Query 001993
Match_columns 985
No_of_seqs 518 out of 4719
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 07:51:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001993.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001993hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 3.4E-46 1.2E-50 439.8 25.8 318 179-537 129-473 (549)
2 1vt4_I APAF-1 related killer D 100.0 2.9E-37 9.8E-42 364.4 20.8 285 179-528 129-436 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 4.1E-35 1.4E-39 384.2 26.9 308 179-535 125-452 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 6.7E-33 2.3E-37 332.2 27.4 306 179-532 125-449 (591)
5 4eco_A Uncharacterized protein 99.9 4.3E-24 1.5E-28 257.0 13.9 365 551-949 81-598 (636)
6 3rgz_A Protein brassinosteroid 99.9 2.3E-24 7.7E-29 265.6 9.9 391 551-973 269-766 (768)
7 4ecn_A Leucine-rich repeat pro 99.9 1.6E-23 5.4E-28 255.9 14.6 323 596-950 440-839 (876)
8 4ecn_A Leucine-rich repeat pro 99.9 5.6E-23 1.9E-27 251.0 16.7 364 551-951 448-872 (876)
9 3vq2_A TLR4, TOLL-like recepto 99.9 4.5E-22 1.5E-26 239.5 20.8 129 550-685 31-165 (606)
10 4eco_A Uncharacterized protein 99.9 8.1E-23 2.8E-27 245.8 12.9 367 550-952 205-633 (636)
11 3vq2_A TLR4, TOLL-like recepto 99.9 1.2E-21 4E-26 235.8 20.4 350 569-949 26-459 (606)
12 4fmz_A Internalin; leucine ric 99.9 7.1E-22 2.4E-26 220.0 16.8 281 600-949 62-344 (347)
13 1o6v_A Internalin A; bacterial 99.9 1.3E-21 4.6E-26 226.8 17.9 338 552-949 47-386 (466)
14 2z63_A TOLL-like receptor 4, v 99.9 9.5E-22 3.3E-26 234.9 16.9 128 550-684 27-160 (570)
15 2z7x_B TOLL-like receptor 1, v 99.9 2.8E-21 9.6E-26 227.9 20.3 152 786-949 321-479 (520)
16 3t6q_A CD180 antigen; protein- 99.9 1.8E-21 6.2E-26 234.2 18.4 378 549-949 31-460 (606)
17 2z81_A CD282 antigen, TOLL-lik 99.9 1.2E-21 4.2E-26 232.7 16.4 368 551-949 26-508 (549)
18 3rgz_A Protein brassinosteroid 99.9 1.6E-21 5.4E-26 240.2 17.8 367 551-949 200-691 (768)
19 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 1.3E-20 4.4E-25 224.2 19.7 363 554-949 34-508 (562)
20 3o6n_A APL1; leucine-rich repe 99.8 7.4E-21 2.5E-25 215.3 16.9 302 574-949 42-350 (390)
21 1o6v_A Internalin A; bacterial 99.8 1.2E-20 4.2E-25 218.6 18.6 319 575-949 44-364 (466)
22 3t6q_A CD180 antigen; protein- 99.8 1.2E-20 4.2E-25 227.0 19.1 126 551-683 57-189 (606)
23 3v47_A TOLL-like receptor 5B a 99.8 1.1E-20 3.7E-25 218.9 17.9 352 550-949 29-406 (455)
24 3oja_B Anopheles plasmodium-re 99.8 1.8E-20 6.1E-25 224.2 17.0 301 575-949 49-356 (597)
25 4fmz_A Internalin; leucine ric 99.8 2E-20 6.9E-25 208.2 16.2 280 601-949 41-322 (347)
26 1ziw_A TOLL-like receptor 3; i 99.8 2.1E-20 7E-25 228.2 16.9 153 550-711 24-183 (680)
27 2id5_A Lingo-1, leucine rich r 99.8 9.5E-20 3.2E-24 212.2 21.2 291 577-925 32-331 (477)
28 4fcg_A Uncharacterized protein 99.8 3.2E-20 1.1E-24 203.9 16.2 230 603-948 80-311 (328)
29 2z63_A TOLL-like receptor 4, v 99.8 5.2E-20 1.8E-24 219.8 18.7 130 577-712 28-162 (570)
30 3j0a_A TOLL-like receptor 5; m 99.8 8E-20 2.7E-24 227.5 19.6 277 549-849 22-373 (844)
31 2z81_A CD282 antigen, TOLL-lik 99.8 7.1E-20 2.4E-24 217.5 16.6 360 569-949 20-484 (549)
32 3j0a_A TOLL-like receptor 5; m 99.8 2E-19 6.8E-24 223.9 20.7 133 575-712 22-161 (844)
33 2z7x_B TOLL-like receptor 1, v 99.8 3.1E-19 1.1E-23 210.3 19.4 358 554-949 3-455 (520)
34 3bz5_A Internalin-J, INLJ; leu 99.8 3E-19 1E-23 205.2 17.9 310 571-949 36-350 (457)
35 3bz5_A Internalin-J, INLJ; leu 99.8 7.4E-19 2.5E-23 202.0 20.3 305 551-931 42-355 (457)
36 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 1.1E-18 3.7E-23 207.5 22.4 342 576-949 30-484 (562)
37 1ziw_A TOLL-like receptor 3; i 99.8 6.2E-19 2.1E-23 215.1 19.5 257 569-849 19-283 (680)
38 3o6n_A APL1; leucine-rich repe 99.8 1.4E-19 4.8E-24 204.7 12.2 297 551-925 45-350 (390)
39 3v47_A TOLL-like receptor 5B a 99.8 1.1E-18 3.6E-23 202.2 19.0 328 577-949 30-382 (455)
40 3oja_B Anopheles plasmodium-re 99.8 2.4E-19 8.3E-24 214.3 11.7 298 551-925 51-356 (597)
41 2id5_A Lingo-1, leucine rich r 99.8 5.1E-18 1.8E-22 197.5 17.4 292 604-949 32-331 (477)
42 2ft3_A Biglycan; proteoglycan, 99.8 1.1E-17 3.7E-22 184.7 18.9 223 577-856 54-281 (332)
43 4g8a_A TOLL-like receptor 4; l 99.8 6.4E-18 2.2E-22 204.5 17.8 130 549-685 50-185 (635)
44 1ogq_A PGIP-2, polygalacturona 99.7 2.2E-18 7.7E-23 188.1 10.1 248 551-851 50-304 (313)
45 1xku_A Decorin; proteoglycan, 99.7 1.8E-17 6.2E-22 182.7 16.6 58 789-848 192-250 (330)
46 1xku_A Decorin; proteoglycan, 99.7 6.1E-17 2.1E-21 178.5 19.2 273 577-924 52-329 (330)
47 4fcg_A Uncharacterized protein 99.7 7.8E-18 2.7E-22 184.9 11.8 199 600-847 100-310 (328)
48 3g06_A SSPH2 (leucine-rich rep 99.7 5.8E-17 2E-21 191.6 17.6 253 605-949 41-295 (622)
49 1jl5_A Outer protein YOPM; leu 99.7 2.9E-17 9.8E-22 188.6 13.9 138 551-709 11-163 (454)
50 1ogq_A PGIP-2, polygalacturona 99.7 6.3E-18 2.2E-22 184.5 8.0 253 577-931 50-308 (313)
51 4g8a_A TOLL-like receptor 4; l 99.7 1.8E-16 6E-21 191.9 20.2 135 568-710 45-184 (635)
52 1jl5_A Outer protein YOPM; leu 99.7 1.9E-16 6.5E-21 181.7 19.3 133 551-709 91-225 (454)
53 2ft3_A Biglycan; proteoglycan, 99.7 3.3E-16 1.1E-20 172.8 18.1 134 789-949 193-331 (332)
54 2z80_A TOLL-like receptor 2, v 99.7 8.2E-17 2.8E-21 179.3 10.8 98 605-707 53-157 (353)
55 2z66_A Variable lymphocyte rec 99.6 1.2E-15 4.1E-20 166.2 15.7 240 608-949 11-259 (306)
56 3qfl_A MLA10; coiled-coil, (CC 99.6 3E-16 1E-20 140.4 8.5 81 4-88 1-83 (115)
57 3zyi_A Leucine-rich repeat-con 99.6 4.8E-15 1.6E-19 170.9 20.5 237 608-949 58-301 (452)
58 3zyj_A Leucine-rich repeat-con 99.6 6.4E-15 2.2E-19 169.2 21.3 237 608-949 47-290 (440)
59 2z80_A TOLL-like receptor 2, v 99.6 7.5E-16 2.6E-20 171.5 12.9 250 577-849 52-312 (353)
60 1w5s_A Origin recognition comp 99.6 3.9E-15 1.3E-19 169.7 18.4 301 179-506 23-372 (412)
61 3zyi_A Leucine-rich repeat-con 99.6 1.5E-15 5.1E-20 175.1 13.7 219 577-849 75-301 (452)
62 3o53_A Protein LRIM1, AGAP0063 99.6 2.6E-16 8.9E-21 172.2 6.6 108 593-712 23-133 (317)
63 1z7x_W Ribonuclease inhibitor; 99.6 2.3E-18 7.9E-23 199.7 -10.7 368 551-949 3-409 (461)
64 3g06_A SSPH2 (leucine-rich rep 99.6 3.5E-15 1.2E-19 176.4 16.3 129 552-709 41-171 (622)
65 3zyj_A Leucine-rich repeat-con 99.6 1.9E-15 6.5E-20 173.6 13.3 219 577-849 64-290 (440)
66 2z66_A Variable lymphocyte rec 99.6 3E-15 1E-19 163.1 12.7 223 577-849 28-259 (306)
67 3ogk_B Coronatine-insensitive 99.6 8.3E-17 2.8E-21 193.0 -0.9 373 551-953 112-527 (592)
68 3ogk_B Coronatine-insensitive 99.6 5.5E-17 1.9E-21 194.5 -3.6 306 597-948 213-548 (592)
69 2qen_A Walker-type ATPase; unk 99.6 8.1E-14 2.8E-18 154.9 22.0 295 179-529 13-349 (350)
70 3oja_A Leucine-rich immune mol 99.5 8.7E-15 3E-19 169.6 10.8 128 787-947 142-271 (487)
71 3o53_A Protein LRIM1, AGAP0063 99.5 7.8E-16 2.7E-20 168.4 0.2 261 605-953 11-277 (317)
72 1ozn_A Reticulon 4 receptor; N 99.5 1.2E-14 4.2E-19 156.4 9.1 102 577-682 32-138 (285)
73 2xwt_C Thyrotropin receptor; s 99.5 1.5E-13 5.2E-18 143.5 16.3 64 614-681 23-88 (239)
74 1ozn_A Reticulon 4 receptor; N 99.5 4.4E-14 1.5E-18 152.0 12.1 197 604-849 32-236 (285)
75 1wwl_A Monocyte differentiatio 99.5 1.9E-15 6.5E-20 164.9 1.1 245 575-849 41-307 (312)
76 1wwl_A Monocyte differentiatio 99.5 1E-14 3.6E-19 159.0 6.8 34 914-949 274-307 (312)
77 2fna_A Conserved hypothetical 99.5 6.7E-13 2.3E-17 147.8 21.5 290 179-528 14-356 (357)
78 1h6u_A Internalin H; cell adhe 99.5 5.2E-14 1.8E-18 152.9 12.1 193 603-856 40-234 (308)
79 3oja_A Leucine-rich immune mol 99.5 6.6E-14 2.2E-18 162.2 11.3 212 602-849 32-248 (487)
80 1z7x_W Ribonuclease inhibitor; 99.5 2.9E-16 1E-20 181.9 -9.7 341 577-949 3-381 (461)
81 2p1m_B Transport inhibitor res 99.5 9.1E-16 3.1E-20 184.0 -5.9 151 551-704 105-270 (594)
82 1h6u_A Internalin H; cell adhe 99.5 2.2E-13 7.6E-18 148.0 13.0 80 620-707 36-115 (308)
83 4ay9_X Follicle-stimulating ho 99.5 3.3E-13 1.1E-17 149.6 13.9 230 613-923 20-255 (350)
84 1p9a_G Platelet glycoprotein I 99.4 1E-12 3.4E-17 141.3 17.0 60 621-684 6-66 (290)
85 3rfs_A Internalin B, repeat mo 99.4 4.4E-13 1.5E-17 142.9 13.8 209 620-939 36-247 (272)
86 2o6q_A Variable lymphocyte rec 99.4 1.2E-12 4.1E-17 139.4 16.0 191 607-849 19-216 (270)
87 2z62_A TOLL-like receptor 4, v 99.4 8.6E-13 2.9E-17 141.1 14.5 127 577-709 28-159 (276)
88 2z62_A TOLL-like receptor 4, v 99.4 7.2E-13 2.5E-17 141.7 13.6 87 613-706 18-107 (276)
89 1p9a_G Platelet glycoprotein I 99.4 1.2E-12 4E-17 140.7 15.0 195 601-849 7-206 (290)
90 2ast_B S-phase kinase-associat 99.4 3.8E-14 1.3E-18 156.6 0.9 251 578-934 48-313 (336)
91 4ay9_X Follicle-stimulating ho 99.4 3.2E-12 1.1E-16 141.6 16.4 248 618-947 3-255 (350)
92 4glp_A Monocyte differentiatio 99.4 5.2E-13 1.8E-17 145.4 9.5 229 575-849 62-305 (310)
93 2o6q_A Variable lymphocyte rec 99.4 3.2E-12 1.1E-16 136.1 15.2 197 625-896 16-216 (270)
94 2v1u_A Cell division control p 99.4 3.3E-11 1.1E-15 135.7 24.3 294 179-506 20-352 (387)
95 1fnn_A CDC6P, cell division co 99.4 2.8E-11 9.6E-16 136.4 22.9 299 179-507 18-353 (389)
96 2p1m_B Transport inhibitor res 99.4 1.2E-14 4E-19 174.3 -5.2 85 575-659 154-245 (594)
97 2ca6_A RAN GTPase-activating p 99.3 2.9E-14 1E-18 160.7 -3.6 215 596-849 24-285 (386)
98 3rfs_A Internalin B, repeat mo 99.3 2.8E-12 9.6E-17 136.6 11.9 99 602-707 39-141 (272)
99 1h6t_A Internalin B; cell adhe 99.3 2.7E-12 9.3E-17 138.0 11.4 59 786-849 153-211 (291)
100 2qby_B CDC6 homolog 3, cell di 99.3 4.8E-11 1.6E-15 134.2 22.0 298 179-507 21-341 (384)
101 2ast_B S-phase kinase-associat 99.3 2.5E-13 8.4E-18 150.0 3.0 220 553-848 49-282 (336)
102 2xwt_C Thyrotropin receptor; s 99.3 1.5E-12 5E-17 136.0 8.7 58 789-850 179-238 (239)
103 1m9s_A Internalin B; cell inva 99.3 5.1E-12 1.8E-16 149.2 12.0 79 621-707 39-117 (605)
104 2ca6_A RAN GTPase-activating p 99.3 2.4E-13 8.2E-18 153.2 -0.3 245 569-849 24-314 (386)
105 1njg_A DNA polymerase III subu 99.3 6.6E-11 2.3E-15 123.9 17.1 197 179-405 24-231 (250)
106 2qby_A CDC6 homolog 1, cell di 99.3 1.1E-10 3.7E-15 131.4 19.4 298 179-506 21-349 (386)
107 4glp_A Monocyte differentiatio 99.2 1.8E-11 6E-16 133.2 11.2 81 624-707 90-177 (310)
108 1h6t_A Internalin B; cell adhe 99.2 2E-11 6.9E-16 131.2 11.3 170 621-896 42-211 (291)
109 1m9s_A Internalin B; cell inva 99.2 3.2E-11 1.1E-15 142.4 13.9 168 600-849 39-208 (605)
110 1xeu_A Internalin C; cellular 99.2 1.5E-11 5E-16 130.1 8.4 165 602-849 17-183 (263)
111 4ezg_A Putative uncharacterize 99.2 2.1E-11 7.3E-16 122.8 8.9 152 621-849 40-192 (197)
112 3m19_A Variable lymphocyte rec 99.2 1.6E-10 5.4E-15 121.4 15.7 169 605-849 15-190 (251)
113 2chg_A Replication factor C sm 99.2 3.5E-10 1.2E-14 116.4 16.4 186 179-404 18-206 (226)
114 3goz_A Leucine-rich repeat-con 99.1 5.8E-12 2E-16 140.3 0.9 65 618-683 15-90 (362)
115 1dce_A Protein (RAB geranylger 99.1 2.2E-12 7.6E-17 151.4 -2.9 120 790-944 442-566 (567)
116 3m19_A Variable lymphocyte rec 99.1 1.9E-10 6.5E-15 120.8 12.0 150 551-710 35-190 (251)
117 3cvr_A Invasion plasmid antige 99.1 6.9E-11 2.4E-15 137.9 8.5 89 605-709 60-150 (571)
118 4ezg_A Putative uncharacterize 99.1 3.7E-10 1.3E-14 113.7 11.5 144 552-710 45-192 (197)
119 3e6j_A Variable lymphocyte rec 99.1 3.6E-10 1.2E-14 116.7 11.3 128 577-712 40-172 (229)
120 3cvr_A Invasion plasmid antige 99.1 4.3E-10 1.5E-14 131.2 12.8 72 626-710 60-131 (571)
121 3goz_A Leucine-rich repeat-con 99.0 4E-11 1.4E-15 133.5 2.6 89 760-849 196-295 (362)
122 2ell_A Acidic leucine-rich nuc 99.0 3.1E-10 1.1E-14 111.0 8.2 127 577-711 24-159 (168)
123 2v9t_B SLIT homolog 2 protein 99.0 7.2E-10 2.5E-14 113.6 9.7 127 577-711 32-164 (220)
124 4b8c_D Glucose-repressible alc 99.0 3.5E-10 1.2E-14 137.1 8.6 153 552-712 174-329 (727)
125 2je0_A Acidic leucine-rich nuc 99.0 2.8E-10 9.6E-15 108.8 6.0 122 577-706 17-147 (149)
126 2o6s_A Variable lymphocyte rec 99.0 1.9E-09 6.6E-14 109.4 11.6 127 576-710 27-159 (208)
127 3e6j_A Variable lymphocyte rec 99.0 1.6E-09 5.5E-14 111.8 10.9 130 549-685 38-171 (229)
128 1a9n_A U2A', U2A'; complex (nu 99.0 6.5E-10 2.2E-14 109.6 7.5 128 572-709 14-150 (176)
129 1sxj_B Activator 1 37 kDa subu 99.0 2.7E-09 9.1E-14 116.7 13.1 185 179-403 22-211 (323)
130 1hqc_A RUVB; extended AAA-ATPa 99.0 4.1E-09 1.4E-13 115.2 14.4 267 179-504 13-324 (324)
131 2ell_A Acidic leucine-rich nuc 98.9 1.3E-09 4.3E-14 106.6 8.7 135 549-694 22-165 (168)
132 2v70_A SLIT-2, SLIT homolog 2 98.9 2E-09 6.8E-14 110.2 10.3 145 555-711 15-165 (220)
133 1xeu_A Internalin C; cellular 98.9 6.3E-09 2.1E-13 109.7 13.2 143 551-712 41-185 (263)
134 2o6s_A Variable lymphocyte rec 98.9 5E-09 1.7E-13 106.4 11.9 147 550-712 27-178 (208)
135 2v9t_B SLIT homolog 2 protein 98.9 3.1E-09 1.1E-13 108.8 10.1 129 550-685 31-164 (220)
136 2je0_A Acidic leucine-rich nuc 98.9 1.9E-09 6.6E-14 102.9 7.6 124 550-681 16-148 (149)
137 2v70_A SLIT-2, SLIT homolog 2 98.9 3.7E-09 1.3E-13 108.3 9.8 130 550-685 31-165 (220)
138 2xot_A Amphoterin-induced prot 98.8 4.9E-09 1.7E-13 116.4 9.7 93 608-707 22-120 (361)
139 1dce_A Protein (RAB geranylger 98.8 4.8E-09 1.6E-13 123.1 9.4 82 600-684 459-544 (567)
140 3te6_A Regulatory protein SIR3 98.8 7.5E-08 2.6E-12 102.5 16.8 175 179-368 21-212 (318)
141 1iqp_A RFCS; clamp loader, ext 98.8 1.8E-08 6E-13 110.3 12.1 184 179-405 26-215 (327)
142 1a9n_A U2A', U2A'; complex (nu 98.8 9.1E-09 3.1E-13 101.3 8.7 124 550-684 18-151 (176)
143 4b8c_D Glucose-repressible alc 98.8 5.8E-09 2E-13 126.4 8.0 110 570-685 217-328 (727)
144 3sb4_A Hypothetical leucine ri 98.7 1.4E-08 4.6E-13 111.3 9.1 125 786-945 199-328 (329)
145 1w8a_A SLIT protein; signaling 98.7 2E-08 6.8E-13 100.3 8.3 101 605-709 30-136 (192)
146 1ds9_A Outer arm dynein; leuci 98.7 9.2E-10 3.2E-14 110.8 -1.6 80 600-682 14-102 (198)
147 2xot_A Amphoterin-induced prot 98.7 2.5E-08 8.6E-13 110.7 9.7 128 577-712 39-176 (361)
148 1w8a_A SLIT protein; signaling 98.7 2.5E-08 8.5E-13 99.6 7.9 123 554-685 11-138 (192)
149 2wfh_A SLIT homolog 2 protein 98.7 5.3E-08 1.8E-12 97.2 10.2 100 605-709 32-136 (193)
150 1jr3_A DNA polymerase III subu 98.7 1.8E-07 6.1E-12 104.4 14.7 195 179-402 17-221 (373)
151 2r9u_A Variable lymphocyte rec 98.6 5.4E-08 1.8E-12 95.3 9.0 99 607-712 15-118 (174)
152 2wfh_A SLIT homolog 2 protein 98.6 5.2E-08 1.8E-12 97.3 9.0 103 577-685 31-138 (193)
153 2o6r_A Variable lymphocyte rec 98.6 7E-08 2.4E-12 95.0 9.7 101 605-710 29-135 (177)
154 1ds9_A Outer arm dynein; leuci 98.6 9.6E-10 3.3E-14 110.7 -4.6 108 596-710 40-151 (198)
155 3g39_A Variable lymphocyte rec 98.6 8E-08 2.8E-12 93.7 9.0 101 606-713 11-116 (170)
156 2chq_A Replication factor C sm 98.6 2.2E-07 7.5E-12 101.1 11.5 183 179-403 18-205 (319)
157 1sxj_D Activator 1 41 kDa subu 98.5 1E-06 3.5E-11 97.3 15.1 195 179-402 38-235 (353)
158 3sb4_A Hypothetical leucine ri 98.5 2.6E-07 9E-12 101.0 10.0 284 576-920 24-327 (329)
159 2o6r_A Variable lymphocyte rec 98.5 4.1E-07 1.4E-11 89.4 9.3 105 576-685 27-136 (177)
160 1jbk_A CLPB protein; beta barr 98.4 2.2E-07 7.6E-12 92.6 7.2 149 179-363 23-194 (195)
161 3pfi_A Holliday junction ATP-d 98.4 6.7E-06 2.3E-10 90.1 19.4 180 179-403 30-228 (338)
162 3bos_A Putative DNA replicatio 98.4 4.3E-07 1.5E-11 94.3 8.7 155 215-403 51-218 (242)
163 2r9u_A Variable lymphocyte rec 98.4 4.4E-07 1.5E-11 88.8 7.9 80 604-685 33-117 (174)
164 3g39_A Variable lymphocyte rec 98.4 4.3E-07 1.5E-11 88.5 7.5 80 604-685 30-114 (170)
165 4fdw_A Leucine rich hypothetic 98.3 6E-06 2.1E-10 92.3 15.1 224 599-855 131-361 (401)
166 1sxj_E Activator 1 40 kDa subu 98.3 1.6E-06 5.5E-11 95.8 10.2 195 179-403 15-238 (354)
167 2z4s_A Chromosomal replication 98.3 9.1E-06 3.1E-10 91.9 16.2 162 216-401 130-305 (440)
168 3uk6_A RUVB-like 2; hexameric 98.2 2.5E-05 8.4E-10 86.7 18.1 198 179-401 45-302 (368)
169 1a5t_A Delta prime, HOLB; zinc 98.2 2.1E-05 7.3E-10 85.6 16.8 156 215-402 23-205 (334)
170 3u61_B DNA polymerase accessor 98.2 8.7E-06 3E-10 88.5 13.6 178 179-399 27-213 (324)
171 3pvs_A Replication-associated 98.2 7.7E-06 2.6E-10 92.3 13.3 179 179-402 27-215 (447)
172 3h4m_A Proteasome-activating n 98.2 1.4E-05 4.9E-10 85.0 14.6 192 179-400 18-229 (285)
173 2qz4_A Paraplegin; AAA+, SPG7, 98.2 3.3E-05 1.1E-09 81.1 16.6 194 179-401 7-221 (262)
174 2ifg_A High affinity nerve gro 98.2 3.1E-06 1.1E-10 93.2 8.7 94 613-712 20-116 (347)
175 3syl_A Protein CBBX; photosynt 98.1 2.7E-05 9.1E-10 84.0 14.9 174 179-370 32-220 (309)
176 1sxj_A Activator 1 95 kDa subu 98.1 1.5E-05 5E-10 92.4 13.4 207 179-402 40-253 (516)
177 1sxj_C Activator 1 40 kDa subu 98.1 4.1E-05 1.4E-09 83.7 15.0 175 179-399 26-209 (340)
178 1d2n_A N-ethylmaleimide-sensit 98.0 5.6E-05 1.9E-09 79.8 15.3 173 179-394 34-229 (272)
179 2ra8_A Uncharacterized protein 98.0 3.8E-07 1.3E-11 100.1 -1.6 141 786-949 169-318 (362)
180 2p65_A Hypothetical protein PF 98.0 7.4E-06 2.5E-10 80.9 7.9 44 179-239 23-66 (187)
181 3n70_A Transport activator; si 98.0 5.9E-06 2E-10 77.9 6.1 114 179-334 2-115 (145)
182 1xwi_A SKD1 protein; VPS4B, AA 98.0 0.00012 4.1E-09 79.1 17.1 195 179-403 13-224 (322)
183 4fs7_A Uncharacterized protein 98.0 0.00016 5.5E-09 80.9 18.7 304 570-947 64-375 (394)
184 4fdw_A Leucine rich hypothetic 98.0 0.00028 9.7E-09 78.6 20.5 257 603-948 112-380 (401)
185 3d8b_A Fidgetin-like protein 1 98.0 5.7E-05 1.9E-09 83.0 14.1 194 179-403 85-296 (357)
186 1l8q_A Chromosomal replication 98.0 8.6E-05 3E-09 80.6 15.4 157 215-398 36-204 (324)
187 3eie_A Vacuolar protein sortin 98.0 7E-05 2.4E-09 81.1 14.4 193 179-402 19-228 (322)
188 2ifg_A High affinity nerve gro 97.9 1E-05 3.4E-10 89.1 7.7 84 600-685 27-115 (347)
189 2qp9_X Vacuolar protein sortin 97.9 0.00019 6.6E-09 78.6 17.3 195 179-403 52-262 (355)
190 3ec2_A DNA replication protein 97.9 1.9E-05 6.6E-10 77.5 8.2 103 216-335 38-143 (180)
191 3e4g_A ATP synthase subunit S, 97.9 1.2E-06 4E-11 84.2 -1.2 91 882-976 82-173 (176)
192 3b9p_A CG5977-PA, isoform A; A 97.9 0.0002 7E-09 76.5 16.2 193 179-402 22-233 (297)
193 1in4_A RUVB, holliday junction 97.8 0.0013 4.5E-08 71.3 21.6 178 179-401 26-222 (334)
194 3vfd_A Spastin; ATPase, microt 97.8 0.00024 8.1E-09 79.2 15.8 193 179-401 116-325 (389)
195 4fs7_A Uncharacterized protein 97.8 0.00045 1.6E-08 77.1 18.2 316 551-943 71-393 (394)
196 2gno_A DNA polymerase III, gam 97.8 0.00013 4.3E-09 77.8 12.7 132 216-367 18-152 (305)
197 3cf0_A Transitional endoplasmi 97.8 0.00045 1.5E-08 73.8 17.0 189 179-397 16-223 (301)
198 2w58_A DNAI, primosome compone 97.8 3.3E-05 1.1E-09 77.4 7.0 100 217-334 55-158 (202)
199 3co5_A Putative two-component 97.7 2.3E-05 7.8E-10 73.6 5.4 110 179-334 5-115 (143)
200 4b4t_J 26S protease regulatory 97.7 0.0014 4.9E-08 71.3 19.8 187 179-395 149-354 (405)
201 3e4g_A ATP synthase subunit S, 97.7 4.2E-06 1.4E-10 80.3 -0.1 92 815-929 61-154 (176)
202 2zan_A Vacuolar protein sortin 97.7 0.00039 1.3E-08 78.6 16.0 195 179-402 135-345 (444)
203 4fcw_A Chaperone protein CLPB; 97.7 0.00017 5.8E-09 77.7 11.4 139 179-334 18-169 (311)
204 1qvr_A CLPB protein; coiled co 97.6 0.00013 4.5E-09 89.9 11.3 152 179-366 171-344 (854)
205 1ojl_A Transcriptional regulat 97.6 0.00013 4.4E-09 78.0 9.8 158 179-364 3-187 (304)
206 3hu3_A Transitional endoplasmi 97.6 0.00023 8E-09 81.0 12.2 193 179-401 205-414 (489)
207 2bjv_A PSP operon transcriptio 97.6 9.6E-05 3.3E-09 77.6 8.3 131 179-334 7-150 (265)
208 3pxg_A Negative regulator of g 97.6 0.00017 5.9E-09 82.2 10.8 146 179-367 181-338 (468)
209 4b4t_L 26S protease subunit RP 97.6 0.001 3.4E-08 73.8 16.0 187 179-395 182-387 (437)
210 4b4t_H 26S protease regulatory 97.6 0.0011 3.7E-08 73.2 15.8 187 179-395 210-415 (467)
211 2kjq_A DNAA-related protein; s 97.6 7.6E-05 2.6E-09 70.4 5.8 86 217-334 37-124 (149)
212 1ofh_A ATP-dependent HSL prote 97.6 0.00054 1.8E-08 73.7 13.4 162 179-365 16-213 (310)
213 1lv7_A FTSH; alpha/beta domain 97.5 0.0013 4.6E-08 68.3 16.0 191 179-400 13-223 (257)
214 3un9_A NLR family member X1; l 97.4 1.3E-05 4.5E-10 88.6 -1.2 12 577-588 101-112 (372)
215 3un9_A NLR family member X1; l 97.4 2.7E-05 9.1E-10 86.1 1.3 132 551-685 101-251 (372)
216 2c9o_A RUVB-like 1; hexameric 97.4 0.0011 3.7E-08 75.3 13.9 97 297-401 297-409 (456)
217 1r6b_X CLPA protein; AAA+, N-t 97.4 0.001 3.6E-08 81.1 14.3 155 179-367 187-362 (758)
218 4b4t_K 26S protease regulatory 97.4 0.0012 4.2E-08 73.0 13.3 187 179-395 173-379 (428)
219 3rw6_A Nuclear RNA export fact 97.4 0.0001 3.4E-09 76.5 4.2 58 601-660 167-231 (267)
220 2ra8_A Uncharacterized protein 97.3 0.00023 7.8E-09 77.9 7.2 59 788-849 251-318 (362)
221 3pxi_A Negative regulator of g 97.3 0.00063 2.2E-08 82.8 11.8 159 179-366 492-674 (758)
222 3pxi_A Negative regulator of g 97.3 0.0015 5.3E-08 79.4 15.1 148 179-367 181-338 (758)
223 2ce7_A Cell division protein F 97.3 0.0024 8.3E-08 71.9 14.9 186 179-395 17-221 (476)
224 4b4t_I 26S protease regulatory 97.3 0.0034 1.2E-07 68.6 15.3 186 179-395 183-388 (437)
225 4gt6_A Cell surface protein; l 97.3 0.0064 2.2E-07 67.7 18.2 105 811-949 261-368 (394)
226 4b4t_M 26S protease regulatory 97.3 0.0013 4.4E-08 72.9 12.1 185 179-394 182-386 (434)
227 1io0_A Tropomodulin; LRR prote 97.0 0.0004 1.4E-08 68.3 4.3 107 574-682 33-160 (185)
228 2qgz_A Helicase loader, putati 97.0 0.00046 1.6E-08 73.8 4.9 37 216-254 152-189 (308)
229 4gt6_A Cell surface protein; l 96.9 0.0049 1.7E-07 68.7 12.9 125 784-946 260-386 (394)
230 1qvr_A CLPB protein; coiled co 96.9 0.0022 7.5E-08 79.0 10.6 138 179-334 559-710 (854)
231 3rw6_A Nuclear RNA export fact 96.9 0.00071 2.4E-08 70.1 5.1 80 622-706 167-258 (267)
232 3t15_A Ribulose bisphosphate c 96.9 0.0027 9.2E-08 67.3 9.8 25 214-238 34-58 (293)
233 3cf2_A TER ATPase, transitiona 96.9 0.0055 1.9E-07 73.2 13.2 186 179-395 205-407 (806)
234 2r62_A Cell division protease 96.9 0.0005 1.7E-08 72.2 3.9 165 179-368 12-197 (268)
235 2cvh_A DNA repair and recombin 96.9 0.0033 1.1E-07 63.4 9.8 86 215-306 19-116 (220)
236 2r44_A Uncharacterized protein 96.8 0.0013 4.6E-08 71.3 6.6 152 179-369 28-200 (331)
237 2vhj_A Ntpase P4, P4; non- hyd 96.8 0.00082 2.8E-08 70.6 4.3 70 215-306 122-193 (331)
238 1io0_A Tropomodulin; LRR prote 96.7 0.00034 1.2E-08 68.7 1.1 114 593-708 25-160 (185)
239 1r6b_X CLPA protein; AAA+, N-t 96.7 0.0034 1.2E-07 76.5 9.8 137 179-334 459-607 (758)
240 1um8_A ATP-dependent CLP prote 96.6 0.0064 2.2E-07 67.2 10.1 23 216-238 72-94 (376)
241 3m6a_A ATP-dependent protease 96.5 0.0025 8.4E-08 73.9 6.2 165 179-367 82-266 (543)
242 2b8t_A Thymidine kinase; deoxy 96.4 0.0029 1E-07 63.5 5.3 114 215-336 11-127 (223)
243 4h09_A Hypothetical leucine ri 96.3 0.032 1.1E-06 61.5 13.9 42 812-856 260-303 (379)
244 1jr3_D DNA polymerase III, del 96.3 0.057 2E-06 58.5 15.6 158 216-401 18-184 (343)
245 1ypw_A Transitional endoplasmi 96.2 0.0097 3.3E-07 72.3 9.7 166 179-368 205-386 (806)
246 1ixz_A ATP-dependent metallopr 96.2 0.021 7.2E-07 59.0 10.8 151 219-395 52-221 (254)
247 2x8a_A Nuclear valosin-contain 96.1 0.038 1.3E-06 57.7 12.5 128 219-367 47-191 (274)
248 1iy2_A ATP-dependent metallopr 96.1 0.028 9.6E-07 58.9 11.3 186 179-395 41-245 (278)
249 2w0m_A SSO2452; RECA, SSPF, un 96.1 0.016 5.6E-07 58.8 9.2 115 216-335 23-168 (235)
250 3hr8_A Protein RECA; alpha and 96.0 0.016 5.3E-07 62.6 9.1 85 214-305 59-149 (356)
251 2dhr_A FTSH; AAA+ protein, hex 96.0 0.032 1.1E-06 63.2 12.0 182 179-395 32-236 (499)
252 1v5w_A DMC1, meiotic recombina 95.9 0.032 1.1E-06 60.4 11.0 58 214-272 120-181 (343)
253 2z43_A DNA repair and recombin 95.9 0.023 7.7E-07 61.1 9.7 89 215-304 106-212 (324)
254 1n0w_A DNA repair protein RAD5 95.7 0.019 6.4E-07 58.9 8.0 90 215-305 23-129 (243)
255 3io5_A Recombination and repai 95.7 0.027 9.3E-07 58.8 8.8 84 218-306 30-122 (333)
256 1g5t_A COB(I)alamin adenosyltr 95.7 0.0097 3.3E-07 57.8 5.0 116 217-336 29-164 (196)
257 4h09_A Hypothetical leucine ri 95.6 0.11 3.6E-06 57.3 14.2 92 755-858 235-328 (379)
258 2i1q_A DNA repair and recombin 95.6 0.02 6.8E-07 61.6 7.9 57 215-272 97-167 (322)
259 1rz3_A Hypothetical protein rb 95.6 0.011 3.8E-07 58.7 5.3 43 182-238 2-44 (201)
260 1xp8_A RECA protein, recombina 95.4 0.035 1.2E-06 60.3 8.9 84 215-305 73-162 (366)
261 2zr9_A Protein RECA, recombina 95.3 0.036 1.2E-06 59.9 8.5 84 215-305 60-149 (349)
262 1cr0_A DNA primase/helicase; R 95.3 0.052 1.8E-06 57.5 9.6 37 216-254 35-72 (296)
263 1u94_A RECA protein, recombina 95.1 0.036 1.2E-06 60.0 7.8 84 215-305 62-151 (356)
264 2px0_A Flagellar biosynthesis 95.0 0.051 1.7E-06 57.3 8.6 87 215-304 104-191 (296)
265 3bh0_A DNAB-like replicative h 94.6 0.19 6.6E-06 53.5 11.9 54 215-272 67-120 (315)
266 3nbx_X ATPase RAVA; AAA+ ATPas 94.6 0.039 1.3E-06 62.6 6.6 42 179-239 23-64 (500)
267 3ice_A Transcription terminati 94.6 0.041 1.4E-06 59.0 6.2 85 215-304 173-270 (422)
268 2orw_A Thymidine kinase; TMTK, 94.4 0.0065 2.2E-07 59.3 -0.2 108 217-335 4-113 (184)
269 1odf_A YGR205W, hypothetical 3 94.4 0.21 7.1E-06 52.3 11.3 81 214-294 29-117 (290)
270 3c8u_A Fructokinase; YP_612366 94.3 0.028 9.4E-07 56.1 4.2 24 215-238 21-44 (208)
271 3lda_A DNA repair protein RAD5 94.2 0.1 3.4E-06 57.4 8.8 57 215-272 177-237 (400)
272 1pzn_A RAD51, DNA repair and r 94.2 0.1 3.5E-06 56.5 8.7 91 214-305 129-241 (349)
273 1qhx_A CPT, protein (chloramph 94.1 0.021 7E-07 55.3 2.7 22 217-238 4-25 (178)
274 1vma_A Cell division protein F 94.1 0.15 5E-06 53.9 9.3 89 214-305 102-196 (306)
275 1zp6_A Hypothetical protein AT 94.0 0.028 9.6E-07 55.1 3.5 24 215-238 8-31 (191)
276 3lw7_A Adenylate kinase relate 94.0 0.024 8.1E-07 54.6 2.8 20 217-236 2-21 (179)
277 4a74_A DNA repair and recombin 93.9 0.18 6.1E-06 50.8 9.5 46 215-260 24-73 (231)
278 1ly1_A Polynucleotide kinase; 93.9 0.029 9.8E-07 54.3 3.3 22 217-238 3-24 (181)
279 3tqc_A Pantothenate kinase; bi 93.9 0.13 4.5E-06 54.5 8.5 101 180-295 69-171 (321)
280 3kb2_A SPBC2 prophage-derived 93.8 0.027 9.1E-07 54.1 2.8 22 217-238 2-23 (173)
281 4a1f_A DNAB helicase, replicat 93.8 0.17 5.7E-06 54.1 9.2 54 216-273 46-99 (338)
282 1sky_E F1-ATPase, F1-ATP synth 93.7 0.089 3E-06 58.4 7.0 87 217-304 152-254 (473)
283 3vaa_A Shikimate kinase, SK; s 93.7 0.031 1.1E-06 55.2 3.1 23 216-238 25-47 (199)
284 3hws_A ATP-dependent CLP prote 93.6 0.046 1.6E-06 59.9 4.6 58 179-238 16-73 (363)
285 2dr3_A UPF0273 protein PH0284; 93.5 0.2 6.8E-06 51.1 9.1 39 216-256 23-61 (247)
286 2r2a_A Uncharacterized protein 93.5 0.07 2.4E-06 52.4 5.3 21 217-237 6-26 (199)
287 1knq_A Gluconate kinase; ALFA/ 93.5 0.046 1.6E-06 52.6 3.9 24 215-238 7-30 (175)
288 3uie_A Adenylyl-sulfate kinase 93.5 0.043 1.5E-06 54.3 3.7 24 215-238 24-47 (200)
289 2rhm_A Putative kinase; P-loop 93.3 0.048 1.6E-06 53.4 3.8 24 215-238 4-27 (193)
290 1kgd_A CASK, peripheral plasma 93.3 0.037 1.3E-06 53.7 2.8 22 217-238 6-27 (180)
291 1kag_A SKI, shikimate kinase I 93.3 0.032 1.1E-06 53.7 2.4 22 217-238 5-26 (173)
292 3trf_A Shikimate kinase, SK; a 93.3 0.038 1.3E-06 53.8 3.0 23 216-238 5-27 (185)
293 4eun_A Thermoresistant glucoki 93.3 0.04 1.4E-06 54.5 3.1 24 215-238 28-51 (200)
294 3dm5_A SRP54, signal recogniti 93.2 0.33 1.1E-05 53.7 10.6 24 215-238 99-122 (443)
295 2ffh_A Protein (FFH); SRP54, s 93.2 0.31 1.1E-05 53.8 10.4 24 215-238 97-120 (425)
296 2ck3_D ATP synthase subunit be 93.2 0.29 9.9E-06 54.2 10.0 89 215-304 152-262 (482)
297 3upu_A ATP-dependent DNA helic 93.2 0.073 2.5E-06 60.3 5.5 22 218-239 47-68 (459)
298 1uj2_A Uridine-cytidine kinase 93.2 0.042 1.4E-06 56.6 3.2 25 214-238 20-44 (252)
299 1ex7_A Guanylate kinase; subst 93.1 0.036 1.2E-06 53.8 2.3 21 218-238 3-23 (186)
300 3cf2_A TER ATPase, transitiona 93.1 0.33 1.1E-05 58.1 11.0 103 179-305 478-580 (806)
301 3e70_C DPA, signal recognition 93.1 0.3 1E-05 52.1 9.7 25 214-238 127-151 (328)
302 4gp7_A Metallophosphoesterase; 93.1 0.043 1.5E-06 52.7 2.8 24 215-238 8-31 (171)
303 1y63_A LMAJ004144AAA protein; 93.0 0.049 1.7E-06 53.0 3.3 24 215-238 9-32 (184)
304 1ukz_A Uridylate kinase; trans 93.0 0.058 2E-06 53.4 3.8 25 214-238 13-37 (203)
305 1gvn_B Zeta; postsegregational 93.0 0.086 2.9E-06 55.3 5.3 25 214-238 31-55 (287)
306 1nks_A Adenylate kinase; therm 93.0 0.042 1.4E-06 53.8 2.8 22 217-238 2-23 (194)
307 3t61_A Gluconokinase; PSI-biol 93.0 0.042 1.4E-06 54.4 2.7 23 216-238 18-40 (202)
308 3tau_A Guanylate kinase, GMP k 92.9 0.05 1.7E-06 54.2 3.2 24 215-238 7-30 (208)
309 4akg_A Glutathione S-transfera 92.9 0.71 2.4E-05 62.6 14.8 140 217-367 1268-1431(2695)
310 3asz_A Uridine kinase; cytidin 92.9 0.054 1.8E-06 54.0 3.4 24 215-238 5-28 (211)
311 1zuh_A Shikimate kinase; alpha 92.8 0.048 1.7E-06 52.1 2.8 25 214-238 5-29 (168)
312 2bdt_A BH3686; alpha-beta prot 92.8 0.053 1.8E-06 53.0 3.2 22 217-238 3-24 (189)
313 3tr0_A Guanylate kinase, GMP k 92.8 0.053 1.8E-06 53.7 3.2 22 217-238 8-29 (205)
314 2qt1_A Nicotinamide riboside k 92.8 0.061 2.1E-06 53.4 3.6 25 214-238 19-43 (207)
315 1uf9_A TT1252 protein; P-loop, 92.8 0.059 2E-06 53.3 3.5 25 214-238 6-30 (203)
316 1kht_A Adenylate kinase; phosp 92.7 0.046 1.6E-06 53.4 2.7 22 217-238 4-25 (192)
317 1fx0_B ATP synthase beta chain 92.7 0.23 7.8E-06 55.2 8.4 89 215-304 164-275 (498)
318 2cdn_A Adenylate kinase; phosp 92.7 0.06 2.1E-06 53.2 3.5 25 214-238 18-42 (201)
319 3iij_A Coilin-interacting nucl 92.7 0.045 1.6E-06 53.0 2.5 24 215-238 10-33 (180)
320 1tev_A UMP-CMP kinase; ploop, 92.7 0.057 2E-06 52.9 3.3 23 216-238 3-25 (196)
321 3jvv_A Twitching mobility prot 92.7 0.082 2.8E-06 57.2 4.7 112 217-340 124-236 (356)
322 2ga8_A Hypothetical 39.9 kDa p 92.7 0.079 2.7E-06 56.5 4.4 45 181-238 2-46 (359)
323 3l0o_A Transcription terminati 92.6 0.041 1.4E-06 58.9 2.2 53 187-257 162-216 (427)
324 2qor_A Guanylate kinase; phosp 92.6 0.049 1.7E-06 54.1 2.6 24 215-238 11-34 (204)
325 2j41_A Guanylate kinase; GMP, 92.6 0.058 2E-06 53.5 3.2 23 216-238 6-28 (207)
326 1ye8_A Protein THEP1, hypothet 92.6 0.056 1.9E-06 52.2 3.0 22 218-239 2-23 (178)
327 2c95_A Adenylate kinase 1; tra 92.6 0.053 1.8E-06 53.3 2.9 23 216-238 9-31 (196)
328 2plr_A DTMP kinase, probable t 92.6 0.12 4.1E-06 51.4 5.6 22 217-238 5-26 (213)
329 1j8m_F SRP54, signal recogniti 92.6 0.33 1.1E-05 51.0 9.1 89 216-306 98-191 (297)
330 3a00_A Guanylate kinase, GMP k 92.5 0.047 1.6E-06 53.2 2.4 22 217-238 2-23 (186)
331 3a4m_A L-seryl-tRNA(SEC) kinas 92.5 0.063 2.2E-06 55.5 3.5 23 216-238 4-26 (260)
332 1ls1_A Signal recognition part 92.5 0.31 1.1E-05 51.2 8.9 86 216-304 98-189 (295)
333 2p5t_B PEZT; postsegregational 92.5 0.1 3.5E-06 53.7 5.0 25 214-238 30-54 (253)
334 2ze6_A Isopentenyl transferase 92.5 0.06 2E-06 55.4 3.2 22 217-238 2-23 (253)
335 1via_A Shikimate kinase; struc 92.4 0.048 1.6E-06 52.6 2.2 21 218-238 6-26 (175)
336 1jjv_A Dephospho-COA kinase; P 92.4 0.065 2.2E-06 53.2 3.3 22 217-238 3-24 (206)
337 3tlx_A Adenylate kinase 2; str 92.4 0.083 2.8E-06 54.0 4.1 24 215-238 28-51 (243)
338 1nn5_A Similar to deoxythymidy 92.4 0.085 2.9E-06 52.6 4.1 24 215-238 8-31 (215)
339 1q57_A DNA primase/helicase; d 92.4 0.45 1.5E-05 54.4 10.7 56 215-273 241-296 (503)
340 2jaq_A Deoxyguanosine kinase; 92.4 0.055 1.9E-06 53.5 2.7 21 218-238 2-22 (205)
341 2yvu_A Probable adenylyl-sulfa 92.3 0.078 2.7E-06 51.6 3.7 25 214-238 11-35 (186)
342 1xjc_A MOBB protein homolog; s 92.3 0.097 3.3E-06 49.7 4.2 24 215-238 3-26 (169)
343 3umf_A Adenylate kinase; rossm 92.3 0.068 2.3E-06 53.2 3.2 25 214-238 27-51 (217)
344 2if2_A Dephospho-COA kinase; a 92.3 0.062 2.1E-06 53.2 2.9 21 218-238 3-23 (204)
345 2iyv_A Shikimate kinase, SK; t 92.2 0.049 1.7E-06 53.0 2.0 21 218-238 4-24 (184)
346 2bbw_A Adenylate kinase 4, AK4 92.2 0.066 2.3E-06 54.9 3.1 23 216-238 27-49 (246)
347 2xxa_A Signal recognition part 92.2 0.46 1.6E-05 52.7 10.1 25 214-238 98-122 (433)
348 3kl4_A SRP54, signal recogniti 92.2 0.53 1.8E-05 52.0 10.4 25 215-239 96-120 (433)
349 3ney_A 55 kDa erythrocyte memb 92.1 0.079 2.7E-06 51.8 3.4 24 215-238 18-41 (197)
350 3cm0_A Adenylate kinase; ATP-b 92.1 0.072 2.5E-06 51.8 3.2 22 217-238 5-26 (186)
351 2bwj_A Adenylate kinase 5; pho 92.1 0.06 2.1E-06 53.0 2.6 22 217-238 13-34 (199)
352 1qf9_A UMP/CMP kinase, protein 92.1 0.081 2.8E-06 51.7 3.5 24 215-238 5-28 (194)
353 2q6t_A DNAB replication FORK h 92.1 0.45 1.6E-05 53.4 10.1 56 215-273 199-254 (444)
354 3e1s_A Exodeoxyribonuclease V, 92.1 0.33 1.1E-05 56.3 9.1 104 217-333 205-314 (574)
355 2z0h_A DTMP kinase, thymidylat 92.1 0.16 5.6E-06 49.6 5.8 21 218-238 2-22 (197)
356 2vli_A Antibiotic resistance p 92.1 0.052 1.8E-06 52.6 2.0 23 216-238 5-27 (183)
357 1ny5_A Transcriptional regulat 92.1 0.64 2.2E-05 51.0 11.0 45 179-238 138-182 (387)
358 1rj9_A FTSY, signal recognitio 92.1 0.077 2.6E-06 56.1 3.4 24 215-238 101-124 (304)
359 1e6c_A Shikimate kinase; phosp 92.0 0.053 1.8E-06 52.0 2.0 22 217-238 3-24 (173)
360 1cke_A CK, MSSA, protein (cyti 92.0 0.069 2.4E-06 53.9 3.0 22 217-238 6-27 (227)
361 1aky_A Adenylate kinase; ATP:A 92.0 0.069 2.3E-06 53.7 2.8 23 216-238 4-26 (220)
362 2hf9_A Probable hydrogenase ni 91.9 0.098 3.4E-06 52.7 4.0 25 215-239 37-61 (226)
363 2pt5_A Shikimate kinase, SK; a 91.9 0.069 2.4E-06 50.9 2.7 21 218-238 2-22 (168)
364 3aez_A Pantothenate kinase; tr 91.9 0.085 2.9E-06 56.0 3.6 25 214-238 88-112 (312)
365 2jeo_A Uridine-cytidine kinase 91.9 0.09 3.1E-06 53.8 3.6 24 215-238 24-47 (245)
366 1lvg_A Guanylate kinase, GMP k 91.8 0.062 2.1E-06 53.0 2.3 22 217-238 5-26 (198)
367 2pez_A Bifunctional 3'-phospho 91.8 0.091 3.1E-06 50.7 3.5 24 215-238 4-27 (179)
368 1g8p_A Magnesium-chelatase 38 91.8 0.06 2.1E-06 58.5 2.4 43 179-238 25-67 (350)
369 2grj_A Dephospho-COA kinase; T 91.8 0.074 2.5E-06 52.0 2.7 25 214-238 10-34 (192)
370 3llm_A ATP-dependent RNA helic 91.7 0.52 1.8E-05 47.7 9.2 89 217-306 77-187 (235)
371 2wwf_A Thymidilate kinase, put 91.7 0.08 2.7E-06 52.7 3.0 24 215-238 9-32 (212)
372 3cmu_A Protein RECA, recombina 91.6 0.2 6.7E-06 65.5 7.0 85 214-305 1425-1515(2050)
373 2pbr_A DTMP kinase, thymidylat 91.6 0.076 2.6E-06 52.0 2.7 21 218-238 2-22 (195)
374 1htw_A HI0065; nucleotide-bind 91.6 0.11 3.6E-06 49.0 3.5 24 215-238 32-55 (158)
375 2f6r_A COA synthase, bifunctio 91.5 0.099 3.4E-06 54.7 3.6 24 214-237 73-96 (281)
376 1znw_A Guanylate kinase, GMP k 91.5 0.09 3.1E-06 52.2 3.1 23 216-238 20-42 (207)
377 3fwy_A Light-independent proto 91.5 0.096 3.3E-06 55.6 3.5 40 214-255 46-85 (314)
378 2r6a_A DNAB helicase, replicat 91.3 0.4 1.4E-05 54.0 8.6 52 215-269 202-253 (454)
379 1zd8_A GTP:AMP phosphotransfer 91.3 0.089 3E-06 53.1 2.9 24 215-238 6-29 (227)
380 2wsm_A Hydrogenase expression/ 91.2 0.11 3.7E-06 52.1 3.4 25 215-239 29-53 (221)
381 1z6g_A Guanylate kinase; struc 91.2 0.084 2.9E-06 52.9 2.5 23 216-238 23-45 (218)
382 4e22_A Cytidylate kinase; P-lo 91.2 0.1 3.5E-06 53.6 3.2 23 216-238 27-49 (252)
383 1s96_A Guanylate kinase, GMP k 91.1 0.1 3.6E-06 52.2 3.1 24 215-238 15-38 (219)
384 1tue_A Replication protein E1; 91.1 0.14 4.9E-06 49.8 3.9 23 216-238 58-80 (212)
385 2pt7_A CAG-ALFA; ATPase, prote 91.1 0.57 2E-05 50.1 9.1 106 217-337 172-277 (330)
386 3rfe_A Platelet glycoprotein I 91.0 0.25 8.7E-06 44.6 5.3 33 650-683 32-65 (130)
387 1zak_A Adenylate kinase; ATP:A 91.0 0.085 2.9E-06 53.1 2.3 24 215-238 4-27 (222)
388 2v54_A DTMP kinase, thymidylat 91.0 0.1 3.4E-06 51.6 2.8 22 217-238 5-26 (204)
389 2r9v_A ATP synthase subunit al 91.0 0.22 7.6E-06 55.4 5.7 86 215-304 174-276 (515)
390 2yhs_A FTSY, cell division pro 91.0 0.44 1.5E-05 53.3 8.2 43 214-259 291-333 (503)
391 2qe7_A ATP synthase subunit al 90.9 0.23 7.9E-06 55.3 5.8 86 215-304 161-263 (502)
392 1m7g_A Adenylylsulfate kinase; 90.9 0.13 4.3E-06 51.3 3.5 24 215-238 24-47 (211)
393 3fb4_A Adenylate kinase; psych 90.9 0.11 3.7E-06 52.0 3.0 21 218-238 2-22 (216)
394 3p32_A Probable GTPase RV1496/ 90.8 0.21 7.2E-06 54.2 5.3 25 214-238 77-101 (355)
395 1vht_A Dephospho-COA kinase; s 90.8 0.14 4.7E-06 51.3 3.6 23 216-238 4-26 (218)
396 2f1r_A Molybdopterin-guanine d 90.7 0.095 3.2E-06 50.1 2.2 22 217-238 3-24 (171)
397 3dl0_A Adenylate kinase; phosp 90.7 0.12 4E-06 51.7 3.0 21 218-238 2-22 (216)
398 3b9q_A Chloroplast SRP recepto 90.6 0.13 4.5E-06 54.2 3.5 24 215-238 99-122 (302)
399 3bgw_A DNAB-like replicative h 90.6 1.1 3.9E-05 49.9 11.3 53 215-271 196-248 (444)
400 2zts_A Putative uncharacterize 90.6 0.43 1.5E-05 48.6 7.4 50 215-267 29-78 (251)
401 2ewv_A Twitching motility prot 90.6 0.22 7.7E-06 54.3 5.4 112 215-338 135-247 (372)
402 1gtv_A TMK, thymidylate kinase 90.6 0.075 2.6E-06 53.0 1.4 21 218-238 2-22 (214)
403 2i3b_A HCR-ntpase, human cance 90.6 0.1 3.6E-06 50.8 2.4 22 218-239 3-24 (189)
404 3be4_A Adenylate kinase; malar 90.5 0.095 3.3E-06 52.5 2.2 22 217-238 6-27 (217)
405 1sq5_A Pantothenate kinase; P- 90.5 0.15 5E-06 54.3 3.7 25 214-238 78-102 (308)
406 2j37_W Signal recognition part 90.4 0.8 2.7E-05 51.7 9.8 25 214-238 99-123 (504)
407 3dzd_A Transcriptional regulat 90.4 0.26 8.9E-06 53.7 5.6 45 179-238 130-174 (368)
408 3b85_A Phosphate starvation-in 90.4 0.17 5.7E-06 50.1 3.7 22 218-239 24-45 (208)
409 2ehv_A Hypothetical protein PH 90.3 0.13 4.4E-06 52.7 3.0 24 215-238 29-52 (251)
410 2onk_A Molybdate/tungstate ABC 90.1 0.14 4.7E-06 52.1 3.0 22 217-238 25-46 (240)
411 2ck3_A ATP synthase subunit al 90.1 0.34 1.2E-05 54.1 6.2 90 215-304 161-271 (510)
412 3lnc_A Guanylate kinase, GMP k 90.1 0.1 3.4E-06 52.9 1.9 23 216-238 27-50 (231)
413 3cmu_A Protein RECA, recombina 90.1 0.49 1.7E-05 61.9 8.5 84 215-305 382-471 (2050)
414 3mfy_A V-type ATP synthase alp 90.0 0.73 2.5E-05 51.7 8.8 49 215-267 226-275 (588)
415 3hjn_A DTMP kinase, thymidylat 90.0 0.42 1.4E-05 46.8 6.3 49 218-268 2-50 (197)
416 3nwj_A ATSK2; P loop, shikimat 90.0 0.11 3.9E-06 53.0 2.2 22 217-238 49-70 (250)
417 1zu4_A FTSY; GTPase, signal re 90.0 0.24 8.3E-06 52.7 4.8 25 214-238 103-127 (320)
418 3k1j_A LON protease, ATP-depen 89.9 0.17 5.9E-06 59.3 4.0 41 179-238 42-82 (604)
419 2ged_A SR-beta, signal recogni 89.9 0.16 5.6E-06 49.4 3.2 26 214-239 46-71 (193)
420 3ake_A Cytidylate kinase; CMP 89.9 0.15 5.1E-06 50.5 3.0 21 218-238 4-24 (208)
421 3a8t_A Adenylate isopentenyltr 89.9 0.16 5.6E-06 53.8 3.3 24 215-238 39-62 (339)
422 2pcj_A ABC transporter, lipopr 89.8 0.14 4.9E-06 51.4 2.8 22 217-238 31-52 (224)
423 4eaq_A DTMP kinase, thymidylat 89.8 0.28 9.7E-06 49.4 5.0 24 215-238 25-48 (229)
424 3tif_A Uncharacterized ABC tra 89.8 0.16 5.6E-06 51.4 3.2 23 216-238 31-53 (235)
425 3d3q_A TRNA delta(2)-isopenten 89.7 0.17 5.6E-06 53.9 3.2 22 217-238 8-29 (340)
426 2og2_A Putative signal recogni 89.6 0.18 6.1E-06 54.4 3.5 25 214-238 155-179 (359)
427 1g41_A Heat shock protein HSLU 89.6 0.15 5.1E-06 56.5 2.9 57 179-238 16-72 (444)
428 1np6_A Molybdopterin-guanine d 89.6 0.17 5.7E-06 48.5 2.9 24 215-238 5-28 (174)
429 1e4v_A Adenylate kinase; trans 89.6 0.14 4.9E-06 51.0 2.6 21 218-238 2-22 (214)
430 2xb4_A Adenylate kinase; ATP-b 89.6 0.16 5.5E-06 51.1 2.9 21 218-238 2-22 (223)
431 3r20_A Cytidylate kinase; stru 89.6 0.16 5.6E-06 51.0 3.0 23 216-238 9-31 (233)
432 1ak2_A Adenylate kinase isoenz 89.6 0.16 5.5E-06 51.4 3.0 24 215-238 15-38 (233)
433 3oaa_A ATP synthase subunit al 89.6 0.93 3.2E-05 50.3 9.1 86 215-304 161-263 (513)
434 1yrb_A ATP(GTP)binding protein 89.5 0.2 6.9E-06 51.7 3.7 25 214-238 12-36 (262)
435 3foz_A TRNA delta(2)-isopenten 89.4 0.22 7.4E-06 52.0 3.7 25 214-238 8-32 (316)
436 3sr0_A Adenylate kinase; phosp 89.4 0.16 5.5E-06 50.2 2.7 21 218-238 2-22 (206)
437 2cbz_A Multidrug resistance-as 89.4 0.18 6.3E-06 51.1 3.2 23 216-238 31-53 (237)
438 3vr4_D V-type sodium ATPase su 89.3 0.29 9.8E-06 53.9 4.8 86 217-304 152-257 (465)
439 2wji_A Ferrous iron transport 89.3 0.2 6.9E-06 47.4 3.3 23 217-239 4-26 (165)
440 2zej_A Dardarin, leucine-rich 89.3 0.17 5.7E-06 49.0 2.8 22 218-239 4-25 (184)
441 3gfo_A Cobalt import ATP-bindi 89.3 0.17 5.8E-06 52.5 2.9 22 217-238 35-56 (275)
442 3vkg_A Dynein heavy chain, cyt 89.2 1.4 4.7E-05 60.5 12.1 81 218-308 1306-1387(3245)
443 3cmw_A Protein RECA, recombina 89.2 0.55 1.9E-05 60.6 8.0 81 217-304 384-470 (1706)
444 3zvl_A Bifunctional polynucleo 89.1 0.19 6.6E-06 55.8 3.4 25 214-238 256-280 (416)
445 1xx6_A Thymidine kinase; NESG, 89.1 0.18 6E-06 49.2 2.7 111 215-336 7-119 (191)
446 1b0u_A Histidine permease; ABC 89.1 0.19 6.6E-06 51.8 3.2 23 216-238 32-54 (262)
447 1a7j_A Phosphoribulokinase; tr 89.1 0.1 3.5E-06 54.8 1.1 24 215-238 4-27 (290)
448 1ltq_A Polynucleotide kinase; 89.0 0.2 6.8E-06 53.0 3.3 22 217-238 3-24 (301)
449 1ji0_A ABC transporter; ATP bi 89.0 0.19 6.4E-06 51.2 2.9 22 217-238 33-54 (240)
450 2vp4_A Deoxynucleoside kinase; 88.9 0.2 6.8E-06 50.6 3.1 25 214-238 18-42 (230)
451 2olj_A Amino acid ABC transpor 88.9 0.2 7E-06 51.6 3.2 23 216-238 50-72 (263)
452 1oix_A RAS-related protein RAB 88.9 0.19 6.5E-06 49.0 2.9 24 216-239 29-52 (191)
453 1mv5_A LMRA, multidrug resista 88.9 0.23 7.8E-06 50.6 3.5 23 216-238 28-50 (243)
454 3crm_A TRNA delta(2)-isopenten 88.9 0.2 6.9E-06 52.9 3.2 22 217-238 6-27 (323)
455 2j9r_A Thymidine kinase; TK1, 88.9 0.36 1.2E-05 47.5 4.7 111 215-336 27-139 (214)
456 1sgw_A Putative ABC transporte 88.9 0.16 5.5E-06 50.5 2.3 22 217-238 36-57 (214)
457 1g6h_A High-affinity branched- 88.9 0.19 6.5E-06 51.7 2.9 22 217-238 34-55 (257)
458 4g1u_C Hemin import ATP-bindin 88.9 0.19 6.4E-06 52.0 2.9 23 216-238 37-59 (266)
459 2r8r_A Sensor protein; KDPD, P 88.8 0.47 1.6E-05 47.1 5.5 105 217-335 7-127 (228)
460 4edh_A DTMP kinase, thymidylat 88.8 0.6 2.1E-05 46.3 6.4 23 216-238 6-28 (213)
461 2pze_A Cystic fibrosis transme 88.7 0.2 6.9E-06 50.5 2.9 22 217-238 35-56 (229)
462 3exa_A TRNA delta(2)-isopenten 88.6 0.24 8.1E-06 51.8 3.4 22 217-238 4-25 (322)
463 2d2e_A SUFC protein; ABC-ATPas 88.6 0.21 7E-06 51.2 3.0 22 217-238 30-51 (250)
464 2ff7_A Alpha-hemolysin translo 88.6 0.2 7E-06 51.1 2.9 22 217-238 36-57 (247)
465 1vpl_A ABC transporter, ATP-bi 88.6 0.22 7.6E-06 51.1 3.2 22 217-238 42-63 (256)
466 3rfe_A Platelet glycoprotein I 88.5 0.58 2E-05 42.2 5.5 50 608-660 12-66 (130)
467 3vr4_A V-type sodium ATPase ca 88.5 0.85 2.9E-05 51.4 7.9 48 215-266 231-279 (600)
468 2zu0_C Probable ATP-dependent 88.4 0.24 8.1E-06 51.3 3.2 22 217-238 47-68 (267)
469 2qi9_C Vitamin B12 import ATP- 88.4 0.22 7.4E-06 50.9 2.9 22 217-238 27-48 (249)
470 2ghi_A Transport protein; mult 88.3 0.23 8E-06 51.1 3.2 22 217-238 47-68 (260)
471 2qmh_A HPR kinase/phosphorylas 88.3 0.24 8.2E-06 48.0 2.9 23 216-238 34-56 (205)
472 1svi_A GTP-binding protein YSX 88.3 0.27 9.2E-06 47.9 3.5 26 214-239 21-46 (195)
473 2f9l_A RAB11B, member RAS onco 88.2 0.22 7.4E-06 48.9 2.7 24 216-239 5-28 (199)
474 2ixe_A Antigen peptide transpo 88.2 0.24 8.3E-06 51.3 3.2 23 216-238 45-67 (271)
475 2dyk_A GTP-binding protein; GT 88.1 0.25 8.5E-06 46.2 3.0 23 217-239 2-24 (161)
476 1q3t_A Cytidylate kinase; nucl 88.1 0.25 8.6E-06 50.1 3.2 25 214-238 14-38 (236)
477 2nq2_C Hypothetical ABC transp 88.1 0.23 7.8E-06 50.9 2.9 22 217-238 32-53 (253)
478 2c61_A A-type ATP synthase non 88.0 0.24 8.3E-06 54.8 3.2 90 215-304 151-258 (469)
479 2yz2_A Putative ABC transporte 88.0 0.25 8.6E-06 51.1 3.2 23 216-238 33-55 (266)
480 2eyu_A Twitching motility prot 88.0 0.29 9.8E-06 50.4 3.6 110 216-339 25-137 (261)
481 2v9p_A Replication protein E1; 88.0 0.25 8.4E-06 51.9 3.1 24 215-238 125-148 (305)
482 2ihy_A ABC transporter, ATP-bi 88.0 0.23 8E-06 51.6 2.9 22 217-238 48-69 (279)
483 3vkw_A Replicase large subunit 88.0 0.6 2.1E-05 51.4 6.3 26 213-238 158-183 (446)
484 3gqb_B V-type ATP synthase bet 87.9 0.28 9.4E-06 54.0 3.5 89 216-304 147-260 (464)
485 3ld9_A DTMP kinase, thymidylat 87.9 0.61 2.1E-05 46.5 5.8 26 214-239 19-44 (223)
486 1nlf_A Regulatory protein REPA 87.8 0.22 7.5E-06 52.0 2.6 23 216-238 30-52 (279)
487 2lkc_A Translation initiation 87.8 0.33 1.1E-05 46.3 3.8 26 214-239 6-31 (178)
488 1svm_A Large T antigen; AAA+ f 87.8 0.4 1.4E-05 52.1 4.8 24 215-238 168-191 (377)
489 1tf7_A KAIC; homohexamer, hexa 87.7 0.51 1.7E-05 54.3 5.9 114 215-335 280-417 (525)
490 3end_A Light-independent proto 87.7 0.51 1.7E-05 50.0 5.5 43 214-258 39-81 (307)
491 2wjg_A FEOB, ferrous iron tran 87.7 0.34 1.2E-05 46.8 3.8 25 215-239 6-30 (188)
492 2ocp_A DGK, deoxyguanosine kin 87.5 0.28 9.4E-06 50.0 3.1 23 216-238 2-24 (241)
493 2nzj_A GTP-binding protein REM 87.4 0.27 9.2E-06 46.8 2.8 23 217-239 5-27 (175)
494 3pqc_A Probable GTP-binding pr 87.4 0.33 1.1E-05 47.1 3.5 26 214-239 21-46 (195)
495 3nh6_A ATP-binding cassette SU 87.2 0.3 1E-05 51.5 3.2 23 216-238 80-102 (306)
496 3lv8_A DTMP kinase, thymidylat 87.1 0.67 2.3E-05 46.7 5.6 37 216-253 27-63 (236)
497 1fx0_A ATP synthase alpha chai 87.1 0.34 1.2E-05 54.0 3.7 86 215-304 162-264 (507)
498 2ce2_X GTPase HRAS; signaling 87.0 0.25 8.7E-06 46.3 2.4 22 218-239 5-26 (166)
499 3v9p_A DTMP kinase, thymidylat 87.0 0.54 1.9E-05 47.0 4.8 24 215-238 24-47 (227)
500 2pjz_A Hypothetical protein ST 86.9 0.3 1E-05 50.3 2.9 23 216-238 30-52 (263)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=3.4e-46 Score=439.76 Aligned_cols=318 Identities=19% Similarity=0.276 Sum_probs=254.9
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhc--chhhhccCCceEEEEeCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFN--DNEVRNHFNEKIWVCVSE 256 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~--~~~~~~~f~~~~wv~~s~ 256 (985)
..|||+.++++|.++|.... ....++|+|+||||+||||||+++|+ +.+++.+|+.++||++++
T Consensus 129 ~~~GR~~~~~~l~~~L~~~~--------------~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~ 194 (549)
T 2a5y_B 129 TCYIREYHVDRVIKKLDEMC--------------DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSG 194 (549)
T ss_dssp CSCCCHHHHHHHHHHHHHHT--------------TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCC
T ss_pred ccCCchHHHHHHHHHHhccc--------------CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECC
Confidence 43599999999999997543 34679999999999999999999998 678999999999999998
Q ss_pred CC--CHHHHHHHHHHHhcCCCC-------CCCCHHHHHHHHHHHhcCc-eEEEEecCCCCCCcccHHHHHhhhcCCCCCc
Q 001993 257 PF--DDIRIAKAILESLKGSAT-------NAVESETVLKQLRESIEGK-KFFLVLDDVWTEEPQNWEQLLGCLRCGSKES 326 (985)
Q Consensus 257 ~~--~~~~~~~~i~~~l~~~~~-------~~~~~~~~~~~l~~~l~~k-~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 326 (985)
.+ +...++..|+++++.... +..+.+++...+++.|+++ ||||||||||+.+...|.. .+||
T Consensus 195 ~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~--------~~gs 266 (549)
T 2a5y_B 195 TAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQ--------ELRL 266 (549)
T ss_dssp CSTTHHHHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHH--------HTTC
T ss_pred CCCCCHHHHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhcccc--------cCCC
Confidence 85 899999999999986421 2234567889999999996 9999999999743222322 2799
Q ss_pred EEEEEcCchhhHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHHHHHhhhh
Q 001993 327 RILVTTRNEKVAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVKTLGSLLR 406 (985)
Q Consensus 327 ~iivTtR~~~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~L~ 406 (985)
+||||||++.++..++.. ..+|+|++|+.++||+||.+.++... .++.+.+++.+|+++|+|+||||+++|+.|+
T Consensus 267 ~ilvTTR~~~v~~~~~~~-~~~~~l~~L~~~ea~~Lf~~~a~~~~----~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~ 341 (549)
T 2a5y_B 267 RCLVTTRDVEISNAASQT-CEFIEVTSLEIDECYDFLEAYGMPMP----VGEKEEDVLNKTIELSSGNPATLMMFFKSCE 341 (549)
T ss_dssp EEEEEESBGGGGGGCCSC-EEEEECCCCCHHHHHHHHHHTSCCCC------CHHHHHHHHHHHHHTTCHHHHHHHHTTCC
T ss_pred EEEEEcCCHHHHHHcCCC-CeEEECCCCCHHHHHHHHHHHhcCCC----CchhHHHHHHHHHHHhCCChHHHHHHHHHhc
Confidence 999999999999877532 15799999999999999999987652 2467788999999999999999999999997
Q ss_pred cCCChHHHHHHHHhhhhhhhccccccchhhhcccCCCCcchhHHHh-----------hhccCCCCcccChhHHHHHHhhc
Q 001993 407 FKGKIEEWQRVLENELWELEELDEGLLGPLLLSYLDLPPPLKKCFS-----------YCAIFPKDSRLEKDKLIRLWMAQ 475 (985)
Q Consensus 407 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl-----------~~a~fp~~~~i~~~~Li~~Wiae 475 (985)
.+ . .+|...+....+.. ...++.+++.+||++||+++|.||+ |||+||+++.|+ +++|+|+
T Consensus 342 ~~-~-w~~~~~l~~~l~~~--~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~ 413 (549)
T 2a5y_B 342 PK-T-FEKMAQLNNKLESR--GLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCV 413 (549)
T ss_dssp SS-S-HHHHHHHHHHHHHH--CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHH
T ss_pred cc-h-HHHHHHhHHHhhcc--cHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeee
Confidence 65 3 33434444433332 2456899999999999999999999 999999999999 8999999
Q ss_pred --CcccccC-ccch-hhHhHHHHHHHhhccccccccCCCCCCeEEEEecchHHHHHHHhhcccccc
Q 001993 476 --DYLKVKG-REDM-VVGEGYFENLAMRSLFQDFERSEHDGGKIISCQMHDMVHDFSQFLTKTECS 537 (985)
Q Consensus 476 --g~i~~~~-~~~~-~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~~~mHdlv~d~~~~~~~~e~~ 537 (985)
||+.... .... ++++ ||++|+++||++..... . ...|+|||++|++++.++.+++.
T Consensus 414 ~~G~i~~~~~~~~~~~~~~-~l~~L~~rsLl~~~~~~----~-~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 414 IPVDICSNEEEQLDDEVAD-RLKRLSKRGALLSGKRM----P-VLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp SCC-------CCCTHHHHH-HHHHTTTBSSCSEEECS----S-SCEEECCHHHHHHHHTTSCTHHH
T ss_pred ccceeccCCCCCCHHHHHH-HHHHHHHcCCeeEecCC----C-ceEEEeChHHHHHHHHHHHHHHH
Confidence 9998765 4445 5555 99999999999987543 1 34599999999999999887765
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=2.9e-37 Score=364.37 Aligned_cols=285 Identities=17% Similarity=0.207 Sum_probs=226.5
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCc-eEEEEeCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNE-KIWVCVSEP 257 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~-~~wv~~s~~ 257 (985)
-.|||+.++++|.++|...+ ..++|+|+||||+||||||+++|++.+++.+|+. ++|+++++.
T Consensus 129 ~~VGRe~eLeeL~elL~~~d----------------~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~ 192 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELR----------------PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNC 192 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCC----------------SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCS
T ss_pred CCCCcHHHHHHHHHHHhccC----------------CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCC
Confidence 35999999999999998432 3689999999999999999999987788999997 899999999
Q ss_pred CCHHHHHHHHHHHhcCCC---C---C-----CCCHHHHHHHHHHHh---cCceEEEEecCCCCCCcccHHHHHhhhcCCC
Q 001993 258 FDDIRIAKAILESLKGSA---T---N-----AVESETVLKQLRESI---EGKKFFLVLDDVWTEEPQNWEQLLGCLRCGS 323 (985)
Q Consensus 258 ~~~~~~~~~i~~~l~~~~---~---~-----~~~~~~~~~~l~~~l---~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~ 323 (985)
++...++..|++.+.... . + ..+.+.+...+++.| .++|+||||||||+ .+.|+.+ +
T Consensus 193 ~d~~~IL~~Ll~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd--~eqLe~f----~--- 263 (1221)
T 1vt4_I 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN--AKAWNAF----N--- 263 (1221)
T ss_dssp SSHHHHHHHHHHHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCC--HHHHHHH----H---
T ss_pred CCHHHHHHHHHHHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcCh--HHHHHhh----C---
Confidence 998888888887543210 0 1 012345566777766 68999999999997 3455543 2
Q ss_pred CCcEEEEEcCchhhHHhhcCcccccccCC------CCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhH
Q 001993 324 KESRILVTTRNEKVAIAIGTTKFNIIPIE------LLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLA 397 (985)
Q Consensus 324 ~gs~iivTtR~~~v~~~~~~~~~~~~~l~------~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLa 397 (985)
+||+||||||++.++..+... ..+.++ +|+.+|||+||.+.. +... .++..+| |+|+|||
T Consensus 264 pGSRILVTTRd~~Va~~l~g~--~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~~--------eeL~~eI---CgGLPLA 329 (1221)
T 1vt4_I 264 LSCKILLTTRFKQVTDFLSAA--TTTHISLDHHSMTLTPDEVKSLLLKYL-DCRP--------QDLPREV---LTTNPRR 329 (1221)
T ss_dssp SSCCEEEECSCSHHHHHHHHH--SSCEEEECSSSSCCCHHHHHHHHHHHH-CCCT--------TTHHHHH---CCCCHHH
T ss_pred CCeEEEEeccChHHHHhcCCC--eEEEecCccccCCcCHHHHHHHHHHHc-CCCH--------HHHHHHH---hCCCHHH
Confidence 689999999999998755433 356666 999999999999984 2211 1223333 9999999
Q ss_pred HHHHHhhhhcCC-ChHHHHHHHHhhhhhhhccccccchhhhcccCCCCcch-hHHHhhhccCCCCcccChhHHHHHHhhc
Q 001993 398 VKTLGSLLRFKG-KIEEWQRVLENELWELEELDEGLLGPLLLSYLDLPPPL-KKCFSYCAIFPKDSRLEKDKLIRLWMAQ 475 (985)
Q Consensus 398 i~~~~~~L~~~~-~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~-k~cfl~~a~fp~~~~i~~~~Li~~Wiae 475 (985)
|+++|+.|+.+. +..+|... ....+..+|.+||+.||++. |.||+|||+||+++.|+.+.++.+|+++
T Consensus 330 LkLaGs~Lr~k~~s~eeW~~~----------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~ae 399 (1221)
T 1vt4_I 330 LSIIAESIRDGLATWDNWKHV----------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDV 399 (1221)
T ss_dssp HHHHHHHHHHSCSSHHHHHHC----------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSS
T ss_pred HHHHHHHHhCCCCCHHHHhcC----------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCC
Confidence 999999998875 67788653 13458899999999999999 9999999999999999999999999998
Q ss_pred CcccccCccchhhHhHHHHHHHhhccccccccCCCCCCeEEEEecchHHHHHH
Q 001993 476 DYLKVKGREDMVVGEGYFENLAMRSLFQDFERSEHDGGKIISCQMHDMVHDFS 528 (985)
Q Consensus 476 g~i~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~~~mHdlv~d~~ 528 (985)
|. +.+..++++|+++||++.... ...|+|||++++++
T Consensus 400 Ge---------edAe~~L~eLvdRSLLq~d~~-------~~rYrMHDLllELr 436 (1221)
T 1vt4_I 400 IK---------SDVMVVVNKLHKYSLVEKQPK-------ESTISIPSIYLELK 436 (1221)
T ss_dssp CS---------HHHHHHHHHHHTSSSSSBCSS-------SSEEBCCCHHHHHH
T ss_pred CH---------HHHHHHHHHHHhhCCEEEeCC-------CCEEEehHHHHHHh
Confidence 71 357889999999999997311 12389999999865
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=4.1e-35 Score=384.15 Aligned_cols=308 Identities=24% Similarity=0.350 Sum_probs=242.9
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhh-hccCC-ceEEEEeCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEV-RNHFN-EKIWVCVSE 256 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~f~-~~~wv~~s~ 256 (985)
.||||++++++|.++|.... ..+++|+|+||||+||||||+++|++.+. ..+|. .++||++++
T Consensus 125 ~~vgR~~~~~~l~~~l~~~~---------------~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~ 189 (1249)
T 3sfz_A 125 IFVTRKKLVHAIQQKLWKLN---------------GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGK 189 (1249)
T ss_dssp SCCCCHHHHHHHHHHHHTTT---------------TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCS
T ss_pred eeccHHHHHHHHHHHHhhcc---------------CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECC
Confidence 79999999999999997443 46789999999999999999999997544 55565 577999988
Q ss_pred CCC--HHHHHHHHHHHhcCCC----CCCCCHHHHHHHHHHHhcCc--eEEEEecCCCCCCcccHHHHHhhhcCCCCCcEE
Q 001993 257 PFD--DIRIAKAILESLKGSA----TNAVESETVLKQLRESIEGK--KFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRI 328 (985)
Q Consensus 257 ~~~--~~~~~~~i~~~l~~~~----~~~~~~~~~~~~l~~~l~~k--~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 328 (985)
..+ ....+..++..+.... ....+.+.+...++..+.++ ||||||||||+. ..| ....+|++|
T Consensus 190 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~--~~~-------~~~~~~~~i 260 (1249)
T 3sfz_A 190 QDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP--WVL-------KAFDNQCQI 260 (1249)
T ss_dssp CCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH--HHH-------TTTCSSCEE
T ss_pred cCchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH--HHH-------HhhcCCCEE
Confidence 543 3455677777776542 22356788888999999877 999999999863 222 223678999
Q ss_pred EEEcCchhhHHhh-cCcccccccCCC-CChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHHHHHhhhh
Q 001993 329 LVTTRNEKVAIAI-GTTKFNIIPIEL-LSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVKTLGSLLR 406 (985)
Q Consensus 329 ivTtR~~~v~~~~-~~~~~~~~~l~~-L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~L~ 406 (985)
|||||++.++..+ +.. ..+++.+ |+.+||++||...++... +.+.+++++|+++|+|+||||+++|++|+
T Consensus 261 lvTtR~~~~~~~~~~~~--~~~~~~~~l~~~~a~~l~~~~~~~~~------~~~~~~~~~i~~~~~glPLal~~~~~~l~ 332 (1249)
T 3sfz_A 261 LLTTRDKSVTDSVMGPK--HVVPVESGLGREKGLEILSLFVNMKK------EDLPAEAHSIIKECKGSPLVVSLIGALLR 332 (1249)
T ss_dssp EEEESSTTTTTTCCSCB--CCEECCSSCCHHHHHHHHHHHHTSCS------TTCCTHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred EEEcCCHHHHHhhcCCc--eEEEecCCCCHHHHHHHHHHhhCCCh------hhCcHHHHHHHHHhCCCHHHHHHHHHHhh
Confidence 9999999998543 333 6789996 999999999999885432 23345689999999999999999999998
Q ss_pred cCCChHHHHHHHHhhhhhh----h----ccccccchhhhcccCCCCcchhHHHhhhccCCCCcccChhHHHHHHhhcCcc
Q 001993 407 FKGKIEEWQRVLENELWEL----E----ELDEGLLGPLLLSYLDLPPPLKKCFSYCAIFPKDSRLEKDKLIRLWMAQDYL 478 (985)
Q Consensus 407 ~~~~~~~w~~~~~~~~~~~----~----~~~~~~~~~l~~sy~~L~~~~k~cfl~~a~fp~~~~i~~~~Li~~Wiaeg~i 478 (985)
.+. ..|...++...... . .....+..+|.+||+.||+++|.||+|||+||+++.|+++.++.+|.++
T Consensus 333 ~~~--~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~--- 407 (1249)
T 3sfz_A 333 DFP--NRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE--- 407 (1249)
T ss_dssp HSS--SCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC---
T ss_pred cCh--hHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC---
Confidence 765 35666655432221 1 1113588899999999999999999999999999999999999999665
Q ss_pred cccCccchhhHhHHHHHHHhhccccccccCCCCCCeEEEEecchHHHHHHHhhcccc
Q 001993 479 KVKGREDMVVGEGYFENLAMRSLFQDFERSEHDGGKIISCQMHDMVHDFSQFLTKTE 535 (985)
Q Consensus 479 ~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~~~mHdlv~d~~~~~~~~e 535 (985)
.+.++.++++|++++|++.... +. ..+|+||+++|++++....++
T Consensus 408 -------~~~~~~~l~~L~~~sl~~~~~~----~~-~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 408 -------TEEVEDILQEFVNKSLLFCNRN----GK-SFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp -------HHHHHHHHHHHHHTTSCEEEES----SS-SEEEECCHHHHHHHHHHTGGG
T ss_pred -------HHHHHHHHHHHHhccceEEecC----CC-ceEEEecHHHHHHHHhhhhHH
Confidence 2567889999999999986543 33 456999999999999887655
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=6.7e-33 Score=332.16 Aligned_cols=306 Identities=24% Similarity=0.324 Sum_probs=231.4
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhh-hccCC-ceEEEEeCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEV-RNHFN-EKIWVCVSE 256 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~f~-~~~wv~~s~ 256 (985)
.||||+.++++|.++|.... ++.++|+|+||||+||||||.+++++.++ ..+|+ .++|++++.
T Consensus 125 ~~vGR~~~l~~L~~~L~~~~---------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~ 189 (591)
T 1z6t_A 125 VFVTRKKLVNAIQQKLSKLK---------------GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGK 189 (591)
T ss_dssp SCCCCHHHHHHHHHHHTTST---------------TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEES
T ss_pred eecccHHHHHHHHHHHhccc---------------CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCC
Confidence 79999999999999997432 45789999999999999999999997666 78895 699999977
Q ss_pred CCCHHHHHHHH---HHHhcCC----CCCCCCHHHHHHHHHHHhcC--ceEEEEecCCCCCCcccHHHHHhhhcCCCCCcE
Q 001993 257 PFDDIRIAKAI---LESLKGS----ATNAVESETVLKQLRESIEG--KKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESR 327 (985)
Q Consensus 257 ~~~~~~~~~~i---~~~l~~~----~~~~~~~~~~~~~l~~~l~~--k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 327 (985)
. +...++..+ +..++.. .....+.+.+...+...+.+ +++||||||+|+. ..+. ....|++
T Consensus 190 ~-~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~-----~~l~----~l~~~~~ 259 (591)
T 1z6t_A 190 Q-DKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS-----WVLK----AFDSQCQ 259 (591)
T ss_dssp C-CHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH-----HHHH----TTCSSCE
T ss_pred C-chHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH-----HHHH----HhcCCCe
Confidence 5 333444433 4444421 12334567778888888866 7899999999852 2222 2356899
Q ss_pred EEEEcCchhhHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHHHHHhhhhc
Q 001993 328 ILVTTRNEKVAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVKTLGSLLRF 407 (985)
Q Consensus 328 iivTtR~~~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~L~~ 407 (985)
||||||+..++..+......+..+++|+.+|+++||...++... ....+.+.+|+++|+|+||||..+|+.++.
T Consensus 260 ilvTsR~~~~~~~~~~~~~~v~~l~~L~~~ea~~L~~~~~~~~~------~~~~~~~~~i~~~~~G~PLal~~~a~~l~~ 333 (591)
T 1z6t_A 260 ILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVNMKK------ADLPEQAHSIIKECKGSPLVVSLIGALLRD 333 (591)
T ss_dssp EEEEESCGGGGTTCCSCEEEEECCSSCCHHHHHHHHHHHHTSCG------GGSCTHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred EEEECCCcHHHHhcCCCceEeecCCCCCHHHHHHHHHHHhCCCc------ccccHHHHHHHHHhCCCcHHHHHHHHHHhc
Confidence 99999999987665432112223469999999999999886421 122356889999999999999999999987
Q ss_pred CCChHHHHHHHHhhhhhh----h----ccccccchhhhcccCCCCcchhHHHhhhccCCCCcccChhHHHHHHhhcCccc
Q 001993 408 KGKIEEWQRVLENELWEL----E----ELDEGLLGPLLLSYLDLPPPLKKCFSYCAIFPKDSRLEKDKLIRLWMAQDYLK 479 (985)
Q Consensus 408 ~~~~~~w~~~~~~~~~~~----~----~~~~~~~~~l~~sy~~L~~~~k~cfl~~a~fp~~~~i~~~~Li~~Wiaeg~i~ 479 (985)
.. ..|...+....... . .....+..++..||+.||++.|.||++||+||+++.|+.+.+...|.++
T Consensus 334 ~~--~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~---- 407 (591)
T 1z6t_A 334 FP--NRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME---- 407 (591)
T ss_dssp ST--TCHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC----
T ss_pred Cc--hhHHHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC----
Confidence 64 35766665432211 0 1123578899999999999999999999999999999999999999653
Q ss_pred ccCccchhhHhHHHHHHHhhccccccccCCCCCCeEEEEecchHHHHHHHhhc
Q 001993 480 VKGREDMVVGEGYFENLAMRSLFQDFERSEHDGGKIISCQMHDMVHDFSQFLT 532 (985)
Q Consensus 480 ~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~~~mHdlv~d~~~~~~ 532 (985)
.+.+..++++|++++|++.... +. ...|+||+++++++....
T Consensus 408 ------~~~~~~~l~~L~~~~Ll~~~~~----~~-~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 408 ------TEEVEDILQEFVNKSLLFCDRN----GK-SFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp ------HHHHHHHHHHHHHTTSSEEEEE----TT-EEEEECCHHHHHHHHHHT
T ss_pred ------HHHHHHHHHHHHhCcCeEEecC----CC-ccEEEEcHHHHHHHHhhh
Confidence 2456789999999999985432 33 456999999999998773
No 5
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.90 E-value=4.3e-24 Score=256.95 Aligned_cols=365 Identities=16% Similarity=0.148 Sum_probs=227.4
Q ss_pred CCeEEEEEEcCCCCCccCCCccccCCCCceEEEccCcCC-----------------------------------------
Q 001993 551 WKARHLMITGETRSEMVPFPSMVYDETKLRSLVLDQRLS----------------------------------------- 589 (985)
Q Consensus 551 ~~~r~l~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~----------------------------------------- 589 (985)
..+..+.+.++.+.+ .++..+..+++|++|+++++..
T Consensus 81 ~~V~~L~L~~~~l~g--~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~ 158 (636)
T 4eco_A 81 GRVTGLSLEGFGASG--RVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDF 158 (636)
T ss_dssp CCEEEEECTTSCCEE--EECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGS
T ss_pred CCEEEEEecCcccCC--cCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhH
Confidence 467888888877743 3477889999999999988732
Q ss_pred ----------------------------------cchhhhHHHhhccCCcceeecCC--CCCC-----------------
Q 001993 590 ----------------------------------FKPRIALSKLFDRLTCLRSIDGL--PVGQ----------------- 616 (985)
Q Consensus 590 ----------------------------------~~~~~~~~~~~~~l~~Lr~L~l~--~~~~----------------- 616 (985)
..+.. +|..|.++++|++|+++ .+..
T Consensus 159 ~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~ 237 (636)
T 4eco_A 159 SDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQ 237 (636)
T ss_dssp CHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHH
T ss_pred HHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcc
Confidence 01112 45668899999999998 5666
Q ss_pred -CCcccc--cCCCCCeEecCCCCCccccchhhcCCCCCcEeeccCccccc--ccchhhhhc------cccceeecccccc
Q 001993 617 -IPKGIK--KLIHLRYLALGENPWIKELPEALCELCNLQTLDVSLCHYLK--RLPERIGQL------INLRHLMNSKEEW 685 (985)
Q Consensus 617 -lp~~i~--~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~--~lP~~i~~L------~~L~~L~l~~n~~ 685 (985)
+|..++ ++++|++|+|++|.....+|..++++++|++|++++|..+. .+|..++.| ++|++|++++|..
T Consensus 238 ~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l 317 (636)
T 4eco_A 238 YKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL 317 (636)
T ss_dssp HTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCC
T ss_pred cCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcC
Confidence 999999 99999999999998777899999999999999999997344 699999887 9999999996544
Q ss_pred cccccCCC--cCCCCCCCCccCceEecCCCcccccCCchhhhccccCcceeeecccccccCCCCcchhhhcccccccc-c
Q 001993 686 SRLSYMPR--GMERLTGLRTLGAFVASGGKSSKACSSLKSLNKLKHLEGSLTLRGLGNERDLGDDNDDEKVDLKSKMK-L 762 (985)
Q Consensus 686 ~~l~~~p~--~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~~~~l~~~~~-L 762 (985)
..+|. .++++++|++|++..+.... ... .+..+++|+.| .+.-+.+..+. ..+..+++ |
T Consensus 318 ---~~ip~~~~l~~l~~L~~L~L~~N~l~g--~ip-~~~~l~~L~~L--~L~~N~l~~lp----------~~l~~l~~~L 379 (636)
T 4eco_A 318 ---KTFPVETSLQKMKKLGMLECLYNQLEG--KLP-AFGSEIKLASL--NLAYNQITEIP----------ANFCGFTEQV 379 (636)
T ss_dssp ---SSCCCHHHHTTCTTCCEEECCSCCCEE--ECC-CCEEEEEESEE--ECCSSEEEECC----------TTSEEECTTC
T ss_pred ---CccCchhhhccCCCCCEEeCcCCcCcc--chh-hhCCCCCCCEE--ECCCCcccccc----------HhhhhhcccC
Confidence 57888 89999999999887655441 111 33444444433 22222221111 12334444 5
Q ss_pred ccEEEEEcCCCC--------------------cchhHhhhcCCC-------CCCCCCeEEEeeccCCCCCCCChhh-hcc
Q 001993 763 VDLHLRFDSTTK--------------------TKDHRVVLECLQ-------PPSSLEKLGIYGYAGDTISPTSDWM-LSL 814 (985)
Q Consensus 763 ~~L~l~~~~~~~--------------------~~~~~~~~~~l~-------~~~~L~~L~l~~~~~~~~~~~p~~~-~~l 814 (985)
+.|+++++.... .......+..+. .+.+|+.|++++|....+ |..+ ..+
T Consensus 380 ~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~l---p~~~~~~l 456 (636)
T 4eco_A 380 ENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKF---PKELFSTG 456 (636)
T ss_dssp CEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSC---CTHHHHTT
T ss_pred cEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcC---CHHHHccC
Confidence 555554443100 001111122233 344677777777666555 5443 346
Q ss_pred ccccEEeEeccCCCCcCCC--C-------CCCCccceeeccCCCCceEeCCccc--CCchhhhhhhhhhhcccccccCCC
Q 001993 815 AKLRVLTLRFCNECECLPP--L-------GKLPCLETLVLEGMSSVKRLGNGFL--GIAEDHQARADQAETASSIIRDTA 883 (985)
Q Consensus 815 ~~L~~L~L~~~~~~~~l~~--l-------~~l~~L~~L~L~~~~~l~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 883 (985)
++|+.|+|++|... .+|. + .++++|+.|+|++|. +..+|..+. ....+..+.++.+...........
T Consensus 457 ~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~ 534 (636)
T 4eco_A 457 SPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNK-LTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLN 534 (636)
T ss_dssp CCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSC-CCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGG
T ss_pred CCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCc-CCccChhhhhccCCCcCEEECCCCCCCCcChhhhc
Confidence 77777777777433 4542 1 123377777777754 556665554 444444445555544442223345
Q ss_pred CCccceeeccccc------cccccccccccCcccccccccceeecccccCCCCCCCCCCCCCcCeEEecCch
Q 001993 884 FPRLETLEFLDME------KWEEWDDCEIAGGKTIMPRLRHLSICWSPELKALPDYILGSTSLDKLLIYYSR 949 (985)
Q Consensus 884 fp~L~~L~l~~~~------~L~~~~~~~~~~~~~~lp~L~~L~i~~c~~L~~lp~~~~~l~~L~~L~i~~c~ 949 (985)
+++|+.|+++++. -...++. ....+++|+.|++++| .++.+|..+. ++|+.|+|++|+
T Consensus 535 l~~L~~L~Ls~N~~ls~N~l~~~~p~-----~l~~l~~L~~L~Ls~N-~l~~ip~~~~--~~L~~L~Ls~N~ 598 (636)
T 4eco_A 535 SSTLKGFGIRNQRDAQGNRTLREWPE-----GITLCPSLTQLQIGSN-DIRKVNEKIT--PNISVLDIKDNP 598 (636)
T ss_dssp CSSCCEEECCSCBCTTCCBCCCCCCT-----TGGGCSSCCEEECCSS-CCCBCCSCCC--TTCCEEECCSCT
T ss_pred CCCCCEEECCCCcccccCcccccChH-----HHhcCCCCCEEECCCC-cCCccCHhHh--CcCCEEECcCCC
Confidence 6666666664422 1112221 3345677777777776 3466775543 677777777775
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.90 E-value=2.3e-24 Score=265.63 Aligned_cols=391 Identities=18% Similarity=0.143 Sum_probs=219.4
Q ss_pred CCeEEEEEEcCCCCCccCCCccccC-CCCceEEEccCcCCcchhhhHHHhhccCCcceeecCCC--CC-CCCcc-cccCC
Q 001993 551 WKARHLMITGETRSEMVPFPSMVYD-ETKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGLP--VG-QIPKG-IKKLI 625 (985)
Q Consensus 551 ~~~r~l~l~~~~~~~~~~~~~~~~~-~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~--~~-~lp~~-i~~l~ 625 (985)
...+++.+.++...+ ..+..+.. +++|+.|+++++.. ....+..|.+++.|++|+++. +. .+|.. ++.++
T Consensus 269 ~~L~~L~L~~n~l~~--~ip~~~~~~~~~L~~L~Ls~n~l---~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~ 343 (768)
T 3rgz_A 269 KSLQYLSLAENKFTG--EIPDFLSGACDTLTGLDLSGNHF---YGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMR 343 (768)
T ss_dssp TTCCEEECCSSEEEE--SCCCCSCTTCTTCSEEECCSSEE---EECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCT
T ss_pred CCCCEEECcCCccCC--ccCHHHHhhcCcCCEEECcCCcC---CCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCC
Confidence 355666666555421 22444433 36777777776643 223445566777777777762 22 55654 67777
Q ss_pred CCCeEecCCCCCccccchhhcCCC-CCcEeeccCcccccccchhhhh--ccccceeecccccccccccCCCcCCCCCCCC
Q 001993 626 HLRYLALGENPWIKELPEALCELC-NLQTLDVSLCHYLKRLPERIGQ--LINLRHLMNSKEEWSRLSYMPRGMERLTGLR 702 (985)
Q Consensus 626 ~Lr~L~L~~~~~i~~lP~~i~~L~-~L~~L~l~~~~~l~~lP~~i~~--L~~L~~L~l~~n~~~~l~~~p~~i~~L~~L~ 702 (985)
+|++|++++|.....+|..+..+. +|++|++++|.....+|..+.. +++|++|++++|... ..+|..++++++|+
T Consensus 344 ~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~--~~~p~~l~~l~~L~ 421 (768)
T 3rgz_A 344 GLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT--GKIPPTLSNCSELV 421 (768)
T ss_dssp TCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEE--EECCGGGGGCTTCC
T ss_pred CCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccc--cccCHHHhcCCCCC
Confidence 777777777762236677676666 6777777777644455665655 667777777744332 35667777777777
Q ss_pred ccCceEecCCCcccccCCchhhhccccCcceeeecccccccCCCCcchhhhcccccccccccEEEEEcCCCCcchhHhhh
Q 001993 703 TLGAFVASGGKSSKACSSLKSLNKLKHLEGSLTLRGLGNERDLGDDNDDEKVDLKSKMKLVDLHLRFDSTTKTKDHRVVL 782 (985)
Q Consensus 703 ~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 782 (985)
.|++..+..... ....+..+++|+ .|.+....-. ......+..+++|+.|+++.+.. ...++
T Consensus 422 ~L~Ls~N~l~~~--~p~~l~~l~~L~----~L~L~~n~l~-------~~~p~~~~~l~~L~~L~L~~N~l-----~~~~p 483 (768)
T 3rgz_A 422 SLHLSFNYLSGT--IPSSLGSLSKLR----DLKLWLNMLE-------GEIPQELMYVKTLETLILDFNDL-----TGEIP 483 (768)
T ss_dssp EEECCSSEEESC--CCGGGGGCTTCC----EEECCSSCCC-------SCCCGGGGGCTTCCEEECCSSCC-----CSCCC
T ss_pred EEECcCCcccCc--ccHHHhcCCCCC----EEECCCCccc-------CcCCHHHcCCCCceEEEecCCcc-----cCcCC
Confidence 777765433221 111233333333 3443322110 11123456677888888877651 12234
Q ss_pred cCCCCCCCCCeEEEeeccCCCCCCCChhhhccccccEEeEeccCCCCcCC-CCCCCCccceeeccCCCCceEeCCcccCC
Q 001993 783 ECLQPPSSLEKLGIYGYAGDTISPTSDWMLSLAKLRVLTLRFCNECECLP-PLGKLPCLETLVLEGMSSVKRLGNGFLGI 861 (985)
Q Consensus 783 ~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~l~~~~~~~ 861 (985)
..+..+++|+.|++++|...... |.|+..+++|+.|+|++|.....+| .++.+++|+.|+|++|+-...+|..++..
T Consensus 484 ~~l~~l~~L~~L~L~~N~l~~~~--p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~ 561 (768)
T 3rgz_A 484 SGLSNCTNLNWISLSNNRLTGEI--PKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ 561 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCCSCC--CGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTT
T ss_pred HHHhcCCCCCEEEccCCccCCcC--ChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcc
Confidence 45666788899999888866332 8888888899999998886665666 47888889999988876443555443221
Q ss_pred ch----------------------------------------------------------------------hhhhhhhh
Q 001993 862 AE----------------------------------------------------------------------DHQARADQ 871 (985)
Q Consensus 862 ~~----------------------------------------------------------------------~~~~~~~~ 871 (985)
.. +..+.++.
T Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~ 641 (768)
T 3rgz_A 562 SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSY 641 (768)
T ss_dssp TTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCS
T ss_pred cchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcC
Confidence 10 01111111
Q ss_pred hhcccccc-cCCCCCccceeeccccccccccccccccCcccccccccceeecccccCCCCCCCCCCCCCcCeEEecCchh
Q 001993 872 AETASSII-RDTAFPRLETLEFLDMEKWEEWDDCEIAGGKTIMPRLRHLSICWSPELKALPDYILGSTSLDKLLIYYSRH 950 (985)
Q Consensus 872 ~~~~~~~~-~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~lp~L~~L~i~~c~~L~~lp~~~~~l~~L~~L~i~~c~~ 950 (985)
+.....++ ..+.+++|+.|+|+++.--..++. ..+.+++|+.|++++|.....+|..+.++++|+.|+|++|+.
T Consensus 642 N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~-----~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l 716 (768)
T 3rgz_A 642 NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD-----EVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 716 (768)
T ss_dssp SCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCG-----GGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEE
T ss_pred CcccccCCHHHhccccCCEEeCcCCccCCCCCh-----HHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcc
Confidence 22111111 123345555555555321112222 445778888888888855557888888888888888887641
Q ss_pred -----------------------h----hhhhcCCCCCCCCCcCCcCcee
Q 001993 951 -----------------------L----NNRYNMETGPEWPKISHVPNIS 973 (985)
Q Consensus 951 -----------------------l----~~~~~~~~~~~~~~i~h~p~~~ 973 (985)
+ -..|....+++|.+|+|+|+++
T Consensus 717 ~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~~~~~~~~ 766 (768)
T 3rgz_A 717 SGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRSHHHH 766 (768)
T ss_dssp EEECCSSSSGGGSCGGGGCSCTEEESTTSCCCCSCC--------------
T ss_pred cccCCCchhhccCCHHHhcCCchhcCCCCcCCCCCccCCCCCCCCccccC
Confidence 1 0136667889999999999865
No 7
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.89 E-value=1.6e-23 Score=255.87 Aligned_cols=323 Identities=15% Similarity=0.152 Sum_probs=203.4
Q ss_pred HHHhhccCCcceeecCC--CCCC------------------CCcccc--cCCCCCeEecCCCCCccccchhhcCCCCCcE
Q 001993 596 LSKLFDRLTCLRSIDGL--PVGQ------------------IPKGIK--KLIHLRYLALGENPWIKELPEALCELCNLQT 653 (985)
Q Consensus 596 ~~~~~~~l~~Lr~L~l~--~~~~------------------lp~~i~--~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~ 653 (985)
+|..|.++++|++|+++ .+.. +|..++ ++++|++|+|++|.....+|..+++|++|++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 45568888899999988 5665 888887 8999999999988867788988999999999
Q ss_pred eeccCccccc--ccchhhhhcc-------ccceeecccccccccccCCC--cCCCCCCCCccCceEecCCCcccccCCch
Q 001993 654 LDVSLCHYLK--RLPERIGQLI-------NLRHLMNSKEEWSRLSYMPR--GMERLTGLRTLGAFVASGGKSSKACSSLK 722 (985)
Q Consensus 654 L~l~~~~~l~--~lP~~i~~L~-------~L~~L~l~~n~~~~l~~~p~--~i~~L~~L~~L~~~~~~~~~~~~~~~~l~ 722 (985)
|+|++|..+. .+|..++.++ +|++|++++|.. ..+|. .++++++|+.|++..+.... .. .+.
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L---~~ip~~~~l~~L~~L~~L~Ls~N~l~~---lp-~~~ 592 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL---EEFPASASLQKMVKLGLLDCVHNKVRH---LE-AFG 592 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC---CBCCCHHHHTTCTTCCEEECTTSCCCB---CC-CCC
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC---CccCChhhhhcCCCCCEEECCCCCccc---ch-hhc
Confidence 9999886344 5888888777 899999985544 47888 78888888888886655442 21 344
Q ss_pred hhhccccCcceeeecccccccCCCCcchhhhcccccccc-cccEEEEEcCCCCcc--------------------hh---
Q 001993 723 SLNKLKHLEGSLTLRGLGNERDLGDDNDDEKVDLKSKMK-LVDLHLRFDSTTKTK--------------------DH--- 778 (985)
Q Consensus 723 ~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~--------------------~~--- 778 (985)
.+++|+.| .+.-+.+..+. ..+..+++ |+.|+++.|....-. ..
T Consensus 593 ~L~~L~~L--~Ls~N~l~~lp----------~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~i 660 (876)
T 4ecn_A 593 TNVKLTDL--KLDYNQIEEIP----------EDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEG 660 (876)
T ss_dssp TTSEESEE--ECCSSCCSCCC----------TTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTS
T ss_pred CCCcceEE--ECcCCccccch----------HHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCcc
Confidence 44444433 22222222111 12334444 555555544310000 00
Q ss_pred HhhhcCCC--CCCCCCeEEEeeccCCCCCCCChhhh-ccccccEEeEeccCCCCcCCC---------CCCCCccceeecc
Q 001993 779 RVVLECLQ--PPSSLEKLGIYGYAGDTISPTSDWML-SLAKLRVLTLRFCNECECLPP---------LGKLPCLETLVLE 846 (985)
Q Consensus 779 ~~~~~~l~--~~~~L~~L~l~~~~~~~~~~~p~~~~-~l~~L~~L~L~~~~~~~~l~~---------l~~l~~L~~L~L~ 846 (985)
..+...+. ...+|+.|++++|....+ |.++. .+++|+.|+|++|. +..+|. +.+|++|+.|+|+
T Consensus 661 p~l~~~l~~~~~~~L~~L~Ls~N~L~~l---p~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~~~~~~~l~nl~~L~~L~Ls 736 (876)
T 4ecn_A 661 RNISCSMDDYKGINASTVTLSYNEIQKF---PTELFATGSPISTIILSNNL-MTSIPENSLKPKDGNYKNTYLLTTIDLR 736 (876)
T ss_dssp SSCSSCTTTCCCCCEEEEECCSSCCCSC---CHHHHHTTCCCSEEECCSCC-CSCCCTTSSSCTTSCCTTGGGCCEEECC
T ss_pred ccchhhhccccCCCcCEEEccCCcCCcc---CHHHHccCCCCCEEECCCCc-CCccChHHhccccccccccCCccEEECC
Confidence 00001111 234788888888777666 76654 67888888888884 345553 1234488888888
Q ss_pred CCCCceEeCCccc--CCchhhhhhhhhhhcccccccCCCCCccceeecccccc------ccccccccccCcccccccccc
Q 001993 847 GMSSVKRLGNGFL--GIAEDHQARADQAETASSIIRDTAFPRLETLEFLDMEK------WEEWDDCEIAGGKTIMPRLRH 918 (985)
Q Consensus 847 ~~~~l~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~------L~~~~~~~~~~~~~~lp~L~~ 918 (985)
+|. +..+|..+. ....+..+.++.+...........+++|+.|+|+++.. ...++. ....+++|+.
T Consensus 737 ~N~-L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~-----~l~~L~~L~~ 810 (876)
T 4ecn_A 737 FNK-LTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPT-----GITTCPSLIQ 810 (876)
T ss_dssp SSC-CCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCT-----TGGGCSSCCE
T ss_pred CCC-CccchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChH-----HHhcCCCCCE
Confidence 864 667776654 44445555555555544322345677777777765331 112221 3446777888
Q ss_pred eeecccccCCCCCCCCCCCCCcCeEEecCchh
Q 001993 919 LSICWSPELKALPDYILGSTSLDKLLIYYSRH 950 (985)
Q Consensus 919 L~i~~c~~L~~lp~~~~~l~~L~~L~i~~c~~ 950 (985)
|++++| .+..+|..+. ++|+.|+|++|+.
T Consensus 811 L~Ls~N-~L~~Ip~~l~--~~L~~LdLs~N~l 839 (876)
T 4ecn_A 811 LQIGSN-DIRKVDEKLT--PQLYILDIADNPN 839 (876)
T ss_dssp EECCSS-CCCBCCSCCC--SSSCEEECCSCTT
T ss_pred EECCCC-CCCccCHhhc--CCCCEEECCCCCC
Confidence 888777 3477776644 5778888887763
No 8
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.89 E-value=5.6e-23 Score=251.02 Aligned_cols=364 Identities=15% Similarity=0.132 Sum_probs=241.9
Q ss_pred CCeEEEEEEcCCCCCcc---------------CCCcccc--CCCCceEEEccCcCCcchhhhHHHhhccCCcceeecCCC
Q 001993 551 WKARHLMITGETRSEMV---------------PFPSMVY--DETKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGLP 613 (985)
Q Consensus 551 ~~~r~l~l~~~~~~~~~---------------~~~~~~~--~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~ 613 (985)
..++.|.+.++.+.... .+|..+. ++++|+.|.+++|.. ...+|..|.++++|+.|+++.
T Consensus 448 ~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l---~~~iP~~l~~L~~L~~L~Ls~ 524 (876)
T 4ecn_A 448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPN---MTQLPDFLYDLPELQSLNIAC 524 (876)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTT---CCSCCGGGGGCSSCCEEECTT
T ss_pred CCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCC---CccChHHHhCCCCCCEEECcC
Confidence 46788888888774310 1566655 888999999988753 233566788899999999983
Q ss_pred ---CC--CCCcccccCC-------CCCeEecCCCCCccccch--hhcCCCCCcEeeccCcccccccchhhhhccccceee
Q 001993 614 ---VG--QIPKGIKKLI-------HLRYLALGENPWIKELPE--ALCELCNLQTLDVSLCHYLKRLPERIGQLINLRHLM 679 (985)
Q Consensus 614 ---~~--~lp~~i~~l~-------~Lr~L~L~~~~~i~~lP~--~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~ 679 (985)
+. .+|..++.+. +|++|+|++|. +..+|. .++++++|++|+|++|. +..+| .++.+++|++|+
T Consensus 525 N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-~~~~L~~L~~L~ 601 (876)
T 4ecn_A 525 NRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNK-VRHLE-AFGTNVKLTDLK 601 (876)
T ss_dssp CTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTSC-CCBCC-CCCTTSEESEEE
T ss_pred CCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCCC-cccch-hhcCCCcceEEE
Confidence 33 4787777666 89999999998 778988 89999999999999988 66888 788899999999
Q ss_pred cccccccccccCCCcCCCCCC-CCccCceEecCCCcccccCCchhhh--ccccCcceeeecccccccCCCCcchhhhccc
Q 001993 680 NSKEEWSRLSYMPRGMERLTG-LRTLGAFVASGGKSSKACSSLKSLN--KLKHLEGSLTLRGLGNERDLGDDNDDEKVDL 756 (985)
Q Consensus 680 l~~n~~~~l~~~p~~i~~L~~-L~~L~~~~~~~~~~~~~~~~l~~L~--~L~~L~~~L~i~~l~~~~~~~~~~~~~~~~l 756 (985)
+++|.. ..+|..+.++++ |+.|++..+.....+ ..+..+. +|+.| .+.-+.+.... +... .....
T Consensus 602 Ls~N~l---~~lp~~l~~l~~~L~~L~Ls~N~L~~lp---~~~~~~~~~~L~~L--~Ls~N~l~g~i--p~l~--~~l~~ 669 (876)
T 4ecn_A 602 LDYNQI---EEIPEDFCAFTDQVEGLGFSHNKLKYIP---NIFNAKSVYVMGSV--DFSYNKIGSEG--RNIS--CSMDD 669 (876)
T ss_dssp CCSSCC---SCCCTTSCEECTTCCEEECCSSCCCSCC---SCCCTTCSSCEEEE--ECCSSCTTTTS--SSCS--SCTTT
T ss_pred CcCCcc---ccchHHHhhccccCCEEECcCCCCCcCc---hhhhccccCCCCEE--ECcCCcCCCcc--ccch--hhhcc
Confidence 986544 478888888888 999988766544321 1222222 24433 22222221110 0000 00111
Q ss_pred ccccccccEEEEEcCCCCcchhHhhhcC-CCCCCCCCeEEEeeccCCCCCCCChhhhc--------cccccEEeEeccCC
Q 001993 757 KSKMKLVDLHLRFDSTTKTKDHRVVLEC-LQPPSSLEKLGIYGYAGDTISPTSDWMLS--------LAKLRVLTLRFCNE 827 (985)
Q Consensus 757 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~p~~~~~--------l~~L~~L~L~~~~~ 827 (985)
..+.+|+.|+++.|... .++.. +..+++|+.|++++|....+ |.++.. +++|+.|+|++|.
T Consensus 670 ~~~~~L~~L~Ls~N~L~------~lp~~~~~~l~~L~~L~Ls~N~L~~i---p~~~~~~~~~~l~nl~~L~~L~Ls~N~- 739 (876)
T 4ecn_A 670 YKGINASTVTLSYNEIQ------KFPTELFATGSPISTIILSNNLMTSI---PENSLKPKDGNYKNTYLLTTIDLRFNK- 739 (876)
T ss_dssp CCCCCEEEEECCSSCCC------SCCHHHHHTTCCCSEEECCSCCCSCC---CTTSSSCTTSCCTTGGGCCEEECCSSC-
T ss_pred ccCCCcCEEEccCCcCC------ccCHHHHccCCCCCEEECCCCcCCcc---ChHHhccccccccccCCccEEECCCCC-
Confidence 13458899999877621 11111 12568999999999987766 765543 3499999999995
Q ss_pred CCcCCC-CC--CCCccceeeccCCCCceEeCCcccCCchhhhhhhhh------hhcccccc-cCCCCCccceeecccccc
Q 001993 828 CECLPP-LG--KLPCLETLVLEGMSSVKRLGNGFLGIAEDHQARADQ------AETASSII-RDTAFPRLETLEFLDMEK 897 (985)
Q Consensus 828 ~~~l~~-l~--~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~------~~~~~~~~-~~~~fp~L~~L~l~~~~~ 897 (985)
+..+|. +. .+++|+.|+|++|. +..+|..+.....+..+.++. +......+ ....+++|+.|+|+++.
T Consensus 740 L~~lp~~l~~~~l~~L~~L~Ls~N~-L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~- 817 (876)
T 4ecn_A 740 LTSLSDDFRATTLPYLSNMDVSYNC-FSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND- 817 (876)
T ss_dssp CCCCCGGGSTTTCTTCCEEECCSSC-CSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-
T ss_pred CccchHHhhhccCCCcCEEEeCCCC-CCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCC-
Confidence 456774 54 89999999999976 666887776666666555544 22222222 23568999999999964
Q ss_pred ccccccccccCcccccccccceeecccccCCCCCCC--------CCCCCCcCeEEecCchhh
Q 001993 898 WEEWDDCEIAGGKTIMPRLRHLSICWSPELKALPDY--------ILGSTSLDKLLIYYSRHL 951 (985)
Q Consensus 898 L~~~~~~~~~~~~~~lp~L~~L~i~~c~~L~~lp~~--------~~~l~~L~~L~i~~c~~l 951 (985)
+..++. . .+++|+.|+|++|+...--+.. ...+..-+..+|.+|+.+
T Consensus 818 L~~Ip~-----~--l~~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~I~gC~~L 872 (876)
T 4ecn_A 818 IRKVDE-----K--LTPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDAL 872 (876)
T ss_dssp CCBCCS-----C--CCSSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSEEESCGGG
T ss_pred CCccCH-----h--hcCCCCEEECCCCCCCccChHHccccccchheeecCCCccccCCCCCc
Confidence 455554 1 3489999999999643321111 111222234478899876
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.88 E-value=4.5e-22 Score=239.48 Aligned_cols=129 Identities=19% Similarity=0.189 Sum_probs=102.8
Q ss_pred CCCeEEEEEEcCCCCCccCCCccccCCCCceEEEccCcCCcchhhhHHHhhccCCcceeecCC--CCCCC-CcccccCCC
Q 001993 550 SWKARHLMITGETRSEMVPFPSMVYDETKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL--PVGQI-PKGIKKLIH 626 (985)
Q Consensus 550 ~~~~r~l~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~--~~~~l-p~~i~~l~~ 626 (985)
+..++++.+.++.+.... +..+.++++|++|+++++.. ....+..|.++++|++|+++ .+..+ |..|+++++
T Consensus 31 ~~~l~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l---~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 105 (606)
T 3vq2_A 31 PSSTKNIDLSFNPLKILK--SYSFSNFSELQWLDLSRCEI---ETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTS 105 (606)
T ss_dssp CTTCCEEECTTSCCCEEC--TTTTTTCTTCCEEECTTCCC---CEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTT
T ss_pred CCCcCEEECCCCCcCEeC--hhhccCCccCcEEeCCCCcc---cccCHHHhhchhhcCEeECCCCcccccChhhcCCccc
Confidence 467888988888774322 44678899999999998864 33345668889999999998 56666 778999999
Q ss_pred CCeEecCCCCCccccc-hhhcCCCCCcEeeccCccccc--ccchhhhhccccceeecccccc
Q 001993 627 LRYLALGENPWIKELP-EALCELCNLQTLDVSLCHYLK--RLPERIGQLINLRHLMNSKEEW 685 (985)
Q Consensus 627 Lr~L~L~~~~~i~~lP-~~i~~L~~L~~L~l~~~~~l~--~lP~~i~~L~~L~~L~l~~n~~ 685 (985)
|++|++++|. +..+| ..++++++|++|++++|. +. .+|..++++++|++|++++|..
T Consensus 106 L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~Ls~n~l 165 (606)
T 3vq2_A 106 LENLVAVETK-LASLESFPIGQLITLKKLNVAHNF-IHSCKLPAYFSNLTNLVHVDLSYNYI 165 (606)
T ss_dssp CCEEECTTSC-CCCSSSSCCTTCTTCCEEECCSSC-CCCCCCCGGGGTCTTCCEEECCSSCC
T ss_pred CCEEEccCCc-cccccccccCCCCCCCEEeCCCCc-ccceechHhHhhcCCCCEEEccCCcc
Confidence 9999999998 77766 678899999999999988 54 5788899999999999986644
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.88 E-value=8.1e-23 Score=245.82 Aligned_cols=367 Identities=15% Similarity=0.142 Sum_probs=253.2
Q ss_pred CCCeEEEEEEcCCCCCc---------------cCCCcccc--CCCCceEEEccCcCCcchhhhHHHhhccCCcceeecCC
Q 001993 550 SWKARHLMITGETRSEM---------------VPFPSMVY--DETKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL 612 (985)
Q Consensus 550 ~~~~r~l~l~~~~~~~~---------------~~~~~~~~--~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~ 612 (985)
....+.+.+.++.+.+. ...|..+. ++++|+.|.++++.. ...+|..|.++++|++|+++
T Consensus 205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l---~~~~p~~l~~l~~L~~L~Ls 281 (636)
T 4eco_A 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPN---LTKLPTFLKALPEMQLINVA 281 (636)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTT---CSSCCTTTTTCSSCCEEECT
T ss_pred ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcC---CccChHHHhcCCCCCEEECc
Confidence 35789999999887431 00577777 899999999999864 23356778999999999999
Q ss_pred C---CC--CCCcccccC------CCCCeEecCCCCCccccch--hhcCCCCCcEeeccCccccc-ccchhhhhcccccee
Q 001993 613 P---VG--QIPKGIKKL------IHLRYLALGENPWIKELPE--ALCELCNLQTLDVSLCHYLK-RLPERIGQLINLRHL 678 (985)
Q Consensus 613 ~---~~--~lp~~i~~l------~~Lr~L~L~~~~~i~~lP~--~i~~L~~L~~L~l~~~~~l~-~lP~~i~~L~~L~~L 678 (985)
. +. .+|..++.+ ++|++|++++|. +..+|. .++++++|++|++++|. +. .+| .++.+++|++|
T Consensus 282 ~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~L~~N~-l~g~ip-~~~~l~~L~~L 358 (636)
T 4eco_A 282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYNQ-LEGKLP-AFGSEIKLASL 358 (636)
T ss_dssp TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEEECCSCC-CEEECC-CCEEEEEESEE
T ss_pred CCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhhccCCCCCEEeCcCCc-Cccchh-hhCCCCCCCEE
Confidence 4 44 588888887 999999999998 889999 89999999999999998 65 899 89999999999
Q ss_pred ecccccccccccCCCcCCCCCC-CCccCceEecCCCcccccCCchh--hhccccCcceeeecccccccCCCCcchhhhcc
Q 001993 679 MNSKEEWSRLSYMPRGMERLTG-LRTLGAFVASGGKSSKACSSLKS--LNKLKHLEGSLTLRGLGNERDLGDDNDDEKVD 755 (985)
Q Consensus 679 ~l~~n~~~~l~~~p~~i~~L~~-L~~L~~~~~~~~~~~~~~~~l~~--L~~L~~L~~~L~i~~l~~~~~~~~~~~~~~~~ 755 (985)
++++|.. ..+|..++.+++ |++|++..+.....+. .+.. +.+|+.| .+.-+.+..... ..-......
T Consensus 359 ~L~~N~l---~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~---~~~~~~l~~L~~L--~Ls~N~l~~~~p--~~l~~~~~~ 428 (636)
T 4eco_A 359 NLAYNQI---TEIPANFCGFTEQVENLSFAHNKLKYIPN---IFDAKSVSVMSAI--DFSYNEIGSVDG--KNFDPLDPT 428 (636)
T ss_dssp ECCSSEE---EECCTTSEEECTTCCEEECCSSCCSSCCS---CCCTTCSSCEEEE--ECCSSCTTTTTT--CSSCTTCSS
T ss_pred ECCCCcc---ccccHhhhhhcccCcEEEccCCcCcccch---hhhhcccCccCEE--ECcCCcCCCcch--hhhcccccc
Confidence 9996544 588999999999 9999998766553221 2222 2244433 232222221100 000000011
Q ss_pred cccccccccEEEEEcCCCCcchhHhhhcC-CCCCCCCCeEEEeeccCCCCCCCChhhhc--------cccccEEeEeccC
Q 001993 756 LKSKMKLVDLHLRFDSTTKTKDHRVVLEC-LQPPSSLEKLGIYGYAGDTISPTSDWMLS--------LAKLRVLTLRFCN 826 (985)
Q Consensus 756 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~p~~~~~--------l~~L~~L~L~~~~ 826 (985)
...+.+|+.|+++.+.-. .++.. +..+++|+.|++++|....+ |.++.. +++|+.|+|++|.
T Consensus 429 ~~~~~~L~~L~Ls~N~l~------~lp~~~~~~l~~L~~L~Ls~N~l~~i---~~~~~~~~~~~~~~l~~L~~L~Ls~N~ 499 (636)
T 4eco_A 429 PFKGINVSSINLSNNQIS------KFPKELFSTGSPLSSINLMGNMLTEI---PKNSLKDENENFKNTYLLTSIDLRFNK 499 (636)
T ss_dssp CCCCCCEEEEECCSSCCC------SCCTHHHHTTCCCSEEECCSSCCSBC---CSSSSEETTEECTTGGGCCEEECCSSC
T ss_pred cccCCCCCEEECcCCccC------cCCHHHHccCCCCCEEECCCCCCCCc---CHHHhccccccccccCCccEEECcCCc
Confidence 115668999999877621 11111 23468999999999988766 654432 3399999999995
Q ss_pred CCCcCCC-CC--CCCccceeeccCCCCceEeCCcccCCchhhhhhhhh------hhcccccc-cCCCCCccceeeccccc
Q 001993 827 ECECLPP-LG--KLPCLETLVLEGMSSVKRLGNGFLGIAEDHQARADQ------AETASSII-RDTAFPRLETLEFLDME 896 (985)
Q Consensus 827 ~~~~l~~-l~--~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~------~~~~~~~~-~~~~fp~L~~L~l~~~~ 896 (985)
. +.+|. +. .+++|+.|+|++|. +..+|..+.....+..+.++. +......+ ....+++|++|+++++.
T Consensus 500 l-~~lp~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 577 (636)
T 4eco_A 500 L-TKLSDDFRATTLPYLVGIDLSYNS-FSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND 577 (636)
T ss_dssp C-CBCCGGGSTTTCTTCCEEECCSSC-CSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC
T ss_pred C-CccChhhhhccCCCcCEEECCCCC-CCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCc
Confidence 4 47774 54 89999999999976 556887776666666555533 22222222 23568999999999864
Q ss_pred cccccccccccCcccccccccceeecccccCCCCC---------CCCCCCCCcCeEEecCchhhh
Q 001993 897 KWEEWDDCEIAGGKTIMPRLRHLSICWSPELKALP---------DYILGSTSLDKLLIYYSRHLN 952 (985)
Q Consensus 897 ~L~~~~~~~~~~~~~~lp~L~~L~i~~c~~L~~lp---------~~~~~l~~L~~L~i~~c~~l~ 952 (985)
+..++. . .+++|+.|++++|+.. .++ .....+...+..+|.+|+.|.
T Consensus 578 -l~~ip~-----~--~~~~L~~L~Ls~N~l~-~~~~~~~~~~~~~~~~~l~~~~~~~i~~C~~L~ 633 (636)
T 4eco_A 578 -IRKVNE-----K--ITPNISVLDIKDNPNI-SIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALD 633 (636)
T ss_dssp -CCBCCS-----C--CCTTCCEEECCSCTTC-EEECTTTHHHHHTTCCEEECCTTSEEESCGGGC
T ss_pred -CCccCH-----h--HhCcCCEEECcCCCCc-cccHHhcchhhhcccceeecCCccccCCCcccc
Confidence 455544 1 3489999999999533 322 111122334566888998763
No 11
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.87 E-value=1.2e-21 Score=235.82 Aligned_cols=350 Identities=20% Similarity=0.202 Sum_probs=205.9
Q ss_pred CCccccCCCCceEEEccCcCCcchhhhHHHhhccCCcceeecCC--CCCCC-CcccccCCCCCeEecCCCCCcccc-chh
Q 001993 569 FPSMVYDETKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL--PVGQI-PKGIKKLIHLRYLALGENPWIKEL-PEA 644 (985)
Q Consensus 569 ~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~--~~~~l-p~~i~~l~~Lr~L~L~~~~~i~~l-P~~ 644 (985)
+|..+. +++++|+++++.. ....+..|.++++|++|+++ .+..+ |..++++++|++|+|++|. +..+ |..
T Consensus 26 ip~~~~--~~l~~L~Ls~n~l---~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~ 99 (606)
T 3vq2_A 26 VPDDIP--SSTKNIDLSFNPL---KILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP-IQSFSPGS 99 (606)
T ss_dssp CCTTSC--TTCCEEECTTSCC---CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCCCCTTS
T ss_pred CCCCCC--CCcCEEECCCCCc---CEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCc-ccccChhh
Confidence 454433 7899999999874 33345568999999999999 56666 5679999999999999999 7776 888
Q ss_pred hcCCCCCcEeeccCcccccccc-hhhhhccccceeecccccccccccCCCcCCCCCCCCccCceEecCCCcccccCCchh
Q 001993 645 LCELCNLQTLDVSLCHYLKRLP-ERIGQLINLRHLMNSKEEWSRLSYMPRGMERLTGLRTLGAFVASGGKSSKACSSLKS 723 (985)
Q Consensus 645 i~~L~~L~~L~l~~~~~l~~lP-~~i~~L~~L~~L~l~~n~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~ 723 (985)
+++|++|++|++++|. +..+| ..++++++|++|++++|.... ..+|..++++++|++|++..+..... ....+..
T Consensus 100 ~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~lp~~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~ 175 (606)
T 3vq2_A 100 FSGLTSLENLVAVETK-LASLESFPIGQLITLKKLNVAHNFIHS-CKLPAYFSNLTNLVHVDLSYNYIQTI--TVNDLQF 175 (606)
T ss_dssp STTCTTCCEEECTTSC-CCCSSSSCCTTCTTCCEEECCSSCCCC-CCCCGGGGTCTTCCEEECCSSCCCEE--CTTTTHH
T ss_pred cCCcccCCEEEccCCc-cccccccccCCCCCCCEEeCCCCcccc-eechHhHhhcCCCCEEEccCCcceec--Chhhhhh
Confidence 9999999999999998 66665 678999999999999665432 25788999999999999877654431 1123555
Q ss_pred hhccccCcceeeecc--cccccCCCCcchhhhcccccccccccEEEEEcCCC----------------------------
Q 001993 724 LNKLKHLEGSLTLRG--LGNERDLGDDNDDEKVDLKSKMKLVDLHLRFDSTT---------------------------- 773 (985)
Q Consensus 724 L~~L~~L~~~L~i~~--l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~---------------------------- 773 (985)
+.+|+..-..+.+.. +..+.. ..+ ...+|+.|+++++...
T Consensus 176 l~~L~~~l~~L~l~~n~l~~~~~---------~~~-~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~ 245 (606)
T 3vq2_A 176 LRENPQVNLSLDMSLNPIDFIQD---------QAF-QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER 245 (606)
T ss_dssp HHHCTTCCCEEECTTCCCCEECT---------TTT-TTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSC
T ss_pred hhccccccceeeccCCCcceeCc---------ccc-cCceeeeeeccCCccchhHHHHHhccccccccccccccccccCC
Confidence 555542100222221 111100 001 1112333333322100
Q ss_pred ------------------------C-cchhHhhhcCCCCCCCCCeEEEeeccCCCCCCCChhhhccccccEEeEeccCCC
Q 001993 774 ------------------------K-TKDHRVVLECLQPPSSLEKLGIYGYAGDTISPTSDWMLSLAKLRVLTLRFCNEC 828 (985)
Q Consensus 774 ------------------------~-~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~ 828 (985)
. .......+ .+..+++|+.|++.++....+ | ++..+++|+.|++++|..
T Consensus 246 ~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~l---~-~l~~~~~L~~L~l~~n~l- 319 (606)
T 3vq2_A 246 NLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIV-KFHCLANVSAMSLAGVSIKYL---E-DVPKHFKWQSLSIIRCQL- 319 (606)
T ss_dssp CCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGG-SCGGGTTCSEEEEESCCCCCC---C-CCCTTCCCSEEEEESCCC-
T ss_pred cccccChHHhhhhhhccHhheecccccccccccc-ccccCCCCCEEEecCccchhh---h-hccccccCCEEEcccccC-
Confidence 0 00000111 134445666666666555444 4 455555666666666543
Q ss_pred CcCCCCCCCCccceeeccCCCCceEe------------------------CCcccCCchhhhhhhhhhhcccccccCCCC
Q 001993 829 ECLPPLGKLPCLETLVLEGMSSVKRL------------------------GNGFLGIAEDHQARADQAETASSIIRDTAF 884 (985)
Q Consensus 829 ~~l~~l~~l~~L~~L~L~~~~~l~~l------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 884 (985)
+.+|.+ .+++|+.|++++|..+..+ +..+.....+..+.+..+...........+
T Consensus 320 ~~lp~~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l 398 (606)
T 3vq2_A 320 KQFPTL-DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGL 398 (606)
T ss_dssp SSCCCC-CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTC
T ss_pred cccccC-CCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCC
Confidence 455544 5555555555554333322 111111222222222222222211223345
Q ss_pred CccceeeccccccccccccccccCcccccccccceeecccccCCCCCCCCCCCCCcCeEEecCch
Q 001993 885 PRLETLEFLDMEKWEEWDDCEIAGGKTIMPRLRHLSICWSPELKALPDYILGSTSLDKLLIYYSR 949 (985)
Q Consensus 885 p~L~~L~l~~~~~L~~~~~~~~~~~~~~lp~L~~L~i~~c~~L~~lp~~~~~l~~L~~L~i~~c~ 949 (985)
++|+.|++.++. +..... ......+++|+.|++++|......|..+.++++|+.|++++|.
T Consensus 399 ~~L~~L~l~~n~-l~~~~~---~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 459 (606)
T 3vq2_A 399 EELQHLDFQHST-LKRVTE---FSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNS 459 (606)
T ss_dssp TTCCEEECTTSE-EESTTT---TTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCE
T ss_pred CCCCeeECCCCc-cCCccC---hhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCc
Confidence 666666666542 222211 0134567888888888886555567778888889999988885
No 12
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.87 E-value=7.1e-22 Score=219.98 Aligned_cols=281 Identities=18% Similarity=0.173 Sum_probs=163.5
Q ss_pred hccCCcceeecCC--CCCCCCcccccCCCCCeEecCCCCCccccchhhcCCCCCcEeeccCcccccccchhhhhccccce
Q 001993 600 FDRLTCLRSIDGL--PVGQIPKGIKKLIHLRYLALGENPWIKELPEALCELCNLQTLDVSLCHYLKRLPERIGQLINLRH 677 (985)
Q Consensus 600 ~~~l~~Lr~L~l~--~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~ 677 (985)
+..+++|++|+++ .+..+|. +..+++|++|++++|. +..+| .+..+++|++|++++|. +..+|. +..+++|++
T Consensus 62 ~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~-i~~~~-~~~~l~~L~~L~l~~n~-i~~~~~-~~~l~~L~~ 136 (347)
T 4fmz_A 62 IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNK-ITDIS-ALQNLTNLRELYLNEDN-ISDISP-LANLTKMYS 136 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCG-GGTTCTTCSEEECTTSC-CCCCGG-GTTCTTCCE
T ss_pred hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCc-ccCch-HHcCCCcCCEEECcCCc-ccCchh-hccCCceeE
Confidence 4445555555554 3334443 5555555555555554 44444 25555555555555554 444443 555555555
Q ss_pred eecccccccccccCCCcCCCCCCCCccCceEecCCCcccccCCchhhhccccCcceeeecccccccCCCCcchhhhcccc
Q 001993 678 LMNSKEEWSRLSYMPRGMERLTGLRTLGAFVASGGKSSKACSSLKSLNKLKHLEGSLTLRGLGNERDLGDDNDDEKVDLK 757 (985)
Q Consensus 678 L~l~~n~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~~~~l~ 757 (985)
|++++| ..... +..+..+++|++|++..+.... +..+..+++|+ .|.+.+.. +.. . ..+.
T Consensus 137 L~l~~n--~~~~~-~~~~~~l~~L~~L~l~~~~~~~-------~~~~~~l~~L~-~L~l~~n~-l~~---~-----~~~~ 196 (347)
T 4fmz_A 137 LNLGAN--HNLSD-LSPLSNMTGLNYLTVTESKVKD-------VTPIANLTDLY-SLSLNYNQ-IED---I-----SPLA 196 (347)
T ss_dssp EECTTC--TTCCC-CGGGTTCTTCCEEECCSSCCCC-------CGGGGGCTTCS-EEECTTSC-CCC---C-----GGGG
T ss_pred EECCCC--CCccc-ccchhhCCCCcEEEecCCCcCC-------chhhccCCCCC-EEEccCCc-ccc---c-----cccc
Confidence 555522 11122 2224555555555544332221 11122222222 33332211 001 0 1144
Q ss_pred cccccccEEEEEcCCCCcchhHhhhcCCCCCCCCCeEEEeeccCCCCCCCChhhhccccccEEeEeccCCCCcCCCCCCC
Q 001993 758 SKMKLVDLHLRFDSTTKTKDHRVVLECLQPPSSLEKLGIYGYAGDTISPTSDWMLSLAKLRVLTLRFCNECECLPPLGKL 837 (985)
Q Consensus 758 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l 837 (985)
.+++|+.|.++.+.... ...+..+++|+.|++++|....+ |. +..+++|+.|++++| .++.++.+..+
T Consensus 197 ~l~~L~~L~l~~n~l~~-------~~~~~~~~~L~~L~l~~n~l~~~---~~-~~~l~~L~~L~l~~n-~l~~~~~~~~l 264 (347)
T 4fmz_A 197 SLTSLHYFTAYVNQITD-------ITPVANMTRLNSLKIGNNKITDL---SP-LANLSQLTWLEIGTN-QISDINAVKDL 264 (347)
T ss_dssp GCTTCCEEECCSSCCCC-------CGGGGGCTTCCEEECCSSCCCCC---GG-GTTCTTCCEEECCSS-CCCCCGGGTTC
T ss_pred CCCccceeecccCCCCC-------CchhhcCCcCCEEEccCCccCCC---cc-hhcCCCCCEEECCCC-ccCCChhHhcC
Confidence 55666777666554111 01145678899999999987776 54 778999999999998 45667778899
Q ss_pred CccceeeccCCCCceEeCCcccCCchhhhhhhhhhhcccccccCCCCCccceeeccccccccccccccccCccccccccc
Q 001993 838 PCLETLVLEGMSSVKRLGNGFLGIAEDHQARADQAETASSIIRDTAFPRLETLEFLDMEKWEEWDDCEIAGGKTIMPRLR 917 (985)
Q Consensus 838 ~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~lp~L~ 917 (985)
++|+.|++++|. +..++. ...+++|+.|+++++. +...... ....+++|+
T Consensus 265 ~~L~~L~l~~n~-l~~~~~------------------------~~~l~~L~~L~L~~n~-l~~~~~~----~l~~l~~L~ 314 (347)
T 4fmz_A 265 TKLKMLNVGSNQ-ISDISV------------------------LNNLSQLNSLFLNNNQ-LGNEDME----VIGGLTNLT 314 (347)
T ss_dssp TTCCEEECCSSC-CCCCGG------------------------GGGCTTCSEEECCSSC-CCGGGHH----HHHTCTTCS
T ss_pred CCcCEEEccCCc-cCCChh------------------------hcCCCCCCEEECcCCc-CCCcChh----HhhccccCC
Confidence 999999999874 444421 1358899999999874 3333221 234689999
Q ss_pred ceeecccccCCCCCCCCCCCCCcCeEEecCch
Q 001993 918 HLSICWSPELKALPDYILGSTSLDKLLIYYSR 949 (985)
Q Consensus 918 ~L~i~~c~~L~~lp~~~~~l~~L~~L~i~~c~ 949 (985)
.|++++|+ ++.++. +..+++|+.|++++|+
T Consensus 315 ~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 315 TLFLSQNH-ITDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp EEECCSSS-CCCCGG-GGGCTTCSEESSSCC-
T ss_pred EEEccCCc-cccccC-hhhhhccceeehhhhc
Confidence 99999995 666654 7789999999999997
No 13
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.86 E-value=1.3e-21 Score=226.80 Aligned_cols=338 Identities=18% Similarity=0.178 Sum_probs=205.0
Q ss_pred CeEEEEEEcCCCCCccCCCccccCCCCceEEEccCcCCcchhhhHHHhhccCCcceeecCC--CCCCCCcccccCCCCCe
Q 001993 552 KARHLMITGETRSEMVPFPSMVYDETKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL--PVGQIPKGIKKLIHLRY 629 (985)
Q Consensus 552 ~~r~l~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~--~~~~lp~~i~~l~~Lr~ 629 (985)
.++.+.+.++.... .+ .+..+++|++|+++++... .. +. +.++++|++|+++ .+..++. ++++++|++
T Consensus 47 ~l~~L~l~~~~i~~---l~-~~~~l~~L~~L~Ls~n~l~---~~-~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~ 116 (466)
T 1o6v_A 47 QVTTLQADRLGIKS---ID-GVEYLNNLTQINFSNNQLT---DI-TP-LKNLTKLVDILMNNNQIADITP-LANLTNLTG 116 (466)
T ss_dssp TCCEEECCSSCCCC---CT-TGGGCTTCCEEECCSSCCC---CC-GG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCE
T ss_pred cccEEecCCCCCcc---Cc-chhhhcCCCEEECCCCccC---Cc-hh-hhccccCCEEECCCCccccChh-hcCCCCCCE
Confidence 56777777666532 22 3667888888888887642 22 22 7888888888888 5666665 888888999
Q ss_pred EecCCCCCccccchhhcCCCCCcEeeccCcccccccchhhhhccccceeecccccccccccCCCcCCCCCCCCccCceEe
Q 001993 630 LALGENPWIKELPEALCELCNLQTLDVSLCHYLKRLPERIGQLINLRHLMNSKEEWSRLSYMPRGMERLTGLRTLGAFVA 709 (985)
Q Consensus 630 L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~n~~~~l~~~p~~i~~L~~L~~L~~~~~ 709 (985)
|++++|. +..+|. +..+++|++|++++|. +..+|. +..+++|++|++++ . +..++ .++++++|+.|++..+
T Consensus 117 L~L~~n~-l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~-~---~~~~~-~~~~l~~L~~L~l~~n 187 (466)
T 1o6v_A 117 LTLFNNQ-ITDIDP-LKNLTNLNRLELSSNT-ISDISA-LSGLTSLQQLSFGN-Q---VTDLK-PLANLTTLERLDISSN 187 (466)
T ss_dssp EECCSSC-CCCCGG-GTTCTTCSEEEEEEEE-ECCCGG-GTTCTTCSEEEEEE-S---CCCCG-GGTTCTTCCEEECCSS
T ss_pred EECCCCC-CCCChH-HcCCCCCCEEECCCCc-cCCChh-hccCCcccEeecCC-c---ccCch-hhccCCCCCEEECcCC
Confidence 9988887 888776 8888888999888887 666764 78888888888762 1 22333 3777788888877655
Q ss_pred cCCCcccccCCchhhhccccCcceeeecccccccCCCCcchhhhcccccccccccEEEEEcCCCCcchhHhhhcCCCCCC
Q 001993 710 SGGKSSKACSSLKSLNKLKHLEGSLTLRGLGNERDLGDDNDDEKVDLKSKMKLVDLHLRFDSTTKTKDHRVVLECLQPPS 789 (985)
Q Consensus 710 ~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~ 789 (985)
.... +..+..+++|+ .|.+.+.. +.. . ..+..+++|+.|+++.+.... ...+..++
T Consensus 188 ~l~~-------~~~l~~l~~L~-~L~l~~n~-l~~---~-----~~~~~l~~L~~L~l~~n~l~~-------~~~l~~l~ 243 (466)
T 1o6v_A 188 KVSD-------ISVLAKLTNLE-SLIATNNQ-ISD---I-----TPLGILTNLDELSLNGNQLKD-------IGTLASLT 243 (466)
T ss_dssp CCCC-------CGGGGGCTTCS-EEECCSSC-CCC---C-----GGGGGCTTCCEEECCSSCCCC-------CGGGGGCT
T ss_pred cCCC-------ChhhccCCCCC-EEEecCCc-ccc---c-----ccccccCCCCEEECCCCCccc-------chhhhcCC
Confidence 4332 22233333333 44443321 111 0 114445667777766554111 12334456
Q ss_pred CCCeEEEeeccCCCCCCCChhhhccccccEEeEeccCCCCcCCCCCCCCccceeeccCCCCceEeCCcccCCchhhhhhh
Q 001993 790 SLEKLGIYGYAGDTISPTSDWMLSLAKLRVLTLRFCNECECLPPLGKLPCLETLVLEGMSSVKRLGNGFLGIAEDHQARA 869 (985)
Q Consensus 790 ~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~ 869 (985)
+|+.|++++|..... +. +..+++|+.|++++|. +..+++++.+++|+.|++++|. +..++. +.....+..+.+
T Consensus 244 ~L~~L~l~~n~l~~~---~~-~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~L 316 (466)
T 1o6v_A 244 NLTDLDLANNQISNL---AP-LSGLTKLTELKLGANQ-ISNISPLAGLTALTNLELNENQ-LEDISP-ISNLKNLTYLTL 316 (466)
T ss_dssp TCSEEECCSSCCCCC---GG-GTTCTTCSEEECCSSC-CCCCGGGTTCTTCSEEECCSSC-CSCCGG-GGGCTTCSEEEC
T ss_pred CCCEEECCCCccccc---hh-hhcCCCCCEEECCCCc-cCccccccCCCccCeEEcCCCc-ccCchh-hcCCCCCCEEEC
Confidence 666666666665544 32 5566666666666663 3344446666666666666653 333221 111111222222
Q ss_pred hhhhcccccccCCCCCccceeeccccccccccccccccCcccccccccceeecccccCCCCCCCCCCCCCcCeEEecCch
Q 001993 870 DQAETASSIIRDTAFPRLETLEFLDMEKWEEWDDCEIAGGKTIMPRLRHLSICWSPELKALPDYILGSTSLDKLLIYYSR 949 (985)
Q Consensus 870 ~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~lp~L~~L~i~~c~~L~~lp~~~~~l~~L~~L~i~~c~ 949 (985)
..+...... ....+++|+.|+++++ .+.... ....+++|+.|++++|. +..++. +..+++|+.|++++|+
T Consensus 317 ~~n~l~~~~-~~~~l~~L~~L~l~~n-~l~~~~------~l~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 317 YFNNISDIS-PVSSLTKLQRLFFYNN-KVSDVS------SLANLTNINWLSAGHNQ-ISDLTP-LANLTRITQLGLNDQA 386 (466)
T ss_dssp CSSCCSCCG-GGGGCTTCCEEECCSS-CCCCCG------GGTTCTTCCEEECCSSC-CCBCGG-GTTCTTCCEEECCCEE
T ss_pred cCCcCCCch-hhccCccCCEeECCCC-ccCCch------hhccCCCCCEEeCCCCc-cCccch-hhcCCCCCEEeccCCc
Confidence 222222111 1346788888888876 444442 24478899999998884 444443 6788999999999886
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.86 E-value=9.5e-22 Score=234.91 Aligned_cols=128 Identities=20% Similarity=0.262 Sum_probs=79.7
Q ss_pred CCCeEEEEEEcCCCCCccCCCccccCCCCceEEEccCcCCcchhhhHHHhhccCCcceeecCC--CCCCCC-cccccCCC
Q 001993 550 SWKARHLMITGETRSEMVPFPSMVYDETKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL--PVGQIP-KGIKKLIH 626 (985)
Q Consensus 550 ~~~~r~l~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~--~~~~lp-~~i~~l~~ 626 (985)
+..++++.+.++.+.... +..+..+++|++|+++++.. ....+..|.++++|++|+++ .+..+| ..++.+.+
T Consensus 27 ~~~l~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~Ls~n~i---~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 101 (570)
T 2z63_A 27 PFSTKNLDLSFNPLRHLG--SYSFFSFPELQVLDLSRCEI---QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101 (570)
T ss_dssp CSSCCEEECCSCCCCEEC--TTTTTTCSSCCEEECTTCCC---CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTT
T ss_pred cccccEEEccCCccCccC--hhHhhCCCCceEEECCCCcC---CccCcccccCchhCCEEeCcCCcCCccCHhhhcCccc
Confidence 345677777766653222 34566677777777777643 22234456677777777776 344443 45667777
Q ss_pred CCeEecCCCCCccccch-hhcCCCCCcEeeccCccccc--ccchhhhhccccceeeccccc
Q 001993 627 LRYLALGENPWIKELPE-ALCELCNLQTLDVSLCHYLK--RLPERIGQLINLRHLMNSKEE 684 (985)
Q Consensus 627 Lr~L~L~~~~~i~~lP~-~i~~L~~L~~L~l~~~~~l~--~lP~~i~~L~~L~~L~l~~n~ 684 (985)
|++|++++|. +..+|. .++++++|++|++++|. +. .+|..++++++|++|++++|.
T Consensus 102 L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~l~~n~ 160 (570)
T 2z63_A 102 LQKLVAVETN-LASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNK 160 (570)
T ss_dssp CCEEECTTSC-CCCSTTCSCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECTTSC
T ss_pred cccccccccc-cccCCCccccccccccEEecCCCc-cceecChhhhcccCCCCEEeCcCCc
Confidence 7777777776 666654 46667777777777666 43 256666777777777766543
No 15
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.86 E-value=2.8e-21 Score=227.85 Aligned_cols=152 Identities=18% Similarity=0.147 Sum_probs=100.1
Q ss_pred CCCCCCCeEEEeeccCCCCCCCChhhhccccccEEeEeccCCCC--cCC-CCCCCCccceeeccCCCCceE-eCCc-ccC
Q 001993 786 QPPSSLEKLGIYGYAGDTISPTSDWMLSLAKLRVLTLRFCNECE--CLP-PLGKLPCLETLVLEGMSSVKR-LGNG-FLG 860 (985)
Q Consensus 786 ~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~--~l~-~l~~l~~L~~L~L~~~~~l~~-l~~~-~~~ 860 (985)
..+++|+.|++++|...... |.++..+++|+.|+|++|.... .+| .++.+++|++|+|++|. +.. ++.. +..
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~-l~~~l~~~~~~~ 397 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTV--FENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS-VSYDEKKGDCSW 397 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTT--TTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSC-CBCCGGGCSCCC
T ss_pred hhCCcccEEEeECCccChhh--hhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCc-CCcccccchhcc
Confidence 45677888888877765532 6677778888888888874332 222 26778888888888765 443 5543 222
Q ss_pred CchhhhhhhhhhhcccccccCCCC-CccceeeccccccccccccccccCcccccccccceeecccccCCCCCCC-CCCCC
Q 001993 861 IAEDHQARADQAETASSIIRDTAF-PRLETLEFLDMEKWEEWDDCEIAGGKTIMPRLRHLSICWSPELKALPDY-ILGST 938 (985)
Q Consensus 861 ~~~~~~~~~~~~~~~~~~~~~~~f-p~L~~L~l~~~~~L~~~~~~~~~~~~~~lp~L~~L~i~~c~~L~~lp~~-~~~l~ 938 (985)
...+..+.++.+......+ ..+ ++|+.|+++++ .++.++. ....+++|+.|++++| .++.+|.. +.+++
T Consensus 398 l~~L~~L~Ls~N~l~~~~~--~~l~~~L~~L~Ls~N-~l~~ip~-----~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~ 468 (520)
T 2z7x_B 398 TKSLLSLNMSSNILTDTIF--RCLPPRIKVLDLHSN-KIKSIPK-----QVVKLEALQELNVASN-QLKSVPDGIFDRLT 468 (520)
T ss_dssp CTTCCEEECCSSCCCGGGG--GSCCTTCCEEECCSS-CCCCCCG-----GGGGCTTCCEEECCSS-CCCCCCTTTTTTCT
T ss_pred CccCCEEECcCCCCCcchh--hhhcccCCEEECCCC-cccccch-----hhhcCCCCCEEECCCC-cCCccCHHHhccCC
Confidence 2333334444443332221 123 68888888875 4555544 3447899999999998 67888876 78899
Q ss_pred CcCeEEecCch
Q 001993 939 SLDKLLIYYSR 949 (985)
Q Consensus 939 ~L~~L~i~~c~ 949 (985)
+|+.|++++++
T Consensus 469 ~L~~L~l~~N~ 479 (520)
T 2z7x_B 469 SLQKIWLHTNP 479 (520)
T ss_dssp TCCEEECCSSC
T ss_pred cccEEECcCCC
Confidence 99999999876
No 16
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.86 E-value=1.8e-21 Score=234.18 Aligned_cols=378 Identities=15% Similarity=0.030 Sum_probs=207.8
Q ss_pred CCCCeEEEEEEcCCCCCccCCCccccCCCCceEEEccCcCCcchhhhHHHhhccCCcceeecCC--CCCCC-CcccccCC
Q 001993 549 PSWKARHLMITGETRSEMVPFPSMVYDETKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL--PVGQI-PKGIKKLI 625 (985)
Q Consensus 549 ~~~~~r~l~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~--~~~~l-p~~i~~l~ 625 (985)
.+..++++.+.++.+... .+..+.++++|++|+++++.. ....+..|.++++|++|+++ .+..+ |..++.++
T Consensus 31 l~~~l~~L~Ls~n~i~~~--~~~~~~~l~~L~~L~Ls~n~i---~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 105 (606)
T 3t6q_A 31 LPNSTECLEFSFNVLPTI--QNTTFSRLINLTFLDLTRCQI---YWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPK 105 (606)
T ss_dssp SCTTCCEEECTTCCCSEE--CTTTSTTCTTCSEEECTTCCC---CEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCT
T ss_pred CCCcCcEEEccCCccCcC--ChhHhccCccceEEECCCCcc---ceeChhhccCccccCeeeCCCCcccccChhhhcccc
Confidence 345788899988887533 256788899999999998864 33446668899999999998 45444 67888999
Q ss_pred CCCeEecCCCCCcccc-chhhcCCCCCcEeeccCcccccccc-hhhhhccccceeecccccccccccC-CCcCCCCCCCC
Q 001993 626 HLRYLALGENPWIKEL-PEALCELCNLQTLDVSLCHYLKRLP-ERIGQLINLRHLMNSKEEWSRLSYM-PRGMERLTGLR 702 (985)
Q Consensus 626 ~Lr~L~L~~~~~i~~l-P~~i~~L~~L~~L~l~~~~~l~~lP-~~i~~L~~L~~L~l~~n~~~~l~~~-p~~i~~L~~L~ 702 (985)
+|++|++++|. +..+ |..++.+++|++|++++|. +..++ +.+..+++|++|++++|.. ..+ |..++.+++|+
T Consensus 106 ~L~~L~L~~n~-i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l---~~~~~~~~~~l~~L~ 180 (606)
T 3t6q_A 106 ALKHLFFIQTG-ISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAI---HYLSKEDMSSLQQAT 180 (606)
T ss_dssp TCCEEECTTSC-CSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEECCSSCC---CEECHHHHHTTTTCC
T ss_pred cccEeeccccC-cccCCcchhccCCcccEEECCCCc-ccccCcccccCCcccCEEEcccCcc---cccChhhhhhhcccc
Confidence 99999999998 7776 5678889999999999988 65542 3344588999999986544 333 34567777777
Q ss_pred --ccCceEecCCCcccccCCchh---------------hhccccCcc-eeeecccccccCC-------------------
Q 001993 703 --TLGAFVASGGKSSKACSSLKS---------------LNKLKHLEG-SLTLRGLGNERDL------------------- 745 (985)
Q Consensus 703 --~L~~~~~~~~~~~~~~~~l~~---------------L~~L~~L~~-~L~i~~l~~~~~~------------------- 745 (985)
.|++..+.............. +..+..+.. .+.+..+......
T Consensus 181 ~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~ 260 (606)
T 3t6q_A 181 NLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESIN 260 (606)
T ss_dssp SEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEE
T ss_pred eeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEE
Confidence 444433322211100000000 000000000 0000000000000
Q ss_pred -C--CcchhhhcccccccccccEEEEEcCCCCcchhHhhhcCCCCCCCCCeEEEeeccCCCCCCCChhhhccccccEEeE
Q 001993 746 -G--DDNDDEKVDLKSKMKLVDLHLRFDSTTKTKDHRVVLECLQPPSSLEKLGIYGYAGDTISPTSDWMLSLAKLRVLTL 822 (985)
Q Consensus 746 -~--~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L 822 (985)
. .........+..+++|+.|+++++. ...++..+..+++|+.|++++|...... |..+..+++|+.|++
T Consensus 261 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~------l~~lp~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l 332 (606)
T 3t6q_A 261 LQKHYFFNISSNTFHCFSGLQELDLTATH------LSELPSGLVGLSTLKKLVLSANKFENLC--QISASNFPSLTHLSI 332 (606)
T ss_dssp CTTCCCSSCCTTTTTTCTTCSEEECTTSC------CSCCCSSCCSCTTCCEEECTTCCCSBGG--GGCGGGCTTCSEEEC
T ss_pred eecCccCccCHHHhccccCCCEEeccCCc------cCCCChhhcccccCCEEECccCCcCcCc--hhhhhccCcCCEEEC
Confidence 0 0001111224556677777776554 1134445566677777777777655542 445666777777777
Q ss_pred eccCCCCcCCC--CCCCCccceeeccCCCCceEe---CCcccCCchhhhhhhhhhhcccccc-cCCCCCccceeeccccc
Q 001993 823 RFCNECECLPP--LGKLPCLETLVLEGMSSVKRL---GNGFLGIAEDHQARADQAETASSII-RDTAFPRLETLEFLDME 896 (985)
Q Consensus 823 ~~~~~~~~l~~--l~~l~~L~~L~L~~~~~l~~l---~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~fp~L~~L~l~~~~ 896 (985)
++|.....+|. ++.+++|++|++++|. +..+ +..+.....+..+.+..+....... ....+++|++|+++++.
T Consensus 333 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 411 (606)
T 3t6q_A 333 KGNTKRLELGTGCLENLENLRELDLSHDD-IETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR 411 (606)
T ss_dssp CSCSSCCBCCSSTTTTCTTCCEEECCSSC-CCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCC
T ss_pred CCCCcccccchhhhhccCcCCEEECCCCc-cccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCc
Confidence 77754444442 6667777777777654 3333 2233333333333333333222211 12345666666665532
Q ss_pred cccccccccccCcccccccccceeecccccCCCCCCCCCCCCCcCeEEecCch
Q 001993 897 KWEEWDDCEIAGGKTIMPRLRHLSICWSPELKALPDYILGSTSLDKLLIYYSR 949 (985)
Q Consensus 897 ~L~~~~~~~~~~~~~~lp~L~~L~i~~c~~L~~lp~~~~~l~~L~~L~i~~c~ 949 (985)
+..... ......+++|+.|++++|..-...|..+..+++|+.|++++|+
T Consensus 412 -l~~~~~---~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 460 (606)
T 3t6q_A 412 -LKVKDA---QSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNH 460 (606)
T ss_dssp -EECCTT---CCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCB
T ss_pred -CCCccc---chhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCC
Confidence 111111 0012345556666665553322234444555555555555553
No 17
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.86 E-value=1.2e-21 Score=232.74 Aligned_cols=368 Identities=17% Similarity=0.155 Sum_probs=232.3
Q ss_pred CCeEEEEEEcCCCCCccCCCccccCCCCceEEEccCcCCcchhhhHHHhhccCCcceeecCC--CCCCCCcc-cccCCCC
Q 001993 551 WKARHLMITGETRSEMVPFPSMVYDETKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL--PVGQIPKG-IKKLIHL 627 (985)
Q Consensus 551 ~~~r~l~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~--~~~~lp~~-i~~l~~L 627 (985)
..++++.+.++.+... .+..+..+++|++|+++++.. ....+..|.++++|++|+++ .+..+|.. ++.+++|
T Consensus 26 ~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~Ls~n~i---~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 100 (549)
T 2z81_A 26 AAMKSLDLSFNKITYI--GHGDLRACANLQVLILKSSRI---NTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSL 100 (549)
T ss_dssp TTCCEEECCSSCCCEE--CSSTTSSCTTCCEEECTTSCC---CEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTC
T ss_pred CCccEEECcCCccCcc--ChhhhhcCCcccEEECCCCCc---CccChhhccccccCCEEECCCCccCccCHHHhccCCCC
Confidence 5788899988877432 255678899999999998864 33345668899999999998 56667655 8999999
Q ss_pred CeEecCCCCCccc--cchhhcCCCCCcEeeccCcccccccc-hhhhhccccceeecccccccccccCCCcCCCCCCCCcc
Q 001993 628 RYLALGENPWIKE--LPEALCELCNLQTLDVSLCHYLKRLP-ERIGQLINLRHLMNSKEEWSRLSYMPRGMERLTGLRTL 704 (985)
Q Consensus 628 r~L~L~~~~~i~~--lP~~i~~L~~L~~L~l~~~~~l~~lP-~~i~~L~~L~~L~l~~n~~~~l~~~p~~i~~L~~L~~L 704 (985)
++|++++|. +.. .|..++++++|++|++++|..+..+| ..+..+++|++|++++|... ...|..++++++|++|
T Consensus 101 ~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~l~~l~~L~~L 177 (549)
T 2z81_A 101 KYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR--NYQSQSLKSIRDIHHL 177 (549)
T ss_dssp CEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC--EECTTTTTTCSEEEEE
T ss_pred cEEECCCCc-ccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccc--ccChhhhhccccCceE
Confidence 999999998 764 46778899999999999987667776 47888999999999865543 3356667766666665
Q ss_pred CceEecCCCcccccCCchhhhccc----------------------------------------------------cCcc
Q 001993 705 GAFVASGGKSSKACSSLKSLNKLK----------------------------------------------------HLEG 732 (985)
Q Consensus 705 ~~~~~~~~~~~~~~~~l~~L~~L~----------------------------------------------------~L~~ 732 (985)
++..+.....+.. .+..+++|+ .|.
T Consensus 178 ~l~~n~~~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~- 254 (549)
T 2z81_A 178 TLHLSESAFLLEI--FADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELS- 254 (549)
T ss_dssp EEECSBSTTHHHH--HHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCC-
T ss_pred ecccCcccccchh--hHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccc-
Confidence 5443322110000 000011111 111
Q ss_pred eeeeccc--ccccCCCC--------cch------------------------------------------hhhccccccc
Q 001993 733 SLTLRGL--GNERDLGD--------DND------------------------------------------DEKVDLKSKM 760 (985)
Q Consensus 733 ~L~i~~l--~~~~~~~~--------~~~------------------------------------------~~~~~l~~~~ 760 (985)
.+.+... ..+.++.. ... .....+..++
T Consensus 255 ~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~ 334 (549)
T 2z81_A 255 EVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLK 334 (549)
T ss_dssp EEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCT
T ss_pred ccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCc
Confidence 1111100 00000000 000 0000012345
Q ss_pred ccccEEEEEcCCCCcchhHhh---hcCCCCCCCCCeEEEeeccCCCCCCCChhhhccccccEEeEeccCCCCcCC-CCCC
Q 001993 761 KLVDLHLRFDSTTKTKDHRVV---LECLQPPSSLEKLGIYGYAGDTISPTSDWMLSLAKLRVLTLRFCNECECLP-PLGK 836 (985)
Q Consensus 761 ~L~~L~l~~~~~~~~~~~~~~---~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~-~l~~ 836 (985)
+|+.|+++.+. ....+ ...+..+++|+.|++++|....+...+..+..+++|+.|+|++|. ++.+| .++.
T Consensus 335 ~L~~L~Ls~N~-----l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~ 408 (549)
T 2z81_A 335 SLEFLDLSENL-----MVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT-FHPMPDSCQW 408 (549)
T ss_dssp TCCEEECCSSC-----CCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCC-CCCCCSCCCC
T ss_pred cccEEEccCCc-----cccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCC-CccCChhhcc
Confidence 55555555443 11111 233566778888888888776651001346788899999999884 45666 4778
Q ss_pred CCccceeeccCCCCceEeCCcccCCchhhhhhhhhhhcccccccCCCCCccceeeccccccccccccccccCcccccccc
Q 001993 837 LPCLETLVLEGMSSVKRLGNGFLGIAEDHQARADQAETASSIIRDTAFPRLETLEFLDMEKWEEWDDCEIAGGKTIMPRL 916 (985)
Q Consensus 837 l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~lp~L 916 (985)
+++|++|++++|. +..++.... ..+..+.++.+..... ...+++|++|+++++ +++.++. ...+++|
T Consensus 409 ~~~L~~L~Ls~N~-l~~l~~~~~--~~L~~L~Ls~N~l~~~---~~~l~~L~~L~Ls~N-~l~~ip~------~~~l~~L 475 (549)
T 2z81_A 409 PEKMRFLNLSSTG-IRVVKTCIP--QTLEVLDVSNNNLDSF---SLFLPRLQELYISRN-KLKTLPD------ASLFPVL 475 (549)
T ss_dssp CTTCCEEECTTSC-CSCCCTTSC--TTCSEEECCSSCCSCC---CCCCTTCCEEECCSS-CCSSCCC------GGGCTTC
T ss_pred cccccEEECCCCC-cccccchhc--CCceEEECCCCChhhh---cccCChhcEEECCCC-ccCcCCC------cccCccC
Confidence 8899999998865 555554332 2233344444443332 246899999999985 5665543 2368999
Q ss_pred cceeecccccCCCCC-CCCCCCCCcCeEEecCch
Q 001993 917 RHLSICWSPELKALP-DYILGSTSLDKLLIYYSR 949 (985)
Q Consensus 917 ~~L~i~~c~~L~~lp-~~~~~l~~L~~L~i~~c~ 949 (985)
+.|++++| .++.+| ..+.++++|+.|++++|+
T Consensus 476 ~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 476 LVMKISRN-QLKSVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp CEEECCSS-CCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred CEEecCCC-ccCCcCHHHHhcCcccCEEEecCCC
Confidence 99999998 566665 457889999999998776
No 18
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.86 E-value=1.6e-21 Score=240.25 Aligned_cols=367 Identities=20% Similarity=0.118 Sum_probs=197.9
Q ss_pred CCeEEEEEEcCCCCCccCCCccccCCCCceEEEccCcCCcchhhhHHHhhccCCcceeecCCC--CC-CCCcccccCCCC
Q 001993 551 WKARHLMITGETRSEMVPFPSMVYDETKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGLP--VG-QIPKGIKKLIHL 627 (985)
Q Consensus 551 ~~~r~l~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~--~~-~lp~~i~~l~~L 627 (985)
...+++.+.++.... ..+.+..+++|++|.++++.. ....+..|.++++|++|+++. +. .+|.. .+++|
T Consensus 200 ~~L~~L~Ls~n~l~~---~~~~l~~l~~L~~L~Ls~n~l---~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L 271 (768)
T 3rgz_A 200 VNLEFLDVSSNNFST---GIPFLGDCSALQHLDISGNKL---SGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSL 271 (768)
T ss_dssp TTCCEEECCSSCCCS---CCCBCTTCCSCCEEECCSSCC---CSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTC
T ss_pred CcCCEEECcCCcCCC---CCcccccCCCCCEEECcCCcC---CCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCC
Confidence 466777777776632 122367778888888877753 333556677777777777762 22 12221 44445
Q ss_pred CeEecCCCCCccccchhhcCC-CCCcEeeccCcccccccchhhhhccccceeecccccccccccCCCc-CCCCCCCCccC
Q 001993 628 RYLALGENPWIKELPEALCEL-CNLQTLDVSLCHYLKRLPERIGQLINLRHLMNSKEEWSRLSYMPRG-MERLTGLRTLG 705 (985)
Q Consensus 628 r~L~L~~~~~i~~lP~~i~~L-~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~n~~~~l~~~p~~-i~~L~~L~~L~ 705 (985)
++|++++|.....+|..+..+ ++|++|++++|.....+|..++.+++|++|++++|... ..+|.. ++++++|++|+
T Consensus 272 ~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~--~~ip~~~l~~l~~L~~L~ 349 (768)
T 3rgz_A 272 QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFS--GELPMDTLLKMRGLKVLD 349 (768)
T ss_dssp CEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEE--EECCHHHHTTCTTCCEEE
T ss_pred CEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCccc--CcCCHHHHhcCCCCCEEe
Confidence 555555554112444444432 44555555544422344444444444444444432211 133333 44444444444
Q ss_pred ceEecCCCcccccCCchhhh-cc-----------------------------------------------ccCcceeeec
Q 001993 706 AFVASGGKSSKACSSLKSLN-KL-----------------------------------------------KHLEGSLTLR 737 (985)
Q Consensus 706 ~~~~~~~~~~~~~~~l~~L~-~L-----------------------------------------------~~L~~~L~i~ 737 (985)
+..+..... ....+..+. +| ++|+ .|.+.
T Consensus 350 Ls~n~l~~~--~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~-~L~Ls 426 (768)
T 3rgz_A 350 LSFNEFSGE--LPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELV-SLHLS 426 (768)
T ss_dssp CCSSEEEEC--CCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCC-EEECC
T ss_pred CcCCccCcc--ccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCC-EEECc
Confidence 432221100 000111111 11 1111 11111
Q ss_pred ccccccCCCCcchhhhcccccccccccEEEEEcCCCCcchhHhhhcCCCCCCCCCeEEEeeccCCCCCCCChhhhccccc
Q 001993 738 GLGNERDLGDDNDDEKVDLKSKMKLVDLHLRFDSTTKTKDHRVVLECLQPPSSLEKLGIYGYAGDTISPTSDWMLSLAKL 817 (985)
Q Consensus 738 ~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L 817 (985)
... ........+..+++|+.|+++.+. ....++..+..+++|+.|++++|...... |.++..+++|
T Consensus 427 ~N~-------l~~~~p~~l~~l~~L~~L~L~~n~-----l~~~~p~~~~~l~~L~~L~L~~N~l~~~~--p~~l~~l~~L 492 (768)
T 3rgz_A 427 FNY-------LSGTIPSSLGSLSKLRDLKLWLNM-----LEGEIPQELMYVKTLETLILDFNDLTGEI--PSGLSNCTNL 492 (768)
T ss_dssp SSE-------EESCCCGGGGGCTTCCEEECCSSC-----CCSCCCGGGGGCTTCCEEECCSSCCCSCC--CGGGGGCTTC
T ss_pred CCc-------ccCcccHHHhcCCCCCEEECCCCc-----ccCcCCHHHcCCCCceEEEecCCcccCcC--CHHHhcCCCC
Confidence 100 000111223444555555555443 11123344556678888888888766432 7888888899
Q ss_pred cEEeEeccCCCCcCC-CCCCCCccceeeccCCCCceEeCCcccCCchhhhhhhhhhhcccccc-----------------
Q 001993 818 RVLTLRFCNECECLP-PLGKLPCLETLVLEGMSSVKRLGNGFLGIAEDHQARADQAETASSII----------------- 879 (985)
Q Consensus 818 ~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 879 (985)
+.|+|++|.....+| .++.+++|++|+|++|.....+|..+.....+..+.+..+.....++
T Consensus 493 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~ 572 (768)
T 3rgz_A 493 NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAG 572 (768)
T ss_dssp CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCS
T ss_pred CEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccc
Confidence 999998887665666 47888999999999887555677665554444444333333221111
Q ss_pred ------------------------------------------------------cCCCCCccceeecccccccccccccc
Q 001993 880 ------------------------------------------------------RDTAFPRLETLEFLDMEKWEEWDDCE 905 (985)
Q Consensus 880 ------------------------------------------------------~~~~fp~L~~L~l~~~~~L~~~~~~~ 905 (985)
....+++|+.|+++++.--..++.
T Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~-- 650 (768)
T 3rgz_A 573 KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK-- 650 (768)
T ss_dssp CEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCG--
T ss_pred ccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCH--
Confidence 112346677777776432223332
Q ss_pred ccCcccccccccceeecccccCCCCCCCCCCCCCcCeEEecCch
Q 001993 906 IAGGKTIMPRLRHLSICWSPELKALPDYILGSTSLDKLLIYYSR 949 (985)
Q Consensus 906 ~~~~~~~lp~L~~L~i~~c~~L~~lp~~~~~l~~L~~L~i~~c~ 949 (985)
..+.+++|+.|++++|.....+|..+.++++|+.|++++|.
T Consensus 651 ---~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~ 691 (768)
T 3rgz_A 651 ---EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK 691 (768)
T ss_dssp ---GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred ---HHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCc
Confidence 45678899999999886555788888889999999999885
No 19
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.85 E-value=1.3e-20 Score=224.16 Aligned_cols=363 Identities=16% Similarity=0.109 Sum_probs=207.5
Q ss_pred EEEEEEcCCCCCccCCCccccCCCCceEEEccCcCCcchhhhHHHhhccCCcceeecCC--CCCCC-CcccccCCCCCeE
Q 001993 554 RHLMITGETRSEMVPFPSMVYDETKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL--PVGQI-PKGIKKLIHLRYL 630 (985)
Q Consensus 554 r~l~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~--~~~~l-p~~i~~l~~Lr~L 630 (985)
+++.+.++.+. .+|..+. ++++.|+++++.. ....+..|.++++|++|+++ .+..+ |..++.+++|++|
T Consensus 34 ~~l~ls~~~L~---~ip~~~~--~~L~~L~Ls~N~i---~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 105 (562)
T 3a79_B 34 SMVDYSNRNLT---HVPKDLP--PRTKALSLSQNSI---SELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYL 105 (562)
T ss_dssp CEEECTTSCCC---SCCTTSC--TTCCEEECCSSCC---CCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred cEEEcCCCCCc---cCCCCCC--CCcCEEECCCCCc---cccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEE
Confidence 55666666553 2343332 6777888777753 23334557777778888777 45555 5567777788888
Q ss_pred ecCCCCCccccchhhcCCCCCcEeeccCccccccc--chhhhhccccceeecccccccccccCCCcCCCCCCC--CccCc
Q 001993 631 ALGENPWIKELPEALCELCNLQTLDVSLCHYLKRL--PERIGQLINLRHLMNSKEEWSRLSYMPRGMERLTGL--RTLGA 706 (985)
Q Consensus 631 ~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~l--P~~i~~L~~L~~L~l~~n~~~~l~~~p~~i~~L~~L--~~L~~ 706 (985)
+|++|. +..+|.. .+++|++|++++|. +..+ |..++++++|++|++++|.... ..+..+++| +.|++
T Consensus 106 ~Ls~N~-l~~lp~~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l~~-----~~~~~l~~L~L~~L~L 176 (562)
T 3a79_B 106 DVSHNR-LQNISCC--PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKFRQ-----LDLLPVAHLHLSCILL 176 (562)
T ss_dssp ECTTSC-CCEECSC--CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSBCCT-----TTTGGGTTSCEEEEEE
T ss_pred ECCCCc-CCccCcc--ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCcccc-----CchhhhhhceeeEEEe
Confidence 888777 7777775 67788888888777 5554 3677777888888877554321 233444444 66666
Q ss_pred eEecC--CCcccccCCchhhh-----------------------ccccCcceeeecccc--------------cccC---
Q 001993 707 FVASG--GKSSKACSSLKSLN-----------------------KLKHLEGSLTLRGLG--------------NERD--- 744 (985)
Q Consensus 707 ~~~~~--~~~~~~~~~l~~L~-----------------------~L~~L~~~L~i~~l~--------------~~~~--- 744 (985)
..+.. ... ....+..+. .+.+|+ .+.+..-. ....
T Consensus 177 ~~n~l~~~~~--~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~-~L~l~~n~~~~~~l~~~~~~l~~l~~L~~ 253 (562)
T 3a79_B 177 DLVSYHIKGG--ETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQ-LSNIKLNDENCQRLMTFLSELTRGPTLLN 253 (562)
T ss_dssp EESSCCCCSS--SCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEE-EEEEECCSTTHHHHHHHHHHHHSCSSCEE
T ss_pred eccccccccc--CcccccccCcceEEEEecCccchhhhhhhcccccceEE-EecccccccccchHHHHHHHHhccCcceE
Confidence 55433 110 000111110 111111 11111000 0000
Q ss_pred -------CCCcchhhhcccccccccccEEEEEcCCC--Cc------------------------chh-Hhh---------
Q 001993 745 -------LGDDNDDEKVDLKSKMKLVDLHLRFDSTT--KT------------------------KDH-RVV--------- 781 (985)
Q Consensus 745 -------~~~~~~~~~~~l~~~~~L~~L~l~~~~~~--~~------------------------~~~-~~~--------- 781 (985)
+...............+|+.|+++.+... .. ... ..+
T Consensus 254 L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L 333 (562)
T 3a79_B 254 VTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNI 333 (562)
T ss_dssp EEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCC
T ss_pred EEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcc
Confidence 00000000000000113333333332200 00 000 000
Q ss_pred ------------hcCCCCCCCCCeEEEeeccCCCCCCCChhhhccccccEEeEeccCCCCcCC----CCCCCCccceeec
Q 001993 782 ------------LECLQPPSSLEKLGIYGYAGDTISPTSDWMLSLAKLRVLTLRFCNECECLP----PLGKLPCLETLVL 845 (985)
Q Consensus 782 ------------~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~----~l~~l~~L~~L~L 845 (985)
......+++|+.|++++|...... |.++..+++|+.|+|++|. ++.++ .++.+++|+.|++
T Consensus 334 ~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~l~~L~~L~l 410 (562)
T 3a79_B 334 KMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSV--FQGCSTLKRLQTLILQRNG-LKNFFKVALMTKNMSSLETLDV 410 (562)
T ss_dssp SEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTT--TTTCCSCSSCCEEECCSSC-CCBTTHHHHTTTTCTTCCEEEC
T ss_pred eEEEccCCCcccccCccCCCCceEEECCCCccccch--hhhhcccCCCCEEECCCCC-cCCcccchhhhcCCCCCCEEEC
Confidence 000146688999999998876632 7788889999999999984 44443 3788999999999
Q ss_pred cCCCCceE-eCCc-ccCCchhhhhhhhhhhcccccccCCCC-CccceeeccccccccccccccccCcccccccccceeec
Q 001993 846 EGMSSVKR-LGNG-FLGIAEDHQARADQAETASSIIRDTAF-PRLETLEFLDMEKWEEWDDCEIAGGKTIMPRLRHLSIC 922 (985)
Q Consensus 846 ~~~~~l~~-l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~f-p~L~~L~l~~~~~L~~~~~~~~~~~~~~lp~L~~L~i~ 922 (985)
++|. +.. ++.. +.....+..+.++.+......+ ..+ ++|+.|+++++ .++.++. ....+++|+.|+++
T Consensus 411 ~~N~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~l~~~L~~L~L~~N-~l~~ip~-----~~~~l~~L~~L~L~ 481 (562)
T 3a79_B 411 SLNS-LNSHAYDRTCAWAESILVLNLSSNMLTGSVF--RCLPPKVKVLDLHNN-RIMSIPK-----DVTHLQALQELNVA 481 (562)
T ss_dssp TTSC-CBSCCSSCCCCCCTTCCEEECCSSCCCGGGG--SSCCTTCSEEECCSS-CCCCCCT-----TTTSSCCCSEEECC
T ss_pred CCCc-CCCccChhhhcCcccCCEEECCCCCCCcchh--hhhcCcCCEEECCCC-cCcccCh-----hhcCCCCCCEEECC
Confidence 9876 444 6654 2223334444444444433222 234 69999999985 5666654 34479999999999
Q ss_pred ccccCCCCCCC-CCCCCCcCeEEecCch
Q 001993 923 WSPELKALPDY-ILGSTSLDKLLIYYSR 949 (985)
Q Consensus 923 ~c~~L~~lp~~-~~~l~~L~~L~i~~c~ 949 (985)
+| .++.+|.. +..+++|+.|+++++|
T Consensus 482 ~N-~l~~l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 482 SN-QLKSVPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp SS-CCCCCCTTSTTTCTTCCCEECCSCC
T ss_pred CC-CCCCCCHHHHhcCCCCCEEEecCCC
Confidence 98 68889976 8889999999999865
No 20
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.85 E-value=7.4e-21 Score=215.29 Aligned_cols=302 Identities=17% Similarity=0.184 Sum_probs=221.5
Q ss_pred cCCCCceEEEccCcCCcchhhhHHHhhccCCcceeecCC--CCCCCC-cccccCCCCCeEecCCCCCccccc-hhhcCCC
Q 001993 574 YDETKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL--PVGQIP-KGIKKLIHLRYLALGENPWIKELP-EALCELC 649 (985)
Q Consensus 574 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~--~~~~lp-~~i~~l~~Lr~L~L~~~~~i~~lP-~~i~~L~ 649 (985)
..+++++.|.+.++.. ....+..|.++++|++|+++ .+..+| ..+..+++|++|++++|. +..+| ..++.++
T Consensus 42 ~~l~~l~~l~l~~~~l---~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~ 117 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTM---RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVP 117 (390)
T ss_dssp GGGCCCSEEEEESCEE---SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCT
T ss_pred cccCCceEEEecCCch---hhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCC-CCcCCHHHhcCCC
Confidence 3467889999988753 33345567889999999998 566665 478999999999999998 77765 4588999
Q ss_pred CCcEeeccCcccccccchhh-hhccccceeecccccccccccC-CCcCCCCCCCCccCceEecCCCcccccCCchhhhcc
Q 001993 650 NLQTLDVSLCHYLKRLPERI-GQLINLRHLMNSKEEWSRLSYM-PRGMERLTGLRTLGAFVASGGKSSKACSSLKSLNKL 727 (985)
Q Consensus 650 ~L~~L~l~~~~~l~~lP~~i-~~L~~L~~L~l~~n~~~~l~~~-p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L 727 (985)
+|++|++++|. +..+|..+ ..+++|++|++++|.. ..+ |..++++++|++|++..+..... .+..+++|
T Consensus 118 ~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l---~~~~~~~~~~l~~L~~L~l~~n~l~~~-----~~~~l~~L 188 (390)
T 3o6n_A 118 LLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNL---ERIEDDTFQATTSLQNLQLSSNRLTHV-----DLSLIPSL 188 (390)
T ss_dssp TCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC---CBCCTTTTSSCTTCCEEECCSSCCSBC-----CGGGCTTC
T ss_pred CCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCcc---CccChhhccCCCCCCEEECCCCcCCcc-----cccccccc
Confidence 99999999998 88888775 8899999999996544 344 44588999999998876554431 23444444
Q ss_pred ccCcceeeecccccccCCCCcchhhhcccccccccccEEEEEcCCCCcchhHhhhcCCCCCCCCCeEEEeeccCCCCCCC
Q 001993 728 KHLEGSLTLRGLGNERDLGDDNDDEKVDLKSKMKLVDLHLRFDSTTKTKDHRVVLECLQPPSSLEKLGIYGYAGDTISPT 807 (985)
Q Consensus 728 ~~L~~~L~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 807 (985)
..| .+..+.+. .+....+|+.|+++.+... .+.. ..+++|+.|++++|.....
T Consensus 189 ~~L--~l~~n~l~--------------~~~~~~~L~~L~l~~n~l~------~~~~--~~~~~L~~L~l~~n~l~~~--- 241 (390)
T 3o6n_A 189 FHA--NVSYNLLS--------------TLAIPIAVEELDASHNSIN------VVRG--PVNVELTILKLQHNNLTDT--- 241 (390)
T ss_dssp SEE--ECCSSCCS--------------EEECCSSCSEEECCSSCCC------EEEC--CCCSSCCEEECCSSCCCCC---
T ss_pred cee--eccccccc--------------ccCCCCcceEEECCCCeee------eccc--cccccccEEECCCCCCccc---
Confidence 433 22211111 1233457888888766511 1111 2247899999999987653
Q ss_pred ChhhhccccccEEeEeccCCCCcCC-CCCCCCccceeeccCCCCceEeCCcccCCchhhhhhhhhhhcccccccCCCCCc
Q 001993 808 SDWMLSLAKLRVLTLRFCNECECLP-PLGKLPCLETLVLEGMSSVKRLGNGFLGIAEDHQARADQAETASSIIRDTAFPR 886 (985)
Q Consensus 808 p~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fp~ 886 (985)
.++..+++|+.|+|++|......| .++.+++|+.|+|++|. +..++... ..+|+
T Consensus 242 -~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~-----------------------~~l~~ 296 (390)
T 3o6n_A 242 -AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYG-----------------------QPIPT 296 (390)
T ss_dssp -GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSC-CCEEECSS-----------------------SCCTT
T ss_pred -HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCc-CcccCccc-----------------------CCCCC
Confidence 578899999999999996444434 58899999999999965 66665422 35899
Q ss_pred cceeeccccccccccccccccCcccccccccceeecccccCCCCCCCCCCCCCcCeEEecCch
Q 001993 887 LETLEFLDMEKWEEWDDCEIAGGKTIMPRLRHLSICWSPELKALPDYILGSTSLDKLLIYYSR 949 (985)
Q Consensus 887 L~~L~l~~~~~L~~~~~~~~~~~~~~lp~L~~L~i~~c~~L~~lp~~~~~l~~L~~L~i~~c~ 949 (985)
|++|+++++ .+..++. ....+++|+.|++++| .++.+| +..+++|+.|++++++
T Consensus 297 L~~L~L~~n-~l~~~~~-----~~~~l~~L~~L~L~~N-~i~~~~--~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 297 LKVLDLSHN-HLLHVER-----NQPQFDRLENLYLDHN-SIVTLK--LSTHHTLKNLTLSHND 350 (390)
T ss_dssp CCEEECCSS-CCCCCGG-----GHHHHTTCSEEECCSS-CCCCCC--CCTTCCCSEEECCSSC
T ss_pred CCEEECCCC-cceecCc-----cccccCcCCEEECCCC-ccceeC--chhhccCCEEEcCCCC
Confidence 999999996 4665544 3457899999999998 577776 6678999999999986
No 21
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.84 E-value=1.2e-20 Score=218.65 Aligned_cols=319 Identities=19% Similarity=0.197 Sum_probs=231.4
Q ss_pred CCCCceEEEccCcCCcchhhhHHHhhccCCcceeecCC--CCCCCCcccccCCCCCeEecCCCCCccccchhhcCCCCCc
Q 001993 575 DETKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL--PVGQIPKGIKKLIHLRYLALGENPWIKELPEALCELCNLQ 652 (985)
Q Consensus 575 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~--~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~ 652 (985)
.++++++|.+.++.... ++. +..+++|++|+++ .+..+|. ++.+++|++|++++|. +..+|. ++++++|+
T Consensus 44 ~l~~l~~L~l~~~~i~~----l~~-~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~ 115 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKS----IDG-VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQ-IADITP-LANLTNLT 115 (466)
T ss_dssp HHHTCCEEECCSSCCCC----CTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GTTCTTCC
T ss_pred HhccccEEecCCCCCcc----Ccc-hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCc-cccChh-hcCCCCCC
Confidence 46789999999886422 233 7889999999999 6777776 9999999999999998 888887 99999999
Q ss_pred EeeccCcccccccchhhhhccccceeecccccccccccCCCcCCCCCCCCccCceEecCCCcccccCCchhhhccccCcc
Q 001993 653 TLDVSLCHYLKRLPERIGQLINLRHLMNSKEEWSRLSYMPRGMERLTGLRTLGAFVASGGKSSKACSSLKSLNKLKHLEG 732 (985)
Q Consensus 653 ~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~n~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~ 732 (985)
+|++++|. +..+|. +..+++|++|++++|.. ..+| .++.+++|+.|.+.. ... .+..+.++++|+
T Consensus 116 ~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~n~l---~~~~-~~~~l~~L~~L~l~~-~~~-------~~~~~~~l~~L~- 180 (466)
T 1o6v_A 116 GLTLFNNQ-ITDIDP-LKNLTNLNRLELSSNTI---SDIS-ALSGLTSLQQLSFGN-QVT-------DLKPLANLTTLE- 180 (466)
T ss_dssp EEECCSSC-CCCCGG-GTTCTTCSEEEEEEEEE---CCCG-GGTTCTTCSEEEEEE-SCC-------CCGGGTTCTTCC-
T ss_pred EEECCCCC-CCCChH-HcCCCCCCEEECCCCcc---CCCh-hhccCCcccEeecCC-ccc-------CchhhccCCCCC-
Confidence 99999998 888876 99999999999996543 4454 588999999998752 211 122344444444
Q ss_pred eeeecccccccCCCCcchhhhcccccccccccEEEEEcCCCCcchhHhhhcCCCCCCCCCeEEEeeccCCCCCCCChhhh
Q 001993 733 SLTLRGLGNERDLGDDNDDEKVDLKSKMKLVDLHLRFDSTTKTKDHRVVLECLQPPSSLEKLGIYGYAGDTISPTSDWML 812 (985)
Q Consensus 733 ~L~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~ 812 (985)
.|.+.+.. +.. ...+..+++|+.|+++.+..... ..+..+++|+.|++++|....+ + .+.
T Consensus 181 ~L~l~~n~-l~~--------~~~l~~l~~L~~L~l~~n~l~~~-------~~~~~l~~L~~L~l~~n~l~~~---~-~l~ 240 (466)
T 1o6v_A 181 RLDISSNK-VSD--------ISVLAKLTNLESLIATNNQISDI-------TPLGILTNLDELSLNGNQLKDI---G-TLA 240 (466)
T ss_dssp EEECCSSC-CCC--------CGGGGGCTTCSEEECCSSCCCCC-------GGGGGCTTCCEEECCSSCCCCC---G-GGG
T ss_pred EEECcCCc-CCC--------ChhhccCCCCCEEEecCCccccc-------ccccccCCCCEEECCCCCcccc---h-hhh
Confidence 55554321 111 12367788999999987752111 1144578999999999987665 3 577
Q ss_pred ccccccEEeEeccCCCCcCCCCCCCCccceeeccCCCCceEeCCcccCCchhhhhhhhhhhcccccccCCCCCccceeec
Q 001993 813 SLAKLRVLTLRFCNECECLPPLGKLPCLETLVLEGMSSVKRLGNGFLGIAEDHQARADQAETASSIIRDTAFPRLETLEF 892 (985)
Q Consensus 813 ~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fp~L~~L~l 892 (985)
.+++|+.|++++|. +..+++++.+++|+.|++++|. +..++. +.....+..+.+..+..... .....+++|+.|++
T Consensus 241 ~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~L~~n~l~~~-~~~~~l~~L~~L~L 316 (466)
T 1o6v_A 241 SLTNLTDLDLANNQ-ISNLAPLSGLTKLTELKLGANQ-ISNISP-LAGLTALTNLELNENQLEDI-SPISNLKNLTYLTL 316 (466)
T ss_dssp GCTTCSEEECCSSC-CCCCGGGTTCTTCSEEECCSSC-CCCCGG-GTTCTTCSEEECCSSCCSCC-GGGGGCTTCSEEEC
T ss_pred cCCCCCEEECCCCc-cccchhhhcCCCCCEEECCCCc-cCcccc-ccCCCccCeEEcCCCcccCc-hhhcCCCCCCEEEC
Confidence 89999999999995 4556668999999999999975 544443 33333333444444433222 22457888999999
Q ss_pred cccccccccccccccCcccccccccceeecccccCCCCCCCCCCCCCcCeEEecCch
Q 001993 893 LDMEKWEEWDDCEIAGGKTIMPRLRHLSICWSPELKALPDYILGSTSLDKLLIYYSR 949 (985)
Q Consensus 893 ~~~~~L~~~~~~~~~~~~~~lp~L~~L~i~~c~~L~~lp~~~~~l~~L~~L~i~~c~ 949 (985)
+++ .+..+.. ...+++|+.|++++| .++.++ .+.++++|+.|++++|+
T Consensus 317 ~~n-~l~~~~~------~~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 317 YFN-NISDISP------VSSLTKLQRLFFYNN-KVSDVS-SLANLTNINWLSAGHNQ 364 (466)
T ss_dssp CSS-CCSCCGG------GGGCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSSC
T ss_pred cCC-cCCCchh------hccCccCCEeECCCC-ccCCch-hhccCCCCCEEeCCCCc
Confidence 886 3444433 347899999999998 677665 57789999999999886
No 22
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.84 E-value=1.2e-20 Score=226.97 Aligned_cols=126 Identities=17% Similarity=0.109 Sum_probs=73.1
Q ss_pred CCeEEEEEEcCCCCCccCCCccccCCCCceEEEccCcCCcchhhhHHHhhccCCcceeecCC--CCCCC-CcccccCCCC
Q 001993 551 WKARHLMITGETRSEMVPFPSMVYDETKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL--PVGQI-PKGIKKLIHL 627 (985)
Q Consensus 551 ~~~r~l~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~--~~~~l-p~~i~~l~~L 627 (985)
...+++.+.++.+... .+..+.++++|++|+++++.. ....+..|.++++|++|+++ .+..+ |..++.+++|
T Consensus 57 ~~L~~L~Ls~n~i~~~--~~~~~~~l~~L~~L~Ls~n~l---~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L 131 (606)
T 3t6q_A 57 INLTFLDLTRCQIYWI--HEDTFQSQHRLDTLVLTANPL---IFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTL 131 (606)
T ss_dssp TTCSEEECTTCCCCEE--CTTTTTTCTTCCEEECTTCCC---SEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTC
T ss_pred ccceEEECCCCcccee--ChhhccCccccCeeeCCCCcc---cccChhhhcccccccEeeccccCcccCCcchhccCCcc
Confidence 3566666666655321 245566677777777776643 22234456667777777776 44444 4556666777
Q ss_pred CeEecCCCCCccccc-hhhcCCCCCcEeeccCccccccc-chhhhhccccc--eeecccc
Q 001993 628 RYLALGENPWIKELP-EALCELCNLQTLDVSLCHYLKRL-PERIGQLINLR--HLMNSKE 683 (985)
Q Consensus 628 r~L~L~~~~~i~~lP-~~i~~L~~L~~L~l~~~~~l~~l-P~~i~~L~~L~--~L~l~~n 683 (985)
++|++++|. +..++ +.+..+++|++|++++|. +..+ |..+..+++|+ .|++++|
T Consensus 132 ~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~l~L~l~~n 189 (606)
T 3t6q_A 132 ESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNA-IHYLSKEDMSSLQQATNLSLNLNGN 189 (606)
T ss_dssp CEEECCSSC-CCCCCCCTTCCCTTCCEEECCSSC-CCEECHHHHHTTTTCCSEEEECTTC
T ss_pred cEEECCCCc-ccccCcccccCCcccCEEEcccCc-ccccChhhhhhhcccceeEEecCCC
Confidence 777777666 55541 223336667777776666 4433 44556666666 5555543
No 23
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.84 E-value=1.1e-20 Score=218.92 Aligned_cols=352 Identities=15% Similarity=0.119 Sum_probs=204.6
Q ss_pred CCCeEEEEEEcCCCCCccCCCccccCCCCceEEEccCcCCcchhhhHHHhhccCCcceeecCC--CCCCC-CcccccCCC
Q 001993 550 SWKARHLMITGETRSEMVPFPSMVYDETKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL--PVGQI-PKGIKKLIH 626 (985)
Q Consensus 550 ~~~~r~l~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~--~~~~l-p~~i~~l~~ 626 (985)
+..++++.+.++.+... .+..+.++++|++|.++++... ....+..|.++++|++|+++ .+..+ |..++.+++
T Consensus 29 ~~~l~~L~Ls~n~i~~~--~~~~~~~l~~L~~L~L~~n~~~--~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 104 (455)
T 3v47_A 29 PAHVNYVDLSLNSIAEL--NETSFSRLQDLQFLKVEQQTPG--LVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLAN 104 (455)
T ss_dssp CTTCCEEECCSSCCCEE--CTTTTSSCTTCCEEECCCCSTT--CEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTT
T ss_pred CCccCEEEecCCccCcC--ChhHhccCccccEEECcCCccc--ceECcccccccccCCEEeCCCCccCccChhhccCccc
Confidence 35667777776665322 2455667777777777776431 12224456677777777776 34443 566777777
Q ss_pred CCeEecCCCCCccc-cchh--hcCCCCCcEeeccCccccccc-chh-hhhccccceeecccccccccccCCCcCCCC--C
Q 001993 627 LRYLALGENPWIKE-LPEA--LCELCNLQTLDVSLCHYLKRL-PER-IGQLINLRHLMNSKEEWSRLSYMPRGMERL--T 699 (985)
Q Consensus 627 Lr~L~L~~~~~i~~-lP~~--i~~L~~L~~L~l~~~~~l~~l-P~~-i~~L~~L~~L~l~~n~~~~l~~~p~~i~~L--~ 699 (985)
|++|++++|. +.. .|.. +..+++|++|++++|. +..+ |.. +..+++|++|++++|... ...|..+..+ .
T Consensus 105 L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~l~~l~~~ 180 (455)
T 3v47_A 105 LEVLTLTQCN-LDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNKVK--SICEEDLLNFQGK 180 (455)
T ss_dssp CCEEECTTSC-CBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTCCBS--CCCTTTSGGGTTC
T ss_pred CCEEeCCCCC-CCccccCcccccCcccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCCccc--ccChhhhhccccc
Confidence 7777777776 443 3443 6677777777777776 4443 444 567777777777754432 2223344443 3
Q ss_pred CCCccCceEecCCCccccc------CCchhhhccccCcceeeecccccccCCCCcchhhhcccccccccccEEEEEcCCC
Q 001993 700 GLRTLGAFVASGGKSSKAC------SSLKSLNKLKHLEGSLTLRGLGNERDLGDDNDDEKVDLKSKMKLVDLHLRFDSTT 773 (985)
Q Consensus 700 ~L~~L~~~~~~~~~~~~~~------~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 773 (985)
+|+.|++..+......... ..+..+++|+ .|.+.+..- .. .............+|+.|.++.+...
T Consensus 181 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~----~L~Ls~n~l-~~---~~~~~~~~~~~~~~L~~L~l~~~~~~ 252 (455)
T 3v47_A 181 HFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSIT----TLDLSGNGF-KE---SMAKRFFDAIAGTKIQSLILSNSYNM 252 (455)
T ss_dssp EEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEE----EEECTTSCC-CH---HHHHHHHHHTTTCCEEEEECTTCTTT
T ss_pred cccccccccCcccccchhhccccccccccccceee----eEecCCCcc-cc---cchhhhhccccccceeeEeecccccc
Confidence 4455544333222211000 0011122222 233322110 00 00000111112255666666544210
Q ss_pred Ccc--------hhHhhhcCCCCCCCCCeEEEeeccCCCCCCCChhhhccccccEEeEeccCCCCcCC-CCCCCCccceee
Q 001993 774 KTK--------DHRVVLECLQPPSSLEKLGIYGYAGDTISPTSDWMLSLAKLRVLTLRFCNECECLP-PLGKLPCLETLV 844 (985)
Q Consensus 774 ~~~--------~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~ 844 (985)
... .....+..+ ..++|+.|++++|...... |.++..+++|+.|+|++|......| .++.+++|++|+
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 329 (455)
T 3v47_A 253 GSSFGHTNFKDPDNFTFKGL-EASGVKTCDLSKSKIFALL--KSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLN 329 (455)
T ss_dssp SCCTTCCSSCCCCTTTTGGG-TTSCCCEEECCSSCCCEEC--TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred ccccchhhhccCcccccccc-cccCceEEEecCccccccc--hhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEE
Confidence 000 000000001 2368999999998876653 7788899999999999996544444 588999999999
Q ss_pred ccCCCCceEeCCcccCCchhhhhhhhhhhcccccccCCCCCccceeeccccccccccccccccCcccccccccceeeccc
Q 001993 845 LEGMSSVKRLGNGFLGIAEDHQARADQAETASSIIRDTAFPRLETLEFLDMEKWEEWDDCEIAGGKTIMPRLRHLSICWS 924 (985)
Q Consensus 845 L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~lp~L~~L~i~~c 924 (985)
|++|. +..++...+ ..+++|++|+++++ .+..+.. .....+++|++|++++|
T Consensus 330 Ls~N~-l~~~~~~~~----------------------~~l~~L~~L~Ls~N-~l~~~~~----~~~~~l~~L~~L~L~~N 381 (455)
T 3v47_A 330 LSQNF-LGSIDSRMF----------------------ENLDKLEVLDLSYN-HIRALGD----QSFLGLPNLKELALDTN 381 (455)
T ss_dssp CCSSC-CCEECGGGG----------------------TTCTTCCEEECCSS-CCCEECT----TTTTTCTTCCEEECCSS
T ss_pred CCCCc-cCCcChhHh----------------------cCcccCCEEECCCC-cccccCh----hhccccccccEEECCCC
Confidence 99875 555543222 35889999999986 3444422 14457999999999997
Q ss_pred ccCCCCCC-CCCCCCCcCeEEecCch
Q 001993 925 PELKALPD-YILGSTSLDKLLIYYSR 949 (985)
Q Consensus 925 ~~L~~lp~-~~~~l~~L~~L~i~~c~ 949 (985)
.++.+|. .+..+++|+.|+|++|+
T Consensus 382 -~l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 382 -QLKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp -CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred -ccccCCHhHhccCCcccEEEccCCC
Confidence 6777875 45789999999999875
No 24
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.83 E-value=1.8e-20 Score=224.15 Aligned_cols=301 Identities=17% Similarity=0.184 Sum_probs=223.4
Q ss_pred CCCCceEEEccCcCCcchhhhHHHhhccCCcceeecCC--CCCCCC-cccccCCCCCeEecCCCCCccccch-hhcCCCC
Q 001993 575 DETKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL--PVGQIP-KGIKKLIHLRYLALGENPWIKELPE-ALCELCN 650 (985)
Q Consensus 575 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~--~~~~lp-~~i~~l~~Lr~L~L~~~~~i~~lP~-~i~~L~~ 650 (985)
.+++++.+.+.++.. ....+.+|.++++|++|+++ .+..+| ..++.+.+|++|+|++|. +..+|+ .++.+++
T Consensus 49 ~l~~l~~l~l~~~~l---~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~ 124 (597)
T 3oja_B 49 TLNNQKIVTFKNSTM---RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPL 124 (597)
T ss_dssp GGCCCSEEEESSCEE---SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTT
T ss_pred cCCCceEEEeeCCCC---CCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCc-CCCCCHHHHcCCCC
Confidence 467889999988764 33445668899999999998 566665 489999999999999998 777765 4689999
Q ss_pred CcEeeccCcccccccchhh-hhccccceeecccccccccccC-CCcCCCCCCCCccCceEecCCCcccccCCchhhhccc
Q 001993 651 LQTLDVSLCHYLKRLPERI-GQLINLRHLMNSKEEWSRLSYM-PRGMERLTGLRTLGAFVASGGKSSKACSSLKSLNKLK 728 (985)
Q Consensus 651 L~~L~l~~~~~l~~lP~~i-~~L~~L~~L~l~~n~~~~l~~~-p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~ 728 (985)
|++|+|++|. +..+|..+ +.+++|++|++++|.. ..+ |..++++++|++|++..+..... .+..+++|.
T Consensus 125 L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l---~~~~~~~~~~l~~L~~L~L~~N~l~~~-----~~~~l~~L~ 195 (597)
T 3oja_B 125 LTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNL---ERIEDDTFQATTSLQNLQLSSNRLTHV-----DLSLIPSLF 195 (597)
T ss_dssp CCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC---CBCCTTTTTTCTTCCEEECTTSCCSBC-----CGGGCTTCS
T ss_pred CCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcC---CCCChhhhhcCCcCcEEECcCCCCCCc-----Chhhhhhhh
Confidence 9999999998 88888764 8999999999996654 344 45689999999998876554431 234444444
Q ss_pred cCcceeeecccccccCCCCcchhhhcccccccccccEEEEEcCCCCcchhHhhhcCCCCCCCCCeEEEeeccCCCCCCCC
Q 001993 729 HLEGSLTLRGLGNERDLGDDNDDEKVDLKSKMKLVDLHLRFDSTTKTKDHRVVLECLQPPSSLEKLGIYGYAGDTISPTS 808 (985)
Q Consensus 729 ~L~~~L~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p 808 (985)
.| .+..+.+. .+....+|+.|+++++... .+... .+++|+.|++++|.... +
T Consensus 196 ~L--~l~~n~l~--------------~l~~~~~L~~L~ls~n~l~------~~~~~--~~~~L~~L~L~~n~l~~----~ 247 (597)
T 3oja_B 196 HA--NVSYNLLS--------------TLAIPIAVEELDASHNSIN------VVRGP--VNVELTILKLQHNNLTD----T 247 (597)
T ss_dssp EE--ECCSSCCS--------------EEECCTTCSEEECCSSCCC------EEECS--CCSCCCEEECCSSCCCC----C
T ss_pred hh--hcccCccc--------------cccCCchhheeeccCCccc------ccccc--cCCCCCEEECCCCCCCC----C
Confidence 33 22222111 2334457888888776511 11111 23689999999998654 5
Q ss_pred hhhhccccccEEeEeccCCCCcCC-CCCCCCccceeeccCCCCceEeCCcccCCchhhhhhhhhhhcccccccCCCCCcc
Q 001993 809 DWMLSLAKLRVLTLRFCNECECLP-PLGKLPCLETLVLEGMSSVKRLGNGFLGIAEDHQARADQAETASSIIRDTAFPRL 887 (985)
Q Consensus 809 ~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fp~L 887 (985)
.++..+++|+.|+|++|......| .++.+++|+.|+|++|. +..++... ..+|+|
T Consensus 248 ~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~-----------------------~~l~~L 303 (597)
T 3oja_B 248 AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYG-----------------------QPIPTL 303 (597)
T ss_dssp GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSC-CCEEECSS-----------------------SCCTTC
T ss_pred hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCC-CCCCCccc-----------------------ccCCCC
Confidence 788899999999999996554444 58899999999999965 66665422 358999
Q ss_pred ceeeccccccccccccccccCcccccccccceeecccccCCCCCCCCCCCCCcCeEEecCch
Q 001993 888 ETLEFLDMEKWEEWDDCEIAGGKTIMPRLRHLSICWSPELKALPDYILGSTSLDKLLIYYSR 949 (985)
Q Consensus 888 ~~L~l~~~~~L~~~~~~~~~~~~~~lp~L~~L~i~~c~~L~~lp~~~~~l~~L~~L~i~~c~ 949 (985)
+.|+|+++ .+..++. ....+++|+.|++++| .+..+| +..+++|+.|+|++||
T Consensus 304 ~~L~Ls~N-~l~~i~~-----~~~~l~~L~~L~L~~N-~l~~~~--~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 304 KVLDLSHN-HLLHVER-----NQPQFDRLENLYLDHN-SIVTLK--LSTHHTLKNLTLSHND 356 (597)
T ss_dssp CEEECCSS-CCCCCGG-----GHHHHTTCSEEECCSS-CCCCCC--CCTTCCCSEEECCSSC
T ss_pred cEEECCCC-CCCccCc-----ccccCCCCCEEECCCC-CCCCcC--hhhcCCCCEEEeeCCC
Confidence 99999986 4555544 3457999999999998 567676 6678999999999987
No 25
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.83 E-value=2e-20 Score=208.19 Aligned_cols=280 Identities=20% Similarity=0.255 Sum_probs=209.7
Q ss_pred ccCCcceeecCC--CCCCCCcccccCCCCCeEecCCCCCccccchhhcCCCCCcEeeccCcccccccchhhhhcccccee
Q 001993 601 DRLTCLRSIDGL--PVGQIPKGIKKLIHLRYLALGENPWIKELPEALCELCNLQTLDVSLCHYLKRLPERIGQLINLRHL 678 (985)
Q Consensus 601 ~~l~~Lr~L~l~--~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L 678 (985)
..++.|+.|+++ .+..+| .+..+++|++|++++|. +..+|. +..+++|++|++++|. +..+| .+..+++|++|
T Consensus 41 ~~l~~L~~L~l~~~~i~~~~-~~~~~~~L~~L~l~~n~-i~~~~~-~~~l~~L~~L~L~~n~-i~~~~-~~~~l~~L~~L 115 (347)
T 4fmz_A 41 EELESITKLVVAGEKVASIQ-GIEYLTNLEYLNLNGNQ-ITDISP-LSNLVKLTNLYIGTNK-ITDIS-ALQNLTNLREL 115 (347)
T ss_dssp HHHTTCSEEECCSSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSC-CCCCG-GGTTCTTCSEE
T ss_pred hhcccccEEEEeCCccccch-hhhhcCCccEEEccCCc-cccchh-hhcCCcCCEEEccCCc-ccCch-HHcCCCcCCEE
Confidence 456777778777 556665 48899999999999998 899988 9999999999999997 77776 59999999999
Q ss_pred ecccccccccccCCCcCCCCCCCCccCceEecCCCcccccCCchhhhccccCcceeeecccccccCCCCcchhhhccccc
Q 001993 679 MNSKEEWSRLSYMPRGMERLTGLRTLGAFVASGGKSSKACSSLKSLNKLKHLEGSLTLRGLGNERDLGDDNDDEKVDLKS 758 (985)
Q Consensus 679 ~l~~n~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~~~~l~~ 758 (985)
++++|.. ..+|. +..+++|++|++..+.... .+..+..+++|+ .|.+.+..- .. ...+..
T Consensus 116 ~l~~n~i---~~~~~-~~~l~~L~~L~l~~n~~~~------~~~~~~~l~~L~-~L~l~~~~~-~~--------~~~~~~ 175 (347)
T 4fmz_A 116 YLNEDNI---SDISP-LANLTKMYSLNLGANHNLS------DLSPLSNMTGLN-YLTVTESKV-KD--------VTPIAN 175 (347)
T ss_dssp ECTTSCC---CCCGG-GTTCTTCCEEECTTCTTCC------CCGGGTTCTTCC-EEECCSSCC-CC--------CGGGGG
T ss_pred ECcCCcc---cCchh-hccCCceeEEECCCCCCcc------cccchhhCCCCc-EEEecCCCc-CC--------chhhcc
Confidence 9996544 45555 8899999999887654333 233344444454 555544321 11 112677
Q ss_pred ccccccEEEEEcCCCCcchhHhhhcCCCCCCCCCeEEEeeccCCCCCCCChhhhccccccEEeEeccCCCCcCCCCCCCC
Q 001993 759 KMKLVDLHLRFDSTTKTKDHRVVLECLQPPSSLEKLGIYGYAGDTISPTSDWMLSLAKLRVLTLRFCNECECLPPLGKLP 838 (985)
Q Consensus 759 ~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~ 838 (985)
+++|+.|+++++.... ...+..+++|+.|++++|..... +. +..+++|+.|++++| .+..++.+..++
T Consensus 176 l~~L~~L~l~~n~l~~-------~~~~~~l~~L~~L~l~~n~l~~~---~~-~~~~~~L~~L~l~~n-~l~~~~~~~~l~ 243 (347)
T 4fmz_A 176 LTDLYSLSLNYNQIED-------ISPLASLTSLHYFTAYVNQITDI---TP-VANMTRLNSLKIGNN-KITDLSPLANLS 243 (347)
T ss_dssp CTTCSEEECTTSCCCC-------CGGGGGCTTCCEEECCSSCCCCC---GG-GGGCTTCCEEECCSS-CCCCCGGGTTCT
T ss_pred CCCCCEEEccCCcccc-------cccccCCCccceeecccCCCCCC---ch-hhcCCcCCEEEccCC-ccCCCcchhcCC
Confidence 8899999998765111 11155678999999999987766 43 778999999999999 455666689999
Q ss_pred ccceeeccCCCCceEeCCcccCCchhhhhhhhhhhcccccccCCCCCccceeeccccccccccccccccCcccccccccc
Q 001993 839 CLETLVLEGMSSVKRLGNGFLGIAEDHQARADQAETASSIIRDTAFPRLETLEFLDMEKWEEWDDCEIAGGKTIMPRLRH 918 (985)
Q Consensus 839 ~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~lp~L~~ 918 (985)
+|+.|++++|. +..++. ...+++|++|+++++ .+..+.. ...+++|+.
T Consensus 244 ~L~~L~l~~n~-l~~~~~------------------------~~~l~~L~~L~l~~n-~l~~~~~------~~~l~~L~~ 291 (347)
T 4fmz_A 244 QLTWLEIGTNQ-ISDINA------------------------VKDLTKLKMLNVGSN-QISDISV------LNNLSQLNS 291 (347)
T ss_dssp TCCEEECCSSC-CCCCGG------------------------GTTCTTCCEEECCSS-CCCCCGG------GGGCTTCSE
T ss_pred CCCEEECCCCc-cCCChh------------------------HhcCCCcCEEEccCC-ccCCChh------hcCCCCCCE
Confidence 99999999975 444321 246899999999986 4555532 447999999
Q ss_pred eeecccccCCCCCCCCCCCCCcCeEEecCch
Q 001993 919 LSICWSPELKALPDYILGSTSLDKLLIYYSR 949 (985)
Q Consensus 919 L~i~~c~~L~~lp~~~~~l~~L~~L~i~~c~ 949 (985)
|++++|......|..+..+++|+.|++++|+
T Consensus 292 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 292 LFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp EECCSSCCCGGGHHHHHTCTTCSEEECCSSS
T ss_pred EECcCCcCCCcChhHhhccccCCEEEccCCc
Confidence 9999995444445667889999999999997
No 26
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.83 E-value=2.1e-20 Score=228.16 Aligned_cols=153 Identities=18% Similarity=0.118 Sum_probs=114.4
Q ss_pred CCCeEEEEEEcCCCCCccCCCccccCCCCceEEEccCcCCcchhhhHHHhhccCCcceeecCC--CCCCCCc-ccccCCC
Q 001993 550 SWKARHLMITGETRSEMVPFPSMVYDETKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL--PVGQIPK-GIKKLIH 626 (985)
Q Consensus 550 ~~~~r~l~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~--~~~~lp~-~i~~l~~ 626 (985)
+..++++.+.++.+.... +..+.++++|++|+++++.. ....+..|.++++|++|+++ .+..+|. .++++.+
T Consensus 24 ~~~l~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l---~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~ 98 (680)
T 1ziw_A 24 PTNITVLNLTHNQLRRLP--AANFTRYSQLTSLDVGFNTI---SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTN 98 (680)
T ss_dssp CTTCSEEECCSSCCCCCC--GGGGGGGTTCSEEECCSSCC---CCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCCCcEEECCCCCCCCcC--HHHHhCCCcCcEEECCCCcc---CccCHHHHhcccCcCEEECCCCccCccChhhhccCCC
Confidence 467889999888774322 34578889999999998864 33345668889999999998 6777876 5899999
Q ss_pred CCeEecCCCCCccccc-hhhcCCCCCcEeeccCcccccccchhhhhccccceeecccccccccccCCCc---CCCCCCCC
Q 001993 627 LRYLALGENPWIKELP-EALCELCNLQTLDVSLCHYLKRLPERIGQLINLRHLMNSKEEWSRLSYMPRG---MERLTGLR 702 (985)
Q Consensus 627 Lr~L~L~~~~~i~~lP-~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~n~~~~l~~~p~~---i~~L~~L~ 702 (985)
|++|++++|. +..+| ..++++++|++|++++|......|..++++++|++|++++|.. ..++.. ...+++|+
T Consensus 99 L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l---~~~~~~~~~~~~~~~L~ 174 (680)
T 1ziw_A 99 LTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKI---QALKSEELDIFANSSLK 174 (680)
T ss_dssp CSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCC---CCBCHHHHGGGTTCEES
T ss_pred CCEEECCCCc-cCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcc---cccCHHHhhcccccccc
Confidence 9999999998 77776 5688999999999999984444556678899999999986543 333322 23557788
Q ss_pred ccCceEecC
Q 001993 703 TLGAFVASG 711 (985)
Q Consensus 703 ~L~~~~~~~ 711 (985)
.|++..+..
T Consensus 175 ~L~L~~n~l 183 (680)
T 1ziw_A 175 KLELSSNQI 183 (680)
T ss_dssp EEECTTCCC
T ss_pred EEECCCCcc
Confidence 887765543
No 27
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.83 E-value=9.5e-20 Score=212.21 Aligned_cols=291 Identities=20% Similarity=0.181 Sum_probs=173.8
Q ss_pred CCceEEEccCcCCcchhhhHHHhhccCCcceeecCC--CCCCC-CcccccCCCCCeEecCCCCCccccchh-hcCCCCCc
Q 001993 577 TKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL--PVGQI-PKGIKKLIHLRYLALGENPWIKELPEA-LCELCNLQ 652 (985)
Q Consensus 577 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~--~~~~l-p~~i~~l~~Lr~L~L~~~~~i~~lP~~-i~~L~~L~ 652 (985)
++++.|+++++.. ....+..|.++++|++|+++ .+..+ |..+.++++|++|+|++|. +..+|.. +..+++|+
T Consensus 32 ~~l~~L~L~~n~l---~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~ 107 (477)
T 2id5_A 32 TETRLLDLGKNRI---KTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNLT 107 (477)
T ss_dssp TTCSEEECCSSCC---CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSSTTCTTCC
T ss_pred CCCcEEECCCCcc---ceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc-CCccCcccccCCCCCC
Confidence 5789999988864 33335568889999999998 45555 6788899999999999998 8888864 68899999
Q ss_pred EeeccCcccccccchhhhhccccceeecccccccccccCCCcCCCCCCCCccCceEecCCCcccccCCchhhhccccCcc
Q 001993 653 TLDVSLCHYLKRLPERIGQLINLRHLMNSKEEWSRLSYMPRGMERLTGLRTLGAFVASGGKSSKACSSLKSLNKLKHLEG 732 (985)
Q Consensus 653 ~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~n~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~ 732 (985)
+|+|++|......|..+..+++|++|++++|.... ..|..++++++|+.|++..+........ .+..+++|+
T Consensus 108 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~--~l~~l~~L~---- 179 (477)
T 2id5_A 108 KLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVY--ISHRAFSGLNSLEQLTLEKCNLTSIPTE--ALSHLHGLI---- 179 (477)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCE--ECTTSSTTCTTCCEEEEESCCCSSCCHH--HHTTCTTCC----
T ss_pred EEECCCCccccCChhHccccccCCEEECCCCccce--eChhhccCCCCCCEEECCCCcCcccChh--HhcccCCCc----
Confidence 99999988444446678889999999998655432 2345688888888888876544331111 122333333
Q ss_pred eeeecc--cccccCCCCcchhhhcccccccccccEEEEEcCCCCcchhHhhhcCCCCCCCCCeEEEeeccCCCCCCCC-h
Q 001993 733 SLTLRG--LGNERDLGDDNDDEKVDLKSKMKLVDLHLRFDSTTKTKDHRVVLECLQPPSSLEKLGIYGYAGDTISPTS-D 809 (985)
Q Consensus 733 ~L~i~~--l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p-~ 809 (985)
.|.+.. +..+ ....+..+++|+.|+++.+... ..+........+|+.|++++|....+ | .
T Consensus 180 ~L~l~~n~i~~~---------~~~~~~~l~~L~~L~l~~~~~~-----~~~~~~~~~~~~L~~L~l~~n~l~~~---~~~ 242 (477)
T 2id5_A 180 VLRLRHLNINAI---------RDYSFKRLYRLKVLEISHWPYL-----DTMTPNCLYGLNLTSLSITHCNLTAV---PYL 242 (477)
T ss_dssp EEEEESCCCCEE---------CTTCSCSCTTCCEEEEECCTTC-----CEECTTTTTTCCCSEEEEESSCCCSC---CHH
T ss_pred EEeCCCCcCcEe---------ChhhcccCcccceeeCCCCccc-----cccCcccccCccccEEECcCCccccc---CHH
Confidence 333322 1111 1123455566666666654311 11112222233666666666665555 4 3
Q ss_pred hhhccccccEEeEeccCCCCcCC--CCCCCCccceeeccCCCCceEeCCcccCCchhhhhhhhhhhcccccccCCCCCcc
Q 001993 810 WMLSLAKLRVLTLRFCNECECLP--PLGKLPCLETLVLEGMSSVKRLGNGFLGIAEDHQARADQAETASSIIRDTAFPRL 887 (985)
Q Consensus 810 ~~~~l~~L~~L~L~~~~~~~~l~--~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fp~L 887 (985)
.+..+++|+.|+|++|. +..++ .+..+++|+.|+|+++. +..++...+ ..+++|
T Consensus 243 ~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~----------------------~~l~~L 298 (477)
T 2id5_A 243 AVRHLVYLRFLNLSYNP-ISTIEGSMLHELLRLQEIQLVGGQ-LAVVEPYAF----------------------RGLNYL 298 (477)
T ss_dssp HHTTCTTCCEEECCSSC-CCEECTTSCTTCTTCCEEECCSSC-CSEECTTTB----------------------TTCTTC
T ss_pred HhcCccccCeeECCCCc-CCccChhhccccccCCEEECCCCc-cceECHHHh----------------------cCcccC
Confidence 45566666666666664 23332 25566666666666643 333322111 235566
Q ss_pred ceeeccccccccccccccccCcccccccccceeecccc
Q 001993 888 ETLEFLDMEKWEEWDDCEIAGGKTIMPRLRHLSICWSP 925 (985)
Q Consensus 888 ~~L~l~~~~~L~~~~~~~~~~~~~~lp~L~~L~i~~c~ 925 (985)
+.|+++++ .++.+... ....+++|+.|++.+|+
T Consensus 299 ~~L~L~~N-~l~~~~~~----~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 299 RVLNVSGN-QLTTLEES----VFHSVGNLETLILDSNP 331 (477)
T ss_dssp CEEECCSS-CCSCCCGG----GBSCGGGCCEEECCSSC
T ss_pred CEEECCCC-cCceeCHh----HcCCCcccCEEEccCCC
Confidence 66666653 33333321 12345666666666553
No 28
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.83 E-value=3.2e-20 Score=203.94 Aligned_cols=230 Identities=21% Similarity=0.243 Sum_probs=157.9
Q ss_pred CCcceeecCC--CCCCCCcccccCCCCCeEecCCCCCccccchhhcCCCCCcEeeccCcccccccchhhhhccccceeec
Q 001993 603 LTCLRSIDGL--PVGQIPKGIKKLIHLRYLALGENPWIKELPEALCELCNLQTLDVSLCHYLKRLPERIGQLINLRHLMN 680 (985)
Q Consensus 603 l~~Lr~L~l~--~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l 680 (985)
...++.|+++ .+..+|..++++++|++|+|++|. +..+|..++++++|++|++++|. +..+|..++.+++|++|++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARNP-LRALPASIASLNRLRELSI 157 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSC-CCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGCTTCCEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCC-ccchhHHHhccCCCCEEECCCCc-cccCcHHHhcCcCCCEEEC
Confidence 4667777776 566778778888888888888887 77888888888888888888877 6677877888888888888
Q ss_pred ccccccccccCCCcCCCCCCCCccCceEecCCCcccccCCchhhhccccCcceeeecccccccCCCCcchhhhccccccc
Q 001993 681 SKEEWSRLSYMPRGMERLTGLRTLGAFVASGGKSSKACSSLKSLNKLKHLEGSLTLRGLGNERDLGDDNDDEKVDLKSKM 760 (985)
Q Consensus 681 ~~n~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~~~~l~~~~ 760 (985)
+ +|.....+|..++. .. +
T Consensus 158 ~--~n~~~~~~p~~~~~-----------------------------~~-~------------------------------ 175 (328)
T 4fcg_A 158 R--ACPELTELPEPLAS-----------------------------TD-A------------------------------ 175 (328)
T ss_dssp E--EETTCCCCCSCSEE-----------------------------EC--------------------------------
T ss_pred C--CCCCccccChhHhh-----------------------------cc-c------------------------------
Confidence 7 33333344432211 00 0
Q ss_pred ccccEEEEEcCCCCcchhHhhhcCCCCCCCCCeEEEeeccCCCCCCCChhhhccccccEEeEeccCCCCcCCCCCCCCcc
Q 001993 761 KLVDLHLRFDSTTKTKDHRVVLECLQPPSSLEKLGIYGYAGDTISPTSDWMLSLAKLRVLTLRFCNECECLPPLGKLPCL 840 (985)
Q Consensus 761 ~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L 840 (985)
...+..+++|+.|++++|....+ |.++..+++|+.|+|++|......+.++.+++|
T Consensus 176 ---------------------~~~~~~l~~L~~L~L~~n~l~~l---p~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L 231 (328)
T 4fcg_A 176 ---------------------SGEHQGLVNLQSLRLEWTGIRSL---PASIANLQNLKSLKIRNSPLSALGPAIHHLPKL 231 (328)
T ss_dssp ---------------------CCCEEESTTCCEEEEEEECCCCC---CGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTC
T ss_pred ---------------------hhhhccCCCCCEEECcCCCcCcc---hHhhcCCCCCCEEEccCCCCCcCchhhccCCCC
Confidence 00011234566666666665555 777777777777777777443322346677777
Q ss_pred ceeeccCCCCceEeCCcccCCchhhhhhhhhhhcccccccCCCCCccceeeccccccccccccccccCccccccccccee
Q 001993 841 ETLVLEGMSSVKRLGNGFLGIAEDHQARADQAETASSIIRDTAFPRLETLEFLDMEKWEEWDDCEIAGGKTIMPRLRHLS 920 (985)
Q Consensus 841 ~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~lp~L~~L~ 920 (985)
++|+|++|+....++..+ ..+++|++|++++|..+..++. ....+++|+.|+
T Consensus 232 ~~L~Ls~n~~~~~~p~~~-----------------------~~l~~L~~L~L~~n~~~~~~p~-----~~~~l~~L~~L~ 283 (328)
T 4fcg_A 232 EELDLRGCTALRNYPPIF-----------------------GGRAPLKRLILKDCSNLLTLPL-----DIHRLTQLEKLD 283 (328)
T ss_dssp CEEECTTCTTCCBCCCCT-----------------------TCCCCCCEEECTTCTTCCBCCT-----TGGGCTTCCEEE
T ss_pred CEEECcCCcchhhhHHHh-----------------------cCCCCCCEEECCCCCchhhcch-----hhhcCCCCCEEe
Confidence 777777776555554432 3467788888887766665554 345789999999
Q ss_pred ecccccCCCCCCCCCCCCCcCeEEecCc
Q 001993 921 ICWSPELKALPDYILGSTSLDKLLIYYS 948 (985)
Q Consensus 921 i~~c~~L~~lp~~~~~l~~L~~L~i~~c 948 (985)
+++|+.++.+|..+.++++|+.+.+...
T Consensus 284 L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 284 LRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp CTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred CCCCCchhhccHHHhhccCceEEeCCHH
Confidence 9999999999998999999999987743
No 29
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.83 E-value=5.2e-20 Score=219.82 Aligned_cols=130 Identities=26% Similarity=0.233 Sum_probs=106.5
Q ss_pred CCceEEEccCcCCcchhhhHHHhhccCCcceeecCC--CCCCCC-cccccCCCCCeEecCCCCCccccc-hhhcCCCCCc
Q 001993 577 TKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL--PVGQIP-KGIKKLIHLRYLALGENPWIKELP-EALCELCNLQ 652 (985)
Q Consensus 577 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~--~~~~lp-~~i~~l~~Lr~L~L~~~~~i~~lP-~~i~~L~~L~ 652 (985)
+.++.|+++++.. ....+..|.++++|++|+++ .+..++ ..++++++|++|+|++|. +..+| ..++.+++|+
T Consensus 28 ~~l~~L~Ls~n~l---~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~ 103 (570)
T 2z63_A 28 FSTKNLDLSFNPL---RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQ 103 (570)
T ss_dssp SSCCEEECCSCCC---CEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCC
T ss_pred ccccEEEccCCcc---CccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCc-CCccCHhhhcCccccc
Confidence 5799999999874 33334568999999999999 466664 568999999999999999 77776 6799999999
Q ss_pred EeeccCcccccccch-hhhhccccceeecccccccccccCCCcCCCCCCCCccCceEecCC
Q 001993 653 TLDVSLCHYLKRLPE-RIGQLINLRHLMNSKEEWSRLSYMPRGMERLTGLRTLGAFVASGG 712 (985)
Q Consensus 653 ~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~n~~~~l~~~p~~i~~L~~L~~L~~~~~~~~ 712 (985)
+|++++|. +..+|. .++.+++|++|++++|.... ..+|..++++++|++|++..+...
T Consensus 104 ~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~-~~lp~~~~~l~~L~~L~l~~n~l~ 162 (570)
T 2z63_A 104 KLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQS-FKLPEYFSNLTNLEHLDLSSNKIQ 162 (570)
T ss_dssp EEECTTSC-CCCSTTCSCTTCTTCCEEECCSSCCCC-CCCCGGGGGCTTCCEEECTTSCCC
T ss_pred cccccccc-cccCCCccccccccccEEecCCCccce-ecChhhhcccCCCCEEeCcCCccc
Confidence 99999998 777775 68999999999999664432 147889999999999998765443
No 30
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.82 E-value=8e-20 Score=227.49 Aligned_cols=277 Identities=17% Similarity=0.130 Sum_probs=169.5
Q ss_pred CCCCeEEEEEEcCCCCCccCCCccccCCCCceEEEccCcCCcchhhhHHHhhccCCcceeecCC--CCCCC-CcccccCC
Q 001993 549 PSWKARHLMITGETRSEMVPFPSMVYDETKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL--PVGQI-PKGIKKLI 625 (985)
Q Consensus 549 ~~~~~r~l~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~--~~~~l-p~~i~~l~ 625 (985)
.+..++++.+.++.+... .+..+..+++|++|+++++.. ...+.+..|.++++|++|+++ .+..+ |..++++.
T Consensus 22 lp~~l~~LdLs~N~i~~i--~~~~~~~l~~L~~LdLs~n~~--~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~ 97 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTV--TASSFPFLEQLQLLELGSQYT--PLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLF 97 (844)
T ss_dssp SCTTCCEEEEESCCCCEE--CSSSCSSCCSCSEEEECTTCC--CCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCS
T ss_pred CCCCcCEEECCCCcCCcc--ChhHCcccccCeEEeCCCCCC--ccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCc
Confidence 456788999998877533 356778899999999988843 122235668889999999998 45555 77888999
Q ss_pred CCCeEecCCCCCccc-cchh--hcCCCCCcEeeccCccccccc--chhhhhccccceeeccccccccc------------
Q 001993 626 HLRYLALGENPWIKE-LPEA--LCELCNLQTLDVSLCHYLKRL--PERIGQLINLRHLMNSKEEWSRL------------ 688 (985)
Q Consensus 626 ~Lr~L~L~~~~~i~~-lP~~--i~~L~~L~~L~l~~~~~l~~l--P~~i~~L~~L~~L~l~~n~~~~l------------ 688 (985)
+|++|+|++|. +.. +|.. +++|++|++|+|++|. +..+ +..+++|++|++|++++|....+
T Consensus 98 ~L~~L~Ls~n~-l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~ 175 (844)
T 3j0a_A 98 HLFELRLYFCG-LSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKT 175 (844)
T ss_dssp SCCCEECTTCC-CSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCS
T ss_pred ccCEeeCcCCC-CCcccccCccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCc
Confidence 99999999988 543 5655 8889999999999887 5444 25688889999998886644221
Q ss_pred ------------ccCCCcCCCCCC------CCccCceEecCCCcccccCCchh---------------------------
Q 001993 689 ------------SYMPRGMERLTG------LRTLGAFVASGGKSSKACSSLKS--------------------------- 723 (985)
Q Consensus 689 ------------~~~p~~i~~L~~------L~~L~~~~~~~~~~~~~~~~l~~--------------------------- 723 (985)
...|..++.+.+ |+.|++..+........ .+..
T Consensus 176 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~--~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~ 253 (844)
T 3j0a_A 176 LSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITG--NFSNAISKSQAFSLILAHHIMGAGFGFHNIK 253 (844)
T ss_dssp SCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTS--GGGGTSCSCCBSEEECCSSCCBCSSSCSSST
T ss_pred cceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHH--HHHhhcCcccccceecccccccccccccccC
Confidence 011222222222 55555544321110000 0000
Q ss_pred ------hhcc--ccCcceeeecccccccCCCCcchhhhcccccccccccEEEEEcCCCCcchhHhhhcCCCCCCCCCeEE
Q 001993 724 ------LNKL--KHLEGSLTLRGLGNERDLGDDNDDEKVDLKSKMKLVDLHLRFDSTTKTKDHRVVLECLQPPSSLEKLG 795 (985)
Q Consensus 724 ------L~~L--~~L~~~L~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~ 795 (985)
+..+ .+|+ .|.+.... ........+..+++|+.|+++.+.- .......+..+++|+.|+
T Consensus 254 ~~~~~~f~~l~~~~L~-~L~Ls~n~-------l~~~~~~~~~~l~~L~~L~L~~n~i-----~~~~~~~~~~l~~L~~L~ 320 (844)
T 3j0a_A 254 DPDQNTFAGLARSSVR-HLDLSHGF-------VFSLNSRVFETLKDLKVLNLAYNKI-----NKIADEAFYGLDNLQVLN 320 (844)
T ss_dssp TGGGTTTTTTTTSCCC-EEECTTCC-------CCEECSCCSSSCCCCCEEEEESCCC-----CEECTTTTTTCSSCCEEE
T ss_pred CCChhhhhccccCCcc-EEECCCCc-------ccccChhhhhcCCCCCEEECCCCcC-----CCCChHHhcCCCCCCEEE
Confidence 0000 1222 23322210 0111123456677888888886651 112233456667888888
Q ss_pred EeeccCCCCCCCChhhhccccccEEeEeccCCCCcCC--CCCCCCccceeeccCCC
Q 001993 796 IYGYAGDTISPTSDWMLSLAKLRVLTLRFCNECECLP--PLGKLPCLETLVLEGMS 849 (985)
Q Consensus 796 l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~--~l~~l~~L~~L~L~~~~ 849 (985)
+++|....+. |.++..+++|+.|+|++|. +..++ .++.+++|+.|+|++|.
T Consensus 321 Ls~N~l~~~~--~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N~ 373 (844)
T 3j0a_A 321 LSYNLLGELY--SSNFYGLPKVAYIDLQKNH-IAIIQDQTFKFLEKLQTLDLRDNA 373 (844)
T ss_dssp EESCCCSCCC--SCSCSSCTTCCEEECCSCC-CCCCCSSCSCSCCCCCEEEEETCC
T ss_pred CCCCCCCccC--HHHhcCCCCCCEEECCCCC-CCccChhhhcCCCCCCEEECCCCC
Confidence 8887765543 5667777788888887774 34444 36677777777777653
No 31
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.82 E-value=7.1e-20 Score=217.49 Aligned_cols=360 Identities=19% Similarity=0.133 Sum_probs=208.7
Q ss_pred CCccccCCCCceEEEccCcCCcchhhhHHHhhccCCcceeecCC--CCCCCC-cccccCCCCCeEecCCCCCccccchh-
Q 001993 569 FPSMVYDETKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL--PVGQIP-KGIKKLIHLRYLALGENPWIKELPEA- 644 (985)
Q Consensus 569 ~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~--~~~~lp-~~i~~l~~Lr~L~L~~~~~i~~lP~~- 644 (985)
+|..+. ++|++|+++++.. ....+..|.++++|++|+++ .+..++ ..++.+.+|++|+|++|. +..+|..
T Consensus 20 ip~~~~--~~L~~L~Ls~n~l---~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~ 93 (549)
T 2z81_A 20 IPSGLT--AAMKSLDLSFNKI---TYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH-LSSLSSSW 93 (549)
T ss_dssp CCSCCC--TTCCEEECCSSCC---CEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CCSCCHHH
T ss_pred ccccCC--CCccEEECcCCcc---CccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCc-cCccCHHH
Confidence 444433 7899999999874 33345568999999999999 566665 679999999999999999 8777765
Q ss_pred hcCCCCCcEeeccCcccccc--cchhhhhccccceeecccccccccccCC-CcCCCCCCCCccCceEecCCCcccccCCc
Q 001993 645 LCELCNLQTLDVSLCHYLKR--LPERIGQLINLRHLMNSKEEWSRLSYMP-RGMERLTGLRTLGAFVASGGKSSKACSSL 721 (985)
Q Consensus 645 i~~L~~L~~L~l~~~~~l~~--lP~~i~~L~~L~~L~l~~n~~~~l~~~p-~~i~~L~~L~~L~~~~~~~~~~~~~~~~l 721 (985)
++.+++|++|++++|. +.. .|..++.+++|++|++++|. .+..+| ..++++++|++|++..+..... ....+
T Consensus 94 ~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~--~~~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~l 168 (549)
T 2z81_A 94 FGPLSSLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVE--TFSEIRRIDFAGLTSLNELEIKALSLRNY--QSQSL 168 (549)
T ss_dssp HTTCTTCCEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESS--SCCEECTTTTTTCCEEEEEEEEETTCCEE--CTTTT
T ss_pred hccCCCCcEEECCCCc-ccccchhhhhhccCCccEEECCCCc--cccccCHhhhhcccccCeeeccCCccccc--Chhhh
Confidence 9999999999999998 653 46789999999999999543 235666 5799999999999987654431 11234
Q ss_pred hhhhccccCcceeeecccccccC------------------CCCcchhhhcccccccccccEEEEEcCCCCcchhHhhh-
Q 001993 722 KSLNKLKHLEGSLTLRGLGNERD------------------LGDDNDDEKVDLKSKMKLVDLHLRFDSTTKTKDHRVVL- 782 (985)
Q Consensus 722 ~~L~~L~~L~~~L~i~~l~~~~~------------------~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~- 782 (985)
..+++|+.| .+..+....+.. +.............+++|+.|.++.+... ......+.
T Consensus 169 ~~l~~L~~L--~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~l~~ 245 (549)
T 2z81_A 169 KSIRDIHHL--TLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLT-DESFNELLK 245 (549)
T ss_dssp TTCSEEEEE--EEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEE-HHHHHHHHG
T ss_pred hccccCceE--ecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccc-hhHHHHHHH
Confidence 444444433 122111100000 00000000000111223333333221100 00000000
Q ss_pred -----------------------------cCCC-----------------------------CCCCCCeEEEeeccCCCC
Q 001993 783 -----------------------------ECLQ-----------------------------PPSSLEKLGIYGYAGDTI 804 (985)
Q Consensus 783 -----------------------------~~l~-----------------------------~~~~L~~L~l~~~~~~~~ 804 (985)
..+. ...+|+.|++++|....+
T Consensus 246 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~i 325 (549)
T 2z81_A 246 LLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLV 325 (549)
T ss_dssp GGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCC
T ss_pred HhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccC
Confidence 0000 124566777777665555
Q ss_pred CCCChhh-hccccccEEeEeccCCCCcCC----CCCCCCccceeeccCCCCceEeCC---cccCCchhhhhhhhhhhccc
Q 001993 805 SPTSDWM-LSLAKLRVLTLRFCNECECLP----PLGKLPCLETLVLEGMSSVKRLGN---GFLGIAEDHQARADQAETAS 876 (985)
Q Consensus 805 ~~~p~~~-~~l~~L~~L~L~~~~~~~~l~----~l~~l~~L~~L~L~~~~~l~~l~~---~~~~~~~~~~~~~~~~~~~~ 876 (985)
|.++ ..+++|+.|+|++|...+.+| .++.+++|+.|+|++|. ++.++. .+.....+..+.++.+....
T Consensus 326 ---p~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 401 (549)
T 2z81_A 326 ---PCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH-LRSMQKTGEILLTLKNLTSLDISRNTFHP 401 (549)
T ss_dssp ---CHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSC-CCCHHHHHHHGGGCTTCCEEECTTCCCCC
T ss_pred ---CHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCc-ccccccchhhhhcCCCCCEEECCCCCCcc
Confidence 7666 368888888888886544332 36677778888887754 443321 12222223333344443332
Q ss_pred ccccCCCCCccceeecccccccccccccc-------------ccCcccccccccceeecccccCCCCCCCCCCCCCcCeE
Q 001993 877 SIIRDTAFPRLETLEFLDMEKWEEWDDCE-------------IAGGKTIMPRLRHLSICWSPELKALPDYILGSTSLDKL 943 (985)
Q Consensus 877 ~~~~~~~fp~L~~L~l~~~~~L~~~~~~~-------------~~~~~~~lp~L~~L~i~~c~~L~~lp~~~~~l~~L~~L 943 (985)
.......+++|++|+++++. ++.++... ..+....+++|+.|++++| .++.+|. ...+++|+.|
T Consensus 402 lp~~~~~~~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N-~l~~ip~-~~~l~~L~~L 478 (549)
T 2z81_A 402 MPDSCQWPEKMRFLNLSSTG-IRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRN-KLKTLPD-ASLFPVLLVM 478 (549)
T ss_dssp CCSCCCCCTTCCEEECTTSC-CSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSS-CCSSCCC-GGGCTTCCEE
T ss_pred CChhhcccccccEEECCCCC-cccccchhcCCceEEECCCCChhhhcccCChhcEEECCCC-ccCcCCC-cccCccCCEE
Confidence 21122345566666665532 22221100 0001125788888888887 6777775 4567888888
Q ss_pred EecCch
Q 001993 944 LIYYSR 949 (985)
Q Consensus 944 ~i~~c~ 949 (985)
++++|.
T Consensus 479 ~Ls~N~ 484 (549)
T 2z81_A 479 KISRNQ 484 (549)
T ss_dssp ECCSSC
T ss_pred ecCCCc
Confidence 888874
No 32
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.81 E-value=2e-19 Score=223.94 Aligned_cols=133 Identities=23% Similarity=0.243 Sum_probs=106.7
Q ss_pred CCCCceEEEccCcCCcchhhhHHHhhccCCcceeecCCC---CCCC-CcccccCCCCCeEecCCCCCcccc-chhhcCCC
Q 001993 575 DETKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGLP---VGQI-PKGIKKLIHLRYLALGENPWIKEL-PEALCELC 649 (985)
Q Consensus 575 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~---~~~l-p~~i~~l~~Lr~L~L~~~~~i~~l-P~~i~~L~ 649 (985)
-.+++++|+++++.. ....+..|.++++|++|+++. ...+ |..++++++|++|+|++|. +..+ |..++.|+
T Consensus 22 lp~~l~~LdLs~N~i---~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~-l~~~~p~~~~~l~ 97 (844)
T 3j0a_A 22 VLNTTERLLLSFNYI---RTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK-IYFLHPDAFQGLF 97 (844)
T ss_dssp SCTTCCEEEEESCCC---CEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC-CCEECTTSSCSCS
T ss_pred CCCCcCEEECCCCcC---CccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc-CcccCHhHccCCc
Confidence 457999999999864 333456689999999999993 3445 7789999999999999999 6665 88999999
Q ss_pred CCcEeeccCcccccccchh--hhhccccceeecccccccccccCCCcCCCCCCCCccCceEecCC
Q 001993 650 NLQTLDVSLCHYLKRLPER--IGQLINLRHLMNSKEEWSRLSYMPRGMERLTGLRTLGAFVASGG 712 (985)
Q Consensus 650 ~L~~L~l~~~~~l~~lP~~--i~~L~~L~~L~l~~n~~~~l~~~p~~i~~L~~L~~L~~~~~~~~ 712 (985)
+|++|+|++|.....+|.. +.+|++|++|++++|....+ ..+..++++++|++|++..+...
T Consensus 98 ~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~-~~~~~~~~L~~L~~L~Ls~N~i~ 161 (844)
T 3j0a_A 98 HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSL-YLHPSFGKLNSLKSIDFSSNQIF 161 (844)
T ss_dssp SCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCC-CCCGGGGTCSSCCEEEEESSCCC
T ss_pred ccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccccc-ccchhHhhCCCCCEEECCCCcCC
Confidence 9999999999844446665 89999999999997655321 12356899999999998876543
No 33
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.81 E-value=3.1e-19 Score=210.31 Aligned_cols=358 Identities=14% Similarity=0.087 Sum_probs=216.1
Q ss_pred EEEEEEcCCCCCccCCCccccCCCCceEEEccCcCCcchhhhHHHhhccCCcceeecCC--CCCCC-CcccccCCCCCeE
Q 001993 554 RHLMITGETRSEMVPFPSMVYDETKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL--PVGQI-PKGIKKLIHLRYL 630 (985)
Q Consensus 554 r~l~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~--~~~~l-p~~i~~l~~Lr~L 630 (985)
+.+.+.++.+. .+|..+. ++|+.|+++++.. ....+..|.++++|++|+++ .+..+ |..++.+++|++|
T Consensus 3 ~~l~ls~n~l~---~ip~~~~--~~L~~L~Ls~n~i---~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 74 (520)
T 2z7x_B 3 FLVDRSKNGLI---HVPKDLS--QKTTILNISQNYI---SELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYL 74 (520)
T ss_dssp CEEECTTSCCS---SCCCSCC--TTCSEEECCSSCC---CCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEE
T ss_pred ceEecCCCCcc---ccccccc--ccccEEECCCCcc---cccChhhccccccccEEecCCCccCCcChHHhhcccCCCEE
Confidence 45667777663 3455444 8999999999974 34455678999999999999 56666 7789999999999
Q ss_pred ecCCCCCccccchhhcCCCCCcEeeccCcccccc--cchhhhhccccceeecccccccccccCCCcCCCCCCC--CccCc
Q 001993 631 ALGENPWIKELPEALCELCNLQTLDVSLCHYLKR--LPERIGQLINLRHLMNSKEEWSRLSYMPRGMERLTGL--RTLGA 706 (985)
Q Consensus 631 ~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~--lP~~i~~L~~L~~L~l~~n~~~~l~~~p~~i~~L~~L--~~L~~ 706 (985)
+|++|. +..+|.. .+++|++|++++|. +.. +|..++.+++|++|++++|.... ..++.+++| +.|++
T Consensus 75 ~Ls~N~-l~~lp~~--~l~~L~~L~L~~N~-l~~~~~p~~~~~l~~L~~L~L~~n~l~~-----~~~~~l~~L~L~~L~l 145 (520)
T 2z7x_B 75 DLSHNK-LVKISCH--PTVNLKHLDLSFNA-FDALPICKEFGNMSQLKFLGLSTTHLEK-----SSVLPIAHLNISKVLL 145 (520)
T ss_dssp ECCSSC-CCEEECC--CCCCCSEEECCSSC-CSSCCCCGGGGGCTTCCEEEEEESSCCG-----GGGGGGTTSCEEEEEE
T ss_pred ecCCCc-eeecCcc--ccCCccEEeccCCc-cccccchhhhccCCcceEEEecCcccch-----hhccccccceeeEEEe
Confidence 999998 8999987 89999999999998 554 67899999999999999665432 346677777 99988
Q ss_pred eEecCCCcccccCCchhhh-----------------------ccccCcceeeecccccccCCCCcchhhhccccccc---
Q 001993 707 FVASGGKSSKACSSLKSLN-----------------------KLKHLEGSLTLRGLGNERDLGDDNDDEKVDLKSKM--- 760 (985)
Q Consensus 707 ~~~~~~~~~~~~~~l~~L~-----------------------~L~~L~~~L~i~~l~~~~~~~~~~~~~~~~l~~~~--- 760 (985)
..+...........+..+. .++.|+ .+.+........+. ........+..++
T Consensus 146 ~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~-~L~l~~n~~~~~~~-~~~~~~~~l~~l~~L~ 223 (520)
T 2z7x_B 146 VLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLE-LSNIKCVLEDNKCS-YFLSILAKLQTNPKLS 223 (520)
T ss_dssp EECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEE-ECCEEECCSTTTTH-HHHHHHHGGGGCTTCC
T ss_pred ecccccccccccccccccccceEEEEeccCcchhhhhhhhhhccccee-eccccccccccccc-eeecchhhhccccchh
Confidence 8765511001111233322 111111 11111100000000 0000001223333
Q ss_pred ------------------------ccccEEEEEcCCCCcchhHhhhcCC-----CCCCCCCeEEEeeccCCCCCCCC-hh
Q 001993 761 ------------------------KLVDLHLRFDSTTKTKDHRVVLECL-----QPPSSLEKLGIYGYAGDTISPTS-DW 810 (985)
Q Consensus 761 ------------------------~L~~L~l~~~~~~~~~~~~~~~~~l-----~~~~~L~~L~l~~~~~~~~~~~p-~~ 810 (985)
+|+.|+++.+. ....++..+ ..+++|+.++++++.. .+ | .+
T Consensus 224 ~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~-----l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~---p~~~ 294 (520)
T 2z7x_B 224 NLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVK-----LQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GF---PQSY 294 (520)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEE-----EESCCCCCCCCCCSCCCCEEEEEEEEECCC-CS---CTHH
T ss_pred hccccccccCHHHHHHHHHHhhhCcccEEEeeccc-----ccCccccchhhcccccCceeEeccccccce-ec---chhh
Confidence 34444444332 000112222 3333344444433332 22 2 11
Q ss_pred h-------------------------hccccccEEeEeccCCCCcCC-CCCCCCccceeeccCCCCceEe---CCcccCC
Q 001993 811 M-------------------------LSLAKLRVLTLRFCNECECLP-PLGKLPCLETLVLEGMSSVKRL---GNGFLGI 861 (985)
Q Consensus 811 ~-------------------------~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~l---~~~~~~~ 861 (985)
+ ..+++|+.|++++|.....+| .++.+++|+.|+|++|. +..+ +..+...
T Consensus 295 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~l 373 (520)
T 2z7x_B 295 IYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ-LKELSKIAEMTTQM 373 (520)
T ss_dssp HHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSC-CCBHHHHHHHHTTC
T ss_pred hhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCc-cCccccchHHHhhC
Confidence 1 456778888888875544344 47788888888888765 4432 2223333
Q ss_pred chhhhhhhhhhhccccccc--CCCCCccceeeccccccccccccccccCccccc-ccccceeecccccCCCCCCCCCCCC
Q 001993 862 AEDHQARADQAETASSIIR--DTAFPRLETLEFLDMEKWEEWDDCEIAGGKTIM-PRLRHLSICWSPELKALPDYILGST 938 (985)
Q Consensus 862 ~~~~~~~~~~~~~~~~~~~--~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~l-p~L~~L~i~~c~~L~~lp~~~~~l~ 938 (985)
..+..+.++.+.....++. ...+++|++|+++++. +..... ..+ ++|+.|++++| .++.+|..+..++
T Consensus 374 ~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~-------~~l~~~L~~L~Ls~N-~l~~ip~~~~~l~ 444 (520)
T 2z7x_B 374 KSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNI-LTDTIF-------RCLPPRIKVLDLHSN-KIKSIPKQVVKLE 444 (520)
T ss_dssp TTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSC-CCGGGG-------GSCCTTCCEEECCSS-CCCCCCGGGGGCT
T ss_pred CCCCEEECCCCcCCcccccchhccCccCCEEECcCCC-CCcchh-------hhhcccCCEEECCCC-cccccchhhhcCC
Confidence 3444444555444432221 2456778888887753 222111 123 79999999998 6888998788999
Q ss_pred CcCeEEecCch
Q 001993 939 SLDKLLIYYSR 949 (985)
Q Consensus 939 ~L~~L~i~~c~ 949 (985)
+|+.|++++|.
T Consensus 445 ~L~~L~L~~N~ 455 (520)
T 2z7x_B 445 ALQELNVASNQ 455 (520)
T ss_dssp TCCEEECCSSC
T ss_pred CCCEEECCCCc
Confidence 99999999995
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.80 E-value=3e-19 Score=205.20 Aligned_cols=310 Identities=17% Similarity=0.123 Sum_probs=217.7
Q ss_pred ccccCCCCceEEEccCcCCcchhhhHHHhhccCCcceeecCC--CCCCCCcccccCCCCCeEecCCCCCccccchhhcCC
Q 001993 571 SMVYDETKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL--PVGQIPKGIKKLIHLRYLALGENPWIKELPEALCEL 648 (985)
Q Consensus 571 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~--~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lP~~i~~L 648 (985)
..+.++++|++|+++++... . ++ .+..++.|++|+++ .+..+| ++.+++|++|++++|. +..+| ++.+
T Consensus 36 ~~~~~l~~L~~L~Ls~n~l~---~-~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~-l~~~~--~~~l 105 (457)
T 3bz5_A 36 ISEEQLATLTSLDCHNSSIT---D-MT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNK-LTNLD--VTPL 105 (457)
T ss_dssp EEHHHHTTCCEEECCSSCCC---C-CT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSC-CSCCC--CTTC
T ss_pred cChhHcCCCCEEEccCCCcc---c-Ch-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCC-Cceee--cCCC
Confidence 35567899999999998643 2 23 48899999999999 667776 8999999999999998 88886 8999
Q ss_pred CCCcEeeccCcccccccchhhhhccccceeecccccccccccCCCcCCCCCCCCccCceEecCCCcccccCCchhhhccc
Q 001993 649 CNLQTLDVSLCHYLKRLPERIGQLINLRHLMNSKEEWSRLSYMPRGMERLTGLRTLGAFVASGGKSSKACSSLKSLNKLK 728 (985)
Q Consensus 649 ~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~n~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~ 728 (985)
++|++|++++|. +..+| ++.+++|++|++++|.. ..+| ++.+++|+.|++..+.... .. .+..+++|+
T Consensus 106 ~~L~~L~L~~N~-l~~l~--~~~l~~L~~L~l~~N~l---~~l~--l~~l~~L~~L~l~~n~~~~---~~-~~~~l~~L~ 173 (457)
T 3bz5_A 106 TKLTYLNCDTNK-LTKLD--VSQNPLLTYLNCARNTL---TEID--VSHNTQLTELDCHLNKKIT---KL-DVTPQTQLT 173 (457)
T ss_dssp TTCCEEECCSSC-CSCCC--CTTCTTCCEEECTTSCC---SCCC--CTTCTTCCEEECTTCSCCC---CC-CCTTCTTCC
T ss_pred CcCCEEECCCCc-CCeec--CCCCCcCCEEECCCCcc---ceec--cccCCcCCEEECCCCCccc---cc-ccccCCcCC
Confidence 999999999998 77786 89999999999996655 3443 8889999999886553322 11 244444444
Q ss_pred cCcceeeecccccccCCCCcchhhhcccccccccccEEEEEcCCCCcchhHhhhcCCCCCCCCCeEEEeeccCCCCCCCC
Q 001993 729 HLEGSLTLRGLGNERDLGDDNDDEKVDLKSKMKLVDLHLRFDSTTKTKDHRVVLECLQPPSSLEKLGIYGYAGDTISPTS 808 (985)
Q Consensus 729 ~L~~~L~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p 808 (985)
.|.+... .+.. ..+..+++|+.|.++.+.-.. + .+..+++|+.|++++|....+ |
T Consensus 174 ----~L~ls~n-~l~~---------l~l~~l~~L~~L~l~~N~l~~------~--~l~~l~~L~~L~Ls~N~l~~i---p 228 (457)
T 3bz5_A 174 ----TLDCSFN-KITE---------LDVSQNKLLNRLNCDTNNITK------L--DLNQNIQLTFLDCSSNKLTEI---D 228 (457)
T ss_dssp ----EEECCSS-CCCC---------CCCTTCTTCCEEECCSSCCSC------C--CCTTCTTCSEEECCSSCCSCC---C
T ss_pred ----EEECCCC-ccce---------eccccCCCCCEEECcCCcCCe------e--ccccCCCCCEEECcCCccccc---C
Confidence 4444321 1111 125677889999998776211 1 366778999999999988776 6
Q ss_pred hhhhccccccEEeEeccCCCCcCCCCCCCCccceeeccCCCCceEeCCcccCCchhhhhhhhhhhcccccccCCCCCccc
Q 001993 809 DWMLSLAKLRVLTLRFCNECECLPPLGKLPCLETLVLEGMSSVKRLGNGFLGIAEDHQARADQAETASSIIRDTAFPRLE 888 (985)
Q Consensus 809 ~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fp~L~ 888 (985)
+..+++|+.|++++|. ++.+| .+.+++|+.|+++++. ++.+.-. .+...... ....+++|+
T Consensus 229 --~~~l~~L~~L~l~~N~-l~~~~-~~~l~~L~~L~l~~n~-L~~L~l~-------------~n~~~~~~-~~~~l~~L~ 289 (457)
T 3bz5_A 229 --VTPLTQLTYFDCSVNP-LTELD-VSTLSKLTTLHCIQTD-LLEIDLT-------------HNTQLIYF-QAEGCRKIK 289 (457)
T ss_dssp --CTTCTTCSEEECCSSC-CSCCC-CTTCTTCCEEECTTCC-CSCCCCT-------------TCTTCCEE-ECTTCTTCC
T ss_pred --ccccCCCCEEEeeCCc-CCCcC-HHHCCCCCEEeccCCC-CCEEECC-------------CCccCCcc-cccccccCC
Confidence 6789999999999995 44444 5667777777766532 3333211 00101111 124689999
Q ss_pred eeeccccccccccccccc---cCcccccccccceeecccccCCCCCCCCCCCCCcCeEEecCch
Q 001993 889 TLEFLDMEKWEEWDDCEI---AGGKTIMPRLRHLSICWSPELKALPDYILGSTSLDKLLIYYSR 949 (985)
Q Consensus 889 ~L~l~~~~~L~~~~~~~~---~~~~~~lp~L~~L~i~~c~~L~~lp~~~~~l~~L~~L~i~~c~ 949 (985)
.|+++++..+..++.... .-....+|+|+.|++++| .++.++ +.++++|+.|+++++.
T Consensus 290 ~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N-~l~~l~--l~~l~~L~~L~l~~N~ 350 (457)
T 3bz5_A 290 ELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNT-ELTELD--VSHNTKLKSLSCVNAH 350 (457)
T ss_dssp CCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTC-CCSCCC--CTTCTTCSEEECCSSC
T ss_pred EEECCCCcccceeccCCCcceEechhhcccCCEEECCCC-cccccc--cccCCcCcEEECCCCC
Confidence 999999876665543100 002335678888888776 566664 7789999999998874
No 35
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.80 E-value=7.4e-19 Score=201.96 Aligned_cols=305 Identities=16% Similarity=0.139 Sum_probs=216.9
Q ss_pred CCeEEEEEEcCCCCCccCCCccccCCCCceEEEccCcCCcchhhhHHHhhccCCcceeecCC--CCCCCCcccccCCCCC
Q 001993 551 WKARHLMITGETRSEMVPFPSMVYDETKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL--PVGQIPKGIKKLIHLR 628 (985)
Q Consensus 551 ~~~r~l~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~--~~~~lp~~i~~l~~Lr 628 (985)
..++++.+.++.+.. .+ .+..+++|+.|+++++.... ++ +..+++|++|+++ .+..+| ++.+++|+
T Consensus 42 ~~L~~L~Ls~n~l~~---~~-~l~~l~~L~~L~Ls~n~l~~----~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~ 109 (457)
T 3bz5_A 42 ATLTSLDCHNSSITD---MT-GIEKLTGLTKLICTSNNITT----LD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLT 109 (457)
T ss_dssp TTCCEEECCSSCCCC---CT-TGGGCTTCSEEECCSSCCSC----CC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCC
T ss_pred CCCCEEEccCCCccc---Ch-hhcccCCCCEEEccCCcCCe----Ec--cccCCCCCEEECcCCCCceee--cCCCCcCC
Confidence 568899999888743 33 67889999999999997532 22 7899999999999 566665 89999999
Q ss_pred eEecCCCCCccccchhhcCCCCCcEeeccCcccccccchhhhhccccceeecccccccccccCCCcCCCCCCCCccCceE
Q 001993 629 YLALGENPWIKELPEALCELCNLQTLDVSLCHYLKRLPERIGQLINLRHLMNSKEEWSRLSYMPRGMERLTGLRTLGAFV 708 (985)
Q Consensus 629 ~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~n~~~~l~~~p~~i~~L~~L~~L~~~~ 708 (985)
+|++++|. +..+| ++.+++|++|++++|. +..+| ++.+++|++|++++|. .+..+ .++.+++|+.|++..
T Consensus 110 ~L~L~~N~-l~~l~--~~~l~~L~~L~l~~N~-l~~l~--l~~l~~L~~L~l~~n~--~~~~~--~~~~l~~L~~L~ls~ 179 (457)
T 3bz5_A 110 YLNCDTNK-LTKLD--VSQNPLLTYLNCARNT-LTEID--VSHNTQLTELDCHLNK--KITKL--DVTPQTQLTTLDCSF 179 (457)
T ss_dssp EEECCSSC-CSCCC--CTTCTTCCEEECTTSC-CSCCC--CTTCTTCCEEECTTCS--CCCCC--CCTTCTTCCEEECCS
T ss_pred EEECCCCc-CCeec--CCCCCcCCEEECCCCc-cceec--cccCCcCCEEECCCCC--ccccc--ccccCCcCCEEECCC
Confidence 99999998 88887 8999999999999998 77775 8899999999999543 33444 478899999999876
Q ss_pred ecCCCcccccCCchhhhccccCcceeeecccccccCCCCcchhhhcccccccccccEEEEEcCCCCcchhHhhhcCCCCC
Q 001993 709 ASGGKSSKACSSLKSLNKLKHLEGSLTLRGLGNERDLGDDNDDEKVDLKSKMKLVDLHLRFDSTTKTKDHRVVLECLQPP 788 (985)
Q Consensus 709 ~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~ 788 (985)
+..... .+..+++|+ .|.+... .+.. ..+..+++|+.|+++++.-. .++ +..+
T Consensus 180 n~l~~l-----~l~~l~~L~----~L~l~~N-~l~~---------~~l~~l~~L~~L~Ls~N~l~------~ip--~~~l 232 (457)
T 3bz5_A 180 NKITEL-----DVSQNKLLN----RLNCDTN-NITK---------LDLNQNIQLTFLDCSSNKLT------EID--VTPL 232 (457)
T ss_dssp SCCCCC-----CCTTCTTCC----EEECCSS-CCSC---------CCCTTCTTCSEEECCSSCCS------CCC--CTTC
T ss_pred Ccccee-----ccccCCCCC----EEECcCC-cCCe---------eccccCCCCCEEECcCCccc------ccC--cccc
Confidence 654431 134444444 3433321 1111 13667889999999887621 122 6678
Q ss_pred CCCCeEEEeeccCCCCCCCChhhhccc-------cccEEeEeccCCCCcCCCCCCCCccceeeccCCCCceEeCCcccCC
Q 001993 789 SSLEKLGIYGYAGDTISPTSDWMLSLA-------KLRVLTLRFCNECECLPPLGKLPCLETLVLEGMSSVKRLGNGFLGI 861 (985)
Q Consensus 789 ~~L~~L~l~~~~~~~~~~~p~~~~~l~-------~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~ 861 (985)
++|+.|++++|....+. +..+..+. +|+.|++++|.....+| .+.+++|+.|+|++|..++.++......
T Consensus 233 ~~L~~L~l~~N~l~~~~--~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~-~~~l~~L~~L~Ls~n~~l~~l~~~~~~L 309 (457)
T 3bz5_A 233 TQLTYFDCSVNPLTELD--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ-AEGCRKIKELDVTHNTQLYLLDCQAAGI 309 (457)
T ss_dssp TTCSEEECCSSCCSCCC--CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE-CTTCTTCCCCCCTTCTTCCEEECTTCCC
T ss_pred CCCCEEEeeCCcCCCcC--HHHCCCCCEEeccCCCCCEEECCCCccCCccc-ccccccCCEEECCCCcccceeccCCCcc
Confidence 99999999999877762 22222222 44555666665555554 5788999999999999888887532211
Q ss_pred chhhhhhhhhhhcccccccCCCCCccceeeccccccccccccccccCcccccccccceeecccccCCCCC
Q 001993 862 AEDHQARADQAETASSIIRDTAFPRLETLEFLDMEKWEEWDDCEIAGGKTIMPRLRHLSICWSPELKALP 931 (985)
Q Consensus 862 ~~~~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~lp~L~~L~i~~c~~L~~lp 931 (985)
.. ......|+|++|+++++ +++.++ ...+++|+.|+++++ .++.+|
T Consensus 310 ~~---------------L~l~~~~~L~~L~L~~N-~l~~l~-------l~~l~~L~~L~l~~N-~l~~l~ 355 (457)
T 3bz5_A 310 TE---------------LDLSQNPKLVYLYLNNT-ELTELD-------VSHNTKLKSLSCVNA-HIQDFS 355 (457)
T ss_dssp SC---------------CCCTTCTTCCEEECTTC-CCSCCC-------CTTCTTCSEEECCSS-CCCBCT
T ss_pred eE---------------echhhcccCCEEECCCC-cccccc-------cccCCcCcEEECCCC-CCCCcc
Confidence 11 01245678888888773 344432 347899999999887 555543
No 36
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.80 E-value=1.1e-18 Score=207.49 Aligned_cols=342 Identities=17% Similarity=0.116 Sum_probs=218.8
Q ss_pred CCCceEEEccCcCCcchhhhHHHhhccCCcceeecCC--CCCCCC-cccccCCCCCeEecCCCCCcccc-chhhcCCCCC
Q 001993 576 ETKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL--PVGQIP-KGIKKLIHLRYLALGENPWIKEL-PEALCELCNL 651 (985)
Q Consensus 576 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~--~~~~lp-~~i~~l~~Lr~L~L~~~~~i~~l-P~~i~~L~~L 651 (985)
+...++++++++... . +|..+ .+.|++|+++ .+..+| ..+..+++|++|+|++|. +..+ |..+..+++|
T Consensus 30 ~~~~~~l~ls~~~L~---~-ip~~~--~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L 102 (562)
T 3a79_B 30 NELESMVDYSNRNLT---H-VPKDL--PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNR-IRSLDFHVFLFNQDL 102 (562)
T ss_dssp ---CCEEECTTSCCC---S-CCTTS--CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCC-CCEECTTTTTTCTTC
T ss_pred cCCCcEEEcCCCCCc---c-CCCCC--CCCcCEEECCCCCccccChhhhccCCCccEEECCCCC-CCcCCHHHhCCCCCC
Confidence 444589999988642 2 23222 2789999999 677776 589999999999999998 7777 6779999999
Q ss_pred cEeeccCcccccccchhhhhccccceeecccccccccccCCCcCCCCCCCCccCceEecCCCcccccCCchhhhcc--cc
Q 001993 652 QTLDVSLCHYLKRLPERIGQLINLRHLMNSKEEWSRLSYMPRGMERLTGLRTLGAFVASGGKSSKACSSLKSLNKL--KH 729 (985)
Q Consensus 652 ~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~n~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L--~~ 729 (985)
++|++++|. +..+|.. .+++|++|++++|....+ .+|..++++++|++|++..+.... ..+..+.+| +.
T Consensus 103 ~~L~Ls~N~-l~~lp~~--~l~~L~~L~Ls~N~l~~l-~~p~~~~~l~~L~~L~L~~n~l~~-----~~~~~l~~L~L~~ 173 (562)
T 3a79_B 103 EYLDVSHNR-LQNISCC--PMASLRHLDLSFNDFDVL-PVCKEFGNLTKLTFLGLSAAKFRQ-----LDLLPVAHLHLSC 173 (562)
T ss_dssp CEEECTTSC-CCEECSC--CCTTCSEEECCSSCCSBC-CCCGGGGGCTTCCEEEEECSBCCT-----TTTGGGTTSCEEE
T ss_pred CEEECCCCc-CCccCcc--ccccCCEEECCCCCcccc-CchHhhcccCcccEEecCCCcccc-----CchhhhhhceeeE
Confidence 999999998 8899987 899999999997655321 245789999999999998765443 134555555 43
Q ss_pred Ccceeeeccc--ccccC--CCC---------------cchhhhcccccccccccEEEEEcCCC-----------------
Q 001993 730 LEGSLTLRGL--GNERD--LGD---------------DNDDEKVDLKSKMKLVDLHLRFDSTT----------------- 773 (985)
Q Consensus 730 L~~~L~i~~l--~~~~~--~~~---------------~~~~~~~~l~~~~~L~~L~l~~~~~~----------------- 773 (985)
| .+..+.+ ..... +.. ........+..+++|+.|+++++...
T Consensus 174 L--~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L 251 (562)
T 3a79_B 174 I--LLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTL 251 (562)
T ss_dssp E--EEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSC
T ss_pred E--EeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcc
Confidence 3 2332222 11000 000 00000112233455566665543200
Q ss_pred ----------CcchhHhhhcCCCCCCCCCeEEEeeccCC-CCCCCChhh-------------------------------
Q 001993 774 ----------KTKDHRVVLECLQPPSSLEKLGIYGYAGD-TISPTSDWM------------------------------- 811 (985)
Q Consensus 774 ----------~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~p~~~------------------------------- 811 (985)
........+..+ ...+|+.|++++|... .+ |.++
T Consensus 252 ~~L~L~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~i---p~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~ 327 (562)
T 3a79_B 252 LNVTLQHIETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERI---DREEFTYSETALKSLMIEHVKNQVFLFSKEALYSV 327 (562)
T ss_dssp EEEEEEEEEECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCC---CCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHH
T ss_pred eEEEecCCcCcHHHHHHHHHhh-hcccccEEEEeccEeeccc---cchhhhcccccchheehhhcccceeecChhhhhhh
Confidence 000000111111 1125666666665533 22 2221
Q ss_pred ----------------------hccccccEEeEeccCCCCcCC-CCCCCCccceeeccCCCCceEeC---CcccCCchhh
Q 001993 812 ----------------------LSLAKLRVLTLRFCNECECLP-PLGKLPCLETLVLEGMSSVKRLG---NGFLGIAEDH 865 (985)
Q Consensus 812 ----------------------~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~l~---~~~~~~~~~~ 865 (985)
..+++|+.|++++|...+.+| .++.+++|+.|+|+++. ++.++ ..+.....+.
T Consensus 328 ~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~l~~L~ 406 (562)
T 3a79_B 328 FAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG-LKNFFKVALMTKNMSSLE 406 (562)
T ss_dssp HHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSC-CCBTTHHHHTTTTCTTCC
T ss_pred hccCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCC-cCCcccchhhhcCCCCCC
Confidence 567899999999996655454 58899999999999965 65543 2334444455
Q ss_pred hhhhhhhhccccccc--CCCCCccceeeccccccccccccccccCccccc-ccccceeecccccCCCCCCCCCCCCCcCe
Q 001993 866 QARADQAETASSIIR--DTAFPRLETLEFLDMEKWEEWDDCEIAGGKTIM-PRLRHLSICWSPELKALPDYILGSTSLDK 942 (985)
Q Consensus 866 ~~~~~~~~~~~~~~~--~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~l-p~L~~L~i~~c~~L~~lp~~~~~l~~L~~ 942 (985)
.+.++.+......+. ...+++|++|+++++. +..... ..+ ++|+.|++++| .++.+|..+.++++|+.
T Consensus 407 ~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~-------~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~ 477 (562)
T 3a79_B 407 TLDVSLNSLNSHAYDRTCAWAESILVLNLSSNM-LTGSVF-------RCLPPKVKVLDLHNN-RIMSIPKDVTHLQALQE 477 (562)
T ss_dssp EEECTTSCCBSCCSSCCCCCCTTCCEEECCSSC-CCGGGG-------SSCCTTCSEEECCSS-CCCCCCTTTTSSCCCSE
T ss_pred EEECCCCcCCCccChhhhcCcccCCEEECCCCC-CCcchh-------hhhcCcCCEEECCCC-cCcccChhhcCCCCCCE
Confidence 555555555442221 3467889999998854 332211 134 69999999998 78899988889999999
Q ss_pred EEecCch
Q 001993 943 LLIYYSR 949 (985)
Q Consensus 943 L~i~~c~ 949 (985)
|++++|.
T Consensus 478 L~L~~N~ 484 (562)
T 3a79_B 478 LNVASNQ 484 (562)
T ss_dssp EECCSSC
T ss_pred EECCCCC
Confidence 9999985
No 37
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.80 E-value=6.2e-19 Score=215.07 Aligned_cols=257 Identities=21% Similarity=0.147 Sum_probs=163.4
Q ss_pred CCccccCCCCceEEEccCcCCcchhhhHHHhhccCCcceeecCC--CCCCC-CcccccCCCCCeEecCCCCCccccch-h
Q 001993 569 FPSMVYDETKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL--PVGQI-PKGIKKLIHLRYLALGENPWIKELPE-A 644 (985)
Q Consensus 569 ~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~--~~~~l-p~~i~~l~~Lr~L~L~~~~~i~~lP~-~ 644 (985)
+|..+. +++++|+++++.. ....+..|.++++|++|+++ .+..+ |..++++++|++|+|++|. +..+|. .
T Consensus 19 ip~~~~--~~l~~L~Ls~n~l---~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~ 92 (680)
T 1ziw_A 19 VPDDLP--TNITVLNLTHNQL---RRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE-LSQLSDKT 92 (680)
T ss_dssp CCSCSC--TTCSEEECCSSCC---CCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC-CCCCCTTT
T ss_pred cccccC--CCCcEEECCCCCC---CCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc-cCccChhh
Confidence 444433 7899999999864 33345568999999999998 45555 6778999999999999998 889987 5
Q ss_pred hcCCCCCcEeeccCcccccccc-hhhhhccccceeecccccccccccCCCcCCCCCCCCccCceEecCCCcccccCCchh
Q 001993 645 LCELCNLQTLDVSLCHYLKRLP-ERIGQLINLRHLMNSKEEWSRLSYMPRGMERLTGLRTLGAFVASGGKSSKACSSLKS 723 (985)
Q Consensus 645 i~~L~~L~~L~l~~~~~l~~lP-~~i~~L~~L~~L~l~~n~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~ 723 (985)
++.+++|++|++++|. +..+| ..++++++|++|++++|... ...|..++++++|++|++..+.........-....
T Consensus 93 ~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 169 (680)
T 1ziw_A 93 FAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLS--STKLGTQVQLENLQELLLSNNKIQALKSEELDIFA 169 (680)
T ss_dssp TTTCTTCSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSSCCS--CCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGT
T ss_pred hccCCCCCEEECCCCc-cCccChhHccccCCCCEEECCCCccc--ccCchhhcccccCCEEEccCCcccccCHHHhhccc
Confidence 9999999999999998 66666 57899999999999966543 33456789999999999876544331111000112
Q ss_pred hhccccCcceeeecccccccCCCCcchhhhcccccccccccEEEEEcCCCCcchhHhhhcCCCCCCCCCeEEEeeccCCC
Q 001993 724 LNKLKHLEGSLTLRGLGNERDLGDDNDDEKVDLKSKMKLVDLHLRFDSTTKTKDHRVVLECLQPPSSLEKLGIYGYAGDT 803 (985)
Q Consensus 724 L~~L~~L~~~L~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 803 (985)
+.+|+ .|.+.... +.. .....+..+.+|+.|.+..+... ......+...+ ..++|+.|++++|....
T Consensus 170 ~~~L~----~L~L~~n~-l~~------~~~~~~~~l~~L~~L~l~~~~l~-~~~~~~~~~~l-~~~~L~~L~L~~n~l~~ 236 (680)
T 1ziw_A 170 NSSLK----KLELSSNQ-IKE------FSPGCFHAIGRLFGLFLNNVQLG-PSLTEKLCLEL-ANTSIRNLSLSNSQLST 236 (680)
T ss_dssp TCEES----EEECTTCC-CCC------BCTTGGGGSSEECEEECTTCCCH-HHHHHHHHHHH-TTSCCCEEECTTSCCCE
T ss_pred ccccc----EEECCCCc-ccc------cChhhhhhhhhhhhhhccccccC-hhhHHHHHHHh-hhccccEEEccCCcccc
Confidence 23444 34443211 111 11123445566666666433200 00001111111 23567777777766554
Q ss_pred CCCCChhhhcccc--ccEEeEeccCCCCcCC-CCCCCCccceeeccCCC
Q 001993 804 ISPTSDWMLSLAK--LRVLTLRFCNECECLP-PLGKLPCLETLVLEGMS 849 (985)
Q Consensus 804 ~~~~p~~~~~l~~--L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~ 849 (985)
.. |.++..++. |+.|+|++|......| .++.+++|++|+|+++.
T Consensus 237 ~~--~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 283 (680)
T 1ziw_A 237 TS--NTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN 283 (680)
T ss_dssp EC--TTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCC
T ss_pred cC--hhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCc
Confidence 43 555655544 7777777774333222 36677777777777654
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.79 E-value=1.4e-19 Score=204.74 Aligned_cols=297 Identities=15% Similarity=0.140 Sum_probs=217.2
Q ss_pred CCeEEEEEEcCCCCCccCCCc-cccCCCCceEEEccCcCCcchhhhHHHhhccCCcceeecCC--CCCCCC-cccccCCC
Q 001993 551 WKARHLMITGETRSEMVPFPS-MVYDETKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL--PVGQIP-KGIKKLIH 626 (985)
Q Consensus 551 ~~~r~l~l~~~~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~--~~~~lp-~~i~~l~~ 626 (985)
..++.+.+.++.... .+. .+..+++|++|.+.++.. ....+..|.++++|++|+++ .+..+| ..++.+++
T Consensus 45 ~~l~~l~l~~~~l~~---l~~~~~~~l~~L~~L~L~~n~i---~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 118 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRK---LPAALLDSFRQVELLNLNDLQI---EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 118 (390)
T ss_dssp CCCSEEEEESCEESE---ECTHHHHHCCCCSEEECTTSCC---CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCceEEEecCCchhh---CChhHhcccccCcEEECCCCcc---cccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCC
Confidence 567889998887632 333 357789999999999864 33344568999999999998 566664 55899999
Q ss_pred CCeEecCCCCCccccchhh-cCCCCCcEeeccCccccccc-chhhhhccccceeecccccccccccCCCcCCCCCCCCcc
Q 001993 627 LRYLALGENPWIKELPEAL-CELCNLQTLDVSLCHYLKRL-PERIGQLINLRHLMNSKEEWSRLSYMPRGMERLTGLRTL 704 (985)
Q Consensus 627 Lr~L~L~~~~~i~~lP~~i-~~L~~L~~L~l~~~~~l~~l-P~~i~~L~~L~~L~l~~n~~~~l~~~p~~i~~L~~L~~L 704 (985)
|++|++++|. +..+|..+ ..+++|++|++++|. +..+ |..+..+++|++|++++|... .+ .++.+++|+.|
T Consensus 119 L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~---~~--~~~~l~~L~~L 191 (390)
T 3o6n_A 119 LTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLT---HV--DLSLIPSLFHA 191 (390)
T ss_dssp CCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSSCCS---BC--CGGGCTTCSEE
T ss_pred CCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCCcCC---cc--cccccccccee
Confidence 9999999998 99999874 899999999999998 6555 456899999999999976553 33 35677888888
Q ss_pred CceEecCCCcccccCCchhhhccccCcceeeecc--cccccCCCCcchhhhcccccccccccEEEEEcCCCCcchhHhhh
Q 001993 705 GAFVASGGKSSKACSSLKSLNKLKHLEGSLTLRG--LGNERDLGDDNDDEKVDLKSKMKLVDLHLRFDSTTKTKDHRVVL 782 (985)
Q Consensus 705 ~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~--l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 782 (985)
++..+... .+.....|+ .|.+.+ +..+ .....++|+.|+++.+.... .
T Consensus 192 ~l~~n~l~----------~~~~~~~L~-~L~l~~n~l~~~------------~~~~~~~L~~L~l~~n~l~~-------~ 241 (390)
T 3o6n_A 192 NVSYNLLS----------TLAIPIAVE-ELDASHNSINVV------------RGPVNVELTILKLQHNNLTD-------T 241 (390)
T ss_dssp ECCSSCCS----------EEECCSSCS-EEECCSSCCCEE------------ECCCCSSCCEEECCSSCCCC-------C
T ss_pred eccccccc----------ccCCCCcce-EEECCCCeeeec------------cccccccccEEECCCCCCcc-------c
Confidence 77543222 222222232 333332 1111 11223689999998776211 1
Q ss_pred cCCCCCCCCCeEEEeeccCCCCCCCChhhhccccccEEeEeccCCCCcCC-CCCCCCccceeeccCCCCceEeCCcccCC
Q 001993 783 ECLQPPSSLEKLGIYGYAGDTISPTSDWMLSLAKLRVLTLRFCNECECLP-PLGKLPCLETLVLEGMSSVKRLGNGFLGI 861 (985)
Q Consensus 783 ~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~l~~~~~~~ 861 (985)
..+..+++|+.|++++|...... |..+..+++|+.|+|++|. ++.+| ..+.+++|+.|+|++|. +..++..+
T Consensus 242 ~~l~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~--- 314 (390)
T 3o6n_A 242 AWLLNYPGLVEVDLSYNELEKIM--YHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNH-LLHVERNQ--- 314 (390)
T ss_dssp GGGGGCTTCSEEECCSSCCCEEE--SGGGTTCSSCCEEECCSSC-CCEEECSSSCCTTCCEEECCSSC-CCCCGGGH---
T ss_pred HHHcCCCCccEEECCCCcCCCcC--hhHccccccCCEEECCCCc-CcccCcccCCCCCCCEEECCCCc-ceecCccc---
Confidence 34566789999999999876653 7788899999999999995 44555 36689999999999975 65555432
Q ss_pred chhhhhhhhhhhcccccccCCCCCccceeeccccccccccccccccCcccccccccceeecccc
Q 001993 862 AEDHQARADQAETASSIIRDTAFPRLETLEFLDMEKWEEWDDCEIAGGKTIMPRLRHLSICWSP 925 (985)
Q Consensus 862 ~~~~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~lp~L~~L~i~~c~ 925 (985)
..+++|++|+++++. +..++ ...+++|+.|++++|+
T Consensus 315 --------------------~~l~~L~~L~L~~N~-i~~~~-------~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 315 --------------------PQFDRLENLYLDHNS-IVTLK-------LSTHHTLKNLTLSHND 350 (390)
T ss_dssp --------------------HHHTTCSEEECCSSC-CCCCC-------CCTTCCCSEEECCSSC
T ss_pred --------------------cccCcCCEEECCCCc-cceeC-------chhhccCCEEEcCCCC
Confidence 257899999999854 45443 3468999999999975
No 39
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.79 E-value=1.1e-18 Score=202.16 Aligned_cols=328 Identities=15% Similarity=0.134 Sum_probs=220.5
Q ss_pred CCceEEEccCcCCcchhhhHHHhhccCCcceeecCCC--CC-CC-CcccccCCCCCeEecCCCCCcccc-chhhcCCCCC
Q 001993 577 TKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGLP--VG-QI-PKGIKKLIHLRYLALGENPWIKEL-PEALCELCNL 651 (985)
Q Consensus 577 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~--~~-~l-p~~i~~l~~Lr~L~L~~~~~i~~l-P~~i~~L~~L 651 (985)
++|++|+++++.. ....+..|.++++|++|+++. +. .+ |..+..+++|++|+|++|. +..+ |..++++++|
T Consensus 30 ~~l~~L~Ls~n~i---~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L 105 (455)
T 3v47_A 30 AHVNYVDLSLNSI---AELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ-FLQLETGAFNGLANL 105 (455)
T ss_dssp TTCCEEECCSSCC---CEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT-TCEECTTTTTTCTTC
T ss_pred CccCEEEecCCcc---CcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCc-cCccChhhccCcccC
Confidence 7899999999864 333466789999999999993 32 44 5679999999999999999 6665 7889999999
Q ss_pred cEeeccCcccccccchh--hhhccccceeecccccccccccC-CCc-CCCCCCCCccCceEecCCCcccccCCchhh--h
Q 001993 652 QTLDVSLCHYLKRLPER--IGQLINLRHLMNSKEEWSRLSYM-PRG-MERLTGLRTLGAFVASGGKSSKACSSLKSL--N 725 (985)
Q Consensus 652 ~~L~l~~~~~l~~lP~~--i~~L~~L~~L~l~~n~~~~l~~~-p~~-i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L--~ 725 (985)
++|++++|......|.. +..+++|++|++++|.. ..+ |.. ++++++|++|++..+...... ...+..+ .
T Consensus 106 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l---~~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~l~~l~~~ 180 (455)
T 3v47_A 106 EVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNI---KKIQPASFFLNMRRFHVLDLTFNKVKSIC--EEDLLNFQGK 180 (455)
T ss_dssp CEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBC---CSCCCCGGGGGCTTCCEEECTTCCBSCCC--TTTSGGGTTC
T ss_pred CEEeCCCCCCCccccCcccccCcccCCEEECCCCcc---CccCcccccCCCCcccEEeCCCCcccccC--hhhhhccccc
Confidence 99999999833345555 88999999999996654 444 544 789999999998766544311 1123333 2
Q ss_pred ccccCcceeeeccc--ccccCCCCcchhhhcccccccccccEEEEEcCCCCcchhHhhhcCCCCCCCCCeEEEeeccCCC
Q 001993 726 KLKHLEGSLTLRGL--GNERDLGDDNDDEKVDLKSKMKLVDLHLRFDSTTKTKDHRVVLECLQPPSSLEKLGIYGYAGDT 803 (985)
Q Consensus 726 ~L~~L~~~L~i~~l--~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 803 (985)
+|. .+.+... ..+.... ........+..+++|+.|+++++... ......+.. .....+|+.|+++++....
T Consensus 181 ~L~----~L~l~~n~l~~~~~~~-~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~~~~-~~~~~~L~~L~l~~~~~~~ 253 (455)
T 3v47_A 181 HFT----LLRLSSITLQDMNEYW-LGWEKCGNPFKNTSITTLDLSGNGFK-ESMAKRFFD-AIAGTKIQSLILSNSYNMG 253 (455)
T ss_dssp EEE----EEECTTCBCTTCSTTC-TTHHHHCCTTTTCEEEEEECTTSCCC-HHHHHHHHH-HTTTCCEEEEECTTCTTTS
T ss_pred ccc----ccccccCcccccchhh-ccccccccccccceeeeEecCCCccc-ccchhhhhc-cccccceeeEeeccccccc
Confidence 333 3333222 1111100 00111122445578999998876511 111111212 2234789999998774322
Q ss_pred CC-------C-CChhhh--ccccccEEeEeccCCCCcCC-CCCCCCccceeeccCCCCceEeCCcccCCchhhhhhhhhh
Q 001993 804 IS-------P-TSDWML--SLAKLRVLTLRFCNECECLP-PLGKLPCLETLVLEGMSSVKRLGNGFLGIAEDHQARADQA 872 (985)
Q Consensus 804 ~~-------~-~p~~~~--~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~ 872 (985)
.. . .+..+. ..++|+.|++++|.....+| .++.+++|+.|+|++|. +..++...+
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~------------- 319 (455)
T 3v47_A 254 SSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE-INKIDDNAF------------- 319 (455)
T ss_dssp CCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTT-------------
T ss_pred cccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCc-ccccChhHh-------------
Confidence 10 0 011122 24689999999996655555 48899999999999976 555543221
Q ss_pred hcccccccCCCCCccceeeccccccccccccccccCcccccccccceeecccccCCCC-CCCCCCCCCcCeEEecCch
Q 001993 873 ETASSIIRDTAFPRLETLEFLDMEKWEEWDDCEIAGGKTIMPRLRHLSICWSPELKAL-PDYILGSTSLDKLLIYYSR 949 (985)
Q Consensus 873 ~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~lp~L~~L~i~~c~~L~~l-p~~~~~l~~L~~L~i~~c~ 949 (985)
..+++|++|+++++ .+..+... ....+++|+.|++++|. ++.+ |..+.++++|+.|++++|.
T Consensus 320 ---------~~l~~L~~L~Ls~N-~l~~~~~~----~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 382 (455)
T 3v47_A 320 ---------WGLTHLLKLNLSQN-FLGSIDSR----MFENLDKLEVLDLSYNH-IRALGDQSFLGLPNLKELALDTNQ 382 (455)
T ss_dssp ---------TTCTTCCEEECCSS-CCCEECGG----GGTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC
T ss_pred ---------cCcccCCEEECCCC-ccCCcChh----HhcCcccCCEEECCCCc-ccccChhhccccccccEEECCCCc
Confidence 35789999999985 44444321 34579999999999984 5554 7788899999999999985
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.78 E-value=2.4e-19 Score=214.30 Aligned_cols=298 Identities=15% Similarity=0.133 Sum_probs=214.8
Q ss_pred CCeEEEEEEcCCCCCccCCCccccCCCCceEEEccCcCCcchhhhHHHhhccCCcceeecCC--CCCCCCc-ccccCCCC
Q 001993 551 WKARHLMITGETRSEMVPFPSMVYDETKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL--PVGQIPK-GIKKLIHL 627 (985)
Q Consensus 551 ~~~r~l~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~--~~~~lp~-~i~~l~~L 627 (985)
...+.+.+.++...... +..+..+++|++|+++++.. ....+..|..+++|++|+++ .+..+|. .++.+++|
T Consensus 51 ~~l~~l~l~~~~l~~lp--~~~~~~l~~L~~L~L~~n~l---~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 125 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLP--AALLDSFRQVELLNLNDLQI---EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 125 (597)
T ss_dssp CCCSEEEESSCEESEEC--THHHHHCCCCSEEECTTSCC---CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCceEEEeeCCCCCCcC--HHHHccCCCCcEEECCCCCC---CCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCC
Confidence 45677888777663211 33456789999999999864 33345568999999999998 5666654 57999999
Q ss_pred CeEecCCCCCccccchh-hcCCCCCcEeeccCccccccc-chhhhhccccceeecccccccccccCCCcCCCCCCCCccC
Q 001993 628 RYLALGENPWIKELPEA-LCELCNLQTLDVSLCHYLKRL-PERIGQLINLRHLMNSKEEWSRLSYMPRGMERLTGLRTLG 705 (985)
Q Consensus 628 r~L~L~~~~~i~~lP~~-i~~L~~L~~L~l~~~~~l~~l-P~~i~~L~~L~~L~l~~n~~~~l~~~p~~i~~L~~L~~L~ 705 (985)
++|+|++|. +..+|.. ++.+++|++|+|++|. +..+ |..+..+++|++|++++|... .+| ++.+++|+.|+
T Consensus 126 ~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~---~~~--~~~l~~L~~L~ 198 (597)
T 3oja_B 126 TVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLT---HVD--LSLIPSLFHAN 198 (597)
T ss_dssp CEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECTTSCCS---BCC--GGGCTTCSEEE
T ss_pred CEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCc-CCCCChhhhhcCCcCcEEECcCCCCC---CcC--hhhhhhhhhhh
Confidence 999999998 8899887 4899999999999998 5555 456899999999999976543 333 56678888887
Q ss_pred ceEecCCCcccccCCchhhhccccCcceeeecc--cccccCCCCcchhhhcccccccccccEEEEEcCCCCcchhHhhhc
Q 001993 706 AFVASGGKSSKACSSLKSLNKLKHLEGSLTLRG--LGNERDLGDDNDDEKVDLKSKMKLVDLHLRFDSTTKTKDHRVVLE 783 (985)
Q Consensus 706 ~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~--l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 783 (985)
+..+... .+.....|+ .|.+.+ +..+. .....+|+.|+++++.... +.
T Consensus 199 l~~n~l~----------~l~~~~~L~-~L~ls~n~l~~~~------------~~~~~~L~~L~L~~n~l~~-------~~ 248 (597)
T 3oja_B 199 VSYNLLS----------TLAIPIAVE-ELDASHNSINVVR------------GPVNVELTILKLQHNNLTD-------TA 248 (597)
T ss_dssp CCSSCCS----------EEECCTTCS-EEECCSSCCCEEE------------CSCCSCCCEEECCSSCCCC-------CG
T ss_pred cccCccc----------cccCCchhh-eeeccCCcccccc------------cccCCCCCEEECCCCCCCC-------Ch
Confidence 7543222 222222232 333322 21111 1112579999998776221 24
Q ss_pred CCCCCCCCCeEEEeeccCCCCCCCChhhhccccccEEeEeccCCCCcCC-CCCCCCccceeeccCCCCceEeCCcccCCc
Q 001993 784 CLQPPSSLEKLGIYGYAGDTISPTSDWMLSLAKLRVLTLRFCNECECLP-PLGKLPCLETLVLEGMSSVKRLGNGFLGIA 862 (985)
Q Consensus 784 ~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~ 862 (985)
.+..+++|+.|++++|...... |..+..+++|+.|+|++|. +..+| ..+.+++|+.|+|++|. +..+|..+
T Consensus 249 ~l~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~Ls~N~-l~~i~~~~---- 320 (597)
T 3oja_B 249 WLLNYPGLVEVDLSYNELEKIM--YHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNH-LLHVERNQ---- 320 (597)
T ss_dssp GGGGCTTCSEEECCSSCCCEEE--SGGGTTCSSCCEEECTTSC-CCEEECSSSCCTTCCEEECCSSC-CCCCGGGH----
T ss_pred hhccCCCCCEEECCCCccCCCC--HHHhcCccCCCEEECCCCC-CCCCCcccccCCCCcEEECCCCC-CCccCccc----
Confidence 4567789999999999877664 7788899999999999995 44455 45679999999999976 55555432
Q ss_pred hhhhhhhhhhhcccccccCCCCCccceeeccccccccccccccccCcccccccccceeecccc
Q 001993 863 EDHQARADQAETASSIIRDTAFPRLETLEFLDMEKWEEWDDCEIAGGKTIMPRLRHLSICWSP 925 (985)
Q Consensus 863 ~~~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~lp~L~~L~i~~c~ 925 (985)
..+++|+.|+++++. +..++ ...+++|+.|++++|+
T Consensus 321 -------------------~~l~~L~~L~L~~N~-l~~~~-------~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 321 -------------------PQFDRLENLYLDHNS-IVTLK-------LSTHHTLKNLTLSHND 356 (597)
T ss_dssp -------------------HHHTTCSEEECCSSC-CCCCC-------CCTTCCCSEEECCSSC
T ss_pred -------------------ccCCCCCEEECCCCC-CCCcC-------hhhcCCCCEEEeeCCC
Confidence 257899999999854 44443 3468999999998875
No 41
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.76 E-value=5.1e-18 Score=197.52 Aligned_cols=292 Identities=21% Similarity=0.205 Sum_probs=215.0
Q ss_pred CcceeecCC--CCCCC-CcccccCCCCCeEecCCCCCcccc-chhhcCCCCCcEeeccCcccccccchh-hhhcccccee
Q 001993 604 TCLRSIDGL--PVGQI-PKGIKKLIHLRYLALGENPWIKEL-PEALCELCNLQTLDVSLCHYLKRLPER-IGQLINLRHL 678 (985)
Q Consensus 604 ~~Lr~L~l~--~~~~l-p~~i~~l~~Lr~L~L~~~~~i~~l-P~~i~~L~~L~~L~l~~~~~l~~lP~~-i~~L~~L~~L 678 (985)
+.+++|+++ .+..+ |..+..+++|++|+|++|. +..+ |..+.++++|++|+|++|. +..+|.. +..+++|++|
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L 109 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI-VSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKL 109 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSSTTCTTCCEE
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCc-cCEeChhhhhCCccCCEEECCCCc-CCccCcccccCCCCCCEE
Confidence 578999998 56666 5679999999999999998 7766 7789999999999999998 8888865 6899999999
Q ss_pred ecccccccccccCCCcCCCCCCCCccCceEecCCCcccccCCchhhhccccCcceeeecccccccCCCCcchhhhccccc
Q 001993 679 MNSKEEWSRLSYMPRGMERLTGLRTLGAFVASGGKSSKACSSLKSLNKLKHLEGSLTLRGLGNERDLGDDNDDEKVDLKS 758 (985)
Q Consensus 679 ~l~~n~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~~~~l~~ 758 (985)
++++|... ...|..+.++++|+.|++..+...... ...+..+++|+.| .+.-+.+..+ ....+..
T Consensus 110 ~Ls~n~i~--~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L--~l~~n~l~~~---------~~~~l~~ 174 (477)
T 2id5_A 110 DISENKIV--ILLDYMFQDLYNLKSLEVGDNDLVYIS--HRAFSGLNSLEQL--TLEKCNLTSI---------PTEALSH 174 (477)
T ss_dssp ECTTSCCC--EECTTTTTTCTTCCEEEECCTTCCEEC--TTSSTTCTTCCEE--EEESCCCSSC---------CHHHHTT
T ss_pred ECCCCccc--cCChhHccccccCCEEECCCCccceeC--hhhccCCCCCCEE--ECCCCcCccc---------ChhHhcc
Confidence 99966543 234567899999999998766544311 1135555555544 2333322221 1234667
Q ss_pred ccccccEEEEEcCCCCcchhHhhhcCCCCCCCCCeEEEeeccCCCCCCCChhhhccccccEEeEeccCCCCcCC--CCCC
Q 001993 759 KMKLVDLHLRFDSTTKTKDHRVVLECLQPPSSLEKLGIYGYAGDTISPTSDWMLSLAKLRVLTLRFCNECECLP--PLGK 836 (985)
Q Consensus 759 ~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~--~l~~ 836 (985)
+++|+.|+++.+... ......+..+++|+.|++++|...... |.......+|+.|+|++| .++.+| .++.
T Consensus 175 l~~L~~L~l~~n~i~-----~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~ 246 (477)
T 2id5_A 175 LHGLIVLRLRHLNIN-----AIRDYSFKRLYRLKVLEISHWPYLDTM--TPNCLYGLNLTSLSITHC-NLTAVPYLAVRH 246 (477)
T ss_dssp CTTCCEEEEESCCCC-----EECTTCSCSCTTCCEEEEECCTTCCEE--CTTTTTTCCCSEEEEESS-CCCSCCHHHHTT
T ss_pred cCCCcEEeCCCCcCc-----EeChhhcccCcccceeeCCCCcccccc--CcccccCccccEEECcCC-cccccCHHHhcC
Confidence 889999999977511 122235677889999999997643322 555555669999999999 455676 4789
Q ss_pred CCccceeeccCCCCceEeCCcccCCchhhhhhhhhhhcccccccCCCCCccceeeccccccccccccccccCcccccccc
Q 001993 837 LPCLETLVLEGMSSVKRLGNGFLGIAEDHQARADQAETASSIIRDTAFPRLETLEFLDMEKWEEWDDCEIAGGKTIMPRL 916 (985)
Q Consensus 837 l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~lp~L 916 (985)
+++|+.|+|+++. +..++...+ ..+++|++|++.++ .+..+.. .....+++|
T Consensus 247 l~~L~~L~Ls~n~-l~~~~~~~~----------------------~~l~~L~~L~L~~n-~l~~~~~----~~~~~l~~L 298 (477)
T 2id5_A 247 LVYLRFLNLSYNP-ISTIEGSML----------------------HELLRLQEIQLVGG-QLAVVEP----YAFRGLNYL 298 (477)
T ss_dssp CTTCCEEECCSSC-CCEECTTSC----------------------TTCTTCCEEECCSS-CCSEECT----TTBTTCTTC
T ss_pred ccccCeeECCCCc-CCccChhhc----------------------cccccCCEEECCCC-ccceECH----HHhcCcccC
Confidence 9999999999976 666655432 35789999999985 3444422 134578999
Q ss_pred cceeecccccCCCCCC-CCCCCCCcCeEEecCch
Q 001993 917 RHLSICWSPELKALPD-YILGSTSLDKLLIYYSR 949 (985)
Q Consensus 917 ~~L~i~~c~~L~~lp~-~~~~l~~L~~L~i~~c~ 949 (985)
+.|++++| .++.+|. .+..+++|+.|+++++|
T Consensus 299 ~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 299 RVLNVSGN-QLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp CEEECCSS-CCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred CEEECCCC-cCceeCHhHcCCCcccCEEEccCCC
Confidence 99999998 7888874 46789999999999876
No 42
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.76 E-value=1.1e-17 Score=184.67 Aligned_cols=223 Identities=22% Similarity=0.239 Sum_probs=120.5
Q ss_pred CCceEEEccCcCCcchhhhHHHhhccCCcceeecCC--CCCCC-CcccccCCCCCeEecCCCCCccccchhhcCCCCCcE
Q 001993 577 TKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL--PVGQI-PKGIKKLIHLRYLALGENPWIKELPEALCELCNLQT 653 (985)
Q Consensus 577 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~--~~~~l-p~~i~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~ 653 (985)
++++.|+++++.. ....+..|.++++|++|+++ .+..+ |..++.+++|++|++++|. +..+|..+. ++|++
T Consensus 54 ~~l~~L~l~~n~i---~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~--~~L~~ 127 (332)
T 2ft3_A 54 PDTTLLDLQNNDI---SELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH-LVEIPPNLP--SSLVE 127 (332)
T ss_dssp TTCCEEECCSSCC---CEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSC-CCSCCSSCC--TTCCE
T ss_pred CCCeEEECCCCcC---CccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCc-CCccCcccc--ccCCE
Confidence 5667777766643 22223446666666666666 34444 4556666667777776666 666666544 56667
Q ss_pred eeccCcccccccch-hhhhccccceeecccccccccccCCCcCCCCCCCCccCceEecCCCcccccCCchhhhccccCcc
Q 001993 654 LDVSLCHYLKRLPE-RIGQLINLRHLMNSKEEWSRLSYMPRGMERLTGLRTLGAFVASGGKSSKACSSLKSLNKLKHLEG 732 (985)
Q Consensus 654 L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~n~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~ 732 (985)
|++++|. +..+|. .+..+++|++|++++|........|..++.+ +|+.|++..+....
T Consensus 128 L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~------------------- 186 (332)
T 2ft3_A 128 LRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG------------------- 186 (332)
T ss_dssp EECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-------------------
T ss_pred EECCCCc-cCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-------------------
Confidence 7776666 555554 3566666777766654443222334444444 55555443222111
Q ss_pred eeeecccccccCCCCcchhhhcccccccccccEEEEEcCCCCcchhHhhhcCCCCCCCCCeEEEeeccCCCCCCCChhhh
Q 001993 733 SLTLRGLGNERDLGDDNDDEKVDLKSKMKLVDLHLRFDSTTKTKDHRVVLECLQPPSSLEKLGIYGYAGDTISPTSDWML 812 (985)
Q Consensus 733 ~L~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~ 812 (985)
+.. .+ .++|+.|+++++.- .......+..+++|+.|++++|....+. |.++.
T Consensus 187 ---------l~~----------~~--~~~L~~L~l~~n~i-----~~~~~~~l~~l~~L~~L~L~~N~l~~~~--~~~~~ 238 (332)
T 2ft3_A 187 ---------IPK----------DL--PETLNELHLDHNKI-----QAIELEDLLRYSKLYRLGLGHNQIRMIE--NGSLS 238 (332)
T ss_dssp ---------CCS----------SS--CSSCSCCBCCSSCC-----CCCCTTSSTTCTTCSCCBCCSSCCCCCC--TTGGG
T ss_pred ---------cCc----------cc--cCCCCEEECCCCcC-----CccCHHHhcCCCCCCEEECCCCcCCcCC--hhHhh
Confidence 000 00 02344444443320 0111233455566777777776655552 34566
Q ss_pred ccccccEEeEeccCCCCcCCC-CCCCCccceeeccCCCCceEeCC
Q 001993 813 SLAKLRVLTLRFCNECECLPP-LGKLPCLETLVLEGMSSVKRLGN 856 (985)
Q Consensus 813 ~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~l~~ 856 (985)
.+++|+.|+|++|. ++.+|. ++.+++|+.|+++++. +..++.
T Consensus 239 ~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N~-l~~~~~ 281 (332)
T 2ft3_A 239 FLPTLRELHLDNNK-LSRVPAGLPDLKLLQVVYLHTNN-ITKVGV 281 (332)
T ss_dssp GCTTCCEEECCSSC-CCBCCTTGGGCTTCCEEECCSSC-CCBCCT
T ss_pred CCCCCCEEECCCCc-CeecChhhhcCccCCEEECCCCC-CCccCh
Confidence 67777777777773 335553 6667777777777644 555543
No 43
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.75 E-value=6.4e-18 Score=204.54 Aligned_cols=130 Identities=19% Similarity=0.245 Sum_probs=104.6
Q ss_pred CCCCeEEEEEEcCCCCCccCCCccccCCCCceEEEccCcCCcchhhhHHHhhccCCcceeecCC--CCCCCCc-ccccCC
Q 001993 549 PSWKARHLMITGETRSEMVPFPSMVYDETKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL--PVGQIPK-GIKKLI 625 (985)
Q Consensus 549 ~~~~~r~l~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~--~~~~lp~-~i~~l~ 625 (985)
.+..+++|.+.++.+.... +..|.++++|++|++++|.. ..+.+..|.++++|++|+|+ .+..+|. .|.++.
T Consensus 50 lp~~~~~LdLs~N~i~~l~--~~~f~~l~~L~~L~Ls~N~i---~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~ 124 (635)
T 4g8a_A 50 LPFSTKNLDLSFNPLRHLG--SYSFFSFPELQVLDLSRCEI---QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS 124 (635)
T ss_dssp SCTTCCEEECTTSCCCEEC--TTTTTTCTTCCEEECTTCCC---CEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCT
T ss_pred CCcCCCEEEeeCCCCCCCC--HHHHhCCCCCCEEECCCCcC---CCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCC
Confidence 3567899999988875332 45788899999999999864 34445678999999999998 6777875 478999
Q ss_pred CCCeEecCCCCCccccch-hhcCCCCCcEeeccCccccc--ccchhhhhccccceeecccccc
Q 001993 626 HLRYLALGENPWIKELPE-ALCELCNLQTLDVSLCHYLK--RLPERIGQLINLRHLMNSKEEW 685 (985)
Q Consensus 626 ~Lr~L~L~~~~~i~~lP~-~i~~L~~L~~L~l~~~~~l~--~lP~~i~~L~~L~~L~l~~n~~ 685 (985)
+|++|+|++|. +..+|. .+++|++|++|++++|. +. .+|..++.+++|++|++++|..
T Consensus 125 ~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~l 185 (635)
T 4g8a_A 125 SLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKI 185 (635)
T ss_dssp TCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCc-CCCCChhhhhcCcccCeeccccCc-cccCCCchhhccchhhhhhcccCccc
Confidence 99999999998 888876 48899999999999988 54 3577888899999999987643
No 44
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.74 E-value=2.2e-18 Score=188.09 Aligned_cols=248 Identities=19% Similarity=0.209 Sum_probs=146.6
Q ss_pred CCeEEEEEEcCCCCCccCCCccccCCCCceEEEccC-cCCcchhhhHHHhhccCCcceeecCC--CCC-CCCcccccCCC
Q 001993 551 WKARHLMITGETRSEMVPFPSMVYDETKLRSLVLDQ-RLSFKPRIALSKLFDRLTCLRSIDGL--PVG-QIPKGIKKLIH 626 (985)
Q Consensus 551 ~~~r~l~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~-~~~~~~~~~~~~~~~~l~~Lr~L~l~--~~~-~lp~~i~~l~~ 626 (985)
..++++.+.++.+.+....+..+..+++|++|++++ +.. ...+|..|.++++|++|+++ .+. .+|..+..+++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l---~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 126 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL---VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT 126 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTE---ESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTT
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcc---cccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCC
Confidence 356666666665532112355566666666666663 321 11233445555666666655 333 45555556666
Q ss_pred CCeEecCCCCCcc-ccchhhcCCCCCcEeeccCcccccccchhhhhcc-ccceeecccccccccccCCCcCCCCCCCCcc
Q 001993 627 LRYLALGENPWIK-ELPEALCELCNLQTLDVSLCHYLKRLPERIGQLI-NLRHLMNSKEEWSRLSYMPRGMERLTGLRTL 704 (985)
Q Consensus 627 Lr~L~L~~~~~i~-~lP~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~-~L~~L~l~~n~~~~l~~~p~~i~~L~~L~~L 704 (985)
|++|++++|. +. .+|..+..+++|++|++++|.....+|..+..++ +|++|++++|... ..+|..++.++ |+.|
T Consensus 127 L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~--~~~~~~~~~l~-L~~L 202 (313)
T 1ogq_A 127 LVTLDFSYNA-LSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT--GKIPPTFANLN-LAFV 202 (313)
T ss_dssp CCEEECCSSE-EESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE--EECCGGGGGCC-CSEE
T ss_pred CCEEeCCCCc-cCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeee--ccCChHHhCCc-ccEE
Confidence 6666666555 33 4555555666666666665552225555555555 5666666543322 23444444444 4444
Q ss_pred CceEecCCCcccccCCchhhhccccCcceeeecccccccCCCCcchhhhcccccccccccEEEEEcCCCCcchhHhhhcC
Q 001993 705 GAFVASGGKSSKACSSLKSLNKLKHLEGSLTLRGLGNERDLGDDNDDEKVDLKSKMKLVDLHLRFDSTTKTKDHRVVLEC 784 (985)
Q Consensus 705 ~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 784 (985)
++..+.... .....+..+++|+.|+++.+.. ...+..
T Consensus 203 ~Ls~N~l~~-------------------------------------~~~~~~~~l~~L~~L~L~~N~l------~~~~~~ 239 (313)
T 1ogq_A 203 DLSRNMLEG-------------------------------------DASVLFGSDKNTQKIHLAKNSL------AFDLGK 239 (313)
T ss_dssp ECCSSEEEE-------------------------------------CCGGGCCTTSCCSEEECCSSEE------CCBGGG
T ss_pred ECcCCcccC-------------------------------------cCCHHHhcCCCCCEEECCCCce------eeecCc
Confidence 443221110 0112344556677777765541 111222
Q ss_pred CCCCCCCCeEEEeeccCC-CCCCCChhhhccccccEEeEeccCCCCcCCCCCCCCccceeeccCCCCc
Q 001993 785 LQPPSSLEKLGIYGYAGD-TISPTSDWMLSLAKLRVLTLRFCNECECLPPLGKLPCLETLVLEGMSSV 851 (985)
Q Consensus 785 l~~~~~L~~L~l~~~~~~-~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l 851 (985)
+..+++|+.|++++|... .+ |.++..+++|+.|+|++|.....+|..+.+++|+.|++.+++.+
T Consensus 240 ~~~l~~L~~L~Ls~N~l~~~~---p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 240 VGLSKNLNGLDLRNNRIYGTL---PQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCL 304 (313)
T ss_dssp CCCCTTCCEEECCSSCCEECC---CGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEE
T ss_pred ccccCCCCEEECcCCcccCcC---ChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCc
Confidence 556789999999999876 44 89999999999999999977668898899999999999997744
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.74 E-value=1.8e-17 Score=182.75 Aligned_cols=58 Identities=24% Similarity=0.257 Sum_probs=29.5
Q ss_pred CCCCeEEEeeccCCCCCCCChhhhccccccEEeEeccCCCCcCC-CCCCCCccceeeccCC
Q 001993 789 SSLEKLGIYGYAGDTISPTSDWMLSLAKLRVLTLRFCNECECLP-PLGKLPCLETLVLEGM 848 (985)
Q Consensus 789 ~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~ 848 (985)
++|+.|++++|....+. |.++..+++|+.|+|++|......+ .++.+++|+.|+|++|
T Consensus 192 ~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N 250 (330)
T 1xku_A 192 PSLTELHLDGNKITKVD--AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN 250 (330)
T ss_dssp TTCSEEECTTSCCCEEC--TGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS
T ss_pred ccCCEEECCCCcCCccC--HHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCC
Confidence 45555555555544432 3455555556666665553222222 3455555666666554
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.73 E-value=6.1e-17 Score=178.51 Aligned_cols=273 Identities=16% Similarity=0.152 Sum_probs=165.5
Q ss_pred CCceEEEccCcCCcchhhhHHHhhccCCcceeecCC--CCCCC-CcccccCCCCCeEecCCCCCccccchhhcCCCCCcE
Q 001993 577 TKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL--PVGQI-PKGIKKLIHLRYLALGENPWIKELPEALCELCNLQT 653 (985)
Q Consensus 577 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~--~~~~l-p~~i~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~ 653 (985)
+.++.|+++++.. ....+..|.++++|++|+++ .+..+ |..++.+++|++|++++|. +..+|..+. ++|++
T Consensus 52 ~~l~~L~L~~n~i---~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~--~~L~~ 125 (330)
T 1xku_A 52 PDTALLDLQNNKI---TEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-LKELPEKMP--KTLQE 125 (330)
T ss_dssp TTCCEEECCSSCC---CCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CSBCCSSCC--TTCCE
T ss_pred CCCeEEECCCCcC---CEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc-CCccChhhc--ccccE
Confidence 5677777777753 22233346777777777777 45555 6677777777777777777 777776554 67777
Q ss_pred eeccCcccccccch-hhhhccccceeecccccccccccCCCcCCCCCCCCccCceEecCCCcccccCCchhhhccccCcc
Q 001993 654 LDVSLCHYLKRLPE-RIGQLINLRHLMNSKEEWSRLSYMPRGMERLTGLRTLGAFVASGGKSSKACSSLKSLNKLKHLEG 732 (985)
Q Consensus 654 L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~n~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~ 732 (985)
|++++|. +..+|. .+..+++|++|++++|........|..++++++|+.|++..+.....+..
T Consensus 126 L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~--------------- 189 (330)
T 1xku_A 126 LRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG--------------- 189 (330)
T ss_dssp EECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSS---------------
T ss_pred EECCCCc-ccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcc---------------
Confidence 7777776 555543 46777777777777554433233445556666666665543221110000
Q ss_pred eeeecccccccCCCCcchhhhcccccccccccEEEEEcCCCCcchhHhhhcCCCCCCCCCeEEEeeccCCCCCCCChhhh
Q 001993 733 SLTLRGLGNERDLGDDNDDEKVDLKSKMKLVDLHLRFDSTTKTKDHRVVLECLQPPSSLEKLGIYGYAGDTISPTSDWML 812 (985)
Q Consensus 733 ~L~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~ 812 (985)
+ .++|+.|+++.+. .....+..+..+++|+.|++++|...... +.++.
T Consensus 190 -----------------------~--~~~L~~L~l~~n~-----l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~ 237 (330)
T 1xku_A 190 -----------------------L--PPSLTELHLDGNK-----ITKVDAASLKGLNNLAKLGLSFNSISAVD--NGSLA 237 (330)
T ss_dssp -----------------------C--CTTCSEEECTTSC-----CCEECTGGGTTCTTCCEEECCSSCCCEEC--TTTGG
T ss_pred -----------------------c--cccCCEEECCCCc-----CCccCHHHhcCCCCCCEEECCCCcCceeC--hhhcc
Confidence 0 1355666665443 11112344566789999999999877663 45788
Q ss_pred ccccccEEeEeccCCCCcCC-CCCCCCccceeeccCCCCceEeCCcccCCchhhhhhhhhhhcccccccCCCCCccceee
Q 001993 813 SLAKLRVLTLRFCNECECLP-PLGKLPCLETLVLEGMSSVKRLGNGFLGIAEDHQARADQAETASSIIRDTAFPRLETLE 891 (985)
Q Consensus 813 ~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fp~L~~L~ 891 (985)
.+++|+.|+|++|. +..+| .+..+++|++|+|++|. ++.++...+.... ....+++|+.|+
T Consensus 238 ~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N~-i~~~~~~~f~~~~----------------~~~~~~~l~~l~ 299 (330)
T 1xku_A 238 NTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNNN-ISAIGSNDFCPPG----------------YNTKKASYSGVS 299 (330)
T ss_dssp GSTTCCEEECCSSC-CSSCCTTTTTCSSCCEEECCSSC-CCCCCTTSSSCSS----------------CCTTSCCCSEEE
T ss_pred CCCCCCEEECCCCc-CccCChhhccCCCcCEEECCCCc-CCccChhhcCCcc----------------cccccccccceE
Confidence 99999999999995 45666 58899999999999865 7776654432110 012356677777
Q ss_pred ccccccccccccccccCcccccccccceeeccc
Q 001993 892 FLDMEKWEEWDDCEIAGGKTIMPRLRHLSICWS 924 (985)
Q Consensus 892 l~~~~~L~~~~~~~~~~~~~~lp~L~~L~i~~c 924 (985)
+.+.+ +..|... ......+++|+.+++++|
T Consensus 300 l~~N~-~~~~~i~--~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 300 LFSNP-VQYWEIQ--PSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CCSSS-SCGGGSC--GGGGTTCCCGGGEEC---
T ss_pred eecCc-ccccccC--ccccccccceeEEEeccc
Confidence 77644 2222210 112334555666665554
No 47
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.73 E-value=7.8e-18 Score=184.90 Aligned_cols=199 Identities=23% Similarity=0.311 Sum_probs=125.8
Q ss_pred hccCCcceeecCC--CCCCCCcccccCCCCCeEecCCCCCccccchhhcCCCCCcEeeccCcccccccchhhhh------
Q 001993 600 FDRLTCLRSIDGL--PVGQIPKGIKKLIHLRYLALGENPWIKELPEALCELCNLQTLDVSLCHYLKRLPERIGQ------ 671 (985)
Q Consensus 600 ~~~l~~Lr~L~l~--~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lP~~i~~------ 671 (985)
+.++++|++|+++ .+..+|..++.+.+|++|+|++|. +..+|..++++++|++|++++|..+..+|..+..
T Consensus 100 l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~ 178 (328)
T 4fcg_A 100 AFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNP-LRALPASIASLNRLRELSIRACPELTELPEPLASTDASGE 178 (328)
T ss_dssp GGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCC
T ss_pred hhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCc-cccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhh
Confidence 4445555665555 445667777777777777777776 6677777777777777777777666777766554
Q ss_pred ---ccccceeecccccccccccCCCcCCCCCCCCccCceEecCCCcccccCCchhhhccccCcceeeecccccccCCCCc
Q 001993 672 ---LINLRHLMNSKEEWSRLSYMPRGMERLTGLRTLGAFVASGGKSSKACSSLKSLNKLKHLEGSLTLRGLGNERDLGDD 748 (985)
Q Consensus 672 ---L~~L~~L~l~~n~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~ 748 (985)
+++|++|++++|. +..+|..++++++|++|++..+.... .. ..+..
T Consensus 179 ~~~l~~L~~L~L~~n~---l~~lp~~l~~l~~L~~L~L~~N~l~~---l~---~~l~~---------------------- 227 (328)
T 4fcg_A 179 HQGLVNLQSLRLEWTG---IRSLPASIANLQNLKSLKIRNSPLSA---LG---PAIHH---------------------- 227 (328)
T ss_dssp EEESTTCCEEEEEEEC---CCCCCGGGGGCTTCCEEEEESSCCCC---CC---GGGGG----------------------
T ss_pred hccCCCCCEEECcCCC---cCcchHhhcCCCCCCEEEccCCCCCc---Cc---hhhcc----------------------
Confidence 7777777777443 34666667777777776665433222 00 11122
Q ss_pred chhhhcccccccccccEEEEEcCCCCcchhHhhhcCCCCCCCCCeEEEeeccCCCCCCCChhhhccccccEEeEeccCCC
Q 001993 749 NDDEKVDLKSKMKLVDLHLRFDSTTKTKDHRVVLECLQPPSSLEKLGIYGYAGDTISPTSDWMLSLAKLRVLTLRFCNEC 828 (985)
Q Consensus 749 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~ 828 (985)
+++|+.|++++|. ....++..+..+++|+.|++++|...... |.++..+++|+.|+|++|...
T Consensus 228 ----------l~~L~~L~Ls~n~-----~~~~~p~~~~~l~~L~~L~L~~n~~~~~~--p~~~~~l~~L~~L~L~~n~~~ 290 (328)
T 4fcg_A 228 ----------LPKLEELDLRGCT-----ALRNYPPIFGGRAPLKRLILKDCSNLLTL--PLDIHRLTQLEKLDLRGCVNL 290 (328)
T ss_dssp ----------CTTCCEEECTTCT-----TCCBCCCCTTCCCCCCEEECTTCTTCCBC--CTTGGGCTTCCEEECTTCTTC
T ss_pred ----------CCCCCEEECcCCc-----chhhhHHHhcCCCCCCEEECCCCCchhhc--chhhhcCCCCCEEeCCCCCch
Confidence 2223333333221 01122334556678888888887644432 778888889999999988888
Q ss_pred CcCCC-CCCCCccceeeccC
Q 001993 829 ECLPP-LGKLPCLETLVLEG 847 (985)
Q Consensus 829 ~~l~~-l~~l~~L~~L~L~~ 847 (985)
+.+|. ++++++|+.+.+..
T Consensus 291 ~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 291 SRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp CCCCGGGGGSCTTCEEECCG
T ss_pred hhccHHHhhccCceEEeCCH
Confidence 87774 78888888888764
No 48
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.71 E-value=5.8e-17 Score=191.64 Aligned_cols=253 Identities=19% Similarity=0.156 Sum_probs=166.6
Q ss_pred cceeecCC--CCCCCCcccccCCCCCeEecCCCCCccccchhhcCCCCCcEeeccCcccccccchhhhhccccceeeccc
Q 001993 605 CLRSIDGL--PVGQIPKGIKKLIHLRYLALGENPWIKELPEALCELCNLQTLDVSLCHYLKRLPERIGQLINLRHLMNSK 682 (985)
Q Consensus 605 ~Lr~L~l~--~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~ 682 (985)
.+++|+++ .+..+|..+. ++|++|+|++|. ++.+|. .+++|++|+|++|. +..+|. .+++|++|++++
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~-l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~ 110 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNN-LTSLPA---LPPELRTLEVSGNQ-LTSLPV---LPPGLLELSIFS 110 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC--TTCSEEEECSCC-CSCCCC---CCTTCCEEEECSCC-CSCCCC---CCTTCCEEEECS
T ss_pred CCcEEEecCCCcCccChhhC--CCCcEEEecCCC-CCCCCC---cCCCCCEEEcCCCc-CCcCCC---CCCCCCEEECcC
Confidence 46667766 5666776665 677777777776 777776 46777777777776 666765 567777777775
Q ss_pred ccccccccCCCcCCCCCCCCccCceEecCCCcccccCCchhhhccccCcceeeecccccccCCCCcchhhhccccccccc
Q 001993 683 EEWSRLSYMPRGMERLTGLRTLGAFVASGGKSSKACSSLKSLNKLKHLEGSLTLRGLGNERDLGDDNDDEKVDLKSKMKL 762 (985)
Q Consensus 683 n~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~~~~l~~~~~L 762 (985)
|.. ..+|. .+++|+.|++..+..... .. .+++|+.| .+..+.+..+. ....+|
T Consensus 111 N~l---~~l~~---~l~~L~~L~L~~N~l~~l---p~---~l~~L~~L--~Ls~N~l~~l~-------------~~~~~L 163 (622)
T 3g06_A 111 NPL---THLPA---LPSGLCKLWIFGNQLTSL---PV---LPPGLQEL--SVSDNQLASLP-------------ALPSEL 163 (622)
T ss_dssp CCC---CCCCC---CCTTCCEEECCSSCCSCC---CC---CCTTCCEE--ECCSSCCSCCC-------------CCCTTC
T ss_pred CcC---CCCCC---CCCCcCEEECCCCCCCcC---CC---CCCCCCEE--ECcCCcCCCcC-------------CccCCC
Confidence 433 44554 456666666654433321 10 12333322 22222221111 123467
Q ss_pred ccEEEEEcCCCCcchhHhhhcCCCCCCCCCeEEEeeccCCCCCCCChhhhccccccEEeEeccCCCCcCCCCCCCCccce
Q 001993 763 VDLHLRFDSTTKTKDHRVVLECLQPPSSLEKLGIYGYAGDTISPTSDWMLSLAKLRVLTLRFCNECECLPPLGKLPCLET 842 (985)
Q Consensus 763 ~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~ 842 (985)
+.|.++.+... .++ ..+++|+.|++++|....+ |. .+++|+.|++++| .++.+|. .+++|+.
T Consensus 164 ~~L~L~~N~l~------~l~---~~~~~L~~L~Ls~N~l~~l---~~---~~~~L~~L~L~~N-~l~~l~~--~~~~L~~ 225 (622)
T 3g06_A 164 CKLWAYNNQLT------SLP---MLPSGLQELSVSDNQLASL---PT---LPSELYKLWAYNN-RLTSLPA--LPSGLKE 225 (622)
T ss_dssp CEEECCSSCCS------CCC---CCCTTCCEEECCSSCCSCC---CC---CCTTCCEEECCSS-CCSSCCC--CCTTCCE
T ss_pred CEEECCCCCCC------CCc---ccCCCCcEEECCCCCCCCC---CC---ccchhhEEECcCC-cccccCC--CCCCCCE
Confidence 77777655411 111 3357899999999887766 54 3578999999988 4556664 3588999
Q ss_pred eeccCCCCceEeCCcccCCchhhhhhhhhhhcccccccCCCCCccceeeccccccccccccccccCcccccccccceeec
Q 001993 843 LVLEGMSSVKRLGNGFLGIAEDHQARADQAETASSIIRDTAFPRLETLEFLDMEKWEEWDDCEIAGGKTIMPRLRHLSIC 922 (985)
Q Consensus 843 L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~lp~L~~L~i~ 922 (985)
|+|++|. ++.++ ..+++|++|+++++ .++.++. .+++|+.|+++
T Consensus 226 L~Ls~N~-L~~lp--------------------------~~l~~L~~L~Ls~N-~L~~lp~--------~~~~L~~L~Ls 269 (622)
T 3g06_A 226 LIVSGNR-LTSLP--------------------------VLPSELKELMVSGN-RLTSLPM--------LPSGLLSLSVY 269 (622)
T ss_dssp EECCSSC-CSCCC--------------------------CCCTTCCEEECCSS-CCSCCCC--------CCTTCCEEECC
T ss_pred EEccCCc-cCcCC--------------------------CCCCcCcEEECCCC-CCCcCCc--------ccccCcEEeCC
Confidence 9998864 54444 24689999999985 5665543 57999999999
Q ss_pred ccccCCCCCCCCCCCCCcCeEEecCch
Q 001993 923 WSPELKALPDYILGSTSLDKLLIYYSR 949 (985)
Q Consensus 923 ~c~~L~~lp~~~~~l~~L~~L~i~~c~ 949 (985)
+| .++.+|..+.++++|+.|+|++|+
T Consensus 270 ~N-~L~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 270 RN-QLTRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp SS-CCCSCCGGGGGSCTTCEEECCSCC
T ss_pred CC-CCCcCCHHHhhccccCEEEecCCC
Confidence 98 788999889999999999999997
No 49
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.71 E-value=2.9e-17 Score=188.56 Aligned_cols=138 Identities=15% Similarity=0.057 Sum_probs=61.4
Q ss_pred CCeEEEEEEcCCCCCccCCCccccCCCCceEEEccCcCCcchhhhHHHhhccCCcc-------------eeecCC--CCC
Q 001993 551 WKARHLMITGETRSEMVPFPSMVYDETKLRSLVLDQRLSFKPRIALSKLFDRLTCL-------------RSIDGL--PVG 615 (985)
Q Consensus 551 ~~~r~l~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L-------------r~L~l~--~~~ 615 (985)
..++.+.+.++.+ ..+|..+.++++|+.|+++++.. ...+|..+++++.| +.|+++ .+.
T Consensus 11 ~~L~~L~l~~n~l---~~iP~~i~~L~~L~~L~l~~n~~---~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~ 84 (454)
T 1jl5_A 11 TFLQEPLRHSSNL---TEMPVEAENVKSKTEYYNAWSEW---ERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS 84 (454)
T ss_dssp --------------------------CCHHHHHHHHHHH---HHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS
T ss_pred ccchhhhcccCch---hhCChhHhcccchhhhhccCCcc---cccCCcccccchhcchhhhhhhhccCCCEEEecCCccc
Confidence 4566677777666 33577778888888888877642 22234444444443 666666 445
Q ss_pred CCCcccccCCCCCeEecCCCCCccccchhhcCCCCCcEeeccCcccccccchhhhhccccceeecccccccccccCCCcC
Q 001993 616 QIPKGIKKLIHLRYLALGENPWIKELPEALCELCNLQTLDVSLCHYLKRLPERIGQLINLRHLMNSKEEWSRLSYMPRGM 695 (985)
Q Consensus 616 ~lp~~i~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~n~~~~l~~~p~~i 695 (985)
.+|.. ..+|++|++++|. +..+|.. +.+|++|++++|. +..+|.. .++|++|++++|.. ..+| .+
T Consensus 85 ~lp~~---~~~L~~L~l~~n~-l~~lp~~---~~~L~~L~l~~n~-l~~l~~~---~~~L~~L~L~~n~l---~~lp-~~ 149 (454)
T 1jl5_A 85 SLPEL---PPHLESLVASCNS-LTELPEL---PQSLKSLLVDNNN-LKALSDL---PPLLEYLGVSNNQL---EKLP-EL 149 (454)
T ss_dssp CCCSC---CTTCSEEECCSSC-CSSCCCC---CTTCCEEECCSSC-CSCCCSC---CTTCCEEECCSSCC---SSCC-CC
T ss_pred cCCCC---cCCCCEEEccCCc-CCccccc---cCCCcEEECCCCc-cCcccCC---CCCCCEEECcCCCC---CCCc-cc
Confidence 55542 2566666666666 5556642 2455566665554 4444321 14555555553322 3344 35
Q ss_pred CCCCCCCccCceEe
Q 001993 696 ERLTGLRTLGAFVA 709 (985)
Q Consensus 696 ~~L~~L~~L~~~~~ 709 (985)
+++++|++|++..+
T Consensus 150 ~~l~~L~~L~l~~N 163 (454)
T 1jl5_A 150 QNSSFLKIIDVDNN 163 (454)
T ss_dssp TTCTTCCEEECCSS
T ss_pred CCCCCCCEEECCCC
Confidence 55555555555443
No 50
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.71 E-value=6.3e-18 Score=184.52 Aligned_cols=253 Identities=19% Similarity=0.136 Sum_probs=143.5
Q ss_pred CCceEEEccCcCCcchhhhHHHhhccCCcceeecCC---CC-CCCCcccccCCCCCeEecCCCCCcc-ccchhhcCCCCC
Q 001993 577 TKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL---PV-GQIPKGIKKLIHLRYLALGENPWIK-ELPEALCELCNL 651 (985)
Q Consensus 577 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~---~~-~~lp~~i~~l~~Lr~L~L~~~~~i~-~lP~~i~~L~~L 651 (985)
.+++.|.++++...... .++..|.++++|++|+++ .+ ..+|..++++++|++|+|++|. +. .+|..+.++++|
T Consensus 50 ~~l~~L~L~~~~l~~~~-~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPY-PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN-VSGAIPDFLSQIKTL 127 (313)
T ss_dssp CCEEEEEEECCCCSSCE-ECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEEC-CEEECCGGGGGCTTC
T ss_pred ceEEEEECCCCCccCCc-ccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCe-eCCcCCHHHhCCCCC
Confidence 56888888877532100 234456677777777765 12 2456677777777777777776 44 667777777777
Q ss_pred cEeeccCcccccccchhhhhccccceeecccccccccccCCCcCCCCC-CCCccCceEecCCCcccccCCchhhhccccC
Q 001993 652 QTLDVSLCHYLKRLPERIGQLINLRHLMNSKEEWSRLSYMPRGMERLT-GLRTLGAFVASGGKSSKACSSLKSLNKLKHL 730 (985)
Q Consensus 652 ~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~n~~~~l~~~p~~i~~L~-~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L 730 (985)
++|++++|.....+|..+..+++|++|++++|... ..+|..++.++ +|+.|++..+....
T Consensus 128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~--~~~p~~l~~l~~~L~~L~L~~N~l~~----------------- 188 (313)
T 1ogq_A 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS--GAIPDSYGSFSKLFTSMTISRNRLTG----------------- 188 (313)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCE--EECCGGGGCCCTTCCEEECCSSEEEE-----------------
T ss_pred CEEeCCCCccCCcCChHHhcCCCCCeEECcCCccc--CcCCHHHhhhhhcCcEEECcCCeeec-----------------
Confidence 77777777633366667777777777777744332 24555555555 55555443111000
Q ss_pred cceeeecccccccCCCCcchhhhcccccccccccEEEEEcCCCCcchhHhhhcCCCCCCCCCeEEEeeccCCCCCCCChh
Q 001993 731 EGSLTLRGLGNERDLGDDNDDEKVDLKSKMKLVDLHLRFDSTTKTKDHRVVLECLQPPSSLEKLGIYGYAGDTISPTSDW 810 (985)
Q Consensus 731 ~~~L~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~ 810 (985)
..+..+..+. |+.|++++|...... |..
T Consensus 189 -------------------------------------------------~~~~~~~~l~-L~~L~Ls~N~l~~~~--~~~ 216 (313)
T 1ogq_A 189 -------------------------------------------------KIPPTFANLN-LAFVDLSRNMLEGDA--SVL 216 (313)
T ss_dssp -------------------------------------------------ECCGGGGGCC-CSEEECCSSEEEECC--GGG
T ss_pred -------------------------------------------------cCChHHhCCc-ccEEECcCCcccCcC--CHH
Confidence 0001111112 566666665543321 566
Q ss_pred hhccccccEEeEeccCCCCcCCCCCCCCccceeeccCCCCceEeCCcccCCchhhhhhhhhhhcccccccCCCCCcccee
Q 001993 811 MLSLAKLRVLTLRFCNECECLPPLGKLPCLETLVLEGMSSVKRLGNGFLGIAEDHQARADQAETASSIIRDTAFPRLETL 890 (985)
Q Consensus 811 ~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fp~L~~L 890 (985)
+..+++|+.|+|++|.....+|.+..+++|++|+|++|.-...+|..+ ..+++|++|
T Consensus 217 ~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l-----------------------~~l~~L~~L 273 (313)
T 1ogq_A 217 FGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGL-----------------------TQLKFLHSL 273 (313)
T ss_dssp CCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGG-----------------------GGCTTCCEE
T ss_pred HhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHH-----------------------hcCcCCCEE
Confidence 667777777777777554455556677777777777755222333321 245677777
Q ss_pred eccccccccccccccccCcccccccccceeecccccCCCCC
Q 001993 891 EFLDMEKWEEWDDCEIAGGKTIMPRLRHLSICWSPELKALP 931 (985)
Q Consensus 891 ~l~~~~~L~~~~~~~~~~~~~~lp~L~~L~i~~c~~L~~lp 931 (985)
+++++.--..++. ...+++|+.|++.+++.+...|
T Consensus 274 ~Ls~N~l~~~ip~------~~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 274 NVSFNNLCGEIPQ------GGNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp ECCSSEEEEECCC------STTGGGSCGGGTCSSSEEESTT
T ss_pred ECcCCcccccCCC------CccccccChHHhcCCCCccCCC
Confidence 7766432112222 1356777777777766555433
No 51
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.70 E-value=1.8e-16 Score=191.86 Aligned_cols=135 Identities=26% Similarity=0.249 Sum_probs=109.9
Q ss_pred CCCccccCCCCceEEEccCcCCcchhhhHHHhhccCCcceeecCC--CCCCCCc-ccccCCCCCeEecCCCCCccccch-
Q 001993 568 PFPSMVYDETKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL--PVGQIPK-GIKKLIHLRYLALGENPWIKELPE- 643 (985)
Q Consensus 568 ~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~--~~~~lp~-~i~~l~~Lr~L~L~~~~~i~~lP~- 643 (985)
.+|..+. +.++.|++++|.. ....+..|.++++|++|+++ .+..+|+ .|.+|++|++|+|++|. +..+|.
T Consensus 45 ~vP~~lp--~~~~~LdLs~N~i---~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~~~ 118 (635)
T 4g8a_A 45 KIPDNLP--FSTKNLDLSFNPL---RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALG 118 (635)
T ss_dssp SCCSSSC--TTCCEEECTTSCC---CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECGG
T ss_pred ccCCCCC--cCCCEEEeeCCCC---CCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc-CCCCCHH
Confidence 3454332 5799999999874 44445679999999999999 6777865 58999999999999999 999886
Q ss_pred hhcCCCCCcEeeccCcccccccch-hhhhccccceeecccccccccccCCCcCCCCCCCCccCceEec
Q 001993 644 ALCELCNLQTLDVSLCHYLKRLPE-RIGQLINLRHLMNSKEEWSRLSYMPRGMERLTGLRTLGAFVAS 710 (985)
Q Consensus 644 ~i~~L~~L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~n~~~~l~~~p~~i~~L~~L~~L~~~~~~ 710 (985)
.+..|++|++|++++|. +..+|. .+++|++|++|++++|.... ..+|..++.+++|++|++..+.
T Consensus 119 ~f~~L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~-~~~~~~~~~l~~L~~L~L~~N~ 184 (635)
T 4g8a_A 119 AFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQS-FKLPEYFSNLTNLEHLDLSSNK 184 (635)
T ss_dssp GGTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCC-CCCCGGGGGCTTCCEEECCSSC
T ss_pred HhcCCCCCCEEECCCCc-CCCCChhhhhcCcccCeeccccCcccc-CCCchhhccchhhhhhcccCcc
Confidence 57999999999999998 888876 48999999999999776533 2457778899999999886554
No 52
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.70 E-value=1.9e-16 Score=181.68 Aligned_cols=133 Identities=18% Similarity=0.229 Sum_probs=72.8
Q ss_pred CCeEEEEEEcCCCCCccCCCccccCCCCceEEEccCcCCcchhhhHHHhhccCCcceeecCC--CCCCCCcccccCCCCC
Q 001993 551 WKARHLMITGETRSEMVPFPSMVYDETKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL--PVGQIPKGIKKLIHLR 628 (985)
Q Consensus 551 ~~~r~l~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~--~~~~lp~~i~~l~~Lr 628 (985)
..++.+.+.++...+ ++. ..++|+.|.++++....+ +. -.+.|++|+++ .+..+| .++.+.+|+
T Consensus 91 ~~L~~L~l~~n~l~~---lp~---~~~~L~~L~l~~n~l~~l----~~---~~~~L~~L~L~~n~l~~lp-~~~~l~~L~ 156 (454)
T 1jl5_A 91 PHLESLVASCNSLTE---LPE---LPQSLKSLLVDNNNLKAL----SD---LPPLLEYLGVSNNQLEKLP-ELQNSSFLK 156 (454)
T ss_dssp TTCSEEECCSSCCSS---CCC---CCTTCCEEECCSSCCSCC----CS---CCTTCCEEECCSSCCSSCC-CCTTCTTCC
T ss_pred CCCCEEEccCCcCCc---ccc---ccCCCcEEECCCCccCcc----cC---CCCCCCEEECcCCCCCCCc-ccCCCCCCC
Confidence 456666666655532 222 235666666666643111 11 11466666666 455566 466666677
Q ss_pred eEecCCCCCccccchhhcCCCCCcEeeccCcccccccchhhhhccccceeecccccccccccCCCcCCCCCCCCccCceE
Q 001993 629 YLALGENPWIKELPEALCELCNLQTLDVSLCHYLKRLPERIGQLINLRHLMNSKEEWSRLSYMPRGMERLTGLRTLGAFV 708 (985)
Q Consensus 629 ~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~n~~~~l~~~p~~i~~L~~L~~L~~~~ 708 (985)
+|++++|. +..+|..+ .+|++|++++|. +..+| .++.+++|++|++++|.. ..+|... ++|++|++..
T Consensus 157 ~L~l~~N~-l~~lp~~~---~~L~~L~L~~n~-l~~l~-~~~~l~~L~~L~l~~N~l---~~l~~~~---~~L~~L~l~~ 224 (454)
T 1jl5_A 157 IIDVDNNS-LKKLPDLP---PSLEFIAAGNNQ-LEELP-ELQNLPFLTAIYADNNSL---KKLPDLP---LSLESIVAGN 224 (454)
T ss_dssp EEECCSSC-CSCCCCCC---TTCCEEECCSSC-CSSCC-CCTTCTTCCEEECCSSCC---SSCCCCC---TTCCEEECCS
T ss_pred EEECCCCc-CcccCCCc---ccccEEECcCCc-CCcCc-cccCCCCCCEEECCCCcC---CcCCCCc---CcccEEECcC
Confidence 77776666 66666532 366666776665 55566 466666677776664433 2333322 3555555544
Q ss_pred e
Q 001993 709 A 709 (985)
Q Consensus 709 ~ 709 (985)
+
T Consensus 225 n 225 (454)
T 1jl5_A 225 N 225 (454)
T ss_dssp S
T ss_pred C
Confidence 3
No 53
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.69 E-value=3.3e-16 Score=172.76 Aligned_cols=134 Identities=16% Similarity=0.107 Sum_probs=85.8
Q ss_pred CCCCeEEEeeccCCCCCCCChhhhccccccEEeEeccCCCCcCC-CCCCCCccceeeccCCCCceEeCCcccCCchhhhh
Q 001993 789 SSLEKLGIYGYAGDTISPTSDWMLSLAKLRVLTLRFCNECECLP-PLGKLPCLETLVLEGMSSVKRLGNGFLGIAEDHQA 867 (985)
Q Consensus 789 ~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~ 867 (985)
++|+.|++++|....+. |.++..+++|+.|+|++|......+ .++.+++|+.|+|++|. +..+|..+
T Consensus 193 ~~L~~L~l~~n~i~~~~--~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l--------- 260 (332)
T 2ft3_A 193 ETLNELHLDHNKIQAIE--LEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK-LSRVPAGL--------- 260 (332)
T ss_dssp SSCSCCBCCSSCCCCCC--TTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSC-CCBCCTTG---------
T ss_pred CCCCEEECCCCcCCccC--HHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCc-CeecChhh---------
Confidence 57888888888776663 4667788888888888884433222 37788888888888864 55665542
Q ss_pred hhhhhhcccccccCCCCCccceeecccccccccccccccc--CcccccccccceeecccccC--CCCCCCCCCCCCcCeE
Q 001993 868 RADQAETASSIIRDTAFPRLETLEFLDMEKWEEWDDCEIA--GGKTIMPRLRHLSICWSPEL--KALPDYILGSTSLDKL 943 (985)
Q Consensus 868 ~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~--~~~~~lp~L~~L~i~~c~~L--~~lp~~~~~l~~L~~L 943 (985)
..+++|++|+++++ .++.+...... .....+++|+.|++.+|+.. ...|..+..+++|+.|
T Consensus 261 --------------~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l 325 (332)
T 2ft3_A 261 --------------PDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAI 325 (332)
T ss_dssp --------------GGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTE
T ss_pred --------------hcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhh
Confidence 24778888888874 35544331100 00112577888888888644 2344566778888888
Q ss_pred EecCch
Q 001993 944 LIYYSR 949 (985)
Q Consensus 944 ~i~~c~ 949 (985)
++++|.
T Consensus 326 ~l~~n~ 331 (332)
T 2ft3_A 326 QFGNYK 331 (332)
T ss_dssp EC----
T ss_pred hccccc
Confidence 888774
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.67 E-value=8.2e-17 Score=179.26 Aligned_cols=98 Identities=22% Similarity=0.297 Sum_probs=57.3
Q ss_pred cceeecCC--CCCCCCc-ccccCCCCCeEecCCCCCccccc-hhhcCCCCCcEeeccCcccccccchh-hhhccccceee
Q 001993 605 CLRSIDGL--PVGQIPK-GIKKLIHLRYLALGENPWIKELP-EALCELCNLQTLDVSLCHYLKRLPER-IGQLINLRHLM 679 (985)
Q Consensus 605 ~Lr~L~l~--~~~~lp~-~i~~l~~Lr~L~L~~~~~i~~lP-~~i~~L~~L~~L~l~~~~~l~~lP~~-i~~L~~L~~L~ 679 (985)
.|++|+++ .+..+|. .+..+++|++|++++|. +..++ ..+..+++|++|++++|. +..+|.. +..+++|++|+
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~ 130 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG-INTIEEDSFSSLGSLEHLDLSYNY-LSNLSSSWFKPLSSLTFLN 130 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC-CSSCCHHHHTTCTTCSEEE
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCc-cCccCHhhcCCCCCCCEEECCCCc-CCcCCHhHhCCCccCCEEE
Confidence 56666666 4555544 56666666666666665 55543 346666666666666665 5555554 56666666666
Q ss_pred cccccccccccCCC--cCCCCCCCCccCce
Q 001993 680 NSKEEWSRLSYMPR--GMERLTGLRTLGAF 707 (985)
Q Consensus 680 l~~n~~~~l~~~p~--~i~~L~~L~~L~~~ 707 (985)
+++|.. ..+|. .++++++|++|++.
T Consensus 131 L~~n~l---~~l~~~~~~~~l~~L~~L~l~ 157 (353)
T 2z80_A 131 LLGNPY---KTLGETSLFSHLTKLQILRVG 157 (353)
T ss_dssp CTTCCC---SSSCSSCSCTTCTTCCEEEEE
T ss_pred CCCCCC---cccCchhhhccCCCCcEEECC
Confidence 664432 34444 35555555555554
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.64 E-value=1.2e-15 Score=166.19 Aligned_cols=240 Identities=18% Similarity=0.133 Sum_probs=144.3
Q ss_pred eecCC--CCCCCCcccccCCCCCeEecCCCCCccccchh-hcCCCCCcEeeccCccccccc---chhhhhccccceeecc
Q 001993 608 SIDGL--PVGQIPKGIKKLIHLRYLALGENPWIKELPEA-LCELCNLQTLDVSLCHYLKRL---PERIGQLINLRHLMNS 681 (985)
Q Consensus 608 ~L~l~--~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lP~~-i~~L~~L~~L~l~~~~~l~~l---P~~i~~L~~L~~L~l~ 681 (985)
.++++ .+..+|..+. .+|++|++++|. +..+|.. +.++++|++|++++|. +..+ |..+..+++|++|+++
T Consensus 11 ~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~-l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGIP--SSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSSNG-LSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp EEECCSSCCSSCCSCCC--TTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSC-CCEEEEEEHHHHSCSCCCEEECC
T ss_pred EEEcCCCCcccCCCCCC--CCCCEEECCCCc-cCccCHhHhhccccCCEEECCCCc-cCcccCcccccccccccCEEECC
Confidence 34444 5666776554 578888888887 7788765 5788888888888887 5544 5667778888888888
Q ss_pred cccccccccCCCcCCCCCCCCccCceEecCCCcccccCCchhhhccccCcceeeecccccccCCCCcchhhhcccccccc
Q 001993 682 KEEWSRLSYMPRGMERLTGLRTLGAFVASGGKSSKACSSLKSLNKLKHLEGSLTLRGLGNERDLGDDNDDEKVDLKSKMK 761 (985)
Q Consensus 682 ~n~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~~~~l~~~~~ 761 (985)
+|.. ..+|..+..+++|++|++..+.... +..
T Consensus 87 ~n~i---~~l~~~~~~l~~L~~L~l~~n~l~~----------~~~----------------------------------- 118 (306)
T 2z66_A 87 FNGV---ITMSSNFLGLEQLEHLDFQHSNLKQ----------MSE----------------------------------- 118 (306)
T ss_dssp SCSE---EEEEEEEETCTTCCEEECTTSEEES----------STT-----------------------------------
T ss_pred CCcc---ccChhhcCCCCCCCEEECCCCcccc----------ccc-----------------------------------
Confidence 5543 4556566666666666553211100 000
Q ss_pred cccEEEEEcCCCCcchhHhhhcCCCCCCCCCeEEEeeccCCCCCCCChhhhccccccEEeEeccCCCC-cCC-CCCCCCc
Q 001993 762 LVDLHLRFDSTTKTKDHRVVLECLQPPSSLEKLGIYGYAGDTISPTSDWMLSLAKLRVLTLRFCNECE-CLP-PLGKLPC 839 (985)
Q Consensus 762 L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~-~l~-~l~~l~~ 839 (985)
...+..+++|+.|++++|...... |..+..+++|+.|+|++|.... .+| .++.+++
T Consensus 119 --------------------~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 176 (306)
T 2z66_A 119 --------------------FSVFLSLRNLIYLDISHTHTRVAF--NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 176 (306)
T ss_dssp --------------------TTTTTTCTTCCEEECTTSCCEECS--TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred --------------------chhhhhccCCCEEECCCCcCCccc--hhhcccCcCCCEEECCCCccccccchhHHhhCcC
Confidence 011222345555555555443331 4455566777777777764433 233 4667777
Q ss_pred cceeeccCCCCceEeCCcccCCchhhhhhhhhhhcccccccCCCCCccceeeccccccccccccccccCcccccccccce
Q 001993 840 LETLVLEGMSSVKRLGNGFLGIAEDHQARADQAETASSIIRDTAFPRLETLEFLDMEKWEEWDDCEIAGGKTIMPRLRHL 919 (985)
Q Consensus 840 L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~lp~L~~L 919 (985)
|+.|+|++|. +..++...+ ..+++|++|+++++. +..+... ....+++|+.|
T Consensus 177 L~~L~Ls~n~-l~~~~~~~~----------------------~~l~~L~~L~L~~N~-l~~~~~~----~~~~l~~L~~L 228 (306)
T 2z66_A 177 LTFLDLSQCQ-LEQLSPTAF----------------------NSLSSLQVLNMSHNN-FFSLDTF----PYKCLNSLQVL 228 (306)
T ss_dssp CCEEECTTSC-CCEECTTTT----------------------TTCTTCCEEECTTSC-CSBCCSG----GGTTCTTCCEE
T ss_pred CCEEECCCCC-cCCcCHHHh----------------------cCCCCCCEEECCCCc-cCccChh----hccCcccCCEe
Confidence 7777777754 444432211 245677777777642 3333221 23457888888
Q ss_pred eecccccCCCCCCCCCCCC-CcCeEEecCch
Q 001993 920 SICWSPELKALPDYILGST-SLDKLLIYYSR 949 (985)
Q Consensus 920 ~i~~c~~L~~lp~~~~~l~-~L~~L~i~~c~ 949 (985)
++++|......|..+..++ +|+.|++++++
T Consensus 229 ~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 229 DYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp ECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred ECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 8888854444566667774 88888888876
No 56
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.64 E-value=3e-16 Score=140.45 Aligned_cols=81 Identities=20% Similarity=0.434 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhc--ccCcHHHHHHHHHHHHhhhchhhHHH
Q 001993 4 AIVSTILEQLALILVEQTAAGVRLIAGAEEEVENLHRRFHLIKAVVEDAEKR--QMKETAVRVWLDDLKHASYDMEDVLD 81 (985)
Q Consensus 4 ~~~~~~~~kl~~~~~~~~~~e~~~~~~~~~~~~~L~~~l~~i~~~l~~a~~~--~~~~~~~~~wl~~l~~~~yd~ed~ld 81 (985)
|+++++++||++ ++.+|+.++.||++++++|+++|+.|++||.+|+++ +.++++++.|+++||++|||+||+||
T Consensus 1 a~v~~ll~KL~~----ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD 76 (115)
T 3qfl_A 1 AAISNLIPKLGE----LLTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVD 76 (115)
T ss_dssp CTTCSHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHH----HHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999 999999999999999999999999999999999987 56889999999999999999999999
Q ss_pred HHHHHHH
Q 001993 82 EWNTAIR 88 (985)
Q Consensus 82 ~~~~~~~ 88 (985)
+|.++..
T Consensus 77 ~f~~~~~ 83 (115)
T 3qfl_A 77 KFLVQVD 83 (115)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9999874
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.64 E-value=4.8e-15 Score=170.87 Aligned_cols=237 Identities=22% Similarity=0.278 Sum_probs=144.3
Q ss_pred eecCC--CCCCCCcccccCCCCCeEecCCCCCcccc-chhhcCCCCCcEeeccCcccccccc-hhhhhccccceeecccc
Q 001993 608 SIDGL--PVGQIPKGIKKLIHLRYLALGENPWIKEL-PEALCELCNLQTLDVSLCHYLKRLP-ERIGQLINLRHLMNSKE 683 (985)
Q Consensus 608 ~L~l~--~~~~lp~~i~~l~~Lr~L~L~~~~~i~~l-P~~i~~L~~L~~L~l~~~~~l~~lP-~~i~~L~~L~~L~l~~n 683 (985)
.++++ .+..+|..+. .+|++|+|++|. +..+ |..+..+++|++|+|++|. +..++ ..+..+++|++|++++|
T Consensus 58 ~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 58 KVVCTRRGLSEVPQGIP--SNTRYLNLMENN-IQMIQADTFRHLHHLEVLQLGRNS-IRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp EEECCSSCCSSCCSCCC--TTCSEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS
T ss_pred EEEECCCCcCccCCCCC--CCccEEECcCCc-CceECHHHcCCCCCCCEEECCCCc-cCCcChhhccCcccCCEEECCCC
Confidence 44444 5667776654 578888998888 6665 5678888889999998887 55554 66788888999988865
Q ss_pred cccccccCCCc-CCCCCCCCccCceEecCCCcccccCCchhhhccccCcceeeecccccccCCCCcchhhhccccccccc
Q 001993 684 EWSRLSYMPRG-MERLTGLRTLGAFVASGGKSSKACSSLKSLNKLKHLEGSLTLRGLGNERDLGDDNDDEKVDLKSKMKL 762 (985)
Q Consensus 684 ~~~~l~~~p~~-i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~~~~l~~~~~L 762 (985)
.. ..+|.. ++.+++|++|++..+.... +.
T Consensus 134 ~l---~~~~~~~~~~l~~L~~L~L~~N~l~~----------~~------------------------------------- 163 (452)
T 3zyi_A 134 WL---TVIPSGAFEYLSKLRELWLRNNPIES----------IP------------------------------------- 163 (452)
T ss_dssp CC---SBCCTTTSSSCTTCCEEECCSCCCCE----------EC-------------------------------------
T ss_pred cC---CccChhhhcccCCCCEEECCCCCcce----------eC-------------------------------------
Confidence 43 455544 6677777777664322111 00
Q ss_pred ccEEEEEcCCCCcchhHhhhcCCCCCCCCCeEEEeecc-CCCCCCCChhhhccccccEEeEeccCCCCcCCCCCCCCccc
Q 001993 763 VDLHLRFDSTTKTKDHRVVLECLQPPSSLEKLGIYGYA-GDTISPTSDWMLSLAKLRVLTLRFCNECECLPPLGKLPCLE 841 (985)
Q Consensus 763 ~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~ 841 (985)
...+..+++|+.|++++|. ...+. +..+..+++|+.|+|++| .++.+|.+..+++|+
T Consensus 164 -------------------~~~~~~l~~L~~L~l~~~~~l~~i~--~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~ 221 (452)
T 3zyi_A 164 -------------------SYAFNRVPSLMRLDLGELKKLEYIS--EGAFEGLFNLKYLNLGMC-NIKDMPNLTPLVGLE 221 (452)
T ss_dssp -------------------TTTTTTCTTCCEEECCCCTTCCEEC--TTTTTTCTTCCEEECTTS-CCSSCCCCTTCTTCC
T ss_pred -------------------HhHHhcCCcccEEeCCCCCCccccC--hhhccCCCCCCEEECCCC-ccccccccccccccc
Confidence 0011123344444444422 11121 234556677777777777 445566777777777
Q ss_pred eeeccCCCCceEeCCcccCCchhhhhhhhhhhcccccccCCCCCccceeeccccccccccccccccCcccccccccceee
Q 001993 842 TLVLEGMSSVKRLGNGFLGIAEDHQARADQAETASSIIRDTAFPRLETLEFLDMEKWEEWDDCEIAGGKTIMPRLRHLSI 921 (985)
Q Consensus 842 ~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~lp~L~~L~i 921 (985)
.|+|++|. +..++...+ ..+++|++|++.++ .+..+.. .....+++|+.|++
T Consensus 222 ~L~Ls~N~-l~~~~~~~~----------------------~~l~~L~~L~L~~n-~l~~~~~----~~~~~l~~L~~L~L 273 (452)
T 3zyi_A 222 ELEMSGNH-FPEIRPGSF----------------------HGLSSLKKLWVMNS-QVSLIER----NAFDGLASLVELNL 273 (452)
T ss_dssp EEECTTSC-CSEECGGGG----------------------TTCTTCCEEECTTS-CCCEECT----TTTTTCTTCCEEEC
T ss_pred EEECcCCc-CcccCcccc----------------------cCccCCCEEEeCCC-cCceECH----HHhcCCCCCCEEEC
Confidence 77777754 444432211 24667777777764 2333322 12345778888888
Q ss_pred cccccCCCCC-CCCCCCCCcCeEEecCch
Q 001993 922 CWSPELKALP-DYILGSTSLDKLLIYYSR 949 (985)
Q Consensus 922 ~~c~~L~~lp-~~~~~l~~L~~L~i~~c~ 949 (985)
++| .++.+| ..+..+++|+.|+++++|
T Consensus 274 ~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 274 AHN-NLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CSS-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred CCC-cCCccChHHhccccCCCEEEccCCC
Confidence 777 566666 345667788888887665
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.63 E-value=6.4e-15 Score=169.16 Aligned_cols=237 Identities=20% Similarity=0.277 Sum_probs=140.5
Q ss_pred eecCC--CCCCCCcccccCCCCCeEecCCCCCccccc-hhhcCCCCCcEeeccCcccccccc-hhhhhccccceeecccc
Q 001993 608 SIDGL--PVGQIPKGIKKLIHLRYLALGENPWIKELP-EALCELCNLQTLDVSLCHYLKRLP-ERIGQLINLRHLMNSKE 683 (985)
Q Consensus 608 ~L~l~--~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lP-~~i~~L~~L~~L~l~~~~~l~~lP-~~i~~L~~L~~L~l~~n 683 (985)
.++++ .+..+|..+. .++++|+|++|. +..++ ..+.++++|++|+|++|. +..++ ..+..+++|++|++++|
T Consensus 47 ~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 47 KVICVRKNLREVPDGIS--TNTRLLNLHENQ-IQIIKVNSFKHLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp EEECCSCCCSSCCSCCC--TTCSEEECCSCC-CCEECTTTTSSCSSCCEEECCSSC-CCEECGGGGTTCSSCCEEECCSS
T ss_pred EEEeCCCCcCcCCCCCC--CCCcEEEccCCc-CCeeCHHHhhCCCCCCEEECCCCc-CCccChhhccCCccCCEEECCCC
Confidence 44444 5677787665 678889999888 77665 578888999999999887 65554 56788899999999865
Q ss_pred cccccccCCC-cCCCCCCCCccCceEecCCCcccccCCchhhhccccCcceeeecccccccCCCCcchhhhccccccccc
Q 001993 684 EWSRLSYMPR-GMERLTGLRTLGAFVASGGKSSKACSSLKSLNKLKHLEGSLTLRGLGNERDLGDDNDDEKVDLKSKMKL 762 (985)
Q Consensus 684 ~~~~l~~~p~-~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~~~~l~~~~~L 762 (985)
.. ..+|. .+..+++|++|++..+.... +.
T Consensus 123 ~l---~~~~~~~~~~l~~L~~L~L~~N~i~~----------~~------------------------------------- 152 (440)
T 3zyj_A 123 RL---TTIPNGAFVYLSKLKELWLRNNPIES----------IP------------------------------------- 152 (440)
T ss_dssp CC---SSCCTTTSCSCSSCCEEECCSCCCCE----------EC-------------------------------------
T ss_pred cC---CeeCHhHhhccccCceeeCCCCcccc----------cC-------------------------------------
Confidence 43 45554 46777777777664322111 00
Q ss_pred ccEEEEEcCCCCcchhHhhhcCCCCCCCCCeEEEeecc-CCCCCCCChhhhccccccEEeEeccCCCCcCCCCCCCCccc
Q 001993 763 VDLHLRFDSTTKTKDHRVVLECLQPPSSLEKLGIYGYA-GDTISPTSDWMLSLAKLRVLTLRFCNECECLPPLGKLPCLE 841 (985)
Q Consensus 763 ~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~ 841 (985)
...+..+++|+.|+++++. ...+. +..+..+++|+.|+|++| .++.+|.+..+++|+
T Consensus 153 -------------------~~~~~~l~~L~~L~l~~~~~l~~i~--~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~ 210 (440)
T 3zyj_A 153 -------------------SYAFNRIPSLRRLDLGELKRLSYIS--EGAFEGLSNLRYLNLAMC-NLREIPNLTPLIKLD 210 (440)
T ss_dssp -------------------TTTTTTCTTCCEEECCCCTTCCEEC--TTTTTTCSSCCEEECTTS-CCSSCCCCTTCSSCC
T ss_pred -------------------HHHhhhCcccCEeCCCCCCCcceeC--cchhhcccccCeecCCCC-cCccccccCCCcccC
Confidence 0011122334444444322 11121 234555666666666666 445566666667777
Q ss_pred eeeccCCCCceEeCCcccCCchhhhhhhhhhhcccccccCCCCCccceeeccccccccccccccccCcccccccccceee
Q 001993 842 TLVLEGMSSVKRLGNGFLGIAEDHQARADQAETASSIIRDTAFPRLETLEFLDMEKWEEWDDCEIAGGKTIMPRLRHLSI 921 (985)
Q Consensus 842 ~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~lp~L~~L~i 921 (985)
.|+|++|. +..++...+ ..+++|++|++.++ .++.+.. .....+++|+.|++
T Consensus 211 ~L~Ls~N~-l~~~~~~~~----------------------~~l~~L~~L~L~~n-~l~~~~~----~~~~~l~~L~~L~L 262 (440)
T 3zyj_A 211 ELDLSGNH-LSAIRPGSF----------------------QGLMHLQKLWMIQS-QIQVIER----NAFDNLQSLVEINL 262 (440)
T ss_dssp EEECTTSC-CCEECTTTT----------------------TTCTTCCEEECTTC-CCCEECT----TSSTTCTTCCEEEC
T ss_pred EEECCCCc-cCccChhhh----------------------ccCccCCEEECCCC-ceeEECh----hhhcCCCCCCEEEC
Confidence 77776653 444432211 24566777776663 2333322 12345677777777
Q ss_pred cccccCCCCCC-CCCCCCCcCeEEecCch
Q 001993 922 CWSPELKALPD-YILGSTSLDKLLIYYSR 949 (985)
Q Consensus 922 ~~c~~L~~lp~-~~~~l~~L~~L~i~~c~ 949 (985)
++| .++.+|. .+..+++|+.|+++++|
T Consensus 263 ~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 263 AHN-NLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TTS-CCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred CCC-CCCccChhHhccccCCCEEEcCCCC
Confidence 776 5555553 34567777777776655
No 59
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.63 E-value=7.5e-16 Score=171.45 Aligned_cols=250 Identities=18% Similarity=0.135 Sum_probs=168.2
Q ss_pred CCceEEEccCcCCcchhhhHHHhhccCCcceeecCC--CCCCC-CcccccCCCCCeEecCCCCCccccchh-hcCCCCCc
Q 001993 577 TKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL--PVGQI-PKGIKKLIHLRYLALGENPWIKELPEA-LCELCNLQ 652 (985)
Q Consensus 577 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~--~~~~l-p~~i~~l~~Lr~L~L~~~~~i~~lP~~-i~~L~~L~ 652 (985)
++|+.|+++++.. ....+..|.++++|++|+++ .+..+ |..++.+++|++|++++|. +..+|.. ++.+++|+
T Consensus 52 ~~L~~L~l~~n~i---~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~ 127 (353)
T 2z80_A 52 EAVKSLDLSNNRI---TYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY-LSNLSSSWFKPLSSLT 127 (353)
T ss_dssp TTCCEEECTTSCC---CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSSCCHHHHTTCTTCS
T ss_pred ccCcEEECCCCcC---cccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc-CCcCCHhHhCCCccCC
Confidence 5788999888864 33334457888899999988 45555 4568888999999999988 8888876 78899999
Q ss_pred EeeccCcccccccch--hhhhccccceeecccccccccccC-CCcCCCCCCCCccCceEecCCCcccccCCchhhhcccc
Q 001993 653 TLDVSLCHYLKRLPE--RIGQLINLRHLMNSKEEWSRLSYM-PRGMERLTGLRTLGAFVASGGKSSKACSSLKSLNKLKH 729 (985)
Q Consensus 653 ~L~l~~~~~l~~lP~--~i~~L~~L~~L~l~~n~~~~l~~~-p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~ 729 (985)
+|++++|. +..+|. .+..+++|++|++++|. .+..+ |..++++++|++|++..+..... ....+..+++|+.
T Consensus 128 ~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~--~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~l~~l~~L~~ 202 (353)
T 2z80_A 128 FLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMD--TFTKIQRKDFAGLTFLEELEIDASDLQSY--EPKSLKSIQNVSH 202 (353)
T ss_dssp EEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESS--SCCEECTTTTTTCCEEEEEEEEETTCCEE--CTTTTTTCSEEEE
T ss_pred EEECCCCC-CcccCchhhhccCCCCcEEECCCCc--cccccCHHHccCCCCCCEEECCCCCcCcc--CHHHHhccccCCe
Confidence 99999887 777876 67889999999998542 23444 45688888899888877654431 1223455555554
Q ss_pred CcceeeecccccccCCCCcchhhhcccccccccccEEEEEcCCCCcchhHhhhcCCCCCCCCCeEEEeeccCCC--CCCC
Q 001993 730 LEGSLTLRGLGNERDLGDDNDDEKVDLKSKMKLVDLHLRFDSTTKTKDHRVVLECLQPPSSLEKLGIYGYAGDT--ISPT 807 (985)
Q Consensus 730 L~~~L~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~ 807 (985)
| .+.-+.+.. .....+..+++|+.|+++.+...... ...+........++.+++.++.... +..+
T Consensus 203 L--~l~~n~l~~---------~~~~~~~~~~~L~~L~L~~n~l~~~~--~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l 269 (353)
T 2z80_A 203 L--ILHMKQHIL---------LLEIFVDVTSSVECLELRDTDLDTFH--FSELSTGETNSLIKKFTFRNVKITDESLFQV 269 (353)
T ss_dssp E--EEECSCSTT---------HHHHHHHHTTTEEEEEEESCBCTTCC--CC------CCCCCCEEEEESCBCCHHHHHHH
T ss_pred e--cCCCCcccc---------chhhhhhhcccccEEECCCCcccccc--ccccccccccchhhccccccccccCcchhhh
Confidence 4 233222211 11122344678899999877511100 0011122345678888888765432 1112
Q ss_pred ChhhhccccccEEeEeccCCCCcCCC--CCCCCccceeeccCCC
Q 001993 808 SDWMLSLAKLRVLTLRFCNECECLPP--LGKLPCLETLVLEGMS 849 (985)
Q Consensus 808 p~~~~~l~~L~~L~L~~~~~~~~l~~--l~~l~~L~~L~L~~~~ 849 (985)
|.++..+++|+.|+|++|. ++.+|. ++.+++|++|+|++++
T Consensus 270 ~~~l~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 270 MKLLNQISGLLELEFSRNQ-LKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp HHHHHTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred HHHHhcccCCCEEECCCCC-CCccCHHHHhcCCCCCEEEeeCCC
Confidence 7788899999999999995 556774 5899999999999976
No 60
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.63 E-value=3.9e-15 Score=169.67 Aligned_cols=301 Identities=13% Similarity=0.043 Sum_probs=183.6
Q ss_pred ceecchhhHHHHHHHH-hcCCCCCccccccCCCCCCCCCEEEEE--EccCCchHHHHHHHHhcchhhh---ccCC-ceEE
Q 001993 179 EIRGRNHLQNKVASLL-MSGSESSTASAASSSQVPTQRPTIISI--TGMGGIGKTTLAKLIFNDNEVR---NHFN-EKIW 251 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L-~~~~~~~~~~~~~~~~~~~~~~~vv~I--~G~gGiGKTtLa~~v~~~~~~~---~~f~-~~~w 251 (985)
.++||+.++++|.+++ ..... . +......+.| +|++|+||||||+.+++..... ..|. .++|
T Consensus 23 ~l~gR~~el~~l~~~l~~~~~~---------~--~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~ 91 (412)
T 1w5s_A 23 ELRVRRGEAEALARIYLNRLLS---------G--AGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAY 91 (412)
T ss_dssp SCSSSCHHHHHHHHHHHHHHHT---------S--SCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCChHHHHHHHHHHHhHHHhc---------C--CCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEE
Confidence 7999999999999998 53210 0 0023456777 9999999999999999842211 0123 3678
Q ss_pred EEeCCCCCHHHHHHHHHHHhcCCCC-CCCCHHHHHHHHHHHhc--CceEEEEecCCCCCC------cccHHHHHhhhcCC
Q 001993 252 VCVSEPFDDIRIAKAILESLKGSAT-NAVESETVLKQLRESIE--GKKFFLVLDDVWTEE------PQNWEQLLGCLRCG 322 (985)
Q Consensus 252 v~~s~~~~~~~~~~~i~~~l~~~~~-~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~------~~~~~~l~~~l~~~ 322 (985)
+++....+...++..++.+++.... ...+.+.+...+.+.+. +++++|||||+|... ...+..+...+...
T Consensus 92 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~ 171 (412)
T 1w5s_A 92 VNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEI 171 (412)
T ss_dssp EEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHS
T ss_pred EECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhc
Confidence 8877778889999999999865432 23345566666776664 789999999997522 23344344433321
Q ss_pred ---C--CCcEEEEEcCchhhHHhhc--------CcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHH
Q 001993 323 ---S--KESRILVTTRNEKVAIAIG--------TTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVS 389 (985)
Q Consensus 323 ---~--~gs~iivTtR~~~v~~~~~--------~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~ 389 (985)
+ ....||+||+...+...+. ... ..+.+.+++.++++++|...+......... ..+....|++
T Consensus 172 ~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~-~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~---~~~~~~~i~~ 247 (412)
T 1w5s_A 172 PSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIG-FKLHLPAYKSRELYTILEQRAELGLRDTVW---EPRHLELISD 247 (412)
T ss_dssp CCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCS-EEEECCCCCHHHHHHHHHHHHHHHBCTTSC---CHHHHHHHHH
T ss_pred ccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcC-CeeeeCCCCHHHHHHHHHHHHHhcCCCCCC---ChHHHHHHHH
Confidence 2 3455888888665432221 111 238999999999999997654211000011 1356778999
Q ss_pred hcC------CChhHHHHHHhhh---h--cC---CChHHHHHHHHhhhhhhhcccccc-chhhhcccCCCCcchhHHHhhh
Q 001993 390 KCK------GLPLAVKTLGSLL---R--FK---GKIEEWQRVLENELWELEELDEGL-LGPLLLSYLDLPPPLKKCFSYC 454 (985)
Q Consensus 390 ~c~------GlPLai~~~~~~L---~--~~---~~~~~w~~~~~~~~~~~~~~~~~~-~~~l~~sy~~L~~~~k~cfl~~ 454 (985)
.|+ |.|..+..+.... . .. -+.+.+...+... . ...+.-++..||++.+.++..+
T Consensus 248 ~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~----------~~~~~~~~~l~~l~~~~~~~l~ai 317 (412)
T 1w5s_A 248 VYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSEN----------EAASIQTHELEALSIHELIILRLI 317 (412)
T ss_dssp HHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC----------------CCSSSSSCHHHHHHHHHH
T ss_pred HHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH----------hccchHHHHHHcCCHHHHHHHHHH
Confidence 999 9997665554322 1 11 1233333333221 1 2345567788999999999988
Q ss_pred ccCC--CCcccChhHHHHHHh--h-cCcccccCccchhhHhHHHHHHHhhccccccc
Q 001993 455 AIFP--KDSRLEKDKLIRLWM--A-QDYLKVKGREDMVVGEGYFENLAMRSLFQDFE 506 (985)
Q Consensus 455 a~fp--~~~~i~~~~Li~~Wi--a-eg~i~~~~~~~~~~~~~~~~~L~~~~ll~~~~ 506 (985)
+.+. .+..++...+...+. + .-. . ...........++++|...+++....
T Consensus 318 a~l~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~l~~L~~~gli~~~~ 372 (412)
T 1w5s_A 318 AEATLGGMEWINAGLLRQRYEDASLTMY-N-VKPRGYTQYHIYLKHLTSLGLVDAKP 372 (412)
T ss_dssp HHHHHTTCSSBCHHHHHHHHHHHHHHHS-C-CCCCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHhhc-C-CCCCCHHHHHHHHHHHHhCCCEEeec
Confidence 8754 233455555554442 2 111 0 01112244567899999999998654
No 61
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.62 E-value=1.5e-15 Score=175.13 Aligned_cols=219 Identities=22% Similarity=0.220 Sum_probs=152.7
Q ss_pred CCceEEEccCcCCcchhhhHHHhhccCCcceeecCC--CCCCCC-cccccCCCCCeEecCCCCCccccchh-hcCCCCCc
Q 001993 577 TKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL--PVGQIP-KGIKKLIHLRYLALGENPWIKELPEA-LCELCNLQ 652 (985)
Q Consensus 577 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~--~~~~lp-~~i~~l~~Lr~L~L~~~~~i~~lP~~-i~~L~~L~ 652 (985)
++++.|+++++.. ....+..|.++++|++|+++ .+..++ ..+..+.+|++|+|++|. +..+|.. +..+++|+
T Consensus 75 ~~l~~L~L~~n~i---~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~ 150 (452)
T 3zyi_A 75 SNTRYLNLMENNI---QMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW-LTVIPSGAFEYLSKLR 150 (452)
T ss_dssp TTCSEEECCSSCC---CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSBCCTTTSSSCTTCC
T ss_pred CCccEEECcCCcC---ceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc-CCccChhhhcccCCCC
Confidence 6788888888864 33345567888888888888 455554 567888888888888888 7777764 77788888
Q ss_pred EeeccCcccccccch-hhhhccccceeecccccccccccCCC-cCCCCCCCCccCceEecCCCcccccCCchhhhccccC
Q 001993 653 TLDVSLCHYLKRLPE-RIGQLINLRHLMNSKEEWSRLSYMPR-GMERLTGLRTLGAFVASGGKSSKACSSLKSLNKLKHL 730 (985)
Q Consensus 653 ~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~n~~~~l~~~p~-~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L 730 (985)
+|+|++|. +..+|. .+..+++|++|+++ +|..+..+|. .+.++++|+.|++..+.... +..
T Consensus 151 ~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~--~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-------~~~------- 213 (452)
T 3zyi_A 151 ELWLRNNP-IESIPSYAFNRVPSLMRLDLG--ELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-------MPN------- 213 (452)
T ss_dssp EEECCSCC-CCEECTTTTTTCTTCCEEECC--CCTTCCEECTTTTTTCTTCCEEECTTSCCSS-------CCC-------
T ss_pred EEECCCCC-cceeCHhHHhcCCcccEEeCC--CCCCccccChhhccCCCCCCEEECCCCcccc-------ccc-------
Confidence 88888887 666665 56788888888888 4455566665 36777777777765332221 111
Q ss_pred cceeeecccccccCCCCcchhhhcccccccccccEEEEEcCCCCcchhHhhhcCCCCCCCCCeEEEeeccCCCCCCCChh
Q 001993 731 EGSLTLRGLGNERDLGDDNDDEKVDLKSKMKLVDLHLRFDSTTKTKDHRVVLECLQPPSSLEKLGIYGYAGDTISPTSDW 810 (985)
Q Consensus 731 ~~~L~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~ 810 (985)
+..+++|+.|+++++. ........+..+++|+.|++++|....+. |..
T Consensus 214 -------------------------~~~l~~L~~L~Ls~N~-----l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~ 261 (452)
T 3zyi_A 214 -------------------------LTPLVGLEELEMSGNH-----FPEIRPGSFHGLSSLKKLWVMNSQVSLIE--RNA 261 (452)
T ss_dssp -------------------------CTTCTTCCEEECTTSC-----CSEECGGGGTTCTTCCEEECTTSCCCEEC--TTT
T ss_pred -------------------------ccccccccEEECcCCc-----CcccCcccccCccCCCEEEeCCCcCceEC--HHH
Confidence 2223345555554433 11112344566788999999988876664 667
Q ss_pred hhccccccEEeEeccCCCCcCCC--CCCCCccceeeccCCC
Q 001993 811 MLSLAKLRVLTLRFCNECECLPP--LGKLPCLETLVLEGMS 849 (985)
Q Consensus 811 ~~~l~~L~~L~L~~~~~~~~l~~--l~~l~~L~~L~L~~~~ 849 (985)
+..+++|+.|+|++|. ++.+|. +..+++|+.|+|++++
T Consensus 262 ~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 262 FDGLASLVELNLAHNN-LSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TTTCTTCCEEECCSSC-CSCCCTTSSTTCTTCCEEECCSSC
T ss_pred hcCCCCCCEEECCCCc-CCccChHHhccccCCCEEEccCCC
Confidence 7889999999999994 455553 6789999999999865
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.61 E-value=2.6e-16 Score=172.16 Aligned_cols=108 Identities=21% Similarity=0.206 Sum_probs=77.9
Q ss_pred hhhHHHhhccCCcceeecCC--CCCCCC-cccccCCCCCeEecCCCCCccccchhhcCCCCCcEeeccCcccccccchhh
Q 001993 593 RIALSKLFDRLTCLRSIDGL--PVGQIP-KGIKKLIHLRYLALGENPWIKELPEALCELCNLQTLDVSLCHYLKRLPERI 669 (985)
Q Consensus 593 ~~~~~~~~~~l~~Lr~L~l~--~~~~lp-~~i~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lP~~i 669 (985)
...+...+..+++|+.|+++ .+..++ ..+..+++|++|+|++|. +..+++ +..+++|++|++++|. +..+|.
T Consensus 23 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~l~~L~~L~Ls~n~-l~~l~~-- 97 (317)
T 3o53_A 23 KQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNNY-VQELLV-- 97 (317)
T ss_dssp HHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSC-CEEEEE-ETTCTTCCEEECCSSE-EEEEEE--
T ss_pred hhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCc-CCcchh-hhhcCCCCEEECcCCc-cccccC--
Confidence 44455667777889999988 555554 578889999999999988 776665 8889999999999887 766653
Q ss_pred hhccccceeecccccccccccCCCcCCCCCCCCccCceEecCC
Q 001993 670 GQLINLRHLMNSKEEWSRLSYMPRGMERLTGLRTLGAFVASGG 712 (985)
Q Consensus 670 ~~L~~L~~L~l~~n~~~~l~~~p~~i~~L~~L~~L~~~~~~~~ 712 (985)
+++|++|++++|.. ..++. ..+++|++|++..+...
T Consensus 98 --~~~L~~L~l~~n~l---~~~~~--~~~~~L~~L~l~~N~l~ 133 (317)
T 3o53_A 98 --GPSIETLHAANNNI---SRVSC--SRGQGKKNIYLANNKIT 133 (317)
T ss_dssp --CTTCCEEECCSSCC---SEEEE--CCCSSCEEEECCSSCCC
T ss_pred --CCCcCEEECCCCcc---CCcCc--cccCCCCEEECCCCCCC
Confidence 48899999986544 33332 23567777777654433
No 63
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.61 E-value=2.3e-18 Score=199.68 Aligned_cols=368 Identities=18% Similarity=0.098 Sum_probs=218.5
Q ss_pred CCeEEEEEEcCCCCCccCCCccccCCCCceEEEccCcCCcch-hhhHHHhhccCCcceeecCCC--CCC-CCccc-ccCC
Q 001993 551 WKARHLMITGETRSEMVPFPSMVYDETKLRSLVLDQRLSFKP-RIALSKLFDRLTCLRSIDGLP--VGQ-IPKGI-KKLI 625 (985)
Q Consensus 551 ~~~r~l~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~-~~~~~~~~~~l~~Lr~L~l~~--~~~-lp~~i-~~l~ 625 (985)
..++++.+.++...... ....+..+++|++|.++++..... ...++..+..+++|++|+++. +.. .+..+ ..+.
T Consensus 3 ~~l~~L~Ls~~~l~~~~-~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDAR-WAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp EEEEEEEEESCCCCHHH-HHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred ccceehhhhhcccCchh-HHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 45678888877663221 222356788999999998864211 123566788889999999983 222 12222 2344
Q ss_pred ----CCCeEecCCCCCcc-----ccchhhcCCCCCcEeeccCcccccc-cchhhhh-----ccccceeeccccccccc--
Q 001993 626 ----HLRYLALGENPWIK-----ELPEALCELCNLQTLDVSLCHYLKR-LPERIGQ-----LINLRHLMNSKEEWSRL-- 688 (985)
Q Consensus 626 ----~Lr~L~L~~~~~i~-----~lP~~i~~L~~L~~L~l~~~~~l~~-lP~~i~~-----L~~L~~L~l~~n~~~~l-- 688 (985)
+|++|+|++|. +. .+|..+..+++|++|++++|. +.. .+..+.. +++|++|++++|.....
T Consensus 82 ~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 159 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC 159 (461)
T ss_dssp STTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH
T ss_pred hCCCceeEEEccCCC-CCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHH
Confidence 69999999998 66 568889999999999999998 432 2333332 45799999996544321
Q ss_pred ccCCCcCCCCCCCCccCceEecCCCcccccCCc-hhhh-ccccCcceeeecccccccCCCCcchhhhcccccccccccEE
Q 001993 689 SYMPRGMERLTGLRTLGAFVASGGKSSKACSSL-KSLN-KLKHLEGSLTLRGLGNERDLGDDNDDEKVDLKSKMKLVDLH 766 (985)
Q Consensus 689 ~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l-~~L~-~L~~L~~~L~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~ 766 (985)
..++..+..+++|++|++..+..... +...+ ..+. .+.+|+ .|.+.+.. +.. .........+..+++|+.|+
T Consensus 160 ~~l~~~l~~~~~L~~L~L~~n~i~~~--~~~~l~~~l~~~~~~L~-~L~L~~n~-l~~--~~~~~l~~~l~~~~~L~~L~ 233 (461)
T 1z7x_W 160 EPLASVLRAKPDFKELTVSNNDINEA--GVRVLCQGLKDSPCQLE-ALKLESCG-VTS--DNCRDLCGIVASKASLRELA 233 (461)
T ss_dssp HHHHHHHHHCTTCCEEECCSSBCHHH--HHHHHHHHHHHSCCCCC-EEECTTSC-CBT--THHHHHHHHHHHCTTCCEEE
T ss_pred HHHHHHHhhCCCCCEEECcCCCcchH--HHHHHHHHHhcCCCCce-EEEccCCC-CcH--HHHHHHHHHHHhCCCccEEe
Confidence 13455567788999998875543221 11011 1111 122444 55554431 111 00011233456778999999
Q ss_pred EEEcCCCCcchhHhhhc-CCCCCCCCCeEEEeeccCCCCC--CCChhhhccccccEEeEeccCCCCc----CCC--CCCC
Q 001993 767 LRFDSTTKTKDHRVVLE-CLQPPSSLEKLGIYGYAGDTIS--PTSDWMLSLAKLRVLTLRFCNECEC----LPP--LGKL 837 (985)
Q Consensus 767 l~~~~~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~--~~p~~~~~l~~L~~L~L~~~~~~~~----l~~--l~~l 837 (985)
++++.-. ......+.. ...++++|+.|++++|...... .++..+..+++|+.|+|++|..... +.. ....
T Consensus 234 Ls~n~l~-~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~ 312 (461)
T 1z7x_W 234 LGSNKLG-DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPG 312 (461)
T ss_dssp CCSSBCH-HHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTT
T ss_pred ccCCcCC-hHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCC
Confidence 9876511 001111112 2335789999999998765510 0156667789999999999853211 111 1234
Q ss_pred CccceeeccCCCCceEeCCcccCCchhhhhhhhhhhcccccccCCCCCccceeeccccccccccccccccCcc-cccccc
Q 001993 838 PCLETLVLEGMSSVKRLGNGFLGIAEDHQARADQAETASSIIRDTAFPRLETLEFLDMEKWEEWDDCEIAGGK-TIMPRL 916 (985)
Q Consensus 838 ~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~-~~lp~L 916 (985)
++|+.|+|++|. +...+...+.. ....+++|++|+++++ .+.+.......... ...++|
T Consensus 313 ~~L~~L~L~~n~-l~~~~~~~l~~------------------~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L 372 (461)
T 1z7x_W 313 CQLESLWVKSCS-FTAACCSHFSS------------------VLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVL 372 (461)
T ss_dssp CCCCEEECTTSC-CBGGGHHHHHH------------------HHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCC
T ss_pred ccceeeEcCCCC-CchHHHHHHHH------------------HHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCce
Confidence 799999999876 32211000000 0124688999999886 34332211000000 126789
Q ss_pred cceeecccccCC-----CCCCCCCCCCCcCeEEecCch
Q 001993 917 RHLSICWSPELK-----ALPDYILGSTSLDKLLIYYSR 949 (985)
Q Consensus 917 ~~L~i~~c~~L~-----~lp~~~~~l~~L~~L~i~~c~ 949 (985)
++|++++| .++ .+|..+..+++|++|++++|+
T Consensus 373 ~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 373 RVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp CEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred EEEECCCC-CCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 99999988 455 567667778899999999886
No 64
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.61 E-value=3.5e-15 Score=176.39 Aligned_cols=129 Identities=20% Similarity=0.176 Sum_probs=90.6
Q ss_pred CeEEEEEEcCCCCCccCCCccccCCCCceEEEccCcCCcchhhhHHHhhccCCcceeecCC--CCCCCCcccccCCCCCe
Q 001993 552 KARHLMITGETRSEMVPFPSMVYDETKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL--PVGQIPKGIKKLIHLRY 629 (985)
Q Consensus 552 ~~r~l~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~--~~~~lp~~i~~l~~Lr~ 629 (985)
.++.+.+.++.+. .+|..+. ++|+.|.+++|... . ++. .+++|++|+++ .+..+|. .+++|++
T Consensus 41 ~l~~L~ls~n~L~---~lp~~l~--~~L~~L~L~~N~l~---~-lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~ 105 (622)
T 3g06_A 41 GNAVLNVGESGLT---TLPDCLP--AHITTLVIPDNNLT---S-LPA---LPPELRTLEVSGNQLTSLPV---LPPGLLE 105 (622)
T ss_dssp CCCEEECCSSCCS---CCCSCCC--TTCSEEEECSCCCS---C-CCC---CCTTCCEEEECSCCCSCCCC---CCTTCCE
T ss_pred CCcEEEecCCCcC---ccChhhC--CCCcEEEecCCCCC---C-CCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCE
Confidence 4677888877773 3444443 78999999988642 1 222 56788888888 5667776 6788888
Q ss_pred EecCCCCCccccchhhcCCCCCcEeeccCcccccccchhhhhccccceeecccccccccccCCCcCCCCCCCCccCceEe
Q 001993 630 LALGENPWIKELPEALCELCNLQTLDVSLCHYLKRLPERIGQLINLRHLMNSKEEWSRLSYMPRGMERLTGLRTLGAFVA 709 (985)
Q Consensus 630 L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~n~~~~l~~~p~~i~~L~~L~~L~~~~~ 709 (985)
|++++|. +..+|. .+.+|++|++++|. +..+|.. +++|++|++++|.. ..+|.. +.+|+.|++..+
T Consensus 106 L~Ls~N~-l~~l~~---~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N~l---~~l~~~---~~~L~~L~L~~N 171 (622)
T 3g06_A 106 LSIFSNP-LTHLPA---LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQL---ASLPAL---PSELCKLWAYNN 171 (622)
T ss_dssp EEECSCC-CCCCCC---CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSCC---SCCCCC---CTTCCEEECCSS
T ss_pred EECcCCc-CCCCCC---CCCCcCEEECCCCC-CCcCCCC---CCCCCEEECcCCcC---CCcCCc---cCCCCEEECCCC
Confidence 8888887 888887 67888888888887 7778764 47888888885543 445543 345666655433
No 65
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.61 E-value=1.9e-15 Score=173.58 Aligned_cols=219 Identities=24% Similarity=0.271 Sum_probs=148.7
Q ss_pred CCceEEEccCcCCcchhhhHHHhhccCCcceeecCC--CCCCCC-cccccCCCCCeEecCCCCCccccch-hhcCCCCCc
Q 001993 577 TKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL--PVGQIP-KGIKKLIHLRYLALGENPWIKELPE-ALCELCNLQ 652 (985)
Q Consensus 577 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~--~~~~lp-~~i~~l~~Lr~L~L~~~~~i~~lP~-~i~~L~~L~ 652 (985)
++++.|+++++.. ....+..|.++++|++|+++ .+..++ ..+..+.+|++|+|++|. +..+|. .+..+++|+
T Consensus 64 ~~l~~L~L~~n~i---~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~ 139 (440)
T 3zyj_A 64 TNTRLLNLHENQI---QIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR-LTTIPNGAFVYLSKLK 139 (440)
T ss_dssp TTCSEEECCSCCC---CEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC-CSSCCTTTSCSCSSCC
T ss_pred CCCcEEEccCCcC---CeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc-CCeeCHhHhhccccCc
Confidence 6788888888764 23334557788888888887 455554 567788888888888887 777775 577888888
Q ss_pred EeeccCcccccccch-hhhhccccceeecccccccccccCCC-cCCCCCCCCccCceEecCCCcccccCCchhhhccccC
Q 001993 653 TLDVSLCHYLKRLPE-RIGQLINLRHLMNSKEEWSRLSYMPR-GMERLTGLRTLGAFVASGGKSSKACSSLKSLNKLKHL 730 (985)
Q Consensus 653 ~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~n~~~~l~~~p~-~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L 730 (985)
+|+|++|. +..+|. .+..+++|++|+++ ++..+..+|. .+.++++|+.|++..+.... +..
T Consensus 140 ~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~--~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-------~~~------- 202 (440)
T 3zyj_A 140 ELWLRNNP-IESIPSYAFNRIPSLRRLDLG--ELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-------IPN------- 202 (440)
T ss_dssp EEECCSCC-CCEECTTTTTTCTTCCEEECC--CCTTCCEECTTTTTTCSSCCEEECTTSCCSS-------CCC-------
T ss_pred eeeCCCCc-ccccCHHHhhhCcccCEeCCC--CCCCcceeCcchhhcccccCeecCCCCcCcc-------ccc-------
Confidence 88888887 666654 56778888888888 3444555554 46777777777664332221 111
Q ss_pred cceeeecccccccCCCCcchhhhcccccccccccEEEEEcCCCCcchhHhhhcCCCCCCCCCeEEEeeccCCCCCCCChh
Q 001993 731 EGSLTLRGLGNERDLGDDNDDEKVDLKSKMKLVDLHLRFDSTTKTKDHRVVLECLQPPSSLEKLGIYGYAGDTISPTSDW 810 (985)
Q Consensus 731 ~~~L~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~ 810 (985)
+..+++|+.|+|++|. ........+..+++|+.|++++|....+. |..
T Consensus 203 -------------------------~~~l~~L~~L~Ls~N~-----l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~ 250 (440)
T 3zyj_A 203 -------------------------LTPLIKLDELDLSGNH-----LSAIRPGSFQGLMHLQKLWMIQSQIQVIE--RNA 250 (440)
T ss_dssp -------------------------CTTCSSCCEEECTTSC-----CCEECTTTTTTCTTCCEEECTTCCCCEEC--TTS
T ss_pred -------------------------cCCCcccCEEECCCCc-----cCccChhhhccCccCCEEECCCCceeEEC--hhh
Confidence 2223345555554433 11112345566788899999888877664 567
Q ss_pred hhccccccEEeEeccCCCCcCCC--CCCCCccceeeccCCC
Q 001993 811 MLSLAKLRVLTLRFCNECECLPP--LGKLPCLETLVLEGMS 849 (985)
Q Consensus 811 ~~~l~~L~~L~L~~~~~~~~l~~--l~~l~~L~~L~L~~~~ 849 (985)
+..+++|+.|+|++|. ++.+|. +..+++|+.|+|++++
T Consensus 251 ~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 251 FDNLQSLVEINLAHNN-LTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp STTCTTCCEEECTTSC-CCCCCTTTTSSCTTCCEEECCSSC
T ss_pred hcCCCCCCEEECCCCC-CCccChhHhccccCCCEEEcCCCC
Confidence 7788999999999984 455553 6788999999998865
No 66
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.60 E-value=3e-15 Score=163.06 Aligned_cols=223 Identities=20% Similarity=0.105 Sum_probs=144.7
Q ss_pred CCceEEEccCcCCcchhhhHHHhhccCCcceeecCC--CCCCC---CcccccCCCCCeEecCCCCCccccchhhcCCCCC
Q 001993 577 TKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL--PVGQI---PKGIKKLIHLRYLALGENPWIKELPEALCELCNL 651 (985)
Q Consensus 577 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~--~~~~l---p~~i~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L 651 (985)
++++.|.++++.. ....+..|.++++|++|+++ .+..+ |..+..+.+|++|++++|. +..+|..+..+++|
T Consensus 28 ~~l~~L~L~~n~l---~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~~~l~~L 103 (306)
T 2z66_A 28 SSATRLELESNKL---QSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQL 103 (306)
T ss_dssp TTCCEEECCSSCC---CCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEEETCTTC
T ss_pred CCCCEEECCCCcc---CccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc-cccChhhcCCCCCC
Confidence 5778888877753 22233446777778888777 33333 4556667788888888887 77777777788888
Q ss_pred cEeeccCcccccccch--hhhhccccceeecccccccccccCCCcCCCCCCCCccCceEecCCCcccccCCchhhhcccc
Q 001993 652 QTLDVSLCHYLKRLPE--RIGQLINLRHLMNSKEEWSRLSYMPRGMERLTGLRTLGAFVASGGKSSKACSSLKSLNKLKH 729 (985)
Q Consensus 652 ~~L~l~~~~~l~~lP~--~i~~L~~L~~L~l~~n~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~ 729 (985)
++|++++|. +..+|. .+..+++|++|++++|... ...|..++.+++|++|++..+.....
T Consensus 104 ~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~--------------- 165 (306)
T 2z66_A 104 EHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTR--VAFNGIFNGLSSLEVLKMAGNSFQEN--------------- 165 (306)
T ss_dssp CEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCE--ECSTTTTTTCTTCCEEECTTCEEGGG---------------
T ss_pred CEEECCCCc-ccccccchhhhhccCCCEEECCCCcCC--ccchhhcccCcCCCEEECCCCccccc---------------
Confidence 888888777 666553 5677788888888754432 23344566777777776543221110
Q ss_pred CcceeeecccccccCCCCcchhhhcccccccccccEEEEEcCCCCcchhHhhhcCCCCCCCCCeEEEeeccCCCCCCCCh
Q 001993 730 LEGSLTLRGLGNERDLGDDNDDEKVDLKSKMKLVDLHLRFDSTTKTKDHRVVLECLQPPSSLEKLGIYGYAGDTISPTSD 809 (985)
Q Consensus 730 L~~~L~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~ 809 (985)
.....+..+++|+.|+++++. .....+..+..+++|+.|++++|....+. +.
T Consensus 166 ---------------------~~~~~~~~l~~L~~L~Ls~n~-----l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~ 217 (306)
T 2z66_A 166 ---------------------FLPDIFTELRNLTFLDLSQCQ-----LEQLSPTAFNSLSSLQVLNMSHNNFFSLD--TF 217 (306)
T ss_dssp ---------------------EECSCCTTCTTCCEEECTTSC-----CCEECTTTTTTCTTCCEEECTTSCCSBCC--SG
T ss_pred ---------------------cchhHHhhCcCCCEEECCCCC-----cCCcCHHHhcCCCCCCEEECCCCccCccC--hh
Confidence 000112333455555554433 11112344566789999999999877763 44
Q ss_pred hhhccccccEEeEeccCCCCcCC-CCCCCC-ccceeeccCCC
Q 001993 810 WMLSLAKLRVLTLRFCNECECLP-PLGKLP-CLETLVLEGMS 849 (985)
Q Consensus 810 ~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~-~L~~L~L~~~~ 849 (985)
.+..+++|+.|+|++|......| .+..++ +|+.|+|++++
T Consensus 218 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 218 PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp GGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred hccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 67789999999999996555444 477885 99999999876
No 67
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.59 E-value=8.3e-17 Score=192.97 Aligned_cols=373 Identities=13% Similarity=0.010 Sum_probs=196.6
Q ss_pred CCeEEEEEEcCCCCCccCCCccccC-CCC-ceEEEccCcCCcchhhhHHHhhccCCcceeecCCCCCC-------CCccc
Q 001993 551 WKARHLMITGETRSEMVPFPSMVYD-ETK-LRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGLPVGQ-------IPKGI 621 (985)
Q Consensus 551 ~~~r~l~l~~~~~~~~~~~~~~~~~-~~~-Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~-------lp~~i 621 (985)
..++++.+.++...... ...+.. ++. |+.|.+.++... ....++....++++|++|+++.... ++..+
T Consensus 112 ~~L~~L~L~~~~i~~~~--~~~l~~~~~~~L~~L~L~~~~~~-~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~ 188 (592)
T 3ogk_B 112 RQLKSVHFRRMIVSDLD--LDRLAKARADDLETLKLDKCSGF-TTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELA 188 (592)
T ss_dssp TTCCEEEEESCBCCHHH--HHHHHHHHGGGCCEEEEESCEEE-EHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHH
T ss_pred CCCCeEEeeccEecHHH--HHHHHHhccccCcEEECcCCCCc-CHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHH
Confidence 35677777776542111 112222 334 999999887521 1233555567889999999984321 33445
Q ss_pred ccCCCCCeEecCCCCCcc-----ccchhhcCCCCCcEeeccCcccccccchhhhhccccceeecccccc-cccccCCCcC
Q 001993 622 KKLIHLRYLALGENPWIK-----ELPEALCELCNLQTLDVSLCHYLKRLPERIGQLINLRHLMNSKEEW-SRLSYMPRGM 695 (985)
Q Consensus 622 ~~l~~Lr~L~L~~~~~i~-----~lP~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~n~~-~~l~~~p~~i 695 (985)
..+++|++|++++|. +. .++..+..+++|++|++++|. +..+|..+..+++|++|+++.... ......+..+
T Consensus 189 ~~~~~L~~L~L~~n~-~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l 266 (592)
T 3ogk_B 189 QHNTSLEVLNFYMTE-FAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNL 266 (592)
T ss_dssp HHCCCCCEEECTTCC-CSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCC
T ss_pred hcCCCccEEEeeccC-CCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccchHHHHHHh
Confidence 678889999999887 53 566667788999999999987 777888888999999999873111 0112334556
Q ss_pred CCCCCCCccCceEecCCCcccccCCchhhhccccCcceeeecccccccCCCCcchhhhcccccccccccEEEEEcCCCCc
Q 001993 696 ERLTGLRTLGAFVASGGKSSKACSSLKSLNKLKHLEGSLTLRGLGNERDLGDDNDDEKVDLKSKMKLVDLHLRFDSTTKT 775 (985)
Q Consensus 696 ~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 775 (985)
+.+++|+.|++..+.... ....+..+++|+ .|.+.... +. .......+..+++|+.|.+..+.
T Consensus 267 ~~~~~L~~L~l~~~~~~~---l~~~~~~~~~L~----~L~Ls~~~-l~-----~~~~~~~~~~~~~L~~L~L~~~~---- 329 (592)
T 3ogk_B 267 VFPRKLCRLGLSYMGPNE---MPILFPFAAQIR----KLDLLYAL-LE-----TEDHCTLIQKCPNLEVLETRNVI---- 329 (592)
T ss_dssp CCCTTCCEEEETTCCTTT---GGGGGGGGGGCC----EEEETTCC-CC-----HHHHHHHHTTCTTCCEEEEEGGG----
T ss_pred hccccccccCccccchhH---HHHHHhhcCCCc----EEecCCCc-CC-----HHHHHHHHHhCcCCCEEeccCcc----
Confidence 777777777654332221 111223333333 45554432 11 11122234566677777776221
Q ss_pred chhHhhhcCCCCCCCCCeEEEee----------ccCCCCCCCChhhhccccccEEeEeccCCCCc--CCCCCC-CCccce
Q 001993 776 KDHRVVLECLQPPSSLEKLGIYG----------YAGDTISPTSDWMLSLAKLRVLTLRFCNECEC--LPPLGK-LPCLET 842 (985)
Q Consensus 776 ~~~~~~~~~l~~~~~L~~L~l~~----------~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~--l~~l~~-l~~L~~ 842 (985)
....+......+++|+.|++.+ +.......++.....+++|++|++..+ .++. +..++. +++|+.
T Consensus 330 -~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~-~l~~~~~~~l~~~~~~L~~ 407 (592)
T 3ogk_B 330 -GDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVS-DITNESLESIGTYLKNLCD 407 (592)
T ss_dssp -HHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEES-CCCHHHHHHHHHHCCSCCE
T ss_pred -CHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecC-CccHHHHHHHHhhCCCCcE
Confidence 1111111123345677777763 322211000122234666666666333 2221 112222 566666
Q ss_pred eeccC---CCCceEeCCc------ccCCchhhhhhhhh--hh-ccccc-ccCCCCCccceeeccccccccccccccccCc
Q 001993 843 LVLEG---MSSVKRLGNG------FLGIAEDHQARADQ--AE-TASSI-IRDTAFPRLETLEFLDMEKWEEWDDCEIAGG 909 (985)
Q Consensus 843 L~L~~---~~~l~~l~~~------~~~~~~~~~~~~~~--~~-~~~~~-~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~ 909 (985)
|++.+ |+.++..|.+ +.....+..+.+.. +. +.... .-...+|+|++|+++++. ++...... .
T Consensus 408 L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~---~ 483 (592)
T 3ogk_B 408 FRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLME---F 483 (592)
T ss_dssp EEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHHHH---H
T ss_pred EEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHHHHH---H
Confidence 66653 2333222110 00000000000000 00 00000 001246788888888754 33211100 1
Q ss_pred ccccccccceeecccccCCC--CCCCCCCCCCcCeEEecCchhhhh
Q 001993 910 KTIMPRLRHLSICWSPELKA--LPDYILGSTSLDKLLIYYSRHLNN 953 (985)
Q Consensus 910 ~~~lp~L~~L~i~~c~~L~~--lp~~~~~l~~L~~L~i~~c~~l~~ 953 (985)
...+++|++|+|++|+ ++. ++....++++|+.|+|++|. +++
T Consensus 484 ~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~ 527 (592)
T 3ogk_B 484 SRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASM 527 (592)
T ss_dssp HTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCT
T ss_pred HhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCH
Confidence 2367999999999997 543 34444568899999999997 543
No 68
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.58 E-value=5.5e-17 Score=194.54 Aligned_cols=306 Identities=15% Similarity=0.040 Sum_probs=150.4
Q ss_pred HHhhccCCcceeecCC--CCCCCCcccccCCCCCeEecCCCCCc---cccchhhcCCCCCcEeeccCcccccccchhhhh
Q 001993 597 SKLFDRLTCLRSIDGL--PVGQIPKGIKKLIHLRYLALGENPWI---KELPEALCELCNLQTLDVSLCHYLKRLPERIGQ 671 (985)
Q Consensus 597 ~~~~~~l~~Lr~L~l~--~~~~lp~~i~~l~~Lr~L~L~~~~~i---~~lP~~i~~L~~L~~L~l~~~~~l~~lP~~i~~ 671 (985)
+..+.++++|+.|+++ .+..+|..+..+++|++|+++++... ...+..+..+++|+.|+++++. ...+|..+..
T Consensus 213 ~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~ 291 (592)
T 3ogk_B 213 ETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPF 291 (592)
T ss_dssp HHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGG
T ss_pred HHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHHHhh
Confidence 3334444444444444 22233444444444444444432111 1222334444555555555443 4556666667
Q ss_pred ccccceeecccccccccccCCCcCCCCCCCCccCceEecCCCcccccCCchhh-hccccCcceeeecc----------cc
Q 001993 672 LINLRHLMNSKEEWSRLSYMPRGMERLTGLRTLGAFVASGGKSSKACSSLKSL-NKLKHLEGSLTLRG----------LG 740 (985)
Q Consensus 672 L~~L~~L~l~~n~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L-~~L~~L~~~L~i~~----------l~ 740 (985)
+++|++|++++|... ...++..++.+++|++|++.. .... . .+..+ ..+++|+ .|.+.. +.
T Consensus 292 ~~~L~~L~Ls~~~l~-~~~~~~~~~~~~~L~~L~L~~-~~~~---~--~l~~~~~~~~~L~-~L~L~~g~~~~~~~~~~~ 363 (592)
T 3ogk_B 292 AAQIRKLDLLYALLE-TEDHCTLIQKCPNLEVLETRN-VIGD---R--GLEVLAQYCKQLK-RLRIERGADEQGMEDEEG 363 (592)
T ss_dssp GGGCCEEEETTCCCC-HHHHHHHHTTCTTCCEEEEEG-GGHH---H--HHHHHHHHCTTCC-EEEEECCCCSSTTSSTTC
T ss_pred cCCCcEEecCCCcCC-HHHHHHHHHhCcCCCEEeccC-ccCH---H--HHHHHHHhCCCCC-EEEeecCccccccccccC
Confidence 777777777743311 111222356677777776651 1111 0 11111 2233333 444442 21
Q ss_pred cccCCCCcchhhhcccccccccccEEEEEcCCCCcchhHhhhcCCC-CCCCCCeEEEeecc----CCCCC---CCChhhh
Q 001993 741 NERDLGDDNDDEKVDLKSKMKLVDLHLRFDSTTKTKDHRVVLECLQ-PPSSLEKLGIYGYA----GDTIS---PTSDWML 812 (985)
Q Consensus 741 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~----~~~~~---~~p~~~~ 812 (985)
.+.+ .........+++|+.|.+..+. .....+..+. .+++|+.|+++++. ....+ .++..+.
T Consensus 364 ~~~~-----~~~~~l~~~~~~L~~L~l~~~~-----l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~ 433 (592)
T 3ogk_B 364 LVSQ-----RGLIALAQGCQELEYMAVYVSD-----ITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLI 433 (592)
T ss_dssp CCCH-----HHHHHHHHHCTTCSEEEEEESC-----CCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHH
T ss_pred ccCH-----HHHHHHHhhCccCeEEEeecCC-----ccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHH
Confidence 1111 1122224456788888885544 1122222222 25678888887432 22110 0022244
Q ss_pred ccccccEEeEeccCC-CC--cCCCC-CCCCccceeeccCCCCceEeCCcccCCchhhhhhhhhhhcccccccCCCCCccc
Q 001993 813 SLAKLRVLTLRFCNE-CE--CLPPL-GKLPCLETLVLEGMSSVKRLGNGFLGIAEDHQARADQAETASSIIRDTAFPRLE 888 (985)
Q Consensus 813 ~l~~L~~L~L~~~~~-~~--~l~~l-~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fp~L~ 888 (985)
.+++|+.|+|++|.. +. .+..+ ..+++|+.|+|++|. +... ++. ....++++|+
T Consensus 434 ~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~--~~~-------------------~~~~~~~~L~ 491 (592)
T 3ogk_B 434 GCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDE--GLM-------------------EFSRGCPNLQ 491 (592)
T ss_dssp HCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHH--HHH-------------------HHHTCCTTCC
T ss_pred hCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHH--HHH-------------------HHHhcCcccC
Confidence 678888888877643 22 12222 247788888888764 2110 000 0014679999
Q ss_pred eeeccccccccccccccccCcccccccccceeecccccCCCCC--CCCCCCCCcCeEEecCc
Q 001993 889 TLEFLDMEKWEEWDDCEIAGGKTIMPRLRHLSICWSPELKALP--DYILGSTSLDKLLIYYS 948 (985)
Q Consensus 889 ~L~l~~~~~L~~~~~~~~~~~~~~lp~L~~L~i~~c~~L~~lp--~~~~~l~~L~~L~i~~c 948 (985)
+|++++|+ ++...... ....+|+|+.|++++|. ++... .....++.|....+...
T Consensus 492 ~L~l~~n~-l~~~~~~~---~~~~l~~L~~L~ls~n~-it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 492 KLEMRGCC-FSERAIAA---AVTKLPSLRYLWVQGYR-ASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp EEEEESCC-CBHHHHHH---HHHHCSSCCEEEEESCB-CCTTCTTGGGGCCTTEEEEEECCC
T ss_pred eeeccCCC-CcHHHHHH---HHHhcCccCeeECcCCc-CCHHHHHHHHHhCCCcEEEEecCc
Confidence 99999987 43321111 22368999999999996 55421 12245677766666554
No 69
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.57 E-value=8.1e-14 Score=154.89 Aligned_cols=295 Identities=12% Similarity=0.091 Sum_probs=177.0
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
.|+||+.++++|.+++.. + +++.|+|++|+|||||++++++. . . .+|+++....
T Consensus 13 ~~~gR~~el~~L~~~l~~-----------------~--~~v~i~G~~G~GKT~Ll~~~~~~--~----~-~~~~~~~~~~ 66 (350)
T 2qen_A 13 DIFDREEESRKLEESLEN-----------------Y--PLTLLLGIRRVGKSSLLRAFLNE--R----P-GILIDCRELY 66 (350)
T ss_dssp GSCSCHHHHHHHHHHHHH-----------------C--SEEEEECCTTSSHHHHHHHHHHH--S----S-EEEEEHHHHH
T ss_pred hcCChHHHHHHHHHHHhc-----------------C--CeEEEECCCcCCHHHHHHHHHHH--c----C-cEEEEeeccc
Confidence 799999999999999862 1 58999999999999999999873 2 2 6788765432
Q ss_pred ------CHHHHHHHHHHHhcC----------------CC--CCCCCHHHHHHHHHHHhcC-ceEEEEecCCCCCCc----
Q 001993 259 ------DDIRIAKAILESLKG----------------SA--TNAVESETVLKQLRESIEG-KKFFLVLDDVWTEEP---- 309 (985)
Q Consensus 259 ------~~~~~~~~i~~~l~~----------------~~--~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~~~~---- 309 (985)
+...++..+...+.. .. ....+..++...+.+.... ++++|||||++..+.
T Consensus 67 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~ 146 (350)
T 2qen_A 67 AERGHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSR 146 (350)
T ss_dssp HTTTCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTT
T ss_pred ccccCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCcc
Confidence 566666666665532 00 0123455666666665543 399999999976321
Q ss_pred ---ccHHHHHhhhcCCCCCcEEEEEcCchhhHHhh----c------CcccccccCCCCChHHHHHHHHHHhcCCCCCccc
Q 001993 310 ---QNWEQLLGCLRCGSKESRILVTTRNEKVAIAI----G------TTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEE 376 (985)
Q Consensus 310 ---~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~----~------~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~ 376 (985)
..+..+...... ..+.++|+|++...+...+ . ......+++.+|+.+|+.+++.......+. ..
T Consensus 147 ~~~~~~~~L~~~~~~-~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~--~~ 223 (350)
T 2qen_A 147 GGKELLALFAYAYDS-LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNL--DV 223 (350)
T ss_dssp TTHHHHHHHHHHHHH-CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTC--CC
T ss_pred chhhHHHHHHHHHHh-cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCC--CC
Confidence 223333333222 2477899998876532211 1 011137899999999999999875432211 11
Q ss_pred chhHHHHHHHHHHhcCCChhHHHHHHhhhhcCCChHHHHHHHHhhhhhhhccccccchhhhcccCCCCcchhHHHhhhcc
Q 001993 377 SENFENIGRQIVSKCKGLPLAVKTLGSLLRFKGKIEEWQRVLENELWELEELDEGLLGPLLLSYLDLPPPLKKCFSYCAI 456 (985)
Q Consensus 377 ~~~~~~~~~~i~~~c~GlPLai~~~~~~L~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl~~a~ 456 (985)
. .+.+..|++.|+|+|+++..++..+....+...+........... ....+. .+.+ + ++..+..+..+|.
T Consensus 224 ~---~~~~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~---~l~~-~-~~~~~~~l~~la~ 293 (350)
T 2qen_A 224 P---ENEIEEAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVAKGL--IMGELE---ELRR-R-SPRYVDILRAIAL 293 (350)
T ss_dssp C---HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--HHHHHH---HHHH-H-CHHHHHHHHHHHT
T ss_pred C---HHHHHHHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHHHHHH--HHHHHH---HHHh-C-ChhHHHHHHHHHh
Confidence 1 245788999999999999999876533223222221111100000 000111 1112 2 6788889988887
Q ss_pred CCCCcccChhHHHHHHhhcCcccccCccchhhHhHHHHHHHhhccccccccCCCCCCeEEEEecchHHHHHHH
Q 001993 457 FPKDSRLEKDKLIRLWMAQDYLKVKGREDMVVGEGYFENLAMRSLFQDFERSEHDGGKIISCQMHDMVHDFSQ 529 (985)
Q Consensus 457 fp~~~~i~~~~Li~~Wiaeg~i~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~~~mHdlv~d~~~ 529 (985)
+ .++...+....-... .+.+......+++.|.+.+++.... +. +...|++++++.+
T Consensus 294 ---g-~~~~~~l~~~~~~~~-----~~~~~~~~~~~l~~L~~~gli~~~~-----~~---y~~~~p~~~~~~~ 349 (350)
T 2qen_A 294 ---G-YNRWSLIRDYLAVKG-----TKIPEPRLYALLENLKKMNWIVEED-----NT---YKIADPVVATVLR 349 (350)
T ss_dssp ---T-CCSHHHHHHHHHHTT-----CCCCHHHHHHHHHHHHHTTSEEEET-----TE---EEESSHHHHHHHT
T ss_pred ---C-CCCHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHhCCCEEecC-----CE---EEEecHHHHHHHc
Confidence 2 234455544332210 0112245678899999999997641 21 1235778877643
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.54 E-value=8.7e-15 Score=169.61 Aligned_cols=128 Identities=15% Similarity=0.079 Sum_probs=84.8
Q ss_pred CCCCCCeEEEeeccCCCCCCCChhhh-ccccccEEeEeccCCCCcCCCCCCCCccceeeccCCCCceEeCCcccCCchhh
Q 001993 787 PPSSLEKLGIYGYAGDTISPTSDWML-SLAKLRVLTLRFCNECECLPPLGKLPCLETLVLEGMSSVKRLGNGFLGIAEDH 865 (985)
Q Consensus 787 ~~~~L~~L~l~~~~~~~~~~~p~~~~-~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~ 865 (985)
.+++|+.|++++|...... |.++. .+++|+.|+|++|. ++.+|....+++|+.|+|++|. +..++..+
T Consensus 142 ~l~~L~~L~Ls~N~l~~~~--~~~l~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~------- 210 (487)
T 3oja_A 142 CRSRVQYLDLKLNEIDTVN--FAELAASSDTLEHLNLQYNF-IYDVKGQVVFAKLKTLDLSSNK-LAFMGPEF------- 210 (487)
T ss_dssp GGSSEEEEECTTSCCCEEE--GGGGGGGTTTCCEEECTTSC-CCEEECCCCCTTCCEEECCSSC-CCEECGGG-------
T ss_pred CCCCCCEEECCCCCCCCcC--hHHHhhhCCcccEEecCCCc-cccccccccCCCCCEEECCCCC-CCCCCHhH-------
Confidence 3467777777777665542 55554 68888888888884 5555666778888888888865 66665432
Q ss_pred hhhhhhhhcccccccCCCCCccceeeccccccccccccccccCcccccccccceeecccccC-CCCCCCCCCCCCcCeEE
Q 001993 866 QARADQAETASSIIRDTAFPRLETLEFLDMEKWEEWDDCEIAGGKTIMPRLRHLSICWSPEL-KALPDYILGSTSLDKLL 944 (985)
Q Consensus 866 ~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~lp~L~~L~i~~c~~L-~~lp~~~~~l~~L~~L~ 944 (985)
..+++|+.|+++++ .+..++. ....+++|+.|++++|+.. ..+|..+..++.|+.+.
T Consensus 211 ----------------~~l~~L~~L~Ls~N-~l~~lp~-----~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~ 268 (487)
T 3oja_A 211 ----------------QSAAGVTWISLRNN-KLVLIEK-----ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA 268 (487)
T ss_dssp ----------------GGGTTCSEEECTTS-CCCEECT-----TCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHH
T ss_pred ----------------cCCCCccEEEecCC-cCcccch-----hhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEe
Confidence 24678888888873 3454443 3456788888888887544 24555555666666666
Q ss_pred ecC
Q 001993 945 IYY 947 (985)
Q Consensus 945 i~~ 947 (985)
+..
T Consensus 269 ~~~ 271 (487)
T 3oja_A 269 KQT 271 (487)
T ss_dssp HHH
T ss_pred ccc
Confidence 543
No 71
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.53 E-value=7.8e-16 Score=168.36 Aligned_cols=261 Identities=15% Similarity=0.069 Sum_probs=140.8
Q ss_pred cceeecCC--CCCCCC-cccccCCCCCeEecCCCCCccccc-hhhcCCCCCcEeeccCcccccccchhhhhccccceeec
Q 001993 605 CLRSIDGL--PVGQIP-KGIKKLIHLRYLALGENPWIKELP-EALCELCNLQTLDVSLCHYLKRLPERIGQLINLRHLMN 680 (985)
Q Consensus 605 ~Lr~L~l~--~~~~lp-~~i~~l~~Lr~L~L~~~~~i~~lP-~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l 680 (985)
.++.++++ .+...+ ..+..+++|++|+|++|. +..++ ..+..+++|++|++++|. +..++. +..+++|++|++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~l~~L~~L~L 87 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNP-LSQISAADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDL 87 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSC-CCCCCHHHHTTCTTCCEEECTTSC-CEEEEE-ETTCTTCCEEEC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCc-cCcCCHHHhhCCCcCCEEECCCCc-CCcchh-hhhcCCCCEEEC
Confidence 34555555 222222 234556789999999998 77665 578999999999999998 665654 889999999999
Q ss_pred ccccccccccCCCcCCCCCCCCccCceEecCCCcccccCCchhhhccccCcceeeecccccccCCCCcchhhhccccccc
Q 001993 681 SKEEWSRLSYMPRGMERLTGLRTLGAFVASGGKSSKACSSLKSLNKLKHLEGSLTLRGLGNERDLGDDNDDEKVDLKSKM 760 (985)
Q Consensus 681 ~~n~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~~~~l~~~~ 760 (985)
++|.. ..+| ..++|++|++..+...... ...++
T Consensus 88 s~n~l---~~l~----~~~~L~~L~l~~n~l~~~~-----~~~~~----------------------------------- 120 (317)
T 3o53_A 88 NNNYV---QELL----VGPSIETLHAANNNISRVS-----CSRGQ----------------------------------- 120 (317)
T ss_dssp CSSEE---EEEE----ECTTCCEEECCSSCCSEEE-----ECCCS-----------------------------------
T ss_pred cCCcc---cccc----CCCCcCEEECCCCccCCcC-----ccccC-----------------------------------
Confidence 96544 3333 2367777776543322210 01122
Q ss_pred ccccEEEEEcCCCCcchhHhhhcCCCCCCCCCeEEEeeccCCCCCCCChhh-hccccccEEeEeccCCCCcCCCCCCCCc
Q 001993 761 KLVDLHLRFDSTTKTKDHRVVLECLQPPSSLEKLGIYGYAGDTISPTSDWM-LSLAKLRVLTLRFCNECECLPPLGKLPC 839 (985)
Q Consensus 761 ~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~-~~l~~L~~L~L~~~~~~~~l~~l~~l~~ 839 (985)
+|+.|+++.+.. .......+..+++|+.|++++|...... |..+ ..+++|+.|+|++|. ++.++....+++
T Consensus 121 ~L~~L~l~~N~l-----~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~l~~ 192 (317)
T 3o53_A 121 GKKNIYLANNKI-----TMLRDLDEGCRSRVQYLDLKLNEIDTVN--FAELAASSDTLEHLNLQYNF-IYDVKGQVVFAK 192 (317)
T ss_dssp SCEEEECCSSCC-----CSGGGBCTGGGSSEEEEECTTSCCCEEE--GGGGGGGTTTCCEEECTTSC-CCEEECCCCCTT
T ss_pred CCCEEECCCCCC-----CCccchhhhccCCCCEEECCCCCCCccc--HHHHhhccCcCCEEECCCCc-Cccccccccccc
Confidence 233333333220 0011112333455666666655544431 2333 245666666666663 344444445666
Q ss_pred cceeeccCCCCceEeCCcccCCchhhhhhhhhhhcccccccCCCCCccceeeccccccccccccccccCcccccccccce
Q 001993 840 LETLVLEGMSSVKRLGNGFLGIAEDHQARADQAETASSIIRDTAFPRLETLEFLDMEKWEEWDDCEIAGGKTIMPRLRHL 919 (985)
Q Consensus 840 L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~lp~L~~L 919 (985)
|+.|+|++|. +..++..+ ..+++|++|+++++ .++.++. ....+++|+.|
T Consensus 193 L~~L~Ls~N~-l~~l~~~~-----------------------~~l~~L~~L~L~~N-~l~~l~~-----~~~~l~~L~~L 242 (317)
T 3o53_A 193 LKTLDLSSNK-LAFMGPEF-----------------------QSAAGVTWISLRNN-KLVLIEK-----ALRFSQNLEHF 242 (317)
T ss_dssp CCEEECCSSC-CCEECGGG-----------------------GGGTTCSEEECTTS-CCCEECT-----TCCCCTTCCEE
T ss_pred CCEEECCCCc-CCcchhhh-----------------------cccCcccEEECcCC-cccchhh-----HhhcCCCCCEE
Confidence 6666666543 44444331 13455666666553 3333322 23345666666
Q ss_pred eecccccC-CCCCCCCCCCCCcCeEEecCchhhhh
Q 001993 920 SICWSPEL-KALPDYILGSTSLDKLLIYYSRHLNN 953 (985)
Q Consensus 920 ~i~~c~~L-~~lp~~~~~l~~L~~L~i~~c~~l~~ 953 (985)
++++|+.. ..+|..+..+++|+.|++.+|+.++.
T Consensus 243 ~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 243 DLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp ECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred EccCCCccCcCHHHHHhccccceEEECCCchhccC
Confidence 66655433 23444444555555555555554443
No 72
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.52 E-value=1.2e-14 Score=156.36 Aligned_cols=102 Identities=21% Similarity=0.250 Sum_probs=50.5
Q ss_pred CCceEEEccCcCCcchhhhHHHhhccCCcceeecCC--CCCCC-CcccccCCCCCeEecCCCCCcccc-chhhcCCCCCc
Q 001993 577 TKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL--PVGQI-PKGIKKLIHLRYLALGENPWIKEL-PEALCELCNLQ 652 (985)
Q Consensus 577 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~--~~~~l-p~~i~~l~~Lr~L~L~~~~~i~~l-P~~i~~L~~L~ 652 (985)
++|+.|.++++.. ....+..|.++++|++|+++ .+..+ |..+..+++|++|++++|..+..+ |..+..+++|+
T Consensus 32 ~~l~~L~l~~n~i---~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~ 108 (285)
T 1ozn_A 32 AASQRIFLHGNRI---SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLH 108 (285)
T ss_dssp TTCSEEECTTSCC---CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCC
T ss_pred CCceEEEeeCCcC---CccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCC
Confidence 4666666666543 22222334555555555555 23333 344555555555555555334444 34455555555
Q ss_pred EeeccCccccccc-chhhhhccccceeeccc
Q 001993 653 TLDVSLCHYLKRL-PERIGQLINLRHLMNSK 682 (985)
Q Consensus 653 ~L~l~~~~~l~~l-P~~i~~L~~L~~L~l~~ 682 (985)
+|++++|. +..+ |..+..+++|++|++++
T Consensus 109 ~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~ 138 (285)
T 1ozn_A 109 TLHLDRCG-LQELGPGLFRGLAALQYLYLQD 138 (285)
T ss_dssp EEECTTSC-CCCCCTTTTTTCTTCCEEECCS
T ss_pred EEECCCCc-CCEECHhHhhCCcCCCEEECCC
Confidence 55555555 3333 33445555555555553
No 73
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.51 E-value=1.5e-13 Score=143.50 Aligned_cols=64 Identities=23% Similarity=0.345 Sum_probs=43.9
Q ss_pred CCCCCcccccCCCCCeEecCCCCCccccch-hhcCCCCCcEeeccCcccccccch-hhhhccccceeecc
Q 001993 614 VGQIPKGIKKLIHLRYLALGENPWIKELPE-ALCELCNLQTLDVSLCHYLKRLPE-RIGQLINLRHLMNS 681 (985)
Q Consensus 614 ~~~lp~~i~~l~~Lr~L~L~~~~~i~~lP~-~i~~L~~L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~ 681 (985)
+..+|. +. .+|++|++++|. +..+|. .+..+++|++|++++|..+..+|. .+..+++|++|+++
T Consensus 23 l~~ip~-~~--~~l~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~ 88 (239)
T 2xwt_C 23 IQRIPS-LP--PSTQTLKLIETH-LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIR 88 (239)
T ss_dssp CSSCCC-CC--TTCCEEEEESCC-CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEE
T ss_pred ccccCC-CC--CcccEEEEeCCc-ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECC
Confidence 555665 33 367788888777 777765 577777888888877754666654 45677777777776
No 74
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.51 E-value=4.4e-14 Score=151.98 Aligned_cols=197 Identities=20% Similarity=0.177 Sum_probs=125.4
Q ss_pred CcceeecCC--CCCCCC-cccccCCCCCeEecCCCCCcccc-chhhcCCCCCcEeeccCccccccc-chhhhhcccccee
Q 001993 604 TCLRSIDGL--PVGQIP-KGIKKLIHLRYLALGENPWIKEL-PEALCELCNLQTLDVSLCHYLKRL-PERIGQLINLRHL 678 (985)
Q Consensus 604 ~~Lr~L~l~--~~~~lp-~~i~~l~~Lr~L~L~~~~~i~~l-P~~i~~L~~L~~L~l~~~~~l~~l-P~~i~~L~~L~~L 678 (985)
+.|+.|+++ .+..+| ..+..+++|++|++++|. +..+ |..+..+++|++|++++|..+..+ |..+..+++|++|
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCc-cceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 466777776 455554 346777777777777776 5555 556777777777777777545555 4566677777777
Q ss_pred ecccccccccccC-CCcCCCCCCCCccCceEecCCCcccccCCchhhhccccCcceeeecccccccCCCCcchhhhcccc
Q 001993 679 MNSKEEWSRLSYM-PRGMERLTGLRTLGAFVASGGKSSKACSSLKSLNKLKHLEGSLTLRGLGNERDLGDDNDDEKVDLK 757 (985)
Q Consensus 679 ~l~~n~~~~l~~~-p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~~~~l~ 757 (985)
++++|.. ..+ |..++++++|++|++..+...... ...+.
T Consensus 111 ~l~~n~l---~~~~~~~~~~l~~L~~L~l~~n~l~~~~-------------------------------------~~~~~ 150 (285)
T 1ozn_A 111 HLDRCGL---QELGPGLFRGLAALQYLYLQDNALQALP-------------------------------------DDTFR 150 (285)
T ss_dssp ECTTSCC---CCCCTTTTTTCTTCCEEECCSSCCCCCC-------------------------------------TTTTT
T ss_pred ECCCCcC---CEECHhHhhCCcCCCEEECCCCcccccC-------------------------------------HhHhc
Confidence 7774433 233 344666666666665433222100 01133
Q ss_pred cccccccEEEEEcCCCCcchhHhhhcCCCCCCCCCeEEEeeccCCCCCCCChhhhccccccEEeEeccCCCCcCCC--CC
Q 001993 758 SKMKLVDLHLRFDSTTKTKDHRVVLECLQPPSSLEKLGIYGYAGDTISPTSDWMLSLAKLRVLTLRFCNECECLPP--LG 835 (985)
Q Consensus 758 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~--l~ 835 (985)
.+++|+.|+++.+.. .......+..+++|+.|++++|...... |.++..+++|+.|+|++|. ++.+++ +.
T Consensus 151 ~l~~L~~L~l~~n~l-----~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~ 222 (285)
T 1ozn_A 151 DLGNLTHLFLHGNRI-----SSVPERAFRGLHSLDRLLLHQNRVAHVH--PHAFRDLGRLMTLYLFANN-LSALPTEALA 222 (285)
T ss_dssp TCTTCCEEECCSSCC-----CEECTTTTTTCTTCCEEECCSSCCCEEC--TTTTTTCTTCCEEECCSSC-CSCCCHHHHT
T ss_pred cCCCccEEECCCCcc-----cccCHHHhcCccccCEEECCCCcccccC--HhHccCcccccEeeCCCCc-CCcCCHHHcc
Confidence 345555666554431 0111123566788999999998876654 7788889999999999994 445553 78
Q ss_pred CCCccceeeccCCC
Q 001993 836 KLPCLETLVLEGMS 849 (985)
Q Consensus 836 ~l~~L~~L~L~~~~ 849 (985)
.+++|+.|+|++++
T Consensus 223 ~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 223 PLRALQYLRLNDNP 236 (285)
T ss_dssp TCTTCCEEECCSSC
T ss_pred cCcccCEEeccCCC
Confidence 89999999999876
No 75
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.50 E-value=1.9e-15 Score=164.85 Aligned_cols=245 Identities=19% Similarity=0.180 Sum_probs=152.2
Q ss_pred CCCCceEEEccCcCCcchhhhHHHhhccCCcceeecCC--CC--CCCCcccc-------cCCCCCeEecCCCCCcc-ccc
Q 001993 575 DETKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL--PV--GQIPKGIK-------KLIHLRYLALGENPWIK-ELP 642 (985)
Q Consensus 575 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~--~~--~~lp~~i~-------~l~~Lr~L~L~~~~~i~-~lP 642 (985)
..++|+.|.+.++.. . .|..+... |+.|+++ .+ ..+|..+. .+.+|++|+|++|. +. .+|
T Consensus 41 ~~~~L~~l~l~~n~l-~----~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~ 112 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE-A----DLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLE-VTGTAP 112 (312)
T ss_dssp EEEECTTHHHHCCTT-C----CCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEB-CBSCCC
T ss_pred cCCCceeEeeccccc-c----cHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCc-ccchhH
Confidence 344566666666553 1 12212221 6667766 22 23555554 67888888888887 54 677
Q ss_pred hhh--cCCCCCcEeeccCcccccccchhhhhc-----cccceeecccccccccccCC-CcCCCCCCCCccCceEecCCCc
Q 001993 643 EAL--CELCNLQTLDVSLCHYLKRLPERIGQL-----INLRHLMNSKEEWSRLSYMP-RGMERLTGLRTLGAFVASGGKS 714 (985)
Q Consensus 643 ~~i--~~L~~L~~L~l~~~~~l~~lP~~i~~L-----~~L~~L~l~~n~~~~l~~~p-~~i~~L~~L~~L~~~~~~~~~~ 714 (985)
..+ +.+++|++|++++|. +..+|..+..+ ++|++|++++|.. ..+| ..++++++|++|++..+.....
T Consensus 113 ~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~l---~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 188 (312)
T 1wwl_A 113 PPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAHS---LNFSCEQVRVFPALSTLDLSDNPELGE 188 (312)
T ss_dssp CCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCSC---CCCCTTTCCCCSSCCEEECCSCTTCHH
T ss_pred HHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCCC---ccchHHHhccCCCCCEEECCCCCcCcc
Confidence 765 778888888888887 66667777777 7888888885543 4444 5678888888887765543210
Q ss_pred ccccC--CchhhhccccCcceeeecccccccCCCCcchhhhcccccccccccEEEEEcCCCCcchhHhhhcCCCCCCCCC
Q 001993 715 SKACS--SLKSLNKLKHLEGSLTLRGLGNERDLGDDNDDEKVDLKSKMKLVDLHLRFDSTTKTKDHRVVLECLQPPSSLE 792 (985)
Q Consensus 715 ~~~~~--~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~ 792 (985)
..... .+..+++|+ .|.+.+.. +.. ........+..+++|+.|+++++.-... .....+..+++|+
T Consensus 189 ~~~~~~~~~~~l~~L~----~L~L~~N~-l~~---~~~~~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~~l~~L~ 256 (312)
T 1wwl_A 189 RGLISALCPLKFPTLQ----VLALRNAG-MET---PSGVCSALAAARVQLQGLDLSHNSLRDA----AGAPSCDWPSQLN 256 (312)
T ss_dssp HHHHHHSCTTSCTTCC----EEECTTSC-CCC---HHHHHHHHHHTTCCCSEEECTTSCCCSS----CCCSCCCCCTTCC
T ss_pred hHHHHHHHhccCCCCC----EEECCCCc-Ccc---hHHHHHHHHhcCCCCCEEECCCCcCCcc----cchhhhhhcCCCC
Confidence 00000 113333333 34433221 110 1111222344567899999887651110 0012344568999
Q ss_pred eEEEeeccCCCCCCCChhhhccccccEEeEeccCCCCcCCCCCCCCccceeeccCCC
Q 001993 793 KLGIYGYAGDTISPTSDWMLSLAKLRVLTLRFCNECECLPPLGKLPCLETLVLEGMS 849 (985)
Q Consensus 793 ~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~ 849 (985)
.|++++|....+ |.++. ++|+.|+|++| .++.+|.+..+++|+.|+|++++
T Consensus 257 ~L~Ls~N~l~~i---p~~~~--~~L~~L~Ls~N-~l~~~p~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 257 SLNLSFTGLKQV---PKGLP--AKLSVLDLSYN-RLDRNPSPDELPQVGNLSLKGNP 307 (312)
T ss_dssp EEECTTSCCSSC---CSSCC--SEEEEEECCSS-CCCSCCCTTTSCEEEEEECTTCT
T ss_pred EEECCCCccChh---hhhcc--CCceEEECCCC-CCCCChhHhhCCCCCEEeccCCC
Confidence 999999988776 87766 89999999999 45666889999999999999865
No 76
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.50 E-value=1e-14 Score=158.97 Aligned_cols=34 Identities=15% Similarity=0.185 Sum_probs=21.4
Q ss_pred ccccceeecccccCCCCCCCCCCCCCcCeEEecCch
Q 001993 914 PRLRHLSICWSPELKALPDYILGSTSLDKLLIYYSR 949 (985)
Q Consensus 914 p~L~~L~i~~c~~L~~lp~~~~~l~~L~~L~i~~c~ 949 (985)
++|+.|++++| .++.+|. +..+++|+.|++++++
T Consensus 274 ~~L~~L~Ls~N-~l~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 274 AKLSVLDLSYN-RLDRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp SEEEEEECCSS-CCCSCCC-TTTSCEEEEEECTTCT
T ss_pred CCceEEECCCC-CCCCChh-HhhCCCCCEEeccCCC
Confidence 56666666665 4555554 5566667777766664
No 77
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.50 E-value=6.7e-13 Score=147.84 Aligned_cols=290 Identities=10% Similarity=0.062 Sum_probs=170.9
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCC-
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEP- 257 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~- 257 (985)
.|+||++++++|.+ +. . +++.|+|++|+|||||++++++. ... ..+|+++...
T Consensus 14 ~~~gR~~el~~L~~-l~-----------------~---~~v~i~G~~G~GKT~L~~~~~~~--~~~---~~~~~~~~~~~ 67 (357)
T 2fna_A 14 DFFDREKEIEKLKG-LR-----------------A---PITLVLGLRRTGKSSIIKIGINE--LNL---PYIYLDLRKFE 67 (357)
T ss_dssp GSCCCHHHHHHHHH-TC-----------------S---SEEEEEESTTSSHHHHHHHHHHH--HTC---CEEEEEGGGGT
T ss_pred HhcChHHHHHHHHH-hc-----------------C---CcEEEECCCCCCHHHHHHHHHHh--cCC---CEEEEEchhhc
Confidence 79999999999998 64 2 59999999999999999999973 322 2578887642
Q ss_pred ----CCHHHHHHHHHHHhcC-------------C-------CC---------CCCCHHHHHHHHHHHhcCceEEEEecCC
Q 001993 258 ----FDDIRIAKAILESLKG-------------S-------AT---------NAVESETVLKQLRESIEGKKFFLVLDDV 304 (985)
Q Consensus 258 ----~~~~~~~~~i~~~l~~-------------~-------~~---------~~~~~~~~~~~l~~~l~~k~~LlVlDdv 304 (985)
.+....+..+.+.+.. . .. .......+...+.+.-. ++++|||||+
T Consensus 68 ~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~ 146 (357)
T 2fna_A 68 ERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEA 146 (357)
T ss_dssp TCSCCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETG
T ss_pred cccCCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECH
Confidence 3445555554443310 0 00 11234445544444322 4999999999
Q ss_pred CCCC----cccHHHHHhhhcCCCCCcEEEEEcCchhhHHhh----c------CcccccccCCCCChHHHHHHHHHHhcCC
Q 001993 305 WTEE----PQNWEQLLGCLRCGSKESRILVTTRNEKVAIAI----G------TTKFNIIPIELLSDEDCWSIFSQLALSR 370 (985)
Q Consensus 305 ~~~~----~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~----~------~~~~~~~~l~~L~~~e~~~Lf~~~~~~~ 370 (985)
+..+ ...+..+..... ...+.++|+|++.......+ . ......+++.+|+.+|+.+++.......
T Consensus 147 ~~~~~~~~~~~~~~l~~~~~-~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~ 225 (357)
T 2fna_A 147 QELVKLRGVNLLPALAYAYD-NLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEA 225 (357)
T ss_dssp GGGGGCTTCCCHHHHHHHHH-HCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHH
T ss_pred HHhhccCchhHHHHHHHHHH-cCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHc
Confidence 6532 122333333222 22467899999976532211 0 0111478899999999999998754211
Q ss_pred CCCcccchhHHHHHHHHHHhcCCChhHHHHHHhhhhcCCChHHHHHHHHhhhhhhhccccccchhhh-ccc--CCCCcch
Q 001993 371 RLDIEESENFENIGRQIVSKCKGLPLAVKTLGSLLRFKGKIEEWQRVLENELWELEELDEGLLGPLL-LSY--LDLPPPL 447 (985)
Q Consensus 371 ~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~L~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~-~sy--~~L~~~~ 447 (985)
+. .... ...|++.|+|+|+++..++..+....+...|....-..... .+...+. +.+ ..|++..
T Consensus 226 ~~--~~~~-----~~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~l~~~~ 292 (357)
T 2fna_A 226 DI--DFKD-----YEVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKK------LILKEFENFLHGREIARKRY 292 (357)
T ss_dssp TC--CCCC-----HHHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH------HHHHHHHHHHTTCGGGHHHH
T ss_pred CC--CCCc-----HHHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHHH------HHHHHHHHHhhccccccHHH
Confidence 11 1111 27899999999999999988765433443443211110000 0111111 111 1578889
Q ss_pred hHHHhhhccCCCCcccChhHHHHHHh-hcCcccccCccchhhHhHHHHHHHhhccccccccCCCCCCeEEEEe-cchHHH
Q 001993 448 KKCFSYCAIFPKDSRLEKDKLIRLWM-AQDYLKVKGREDMVVGEGYFENLAMRSLFQDFERSEHDGGKIISCQ-MHDMVH 525 (985)
Q Consensus 448 k~cfl~~a~fp~~~~i~~~~Li~~Wi-aeg~i~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~~~-mHdlv~ 525 (985)
+..+..+|+ +. +...+....- ..|. ..+......+++.|++.+++.... +. |+ .|++++
T Consensus 293 ~~~l~~la~---g~--~~~~l~~~~~~~~g~-----~~~~~~~~~~L~~L~~~gli~~~~-----~~----y~f~~~~~~ 353 (357)
T 2fna_A 293 LNIMRTLSK---CG--KWSDVKRALELEEGI-----EISDSEIYNYLTQLTKHSWIIKEG-----EK----YCPSEPLIS 353 (357)
T ss_dssp HHHHHHHTT---CB--CHHHHHHHHHHHHCS-----CCCHHHHHHHHHHHHHTTSEEESS-----SC----EEESSHHHH
T ss_pred HHHHHHHHc---CC--CHHHHHHHHHHhcCC-----CCCHHHHHHHHHHHHhCCCEEecC-----CE----EEecCHHHH
Confidence 999999998 21 4444432210 1120 012245668899999999987542 22 34 578887
Q ss_pred HHH
Q 001993 526 DFS 528 (985)
Q Consensus 526 d~~ 528 (985)
+..
T Consensus 354 ~~l 356 (357)
T 2fna_A 354 LAF 356 (357)
T ss_dssp HHT
T ss_pred Hhh
Confidence 653
No 78
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.50 E-value=5.2e-14 Score=152.92 Aligned_cols=193 Identities=21% Similarity=0.215 Sum_probs=112.8
Q ss_pred CCcceeecCC--CCCCCCcccccCCCCCeEecCCCCCccccchhhcCCCCCcEeeccCcccccccchhhhhccccceeec
Q 001993 603 LTCLRSIDGL--PVGQIPKGIKKLIHLRYLALGENPWIKELPEALCELCNLQTLDVSLCHYLKRLPERIGQLINLRHLMN 680 (985)
Q Consensus 603 l~~Lr~L~l~--~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l 680 (985)
++.|+.|+++ .+..+| .+..+++|++|++++|. +..+|. +..+++|++|++++|. +..+| .+..+++|++|++
T Consensus 40 l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~-i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQ-ITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEEEC
T ss_pred cCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCc-CCCChh-HccCCCCCEEEccCCc-CCCch-hhcCCCCCCEEEC
Confidence 4445555555 344444 45666666666666665 666665 6666666666666665 55554 4666666666666
Q ss_pred ccccccccccCCCcCCCCCCCCccCceEecCCCcccccCCchhhhccccCcceeeecccccccCCCCcchhhhccccccc
Q 001993 681 SKEEWSRLSYMPRGMERLTGLRTLGAFVASGGKSSKACSSLKSLNKLKHLEGSLTLRGLGNERDLGDDNDDEKVDLKSKM 760 (985)
Q Consensus 681 ~~n~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~~~~l~~~~ 760 (985)
++|.. ..+|. ++.+++|+.|++..+.... +..+ ..++
T Consensus 115 ~~n~l---~~~~~-l~~l~~L~~L~l~~n~l~~-------~~~l--------------------------------~~l~ 151 (308)
T 1h6u_A 115 TSTQI---TDVTP-LAGLSNLQVLYLDLNQITN-------ISPL--------------------------------AGLT 151 (308)
T ss_dssp TTSCC---CCCGG-GTTCTTCCEEECCSSCCCC-------CGGG--------------------------------GGCT
T ss_pred CCCCC---CCchh-hcCCCCCCEEECCCCccCc-------Cccc--------------------------------cCCC
Confidence 64433 33332 5555666665554322211 1111 1223
Q ss_pred ccccEEEEEcCCCCcchhHhhhcCCCCCCCCCeEEEeeccCCCCCCCChhhhccccccEEeEeccCCCCcCCCCCCCCcc
Q 001993 761 KLVDLHLRFDSTTKTKDHRVVLECLQPPSSLEKLGIYGYAGDTISPTSDWMLSLAKLRVLTLRFCNECECLPPLGKLPCL 840 (985)
Q Consensus 761 ~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L 840 (985)
+|+.|+++.+... . ...+..+++|+.|++++|....+ +. +..+++|+.|+|++|. +..++++..+++|
T Consensus 152 ~L~~L~l~~n~l~------~-~~~l~~l~~L~~L~l~~n~l~~~---~~-l~~l~~L~~L~L~~N~-l~~~~~l~~l~~L 219 (308)
T 1h6u_A 152 NLQYLSIGNAQVS------D-LTPLANLSKLTTLKADDNKISDI---SP-LASLPNLIEVHLKNNQ-ISDVSPLANTSNL 219 (308)
T ss_dssp TCCEEECCSSCCC------C-CGGGTTCTTCCEEECCSSCCCCC---GG-GGGCTTCCEEECTTSC-CCBCGGGTTCTTC
T ss_pred CccEEEccCCcCC------C-ChhhcCCCCCCEEECCCCccCcC---hh-hcCCCCCCEEEccCCc-cCccccccCCCCC
Confidence 3344444333200 0 01145567888888888877666 43 6788899999999984 5566678889999
Q ss_pred ceeeccCCCCceEeCC
Q 001993 841 ETLVLEGMSSVKRLGN 856 (985)
Q Consensus 841 ~~L~L~~~~~l~~l~~ 856 (985)
+.|+|++++ +...+.
T Consensus 220 ~~L~l~~N~-i~~~~~ 234 (308)
T 1h6u_A 220 FIVTLTNQT-ITNQPV 234 (308)
T ss_dssp CEEEEEEEE-EECCCE
T ss_pred CEEEccCCe-eecCCe
Confidence 999998865 444443
No 79
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.48 E-value=6.6e-14 Score=162.23 Aligned_cols=212 Identities=18% Similarity=0.138 Sum_probs=129.2
Q ss_pred cCCcceeecCC--CCCCC-CcccccCCCCCeEecCCCCCccccchhhcCCCCCcEeeccCcccccccchhhhhcccccee
Q 001993 602 RLTCLRSIDGL--PVGQI-PKGIKKLIHLRYLALGENPWIKELPEALCELCNLQTLDVSLCHYLKRLPERIGQLINLRHL 678 (985)
Q Consensus 602 ~l~~Lr~L~l~--~~~~l-p~~i~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L 678 (985)
.+++|+.|+++ .+..+ |..++.+++|++|+|++|. +..+++ ++.+++|++|+|++|. +..+|. .++|++|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~----~~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNNY-VQELLV----GPSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC-CEEEEE-CTTCTTCCEEECCSSE-EEEEEE----CTTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC-CCCCcc-cccCCCCCEEEecCCc-CCCCCC----CCCcCEE
Confidence 33466666666 34444 3456677777777777776 555444 6677777777777765 555543 2667777
Q ss_pred ecccccccccccCCCcCCCCCCCCccCceEecCCCcccccCCchhhhccccCcceeeecccccccCCCCcchhhhccc-c
Q 001993 679 MNSKEEWSRLSYMPRGMERLTGLRTLGAFVASGGKSSKACSSLKSLNKLKHLEGSLTLRGLGNERDLGDDNDDEKVDL-K 757 (985)
Q Consensus 679 ~l~~n~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~~~~l-~ 757 (985)
++++|.. ..+|. ..+++|+.|++..+...... ...+..+++|+.| .++-+.+... ....+ .
T Consensus 105 ~L~~N~l---~~~~~--~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L--~Ls~N~l~~~---------~~~~l~~ 166 (487)
T 3oja_A 105 HAANNNI---SRVSC--SRGQGKKNIYLANNKITMLR--DLDEGCRSRVQYL--DLKLNEIDTV---------NFAELAA 166 (487)
T ss_dssp ECCSSCC---CCEEE--CCCSSCEEEECCSSCCCSGG--GBCGGGGSSEEEE--ECTTSCCCEE---------EGGGGGG
T ss_pred ECcCCcC---CCCCc--cccCCCCEEECCCCCCCCCC--chhhcCCCCCCEE--ECCCCCCCCc---------ChHHHhh
Confidence 7765433 22332 23456666666554433311 1133444444433 2222222111 11122 2
Q ss_pred cccccccEEEEEcCCCCcchhHhhhcCCCCCCCCCeEEEeeccCCCCCCCChhhhccccccEEeEeccCCCCcCC-CCCC
Q 001993 758 SKMKLVDLHLRFDSTTKTKDHRVVLECLQPPSSLEKLGIYGYAGDTISPTSDWMLSLAKLRVLTLRFCNECECLP-PLGK 836 (985)
Q Consensus 758 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~-~l~~ 836 (985)
.+++|+.|+|++|... .......+++|+.|++++|....+ |..+..+++|+.|+|++|.. ..+| .++.
T Consensus 167 ~l~~L~~L~Ls~N~l~-------~~~~~~~l~~L~~L~Ls~N~l~~~---~~~~~~l~~L~~L~Ls~N~l-~~lp~~l~~ 235 (487)
T 3oja_A 167 SSDTLEHLNLQYNFIY-------DVKGQVVFAKLKTLDLSSNKLAFM---GPEFQSAAGVTWISLRNNKL-VLIEKALRF 235 (487)
T ss_dssp GTTTCCEEECTTSCCC-------EEECCCCCTTCCEEECCSSCCCEE---CGGGGGGTTCSEEECTTSCC-CEECTTCCC
T ss_pred hCCcccEEecCCCccc-------cccccccCCCCCEEECCCCCCCCC---CHhHcCCCCccEEEecCCcC-cccchhhcc
Confidence 5677888888766511 112334578999999999988877 77788999999999999954 4555 5888
Q ss_pred CCccceeeccCCC
Q 001993 837 LPCLETLVLEGMS 849 (985)
Q Consensus 837 l~~L~~L~L~~~~ 849 (985)
+++|+.|++++|+
T Consensus 236 l~~L~~L~l~~N~ 248 (487)
T 3oja_A 236 SQNLEHFDLRGNG 248 (487)
T ss_dssp CTTCCEEECTTCC
T ss_pred CCCCCEEEcCCCC
Confidence 9999999999876
No 80
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.47 E-value=2.9e-16 Score=181.92 Aligned_cols=341 Identities=17% Similarity=0.113 Sum_probs=199.8
Q ss_pred CCceEEEccCcCCcchhhhHHHhhccCCcceeecCC--CCC-----CCCcccccCCCCCeEecCCCCCccc-cchhhc-C
Q 001993 577 TKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL--PVG-----QIPKGIKKLIHLRYLALGENPWIKE-LPEALC-E 647 (985)
Q Consensus 577 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~--~~~-----~lp~~i~~l~~Lr~L~L~~~~~i~~-lP~~i~-~ 647 (985)
++|+.|+++++... .......+..+++|++|+++ .+. .+|..+..+++|++|+|++|. +.. .+..+. .
T Consensus 3 ~~l~~L~Ls~~~l~--~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~ 79 (461)
T 1z7x_W 3 LDIQSLDIQCEELS--DARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQG 79 (461)
T ss_dssp EEEEEEEEESCCCC--HHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHT
T ss_pred ccceehhhhhcccC--chhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCc-CChHHHHHHHHH
Confidence 57899999888642 23345668889999999998 333 456778888999999999998 654 233333 4
Q ss_pred CC----CCcEeeccCccccc-----ccchhhhhccccceeecccccccc--cccCCCc-CCCCCCCCccCceEecCCCcc
Q 001993 648 LC----NLQTLDVSLCHYLK-----RLPERIGQLINLRHLMNSKEEWSR--LSYMPRG-MERLTGLRTLGAFVASGGKSS 715 (985)
Q Consensus 648 L~----~L~~L~l~~~~~l~-----~lP~~i~~L~~L~~L~l~~n~~~~--l~~~p~~-i~~L~~L~~L~~~~~~~~~~~ 715 (985)
+. +|++|++++|. +. .+|..+..+++|++|++++|.... ...+... ....++|++|++..+......
T Consensus 80 l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 158 (461)
T 1z7x_W 80 LQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS 158 (461)
T ss_dssp TCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG
T ss_pred HhhCCCceeEEEccCCC-CCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHH
Confidence 55 79999999998 54 568888999999999999665421 1111122 234567888888655433211
Q ss_pred cccCCchhhhccccCcceeeecccccccCCCCcc-hhhhccc-ccccccccEEEEEcCCCCcchhHhhhcCCCCCCCCCe
Q 001993 716 KACSSLKSLNKLKHLEGSLTLRGLGNERDLGDDN-DDEKVDL-KSKMKLVDLHLRFDSTTKTKDHRVVLECLQPPSSLEK 793 (985)
Q Consensus 716 ~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~-~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~ 793 (985)
... ....+..+++|+ .|.+.+.. +.+ .. ......+ ...++|+.|+++++... ......+...+..+++|+.
T Consensus 159 ~~~-l~~~l~~~~~L~-~L~L~~n~-i~~---~~~~~l~~~l~~~~~~L~~L~L~~n~l~-~~~~~~l~~~l~~~~~L~~ 231 (461)
T 1z7x_W 159 CEP-LASVLRAKPDFK-ELTVSNND-INE---AGVRVLCQGLKDSPCQLEALKLESCGVT-SDNCRDLCGIVASKASLRE 231 (461)
T ss_dssp HHH-HHHHHHHCTTCC-EEECCSSB-CHH---HHHHHHHHHHHHSCCCCCEEECTTSCCB-TTHHHHHHHHHHHCTTCCE
T ss_pred HHH-HHHHHhhCCCCC-EEECcCCC-cch---HHHHHHHHHHhcCCCCceEEEccCCCCc-HHHHHHHHHHHHhCCCccE
Confidence 000 012223334444 45544321 110 00 0010111 12458888888776511 1111234444556788999
Q ss_pred EEEeeccCCCCC--CC-ChhhhccccccEEeEeccCCCCc-----CC-CCCCCCccceeeccCCCCceEeCCcccCCchh
Q 001993 794 LGIYGYAGDTIS--PT-SDWMLSLAKLRVLTLRFCNECEC-----LP-PLGKLPCLETLVLEGMSSVKRLGNGFLGIAED 864 (985)
Q Consensus 794 L~l~~~~~~~~~--~~-p~~~~~l~~L~~L~L~~~~~~~~-----l~-~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~ 864 (985)
|++++|...... .+ +.....+++|+.|+|++|. ++. ++ .+..+++|++|+|++|. +...+...+..
T Consensus 232 L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~--- 306 (461)
T 1z7x_W 232 LALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG-ITAKGCGDLCRVLRAKESLKELSLAGNE-LGDEGARLLCE--- 306 (461)
T ss_dssp EECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCTTCCEEECTTCC-CHHHHHHHHHH---
T ss_pred EeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCC-CCHHHHHHHHHHHhhCCCcceEECCCCC-CchHHHHHHHH---
Confidence 999887643210 00 1112247889999999884 333 33 35568889999998864 32211100000
Q ss_pred hhhhhhhhhcccccccCCCCCccceeeccccccccccccccccCcccccccccceeecccccCCCC-C----CCCC-CCC
Q 001993 865 HQARADQAETASSIIRDTAFPRLETLEFLDMEKWEEWDDCEIAGGKTIMPRLRHLSICWSPELKAL-P----DYIL-GST 938 (985)
Q Consensus 865 ~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~lp~L~~L~i~~c~~L~~l-p----~~~~-~l~ 938 (985)
.. ....++|++|++++|. +..............+++|++|++++| .++.. + ..+. ..+
T Consensus 307 ------------~l--~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~ 370 (461)
T 1z7x_W 307 ------------TL--LEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGS 370 (461)
T ss_dssp ------------HH--TSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTC
T ss_pred ------------Hh--ccCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCC
Confidence 00 1234699999999875 332211000112335799999999998 45432 1 1222 267
Q ss_pred CcCeEEecCch
Q 001993 939 SLDKLLIYYSR 949 (985)
Q Consensus 939 ~L~~L~i~~c~ 949 (985)
+|+.|++++|.
T Consensus 371 ~L~~L~L~~n~ 381 (461)
T 1z7x_W 371 VLRVLWLADCD 381 (461)
T ss_dssp CCCEEECTTSC
T ss_pred ceEEEECCCCC
Confidence 99999999995
No 81
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.46 E-value=9.1e-16 Score=184.00 Aligned_cols=151 Identities=14% Similarity=0.086 Sum_probs=98.4
Q ss_pred CCeEEEEEEcCCCCCccCCCcccc-CCCCceEEEccCcCCcchhhhHHHhhccCCcceeecCCCCC-------CCCcccc
Q 001993 551 WKARHLMITGETRSEMVPFPSMVY-DETKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGLPVG-------QIPKGIK 622 (985)
Q Consensus 551 ~~~r~l~l~~~~~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~-------~lp~~i~ 622 (985)
..++++.+.++...... ...+. .+++|++|.+.++... ....++.++.++++|++|+++... .++....
T Consensus 105 ~~L~~L~L~~~~~~~~~--~~~l~~~~~~L~~L~L~~~~~~-~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDC--LELIAKSFKNFKVLVLSSCEGF-STDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD 181 (594)
T ss_dssp TTCCEEEEESCBCCHHH--HHHHHHHCTTCCEEEEESCEEE-EHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred CCCCeEEeeCcEEcHHH--HHHHHHhCCCCcEEeCCCcCCC-CHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence 35677888876653211 22222 5789999999887421 122356667789999999998322 2333345
Q ss_pred cCCCCCeEecCCCC-Cc--cccchhhcCCCCCcEeeccCcccccccchhhhhccccceeecccccc----cccccCCCcC
Q 001993 623 KLIHLRYLALGENP-WI--KELPEALCELCNLQTLDVSLCHYLKRLPERIGQLINLRHLMNSKEEW----SRLSYMPRGM 695 (985)
Q Consensus 623 ~l~~Lr~L~L~~~~-~i--~~lP~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~n~~----~~l~~~p~~i 695 (985)
.+++|++|++++|. .+ ..++..+..+++|++|++++|..+..+|..+..+++|++|+++.+.. ..+..++..+
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l 261 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVAL 261 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHH
T ss_pred cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHH
Confidence 67799999999885 12 22344455689999999999976777888888999999998762210 0122334455
Q ss_pred CCCCCCCcc
Q 001993 696 ERLTGLRTL 704 (985)
Q Consensus 696 ~~L~~L~~L 704 (985)
+++++|+.|
T Consensus 262 ~~~~~L~~L 270 (594)
T 2p1m_B 262 SGCKELRCL 270 (594)
T ss_dssp HTCTTCCEE
T ss_pred hcCCCcccc
Confidence 666666666
No 82
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.46 E-value=2.2e-13 Score=147.95 Aligned_cols=80 Identities=16% Similarity=0.163 Sum_probs=65.5
Q ss_pred ccccCCCCCeEecCCCCCccccchhhcCCCCCcEeeccCcccccccchhhhhccccceeecccccccccccCCCcCCCCC
Q 001993 620 GIKKLIHLRYLALGENPWIKELPEALCELCNLQTLDVSLCHYLKRLPERIGQLINLRHLMNSKEEWSRLSYMPRGMERLT 699 (985)
Q Consensus 620 ~i~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~n~~~~l~~~p~~i~~L~ 699 (985)
....+.+|++|++++|. +..+| .+..+++|++|++++|. +..+|. +..+++|++|++++|.. ..+| .+..++
T Consensus 36 ~~~~l~~L~~L~l~~~~-i~~l~-~~~~l~~L~~L~L~~n~-i~~~~~-~~~l~~L~~L~L~~n~l---~~~~-~~~~l~ 107 (308)
T 1h6u_A 36 TQADLDGITTLSAFGTG-VTTIE-GVQYLNNLIGLELKDNQ-ITDLAP-LKNLTKITELELSGNPL---KNVS-AIAGLQ 107 (308)
T ss_dssp CHHHHHTCCEEECTTSC-CCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCCSCCEEECCSCCC---SCCG-GGTTCT
T ss_pred cHHHcCCcCEEEeeCCC-ccCch-hhhccCCCCEEEccCCc-CCCChh-HccCCCCCEEEccCCcC---CCch-hhcCCC
Confidence 35678899999999998 88888 58999999999999998 888887 99999999999996544 3443 567777
Q ss_pred CCCccCce
Q 001993 700 GLRTLGAF 707 (985)
Q Consensus 700 ~L~~L~~~ 707 (985)
+|+.|++.
T Consensus 108 ~L~~L~l~ 115 (308)
T 1h6u_A 108 SIKTLDLT 115 (308)
T ss_dssp TCCEEECT
T ss_pred CCCEEECC
Confidence 77777664
No 83
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.45 E-value=3.3e-13 Score=149.59 Aligned_cols=230 Identities=14% Similarity=0.122 Sum_probs=146.2
Q ss_pred CCCCCCcccccCCCCCeEecCCCCCccccch-hhcCCCCCcEeeccCcccccccchh-hhhccccceeeccccccccccc
Q 001993 613 PVGQIPKGIKKLIHLRYLALGENPWIKELPE-ALCELCNLQTLDVSLCHYLKRLPER-IGQLINLRHLMNSKEEWSRLSY 690 (985)
Q Consensus 613 ~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lP~-~i~~L~~L~~L~l~~~~~l~~lP~~-i~~L~~L~~L~l~~n~~~~l~~ 690 (985)
.++.+|..+ ..++++|+|++|. |+.+|. .+..|++|++|+|++|...+.+|.. +.+|++|.++... .++.+..
T Consensus 20 ~Lt~iP~~l--~~~l~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~--~~N~l~~ 94 (350)
T 4ay9_X 20 KVTEIPSDL--PRNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE--KANNLLY 94 (350)
T ss_dssp TCCSCCTTC--CTTCSEEEEESCC-CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE--EETTCCE
T ss_pred CCCccCcCc--CCCCCEEEccCCc-CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc--cCCcccc
Confidence 567788776 3689999999998 999986 5789999999999999866767754 5778888876554 3445666
Q ss_pred CC-CcCCCCCCCCccCceEecCCCcccccCCchhhhccccCcceeeecccccccCCCCcchhhhcccccccccccEEEEE
Q 001993 691 MP-RGMERLTGLRTLGAFVASGGKSSKACSSLKSLNKLKHLEGSLTLRGLGNERDLGDDNDDEKVDLKSKMKLVDLHLRF 769 (985)
Q Consensus 691 ~p-~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 769 (985)
+| ..++.+++|+.|++..+.....+.. ..+..++ +. .+.+.....+.. +
T Consensus 95 l~~~~f~~l~~L~~L~l~~n~l~~~~~~----~~~~~~~-l~-~l~l~~~~~i~~--------------------l---- 144 (350)
T 4ay9_X 95 INPEAFQNLPNLQYLLISNTGIKHLPDV----HKIHSLQ-KV-LLDIQDNINIHT--------------------I---- 144 (350)
T ss_dssp ECTTSBCCCTTCCEEEEEEECCSSCCCC----TTCCBSS-CE-EEEEESCTTCCE--------------------E----
T ss_pred cCchhhhhccccccccccccccccCCch----hhcccch-hh-hhhhcccccccc--------------------c----
Confidence 65 4578899999998877654432111 1111111 11 122211111100 0
Q ss_pred cCCCCcchhHhhhcCCCC-CCCCCeEEEeeccCCCCCCCChhhhccccccEEeEeccCCCCcCCC--CCCCCccceeecc
Q 001993 770 DSTTKTKDHRVVLECLQP-PSSLEKLGIYGYAGDTISPTSDWMLSLAKLRVLTLRFCNECECLPP--LGKLPCLETLVLE 846 (985)
Q Consensus 770 ~~~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~--l~~l~~L~~L~L~ 846 (985)
....+.. ...|+.|++++|....+ |.......+|+.|.+.+|..++.+|. ++.+++|+.|+|+
T Consensus 145 -----------~~~~f~~~~~~l~~L~L~~N~i~~i---~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs 210 (350)
T 4ay9_X 145 -----------ERNSFVGLSFESVILWLNKNGIQEI---HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDIS 210 (350)
T ss_dssp -----------CTTSSTTSBSSCEEEECCSSCCCEE---CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECT
T ss_pred -----------cccchhhcchhhhhhccccccccCC---ChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcC
Confidence 0001111 23567777777776666 55555566788888877767777774 6778888888888
Q ss_pred CCCCceEeCCcccCCchhhhhhhhhhhcccccccCCCCCccceeeccccccccccccccccCcccccccccceeecc
Q 001993 847 GMSSVKRLGNGFLGIAEDHQARADQAETASSIIRDTAFPRLETLEFLDMEKWEEWDDCEIAGGKTIMPRLRHLSICW 923 (985)
Q Consensus 847 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~lp~L~~L~i~~ 923 (985)
++. ++.+|. .+|.+|+.|.+.++.+++.++.. ..|++|+.+++.+
T Consensus 211 ~N~-l~~lp~-------------------------~~~~~L~~L~~l~~~~l~~lP~l------~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 211 RTR-IHSLPS-------------------------YGLENLKKLRARSTYNLKKLPTL------EKLVALMEASLTY 255 (350)
T ss_dssp TSC-CCCCCS-------------------------SSCTTCCEEECTTCTTCCCCCCT------TTCCSCCEEECSC
T ss_pred CCC-cCccCh-------------------------hhhccchHhhhccCCCcCcCCCc------hhCcChhhCcCCC
Confidence 753 666654 24667777777777666666542 2577777777643
No 84
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.45 E-value=1e-12 Score=141.26 Aligned_cols=60 Identities=17% Similarity=0.145 Sum_probs=44.0
Q ss_pred cccCCCCCeEecCCCCCccccchhhcCCCCCcEeeccCccccccc-chhhhhccccceeeccccc
Q 001993 621 IKKLIHLRYLALGENPWIKELPEALCELCNLQTLDVSLCHYLKRL-PERIGQLINLRHLMNSKEE 684 (985)
Q Consensus 621 i~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~l-P~~i~~L~~L~~L~l~~n~ 684 (985)
++++.+|+.++++++. +..+|..+. .+|++|++++|. +..+ |..+..+++|++|++++|.
T Consensus 6 ~~~l~~l~~l~~~~~~-l~~ip~~~~--~~l~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~n~ 66 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRN-LTALPPDLP--KDTTILHLSENL-LYTFSLATLMPYTRLTQLNLDRAE 66 (290)
T ss_dssp EECSTTCCEEECTTSC-CSSCCSCCC--TTCCEEECTTSC-CSEEEGGGGTTCTTCCEEECTTSC
T ss_pred ccccCCccEEECCCCC-CCcCCCCCC--CCCCEEEcCCCc-CCccCHHHhhcCCCCCEEECCCCc
Confidence 5677778888888877 788887654 678888888887 5444 4567778888888887543
No 85
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.44 E-value=4.4e-13 Score=142.89 Aligned_cols=209 Identities=19% Similarity=0.245 Sum_probs=128.4
Q ss_pred ccccCCCCCeEecCCCCCccccchhhcCCCCCcEeeccCcccccccchhhhhccccceeecccccccccccCCCc-CCCC
Q 001993 620 GIKKLIHLRYLALGENPWIKELPEALCELCNLQTLDVSLCHYLKRLPERIGQLINLRHLMNSKEEWSRLSYMPRG-MERL 698 (985)
Q Consensus 620 ~i~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~n~~~~l~~~p~~-i~~L 698 (985)
....+.+|+.|++++|. +..++. +..+++|++|++++|. +..+| .+..+++|++|++++|.. ..+|.. ++++
T Consensus 36 ~~~~l~~L~~L~l~~~~-i~~~~~-l~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~L~~n~l---~~~~~~~~~~l 108 (272)
T 3rfs_A 36 TQNELNSIDQIIANNSD-IKSVQG-IQYLPNVRYLALGGNK-LHDIS-ALKELTNLTYLILTGNQL---QSLPNGVFDKL 108 (272)
T ss_dssp CHHHHTTCCEEECTTSC-CCCCTT-GGGCTTCCEEECTTSC-CCCCG-GGTTCTTCCEEECTTSCC---CCCCTTTTTTC
T ss_pred ccccccceeeeeeCCCC-cccccc-cccCCCCcEEECCCCC-CCCch-hhcCCCCCCEEECCCCcc---CccChhHhcCC
Confidence 35567778888888777 766654 7778888888888877 66654 577788888888875433 344433 4566
Q ss_pred CCCCccCceEecCCCcccccCCchhhhccccCcceeeecccccccCCCCcchhhhcccccccccccEEEEEcCCCCcchh
Q 001993 699 TGLRTLGAFVASGGKSSKACSSLKSLNKLKHLEGSLTLRGLGNERDLGDDNDDEKVDLKSKMKLVDLHLRFDSTTKTKDH 778 (985)
Q Consensus 699 ~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 778 (985)
++|++|++..+.... +
T Consensus 109 ~~L~~L~L~~n~l~~----------------~------------------------------------------------ 124 (272)
T 3rfs_A 109 TNLKELVLVENQLQS----------------L------------------------------------------------ 124 (272)
T ss_dssp TTCCEEECTTSCCCC----------------C------------------------------------------------
T ss_pred cCCCEEECCCCcCCc----------------c------------------------------------------------
Confidence 666665543111000 0
Q ss_pred HhhhcCCCCCCCCCeEEEeeccCCCCCCCChhhhccccccEEeEeccCCCCcCCC--CCCCCccceeeccCCCCceEeCC
Q 001993 779 RVVLECLQPPSSLEKLGIYGYAGDTISPTSDWMLSLAKLRVLTLRFCNECECLPP--LGKLPCLETLVLEGMSSVKRLGN 856 (985)
Q Consensus 779 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~--l~~l~~L~~L~L~~~~~l~~l~~ 856 (985)
....+..+++|+.|++++|....+. |.++..+++|+.|++++|. ++.+++ ++.+++|+.|+|++|. +..++.
T Consensus 125 --~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~ 198 (272)
T 3rfs_A 125 --PDGVFDKLTNLTYLNLAHNQLQSLP--KGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQNQ-LKSVPD 198 (272)
T ss_dssp --CTTTTTTCTTCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CSCCCT
T ss_pred --CHHHhccCCCCCEEECCCCccCccC--HHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEECCCCc-CCccCH
Confidence 0011223456666666666655552 3445677788888888874 444443 6778888888888764 444433
Q ss_pred cccCCchhhhhhhhhhhcccccccCCCCCccceeeccccccccccccccccCcccccccccceeecccccCCCCCCCCCC
Q 001993 857 GFLGIAEDHQARADQAETASSIIRDTAFPRLETLEFLDMEKWEEWDDCEIAGGKTIMPRLRHLSICWSPELKALPDYILG 936 (985)
Q Consensus 857 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~lp~L~~L~i~~c~~L~~lp~~~~~ 936 (985)
..+ ..+++|+.|++.+++ | .+.+|+|+.|.+..+.....+|..+..
T Consensus 199 ~~~----------------------~~l~~L~~L~l~~N~----~--------~~~~~~l~~l~~~~n~~~g~ip~~~~~ 244 (272)
T 3rfs_A 199 GVF----------------------DRLTSLQYIWLHDNP----W--------DCTCPGIRYLSEWINKHSGVVRNSAGS 244 (272)
T ss_dssp TTT----------------------TTCTTCCEEECCSSC----B--------CCCTTTTHHHHHHHHHTGGGBBCTTSC
T ss_pred HHH----------------------hCCcCCCEEEccCCC----c--------cccCcHHHHHHHHHHhCCCcccCcccc
Confidence 221 346788888887753 1 135778888888777555567766654
Q ss_pred CCC
Q 001993 937 STS 939 (985)
Q Consensus 937 l~~ 939 (985)
++.
T Consensus 245 ~~~ 247 (272)
T 3rfs_A 245 VAP 247 (272)
T ss_dssp BCG
T ss_pred cCC
Confidence 443
No 86
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.43 E-value=1.2e-12 Score=139.40 Aligned_cols=191 Identities=23% Similarity=0.277 Sum_probs=103.0
Q ss_pred eeecCC--CCCCCCcccccCCCCCeEecCCCCCccccch-hhcCCCCCcEeeccCcccccccchhh-hhccccceeeccc
Q 001993 607 RSIDGL--PVGQIPKGIKKLIHLRYLALGENPWIKELPE-ALCELCNLQTLDVSLCHYLKRLPERI-GQLINLRHLMNSK 682 (985)
Q Consensus 607 r~L~l~--~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lP~-~i~~L~~L~~L~l~~~~~l~~lP~~i-~~L~~L~~L~l~~ 682 (985)
+.++++ .+..+|..+. .+|++|++++|. +..+|. .+..+++|++|++++|. +..+|..+ ..+++|++|++++
T Consensus 19 ~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 19 NSVDCSSKKLTAIPSNIP--ADTKKLDLQSNK-LSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSC-CSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEECCS
T ss_pred CEEEccCCCCCccCCCCC--CCCCEEECcCCC-CCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEECCC
Confidence 344444 3444554443 355666666655 555543 45556666666666555 45555433 4556666666654
Q ss_pred ccccccccCCC-cCCCCCCCCccCceEecCCCcccccCCchhhhccccCcceeeecccccccCCCCcchhhhcccccccc
Q 001993 683 EEWSRLSYMPR-GMERLTGLRTLGAFVASGGKSSKACSSLKSLNKLKHLEGSLTLRGLGNERDLGDDNDDEKVDLKSKMK 761 (985)
Q Consensus 683 n~~~~l~~~p~-~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~~~~l~~~~~ 761 (985)
|.. ..+|. .+..+++|++|++..+....... ..+..+++
T Consensus 95 n~l---~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-------------------------------------~~~~~l~~ 134 (270)
T 2o6q_A 95 NKL---QALPIGVFDQLVNLAELRLDRNQLKSLPP-------------------------------------RVFDSLTK 134 (270)
T ss_dssp SCC---CCCCTTTTTTCSSCCEEECCSSCCCCCCT-------------------------------------TTTTTCTT
T ss_pred CcC---CcCCHhHcccccCCCEEECCCCccCeeCH-------------------------------------HHhCcCcC
Confidence 332 33332 23455555555443222111000 01112223
Q ss_pred cccEEEEEcCCCCcchhHhhhcCCCCCCCCCeEEEeeccCCCCCCCChhhhccccccEEeEeccCCCCcCCC--CCCCCc
Q 001993 762 LVDLHLRFDSTTKTKDHRVVLECLQPPSSLEKLGIYGYAGDTISPTSDWMLSLAKLRVLTLRFCNECECLPP--LGKLPC 839 (985)
Q Consensus 762 L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~--l~~l~~ 839 (985)
|+.|+++++... ......+..+++|+.|++++|....+. +..+..+++|+.|+|++|. ++.+|. +..+++
T Consensus 135 L~~L~Ls~n~l~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~ 206 (270)
T 2o6q_A 135 LTYLSLGYNELQ-----SLPKGVFDKLTSLKELRLYNNQLKRVP--EGAFDKLTELKTLKLDNNQ-LKRVPEGAFDSLEK 206 (270)
T ss_dssp CCEEECCSSCCC-----CCCTTTTTTCTTCCEEECCSSCCSCCC--TTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTT
T ss_pred CCEEECCCCcCC-----ccCHhHccCCcccceeEecCCcCcEeC--hhHhccCCCcCEEECCCCc-CCcCCHHHhccccC
Confidence 333333332200 001122445678888888888777663 3457789999999999994 455553 778999
Q ss_pred cceeeccCCC
Q 001993 840 LETLVLEGMS 849 (985)
Q Consensus 840 L~~L~L~~~~ 849 (985)
|+.|+|++++
T Consensus 207 L~~L~l~~N~ 216 (270)
T 2o6q_A 207 LKMLQLQENP 216 (270)
T ss_dssp CCEEECCSSC
T ss_pred CCEEEecCCC
Confidence 9999999865
No 87
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.43 E-value=8.6e-13 Score=141.09 Aligned_cols=127 Identities=27% Similarity=0.256 Sum_probs=82.8
Q ss_pred CCceEEEccCcCCcchhhhHHHhhccCCcceeecCC--CCCCCCc-ccccCCCCCeEecCCCCCccccc-hhhcCCCCCc
Q 001993 577 TKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL--PVGQIPK-GIKKLIHLRYLALGENPWIKELP-EALCELCNLQ 652 (985)
Q Consensus 577 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~--~~~~lp~-~i~~l~~Lr~L~L~~~~~i~~lP-~~i~~L~~L~ 652 (985)
+.|+.|+++++.. ....+..|.++++|++|+++ .+..++. .+..+++|++|++++|. +..+| ..+..+++|+
T Consensus 28 ~~l~~L~ls~n~l---~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~ 103 (276)
T 2z62_A 28 FSTKNLDLSFNPL---RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQ 103 (276)
T ss_dssp TTCCEEECTTCCC---CEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCC
T ss_pred CCccEEECCCCcc---cccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc-cCccChhhhcCCcccc
Confidence 4688888877753 22223356777777777777 4555543 57777778888887777 65554 4577777888
Q ss_pred EeeccCcccccccch-hhhhccccceeecccccccccccCCCcCCCCCCCCccCceEe
Q 001993 653 TLDVSLCHYLKRLPE-RIGQLINLRHLMNSKEEWSRLSYMPRGMERLTGLRTLGAFVA 709 (985)
Q Consensus 653 ~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~n~~~~l~~~p~~i~~L~~L~~L~~~~~ 709 (985)
+|++++|. +..++. .+..+++|++|++++|.... ..+|..++++++|++|++..+
T Consensus 104 ~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~l~~~~~~l~~L~~L~Ls~N 159 (276)
T 2z62_A 104 KLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQS-FKLPEYFSNLTNLEHLDLSSN 159 (276)
T ss_dssp EEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCC-CCCCGGGGGCTTCCEEECCSS
T ss_pred EEECCCCC-ccccCchhcccCCCCCEEECcCCccce-ecCchhhccCCCCCEEECCCC
Confidence 88887776 555544 56777778888777554322 125666677777777766543
No 88
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.42 E-value=7.2e-13 Score=141.71 Aligned_cols=87 Identities=23% Similarity=0.386 Sum_probs=58.7
Q ss_pred CCCCCCcccccCCCCCeEecCCCCCccccch-hhcCCCCCcEeeccCcccccccch-hhhhccccceeeccccccccccc
Q 001993 613 PVGQIPKGIKKLIHLRYLALGENPWIKELPE-ALCELCNLQTLDVSLCHYLKRLPE-RIGQLINLRHLMNSKEEWSRLSY 690 (985)
Q Consensus 613 ~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lP~-~i~~L~~L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~n~~~~l~~ 690 (985)
.+..+|..+. .+|++|++++|. +..+|. .+.++++|++|++++|. +..+|. .+..+++|++|++++|.. ..
T Consensus 18 ~l~~ip~~l~--~~l~~L~ls~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l---~~ 90 (276)
T 2z62_A 18 NFYKIPDNLP--FSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPI---QS 90 (276)
T ss_dssp CCSSCCSSSC--TTCCEEECTTCC-CCEECTTTTTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCC---CE
T ss_pred CccccCCCCC--CCccEEECCCCc-ccccCHhHhccccCCcEEECCCCc-CCccCHHHccCCcCCCEEECCCCcc---Cc
Confidence 3455666553 468888888887 776665 67788888888888886 555554 577788888888875543 33
Q ss_pred CC-CcCCCCCCCCccCc
Q 001993 691 MP-RGMERLTGLRTLGA 706 (985)
Q Consensus 691 ~p-~~i~~L~~L~~L~~ 706 (985)
++ ..+.++++|++|++
T Consensus 91 ~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 91 LALGAFSGLSSLQKLVA 107 (276)
T ss_dssp ECTTTTTTCTTCCEEEC
T ss_pred cChhhhcCCccccEEEC
Confidence 33 44666666666655
No 89
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.42 E-value=1.2e-12 Score=140.73 Aligned_cols=195 Identities=19% Similarity=0.200 Sum_probs=102.5
Q ss_pred ccCCcceeecCC--CCCCCCcccccCCCCCeEecCCCCCcccc-chhhcCCCCCcEeeccCcccccccchhhhhccccce
Q 001993 601 DRLTCLRSIDGL--PVGQIPKGIKKLIHLRYLALGENPWIKEL-PEALCELCNLQTLDVSLCHYLKRLPERIGQLINLRH 677 (985)
Q Consensus 601 ~~l~~Lr~L~l~--~~~~lp~~i~~l~~Lr~L~L~~~~~i~~l-P~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~ 677 (985)
.+++.++.++++ .+..+|..+. .+|++|+|++|. +..+ |..+..+++|++|++++|. +..+|.. ..+++|++
T Consensus 7 ~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-~~l~~L~~ 81 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENL-LYTFSLATLMPYTRLTQLNLDRAE-LTKLQVD-GTLPVLGT 81 (290)
T ss_dssp ECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSC-CSEEEGGGGTTCTTCCEEECTTSC-CCEEECC-SCCTTCCE
T ss_pred cccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCc-CCccCHHHhhcCCCCCEEECCCCc-cCcccCC-CCCCcCCE
Confidence 344445555554 4445554443 455556665555 4443 3345555666666666555 5445432 45555666
Q ss_pred eecccccccccccCCCcCCCCCCCCccCceEecCCCcccccCCchhhhccccCcceeeecccccccCCCCcchhhhcccc
Q 001993 678 LMNSKEEWSRLSYMPRGMERLTGLRTLGAFVASGGKSSKACSSLKSLNKLKHLEGSLTLRGLGNERDLGDDNDDEKVDLK 757 (985)
Q Consensus 678 L~l~~n~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~~~~l~ 757 (985)
|++++|.. ..+|..+..+++|+.|++..+.....+.. .+..++
T Consensus 82 L~Ls~N~l---~~l~~~~~~l~~L~~L~l~~N~l~~l~~~--~~~~l~-------------------------------- 124 (290)
T 1p9a_G 82 LDLSHNQL---QSLPLLGQTLPALTVLDVSFNRLTSLPLG--ALRGLG-------------------------------- 124 (290)
T ss_dssp EECCSSCC---SSCCCCTTTCTTCCEEECCSSCCCCCCSS--TTTTCT--------------------------------
T ss_pred EECCCCcC---CcCchhhccCCCCCEEECCCCcCcccCHH--HHcCCC--------------------------------
Confidence 66654322 34555555555555555443322210000 112222
Q ss_pred cccccccEEEEEcCCCCcchhHhhhcCCCCCCCCCeEEEeeccCCCCCCCCh-hhhccccccEEeEeccCCCCcCC-CCC
Q 001993 758 SKMKLVDLHLRFDSTTKTKDHRVVLECLQPPSSLEKLGIYGYAGDTISPTSD-WMLSLAKLRVLTLRFCNECECLP-PLG 835 (985)
Q Consensus 758 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~-~~~~l~~L~~L~L~~~~~~~~l~-~l~ 835 (985)
+|+.|+++.+... ......+..+++|+.|++++|....+ |. .+..+++|+.|+|++|. ++.+| .+.
T Consensus 125 ---~L~~L~L~~N~l~-----~~~~~~~~~l~~L~~L~L~~N~l~~l---~~~~~~~l~~L~~L~L~~N~-l~~ip~~~~ 192 (290)
T 1p9a_G 125 ---ELQELYLKGNELK-----TLPPGLLTPTPKLEKLSLANNNLTEL---PAGLLNGLENLDTLLLQENS-LYTIPKGFF 192 (290)
T ss_dssp ---TCCEEECTTSCCC-----CCCTTTTTTCTTCCEEECTTSCCSCC---CTTTTTTCTTCCEEECCSSC-CCCCCTTTT
T ss_pred ---CCCEEECCCCCCC-----ccChhhcccccCCCEEECCCCcCCcc---CHHHhcCcCCCCEEECCCCc-CCccChhhc
Confidence 2222222222100 00112234567788888888877766 44 45678899999998884 44555 466
Q ss_pred CCCccceeeccCCC
Q 001993 836 KLPCLETLVLEGMS 849 (985)
Q Consensus 836 ~l~~L~~L~L~~~~ 849 (985)
.+++|+.|.|.+++
T Consensus 193 ~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 193 GSHLLPFAFLHGNP 206 (290)
T ss_dssp TTCCCSEEECCSCC
T ss_pred ccccCCeEEeCCCC
Confidence 77889999988765
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.39 E-value=3.8e-14 Score=156.60 Aligned_cols=251 Identities=19% Similarity=0.168 Sum_probs=137.2
Q ss_pred CceEEEccCcCCcchhhhHHHhhccC--CcceeecCC--CCCCCCcccccCCCCCeEecCCCCCccc--cchhhcCCCCC
Q 001993 578 KLRSLVLDQRLSFKPRIALSKLFDRL--TCLRSIDGL--PVGQIPKGIKKLIHLRYLALGENPWIKE--LPEALCELCNL 651 (985)
Q Consensus 578 ~Lr~L~l~~~~~~~~~~~~~~~~~~l--~~Lr~L~l~--~~~~lp~~i~~l~~Lr~L~L~~~~~i~~--lP~~i~~L~~L 651 (985)
.++.++++++... +..+..+ +.++.|+++ .+...+..+..+.+|++|++++|. +.. +|..+..+++|
T Consensus 48 ~~~~l~l~~~~~~------~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~L 120 (336)
T 2ast_B 48 LWQTLDLTGKNLH------PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSV-IEVSTLHGILSQCSKL 120 (336)
T ss_dssp TSSEEECTTCBCC------HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCE-ECHHHHHHHHTTBCCC
T ss_pred hheeeccccccCC------HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCC-cCHHHHHHHHhhCCCC
Confidence 3667777766431 2334444 567777766 344444456667777777777776 442 66667777777
Q ss_pred cEeeccCcccccccchhhhhccccceeecccccccccc--cCCCcCCCCCCCCccCceEecCCCcccccCCchhhhcccc
Q 001993 652 QTLDVSLCHYLKRLPERIGQLINLRHLMNSKEEWSRLS--YMPRGMERLTGLRTLGAFVASGGKSSKACSSLKSLNKLKH 729 (985)
Q Consensus 652 ~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~n~~~~l~--~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~ 729 (985)
++|++++|......|..+..+++|++|++++ |..+. .+|..+.++++|
T Consensus 121 ~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~--~~~l~~~~l~~~~~~~~~L---------------------------- 170 (336)
T 2ast_B 121 QNLSLEGLRLSDPIVNTLAKNSNLVRLNLSG--CSGFSEFALQTLLSSCSRL---------------------------- 170 (336)
T ss_dssp SEEECTTCBCCHHHHHHHTTCTTCSEEECTT--CBSCCHHHHHHHHHHCTTC----------------------------
T ss_pred CEEeCcCcccCHHHHHHHhcCCCCCEEECCC--CCCCCHHHHHHHHhcCCCC----------------------------
Confidence 7777777763335566666777777777763 32111 122222222222
Q ss_pred CcceeeecccccccCCCCcchhhhcccccccccccEEEEEc-CCCCcchhHhhhcCCCCCC-CCCeEEEeeccC-CCCCC
Q 001993 730 LEGSLTLRGLGNERDLGDDNDDEKVDLKSKMKLVDLHLRFD-STTKTKDHRVVLECLQPPS-SLEKLGIYGYAG-DTISP 806 (985)
Q Consensus 730 L~~~L~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~-~~~~~ 806 (985)
+.|+++++ . . ....+...+..++ +|+.|++++|.. .....
T Consensus 171 ---------------------------------~~L~l~~~~~-l---~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~ 213 (336)
T 2ast_B 171 ---------------------------------DELNLSWCFD-F---TEKHVQVAVAHVSETITQLNLSGYRKNLQKSD 213 (336)
T ss_dssp ---------------------------------CEEECCCCTT-C---CHHHHHHHHHHSCTTCCEEECCSCGGGSCHHH
T ss_pred ---------------------------------CEEcCCCCCC-c---ChHHHHHHHHhcccCCCEEEeCCCcccCCHHH
Confidence 23333222 1 0 0011112223345 777777777741 11011
Q ss_pred CChhhhccccccEEeEeccCCCC--cCCCCCCCCccceeeccCCCCceEeCCcccCCchhhhhhhhhhhcccccccCCCC
Q 001993 807 TSDWMLSLAKLRVLTLRFCNECE--CLPPLGKLPCLETLVLEGMSSVKRLGNGFLGIAEDHQARADQAETASSIIRDTAF 884 (985)
Q Consensus 807 ~p~~~~~l~~L~~L~L~~~~~~~--~l~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 884 (985)
+|..+..+++|+.|+|++|..++ .++.++.+++|+.|+|++|..+. +..+.. ...+
T Consensus 214 l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~~--------------------l~~~ 271 (336)
T 2ast_B 214 LSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDII--PETLLE--------------------LGEI 271 (336)
T ss_dssp HHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCC--GGGGGG--------------------GGGC
T ss_pred HHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCC--HHHHHH--------------------HhcC
Confidence 15566678888999998886443 34567788889999998876221 111100 1347
Q ss_pred CccceeeccccccccccccccccCccccc-ccccceeecccccCCC-CCCCC
Q 001993 885 PRLETLEFLDMEKWEEWDDCEIAGGKTIM-PRLRHLSICWSPELKA-LPDYI 934 (985)
Q Consensus 885 p~L~~L~l~~~~~L~~~~~~~~~~~~~~l-p~L~~L~i~~c~~L~~-lp~~~ 934 (985)
|+|++|++.+| +.... ...+ .+|+.|++.+| .++. .|..+
T Consensus 272 ~~L~~L~l~~~--i~~~~-------~~~l~~~l~~L~l~~n-~l~~~~~~~~ 313 (336)
T 2ast_B 272 PTLKTLQVFGI--VPDGT-------LQLLKEALPHLQINCS-HFTTIARPTI 313 (336)
T ss_dssp TTCCEEECTTS--SCTTC-------HHHHHHHSTTSEESCC-CSCCTTCSSC
T ss_pred CCCCEEeccCc--cCHHH-------HHHHHhhCcceEEecc-cCccccCCcc
Confidence 88888888887 22211 1123 34677777655 4444 34433
No 91
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.39 E-value=3.2e-12 Score=141.62 Aligned_cols=248 Identities=16% Similarity=0.095 Sum_probs=164.1
Q ss_pred CcccccCCCCCeEecCCCCCccccchhhcCCCCCcEeeccCcccccccchh-hhhccccceeecccccccccccCCCc-C
Q 001993 618 PKGIKKLIHLRYLALGENPWIKELPEALCELCNLQTLDVSLCHYLKRLPER-IGQLINLRHLMNSKEEWSRLSYMPRG-M 695 (985)
Q Consensus 618 p~~i~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lP~~-i~~L~~L~~L~l~~n~~~~l~~~p~~-i 695 (985)
|+.++.+. -+.++.+++. ++++|..+ ..+|++|+|++|+ ++.+|.+ +.+|++|++|++++|.. .+.+|.+ +
T Consensus 3 p~~~C~C~-~~~v~C~~~~-Lt~iP~~l--~~~l~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i--~~~i~~~~f 75 (350)
T 4ay9_X 3 HHRICHCS-NRVFLCQESK-VTEIPSDL--PRNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDV--LEVIEADVF 75 (350)
T ss_dssp CCSSSEEE-TTEEEEESTT-CCSCCTTC--CTTCSEEEEESCC-CSEECTTSSTTCTTCCEEEEECCTT--CCEECTTSB
T ss_pred CCCccEee-CCEEEecCCC-CCccCcCc--CCCCCEEEccCCc-CCCcCHHHHcCCCCCCEEECcCCCC--CCccChhHh
Confidence 33344443 3567788887 99999876 4789999999998 8899864 78999999999996543 2345543 5
Q ss_pred CCCCCCCccCceEecCCCcccccCCchhhhccccCcceeeecccccccCCCCcchhhhcccccccccccEEEEEcCCCCc
Q 001993 696 ERLTGLRTLGAFVASGGKSSKACSSLKSLNKLKHLEGSLTLRGLGNERDLGDDNDDEKVDLKSKMKLVDLHLRFDSTTKT 775 (985)
Q Consensus 696 ~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 775 (985)
.++++|+.+..... +.+..+. ...+..+++|+.|+++.+.....
T Consensus 76 ~~L~~l~~~l~~~~---------------------------N~l~~l~---------~~~f~~l~~L~~L~l~~n~l~~~ 119 (350)
T 4ay9_X 76 SNLPKLHEIRIEKA---------------------------NNLLYIN---------PEAFQNLPNLQYLLISNTGIKHL 119 (350)
T ss_dssp CSCTTCCEEEEEEE---------------------------TTCCEEC---------TTSBCCCTTCCEEEEEEECCSSC
T ss_pred hcchhhhhhhcccC---------------------------CcccccC---------chhhhhccccccccccccccccC
Confidence 66666554322211 1110000 01244556677777776651100
Q ss_pred chhHhhhcCCCCCCCCCeEEEeecc-CCCCCCCChhhhcc-ccccEEeEeccCCCCcCC-CCCCCCccceeeccCCCCce
Q 001993 776 KDHRVVLECLQPPSSLEKLGIYGYA-GDTISPTSDWMLSL-AKLRVLTLRFCNECECLP-PLGKLPCLETLVLEGMSSVK 852 (985)
Q Consensus 776 ~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~p~~~~~l-~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~ 852 (985)
.........++..|++.++. ...+. +..+..+ ..|+.|+|++|. ++.+| .....++|+.|.+.+++.++
T Consensus 120 -----~~~~~~~~~~l~~l~l~~~~~i~~l~--~~~f~~~~~~l~~L~L~~N~-i~~i~~~~f~~~~L~~l~l~~~n~l~ 191 (350)
T 4ay9_X 120 -----PDVHKIHSLQKVLLDIQDNINIHTIE--RNSFVGLSFESVILWLNKNG-IQEIHNSAFNGTQLDELNLSDNNNLE 191 (350)
T ss_dssp -----CCCTTCCBSSCEEEEEESCTTCCEEC--TTSSTTSBSSCEEEECCSSC-CCEECTTSSTTEEEEEEECTTCTTCC
T ss_pred -----Cchhhcccchhhhhhhcccccccccc--ccchhhcchhhhhhcccccc-ccCCChhhccccchhHHhhccCCccc
Confidence 00111223456677776543 33331 2334444 468889999984 55555 34567889999999888888
Q ss_pred EeCCcccCCchhhhhhhhhhhcccccccCCCCCccceeeccccccccccccccccCcccccccccceeecccccCCCCCC
Q 001993 853 RLGNGFLGIAEDHQARADQAETASSIIRDTAFPRLETLEFLDMEKWEEWDDCEIAGGKTIMPRLRHLSICWSPELKALPD 932 (985)
Q Consensus 853 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~lp~L~~L~i~~c~~L~~lp~ 932 (985)
.++.+.+ ..+++|++|++++. +++.++. ..|.+|+.|.+.+|..++.+|.
T Consensus 192 ~i~~~~f----------------------~~l~~L~~LdLs~N-~l~~lp~-------~~~~~L~~L~~l~~~~l~~lP~ 241 (350)
T 4ay9_X 192 ELPNDVF----------------------HGASGPVILDISRT-RIHSLPS-------YGLENLKKLRARSTYNLKKLPT 241 (350)
T ss_dssp CCCTTTT----------------------TTEECCSEEECTTS-CCCCCCS-------SSCTTCCEEECTTCTTCCCCCC
T ss_pred CCCHHHh----------------------ccCcccchhhcCCC-CcCccCh-------hhhccchHhhhccCCCcCcCCC
Confidence 8887643 35789999999984 5666654 2588999999999999999995
Q ss_pred CCCCCCCcCeEEecC
Q 001993 933 YILGSTSLDKLLIYY 947 (985)
Q Consensus 933 ~~~~l~~L~~L~i~~ 947 (985)
+..+++|+.+++.+
T Consensus 242 -l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 242 -LEKLVALMEASLTY 255 (350)
T ss_dssp -TTTCCSCCEEECSC
T ss_pred -chhCcChhhCcCCC
Confidence 78899999999975
No 92
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.38 E-value=5.2e-13 Score=145.40 Aligned_cols=229 Identities=15% Similarity=0.069 Sum_probs=144.1
Q ss_pred CCCCceEEEccCcCCcchhhhHHHh--hccCCcceeecCC--CCC-CCCccc--ccCCCCCeEecCCCCCccc-cc----
Q 001993 575 DETKLRSLVLDQRLSFKPRIALSKL--FDRLTCLRSIDGL--PVG-QIPKGI--KKLIHLRYLALGENPWIKE-LP---- 642 (985)
Q Consensus 575 ~~~~Lr~L~l~~~~~~~~~~~~~~~--~~~l~~Lr~L~l~--~~~-~lp~~i--~~l~~Lr~L~L~~~~~i~~-lP---- 642 (985)
....++.+.+.+.... ...+... +..++.|+.|+++ .+. ..|..+ ..+.+|++|+|++|. +.. .|
T Consensus 62 ~~~~l~~l~l~~~~~~--~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~~~~~~~~ 138 (310)
T 4glp_A 62 KALRVRRLTVGAAQVP--AQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVS-WATGRSWLAE 138 (310)
T ss_dssp SSCCCCEEEECSCCCB--HHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCC-CSSTTSSHHH
T ss_pred hhcceeEEEEeCCcCC--HHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeeccc-ccchhhhhHH
Confidence 3445677777665431 1111111 2344668888887 333 456666 889999999999998 554 23
Q ss_pred hhhcCCCCCcEeeccCccccccc-chhhhhccccceeecccccccccccCC--CcCCCCCCCCccCceEecCCCcccccC
Q 001993 643 EALCELCNLQTLDVSLCHYLKRL-PERIGQLINLRHLMNSKEEWSRLSYMP--RGMERLTGLRTLGAFVASGGKSSKACS 719 (985)
Q Consensus 643 ~~i~~L~~L~~L~l~~~~~l~~l-P~~i~~L~~L~~L~l~~n~~~~l~~~p--~~i~~L~~L~~L~~~~~~~~~~~~~~~ 719 (985)
..+..+++|++|++++|. +..+ |..+..+++|++|++++|.......++ ..++.+++|++|++..+....
T Consensus 139 ~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~------ 211 (310)
T 4glp_A 139 LQQWLKPGLKVLSIAQAH-SPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET------ 211 (310)
T ss_dssp HHTTBCSCCCEEEEECCS-SCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC------
T ss_pred HHhhhccCCCEEEeeCCC-cchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc------
Confidence 345578999999999998 5544 467788999999999976543222232 234678888888776443321
Q ss_pred CchhhhccccCcceeeecccccccCCCCcchhhhcccccccccccEEEEEcCCCCcchhHhhhcCCCCCCCCCeEEEeec
Q 001993 720 SLKSLNKLKHLEGSLTLRGLGNERDLGDDNDDEKVDLKSKMKLVDLHLRFDSTTKTKDHRVVLECLQPPSSLEKLGIYGY 799 (985)
Q Consensus 720 ~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 799 (985)
++.. ....+..+++|+.|++++|.-.. .....+..+..+++|+.|++++|
T Consensus 212 ----l~~~------------------------~~~l~~~l~~L~~L~Ls~N~l~~--~~p~~~~~~~~~~~L~~L~Ls~N 261 (310)
T 4glp_A 212 ----PTGV------------------------CAALAAAGVQPHSLDLSHNSLRA--TVNPSAPRCMWSSALNSLNLSFA 261 (310)
T ss_dssp ----HHHH------------------------HHHHHHHTCCCSSEECTTSCCCC--CCCSCCSSCCCCTTCCCEECCSS
T ss_pred ----hHHH------------------------HHHHHhcCCCCCEEECCCCCCCc--cchhhHHhccCcCcCCEEECCCC
Confidence 1100 00012233455555555443100 00001122223479999999999
Q ss_pred cCCCCCCCChhhhccccccEEeEeccCCCCcCCCCCCCCccceeeccCCC
Q 001993 800 AGDTISPTSDWMLSLAKLRVLTLRFCNECECLPPLGKLPCLETLVLEGMS 849 (985)
Q Consensus 800 ~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~ 849 (985)
....+ |.++. ++|+.|+|++| .++.+|.+..+++|+.|+|++++
T Consensus 262 ~l~~l---p~~~~--~~L~~L~Ls~N-~l~~~~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 262 GLEQV---PKGLP--AKLRVLDLSSN-RLNRAPQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp CCCSC---CSCCC--SCCSCEECCSC-CCCSCCCTTSCCCCSCEECSSTT
T ss_pred CCCch---hhhhc--CCCCEEECCCC-cCCCCchhhhCCCccEEECcCCC
Confidence 88877 77664 79999999999 45666778899999999999865
No 93
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.38 E-value=3.2e-12 Score=136.06 Aligned_cols=197 Identities=19% Similarity=0.251 Sum_probs=141.3
Q ss_pred CCCCeEecCCCCCccccchhhcCCCCCcEeeccCcccccccch-hhhhccccceeecccccccccccCCCc-CCCCCCCC
Q 001993 625 IHLRYLALGENPWIKELPEALCELCNLQTLDVSLCHYLKRLPE-RIGQLINLRHLMNSKEEWSRLSYMPRG-MERLTGLR 702 (985)
Q Consensus 625 ~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~n~~~~l~~~p~~-i~~L~~L~ 702 (985)
..+++++++++. ++.+|..+. .+|+.|++++|. +..+|. .+..+++|++|++++|. +..+|.. +.++++|+
T Consensus 16 ~~~~~l~~~~~~-l~~ip~~~~--~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~---l~~i~~~~~~~l~~L~ 88 (270)
T 2o6q_A 16 NNKNSVDCSSKK-LTAIPSNIP--ADTKKLDLQSNK-LSSLPSKAFHRLTKLRLLYLNDNK---LQTLPAGIFKELKNLE 88 (270)
T ss_dssp TTTTEEECTTSC-CSSCCSCCC--TTCSEEECCSSC-CSCCCTTSSSSCTTCCEEECCSSC---CSCCCTTTTSSCTTCC
T ss_pred CCCCEEEccCCC-CCccCCCCC--CCCCEEECcCCC-CCeeCHHHhcCCCCCCEEECCCCc---cCeeChhhhcCCCCCC
Confidence 357899999998 999998665 689999999998 777765 68899999999999654 3566665 47788888
Q ss_pred ccCceEecCCCcccccCCchhhhccccCcceeeecccccccCCCCcchhhhcccccccccccEEEEEcCCCCcchhHhhh
Q 001993 703 TLGAFVASGGKSSKACSSLKSLNKLKHLEGSLTLRGLGNERDLGDDNDDEKVDLKSKMKLVDLHLRFDSTTKTKDHRVVL 782 (985)
Q Consensus 703 ~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 782 (985)
+|++..+.....+. ..+..+++|+.|+++.+... ....
T Consensus 89 ~L~l~~n~l~~~~~-------------------------------------~~~~~l~~L~~L~l~~n~l~-----~~~~ 126 (270)
T 2o6q_A 89 TLWVTDNKLQALPI-------------------------------------GVFDQLVNLAELRLDRNQLK-----SLPP 126 (270)
T ss_dssp EEECCSSCCCCCCT-------------------------------------TTTTTCSSCCEEECCSSCCC-----CCCT
T ss_pred EEECCCCcCCcCCH-------------------------------------hHcccccCCCEEECCCCccC-----eeCH
Confidence 88775433221000 11233445666666544311 1112
Q ss_pred cCCCCCCCCCeEEEeeccCCCCCCCChhhhccccccEEeEeccCCCCcCCC--CCCCCccceeeccCCCCceEeCCcccC
Q 001993 783 ECLQPPSSLEKLGIYGYAGDTISPTSDWMLSLAKLRVLTLRFCNECECLPP--LGKLPCLETLVLEGMSSVKRLGNGFLG 860 (985)
Q Consensus 783 ~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~--l~~l~~L~~L~L~~~~~l~~l~~~~~~ 860 (985)
..+..+++|+.|++++|....+. +..+..+++|+.|+|++|. ++.++. +..+++|++|+|+++. +..++...+
T Consensus 127 ~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~- 201 (270)
T 2o6q_A 127 RVFDSLTKLTYLSLGYNELQSLP--KGVFDKLTSLKELRLYNNQ-LKRVPEGAFDKLTELKTLKLDNNQ-LKRVPEGAF- 201 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTT-
T ss_pred HHhCcCcCCCEEECCCCcCCccC--HhHccCCcccceeEecCCc-CcEeChhHhccCCCcCEEECCCCc-CCcCCHHHh-
Confidence 34567899999999999887772 3457789999999999994 455553 7889999999999974 666655432
Q ss_pred CchhhhhhhhhhhcccccccCCCCCccceeeccccc
Q 001993 861 IAEDHQARADQAETASSIIRDTAFPRLETLEFLDME 896 (985)
Q Consensus 861 ~~~~~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~ 896 (985)
..+++|+.|++.+.+
T Consensus 202 ---------------------~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 202 ---------------------DSLEKLKMLQLQENP 216 (270)
T ss_dssp ---------------------TTCTTCCEEECCSSC
T ss_pred ---------------------ccccCCCEEEecCCC
Confidence 357899999998754
No 94
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.38 E-value=3.3e-11 Score=135.71 Aligned_cols=294 Identities=13% Similarity=0.079 Sum_probs=179.3
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhcc------CCceEEE
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNH------FNEKIWV 252 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~------f~~~~wv 252 (985)
.++||+.+++++.+++...- . ......+.|+|++|+||||+|+.+++. .... -...+|+
T Consensus 20 ~~~gr~~~~~~l~~~l~~~~----------~---~~~~~~vll~G~~G~GKT~l~~~~~~~--~~~~~~~~~~~~~~~~i 84 (387)
T 2v1u_A 20 VLPHREAELRRLAEVLAPAL----------R---GEKPSNALLYGLTGTGKTAVARLVLRR--LEARASSLGVLVKPIYV 84 (387)
T ss_dssp CCTTCHHHHHHHHHTTGGGT----------S---SCCCCCEEECBCTTSSHHHHHHHHHHH--HHHHHHHHTCCEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHH----------c---CCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHHhccCCCeEEEEE
Confidence 79999999999999986431 0 134568999999999999999999984 3221 1246788
Q ss_pred EeCCCCCHHHHHHHHHHHhcCCCCC-CCCHHHHHHHHHHHh--cCceEEEEecCCCCCCcc--cHHHHHhhhcCC-----
Q 001993 253 CVSEPFDDIRIAKAILESLKGSATN-AVESETVLKQLRESI--EGKKFFLVLDDVWTEEPQ--NWEQLLGCLRCG----- 322 (985)
Q Consensus 253 ~~s~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~~~--~~~~l~~~l~~~----- 322 (985)
++....+...++..++.+++..... .....++...+.+.+ .+++.+|||||++..... ..+.+...+...
T Consensus 85 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~ 164 (387)
T 2v1u_A 85 NARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGD 164 (387)
T ss_dssp ETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC--
T ss_pred ECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCC
Confidence 8888888999999999998654322 234566666777776 356899999999653222 223333333211
Q ss_pred CCCcEEEEEcCchhhH----Hhhc-CcccccccCCCCChHHHHHHHHHHhcC--CCCCcccchhHHHHHHHHHHhcC---
Q 001993 323 SKESRILVTTRNEKVA----IAIG-TTKFNIIPIELLSDEDCWSIFSQLALS--RRLDIEESENFENIGRQIVSKCK--- 392 (985)
Q Consensus 323 ~~gs~iivTtR~~~v~----~~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~--~~~~~~~~~~~~~~~~~i~~~c~--- 392 (985)
..+..+|.||+..... .... ......+.+.+++.++..+++...+.. ... ...+ +....+++.++
T Consensus 165 ~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~--~~~~---~~~~~l~~~~~~~~ 239 (387)
T 2v1u_A 165 RVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPG--VLDP---DVVPLCAALAAREH 239 (387)
T ss_dssp ---CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTT--TBCS---SHHHHHHHHHHSSS
T ss_pred CceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCC--CCCH---HHHHHHHHHHHHhc
Confidence 4456788888765321 1111 111137899999999999999887532 111 1122 34566777777
Q ss_pred CChhHH-HHHHhhh---h--cC--CChHHHHHHHHhhhhhhhccccccchhhhcccCCCCcchhHHHhhhc-cCCCCccc
Q 001993 393 GLPLAV-KTLGSLL---R--FK--GKIEEWQRVLENELWELEELDEGLLGPLLLSYLDLPPPLKKCFSYCA-IFPKDSRL 463 (985)
Q Consensus 393 GlPLai-~~~~~~L---~--~~--~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl~~a-~fp~~~~i 463 (985)
|.|..+ ..+..+. . .. -+.+.+..++.... ...+.-++..|+.+.+..+..++ ++-....+
T Consensus 240 G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~----------~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~ 309 (387)
T 2v1u_A 240 GDARRALDLLRVAGEIAERRREERVRREHVYSARAEIE----------RDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPA 309 (387)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHH----------HHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCE
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHh----------hchHHHHHHcCCHHHHHHHHHHHHHhcCCCCC
Confidence 999433 3322222 1 11 14566665554421 11234456788888887776666 34322244
Q ss_pred ChhHHHHHHhh----cCcccccCccchhhHhHHHHHHHhhccccccc
Q 001993 464 EKDKLIRLWMA----QDYLKVKGREDMVVGEGYFENLAMRSLFQDFE 506 (985)
Q Consensus 464 ~~~~Li~~Wia----eg~i~~~~~~~~~~~~~~~~~L~~~~ll~~~~ 506 (985)
....+.+.... .| + .......+..+++.|...+++....
T Consensus 310 ~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~l~~L~~~gli~~~~ 352 (387)
T 2v1u_A 310 STGEIYERYKELTSTLG-L---EHVTLRRVSGIISELDMLGIVKSRV 352 (387)
T ss_dssp EHHHHHHHHHHHHHHTT-C---CCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred cHHHHHHHHHHHHHhcC-C---CCCCHHHHHHHHHHHHhCCCeEEEe
Confidence 45544333211 12 1 1112256778999999999998754
No 95
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.37 E-value=2.8e-11 Score=136.41 Aligned_cols=299 Identities=13% Similarity=0.100 Sum_probs=185.8
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccC-CceEEEEeCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHF-NEKIWVCVSEP 257 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f-~~~~wv~~s~~ 257 (985)
.++||+.+++++.+++..... . ..+..+.+.|+|++|+||||||+.+++. ..... ..++|++++..
T Consensus 18 ~l~gr~~~~~~l~~~l~~~~~---------~--~~~~~~~~li~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~i~~~~~ 84 (389)
T 1fnn_A 18 RLPHREQQLQQLDILLGNWLR---------N--PGHHYPRATLLGRPGTGKTVTLRKLWEL--YKDKTTARFVYINGFIY 84 (389)
T ss_dssp CCTTCHHHHHHHHHHHHHHHH---------S--TTSSCCEEEEECCTTSSHHHHHHHHHHH--HTTSCCCEEEEEETTTC
T ss_pred CCCChHHHHHHHHHHHHHHHc---------C--CCCCCCeEEEECCCCCCHHHHHHHHHHH--HhhhcCeeEEEEeCccC
Confidence 799999999999999875310 0 0123348999999999999999999973 33321 24678888888
Q ss_pred CCHHHHHHHHHHHhcCCCC-CCCCHHHHHHHHHHHhc--CceEEEEecCCCCCCcccHHHHHhhhcCCC----CCcEEEE
Q 001993 258 FDDIRIAKAILESLKGSAT-NAVESETVLKQLRESIE--GKKFFLVLDDVWTEEPQNWEQLLGCLRCGS----KESRILV 330 (985)
Q Consensus 258 ~~~~~~~~~i~~~l~~~~~-~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~----~gs~iiv 330 (985)
.+...++..++..++.... .......+...+.+.+. +++.+||||+++..+......+...+.... .+..||+
T Consensus 85 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~ 164 (389)
T 1fnn_A 85 RNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVI 164 (389)
T ss_dssp CSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEE
T ss_pred CCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEE
Confidence 8888999999998865432 22345566666666664 668999999997765555666665553221 4668888
Q ss_pred EcCchhhHHhhcC-----cccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhc---------CCChh
Q 001993 331 TTRNEKVAIAIGT-----TKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKC---------KGLPL 396 (985)
Q Consensus 331 TtR~~~v~~~~~~-----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c---------~GlPL 396 (985)
+|+.......+.. .....+.+.+++.++..+++...+...... ..-..+....|++.+ +|.|.
T Consensus 165 ~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~G~~r 241 (389)
T 1fnn_A 165 VGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAE---GSYSEDILQMIADITGAQTPLDTNRGDAR 241 (389)
T ss_dssp EESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCT---TSSCHHHHHHHHHHHSBSSTTCTTSCCHH
T ss_pred EECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCC---CCCCHHHHHHHHHHHhhcccCCCCCCcHH
Confidence 8887643332211 011368999999999999998875321000 011135677888888 78876
Q ss_pred HHHHHHhhhh------cCC--ChHHHHHHHHhhhhhhhccccccchhhhcccCCCCcchhHHHhhhccCC---CCcccCh
Q 001993 397 AVKTLGSLLR------FKG--KIEEWQRVLENELWELEELDEGLLGPLLLSYLDLPPPLKKCFSYCAIFP---KDSRLEK 465 (985)
Q Consensus 397 ai~~~~~~L~------~~~--~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl~~a~fp---~~~~i~~ 465 (985)
.+..+..... ... +.+....+.... ....+.-.+..|+.+.+.++..++.+. .+-.+..
T Consensus 242 ~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~----------~~~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~ 311 (389)
T 1fnn_A 242 LAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEV----------LFGISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITF 311 (389)
T ss_dssp HHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHH----------SCCCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEH
T ss_pred HHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH----------hhhhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccH
Confidence 5544433221 111 233333332221 112233345668888888887777654 2214555
Q ss_pred hHHHHHHhh----cCcccccCccchhhHhHHHHHHHhhcccccccc
Q 001993 466 DKLIRLWMA----QDYLKVKGREDMVVGEGYFENLAMRSLFQDFER 507 (985)
Q Consensus 466 ~~Li~~Wia----eg~i~~~~~~~~~~~~~~~~~L~~~~ll~~~~~ 507 (985)
..+...+-. .|. . ..+......++++|...+++.....
T Consensus 312 ~~i~~~~~~~~~~~~~-~---~~~~~~~~~~l~~L~~~gli~~~~~ 353 (389)
T 1fnn_A 312 GDAEESYKIVCEEYGE-R---PRVHSQLWSYLNDLREKGIVETRQN 353 (389)
T ss_dssp HHHHHHHHHHHHHTTC-C---CCCHHHHHHHHHHHHHTTSSEEEEC
T ss_pred HHHHHHHHHHHHHcCC-C---CCCHHHHHHHHHHHHhCCCeEEeee
Confidence 666554433 121 1 1122455678999999999987654
No 96
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.37 E-value=1.2e-14 Score=174.26 Aligned_cols=85 Identities=19% Similarity=0.134 Sum_probs=42.1
Q ss_pred CCCCceEEEccCcCCcc-hhhhHHHhhccCCcceeecCCCCC-CCC-----cccccCCCCCeEecCCCCCccccchhhcC
Q 001993 575 DETKLRSLVLDQRLSFK-PRIALSKLFDRLTCLRSIDGLPVG-QIP-----KGIKKLIHLRYLALGENPWIKELPEALCE 647 (985)
Q Consensus 575 ~~~~Lr~L~l~~~~~~~-~~~~~~~~~~~l~~Lr~L~l~~~~-~lp-----~~i~~l~~Lr~L~L~~~~~i~~lP~~i~~ 647 (985)
.+++|++|.+.++.... ....++.+...+++|+.|+++... .++ ..+..+++|++|++++|..+..+|..+..
T Consensus 154 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~ 233 (594)
T 2p1m_B 154 TCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQR 233 (594)
T ss_dssp HCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHH
T ss_pred hCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhc
Confidence 45666666666553110 011123333455566666665332 121 11234466666666666435556666666
Q ss_pred CCCCcEeeccCc
Q 001993 648 LCNLQTLDVSLC 659 (985)
Q Consensus 648 L~~L~~L~l~~~ 659 (985)
+++|+.|++..|
T Consensus 234 ~~~L~~L~l~~~ 245 (594)
T 2p1m_B 234 APQLEELGTGGY 245 (594)
T ss_dssp CTTCSEEECSBC
T ss_pred CCcceEcccccc
Confidence 666666664443
No 97
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.35 E-value=2.9e-14 Score=160.68 Aligned_cols=215 Identities=18% Similarity=0.120 Sum_probs=123.4
Q ss_pred HHHhhccCCcceeecCCCC--CC-----CCcccccCCCCCeEecCCCCCcc----ccchhh-------cCCCCCcEeecc
Q 001993 596 LSKLFDRLTCLRSIDGLPV--GQ-----IPKGIKKLIHLRYLALGENPWIK----ELPEAL-------CELCNLQTLDVS 657 (985)
Q Consensus 596 ~~~~~~~l~~Lr~L~l~~~--~~-----lp~~i~~l~~Lr~L~L~~~~~i~----~lP~~i-------~~L~~L~~L~l~ 657 (985)
+...+..+++|+.|+++.. .. ++..+..+++|++|+|++|. +. .+|..+ ..+++|++|+|+
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~-~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIF-TGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCC-TTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccc-cCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 3445667778888888732 21 33446677888888888764 33 334444 677888888888
Q ss_pred Ccccccc-----cchhhhhccccceeeccccccccc--ccCCCcCCCC---------CCCCccCceEecCCCcccccCCc
Q 001993 658 LCHYLKR-----LPERIGQLINLRHLMNSKEEWSRL--SYMPRGMERL---------TGLRTLGAFVASGGKSSKACSSL 721 (985)
Q Consensus 658 ~~~~l~~-----lP~~i~~L~~L~~L~l~~n~~~~l--~~~p~~i~~L---------~~L~~L~~~~~~~~~~~~~~~~l 721 (985)
+|. +.. +|..+..+++|++|++++|..... ..++..+..+ ++|++|++..+..... .+
T Consensus 103 ~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~-----~~ 176 (386)
T 2ca6_A 103 DNA-FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENG-----SM 176 (386)
T ss_dssp SCC-CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGG-----GH
T ss_pred CCc-CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcH-----HH
Confidence 877 443 677777788888888875443210 1122222222 4455554433222110 00
Q ss_pred hhhhccccCcceeeecccccccCCCCcchhhhcccccccccccEEEEEcCCCCcchhHhhhc-CCCCCCCCCeEEEeecc
Q 001993 722 KSLNKLKHLEGSLTLRGLGNERDLGDDNDDEKVDLKSKMKLVDLHLRFDSTTKTKDHRVVLE-CLQPPSSLEKLGIYGYA 800 (985)
Q Consensus 722 ~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~ 800 (985)
. .....+..+++|+.|++++|.... .....+.. .+..+++|+.|++++|.
T Consensus 177 ~----------------------------~l~~~l~~~~~L~~L~L~~n~l~~-~g~~~l~~~~l~~~~~L~~L~Ls~n~ 227 (386)
T 2ca6_A 177 K----------------------------EWAKTFQSHRLLHTVKMVQNGIRP-EGIEHLLLEGLAYCQELKVLDLQDNT 227 (386)
T ss_dssp H----------------------------HHHHHHHHCTTCCEEECCSSCCCH-HHHHHHHHTTGGGCTTCCEEECCSSC
T ss_pred H----------------------------HHHHHHHhCCCcCEEECcCCCCCH-hHHHHHHHHHhhcCCCccEEECcCCC
Confidence 0 011223445566677766554110 01111222 56677888888888877
Q ss_pred C-----CCCCCCChhhhccccccEEeEeccCCCCc----CC-CC--CCCCccceeeccCCC
Q 001993 801 G-----DTISPTSDWMLSLAKLRVLTLRFCNECEC----LP-PL--GKLPCLETLVLEGMS 849 (985)
Q Consensus 801 ~-----~~~~~~p~~~~~l~~L~~L~L~~~~~~~~----l~-~l--~~l~~L~~L~L~~~~ 849 (985)
. ..+ |.++..+++|+.|+|++|..... ++ .+ +.+++|+.|+|++|.
T Consensus 228 l~~~g~~~l---~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~ 285 (386)
T 2ca6_A 228 FTHLGSSAL---AIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE 285 (386)
T ss_dssp CHHHHHHHH---HHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred CCcHHHHHH---HHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc
Confidence 5 334 66777888888888888853322 22 23 458888888888865
No 98
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.34 E-value=2.8e-12 Score=136.62 Aligned_cols=99 Identities=32% Similarity=0.508 Sum_probs=50.2
Q ss_pred cCCcceeecCC--CCCCCCcccccCCCCCeEecCCCCCccccchhhcCCCCCcEeeccCcccccccchh-hhhcccccee
Q 001993 602 RLTCLRSIDGL--PVGQIPKGIKKLIHLRYLALGENPWIKELPEALCELCNLQTLDVSLCHYLKRLPER-IGQLINLRHL 678 (985)
Q Consensus 602 ~l~~Lr~L~l~--~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lP~~-i~~L~~L~~L 678 (985)
.++.|+.|+++ .+..++ .++.+++|++|++++|. +..+| .++.+++|++|++++|. +..+|.. +..+++|++|
T Consensus 39 ~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNK-LHDIS-ALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSC-CCCCG-GGTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEE
T ss_pred cccceeeeeeCCCCccccc-ccccCCCCcEEECCCCC-CCCch-hhcCCCCCCEEECCCCc-cCccChhHhcCCcCCCEE
Confidence 34444455444 233332 35555666666666665 55543 45566666666666655 4444433 4556666666
Q ss_pred ecccccccccccCCCc-CCCCCCCCccCce
Q 001993 679 MNSKEEWSRLSYMPRG-MERLTGLRTLGAF 707 (985)
Q Consensus 679 ~l~~n~~~~l~~~p~~-i~~L~~L~~L~~~ 707 (985)
++++|.. ..+|.. ++.+++|++|++.
T Consensus 115 ~L~~n~l---~~~~~~~~~~l~~L~~L~L~ 141 (272)
T 3rfs_A 115 VLVENQL---QSLPDGVFDKLTNLTYLNLA 141 (272)
T ss_dssp ECTTSCC---CCCCTTTTTTCTTCCEEECC
T ss_pred ECCCCcC---CccCHHHhccCCCCCEEECC
Confidence 6654332 333332 4555555555543
No 99
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.34 E-value=2.7e-12 Score=137.99 Aligned_cols=59 Identities=24% Similarity=0.193 Sum_probs=41.0
Q ss_pred CCCCCCCeEEEeeccCCCCCCCChhhhccccccEEeEeccCCCCcCCCCCCCCccceeeccCCC
Q 001993 786 QPPSSLEKLGIYGYAGDTISPTSDWMLSLAKLRVLTLRFCNECECLPPLGKLPCLETLVLEGMS 849 (985)
Q Consensus 786 ~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~ 849 (985)
..+++|+.|++++|....+ +. +..+++|+.|+|++| .++.++.+..+++|+.|++++++
T Consensus 153 ~~l~~L~~L~L~~N~l~~~---~~-l~~l~~L~~L~L~~N-~i~~l~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 153 SRLTKLDTLSLEDNQISDI---VP-LAGLTKLQNLYLSKN-HISDLRALAGLKNLDVLELFSQE 211 (291)
T ss_dssp GGCTTCSEEECCSSCCCCC---GG-GTTCTTCCEEECCSS-CCCBCGGGTTCTTCSEEEEEEEE
T ss_pred ccCCCCCEEEccCCccccc---hh-hcCCCccCEEECCCC-cCCCChhhccCCCCCEEECcCCc
Confidence 3456677777777766555 33 667778888888777 45566677778888888887754
No 100
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.34 E-value=4.8e-11 Score=134.23 Aligned_cols=298 Identities=14% Similarity=0.057 Sum_probs=178.8
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhh----cc--CCceEEE
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVR----NH--FNEKIWV 252 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~----~~--f~~~~wv 252 (985)
.++||+.+++++.+++.... . ....+.+.|+|++|+||||||+.+++...-. .. ....+|+
T Consensus 21 ~l~gr~~~~~~l~~~l~~~~----------~---~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i 87 (384)
T 2qby_B 21 EIPFREDILRDAAIAIRYFV----------K---NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYV 87 (384)
T ss_dssp SCTTCHHHHHHHHHHHHHHH----------T---TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEE
T ss_pred CCCChHHHHHHHHHHHHHHH----------c---CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEE
Confidence 79999999999998886421 0 2345689999999999999999999842111 11 2346788
Q ss_pred EeCCCC-CHHHHHHHHHHHhcCCCC--CCCCHHHHHHHHHHHhcCceEEEEecCCCCCCccc-HHHHHhhhcCCCCCcEE
Q 001993 253 CVSEPF-DDIRIAKAILESLKGSAT--NAVESETVLKQLRESIEGKKFFLVLDDVWTEEPQN-WEQLLGCLRCGSKESRI 328 (985)
Q Consensus 253 ~~s~~~-~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~-~~~l~~~l~~~~~gs~i 328 (985)
++.... +...++..++..+.+... .......+...+.+.+..++.+|||||++...... .+.+...+.....+..|
T Consensus 88 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~i 167 (384)
T 2qby_B 88 NCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISV 167 (384)
T ss_dssp EHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEE
T ss_pred ECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEE
Confidence 877766 888899999998854322 22334666777778887766699999995422111 12202222222267789
Q ss_pred EEEcCchhh----HHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcC---CChh-HHHH
Q 001993 329 LVTTRNEKV----AIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCK---GLPL-AVKT 400 (985)
Q Consensus 329 ivTtR~~~v----~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~---GlPL-ai~~ 400 (985)
|+||+.... .......-...+.+.+++.++..++|...+..........+ +....|++.++ |.|. |+..
T Consensus 168 I~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~G~~r~a~~~ 244 (384)
T 2qby_B 168 IMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDD---EILSYIAAISAKEHGDARKAVNL 244 (384)
T ss_dssp EEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCS---HHHHHHHHHHHTTCCCHHHHHHH
T ss_pred EEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCH---HHHHHHHHHHHhccCCHHHHHHH
Confidence 999987532 11111110137899999999999999987531100001122 34566777777 8887 4333
Q ss_pred HHhhh--hc---CCChHHHHHHHHhhhhhhhccccccchhhhcccCCCCcchhHHHhhhccCCCCcccChhHHHHHHhhc
Q 001993 401 LGSLL--RF---KGKIEEWQRVLENELWELEELDEGLLGPLLLSYLDLPPPLKKCFSYCAIFPKDSRLEKDKLIRLWMAQ 475 (985)
Q Consensus 401 ~~~~L--~~---~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl~~a~fp~~~~i~~~~Li~~Wiae 475 (985)
+-... .. .-+.+.+..++.... ...+.-++..|+++.+..+..++....+..+. +... -+++
T Consensus 245 l~~a~~~a~~~~~i~~~~v~~~~~~~~----------~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~-~~~~--~~~~ 311 (384)
T 2qby_B 245 LFRAAQLASGGGIIRKEHVDKAIVDYE----------QERLIEAVKALPFHYKLALRSLIESEDVMSAH-KMYT--DLCN 311 (384)
T ss_dssp HHHHHHHTTSSSCCCHHHHHHHHHHHH----------HHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHH-HHHH--HHHH
T ss_pred HHHHHHHhcCCCccCHHHHHHHHHHHh----------cchHHHHHHcCCHHHHHHHHHHHHhcccChHH-HHHH--HHHH
Confidence 33222 21 125667766665421 12345566788888887777676611101111 0111 1222
Q ss_pred CcccccCccchhhHhHHHHHHHhhcccccccc
Q 001993 476 DYLKVKGREDMVVGEGYFENLAMRSLFQDFER 507 (985)
Q Consensus 476 g~i~~~~~~~~~~~~~~~~~L~~~~ll~~~~~ 507 (985)
.+ . ....+......+++.|...+++.....
T Consensus 312 ~~-g-~~~~~~~~~~~~l~~L~~~gli~~~~~ 341 (384)
T 2qby_B 312 KF-K-QKPLSYRRFSDIISELDMFGIVKIRII 341 (384)
T ss_dssp HT-T-CCCCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred Hc-C-CCCCCHHHHHHHHHHHHhCCCEEEEec
Confidence 11 0 011222556788999999999987543
No 101
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.33 E-value=2.5e-13 Score=150.00 Aligned_cols=220 Identities=16% Similarity=0.131 Sum_probs=140.3
Q ss_pred eEEEEEEcCCCCCccCCCccccCC--CCceEEEccCcCCcchhhhHHHhhccCCcceeecCCCC--C--CCCcccccCCC
Q 001993 553 ARHLMITGETRSEMVPFPSMVYDE--TKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGLPV--G--QIPKGIKKLIH 626 (985)
Q Consensus 553 ~r~l~l~~~~~~~~~~~~~~~~~~--~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~--~--~lp~~i~~l~~ 626 (985)
.+++.+.++... +..+..+ ++++.|.+.++... ...+. +.++++|+.|+++.. . .+|..+..+++
T Consensus 49 ~~~l~l~~~~~~-----~~~~~~~~~~~l~~L~l~~n~l~---~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~ 119 (336)
T 2ast_B 49 WQTLDLTGKNLH-----PDVTGRLLSQGVIAFRCPRSFMD---QPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSK 119 (336)
T ss_dssp SSEEECTTCBCC-----HHHHHHHHHTTCSEEECTTCEEC---SCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCC
T ss_pred heeeccccccCC-----HHHHHhhhhccceEEEcCCcccc---ccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCC
Confidence 456766665542 3334445 78999999987532 22222 457899999999943 2 26777899999
Q ss_pred CCeEecCCCCCccccchhhcCCCCCcEeeccCccccc--ccchhhhhccccceeeccccccccccc--CCCcCCCCC-CC
Q 001993 627 LRYLALGENPWIKELPEALCELCNLQTLDVSLCHYLK--RLPERIGQLINLRHLMNSKEEWSRLSY--MPRGMERLT-GL 701 (985)
Q Consensus 627 Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~--~lP~~i~~L~~L~~L~l~~n~~~~l~~--~p~~i~~L~-~L 701 (985)
|++|++++|......|..++.+++|++|++++|..+. .+|..+..+++|++|++++| ..+.. +|..++.++ +|
T Consensus 120 L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~--~~l~~~~~~~~~~~l~~~L 197 (336)
T 2ast_B 120 LQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC--FDFTEKHVQVAVAHVSETI 197 (336)
T ss_dssp CSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCC--TTCCHHHHHHHHHHSCTTC
T ss_pred CCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCC--CCcChHHHHHHHHhcccCC
Confidence 9999999998333688889999999999999995466 47777899999999999943 22221 233334444 44
Q ss_pred CccCceEecCCCcccccCCchhhhccccCcceeeecccccccCCCCcchhhhcccccccccccEEEEEcCCCCcchhHhh
Q 001993 702 RTLGAFVASGGKSSKACSSLKSLNKLKHLEGSLTLRGLGNERDLGDDNDDEKVDLKSKMKLVDLHLRFDSTTKTKDHRVV 781 (985)
Q Consensus 702 ~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 781 (985)
++|++..+.. .+. ...+
T Consensus 198 ~~L~l~~~~~-----------------------------~~~----------------------------------~~~l 214 (336)
T 2ast_B 198 TQLNLSGYRK-----------------------------NLQ----------------------------------KSDL 214 (336)
T ss_dssp CEEECCSCGG-----------------------------GSC----------------------------------HHHH
T ss_pred CEEEeCCCcc-----------------------------cCC----------------------------------HHHH
Confidence 4444321100 000 0111
Q ss_pred hcCCCCCCCCCeEEEeeccC-CCCCCCChhhhccccccEEeEeccCCCC--cCCCCCCCCccceeeccCC
Q 001993 782 LECLQPPSSLEKLGIYGYAG-DTISPTSDWMLSLAKLRVLTLRFCNECE--CLPPLGKLPCLETLVLEGM 848 (985)
Q Consensus 782 ~~~l~~~~~L~~L~l~~~~~-~~~~~~p~~~~~l~~L~~L~L~~~~~~~--~l~~l~~l~~L~~L~L~~~ 848 (985)
...+..+++|+.|++++|.. .... +..+..+++|+.|+|++|.... .+..++++++|+.|+|++|
T Consensus 215 ~~~~~~~~~L~~L~l~~~~~l~~~~--~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 215 STLVRRCPNLVHLDLSDSVMLKNDC--FQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp HHHHHHCTTCSEEECTTCTTCCGGG--GGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred HHHHhhCCCCCEEeCCCCCcCCHHH--HHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 11122345677777777652 2111 4566677888888888875332 1224667888888888876
No 102
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.33 E-value=1.5e-12 Score=135.96 Aligned_cols=58 Identities=16% Similarity=0.165 Sum_probs=40.5
Q ss_pred CCCCeEEEeecc-CCCCCCCChhhhcc-ccccEEeEeccCCCCcCCCCCCCCccceeeccCCCC
Q 001993 789 SSLEKLGIYGYA-GDTISPTSDWMLSL-AKLRVLTLRFCNECECLPPLGKLPCLETLVLEGMSS 850 (985)
Q Consensus 789 ~~L~~L~l~~~~-~~~~~~~p~~~~~l-~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~ 850 (985)
.+|+.|++++|. ...+. +..+..+ ++|+.|+|++|. ++.+|.. .+++|+.|++.++..
T Consensus 179 ~~L~~L~L~~n~~l~~i~--~~~~~~l~~~L~~L~l~~N~-l~~l~~~-~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 179 TKLDAVYLNKNKYLTVID--KDAFGGVYSGPSLLDVSQTS-VTALPSK-GLEHLKELIARNTWT 238 (239)
T ss_dssp CEEEEEECTTCTTCCEEC--TTTTTTCSBCCSEEECTTCC-CCCCCCT-TCTTCSEEECTTC--
T ss_pred CCCCEEEcCCCCCcccCC--HHHhhccccCCcEEECCCCc-cccCChh-HhccCceeeccCccC
Confidence 467777777774 55552 4556677 899999998884 4566654 688899999887653
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.30 E-value=5.1e-12 Score=149.21 Aligned_cols=79 Identities=18% Similarity=0.213 Sum_probs=43.4
Q ss_pred cccCCCCCeEecCCCCCccccchhhcCCCCCcEeeccCcccccccchhhhhccccceeecccccccccccCCCcCCCCCC
Q 001993 621 IKKLIHLRYLALGENPWIKELPEALCELCNLQTLDVSLCHYLKRLPERIGQLINLRHLMNSKEEWSRLSYMPRGMERLTG 700 (985)
Q Consensus 621 i~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~n~~~~l~~~p~~i~~L~~ 700 (985)
+..|.+|++|++++|. +..+| .+..|++|+.|+|++|. +..+|. +..|++|++|+|++|.. ..+| .++.+++
T Consensus 39 ~~~L~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~l---~~l~-~l~~l~~ 110 (605)
T 1m9s_A 39 QNELNSIDQIIANNSD-IKSVQ-GIQYLPNVTKLFLNGNK-LTDIKP-LTNLKNLGWLFLDENKI---KDLS-SLKDLKK 110 (605)
T ss_dssp HHHHTTCCCCBCTTCC-CCCCT-TGGGCTTCCEEECTTSC-CCCCGG-GGGCTTCCEEECCSSCC---CCCT-TSTTCTT
T ss_pred hhcCCCCCEEECcCCC-CCCCh-HHccCCCCCEEEeeCCC-CCCChh-hccCCCCCEEECcCCCC---CCCh-hhccCCC
Confidence 3455566666666665 55555 35566666666666655 555554 55666666666664332 2232 4555555
Q ss_pred CCccCce
Q 001993 701 LRTLGAF 707 (985)
Q Consensus 701 L~~L~~~ 707 (985)
|+.|++.
T Consensus 111 L~~L~Ls 117 (605)
T 1m9s_A 111 LKSLSLE 117 (605)
T ss_dssp CCEEECT
T ss_pred CCEEEec
Confidence 5555554
No 104
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.29 E-value=2.4e-13 Score=153.17 Aligned_cols=245 Identities=18% Similarity=0.163 Sum_probs=154.6
Q ss_pred CCccccCCCCceEEEccCcCCcch-hhhHHHhhccCCcceeecCCCC--C----CCCccc-------ccCCCCCeEecCC
Q 001993 569 FPSMVYDETKLRSLVLDQRLSFKP-RIALSKLFDRLTCLRSIDGLPV--G----QIPKGI-------KKLIHLRYLALGE 634 (985)
Q Consensus 569 ~~~~~~~~~~Lr~L~l~~~~~~~~-~~~~~~~~~~l~~Lr~L~l~~~--~----~lp~~i-------~~l~~Lr~L~L~~ 634 (985)
+...+..+++|++|.++++..... ...+...+.++++|++|+++.+ . .+|..+ ..+++|++|+|++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 455666788999999999854211 1224455788999999999832 3 234444 7889999999999
Q ss_pred CCCccc-----cchhhcCCCCCcEeeccCccccc-----ccchhhhhc---------cccceeecccccccccccCC---
Q 001993 635 NPWIKE-----LPEALCELCNLQTLDVSLCHYLK-----RLPERIGQL---------INLRHLMNSKEEWSRLSYMP--- 692 (985)
Q Consensus 635 ~~~i~~-----lP~~i~~L~~L~~L~l~~~~~l~-----~lP~~i~~L---------~~L~~L~l~~n~~~~l~~~p--- 692 (985)
|. +.. +|..+..+++|++|+|++|. +. .++..+..+ ++|++|++++|.... ..+|
T Consensus 104 n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~l~ 180 (386)
T 2ca6_A 104 NA-FGPTAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN-GSMKEWA 180 (386)
T ss_dssp CC-CCTTTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG-GGHHHHH
T ss_pred Cc-CCHHHHHHHHHHHHhCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc-HHHHHHH
Confidence 98 665 88899999999999999998 43 233444555 899999999765431 2233
Q ss_pred CcCCCCCCCCccCceEecCCCcccccCCchhhhccccCcceeeecccccccCCCCcchhhhcccccccccccEEEEEcCC
Q 001993 693 RGMERLTGLRTLGAFVASGGKSSKACSSLKSLNKLKHLEGSLTLRGLGNERDLGDDNDDEKVDLKSKMKLVDLHLRFDST 772 (985)
Q Consensus 693 ~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 772 (985)
..+..+++|++|++..+..... .+.. .....+..+++|+.|+|++|..
T Consensus 181 ~~l~~~~~L~~L~L~~n~l~~~--------g~~~------------------------l~~~~l~~~~~L~~L~Ls~n~l 228 (386)
T 2ca6_A 181 KTFQSHRLLHTVKMVQNGIRPE--------GIEH------------------------LLLEGLAYCQELKVLDLQDNTF 228 (386)
T ss_dssp HHHHHCTTCCEEECCSSCCCHH--------HHHH------------------------HHHTTGGGCTTCCEEECCSSCC
T ss_pred HHHHhCCCcCEEECcCCCCCHh--------HHHH------------------------HHHHHhhcCCCccEEECcCCCC
Confidence 3456677777777654322210 0000 0001233445666666665540
Q ss_pred CCcchhHhhhcCCCCCCCCCeEEEeeccCCCCC--CCChhhhc--cccccEEeEeccCCCC----cCCC-C-CCCCccce
Q 001993 773 TKTKDHRVVLECLQPPSSLEKLGIYGYAGDTIS--PTSDWMLS--LAKLRVLTLRFCNECE----CLPP-L-GKLPCLET 842 (985)
Q Consensus 773 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~~p~~~~~--l~~L~~L~L~~~~~~~----~l~~-l-~~l~~L~~ 842 (985)
. ......++..+..+++|+.|++++|...... .+|.++.. +++|+.|+|++|.... .+|. + .++++|++
T Consensus 229 ~-~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~ 307 (386)
T 2ca6_A 229 T-HLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLF 307 (386)
T ss_dssp H-HHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCE
T ss_pred C-cHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceE
Confidence 0 0001334455666778888888887654321 01344433 7888888888885433 2543 3 45788888
Q ss_pred eeccCCC
Q 001993 843 LVLEGMS 849 (985)
Q Consensus 843 L~L~~~~ 849 (985)
|+|++|+
T Consensus 308 L~l~~N~ 314 (386)
T 2ca6_A 308 LELNGNR 314 (386)
T ss_dssp EECTTSB
T ss_pred EEccCCc
Confidence 8888865
No 105
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.27 E-value=6.6e-11 Score=123.85 Aligned_cols=197 Identities=15% Similarity=0.196 Sum_probs=121.1
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
+++||+..++.+..++..+. ....+.|+|++|+||||+|+.+++. ....+.... ..+.
T Consensus 24 ~~~g~~~~~~~l~~~l~~~~----------------~~~~~ll~G~~G~GKT~l~~~~~~~--~~~~~~~~~-~~~~--- 81 (250)
T 1njg_A 24 DVVGQEHVLTALANGLSLGR----------------IHHAYLFSGTRGVGKTSIARLLAKG--LNCETGITA-TPCG--- 81 (250)
T ss_dssp GCCSCHHHHHHHHHHHHHTC----------------CCSEEEEECSTTSCHHHHHHHHHHH--HHCTTCSCS-SCCS---
T ss_pred HHhCcHHHHHHHHHHHHcCC----------------CCeEEEEECCCCCCHHHHHHHHHHH--hcCCCCCCC-CCCc---
Confidence 69999999999999997443 2358899999999999999999873 222111100 0000
Q ss_pred CHHHHHHHHHHHhc-----CCCCCCCCHHHHHHHHHHHh-----cCceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEE
Q 001993 259 DDIRIAKAILESLK-----GSATNAVESETVLKQLRESI-----EGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRI 328 (985)
Q Consensus 259 ~~~~~~~~i~~~l~-----~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 328 (985)
.... ...+..... .........+.+ ..+.+.+ .+++.+||+||++..+...++.+...+.....+..+
T Consensus 82 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~ 159 (250)
T 1njg_A 82 VCDN-CREIEQGRFVDLIEIDAASRTKVEDT-RDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKF 159 (250)
T ss_dssp CSHH-HHHHHTTCCSSEEEEETTCGGGHHHH-HHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEE
T ss_pred ccHH-HHHHhccCCcceEEecCcccccHHHH-HHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEE
Confidence 0000 000000000 000000111111 1122221 356899999999776666778888887766677889
Q ss_pred EEEcCchhh-HHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHHHHHhhh
Q 001993 329 LVTTRNEKV-AIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVKTLGSLL 405 (985)
Q Consensus 329 ivTtR~~~v-~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~L 405 (985)
|+||+.... ...+.. ....+++.+++.++..+++...+...... .. .+....|++.|+|.|..+..+...+
T Consensus 160 i~~t~~~~~~~~~l~~-r~~~i~l~~l~~~e~~~~l~~~~~~~~~~--~~---~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 160 LLATTDPQKLPVTILS-RCLQFHLKALDVEQIRHQLEHILNEEHIA--HE---PRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp EEEESCGGGSCHHHHT-TSEEEECCCCCHHHHHHHHHHHHHHTTCC--BC---HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred EEEeCChHhCCHHHHH-HhhhccCCCCCHHHHHHHHHHHHHhcCCC--CC---HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 998876542 111111 12578999999999999999877543221 11 2457789999999999988776544
No 106
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.26 E-value=1.1e-10 Score=131.37 Aligned_cols=298 Identities=15% Similarity=0.111 Sum_probs=174.7
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccC---CceEEEEeC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHF---NEKIWVCVS 255 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f---~~~~wv~~s 255 (985)
.|+||+.+++++.+++.... . ......+.|+|++|+||||||+.+++ .....+ ...+|+++.
T Consensus 21 ~~~gr~~e~~~l~~~l~~~~----------~---~~~~~~vli~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~~~i~~~ 85 (386)
T 2qby_A 21 ELPHREDQIRKIASILAPLY----------R---EEKPNNIFIYGLTGTGKTAVVKFVLS--KLHKKFLGKFKHVYINTR 85 (386)
T ss_dssp CCTTCHHHHHHHHHSSGGGG----------G---TCCCCCEEEEECTTSSHHHHHHHHHH--HHHHHTCSSCEEEEEEHH
T ss_pred CCCChHHHHHHHHHHHHHHH----------c---CCCCCeEEEECCCCCCHHHHHHHHHH--HHHHHhcCCceEEEEECC
Confidence 79999999999999887431 0 13456899999999999999999998 343333 246788877
Q ss_pred CCCCHHHHHHHHHHHhcCCCC-CCCCHHHHHHHHHHHhc--CceEEEEecCCCCCC----cccHHHHHhhhcC-CCCCcE
Q 001993 256 EPFDDIRIAKAILESLKGSAT-NAVESETVLKQLRESIE--GKKFFLVLDDVWTEE----PQNWEQLLGCLRC-GSKESR 327 (985)
Q Consensus 256 ~~~~~~~~~~~i~~~l~~~~~-~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~----~~~~~~l~~~l~~-~~~gs~ 327 (985)
...+...++..++..++.... ...+..+....+.+.+. +++.+||||+++... ...+..+...+.. ...+..
T Consensus 86 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~ 165 (386)
T 2qby_A 86 QIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKIS 165 (386)
T ss_dssp HHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EE
T ss_pred CCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEE
Confidence 767778888888887754322 22335555666666664 458999999995421 2334445444432 234557
Q ss_pred EEEEcCchhhHHhhcC-----cccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcC---CChhHHH
Q 001993 328 ILVTTRNEKVAIAIGT-----TKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCK---GLPLAVK 399 (985)
Q Consensus 328 iivTtR~~~v~~~~~~-----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~---GlPLai~ 399 (985)
+|+||+.......+.. .....+.+.+++.++..+++.+.+.......... .++...+++.++ |.|..+.
T Consensus 166 ~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~ 242 (386)
T 2qby_A 166 FIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLP---DNVIKLCAALAAREHGDARRAL 242 (386)
T ss_dssp EEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSC---HHHHHHHHHHHHHTTCCHHHHH
T ss_pred EEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhcCCHHHHH
Confidence 7888886643322211 1114789999999999999988643111000112 244566777776 9998443
Q ss_pred HHHh-hh--h---c--CCChHHHHHHHHhhhhhhhccccccchhhhcccCCCCcchhHHHhhhccCCC-C-cccChhHHH
Q 001993 400 TLGS-LL--R---F--KGKIEEWQRVLENELWELEELDEGLLGPLLLSYLDLPPPLKKCFSYCAIFPK-D-SRLEKDKLI 469 (985)
Q Consensus 400 ~~~~-~L--~---~--~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl~~a~fp~-~-~~i~~~~Li 469 (985)
.+.. .. . . .-+.+.+..++.... ...+.-++..+|...+..+..++.+.+ + ..+....+.
T Consensus 243 ~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~----------~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~ 312 (386)
T 2qby_A 243 DLLRVSGEIAERMKDTKVKEEYVYMAKEEIE----------RDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVY 312 (386)
T ss_dssp HHHHHHHHHHHHTTCSSCCHHHHHHHHHHHH----------HHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHH
T ss_pred HHHHHHHHHHHhcCCCccCHHHHHHHHHHHh----------hchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHH
Confidence 3322 22 1 1 114555555544321 123444566788877777766664322 1 123333332
Q ss_pred HHH--hhcCcccccCccchhhHhHHHHHHHhhccccccc
Q 001993 470 RLW--MAQDYLKVKGREDMVVGEGYFENLAMRSLFQDFE 506 (985)
Q Consensus 470 ~~W--iaeg~i~~~~~~~~~~~~~~~~~L~~~~ll~~~~ 506 (985)
+.. +++.. . ...........+++.|...+++....
T Consensus 313 ~~~~~~~~~~-g-~~~~~~~~~~~~l~~L~~~gli~~~~ 349 (386)
T 2qby_A 313 ETYLNICKKL-G-VEAVTQRRVSDIINELDMVGILTAKV 349 (386)
T ss_dssp HHHHHHHHHH-T-CCCCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHhc-C-CCCCCHHHHHHHHHHHHhCCCEEEEe
Confidence 221 11110 0 01111244567899999999997643
No 107
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.24 E-value=1.8e-11 Score=133.22 Aligned_cols=81 Identities=12% Similarity=0.063 Sum_probs=50.3
Q ss_pred CCCCCeEecCCCCCccccchhh--cCCCCCcEeeccCcccccccc----hhhhhccccceeecccccccccccCC-CcCC
Q 001993 624 LIHLRYLALGENPWIKELPEAL--CELCNLQTLDVSLCHYLKRLP----ERIGQLINLRHLMNSKEEWSRLSYMP-RGME 696 (985)
Q Consensus 624 l~~Lr~L~L~~~~~i~~lP~~i--~~L~~L~~L~l~~~~~l~~lP----~~i~~L~~L~~L~l~~n~~~~l~~~p-~~i~ 696 (985)
+.+|++|++++|......|..+ ..+++|++|++++|......| ..+..+++|++|++++|.. ..+| ..++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l---~~~~~~~~~ 166 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHS---PAFSCEQVR 166 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSS---CCCCTTSCC
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCc---chhhHHHhc
Confidence 4568888888877334566666 777888888888877333333 2345677788888775443 3333 4456
Q ss_pred CCCCCCccCce
Q 001993 697 RLTGLRTLGAF 707 (985)
Q Consensus 697 ~L~~L~~L~~~ 707 (985)
.+++|++|++.
T Consensus 167 ~l~~L~~L~Ls 177 (310)
T 4glp_A 167 AFPALTSLDLS 177 (310)
T ss_dssp CCTTCCEEECC
T ss_pred cCCCCCEEECC
Confidence 66666666553
No 108
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.24 E-value=2e-11 Score=131.18 Aligned_cols=170 Identities=21% Similarity=0.230 Sum_probs=121.0
Q ss_pred cccCCCCCeEecCCCCCccccchhhcCCCCCcEeeccCcccccccchhhhhccccceeecccccccccccCCCcCCCCCC
Q 001993 621 IKKLIHLRYLALGENPWIKELPEALCELCNLQTLDVSLCHYLKRLPERIGQLINLRHLMNSKEEWSRLSYMPRGMERLTG 700 (985)
Q Consensus 621 i~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~n~~~~l~~~p~~i~~L~~ 700 (985)
+..+.+|++|++++|. +..+|. +..+++|++|++++|. +..+|. +..+++|++|++++|.. ..+| .++.+++
T Consensus 42 ~~~l~~L~~L~l~~~~-i~~~~~-~~~l~~L~~L~L~~n~-l~~~~~-l~~l~~L~~L~l~~n~l---~~~~-~l~~l~~ 113 (291)
T 1h6t_A 42 QNELNSIDQIIANNSD-IKSVQG-IQYLPNVTKLFLNGNK-LTDIKP-LANLKNLGWLFLDENKV---KDLS-SLKDLKK 113 (291)
T ss_dssp HHHHHTCCEEECTTSC-CCCCTT-GGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCC---CCGG-GGTTCTT
T ss_pred hhhcCcccEEEccCCC-cccChh-HhcCCCCCEEEccCCc-cCCCcc-cccCCCCCEEECCCCcC---CCCh-hhccCCC
Confidence 4678889999999888 888865 8889999999999887 777776 88899999999985543 3333 3556666
Q ss_pred CCccCceEecCCCcccccCCchhhhccccCcceeeecccccccCCCCcchhhhcccccccccccEEEEEcCCCCcchhHh
Q 001993 701 LRTLGAFVASGGKSSKACSSLKSLNKLKHLEGSLTLRGLGNERDLGDDNDDEKVDLKSKMKLVDLHLRFDSTTKTKDHRV 780 (985)
Q Consensus 701 L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 780 (985)
|++|++..+. +..+
T Consensus 114 L~~L~L~~n~----------i~~~-------------------------------------------------------- 127 (291)
T 1h6t_A 114 LKSLSLEHNG----------ISDI-------------------------------------------------------- 127 (291)
T ss_dssp CCEEECTTSC----------CCCC--------------------------------------------------------
T ss_pred CCEEECCCCc----------CCCC--------------------------------------------------------
Confidence 6665543111 1110
Q ss_pred hhcCCCCCCCCCeEEEeeccCCCCCCCChhhhccccccEEeEeccCCCCcCCCCCCCCccceeeccCCCCceEeCCcccC
Q 001993 781 VLECLQPPSSLEKLGIYGYAGDTISPTSDWMLSLAKLRVLTLRFCNECECLPPLGKLPCLETLVLEGMSSVKRLGNGFLG 860 (985)
Q Consensus 781 ~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~l~~~~~~ 860 (985)
..+..+++|+.|++++|....+ ..+..+++|+.|+|++| .+..++++..+++|+.|+|++|. +..++.
T Consensus 128 --~~l~~l~~L~~L~l~~n~l~~~----~~l~~l~~L~~L~L~~N-~l~~~~~l~~l~~L~~L~L~~N~-i~~l~~---- 195 (291)
T 1h6t_A 128 --NGLVHLPQLESLYLGNNKITDI----TVLSRLTKLDTLSLEDN-QISDIVPLAGLTKLQNLYLSKNH-ISDLRA---- 195 (291)
T ss_dssp --GGGGGCTTCCEEECCSSCCCCC----GGGGGCTTCSEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCBCGG----
T ss_pred --hhhcCCCCCCEEEccCCcCCcc----hhhccCCCCCEEEccCC-ccccchhhcCCCccCEEECCCCc-CCCChh----
Confidence 0112245677777777765554 46778999999999999 45566669999999999999975 554432
Q ss_pred CchhhhhhhhhhhcccccccCCCCCccceeeccccc
Q 001993 861 IAEDHQARADQAETASSIIRDTAFPRLETLEFLDME 896 (985)
Q Consensus 861 ~~~~~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~ 896 (985)
...+++|+.|++++++
T Consensus 196 --------------------l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 196 --------------------LAGLKNLDVLELFSQE 211 (291)
T ss_dssp --------------------GTTCTTCSEEEEEEEE
T ss_pred --------------------hccCCCCCEEECcCCc
Confidence 1357899999998853
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.24 E-value=3.2e-11 Score=142.39 Aligned_cols=168 Identities=23% Similarity=0.237 Sum_probs=128.3
Q ss_pred hccCCcceeecCC--CCCCCCcccccCCCCCeEecCCCCCccccchhhcCCCCCcEeeccCcccccccchhhhhccccce
Q 001993 600 FDRLTCLRSIDGL--PVGQIPKGIKKLIHLRYLALGENPWIKELPEALCELCNLQTLDVSLCHYLKRLPERIGQLINLRH 677 (985)
Q Consensus 600 ~~~l~~Lr~L~l~--~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~ 677 (985)
+..+..|+.|+++ .+..+| .+..|++|++|+|++|. +..+|. ++.|++|+.|+|++|. +..+| .+..|++|++
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~ 113 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNK-LTDIKP-LTNLKNLGWLFLDENK-IKDLS-SLKDLKKLKS 113 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSC-CCCCGG-GGGCTTCCEEECCSSC-CCCCT-TSTTCTTCCE
T ss_pred hhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCC-CCCChh-hccCCCCCEEECcCCC-CCCCh-hhccCCCCCE
Confidence 4567889999998 566676 68999999999999998 888887 9999999999999998 87777 6999999999
Q ss_pred eecccccccccccCCCcCCCCCCCCccCceEecCCCcccccCCchhhhccccCcceeeecccccccCCCCcchhhhcccc
Q 001993 678 LMNSKEEWSRLSYMPRGMERLTGLRTLGAFVASGGKSSKACSSLKSLNKLKHLEGSLTLRGLGNERDLGDDNDDEKVDLK 757 (985)
Q Consensus 678 L~l~~n~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~~~~l~ 757 (985)
|++++|... .+ ..+..+++|+.|++..+. +..+
T Consensus 114 L~Ls~N~l~---~l-~~l~~l~~L~~L~Ls~N~----------l~~l--------------------------------- 146 (605)
T 1m9s_A 114 LSLEHNGIS---DI-NGLVHLPQLESLYLGNNK----------ITDI--------------------------------- 146 (605)
T ss_dssp EECTTSCCC---CC-GGGGGCTTCSEEECCSSC----------CCCC---------------------------------
T ss_pred EEecCCCCC---CC-ccccCCCccCEEECCCCc----------cCCc---------------------------------
Confidence 999965442 22 234555555555442110 0000
Q ss_pred cccccccEEEEEcCCCCcchhHhhhcCCCCCCCCCeEEEeeccCCCCCCCChhhhccccccEEeEeccCCCCcCCCCCCC
Q 001993 758 SKMKLVDLHLRFDSTTKTKDHRVVLECLQPPSSLEKLGIYGYAGDTISPTSDWMLSLAKLRVLTLRFCNECECLPPLGKL 837 (985)
Q Consensus 758 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l 837 (985)
..+..+++|+.|+|++|....+ +. +..+++|+.|+|++| .+..+|.+..|
T Consensus 147 -------------------------~~l~~l~~L~~L~Ls~N~l~~~---~~-l~~l~~L~~L~Ls~N-~i~~l~~l~~l 196 (605)
T 1m9s_A 147 -------------------------TVLSRLTKLDTLSLEDNQISDI---VP-LAGLTKLQNLYLSKN-HISDLRALAGL 196 (605)
T ss_dssp -------------------------GGGGSCTTCSEEECCSSCCCCC---GG-GTTCTTCCEEECCSS-CCCBCGGGTTC
T ss_pred -------------------------hhhcccCCCCEEECcCCcCCCc---hh-hccCCCCCEEECcCC-CCCCChHHccC
Confidence 1123356788888888877666 44 788999999999999 55677889999
Q ss_pred CccceeeccCCC
Q 001993 838 PCLETLVLEGMS 849 (985)
Q Consensus 838 ~~L~~L~L~~~~ 849 (985)
++|+.|+|++|+
T Consensus 197 ~~L~~L~L~~N~ 208 (605)
T 1m9s_A 197 KNLDVLELFSQE 208 (605)
T ss_dssp TTCSEEECCSEE
T ss_pred CCCCEEEccCCc
Confidence 999999999876
No 110
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.21 E-value=1.5e-11 Score=130.06 Aligned_cols=165 Identities=19% Similarity=0.122 Sum_probs=114.2
Q ss_pred cCCcceeecCC--CCCCCCcccccCCCCCeEecCCCCCccccchhhcCCCCCcEeeccCcccccccchhhhhccccceee
Q 001993 602 RLTCLRSIDGL--PVGQIPKGIKKLIHLRYLALGENPWIKELPEALCELCNLQTLDVSLCHYLKRLPERIGQLINLRHLM 679 (985)
Q Consensus 602 ~l~~Lr~L~l~--~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~ 679 (985)
.+..+..++++ .+..++ .+..+.+|++|++++|. +..+| .+..+++|++|++++|. +..+|. +..+++|++|+
T Consensus 17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~~L~~L~ 91 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSN-IQSLA-GMQFFTNLKELHLSHNQ-ISDLSP-LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSC-CCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCSSCCEEE
T ss_pred HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCC-cccch-HHhhCCCCCEEECCCCc-cCCChh-hccCCCCCEEE
Confidence 34455556665 555666 57888999999999997 88888 68889999999999887 778877 88899999999
Q ss_pred cccccccccccCCCcCCCCCCCCccCceEecCCCcccccCCchhhhccccCcceeeecccccccCCCCcchhhhcccccc
Q 001993 680 NSKEEWSRLSYMPRGMERLTGLRTLGAFVASGGKSSKACSSLKSLNKLKHLEGSLTLRGLGNERDLGDDNDDEKVDLKSK 759 (985)
Q Consensus 680 l~~n~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~~~~l~~~ 759 (985)
+++|.. ..+|.... ++|+.|++..+... .+
T Consensus 92 L~~N~l---~~l~~~~~--~~L~~L~L~~N~l~----------~~----------------------------------- 121 (263)
T 1xeu_A 92 VNRNRL---KNLNGIPS--ACLSRLFLDNNELR----------DT----------------------------------- 121 (263)
T ss_dssp CCSSCC---SCCTTCCC--SSCCEEECCSSCCS----------BS-----------------------------------
T ss_pred CCCCcc---CCcCcccc--CcccEEEccCCccC----------CC-----------------------------------
Confidence 986543 33332211 44554444211100 00
Q ss_pred cccccEEEEEcCCCCcchhHhhhcCCCCCCCCCeEEEeeccCCCCCCCChhhhccccccEEeEeccCCCCcCCCCCCCCc
Q 001993 760 MKLVDLHLRFDSTTKTKDHRVVLECLQPPSSLEKLGIYGYAGDTISPTSDWMLSLAKLRVLTLRFCNECECLPPLGKLPC 839 (985)
Q Consensus 760 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~ 839 (985)
..+..+++|+.|++++|....+ | .+..+++|+.|+|++|. +..++.+..+++
T Consensus 122 -----------------------~~l~~l~~L~~L~Ls~N~i~~~---~-~l~~l~~L~~L~L~~N~-i~~~~~l~~l~~ 173 (263)
T 1xeu_A 122 -----------------------DSLIHLKNLEILSIRNNKLKSI---V-MLGFLSKLEVLDLHGNE-ITNTGGLTRLKK 173 (263)
T ss_dssp -----------------------GGGTTCTTCCEEECTTSCCCBC---G-GGGGCTTCCEEECTTSC-CCBCTTSTTCCC
T ss_pred -----------------------hhhcCcccccEEECCCCcCCCC---h-HHccCCCCCEEECCCCc-CcchHHhccCCC
Confidence 1123346777778777776665 4 56778889999998884 455577888899
Q ss_pred cceeeccCCC
Q 001993 840 LETLVLEGMS 849 (985)
Q Consensus 840 L~~L~L~~~~ 849 (985)
|+.|++++++
T Consensus 174 L~~L~l~~N~ 183 (263)
T 1xeu_A 174 VNWIDLTGQK 183 (263)
T ss_dssp CCEEEEEEEE
T ss_pred CCEEeCCCCc
Confidence 9999998864
No 111
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.21 E-value=2.1e-11 Score=122.78 Aligned_cols=152 Identities=17% Similarity=0.198 Sum_probs=106.9
Q ss_pred cccCCCCCeEecCCCCCccccchhhcCCCCCcEeeccCcccccccchhhhhccccceeecccccccccccCCCcCCCCCC
Q 001993 621 IKKLIHLRYLALGENPWIKELPEALCELCNLQTLDVSLCHYLKRLPERIGQLINLRHLMNSKEEWSRLSYMPRGMERLTG 700 (985)
Q Consensus 621 i~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~n~~~~l~~~p~~i~~L~~ 700 (985)
...+.+|++|++++|. +..+| .+..+++|++|++++|. +..+| .+..+++|++|++++|... ...|..++.+++
T Consensus 40 ~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~l~~n~-~~~~~-~l~~l~~L~~L~l~~n~l~--~~~~~~l~~l~~ 113 (197)
T 4ezg_A 40 EAQMNSLTYITLANIN-VTDLT-GIEYAHNIKDLTINNIH-ATNYN-PISGLSNLERLRIMGKDVT--SDKIPNLSGLTS 113 (197)
T ss_dssp HHHHHTCCEEEEESSC-CSCCT-TGGGCTTCSEEEEESCC-CSCCG-GGTTCTTCCEEEEECTTCB--GGGSCCCTTCTT
T ss_pred hhhcCCccEEeccCCC-ccChH-HHhcCCCCCEEEccCCC-CCcch-hhhcCCCCCEEEeECCccC--cccChhhcCCCC
Confidence 4678889999999998 88888 68999999999999985 66665 6888999999999865442 224556666777
Q ss_pred CCccCceEecCCCcccccCCchhhhccccCcceeeecccccccCCCCcchhhhcccccccccccEEEEEcCCCCcchhHh
Q 001993 701 LRTLGAFVASGGKSSKACSSLKSLNKLKHLEGSLTLRGLGNERDLGDDNDDEKVDLKSKMKLVDLHLRFDSTTKTKDHRV 780 (985)
Q Consensus 701 L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 780 (985)
|++|++..+.... .
T Consensus 114 L~~L~Ls~n~i~~------------------------------------------------------------------~ 127 (197)
T 4ezg_A 114 LTLLDISHSAHDD------------------------------------------------------------------S 127 (197)
T ss_dssp CCEEECCSSBCBG------------------------------------------------------------------G
T ss_pred CCEEEecCCccCc------------------------------------------------------------------H
Confidence 7666553221110 0
Q ss_pred hhcCCCCCCCCCeEEEeecc-CCCCCCCChhhhccccccEEeEeccCCCCcCCCCCCCCccceeeccCCC
Q 001993 781 VLECLQPPSSLEKLGIYGYA-GDTISPTSDWMLSLAKLRVLTLRFCNECECLPPLGKLPCLETLVLEGMS 849 (985)
Q Consensus 781 ~~~~l~~~~~L~~L~l~~~~-~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~ 849 (985)
.+..+..+++|+.|++++|. ...+ | .+..+++|+.|++++|. +..++.+..+++|+.|++++++
T Consensus 128 ~~~~l~~l~~L~~L~L~~n~~i~~~---~-~l~~l~~L~~L~l~~n~-i~~~~~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 128 ILTKINTLPKVNSIDLSYNGAITDI---M-PLKTLPELKSLNIQFDG-VHDYRGIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp GHHHHTTCSSCCEEECCSCTBCCCC---G-GGGGCSSCCEEECTTBC-CCCCTTGGGCSSCCEEEECBC-
T ss_pred hHHHHhhCCCCCEEEccCCCCcccc---H-hhcCCCCCCEEECCCCC-CcChHHhccCCCCCEEEeeCcc
Confidence 01112234667777777776 4444 4 56778888888888884 5567778888889988888754
No 112
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.20 E-value=1.6e-10 Score=121.40 Aligned_cols=169 Identities=20% Similarity=0.244 Sum_probs=113.9
Q ss_pred cceeecCC--CCCCCCcccccCCCCCeEecCCCCCccccch-hhcCCCCCcEeeccCcccccccc-hhhhhccccceeec
Q 001993 605 CLRSIDGL--PVGQIPKGIKKLIHLRYLALGENPWIKELPE-ALCELCNLQTLDVSLCHYLKRLP-ERIGQLINLRHLMN 680 (985)
Q Consensus 605 ~Lr~L~l~--~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lP~-~i~~L~~L~~L~l~~~~~l~~lP-~~i~~L~~L~~L~l 680 (985)
..+.++++ .+..+|..+. .+|++|+|++|. +..++. .+..+++|++|++++|. +..++ ..+..+++|++|++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTG-LATLSDATFRGLTKLTWLNLDYNQ-LQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred CCeEEecCCCCccccCCCCC--CCCCEEEccCCC-cCccCHhHhcCcccCCEEECCCCc-CCccCHhHhccCCcCCEEEC
Confidence 35566766 6777787665 578889998888 666554 68888899999999887 55554 44688888999988
Q ss_pred ccccccccccCCC-cCCCCCCCCccCceEecCCCcccccCCchhhhccccCcceeeecccccccCCCCcchhhhcccccc
Q 001993 681 SKEEWSRLSYMPR-GMERLTGLRTLGAFVASGGKSSKACSSLKSLNKLKHLEGSLTLRGLGNERDLGDDNDDEKVDLKSK 759 (985)
Q Consensus 681 ~~n~~~~l~~~p~-~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~~~~l~~~ 759 (985)
++|.. ..+|. .++.+++|++|++..+.... +
T Consensus 91 ~~n~l---~~~~~~~~~~l~~L~~L~L~~N~l~~----------------~----------------------------- 122 (251)
T 3m19_A 91 ANNQL---ASLPLGVFDHLTQLDKLYLGGNQLKS----------------L----------------------------- 122 (251)
T ss_dssp TTSCC---CCCCTTTTTTCTTCCEEECCSSCCCC----------------C-----------------------------
T ss_pred CCCcc---cccChhHhcccCCCCEEEcCCCcCCC----------------c-----------------------------
Confidence 86544 34443 35566666666553211110 0
Q ss_pred cccccEEEEEcCCCCcchhHhhhcCCCCCCCCCeEEEeeccCCCCCCCChhhhccccccEEeEeccCCCCcCC--CCCCC
Q 001993 760 MKLVDLHLRFDSTTKTKDHRVVLECLQPPSSLEKLGIYGYAGDTISPTSDWMLSLAKLRVLTLRFCNECECLP--PLGKL 837 (985)
Q Consensus 760 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~--~l~~l 837 (985)
....+..+++|+.|++++|....+. +..+..+++|+.|+|++|.. ..++ .+..+
T Consensus 123 ---------------------~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l 178 (251)
T 3m19_A 123 ---------------------PSGVFDRLTKLKELRLNTNQLQSIP--AGAFDKLTNLQTLSLSTNQL-QSVPHGAFDRL 178 (251)
T ss_dssp ---------------------CTTTTTTCTTCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCC-SCCCTTTTTTC
T ss_pred ---------------------ChhHhccCCcccEEECcCCcCCccC--HHHcCcCcCCCEEECCCCcC-CccCHHHHhCC
Confidence 0011233567778888887766662 34677888999999998854 4444 47788
Q ss_pred CccceeeccCCC
Q 001993 838 PCLETLVLEGMS 849 (985)
Q Consensus 838 ~~L~~L~L~~~~ 849 (985)
++|+.|+|++++
T Consensus 179 ~~L~~L~l~~N~ 190 (251)
T 3m19_A 179 GKLQTITLFGNQ 190 (251)
T ss_dssp TTCCEEECCSCC
T ss_pred CCCCEEEeeCCc
Confidence 999999998865
No 113
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.17 E-value=3.5e-10 Score=116.40 Aligned_cols=186 Identities=12% Similarity=0.071 Sum_probs=118.4
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhcc-CC-ceEEEEeCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNH-FN-EKIWVCVSE 256 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-f~-~~~wv~~s~ 256 (985)
+++||+..++++.+++.... ...+.|+|++|+|||++|+.+++. .... +. ..+.+..+.
T Consensus 18 ~~~g~~~~~~~l~~~l~~~~-----------------~~~~ll~G~~G~GKT~l~~~l~~~--~~~~~~~~~~~~~~~~~ 78 (226)
T 2chg_A 18 EVVGQDEVIQRLKGYVERKN-----------------IPHLLFSGPPGTGKTATAIALARD--LFGENWRDNFIEMNASD 78 (226)
T ss_dssp GCCSCHHHHHHHHHHHHTTC-----------------CCCEEEECSTTSSHHHHHHHHHHH--HHGGGGGGGEEEEETTC
T ss_pred HHcCcHHHHHHHHHHHhCCC-----------------CCeEEEECCCCCCHHHHHHHHHHH--HhccccccceEEecccc
Confidence 68999999999999997432 223899999999999999999873 3222 22 233344433
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEEEEEcCchh
Q 001993 257 PFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRILVTTRNEK 336 (985)
Q Consensus 257 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~ 336 (985)
......+...+. ....... .-.+++.+||+||++......++.+...+.....+.++|+||+...
T Consensus 79 ~~~~~~~~~~~~-~~~~~~~--------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~ 143 (226)
T 2chg_A 79 ERGIDVVRHKIK-EFARTAP--------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVS 143 (226)
T ss_dssp TTCHHHHHHHHH-HHHTSCC--------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred ccChHHHHHHHH-HHhcccC--------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChh
Confidence 333222222111 1111000 0125789999999977665666777777766566788999887653
Q ss_pred h-HHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHHHHHhh
Q 001993 337 V-AIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVKTLGSL 404 (985)
Q Consensus 337 v-~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~ 404 (985)
. ...+.. ....+.+.+++.++..+++.+.+...+.. .. .+....|++.++|.|..+..+...
T Consensus 144 ~~~~~l~~-r~~~i~~~~~~~~~~~~~l~~~~~~~~~~--~~---~~~~~~l~~~~~g~~r~l~~~l~~ 206 (226)
T 2chg_A 144 RIIEPIQS-RCAVFRFKPVPKEAMKKRLLEICEKEGVK--IT---EDGLEALIYISGGDFRKAINALQG 206 (226)
T ss_dssp GSCHHHHT-TSEEEECCCCCHHHHHHHHHHHHHHHTCC--BC---HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hcCHHHHH-hCceeecCCCCHHHHHHHHHHHHHHcCCC--CC---HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 2 111111 12478999999999999998876432211 11 245678889999999966554443
No 114
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.14 E-value=5.8e-12 Score=140.30 Aligned_cols=65 Identities=15% Similarity=0.083 Sum_probs=37.8
Q ss_pred CcccccCCCCCeEecCCCCCccccc-----hhhcCCC-CCcEeeccCcccccccchhhhhc-----cccceeecccc
Q 001993 618 PKGIKKLIHLRYLALGENPWIKELP-----EALCELC-NLQTLDVSLCHYLKRLPERIGQL-----INLRHLMNSKE 683 (985)
Q Consensus 618 p~~i~~l~~Lr~L~L~~~~~i~~lP-----~~i~~L~-~L~~L~l~~~~~l~~lP~~i~~L-----~~L~~L~l~~n 683 (985)
|..+....+|++|+|++|. +...+ ..+..++ +|++|+|++|..-...+..+..+ ++|++|++++|
T Consensus 15 ~~~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n 90 (362)
T 3goz_A 15 EEFTSIPHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGN 90 (362)
T ss_dssp HHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSS
T ss_pred HHHHhCCCCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCC
Confidence 3334444557777777776 65554 4555666 67777777776222334455554 66777776643
No 115
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.13 E-value=2.2e-12 Score=151.44 Aligned_cols=120 Identities=20% Similarity=0.228 Sum_probs=69.1
Q ss_pred CCCeEEEeeccCCCCCCCChhhhccccccEEeEeccCCCCcCC-CCCCCCccceeeccCCCCceEeCCcccCCchhhhhh
Q 001993 790 SLEKLGIYGYAGDTISPTSDWMLSLAKLRVLTLRFCNECECLP-PLGKLPCLETLVLEGMSSVKRLGNGFLGIAEDHQAR 868 (985)
Q Consensus 790 ~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~ 868 (985)
.|+.|++++|....+ |. +..+++|+.|+|++|. ++.+| .++.+++|+.|+|+++. ++.+| .
T Consensus 442 ~L~~L~Ls~n~l~~l---p~-~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp-~----------- 503 (567)
T 1dce_A 442 DVRVLHLAHKDLTVL---CH-LEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQASDNA-LENVD-G----------- 503 (567)
T ss_dssp TCSEEECTTSCCSSC---CC-GGGGTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSC-CCCCG-G-----------
T ss_pred CceEEEecCCCCCCC---cC-ccccccCcEeecCccc-ccccchhhhcCCCCCEEECCCCC-CCCCc-c-----------
Confidence 466677777666555 55 6667777777777773 33555 36677777777777643 44443 1
Q ss_pred hhhhhcccccccCCCCCccceeeccccccccccccccccCcccccccccceeecccccCCCCCCCC----CCCCCcCeEE
Q 001993 869 ADQAETASSIIRDTAFPRLETLEFLDMEKWEEWDDCEIAGGKTIMPRLRHLSICWSPELKALPDYI----LGSTSLDKLL 944 (985)
Q Consensus 869 ~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~lp~L~~L~i~~c~~L~~lp~~~----~~l~~L~~L~ 944 (985)
...+++|+.|+|+++ .++.+.. ......+++|+.|++++| .++.+|... ..+++|+.|+
T Consensus 504 ------------l~~l~~L~~L~Ls~N-~l~~~~~---p~~l~~l~~L~~L~L~~N-~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 504 ------------VANLPRLQELLLCNN-RLQQSAA---IQPLVSCPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp ------------GTTCSSCCEEECCSS-CCCSSST---TGGGGGCTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEEE
T ss_pred ------------cCCCCCCcEEECCCC-CCCCCCC---cHHHhcCCCCCEEEecCC-cCCCCccHHHHHHHHCcccCccC
Confidence 124566777776663 3444420 003446777777777776 355444332 2266666664
No 116
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.13 E-value=1.9e-10 Score=120.78 Aligned_cols=150 Identities=25% Similarity=0.344 Sum_probs=90.1
Q ss_pred CCeEEEEEEcCCCCCccCCCccccCCCCceEEEccCcCCcchhhhHHHhhccCCcceeecCC--CCCCCC-cccccCCCC
Q 001993 551 WKARHLMITGETRSEMVPFPSMVYDETKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL--PVGQIP-KGIKKLIHL 627 (985)
Q Consensus 551 ~~~r~l~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~--~~~~lp-~~i~~l~~L 627 (985)
..++.+.+.++.+.... +..+..+++|+.|+++++.. ....+..|.++++|++|+++ .+..+| ..+..+.+|
T Consensus 35 ~~l~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l---~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 109 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLS--DATFRGLTKLTWLNLDYNQL---QTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQL 109 (251)
T ss_dssp TTCCEEECTTSCCCCCC--TTTTTTCTTCCEEECTTSCC---CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred CCCCEEEccCCCcCccC--HhHhcCcccCCEEECCCCcC---CccCHhHhccCCcCCEEECCCCcccccChhHhcccCCC
Confidence 45666666666653222 33456667777777776653 22234446666777777776 455554 335666777
Q ss_pred CeEecCCCCCccccchh-hcCCCCCcEeeccCcccccccch-hhhhccccceeecccccccccccCCC-cCCCCCCCCcc
Q 001993 628 RYLALGENPWIKELPEA-LCELCNLQTLDVSLCHYLKRLPE-RIGQLINLRHLMNSKEEWSRLSYMPR-GMERLTGLRTL 704 (985)
Q Consensus 628 r~L~L~~~~~i~~lP~~-i~~L~~L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~n~~~~l~~~p~-~i~~L~~L~~L 704 (985)
++|+|++|. +..+|.. +..+++|++|+|++|. +..+|. .+..+++|++|++++|.. ..+|. .+..+++|+.|
T Consensus 110 ~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l---~~~~~~~~~~l~~L~~L 184 (251)
T 3m19_A 110 DKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTNQL---QSVPHGAFDRLGKLQTI 184 (251)
T ss_dssp CEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC---SCCCTTTTTTCTTCCEE
T ss_pred CEEEcCCCc-CCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCCcC---CccCHHHHhCCCCCCEE
Confidence 777777776 6666654 4667777777777766 555554 466677777777765433 33443 46666666666
Q ss_pred CceEec
Q 001993 705 GAFVAS 710 (985)
Q Consensus 705 ~~~~~~ 710 (985)
++..+.
T Consensus 185 ~l~~N~ 190 (251)
T 3m19_A 185 TLFGNQ 190 (251)
T ss_dssp ECCSCC
T ss_pred EeeCCc
Confidence 665444
No 117
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.11 E-value=6.9e-11 Score=137.89 Aligned_cols=89 Identities=20% Similarity=0.288 Sum_probs=62.5
Q ss_pred cceeecCC--CCCCCCcccccCCCCCeEecCCCCCccccchhhcCCCCCcEeeccCcccccccchhhhhccccceeeccc
Q 001993 605 CLRSIDGL--PVGQIPKGIKKLIHLRYLALGENPWIKELPEALCELCNLQTLDVSLCHYLKRLPERIGQLINLRHLMNSK 682 (985)
Q Consensus 605 ~Lr~L~l~--~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~ 682 (985)
+|+.|+++ .+..+|..+. ++|++|+|++|. +..+| ..+++|++|++++|. +..+|. +.. +|++|++++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~-l~~ip---~~l~~L~~L~Ls~N~-l~~ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQNA-LISLP---ELPASLEYLDACDNR-LSTLPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC--TTCSEEECCSSC-CSCCC---CCCTTCCEEECCSSC-CSCCCC-CCT--TCCEEECCS
T ss_pred CccEEEeCCCCCCccCHhHc--CCCCEEECcCCC-Ccccc---cccCCCCEEEccCCC-CCCcch-hhc--CCCEEECCC
Confidence 67777777 5666776663 678888888887 77777 457788888888876 666777 554 788888876
Q ss_pred ccccccccCCCcCCCCCCCCccCceEe
Q 001993 683 EEWSRLSYMPRGMERLTGLRTLGAFVA 709 (985)
Q Consensus 683 n~~~~l~~~p~~i~~L~~L~~L~~~~~ 709 (985)
|.. ..+|. .+++|+.|++..+
T Consensus 130 N~l---~~lp~---~l~~L~~L~Ls~N 150 (571)
T 3cvr_A 130 NQL---TMLPE---LPALLEYINADNN 150 (571)
T ss_dssp SCC---SCCCC---CCTTCCEEECCSS
T ss_pred CcC---CCCCC---cCccccEEeCCCC
Confidence 544 44665 5677777766544
No 118
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.09 E-value=3.7e-10 Score=113.65 Aligned_cols=144 Identities=13% Similarity=0.158 Sum_probs=102.4
Q ss_pred CeEEEEEEcCCCCCccCCCccccCCCCceEEEccCcCCcchhhhHHHhhccCCcceeecCC--CCCC-CCcccccCCCCC
Q 001993 552 KARHLMITGETRSEMVPFPSMVYDETKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL--PVGQ-IPKGIKKLIHLR 628 (985)
Q Consensus 552 ~~r~l~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~--~~~~-lp~~i~~l~~Lr 628 (985)
.++++.+.++.+. .++ .+..+++|++|.++++... . + ..+..++.|++|+++ .+.. .|..++.+++|+
T Consensus 45 ~L~~L~l~~n~i~---~l~-~l~~l~~L~~L~l~~n~~~---~-~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 45 SLTYITLANINVT---DLT-GIEYAHNIKDLTINNIHAT---N-Y-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp TCCEEEEESSCCS---CCT-TGGGCTTCSEEEEESCCCS---C-C-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred CccEEeccCCCcc---ChH-HHhcCCCCCEEEccCCCCC---c-c-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 5677888877763 233 5677888888888887431 1 1 247778888888887 3433 467788888888
Q ss_pred eEecCCCCCcc-ccchhhcCCCCCcEeeccCcccccccchhhhhccccceeecccccccccccCCCcCCCCCCCCccCce
Q 001993 629 YLALGENPWIK-ELPEALCELCNLQTLDVSLCHYLKRLPERIGQLINLRHLMNSKEEWSRLSYMPRGMERLTGLRTLGAF 707 (985)
Q Consensus 629 ~L~L~~~~~i~-~lP~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~n~~~~l~~~p~~i~~L~~L~~L~~~ 707 (985)
+|++++|. +. ..|..++.+++|++|++++|..+..+| .+..+++|++|++++|.. ..++ .+..+++|+.|++.
T Consensus 116 ~L~Ls~n~-i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i---~~~~-~l~~l~~L~~L~l~ 189 (197)
T 4ezg_A 116 LLDISHSA-HDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGV---HDYR-GIEDFPKLNQLYAF 189 (197)
T ss_dssp EEECCSSB-CBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCC---CCCT-TGGGCSSCCEEEEC
T ss_pred EEEecCCc-cCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCC---cChH-HhccCCCCCEEEee
Confidence 88888887 54 467778888888888888886567776 588888888888885443 4444 66777778777775
Q ss_pred Eec
Q 001993 708 VAS 710 (985)
Q Consensus 708 ~~~ 710 (985)
.+.
T Consensus 190 ~N~ 192 (197)
T 4ezg_A 190 SQT 192 (197)
T ss_dssp BC-
T ss_pred Ccc
Confidence 443
No 119
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.08 E-value=3.6e-10 Score=116.67 Aligned_cols=128 Identities=27% Similarity=0.383 Sum_probs=106.4
Q ss_pred CCceEEEccCcCCcchhhhHHHhhccCCcceeecCC--CCCCCCcc-cccCCCCCeEecCCCCCccccchh-hcCCCCCc
Q 001993 577 TKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL--PVGQIPKG-IKKLIHLRYLALGENPWIKELPEA-LCELCNLQ 652 (985)
Q Consensus 577 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~--~~~~lp~~-i~~l~~Lr~L~L~~~~~i~~lP~~-i~~L~~L~ 652 (985)
++|+.|.++++.. ....+..|.++++|++|+++ .+..+|.. +..+.+|++|+|++|. +..+|.. +..+++|+
T Consensus 40 ~~L~~L~Ls~n~i---~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~ 115 (229)
T 3e6j_A 40 TNAQILYLHDNQI---TKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ-LTVLPSAVFDRLVHLK 115 (229)
T ss_dssp TTCSEEECCSSCC---CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCC
T ss_pred CCCCEEEcCCCcc---CccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc-CCccChhHhCcchhhC
Confidence 8899999999874 33345668899999999998 67778754 6899999999999998 8888765 68899999
Q ss_pred EeeccCcccccccchhhhhccccceeecccccccccccCCC-cCCCCCCCCccCceEecCC
Q 001993 653 TLDVSLCHYLKRLPERIGQLINLRHLMNSKEEWSRLSYMPR-GMERLTGLRTLGAFVASGG 712 (985)
Q Consensus 653 ~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~n~~~~l~~~p~-~i~~L~~L~~L~~~~~~~~ 712 (985)
+|+|++|. +..+|..+..+++|++|++++|.. ..+|. .+..+++|+.|++..+...
T Consensus 116 ~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l---~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 116 ELFMCCNK-LTELPRGIERLTHLTHLALDQNQL---KSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp EEECCSSC-CCSCCTTGGGCTTCSEEECCSSCC---CCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred eEeccCCc-ccccCcccccCCCCCEEECCCCcC---CccCHHHHhCCCCCCEEEeeCCCcc
Confidence 99999998 889999999999999999997654 55664 4788999999988765443
No 120
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.07 E-value=4.3e-10 Score=131.22 Aligned_cols=72 Identities=21% Similarity=0.281 Sum_probs=59.4
Q ss_pred CCCeEecCCCCCccccchhhcCCCCCcEeeccCcccccccchhhhhccccceeecccccccccccCCCcCCCCCCCCccC
Q 001993 626 HLRYLALGENPWIKELPEALCELCNLQTLDVSLCHYLKRLPERIGQLINLRHLMNSKEEWSRLSYMPRGMERLTGLRTLG 705 (985)
Q Consensus 626 ~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~n~~~~l~~~p~~i~~L~~L~~L~ 705 (985)
+|++|+|++|. +..+|..+. ++|++|+|++|. +..+| ..+++|++|++++|.. ..+|. +.+ +|+.|+
T Consensus 60 ~L~~L~Ls~n~-L~~lp~~l~--~~L~~L~Ls~N~-l~~ip---~~l~~L~~L~Ls~N~l---~~ip~-l~~--~L~~L~ 126 (571)
T 3cvr_A 60 QFSELQLNRLN-LSSLPDNLP--PQITVLEITQNA-LISLP---ELPASLEYLDACDNRL---STLPE-LPA--SLKHLD 126 (571)
T ss_dssp TCSEEECCSSC-CSCCCSCCC--TTCSEEECCSSC-CSCCC---CCCTTCCEEECCSSCC---SCCCC-CCT--TCCEEE
T ss_pred CccEEEeCCCC-CCccCHhHc--CCCCEEECcCCC-Ccccc---cccCCCCEEEccCCCC---CCcch-hhc--CCCEEE
Confidence 89999999998 888998774 899999999998 88999 5689999999997654 45776 655 888887
Q ss_pred ceEec
Q 001993 706 AFVAS 710 (985)
Q Consensus 706 ~~~~~ 710 (985)
+..+.
T Consensus 127 Ls~N~ 131 (571)
T 3cvr_A 127 VDNNQ 131 (571)
T ss_dssp CCSSC
T ss_pred CCCCc
Confidence 76543
No 121
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.05 E-value=4e-11 Score=133.54 Aligned_cols=89 Identities=13% Similarity=0.048 Sum_probs=54.1
Q ss_pred cccccEEEEEcCCCCcchhHhhhcCCCC-CCCCCeEEEeeccCCCCCC--CChhhhccccccEEeEeccCCC-------C
Q 001993 760 MKLVDLHLRFDSTTKTKDHRVVLECLQP-PSSLEKLGIYGYAGDTISP--TSDWMLSLAKLRVLTLRFCNEC-------E 829 (985)
Q Consensus 760 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~--~p~~~~~l~~L~~L~L~~~~~~-------~ 829 (985)
++|+.|++++|.-. ......+...+.. +++|+.|++++|....... +...+..+++|+.|+|++|... .
T Consensus 196 ~~L~~L~Ls~N~i~-~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~ 274 (362)
T 3goz_A 196 ASVTSLDLSANLLG-LKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCK 274 (362)
T ss_dssp TTCCEEECTTSCGG-GSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHH
T ss_pred CCCCEEECCCCCCC-hhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHH
Confidence 36777777765411 1111123333333 4689999999987665420 0123346789999999998511 1
Q ss_pred cC-CCCCCCCccceeeccCCC
Q 001993 830 CL-PPLGKLPCLETLVLEGMS 849 (985)
Q Consensus 830 ~l-~~l~~l~~L~~L~L~~~~ 849 (985)
.+ ..+..+++|+.|+++++.
T Consensus 275 ~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 275 ALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp HHHTTSTTCCEEEEECTTSCB
T ss_pred HHHHHhccCCceEEEecCCCc
Confidence 12 246688899999998865
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.04 E-value=3.1e-10 Score=110.99 Aligned_cols=127 Identities=25% Similarity=0.221 Sum_probs=79.7
Q ss_pred CCceEEEccCcCCcchhhhHHHhhccCCcceeecCC--CCCCCCcccccCCCCCeEecCCCCCccc-cchhhcCCCCCcE
Q 001993 577 TKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL--PVGQIPKGIKKLIHLRYLALGENPWIKE-LPEALCELCNLQT 653 (985)
Q Consensus 577 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~--~~~~lp~~i~~l~~Lr~L~L~~~~~i~~-lP~~i~~L~~L~~ 653 (985)
++|+.|.++++... ...++..+..+++|++|+++ .+..+ ..++.+++|++|++++|. +.. +|..+..+++|++
T Consensus 24 ~~L~~L~l~~n~l~--~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 24 AAVRELVLDNCKSN--DGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENR-IFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp TSCSEEECCSCBCB--TTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCC-CCSCCCHHHHHCTTCCE
T ss_pred ccCCEEECCCCCCC--hhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCc-CchHHHHHHhhCCCCCE
Confidence 55666666665421 01233445666666666666 34444 566777777777777777 555 6666666777777
Q ss_pred eeccCcccccccc--hhhhhccccceeecccccccccccCCC----cCCCCCCCCccCceEecC
Q 001993 654 LDVSLCHYLKRLP--ERIGQLINLRHLMNSKEEWSRLSYMPR----GMERLTGLRTLGAFVASG 711 (985)
Q Consensus 654 L~l~~~~~l~~lP--~~i~~L~~L~~L~l~~n~~~~l~~~p~----~i~~L~~L~~L~~~~~~~ 711 (985)
|++++|. +..+| ..+..+++|++|++++|.. ..+|. .+..+++|+.|++..+..
T Consensus 100 L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l---~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 100 LNLSGNK-LKDISTLEPLKKLECLKSLDLFNCEV---TNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp EECBSSS-CCSSGGGGGGSSCSCCCEEECCSSGG---GTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred EeccCCc-cCcchhHHHHhcCCCCCEEEeeCCcC---cchHHHHHHHHHhCccCcEecCCCCCh
Confidence 7777776 66655 5667777777777775433 44554 566777777777765443
No 123
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.00 E-value=7.2e-10 Score=113.58 Aligned_cols=127 Identities=22% Similarity=0.273 Sum_probs=100.5
Q ss_pred CCceEEEccCcCCcchhhhHHHhhccCCcceeecCC--CCCCC-CcccccCCCCCeEecCCCCCccccchh-hcCCCCCc
Q 001993 577 TKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL--PVGQI-PKGIKKLIHLRYLALGENPWIKELPEA-LCELCNLQ 652 (985)
Q Consensus 577 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~--~~~~l-p~~i~~l~~Lr~L~L~~~~~i~~lP~~-i~~L~~L~ 652 (985)
+.++.|.+.++.. ....+..|.++++|++|+++ .+..+ |..+..+.+|++|+|++|. +..+|.. +..+++|+
T Consensus 32 ~~l~~L~l~~n~i---~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~ 107 (220)
T 2v9t_B 32 ETITEIRLEQNTI---KVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK-ITELPKSLFEGLFSLQ 107 (220)
T ss_dssp TTCCEEECCSSCC---CEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCC
T ss_pred cCCCEEECCCCcC---CCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc-CCccCHhHccCCCCCC
Confidence 6889999998864 33344568889999999998 56665 6789999999999999998 8888876 57899999
Q ss_pred EeeccCccccccc-chhhhhccccceeecccccccccccCCC-cCCCCCCCCccCceEecC
Q 001993 653 TLDVSLCHYLKRL-PERIGQLINLRHLMNSKEEWSRLSYMPR-GMERLTGLRTLGAFVASG 711 (985)
Q Consensus 653 ~L~l~~~~~l~~l-P~~i~~L~~L~~L~l~~n~~~~l~~~p~-~i~~L~~L~~L~~~~~~~ 711 (985)
+|+|++|. +..+ |..+..+++|++|++++|.. ..+|. .+..+++|+.|++..+..
T Consensus 108 ~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l---~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 108 LLLLNANK-INCLRVDAFQDLHNLNLLSLYDNKL---QTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp EEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC---SCCCTTTTTTCTTCCEEECCSSCE
T ss_pred EEECCCCC-CCEeCHHHcCCCCCCCEEECCCCcC---CEECHHHHhCCCCCCEEEeCCCCc
Confidence 99999998 6555 56788899999999997654 45554 478888999888865543
No 124
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.00 E-value=3.5e-10 Score=137.12 Aligned_cols=153 Identities=20% Similarity=0.228 Sum_probs=92.9
Q ss_pred CeEEEEEEcCCCCCccCCCccccCCCCceEEEccCcCCc-chhhhHHHhhccCCcceeecCC--CCCCCCcccccCCCCC
Q 001993 552 KARHLMITGETRSEMVPFPSMVYDETKLRSLVLDQRLSF-KPRIALSKLFDRLTCLRSIDGL--PVGQIPKGIKKLIHLR 628 (985)
Q Consensus 552 ~~r~l~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~-~~~~~~~~~~~~l~~Lr~L~l~--~~~~lp~~i~~l~~Lr 628 (985)
.++++.+..+.... .+.......+|+.+.+...... ......+..|..+..|++|+|+ .+..+|..+..+.+|+
T Consensus 174 ~~~~l~L~~n~~~~---~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~ 250 (727)
T 4b8c_D 174 LTPKIELFANGKDE---ANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLT 250 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCS
T ss_pred ccceEEeeCCCCCc---chhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCC
Confidence 45666665555421 2223333334444433332110 0112346678889999999998 6778898889999999
Q ss_pred eEecCCCCCccccchhhcCCCCCcEeeccCcccccccchhhhhccccceeecccccccccccCCCcCCCCCCCCccCceE
Q 001993 629 YLALGENPWIKELPEALCELCNLQTLDVSLCHYLKRLPERIGQLINLRHLMNSKEEWSRLSYMPRGMERLTGLRTLGAFV 708 (985)
Q Consensus 629 ~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~n~~~~l~~~p~~i~~L~~L~~L~~~~ 708 (985)
+|+|++|. +..+|..|+.|++|++|+|++|. +..+|..++.|++|++|+|++|. +..+|..+++|++|++|++..
T Consensus 251 ~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~---l~~lp~~~~~l~~L~~L~L~~ 325 (727)
T 4b8c_D 251 RLYLNGNS-LTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLKYFYFFDNM---VTTLPWEFGNLCNLQFLGVEG 325 (727)
T ss_dssp CCBCTTSC-CSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTCSEEECCSSC---CCCCCSSTTSCTTCCCEECTT
T ss_pred EEEeeCCc-CcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCCCEEECCCCC---CCccChhhhcCCCccEEeCCC
Confidence 99999998 88999999999999999999998 77899999999999999999654 467888899999999998876
Q ss_pred ecCC
Q 001993 709 ASGG 712 (985)
Q Consensus 709 ~~~~ 712 (985)
+...
T Consensus 326 N~l~ 329 (727)
T 4b8c_D 326 NPLE 329 (727)
T ss_dssp SCCC
T ss_pred CccC
Confidence 6544
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.00 E-value=2.8e-10 Score=108.77 Aligned_cols=122 Identities=26% Similarity=0.269 Sum_probs=73.4
Q ss_pred CCceEEEccCcCCcchhhhHHHhhccCCcceeecCC--CCCCCCcccccCCCCCeEecCCCCCccc-cchhhcCCCCCcE
Q 001993 577 TKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL--PVGQIPKGIKKLIHLRYLALGENPWIKE-LPEALCELCNLQT 653 (985)
Q Consensus 577 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~--~~~~lp~~i~~l~~Lr~L~L~~~~~i~~-lP~~i~~L~~L~~ 653 (985)
++++.|.++++... ...++..+..+++|++|+++ .+..+ ..++.+++|++|++++|. +.. +|..++.+++|++
T Consensus 17 ~~l~~L~l~~n~l~--~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 17 SDVKELVLDNSRSN--EGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNR-VSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp GGCSEEECTTCBCB--TTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSC-CCSCTHHHHHHCTTCCE
T ss_pred ccCeEEEccCCcCC--hhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCc-ccchHHHHhhhCCCCCE
Confidence 45666666665421 01233345566666666666 34444 556667777777777776 555 6666666777777
Q ss_pred eeccCcccccccc--hhhhhccccceeecccccccccccCCC----cCCCCCCCCccCc
Q 001993 654 LDVSLCHYLKRLP--ERIGQLINLRHLMNSKEEWSRLSYMPR----GMERLTGLRTLGA 706 (985)
Q Consensus 654 L~l~~~~~l~~lP--~~i~~L~~L~~L~l~~n~~~~l~~~p~----~i~~L~~L~~L~~ 706 (985)
|++++|. +..+| ..+..+++|++|++++|.. ..+|. .++.+++|+.|++
T Consensus 93 L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l---~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 93 LNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCEV---TNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp EECTTSC-CCSHHHHGGGGGCTTCCEEECTTCGG---GGSTTHHHHHHHHCTTCCEETT
T ss_pred EECCCCc-CCChHHHHHHhhCCCCCEEeCcCCcc---cchHHHHHHHHHHCCCcccccC
Confidence 7777776 55554 5667777777777775433 33443 3556666666654
No 126
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.97 E-value=1.9e-09 Score=109.42 Aligned_cols=127 Identities=26% Similarity=0.414 Sum_probs=96.0
Q ss_pred CCCceEEEccCcCCcchhhhHHHhhccCCcceeecCC--CCCCCCcc-cccCCCCCeEecCCCCCccccchh-hcCCCCC
Q 001993 576 ETKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL--PVGQIPKG-IKKLIHLRYLALGENPWIKELPEA-LCELCNL 651 (985)
Q Consensus 576 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~--~~~~lp~~-i~~l~~Lr~L~L~~~~~i~~lP~~-i~~L~~L 651 (985)
.++|+.|.++++.. ....+..|.++++|++|+++ .+..+|.. +..+.+|++|++++|. +..+|.. +..+++|
T Consensus 27 ~~~l~~L~l~~n~l---~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L 102 (208)
T 2o6s_A 27 PAQTTYLDLETNSL---KSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ-LQSLPNGVFDKLTQL 102 (208)
T ss_dssp CTTCSEEECCSSCC---CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTC
T ss_pred CCCCcEEEcCCCcc---CcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc-CCccCHhHhcCccCC
Confidence 45788888888864 23344557888889999888 56667654 5788999999999988 7777765 5788999
Q ss_pred cEeeccCcccccccchh-hhhccccceeecccccccccccCCCc-CCCCCCCCccCceEec
Q 001993 652 QTLDVSLCHYLKRLPER-IGQLINLRHLMNSKEEWSRLSYMPRG-MERLTGLRTLGAFVAS 710 (985)
Q Consensus 652 ~~L~l~~~~~l~~lP~~-i~~L~~L~~L~l~~n~~~~l~~~p~~-i~~L~~L~~L~~~~~~ 710 (985)
++|++++|. +..+|.. +..+++|++|++++|.. ..+|.. +..+++|+.|++..+.
T Consensus 103 ~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l---~~~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 103 KELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQL---KSVPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp CEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC---SCCCTTTTTTCTTCCEEECCSCC
T ss_pred CEEEcCCCc-CcccCHhHhccCCcCCEEECCCCcc---ceeCHHHhccCCCccEEEecCCC
Confidence 999999887 7777654 67889999999986544 455554 7788888888876553
No 127
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.97 E-value=1.6e-09 Score=111.77 Aligned_cols=130 Identities=24% Similarity=0.352 Sum_probs=109.6
Q ss_pred CCCCeEEEEEEcCCCCCccCCCccccCCCCceEEEccCcCCcchhhhHHHhhccCCcceeecCC--CCCCCCcc-cccCC
Q 001993 549 PSWKARHLMITGETRSEMVPFPSMVYDETKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL--PVGQIPKG-IKKLI 625 (985)
Q Consensus 549 ~~~~~r~l~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~--~~~~lp~~-i~~l~ 625 (985)
.+..++.+.+.++.+.... +..+..+++|+.|.++++.. ....+..|.++++|++|+++ .+..+|.. +..+.
T Consensus 38 ~~~~L~~L~Ls~n~i~~~~--~~~~~~l~~L~~L~L~~N~l---~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~ 112 (229)
T 3e6j_A 38 IPTNAQILYLHDNQITKLE--PGVFDSLINLKELYLGSNQL---GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLV 112 (229)
T ss_dssp CCTTCSEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCC---CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CCCCCCEEEcCCCccCccC--HHHhhCccCCcEEECCCCCC---CCcChhhcccCCCcCEEECCCCcCCccChhHhCcch
Confidence 3467899999998885432 56678899999999999974 33344568899999999999 67777655 68999
Q ss_pred CCCeEecCCCCCccccchhhcCCCCCcEeeccCcccccccch-hhhhccccceeecccccc
Q 001993 626 HLRYLALGENPWIKELPEALCELCNLQTLDVSLCHYLKRLPE-RIGQLINLRHLMNSKEEW 685 (985)
Q Consensus 626 ~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~n~~ 685 (985)
+|++|+|++|. +..+|..+..+++|++|+|++|. +..+|. .+..+++|++|++++|..
T Consensus 113 ~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 113 HLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp TCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred hhCeEeccCCc-ccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCCc
Confidence 99999999999 99999999999999999999998 778875 578899999999997754
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.97 E-value=6.5e-10 Score=109.57 Aligned_cols=128 Identities=20% Similarity=0.156 Sum_probs=95.7
Q ss_pred cccCCCCceEEEccCcCCcchhhhHHHhhccCCcceeecCC--CCCCCCcccccCCCCCeEecCCCCCccccchhh-cCC
Q 001993 572 MVYDETKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL--PVGQIPKGIKKLIHLRYLALGENPWIKELPEAL-CEL 648 (985)
Q Consensus 572 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~--~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lP~~i-~~L 648 (985)
.+.++++|+.|.++++.... ++.+....++|++|+++ .+..+ ..++.+++|++|++++|. +..+|+.+ ..+
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~----i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l 87 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPV----IENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNR-ICRIGEGLDQAL 87 (176)
T ss_dssp EEECTTSCEEEECTTSCCCS----CCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSC-CCEECSCHHHHC
T ss_pred hcCCcCCceEEEeeCCCCch----hHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCc-ccccCcchhhcC
Confidence 34567788888888876422 23323333488888888 55566 578888899999999998 88888665 889
Q ss_pred CCCcEeeccCcccccccch--hhhhccccceeecccccccccccCCCc----CCCCCCCCccCceEe
Q 001993 649 CNLQTLDVSLCHYLKRLPE--RIGQLINLRHLMNSKEEWSRLSYMPRG----MERLTGLRTLGAFVA 709 (985)
Q Consensus 649 ~~L~~L~l~~~~~l~~lP~--~i~~L~~L~~L~l~~n~~~~l~~~p~~----i~~L~~L~~L~~~~~ 709 (985)
++|++|++++|. +..+|. .+..+++|++|++++|.. ..+|.. ++.+++|+.|++..+
T Consensus 88 ~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i---~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 88 PDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNPV---TNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp TTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGG---GGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred CCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCCC---CCcHhHHHHHHHHCCccceeCCCcC
Confidence 999999999987 788886 788889999999986654 456664 778888888887654
No 129
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.96 E-value=2.7e-09 Score=116.72 Aligned_cols=185 Identities=17% Similarity=0.222 Sum_probs=115.9
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhc-cCC-ceEEEEeCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRN-HFN-EKIWVCVSE 256 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-~f~-~~~wv~~s~ 256 (985)
+++|++..++.+.+++..+. .+.+.|+|++|+||||+|+.+++. ... .+. ..++++.++
T Consensus 22 ~~~g~~~~~~~l~~~l~~~~-----------------~~~~ll~G~~G~GKt~la~~l~~~--l~~~~~~~~~~~~~~~~ 82 (323)
T 1sxj_B 22 DIVGNKETIDRLQQIAKDGN-----------------MPHMIISGMPGIGKTTSVHCLAHE--LLGRSYADGVLELNASD 82 (323)
T ss_dssp GCCSCTHHHHHHHHHHHSCC-----------------CCCEEEECSTTSSHHHHHHHHHHH--HHGGGHHHHEEEECTTS
T ss_pred HHHCCHHHHHHHHHHHHcCC-----------------CCeEEEECcCCCCHHHHHHHHHHH--hcCCcccCCEEEecCcc
Confidence 69999999999999987432 223899999999999999999873 321 121 234444333
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh-cCceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEEEEEcCch
Q 001993 257 PFDDIRIAKAILESLKGSATNAVESETVLKQLRESI-EGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRILVTTRNE 335 (985)
Q Consensus 257 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~ 335 (985)
..... ..+.++..+.... ..+ .+++.++|+||++......++.+...+.....++++|+||...
T Consensus 83 ~~~~~-~i~~~~~~~~~~~--------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~ 147 (323)
T 1sxj_B 83 DRGID-VVRNQIKHFAQKK--------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQS 147 (323)
T ss_dssp CCSHH-HHHTHHHHHHHBC--------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCG
T ss_pred ccChH-HHHHHHHHHHhcc--------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCCh
Confidence 22221 1222222211000 001 3568999999997765556666777766556677888888764
Q ss_pred h-hHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhH-HHHHHh
Q 001993 336 K-VAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLA-VKTLGS 403 (985)
Q Consensus 336 ~-v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLa-i~~~~~ 403 (985)
. +...+.. ....+++.+++.++..+++...+...+.. .+ .+....|++.++|.|.. +..+..
T Consensus 148 ~~l~~~l~s-r~~~i~~~~~~~~~~~~~l~~~~~~~~~~--~~---~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 148 NKIIEPLQS-QCAILRYSKLSDEDVLKRLLQIIKLEDVK--YT---NDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp GGSCHHHHT-TSEEEECCCCCHHHHHHHHHHHHHHHTCC--BC---HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhchhHHHh-hceEEeecCCCHHHHHHHHHHHHHHcCCC--CC---HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3 2111111 12579999999999999998866432211 11 24577899999999954 444433
No 130
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.96 E-value=4.1e-09 Score=115.24 Aligned_cols=267 Identities=16% Similarity=0.073 Sum_probs=146.1
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
+++|++..++.+..++..... . ......|.|+|++|+|||++|+.+++. ... ..++++.+...
T Consensus 13 ~~ig~~~~~~~l~~~l~~~~~---------~---~~~~~~vll~G~~GtGKT~la~~i~~~--~~~---~~~~~~~~~~~ 75 (324)
T 1hqc_A 13 EYIGQERLKQKLRVYLEAAKA---------R---KEPLEHLLLFGPPGLGKTTLAHVIAHE--LGV---NLRVTSGPAIE 75 (324)
T ss_dssp TCCSCHHHHHHHHHHHHHHHH---------H---CSCCCCCEEECCTTCCCHHHHHHHHHH--HTC---CEEEECTTTCC
T ss_pred HhhCHHHHHHHHHHHHHHHHc---------c---CCCCCcEEEECCCCCCHHHHHHHHHHH--hCC---CEEEEeccccC
Confidence 799999999998888763210 0 122356899999999999999999873 322 22344433322
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCCCcccHHHHHhhhcCCC---------------
Q 001993 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTEEPQNWEQLLGCLRCGS--------------- 323 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~--------------- 323 (985)
... ++...+... ..++.+|+||++..........+...+....
T Consensus 76 ~~~---------------------~l~~~l~~~-~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~ 133 (324)
T 1hqc_A 76 KPG---------------------DLAAILANS-LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIR 133 (324)
T ss_dssp SHH---------------------HHHHHHTTT-CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEE
T ss_pred ChH---------------------HHHHHHHHh-ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccc
Confidence 211 111111110 1356799999997665555555655544221
Q ss_pred ---CCcEEEEEcCchh-hHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHH
Q 001993 324 ---KESRILVTTRNEK-VAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVK 399 (985)
Q Consensus 324 ---~gs~iivTtR~~~-v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 399 (985)
.+.++|.||.... +...+...-...+.+.+++.++..+++.+.+...... .+ .+....+++.++|.|-.+.
T Consensus 134 ~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~--~~---~~~~~~l~~~~~G~~r~l~ 208 (324)
T 1hqc_A 134 LELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVR--IT---EEAALEIGRRSRGTMRVAK 208 (324)
T ss_dssp EECCCCEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCC--CC---HHHHHHHHHHSCSCHHHHH
T ss_pred cCCCCEEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCC--CC---HHHHHHHHHHccCCHHHHH
Confidence 2345676666432 1111111101478999999999999998876543321 11 2557889999999998887
Q ss_pred HHHhhhhc------C--CChHHHHHHHHhhhhhhhccccccchhhhcccCCCCcchhHHHhhhccCCCCc----------
Q 001993 400 TLGSLLRF------K--GKIEEWQRVLENELWELEELDEGLLGPLLLSYLDLPPPLKKCFSYCAIFPKDS---------- 461 (985)
Q Consensus 400 ~~~~~L~~------~--~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl~~a~fp~~~---------- 461 (985)
.+...+.. . -+.+....++.. +...+..++...+..+..+.-...+.
T Consensus 209 ~~l~~~~~~a~~~~~~~i~~~~~~~~~~~---------------~~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~ 273 (324)
T 1hqc_A 209 RLFRRVRDFAQVAGEEVITRERALEALAA---------------LGLDELGLEKRDREILEVLILRFGGGPVGLATLATA 273 (324)
T ss_dssp HHHHHHTTTSTTTSCSCCCHHHHHHHHHH---------------HTCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHH---------------hcccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence 66554421 1 123333333322 12223445554445444433221111
Q ss_pred -ccChhHHHH----HHhhcCcccccCc-cch-hhHhHHHH-HHHhhccccc
Q 001993 462 -RLEKDKLIR----LWMAQDYLKVKGR-EDM-VVGEGYFE-NLAMRSLFQD 504 (985)
Q Consensus 462 -~i~~~~Li~----~Wiaeg~i~~~~~-~~~-~~~~~~~~-~L~~~~ll~~ 504 (985)
.+++..+.+ +-+..|++..... ... +.|.+||. ++.+|+|+|+
T Consensus 274 lgi~~~tl~~~l~~~~i~~~li~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 274 LSEDPGTLEEVHEPYLIRQGLLKRTPRGRVPTELAYRHLGYPPPVGPLLEP 324 (324)
T ss_dssp TTSCHHHHHHHTHHHHHHTTSEEEETTEEEECHHHHHHTTCCCCC------
T ss_pred hCCCHHHHHHHHhHHHHHhcchhcCCccceecHHHHHHHhcCCCCCCCCCC
Confidence 133333332 3456788865443 333 88888887 8889998875
No 131
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.95 E-value=1.3e-09 Score=106.58 Aligned_cols=135 Identities=20% Similarity=0.191 Sum_probs=108.8
Q ss_pred CCCCeEEEEEEcCCCCCccCCCccccCCCCceEEEccCcCCcchhhhHHHhhccCCcceeecCC--CCCC-CCcccccCC
Q 001993 549 PSWKARHLMITGETRSEMVPFPSMVYDETKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL--PVGQ-IPKGIKKLI 625 (985)
Q Consensus 549 ~~~~~r~l~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~--~~~~-lp~~i~~l~ 625 (985)
.+..++++.+.++.+.. ..++..+..+++|+.|.++++... .. ..|..+++|++|+++ .+.. +|..+..++
T Consensus 22 ~~~~L~~L~l~~n~l~~-~~i~~~~~~l~~L~~L~l~~n~l~---~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 95 (168)
T 2ell_A 22 TPAAVRELVLDNCKSND-GKIEGLTAEFVNLEFLSLINVGLI---SV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLP 95 (168)
T ss_dssp CTTSCSEEECCSCBCBT-TBCSSCCGGGGGCCEEEEESSCCC---CC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCT
T ss_pred CcccCCEEECCCCCCCh-hhHHHHHHhCCCCCEEeCcCCCCC---Ch--hhhccCCCCCEEECcCCcCchHHHHHHhhCC
Confidence 34678899999887741 134666788999999999998743 22 558899999999998 5555 777778899
Q ss_pred CCCeEecCCCCCccccc--hhhcCCCCCcEeeccCcccccccch----hhhhccccceeecccccccccccCCCc
Q 001993 626 HLRYLALGENPWIKELP--EALCELCNLQTLDVSLCHYLKRLPE----RIGQLINLRHLMNSKEEWSRLSYMPRG 694 (985)
Q Consensus 626 ~Lr~L~L~~~~~i~~lP--~~i~~L~~L~~L~l~~~~~l~~lP~----~i~~L~~L~~L~l~~n~~~~l~~~p~~ 694 (985)
+|++|++++|. +..+| ..+..+++|++|++++|. +..+|. .+..+++|++|++++|. +..+|..
T Consensus 96 ~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~---~~~~~~~ 165 (168)
T 2ell_A 96 NLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRE---DQEAPDS 165 (168)
T ss_dssp TCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETT---SCBCCSS
T ss_pred CCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCC---hhhcccc
Confidence 99999999998 88887 789999999999999998 778876 78899999999999443 3555543
No 132
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.94 E-value=2e-09 Score=110.25 Aligned_cols=145 Identities=16% Similarity=0.184 Sum_probs=105.5
Q ss_pred EEEEEcCCCCCccCCCccccCCCCceEEEccCcCCcchhhhHHHhhccCCcceeecCC--CCCCCCc-ccccCCCCCeEe
Q 001993 555 HLMITGETRSEMVPFPSMVYDETKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL--PVGQIPK-GIKKLIHLRYLA 631 (985)
Q Consensus 555 ~l~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~--~~~~lp~-~i~~l~~Lr~L~ 631 (985)
.+.+.++.+. .+|..+ .+.++.|.++++...... ....|.++++|++|+++ .+..++. .+..+.+|++|+
T Consensus 15 ~l~~s~n~l~---~iP~~~--~~~~~~L~L~~N~l~~~~--~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~ 87 (220)
T 2v70_A 15 TVDCSNQKLN---KIPEHI--PQYTAELRLNNNEFTVLE--ATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEIL 87 (220)
T ss_dssp EEECCSSCCS---SCCSCC--CTTCSEEECCSSCCCEEC--CCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred EeEeCCCCcc---cCccCC--CCCCCEEEcCCCcCCccC--chhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEE
Confidence 4555555552 234333 345688999888642111 12447889999999998 5666654 688999999999
Q ss_pred cCCCCCccccch-hhcCCCCCcEeeccCccccccc-chhhhhccccceeecccccccccccC-CCcCCCCCCCCccCceE
Q 001993 632 LGENPWIKELPE-ALCELCNLQTLDVSLCHYLKRL-PERIGQLINLRHLMNSKEEWSRLSYM-PRGMERLTGLRTLGAFV 708 (985)
Q Consensus 632 L~~~~~i~~lP~-~i~~L~~L~~L~l~~~~~l~~l-P~~i~~L~~L~~L~l~~n~~~~l~~~-p~~i~~L~~L~~L~~~~ 708 (985)
|++|. +..+|. .+..+++|++|+|++|. +..+ |..+..+++|++|++++|.. ..+ |..+..+++|+.|++..
T Consensus 88 Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l---~~~~~~~~~~l~~L~~L~L~~ 162 (220)
T 2v70_A 88 LTSNR-LENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQI---TTVAPGAFDTLHSLSTLNLLA 162 (220)
T ss_dssp CCSSC-CCCCCGGGGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTSCC---CCBCTTTTTTCTTCCEEECCS
T ss_pred CCCCc-cCccCHhHhcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCCcC---CEECHHHhcCCCCCCEEEecC
Confidence 99998 777765 48889999999999998 5555 67788899999999996654 444 66788899999888865
Q ss_pred ecC
Q 001993 709 ASG 711 (985)
Q Consensus 709 ~~~ 711 (985)
+..
T Consensus 163 N~l 165 (220)
T 2v70_A 163 NPF 165 (220)
T ss_dssp CCE
T ss_pred cCC
Confidence 543
No 133
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.92 E-value=6.3e-09 Score=109.74 Aligned_cols=143 Identities=20% Similarity=0.135 Sum_probs=100.5
Q ss_pred CCeEEEEEEcCCCCCccCCCccccCCCCceEEEccCcCCcchhhhHHHhhccCCcceeecCC--CCCCCCcccccCCCCC
Q 001993 551 WKARHLMITGETRSEMVPFPSMVYDETKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL--PVGQIPKGIKKLIHLR 628 (985)
Q Consensus 551 ~~~r~l~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~--~~~~lp~~i~~l~~Lr 628 (985)
..++.+.+.++.+.. .+ .+..+++|+.|.++++... . ++. +.+++.|+.|+++ .+..+|.... .+|+
T Consensus 41 ~~L~~L~l~~n~i~~---l~-~l~~l~~L~~L~L~~N~i~---~-~~~-l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~ 109 (263)
T 1xeu_A 41 SGVQNFNGDNSNIQS---LA-GMQFFTNLKELHLSHNQIS---D-LSP-LKDLTKLEELSVNRNRLKNLNGIPS--ACLS 109 (263)
T ss_dssp TTCSEEECTTSCCCC---CT-TGGGCTTCCEEECCSSCCC---C-CGG-GTTCSSCCEEECCSSCCSCCTTCCC--SSCC
T ss_pred CcCcEEECcCCCccc---ch-HHhhCCCCCEEECCCCccC---C-Chh-hccCCCCCEEECCCCccCCcCcccc--Cccc
Confidence 356667777666532 23 5667788888888887642 2 222 7788888888887 5666665333 7888
Q ss_pred eEecCCCCCccccchhhcCCCCCcEeeccCcccccccchhhhhccccceeecccccccccccCCCcCCCCCCCCccCceE
Q 001993 629 YLALGENPWIKELPEALCELCNLQTLDVSLCHYLKRLPERIGQLINLRHLMNSKEEWSRLSYMPRGMERLTGLRTLGAFV 708 (985)
Q Consensus 629 ~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~n~~~~l~~~p~~i~~L~~L~~L~~~~ 708 (985)
+|++++|. +..+| .+..+++|++|++++|. +..+| .+..+++|++|++++|.... + ..+..+++|+.|++..
T Consensus 110 ~L~L~~N~-l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~L~~L~L~~N~i~~---~-~~l~~l~~L~~L~l~~ 181 (263)
T 1xeu_A 110 RLFLDNNE-LRDTD-SLIHLKNLEILSIRNNK-LKSIV-MLGFLSKLEVLDLHGNEITN---T-GGLTRLKKVNWIDLTG 181 (263)
T ss_dssp EEECCSSC-CSBSG-GGTTCTTCCEEECTTSC-CCBCG-GGGGCTTCCEEECTTSCCCB---C-TTSTTCCCCCEEEEEE
T ss_pred EEEccCCc-cCCCh-hhcCcccccEEECCCCc-CCCCh-HHccCCCCCEEECCCCcCcc---h-HHhccCCCCCEEeCCC
Confidence 88888887 77776 47888888888888887 77776 57888888888888665533 3 5577788888887776
Q ss_pred ecCC
Q 001993 709 ASGG 712 (985)
Q Consensus 709 ~~~~ 712 (985)
+...
T Consensus 182 N~~~ 185 (263)
T 1xeu_A 182 QKCV 185 (263)
T ss_dssp EEEE
T ss_pred Cccc
Confidence 5433
No 134
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.91 E-value=5e-09 Score=106.38 Aligned_cols=147 Identities=22% Similarity=0.358 Sum_probs=115.5
Q ss_pred CCCeEEEEEEcCCCCCccCCCccccCCCCceEEEccCcCCcchhhhHHHhhccCCcceeecCC--CCCCCCcc-cccCCC
Q 001993 550 SWKARHLMITGETRSEMVPFPSMVYDETKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL--PVGQIPKG-IKKLIH 626 (985)
Q Consensus 550 ~~~~r~l~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~--~~~~lp~~-i~~l~~ 626 (985)
+..++++.+.++.+.... +..+..+++|+.|++.++.. ....+..|.++++|++|+++ .+..+|.. +..+.+
T Consensus 27 ~~~l~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l---~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 101 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLP--NGVFDELTSLTQLYLGGNKL---QSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQ 101 (208)
T ss_dssp CTTCSEEECCSSCCCCCC--TTTTTTCTTCSEEECCSSCC---CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCCCcEEEcCCCccCcCC--hhhhcccccCcEEECCCCcc---CccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccC
Confidence 457889999988875322 34567899999999999864 33345567899999999998 67777755 689999
Q ss_pred CCeEecCCCCCccccchh-hcCCCCCcEeeccCcccccccchh-hhhccccceeecccccccccccCCCcCCCCCCCCcc
Q 001993 627 LRYLALGENPWIKELPEA-LCELCNLQTLDVSLCHYLKRLPER-IGQLINLRHLMNSKEEWSRLSYMPRGMERLTGLRTL 704 (985)
Q Consensus 627 Lr~L~L~~~~~i~~lP~~-i~~L~~L~~L~l~~~~~l~~lP~~-i~~L~~L~~L~l~~n~~~~l~~~p~~i~~L~~L~~L 704 (985)
|++|++++|. +..+|.. +..+++|++|++++|. +..+|.. +..+++|++|++++|.. .+.+++|+.|
T Consensus 102 L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~---------~~~~~~l~~L 170 (208)
T 2o6s_A 102 LKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPW---------DCTCPGIRYL 170 (208)
T ss_dssp CCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCCB---------CCCTTTTHHH
T ss_pred CCEEEcCCCc-CcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCCe---------ecCCCCHHHH
Confidence 9999999998 8888775 7899999999999998 7777765 68899999999996643 2345677887
Q ss_pred CceEecCC
Q 001993 705 GAFVASGG 712 (985)
Q Consensus 705 ~~~~~~~~ 712 (985)
.++.+...
T Consensus 171 ~~~~n~~~ 178 (208)
T 2o6s_A 171 SEWINKHS 178 (208)
T ss_dssp HHHHHHCT
T ss_pred HHHHHhCC
Confidence 77654433
No 135
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.90 E-value=3.1e-09 Score=108.78 Aligned_cols=129 Identities=20% Similarity=0.265 Sum_probs=107.4
Q ss_pred CCCeEEEEEEcCCCCCccCCCccccCCCCceEEEccCcCCcchhhhHHHhhccCCcceeecCC--CCCCCCcc-cccCCC
Q 001993 550 SWKARHLMITGETRSEMVPFPSMVYDETKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL--PVGQIPKG-IKKLIH 626 (985)
Q Consensus 550 ~~~~r~l~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~--~~~~lp~~-i~~l~~ 626 (985)
+..++.+.+.++.+.... +..+..+++|+.|+++++.. ....+..|.++++|++|+++ .+..+|.. +..+.+
T Consensus 31 ~~~l~~L~l~~n~i~~i~--~~~~~~l~~L~~L~Ls~N~i---~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~ 105 (220)
T 2v9t_B 31 PETITEIRLEQNTIKVIP--PGAFSPYKKLRRIDLSNNQI---SELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFS 105 (220)
T ss_dssp CTTCCEEECCSSCCCEEC--TTSSTTCTTCCEEECCSSCC---CEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CcCCCEEECCCCcCCCcC--HhHhhCCCCCCEEECCCCcC---CCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCC
Confidence 457899999988875322 44678899999999999974 33346679999999999999 78888876 588999
Q ss_pred CCeEecCCCCCcccc-chhhcCCCCCcEeeccCcccccccch-hhhhccccceeecccccc
Q 001993 627 LRYLALGENPWIKEL-PEALCELCNLQTLDVSLCHYLKRLPE-RIGQLINLRHLMNSKEEW 685 (985)
Q Consensus 627 Lr~L~L~~~~~i~~l-P~~i~~L~~L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~n~~ 685 (985)
|++|+|++|. +..+ |..+..+++|++|+|++|. +..+|. .+..+++|++|++++|.+
T Consensus 106 L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 106 LQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCCc
Confidence 9999999999 7776 5678999999999999998 777765 478899999999998764
No 136
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.89 E-value=1.9e-09 Score=102.91 Aligned_cols=124 Identities=22% Similarity=0.202 Sum_probs=102.5
Q ss_pred CCCeEEEEEEcCCCCCccCCCccccCCCCceEEEccCcCCcchhhhHHHhhccCCcceeecCC--CCCC-CCcccccCCC
Q 001993 550 SWKARHLMITGETRSEMVPFPSMVYDETKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL--PVGQ-IPKGIKKLIH 626 (985)
Q Consensus 550 ~~~~r~l~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~--~~~~-lp~~i~~l~~ 626 (985)
+..++++.+.++.... ...+..+..+++|+.|.++++..... ..+.++++|++|+++ .+.. +|..++.+++
T Consensus 16 ~~~l~~L~l~~n~l~~-~~~~~~~~~l~~L~~L~l~~n~l~~~-----~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 89 (149)
T 2je0_A 16 PSDVKELVLDNSRSNE-GKLEGLTDEFEELEFLSTINVGLTSI-----ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPN 89 (149)
T ss_dssp GGGCSEEECTTCBCBT-TBCCSCCTTCTTCCEEECTTSCCCCC-----TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTT
T ss_pred CccCeEEEccCCcCCh-hHHHHHHhhcCCCcEEECcCCCCCCc-----hhhhcCCCCCEEECCCCcccchHHHHhhhCCC
Confidence 3578888888887731 13466778899999999999865322 558899999999999 5666 7777888999
Q ss_pred CCeEecCCCCCccccc--hhhcCCCCCcEeeccCcccccccch----hhhhccccceeecc
Q 001993 627 LRYLALGENPWIKELP--EALCELCNLQTLDVSLCHYLKRLPE----RIGQLINLRHLMNS 681 (985)
Q Consensus 627 Lr~L~L~~~~~i~~lP--~~i~~L~~L~~L~l~~~~~l~~lP~----~i~~L~~L~~L~l~ 681 (985)
|++|++++|. +..+| ..++.+++|++|++++|. +..+|. .+..+++|++|+++
T Consensus 90 L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 90 LTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCC
Confidence 9999999999 88875 789999999999999998 777775 68899999999886
No 137
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.88 E-value=3.7e-09 Score=108.26 Aligned_cols=130 Identities=14% Similarity=0.133 Sum_probs=105.9
Q ss_pred CCCeEEEEEEcCCCCCccCCCccccCCCCceEEEccCcCCcchhhhHHHhhccCCcceeecCC--CCCCCCc-ccccCCC
Q 001993 550 SWKARHLMITGETRSEMVPFPSMVYDETKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL--PVGQIPK-GIKKLIH 626 (985)
Q Consensus 550 ~~~~r~l~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~--~~~~lp~-~i~~l~~ 626 (985)
+..++.+.+.++.+.... ....+..+++|+.|+++++.. ....+..|.++++|++|+++ .+..+|. .+..+.+
T Consensus 31 ~~~~~~L~L~~N~l~~~~-~~~~~~~l~~L~~L~L~~N~i---~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 106 (220)
T 2v70_A 31 PQYTAELRLNNNEFTVLE-ATGIFKKLPQLRKINFSNNKI---TDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLES 106 (220)
T ss_dssp CTTCSEEECCSSCCCEEC-CCCCGGGCTTCCEEECCSSCC---CEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSS
T ss_pred CCCCCEEEcCCCcCCccC-chhhhccCCCCCEEECCCCcC---CEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcC
Confidence 345678999888874322 123478899999999999874 33345568999999999999 6777765 4899999
Q ss_pred CCeEecCCCCCcccc-chhhcCCCCCcEeeccCccccccc-chhhhhccccceeecccccc
Q 001993 627 LRYLALGENPWIKEL-PEALCELCNLQTLDVSLCHYLKRL-PERIGQLINLRHLMNSKEEW 685 (985)
Q Consensus 627 Lr~L~L~~~~~i~~l-P~~i~~L~~L~~L~l~~~~~l~~l-P~~i~~L~~L~~L~l~~n~~ 685 (985)
|++|+|++|. +..+ |..+..+++|++|+|++|. +..+ |..+..+++|++|++++|.+
T Consensus 107 L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 107 LKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp CCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred CCEEECCCCc-CCeECHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCcCC
Confidence 9999999999 7776 6789999999999999998 6666 77889999999999998764
No 138
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.84 E-value=4.9e-09 Score=116.37 Aligned_cols=93 Identities=23% Similarity=0.241 Sum_probs=58.5
Q ss_pred eecCC--CCCCCCcccccCCCCCeEecCCCCCccccchh-hc-CCCCCcEeeccCcccccccc-hhhhhccccceeeccc
Q 001993 608 SIDGL--PVGQIPKGIKKLIHLRYLALGENPWIKELPEA-LC-ELCNLQTLDVSLCHYLKRLP-ERIGQLINLRHLMNSK 682 (985)
Q Consensus 608 ~L~l~--~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lP~~-i~-~L~~L~~L~l~~~~~l~~lP-~~i~~L~~L~~L~l~~ 682 (985)
+++++ .+..+|..+. ..+++|+|++|. +..+|.. +. .+.+|++|+|++|. +..+| ..+..+++|++|++++
T Consensus 22 ~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 22 ILSCSKQQLPNVPQSLP--SYTALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp EEECCSSCCSSCCSSCC--TTCSEEECCSSC-CCEECTTSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCS
T ss_pred EEEeCCCCcCccCccCC--CCCCEEECCCCC-CCccChhhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEEECCC
Confidence 44554 4566666554 347777777777 6666654 33 67777777777776 55555 3467777777777775
Q ss_pred ccccccccCCC-cCCCCCCCCccCce
Q 001993 683 EEWSRLSYMPR-GMERLTGLRTLGAF 707 (985)
Q Consensus 683 n~~~~l~~~p~-~i~~L~~L~~L~~~ 707 (985)
|.. ..+|. .+..+++|+.|++.
T Consensus 98 N~l---~~~~~~~~~~l~~L~~L~L~ 120 (361)
T 2xot_A 98 NHL---HTLDEFLFSDLQALEVLLLY 120 (361)
T ss_dssp SCC---CEECTTTTTTCTTCCEEECC
T ss_pred CcC---CcCCHHHhCCCcCCCEEECC
Confidence 543 34443 35666666666554
No 139
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.83 E-value=4.8e-09 Score=123.07 Aligned_cols=82 Identities=17% Similarity=0.199 Sum_probs=47.2
Q ss_pred hccCCcceeecCC--CCCCCCcccccCCCCCeEecCCCCCccccchhhcCCCCCcEeeccCccccccc--chhhhhcccc
Q 001993 600 FDRLTCLRSIDGL--PVGQIPKGIKKLIHLRYLALGENPWIKELPEALCELCNLQTLDVSLCHYLKRL--PERIGQLINL 675 (985)
Q Consensus 600 ~~~l~~Lr~L~l~--~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~l--P~~i~~L~~L 675 (985)
|.++++|+.|+++ .+..+|..++.+++|++|+|++|. +..+| .++.|++|++|+|++|. +..+ |..++.|++|
T Consensus 459 ~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp-~l~~l~~L~~L~Ls~N~-l~~~~~p~~l~~l~~L 535 (567)
T 1dce_A 459 LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA-LENVD-GVANLPRLQELLLCNNR-LQQSAAIQPLVSCPRL 535 (567)
T ss_dssp GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCCG-GGTTCSSCCEEECCSSC-CCSSSTTGGGGGCTTC
T ss_pred ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCC-CCCCc-ccCCCCCCcEEECCCCC-CCCCCCcHHHhcCCCC
Confidence 4555555555555 444555566666666666666665 55555 45666666666666655 4444 5556666666
Q ss_pred ceeeccccc
Q 001993 676 RHLMNSKEE 684 (985)
Q Consensus 676 ~~L~l~~n~ 684 (985)
+.|++++|.
T Consensus 536 ~~L~L~~N~ 544 (567)
T 1dce_A 536 VLLNLQGNS 544 (567)
T ss_dssp CEEECTTSG
T ss_pred CEEEecCCc
Confidence 666665443
No 140
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.80 E-value=7.5e-08 Score=102.52 Aligned_cols=175 Identities=8% Similarity=0.023 Sum_probs=108.1
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhc---cC-C-ceEEEE
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRN---HF-N-EKIWVC 253 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---~f-~-~~~wv~ 253 (985)
.+.|||+|.++|...|...- . .+....+.|+|++|+|||++|+.|++.-.... .. . ..++|+
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i----------~---~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~IN 87 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSL----------M---SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHID 87 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----------H---TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEE
T ss_pred ccCCHHHHHHHHHHHHHHHh----------c---CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEe
Confidence 48899999999998887532 0 24567899999999999999999998422111 11 1 356777
Q ss_pred eCCCCCHHHHHHHHHHHhcCCCCCCC-CHHHHHHHHHHH--hcCceEEEEecCCCCCCcccHHHHHhhhcC---CCCCcE
Q 001993 254 VSEPFDDIRIAKAILESLKGSATNAV-ESETVLKQLRES--IEGKKFFLVLDDVWTEEPQNWEQLLGCLRC---GSKESR 327 (985)
Q Consensus 254 ~s~~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~l~~~--l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~---~~~gs~ 327 (985)
+....+...++..|++++.+...... ..+.+...+... -.++++++|||+++... .-+.+...+.+ ......
T Consensus 88 c~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~ 165 (318)
T 3te6_A 88 ALELAGMDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLS 165 (318)
T ss_dssp TTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEE
T ss_pred ccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEE
Confidence 77888899999999999976532222 233333333321 24678999999996543 22334444321 111223
Q ss_pred EEEEcCchhhH-Hhhc-----CcccccccCCCCChHHHHHHHHHHhc
Q 001993 328 ILVTTRNEKVA-IAIG-----TTKFNIIPIELLSDEDCWSIFSQLAL 368 (985)
Q Consensus 328 iivTtR~~~v~-~~~~-----~~~~~~~~l~~L~~~e~~~Lf~~~~~ 368 (985)
||.++...+.. ..+. ......+.+.|++.++..+++.+++.
T Consensus 166 vI~i~n~~d~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 166 IICVGGHNVTIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp EEEECCSSCCCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHH
T ss_pred EEEEecCcccchhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHH
Confidence 44444433221 1111 11114689999999999999988764
No 141
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.80 E-value=1.8e-08 Score=110.33 Aligned_cols=184 Identities=17% Similarity=0.171 Sum_probs=117.4
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccC-C-ceEEEEeCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHF-N-EKIWVCVSE 256 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f-~-~~~wv~~s~ 256 (985)
+++|++..++.+..++..+. ...+.|+|++|+||||+|+.+++. ..... . ..+.+..++
T Consensus 26 ~~~g~~~~~~~l~~~l~~~~-----------------~~~~ll~G~~G~GKT~la~~l~~~--l~~~~~~~~~~~~~~~~ 86 (327)
T 1iqp_A 26 DIVGQEHIVKRLKHYVKTGS-----------------MPHLLFAGPPGVGKTTAALALARE--LFGENWRHNFLELNASD 86 (327)
T ss_dssp TCCSCHHHHHHHHHHHHHTC-----------------CCEEEEESCTTSSHHHHHHHHHHH--HHGGGHHHHEEEEETTC
T ss_pred HhhCCHHHHHHHHHHHHcCC-----------------CCeEEEECcCCCCHHHHHHHHHHH--hcCCcccCceEEeeccc
Confidence 68999999999999987432 334899999999999999999973 22211 1 133333332
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH--h-cCceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEEEEEcC
Q 001993 257 PFDDIRIAKAILESLKGSATNAVESETVLKQLRES--I-EGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRILVTTR 333 (985)
Q Consensus 257 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~--l-~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR 333 (985)
..... ..+..+ ...... + .+++.++|+||++......++.+...+.....+.++|+||.
T Consensus 87 ~~~~~-~~~~~~-----------------~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~ 148 (327)
T 1iqp_A 87 ERGIN-VIREKV-----------------KEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCN 148 (327)
T ss_dssp HHHHH-TTHHHH-----------------HHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEES
T ss_pred cCchH-HHHHHH-----------------HHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 11100 001111 111110 1 25788999999987666677778777776666788998887
Q ss_pred chhh-HHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHHHHHhhh
Q 001993 334 NEKV-AIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVKTLGSLL 405 (985)
Q Consensus 334 ~~~v-~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~L 405 (985)
...- ...+.. ....+.+.+++.++..+++...+...+. ..+ .+....|++.++|.|..+..+...+
T Consensus 149 ~~~~l~~~l~s-r~~~~~~~~l~~~~~~~~l~~~~~~~~~--~~~---~~~~~~l~~~~~g~~r~~~~~l~~~ 215 (327)
T 1iqp_A 149 YSSKIIEPIQS-RCAIFRFRPLRDEDIAKRLRYIAENEGL--ELT---EEGLQAILYIAEGDMRRAINILQAA 215 (327)
T ss_dssp CGGGSCHHHHH-TEEEEECCCCCHHHHHHHHHHHHHTTTC--EEC---HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CccccCHHHHh-hCcEEEecCCCHHHHHHHHHHHHHhcCC--CCC---HHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 6532 111111 1247899999999999999887654432 112 2457788899999998765554433
No 142
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.79 E-value=9.1e-09 Score=101.26 Aligned_cols=124 Identities=19% Similarity=0.169 Sum_probs=102.6
Q ss_pred CCCeEEEEEEcCCCCCccCCCccccCC-CCceEEEccCcCCcchhhhHHHhhccCCcceeecCC--CCCCCCccc-ccCC
Q 001993 550 SWKARHLMITGETRSEMVPFPSMVYDE-TKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL--PVGQIPKGI-KKLI 625 (985)
Q Consensus 550 ~~~~r~l~l~~~~~~~~~~~~~~~~~~-~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~--~~~~lp~~i-~~l~ 625 (985)
...++.+.+.++.+.. .+. +..+ ++|+.|+++++..... ..|.++++|++|+++ .+..+|..+ ..++
T Consensus 18 ~~~L~~L~l~~n~l~~---i~~-~~~~~~~L~~L~Ls~N~l~~~-----~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 88 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPV---IEN-LGATLDQFDAIDFSDNEIRKL-----DGFPLLRRLKTLLVNNNRICRIGEGLDQALP 88 (176)
T ss_dssp TTSCEEEECTTSCCCS---CCC-GGGGTTCCSEEECCSSCCCEE-----CCCCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred cCCceEEEeeCCCCch---hHH-hhhcCCCCCEEECCCCCCCcc-----cccccCCCCCEEECCCCcccccCcchhhcCC
Confidence 4578899999888743 333 3444 4999999999975322 358899999999999 677888665 8999
Q ss_pred CCCeEecCCCCCccccch--hhcCCCCCcEeeccCcccccccchh----hhhccccceeeccccc
Q 001993 626 HLRYLALGENPWIKELPE--ALCELCNLQTLDVSLCHYLKRLPER----IGQLINLRHLMNSKEE 684 (985)
Q Consensus 626 ~Lr~L~L~~~~~i~~lP~--~i~~L~~L~~L~l~~~~~l~~lP~~----i~~L~~L~~L~l~~n~ 684 (985)
+|++|++++|. +..+|. .+..+++|++|++++|. +..+|.. +..+++|+.|+++.|.
T Consensus 89 ~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 89 DLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp TCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 99999999999 899997 89999999999999998 7888875 8999999999998553
No 143
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.78 E-value=5.8e-09 Score=126.44 Aligned_cols=110 Identities=25% Similarity=0.273 Sum_probs=75.5
Q ss_pred CccccCCCCceEEEccCcCCcchhhhHHHhhccCCcceeecCC--CCCCCCcccccCCCCCeEecCCCCCccccchhhcC
Q 001993 570 PSMVYDETKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL--PVGQIPKGIKKLIHLRYLALGENPWIKELPEALCE 647 (985)
Q Consensus 570 ~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~--~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lP~~i~~ 647 (985)
+..+..++.|+.|+++++... . ++..+.++++|++|+|+ .+..+|..|++|.+|++|+|++|. +..+|..++.
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~---~-l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~ 291 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIF---N-ISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGS 291 (727)
T ss_dssp -----CCCCCCEEECTTSCCS---C-CCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGG
T ss_pred hhhhccCCCCcEEECCCCCCC---C-CChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChhhcC
Confidence 445566777777777777542 2 22224467777777777 566777777777778888887777 7777777777
Q ss_pred CCCCcEeeccCcccccccchhhhhccccceeecccccc
Q 001993 648 LCNLQTLDVSLCHYLKRLPERIGQLINLRHLMNSKEEW 685 (985)
Q Consensus 648 L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~n~~ 685 (985)
|.+|++|+|++|. +..+|..|+.|++|++|+|++|..
T Consensus 292 l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 292 CFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp GTTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCC
T ss_pred CCCCCEEECCCCC-CCccChhhhcCCCccEEeCCCCcc
Confidence 7778888887776 677777777777788777776644
No 144
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.75 E-value=1.4e-08 Score=111.29 Aligned_cols=125 Identities=17% Similarity=0.169 Sum_probs=86.2
Q ss_pred CCCCCCCeEEEeeccCCCCCCCChhhh-ccccccEEeEeccCCCCcCC--CCCCCCccceeeccCCCCceEeCCcccCCc
Q 001993 786 QPPSSLEKLGIYGYAGDTISPTSDWML-SLAKLRVLTLRFCNECECLP--PLGKLPCLETLVLEGMSSVKRLGNGFLGIA 862 (985)
Q Consensus 786 ~~~~~L~~L~l~~~~~~~~~~~p~~~~-~l~~L~~L~L~~~~~~~~l~--~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~ 862 (985)
..+.++..+.+.+...... ...+. .+++|+.|+|.+| .++.+| .+.+|++|+.|+|.+. ++.++...+
T Consensus 199 ~~~~~~~~l~~~~~l~~~~---~~~l~~~~~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF--- 269 (329)
T 3sb4_A 199 LQPRDINFLTIEGKLDNAD---FKLIRDYMPNLVSLDISKT-NATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVF--- 269 (329)
T ss_dssp CCGGGCSEEEEEECCCHHH---HHHHHHHCTTCCEEECTTB-CCCEECTTTTTTCTTCCEEECCTT--CCEECTTTT---
T ss_pred cCccccceEEEeeeecHHH---HHHHHHhcCCCeEEECCCC-CcceecHhhhhCCCCCCEEECCcc--cceehHHHh---
Confidence 3456778888877532211 11222 4789999999988 466666 4888999999999873 788877544
Q ss_pred hhhhhhhhhhhcccccccCCCCCccc-eeeccccccccccccccccCcccccccccceeecccccCCCCCC-CCCCCCCc
Q 001993 863 EDHQARADQAETASSIIRDTAFPRLE-TLEFLDMEKWEEWDDCEIAGGKTIMPRLRHLSICWSPELKALPD-YILGSTSL 940 (985)
Q Consensus 863 ~~~~~~~~~~~~~~~~~~~~~fp~L~-~L~l~~~~~L~~~~~~~~~~~~~~lp~L~~L~i~~c~~L~~lp~-~~~~l~~L 940 (985)
.++++|+ .|.+.+ +++.+.. .....+++|+.|.+.++ .++.++. .+.++++|
T Consensus 270 -------------------~~~~~L~~~l~l~~--~l~~I~~----~aF~~c~~L~~l~l~~n-~i~~I~~~aF~~~~~L 323 (329)
T 3sb4_A 270 -------------------SNCGRLAGTLELPA--SVTAIEF----GAFMGCDNLRYVLATGD-KITTLGDELFGNGVPS 323 (329)
T ss_dssp -------------------TTCTTCCEEEEECT--TCCEECT----TTTTTCTTEEEEEECSS-CCCEECTTTTCTTCCC
T ss_pred -------------------hCChhccEEEEEcc--cceEEch----hhhhCCccCCEEEeCCC-ccCccchhhhcCCcch
Confidence 2467888 888876 4444432 13456899999998664 6777764 57788899
Q ss_pred CeEEe
Q 001993 941 DKLLI 945 (985)
Q Consensus 941 ~~L~i 945 (985)
+.|..
T Consensus 324 ~~ly~ 328 (329)
T 3sb4_A 324 KLIYK 328 (329)
T ss_dssp CEEEC
T ss_pred hhhcc
Confidence 88763
No 145
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.71 E-value=2e-08 Score=100.32 Aligned_cols=101 Identities=23% Similarity=0.285 Sum_probs=51.7
Q ss_pred cceeecCC--CCCCCCcc--cccCCCCCeEecCCCCCcccc-chhhcCCCCCcEeeccCcccccccch-hhhhcccccee
Q 001993 605 CLRSIDGL--PVGQIPKG--IKKLIHLRYLALGENPWIKEL-PEALCELCNLQTLDVSLCHYLKRLPE-RIGQLINLRHL 678 (985)
Q Consensus 605 ~Lr~L~l~--~~~~lp~~--i~~l~~Lr~L~L~~~~~i~~l-P~~i~~L~~L~~L~l~~~~~l~~lP~-~i~~L~~L~~L 678 (985)
.|+.|+++ .+..+|.. ++.+++|++|+|++|. +..+ |..+..+++|++|+|++|. +..+|. .+..+++|++|
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L 107 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPNAFEGASHIQELQLGENK-IKEISNKMFLGLHQLKTL 107 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSCC-CCEECSSSSTTCTTCCEE
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCC-CCCcCHhHcCCcccCCEEECCCCc-CCccCHHHhcCCCCCCEE
Confidence 34444444 33444432 5555666666666665 4444 4455556666666666655 444433 35556666666
Q ss_pred ecccccccccccCCCcCCCCCCCCccCceEe
Q 001993 679 MNSKEEWSRLSYMPRGMERLTGLRTLGAFVA 709 (985)
Q Consensus 679 ~l~~n~~~~l~~~p~~i~~L~~L~~L~~~~~ 709 (985)
++++|... ...|..++.+++|+.|++..+
T Consensus 108 ~L~~N~l~--~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 108 NLYDNQIS--CVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp ECCSSCCC--EECTTSSTTCTTCCEEECTTC
T ss_pred ECCCCcCC--eeCHHHhhcCCCCCEEEeCCC
Confidence 66544332 122445555566665555443
No 146
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.71 E-value=9.2e-10 Score=110.81 Aligned_cols=80 Identities=20% Similarity=0.277 Sum_probs=46.4
Q ss_pred hccCCcceeecCC---------CCCCCCcccccCCCCCeEecCCCCCccccchhhcCCCCCcEeeccCcccccccchhhh
Q 001993 600 FDRLTCLRSIDGL---------PVGQIPKGIKKLIHLRYLALGENPWIKELPEALCELCNLQTLDVSLCHYLKRLPERIG 670 (985)
Q Consensus 600 ~~~l~~Lr~L~l~---------~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lP~~i~ 670 (985)
+.....+..++++ .+..+|..++.+++|++|++++|. +..+| .+..+++|++|++++|. +..+|..+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~-l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNN-IEKIS-SLSGMENLRILSLGRNL-IKKIENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEE-ESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCC-Ccccc-ccccCCCCCEEECCCCC-cccccchhh
Confidence 4445555555544 233334456666666666666665 55566 56666666666666665 556665555
Q ss_pred hccccceeeccc
Q 001993 671 QLINLRHLMNSK 682 (985)
Q Consensus 671 ~L~~L~~L~l~~ 682 (985)
.+++|++|++++
T Consensus 91 ~~~~L~~L~L~~ 102 (198)
T 1ds9_A 91 VADTLEELWISY 102 (198)
T ss_dssp HHHHCSEEEEEE
T ss_pred cCCcCCEEECcC
Confidence 566666666653
No 147
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.71 E-value=2.5e-08 Score=110.65 Aligned_cols=128 Identities=22% Similarity=0.204 Sum_probs=89.2
Q ss_pred CCceEEEccCcCCcchhhhHHHhhc-cCCcceeecCC--CCCCCC-cccccCCCCCeEecCCCCCccccch-hhcCCCCC
Q 001993 577 TKLRSLVLDQRLSFKPRIALSKLFD-RLTCLRSIDGL--PVGQIP-KGIKKLIHLRYLALGENPWIKELPE-ALCELCNL 651 (985)
Q Consensus 577 ~~Lr~L~l~~~~~~~~~~~~~~~~~-~l~~Lr~L~l~--~~~~lp-~~i~~l~~Lr~L~L~~~~~i~~lP~-~i~~L~~L 651 (985)
+.++.|+++++.. ....+..|. ++++|+.|+++ .+..++ ..+..+.+|++|+|++|. +..+|. .+..+.+|
T Consensus 39 ~~l~~L~Ls~N~l---~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L 114 (361)
T 2xot_A 39 SYTALLDLSHNNL---SRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH-LHTLDEFLFSDLQAL 114 (361)
T ss_dssp TTCSEEECCSSCC---CEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTC
T ss_pred CCCCEEECCCCCC---CccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc-CCcCCHHHhCCCcCC
Confidence 4577888888764 232344455 78888888887 566665 457888888888888887 777765 47788888
Q ss_pred cEeeccCccccccc-chhhhhccccceeecccccccccccCCCcC----CCCCCCCccCceEecCC
Q 001993 652 QTLDVSLCHYLKRL-PERIGQLINLRHLMNSKEEWSRLSYMPRGM----ERLTGLRTLGAFVASGG 712 (985)
Q Consensus 652 ~~L~l~~~~~l~~l-P~~i~~L~~L~~L~l~~n~~~~l~~~p~~i----~~L~~L~~L~~~~~~~~ 712 (985)
++|+|++|. +..+ |..+..+++|++|++++|.. ..+|..+ ..+++|+.|++..+...
T Consensus 115 ~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N~l---~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 115 EVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQI---SRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp CEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCC---CSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CEEECCCCc-ccEECHHHhCCcccCCEEECCCCcC---CeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 888888887 5544 56678888888888886544 4566553 56788888877655444
No 148
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.68 E-value=2.5e-08 Score=99.63 Aligned_cols=123 Identities=24% Similarity=0.290 Sum_probs=85.9
Q ss_pred EEEEEEcCCCCCccCCCccccCCCCceEEEccCcCCcchhhhHH-HhhccCCcceeecCC--CCCCC-CcccccCCCCCe
Q 001993 554 RHLMITGETRSEMVPFPSMVYDETKLRSLVLDQRLSFKPRIALS-KLFDRLTCLRSIDGL--PVGQI-PKGIKKLIHLRY 629 (985)
Q Consensus 554 r~l~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~-~~~~~l~~Lr~L~l~--~~~~l-p~~i~~l~~Lr~ 629 (985)
+.+.+.++.+ ..+|..+. .+++.|.+.++.. ....+ ..|.++++|++|+++ .+..+ |..+..+.+|++
T Consensus 11 ~~l~~s~~~l---~~ip~~~~--~~l~~L~l~~n~i---~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 82 (192)
T 1w8a_A 11 TTVDCTGRGL---KEIPRDIP--LHTTELLLNDNEL---GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQE 82 (192)
T ss_dssp TEEECTTSCC---SSCCSCCC--TTCSEEECCSCCC---CSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCE
T ss_pred CEEEcCCCCc---CcCccCCC--CCCCEEECCCCcC---CccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCE
Confidence 3455555555 22344333 3788888888764 22222 247788888888888 56665 667888888888
Q ss_pred EecCCCCCccccch-hhcCCCCCcEeeccCcccccccchhhhhccccceeecccccc
Q 001993 630 LALGENPWIKELPE-ALCELCNLQTLDVSLCHYLKRLPERIGQLINLRHLMNSKEEW 685 (985)
Q Consensus 630 L~L~~~~~i~~lP~-~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~n~~ 685 (985)
|+|++|. +..+|. .+..+++|++|+|++|......|..+..+++|++|++++|..
T Consensus 83 L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 83 LQLGENK-IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp EECCSCC-CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred EECCCCc-CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 8888888 776655 477888888888888883334466778888888888887654
No 149
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.68 E-value=5.3e-08 Score=97.19 Aligned_cols=100 Identities=24% Similarity=0.329 Sum_probs=54.9
Q ss_pred cceeecCC--CCCCCCcccccCCCCCeEecCCCCCccccch-hhcCCCCCcEeeccCcccccccch-hhhhccccceeec
Q 001993 605 CLRSIDGL--PVGQIPKGIKKLIHLRYLALGENPWIKELPE-ALCELCNLQTLDVSLCHYLKRLPE-RIGQLINLRHLMN 680 (985)
Q Consensus 605 ~Lr~L~l~--~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lP~-~i~~L~~L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l 680 (985)
.|+.|+++ .+..+|..+..+.+|++|+|++|. +..+|. .+..+++|++|+|++|. +..+|. .+..+++|++|++
T Consensus 32 ~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 32 DVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMTQLLTLILSYNR-LRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCchhHHHhhcccCCCEEECCCCc-CCEeCHhHccCCCCCCEEECCCCc-cCEeCHHHhCCCCCCCEEEC
Confidence 44444544 344555556666666666666665 555543 35666666666666665 444443 4556666666666
Q ss_pred ccccccccccCCCc-CCCCCCCCccCceEe
Q 001993 681 SKEEWSRLSYMPRG-MERLTGLRTLGAFVA 709 (985)
Q Consensus 681 ~~n~~~~l~~~p~~-i~~L~~L~~L~~~~~ 709 (985)
++|.. ..+|.+ +..+++|+.|++..+
T Consensus 110 ~~N~l---~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 110 HGNDI---SVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp CSSCC---CBCCTTTTTTCTTCCEEECCSS
T ss_pred CCCCC---CeeChhhhhcCccccEEEeCCC
Confidence 64433 344443 555666666655443
No 150
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.65 E-value=1.8e-07 Score=104.36 Aligned_cols=195 Identities=15% Similarity=0.252 Sum_probs=115.4
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
+++|++..++.+..++..+. ....+.|+|++|+||||+|+.+++.......+.. ..+
T Consensus 17 ~~vg~~~~~~~L~~~l~~~~----------------~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~-------~~~ 73 (373)
T 1jr3_A 17 DVVGQEHVLTALANGLSLGR----------------IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA-------TPC 73 (373)
T ss_dssp TSCSCHHHHHHHHHHHHHTC----------------CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCS-------SCC
T ss_pred hccCcHHHHHHHHHHHHhCC----------------CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCC-------CCC
Confidence 69999999999999987443 2347899999999999999999873211110000 000
Q ss_pred CHHHHHHHHHHH-------hcCCC-CCCCCHHHHHHHHHHH-hcCceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEEE
Q 001993 259 DDIRIAKAILES-------LKGSA-TNAVESETVLKQLRES-IEGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRIL 329 (985)
Q Consensus 259 ~~~~~~~~i~~~-------l~~~~-~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii 329 (985)
........+... +.... ....+...+...+... ..+++.++|+||++......++.+...+.....+..+|
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~I 153 (373)
T 1jr3_A 74 GVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFL 153 (373)
T ss_dssp SSSHHHHHHHTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEE
T ss_pred cccHHHHHHhccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEE
Confidence 000001111100 00000 1111222222221110 13567899999997766667777888777666677777
Q ss_pred EEcCchh-hHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHHHHH
Q 001993 330 VTTRNEK-VAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVKTLG 402 (985)
Q Consensus 330 vTtR~~~-v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 402 (985)
++|.... +...+.. ....+++.+++.++..+++.+.+...+.. .. .+....|++.++|.|..+..+.
T Consensus 154 l~~~~~~~l~~~l~s-r~~~i~~~~l~~~~~~~~l~~~~~~~~~~--~~---~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 154 LATTDPQKLPVTILS-RCLQFHLKALDVEQIRHQLEHILNEEHIA--HE---PRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp EEESCGGGSCHHHHT-TSEEEECCCCCHHHHHHHHHHHHHHHTCC--BC---HHHHHHHHHHSSSCHHHHHHHH
T ss_pred EEeCChHhCcHHHHh-heeEeeCCCCCHHHHHHHHHHHHHHcCCC--CC---HHHHHHHHHHCCCCHHHHHHHH
Confidence 7776443 2222111 12578999999999999998765332211 11 2457789999999999776654
No 151
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.65 E-value=5.4e-08 Score=95.31 Aligned_cols=99 Identities=24% Similarity=0.379 Sum_probs=70.7
Q ss_pred eeecCC--CCCCCCcccccCCCCCeEecCCCCCcccc-chhhcCCCCCcEeeccCcccccccchhh-hhccccceeeccc
Q 001993 607 RSIDGL--PVGQIPKGIKKLIHLRYLALGENPWIKEL-PEALCELCNLQTLDVSLCHYLKRLPERI-GQLINLRHLMNSK 682 (985)
Q Consensus 607 r~L~l~--~~~~lp~~i~~l~~Lr~L~L~~~~~i~~l-P~~i~~L~~L~~L~l~~~~~l~~lP~~i-~~L~~L~~L~l~~ 682 (985)
+.++++ .+..+|..+. .+|++|+|++|. +..+ |..+..+++|++|+|++|. +..+|..+ ..+++|++|++++
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQ-ITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCC-ccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECCC
Confidence 345555 5667777664 778888888887 6666 5567788888888888887 77777654 6788888888886
Q ss_pred ccccccccCCCc-CCCCCCCCccCceEecCC
Q 001993 683 EEWSRLSYMPRG-MERLTGLRTLGAFVASGG 712 (985)
Q Consensus 683 n~~~~l~~~p~~-i~~L~~L~~L~~~~~~~~ 712 (985)
|.. ..+|.. ++.+++|+.|++..+...
T Consensus 91 N~l---~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 91 NHL---KSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SCC---CCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred Ccc---ceeCHHHhccccCCCEEEeCCCCcc
Confidence 544 456655 777888888877655444
No 152
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.64 E-value=5.2e-08 Score=97.25 Aligned_cols=103 Identities=20% Similarity=0.269 Sum_probs=83.4
Q ss_pred CCceEEEccCcCCcchhhhHHHhhccCCcceeecCC--CCCCCC-cccccCCCCCeEecCCCCCccccch-hhcCCCCCc
Q 001993 577 TKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL--PVGQIP-KGIKKLIHLRYLALGENPWIKELPE-ALCELCNLQ 652 (985)
Q Consensus 577 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~--~~~~lp-~~i~~l~~Lr~L~L~~~~~i~~lP~-~i~~L~~L~ 652 (985)
++|+.|.++++... . ++..|.++++|+.|+++ .+..++ ..+..+.+|++|+|++|. +..+|. .+..+++|+
T Consensus 31 ~~l~~L~L~~n~i~---~-ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~ 105 (193)
T 2wfh_A 31 RDVTELYLDGNQFT---L-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR-LRCIPPRTFDGLKSLR 105 (193)
T ss_dssp TTCCEEECCSSCCC---S-CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCC
T ss_pred CCCCEEECCCCcCc---h-hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc-cCEeCHHHhCCCCCCC
Confidence 58999999988642 2 34568889999999998 666665 458899999999999998 777765 688899999
Q ss_pred EeeccCcccccccchh-hhhccccceeecccccc
Q 001993 653 TLDVSLCHYLKRLPER-IGQLINLRHLMNSKEEW 685 (985)
Q Consensus 653 ~L~l~~~~~l~~lP~~-i~~L~~L~~L~l~~n~~ 685 (985)
+|+|++|. +..+|.. +..+++|++|++++|.+
T Consensus 106 ~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 106 LLSLHGND-ISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp EEECCSSC-CCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred EEECCCCC-CCeeChhhhhcCccccEEEeCCCCe
Confidence 99999988 7777764 67899999999987754
No 153
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.64 E-value=7e-08 Score=94.97 Aligned_cols=101 Identities=25% Similarity=0.410 Sum_probs=57.5
Q ss_pred cceeecCC--CCCCCCc-ccccCCCCCeEecCCCCCccccchh-hcCCCCCcEeeccCcccccccchh-hhhccccceee
Q 001993 605 CLRSIDGL--PVGQIPK-GIKKLIHLRYLALGENPWIKELPEA-LCELCNLQTLDVSLCHYLKRLPER-IGQLINLRHLM 679 (985)
Q Consensus 605 ~Lr~L~l~--~~~~lp~-~i~~l~~Lr~L~L~~~~~i~~lP~~-i~~L~~L~~L~l~~~~~l~~lP~~-i~~L~~L~~L~ 679 (985)
.|+.|+++ .+..+|. .++.+.+|++|++++|. +..+|.. +..+++|++|++++|. +..+|.. +..+++|++|+
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTILYLHENK-LQSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEE
T ss_pred CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCc-ceEeChhHccCCCccCEEECCCCC-ccccCHHHhhCCcccCEEE
Confidence 44444444 3334433 34566666666666666 6665543 4666667777776666 5555543 45666677777
Q ss_pred cccccccccccCCCc-CCCCCCCCccCceEec
Q 001993 680 NSKEEWSRLSYMPRG-MERLTGLRTLGAFVAS 710 (985)
Q Consensus 680 l~~n~~~~l~~~p~~-i~~L~~L~~L~~~~~~ 710 (985)
+++|.. ..+|.. +..+++|+.|++..+.
T Consensus 107 l~~N~l---~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 107 LDTNQL---KSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CCSSCC---SCCCTTTTTTCTTCCEEECCSSC
T ss_pred CcCCcc---eEeCHHHhcCCcccCEEEecCCC
Confidence 665433 345544 3556666666665443
No 154
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.62 E-value=9.6e-10 Score=110.69 Aligned_cols=108 Identities=22% Similarity=0.261 Sum_probs=86.7
Q ss_pred HHHhhccCCcceeecCC--CCCCCCcccccCCCCCeEecCCCCCccccchhhcCCCCCcEeeccCcccccccchhhhhcc
Q 001993 596 LSKLFDRLTCLRSIDGL--PVGQIPKGIKKLIHLRYLALGENPWIKELPEALCELCNLQTLDVSLCHYLKRLPERIGQLI 673 (985)
Q Consensus 596 ~~~~~~~l~~Lr~L~l~--~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~ 673 (985)
++..|..+++|++|+++ .+..+| .+..+++|++|++++|. +..+|..+..+++|++|++++|. +..+| .+..++
T Consensus 40 l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N~-l~~l~-~~~~l~ 115 (198)
T 1ds9_A 40 MDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQ-IASLS-GIEKLV 115 (198)
T ss_dssp CHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEEE-CCCHH-HHHHHH
T ss_pred hhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCCc-CCcCC-ccccCC
Confidence 34467888899999988 566677 88899999999999998 88899888888999999999987 77787 688899
Q ss_pred ccceeecccccccccccCCC--cCCCCCCCCccCceEec
Q 001993 674 NLRHLMNSKEEWSRLSYMPR--GMERLTGLRTLGAFVAS 710 (985)
Q Consensus 674 ~L~~L~l~~n~~~~l~~~p~--~i~~L~~L~~L~~~~~~ 710 (985)
+|++|++++|.. ..+|. .+..+++|++|++..+.
T Consensus 116 ~L~~L~l~~N~i---~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 116 NLRVLYMSNNKI---TNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp HSSEEEESEEEC---CCHHHHHHHTTTTTCSEEEECSCH
T ss_pred CCCEEECCCCcC---CchhHHHHHhcCCCCCEEEecCCc
Confidence 999999986544 33332 57788888888876543
No 155
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.61 E-value=8e-08 Score=93.71 Aligned_cols=101 Identities=25% Similarity=0.370 Sum_probs=75.9
Q ss_pred ceeecCC--CCCCCCcccccCCCCCeEecCCCCCcccc-chhhcCCCCCcEeeccCcccccccchh-hhhccccceeecc
Q 001993 606 LRSIDGL--PVGQIPKGIKKLIHLRYLALGENPWIKEL-PEALCELCNLQTLDVSLCHYLKRLPER-IGQLINLRHLMNS 681 (985)
Q Consensus 606 Lr~L~l~--~~~~lp~~i~~l~~Lr~L~L~~~~~i~~l-P~~i~~L~~L~~L~l~~~~~l~~lP~~-i~~L~~L~~L~l~ 681 (985)
.+.++++ .+..+|..+. .+|++|+|++|. +..+ |..+..+++|++|+|++|. +..+|.. +..+++|++|+++
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQ-ITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCc-CCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCCCEEECC
Confidence 3456666 5677777664 788889998888 7777 5568888999999999887 7777765 4788899999998
Q ss_pred cccccccccCCCc-CCCCCCCCccCceEecCCC
Q 001993 682 KEEWSRLSYMPRG-MERLTGLRTLGAFVASGGK 713 (985)
Q Consensus 682 ~n~~~~l~~~p~~-i~~L~~L~~L~~~~~~~~~ 713 (985)
+|.. ..+|.. ++.+++|+.|++..+....
T Consensus 87 ~N~l---~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 87 DNQL---KSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp SSCC---CCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred CCcc---CEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 6644 556654 7888888888887665443
No 156
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.55 E-value=2.2e-07 Score=101.13 Aligned_cols=183 Identities=13% Similarity=0.111 Sum_probs=113.6
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCC-ceEEEEeCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFN-EKIWVCVSEP 257 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~s~~ 257 (985)
+++|++..++.+.+++..+ ..+.+.|+|++|+|||++|+.+++.- ....+. ..+.++.+..
T Consensus 18 ~~~g~~~~~~~l~~~l~~~-----------------~~~~~ll~G~~G~GKt~la~~l~~~l-~~~~~~~~~~~~~~~~~ 79 (319)
T 2chq_A 18 EVVGQDEVIQRLKGYVERK-----------------NIPHLLFSGPPGTGKTATAIALARDL-FGENWRDNFIEMNASDE 79 (319)
T ss_dssp GSCSCHHHHHHHHTTTTTT-----------------CCCCEEEESSSSSSHHHHHHHHHHHH-HTTCHHHHCEEEETTST
T ss_pred HHhCCHHHHHHHHHHHhCC-----------------CCCeEEEECcCCcCHHHHHHHHHHHh-cCCcccCCeEEEeCccc
Confidence 6899999999998887632 22238999999999999999998731 111111 1233443331
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH--h-cCceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEEEEEcCc
Q 001993 258 FDDIRIAKAILESLKGSATNAVESETVLKQLRES--I-EGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRILVTTRN 334 (985)
Q Consensus 258 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~--l-~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~ 334 (985)
.. ..........+... + .+++.++|+|+++.......+.+...+.....+.++|+||..
T Consensus 80 ~~------------------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~ 141 (319)
T 2chq_A 80 RG------------------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNY 141 (319)
T ss_dssp TC------------------TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESC
T ss_pred cC------------------hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence 11 01111111111111 1 256889999999765555566677777665667788888765
Q ss_pred hh-hHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHHHHHh
Q 001993 335 EK-VAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVKTLGS 403 (985)
Q Consensus 335 ~~-v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~ 403 (985)
.. +...+.. ....+.+.+++.++..+++...+...+.. .+ .+....+++.++|.+..+.....
T Consensus 142 ~~~l~~~l~s-r~~~i~~~~~~~~~~~~~l~~~~~~~~~~--i~---~~~l~~l~~~~~G~~r~~~~~l~ 205 (319)
T 2chq_A 142 VSRIIEPIQS-RCAVFRFKPVPKEAMKKRLLEICEKEGVK--IT---EDGLEALIYISGGDFRKAINALQ 205 (319)
T ss_dssp GGGSCHHHHT-TCEEEECCCCCHHHHHHHHHHHHHTTCCC--BC---HHHHHHHHHTTTTCHHHHHHHHH
T ss_pred hhhcchHHHh-hCeEEEecCCCHHHHHHHHHHHHHHcCCC--CC---HHHHHHHHHHcCCCHHHHHHHHH
Confidence 43 2222111 12578999999999999998876544321 11 24567888999999986654433
No 157
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.49 E-value=1e-06 Score=97.32 Aligned_cols=195 Identities=11% Similarity=0.068 Sum_probs=115.3
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCC-ceEEEEeCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFN-EKIWVCVSEP 257 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~s~~ 257 (985)
+++|++..++.+..++..+. ...+.|+|++|+||||+|+.+++.......+. ..+.++.+..
T Consensus 38 ~i~g~~~~~~~l~~~l~~~~-----------------~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 100 (353)
T 1sxj_D 38 EVTAQDHAVTVLKKTLKSAN-----------------LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDE 100 (353)
T ss_dssp TCCSCCTTHHHHHHHTTCTT-----------------CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSC
T ss_pred HhhCCHHHHHHHHHHHhcCC-----------------CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccc
Confidence 68999999999999987432 22389999999999999999988421111122 2333444432
Q ss_pred CCHHHHHHHHHHHhcCC-CCCCCCHHHHHHHHHHHhcCceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEEEEEcCchh
Q 001993 258 FDDIRIAKAILESLKGS-ATNAVESETVLKQLRESIEGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRILVTTRNEK 336 (985)
Q Consensus 258 ~~~~~~~~~i~~~l~~~-~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~ 336 (985)
..... +.+.+...... ....... .....-.+++-+|++|++........+.+...+.......++|++|....
T Consensus 101 ~~~~~-~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~ 174 (353)
T 1sxj_D 101 RGISI-VREKVKNFARLTVSKPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVT 174 (353)
T ss_dssp CCHHH-HTTHHHHHHHSCCCCCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred cchHH-HHHHHHHHhhhcccccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchh
Confidence 23222 22222222111 1010000 00011124567999999976655556667777765555667777775443
Q ss_pred -hHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHHHHH
Q 001993 337 -VAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVKTLG 402 (985)
Q Consensus 337 -v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 402 (985)
+...+.. ....+.+.+++.++....+...+...+.. .+ .+....|++.++|.|-.+..+.
T Consensus 175 ~l~~~l~s-R~~~i~~~~~~~~~~~~~l~~~~~~~~~~--i~---~~~l~~l~~~~~G~~r~~~~~l 235 (353)
T 1sxj_D 175 RIIDPLAS-QCSKFRFKALDASNAIDRLRFISEQENVK--CD---DGVLERILDISAGDLRRGITLL 235 (353)
T ss_dssp GSCHHHHH-HSEEEECCCCCHHHHHHHHHHHHHTTTCC--CC---HHHHHHHHHHTSSCHHHHHHHH
T ss_pred hCcchhhc-cCceEEeCCCCHHHHHHHHHHHHHHhCCC--CC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 2111111 12478899999999999998876443221 11 3457889999999998655443
No 158
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.49 E-value=2.6e-07 Score=100.95 Aligned_cols=284 Identities=13% Similarity=0.058 Sum_probs=155.7
Q ss_pred CCCceEEEccCcCCcchhhhHHHhhcc-CCcceeecCC--CCCCCCcccccCCCCCeEecCCCCCccccch-hhcC----
Q 001993 576 ETKLRSLVLDQRLSFKPRIALSKLFDR-LTCLRSIDGL--PVGQIPKGIKKLIHLRYLALGENPWIKELPE-ALCE---- 647 (985)
Q Consensus 576 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~-l~~Lr~L~l~--~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lP~-~i~~---- 647 (985)
+.+++.|.+.+... ...+. .+.. +++|++|||+ .+......-+.+..++++.+..+ .+|. .+..
T Consensus 24 ~~~l~~L~l~g~i~---~~~~~-~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~----~I~~~aF~~~~~~ 95 (329)
T 3sb4_A 24 ANSITHLTLTGKLN---AEDFR-HLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN----FVPAYAFSNVVNG 95 (329)
T ss_dssp HHHCSEEEEEEEEC---HHHHH-HHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT----EECTTTTEEEETT
T ss_pred hCceeEEEEecccc---HHHHH-HHHHhhccCeEEecCcceeEEecCcccccccccccccccc----ccCHHHhcccccc
Confidence 56788888887632 11122 2334 7889999998 33311111122223455555544 2333 4556
Q ss_pred ----CCCCcEeeccCcccccccch-hhhhccccceeecccccccccccCCC-cCCCCCCCCccCceEecC---CCccccc
Q 001993 648 ----LCNLQTLDVSLCHYLKRLPE-RIGQLINLRHLMNSKEEWSRLSYMPR-GMERLTGLRTLGAFVASG---GKSSKAC 718 (985)
Q Consensus 648 ----L~~L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~n~~~~l~~~p~-~i~~L~~L~~L~~~~~~~---~~~~~~~ 718 (985)
|.+|+.|+|.. . +..++. .+..+++|+.|++..|... .++. .+....++..+....... ...-...
T Consensus 96 ~~~g~~~L~~l~L~~-~-i~~I~~~aF~~~~~L~~l~l~~n~i~---~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~ 170 (329)
T 3sb4_A 96 VTKGKQTLEKVILSE-K-IKNIEDAAFKGCDNLKICQIRKKTAP---NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHF 170 (329)
T ss_dssp EEEECTTCCC-CBCT-T-CCEECTTTTTTCTTCCEEEBCCSSCC---EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTS
T ss_pred cccccCCCcEEECCc-c-ccchhHHHhhcCcccceEEcCCCCcc---ccchhhhcCCCceEEecCcchhhhhcccccccc
Confidence 89999999987 4 777765 4678899999998865442 3333 355554554443321000 0000000
Q ss_pred CCchhhhccccCcceeeecccccccCCCCcchhhhcccccccccccEEEEEcCCCCcchhHhhhcCCCCCCCCCeEEEee
Q 001993 719 SSLKSLNKLKHLEGSLTLRGLGNERDLGDDNDDEKVDLKSKMKLVDLHLRFDSTTKTKDHRVVLECLQPPSSLEKLGIYG 798 (985)
Q Consensus 719 ~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 798 (985)
.+..+..|. ..+.+..... ........-....++..+.+.... .......+. ..+++|+.|++.+
T Consensus 171 -~f~~~~~L~---~~i~~~~~~~------l~~~~~~~~~~~~~~~~l~~~~~l--~~~~~~~l~---~~~~~L~~l~L~~ 235 (329)
T 3sb4_A 171 -AFIEGEPLE---TTIQVGAMGK------LEDEIMKAGLQPRDINFLTIEGKL--DNADFKLIR---DYMPNLVSLDISK 235 (329)
T ss_dssp -CEEESCCCE---EEEEECTTCC------HHHHHHHTTCCGGGCSEEEEEECC--CHHHHHHHH---HHCTTCCEEECTT
T ss_pred -ccccccccc---eeEEecCCCc------HHHHHhhcccCccccceEEEeeee--cHHHHHHHH---HhcCCCeEEECCC
Confidence 122222221 1122211111 111111111234556666666543 011111111 1268999999999
Q ss_pred ccCCCCCCCChhhhccccccEEeEeccCCCCcCC--CCCCCCccc-eeeccCCCCceEeCCcccCCchhhhhhhhhhhcc
Q 001993 799 YAGDTISPTSDWMLSLAKLRVLTLRFCNECECLP--PLGKLPCLE-TLVLEGMSSVKRLGNGFLGIAEDHQARADQAETA 875 (985)
Q Consensus 799 ~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~--~l~~l~~L~-~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 875 (985)
|....+. +..+..+++|+.|+|.++ ++.++ .+.+|++|+ .|.|.+ .++.++...+
T Consensus 236 n~i~~I~--~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF---------------- 293 (329)
T 3sb4_A 236 TNATTIP--DFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAF---------------- 293 (329)
T ss_dssp BCCCEEC--TTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTT----------------
T ss_pred CCcceec--HhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchhhh----------------
Confidence 8877773 345778999999999987 66666 488999999 999987 5888876544
Q ss_pred cccccCCCCCccceeeccccccccccccccccCccccccccccee
Q 001993 876 SSIIRDTAFPRLETLEFLDMEKWEEWDDCEIAGGKTIMPRLRHLS 920 (985)
Q Consensus 876 ~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~lp~L~~L~ 920 (985)
.++++|+.|.+.+ ++++.+.. .....+++|+.|.
T Consensus 294 ------~~c~~L~~l~l~~-n~i~~I~~----~aF~~~~~L~~ly 327 (329)
T 3sb4_A 294 ------MGCDNLRYVLATG-DKITTLGD----ELFGNGVPSKLIY 327 (329)
T ss_dssp ------TTCTTEEEEEECS-SCCCEECT----TTTCTTCCCCEEE
T ss_pred ------hCCccCCEEEeCC-CccCccch----hhhcCCcchhhhc
Confidence 2567899998854 23444332 1233566777664
No 159
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.45 E-value=4.1e-07 Score=89.39 Aligned_cols=105 Identities=27% Similarity=0.451 Sum_probs=85.0
Q ss_pred CCCceEEEccCcCCcchhhhHHHhhccCCcceeecCC--CCCCCCcc-cccCCCCCeEecCCCCCccccchh-hcCCCCC
Q 001993 576 ETKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL--PVGQIPKG-IKKLIHLRYLALGENPWIKELPEA-LCELCNL 651 (985)
Q Consensus 576 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~--~~~~lp~~-i~~l~~Lr~L~L~~~~~i~~lP~~-i~~L~~L 651 (985)
.++|+.|.++++.. ....+..|.++++|++|+++ .+..+|.. +..+.+|++|++++|. +..+|.. +..+++|
T Consensus 27 ~~~l~~L~l~~n~l---~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L 102 (177)
T 2o6r_A 27 PSSATRLELESNKL---QSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK-LQSLPNGVFDKLTQL 102 (177)
T ss_dssp CTTCSEEECCSSCC---CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTC
T ss_pred CCCCcEEEeCCCcc---cEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC-ccccCHHHhhCCccc
Confidence 36899999998864 33344567889999999998 67777654 6889999999999998 8887765 6889999
Q ss_pred cEeeccCcccccccchhh-hhccccceeecccccc
Q 001993 652 QTLDVSLCHYLKRLPERI-GQLINLRHLMNSKEEW 685 (985)
Q Consensus 652 ~~L~l~~~~~l~~lP~~i-~~L~~L~~L~l~~n~~ 685 (985)
++|++++|. +..+|..+ ..+++|++|++++|..
T Consensus 103 ~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 103 KELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp CEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CEEECcCCc-ceEeCHHHhcCCcccCEEEecCCCe
Confidence 999999997 77888764 7799999999997654
No 160
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.44 E-value=2.2e-07 Score=92.62 Aligned_cols=149 Identities=18% Similarity=0.202 Sum_probs=82.7
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhc-------cCCceEE
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRN-------HFNEKIW 251 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-------~f~~~~w 251 (985)
.++||+++++++.+++.. .....+.|+|++|+|||++|+.+++. ... .....++
T Consensus 23 ~~~g~~~~~~~l~~~l~~-----------------~~~~~~ll~G~~G~GKT~l~~~~~~~--~~~~~~~~~~~~~~~~~ 83 (195)
T 1jbk_A 23 PVIGRDEEIRRTIQVLQR-----------------RTKNNPVLIGEPGVGKTAIVEGLAQR--IINGEVPEGLKGRRVLA 83 (195)
T ss_dssp CCCSCHHHHHHHHHHHTS-----------------SSSCEEEEECCTTSCHHHHHHHHHHH--HHHTCSCGGGTTCEEEE
T ss_pred ccccchHHHHHHHHHHhc-----------------CCCCceEEECCCCCCHHHHHHHHHHH--HHhCCCchhhcCCcEEE
Confidence 689999999999999863 23456789999999999999999873 221 1122344
Q ss_pred EEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh--cCceEEEEecCCCCCC--------cccHHHHHhhhcC
Q 001993 252 VCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESI--EGKKFFLVLDDVWTEE--------PQNWEQLLGCLRC 321 (985)
Q Consensus 252 v~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~--------~~~~~~l~~~l~~ 321 (985)
+.++. + ..+.. ...........+.+.+ .+++.+|||||++... ....+.+...+..
T Consensus 84 ~~~~~------~-------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~ 149 (195)
T 1jbk_A 84 LDMGA------L-------VAGAK-YRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR 149 (195)
T ss_dssp ECHHH------H-------HTTTC-SHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHT
T ss_pred eeHHH------H-------hccCC-ccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhcc
Confidence 43211 1 00000 0000111111121212 3568899999996431 1223334443332
Q ss_pred CCCCcEEEEEcCchhhHH------hhcCcccccccCCCCChHHHHHHH
Q 001993 322 GSKESRILVTTRNEKVAI------AIGTTKFNIIPIELLSDEDCWSIF 363 (985)
Q Consensus 322 ~~~gs~iivTtR~~~v~~------~~~~~~~~~~~l~~L~~~e~~~Lf 363 (985)
.+..+|.||....... .+.. ....+.+.+++.++..+++
T Consensus 150 --~~~~~i~~~~~~~~~~~~~~~~~l~~-r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 150 --GELHCVGATTLDEYRQYIEKDAALER-RFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp --TSCCEEEEECHHHHHHHTTTCHHHHT-TEEEEECCCCCHHHHHTTC
T ss_pred --CCeEEEEeCCHHHHHHHHhcCHHHHH-HhceeecCCCCHHHHHHHh
Confidence 2345777776554321 1111 1236788888888876543
No 161
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.43 E-value=6.7e-06 Score=90.06 Aligned_cols=180 Identities=16% Similarity=0.157 Sum_probs=108.4
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
+++|++..++++..++.... .. ......|.|+|++|+|||++|+.+++ ..... .+.++.+...
T Consensus 30 ~iiG~~~~~~~l~~~l~~~~----------~~--~~~~~~vll~G~~GtGKT~la~~ia~--~~~~~---~~~~~~~~~~ 92 (338)
T 3pfi_A 30 GYIGQESIKKNLNVFIAAAK----------KR--NECLDHILFSGPAGLGKTTLANIISY--EMSAN---IKTTAAPMIE 92 (338)
T ss_dssp GCCSCHHHHHHHHHHHHHHH----------HT--TSCCCCEEEECSTTSSHHHHHHHHHH--HTTCC---EEEEEGGGCC
T ss_pred HhCChHHHHHHHHHHHHHHH----------hc--CCCCCeEEEECcCCCCHHHHHHHHHH--HhCCC---eEEecchhcc
Confidence 79999999999998887431 00 12345689999999999999999987 33222 2233332211
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCCCcccHHHHHhhhcCCC---------------
Q 001993 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTEEPQNWEQLLGCLRCGS--------------- 323 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~--------------- 323 (985)
........+.. ..+..+|+||++..........+...+....
T Consensus 93 ---------------------~~~~~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~ 149 (338)
T 3pfi_A 93 ---------------------KSGDLAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIK 149 (338)
T ss_dssp ---------------------SHHHHHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCC
T ss_pred ---------------------chhHHHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCcccccee
Confidence 11111111111 2456799999997665555566666554322
Q ss_pred ---CCcEEEEEcCchh-hHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHH
Q 001993 324 ---KESRILVTTRNEK-VAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVK 399 (985)
Q Consensus 324 ---~gs~iivTtR~~~-v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 399 (985)
++..+|.||.... +...+...-...+.+.+++.++...++.+.+..... ..+ .+....|++.+.|.|-.+.
T Consensus 150 ~~~~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~--~~~---~~~~~~l~~~~~G~~r~l~ 224 (338)
T 3pfi_A 150 IDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNK--TCE---EKAALEIAKRSRSTPRIAL 224 (338)
T ss_dssp CCCCCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC--EEC---HHHHHHHHHTTTTCHHHHH
T ss_pred cCCCCeEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCC--CCC---HHHHHHHHHHHCcCHHHHH
Confidence 1245666665432 211111110157899999999999999887644321 111 3457788889999996555
Q ss_pred HHHh
Q 001993 400 TLGS 403 (985)
Q Consensus 400 ~~~~ 403 (985)
.+..
T Consensus 225 ~~l~ 228 (338)
T 3pfi_A 225 RLLK 228 (338)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 162
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.41 E-value=4.3e-07 Score=94.30 Aligned_cols=155 Identities=12% Similarity=0.105 Sum_probs=92.1
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcC
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEG 294 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 294 (985)
....+.|+|++|+||||+|+.+++. .......++|+++++..+. + .. .+ +.+ .
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~~~~~~----------~----------~~---~~-~~~-~ 103 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACAR--ANELERRSFYIPLGIHASI----------S----------TA---LL-EGL-E 103 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEGGGGGGS----------C----------GG---GG-TTG-G
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEHHHHHHH----------H----------HH---HH-Hhc-c
Confidence 3467899999999999999999983 3333345667766442110 0 00 00 011 4
Q ss_pred ceEEEEecCCCCCCccc--HHHHHhhhcCC-CCC-cEEEEEcCchh---------hHHhhcCcccccccCCCCChHHHHH
Q 001993 295 KKFFLVLDDVWTEEPQN--WEQLLGCLRCG-SKE-SRILVTTRNEK---------VAIAIGTTKFNIIPIELLSDEDCWS 361 (985)
Q Consensus 295 k~~LlVlDdv~~~~~~~--~~~l~~~l~~~-~~g-s~iivTtR~~~---------v~~~~~~~~~~~~~l~~L~~~e~~~ 361 (985)
++.+||+||++...... .+.+...+... ..+ .++|+||+... +...+... ..+.+.+++.++..+
T Consensus 104 ~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~--~~i~l~~~~~~~~~~ 181 (242)
T 3bos_A 104 QFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWG--LTYQLQPMMDDEKLA 181 (242)
T ss_dssp GSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHS--EEEECCCCCGGGHHH
T ss_pred CCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcC--ceEEeCCCCHHHHHH
Confidence 56799999996543322 33344443211 112 25777776432 11111111 578999999999999
Q ss_pred HHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHHHHHh
Q 001993 362 IFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVKTLGS 403 (985)
Q Consensus 362 Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~ 403 (985)
++...+...+. ..+ .+....|++.++|.+-.+..+..
T Consensus 182 ~l~~~~~~~~~--~~~---~~~~~~l~~~~~g~~r~l~~~l~ 218 (242)
T 3bos_A 182 ALQRRAAMRGL--QLP---EDVGRFLLNRMARDLRTLFDVLD 218 (242)
T ss_dssp HHHHHHHHTTC--CCC---HHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCC--CCC---HHHHHHHHHHccCCHHHHHHHHH
Confidence 99887643322 111 34567888899998876655443
No 163
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.40 E-value=4.4e-07 Score=88.78 Aligned_cols=80 Identities=24% Similarity=0.408 Sum_probs=61.5
Q ss_pred CcceeecCC--CCCCC-CcccccCCCCCeEecCCCCCccccchh-hcCCCCCcEeeccCcccccccchh-hhhcccccee
Q 001993 604 TCLRSIDGL--PVGQI-PKGIKKLIHLRYLALGENPWIKELPEA-LCELCNLQTLDVSLCHYLKRLPER-IGQLINLRHL 678 (985)
Q Consensus 604 ~~Lr~L~l~--~~~~l-p~~i~~l~~Lr~L~L~~~~~i~~lP~~-i~~L~~L~~L~l~~~~~l~~lP~~-i~~L~~L~~L 678 (985)
+.|++|+++ .+..+ |..+..+++|++|+|++|. +..+|.. +..+++|++|+|++|. +..+|.. +..+++|++|
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L 110 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLNDNH-LKSIPRGAFDNLKSLTHI 110 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCSEE
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECCCCc-cceeCHHHhccccCCCEE
Confidence 566677776 45555 5567888888888888887 8888775 4788888888888887 7777765 7788888888
Q ss_pred ecccccc
Q 001993 679 MNSKEEW 685 (985)
Q Consensus 679 ~l~~n~~ 685 (985)
++++|..
T Consensus 111 ~L~~N~~ 117 (174)
T 2r9u_A 111 YLYNNPW 117 (174)
T ss_dssp ECCSSCB
T ss_pred EeCCCCc
Confidence 8887654
No 164
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.39 E-value=4.3e-07 Score=88.50 Aligned_cols=80 Identities=24% Similarity=0.403 Sum_probs=63.5
Q ss_pred CcceeecCC--CCCCC-CcccccCCCCCeEecCCCCCccccchh-hcCCCCCcEeeccCcccccccchh-hhhcccccee
Q 001993 604 TCLRSIDGL--PVGQI-PKGIKKLIHLRYLALGENPWIKELPEA-LCELCNLQTLDVSLCHYLKRLPER-IGQLINLRHL 678 (985)
Q Consensus 604 ~~Lr~L~l~--~~~~l-p~~i~~l~~Lr~L~L~~~~~i~~lP~~-i~~L~~L~~L~l~~~~~l~~lP~~-i~~L~~L~~L 678 (985)
+.|++|+++ .+..+ |..+..+.+|++|+|++|. +..+|.. +..+++|++|+|++|. +..+|.. +..+++|++|
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L 107 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSLNDNQ-LKSIPRGAFDNLKSLTHI 107 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCCCEEECCCCc-cCEeCHHHhcCCCCCCEE
Confidence 567777777 55666 5568888999999999998 8888775 4789999999999987 7777764 7889999999
Q ss_pred ecccccc
Q 001993 679 MNSKEEW 685 (985)
Q Consensus 679 ~l~~n~~ 685 (985)
++++|..
T Consensus 108 ~L~~N~~ 114 (170)
T 3g39_A 108 WLLNNPW 114 (170)
T ss_dssp ECCSSCB
T ss_pred EeCCCCC
Confidence 9987754
No 165
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.30 E-value=6e-06 Score=92.26 Aligned_cols=224 Identities=11% Similarity=0.116 Sum_probs=114.8
Q ss_pred hhccCCcceeecCC-CCCCCCcc-cccCCCCCeEecCCCCCccccc-hhhcCCCCCcEeeccCcccccccchhhhhcccc
Q 001993 599 LFDRLTCLRSIDGL-PVGQIPKG-IKKLIHLRYLALGENPWIKELP-EALCELCNLQTLDVSLCHYLKRLPERIGQLINL 675 (985)
Q Consensus 599 ~~~~l~~Lr~L~l~-~~~~lp~~-i~~l~~Lr~L~L~~~~~i~~lP-~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L 675 (985)
.|.++ .|+.+.+. .+..++.. +.+ .+|+.+.+.. . +..++ ..+..|.+|+.+++..|. +..+|.......+|
T Consensus 131 aF~~~-~L~~i~l~~~i~~I~~~aF~~-~~L~~i~lp~-~-l~~I~~~aF~~c~~L~~l~l~~n~-l~~I~~~aF~~~~L 205 (401)
T 4fdw_A 131 AFRNS-QIAKVVLNEGLKSIGDMAFFN-STVQEIVFPS-T-LEQLKEDIFYYCYNLKKADLSKTK-ITKLPASTFVYAGI 205 (401)
T ss_dssp TTTTC-CCSEEECCTTCCEECTTTTTT-CCCCEEECCT-T-CCEECSSTTTTCTTCCEEECTTSC-CSEECTTTTTTCCC
T ss_pred hcccC-CccEEEeCCCccEECHHhcCC-CCceEEEeCC-C-ccEehHHHhhCcccCCeeecCCCc-ceEechhhEeeccc
Confidence 34443 46666665 45555432 333 3567777665 2 55554 346667777777776665 66666555445677
Q ss_pred ceeecccccccccccCCC-cCCCCCCCCccCceEecCCCcccccCCchhhhccccCcceeeec-ccccccCCCCcchhhh
Q 001993 676 RHLMNSKEEWSRLSYMPR-GMERLTGLRTLGAFVASGGKSSKACSSLKSLNKLKHLEGSLTLR-GLGNERDLGDDNDDEK 753 (985)
Q Consensus 676 ~~L~l~~n~~~~l~~~p~-~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~-~l~~~~~~~~~~~~~~ 753 (985)
+.+.+..+ +..++. .+.++++|+.+.+... .... +...+.. .+|+ .+.+. .+..+ ..
T Consensus 206 ~~l~lp~~----l~~I~~~aF~~~~~L~~l~l~~~-l~~I--~~~aF~~-~~L~----~i~lp~~i~~I---------~~ 264 (401)
T 4fdw_A 206 EEVLLPVT----LKEIGSQAFLKTSQLKTIEIPEN-VSTI--GQEAFRE-SGIT----TVKLPNGVTNI---------AS 264 (401)
T ss_dssp SEEECCTT----CCEECTTTTTTCTTCCCEECCTT-CCEE--CTTTTTT-CCCS----EEEEETTCCEE---------CT
T ss_pred CEEEeCCc----hheehhhHhhCCCCCCEEecCCC-ccCc--ccccccc-CCcc----EEEeCCCccEE---------Ch
Confidence 77766521 334433 3556666666554311 0000 1112222 2333 22221 11111 12
Q ss_pred cccccccccccEEEEEcCCCCcchhHhhhcCCCCCCCCCeEEEeeccCCCCCCCChhhhccccccEEeEeccCCCCcCC-
Q 001993 754 VDLKSKMKLVDLHLRFDSTTKTKDHRVVLECLQPPSSLEKLGIYGYAGDTISPTSDWMLSLAKLRVLTLRFCNECECLP- 832 (985)
Q Consensus 754 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~- 832 (985)
..|..|.+|+.+.+..+..........-...+..+.+|+.+.+... ...+. ...+.++.+|+.|.|..+ ++.++
T Consensus 265 ~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i~~I~--~~aF~~c~~L~~l~lp~~--l~~I~~ 339 (401)
T 4fdw_A 265 RAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-IRILG--QGLLGGNRKVTQLTIPAN--VTQINF 339 (401)
T ss_dssp TTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-CCEEC--TTTTTTCCSCCEEEECTT--CCEECT
T ss_pred hHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-eEEEh--hhhhcCCCCccEEEECcc--ccEEcH
Confidence 3466677777777765431100000111234566777888777632 33332 345557788888888554 44444
Q ss_pred -CCCCCCccceeeccCCCCceEeC
Q 001993 833 -PLGKLPCLETLVLEGMSSVKRLG 855 (985)
Q Consensus 833 -~l~~l~~L~~L~L~~~~~l~~l~ 855 (985)
.+.++ +|+.|.+.++. +..++
T Consensus 340 ~aF~~~-~L~~l~l~~n~-~~~l~ 361 (401)
T 4fdw_A 340 SAFNNT-GIKEVKVEGTT-PPQVF 361 (401)
T ss_dssp TSSSSS-CCCEEEECCSS-CCBCC
T ss_pred HhCCCC-CCCEEEEcCCC-Ccccc
Confidence 46677 88888887743 33443
No 166
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.29 E-value=1.6e-06 Score=95.76 Aligned_cols=195 Identities=14% Similarity=0.143 Sum_probs=108.7
Q ss_pred ceecchhhHHHHHHHH-hcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCc---------
Q 001993 179 EIRGRNHLQNKVASLL-MSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNE--------- 248 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L-~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~--------- 248 (985)
+++|.+...+.+.+++ ..+ .... +.|+|+.|+||||+|+.++.. ....-..
T Consensus 15 ~~vg~~~~~~~l~~~~~~~~----------------~~~~-~ll~Gp~G~GKTtl~~~la~~--l~~~~~g~i~~~~~~~ 75 (354)
T 1sxj_E 15 ALSHNEELTNFLKSLSDQPR----------------DLPH-LLLYGPNGTGKKTRCMALLES--IFGPGVYRLKIDVRQF 75 (354)
T ss_dssp GCCSCHHHHHHHHTTTTCTT----------------CCCC-EEEECSTTSSHHHHHHTHHHH--HSCTTCCC--------
T ss_pred HhcCCHHHHHHHHHHHhhCC----------------CCCe-EEEECCCCCCHHHHHHHHHHH--HcCCCCCeEEecceee
Confidence 6899999888888877 322 1223 899999999999999988762 1110000
Q ss_pred -----------------eEEEEeCCCC-CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCCCcc
Q 001993 249 -----------------KIWVCVSEPF-DDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTEEPQ 310 (985)
Q Consensus 249 -----------------~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~ 310 (985)
.+.+..+... ......++++..+.....- .... .+. .+.+++-++|+|++...+..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~-~ls-~l~~~~~vlilDE~~~L~~~ 149 (354)
T 1sxj_E 76 VTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQV----DFQD-SKD-GLAHRYKCVIINEANSLTKD 149 (354)
T ss_dssp ----------CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------------CCEEEEEECTTSSCHH
T ss_pred cccccccceeeeecccceEEecHhhcCCcchHHHHHHHHHHHHhccc----cccc-ccc-ccCCCCeEEEEeCccccCHH
Confidence 1111111100 0000122222222111000 0000 000 02346779999999876666
Q ss_pred cHHHHHhhhcCCCCCcEEEEEcCchh-hHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHH
Q 001993 311 NWEQLLGCLRCGSKESRILVTTRNEK-VAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVS 389 (985)
Q Consensus 311 ~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~ 389 (985)
..+.+...+.....+..+|++|.+.. +...+.. ....+++.+++.++..+.+.+.+...+. ..+. .+....|++
T Consensus 150 ~~~~L~~~le~~~~~~~~Il~t~~~~~l~~~l~s-R~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~--~~~l~~i~~ 224 (354)
T 1sxj_E 150 AQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKS-QCLLIRCPAPSDSEISTILSDVVTNERI--QLET--KDILKRIAQ 224 (354)
T ss_dssp HHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHT-TSEEEECCCCCHHHHHHHHHHHHHHHTC--EECC--SHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCEEEEEeCCHHHHHHHHHh-hceEEecCCcCHHHHHHHHHHHHHHcCC--CCCc--HHHHHHHHH
Confidence 66777777765555677888876543 2222211 1257899999999999999887643221 1110 245678889
Q ss_pred hcCCChhHHHHHHh
Q 001993 390 KCKGLPLAVKTLGS 403 (985)
Q Consensus 390 ~c~GlPLai~~~~~ 403 (985)
.++|.+-.+..+..
T Consensus 225 ~~~G~~r~a~~~l~ 238 (354)
T 1sxj_E 225 ASNGNLRVSLLMLE 238 (354)
T ss_dssp HHTTCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHH
Confidence 99998876654443
No 167
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.28 E-value=9.1e-06 Score=91.86 Aligned_cols=162 Identities=17% Similarity=0.151 Sum_probs=98.8
Q ss_pred CEEEEEEccCCchHHHHHHHHhcchhhhccCC--ceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc
Q 001993 216 PTIISITGMGGIGKTTLAKLIFNDNEVRNHFN--EKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIE 293 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~--~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 293 (985)
...+.|+|++|+||||||+.+++ .....+. .+++++.. .+...+...+... .. ..+.+.+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~--~l~~~~~~~~v~~v~~~------~~~~~~~~~~~~~-----~~----~~~~~~~~ 192 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYITSE------KFLNDLVDSMKEG-----KL----NEFREKYR 192 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHH--HHHHHCCSSCEEEEEHH------HHHHHHHHHHHTT-----CH----HHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEeeHH------HHHHHHHHHHHcc-----cH----HHHHHHhc
Confidence 56799999999999999999998 4444442 24555433 3344444444322 11 12333334
Q ss_pred CceEEEEecCCCCCCc--ccHHHHHhhhcC-CCCCcEEEEEcCchh---------hHHhhcCcccccccCCCCChHHHHH
Q 001993 294 GKKFFLVLDDVWTEEP--QNWEQLLGCLRC-GSKESRILVTTRNEK---------VAIAIGTTKFNIIPIELLSDEDCWS 361 (985)
Q Consensus 294 ~k~~LlVlDdv~~~~~--~~~~~l~~~l~~-~~~gs~iivTtR~~~---------v~~~~~~~~~~~~~l~~L~~~e~~~ 361 (985)
.++-+|++||++.... ...+.+...+.. ...|..||+||.... +...+... ..+.+.+++.++..+
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g--~~i~l~~p~~e~r~~ 270 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMG--LVAKLEPPDEETRKS 270 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSS--BCCBCCCCCHHHHHH
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCC--eEEEeCCCCHHHHHH
Confidence 3678999999965332 233344444421 234668888887632 22223322 478999999999999
Q ss_pred HHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHHHH
Q 001993 362 IFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVKTL 401 (985)
Q Consensus 362 Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 401 (985)
++.+.+...... .++ ++...|++.++|.+-.+..+
T Consensus 271 iL~~~~~~~~~~--i~~---e~l~~la~~~~gn~R~l~~~ 305 (440)
T 2z4s_A 271 IARKMLEIEHGE--LPE---EVLNFVAENVDDNLRRLRGA 305 (440)
T ss_dssp HHHHHHHHHTCC--CCT---THHHHHHHHCCSCHHHHHHH
T ss_pred HHHHHHHHcCCC--CCH---HHHHHHHHhcCCCHHHHHHH
Confidence 998876432211 111 34667888999988655433
No 168
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.22 E-value=2.5e-05 Score=86.70 Aligned_cols=198 Identities=16% Similarity=0.149 Sum_probs=108.8
Q ss_pred ceecchhhHHH---HHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEe-
Q 001993 179 EIRGRNHLQNK---VASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCV- 254 (985)
Q Consensus 179 ~~vGr~~~~~~---l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~- 254 (985)
+|+|++..++. +.+.+..+. ...+.+.|+|++|+|||++|+.+++. ...... .+.+..
T Consensus 45 ~ivG~~~~~~~l~~l~~~~~~~~---------------~~~~~vLl~GppGtGKT~la~~la~~--l~~~~~-~~~~~~~ 106 (368)
T 3uk6_A 45 GMVGQLAARRAAGVVLEMIREGK---------------IAGRAVLIAGQPGTGKTAIAMGMAQA--LGPDTP-FTAIAGS 106 (368)
T ss_dssp TEESCHHHHHHHHHHHHHHHTTC---------------CTTCEEEEEESTTSSHHHHHHHHHHH--HCSSCC-EEEEEGG
T ss_pred hccChHHHHHHHHHHHHHHHcCC---------------CCCCEEEEECCCCCCHHHHHHHHHHH--hcccCC-cccccch
Confidence 79999988766 455554332 22468999999999999999999983 332211 112221
Q ss_pred ---CCCCCHHHHHHHHHHHhcCCC------------------------------CCCCCHHHHHHHHHHHh-----cCc-
Q 001993 255 ---SEPFDDIRIAKAILESLKGSA------------------------------TNAVESETVLKQLRESI-----EGK- 295 (985)
Q Consensus 255 ---s~~~~~~~~~~~i~~~l~~~~------------------------------~~~~~~~~~~~~l~~~l-----~~k- 295 (985)
+........+........+.. ....-...+...+.+.. .++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~ 186 (368)
T 3uk6_A 107 EIFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKA 186 (368)
T ss_dssp GGSCSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC-
T ss_pred hhhhcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccc
Confidence 222334444444443321100 00000122222222211 233
Q ss_pred ---eEEEEecCCCCCCcccHHHHHhhhcCCCCCcEEEEEcCc-------------hhhHHhhcCcccccccCCCCChHHH
Q 001993 296 ---KFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRILVTTRN-------------EKVAIAIGTTKFNIIPIELLSDEDC 359 (985)
Q Consensus 296 ---~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~-------------~~v~~~~~~~~~~~~~l~~L~~~e~ 359 (985)
+.+|+||++........+.+...+...... .++++|.. ..+...+.. ....+.+.+++.++.
T Consensus 187 ~~~~~vl~IDEi~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s-R~~~i~~~~~~~~e~ 264 (368)
T 3uk6_A 187 EIIPGVLFIDEVHMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLD-RLLIVSTTPYSEKDT 264 (368)
T ss_dssp --CBCEEEEESGGGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHT-TEEEEEECCCCHHHH
T ss_pred cccCceEEEhhccccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHh-hccEEEecCCCHHHH
Confidence 459999999776666666677766554433 34444431 111111111 124579999999999
Q ss_pred HHHHHHHhcCCCCCcccchhHHHHHHHHHHhcC-CChhHHHHH
Q 001993 360 WSIFSQLALSRRLDIEESENFENIGRQIVSKCK-GLPLAVKTL 401 (985)
Q Consensus 360 ~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~-GlPLai~~~ 401 (985)
.+++...+...... .+ .+....|++.+. |.|-.+..+
T Consensus 265 ~~il~~~~~~~~~~--~~---~~~l~~l~~~~~~G~~r~~~~l 302 (368)
T 3uk6_A 265 KQILRIRCEEEDVE--MS---EDAYTVLTRIGLETSLRYAIQL 302 (368)
T ss_dssp HHHHHHHHHHTTCC--BC---HHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHcCCC--CC---HHHHHHHHHHhcCCCHHHHHHH
Confidence 99999876543221 11 245677888887 777655443
No 169
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.21 E-value=2.1e-05 Score=85.58 Aligned_cols=156 Identities=13% Similarity=0.122 Sum_probs=97.6
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccC---------------------CceEEEEeCCCCCHHHHHHHHHHHhcC
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHF---------------------NEKIWVCVSEPFDDIRIAKAILESLKG 273 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f---------------------~~~~wv~~s~~~~~~~~~~~i~~~l~~ 273 (985)
-...+.++|++|+|||++|+.++.. ..... ....++....
T Consensus 23 ~~~a~L~~G~~G~GKt~~a~~la~~--l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~----------------- 83 (334)
T 1a5t_A 23 GHHALLIQALPGMGDDALIYALSRY--LLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEK----------------- 83 (334)
T ss_dssp CCSEEEEECCTTSCHHHHHHHHHHH--HTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCT-----------------
T ss_pred cceeEEEECCCCchHHHHHHHHHHH--HhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccc-----------------
Confidence 3457999999999999999999863 21111 1122222110
Q ss_pred CCCCCCCHHHHHHHHHHHh-----cCceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEEEEEcCchh-hHHhhcCcccc
Q 001993 274 SATNAVESETVLKQLRESI-----EGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRILVTTRNEK-VAIAIGTTKFN 347 (985)
Q Consensus 274 ~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~~~~~~~~ 347 (985)
.......+++.. +.+.+ .+++-++|+|+++.......+.+...+.....+..+|++|.+.. +...+.. ...
T Consensus 84 -~~~~~~i~~ir~-l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~S-Rc~ 160 (334)
T 1a5t_A 84 -GKNTLGVDAVRE-VTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRS-RCR 160 (334)
T ss_dssp -TCSSBCHHHHHH-HHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHT-TSE
T ss_pred -cCCCCCHHHHHH-HHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhh-cce
Confidence 011122333322 22222 35678999999977666667778888876666777777776643 2222221 126
Q ss_pred cccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHHHHH
Q 001993 348 IIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVKTLG 402 (985)
Q Consensus 348 ~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 402 (985)
.+++.+++.++..+.+.+.. .. . .+.+..+++.++|.|..+..+.
T Consensus 161 ~~~~~~~~~~~~~~~L~~~~---~~--~-----~~~~~~l~~~s~G~~r~a~~~l 205 (334)
T 1a5t_A 161 LHYLAPPPEQYAVTWLSREV---TM--S-----QDALLAALRLSAGSPGAALALF 205 (334)
T ss_dssp EEECCCCCHHHHHHHHHHHC---CC--C-----HHHHHHHHHHTTTCHHHHHHTT
T ss_pred eeeCCCCCHHHHHHHHHHhc---CC--C-----HHHHHHHHHHcCCCHHHHHHHh
Confidence 79999999999999998765 11 1 2345778999999998665443
No 170
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.20 E-value=8.7e-06 Score=88.55 Aligned_cols=178 Identities=20% Similarity=0.244 Sum_probs=103.7
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
+++|.+..++.+.+++..+. ...++.+.|++|+|||++|+.+++. .. ...+.++.+. .
T Consensus 27 ~ivg~~~~~~~l~~~l~~~~----------------~~~~~L~~G~~G~GKT~la~~la~~--l~---~~~~~i~~~~-~ 84 (324)
T 3u61_B 27 ECILPAFDKETFKSITSKGK----------------IPHIILHSPSPGTGKTTVAKALCHD--VN---ADMMFVNGSD-C 84 (324)
T ss_dssp TSCCCHHHHHHHHHHHHTTC----------------CCSEEEECSSTTSSHHHHHHHHHHH--TT---EEEEEEETTT-C
T ss_pred HHhCcHHHHHHHHHHHHcCC----------------CCeEEEeeCcCCCCHHHHHHHHHHH--hC---CCEEEEcccc-c
Confidence 68999999999999997433 3457888899999999999999873 32 1234455433 1
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCCC-cccHHHHHhhhcCCCCCcEEEEEcCchhh
Q 001993 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTEE-PQNWEQLLGCLRCGSKESRILVTTRNEKV 337 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-~~~~~~l~~~l~~~~~gs~iivTtR~~~v 337 (985)
. ....+.++....... ...+++.+||+||++... ....+.+...+.....+.++|+||....-
T Consensus 85 ~-~~~i~~~~~~~~~~~---------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~ 148 (324)
T 3u61_B 85 K-IDFVRGPLTNFASAA---------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDG 148 (324)
T ss_dssp C-HHHHHTHHHHHHHBC---------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGG
T ss_pred C-HHHHHHHHHHHHhhc---------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccc
Confidence 1 112222111110000 012478899999997654 44556666666544455678888876431
Q ss_pred -HHhhcCcccccccCCCCChHHHHHH-------HHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHH
Q 001993 338 -AIAIGTTKFNIIPIELLSDEDCWSI-------FSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVK 399 (985)
Q Consensus 338 -~~~~~~~~~~~~~l~~L~~~e~~~L-------f~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 399 (985)
...+.. ....+++.+++.++-.++ +...+...+.. .++ .+....|++.++|.+-.+.
T Consensus 149 l~~~l~s-R~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~--~~~--~~~~~~l~~~~~gd~R~a~ 213 (324)
T 3u61_B 149 IIKPLQS-RCRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIA--IAD--MKVVAALVKKNFPDFRKTI 213 (324)
T ss_dssp SCTTHHH-HSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCC--BSC--HHHHHHHHHHTCSCTTHHH
T ss_pred cCHHHHh-hCcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCC--CCc--HHHHHHHHHhCCCCHHHHH
Confidence 111100 124789999998874333 22222211111 111 2556778888888776443
No 171
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.20 E-value=7.7e-06 Score=92.26 Aligned_cols=179 Identities=18% Similarity=0.202 Sum_probs=102.3
Q ss_pred ceecchhhH---HHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeC
Q 001993 179 EIRGRNHLQ---NKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVS 255 (985)
Q Consensus 179 ~~vGr~~~~---~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s 255 (985)
+++|.+..+ ..+...+..+ ....+.|+|++|+||||+|+.+++ ..... ++.++
T Consensus 27 ~ivGq~~~~~~~~~L~~~i~~~-----------------~~~~vLL~GppGtGKTtlAr~ia~--~~~~~-----f~~l~ 82 (447)
T 3pvs_A 27 QYIGQQHLLAAGKPLPRAIEAG-----------------HLHSMILWGPPGTGKTTLAEVIAR--YANAD-----VERIS 82 (447)
T ss_dssp TCCSCHHHHSTTSHHHHHHHHT-----------------CCCEEEEECSTTSSHHHHHHHHHH--HTTCE-----EEEEE
T ss_pred HhCCcHHHHhchHHHHHHHHcC-----------------CCcEEEEECCCCCcHHHHHHHHHH--HhCCC-----eEEEE
Confidence 688988877 6777777633 346799999999999999999997 33322 22222
Q ss_pred CC-CCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHH-HHhcCceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEEEE-Ec
Q 001993 256 EP-FDDIRIAKAILESLKGSATNAVESETVLKQLR-ESIEGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRILV-TT 332 (985)
Q Consensus 256 ~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~-~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv-Tt 332 (985)
.. ..... .+.++ .... ....+++.+|+||+++.......+.+...+..+ . ..+|. ||
T Consensus 83 a~~~~~~~-ir~~~-----------------~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~-~-v~lI~att 142 (447)
T 3pvs_A 83 AVTSGVKE-IREAI-----------------ERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDG-T-ITFIGATT 142 (447)
T ss_dssp TTTCCHHH-HHHHH-----------------HHHHHHHHTTCCEEEEEETTTCC------CCHHHHHTT-S-CEEEEEES
T ss_pred eccCCHHH-HHHHH-----------------HHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcC-c-eEEEecCC
Confidence 21 11111 11111 1111 112467899999999876655566666666542 2 23443 55
Q ss_pred Cchh--hHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCc--ccchhHHHHHHHHHHhcCCChhHHHHHH
Q 001993 333 RNEK--VAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDI--EESENFENIGRQIVSKCKGLPLAVKTLG 402 (985)
Q Consensus 333 R~~~--v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~--~~~~~~~~~~~~i~~~c~GlPLai~~~~ 402 (985)
.+.. +...+.. ...++.+.+++.++...++.+......... ....-..+....|++.++|.+-.+..+.
T Consensus 143 ~n~~~~l~~aL~s-R~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~L 215 (447)
T 3pvs_A 143 ENPSFELNSALLS-RARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTL 215 (447)
T ss_dssp SCGGGSSCHHHHT-TEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHH
T ss_pred CCcccccCHHHhC-ceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 5542 1111111 125788999999999999988765411100 0011223557778888999887554443
No 172
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.19 E-value=1.4e-05 Score=85.02 Aligned_cols=192 Identities=18% Similarity=0.156 Sum_probs=101.8
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
+++|.+..+++|.+.+...-.. ...... . +-.....+.|+|++|+|||+||+.+++ ..... .+.+..+.-
T Consensus 18 ~i~G~~~~~~~l~~~~~~~~~~-~~~~~~-~--~~~~~~~~ll~G~~GtGKT~la~~la~--~~~~~---~~~v~~~~~- 87 (285)
T 3h4m_A 18 DIGGLEKQMQEIREVVELPLKH-PELFEK-V--GIEPPKGILLYGPPGTGKTLLAKAVAT--ETNAT---FIRVVGSEL- 87 (285)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHC-HHHHHH-H--CCCCCSEEEEESSSSSSHHHHHHHHHH--HTTCE---EEEEEGGGG-
T ss_pred HhcCHHHHHHHHHHHHHHHhhC-HHHHHh-c--CCCCCCeEEEECCCCCcHHHHHHHHHH--HhCCC---EEEEehHHH-
Confidence 7899999999998887532000 000000 0 012345689999999999999999987 33222 222332221
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCC-----------CcccHHHHHhh---hc--CC
Q 001993 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTE-----------EPQNWEQLLGC---LR--CG 322 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----------~~~~~~~l~~~---l~--~~ 322 (985)
... ........+...+.......+.+|+|||++.. .......+... +. ..
T Consensus 88 -------------~~~-~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 153 (285)
T 3h4m_A 88 -------------VKK-FIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDA 153 (285)
T ss_dssp -------------CCC-STTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCS
T ss_pred -------------HHh-ccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCC
Confidence 110 00011112222233333456789999999431 11111223222 22 22
Q ss_pred CCCcEEEEEcCchhhHH-hh-cCcc-cccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCC-ChhHH
Q 001993 323 SKESRILVTTRNEKVAI-AI-GTTK-FNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKG-LPLAV 398 (985)
Q Consensus 323 ~~gs~iivTtR~~~v~~-~~-~~~~-~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G-lPLai 398 (985)
..+..||.||....... .. .... ...+.+.+.+.++..+++.......... .... ...+++.+.| .|-.|
T Consensus 154 ~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~--~~~~----~~~l~~~~~g~~~~~i 227 (285)
T 3h4m_A 154 RGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLA--EDVN----LEEIAKMTEGCVGAEL 227 (285)
T ss_dssp SSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBC--TTCC----HHHHHHHCTTCCHHHH
T ss_pred CCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCC--CcCC----HHHHHHHcCCCCHHHH
Confidence 34567888887553221 11 1111 1478899999999999998876543221 1111 4567777776 45444
Q ss_pred HH
Q 001993 399 KT 400 (985)
Q Consensus 399 ~~ 400 (985)
..
T Consensus 228 ~~ 229 (285)
T 3h4m_A 228 KA 229 (285)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 173
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.17 E-value=3.3e-05 Score=81.08 Aligned_cols=194 Identities=17% Similarity=0.168 Sum_probs=100.6
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
+++|.+..+++|.+++.....+... ...+....+.+.|+|++|+|||++|+.+++ ..... .+.+..+.-.
T Consensus 7 ~i~G~~~~~~~l~~~~~~~~~~~~~-----~~~g~~~~~~vll~G~~GtGKT~la~~la~--~~~~~---~~~~~~~~~~ 76 (262)
T 2qz4_A 7 DVAGMHEAKLEVREFVDYLKSPERF-----LQLGAKVPKGALLLGPPGCGKTLLAKAVAT--EAQVP---FLAMAGAEFV 76 (262)
T ss_dssp SSCSCHHHHHHHHHHHHHHHCCC-----------CCCCCEEEEESCTTSSHHHHHHHHHH--HHTCC---EEEEETTTTS
T ss_pred HhCCHHHHHHHHHHHHHHHHCHHHH-----HHcCCCCCceEEEECCCCCCHHHHHHHHHH--HhCCC---EEEechHHHH
Confidence 6899998887776654321100000 000012345688999999999999999997 33222 2344443311
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCCC------------c---ccHHHHHhhhcC--
Q 001993 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTEE------------P---QNWEQLLGCLRC-- 321 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~------------~---~~~~~l~~~l~~-- 321 (985)
+ .........+...+.......+.+|+||+++... . .....+...+..
T Consensus 77 ~---------------~~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~ 141 (262)
T 2qz4_A 77 E---------------VIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMG 141 (262)
T ss_dssp S---------------SSTTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCC
T ss_pred h---------------hccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcC
Confidence 1 0001111222223333334567999999996431 1 112233333332
Q ss_pred CCCCcEEEEEcCchhhH-HhhcC-cc-cccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChh-H
Q 001993 322 GSKESRILVTTRNEKVA-IAIGT-TK-FNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPL-A 397 (985)
Q Consensus 322 ~~~gs~iivTtR~~~v~-~~~~~-~~-~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-a 397 (985)
...+..||.||...... ..+.. .. ...+.+...+.++-.+++...+...... .. .......+++.+.|.+- .
T Consensus 142 ~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~--~~--~~~~~~~l~~~~~g~~~~~ 217 (262)
T 2qz4_A 142 TTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLT--QS--STFYSQRLAELTPGFSGAD 217 (262)
T ss_dssp TTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCC--BT--HHHHHHHHHHTCTTCCHHH
T ss_pred CCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCC--cc--hhhHHHHHHHHCCCCCHHH
Confidence 22355677777654321 11111 01 1467788999999999998876543221 11 12234678888888754 4
Q ss_pred HHHH
Q 001993 398 VKTL 401 (985)
Q Consensus 398 i~~~ 401 (985)
|..+
T Consensus 218 l~~l 221 (262)
T 2qz4_A 218 IANI 221 (262)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 174
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.15 E-value=3.1e-06 Score=93.18 Aligned_cols=94 Identities=14% Similarity=0.056 Sum_probs=67.5
Q ss_pred CCCCCCcccccCCCCCeEecCC-CCCccccc-hhhcCCCCCcEeeccCcccccccch-hhhhccccceeecccccccccc
Q 001993 613 PVGQIPKGIKKLIHLRYLALGE-NPWIKELP-EALCELCNLQTLDVSLCHYLKRLPE-RIGQLINLRHLMNSKEEWSRLS 689 (985)
Q Consensus 613 ~~~~lp~~i~~l~~Lr~L~L~~-~~~i~~lP-~~i~~L~~L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~n~~~~l~ 689 (985)
.+..+|. |..+.+|++|+|++ |. +..+| ..++.|.+|++|+|++|. +..+|. .+..|++|++|+|++|.. .
T Consensus 20 ~l~~ip~-l~~~~~L~~L~l~~~n~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l---~ 93 (347)
T 2ifg_A 20 ALDSLHH-LPGAENLTELYIENQQH-LQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSFNAL---E 93 (347)
T ss_dssp CCTTTTT-SCSCSCCSEEECCSCSS-CCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCSSCC---S
T ss_pred CCCccCC-CCCCCCeeEEEccCCCC-CCCcChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCCCCcc---c
Confidence 3566787 88888888888886 66 77777 468888888888888887 666654 568888888888886644 5
Q ss_pred cCCCcCCCCCCCCccCceEecCC
Q 001993 690 YMPRGMERLTGLRTLGAFVASGG 712 (985)
Q Consensus 690 ~~p~~i~~L~~L~~L~~~~~~~~ 712 (985)
.+|..+.....|+.|++..+...
T Consensus 94 ~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 94 SLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp CCCSTTTCSCCCCEEECCSSCCC
T ss_pred eeCHHHcccCCceEEEeeCCCcc
Confidence 66665444334888777655444
No 175
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.11 E-value=2.7e-05 Score=84.03 Aligned_cols=174 Identities=15% Similarity=0.138 Sum_probs=93.4
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
+++|.+..++.|.+++....-..... .....+......+.|+|++|+|||++|+.+++...........-++.++.
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~--~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~-- 107 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQ--KLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTR-- 107 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHH--HHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECG--
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHH--HcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcH--
Confidence 57888888888876654210000000 00000013445789999999999999998887322222221222333321
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCC---------CcccHHHHHhhhcCCCCCcEEE
Q 001993 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTE---------EPQNWEQLLGCLRCGSKESRIL 329 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~ii 329 (985)
..+.... ...........+... +..+|+||+++.. .......+...+.....+..||
T Consensus 108 ----------~~l~~~~-~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i 173 (309)
T 3syl_A 108 ----------DDLVGQY-IGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVI 173 (309)
T ss_dssp ----------GGTCCSS-TTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEE
T ss_pred ----------HHhhhhc-ccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEE
Confidence 0111110 111112222222222 3469999999632 3444566777666666677888
Q ss_pred EEcCchhhHHhh--cC----cccccccCCCCChHHHHHHHHHHhcCC
Q 001993 330 VTTRNEKVAIAI--GT----TKFNIIPIELLSDEDCWSIFSQLALSR 370 (985)
Q Consensus 330 vTtR~~~v~~~~--~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~ 370 (985)
.||......... .. .-...+.+.+++.++..+++...+...
T Consensus 174 ~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~ 220 (309)
T 3syl_A 174 LAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQ 220 (309)
T ss_dssp EEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHHT
T ss_pred EeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHc
Confidence 888654321111 00 001578999999999999998876543
No 176
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.10 E-value=1.5e-05 Score=92.44 Aligned_cols=207 Identities=14% Similarity=0.133 Sum_probs=109.3
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
+++|++..++++.+++.................+.+..+.+.|+|++|+||||+|+.+++. .. + .++.++++...
T Consensus 40 dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~--l~--~-~~i~in~s~~~ 114 (516)
T 1sxj_A 40 QVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQE--LG--Y-DILEQNASDVR 114 (516)
T ss_dssp GCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHH--TT--C-EEEEECTTSCC
T ss_pred HhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHH--cC--C-CEEEEeCCCcc
Confidence 7999999999999999742100000000000000124578999999999999999999973 31 1 23445555444
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCCCc---ccHHHHHhhhcCCCCCcEEEEEcCch
Q 001993 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTEEP---QNWEQLLGCLRCGSKESRILVTTRNE 335 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~---~~~~~l~~~l~~~~~gs~iivTtR~~ 335 (985)
... .....+........-..-...... .....+++.+||+|+++.... ..+..+...+... +..||+++...
T Consensus 115 ~~~-~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~~~~ 189 (516)
T 1sxj_A 115 SKT-LLNAGVKNALDNMSVVGYFKHNEE--AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILICNER 189 (516)
T ss_dssp CHH-HHHHTGGGGTTBCCSTTTTTC------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEESCT
T ss_pred hHH-HHHHHHHHHhccccHHHHHhhhhh--hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEEcCC
Confidence 432 222222222111000000000000 001135788999999964322 2234555554432 23355555443
Q ss_pred h---hHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChh-HHHHHH
Q 001993 336 K---VAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPL-AVKTLG 402 (985)
Q Consensus 336 ~---v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~~ 402 (985)
. +...... ...+.+.+++.++..+.+...+...... ..+ +....|++.++|.+- ++..+.
T Consensus 190 ~~~~l~~l~~r--~~~i~f~~~~~~~~~~~L~~i~~~~~~~--i~~---~~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 190 NLPKMRPFDRV--CLDIQFRRPDANSIKSRLMTIAIREKFK--LDP---NVIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp TSSTTGGGTTT--SEEEECCCCCHHHHHHHHHHHHHHHTCC--CCT---THHHHHHHHTTTCHHHHHHHHT
T ss_pred CCccchhhHhc--eEEEEeCCCCHHHHHHHHHHHHHHcCCC--CCH---HHHHHHHHHcCCcHHHHHHHHH
Confidence 2 2221111 2578999999999999888766433221 111 346788899999554 455443
No 177
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.05 E-value=4.1e-05 Score=83.75 Aligned_cols=175 Identities=15% Similarity=0.180 Sum_probs=105.8
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhc-cCC-ceEEEEeCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRN-HFN-EKIWVCVSE 256 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-~f~-~~~wv~~s~ 256 (985)
+++|.+..++.|..++..+. ..-+.++|++|+||||+|+.++.. ... .+. .+.-++.+.
T Consensus 26 ~~~g~~~~~~~L~~~i~~g~-----------------~~~~ll~Gp~G~GKTtla~~la~~--l~~~~~~~~~~~~~~~~ 86 (340)
T 1sxj_C 26 EVYGQNEVITTVRKFVDEGK-----------------LPHLLFYGPPGTGKTSTIVALARE--IYGKNYSNMVLELNASD 86 (340)
T ss_dssp GCCSCHHHHHHHHHHHHTTC-----------------CCCEEEECSSSSSHHHHHHHHHHH--HHTTSHHHHEEEECTTS
T ss_pred HhcCcHHHHHHHHHHHhcCC-----------------CceEEEECCCCCCHHHHHHHHHHH--HcCCCccceEEEEcCcc
Confidence 57898888888888887332 223899999999999999999873 221 111 122222222
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh------cCceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEEEE
Q 001993 257 PFDDIRIAKAILESLKGSATNAVESETVLKQLRESI------EGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRILV 330 (985)
Q Consensus 257 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l------~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv 330 (985)
... .+.+...+.... .+.+-++|+|+++.......+.+...+.......++|+
T Consensus 87 ~~~---------------------~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il 145 (340)
T 1sxj_C 87 DRG---------------------IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCV 145 (340)
T ss_dssp CCS---------------------HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEE
T ss_pred ccc---------------------HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEE
Confidence 111 122222222111 23467899999976555566667777665555667777
Q ss_pred EcCchh-hHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHH
Q 001993 331 TTRNEK-VAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVK 399 (985)
Q Consensus 331 TtR~~~-v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 399 (985)
+|.... +...+.. ....+.+.+++.++..+.+.+.+...... .. .+....|++.++|.+--+.
T Consensus 146 ~~n~~~~i~~~i~s-R~~~~~~~~l~~~~~~~~l~~~~~~~~~~--i~---~~~~~~i~~~s~G~~r~~~ 209 (340)
T 1sxj_C 146 LANYAHKLTPALLS-QCTRFRFQPLPQEAIERRIANVLVHEKLK--LS---PNAEKALIELSNGDMRRVL 209 (340)
T ss_dssp EESCGGGSCHHHHT-TSEEEECCCCCHHHHHHHHHHHHHTTTCC--BC---HHHHHHHHHHHTTCHHHHH
T ss_pred EecCccccchhHHh-hceeEeccCCCHHHHHHHHHHHHHHcCCC--CC---HHHHHHHHHHcCCCHHHHH
Confidence 775432 1111111 12468899999999998888766333221 11 2456778888999887443
No 178
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.04 E-value=5.6e-05 Score=79.77 Aligned_cols=173 Identities=17% Similarity=0.187 Sum_probs=91.4
Q ss_pred ceecchhhHHHHHH-------HHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEE
Q 001993 179 EIRGRNHLQNKVAS-------LLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIW 251 (985)
Q Consensus 179 ~~vGr~~~~~~l~~-------~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~w 251 (985)
.++|....+++++. .+.... ......+.|+|++|+|||++|+.+++. .. +.. +.
T Consensus 34 ~~i~~~~~~~~i~~~~~~l~~~l~~~~--------------~~~~~~vLl~G~~GtGKT~la~~ia~~--~~--~~~-~~ 94 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELLVQQTKNSD--------------RTPLVSVLLEGPPHSGKTALAAKIAEE--SN--FPF-IK 94 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHCS--------------SCSEEEEEEECSTTSSHHHHHHHHHHH--HT--CSE-EE
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhccC--------------CCCCeEEEEECCCCCcHHHHHHHHHHH--hC--CCE-EE
Confidence 57777777666665 332221 235578999999999999999999983 22 221 22
Q ss_pred EEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCC----------CcccHHHHHhhhcC
Q 001993 252 VCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTE----------EPQNWEQLLGCLRC 321 (985)
Q Consensus 252 v~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~----------~~~~~~~l~~~l~~ 321 (985)
+..++. +.+. ........+...+......++.+|+|||++.. .....+.+...+..
T Consensus 95 i~~~~~-------------~~g~-~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~ 160 (272)
T 1d2n_A 95 ICSPDK-------------MIGF-SETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKK 160 (272)
T ss_dssp EECGGG-------------CTTC-CHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTC
T ss_pred EeCHHH-------------hcCC-chHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcC
Confidence 222210 1110 00000112222333333467899999998431 11112223333322
Q ss_pred ---CCCCcEEEEEcCchhhHHhhc--CcccccccCCCCCh-HHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCC
Q 001993 322 ---GSKESRILVTTRNEKVAIAIG--TTKFNIIPIELLSD-EDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGL 394 (985)
Q Consensus 322 ---~~~gs~iivTtR~~~v~~~~~--~~~~~~~~l~~L~~-~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl 394 (985)
......||.||.......... ..-...+.+.+++. ++...++.+.. ... .+....|++.+.|.
T Consensus 161 ~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~-------~~~---~~~~~~l~~~~~g~ 229 (272)
T 1d2n_A 161 APPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG-------NFK---DKERTTIAQQVKGK 229 (272)
T ss_dssp CCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT-------CSC---HHHHHHHHHHHTTS
T ss_pred ccCCCCCEEEEEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC-------CCC---HHHHHHHHHHhcCC
Confidence 223345677777765433211 11024678899988 66666665532 111 23467788888873
No 179
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.04 E-value=3.8e-07 Score=100.08 Aligned_cols=141 Identities=21% Similarity=0.214 Sum_probs=76.9
Q ss_pred CCCCCCCeEEEeeccCCCCCCCChhhhccccccEEeEeccCCCC-cCCCC--CCCCccceeeccCCCCceEeCCcccCCc
Q 001993 786 QPPSSLEKLGIYGYAGDTISPTSDWMLSLAKLRVLTLRFCNECE-CLPPL--GKLPCLETLVLEGMSSVKRLGNGFLGIA 862 (985)
Q Consensus 786 ~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~-~l~~l--~~l~~L~~L~L~~~~~l~~l~~~~~~~~ 862 (985)
.++++|+.|.|+++.+..+ +. + .+++|++|+|..|.... .+..+ ..+|+|+.|+|+.+.+. ..+.. ...
T Consensus 169 ~~~P~L~~L~L~g~~~l~l---~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~-~~~~~--~~~ 240 (362)
T 2ra8_A 169 DAMPLLNNLKIKGTNNLSI---GK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVED-YGFDG--DMN 240 (362)
T ss_dssp HTCTTCCEEEEECCBTCBC---CS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGG-GTCCS--CGG
T ss_pred hcCCCCcEEEEeCCCCcee---cc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccc-cccch--hHH
Confidence 4557788888877754444 33 2 36788888887764211 11122 26788888887532110 00000 000
Q ss_pred hhhhhhhhhhhcccccccCCCCCccceeecccccccccccc-ccccCcccccccccceeecccccCCC-----CCCCCCC
Q 001993 863 EDHQARADQAETASSIIRDTAFPRLETLEFLDMEKWEEWDD-CEIAGGKTIMPRLRHLSICWSPELKA-----LPDYILG 936 (985)
Q Consensus 863 ~~~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~-~~~~~~~~~lp~L~~L~i~~c~~L~~-----lp~~~~~ 936 (985)
. .........||+|+.|.|.+|.--..... .. ....+|+|++|+++.| .++. ++.++.+
T Consensus 241 ~-----------l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la---~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~ 305 (362)
T 2ra8_A 241 V-----------FRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFL---ESDILPQLETMDISAG-VLTDEGARLLLDHVDK 305 (362)
T ss_dssp G-----------TGGGSCTTTCTTCCEEEEESCTTHHHHHHHHH---HCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHH
T ss_pred H-----------HHHHHhcCCCCCcCEEeCCCCCCchHHHHHHH---hCccCCCCCEEECCCC-CCChHHHHHHHhhccc
Confidence 0 00011123588888888877542211110 00 1235788888888765 4554 4455567
Q ss_pred CCCcCeEEecCch
Q 001993 937 STSLDKLLIYYSR 949 (985)
Q Consensus 937 l~~L~~L~i~~c~ 949 (985)
+++|+.|+|++|.
T Consensus 306 l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 306 IKHLKFINMKYNY 318 (362)
T ss_dssp HTTCSEEECCSBB
T ss_pred CCcceEEECCCCc
Confidence 7888888888875
No 180
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.03 E-value=7.4e-06 Score=80.87 Aligned_cols=44 Identities=18% Similarity=0.243 Sum_probs=37.6
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcc
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFND 239 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 239 (985)
.++||+.+++.+.+.+... ....+.|+|++|+|||++|+.+++.
T Consensus 23 ~~~g~~~~~~~l~~~l~~~-----------------~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 23 PVIGRDTEIRRAIQILSRR-----------------TKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CCCSCHHHHHHHHHHHTSS-----------------SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred hhhcchHHHHHHHHHHhCC-----------------CCCceEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999998632 3346789999999999999999873
No 181
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.00 E-value=5.9e-06 Score=77.85 Aligned_cols=114 Identities=15% Similarity=0.073 Sum_probs=70.6
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
+++|+...++++.+.+.... ....-|.|+|.+|+|||++|+.+++... +..... + ++++...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a---------------~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~-v-~~~~~~~ 63 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLS---------------ETDIAVWLYGAPGTGRMTGARYLHQFGR-NAQGEF-V-YRELTPD 63 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHT---------------TCCSCEEEESSTTSSHHHHHHHHHHSST-TTTSCC-E-EEECCTT
T ss_pred CceeCCHHHHHHHHHHHHHh---------------CCCCCEEEECCCCCCHHHHHHHHHHhCC-ccCCCE-E-EECCCCC
Confidence 58999999999998886432 1123478999999999999999987421 112222 3 5554422
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEEEEEcCc
Q 001993 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRILVTTRN 334 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~ 334 (985)
+. ..... .+.. ...-.|+||+++.........+...+.......+||.||..
T Consensus 64 ~~------------------~~~~~---~~~~---a~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 64 NA------------------PQLND---FIAL---AQGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp TS------------------SCHHH---HHHH---HTTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred cc------------------hhhhc---HHHH---cCCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 21 11111 1111 12357899999876666667777777655556678887764
No 182
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.00 E-value=0.00012 Score=79.07 Aligned_cols=195 Identities=14% Similarity=0.065 Sum_probs=103.3
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhh-hccCCceEEEEeCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEV-RNHFNEKIWVCVSEP 257 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~f~~~~wv~~s~~ 257 (985)
+++|.+..++.|.+.+...-. ....... .....+-|.|+|++|+|||+||+.+++. . .. ..+.++.+.-
T Consensus 13 di~G~~~~k~~l~~~v~~p~~---~~~~~~~--~~~~~~~iLL~GppGtGKT~la~ala~~--~~~~---~~~~i~~~~l 82 (322)
T 1xwi_A 13 DVAGLEGAKEALKEAVILPIK---FPHLFTG--KRTPWRGILLFGPPGTGKSYLAKAVATE--ANNS---TFFSISSSDL 82 (322)
T ss_dssp GSCSCHHHHHHHHHHHHHHHH---CGGGSCT--TCCCCSEEEEESSSSSCHHHHHHHHHHH--TTSC---EEEEEECCSS
T ss_pred HhcCHHHHHHHHHHHHHHHHh---CHHHHhC--CCCCCceEEEECCCCccHHHHHHHHHHH--cCCC---cEEEEEhHHH
Confidence 689999988888876642100 0000000 0123467899999999999999999973 2 11 1223333321
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCCC-------ccc----HHHHHhhhcC---CC
Q 001993 258 FDDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTEE-------PQN----WEQLLGCLRC---GS 323 (985)
Q Consensus 258 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-------~~~----~~~l~~~l~~---~~ 323 (985)
. .. ........+...+...-..++.+|+||+++... ... ...+...+.. ..
T Consensus 83 ~--------------~~-~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~ 147 (322)
T 1xwi_A 83 V--------------SK-WLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDN 147 (322)
T ss_dssp C--------------CS-SCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCC
T ss_pred H--------------hh-hhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccC
Confidence 1 11 111122222222333334678999999995420 011 1223333322 23
Q ss_pred CCcEEEEEcCchh-hHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCC-hhHHHHH
Q 001993 324 KESRILVTTRNEK-VAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGL-PLAVKTL 401 (985)
Q Consensus 324 ~gs~iivTtR~~~-v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl-PLai~~~ 401 (985)
.+..||.||.... +...+...-...+.+...+.++-.++++.+....... .. ......|++.+.|. +-.|..+
T Consensus 148 ~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~--l~---~~~l~~la~~t~G~sgadl~~l 222 (322)
T 1xwi_A 148 DGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNS--LT---EADFRELGRKTDGYSGADISII 222 (322)
T ss_dssp TTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBC--CC---HHHHHHHHHTCTTCCHHHHHHH
T ss_pred CCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCC--CC---HHHHHHHHHHcCCCCHHHHHHH
Confidence 4555666665442 2111111101467888889999999998876433211 11 23467888999887 4445554
Q ss_pred Hh
Q 001993 402 GS 403 (985)
Q Consensus 402 ~~ 403 (985)
..
T Consensus 223 ~~ 224 (322)
T 1xwi_A 223 VR 224 (322)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 183
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.99 E-value=0.00016 Score=80.86 Aligned_cols=304 Identities=13% Similarity=0.030 Sum_probs=148.7
Q ss_pred CccccCCCCceEEEccCcCCcchhhhHHHhhccCCcceeecCC-CCCCCCc-ccccCCCCCeEecCCCCCccccch-hhc
Q 001993 570 PSMVYDETKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL-PVGQIPK-GIKKLIHLRYLALGENPWIKELPE-ALC 646 (985)
Q Consensus 570 ~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~-~~~~lp~-~i~~l~~Lr~L~L~~~~~i~~lP~-~i~ 646 (985)
..+|.++.+|+++.+.... ..+-...|.+++.|+.+++. .+..++. .+..+..|+.+.+..+ +..++. .+.
T Consensus 64 ~~AF~~c~~L~~i~lp~~i----~~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~c~~L~~i~~p~~--l~~i~~~aF~ 137 (394)
T 4fs7_A 64 YAAFQGCRKVTEIKIPSTV----REIGEFAFENCSKLEIINIPDSVKMIGRCTFSGCYALKSILLPLM--LKSIGVEAFK 137 (394)
T ss_dssp TTTTTTCTTEEEEECCTTC----CEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCTTCCCCCCCTT--CCEECTTTTT
T ss_pred HHHhhCCCCceEEEeCCCc----cCcchhHhhCCCCCcEEEeCCCceEccchhhcccccchhhcccCc--eeeecceeee
Confidence 4466778888888886542 22223458888888888885 5555543 4566777777666544 333332 344
Q ss_pred CCCCCcEeeccCcccccccc-hhhhhccccceeecccccccccccCCC-cCCCCCCCCccCceEecCCCcccccCCchhh
Q 001993 647 ELCNLQTLDVSLCHYLKRLP-ERIGQLINLRHLMNSKEEWSRLSYMPR-GMERLTGLRTLGAFVASGGKSSKACSSLKSL 724 (985)
Q Consensus 647 ~L~~L~~L~l~~~~~l~~lP-~~i~~L~~L~~L~l~~n~~~~l~~~p~-~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L 724 (985)
.+..+........ ..+. ..+..+.+|+.+.+..+ +..++. .+.++.+|+.+.+... .... +...+..+
T Consensus 138 ~~~~~~~~~~~~~---~~i~~~aF~~c~~L~~i~l~~~----~~~I~~~~F~~c~~L~~i~l~~~-~~~I--~~~~F~~~ 207 (394)
T 4fs7_A 138 GCDFKEITIPEGV---TVIGDEAFATCESLEYVSLPDS----METLHNGLFSGCGKLKSIKLPRN-LKII--RDYCFAEC 207 (394)
T ss_dssp TCCCSEEECCTTC---CEECTTTTTTCTTCCEEECCTT----CCEECTTTTTTCTTCCBCCCCTT-CCEE--CTTTTTTC
T ss_pred cccccccccCccc---cccchhhhcccCCCcEEecCCc----cceeccccccCCCCceEEEcCCC-ceEe--Cchhhccc
Confidence 4443333333222 2222 34566777777777521 133333 3556666666655211 0000 01123333
Q ss_pred hccccCcceeeecccccccCCCCcchhhhcccccccccccEEEEEcCCCCcchhHhhhcCCCCCCCCCeEEEeeccCCCC
Q 001993 725 NKLKHLEGSLTLRGLGNERDLGDDNDDEKVDLKSKMKLVDLHLRFDSTTKTKDHRVVLECLQPPSSLEKLGIYGYAGDTI 804 (985)
Q Consensus 725 ~~L~~L~~~L~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 804 (985)
..|..+. +.. +. .........+.+|+.+.+.... ...-...+..+..|+.+.+..+.. .+
T Consensus 208 ~~L~~i~----~~~--~~-------~~i~~~~~~~~~l~~i~ip~~~------~~i~~~~f~~~~~l~~~~~~~~~~-~i 267 (394)
T 4fs7_A 208 ILLENME----FPN--SL-------YYLGDFALSKTGVKNIIIPDSF------TELGKSVFYGCTDLESISIQNNKL-RI 267 (394)
T ss_dssp TTCCBCC----CCT--TC-------CEECTTTTTTCCCCEEEECTTC------CEECSSTTTTCSSCCEEEECCTTC-EE
T ss_pred cccceee----cCC--Cc-------eEeehhhcccCCCceEEECCCc------eecccccccccccceeEEcCCCcc-ee
Confidence 3333221 100 00 0000112223455555543111 000012234456677766654432 12
Q ss_pred CCCChhhhccccccEEeEeccCCCCcCC--CCCCCCccceeeccCCCCceEeCCcccCCchhhhhhhhhhhcccccccCC
Q 001993 805 SPTSDWMLSLAKLRVLTLRFCNECECLP--PLGKLPCLETLVLEGMSSVKRLGNGFLGIAEDHQARADQAETASSIIRDT 882 (985)
Q Consensus 805 ~~~p~~~~~l~~L~~L~L~~~~~~~~l~--~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 882 (985)
. ...+..+..|+.+.+.... ++ .+..+.+|+.+.+.+ +++.++...+ .
T Consensus 268 ~--~~~F~~~~~l~~~~~~~~~----i~~~~F~~~~~L~~i~l~~--~i~~I~~~aF----------------------~ 317 (394)
T 4fs7_A 268 G--GSLFYNCSGLKKVIYGSVI----VPEKTFYGCSSLTEVKLLD--SVKFIGEEAF----------------------E 317 (394)
T ss_dssp C--SCTTTTCTTCCEEEECSSE----ECTTTTTTCTTCCEEEECT--TCCEECTTTT----------------------T
T ss_pred e--ccccccccccceeccCcee----ecccccccccccccccccc--ccceechhhh----------------------c
Confidence 1 2334455666666654431 22 345667777777753 3566655432 1
Q ss_pred CCCccceeeccccccccccccccccCcccccccccceeecccccCCCCC-CCCCCCCCcCeEEecC
Q 001993 883 AFPRLETLEFLDMEKWEEWDDCEIAGGKTIMPRLRHLSICWSPELKALP-DYILGSTSLDKLLIYY 947 (985)
Q Consensus 883 ~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~lp~L~~L~i~~c~~L~~lp-~~~~~l~~L~~L~i~~ 947 (985)
.+.+|+.+.|.+ +++.+.. .....+++|+.+.+.. .++.++ ..+.+|++|+.++|..
T Consensus 318 ~c~~L~~i~lp~--~v~~I~~----~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 318 SCTSLVSIDLPY--LVEEIGK----RSFRGCTSLSNINFPL--SLRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp TCTTCCEECCCT--TCCEECT----TTTTTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEEG
T ss_pred CCCCCCEEEeCC--cccEEhH----HhccCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEECC
Confidence 345677776642 2333221 1233567777777754 255554 3456777788777753
No 184
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.99 E-value=0.00028 Score=78.62 Aligned_cols=257 Identities=14% Similarity=0.123 Sum_probs=147.6
Q ss_pred CCcceeecCC-CCCCCCcc-cccCCCCCeEecCCCCCccccchh-hcCCCCCcEeeccCcccccccc-hhhhhcccccee
Q 001993 603 LTCLRSIDGL-PVGQIPKG-IKKLIHLRYLALGENPWIKELPEA-LCELCNLQTLDVSLCHYLKRLP-ERIGQLINLRHL 678 (985)
Q Consensus 603 l~~Lr~L~l~-~~~~lp~~-i~~l~~Lr~L~L~~~~~i~~lP~~-i~~L~~L~~L~l~~~~~l~~lP-~~i~~L~~L~~L 678 (985)
+..+..+.+- .+..++.. +.+ .+|+.+.+..+ +..++.. +.. .+|+.+.+.. .+..++ ..+..+.+|+.+
T Consensus 112 ~~~l~~i~ip~~i~~I~~~aF~~-~~L~~i~l~~~--i~~I~~~aF~~-~~L~~i~lp~--~l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 112 LKGYNEIILPNSVKSIPKDAFRN-SQIAKVVLNEG--LKSIGDMAFFN-STVQEIVFPS--TLEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp CSSCSEEECCTTCCEECTTTTTT-CCCSEEECCTT--CCEECTTTTTT-CCCCEEECCT--TCCEECSSTTTTCTTCCEE
T ss_pred cCCccEEEECCccCEehHhhccc-CCccEEEeCCC--ccEECHHhcCC-CCceEEEeCC--CccEehHHHhhCcccCCee
Confidence 3455555554 55555543 444 47888888765 6777653 444 4799998875 366665 456788999999
Q ss_pred ecccccccccccCCCcCCCCCCCCccCceEecCCCcccccCCchhhhccccCcceeeecccccccCCCCcchhhhccccc
Q 001993 679 MNSKEEWSRLSYMPRGMERLTGLRTLGAFVASGGKSSKACSSLKSLNKLKHLEGSLTLRGLGNERDLGDDNDDEKVDLKS 758 (985)
Q Consensus 679 ~l~~n~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~~~~l~~ 758 (985)
++..|. +..+|.+.-..++|+.+.+... .... + ...|..
T Consensus 186 ~l~~n~---l~~I~~~aF~~~~L~~l~lp~~-l~~I--~-----------------------------------~~aF~~ 224 (401)
T 4fdw_A 186 DLSKTK---ITKLPASTFVYAGIEEVLLPVT-LKEI--G-----------------------------------SQAFLK 224 (401)
T ss_dssp ECTTSC---CSEECTTTTTTCCCSEEECCTT-CCEE--C-----------------------------------TTTTTT
T ss_pred ecCCCc---ceEechhhEeecccCEEEeCCc-hhee--h-----------------------------------hhHhhC
Confidence 987543 3556654333456665544210 0000 0 012333
Q ss_pred ccccccEEEEEcCCCCcchhHhhhcCCCCCCCCCeEEEeeccCCCCCCCChhhhccccccEEeEeccCCC----CcCC--
Q 001993 759 KMKLVDLHLRFDSTTKTKDHRVVLECLQPPSSLEKLGIYGYAGDTISPTSDWMLSLAKLRVLTLRFCNEC----ECLP-- 832 (985)
Q Consensus 759 ~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~----~~l~-- 832 (985)
+.+|+.+.+..+- .... ...+.. .+|+.+.+..+ ...+. +..+..+++|+.+.+.++... ..++
T Consensus 225 ~~~L~~l~l~~~l---~~I~---~~aF~~-~~L~~i~lp~~-i~~I~--~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~ 294 (401)
T 4fdw_A 225 TSQLKTIEIPENV---STIG---QEAFRE-SGITTVKLPNG-VTNIA--SRAFYYCPELAEVTTYGSTFNDDPEAMIHPY 294 (401)
T ss_dssp CTTCCCEECCTTC---CEEC---TTTTTT-CCCSEEEEETT-CCEEC--TTTTTTCTTCCEEEEESSCCCCCTTCEECTT
T ss_pred CCCCCEEecCCCc---cCcc---cccccc-CCccEEEeCCC-ccEEC--hhHhhCCCCCCEEEeCCccccCCcccEECHH
Confidence 4444444443211 0000 011222 46777777432 23332 445667888999988876432 1243
Q ss_pred CCCCCCccceeeccCCCCceEeCCcccCCchhhhhhhhhhhcccccccCCCCCccceeeccccccccccccccccCcccc
Q 001993 833 PLGKLPCLETLVLEGMSSVKRLGNGFLGIAEDHQARADQAETASSIIRDTAFPRLETLEFLDMEKWEEWDDCEIAGGKTI 912 (985)
Q Consensus 833 ~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~ 912 (985)
.+.+|++|+.+.|.+ +++.++...+ .++++|+.+.|.. +++.+.. .....
T Consensus 295 aF~~c~~L~~l~l~~--~i~~I~~~aF----------------------~~c~~L~~l~lp~--~l~~I~~----~aF~~ 344 (401)
T 4fdw_A 295 CLEGCPKLARFEIPE--SIRILGQGLL----------------------GGNRKVTQLTIPA--NVTQINF----SAFNN 344 (401)
T ss_dssp TTTTCTTCCEECCCT--TCCEECTTTT----------------------TTCCSCCEEEECT--TCCEECT----TSSSS
T ss_pred HhhCCccCCeEEeCC--ceEEEhhhhh----------------------cCCCCccEEEECc--cccEEcH----HhCCC
Confidence 477889999999974 4778876544 2457888888853 3444332 12335
Q ss_pred cccccceeecccccCCCCC-CCCCCCC-CcCeEEecCc
Q 001993 913 MPRLRHLSICWSPELKALP-DYILGST-SLDKLLIYYS 948 (985)
Q Consensus 913 lp~L~~L~i~~c~~L~~lp-~~~~~l~-~L~~L~i~~c 948 (985)
+ +|+.|.+.++ .+..++ ..+.+++ +++.|.+-.-
T Consensus 345 ~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 345 T-GIKEVKVEGT-TPPQVFEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp S-CCCEEEECCS-SCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred C-CCCEEEEcCC-CCcccccccccCCCCCccEEEeCHH
Confidence 5 8999999886 445554 3345553 6788888664
No 185
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.97 E-value=5.7e-05 Score=83.02 Aligned_cols=194 Identities=15% Similarity=0.083 Sum_probs=102.9
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
+++|.+..+++|.+.+...-.. ....... ....+.|.|+|++|+|||+||+.+++ ..... .+.++.+.-.
T Consensus 85 ~i~G~~~~~~~l~~~i~~~~~~--~~~~~~~---~~~~~~vLl~GppGtGKT~la~aia~--~~~~~---~~~i~~~~l~ 154 (357)
T 3d8b_A 85 DIAGVEFAKATIKEIVVWPMLR--PDIFTGL---RGPPKGILLFGPPGTGKTLIGKCIAS--QSGAT---FFSISASSLT 154 (357)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHC--TTTSCGG---GSCCSEEEEESSTTSSHHHHHHHHHH--HTTCE---EEEEEGGGGC
T ss_pred HhCChHHHHHHHHHHHHHHhhC--hHhHhhc---cCCCceEEEECCCCCCHHHHHHHHHH--HcCCe---EEEEehHHhh
Confidence 6899999999998877521000 0000000 12356789999999999999999987 33221 2344443211
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHH-HHHHhcCceEEEEecCCCCCC-----------cccHHHHHhhhcC----C
Q 001993 259 DDIRIAKAILESLKGSATNAVESETVLKQ-LRESIEGKKFFLVLDDVWTEE-----------PQNWEQLLGCLRC----G 322 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~-l~~~l~~k~~LlVlDdv~~~~-----------~~~~~~l~~~l~~----~ 322 (985)
. .. . ......... +...-..++.+|+||+++... ......+...+.. .
T Consensus 155 ~--------------~~-~-g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~ 218 (357)
T 3d8b_A 155 S--------------KW-V-GEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSS 218 (357)
T ss_dssp C--------------SS-T-THHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----C
T ss_pred c--------------cc-c-chHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccC
Confidence 1 00 0 011111222 222223567899999983210 0112334433332 1
Q ss_pred CCCcEEEEEcCchh-hHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCC-ChhHHHH
Q 001993 323 SKESRILVTTRNEK-VAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKG-LPLAVKT 400 (985)
Q Consensus 323 ~~gs~iivTtR~~~-v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G-lPLai~~ 400 (985)
..+..||.||.... +...+...-...+.+...+.++..+++...+...... .. .+....|++.+.| .+-.|..
T Consensus 219 ~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~--l~---~~~l~~la~~t~G~s~~dl~~ 293 (357)
T 3d8b_A 219 EDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCC--LS---EEEIEQIVQQSDAFSGADMTQ 293 (357)
T ss_dssp CCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBC--CC---HHHHHHHHHHTTTCCHHHHHH
T ss_pred CCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCC--cc---HHHHHHHHHHcCCCCHHHHHH
Confidence 23445666665432 2222211111367788889999888888776433211 11 2456778888888 4555555
Q ss_pred HHh
Q 001993 401 LGS 403 (985)
Q Consensus 401 ~~~ 403 (985)
+..
T Consensus 294 l~~ 296 (357)
T 3d8b_A 294 LCR 296 (357)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 186
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.96 E-value=8.6e-05 Score=80.55 Aligned_cols=157 Identities=18% Similarity=0.182 Sum_probs=89.2
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcC
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEG 294 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 294 (985)
....+.|+|++|+||||||+.+++. ....-..++++++. .+...+...+... ..+. +.+.+ .
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~--~~~~~~~~~~i~~~------~~~~~~~~~~~~~-----~~~~----~~~~~-~ 97 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNE--AKKRGYRVIYSSAD------DFAQAMVEHLKKG-----TINE----FRNMY-K 97 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHH--HHHTTCCEEEEEHH------HHHHHHHHHHHHT-----CHHH----HHHHH-H
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH--HHHCCCEEEEEEHH------HHHHHHHHHHHcC-----cHHH----HHHHh-c
Confidence 3457899999999999999999983 32211234555532 3333444333211 1111 22222 2
Q ss_pred ceEEEEecCCCCCCc--ccHHHHHhhhcC-CCCCcEEEEEcCchh---------hHHhhcCcccccccCCCCChHHHHHH
Q 001993 295 KKFFLVLDDVWTEEP--QNWEQLLGCLRC-GSKESRILVTTRNEK---------VAIAIGTTKFNIIPIELLSDEDCWSI 362 (985)
Q Consensus 295 k~~LlVlDdv~~~~~--~~~~~l~~~l~~-~~~gs~iivTtR~~~---------v~~~~~~~~~~~~~l~~L~~~e~~~L 362 (985)
+..+|++||+..... ...+.+...+.. ...|..||+||.... +...+... ..+++.+ +.++..++
T Consensus 98 ~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~--~~i~l~~-~~~e~~~i 174 (324)
T 1l8q_A 98 SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGG--ILVEIEL-DNKTRFKI 174 (324)
T ss_dssp TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTS--EEEECCC-CHHHHHHH
T ss_pred CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCc--eEEEeCC-CHHHHHHH
Confidence 367999999965332 223334444321 123557888876431 22222222 4689999 99999999
Q ss_pred HHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHH
Q 001993 363 FSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAV 398 (985)
Q Consensus 363 f~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 398 (985)
+...+...... .+ .++...|++.+ |..-.+
T Consensus 175 l~~~~~~~~~~--l~---~~~l~~l~~~~-g~~r~l 204 (324)
T 1l8q_A 175 IKEKLKEFNLE--LR---KEVIDYLLENT-KNVREI 204 (324)
T ss_dssp HHHHHHHTTCC--CC---HHHHHHHHHHC-SSHHHH
T ss_pred HHHHHHhcCCC--CC---HHHHHHHHHhC-CCHHHH
Confidence 98877533221 12 24567788888 766543
No 187
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.95 E-value=7e-05 Score=81.07 Aligned_cols=193 Identities=18% Similarity=0.104 Sum_probs=103.9
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
+++|.+..+++|.+.+...... +.... . .....+-|.|+|++|+|||+||+.+++ .....| +.++.+.
T Consensus 19 di~G~~~~~~~l~~~i~~~~~~--~~~~~-~--~~~~~~~vLl~GppGtGKT~la~aia~--~~~~~~---~~v~~~~-- 86 (322)
T 3eie_A 19 DVAGLEGAKEALKEAVILPVKF--PHLFK-G--NRKPTSGILLYGPPGTGKSYLAKAVAT--EANSTF---FSVSSSD-- 86 (322)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHC--GGGCC-T--TCCCCCEEEEECSSSSCHHHHHHHHHH--HHTCEE---EEEEHHH--
T ss_pred HhcChHHHHHHHHHHHHHHHhC--HHHHh-c--CCCCCCeEEEECCCCCcHHHHHHHHHH--HHCCCE---EEEchHH--
Confidence 6899999999998877311000 00000 0 022346789999999999999999998 333222 2233211
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHH-HHHHHhcCceEEEEecCCCCCCc-----------ccHHHHHhhhc---CCC
Q 001993 259 DDIRIAKAILESLKGSATNAVESETVLK-QLRESIEGKKFFLVLDDVWTEEP-----------QNWEQLLGCLR---CGS 323 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~-~l~~~l~~k~~LlVlDdv~~~~~-----------~~~~~l~~~l~---~~~ 323 (985)
+.... . ...+.... .+...-..++.+|+||++..... .....+...+. ...
T Consensus 87 --------l~~~~-----~-g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 152 (322)
T 3eie_A 87 --------LVSKW-----M-GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDS 152 (322)
T ss_dssp --------HHTTT-----G-GGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSC
T ss_pred --------Hhhcc-----c-chHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccC
Confidence 11110 0 11122222 22223345678999999953211 11233443333 234
Q ss_pred CCcEEEEEcCchhh-HHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCC-hhHHHHH
Q 001993 324 KESRILVTTRNEKV-AIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGL-PLAVKTL 401 (985)
Q Consensus 324 ~gs~iivTtR~~~v-~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl-PLai~~~ 401 (985)
.+..||.||..... ...+...-...+.+...+.++-.+++...+...... .. ......|++.+.|. +-.|..+
T Consensus 153 ~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~--~~---~~~l~~la~~t~g~sg~di~~l 227 (322)
T 3eie_A 153 QGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCV--LT---KEDYRTLGAMTEGYSGSDIAVV 227 (322)
T ss_dssp CCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCC--CC---HHHHHHHHHTTTTCCHHHHHHH
T ss_pred CceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCC--CC---HHHHHHHHHHcCCCCHHHHHHH
Confidence 45667767765432 111111101467788899999999999877543221 11 23466788888874 4455444
Q ss_pred H
Q 001993 402 G 402 (985)
Q Consensus 402 ~ 402 (985)
.
T Consensus 228 ~ 228 (322)
T 3eie_A 228 V 228 (322)
T ss_dssp H
T ss_pred H
Confidence 3
No 188
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.95 E-value=1e-05 Score=89.06 Aligned_cols=84 Identities=18% Similarity=0.173 Sum_probs=55.5
Q ss_pred hccCCcceeecCC---CCCCCC-cccccCCCCCeEecCCCCCccccch-hhcCCCCCcEeeccCcccccccchhhhhccc
Q 001993 600 FDRLTCLRSIDGL---PVGQIP-KGIKKLIHLRYLALGENPWIKELPE-ALCELCNLQTLDVSLCHYLKRLPERIGQLIN 674 (985)
Q Consensus 600 ~~~l~~Lr~L~l~---~~~~lp-~~i~~l~~Lr~L~L~~~~~i~~lP~-~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~ 674 (985)
+..+++|+.|+|+ .+..+| ..|+.|.+|++|+|++|. +..+|+ .|..|++|+.|+|++|. +..+|..+....+
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~ 104 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSFNA-LESLSWKTVQGLS 104 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCSSC-CSCCCSTTTCSCC
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCCCCc-cceeCHHHcccCC
Confidence 5555666666664 344454 457777778888887777 666554 56777788888888776 6777765544444
Q ss_pred cceeecccccc
Q 001993 675 LRHLMNSKEEW 685 (985)
Q Consensus 675 L~~L~l~~n~~ 685 (985)
|+.|++.+|..
T Consensus 105 L~~l~l~~N~~ 115 (347)
T 2ifg_A 105 LQELVLSGNPL 115 (347)
T ss_dssp CCEEECCSSCC
T ss_pred ceEEEeeCCCc
Confidence 77777776543
No 189
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.92 E-value=0.00019 Score=78.57 Aligned_cols=195 Identities=15% Similarity=0.064 Sum_probs=101.8
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
+++|.+..++.|.+.+...-. .+.... . .....+-|.|+|++|+|||+||+.+++ ..... .+.++.+
T Consensus 52 di~G~~~~~~~l~~~v~~~~~--~~~~~~-~--~~~~~~~iLL~GppGtGKT~la~ala~--~~~~~---~~~v~~~--- 118 (355)
T 2qp9_X 52 DVAGLEGAKEALKEAVILPVK--FPHLFK-G--NRKPTSGILLYGPPGTGKSYLAKAVAT--EANST---FFSVSSS--- 118 (355)
T ss_dssp GSCCGGGHHHHHHHHTHHHHH--CGGGGC-S--SCCCCCCEEEECSTTSCHHHHHHHHHH--HHTCE---EEEEEHH---
T ss_pred HhCCHHHHHHHHHHHHHHHHh--CHHHHh-c--CCCCCceEEEECCCCCcHHHHHHHHHH--HhCCC---EEEeeHH---
Confidence 689999999999887742100 000000 0 012334588999999999999999998 33222 2223221
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCCCcc-----------cHHHHHhhhc---CCCC
Q 001993 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTEEPQ-----------NWEQLLGCLR---CGSK 324 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~-----------~~~~l~~~l~---~~~~ 324 (985)
.+ .... .......+...+...-..++.+|+||+++..... ....+...+. ....
T Consensus 119 ---~l----~~~~-----~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~ 186 (355)
T 2qp9_X 119 ---DL----VSKW-----MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQ 186 (355)
T ss_dssp ---HH----HSCC--------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---C
T ss_pred ---HH----hhhh-----cchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCC
Confidence 11 1111 1111222222222333467899999999642210 1233333332 1234
Q ss_pred CcEEEEEcCchh-hHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCC-hhHHHHHH
Q 001993 325 ESRILVTTRNEK-VAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGL-PLAVKTLG 402 (985)
Q Consensus 325 gs~iivTtR~~~-v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl-PLai~~~~ 402 (985)
+..||.||.... +...+...-...+.+...+.++-.+++.......... .. ......|++.+.|. +-.|..+.
T Consensus 187 ~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~--~~---~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 187 GVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSV--LT---KEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp CEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBC--CC---HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCC--CC---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 556666776542 1111111101467788889999999998876543211 11 23467788888884 44455444
Q ss_pred h
Q 001993 403 S 403 (985)
Q Consensus 403 ~ 403 (985)
.
T Consensus 262 ~ 262 (355)
T 2qp9_X 262 K 262 (355)
T ss_dssp H
T ss_pred H
Confidence 3
No 190
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.91 E-value=1.9e-05 Score=77.48 Aligned_cols=103 Identities=17% Similarity=0.231 Sum_probs=58.0
Q ss_pred CEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCc
Q 001993 216 PTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEGK 295 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 295 (985)
...+.|+|++|+||||||+.+++.......+ .+++++ ..++...+.......... ..... +. +
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~-~~~~~~------~~~~~~~~~~~~~~~~~~-----~~~~~----~~-~ 100 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGI-RGYFFD------TKDLIFRLKHLMDEGKDT-----KFLKT----VL-N 100 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHHHHSCC-CCCEEE------HHHHHHHHHHHHHHTCCS-----HHHHH----HH-T
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHcCC-eEEEEE------HHHHHHHHHHHhcCchHH-----HHHHH----hc-C
Confidence 4689999999999999999999842212222 234443 344444444433322111 22221 22 4
Q ss_pred eEEEEecCCCCCCcccHH--HHHhhhcCC-CCCcEEEEEcCch
Q 001993 296 KFFLVLDDVWTEEPQNWE--QLLGCLRCG-SKESRILVTTRNE 335 (985)
Q Consensus 296 ~~LlVlDdv~~~~~~~~~--~l~~~l~~~-~~gs~iivTtR~~ 335 (985)
.-+|||||++....+.|. .+...+... ..|..||+||...
T Consensus 101 ~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 101 SPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp CSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred CCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 678999999743334443 333333322 2466788888743
No 191
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.88 E-value=1.2e-06 Score=84.15 Aligned_cols=91 Identities=8% Similarity=0.055 Sum_probs=61.9
Q ss_pred CCCCccceeeccccccccccccccccCcccccccccceeecccccCCCCC-CCCCCCCCcCeEEecCchhhhhhhcCCCC
Q 001993 882 TAFPRLETLEFLDMEKWEEWDDCEIAGGKTIMPRLRHLSICWSPELKALP-DYILGSTSLDKLLIYYSRHLNNRYNMETG 960 (985)
Q Consensus 882 ~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~lp~L~~L~i~~c~~L~~lp-~~~~~l~~L~~L~i~~c~~l~~~~~~~~~ 960 (985)
..+++|++|+|++|..+++.............++|++|+|++|++++.-- ..+.++++|+.|+|++|+.+++.-....
T Consensus 82 ~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd~gl~~~- 160 (176)
T 3e4g_A 82 EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEKEKIVQ- 160 (176)
T ss_dssp TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCCHHHHHH-
T ss_pred cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCchHHHHH-
Confidence 46899999999999988876542211100013689999999999888621 2345789999999999998876410000
Q ss_pred CCCCCcCCcCceeecC
Q 001993 961 PEWPKISHVPNISFTL 976 (985)
Q Consensus 961 ~~~~~i~h~p~~~~~~ 976 (985)
....++|++.|..
T Consensus 161 ---~L~~~lP~l~V~~ 173 (176)
T 3e4g_A 161 ---AFKTSLPSLELKL 173 (176)
T ss_dssp ---HHHHHCTTCEEEE
T ss_pred ---HHHHHCCCcEEEe
Confidence 0125788887754
No 192
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.87 E-value=0.0002 Score=76.49 Aligned_cols=193 Identities=12% Similarity=0.105 Sum_probs=99.9
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
+++|.+..++.+.+++...... . ...... ......+.|+|++|+||||+|+.+++ ..... .+.++.+.-.
T Consensus 22 ~i~G~~~~~~~l~~~i~~~~~~-~-~~~~~~---~~~~~~vll~Gp~GtGKT~la~~la~--~~~~~---~~~i~~~~l~ 91 (297)
T 3b9p_A 22 DIAGQDVAKQALQEMVILPSVR-P-ELFTGL---RAPAKGLLLFGPPGNGKTLLARAVAT--ECSAT---FLNISAASLT 91 (297)
T ss_dssp GSCCCHHHHHHHHHHTHHHHHC-G-GGSCGG---GCCCSEEEEESSSSSCHHHHHHHHHH--HTTCE---EEEEESTTTS
T ss_pred HhCChHHHHHHHHHHHHhhhhC-H-HHHhcC---CCCCCeEEEECcCCCCHHHHHHHHHH--HhCCC---eEEeeHHHHh
Confidence 7899999999998877431100 0 000000 12346789999999999999999987 33222 2334433211
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHH-HHHHhcCceEEEEecCCCCCCc-----------ccHHHHHhhhc---CC-
Q 001993 259 DDIRIAKAILESLKGSATNAVESETVLKQ-LRESIEGKKFFLVLDDVWTEEP-----------QNWEQLLGCLR---CG- 322 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~-l~~~l~~k~~LlVlDdv~~~~~-----------~~~~~l~~~l~---~~- 322 (985)
... .......... +......++.+|++|++..... .....+...+. ..
T Consensus 92 --------------~~~--~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 155 (297)
T 3b9p_A 92 --------------SKY--VGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNP 155 (297)
T ss_dssp --------------SSS--CSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC---
T ss_pred --------------hcc--cchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccC
Confidence 110 1112222222 2223345778999999953211 11112332222 11
Q ss_pred -CCCcEEEEEcCchh-hHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChh-HHH
Q 001993 323 -SKESRILVTTRNEK-VAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPL-AVK 399 (985)
Q Consensus 323 -~~gs~iivTtR~~~-v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~ 399 (985)
+.+..||.||.... +...+...-...+.+...+.++..+++...+...... .. .+....|++.+.|.+- ++.
T Consensus 156 ~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~--~~---~~~~~~la~~~~g~~~~~l~ 230 (297)
T 3b9p_A 156 DGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSP--LD---TEALRRLAKITDGYSGSDLT 230 (297)
T ss_dssp ---CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCC--SC---HHHHHHHHHHTTTCCHHHHH
T ss_pred CCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCC--CC---HHHHHHHHHHcCCCCHHHHH
Confidence 13456777776543 1111110001356777778888888887765432211 11 2346778888988875 454
Q ss_pred HHH
Q 001993 400 TLG 402 (985)
Q Consensus 400 ~~~ 402 (985)
.+.
T Consensus 231 ~l~ 233 (297)
T 3b9p_A 231 ALA 233 (297)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 193
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.82 E-value=0.0013 Score=71.34 Aligned_cols=178 Identities=17% Similarity=0.217 Sum_probs=96.3
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
.++|.+..++.+...+..+. .. ...+..+.|+|++|+||||||+.+++ .....|. ..+ ....
T Consensus 26 ~~~g~~~~~~~l~~~i~~~~----------~~--~~~~~~~ll~Gp~G~GKTTLa~~ia~--~l~~~~~---~~s-g~~~ 87 (334)
T 1in4_A 26 EFIGQENVKKKLSLALEAAK----------MR--GEVLDHVLLAGPPGLGKTTLAHIIAS--ELQTNIH---VTS-GPVL 87 (334)
T ss_dssp GCCSCHHHHHHHHHHHHHHH----------HH--TCCCCCEEEESSTTSSHHHHHHHHHH--HHTCCEE---EEE-TTTC
T ss_pred HccCcHHHHHHHHHHHHHHH----------hc--CCCCCeEEEECCCCCcHHHHHHHHHH--HhCCCEE---EEe-chHh
Confidence 67898887777776665321 00 12345789999999999999999998 3322211 111 1110
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCCCcccHHHHHhhhcCCC--------C------
Q 001993 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTEEPQNWEQLLGCLRCGS--------K------ 324 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~--------~------ 324 (985)
.....+...+ ..+ .++.++++|++........+.+...+.... .
T Consensus 88 --------------------~~~~~l~~~~-~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~ 145 (334)
T 1in4_A 88 --------------------VKQGDMAAIL-TSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIR 145 (334)
T ss_dssp --------------------CSHHHHHHHH-HHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC------------
T ss_pred --------------------cCHHHHHHHH-HHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCccccccc
Confidence 0111111111 112 234577888885543333444443332211 0
Q ss_pred ----CcEE-EEEcCchhhHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHH
Q 001993 325 ----ESRI-LVTTRNEKVAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVK 399 (985)
Q Consensus 325 ----gs~i-ivTtR~~~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 399 (985)
...+ -.|++...+...+...-...+.+++.+.++-.+++.+.+...... ...+.+..|+++++|.|-.+.
T Consensus 146 ~~l~~~~li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~-----~~~~~~~~ia~~~~G~~R~a~ 220 (334)
T 1in4_A 146 IDIQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVE-----IEDAAAEMIAKRSRGTPRIAI 220 (334)
T ss_dssp ---CCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCC-----BCHHHHHHHHHTSTTCHHHHH
T ss_pred ccCCCeEEEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCC-----cCHHHHHHHHHhcCCChHHHH
Confidence 1112 234444333222221111257899999999999998876432211 113558889999999997554
Q ss_pred HH
Q 001993 400 TL 401 (985)
Q Consensus 400 ~~ 401 (985)
.+
T Consensus 221 ~l 222 (334)
T 1in4_A 221 RL 222 (334)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 194
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.81 E-value=0.00024 Score=79.16 Aligned_cols=193 Identities=13% Similarity=0.099 Sum_probs=99.1
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
+++|.+..++.|.+++....... ...... ....+-|.|+|++|+|||+||+.+++ +.... .+.++.+.-.
T Consensus 116 ~iiG~~~~~~~l~~~~~~~~~~~--~~~~~~---~~~~~~vLL~GppGtGKT~la~aia~--~~~~~---~~~v~~~~l~ 185 (389)
T 3vfd_A 116 DIAGQDLAKQALQEIVILPSLRP--ELFTGL---RAPARGLLLFGPPGNGKTMLAKAVAA--ESNAT---FFNISAASLT 185 (389)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCT--TTSCGG---GCCCSEEEEESSTTSCHHHHHHHHHH--HTTCE---EEEECSCCC-
T ss_pred HhCCHHHHHHHHHHHHHHhccCH--HHhccc---CCCCceEEEECCCCCCHHHHHHHHHH--hhcCc---EEEeeHHHhh
Confidence 69999999999988874211000 000000 12346789999999999999999987 32222 2333332211
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCC-----------CcccHHHHHhhhc---C-CC
Q 001993 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTE-----------EPQNWEQLLGCLR---C-GS 323 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----------~~~~~~~l~~~l~---~-~~ 323 (985)
. . ........+...+...-...+.+|+||+++.. .......+...+. . ..
T Consensus 186 ~--------------~-~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 250 (389)
T 3vfd_A 186 S--------------K-YVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGD 250 (389)
T ss_dssp ---------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC----
T ss_pred c--------------c-ccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCC
Confidence 1 0 00011122222222222456689999999532 0111122222222 1 12
Q ss_pred CCcEEEEEcCchh-hHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChh-HHHHH
Q 001993 324 KESRILVTTRNEK-VAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPL-AVKTL 401 (985)
Q Consensus 324 ~gs~iivTtR~~~-v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~ 401 (985)
....||.||.... +...+...-...+.+...+.++..+++...+...... .. .+....|++.+.|..- +|..+
T Consensus 251 ~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~--l~---~~~~~~la~~~~g~~~~~l~~L 325 (389)
T 3vfd_A 251 DRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSP--LT---QKELAQLARMTDGYSGSDLTAL 325 (389)
T ss_dssp -CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCC--SC---HHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCC--CC---HHHHHHHHHHcCCCCHHHHHHH
Confidence 3345666665432 2211111101357888899999999998876543221 11 2346788888888554 44444
No 195
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.80 E-value=0.00045 Score=77.13 Aligned_cols=316 Identities=12% Similarity=0.033 Sum_probs=173.0
Q ss_pred CCeEEEEEEcCCCCCccCCCccccCCCCceEEEccCcCCcchhhhHHHhhccCCcceeecCC-CCCCCCc-ccccCCCCC
Q 001993 551 WKARHLMITGETRSEMVPFPSMVYDETKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL-PVGQIPK-GIKKLIHLR 628 (985)
Q Consensus 551 ~~~r~l~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~-~~~~lp~-~i~~l~~Lr 628 (985)
..+..+.+... ...+ ....|.++++|+++.+..+.. .+-...|.++..|+.+.+. .+..+.. .+..+..+.
T Consensus 71 ~~L~~i~lp~~-i~~I--~~~aF~~c~~L~~i~lp~~l~----~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~ 143 (394)
T 4fs7_A 71 RKVTEIKIPST-VREI--GEFAFENCSKLEIINIPDSVK----MIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKE 143 (394)
T ss_dssp TTEEEEECCTT-CCEE--CTTTTTTCTTCCEECCCTTCC----EECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSE
T ss_pred CCceEEEeCCC-ccCc--chhHhhCCCCCcEEEeCCCce----EccchhhcccccchhhcccCceeeecceeeecccccc
Confidence 35666666432 2211 255788899999999976532 2223458888888887765 4444432 234443333
Q ss_pred eEecCCCCCcccc-chhhcCCCCCcEeeccCcccccccch-hhhhccccceeecccccccccccCCC-cCCCCCCCCccC
Q 001993 629 YLALGENPWIKEL-PEALCELCNLQTLDVSLCHYLKRLPE-RIGQLINLRHLMNSKEEWSRLSYMPR-GMERLTGLRTLG 705 (985)
Q Consensus 629 ~L~L~~~~~i~~l-P~~i~~L~~L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~n~~~~l~~~p~-~i~~L~~L~~L~ 705 (985)
...... +..+ ...+..+.+|+.+.+..+ +..++. .+..+.+|+.+.+..+ +..++. .+.+...|+.+.
T Consensus 144 ~~~~~~---~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~----~~~I~~~~F~~~~~L~~i~ 214 (394)
T 4fs7_A 144 ITIPEG---VTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN----LKIIRDYCFAECILLENME 214 (394)
T ss_dssp EECCTT---CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT----CCEECTTTTTTCTTCCBCC
T ss_pred cccCcc---ccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCC----ceEeCchhhccccccceee
Confidence 332222 2222 235778889999988754 344543 4567888888887632 233332 356667777665
Q ss_pred ceEecCCCcccccCCchhhhccccCcceeeecccccccCCCCcchhhhcccccccccccEEEEEcCCCCcchhHhhhcCC
Q 001993 706 AFVASGGKSSKACSSLKSLNKLKHLEGSLTLRGLGNERDLGDDNDDEKVDLKSKMKLVDLHLRFDSTTKTKDHRVVLECL 785 (985)
Q Consensus 706 ~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l 785 (985)
+....... +. ..-....|+ .+.+.. .+ .......+..+..|+.+.+..+. .......+
T Consensus 215 ~~~~~~~i---~~-~~~~~~~l~----~i~ip~--~~------~~i~~~~f~~~~~l~~~~~~~~~------~~i~~~~F 272 (394)
T 4fs7_A 215 FPNSLYYL---GD-FALSKTGVK----NIIIPD--SF------TELGKSVFYGCTDLESISIQNNK------LRIGGSLF 272 (394)
T ss_dssp CCTTCCEE---CT-TTTTTCCCC----EEEECT--TC------CEECSSTTTTCSSCCEEEECCTT------CEECSCTT
T ss_pred cCCCceEe---eh-hhcccCCCc----eEEECC--Cc------eecccccccccccceeEEcCCCc------ceeecccc
Confidence 43211100 10 111112232 222211 00 01112345566777777765332 01112234
Q ss_pred CCCCCCCeEEEeeccCCCCCCCChhhhccccccEEeEeccCCCCcCC--CCCCCCccceeeccCCCCceEeCCcccCCch
Q 001993 786 QPPSSLEKLGIYGYAGDTISPTSDWMLSLAKLRVLTLRFCNECECLP--PLGKLPCLETLVLEGMSSVKRLGNGFLGIAE 863 (985)
Q Consensus 786 ~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~--~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~ 863 (985)
..+..|+.+.+.... +. ...+..+.+|+.+.+.++ ++.++ .+.++.+|+.+.|.. .++.++...+
T Consensus 273 ~~~~~l~~~~~~~~~---i~--~~~F~~~~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF---- 339 (394)
T 4fs7_A 273 YNCSGLKKVIYGSVI---VP--EKTFYGCSSLTEVKLLDS--VKFIGEEAFESCTSLVSIDLPY--LVEEIGKRSF---- 339 (394)
T ss_dssp TTCTTCCEEEECSSE---EC--TTTTTTCTTCCEEEECTT--CCEECTTTTTTCTTCCEECCCT--TCCEECTTTT----
T ss_pred ccccccceeccCcee---ec--cccccccccccccccccc--cceechhhhcCCCCCCEEEeCC--cccEEhHHhc----
Confidence 456677777665432 20 223456788999988764 44454 477889999999863 4777776543
Q ss_pred hhhhhhhhhhcccccccCCCCCccceeeccccccccccccccccCcccccccccceeecccccCCCCCCCCCCCCCcCeE
Q 001993 864 DHQARADQAETASSIIRDTAFPRLETLEFLDMEKWEEWDDCEIAGGKTIMPRLRHLSICWSPELKALPDYILGSTSLDKL 943 (985)
Q Consensus 864 ~~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~lp~L~~L~i~~c~~L~~lp~~~~~l~~L~~L 943 (985)
.++.+|+.+.+.. +++.+.. .....+++|+.+.|... ++.+...+.++++|+.+
T Consensus 340 ------------------~~c~~L~~i~lp~--~l~~I~~----~aF~~C~~L~~i~lp~~--~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 340 ------------------RGCTSLSNINFPL--SLRKIGA----NAFQGCINLKKVELPKR--LEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp ------------------TTCTTCCEECCCT--TCCEECT----TTBTTCTTCCEEEEEGG--GGGGGGGBCTTCEEEEE
T ss_pred ------------------cCCCCCCEEEECc--cccEehH----HHhhCCCCCCEEEECCC--CEEhhheecCCCCCcEE
Confidence 2356788887743 2333322 13346788888888543 44444456677777654
No 196
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.80 E-value=0.00013 Score=77.85 Aligned_cols=132 Identities=11% Similarity=0.020 Sum_probs=85.3
Q ss_pred CEEEEEEccCCchHHHHHHHHhcchh-hhccCCceEEEEeCC-CCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc
Q 001993 216 PTIISITGMGGIGKTTLAKLIFNDNE-VRNHFNEKIWVCVSE-PFDDIRIAKAILESLKGSATNAVESETVLKQLRESIE 293 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~~~-~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 293 (985)
.....++|++|+||||+|+.+++... .........++..+. ...... .+++.+.+...+ ..
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~-ir~li~~~~~~p----------------~~ 80 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDD-IRTIKDFLNYSP----------------EL 80 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHH-HHHHHHHHTSCC----------------SS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHH-HHHHHHHHhhcc----------------cc
Confidence 67899999999999999999986310 111123345554332 122222 233333332211 12
Q ss_pred CceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEEEEEcCch-hhHHhhcCcccccccCCCCChHHHHHHHHHHh
Q 001993 294 GKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRILVTTRNE-KVAIAIGTTKFNIIPIELLSDEDCWSIFSQLA 367 (985)
Q Consensus 294 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 367 (985)
+++-++|+|+++.......+.++..+......+.+|++|.++ .+...+... .+++.++++++..+.+.+..
T Consensus 81 ~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 81 YTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp SSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT---SEEEECCCCHHHHHHHHHHH
T ss_pred CCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce---eEeCCCCCHHHHHHHHHHHh
Confidence 456799999998777677888888888777778888777554 233322222 78999999999999988765
No 197
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.79 E-value=0.00045 Score=73.82 Aligned_cols=189 Identities=16% Similarity=0.175 Sum_probs=101.0
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
+++|.+..+++|.+++...-. ....... . +-...+.|.|+|++|+|||+||+.+++ ..... ++.++
T Consensus 16 di~G~~~~~~~l~~~v~~~~~-~~~~~~~-~--~~~~~~~vLL~Gp~GtGKT~la~ala~--~~~~~-----~i~v~--- 81 (301)
T 3cf0_A 16 DIGGLEDVKRELQELVQYPVE-HPDKFLK-F--GMTPSKGVLFYGPPGCGKTLLAKAIAN--ECQAN-----FISIK--- 81 (301)
T ss_dssp GSCSCHHHHHHHHHHHHHHHH-CHHHHHH-H--CCCCCSEEEEECSSSSSHHHHHHHHHH--HTTCE-----EEEEC---
T ss_pred HhCCHHHHHHHHHHHHHHHhh-CHHHHHH-c--CCCCCceEEEECCCCcCHHHHHHHHHH--HhCCC-----EEEEE---
Confidence 689999988888887752100 0000000 0 012346789999999999999999998 33222 22222
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCC--------------CcccHHHHHhhhcC--C
Q 001993 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTE--------------EPQNWEQLLGCLRC--G 322 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--------------~~~~~~~l~~~l~~--~ 322 (985)
...+. ....+.. ...+...+.......+.+|++|++... .......+...+.. .
T Consensus 82 -~~~l~----~~~~g~~-----~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~ 151 (301)
T 3cf0_A 82 -GPELL----TMWFGES-----EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST 151 (301)
T ss_dssp -HHHHH----HHHHTTC-----TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCT
T ss_pred -hHHHH----hhhcCch-----HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccC
Confidence 12222 2222221 112233333334467899999999521 01113444444432 2
Q ss_pred CCCcEEEEEcCchhh-HHh-hcCcc-cccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhH
Q 001993 323 SKESRILVTTRNEKV-AIA-IGTTK-FNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLA 397 (985)
Q Consensus 323 ~~gs~iivTtR~~~v-~~~-~~~~~-~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLa 397 (985)
..+..||.||...+. ... ..... ...+.+...+.++-.++++........ ..... ...+++.+.|.|=+
T Consensus 152 ~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~--~~~~~----~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 152 KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPV--AKDVD----LEFLAKMTNGFSGA 223 (301)
T ss_dssp TSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB--CSSCC----HHHHHHTCSSCCHH
T ss_pred CCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCC--Cccch----HHHHHHHcCCCCHH
Confidence 345677777766532 221 11111 146788899999988888876643321 11111 23566677777643
No 198
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.75 E-value=3.3e-05 Score=77.42 Aligned_cols=100 Identities=23% Similarity=0.298 Sum_probs=54.0
Q ss_pred EEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCce
Q 001993 217 TIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKK 296 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 296 (985)
..+.|+|++|+|||+||+.+++ ........++|+++. .+...+...... .........+ .. .
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~--~~~~~~~~~~~~~~~------~~~~~~~~~~~~-----~~~~~~~~~~----~~-~ 116 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN--ELAKRNVSSLIVYVP------ELFRELKHSLQD-----QTMNEKLDYI----KK-V 116 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH--HHHTTTCCEEEEEHH------HHHHHHHHC--------CCCHHHHHHH----HH-S
T ss_pred CeEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEEhH------HHHHHHHHHhcc-----chHHHHHHHh----cC-C
Confidence 6889999999999999999998 343334456677543 344444332211 1122222222 22 2
Q ss_pred EEEEecCCCCCCcccHH--HHHh-hhcCC-CCCcEEEEEcCc
Q 001993 297 FFLVLDDVWTEEPQNWE--QLLG-CLRCG-SKESRILVTTRN 334 (985)
Q Consensus 297 ~LlVlDdv~~~~~~~~~--~l~~-~l~~~-~~gs~iivTtR~ 334 (985)
-+|||||++......|. .+.. .+... ..+.++|+||..
T Consensus 117 ~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 117 PVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp SEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred CEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 39999999654322221 1221 22111 234568888874
No 199
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.75 E-value=2.3e-05 Score=73.56 Aligned_cols=110 Identities=11% Similarity=0.085 Sum_probs=64.1
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
+++|++..++++.+.+.... ....-|.|+|.+|+|||++|+.+++... ..+.++++.
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~---------------~~~~~vll~G~~GtGKt~lA~~i~~~~~------~~~~~~~~~-- 61 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA---------------KRTSPVFLTGEAGSPFETVARYFHKNGT------PWVSPARVE-- 61 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH---------------TCSSCEEEEEETTCCHHHHHGGGCCTTS------CEECCSSTT--
T ss_pred CceeCCHHHHHHHHHHHHHh---------------CCCCcEEEECCCCccHHHHHHHHHHhCC------CeEEechhh--
Confidence 68999999999988876422 1112478999999999999999987321 112222211
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCCCcccHHHHHhhhcCC-CCCcEEEEEcCc
Q 001993 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTEEPQNWEQLLGCLRCG-SKESRILVTTRN 334 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs~iivTtR~ 334 (985)
... .. ...+.+. .+.-.|+||++..........+...+... ..+.+||.||..
T Consensus 62 -~~~---~~-----------------~~~~~~~--a~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 62 -YLI---DM-----------------PMELLQK--AEGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSY 115 (143)
T ss_dssp -HHH---HC-----------------HHHHHHH--TTTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEE
T ss_pred -CCh---Hh-----------------hhhHHHh--CCCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 100 00 0111111 22357899999876665666666665533 345678887753
No 200
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.73 E-value=0.0014 Score=71.34 Aligned_cols=187 Identities=18% Similarity=0.134 Sum_probs=99.3
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
++.|-++.+++|.+.+.-+-. . +...... +-..++-|.++|++|.|||.||+++++ .....| +.|+.++-
T Consensus 149 dIgGl~~~k~~l~e~v~~Pl~-~-pe~f~~~--gi~~prGvLL~GPPGTGKTllAkAiA~--e~~~~f---~~v~~s~l- 218 (405)
T 4b4t_J 149 MVGGLTKQIKEIKEVIELPVK-H-PELFESL--GIAQPKGVILYGPPGTGKTLLARAVAH--HTDCKF---IRVSGAEL- 218 (405)
T ss_dssp GSCSCHHHHHHHHHHTHHHHH-C-HHHHHHH--TCCCCCCEEEESCSSSSHHHHHHHHHH--HHTCEE---EEEEGGGG-
T ss_pred HhCCHHHHHHHHHHHHHHHHh-C-HHHHHhC--CCCCCCceEEeCCCCCCHHHHHHHHHH--hhCCCc---eEEEhHHh-
Confidence 688999888888776542100 0 0000000 023456789999999999999999998 343333 33433321
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCCC----------cc----cHHHHHhhhc--CC
Q 001993 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTEE----------PQ----NWEQLLGCLR--CG 322 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------~~----~~~~l~~~l~--~~ 322 (985)
... ........+...+...-...+++|++|+++... .. ....++..+. ..
T Consensus 219 -------------~sk-~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 284 (405)
T 4b4t_J 219 -------------VQK-YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFET 284 (405)
T ss_dssp -------------SCS-STTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTC
T ss_pred -------------hcc-ccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCC
Confidence 111 111111222222223334679999999996421 00 1223333333 22
Q ss_pred CCCcEEEEEcCchhh-HHhh-cCc-ccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCCh
Q 001993 323 SKESRILVTTRNEKV-AIAI-GTT-KFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLP 395 (985)
Q Consensus 323 ~~gs~iivTtR~~~v-~~~~-~~~-~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 395 (985)
..+..||.||..++. ...+ ... -...+.+..-+.++-.++|+.+...... ....+ ...|++.+.|.-
T Consensus 285 ~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l--~~dvd----l~~lA~~t~G~S 354 (405)
T 4b4t_J 285 SKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNL--TRGIN----LRKVAEKMNGCS 354 (405)
T ss_dssp CCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBC--CSSCC----HHHHHHHCCSCC
T ss_pred CCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCC--CccCC----HHHHHHHCCCCC
Confidence 345566777765542 2222 111 1157888888888888888876643321 11112 456778887754
No 201
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.73 E-value=4.2e-06 Score=80.33 Aligned_cols=92 Identities=11% Similarity=0.021 Sum_probs=57.2
Q ss_pred ccccEEeEeccCCCC--cCCCCCCCCccceeeccCCCCceEeCCcccCCchhhhhhhhhhhcccccccCCCCCccceeec
Q 001993 815 AKLRVLTLRFCNECE--CLPPLGKLPCLETLVLEGMSSVKRLGNGFLGIAEDHQARADQAETASSIIRDTAFPRLETLEF 892 (985)
Q Consensus 815 ~~L~~L~L~~~~~~~--~l~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fp~L~~L~l 892 (985)
.+|+.|+|++|. ++ .+..+..+++|+.|+|++|..++.-+-..+... ....++|++|+|
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~------------------~~~~~~L~~L~L 121 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQL------------------ENLQKSMLEMEI 121 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTC------------------HHHHHHCCEEEE
T ss_pred ceEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhc------------------ccccCCCCEEEc
Confidence 357777777775 33 244566788888888888875543221111000 001357888888
Q ss_pred cccccccccccccccCcccccccccceeecccccCCC
Q 001993 893 LDMEKWEEWDDCEIAGGKTIMPRLRHLSICWSPELKA 929 (985)
Q Consensus 893 ~~~~~L~~~~~~~~~~~~~~lp~L~~L~i~~c~~L~~ 929 (985)
++|+++++-... ....+|+|++|+|++|+.++.
T Consensus 122 s~C~~ITD~Gl~----~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 122 ISCGNVTDKGII----ALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp ESCTTCCHHHHH----HGGGCTTCCEEEEESCTTCCC
T ss_pred CCCCcCCHHHHH----HHhcCCCCCEEECCCCCCCCc
Confidence 888877654332 123578888888888888775
No 202
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.72 E-value=0.00039 Score=78.64 Aligned_cols=195 Identities=15% Similarity=0.099 Sum_probs=101.0
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
+++|.+..++.|.+.+...-. ....... .....+-|.|+|++|+|||+||+.+++. . ...-++.++...
T Consensus 135 di~G~~~~k~~l~~~v~~p~~---~~~~~~~--~~~~~~~vLL~GppGtGKT~lA~aia~~--~----~~~~~~~v~~~~ 203 (444)
T 2zan_A 135 DVAGLEGAKEALKEAVILPIK---FPHLFTG--KRTPWRGILLFGPPGTGKSYLAKAVATE--A----NNSTFFSISSSD 203 (444)
T ss_dssp GSCSCHHHHHHHHHHHTHHHH---CTTTTSG--GGCCCSEEEEECSTTSSHHHHHHHHHHH--C----CSSEEEEECCC-
T ss_pred HhcCHHHHHHHHHHHHHHHhh---CHHHhhc--cCCCCceEEEECCCCCCHHHHHHHHHHH--c----CCCCEEEEeHHH
Confidence 689999999999887732100 0000000 0123467899999999999999999973 2 112233333211
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCCC-------cc----cHHHHHhhhcC---CCC
Q 001993 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTEE-------PQ----NWEQLLGCLRC---GSK 324 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-------~~----~~~~l~~~l~~---~~~ 324 (985)
+ .....+. .......+ +...-..++.+|+||+++... .. ....+...+.. ...
T Consensus 204 ----l----~~~~~g~--~~~~~~~~---f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~ 270 (444)
T 2zan_A 204 ----L----VSKWLGE--SEKLVKNL---FQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDND 270 (444)
T ss_dssp ------------------CCCTHHHH---HHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCS
T ss_pred ----H----Hhhhcch--HHHHHHHH---HHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCC
Confidence 1 1111111 11112222 222224578899999996431 01 11223333322 234
Q ss_pred CcEEEEEcCchhh-HHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCC-hhHHHHHH
Q 001993 325 ESRILVTTRNEKV-AIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGL-PLAVKTLG 402 (985)
Q Consensus 325 gs~iivTtR~~~v-~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl-PLai~~~~ 402 (985)
+..||.||..... ...+...-...+.+...+.++-.++|..+...... ... ......|++.+.|. +-.|..+.
T Consensus 271 ~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~--~l~---~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 271 GILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQN--SLT---EADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp SCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCE--ECC---HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCC--CCC---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 5667777765432 11111110146778888888888888887643321 111 23456788888884 44554443
No 203
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.66 E-value=0.00017 Score=77.75 Aligned_cols=139 Identities=17% Similarity=0.246 Sum_probs=76.4
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
.++|.+..++.+...+.....+ ...+......+.|+|++|+|||++|+.++. .....-...+.+.++...
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~--------~~~~~~~~~~~ll~G~~GtGKt~la~~la~--~~~~~~~~~~~~~~~~~~ 87 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAG--------LKDPNRPIGSFLFLGPTGVGKTELAKTLAA--TLFDTEEAMIRIDMTEYM 87 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHT--------CSCTTSCSEEEEEESCSSSSHHHHHHHHHH--HHHSCGGGEEEEEGGGCC
T ss_pred hcCCHHHHHHHHHHHHHHHhcC--------CCCCCCCceEEEEECCCCcCHHHHHHHHHH--HHcCCCcceEEeeccccc
Confidence 5789999988888887643100 000122346899999999999999999997 332222234555554432
Q ss_pred CHHHHHHHHHHHhcCCCC--CCCCHHHHHHHHHHHhcCceEEEEecCCCCCCcccHHHHHhhhcCCC-----------CC
Q 001993 259 DDIRIAKAILESLKGSAT--NAVESETVLKQLRESIEGKKFFLVLDDVWTEEPQNWEQLLGCLRCGS-----------KE 325 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~g 325 (985)
... ....+ ++.... .......+...+. ....-+|+||++..........+...+.... ..
T Consensus 88 ~~~-~~~~l---~g~~~~~~~~~~~~~~~~~~~---~~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~ 160 (311)
T 4fcw_A 88 EKH-AVSRL---IGAPPGYVGYEEGGQLTEAVR---RRPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRN 160 (311)
T ss_dssp STT-HHHHH---HCCCTTSTTTTTCCHHHHHHH---HCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTT
T ss_pred ccc-cHHHh---cCCCCccccccccchHHHHHH---hCCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCC
Confidence 221 11111 111110 1111112222221 2345799999997766666677776664321 23
Q ss_pred cEEEEEcCc
Q 001993 326 SRILVTTRN 334 (985)
Q Consensus 326 s~iivTtR~ 334 (985)
..||.||..
T Consensus 161 ~iiI~ttn~ 169 (311)
T 4fcw_A 161 TVIIMTSNL 169 (311)
T ss_dssp EEEEEEEST
T ss_pred cEEEEeccc
Confidence 347777765
No 204
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.64 E-value=0.00013 Score=89.92 Aligned_cols=152 Identities=18% Similarity=0.245 Sum_probs=80.8
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhcc-----C-C-ceEE
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNH-----F-N-EKIW 251 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-----f-~-~~~w 251 (985)
.++||+.+++++++.+.... ..-+.|+|++|+||||+|+.+++. .... . . .+++
T Consensus 171 ~viGr~~~i~~l~~~l~~~~-----------------~~~vlL~G~pG~GKT~la~~la~~--l~~~~~p~~l~~~~~~~ 231 (854)
T 1qvr_A 171 PVIGRDEEIRRVIQILLRRT-----------------KNNPVLIGEPGVGKTAIVEGLAQR--IVKGDVPEGLKGKRIVS 231 (854)
T ss_dssp CCCSCHHHHHHHHHHHHCSS-----------------CCCCEEEECTTSCHHHHHHHHHHH--HHHTCSCTTSTTCEEEE
T ss_pred ccCCcHHHHHHHHHHHhcCC-----------------CCceEEEcCCCCCHHHHHHHHHHH--HhcCCCchhhcCCeEEE
Confidence 58999999999999997432 234689999999999999999983 3211 1 1 2334
Q ss_pred EEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh-c-CceEEEEecCCCCCC--------cccHHHHHhhhcC
Q 001993 252 VCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESI-E-GKKFFLVLDDVWTEE--------PQNWEQLLGCLRC 321 (985)
Q Consensus 252 v~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~-~k~~LlVlDdv~~~~--------~~~~~~l~~~l~~ 321 (985)
++++.-. .+.... .+.......+.+.+ . +++.+|++|++.... .+..+.+...+..
T Consensus 232 l~~~~l~-------------~g~~~~-g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~ 297 (854)
T 1qvr_A 232 LQMGSLL-------------AGAKYR-GEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR 297 (854)
T ss_dssp ECC-------------------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHT
T ss_pred eehHHhh-------------ccCccc-hHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhC
Confidence 4332210 000011 12222222222222 2 368999999996432 1111224444432
Q ss_pred CCCCcEEEEEcCchhhH-----HhhcCcccccccCCCCChHHHHHHHHHH
Q 001993 322 GSKESRILVTTRNEKVA-----IAIGTTKFNIIPIELLSDEDCWSIFSQL 366 (985)
Q Consensus 322 ~~~gs~iivTtR~~~v~-----~~~~~~~~~~~~l~~L~~~e~~~Lf~~~ 366 (985)
.+..+|.+|...... ..+.. .+..+.+.+++.++..+++...
T Consensus 298 --~~i~~I~at~~~~~~~~~~d~aL~r-Rf~~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 298 --GELRLIGATTLDEYREIEKDPALER-RFQPVYVDEPTVEETISILRGL 344 (854)
T ss_dssp --TCCCEEEEECHHHHHHHTTCTTTCS-CCCCEEECCCCHHHHHHHHHHH
T ss_pred --CCeEEEEecCchHHhhhccCHHHHh-CCceEEeCCCCHHHHHHHHHhh
Confidence 233466555544321 11111 2356889999999999988754
No 205
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.63 E-value=0.00013 Score=78.03 Aligned_cols=158 Identities=15% Similarity=0.154 Sum_probs=85.4
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
.++|+...+.++.+.+.... .....|.|+|.+|+|||++|+.+++... +... ..+.++++.-.
T Consensus 3 ~iig~s~~~~~~~~~~~~~a---------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~-~~~~-~~v~v~~~~~~ 65 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVA---------------PSDATVLIHGDSGTGKELVARALHACSA-RSDR-PLVTLNCAALN 65 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHC---------------STTSCEEEESCTTSCHHHHHHHHHHHSS-CSSS-CCCEEECSSCC
T ss_pred CcEECCHHHHHHHHHHHHHh---------------CCCCcEEEECCCCchHHHHHHHHHHhCc-ccCC-CeEEEeCCCCC
Confidence 68999999999988886533 1223578999999999999999987311 1111 22345554322
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHH--HHHHHHHHHhcCceEEEEecCCCCCCcccHHHHHhhhcCCC-----------CC
Q 001993 259 DDIRIAKAILESLKGSATNAVESE--TVLKQLRESIEGKKFFLVLDDVWTEEPQNWEQLLGCLRCGS-----------KE 325 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~--~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~g 325 (985)
..++.. .+.+......... .....+.. ...-.|+||++..........+...+.... ..
T Consensus 66 --~~l~~~---~lfg~~~g~~tg~~~~~~g~~~~---a~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~ 137 (304)
T 1ojl_A 66 --ESLLES---ELFGHEKGAFTGADKRREGRFVE---ADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVD 137 (304)
T ss_dssp --HHHHHH---HHTCCCSSCCC---CCCCCHHHH---HTTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCC
T ss_pred --hHHHHH---HhcCccccccCchhhhhcCHHHh---cCCCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCC
Confidence 222222 2222211100000 00001111 123469999998766656666666665331 34
Q ss_pred cEEEEEcCchh------------hHHhhcCcccccccCCCCC--hHHHHHHHH
Q 001993 326 SRILVTTRNEK------------VAIAIGTTKFNIIPIELLS--DEDCWSIFS 364 (985)
Q Consensus 326 s~iivTtR~~~------------v~~~~~~~~~~~~~l~~L~--~~e~~~Lf~ 364 (985)
.+||.||...- +...+. ...+.+.+|. .+|...++.
T Consensus 138 ~riI~atn~~l~~~v~~g~fr~~L~~Rl~---~~~i~lPpL~eR~edi~~l~~ 187 (304)
T 1ojl_A 138 VRLIAATHRDLAEEVSAGRFRQDLYYRLN---VVAIEMPSLRQRREDIPLLAD 187 (304)
T ss_dssp CEEEEEESSCHHHHHHHTSSCHHHHHHHS---SEEEECCCSGGGGGGHHHHHH
T ss_pred eEEEEecCccHHHHHHhCCcHHHHHhhcC---eeEEeccCHHHhHhhHHHHHH
Confidence 67888877531 111111 1346788887 455555444
No 206
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.62 E-value=0.00023 Score=80.98 Aligned_cols=193 Identities=16% Similarity=0.165 Sum_probs=102.3
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
+++|.+..+++|.+++...-.. +..... . +.....-|.|+|++|+|||++|+.+++ ..... .+.++++.
T Consensus 205 ~i~G~~~~~~~l~~~i~~~l~~-~~~~~~-~--g~~~~~~vLL~GppGtGKT~lAraia~--~~~~~---fv~vn~~~-- 273 (489)
T 3hu3_A 205 DIGGCRKQLAQIKEMVELPLRH-PALFKA-I--GVKPPRGILLYGPPGTGKTLIARAVAN--ETGAF---FFLINGPE-- 273 (489)
T ss_dssp GCCSCHHHHHHHHHHTHHHHHC-HHHHHH-H--TCCCCCEEEEECSTTSSHHHHHHHHHH--HCSSE---EEEEEHHH--
T ss_pred HcCCHHHHHHHHHHHHHHHhhC-HHHHHh-c--CCCCCCcEEEECcCCCCHHHHHHHHHH--HhCCC---EEEEEchH--
Confidence 5899999999998887532000 000000 0 012345689999999999999999987 33222 23333211
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCC--------C---cccHHHHHhhhc--CCCCC
Q 001993 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTE--------E---PQNWEQLLGCLR--CGSKE 325 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--------~---~~~~~~l~~~l~--~~~~g 325 (985)
+...+ .......+...+.....+++.+|+||+++.. . ......+...+. ....+
T Consensus 274 --------l~~~~-----~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~ 340 (489)
T 3hu3_A 274 --------IMSKL-----AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH 340 (489)
T ss_dssp --------HHTSC-----TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSC
T ss_pred --------hhhhh-----cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCc
Confidence 11111 1111222333344444577889999998311 0 012233444443 22334
Q ss_pred cEEEEEcCchh-hHHhhcC--cccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCC-hhHHHHH
Q 001993 326 SRILVTTRNEK-VAIAIGT--TKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGL-PLAVKTL 401 (985)
Q Consensus 326 s~iivTtR~~~-v~~~~~~--~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl-PLai~~~ 401 (985)
..||.||.... +...+.. .-...+.+...+.++-.++|..++..... ..... ..++++.+.|. +-.|..+
T Consensus 341 v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l--~~~~~----l~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL--ADDVD----LEQVANETHGHVGADLAAL 414 (489)
T ss_dssp EEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCB--CTTCC----HHHHHHTCTTCCHHHHHHH
T ss_pred eEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCC--cchhh----HHHHHHHccCCcHHHHHHH
Confidence 56666776553 2222211 11146889999999999999887643321 11112 35567777765 4444433
No 207
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.61 E-value=9.6e-05 Score=77.59 Aligned_cols=131 Identities=17% Similarity=0.162 Sum_probs=68.9
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
.++|.+..+.++.+.+.... .....|.|+|.+|+|||++|+.+++.. ...-...+.++++.-
T Consensus 7 ~~ig~~~~~~~~~~~~~~~~---------------~~~~~vll~G~~GtGKt~la~~i~~~~--~~~~~~~~~v~~~~~- 68 (265)
T 2bjv_A 7 NLLGEANSFLEVLEQVSHLA---------------PLDKPVLIIGERGTGKELIASRLHYLS--SRWQGPFISLNCAAL- 68 (265)
T ss_dssp ---CCCHHHHHHHHHHHHHT---------------TSCSCEEEECCTTSCHHHHHHHHHHTS--TTTTSCEEEEEGGGS-
T ss_pred cceeCCHHHHHHHHHHHHHh---------------CCCCCEEEECCCCCcHHHHHHHHHHhc--CccCCCeEEEecCCC-
Confidence 58899999999888776432 112457899999999999999998732 111112344555443
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCH--HHHHHHHHHHhcCceEEEEecCCCCCCcccHHHHHhhhcCC-----------CCC
Q 001993 259 DDIRIAKAILESLKGSATNAVES--ETVLKQLRESIEGKKFFLVLDDVWTEEPQNWEQLLGCLRCG-----------SKE 325 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~--~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~g 325 (985)
.. ..+.. .+.+........ ......+. ....-+|+||++..........+...+..+ ...
T Consensus 69 ~~-~~~~~---~l~g~~~~~~~g~~~~~~~~l~---~a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~ 141 (265)
T 2bjv_A 69 NE-NLLDS---ELFGHEAGAFTGAQKRHPGRFE---RADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVN 141 (265)
T ss_dssp CH-HHHHH---HHHCCC---------CCCCHHH---HTTTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECC
T ss_pred Ch-hHHHH---HhcCCcccccccccccccchhh---hcCCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCC
Confidence 22 22221 121211000000 00000011 123458999999766555555666555422 134
Q ss_pred cEEEEEcCc
Q 001993 326 SRILVTTRN 334 (985)
Q Consensus 326 s~iivTtR~ 334 (985)
.+||.||..
T Consensus 142 ~~iI~atn~ 150 (265)
T 2bjv_A 142 VRLVCATNA 150 (265)
T ss_dssp CEEEEEESS
T ss_pred eEEEEecCc
Confidence 578888775
No 208
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.60 E-value=0.00017 Score=82.15 Aligned_cols=146 Identities=17% Similarity=0.205 Sum_probs=79.8
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccC------Cc-eEE
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHF------NE-KIW 251 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f------~~-~~w 251 (985)
.++||+.++++++..+.... ..-+.|+|++|+|||++|+.++. .+...+ .. .+.
T Consensus 181 ~iiGr~~~i~~l~~~l~r~~-----------------~~~~LL~G~pG~GKT~la~~la~--~l~~~~~p~~l~~~~~~~ 241 (468)
T 3pxg_A 181 PVIGRSKEIQRVIEVLSRRT-----------------KNNPVLIGEPGVGKTAIAEGLAQ--QIINNEVPEILRDKRVMT 241 (468)
T ss_dssp CCCCCHHHHHHHHHHHHCSS-----------------SCEEEEESCTTTTTHHHHHHHHH--HHHSSCSCTTTSSCCEEC
T ss_pred CccCcHHHHHHHHHHHhccC-----------------CCCeEEECCCCCCHHHHHHHHHH--HHHhCCCChhhcCCeEEE
Confidence 58999999999999997432 23468999999999999999987 332211 11 122
Q ss_pred EEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEEEEE
Q 001993 252 VCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRILVT 331 (985)
Q Consensus 252 v~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivT 331 (985)
++++ ....+. ....... .+...-..++.+|++|. ..+....+...+.. ...++|.+
T Consensus 242 l~~~-------------~~~~g~--~e~~~~~---~~~~~~~~~~~iLfiD~----~~~a~~~L~~~L~~--g~v~vI~a 297 (468)
T 3pxg_A 242 LDMG-------------TKYRGE--FEDRLKK---VMDEIRQAGNIILFIDA----AIDASNILKPSLAR--GELQCIGA 297 (468)
T ss_dssp C-------------------------CTTHHH---HHHHHHTCCCCEEEECC------------CCCTTS--SSCEEEEE
T ss_pred eeCC-------------ccccch--HHHHHHH---HHHHHHhcCCeEEEEeC----chhHHHHHHHhhcC--CCEEEEec
Confidence 2222 000000 0111222 22223345688999991 11222334333332 23466666
Q ss_pred cCchhhHHhhcC-----cccccccCCCCChHHHHHHHHHHh
Q 001993 332 TRNEKVAIAIGT-----TKFNIIPIELLSDEDCWSIFSQLA 367 (985)
Q Consensus 332 tR~~~v~~~~~~-----~~~~~~~l~~L~~~e~~~Lf~~~~ 367 (985)
|........... ..+..+.+.+.+.++..+++....
T Consensus 298 t~~~e~~~~~~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 298 TTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp CCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred CCHHHHHHHhhcCHHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 665542211110 123578999999999999998754
No 209
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.58 E-value=0.001 Score=73.85 Aligned_cols=187 Identities=16% Similarity=0.153 Sum_probs=99.0
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
++.|-++.+++|.+.+.-.-. . +.... ..+-..++-|.++|++|.|||+||+++++ .....| +.++.+.-.
T Consensus 182 digGl~~~k~~l~e~v~~pl~-~-p~~f~--~~g~~~prGvLL~GPPGtGKTllAkAiA~--e~~~~~---~~v~~s~l~ 252 (437)
T 4b4t_L 182 GIGGLTEQIRELREVIELPLK-N-PEIFQ--RVGIKPPKGVLLYGPPGTGKTLLAKAVAA--TIGANF---IFSPASGIV 252 (437)
T ss_dssp GGCSCHHHHHHHHHHHHHHHH-C-HHHHH--HHCCCCCCEEEEESCTTSSHHHHHHHHHH--HHTCEE---EEEEGGGTC
T ss_pred HhCChHHHHHHHHHHHHHHHh-C-HHHHH--hCCCCCCCeEEEECCCCCcHHHHHHHHHH--HhCCCE---EEEehhhhc
Confidence 688999888888776642100 0 00000 00023457899999999999999999998 333332 334433211
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCCC----------cc----cHHHHHhhhc--CC
Q 001993 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTEE----------PQ----NWEQLLGCLR--CG 322 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------~~----~~~~l~~~l~--~~ 322 (985)
.. ........+...+...-...+++|++|+++..- .. ....++..+. ..
T Consensus 253 --------------sk-~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 317 (437)
T 4b4t_L 253 --------------DK-YIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDN 317 (437)
T ss_dssp --------------CS-SSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSC
T ss_pred --------------cc-cchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccC
Confidence 11 111111122222223334679999999995310 01 1223444343 22
Q ss_pred CCCcEEEEEcCchhhH-Hhh-cCc-ccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCCh
Q 001993 323 SKESRILVTTRNEKVA-IAI-GTT-KFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLP 395 (985)
Q Consensus 323 ~~gs~iivTtR~~~v~-~~~-~~~-~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 395 (985)
..+..||.||-.++.. ..+ ... -...+.+..-+.++-.++|+.+....... ...+ ...|++.+.|+-
T Consensus 318 ~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~--~d~d----l~~lA~~t~G~s 387 (437)
T 4b4t_L 318 LGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKT--GEFD----FEAAVKMSDGFN 387 (437)
T ss_dssp TTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBC--SCCC----HHHHHHTCCSCC
T ss_pred CCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCC--cccC----HHHHHHhCCCCC
Confidence 3455777787665432 222 111 01467888778888888888766443211 1112 356777887754
No 210
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.55 E-value=0.0011 Score=73.25 Aligned_cols=187 Identities=18% Similarity=0.135 Sum_probs=98.0
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
++.|-++.+++|.+.+.-.-. .+ ...... +-..++-|.++|++|.|||+||+.+++ +....| +.+..+.
T Consensus 210 DIgGl~~~k~~L~e~V~~pl~-~p-e~f~~~--Gi~pprGILLyGPPGTGKTlLAkAiA~--e~~~~f---i~vs~s~-- 278 (467)
T 4b4t_H 210 DVGGCKDQIEKLREVVELPLL-SP-ERFATL--GIDPPKGILLYGPPGTGKTLCARAVAN--RTDATF---IRVIGSE-- 278 (467)
T ss_dssp SCTTCHHHHHHHHHHTHHHHH-CH-HHHHHH--TCCCCSEEEECSCTTSSHHHHHHHHHH--HHTCEE---EEEEGGG--
T ss_pred HhccHHHHHHHHHHHHHHHhc-CH-HHHHHC--CCCCCCceEeeCCCCCcHHHHHHHHHh--ccCCCe---EEEEhHH--
Confidence 588999888888776531000 00 000000 023567889999999999999999998 343332 3333332
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCCC-------c---c----cHHHHHhhhcC--C
Q 001993 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTEE-------P---Q----NWEQLLGCLRC--G 322 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-------~---~----~~~~l~~~l~~--~ 322 (985)
+... ........+...+...-...+++|++|+++... . . ....++..+.. .
T Consensus 279 ------------L~sk-~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 345 (467)
T 4b4t_H 279 ------------LVQK-YVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDP 345 (467)
T ss_dssp ------------GCCC-SSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCC
T ss_pred ------------hhcc-cCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCC
Confidence 1111 111111222222333335678999999996321 0 0 11223333332 2
Q ss_pred CCCcEEEEEcCchh-hHHhhc-Cc-ccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCCh
Q 001993 323 SKESRILVTTRNEK-VAIAIG-TT-KFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLP 395 (985)
Q Consensus 323 ~~gs~iivTtR~~~-v~~~~~-~~-~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 395 (985)
..+..||.||-..+ +...+- .. -...+.+..-+.++-.++|+.+...... ...-+ ...|++.+.|.-
T Consensus 346 ~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l--~~dvd----l~~LA~~T~GfS 415 (467)
T 4b4t_H 346 RGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSV--ERGIR----WELISRLCPNST 415 (467)
T ss_dssp TTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCB--CSSCC----HHHHHHHCCSCC
T ss_pred CCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCC--CCCCC----HHHHHHHCCCCC
Confidence 33445666775543 222221 11 1156888888888888888877643321 11112 356777887753
No 211
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.55 E-value=7.6e-05 Score=70.35 Aligned_cols=86 Identities=13% Similarity=0.081 Sum_probs=51.5
Q ss_pred EEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCce
Q 001993 217 TIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKK 296 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 296 (985)
..++|+|..|+|||||++.+++..... . ..++++...+-... .+..+.
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~~~-g-~~~~~~~~~~~~~~------------------------------~~~~~~ 84 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQALEA-G-KNAAYIDAASMPLT------------------------------DAAFEA 84 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHHTT-T-CCEEEEETTTSCCC------------------------------GGGGGC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhc-C-CcEEEEcHHHhhHH------------------------------HHHhCC
Confidence 489999999999999999999842211 1 12566665432211 112356
Q ss_pred EEEEecCCCCCCcccHHHHHhhhcCC-CCCc-EEEEEcCc
Q 001993 297 FFLVLDDVWTEEPQNWEQLLGCLRCG-SKES-RILVTTRN 334 (985)
Q Consensus 297 ~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs-~iivTtR~ 334 (985)
-+|||||+.......-+.+...+... ..|. .||+||+.
T Consensus 85 ~lLilDE~~~~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 85 EYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp SEEEEESTTCCCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred CEEEEeCccccChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 68999999764433333344433311 1233 58888874
No 212
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.55 E-value=0.00054 Score=73.66 Aligned_cols=162 Identities=15% Similarity=0.135 Sum_probs=84.6
Q ss_pred ceecchhhHHHHHHHHhcC--CCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCC
Q 001993 179 EIRGRNHLQNKVASLLMSG--SESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSE 256 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~ 256 (985)
.++|.+..++.+...+... ...-.... .+......+.|+|++|+|||++|+.+++. ... ..+.++++.
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~-----~~~~~~~~vll~G~~GtGKT~la~~la~~--l~~---~~~~i~~~~ 85 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPL-----RHEVTPKNILMIGPTGVGKTEIARRLAKL--ANA---PFIKVEATK 85 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHH-----HHHCCCCCEEEECCTTSSHHHHHHHHHHH--HTC---CEEEEEGGG
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccc-----cccCCCceEEEECCCCCCHHHHHHHHHHH--hCC---CEEEEcchh
Confidence 6899999999998877641 00000000 00012356789999999999999999873 322 233444433
Q ss_pred CCC-------HHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCCCccc------------HHHHHh
Q 001993 257 PFD-------DIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTEEPQN------------WEQLLG 317 (985)
Q Consensus 257 ~~~-------~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~------------~~~l~~ 317 (985)
..+ ....+..+.....+ .+.. .+.+.+|+||+++...... ...+..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~--~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~ 150 (310)
T 1ofh_A 86 FTEVGYVGKEVDSIIRDLTDSAGG-------------AIDA--VEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLP 150 (310)
T ss_dssp GSSCCSGGGSTTHHHHHHHHTTTT-------------CHHH--HHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHH
T ss_pred cccCCccCccHHHHHHHHHHHhhH-------------HHhh--ccCCCEEEEEChhhcCccccccccchhHHHHHHHHHH
Confidence 211 11112222211100 0000 1246799999996533222 455555
Q ss_pred hhcCC----------CCCcEEEEEcC----ch-hhHHhhcCcccccccCCCCChHHHHHHHHH
Q 001993 318 CLRCG----------SKESRILVTTR----NE-KVAIAIGTTKFNIIPIELLSDEDCWSIFSQ 365 (985)
Q Consensus 318 ~l~~~----------~~gs~iivTtR----~~-~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~ 365 (985)
.+... ..+..+|.|+. .. .+...+...-...+.+.+++.++..+++.+
T Consensus 151 ~le~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~ 213 (310)
T 1ofh_A 151 LVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTE 213 (310)
T ss_dssp HHHCCEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHS
T ss_pred HhcCCeEecccccccCCcEEEEEcCCcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHHh
Confidence 55432 12445666642 11 111111110013689999999998888874
No 213
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.55 E-value=0.0013 Score=68.34 Aligned_cols=191 Identities=16% Similarity=0.151 Sum_probs=94.9
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
+++|.+..++++.+.+..-..+... ...+....+-+.|+|++|+||||||+.+++. .... .+.++.+.-.
T Consensus 13 ~i~G~~~~~~~l~~~~~~~~~~~~~-----~~~~~~~~~~vll~G~~GtGKT~la~~la~~--~~~~---~~~i~~~~~~ 82 (257)
T 1lv7_A 13 DVAGCDEAKEEVAELVEYLREPSRF-----QKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE--AKVP---FFTISGSDFV 82 (257)
T ss_dssp GSCSCHHHHHHTHHHHHHHHCGGGC----------CCCCEEEEECCTTSCHHHHHHHHHHH--HTCC---EEEECSCSST
T ss_pred HhcCcHHHHHHHHHHHHHHhCHHHH-----HHcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCC---EEEEeHHHHH
Confidence 6899998877776554311000000 0000112345889999999999999999973 3222 2333322210
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCCC----------c----ccHHHHHhhhcC--C
Q 001993 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTEE----------P----QNWEQLLGCLRC--G 322 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------~----~~~~~l~~~l~~--~ 322 (985)
+ . ........+...+.......+.++++|+++... . .....+...+.. .
T Consensus 83 ~--------------~-~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 147 (257)
T 1lv7_A 83 E--------------M-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG 147 (257)
T ss_dssp T--------------S-CCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCS
T ss_pred H--------------H-hhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCccc
Confidence 0 0 011122333333444444567899999983110 0 112233333321 2
Q ss_pred CCCcEEEEEcCchh-hHHhhcC-cc-cccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCC-ChhHH
Q 001993 323 SKESRILVTTRNEK-VAIAIGT-TK-FNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKG-LPLAV 398 (985)
Q Consensus 323 ~~gs~iivTtR~~~-v~~~~~~-~~-~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G-lPLai 398 (985)
..+..||.||...+ +...... .. ...+.+...+.++-.+++..+...... ..... ...+++.+.| .+--|
T Consensus 148 ~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l--~~~~~----~~~la~~~~G~~~~dl 221 (257)
T 1lv7_A 148 NEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPL--APDID----AAIIARGTPGFSGADL 221 (257)
T ss_dssp SSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB--CTTCC----HHHHHHTCTTCCHHHH
T ss_pred CCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCC--Ccccc----HHHHHHHcCCCCHHHH
Confidence 34456777776553 2222211 10 135677777888888888776533211 11111 3456777777 55544
Q ss_pred HH
Q 001993 399 KT 400 (985)
Q Consensus 399 ~~ 400 (985)
..
T Consensus 222 ~~ 223 (257)
T 1lv7_A 222 AN 223 (257)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 214
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.45 E-value=1.3e-05 Score=88.58 Aligned_cols=12 Identities=17% Similarity=0.083 Sum_probs=5.8
Q ss_pred CCceEEEccCcC
Q 001993 577 TKLRSLVLDQRL 588 (985)
Q Consensus 577 ~~Lr~L~l~~~~ 588 (985)
++|+.|++++|.
T Consensus 101 ~~L~~L~Ls~n~ 112 (372)
T 3un9_A 101 HALDEVNLASCQ 112 (372)
T ss_dssp SCEEEEECTTCC
T ss_pred CCceEEEecCCC
Confidence 345555555443
No 215
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.45 E-value=2.7e-05 Score=86.10 Aligned_cols=132 Identities=14% Similarity=0.029 Sum_probs=81.4
Q ss_pred CCeEEEEEEcCCCCCccCCCccccCCCCceEEEccCcCCcch-hhhHHHhh-ccCCcceeecCCCC--C-----CCCccc
Q 001993 551 WKARHLMITGETRSEMVPFPSMVYDETKLRSLVLDQRLSFKP-RIALSKLF-DRLTCLRSIDGLPV--G-----QIPKGI 621 (985)
Q Consensus 551 ~~~r~l~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~-~~~~~~~~-~~l~~Lr~L~l~~~--~-----~lp~~i 621 (985)
..++.+.+.++.+.... .......+++|+.|++++|..... ...+...+ ...+.|+.|+++.. . .++..+
T Consensus 101 ~~L~~L~Ls~n~l~~~~-~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L 179 (372)
T 3un9_A 101 HALDEVNLASCQLDPAG-LRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL 179 (372)
T ss_dssp SCEEEEECTTCCCCHHH-HHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHH-HHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHH
Confidence 57888888877663211 111122345788888888864211 11122223 34677888888732 2 234445
Q ss_pred ccCCCCCeEecCCCCCccc-----cchhhcCCCCCcEeeccCccccc-----ccchhhhhccccceeecccccc
Q 001993 622 KKLIHLRYLALGENPWIKE-----LPEALCELCNLQTLDVSLCHYLK-----RLPERIGQLINLRHLMNSKEEW 685 (985)
Q Consensus 622 ~~l~~Lr~L~L~~~~~i~~-----lP~~i~~L~~L~~L~l~~~~~l~-----~lP~~i~~L~~L~~L~l~~n~~ 685 (985)
..+++|++|+|++|. +.. ++..+..+++|++|+|++|. +. .++..+...++|++|++++|..
T Consensus 180 ~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 180 AGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNG-AGDTAALALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp HTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSC-CCHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred hcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCC-CCHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence 667788888888887 653 45566777788888888887 44 2344455668888888886544
No 216
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.39 E-value=0.0011 Score=75.34 Aligned_cols=97 Identities=13% Similarity=0.067 Sum_probs=60.1
Q ss_pred EEEEecCCCCCCcccHHHHHhhhcCCCCCcEEEEEc----------C----chhhH-HhhcCcccccccCCCCChHHHHH
Q 001993 297 FFLVLDDVWTEEPQNWEQLLGCLRCGSKESRILVTT----------R----NEKVA-IAIGTTKFNIIPIELLSDEDCWS 361 (985)
Q Consensus 297 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt----------R----~~~v~-~~~~~~~~~~~~l~~L~~~e~~~ 361 (985)
-++++|++.....+.++.+...+...... -+|+.| . ...+. ....- ...+++.+++.++..+
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR--~~~~~~~~~~~~e~~~ 373 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDR--VMIIRTMLYTPQEMKQ 373 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTT--EEEEECCCCCHHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhh--cceeeCCCCCHHHHHH
Confidence 49999999877777788888887755444 344344 2 11111 11111 1467999999999999
Q ss_pred HHHHHhcCCCCCcccchhHHHHHHHHHHhc-CCChhHHHHH
Q 001993 362 IFSQLALSRRLDIEESENFENIGRQIVSKC-KGLPLAVKTL 401 (985)
Q Consensus 362 Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c-~GlPLai~~~ 401 (985)
++...+..... .. ..+....|++.+ +|.|.....+
T Consensus 374 iL~~~~~~~~~--~~---~~~~~~~i~~~a~~g~~r~a~~l 409 (456)
T 2c9o_A 374 IIKIRAQTEGI--NI---SEEALNHLGEIGTKTTLRYSVQL 409 (456)
T ss_dssp HHHHHHHHHTC--CB---CHHHHHHHHHHHHHSCHHHHHHT
T ss_pred HHHHHHHHhCC--CC---CHHHHHHHHHHccCCCHHHHHHH
Confidence 99876532211 11 124566778887 7887754443
No 217
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.37 E-value=0.001 Score=81.05 Aligned_cols=155 Identities=20% Similarity=0.245 Sum_probs=86.6
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhc------cCCceEEE
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRN------HFNEKIWV 252 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~------~f~~~~wv 252 (985)
.++||+.+++++++.|... ...-+.|+|.+|+|||++|+.+++. +.. .....+|.
T Consensus 187 ~~iGr~~~i~~l~~~l~~~-----------------~~~~vlL~G~~GtGKT~la~~la~~--l~~~~v~~~~~~~~~~~ 247 (758)
T 1r6b_X 187 PLIGREKELERAIQVLCRR-----------------RKNNPLLVGESGVGKTAIAEGLAWR--IVQGDVPEVMADCTIYS 247 (758)
T ss_dssp CCCSCHHHHHHHHHHHTSS-----------------SSCEEEEECCTTSSHHHHHHHHHHH--HHHTCSCGGGTTCEEEE
T ss_pred CccCCHHHHHHHHHHHhcc-----------------CCCCeEEEcCCCCCHHHHHHHHHHH--HHhCCCChhhcCCEEEE
Confidence 5899999999999999733 2345789999999999999999873 211 11222221
Q ss_pred -EeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh-cCceEEEEecCCCCC--------CcccHHHHHhhhcCC
Q 001993 253 -CVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESI-EGKKFFLVLDDVWTE--------EPQNWEQLLGCLRCG 322 (985)
Q Consensus 253 -~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~--------~~~~~~~l~~~l~~~ 322 (985)
..+.- +.+.. .....+.....+.+.+ ..++.+|++|++... .......+...+..
T Consensus 248 ~~~~~l-------------~~~~~-~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~- 312 (758)
T 1r6b_X 248 LDIGSL-------------LAGTK-YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS- 312 (758)
T ss_dssp CCCC----------------CCCC-CSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS-
T ss_pred EcHHHH-------------hcccc-ccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh-
Confidence 11110 11111 1122333333333333 346799999999643 11111222222212
Q ss_pred CCCcEEEEEcCchhhHHhhc-----CcccccccCCCCChHHHHHHHHHHh
Q 001993 323 SKESRILVTTRNEKVAIAIG-----TTKFNIIPIELLSDEDCWSIFSQLA 367 (985)
Q Consensus 323 ~~gs~iivTtR~~~v~~~~~-----~~~~~~~~l~~L~~~e~~~Lf~~~~ 367 (985)
..+..+|.+|.......... ...+..+.+.+.+.++..+++....
T Consensus 313 ~~~~~~I~at~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 313 SGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp SCCCEEEEEECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred CCCeEEEEEeCchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 23456777766544321111 0122468899999999888887643
No 218
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.37 E-value=0.0012 Score=73.02 Aligned_cols=187 Identities=18% Similarity=0.186 Sum_probs=93.8
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
++.|-++.+++|.+.+.-.-. .+...... +-..++-|.++|++|.|||+||+++++ .....| +.|+.++-.
T Consensus 173 digGl~~~k~~l~e~v~~pl~--~p~~~~~~--g~~~prGiLL~GPPGtGKT~lakAiA~--~~~~~~---~~v~~~~l~ 243 (428)
T 4b4t_K 173 DVGGLDMQKQEIREAVELPLV--QADLYEQI--GIDPPRGVLLYGPPGTGKTMLVKAVAN--STKAAF---IRVNGSEFV 243 (428)
T ss_dssp GSCSCHHHHHHHHHHHHHHHH--CHHHHHHH--CCCCCCEEEEESCTTTTHHHHHHHHHH--HHTCEE---EEEEGGGTC
T ss_pred HhccHHHHHHHHHHHHHHHHh--CHHHHHhC--CCCCCceEEEECCCCCCHHHHHHHHHH--HhCCCe---EEEecchhh
Confidence 688999988888776642100 00000000 023456799999999999999999998 343332 334433211
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCC----------CCcc----cHHHHHhhhc--CC
Q 001993 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWT----------EEPQ----NWEQLLGCLR--CG 322 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~----------~~~~----~~~~l~~~l~--~~ 322 (985)
.. ........+...+...-...++++++|+++. .... ....++..+. ..
T Consensus 244 --------------~~-~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~ 308 (428)
T 4b4t_K 244 --------------HK-YLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQ 308 (428)
T ss_dssp --------------CS-SCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCS
T ss_pred --------------cc-ccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCC
Confidence 11 1111112222223333346789999999841 0011 1233333333 23
Q ss_pred CCCcEEEEEcCchh-hHHhh-cCcc-cccccCCCCChH-HHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCCh
Q 001993 323 SKESRILVTTRNEK-VAIAI-GTTK-FNIIPIELLSDE-DCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLP 395 (985)
Q Consensus 323 ~~gs~iivTtR~~~-v~~~~-~~~~-~~~~~l~~L~~~-e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 395 (985)
..+..||.||...+ +...+ .... ...+.+..+... +-.++|+.+...... ....+ ...+++.+.|.-
T Consensus 309 ~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l--~~~~d----l~~lA~~t~G~s 379 (428)
T 4b4t_K 309 STNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSL--APEAD----LDSLIIRNDSLS 379 (428)
T ss_dssp SCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCB--CTTCC----HHHHHHHTTTCC
T ss_pred CCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCC--CcccC----HHHHHHHCCCCC
Confidence 44556777776554 22222 1111 135667656554 445566655433221 11112 356677777753
No 219
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.36 E-value=0.0001 Score=76.45 Aligned_cols=58 Identities=19% Similarity=0.169 Sum_probs=25.6
Q ss_pred ccCCcceeecCC--CCC---CCCcccccCCCCCeEecCCCCCccccchhhcCCC--CCcEeeccCcc
Q 001993 601 DRLTCLRSIDGL--PVG---QIPKGIKKLIHLRYLALGENPWIKELPEALCELC--NLQTLDVSLCH 660 (985)
Q Consensus 601 ~~l~~Lr~L~l~--~~~---~lp~~i~~l~~Lr~L~L~~~~~i~~lP~~i~~L~--~L~~L~l~~~~ 660 (985)
.+++.|+.|+|+ .+. .+|..+..+++|++|+|++|. +..+. .+..+. +|++|+|++|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~l~L~~L~L~~Np 231 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSER-ELDKIKGLKLEELWLDGNS 231 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSGG-GGGGGTTSCCSEEECTTST
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCch-hhhhcccCCcceEEccCCc
Confidence 344555555554 222 222334445555555555554 44431 133333 45555555554
No 220
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.35 E-value=0.00023 Score=77.92 Aligned_cols=59 Identities=15% Similarity=0.116 Sum_probs=29.9
Q ss_pred CCCCCeEEEeeccCCCCCCCChhh---hccccccEEeEeccCCCCc-----CC-CCCCCCccceeeccCCC
Q 001993 788 PSSLEKLGIYGYAGDTISPTSDWM---LSLAKLRVLTLRFCNECEC-----LP-PLGKLPCLETLVLEGMS 849 (985)
Q Consensus 788 ~~~L~~L~l~~~~~~~~~~~p~~~---~~l~~L~~L~L~~~~~~~~-----l~-~l~~l~~L~~L~L~~~~ 849 (985)
+++|+.|.+.+|...... +..+ ..+++|+.|+|+.|. ++. ++ .+..+++|+.|+|++|.
T Consensus 251 ~p~Lr~L~L~~~~i~~~~--~~~la~a~~~~~L~~LdLs~n~-L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVV--VEMFLESDILPQLETMDISAGV-LTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp CTTCCEEEEESCTTHHHH--HHHHHHCSSGGGCSEEECCSSC-CBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CCCcCEEeCCCCCCchHH--HHHHHhCccCCCCCEEECCCCC-CChHHHHHHHhhcccCCcceEEECCCCc
Confidence 456666666554432110 1111 146677777776653 322 22 23456777777776653
No 221
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.35 E-value=0.00063 Score=82.84 Aligned_cols=159 Identities=19% Similarity=0.249 Sum_probs=89.9
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
.++|.+..++.+...+.....+ ...+......+.++|++|+|||++|+.+++. ....-...+.++++.-.
T Consensus 492 ~viGq~~a~~~l~~~i~~~~~~--------~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~--l~~~~~~~i~i~~s~~~ 561 (758)
T 3pxi_A 492 RVIGQDEAVVAVAKAVRRARAG--------LKDPKRPIGSFIFLGPTGVGKTELARALAES--IFGDEESMIRIDMSEYM 561 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHTTT--------CSCTTSCSEEEEEESCTTSSHHHHHHHHHHH--HHSCTTCEEEEEGGGGC
T ss_pred cCcChHHHHHHHHHHHHHHHcc--------cCCCCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCcceEEEechhcc
Confidence 6899999999998888743310 0011233457999999999999999999973 32222234455544321
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCCCcccHHHHHhhhcCC-----------CCCcE
Q 001993 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTEEPQNWEQLLGCLRCG-----------SKESR 327 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~ 327 (985)
+ ..... ...+...++ ....-+|+||++..........+...+..+ ....+
T Consensus 562 ~--------------~~~~~--~~~l~~~~~---~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~ 622 (758)
T 3pxi_A 562 E--------------KHSTS--GGQLTEKVR---RKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTI 622 (758)
T ss_dssp S--------------SCCCC-----CHHHHH---HCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCE
T ss_pred c--------------ccccc--cchhhHHHH---hCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeE
Confidence 1 00000 111122222 133459999999776666677777666532 13458
Q ss_pred EEEEcCchh-----h----HHhhcC---cc-cccccCCCCChHHHHHHHHHH
Q 001993 328 ILVTTRNEK-----V----AIAIGT---TK-FNIIPIELLSDEDCWSIFSQL 366 (985)
Q Consensus 328 iivTtR~~~-----v----~~~~~~---~~-~~~~~l~~L~~~e~~~Lf~~~ 366 (985)
||+||.... + ...+.. .. ..++.+.+++.++..+++...
T Consensus 623 iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~ 674 (758)
T 3pxi_A 623 LIMTSNVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLM 674 (758)
T ss_dssp EEEEESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHH
T ss_pred EEEeCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHH
Confidence 888887311 1 111111 00 146788889888877777654
No 222
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.33 E-value=0.0015 Score=79.40 Aligned_cols=148 Identities=18% Similarity=0.207 Sum_probs=80.9
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhcc-----CCceEEEE
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNH-----FNEKIWVC 253 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-----f~~~~wv~ 253 (985)
.++||+.+++++...|.... ..-+.|+|++|+|||++|+.+++. +... ....-++.
T Consensus 181 ~iiG~~~~i~~l~~~l~~~~-----------------~~~vLL~G~pGtGKT~la~~la~~--l~~~~~p~~l~~~~~~~ 241 (758)
T 3pxi_A 181 PVIGRSKEIQRVIEVLSRRT-----------------KNNPVLIGEPGVGKTAIAEGLAQQ--IINNEVPEILRDKRVMT 241 (758)
T ss_dssp CCCCCHHHHHHHHHHHHCSS-----------------SCEEEEESCTTTTTHHHHHHHHHH--HHSSCSCTTTSSCCEEC
T ss_pred CccCchHHHHHHHHHHhCCC-----------------CCCeEEECCCCCCHHHHHHHHHHH--HhcCCCChhhcCCeEEE
Confidence 58999999999999997432 234789999999999999999873 2111 01111121
Q ss_pred eCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEEEEEcC
Q 001993 254 VSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRILVTTR 333 (985)
Q Consensus 254 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR 333 (985)
++- +.. ....-...+...+......++.+|++|.. .+..+.+...+. ....++|.||.
T Consensus 242 ~~~---------------g~~-~~G~~e~~l~~~~~~~~~~~~~iLfiD~~----~~~~~~L~~~l~--~~~v~~I~at~ 299 (758)
T 3pxi_A 242 LDM---------------GTK-YRGEFEDRLKKVMDEIRQAGNIILFIDAA----IDASNILKPSLA--RGELQCIGATT 299 (758)
T ss_dssp C--------------------------CTTHHHHHHHHHTCCCCEEEECC------------CCCTT--SSSCEEEEECC
T ss_pred ecc---------------ccc-ccchHHHHHHHHHHHHHhcCCEEEEEcCc----hhHHHHHHHHHh--cCCEEEEeCCC
Confidence 111 000 00000112222333333467889999921 122223333333 23456777766
Q ss_pred chhhHHhhcC-----cccccccCCCCChHHHHHHHHHHh
Q 001993 334 NEKVAIAIGT-----TKFNIIPIELLSDEDCWSIFSQLA 367 (985)
Q Consensus 334 ~~~v~~~~~~-----~~~~~~~l~~L~~~e~~~Lf~~~~ 367 (985)
.......... ..+..+.+.+.+.++..+++....
T Consensus 300 ~~~~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 300 LDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp TTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred hHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 5542111110 022578999999999999998654
No 223
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.29 E-value=0.0024 Score=71.94 Aligned_cols=186 Identities=16% Similarity=0.145 Sum_probs=97.2
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
+++|.+..++++.+.+..-..+.... ..+...++-|.|+|++|+|||+||+.+++ +.... .+.++.++-.
T Consensus 17 di~G~~~~~~~l~e~v~~l~~~~~~~-----~~g~~~p~gvLL~GppGtGKT~Laraia~--~~~~~---f~~is~~~~~ 86 (476)
T 2ce7_A 17 DVGGAEEAIEELKEVVEFLKDPSKFN-----RIGARMPKGILLVGPPGTGKTLLARAVAG--EANVP---FFHISGSDFV 86 (476)
T ss_dssp GCCSCHHHHHHHHHHHHHHHCTHHHH-----TTTCCCCSEEEEECCTTSSHHHHHHHHHH--HHTCC---EEEEEGGGTT
T ss_pred HhCCcHHHHHHHHHHHHHhhChHHHh-----hcCCCCCCeEEEECCCCCCHHHHHHHHHH--HcCCC---eeeCCHHHHH
Confidence 68999987777766543211000000 00011233488999999999999999998 33222 2234433211
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCCCc--------------ccHHHHHhhhc--CC
Q 001993 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTEEP--------------QNWEQLLGCLR--CG 322 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~--------------~~~~~l~~~l~--~~ 322 (985)
.. ............+.....+.+.+|+||++..... .....+...+. ..
T Consensus 87 ~~---------------~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~ 151 (476)
T 2ce7_A 87 EL---------------FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDS 151 (476)
T ss_dssp TC---------------CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCG
T ss_pred HH---------------HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCC
Confidence 10 0000112223334444456789999999953211 12233333332 12
Q ss_pred CCCcEEEEEcCchhhHH-hh-cCcc-cccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCCh
Q 001993 323 SKESRILVTTRNEKVAI-AI-GTTK-FNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLP 395 (985)
Q Consensus 323 ~~gs~iivTtR~~~v~~-~~-~~~~-~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 395 (985)
..+..||.||...+... .. .... ...+.+...+.++-.++++.+...... ..... ...|++.+.|..
T Consensus 152 ~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l--~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 152 KEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPL--AEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp GGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB--CTTCC----HHHHHHTCTTCC
T ss_pred CCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCC--cchhh----HHHHHHhcCCCc
Confidence 34567777777654322 11 1111 136778888888878888776643321 11111 344788888876
No 224
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.28 E-value=0.0034 Score=68.63 Aligned_cols=186 Identities=17% Similarity=0.128 Sum_probs=96.3
Q ss_pred ceecchhhHHHHHHHHhcCC-CCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGS-ESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEP 257 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~ 257 (985)
++.|.++.+++|.+.+.-.- .+. ..... +-..++-|.++|++|.|||.||+++++ .....| +.++.++
T Consensus 183 DIgGld~~k~~L~e~v~~Pl~~pe---~f~~~--Gi~~prGvLLyGPPGTGKTlLAkAiA~--e~~~~f---i~v~~s~- 251 (437)
T 4b4t_I 183 DIGGLESQIQEIKESVELPLTHPE---LYEEM--GIKPPKGVILYGAPGTGKTLLAKAVAN--QTSATF---LRIVGSE- 251 (437)
T ss_dssp GTCSCHHHHHHHHHHHHHHHHCCH---HHHHH--TCCCCSEEEEESSTTTTHHHHHHHHHH--HHTCEE---EEEESGG-
T ss_pred ecCcHHHHHHHHHHHHHHHHhCHH---HHHhC--CCCCCCCCceECCCCchHHHHHHHHHH--HhCCCE---EEEEHHH-
Confidence 57899988888877653210 000 00000 023457799999999999999999998 333332 2233222
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCCC----------cc----cHHHHHhhhc--C
Q 001993 258 FDDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTEE----------PQ----NWEQLLGCLR--C 321 (985)
Q Consensus 258 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------~~----~~~~l~~~l~--~ 321 (985)
+... ........+...+...-...+++|++|+++... .. ....++..+. .
T Consensus 252 -------------l~sk-~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~ 317 (437)
T 4b4t_I 252 -------------LIQK-YLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFD 317 (437)
T ss_dssp -------------GCCS-SSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCC
T ss_pred -------------hhhc-cCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcC
Confidence 1111 111111112222222334678999999985310 01 1222333332 2
Q ss_pred CCCCcEEEEEcCchhhH-Hhhc-Ccc-cccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCCh
Q 001993 322 GSKESRILVTTRNEKVA-IAIG-TTK-FNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLP 395 (985)
Q Consensus 322 ~~~gs~iivTtR~~~v~-~~~~-~~~-~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 395 (985)
...+..||.||-..+.. ..+- ... ...+.+..-+.++-.++|+.+...... ....+ ...|++.+.|+-
T Consensus 318 ~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l--~~dvd----l~~LA~~T~GfS 388 (437)
T 4b4t_I 318 DRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNL--SEDVN----LETLVTTKDDLS 388 (437)
T ss_dssp CSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCB--CSCCC----HHHHHHHCCSCC
T ss_pred CCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCC--CCcCC----HHHHHHhCCCCC
Confidence 23455677777655432 2221 111 145778777888888888876643321 11112 356677777653
No 225
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.27 E-value=0.0064 Score=67.66 Aligned_cols=105 Identities=15% Similarity=0.171 Sum_probs=60.6
Q ss_pred hhccccccEEeEeccCCCCcCC--CCCCCCccceeeccCCCCceEeCCcccCCchhhhhhhhhhhcccccccCCCCCccc
Q 001993 811 MLSLAKLRVLTLRFCNECECLP--PLGKLPCLETLVLEGMSSVKRLGNGFLGIAEDHQARADQAETASSIIRDTAFPRLE 888 (985)
Q Consensus 811 ~~~l~~L~~L~L~~~~~~~~l~--~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fp~L~ 888 (985)
+..+.+|+.+.+.+.. ..+. .+.++++|+.+.+. ..++.++...+ .++.+|+
T Consensus 261 F~~c~~L~~i~lp~~~--~~I~~~aF~~c~~L~~i~l~--~~i~~I~~~aF----------------------~~c~~L~ 314 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSV--VSIGTGAFMNCPALQDIEFS--SRITELPESVF----------------------AGCISLK 314 (394)
T ss_dssp TTTCSSCCEEECCTTC--CEECTTTTTTCTTCCEEECC--TTCCEECTTTT----------------------TTCTTCC
T ss_pred eeecccccEEeccccc--ceecCcccccccccccccCC--CcccccCceee----------------------cCCCCcC
Confidence 3456667777665432 2222 35567777777775 34666665433 2355777
Q ss_pred eeeccccccccccccccccCcccccccccceeecccccCCCCC-CCCCCCCCcCeEEecCch
Q 001993 889 TLEFLDMEKWEEWDDCEIAGGKTIMPRLRHLSICWSPELKALP-DYILGSTSLDKLLIYYSR 949 (985)
Q Consensus 889 ~L~l~~~~~L~~~~~~~~~~~~~~lp~L~~L~i~~c~~L~~lp-~~~~~l~~L~~L~i~~c~ 949 (985)
.+.|-+ +++.+.. .....+.+|+.+.|-+ .++.+. ..+.+|++|+.+++.+..
T Consensus 315 ~i~lp~--~v~~I~~----~aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 315 SIDIPE--GITQILD----DAFAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp EEECCT--TCCEECT----TTTTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESSCH
T ss_pred EEEeCC--cccEehH----hHhhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECCce
Confidence 777743 2332221 1234567788887743 366665 346678888888887754
No 226
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.27 E-value=0.0013 Score=72.87 Aligned_cols=185 Identities=14% Similarity=0.148 Sum_probs=95.4
Q ss_pred ceecchhhHHHHHHHHhcCC-CCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGS-ESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEP 257 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~ 257 (985)
++.|-++.+++|.+.+.-.- .+. ... ..+-..++-|.++|++|.|||.||+++++ .....| +.++.+.
T Consensus 182 digGl~~~k~~l~e~v~~pl~~pe---~f~--~~g~~~prGvLLyGPPGTGKTllAkAiA~--e~~~~f---~~v~~s~- 250 (434)
T 4b4t_M 182 DVGGLDKQIEELVEAIVLPMKRAD---KFK--DMGIRAPKGALMYGPPGTGKTLLARACAA--QTNATF---LKLAAPQ- 250 (434)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCSH---HHH--HHCCCCCCEEEEESCTTSSHHHHHHHHHH--HHTCEE---EEEEGGG-
T ss_pred hcCcHHHHHHHHHHHHHHHHhCHH---HHH--hCCCCCCCeeEEECcCCCCHHHHHHHHHH--HhCCCE---EEEehhh-
Confidence 68899998888877643210 000 000 00023467899999999999999999998 333332 2333322
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCC-----CC-c----cc----HHHHHhhhcC--
Q 001993 258 FDDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWT-----EE-P----QN----WEQLLGCLRC-- 321 (985)
Q Consensus 258 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~-----~~-~----~~----~~~l~~~l~~-- 321 (985)
+.... .......+...+...-...+++|++|+++. .+ . .. ...++..+..
T Consensus 251 -------------l~~~~-vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~ 316 (434)
T 4b4t_M 251 -------------LVQMY-IGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFS 316 (434)
T ss_dssp -------------GCSSC-SSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSC
T ss_pred -------------hhhcc-cchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccC
Confidence 11111 111111122222222235789999999842 00 0 01 1223333332
Q ss_pred CCCCcEEEEEcCchhh-HHhhc-Cc-ccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCC
Q 001993 322 GSKESRILVTTRNEKV-AIAIG-TT-KFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGL 394 (985)
Q Consensus 322 ~~~gs~iivTtR~~~v-~~~~~-~~-~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl 394 (985)
...+..||.||..++. ...+- .. -...+.+..-+.++-.++|+.+...... ...-+ ...|++.+.|+
T Consensus 317 ~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~--~~dvd----l~~lA~~t~G~ 386 (434)
T 4b4t_M 317 SDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTT--DDDIN----WQELARSTDEF 386 (434)
T ss_dssp SSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCB--CSCCC----HHHHHHHCSSC
T ss_pred CCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCC--CCcCC----HHHHHHhCCCC
Confidence 2334466667766543 22221 11 1146788888888888888766533221 11111 35677788775
No 227
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.01 E-value=0.0004 Score=68.25 Aligned_cols=107 Identities=16% Similarity=0.090 Sum_probs=50.6
Q ss_pred cCCCCceEEEccCc-CCcc-hhhhHHHhhccCCcceeecCCCC--C-----CCCcccccCCCCCeEecCCCCCccc----
Q 001993 574 YDETKLRSLVLDQR-LSFK-PRIALSKLFDRLTCLRSIDGLPV--G-----QIPKGIKKLIHLRYLALGENPWIKE---- 640 (985)
Q Consensus 574 ~~~~~Lr~L~l~~~-~~~~-~~~~~~~~~~~l~~Lr~L~l~~~--~-----~lp~~i~~l~~Lr~L~L~~~~~i~~---- 640 (985)
...+.|++|.++++ .... ....+...+...+.|++|+++.. . .+...+.....|++|+|++|. +..
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~~g~~ 111 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF-ISGSGIL 111 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC-CCHHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc-CCHHHHH
Confidence 34566666666665 3211 01123333445555666666521 1 122233344556666666665 443
Q ss_pred -cchhhcCCCCCcEeec--cCcccccc-----cchhhhhccccceeeccc
Q 001993 641 -LPEALCELCNLQTLDV--SLCHYLKR-----LPERIGQLINLRHLMNSK 682 (985)
Q Consensus 641 -lP~~i~~L~~L~~L~l--~~~~~l~~-----lP~~i~~L~~L~~L~l~~ 682 (985)
+...+...++|++|+| ++|. +.. +...+...++|++|++++
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~ 160 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKFGYHF 160 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred HHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEEeccC
Confidence 3444555555666666 4444 221 223333445566665553
No 228
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.00 E-value=0.00046 Score=73.78 Aligned_cols=37 Identities=16% Similarity=0.162 Sum_probs=27.5
Q ss_pred CEEEEEEccCCchHHHHHHHHhcchhhh-ccCCceEEEEe
Q 001993 216 PTIISITGMGGIGKTTLAKLIFNDNEVR-NHFNEKIWVCV 254 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~-~~f~~~~wv~~ 254 (985)
...+.|+|++|+|||+||..+++. .. ..-..++++++
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~--~~~~~g~~v~~~~~ 189 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHE--LSEKKGVSTTLLHF 189 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH--HHHHSCCCEEEEEH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH--HHHhcCCcEEEEEH
Confidence 467899999999999999999984 33 23234556654
No 229
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.94 E-value=0.0049 Score=68.66 Aligned_cols=125 Identities=10% Similarity=0.127 Sum_probs=68.8
Q ss_pred CCCCCCCCCeEEEeeccCCCCCCCChhhhccccccEEeEeccCCCCcCC--CCCCCCccceeeccCCCCceEeCCcccCC
Q 001993 784 CLQPPSSLEKLGIYGYAGDTISPTSDWMLSLAKLRVLTLRFCNECECLP--PLGKLPCLETLVLEGMSSVKRLGNGFLGI 861 (985)
Q Consensus 784 ~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~--~l~~l~~L~~L~L~~~~~l~~l~~~~~~~ 861 (985)
.+..+..|+.+.+..... .+. ...+.++.+|+.+.+.. .++.++ .+.++.+|+.+.|.. +++.++...+
T Consensus 260 aF~~c~~L~~i~lp~~~~-~I~--~~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF-- 330 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVV-SIG--TGAFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPE--GITQILDDAF-- 330 (394)
T ss_dssp TTTTCSSCCEEECCTTCC-EEC--TTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTT--
T ss_pred eeeecccccEEecccccc-eec--CcccccccccccccCCC--cccccCceeecCCCCcCEEEeCC--cccEehHhHh--
Confidence 345566777777654321 221 23445677888888853 344454 477788888888864 3777766543
Q ss_pred chhhhhhhhhhhcccccccCCCCCccceeeccccccccccccccccCcccccccccceeecccccCCCCCCCCCCCCCcC
Q 001993 862 AEDHQARADQAETASSIIRDTAFPRLETLEFLDMEKWEEWDDCEIAGGKTIMPRLRHLSICWSPELKALPDYILGSTSLD 941 (985)
Q Consensus 862 ~~~~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~lp~L~~L~i~~c~~L~~lp~~~~~l~~L~ 941 (985)
.++.+|+.+.|-. +++.+.. .....+++|+.+.+.+.... . ..+..+.+|+
T Consensus 331 --------------------~~C~~L~~i~ip~--sv~~I~~----~aF~~C~~L~~i~~~~~~~~--~-~~~~~~~~L~ 381 (394)
T 4gt6_A 331 --------------------AGCEQLERIAIPS--SVTKIPE----SAFSNCTALNNIEYSGSRSQ--W-NAISTDSGLQ 381 (394)
T ss_dssp --------------------TTCTTCCEEEECT--TCCBCCG----GGGTTCTTCCEEEESSCHHH--H-HTCBCCCCC-
T ss_pred --------------------hCCCCCCEEEECc--ccCEEhH----hHhhCCCCCCEEEECCceee--h-hhhhccCCCC
Confidence 2356788887742 2333322 12345788888888664211 1 2344566777
Q ss_pred eEEec
Q 001993 942 KLLIY 946 (985)
Q Consensus 942 ~L~i~ 946 (985)
.|.+.
T Consensus 382 ~i~i~ 386 (394)
T 4gt6_A 382 NLPVA 386 (394)
T ss_dssp -----
T ss_pred EEEeC
Confidence 77664
No 230
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.91 E-value=0.0022 Score=79.02 Aligned_cols=138 Identities=19% Similarity=0.282 Sum_probs=74.4
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
.++|.+..++.+...+.....+ ...+......+.|+|++|+|||++|+.+++. ....-...+.++++.-.
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g--------~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~--~~~~~~~~i~i~~~~~~ 628 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAG--------LKDPNRPIGSFLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMTEYM 628 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGG--------CSCSSSCSEEEEEBSCSSSSHHHHHHHHHHH--HHSSGGGEEEECTTTCC
T ss_pred ccCCcHHHHHHHHHHHHHHhcc--------cCCCCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhcc
Confidence 5799999999988887643200 0001233468999999999999999999873 21111123444444322
Q ss_pred CHHHHHHHHHHHhcCCCCC--CC-CHHHHHHHHHHHhcCceEEEEecCCCCCCcccHHHHHhhhcCCC-----------C
Q 001993 259 DDIRIAKAILESLKGSATN--AV-ESETVLKQLRESIEGKKFFLVLDDVWTEEPQNWEQLLGCLRCGS-----------K 324 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~--~~-~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~ 324 (985)
... . ...+.+.... .. ....+...++. ...-+|+||++.....+..+.+...+..+. .
T Consensus 629 ~~~-~----~s~l~g~~~~~~G~~~~g~l~~~~~~---~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~ 700 (854)
T 1qvr_A 629 EKH-A----VSRLIGAPPGYVGYEEGGQLTEAVRR---RPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFR 700 (854)
T ss_dssp SSG-G----GGGC--------------CHHHHHHH---CSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECT
T ss_pred chh-H----HHHHcCCCCCCcCccccchHHHHHHh---CCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccC
Confidence 110 0 0111111100 00 01122222222 234689999997766666777777776431 2
Q ss_pred CcEEEEEcCc
Q 001993 325 ESRILVTTRN 334 (985)
Q Consensus 325 gs~iivTtR~ 334 (985)
+..||+||..
T Consensus 701 ~~iiI~tsn~ 710 (854)
T 1qvr_A 701 NTVIILTSNL 710 (854)
T ss_dssp TEEEEEECCT
T ss_pred CeEEEEecCc
Confidence 4457777764
No 231
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.90 E-value=0.00071 Score=70.06 Aligned_cols=80 Identities=21% Similarity=0.221 Sum_probs=52.4
Q ss_pred ccCCCCCeEecCCCCCcccc---chhhcCCCCCcEeeccCcccccccchhhhhcc--ccceeecccccccccccCCC---
Q 001993 622 KKLIHLRYLALGENPWIKEL---PEALCELCNLQTLDVSLCHYLKRLPERIGQLI--NLRHLMNSKEEWSRLSYMPR--- 693 (985)
Q Consensus 622 ~~l~~Lr~L~L~~~~~i~~l---P~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~--~L~~L~l~~n~~~~l~~~p~--- 693 (985)
.++++|+.|+|++|. +..+ |..+..+++|++|+|++|. +..+ ..+..+. +|++|++++|.+. ..+|.
T Consensus 167 ~~l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~-~~l~~l~~l~L~~L~L~~Npl~--~~~~~~~~ 241 (267)
T 3rw6_A 167 ENIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGNE-LKSE-RELDKIKGLKLEELWLDGNSLC--DTFRDQST 241 (267)
T ss_dssp HHCTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEECTTSC-CCSG-GGGGGGTTSCCSEEECTTSTTG--GGCSSHHH
T ss_pred hhCCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEECCCCc-cCCc-hhhhhcccCCcceEEccCCcCc--cccCcchh
Confidence 457788888888887 6654 4566788888888888887 6655 3355555 8888888876543 22331
Q ss_pred ----cCCCCCCCCccCc
Q 001993 694 ----GMERLTGLRTLGA 706 (985)
Q Consensus 694 ----~i~~L~~L~~L~~ 706 (985)
.+..+++|+.|+.
T Consensus 242 y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 242 YISAIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHHHHCTTCCEESS
T ss_pred HHHHHHHHCcccCeECC
Confidence 1445556666654
No 232
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.89 E-value=0.0027 Score=67.35 Aligned_cols=25 Identities=36% Similarity=0.585 Sum_probs=22.4
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhc
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
..+..+.++|++|+|||+||+.+++
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456889999999999999999998
No 233
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.88 E-value=0.0055 Score=73.21 Aligned_cols=186 Identities=14% Similarity=0.175 Sum_probs=98.0
Q ss_pred ceecchhhHHHHHHHHhcC-CCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCC
Q 001993 179 EIRGRNHLQNKVASLLMSG-SESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEP 257 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~ 257 (985)
++.|.++.+++|.+++.-. ..+. ... ..+-..++-|.++|++|.|||+||+.+++. ...+| +.|+.++
T Consensus 205 dIgGl~~~~~~l~e~v~~pl~~p~---~f~--~~g~~~p~GILL~GPPGTGKT~LAraiA~e--lg~~~---~~v~~~~- 273 (806)
T 3cf2_A 205 DIGGCRKQLAQIKEMVELPLRHPA---LFK--AIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGPE- 273 (806)
T ss_dssp GCCSCCTTHHHHHHHHHHHHHCCG---GGT--SCCCCCCCEEEEECCTTSCHHHHHHHHHTT--TTCEE---EEEEHHH-
T ss_pred hhcCHHHHHHHHHHHHHHHccCHH---HHh--hcCCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCeE---EEEEhHH-
Confidence 5788988888887765320 0000 000 001234678999999999999999999983 33332 3343221
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCCC-------ccc----HHHHHhhhcC--CCC
Q 001993 258 FDDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTEE-------PQN----WEQLLGCLRC--GSK 324 (985)
Q Consensus 258 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-------~~~----~~~l~~~l~~--~~~ 324 (985)
+... ........+...+....+..+.+|+||+++..- .+. ...+...+.. ...
T Consensus 274 -------------l~sk-~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~ 339 (806)
T 3cf2_A 274 -------------IMSK-LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRA 339 (806)
T ss_dssp -------------HHSS-CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGG
T ss_pred -------------hhcc-cchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccC
Confidence 1111 111112223333444445679999999985311 011 1223333321 123
Q ss_pred CcEEEEEcCchh-hHHhhcC--cccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCCh
Q 001993 325 ESRILVTTRNEK-VAIAIGT--TKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLP 395 (985)
Q Consensus 325 gs~iivTtR~~~-v~~~~~~--~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 395 (985)
+..||.||...+ +...+.. .-...+.+...+.++-.++|+.+...... ....+ ...|++++.|.-
T Consensus 340 ~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~--~~dvd----l~~lA~~T~Gfs 407 (806)
T 3cf2_A 340 HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL--ADDVD----LEQVANETHGHV 407 (806)
T ss_dssp CEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEE--CTTCC----HHHHHHHCCSCC
T ss_pred CEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCC--CcccC----HHHHHHhcCCCC
Confidence 445666666543 2222211 00146788888888888888876533211 11111 456778887764
No 234
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.87 E-value=0.0005 Score=72.19 Aligned_cols=165 Identities=15% Similarity=0.131 Sum_probs=81.3
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
+++|.+..++.+.+.+..-..+.. ..... ....+-+.|+|++|+|||+||+.+++. ....|- .+..+.-.
T Consensus 12 ~i~G~~~~~~~l~~~~~~~~~~~~--~~~~~---~~~~~~vll~G~~GtGKT~la~~la~~--~~~~~~---~v~~~~~~ 81 (268)
T 2r62_A 12 DMAGNEEAKEEVVEIVDFLKYPER--YANLG---AKIPKGVLLVGPPGTGKTLLAKAVAGE--AHVPFF---SMGGSSFI 81 (268)
T ss_dssp TSSSCTTTHHHHHHHHHHHHCHHH--HHHHS---CCCCSCCCCBCSSCSSHHHHHHHHHHH--HTCCCC---CCCSCTTT
T ss_pred HhCCcHHHHHHHHHHHHHHHChHH--HHHCC---CCCCceEEEECCCCCcHHHHHHHHHHH--hCCCEE---EechHHHH
Confidence 689999888888776542100000 00000 011233789999999999999999983 332221 11111110
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCCCc---------------ccHHHHHhhhcCC-
Q 001993 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTEEP---------------QNWEQLLGCLRCG- 322 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~---------------~~~~~l~~~l~~~- 322 (985)
+ ...+.. ...... .+......++.+|+||++..... .....+...+...
T Consensus 82 ~----------~~~~~~--~~~~~~---~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~ 146 (268)
T 2r62_A 82 E----------MFVGLG--ASRVRD---LFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFG 146 (268)
T ss_dssp T----------SCSSSC--SSSSST---THHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSS
T ss_pred H----------hhcchH--HHHHHH---HHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcc
Confidence 0 011111 011111 12222234678999999953211 0122233222211
Q ss_pred --CCCcEEEEEcCchhhH-Hhh-cCcc-cccccCCCCChHHHHHHHHHHhc
Q 001993 323 --SKESRILVTTRNEKVA-IAI-GTTK-FNIIPIELLSDEDCWSIFSQLAL 368 (985)
Q Consensus 323 --~~gs~iivTtR~~~v~-~~~-~~~~-~~~~~l~~L~~~e~~~Lf~~~~~ 368 (985)
.....||.||...... ... .... ...+.+...+.++-.+++.....
T Consensus 147 ~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~ 197 (268)
T 2r62_A 147 SENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIK 197 (268)
T ss_dssp CSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTS
T ss_pred cCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHh
Confidence 1224677777665421 111 1110 14678888888888888877653
No 235
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.85 E-value=0.0033 Score=63.45 Aligned_cols=86 Identities=19% Similarity=0.179 Sum_probs=53.0
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcC-----------CC-CCCCCHH
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKG-----------SA-TNAVESE 282 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~-----------~~-~~~~~~~ 282 (985)
.-.++.|+|.+|+||||||..++. ..-..++|++....++...+.. +.+..+. .. ....+..
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-----~~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-----LSGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQR 92 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-----HHCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-----HcCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHH
Confidence 346999999999999999999986 1224578888776556554443 3332211 11 1111223
Q ss_pred HHHHHHHHHhcCceEEEEecCCCC
Q 001993 283 TVLKQLRESIEGKKFFLVLDDVWT 306 (985)
Q Consensus 283 ~~~~~l~~~l~~k~~LlVlDdv~~ 306 (985)
+....++..+..+.-+||+|.+..
T Consensus 93 ~~~~~~~~l~~~~~~lliiD~~~~ 116 (220)
T 2cvh_A 93 RVIGSLKKTVDSNFALVVVDSITA 116 (220)
T ss_dssp HHHHHHHHHCCTTEEEEEEECCCC
T ss_pred HHHHHHHHHhhcCCCEEEEcCcHH
Confidence 344444444444578999999854
No 236
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.78 E-value=0.0013 Score=71.29 Aligned_cols=152 Identities=14% Similarity=0.189 Sum_probs=85.8
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
.++|++..++.+...+..+. -+.|+|++|+|||+||+.+++ ..... ...+.++...
T Consensus 28 ~i~g~~~~~~~l~~~l~~~~-------------------~vll~G~pGtGKT~la~~la~--~~~~~---~~~i~~~~~~ 83 (331)
T 2r44_A 28 VVVGQKYMINRLLIGICTGG-------------------HILLEGVPGLAKTLSVNTLAK--TMDLD---FHRIQFTPDL 83 (331)
T ss_dssp TCCSCHHHHHHHHHHHHHTC-------------------CEEEESCCCHHHHHHHHHHHH--HTTCC---EEEEECCTTC
T ss_pred ceeCcHHHHHHHHHHHHcCC-------------------eEEEECCCCCcHHHHHHHHHH--HhCCC---eEEEecCCCC
Confidence 68899999999888886432 588999999999999999987 33222 2233443333
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc-C--ceEEEEecCCCCCCcccHHHHHhhhcCC-----------CC
Q 001993 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESIE-G--KKFFLVLDDVWTEEPQNWEQLLGCLRCG-----------SK 324 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-~--k~~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~ 324 (985)
...++..... ........ .+. + ...++++|++..........+...+... ..
T Consensus 84 ~~~~l~g~~~---~~~~~~~~-----------~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~ 149 (331)
T 2r44_A 84 LPSDLIGTMI---YNQHKGNF-----------EVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDN 149 (331)
T ss_dssp CHHHHHEEEE---EETTTTEE-----------EEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCS
T ss_pred ChhhcCCcee---ecCCCCce-----------EeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCC
Confidence 3332211100 00000000 000 1 1258999999776655555565554421 22
Q ss_pred CcEEEEEcCchh------hHHhh-cCcccccccCCCCChHHHHHHHHHHhcC
Q 001993 325 ESRILVTTRNEK------VAIAI-GTTKFNIIPIELLSDEDCWSIFSQLALS 369 (985)
Q Consensus 325 gs~iivTtR~~~------v~~~~-~~~~~~~~~l~~L~~~e~~~Lf~~~~~~ 369 (985)
...||.|+.... +...+ .-. ...+.+.+.+.++-.+++.+....
T Consensus 150 ~~~viat~np~~~~~~~~l~~~l~~Rf-~~~i~i~~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 150 PFLVLATQNPVEQEGTYPLPEAQVDRF-MMKIHLTYLDKESELEVMRRVSNM 200 (331)
T ss_dssp SCEEEEEECTTCCSCCCCCCHHHHTTS-SEEEECCCCCHHHHHHHHHHHHCT
T ss_pred CEEEEEecCCCcccCcccCCHHHHhhe-eEEEEcCCCCHHHHHHHHHhcccc
Confidence 345555555222 11111 111 024788889999999988887643
No 237
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.76 E-value=0.00082 Score=70.62 Aligned_cols=70 Identities=17% Similarity=0.323 Sum_probs=47.5
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEe--CCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCV--SEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESI 292 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~--s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 292 (985)
..+++.|+|++|+||||||.+++.. .-..++|+++ .+..+. . ..+.++....+.+.+
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~~~eE~v~~---------------~-~~~le~~l~~i~~~l 180 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATVRFGEPLSG---------------Y-NTDFNVFVDDIARAM 180 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEEEBSCSSTT---------------C-BCCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEecchhhhhh---------------h-hcCHHHHHHHHHHHH
Confidence 3467889999999999999999873 1124567777 332110 0 144566666666767
Q ss_pred cCceEEEEecCCCC
Q 001993 293 EGKKFFLVLDDVWT 306 (985)
Q Consensus 293 ~~k~~LlVlDdv~~ 306 (985)
...+ +||+|++..
T Consensus 181 ~~~~-LLVIDsI~a 193 (331)
T 2vhj_A 181 LQHR-VIVIDSLKN 193 (331)
T ss_dssp HHCS-EEEEECCTT
T ss_pred hhCC-EEEEecccc
Confidence 6656 999999943
No 238
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.72 E-value=0.00034 Score=68.73 Aligned_cols=114 Identities=16% Similarity=0.140 Sum_probs=72.3
Q ss_pred hhhHHHhhccCCcceeecCCCCCCC--------CcccccCCCCCeEecCCCCCccc-----cchhhcCCCCCcEeeccCc
Q 001993 593 RIALSKLFDRLTCLRSIDGLPVGQI--------PKGIKKLIHLRYLALGENPWIKE-----LPEALCELCNLQTLDVSLC 659 (985)
Q Consensus 593 ~~~~~~~~~~l~~Lr~L~l~~~~~l--------p~~i~~l~~Lr~L~L~~~~~i~~-----lP~~i~~L~~L~~L~l~~~ 659 (985)
...+...+...+.|+.|+++....+ ...+....+|++|+|++|. +.. +...+...++|++|+|++|
T Consensus 25 ~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N 103 (185)
T 1io0_A 25 EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESN 103 (185)
T ss_dssp HHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred HHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCC
Confidence 3345666788888999988855222 2345667788899998887 653 4555666788889999888
Q ss_pred ccccc-----cchhhhhccccceeec--cccccccc--ccCCCcCCCCCCCCccCceE
Q 001993 660 HYLKR-----LPERIGQLINLRHLMN--SKEEWSRL--SYMPRGMERLTGLRTLGAFV 708 (985)
Q Consensus 660 ~~l~~-----lP~~i~~L~~L~~L~l--~~n~~~~l--~~~p~~i~~L~~L~~L~~~~ 708 (985)
. +.. +...+...++|++|++ ++|....- ..+...+...++|++|++..
T Consensus 104 ~-i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~ 160 (185)
T 1io0_A 104 F-ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHF 160 (185)
T ss_dssp C-CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred c-CCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccC
Confidence 7 443 4455666778888888 54433210 11222334445666666543
No 239
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.69 E-value=0.0034 Score=76.51 Aligned_cols=137 Identities=16% Similarity=0.228 Sum_probs=73.9
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
.++|.+..++.+...+.....+ ...+......+.++|++|+|||++|+.+++. .. ...+.++++.-.
T Consensus 459 ~v~g~~~~~~~l~~~i~~~~~g--------~~~~~~p~~~~ll~G~~GtGKT~la~~la~~--l~---~~~~~i~~s~~~ 525 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKMARAG--------LGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA--LG---IELLRFDMSEYM 525 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHHTT--------CSCTTSCSEEEEEECSTTSSHHHHHHHHHHH--HT---CEEEEEEGGGCS
T ss_pred hccCHHHHHHHHHHHHHHHhcc--------cCCCCCCceEEEEECCCCCcHHHHHHHHHHH--hc---CCEEEEechhhc
Confidence 5889999888888777532100 0011234457999999999999999999873 32 223344444321
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh-cCceEEEEecCCCCCCcccHHHHHhhhcCCC-----------CCc
Q 001993 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESI-EGKKFFLVLDDVWTEEPQNWEQLLGCLRCGS-----------KES 326 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs 326 (985)
.... ...+.+........++ ...+.+.+ +....+|+||++.....+.++.+...+..+. ...
T Consensus 526 ~~~~-----~~~l~g~~~g~~g~~~-~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~ 599 (758)
T 1r6b_X 526 ERHT-----VSRLIGAPPGYVGFDQ-GGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNV 599 (758)
T ss_dssp SSSC-----CSSSCCCCSCSHHHHH-TTHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTE
T ss_pred chhh-----HhhhcCCCCCCcCccc-cchHHHHHHhCCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCe
Confidence 1100 0011111111110010 11122222 2346799999997766666667776665321 234
Q ss_pred EEEEEcCc
Q 001993 327 RILVTTRN 334 (985)
Q Consensus 327 ~iivTtR~ 334 (985)
.||.||..
T Consensus 600 ~iI~tsN~ 607 (758)
T 1r6b_X 600 VLVMTTNA 607 (758)
T ss_dssp EEEEEECS
T ss_pred EEEEecCc
Confidence 57777754
No 240
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.55 E-value=0.0064 Score=67.19 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=20.7
Q ss_pred CEEEEEEccCCchHHHHHHHHhc
Q 001993 216 PTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
...+.|+|++|+|||++|+.+++
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHH
Confidence 34688999999999999999997
No 241
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.47 E-value=0.0025 Score=73.90 Aligned_cols=165 Identities=16% Similarity=0.236 Sum_probs=78.7
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
+++|-++-.+.+.+.+.-.. . . . .....++.|+|++|+||||||+.++. .....| .-+.++...
T Consensus 82 di~G~~~vk~~i~~~~~l~~------~-~-~---~~~g~~vll~Gp~GtGKTtlar~ia~--~l~~~~---~~i~~~~~~ 145 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQK------L-T-K---SLKGPILCLAGPPGVGKTSLAKSIAK--SLGRKF---VRISLGGVR 145 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHH------H-S-S---SCCSCEEEEESSSSSSHHHHHHHHHH--HHTCEE---EEECCCC--
T ss_pred HhccHHHHHHHHHHHHHHHH------h-c-c---cCCCCEEEEECCCCCCHHHHHHHHHH--hcCCCe---EEEEecccc
Confidence 58888887777755443111 0 0 0 12456899999999999999999987 332222 223333322
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCCCcc----cHHHHHhhhcCCC-----------
Q 001993 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTEEPQ----NWEQLLGCLRCGS----------- 323 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~----~~~~l~~~l~~~~----------- 323 (985)
+...+.......++ .........+... ....-+++||++...... ....++..+....
T Consensus 146 ~~~~~~g~~~~~ig------~~~~~~~~~~~~a-~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~ 218 (543)
T 3m6a_A 146 DESEIRGHRRTYVG------AMPGRIIQGMKKA-GKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEE 218 (543)
T ss_dssp ------------------------CHHHHHHTT-CSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCC
T ss_pred hhhhhhhHHHHHhc------cCchHHHHHHHHh-hccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCe
Confidence 21111111000010 0011111122221 223348889999654322 1233444442211
Q ss_pred ----CCcEEEEEcCchhh-HHhhcCcccccccCCCCChHHHHHHHHHHh
Q 001993 324 ----KESRILVTTRNEKV-AIAIGTTKFNIIPIELLSDEDCWSIFSQLA 367 (985)
Q Consensus 324 ----~gs~iivTtR~~~v-~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 367 (985)
....||.||..... ...+.. ....+.+.+++.++-.+++..+.
T Consensus 219 ~~~~~~v~iI~ttN~~~~l~~aL~~-R~~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 219 TFDLSKVLFIATANNLATIPGPLRD-RMEIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp CCBCSSCEEEEECSSTTTSCHHHHH-HEEEEECCCCCHHHHHHHHHHTH
T ss_pred eecccceEEEeccCccccCCHHHHh-hcceeeeCCCCHHHHHHHHHHHH
Confidence 23467777665431 111111 12468899999998888877654
No 242
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.38 E-value=0.0029 Score=63.47 Aligned_cols=114 Identities=12% Similarity=-0.044 Sum_probs=64.1
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCC--CCCCHHHHHHHHHHHh
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSAT--NAVESETVLKQLRESI 292 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~l~~~l 292 (985)
.-.++.|+|..|+||||++..+++. ...+-..++.+..... .. ....+++.++.... ......++...+.+.+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r--~~~~g~kVli~~~~~d--~r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~ 85 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHR--LEYADVKYLVFKPKID--TR-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNS 85 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHH--HHHTTCCEEEEEECCC--GG-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTT
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEEeccC--ch-HHHHHHHhcCCCccccccCCHHHHHHHHHHHh
Confidence 4579999999999999999888873 3333333444433221 11 22234444432211 1123344555555444
Q ss_pred cCc-eEEEEecCCCCCCcccHHHHHhhhcCCCCCcEEEEEcCchh
Q 001993 293 EGK-KFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRILVTTRNEK 336 (985)
Q Consensus 293 ~~k-~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~ 336 (985)
.+. .-+||+|.+.....+..+.+.. +.. .|..||+|-+..+
T Consensus 86 ~~~~~dvViIDEaQ~l~~~~ve~l~~-L~~--~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 86 FNDETKVIGIDEVQFFDDRICEVANI-LAE--NGFVVIISGLDKN 127 (223)
T ss_dssp SCTTCCEEEECSGGGSCTHHHHHHHH-HHH--TTCEEEEECCSBC
T ss_pred hCCCCCEEEEecCccCcHHHHHHHHH-HHh--CCCeEEEEecccc
Confidence 434 4499999996544344444433 222 2678999998654
No 243
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.30 E-value=0.032 Score=61.55 Aligned_cols=42 Identities=17% Similarity=0.254 Sum_probs=18.8
Q ss_pred hccccccEEeEeccCCCCcCC--CCCCCCccceeeccCCCCceEeCC
Q 001993 812 LSLAKLRVLTLRFCNECECLP--PLGKLPCLETLVLEGMSSVKRLGN 856 (985)
Q Consensus 812 ~~l~~L~~L~L~~~~~~~~l~--~l~~l~~L~~L~L~~~~~l~~l~~ 856 (985)
..+.+|+.+.+..+ ++.++ .+.++.+|+.+.+.+ ..++.++.
T Consensus 260 ~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L~~i~l~~-~~i~~I~~ 303 (379)
T 4h09_A 260 QNCTALKTLNFYAK--VKTVPYLLCSGCSNLTKVVMDN-SAIETLEP 303 (379)
T ss_dssp TTCTTCCEEEECCC--CSEECTTTTTTCTTCCEEEECC-TTCCEECT
T ss_pred ceeehhcccccccc--ceeccccccccccccccccccc-cccceehh
Confidence 34455555555332 22222 244555555555543 22444443
No 244
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.29 E-value=0.057 Score=58.55 Aligned_cols=158 Identities=11% Similarity=0.006 Sum_probs=100.9
Q ss_pred CEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHH-HhcC
Q 001993 216 PTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRE-SIEG 294 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~ 294 (985)
.++..++|..|.||++.|..+.... ....|+....+.+... .+..++.+.+.. -+-+
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~---------------------~~~~~l~~~~~~~plf~ 75 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVA-AAQGFEEHHTFSIDPN---------------------TDWNAIFSLCQAMSLFA 75 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHH-HHHTCCEEEEEECCTT---------------------CCHHHHHHHHHHHHHCC
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHH-HhCCCCeeEEEEecCC---------------------CCHHHHHHHhcCcCCcc
Confidence 4689999999999999999988732 1233432211222221 233333333322 2346
Q ss_pred ceEEEEecCCCC-CCcccHHHHHhhhcCCCCCcEEEEEcCc-------hhhHHhhcCcccccccCCCCChHHHHHHHHHH
Q 001993 295 KKFFLVLDDVWT-EEPQNWEQLLGCLRCGSKESRILVTTRN-------EKVAIAIGTTKFNIIPIELLSDEDCWSIFSQL 366 (985)
Q Consensus 295 k~~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~iivTtR~-------~~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~ 366 (985)
.+-++|+|+++. .....++.+...+.....++.+|++|-. ..+...+... ...++..+++.++....+.+.
T Consensus 76 ~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr-~~~~~~~~l~~~~l~~~l~~~ 154 (343)
T 1jr3_D 76 SRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANR-SVQVTCQTPEQAQLPRWVAAR 154 (343)
T ss_dssp SCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTT-CEEEEECCCCTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhC-ceEEEeeCCCHHHHHHHHHHH
Confidence 677889999976 5556788888888766677777776643 2233332221 257889999999998888877
Q ss_pred hcCCCCCcccchhHHHHHHHHHHhcCCChhHHHHH
Q 001993 367 ALSRRLDIEESENFENIGRQIVSKCKGLPLAVKTL 401 (985)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 401 (985)
+...+.. .. .+.+..+++.++|...++...
T Consensus 155 ~~~~g~~--i~---~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 155 AKQLNLE--LD---DAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp HHHTTCE--EC---HHHHHHHHHSSTTCHHHHHHH
T ss_pred HHHcCCC--CC---HHHHHHHHHHhchHHHHHHHH
Confidence 6443321 11 355788999999998877654
No 245
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.22 E-value=0.0097 Score=72.29 Aligned_cols=166 Identities=14% Similarity=0.152 Sum_probs=86.1
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
+++|.+..+++|.+++...-.. + .....- .-.....|.|+|++|+||||||+.++. .....| +.++.++
T Consensus 205 di~G~~~~~~~l~e~i~~~l~~-~-~~~~~l--~i~~~~~vLL~Gp~GtGKTtLarala~--~l~~~~---i~v~~~~-- 273 (806)
T 1ypw_A 205 DVGGCRKQLAQIKEMVELPLRH-P-ALFKAI--GVKPPRGILLYGPPGTGKTLIARAVAN--ETGAFF---FLINGPE-- 273 (806)
T ss_dssp GCCSCSGGGGHHHHHHHHHHHC-G-GGGTSS--CCCCCCEEEECSCTTSSHHHHHHHHHH--TTTCEE---EEEEHHH--
T ss_pred HhCChHHHHHHHHHHHHHHhhC-H-HHHHhc--CCCCCCeEEEECcCCCCHHHHHHHHHH--HcCCcE---EEEEchH--
Confidence 6899999999988887531000 0 000000 013345799999999999999999987 333222 3333211
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCCC-------c----ccHHHHHhhhcCC--CCC
Q 001993 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTEE-------P----QNWEQLLGCLRCG--SKE 325 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-------~----~~~~~l~~~l~~~--~~g 325 (985)
+.... .......+...+.......+.++++|++.... . .....+...+... ..+
T Consensus 274 ------------l~~~~-~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~ 340 (806)
T 1ypw_A 274 ------------IMSKL-AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH 340 (806)
T ss_dssp ------------HSSSS-TTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSC
T ss_pred ------------hhhhh-hhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhccccc
Confidence 11110 01111222333333334567899999984211 0 0112233333311 234
Q ss_pred cEEEEEcCchh-hHHhhcC-cc-cccccCCCCChHHHHHHHHHHhc
Q 001993 326 SRILVTTRNEK-VAIAIGT-TK-FNIIPIELLSDEDCWSIFSQLAL 368 (985)
Q Consensus 326 s~iivTtR~~~-v~~~~~~-~~-~~~~~l~~L~~~e~~~Lf~~~~~ 368 (985)
..||.||.... +...+.. .. ...+.+...+.++-.+++...+.
T Consensus 341 v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~ 386 (806)
T 1ypw_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTK 386 (806)
T ss_dssp CEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTT
T ss_pred EEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHh
Confidence 45666666543 2222211 00 13567788888888888876653
No 246
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.16 E-value=0.021 Score=59.03 Aligned_cols=151 Identities=17% Similarity=0.153 Sum_probs=73.7
Q ss_pred EEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEE
Q 001993 219 ISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFF 298 (985)
Q Consensus 219 v~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~L 298 (985)
+.|+|++|+||||||+.++.. .. ...+.+... . +..... ......+...++..-...+.+
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~--~~---~~~i~~~~~------~----~~~~~~-----~~~~~~i~~~~~~~~~~~~~i 111 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE--AR---VPFITASGS------D----FVEMFV-----GVGAARVRDLFETAKRHAPCI 111 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH--TT---CCEEEEEHH------H----HHHSCT-----THHHHHHHHHHHHHTTSSSEE
T ss_pred EEEECCCCCCHHHHHHHHHHH--hC---CCEEEeeHH------H----HHHHHh-----hHHHHHHHHHHHHHHhcCCeE
Confidence 899999999999999999973 22 122333221 1 111100 000111112222222245689
Q ss_pred EEecCCCCC----------Cccc----HHHHHhhhcCCC--CCcEEEEEcCchhhHH-hhcC--cccccccCCCCChHHH
Q 001993 299 LVLDDVWTE----------EPQN----WEQLLGCLRCGS--KESRILVTTRNEKVAI-AIGT--TKFNIIPIELLSDEDC 359 (985)
Q Consensus 299 lVlDdv~~~----------~~~~----~~~l~~~l~~~~--~gs~iivTtR~~~v~~-~~~~--~~~~~~~l~~L~~~e~ 359 (985)
+++||+... .... ...+...+..+. ...-++.||..+.... .... .-...+.+...+.++-
T Consensus 112 ~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r 191 (254)
T 1ixz_A 112 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGR 191 (254)
T ss_dssp EEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHH
T ss_pred EEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHH
Confidence 999998310 0111 123333333222 2234555566554322 1111 1114678888888888
Q ss_pred HHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCCh
Q 001993 360 WSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLP 395 (985)
Q Consensus 360 ~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 395 (985)
.++++........ ..... ...+++.+.|.-
T Consensus 192 ~~il~~~~~~~~~--~~~~~----~~~la~~~~G~~ 221 (254)
T 1ixz_A 192 EQILRIHARGKPL--AEDVD----LALLAKRTPGFV 221 (254)
T ss_dssp HHHHHHHHTTSCB--CTTCC----HHHHHHTCTTCC
T ss_pred HHHHHHHHcCCCC--CcccC----HHHHHHHcCCCC
Confidence 8888766532211 11111 335677777653
No 247
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.12 E-value=0.038 Score=57.70 Aligned_cols=128 Identities=22% Similarity=0.172 Sum_probs=67.0
Q ss_pred EEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH-hcCceE
Q 001993 219 ISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRES-IEGKKF 297 (985)
Q Consensus 219 v~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~k~~ 297 (985)
+.|+|++|.||||||+.++.. ... ..+++...+-.+ . . ..........+.+. -...+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~--~~~---~~i~i~g~~l~~--------------~-~-~~~~~~~i~~vf~~a~~~~p~ 105 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE--SGL---NFISVKGPELLN--------------M-Y-VGESERAVRQVFQRAKNSAPC 105 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH--TTC---EEEEEETTTTCS--------------S-T-THHHHHHHHHHHHHHHHTCSE
T ss_pred EEEECCCCCcHHHHHHHHHHH--cCC---CEEEEEcHHHHh--------------h-h-hhHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999973 221 234443222110 0 0 00011111122222 234678
Q ss_pred EEEecCCCCCC-----------cccHHHHHhhhcCC--CCCcEEEEEcCchhhHH-hhcC--cccccccCCCCChHHHHH
Q 001993 298 FLVLDDVWTEE-----------PQNWEQLLGCLRCG--SKESRILVTTRNEKVAI-AIGT--TKFNIIPIELLSDEDCWS 361 (985)
Q Consensus 298 LlVlDdv~~~~-----------~~~~~~l~~~l~~~--~~gs~iivTtR~~~v~~-~~~~--~~~~~~~l~~L~~~e~~~ 361 (985)
++++|++.... ......+...+..+ ....-++.+|..+++.. .+.. .-...+.+...+.++-.+
T Consensus 106 i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~ 185 (274)
T 2x8a_A 106 VIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLA 185 (274)
T ss_dssp EEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHH
T ss_pred eEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHH
Confidence 99999995311 01123333334322 23445556666655332 2111 001456788888888888
Q ss_pred HHHHHh
Q 001993 362 IFSQLA 367 (985)
Q Consensus 362 Lf~~~~ 367 (985)
+|+...
T Consensus 186 il~~~~ 191 (274)
T 2x8a_A 186 ILKTIT 191 (274)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 888765
No 248
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.07 E-value=0.028 Score=58.95 Aligned_cols=186 Identities=16% Similarity=0.150 Sum_probs=87.6
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
+++|.+..++++.+....-........ . . -.-.+-+.|+|++|+||||||+.++.. .. ...+.+...
T Consensus 41 ~i~g~~~~~~~l~~l~~~~~~~~~l~~-~-~---~~~~~gvll~Gp~GtGKTtl~~~i~~~--~~---~~~i~~~~~--- 107 (278)
T 1iy2_A 41 DVAGAEEAKEELKEIVEFLKNPSRFHE-M-G---ARIPKGVLLVGPPGVGKTHLARAVAGE--AR---VPFITASGS--- 107 (278)
T ss_dssp GSSSCHHHHHHHHHHHHHHHCHHHHHH-T-T---CCCCCEEEEECCTTSSHHHHHHHHHHH--TT---CCEEEEEHH---
T ss_pred HhCChHHHHHHHHHHHHHHHCHHHHHH-c-C---CCCCCeEEEECCCcChHHHHHHHHHHH--cC---CCEEEecHH---
Confidence 688988777666554432110000000 0 0 001122899999999999999999973 32 123333321
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCC----------CcccH----HHHHhhhcCCC-
Q 001993 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTE----------EPQNW----EQLLGCLRCGS- 323 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~----------~~~~~----~~l~~~l~~~~- 323 (985)
. +..... ......+...++..-...+.++|+||+... ....+ ..+...+..+.
T Consensus 108 ---~----~~~~~~-----~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~ 175 (278)
T 1iy2_A 108 ---D----FVEMFV-----GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK 175 (278)
T ss_dssp ---H----HHHSTT-----THHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCT
T ss_pred ---H----HHHHHh-----hHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCC
Confidence 1 111100 000111112222222345689999998310 01111 22323333221
Q ss_pred -CCcEEEEEcCchhhHH-hhcC--cccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCCh
Q 001993 324 -KESRILVTTRNEKVAI-AIGT--TKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLP 395 (985)
Q Consensus 324 -~gs~iivTtR~~~v~~-~~~~--~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 395 (985)
....++.||..++... .... .-...+.+...+.++-.+++..++..... ..... ...+++.+.|..
T Consensus 176 ~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~--~~~~~----~~~la~~~~G~~ 245 (278)
T 1iy2_A 176 DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPL--AEDVD----LALLAKRTPGFV 245 (278)
T ss_dssp TCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCB--CTTCC----HHHHHHTCTTCC
T ss_pred CCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCC--CcccC----HHHHHHHcCCCC
Confidence 2234455565554322 2111 11146788888888888888776532211 11111 335677777754
No 249
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.06 E-value=0.016 Score=58.85 Aligned_cols=115 Identities=18% Similarity=0.152 Sum_probs=62.5
Q ss_pred CEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCC-------------------
Q 001993 216 PTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSAT------------------- 276 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~------------------- 276 (985)
-.+++|+|.+|+|||||++.++... ...=..++|+.... ....+...+. .++....
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~--~~~~~~v~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKG--LRDGDPCIYVTTEE--SRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEKED 97 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHH--HHHTCCEEEEESSS--CHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC----C
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH--HHCCCeEEEEEccc--CHHHHHHHHH-HhcchHHHHhhCCEEEEeccccccCc
Confidence 3689999999999999999998632 21112466665433 3444433332 3321100
Q ss_pred ----CCCCHHHHHHHHHHHhc-CceE--EEEecCCCCC---CcccHHHHHhhhcC--CCCCcEEEEEcCch
Q 001993 277 ----NAVESETVLKQLRESIE-GKKF--FLVLDDVWTE---EPQNWEQLLGCLRC--GSKESRILVTTRNE 335 (985)
Q Consensus 277 ----~~~~~~~~~~~l~~~l~-~k~~--LlVlDdv~~~---~~~~~~~l~~~l~~--~~~gs~iivTtR~~ 335 (985)
...+.+++...+.+.+. .++- +||+|..... +......+...+.. ...|.-||++|...
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 98 QWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp TTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred eeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 11244555555555443 2333 9999998521 23333444443331 12467788888764
No 250
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.03 E-value=0.016 Score=62.59 Aligned_cols=85 Identities=22% Similarity=0.270 Sum_probs=56.4
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCC-----CCCCCHHHHHHHH
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSA-----TNAVESETVLKQL 288 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l 288 (985)
+.-.++.|+|++|+||||||..++.. ....=..++|++....++.. .+++++... ....+.++....+
T Consensus 59 ~~G~i~~I~GppGsGKSTLal~la~~--~~~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~ 131 (356)
T 3hr8_A 59 PRGRIVEIFGQESSGKTTLALHAIAE--AQKMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIV 131 (356)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHH
Confidence 34579999999999999999999874 22222347888877766654 445554331 1234556666666
Q ss_pred HHHhc-CceEEEEecCCC
Q 001993 289 RESIE-GKKFFLVLDDVW 305 (985)
Q Consensus 289 ~~~l~-~k~~LlVlDdv~ 305 (985)
...++ .+.-++|+|.+-
T Consensus 132 ~~l~~~~~~dlvVIDSi~ 149 (356)
T 3hr8_A 132 DELVRSGVVDLIVVDSVA 149 (356)
T ss_dssp HHHHHTSCCSEEEEECTT
T ss_pred HHHhhhcCCCeEEehHhh
Confidence 55554 556789999984
No 251
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.00 E-value=0.032 Score=63.23 Aligned_cols=182 Identities=15% Similarity=0.143 Sum_probs=91.2
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
+++|.+..++++.+....-..+... ...+-.-.+-|.|+|++|+||||||+.++.. ... ..+.++.++-.
T Consensus 32 dv~G~~~~k~~l~~lv~~l~~~~~~-----~~lg~~ip~GvLL~GppGtGKTtLaraIa~~--~~~---~~i~i~g~~~~ 101 (499)
T 2dhr_A 32 DVAGAEEAKEELKEIVEFLKNPSRF-----HEMGARIPKGVLLVGPPGVGKTHLARAVAGE--ARV---PFITASGSDFV 101 (499)
T ss_dssp SSCSCHHHHHHHHHHHHHHHCGGGT-----TTTSCCCCSEEEEECSSSSSHHHHHHHHHHH--TTC---CEEEEEGGGGT
T ss_pred HcCCcHHHHHHHHHHHHHhhchhhh-----hhccCCCCceEEEECCCCCCHHHHHHHHHHH--hCC---CEEEEehhHHH
Confidence 6889988777666554321100000 0000011233899999999999999999973 321 23344432211
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc----CceEEEEecCCCCCC----------cccH----HHHHhhhc
Q 001993 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESIE----GKKFFLVLDDVWTEE----------PQNW----EQLLGCLR 320 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~k~~LlVlDdv~~~~----------~~~~----~~l~~~l~ 320 (985)
+ . ........++..++ ..+.++++|++.... ...+ ..+...+.
T Consensus 102 ~--------------~-----~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ld 162 (499)
T 2dhr_A 102 E--------------M-----FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMD 162 (499)
T ss_dssp S--------------S-----CTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGG
T ss_pred H--------------h-----hhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhc
Confidence 0 0 01111222333333 235899999994311 1112 23333333
Q ss_pred CC--CCCcEEEEEcCchhhHH-hhc-Cc-ccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCCh
Q 001993 321 CG--SKESRILVTTRNEKVAI-AIG-TT-KFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLP 395 (985)
Q Consensus 321 ~~--~~gs~iivTtR~~~v~~-~~~-~~-~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 395 (985)
.+ ..+..|+.||..++... .+- .. -...+.+...+.++-.++++.++..... ..... ...|++.+.|..
T Consensus 163 g~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l--~~dv~----l~~lA~~t~G~~ 236 (499)
T 2dhr_A 163 GFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPL--AEDVD----LALLAKRTPGFV 236 (499)
T ss_dssp GCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCC--CCSST----THHHHTTSCSCC
T ss_pred ccccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCC--ChHHH----HHHHHHhcCCCC
Confidence 22 23445666666665422 111 00 1146778888888888888776533211 11111 345677777765
No 252
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.89 E-value=0.032 Score=60.40 Aligned_cols=58 Identities=17% Similarity=0.214 Sum_probs=40.3
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhc----cCCceEEEEeCCCCCHHHHHHHHHHHhc
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRN----HFNEKIWVCVSEPFDDIRIAKAILESLK 272 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 272 (985)
+.-.++.|+|.+|+||||||..++....... .-..++|++....++...+.. +++.++
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g 181 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFN 181 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcC
Confidence 3557999999999999999999886322211 123688999888777766543 344443
No 253
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.88 E-value=0.023 Score=61.14 Aligned_cols=89 Identities=19% Similarity=0.288 Sum_probs=53.9
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhcc----CCceEEEEeCCCCCHHHHHHHHHHHhcCCC---------CCCCCH
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNH----FNEKIWVCVSEPFDDIRIAKAILESLKGSA---------TNAVES 281 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~---------~~~~~~ 281 (985)
.-.++.|+|.+|+||||||..++........ -..++|++....++...+.. +++.++... ....+.
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~l~~~~~~~~ 184 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALGLDIDNVMNNIYYIRAINT 184 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhCCCHHHHhccEEEEeCCCH
Confidence 3469999999999999999998863211111 23588998888777766553 345553321 011222
Q ss_pred H---HHHHHHHHHhc--CceEEEEecCC
Q 001993 282 E---TVLKQLRESIE--GKKFFLVLDDV 304 (985)
Q Consensus 282 ~---~~~~~l~~~l~--~k~~LlVlDdv 304 (985)
+ ++...+...++ .+.-+||+|.+
T Consensus 185 ~~~~~~l~~l~~~~~~~~~~~lvVIDsl 212 (324)
T 2z43_A 185 DHQIAIVDDLQELVSKDPSIKLIVVDSV 212 (324)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEEETTT
T ss_pred HHHHHHHHHHHHHHHhccCCCEEEEeCc
Confidence 2 23334444443 45668888887
No 254
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.74 E-value=0.019 Score=58.87 Aligned_cols=90 Identities=17% Similarity=0.197 Sum_probs=52.0
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhc----cCCceEEEEeCCCCCHHHHHHHHHHHhcCCC---------CCCCCH
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRN----HFNEKIWVCVSEPFDDIRIAKAILESLKGSA---------TNAVES 281 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~---------~~~~~~ 281 (985)
.-.++.|+|++|+|||||++.++....... .-..++|+.....+....+. .+++.++... ....+.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNT 101 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCH
Confidence 346999999999999999999886311111 12468888877655554433 3444443221 011122
Q ss_pred HH---HHHHHHHHhc-CceEEEEecCCC
Q 001993 282 ET---VLKQLRESIE-GKKFFLVLDDVW 305 (985)
Q Consensus 282 ~~---~~~~l~~~l~-~k~~LlVlDdv~ 305 (985)
++ ....+.+.+. .+.-+||+|++.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~lliiD~~~ 129 (243)
T 1n0w_A 102 DHQTQLLYQASAMMVESRYALLIVDSAT 129 (243)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEeCch
Confidence 22 2223444443 467788888873
No 255
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.68 E-value=0.027 Score=58.84 Aligned_cols=84 Identities=11% Similarity=0.103 Sum_probs=54.5
Q ss_pred EEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCC-----CCCCHHHH-HHHHHHH
Q 001993 218 IISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSAT-----NAVESETV-LKQLRES 291 (985)
Q Consensus 218 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~-~~~l~~~ 291 (985)
++-|.|++|+||||||.+++........=..++||+....++.. .+++++.+.. ...+.++. ...+...
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l 104 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQL 104 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence 78999999999999999988742221112358899988877754 2666655421 12345555 3333322
Q ss_pred --h-cCceEEEEecCCCC
Q 001993 292 --I-EGKKFFLVLDDVWT 306 (985)
Q Consensus 292 --l-~~k~~LlVlDdv~~ 306 (985)
+ .++.-++|+|-+-.
T Consensus 105 ~~i~~~~~~lvVIDSI~a 122 (333)
T 3io5_A 105 DAIERGEKVVVFIDSLGN 122 (333)
T ss_dssp HTCCTTCCEEEEEECSTT
T ss_pred HHhhccCceEEEEecccc
Confidence 2 45788999999843
No 256
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.66 E-value=0.0097 Score=57.77 Aligned_cols=116 Identities=16% Similarity=0.123 Sum_probs=63.8
Q ss_pred EEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCC---CCCHHHHHHHHHHHhc----CCC--CCCCC-------
Q 001993 217 TIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSE---PFDDIRIAKAILESLK----GSA--TNAVE------- 280 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~---~~~~~~~~~~i~~~l~----~~~--~~~~~------- 280 (985)
..|.|++..|.||||+|-..+- +.-++=..+.++.... ......++..+. +. +.. ....+
T Consensus 29 g~i~v~tG~GkGKTTaA~Glal--RA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~--v~~~~~g~gf~~~~~~~~~~~~~ 104 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAA--RAVGHGKNVGVVQFIKGTWPNGERNLLEPHG--VEFQVMATGFTWETQNREADTAA 104 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHH--HHHHTTCCEEEEESSCCSSCCHHHHHHGGGT--CEEEECCTTCCCCGGGHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEeeCCCCCccHHHHHHhCC--cEEEEcccccccCCCCcHHHHHH
Confidence 4666777777999999988876 3333323455554433 223333433331 10 000 01111
Q ss_pred HHHHHHHHHHHhcCc-eEEEEecCCCC---CCcccHHHHHhhhcCCCCCcEEEEEcCchh
Q 001993 281 SETVLKQLRESIEGK-KFFLVLDDVWT---EEPQNWEQLLGCLRCGSKESRILVTTRNEK 336 (985)
Q Consensus 281 ~~~~~~~l~~~l~~k-~~LlVlDdv~~---~~~~~~~~l~~~l~~~~~gs~iivTtR~~~ 336 (985)
........++.+.+. -=|||||++-. ...-..+.+...+........||+|+|...
T Consensus 105 a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap 164 (196)
T 1g5t_A 105 CMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCH 164 (196)
T ss_dssp HHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCC
T ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCc
Confidence 111233344445444 45999999821 123455677777776667788999999864
No 257
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.64 E-value=0.11 Score=57.30 Aligned_cols=92 Identities=14% Similarity=0.087 Sum_probs=56.7
Q ss_pred ccccccccccEEEEEcCCCCcchhHhhhcCCCCCCCCCeEEEeeccCCCCCCCChhhhccccccEEeEeccCCCCcCC--
Q 001993 755 DLKSKMKLVDLHLRFDSTTKTKDHRVVLECLQPPSSLEKLGIYGYAGDTISPTSDWMLSLAKLRVLTLRFCNECECLP-- 832 (985)
Q Consensus 755 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~-- 832 (985)
.+..+..|+.+.+..+- ...-...+..+.+|+.+.+.... ..+. ...+..+.+|+.+.+.++ .++.++
T Consensus 235 ~f~~~~~L~~i~lp~~v------~~I~~~aF~~~~~l~~i~l~~~i-~~i~--~~aF~~c~~L~~i~l~~~-~i~~I~~~ 304 (379)
T 4h09_A 235 AFYGMKALDEIAIPKNV------TSIGSFLLQNCTALKTLNFYAKV-KTVP--YLLCSGCSNLTKVVMDNS-AIETLEPR 304 (379)
T ss_dssp TTTTCSSCCEEEECTTC------CEECTTTTTTCTTCCEEEECCCC-SEEC--TTTTTTCTTCCEEEECCT-TCCEECTT
T ss_pred cccCCccceEEEcCCCc------cEeCccccceeehhccccccccc-eecc--cccccccccccccccccc-ccceehhh
Confidence 35566677777664221 00011234556788888885432 2231 234567889999999776 455554
Q ss_pred CCCCCCccceeeccCCCCceEeCCcc
Q 001993 833 PLGKLPCLETLVLEGMSSVKRLGNGF 858 (985)
Q Consensus 833 ~l~~l~~L~~L~L~~~~~l~~l~~~~ 858 (985)
.+.++.+|+.+.|.. +++.++...
T Consensus 305 aF~~c~~L~~i~lp~--~l~~I~~~a 328 (379)
T 4h09_A 305 VFMDCVKLSSVTLPT--ALKTIQVYA 328 (379)
T ss_dssp TTTTCTTCCEEECCT--TCCEECTTT
T ss_pred hhcCCCCCCEEEcCc--cccEEHHHH
Confidence 477889999999863 477777643
No 258
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.61 E-value=0.02 Score=61.59 Aligned_cols=57 Identities=16% Similarity=0.228 Sum_probs=39.9
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhc---------cC-----CceEEEEeCCCCCHHHHHHHHHHHhc
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRN---------HF-----NEKIWVCVSEPFDDIRIAKAILESLK 272 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---------~f-----~~~~wv~~s~~~~~~~~~~~i~~~l~ 272 (985)
.-.++.|+|.+|+||||||.+++....... .. ..++|++....++...+.. +++.++
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g 167 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAG 167 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcC
Confidence 457999999999999999999886321111 11 3688999888777766654 344443
No 259
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.58 E-value=0.011 Score=58.66 Aligned_cols=43 Identities=21% Similarity=0.261 Sum_probs=33.9
Q ss_pred cchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhc
Q 001993 182 GRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 182 Gr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
.|++.+++|.+.+.... .....+|+|+|..|+||||+++.+..
T Consensus 2 ~~~~~~~~l~~~~~~~~--------------~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIK--------------TAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp CHHHHHHHHHHHHHTSC--------------CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhc--------------cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 35667788888877432 24568999999999999999999886
No 260
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.40 E-value=0.035 Score=60.30 Aligned_cols=84 Identities=23% Similarity=0.235 Sum_probs=55.7
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCC-----CCCCCHHHHHHHHH
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSA-----TNAVESETVLKQLR 289 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~ 289 (985)
.-.++.|.|.+|+||||||..++... ...-..++|++....++.. .++.++.+. ....+.+++...+.
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~--~~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~ 145 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQA--QKAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIME 145 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHH--HHCCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHH
Confidence 34689999999999999999988742 2222368899988776654 234443321 12235566666666
Q ss_pred HHhc-CceEEEEecCCC
Q 001993 290 ESIE-GKKFFLVLDDVW 305 (985)
Q Consensus 290 ~~l~-~k~~LlVlDdv~ 305 (985)
...+ ...-+||+|.+.
T Consensus 146 ~l~~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 146 LLVRSGAIDVVVVDSVA 162 (366)
T ss_dssp HHHTTTCCSEEEEECTT
T ss_pred HHHhcCCCCEEEEeChH
Confidence 5554 445699999984
No 261
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.28 E-value=0.036 Score=59.94 Aligned_cols=84 Identities=20% Similarity=0.199 Sum_probs=54.6
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCC-----CCCCCHHHHHHHHH
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSA-----TNAVESETVLKQLR 289 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~ 289 (985)
.-.++.|+|.+|+||||||.+++.. ....=..++|++....++.. .++.++... ....+.++....+.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~--~~~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~ 132 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVAN--AQAAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 132 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 4469999999999999999999863 22222357899887766653 244444321 11234556555555
Q ss_pred HHhc-CceEEEEecCCC
Q 001993 290 ESIE-GKKFFLVLDDVW 305 (985)
Q Consensus 290 ~~l~-~k~~LlVlDdv~ 305 (985)
...+ .+.-+||+|.+-
T Consensus 133 ~l~~~~~~~lIVIDsl~ 149 (349)
T 2zr9_A 133 MLVRSGALDIIVIDSVA 149 (349)
T ss_dssp HHHTTTCCSEEEEECGG
T ss_pred HHHhcCCCCEEEEcChH
Confidence 4443 456799999984
No 262
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.25 E-value=0.052 Score=57.50 Aligned_cols=37 Identities=16% Similarity=0.183 Sum_probs=26.8
Q ss_pred CEEEEEEccCCchHHHHHHHHhcchhhhccCC-ceEEEEe
Q 001993 216 PTIISITGMGGIGKTTLAKLIFNDNEVRNHFN-EKIWVCV 254 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~ 254 (985)
-.+++|+|.+|+|||||++.++.. ....-. .++|+..
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~--~~~~~G~~v~~~~~ 72 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQ--WGTAMGKKVGLAML 72 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHH--HHHTSCCCEEEEES
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHH--HHHHcCCeEEEEeC
Confidence 359999999999999999999874 222212 4566654
No 263
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.09 E-value=0.036 Score=60.03 Aligned_cols=84 Identities=20% Similarity=0.192 Sum_probs=53.5
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCC-----CCCCCHHHHHHHHH
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSA-----TNAVESETVLKQLR 289 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~ 289 (985)
.-.++.|.|.+|+||||||.+++.... ..=..++|++....++... ++.++... ....+.+++...+.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~--~~g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~~ 134 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 134 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHHH
Confidence 446999999999999999999887422 2223688999877776442 34443321 11223455555554
Q ss_pred HHh-cCceEEEEecCCC
Q 001993 290 ESI-EGKKFFLVLDDVW 305 (985)
Q Consensus 290 ~~l-~~k~~LlVlDdv~ 305 (985)
... ..+.-+||+|.+.
T Consensus 135 ~l~~~~~~~lVVIDsl~ 151 (356)
T 1u94_A 135 ALARSGAVDVIVVDSVA 151 (356)
T ss_dssp HHHHHTCCSEEEEECGG
T ss_pred HHHhccCCCEEEEcCHH
Confidence 443 2456689999873
No 264
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.03 E-value=0.051 Score=57.28 Aligned_cols=87 Identities=15% Similarity=0.165 Sum_probs=46.1
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCC-CCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSE-PFDDIRIAKAILESLKGSATNAVESETVLKQLRESIE 293 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 293 (985)
...+++|+|.+|+||||++..++........ ..+..+.... .....+.+....+..+.......+...+...+.. +
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G-~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~-~- 180 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKH-KKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKEL-F- 180 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTC-CCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHH-G-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC-CEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHH-h-
Confidence 4579999999999999999999873221111 2345555432 2223333333333332221112233444433433 3
Q ss_pred CceEEEEecCC
Q 001993 294 GKKFFLVLDDV 304 (985)
Q Consensus 294 ~k~~LlVlDdv 304 (985)
...=++|+|-.
T Consensus 181 ~~~dlvIiDT~ 191 (296)
T 2px0_A 181 SEYDHVFVDTA 191 (296)
T ss_dssp GGSSEEEEECC
T ss_pred cCCCEEEEeCC
Confidence 44557888954
No 265
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.60 E-value=0.19 Score=53.47 Aligned_cols=54 Identities=13% Similarity=0.114 Sum_probs=39.4
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhc
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLK 272 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 272 (985)
.-.++.|.|.+|+||||+|..++.+...++ ..++|++.. .+..++...++....
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~~~ 120 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVTAG 120 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHHHT
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHHHc
Confidence 346999999999999999999986432222 467777655 567777777776543
No 266
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.58 E-value=0.039 Score=62.55 Aligned_cols=42 Identities=21% Similarity=0.249 Sum_probs=35.9
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcc
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFND 239 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 239 (985)
.++|++..++.+...+..+. -|.|+|++|+|||+||+.+++.
T Consensus 23 ~ivGq~~~i~~l~~al~~~~-------------------~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSGE-------------------SVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHTC-------------------EEEEECCSSSSHHHHHHHGGGG
T ss_pred hhHHHHHHHHHHHHHHhcCC-------------------eeEeecCchHHHHHHHHHHHHH
Confidence 68899999988888776432 6889999999999999999983
No 267
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.56 E-value=0.041 Score=59.05 Aligned_cols=85 Identities=19% Similarity=0.223 Sum_probs=47.3
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhcc-CCc-eEEEEeCCCCCHHHHHHHHHHHhcC----CCCCCCCHHHH----
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNH-FNE-KIWVCVSEPFDDIRIAKAILESLKG----SATNAVESETV---- 284 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-f~~-~~wv~~s~~~~~~~~~~~i~~~l~~----~~~~~~~~~~~---- 284 (985)
.-..++|+|.+|+|||||++.+.+. +... -+. ++++-+.+..... .++.+.+.. ...+.......
T Consensus 173 rGQr~~IvG~sG~GKTtLl~~Iar~--i~~~~~~v~~I~~lIGER~~Ev---~~~~~~~~~~vV~atadep~~~r~~~a~ 247 (422)
T 3ice_A 173 RGQRGLIVAPPKAGKTMLLQNIAQS--IAYNHPDCVLMVLLIDERPEEV---TEMQRLVKGEVVASTFDEPASRHVQVAE 247 (422)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHHHH--HHHHCTTSEEEEEEESSCHHHH---HHHHTTCSSEEEEECTTSCHHHHHHHHH
T ss_pred CCcEEEEecCCCCChhHHHHHHHHH--HhhcCCCeeEEEEEecCChHHH---HHHHHHhCeEEEEeCCCCCHHHHHHHHH
Confidence 3468999999999999999998873 3221 122 4456666544222 222333311 11111111111
Q ss_pred -HHHHHHHh--cCceEEEEecCC
Q 001993 285 -LKQLRESI--EGKKFFLVLDDV 304 (985)
Q Consensus 285 -~~~l~~~l--~~k~~LlVlDdv 304 (985)
.-.+.+++ +++.+||++||+
T Consensus 248 ~alt~AEyfrd~G~dVLil~Dsl 270 (422)
T 3ice_A 248 MVIEKAKRLVEHKKDVIILLDSI 270 (422)
T ss_dssp HHHHHHHHHHHTSCEEEEEEECH
T ss_pred HHHHHHHHHHhcCCCEEEEEeCc
Confidence 11122333 589999999998
No 268
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.42 E-value=0.0065 Score=59.28 Aligned_cols=108 Identities=17% Similarity=0.051 Sum_probs=51.1
Q ss_pred EEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCC--CCCCCCHHHHHHHHHHHhcC
Q 001993 217 TIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGS--ATNAVESETVLKQLRESIEG 294 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~--~~~~~~~~~~~~~l~~~l~~ 294 (985)
.++.|+|+.|+||||++..++...... .. .++++..... .+.....+...++.. .....+..+ +.+.+.+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~-g~-~v~~~~~~~d--~r~~~~~i~s~~g~~~~~~~~~~~~~----~~~~~~~ 75 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLG-KK-KVAVFKPKID--SRYHSTMIVSHSGNGVEAHVIERPEE----MRKYIEE 75 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHT-TC-EEEEEEEC-------CCCEECC----CEECEEESSGGG----GGGGCCT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHC-CC-eEEEEeeccc--cccCcccEEecCCCceeeEEECCHHH----HHHHhcC
Confidence 488999999999999997776532222 12 2333322210 000000000011100 000011111 2222334
Q ss_pred ceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEEEEEcCch
Q 001993 295 KKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRILVTTRNE 335 (985)
Q Consensus 295 k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~ 335 (985)
+.-+|++|.+...+.+..+.+....+. |..|++|.+..
T Consensus 76 ~~dvviIDE~Q~~~~~~~~~l~~l~~~---~~~Vi~~Gl~~ 113 (184)
T 2orw_A 76 DTRGVFIDEVQFFNPSLFEVVKDLLDR---GIDVFCAGLDL 113 (184)
T ss_dssp TEEEEEECCGGGSCTTHHHHHHHHHHT---TCEEEEEEESB
T ss_pred CCCEEEEECcccCCHHHHHHHHHHHHC---CCCEEEEeecc
Confidence 567999999976543333334333332 67899988753
No 269
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.39 E-value=0.21 Score=52.34 Aligned_cols=81 Identities=14% Similarity=0.157 Sum_probs=44.2
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhc-cCCceEEEEeCCCCCHHHHHHHHHHHh------cC-CCCCCCCHHHHH
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRN-HFNEKIWVCVSEPFDDIRIAKAILESL------KG-SATNAVESETVL 285 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-~f~~~~wv~~s~~~~~~~~~~~i~~~l------~~-~~~~~~~~~~~~ 285 (985)
....+|+|+|..|+||||||+.+.......+ ....++.|+...-+-.......+.... .. ......+.+.+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d~~~l~ 108 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKLLQ 108 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHhccccccchhhhccCcchhHHHHHH
Confidence 4678999999999999999998877322111 123344445544333334444443321 10 123445556665
Q ss_pred HHHHHHhcC
Q 001993 286 KQLRESIEG 294 (985)
Q Consensus 286 ~~l~~~l~~ 294 (985)
+.+.....+
T Consensus 109 ~~l~~l~~g 117 (290)
T 1odf_A 109 EVLNTIFNN 117 (290)
T ss_dssp HHHHHHTC-
T ss_pred HHHHHhhcc
Confidence 555554333
No 270
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.33 E-value=0.028 Score=56.07 Aligned_cols=24 Identities=25% Similarity=0.502 Sum_probs=22.0
Q ss_pred CCEEEEEEccCCchHHHHHHHHhc
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
...+|+|+|+.|+|||||++.+..
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999887
No 271
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.25 E-value=0.1 Score=57.39 Aligned_cols=57 Identities=14% Similarity=0.227 Sum_probs=37.2
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhh----hccCCceEEEEeCCCCCHHHHHHHHHHHhc
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFNDNEV----RNHFNEKIWVCVSEPFDDIRIAKAILESLK 272 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~----~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 272 (985)
.-.++.|+|.+|+|||||+..++-.... ...-..++|++....+....+ ..+++.++
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~g 237 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFG 237 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTT
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcC
Confidence 3469999999999999999976531111 112245888887766655543 33555554
No 272
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.20 E-value=0.1 Score=56.45 Aligned_cols=91 Identities=21% Similarity=0.265 Sum_probs=51.3
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhccC----CceEEEEeCCCCCHHHHHHHHHHHhcCCC------------CC
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRNHF----NEKIWVCVSEPFDDIRIAKAILESLKGSA------------TN 277 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f----~~~~wv~~s~~~~~~~~~~~i~~~l~~~~------------~~ 277 (985)
+.-.++.|+|++|+|||||++.++......... ..++|++....+....+ ..+++...... ..
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~ 207 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFN 207 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCC
Confidence 355799999999999999999988632111111 23588887665543332 33444332210 00
Q ss_pred CCCHHHHHHHHHHHhc------CceEEEEecCCC
Q 001993 278 AVESETVLKQLRESIE------GKKFFLVLDDVW 305 (985)
Q Consensus 278 ~~~~~~~~~~l~~~l~------~k~~LlVlDdv~ 305 (985)
.....++...+...+. .+.-+||+|.+-
T Consensus 208 ~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~t 241 (349)
T 1pzn_A 208 SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLT 241 (349)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSS
T ss_pred hHHHHHHHHHHHHHHHHhccccCCCCEEEEeCch
Confidence 0111233334444443 467788999884
No 273
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.12 E-value=0.021 Score=55.30 Aligned_cols=22 Identities=18% Similarity=0.400 Sum_probs=20.5
Q ss_pred EEEEEEccCCchHHHHHHHHhc
Q 001993 217 TIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
.+|.|+|++|+||||+|+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999987
No 274
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.07 E-value=0.15 Score=53.88 Aligned_cols=89 Identities=16% Similarity=0.248 Sum_probs=48.8
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHH--HHHHHHHHHhcCC---CCCCCCHHHH-HHH
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDI--RIAKAILESLKGS---ATNAVESETV-LKQ 287 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~--~~~~~i~~~l~~~---~~~~~~~~~~-~~~ 287 (985)
....+++|+|.+|+||||++..++.. ....-..+.++... .+... +.+...++..+.. .....+...+ ...
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~--l~~~g~kV~lv~~D-~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~a 178 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKM--FVDEGKSVVLAAAD-TFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDA 178 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHH--HHHTTCCEEEEEEC-TTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHH--HHhcCCEEEEEccc-cccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHH
Confidence 35689999999999999999999873 33222234455443 33322 2233344443321 1112223222 334
Q ss_pred HHHHhcCceEEEEecCCC
Q 001993 288 LRESIEGKKFFLVLDDVW 305 (985)
Q Consensus 288 l~~~l~~k~~LlVlDdv~ 305 (985)
+...+....-++|+|-.-
T Consensus 179 l~~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 179 VAHALARNKDVVIIDTAG 196 (306)
T ss_dssp HHHHHHTTCSEEEEEECC
T ss_pred HHHHHhcCCCEEEEECCC
Confidence 444455555688889774
No 275
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.05 E-value=0.028 Score=55.05 Aligned_cols=24 Identities=33% Similarity=0.538 Sum_probs=21.8
Q ss_pred CCEEEEEEccCCchHHHHHHHHhc
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
...+++|+|++|+|||||++.+..
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHh
Confidence 347899999999999999999987
No 276
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.99 E-value=0.024 Score=54.60 Aligned_cols=20 Identities=55% Similarity=0.855 Sum_probs=18.7
Q ss_pred EEEEEEccCCchHHHHHHHH
Q 001993 217 TIISITGMGGIGKTTLAKLI 236 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v 236 (985)
.+|+|+|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37999999999999999998
No 277
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=93.94 E-value=0.18 Score=50.83 Aligned_cols=46 Identities=24% Similarity=0.317 Sum_probs=31.0
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhh---hc-cCCceEEEEeCCCCCH
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFNDNEV---RN-HFNEKIWVCVSEPFDD 260 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~---~~-~f~~~~wv~~s~~~~~ 260 (985)
.-.+++|+|+.|+|||||++.++..... .. .-..++|+.....+..
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~ 73 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRP 73 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCH
Confidence 4479999999999999999999752111 11 1234778876554443
No 278
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.93 E-value=0.029 Score=54.34 Aligned_cols=22 Identities=36% Similarity=0.468 Sum_probs=20.4
Q ss_pred EEEEEEccCCchHHHHHHHHhc
Q 001993 217 TIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5899999999999999999986
No 279
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.89 E-value=0.13 Score=54.53 Aligned_cols=101 Identities=11% Similarity=0.086 Sum_probs=52.4
Q ss_pred eecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccC--CceEEEEeCCC
Q 001993 180 IRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHF--NEKIWVCVSEP 257 (985)
Q Consensus 180 ~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~~s~~ 257 (985)
++|-...+..+...+.... . ...+.+|+|.|..|+||||+|+.+.. ...... ..+..+....-
T Consensus 69 ~~~~~~~l~~~~~~~l~~~----------~---~~~p~iigI~GpsGSGKSTl~~~L~~--ll~~~~~~~~v~~i~~D~f 133 (321)
T 3tqc_A 69 YVTARQTLQQATYQFLGKP----------E---PKVPYIIGIAGSVAVGKSTTSRVLKA--LLSRWPDHPNVEVITTDGF 133 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCC----------C---CCCCEEEEEECCTTSSHHHHHHHHHH--HHTTSTTCCCEEEEEGGGG
T ss_pred hhcchHHHHHHHHHHhccC----------C---CCCCEEEEEECCCCCCHHHHHHHHHH--HhcccCCCCeEEEEeeccc
Confidence 3444455555555555332 0 35678999999999999999998875 222111 12444554332
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCc
Q 001993 258 FDDIRIAKAILESLKGSATNAVESETVLKQLRESIEGK 295 (985)
Q Consensus 258 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 295 (985)
+-....+......-........+.+.+...+.....++
T Consensus 134 ~~~~~~l~~~~~~~~~g~P~~~D~~~l~~~L~~L~~g~ 171 (321)
T 3tqc_A 134 LYSNAKLEKQGLMKRKGFPESYDMPSLLRVLNAIKSGQ 171 (321)
T ss_dssp BCCHHHHHHTTCGGGTTSGGGBCHHHHHHHHHHHHTTC
T ss_pred ccchhhhhhHHHHhhccCcccccHHHHHHHHHhhhccc
Confidence 22111111100000011234456666666666655554
No 280
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=93.83 E-value=0.027 Score=54.09 Aligned_cols=22 Identities=27% Similarity=0.243 Sum_probs=20.2
Q ss_pred EEEEEEccCCchHHHHHHHHhc
Q 001993 217 TIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
.+|+|.|++|+||||+|+.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999986
No 281
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.80 E-value=0.17 Score=54.09 Aligned_cols=54 Identities=15% Similarity=0.112 Sum_probs=38.6
Q ss_pred CEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcC
Q 001993 216 PTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKG 273 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 273 (985)
-.++.|.|.+|+||||+|..++..... .=..++|++. ..+..++...++....+
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSl--Ems~~ql~~Rlls~~~~ 99 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSL--EMSAEQLALRALSDLTS 99 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEES--SSCHHHHHHHHHHHHHC
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeC--CCCHHHHHHHHHHHhhC
Confidence 359999999999999999999874322 2134666655 45677787777766543
No 282
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.71 E-value=0.089 Score=58.42 Aligned_cols=87 Identities=18% Similarity=0.225 Sum_probs=49.4
Q ss_pred EEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCC-HHHHHHHHHHHhcC-------CCCCCCCHHHH----
Q 001993 217 TIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFD-DIRIAKAILESLKG-------SATNAVESETV---- 284 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~-~~~~~~~i~~~l~~-------~~~~~~~~~~~---- 284 (985)
+.++|+|.+|+|||||++.+....... .-+.++++-+.+..+ ..+++..+.+.=.. ...+.......
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~-~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~~ 230 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQE-HGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVAL 230 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHH-TCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhc-cCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHHH
Confidence 468999999999999999998742222 223456676766543 33444444332000 01111111111
Q ss_pred -HHHHHHHh---cCceEEEEecCC
Q 001993 285 -LKQLRESI---EGKKFFLVLDDV 304 (985)
Q Consensus 285 -~~~l~~~l---~~k~~LlVlDdv 304 (985)
.-.+.+++ +++++||++||+
T Consensus 231 ~~ltiAEyFrd~~G~~VLl~~D~i 254 (473)
T 1sky_E 231 TGLTMAEYFRDEQGQDGLLFIDNI 254 (473)
T ss_dssp HHHHHHHHHHHHSCCEEEEEEECT
T ss_pred HHHHHHHHHHHhcCCcEEEEeccH
Confidence 11233443 589999999999
No 283
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.68 E-value=0.031 Score=55.25 Aligned_cols=23 Identities=43% Similarity=0.446 Sum_probs=21.1
Q ss_pred CEEEEEEccCCchHHHHHHHHhc
Q 001993 216 PTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
..+|.|+|++|+||||+|+.++.
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 45899999999999999999986
No 284
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=93.63 E-value=0.046 Score=59.88 Aligned_cols=58 Identities=19% Similarity=0.187 Sum_probs=35.8
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhc
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
.++|.+..++.+...+...-..... ... ..........|.|+|++|+|||++|+.+++
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~-~~~-~~~~~~~~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRN-GDT-SNGVELGKSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHT-TSC-SSSCCCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhcc-ccc-cccccCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 4789998888888777310000000 000 000012345789999999999999999997
No 285
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.55 E-value=0.2 Score=51.10 Aligned_cols=39 Identities=21% Similarity=0.322 Sum_probs=28.3
Q ss_pred CEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCC
Q 001993 216 PTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSE 256 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~ 256 (985)
-.++.|.|.+|+||||||..++.. ....=..++|++...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~--~~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWN--GLKMGEPGIYVALEE 61 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHH--HHHTTCCEEEEESSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEccC
Confidence 458999999999999999888763 222223577777544
No 286
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=93.54 E-value=0.07 Score=52.41 Aligned_cols=21 Identities=38% Similarity=0.396 Sum_probs=18.2
Q ss_pred EEEEEEccCCchHHHHHHHHh
Q 001993 217 TIISITGMGGIGKTTLAKLIF 237 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~ 237 (985)
-+..|+|.+|.|||++|....
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~ 26 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMM 26 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHH
Confidence 478899999999999997754
No 287
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.48 E-value=0.046 Score=52.63 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=21.6
Q ss_pred CCEEEEEEccCCchHHHHHHHHhc
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
...+++|+|+.|+||||+++.+..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 457999999999999999999876
No 288
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.48 E-value=0.043 Score=54.28 Aligned_cols=24 Identities=38% Similarity=0.573 Sum_probs=22.1
Q ss_pred CCEEEEEEccCCchHHHHHHHHhc
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
...+|+|+|+.|+||||+|+.+..
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999987
No 289
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.33 E-value=0.048 Score=53.42 Aligned_cols=24 Identities=38% Similarity=0.603 Sum_probs=21.7
Q ss_pred CCEEEEEEccCCchHHHHHHHHhc
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
...+|.|.|++|+||||+|+.+..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999986
No 290
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.32 E-value=0.037 Score=53.69 Aligned_cols=22 Identities=14% Similarity=0.486 Sum_probs=20.6
Q ss_pred EEEEEEccCCchHHHHHHHHhc
Q 001993 217 TIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
.+++|+|+.|+|||||++.+..
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5899999999999999999986
No 291
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.31 E-value=0.032 Score=53.66 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=20.3
Q ss_pred EEEEEEccCCchHHHHHHHHhc
Q 001993 217 TIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
.+|+|+|+.|+||||+++.++.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999986
No 292
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.30 E-value=0.038 Score=53.77 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=20.8
Q ss_pred CEEEEEEccCCchHHHHHHHHhc
Q 001993 216 PTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
.+.|.|+|++|+||||+|+.++.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999986
No 293
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.26 E-value=0.04 Score=54.47 Aligned_cols=24 Identities=29% Similarity=0.473 Sum_probs=21.7
Q ss_pred CCEEEEEEccCCchHHHHHHHHhc
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
...+++|+|+.|+||||+++.++.
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 446999999999999999999986
No 294
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.25 E-value=0.33 Score=53.67 Aligned_cols=24 Identities=38% Similarity=0.623 Sum_probs=22.0
Q ss_pred CCEEEEEEccCCchHHHHHHHHhc
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
.+.+|.|+|.+|+||||++..++.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 468999999999999999998886
No 295
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.24 E-value=0.31 Score=53.81 Aligned_cols=24 Identities=29% Similarity=0.340 Sum_probs=21.6
Q ss_pred CCEEEEEEccCCchHHHHHHHHhc
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
...++.|+|.+|+||||++..++.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~ 120 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLAL 120 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999999987
No 296
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=93.24 E-value=0.29 Score=54.19 Aligned_cols=89 Identities=21% Similarity=0.279 Sum_probs=54.8
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCC-HHHHHHHHHHHhcCC-------------CCCCCC
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFD-DIRIAKAILESLKGS-------------ATNAVE 280 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~-~~~~~~~i~~~l~~~-------------~~~~~~ 280 (985)
+-+.++|.|.+|+|||+|+.++++.. .+.+-+.++++-+.+... +.++.+.+.+.=... ..+...
T Consensus 152 kGQr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rtvvV~~t~d~p~ 230 (482)
T 2ck3_D 152 KGGKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPP 230 (482)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEEEEEECTTSCH
T ss_pred cCCeeeeecCCCCChHHHHHHHHHhh-HhhCCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceEEEEEECCCCCH
Confidence 44678999999999999999998731 223345677787777653 456666666542111 011111
Q ss_pred HHH-----HHHHHHHHh---cCceEEEEecCC
Q 001993 281 SET-----VLKQLRESI---EGKKFFLVLDDV 304 (985)
Q Consensus 281 ~~~-----~~~~l~~~l---~~k~~LlVlDdv 304 (985)
... ..-.+.+++ +++.+||++||+
T Consensus 231 ~~r~~~~~~a~tiAEyfrd~~G~dVLll~Dsi 262 (482)
T 2ck3_D 231 GARARVALTGLTVAEYFRDQEGQDVLLFIDNI 262 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSCEEEEEECT
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence 111 122233444 479999999998
No 297
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=93.18 E-value=0.073 Score=60.26 Aligned_cols=22 Identities=41% Similarity=0.670 Sum_probs=20.3
Q ss_pred EEEEEccCCchHHHHHHHHhcc
Q 001993 218 IISITGMGGIGKTTLAKLIFND 239 (985)
Q Consensus 218 vv~I~G~gGiGKTtLa~~v~~~ 239 (985)
.+.|.|.+|+||||++..+...
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~ 68 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEA 68 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 8999999999999999998873
No 298
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.18 E-value=0.042 Score=56.65 Aligned_cols=25 Identities=24% Similarity=0.464 Sum_probs=22.1
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhc
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
....+|+|.|+.|+||||+|+.+..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999999876
No 299
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.09 E-value=0.036 Score=53.77 Aligned_cols=21 Identities=48% Similarity=0.694 Sum_probs=19.1
Q ss_pred EEEEEccCCchHHHHHHHHhc
Q 001993 218 IISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 218 vv~I~G~gGiGKTtLa~~v~~ 238 (985)
.|.|+|+.|+|||||++.+..
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998876
No 300
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=93.08 E-value=0.33 Score=58.07 Aligned_cols=103 Identities=17% Similarity=0.218 Sum_probs=57.5
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
++.|.++.+++|.+.+.-.-. ....... .+-...+-|.++|++|.|||.+|+.+++. .... ++.++.
T Consensus 478 diggl~~~k~~l~e~v~~p~~---~p~~f~~-~g~~~~~gvLl~GPPGtGKT~lAkaiA~e--~~~~-----f~~v~~-- 544 (806)
T 3cf2_A 478 DIGGLEDVKRELQELVQYPVE---HPDKFLK-FGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQAN-----FISIKG-- 544 (806)
T ss_dssp TCCSCHHHHHHHTTTTTTTTT---CSGGGSS-SCCCCCSCCEEESSTTSSHHHHHHHHHHT--TTCE-----EEECCH--
T ss_pred HhCCHHHHHHHHHHHHHhhhh---CHHHHHh-cCCCCCceEEEecCCCCCchHHHHHHHHH--hCCc-----eEEecc--
Confidence 577888888888776643220 0000000 01223456789999999999999999983 3222 233321
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCC
Q 001993 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVW 305 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~ 305 (985)
.+++.. ........+...+...-+..+++|+||+++
T Consensus 545 ------~~l~s~-----~vGese~~vr~lF~~Ar~~~P~IifiDEiD 580 (806)
T 3cf2_A 545 ------PELLTM-----WFGESEANVREIFDKARQAAPCVLFFDELD 580 (806)
T ss_dssp ------HHHHTT-----TCSSCHHHHHHHHHHHHTTCSEEEECSCGG
T ss_pred ------chhhcc-----ccchHHHHHHHHHHHHHHcCCceeechhhh
Confidence 111111 112223334444444445679999999985
No 301
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=93.07 E-value=0.3 Score=52.10 Aligned_cols=25 Identities=36% Similarity=0.597 Sum_probs=22.7
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhc
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
+...+++|+|+.|+||||+++.++.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999999987
No 302
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.06 E-value=0.043 Score=52.69 Aligned_cols=24 Identities=33% Similarity=0.584 Sum_probs=20.6
Q ss_pred CCEEEEEEccCCchHHHHHHHHhc
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
...+++|+|+.|+|||||++.++.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHcc
Confidence 346999999999999999997554
No 303
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.04 E-value=0.049 Score=53.02 Aligned_cols=24 Identities=42% Similarity=0.569 Sum_probs=21.6
Q ss_pred CCEEEEEEccCCchHHHHHHHHhc
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
....|+|+|+.|+||||+|+.+..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999886
No 304
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.01 E-value=0.058 Score=53.39 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=22.6
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhc
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
....+|+|.|++|+||||+|+.++.
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999999986
No 305
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.00 E-value=0.086 Score=55.35 Aligned_cols=25 Identities=40% Similarity=0.643 Sum_probs=22.5
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhc
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
....+|.|.|++|+||||+|+.+..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999999976
No 306
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=92.99 E-value=0.042 Score=53.78 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=20.4
Q ss_pred EEEEEEccCCchHHHHHHHHhc
Q 001993 217 TIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
.+|.|.|++|+||||+|+.+..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999987
No 307
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=92.96 E-value=0.042 Score=54.42 Aligned_cols=23 Identities=30% Similarity=0.599 Sum_probs=21.1
Q ss_pred CEEEEEEccCCchHHHHHHHHhc
Q 001993 216 PTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
..+|+|+|+.|+||||+|+.+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 308
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=92.94 E-value=0.05 Score=54.17 Aligned_cols=24 Identities=33% Similarity=0.688 Sum_probs=21.7
Q ss_pred CCEEEEEEccCCchHHHHHHHHhc
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
...+++|+|+.|+|||||++.+..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~ 30 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFK 30 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHHHHh
Confidence 346899999999999999999986
No 309
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=92.87 E-value=0.71 Score=62.62 Aligned_cols=140 Identities=14% Similarity=0.086 Sum_probs=72.9
Q ss_pred EEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCce
Q 001993 217 TIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKK 296 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 296 (985)
+-|.++|++|.|||++|+.+.... ..+ ..+.++.+...+...++..+-..+.......... ..-.-.+++
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~---~~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~------~~P~~~gk~ 1337 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNS---SLY-DVVGINFSKDTTTEHILSALHRHTNYVTTSKGLT------LLPKSDIKN 1337 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC---SSC-EEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEE------EEEBSSSSC
T ss_pred CeEEEECCCCCCHHHHHHHHHhcC---CCC-ceEEEEeecCCCHHHHHHHHHHHhhhccccCCcc------ccCCCCCce
Confidence 467899999999999997776531 122 3456777777776666555554432210000000 000003678
Q ss_pred EEEEecCCCCCCcc------cHHHHHhhhcCCC-----CC-------cEEEEEcCchh------hHHhhcCcccccccCC
Q 001993 297 FFLVLDDVWTEEPQ------NWEQLLGCLRCGS-----KE-------SRILVTTRNEK------VAIAIGTTKFNIIPIE 352 (985)
Q Consensus 297 ~LlVlDdv~~~~~~------~~~~l~~~l~~~~-----~g-------s~iivTtR~~~------v~~~~~~~~~~~~~l~ 352 (985)
+++++||+.-...+ ..+-++..+..++ .+ ..+|-++-... +...+.. ....+.+.
T Consensus 1338 ~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR-rf~vi~i~ 1416 (2695)
T 4akg_A 1338 LVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR-HAAILYLG 1416 (2695)
T ss_dssp EEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT-TEEEEECC
T ss_pred EEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh-eeeEEEeC
Confidence 99999997432222 3444555544321 11 23333442221 1111111 12467777
Q ss_pred CCChHHHHHHHHHHh
Q 001993 353 LLSDEDCWSIFSQLA 367 (985)
Q Consensus 353 ~L~~~e~~~Lf~~~~ 367 (985)
..+.++-..+|....
T Consensus 1417 ~P~~~~l~~I~~~il 1431 (2695)
T 4akg_A 1417 YPSGKSLSQIYEIYY 1431 (2695)
T ss_dssp CCTTTHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 777777777776543
No 310
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=92.86 E-value=0.054 Score=54.02 Aligned_cols=24 Identities=42% Similarity=0.600 Sum_probs=21.8
Q ss_pred CCEEEEEEccCCchHHHHHHHHhc
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
...+|+|+|+.|+|||||++.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999886
No 311
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=92.82 E-value=0.048 Score=52.07 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=20.9
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhc
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
....+|+|.|+.|+||||+|+.+..
T Consensus 5 ~~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 5 HHMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp ---CEEEEESCTTSSHHHHHHHHHH
T ss_pred cccceEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999999986
No 312
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=92.82 E-value=0.053 Score=52.97 Aligned_cols=22 Identities=36% Similarity=0.539 Sum_probs=20.1
Q ss_pred EEEEEEccCCchHHHHHHHHhc
Q 001993 217 TIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
.+++|+|+.|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999974
No 313
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=92.81 E-value=0.053 Score=53.73 Aligned_cols=22 Identities=27% Similarity=0.537 Sum_probs=20.5
Q ss_pred EEEEEEccCCchHHHHHHHHhc
Q 001993 217 TIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
.+++|+|+.|+|||||++.+..
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHh
Confidence 5899999999999999999886
No 314
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=92.76 E-value=0.061 Score=53.43 Aligned_cols=25 Identities=44% Similarity=0.571 Sum_probs=22.3
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhc
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
....+|+|+|++|+||||+|+.+..
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457999999999999999999886
No 315
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.76 E-value=0.059 Score=53.26 Aligned_cols=25 Identities=48% Similarity=0.678 Sum_probs=22.8
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhc
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
....+|+|+|+.|+||||+|+.+..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999999986
No 316
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=92.74 E-value=0.046 Score=53.41 Aligned_cols=22 Identities=32% Similarity=0.703 Sum_probs=20.6
Q ss_pred EEEEEEccCCchHHHHHHHHhc
Q 001993 217 TIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
.+|.|.|++|+||||+|+.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999987
No 317
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=92.73 E-value=0.23 Score=55.22 Aligned_cols=89 Identities=20% Similarity=0.213 Sum_probs=56.3
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCC-HHHHHHHHHHHhcCC--------------CCCCC
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFD-DIRIAKAILESLKGS--------------ATNAV 279 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~-~~~~~~~i~~~l~~~--------------~~~~~ 279 (985)
+-+.++|.|.+|+|||+|+.++++.. .+.+-+.++++-+.+... ..++.+.+.+.=... ..+..
T Consensus 164 kGqr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtvvV~~t~d~p 242 (498)
T 1fx0_B 164 RGGKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEP 242 (498)
T ss_dssp TTCCEEEEECSSSSHHHHHHHHHHHT-TTTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEEEEEECTTSC
T ss_pred cCCeEEeecCCCCCchHHHHHHHHHH-HhhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceEEEEeCCCCC
Confidence 44578999999999999999998731 223446788888887664 456666666531111 01111
Q ss_pred C-----HHHHHHHHHHHhc---CceEEEEecCC
Q 001993 280 E-----SETVLKQLRESIE---GKKFFLVLDDV 304 (985)
Q Consensus 280 ~-----~~~~~~~l~~~l~---~k~~LlVlDdv 304 (985)
. .....-.+.++++ ++.+||++||+
T Consensus 243 ~~~R~~~~~~altiAEyfrd~~G~dVLl~~Dsi 275 (498)
T 1fx0_B 243 PGARMRVGLTALTMAEYFRDVNEQDVLLFIDNI 275 (498)
T ss_dssp HHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECS
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence 1 1112333445663 68999999998
No 318
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.73 E-value=0.06 Score=53.18 Aligned_cols=25 Identities=24% Similarity=0.204 Sum_probs=22.0
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhc
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
....+|.|+|++|+||||+|+.+..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999999986
No 319
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=92.73 E-value=0.045 Score=52.97 Aligned_cols=24 Identities=42% Similarity=0.490 Sum_probs=21.2
Q ss_pred CCEEEEEEccCCchHHHHHHHHhc
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
...+|.|+|++|+||||+|+.+..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHH
Confidence 346789999999999999999986
No 320
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=92.71 E-value=0.057 Score=52.91 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=20.8
Q ss_pred CEEEEEEccCCchHHHHHHHHhc
Q 001993 216 PTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
..+|+|.|++|+||||+|+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999876
No 321
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=92.68 E-value=0.082 Score=57.17 Aligned_cols=112 Identities=13% Similarity=0.225 Sum_probs=61.1
Q ss_pred EEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHH-HHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCc
Q 001993 217 TIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIR-IAKAILESLKGSATNAVESETVLKQLRESIEGK 295 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~-~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 295 (985)
.+++|+|+.|+||||+.+.+.. .+.......+ +.+.+...... -...++.+.. ...+.......+...|...
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g--~~~~~~~~~i-~t~ed~~e~~~~~~~~~v~q~~----~~~~~~~~~~~La~aL~~~ 196 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLD--YLNNTKYHHI-LTIEDPIEFVHESKKCLVNQRE----VHRDTLGFSEALRSALRED 196 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH--HHHHHCCCEE-EEEESSCCSCCCCSSSEEEEEE----BTTTBSCHHHHHHHHTTSC
T ss_pred CEEEEECCCCCCHHHHHHHHHh--cccCCCCcEE-EEccCcHHhhhhccccceeeee----eccccCCHHHHHHHHhhhC
Confidence 5999999999999999999876 2322212222 22222111000 0000000000 0001122344677888889
Q ss_pred eEEEEecCCCCCCcccHHHHHhhhcCCCCCcEEEEEcCchhhHHh
Q 001993 296 KFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRILVTTRNEKVAIA 340 (985)
Q Consensus 296 ~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~ 340 (985)
+=+|++|+.- +.+.++.+..... .|.-||+||-.......
T Consensus 197 PdvillDEp~--d~e~~~~~~~~~~---~G~~vl~t~H~~~~~~~ 236 (356)
T 3jvv_A 197 PDIILVGEMR--DLETIRLALTAAE---TGHLVFGTLHTTSAAKT 236 (356)
T ss_dssp CSEEEESCCC--SHHHHHHHHHHHH---TTCEEEEEESCSSHHHH
T ss_pred cCEEecCCCC--CHHHHHHHHHHHh---cCCEEEEEEccChHHHH
Confidence 9999999995 3444554444432 35568999887766543
No 322
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=92.66 E-value=0.079 Score=56.53 Aligned_cols=45 Identities=22% Similarity=0.308 Sum_probs=32.1
Q ss_pred ecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhc
Q 001993 181 RGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 181 vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
|+.+.-.+++++.+...- . .+....+.|+|++|+||||+++.++.
T Consensus 2 ~~~~~L~~~il~~l~~~i----------~---~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRI----------E---DNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CCHHHHHHHHHHHHHHTT----------T---TCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHh----------c---cCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 344555666766664322 0 24456799999999999999999887
No 323
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=92.65 E-value=0.041 Score=58.91 Aligned_cols=53 Identities=23% Similarity=0.250 Sum_probs=35.4
Q ss_pred HHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhc-cCCc-eEEEEeCCC
Q 001993 187 QNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRN-HFNE-KIWVCVSEP 257 (985)
Q Consensus 187 ~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-~f~~-~~wv~~s~~ 257 (985)
--++++.+..-. .-+.++|+|.+|+|||+|+..+++. +.. +-+. ++++-+.+.
T Consensus 162 GiraID~l~Pig----------------rGQR~lIfg~~g~GKT~Ll~~Ia~~--i~~~~~dv~~V~~lIGER 216 (427)
T 3l0o_A 162 STRLIDLFAPIG----------------KGQRGMIVAPPKAGKTTILKEIANG--IAENHPDTIRIILLIDER 216 (427)
T ss_dssp HHHHHHHHSCCB----------------TTCEEEEEECTTCCHHHHHHHHHHH--HHHHCTTSEEEEEECSCC
T ss_pred cchhhhhccccc----------------CCceEEEecCCCCChhHHHHHHHHH--HhhcCCCeEEEEEEeccC
Confidence 346778776432 3457899999999999999999883 322 2222 345656543
No 324
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=92.63 E-value=0.049 Score=54.05 Aligned_cols=24 Identities=33% Similarity=0.553 Sum_probs=21.7
Q ss_pred CCEEEEEEccCCchHHHHHHHHhc
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
...+|+|+|++|+||||+++.+..
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999986
No 325
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=92.63 E-value=0.058 Score=53.51 Aligned_cols=23 Identities=39% Similarity=0.678 Sum_probs=21.0
Q ss_pred CEEEEEEccCCchHHHHHHHHhc
Q 001993 216 PTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
..+++|+|+.|+||||+++.+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999876
No 326
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=92.62 E-value=0.056 Score=52.19 Aligned_cols=22 Identities=55% Similarity=0.667 Sum_probs=19.9
Q ss_pred EEEEEccCCchHHHHHHHHhcc
Q 001993 218 IISITGMGGIGKTTLAKLIFND 239 (985)
Q Consensus 218 vv~I~G~gGiGKTtLa~~v~~~ 239 (985)
.++|+|+.|+|||||++.++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998863
No 327
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.61 E-value=0.053 Score=53.27 Aligned_cols=23 Identities=35% Similarity=0.424 Sum_probs=21.0
Q ss_pred CEEEEEEccCCchHHHHHHHHhc
Q 001993 216 PTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
..+|+|+|++|+||||+|+.++.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 328
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=92.60 E-value=0.12 Score=51.36 Aligned_cols=22 Identities=32% Similarity=0.640 Sum_probs=20.7
Q ss_pred EEEEEEccCCchHHHHHHHHhc
Q 001993 217 TIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
.+|+|.|++|+||||+|+.+..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 329
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=92.55 E-value=0.33 Score=51.01 Aligned_cols=89 Identities=16% Similarity=0.090 Sum_probs=48.9
Q ss_pred CEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC-CHHHHHHHHHHHhcCC---CCCCCCHHHHHHHHHHH
Q 001993 216 PTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF-DDIRIAKAILESLKGS---ATNAVESETVLKQLRES 291 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~---~~~~~~~~~~~~~l~~~ 291 (985)
..+++++|.+|+||||++..++.. ....=..+.++...... .....+....+..+.. .....+...+.....+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~--~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~ 175 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYF--YKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEK 175 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHH--HHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHH
Confidence 679999999999999999999873 32222245566554322 2233334444443322 11223444444333344
Q ss_pred hc-CceEEEEecCCCC
Q 001993 292 IE-GKKFFLVLDDVWT 306 (985)
Q Consensus 292 l~-~k~~LlVlDdv~~ 306 (985)
++ ..-=++|+|-.-.
T Consensus 176 ~~~~~~D~ViIDTpg~ 191 (297)
T 1j8m_F 176 FLSEKMEIIIVDTAGR 191 (297)
T ss_dssp HHHTTCSEEEEECCCS
T ss_pred HHhCCCCEEEEeCCCC
Confidence 43 3333788887643
No 330
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=92.54 E-value=0.047 Score=53.21 Aligned_cols=22 Identities=45% Similarity=0.659 Sum_probs=20.3
Q ss_pred EEEEEEccCCchHHHHHHHHhc
Q 001993 217 TIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
++++|+|+.|+|||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
No 331
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.53 E-value=0.063 Score=55.55 Aligned_cols=23 Identities=35% Similarity=0.624 Sum_probs=21.2
Q ss_pred CEEEEEEccCCchHHHHHHHHhc
Q 001993 216 PTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
..+|.|+|++|+||||+|+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 332
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=92.51 E-value=0.31 Score=51.20 Aligned_cols=86 Identities=13% Similarity=0.132 Sum_probs=45.6
Q ss_pred CEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHH--HHHHHHHHHhcCCC---CCCCCHHHHHH-HHH
Q 001993 216 PTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDI--RIAKAILESLKGSA---TNAVESETVLK-QLR 289 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~--~~~~~i~~~l~~~~---~~~~~~~~~~~-~l~ 289 (985)
..+++|+|.+|+||||++..++.. ....=..+.++... ..... ..+....+..+... ....+..++.. .+.
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~--~~~~~~~v~l~~~d-~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~ 174 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALY--YKGKGRRPLLVAAD-TQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEE 174 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHH--HHHTTCCEEEEECC-SSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEecCC-cccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHH
Confidence 469999999999999999999873 33222234455443 22222 12333344433221 11233444433 233
Q ss_pred HHhcCceEEEEecCC
Q 001993 290 ESIEGKKFFLVLDDV 304 (985)
Q Consensus 290 ~~l~~k~~LlVlDdv 304 (985)
.......=++|+|-.
T Consensus 175 ~~~~~~~D~viiDtp 189 (295)
T 1ls1_A 175 KARLEARDLILVDTA 189 (295)
T ss_dssp HHHHHTCCEEEEECC
T ss_pred HHHhCCCCEEEEeCC
Confidence 332244457888876
No 333
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=92.50 E-value=0.1 Score=53.70 Aligned_cols=25 Identities=32% Similarity=0.574 Sum_probs=22.5
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhc
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
....+|.|+|++|+||||+|+.+..
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999999986
No 334
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=92.50 E-value=0.06 Score=55.44 Aligned_cols=22 Identities=32% Similarity=0.226 Sum_probs=20.3
Q ss_pred EEEEEEccCCchHHHHHHHHhc
Q 001993 217 TIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
.++.|+|++|+||||||+.++.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 4789999999999999999986
No 335
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=92.44 E-value=0.048 Score=52.55 Aligned_cols=21 Identities=38% Similarity=0.526 Sum_probs=19.7
Q ss_pred EEEEEccCCchHHHHHHHHhc
Q 001993 218 IISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 218 vv~I~G~gGiGKTtLa~~v~~ 238 (985)
.|.|+|++|+||||+|+.++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999986
No 336
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.41 E-value=0.065 Score=53.18 Aligned_cols=22 Identities=45% Similarity=0.608 Sum_probs=20.2
Q ss_pred EEEEEEccCCchHHHHHHHHhc
Q 001993 217 TIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
No 337
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=92.40 E-value=0.083 Score=53.99 Aligned_cols=24 Identities=21% Similarity=0.101 Sum_probs=21.8
Q ss_pred CCEEEEEEccCCchHHHHHHHHhc
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
...+|+|.|++|+||||+|+.+..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999986
No 338
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.38 E-value=0.085 Score=52.63 Aligned_cols=24 Identities=25% Similarity=0.506 Sum_probs=21.8
Q ss_pred CCEEEEEEccCCchHHHHHHHHhc
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
...+|+|.|+.|+||||+|+.+..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999987
No 339
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=92.37 E-value=0.45 Score=54.43 Aligned_cols=56 Identities=11% Similarity=-0.008 Sum_probs=38.7
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcC
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKG 273 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 273 (985)
.-.++.|.|.+|+||||+|.+++.+...+ +=..++|++... +..++...++....+
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~E~--s~~~l~~r~~~~~~~ 296 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAMLEE--SVEETAEDLIGLHNR 296 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEESSS--CHHHHHHHHHHHHTT
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEeccC--CHHHHHHHHHHHHcC
Confidence 44689999999999999999998742221 112577776544 566777777665544
No 340
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=92.36 E-value=0.055 Score=53.52 Aligned_cols=21 Identities=38% Similarity=0.474 Sum_probs=19.7
Q ss_pred EEEEEccCCchHHHHHHHHhc
Q 001993 218 IISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 218 vv~I~G~gGiGKTtLa~~v~~ 238 (985)
.|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999987
No 341
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=92.35 E-value=0.078 Score=51.58 Aligned_cols=25 Identities=32% Similarity=0.582 Sum_probs=22.4
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhc
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
....+|.|+|++|+||||+++.++.
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3457899999999999999999987
No 342
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.34 E-value=0.097 Score=49.68 Aligned_cols=24 Identities=25% Similarity=0.271 Sum_probs=21.4
Q ss_pred CCEEEEEEccCCchHHHHHHHHhc
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
..++++|+|..|+|||||+..+..
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999999987
No 343
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=92.33 E-value=0.068 Score=53.25 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=23.0
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhc
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
...++|.|.|++|+||||.|+.++.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 5678999999999999999999886
No 344
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=92.27 E-value=0.062 Score=53.24 Aligned_cols=21 Identities=38% Similarity=0.536 Sum_probs=19.6
Q ss_pred EEEEEccCCchHHHHHHHHhc
Q 001993 218 IISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 218 vv~I~G~gGiGKTtLa~~v~~ 238 (985)
+|+|+|+.|+||||+++.+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 799999999999999999875
No 345
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.24 E-value=0.049 Score=52.96 Aligned_cols=21 Identities=24% Similarity=0.483 Sum_probs=19.6
Q ss_pred EEEEEccCCchHHHHHHHHhc
Q 001993 218 IISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 218 vv~I~G~gGiGKTtLa~~v~~ 238 (985)
+|.|+|++|+||||+|+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999986
No 346
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.21 E-value=0.066 Score=54.88 Aligned_cols=23 Identities=30% Similarity=0.255 Sum_probs=21.1
Q ss_pred CEEEEEEccCCchHHHHHHHHhc
Q 001993 216 PTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
..+++|+|++|+|||||++.++.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999999999984
No 347
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=92.21 E-value=0.46 Score=52.75 Aligned_cols=25 Identities=32% Similarity=0.526 Sum_probs=22.6
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhc
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
..+++|.|+|.+|+||||++..++.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~ 122 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGK 122 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999999987
No 348
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=92.17 E-value=0.53 Score=52.01 Aligned_cols=25 Identities=40% Similarity=0.426 Sum_probs=22.5
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcc
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFND 239 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~ 239 (985)
...+|.++|.+|+||||++..++..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999999873
No 349
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=92.14 E-value=0.079 Score=51.76 Aligned_cols=24 Identities=13% Similarity=0.498 Sum_probs=21.7
Q ss_pred CCEEEEEEccCCchHHHHHHHHhc
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
..++++|+|+.|+|||||++.+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 457899999999999999999886
No 350
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.14 E-value=0.072 Score=51.77 Aligned_cols=22 Identities=27% Similarity=0.300 Sum_probs=20.4
Q ss_pred EEEEEEccCCchHHHHHHHHhc
Q 001993 217 TIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
.+|+|+|++|+||||+|+.+..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999986
No 351
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.13 E-value=0.06 Score=52.97 Aligned_cols=22 Identities=36% Similarity=0.425 Sum_probs=20.6
Q ss_pred EEEEEEccCCchHHHHHHHHhc
Q 001993 217 TIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
.+|+|.|++|+||||+|+.+..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999986
No 352
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.13 E-value=0.081 Score=51.69 Aligned_cols=24 Identities=29% Similarity=0.465 Sum_probs=21.6
Q ss_pred CCEEEEEEccCCchHHHHHHHHhc
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
...+|+|+|++|+||||+|+.+..
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999999986
No 353
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=92.11 E-value=0.45 Score=53.36 Aligned_cols=56 Identities=13% Similarity=0.075 Sum_probs=38.7
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcC
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKG 273 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 273 (985)
.-.++.|.|.+|+||||+|..++.+.... .=..++|++.. .+...+...++....+
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~-~g~~vl~~slE--~~~~~l~~R~~~~~~~ 254 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALK-EGVGVGIYSLE--MPAAQLTLRMMCSEAR 254 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESS--SCHHHHHHHHHHHHTT
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEECC--CCHHHHHHHHHHHHcC
Confidence 34699999999999999999998743221 11247777654 4566777777655443
No 354
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=92.09 E-value=0.33 Score=56.30 Aligned_cols=104 Identities=17% Similarity=0.184 Sum_probs=54.1
Q ss_pred EEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh----
Q 001993 217 TIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESI---- 292 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l---- 292 (985)
+++.|+|.+|.||||++..+... .... ...+.+.+....... .+.+.++.. ..+...+.......+
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~--l~~~-g~~Vl~~ApT~~Aa~----~L~e~~~~~---a~Tih~ll~~~~~~~~~~~ 274 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADL--AESL-GLEVGLCAPTGKAAR----RLGEVTGRT---ASTVHRLLGYGPQGFRHNH 274 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHH--HHHT-TCCEEEEESSHHHHH----HHHHHHTSC---EEEHHHHTTEETTEESCSS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH--HHhc-CCeEEEecCcHHHHH----HhHhhhccc---HHHHHHHHcCCcchhhhhh
Confidence 48899999999999999998863 2222 233444443322222 222222111 111111000000000
Q ss_pred --cCceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEEEEEcC
Q 001993 293 --EGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRILVTTR 333 (985)
Q Consensus 293 --~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR 333 (985)
..+--+||+|++...+...+..+...++ .+.++|+.--
T Consensus 275 ~~~~~~dvlIIDEasml~~~~~~~Ll~~~~---~~~~lilvGD 314 (574)
T 3e1s_A 275 LEPAPYDLLIVDEVSMMGDALMLSLLAAVP---PGARVLLVGD 314 (574)
T ss_dssp SSCCSCSEEEECCGGGCCHHHHHHHHTTSC---TTCEEEEEEC
T ss_pred cccccCCEEEEcCccCCCHHHHHHHHHhCc---CCCEEEEEec
Confidence 0123489999997766666666666654 4667777543
No 355
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.08 E-value=0.16 Score=49.65 Aligned_cols=21 Identities=33% Similarity=0.627 Sum_probs=19.7
Q ss_pred EEEEEccCCchHHHHHHHHhc
Q 001993 218 IISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 218 vv~I~G~gGiGKTtLa~~v~~ 238 (985)
+|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 356
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=92.07 E-value=0.052 Score=52.62 Aligned_cols=23 Identities=39% Similarity=0.499 Sum_probs=16.9
Q ss_pred CEEEEEEccCCchHHHHHHHHhc
Q 001993 216 PTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
..+|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 357
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=92.06 E-value=0.64 Score=51.02 Aligned_cols=45 Identities=24% Similarity=0.285 Sum_probs=33.2
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhc
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
.++|....++++.+.+..-. ..+.. |.|.|..|+|||++|+.+..
T Consensus 138 ~~ig~s~~m~~l~~~i~~~a--------------~~~~~-vli~Ge~GtGK~~lAr~ih~ 182 (387)
T 1ny5_A 138 EYVFESPKMKEILEKIKKIS--------------CAECP-VLITGESGVGKEVVARLIHK 182 (387)
T ss_dssp CCCCCSHHHHHHHHHHHHHT--------------TCCSC-EEEECSTTSSHHHHHHHHHH
T ss_pred hhhhccHHhhHHHHHHHHhc--------------CCCCC-eEEecCCCcCHHHHHHHHHH
Confidence 46677777788777765433 12333 49999999999999999876
No 358
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=92.06 E-value=0.077 Score=56.10 Aligned_cols=24 Identities=25% Similarity=0.480 Sum_probs=22.0
Q ss_pred CCEEEEEEccCCchHHHHHHHHhc
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
...+++|+|++|+||||+++.++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 457999999999999999999986
No 359
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.04 E-value=0.053 Score=52.03 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=20.1
Q ss_pred EEEEEEccCCchHHHHHHHHhc
Q 001993 217 TIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
.+|.|+|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999986
No 360
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.03 E-value=0.069 Score=53.89 Aligned_cols=22 Identities=41% Similarity=0.635 Sum_probs=20.4
Q ss_pred EEEEEEccCCchHHHHHHHHhc
Q 001993 217 TIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
.+|+|+|+.|+||||+|+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999876
No 361
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=91.97 E-value=0.069 Score=53.67 Aligned_cols=23 Identities=26% Similarity=0.277 Sum_probs=20.9
Q ss_pred CEEEEEEccCCchHHHHHHHHhc
Q 001993 216 PTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
...|.|.|++|+||||+|+.++.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999986
No 362
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=91.93 E-value=0.098 Score=52.66 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=22.3
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcc
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFND 239 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~ 239 (985)
....|+|+|.+|+|||||+..+...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999874
No 363
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=91.92 E-value=0.069 Score=50.90 Aligned_cols=21 Identities=29% Similarity=0.371 Sum_probs=19.6
Q ss_pred EEEEEccCCchHHHHHHHHhc
Q 001993 218 IISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 218 vv~I~G~gGiGKTtLa~~v~~ 238 (985)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999986
No 364
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=91.90 E-value=0.085 Score=56.00 Aligned_cols=25 Identities=32% Similarity=0.535 Sum_probs=22.4
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhc
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
....+|+|+|..|+|||||++.+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 3557999999999999999999886
No 365
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=91.88 E-value=0.09 Score=53.83 Aligned_cols=24 Identities=33% Similarity=0.616 Sum_probs=21.6
Q ss_pred CCEEEEEEccCCchHHHHHHHHhc
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
...+|+|+|+.|+|||||++.+..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 447999999999999999999876
No 366
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=91.84 E-value=0.062 Score=52.99 Aligned_cols=22 Identities=36% Similarity=0.640 Sum_probs=20.3
Q ss_pred EEEEEEccCCchHHHHHHHHhc
Q 001993 217 TIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
++++|+|+.|+|||||++.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999999876
No 367
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=91.83 E-value=0.091 Score=50.72 Aligned_cols=24 Identities=33% Similarity=0.523 Sum_probs=21.5
Q ss_pred CCEEEEEEccCCchHHHHHHHHhc
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
...+|+|+|+.|+||||+++.+..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999987
No 368
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=91.82 E-value=0.06 Score=58.51 Aligned_cols=43 Identities=16% Similarity=0.203 Sum_probs=31.5
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhc
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
+++|.+..++.+...+.... ..-|.|+|++|+|||++|+.+++
T Consensus 25 ~i~G~~~~~~~l~~~~~~~~-----------------~~~vLl~G~~GtGKT~la~~la~ 67 (350)
T 1g8p_A 25 AIVGQEDMKLALLLTAVDPG-----------------IGGVLVFGDRGTGKSTAVRALAA 67 (350)
T ss_dssp GSCSCHHHHHHHHHHHHCGG-----------------GCCEEEECCGGGCTTHHHHHHHH
T ss_pred hccChHHHHHHHHHHhhCCC-----------------CceEEEECCCCccHHHHHHHHHH
Confidence 68999886665544443211 12389999999999999999987
No 369
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=91.77 E-value=0.074 Score=51.99 Aligned_cols=25 Identities=32% Similarity=0.578 Sum_probs=22.4
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhc
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
....+|+|+|+.|+||||+|+.+..
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999999886
No 370
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=91.71 E-value=0.52 Score=47.67 Aligned_cols=89 Identities=18% Similarity=0.280 Sum_probs=45.8
Q ss_pred EEEEEEccCCchHHHHHHHHhcchhh-hccCC-ceEEEEeCCCCCHHHHHHHHHHHhcCCCC---------------CC-
Q 001993 217 TIISITGMGGIGKTTLAKLIFNDNEV-RNHFN-EKIWVCVSEPFDDIRIAKAILESLKGSAT---------------NA- 278 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~f~-~~~wv~~s~~~~~~~~~~~i~~~l~~~~~---------------~~- 278 (985)
+.+.|+|..|+||||+...+.-+... ..... ..+.+-.........+...+...++.... ..
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 156 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPHA 156 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEEECCCSSS
T ss_pred CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceEEEeechhhccCCCCC
Confidence 37899999999999876555432111 12222 23333333333333444445444332100 00
Q ss_pred ----CCHHHHHHHHHHHhcCceEEEEecCCCC
Q 001993 279 ----VESETVLKQLRESIEGKKFFLVLDDVWT 306 (985)
Q Consensus 279 ----~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 306 (985)
...+.+...+...+.+ --+||+|+++.
T Consensus 157 ~Ivv~Tpg~l~~~l~~~l~~-~~~lVlDEah~ 187 (235)
T 3llm_A 157 SIMFCTVGVLLRKLEAGIRG-ISHVIVDEIHE 187 (235)
T ss_dssp EEEEEEHHHHHHHHHHCCTT-CCEEEECCTTS
T ss_pred eEEEECHHHHHHHHHhhhcC-CcEEEEECCcc
Confidence 1345555555544333 34789999975
No 371
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=91.68 E-value=0.08 Score=52.70 Aligned_cols=24 Identities=29% Similarity=0.516 Sum_probs=21.8
Q ss_pred CCEEEEEEccCCchHHHHHHHHhc
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
...+|+|.|+.|+||||+|+.+..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 356899999999999999999987
No 372
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=91.64 E-value=0.2 Score=65.52 Aligned_cols=85 Identities=20% Similarity=0.189 Sum_probs=56.3
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCC-----CCCCCHHHHHHHH
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSA-----TNAVESETVLKQL 288 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l 288 (985)
+..++|.|+|++|+|||+||.++..... .+=..++|+++...++... ++.++.+- ......++....+
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~ala~ea~--~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~ 1497 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1497 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHH
Confidence 3567999999999999999999987432 2223578888887776665 34443211 1122344555555
Q ss_pred HHHh-cCceEEEEecCCC
Q 001993 289 RESI-EGKKFFLVLDDVW 305 (985)
Q Consensus 289 ~~~l-~~k~~LlVlDdv~ 305 (985)
++.. ..+.-+||+|.+.
T Consensus 1498 ~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1498 DALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHHTCCSEEEESCGG
T ss_pred HHHHhcCCCCEEEEcChh
Confidence 5544 3678899999983
No 373
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=91.63 E-value=0.076 Score=51.99 Aligned_cols=21 Identities=43% Similarity=0.767 Sum_probs=19.8
Q ss_pred EEEEEccCCchHHHHHHHHhc
Q 001993 218 IISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 218 vv~I~G~gGiGKTtLa~~v~~ 238 (985)
+|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 374
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=91.62 E-value=0.11 Score=49.02 Aligned_cols=24 Identities=29% Similarity=0.519 Sum_probs=21.5
Q ss_pred CCEEEEEEccCCchHHHHHHHHhc
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
.-.+++|+|+.|.|||||++.++.
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346999999999999999999986
No 375
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.54 E-value=0.099 Score=54.71 Aligned_cols=24 Identities=25% Similarity=0.511 Sum_probs=21.8
Q ss_pred CCCEEEEEEccCCchHHHHHHHHh
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIF 237 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~ 237 (985)
....+|+|+|+.|+||||+|+.+.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 456799999999999999999987
No 376
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=91.54 E-value=0.09 Score=52.21 Aligned_cols=23 Identities=17% Similarity=0.483 Sum_probs=21.0
Q ss_pred CEEEEEEccCCchHHHHHHHHhc
Q 001993 216 PTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
-.+++|+|+.|+|||||++.+..
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35999999999999999999886
No 377
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=91.54 E-value=0.096 Score=55.64 Aligned_cols=40 Identities=18% Similarity=0.248 Sum_probs=27.9
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeC
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVS 255 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s 255 (985)
.+.+||+|+|-|||||||.+-.++.- ....=..+.-|.+.
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~a--LA~~GkkVllID~D 85 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAA--FSILGKRVLQIGCD 85 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEES
T ss_pred CCceEEEEECCCccCHHHHHHHHHHH--HHHCCCeEEEEecC
Confidence 46789999999999999999887652 22222245556655
No 378
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=91.33 E-value=0.4 Score=53.99 Aligned_cols=52 Identities=15% Similarity=0.196 Sum_probs=35.6
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHH
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILE 269 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 269 (985)
.-.++.|.|.+|+||||||..++...... .=..++|++... +...+...++.
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~-~g~~Vl~~s~E~--s~~~l~~r~~~ 253 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATK-TNENVAIFSLEM--SAQQLVMRMLC 253 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHH-SSCCEEEEESSS--CHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEEECCC--CHHHHHHHHHH
Confidence 34699999999999999999998743222 112577776543 45666666654
No 379
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=91.32 E-value=0.089 Score=53.12 Aligned_cols=24 Identities=33% Similarity=0.331 Sum_probs=21.0
Q ss_pred CCEEEEEEccCCchHHHHHHHHhc
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
....|.|.|++|+||||+|+.++.
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999986
No 380
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=91.25 E-value=0.11 Score=52.10 Aligned_cols=25 Identities=28% Similarity=0.349 Sum_probs=22.4
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcc
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFND 239 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~ 239 (985)
...+|+|+|.+|+|||||+..+...
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 5689999999999999999998873
No 381
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=91.24 E-value=0.084 Score=52.93 Aligned_cols=23 Identities=39% Similarity=0.531 Sum_probs=20.9
Q ss_pred CEEEEEEccCCchHHHHHHHHhc
Q 001993 216 PTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
..+++|+|+.|+|||||++.+..
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35899999999999999999886
No 382
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=91.20 E-value=0.1 Score=53.61 Aligned_cols=23 Identities=35% Similarity=0.603 Sum_probs=21.0
Q ss_pred CEEEEEEccCCchHHHHHHHHhc
Q 001993 216 PTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
..+|+|+|+.|+||||+++.++.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999985
No 383
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=91.12 E-value=0.1 Score=52.15 Aligned_cols=24 Identities=21% Similarity=0.466 Sum_probs=21.7
Q ss_pred CCEEEEEEccCCchHHHHHHHHhc
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
.-.+++|+|+.|+|||||++.+..
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 446999999999999999999876
No 384
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=91.11 E-value=0.14 Score=49.77 Aligned_cols=23 Identities=13% Similarity=0.251 Sum_probs=20.7
Q ss_pred CEEEEEEccCCchHHHHHHHHhc
Q 001993 216 PTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
...+.|+|++|+||||+|..+++
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHH
Confidence 35699999999999999999987
No 385
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=91.10 E-value=0.57 Score=50.05 Aligned_cols=106 Identities=18% Similarity=0.124 Sum_probs=54.9
Q ss_pred EEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCce
Q 001993 217 TIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKK 296 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 296 (985)
.+++|+|+.|.|||||++.+..- +. .-...+.+.-......... + ..+..-.. ........+...|..++
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~--~~-~~~g~i~i~~~~e~~~~~~-~---~~i~~~~g---gg~~~r~~la~aL~~~p 241 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEF--IP-KEERIISIEDTEEIVFKHH-K---NYTQLFFG---GNITSADCLKSCLRMRP 241 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGG--SC-TTSCEEEEESSCCCCCSSC-S---SEEEEECB---TTBCHHHHHHHHTTSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC--Cc-CCCcEEEECCeeccccccc-h---hEEEEEeC---CChhHHHHHHHHhhhCC
Confidence 48999999999999999999872 21 1234454442211110000 0 00000000 11122334556677788
Q ss_pred EEEEecCCCCCCcccHHHHHhhhcCCCCCcEEEEEcCchhh
Q 001993 297 FFLVLDDVWTEEPQNWEQLLGCLRCGSKESRILVTTRNEKV 337 (985)
Q Consensus 297 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v 337 (985)
=++++|++-. .+.++. ...+..++. -+|+||.....
T Consensus 242 ~ilildE~~~--~e~~~~-l~~~~~g~~--tvi~t~H~~~~ 277 (330)
T 2pt7_A 242 DRIILGELRS--SEAYDF-YNVLCSGHK--GTLTTLHAGSS 277 (330)
T ss_dssp SEEEECCCCS--THHHHH-HHHHHTTCC--CEEEEEECSSH
T ss_pred CEEEEcCCCh--HHHHHH-HHHHhcCCC--EEEEEEcccHH
Confidence 8999999954 233443 334433221 26667665543
No 386
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=91.05 E-value=0.25 Score=44.63 Aligned_cols=33 Identities=21% Similarity=0.218 Sum_probs=16.6
Q ss_pred CCcEeeccCcccccccchh-hhhccccceeecccc
Q 001993 650 NLQTLDVSLCHYLKRLPER-IGQLINLRHLMNSKE 683 (985)
Q Consensus 650 ~L~~L~l~~~~~l~~lP~~-i~~L~~L~~L~l~~n 683 (985)
+|++|+|++|. +..+|.+ +..+++|+.|+|++|
T Consensus 32 ~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 32 DTTELVLTGNN-LTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp TCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSS
T ss_pred CCCEEECCCCc-CCccChhhhhhccccCEEEecCC
Confidence 45555555554 4455433 244555555555544
No 387
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=91.02 E-value=0.085 Score=53.06 Aligned_cols=24 Identities=33% Similarity=0.426 Sum_probs=21.3
Q ss_pred CCEEEEEEccCCchHHHHHHHHhc
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
....|.|.|++|+||||+|+.++.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999986
No 388
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=91.00 E-value=0.1 Score=51.61 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=20.6
Q ss_pred EEEEEEccCCchHHHHHHHHhc
Q 001993 217 TIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
.+|+|.|+.|+||||+++.+..
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 389
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=91.00 E-value=0.22 Score=55.41 Aligned_cols=86 Identities=22% Similarity=0.204 Sum_probs=50.9
Q ss_pred CCEEEEEEccCCchHHHHH-HHHhcchhhhccCCc-eEEEEeCCCCC-HHHHHHHHHHHhcC-------CCCCCCCHHHH
Q 001993 215 RPTIISITGMGGIGKTTLA-KLIFNDNEVRNHFNE-KIWVCVSEPFD-DIRIAKAILESLKG-------SATNAVESETV 284 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~f~~-~~wv~~s~~~~-~~~~~~~i~~~l~~-------~~~~~~~~~~~ 284 (985)
+-+.++|.|..|+|||+|| ..+++.. .-+. ++++-+.+... +.++.+.+.+.=.. ...+.......
T Consensus 174 rGQR~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~ 249 (515)
T 2r9v_A 174 RGQRELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQY 249 (515)
T ss_dssp TTCBEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHH
T ss_pred cCCEEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHH
Confidence 3457899999999999996 4777732 2343 46777776553 44555555542111 11121111111
Q ss_pred -----HHHHHHHh--cCceEEEEecCC
Q 001993 285 -----LKQLRESI--EGKKFFLVLDDV 304 (985)
Q Consensus 285 -----~~~l~~~l--~~k~~LlVlDdv 304 (985)
...+.+++ +++.+|+++||+
T Consensus 250 ~a~~~a~tiAEyfrd~G~dVLli~Dsl 276 (515)
T 2r9v_A 250 IAPYAGCAMGEYFAYSGRDALVVYDDL 276 (515)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEeccH
Confidence 22344555 589999999997
No 390
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=91.00 E-value=0.44 Score=53.25 Aligned_cols=43 Identities=21% Similarity=0.457 Sum_probs=30.4
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCC
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFD 259 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~ 259 (985)
....+++|+|..|+|||||++.++. ..+. ....+++...+.+.
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAg--ll~~-~~G~V~l~g~D~~r 333 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLAR--QFEQ-QGKSVMLAAGDTFR 333 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHH--HHHH-TTCCEEEECCCTTC
T ss_pred cCCeEEEEECCCcccHHHHHHHHHH--Hhhh-cCCeEEEecCcccc
Confidence 3568999999999999999999987 3322 23455555444444
No 391
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=90.93 E-value=0.23 Score=55.26 Aligned_cols=86 Identities=21% Similarity=0.197 Sum_probs=50.8
Q ss_pred CCEEEEEEccCCchHHHHH-HHHhcchhhhccCCc-eEEEEeCCCCC-HHHHHHHHHHHhcCC-------CCCCCCHHHH
Q 001993 215 RPTIISITGMGGIGKTTLA-KLIFNDNEVRNHFNE-KIWVCVSEPFD-DIRIAKAILESLKGS-------ATNAVESETV 284 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~f~~-~~wv~~s~~~~-~~~~~~~i~~~l~~~-------~~~~~~~~~~ 284 (985)
+-+.++|.|..|+|||+|| ..+++. . .-+. ++++-+.+... +.++.+.+.+.=... ..+.......
T Consensus 161 rGQR~~Ifg~~g~GKT~Lal~~I~~~--~--~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~ 236 (502)
T 2qe7_A 161 RGQRELIIGDRQTGKTTIAIDTIINQ--K--GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLY 236 (502)
T ss_dssp TTCBCEEEECSSSCHHHHHHHHHHGG--G--SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHH
T ss_pred cCCEEEEECCCCCCchHHHHHHHHHh--h--cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHH
Confidence 3457899999999999996 467763 2 2343 46777776553 445555555421111 1111111111
Q ss_pred -----HHHHHHHh--cCceEEEEecCC
Q 001993 285 -----LKQLRESI--EGKKFFLVLDDV 304 (985)
Q Consensus 285 -----~~~l~~~l--~~k~~LlVlDdv 304 (985)
...+.+++ +++.+|+++||+
T Consensus 237 ~a~~~a~tiAEyfrd~G~dVLl~~Dsl 263 (502)
T 2qe7_A 237 LAPYAGCAMGEYFMYKGKHALVVYDDL 263 (502)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEEecH
Confidence 12344555 589999999997
No 392
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=90.92 E-value=0.13 Score=51.28 Aligned_cols=24 Identities=38% Similarity=0.438 Sum_probs=21.7
Q ss_pred CCEEEEEEccCCchHHHHHHHHhc
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
...+|.|+|+.|+||||+|+.+..
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999999987
No 393
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=90.87 E-value=0.11 Score=51.95 Aligned_cols=21 Identities=38% Similarity=0.533 Sum_probs=19.1
Q ss_pred EEEEEccCCchHHHHHHHHhc
Q 001993 218 IISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 218 vv~I~G~gGiGKTtLa~~v~~ 238 (985)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999876
No 394
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=90.77 E-value=0.21 Score=54.24 Aligned_cols=25 Identities=28% Similarity=0.407 Sum_probs=22.5
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhc
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
+...+|+|+|.+|+|||||+..+..
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999876
No 395
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=90.75 E-value=0.14 Score=51.34 Aligned_cols=23 Identities=35% Similarity=0.473 Sum_probs=20.7
Q ss_pred CEEEEEEccCCchHHHHHHHHhc
Q 001993 216 PTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
..+|+|+|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999864
No 396
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=90.72 E-value=0.095 Score=50.08 Aligned_cols=22 Identities=41% Similarity=0.539 Sum_probs=20.4
Q ss_pred EEEEEEccCCchHHHHHHHHhc
Q 001993 217 TIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
.+++|+|..|+|||||++.+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999886
No 397
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=90.67 E-value=0.12 Score=51.75 Aligned_cols=21 Identities=29% Similarity=0.460 Sum_probs=19.0
Q ss_pred EEEEEccCCchHHHHHHHHhc
Q 001993 218 IISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 218 vv~I~G~gGiGKTtLa~~v~~ 238 (985)
.|+|+|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999875
No 398
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=90.64 E-value=0.13 Score=54.22 Aligned_cols=24 Identities=38% Similarity=0.574 Sum_probs=22.1
Q ss_pred CCEEEEEEccCCchHHHHHHHHhc
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
...+++|+|+.|+||||+++.++.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 457999999999999999999987
No 399
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=90.62 E-value=1.1 Score=49.86 Aligned_cols=53 Identities=13% Similarity=0.081 Sum_probs=36.2
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHh
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESL 271 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 271 (985)
.-.++.|.|.+|+||||+|..++.+.-.+ =..++|++.. .+..++...++...
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlE--ms~~ql~~R~~~~~ 248 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLE--MGKKENIKRLIVTA 248 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSS--SCTTHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECC--CCHHHHHHHHHHHH
Confidence 34689999999999999999998753222 1246666544 34556666666544
No 400
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=90.61 E-value=0.43 Score=48.64 Aligned_cols=50 Identities=20% Similarity=0.260 Sum_probs=32.6
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHH
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAI 267 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 267 (985)
.-.++.|.|.+|+|||++|.+++.+. ....-..+++++.. .+...+...+
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~-~~~~~~~v~~~s~E--~~~~~~~~~~ 78 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKG-AEEYGEPGVFVTLE--ERARDLRREM 78 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHH-HHHHCCCEEEEESS--SCHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH-HHhcCCCceeeccc--CCHHHHHHHH
Confidence 34699999999999999999876532 22223346666554 3455555444
No 401
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=90.61 E-value=0.22 Score=54.28 Aligned_cols=112 Identities=13% Similarity=0.181 Sum_probs=56.9
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceE-EEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKI-WVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIE 293 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~-wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 293 (985)
...+++|+|+.|+||||+++.+.. .+.......+ ++.. .... ....-...+..... ..+...+...+...+.
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~--~~~~~~~g~I~~~e~--~~e~--~~~~~~~~v~Q~~~-g~~~~~~~~~l~~~L~ 207 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMID--YINQTKSYHIITIED--PIEY--VFKHKKSIVNQREV-GEDTKSFADALRAALR 207 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHH--HHHHHSCCEEEEEES--SCCS--CCCCSSSEEEEEEB-TTTBSCSHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh--hcCcCCCcEEEEecc--cHhh--hhccCceEEEeeec-CCCHHHHHHHHHHHhh
Confidence 346899999999999999999886 2222212223 3321 1110 00000000000000 0011122445667777
Q ss_pred CceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEEEEEcCchhhH
Q 001993 294 GKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRILVTTRNEKVA 338 (985)
Q Consensus 294 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~ 338 (985)
..+=+|++|.+- +.+......... ..|.-|+.|+-...+.
T Consensus 208 ~~pd~illdE~~--d~e~~~~~l~~~---~~g~~vi~t~H~~~~~ 247 (372)
T 2ewv_A 208 EDPDVIFVGEMR--DLETVETALRAA---ETGHLVFGTLHTNTAI 247 (372)
T ss_dssp SCCSEEEESCCC--SHHHHHHHHHHH---TTTCEEEECCCCCSHH
T ss_pred hCcCEEEECCCC--CHHHHHHHHHHH---hcCCEEEEEECcchHH
Confidence 778899999995 333333333322 3455688787765543
No 402
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=90.58 E-value=0.075 Score=53.04 Aligned_cols=21 Identities=38% Similarity=0.661 Sum_probs=19.7
Q ss_pred EEEEEccCCchHHHHHHHHhc
Q 001993 218 IISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 218 vv~I~G~gGiGKTtLa~~v~~ 238 (985)
+|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 789999999999999999986
No 403
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=90.57 E-value=0.1 Score=50.77 Aligned_cols=22 Identities=36% Similarity=0.404 Sum_probs=20.1
Q ss_pred EEEEEccCCchHHHHHHHHhcc
Q 001993 218 IISITGMGGIGKTTLAKLIFND 239 (985)
Q Consensus 218 vv~I~G~gGiGKTtLa~~v~~~ 239 (985)
+++|+|+.|+|||||++.++..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 6899999999999999998874
No 404
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=90.54 E-value=0.095 Score=52.48 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=20.2
Q ss_pred EEEEEEccCCchHHHHHHHHhc
Q 001993 217 TIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
..|.|.|++|+||||+|+.++.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999986
No 405
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=90.48 E-value=0.15 Score=54.26 Aligned_cols=25 Identities=40% Similarity=0.593 Sum_probs=22.3
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhc
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
....+|+|+|..|+|||||++.+..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3457999999999999999999886
No 406
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=90.44 E-value=0.8 Score=51.73 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=21.3
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhc
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
....+|+|+|.+|+||||++..++.
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999999986
No 407
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=90.36 E-value=0.26 Score=53.71 Aligned_cols=45 Identities=27% Similarity=0.381 Sum_probs=32.3
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhc
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
.++|....+.++...+.... ... ..|.|+|.+|.||+++|+.+..
T Consensus 130 ~~ig~s~~~~~~~~~~~~~a--------------~~~-~~vli~GesGtGKe~lAr~ih~ 174 (368)
T 3dzd_A 130 EFVGEHPKILEIKRLIPKIA--------------KSK-APVLITGESGTGKEIVARLIHR 174 (368)
T ss_dssp CCCCCSHHHHHHHHHHHHHH--------------TSC-SCEEEECCTTSSHHHHHHHHHH
T ss_pred cccccchHHHHHHhhhhhhh--------------ccc-hhheEEeCCCchHHHHHHHHHH
Confidence 57888777777666554322 112 2367999999999999999886
No 408
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=90.35 E-value=0.17 Score=50.14 Aligned_cols=22 Identities=36% Similarity=0.252 Sum_probs=20.3
Q ss_pred EEEEEccCCchHHHHHHHHhcc
Q 001993 218 IISITGMGGIGKTTLAKLIFND 239 (985)
Q Consensus 218 vv~I~G~gGiGKTtLa~~v~~~ 239 (985)
+++|+|+.|+|||||++.++.-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 8999999999999999998763
No 409
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=90.27 E-value=0.13 Score=52.70 Aligned_cols=24 Identities=38% Similarity=0.457 Sum_probs=21.2
Q ss_pred CCEEEEEEccCCchHHHHHHHHhc
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
.-.+++|+|+.|+|||||++.++.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 346999999999999999999884
No 410
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=90.12 E-value=0.14 Score=52.07 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=20.8
Q ss_pred EEEEEEccCCchHHHHHHHHhc
Q 001993 217 TIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
.+++|+|+.|+|||||.+.++.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 7999999999999999999986
No 411
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=90.09 E-value=0.34 Score=54.06 Aligned_cols=90 Identities=19% Similarity=0.233 Sum_probs=51.4
Q ss_pred CCEEEEEEccCCchHHHHH-HHHhcchhh----hccCC-ceEEEEeCCCCC-HHHHHHHHHHHhcC-------CCCCCCC
Q 001993 215 RPTIISITGMGGIGKTTLA-KLIFNDNEV----RNHFN-EKIWVCVSEPFD-DIRIAKAILESLKG-------SATNAVE 280 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa-~~v~~~~~~----~~~f~-~~~wv~~s~~~~-~~~~~~~i~~~l~~-------~~~~~~~ 280 (985)
+-+.++|.|..|+|||+|| ..+++.... ..+-+ .++++-+.+... +.++.+.+.+.=.. ...+...
T Consensus 161 rGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~ 240 (510)
T 2ck3_A 161 RGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAA 240 (510)
T ss_dssp TTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEEEEECTTSCH
T ss_pred cCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceEEEECCCCCH
Confidence 3457899999999999995 466663221 01234 367777877654 44555555442111 0111111
Q ss_pred HHHH-----HHHHHHHh--cCceEEEEecCC
Q 001993 281 SETV-----LKQLRESI--EGKKFFLVLDDV 304 (985)
Q Consensus 281 ~~~~-----~~~l~~~l--~~k~~LlVlDdv 304 (985)
.... ...+.+++ +++.+||++||+
T Consensus 241 ~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsl 271 (510)
T 2ck3_A 241 PLQYLAPYSGCSMGEYFRDNGKHALIIYDDL 271 (510)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcEEEEEcCH
Confidence 1111 22244555 589999999998
No 412
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=90.06 E-value=0.1 Score=52.92 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=16.4
Q ss_pred CEEEEEEccCCchHHHHHHHHh-c
Q 001993 216 PTIISITGMGGIGKTTLAKLIF-N 238 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~-~ 238 (985)
..+++|+|+.|+|||||++.+. .
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 3589999999999999999998 5
No 413
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=90.06 E-value=0.49 Score=61.87 Aligned_cols=84 Identities=20% Similarity=0.186 Sum_probs=57.2
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCC-----CCCCHHHHHHHHH
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSAT-----NAVESETVLKQLR 289 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 289 (985)
...++.|+|.+|+||||||.+++.... ..=..++|++....++... ++.++.+.. ...+.+++...++
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a--~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~~ 454 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 454 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH--hcCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHHH
Confidence 456999999999999999999987432 2223688888877776542 455543321 2345666666666
Q ss_pred HHh-cCceEEEEecCCC
Q 001993 290 ESI-EGKKFFLVLDDVW 305 (985)
Q Consensus 290 ~~l-~~k~~LlVlDdv~ 305 (985)
... ..+.-+||+|.+.
T Consensus 455 ~lv~~~~~~lIVIDSL~ 471 (2050)
T 3cmu_A 455 ALARSGAVDVIVVDSVA 471 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHHhcCCcEEEECCHH
Confidence 544 3566799999984
No 414
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=90.02 E-value=0.73 Score=51.72 Aligned_cols=49 Identities=16% Similarity=0.209 Sum_probs=35.7
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCH-HHHHHHH
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDD-IRIAKAI 267 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~-~~~~~~i 267 (985)
.-+.++|.|..|+|||+|+.++++. .+-+.++++-+.+.... .++++.+
T Consensus 226 kGqr~~I~g~~g~GKT~L~~~ia~~----~~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 226 KGGTAAIPGPAGSGKTVTQHQLAKW----SDAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp TTCEEEECSCCSHHHHHHHHHHHHH----SSCSEEEEEECCSSSSHHHHHHHHT
T ss_pred cCCeEEeecCCCCCHHHHHHHHHhc----cCCCEEEEEEecccHHHHHHHHHHH
Confidence 4467899999999999999998762 22356778888877654 3444443
No 415
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=90.00 E-value=0.42 Score=46.80 Aligned_cols=49 Identities=20% Similarity=0.238 Sum_probs=30.9
Q ss_pred EEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHH
Q 001993 218 IISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAIL 268 (985)
Q Consensus 218 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 268 (985)
.|+|-|..|+||||.++.+++ ..+..-..+++..-.......+..+.++
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~--~L~~~g~~v~~treP~~t~~~~~ir~~l 50 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQ--YLEKRGKKVILKREPGGTETGEKIRKIL 50 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEESSCSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH--HHHHCCCcEEEEECCCCCcHHHHHHHHh
Confidence 478899999999999999987 4444433444444333333344444444
No 416
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=89.99 E-value=0.11 Score=52.95 Aligned_cols=22 Identities=36% Similarity=0.564 Sum_probs=20.5
Q ss_pred EEEEEEccCCchHHHHHHHHhc
Q 001993 217 TIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
.+|+|+|+.|+||||+++.++.
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999986
No 417
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=89.98 E-value=0.24 Score=52.66 Aligned_cols=25 Identities=36% Similarity=0.502 Sum_probs=22.4
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhc
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
....+++|+|.+|+||||++..++.
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3468999999999999999999987
No 418
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=89.91 E-value=0.17 Score=59.33 Aligned_cols=41 Identities=17% Similarity=0.319 Sum_probs=34.9
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhc
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
+++|.+..++.+...+..+ ..+.|+|++|+||||||+.++.
T Consensus 42 ~i~G~~~~l~~l~~~i~~g-------------------~~vll~Gp~GtGKTtlar~ia~ 82 (604)
T 3k1j_A 42 QVIGQEHAVEVIKTAANQK-------------------RHVLLIGEPGTGKSMLGQAMAE 82 (604)
T ss_dssp HCCSCHHHHHHHHHHHHTT-------------------CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEECchhhHhhccccccCC-------------------CEEEEEeCCCCCHHHHHHHHhc
Confidence 6899998888887777522 3789999999999999999987
No 419
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=89.91 E-value=0.16 Score=49.45 Aligned_cols=26 Identities=35% Similarity=0.406 Sum_probs=22.2
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcc
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFND 239 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 239 (985)
.....|+|+|.+|+|||||+..+...
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34567899999999999999998874
No 420
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=89.87 E-value=0.15 Score=50.48 Aligned_cols=21 Identities=29% Similarity=0.539 Sum_probs=20.0
Q ss_pred EEEEEccCCchHHHHHHHHhc
Q 001993 218 IISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 218 vv~I~G~gGiGKTtLa~~v~~ 238 (985)
+|+|.|+.|+||||+|+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999986
No 421
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=89.86 E-value=0.16 Score=53.76 Aligned_cols=24 Identities=21% Similarity=0.421 Sum_probs=21.9
Q ss_pred CCEEEEEEccCCchHHHHHHHHhc
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
..++|.|+|+.|+||||||..++.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 346999999999999999999997
No 422
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=89.83 E-value=0.14 Score=51.40 Aligned_cols=22 Identities=36% Similarity=0.495 Sum_probs=20.6
Q ss_pred EEEEEEccCCchHHHHHHHHhc
Q 001993 217 TIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
.+++|+|+.|+|||||.+.++.
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999886
No 423
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=89.81 E-value=0.28 Score=49.40 Aligned_cols=24 Identities=29% Similarity=0.530 Sum_probs=22.0
Q ss_pred CCEEEEEEccCCchHHHHHHHHhc
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
...+|+|.|+.|+||||+++.+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 457899999999999999999987
No 424
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=89.75 E-value=0.16 Score=51.37 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=21.0
Q ss_pred CEEEEEEccCCchHHHHHHHHhc
Q 001993 216 PTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
-.+++|+|+.|+|||||.+.+..
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 35999999999999999999886
No 425
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=89.66 E-value=0.17 Score=53.94 Aligned_cols=22 Identities=32% Similarity=0.356 Sum_probs=20.7
Q ss_pred EEEEEEccCCchHHHHHHHHhc
Q 001993 217 TIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
.+|+|.|+.|+||||||..++.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5899999999999999999987
No 426
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=89.63 E-value=0.18 Score=54.42 Aligned_cols=25 Identities=36% Similarity=0.571 Sum_probs=22.6
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhc
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
....+++|+|+.|+||||+++.++.
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHh
Confidence 3467999999999999999999987
No 427
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=89.63 E-value=0.15 Score=56.53 Aligned_cols=57 Identities=23% Similarity=0.262 Sum_probs=35.4
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhc
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
.++|-+..++.|...+...- ....... ........+-+.++|++|+||||+|+.++.
T Consensus 16 ~IvGqe~ak~~l~~av~~~~--~r~~~~~-~~~~~~~~~~iLl~GppGtGKT~lar~lA~ 72 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRW--RRMQLQE-PLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHH--HHHHSCT-TTTTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHH--hhhcccc-ccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 58898888888876663210 0000000 000011345689999999999999999987
No 428
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=89.61 E-value=0.17 Score=48.48 Aligned_cols=24 Identities=29% Similarity=0.440 Sum_probs=21.8
Q ss_pred CCEEEEEEccCCchHHHHHHHHhc
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
...+++|+|..|+|||||+..+..
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHH
Confidence 357999999999999999999987
No 429
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=89.61 E-value=0.14 Score=51.00 Aligned_cols=21 Identities=33% Similarity=0.374 Sum_probs=19.3
Q ss_pred EEEEEccCCchHHHHHHHHhc
Q 001993 218 IISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 218 vv~I~G~gGiGKTtLa~~v~~ 238 (985)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 479999999999999999986
No 430
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=89.59 E-value=0.16 Score=51.06 Aligned_cols=21 Identities=38% Similarity=0.433 Sum_probs=19.5
Q ss_pred EEEEEccCCchHHHHHHHHhc
Q 001993 218 IISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 218 vv~I~G~gGiGKTtLa~~v~~ 238 (985)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999986
No 431
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=89.57 E-value=0.16 Score=51.00 Aligned_cols=23 Identities=17% Similarity=0.508 Sum_probs=21.0
Q ss_pred CEEEEEEccCCchHHHHHHHHhc
Q 001993 216 PTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
..+|+|.|++|+||||+|+.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999986
No 432
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=89.57 E-value=0.16 Score=51.42 Aligned_cols=24 Identities=25% Similarity=0.243 Sum_probs=21.3
Q ss_pred CCEEEEEEccCCchHHHHHHHHhc
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
....|.|.|++|+||||+|+.++.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999987
No 433
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=89.55 E-value=0.93 Score=50.30 Aligned_cols=86 Identities=20% Similarity=0.225 Sum_probs=50.7
Q ss_pred CCEEEEEEccCCchHHHHH-HHHhcchhhhccCC-ceEEEEeCCCCC-HHHHHHHHHHHhcCC-------CCCCCCHHH-
Q 001993 215 RPTIISITGMGGIGKTTLA-KLIFNDNEVRNHFN-EKIWVCVSEPFD-DIRIAKAILESLKGS-------ATNAVESET- 283 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~f~-~~~wv~~s~~~~-~~~~~~~i~~~l~~~-------~~~~~~~~~- 283 (985)
+-+.++|.|..|+|||+|| ..+.+. .+-+ .++++-+.+... +.++.+.+.+.=... ..+.....+
T Consensus 161 rGQR~~Ifg~~g~GKT~l~l~~I~n~----~~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~ 236 (513)
T 3oaa_A 161 RGQRELIIGDRQTGKTALAIDAIINQ----RDSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQY 236 (513)
T ss_dssp TTCBCEEEESSSSSHHHHHHHHHHTT----SSSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHH
T ss_pred cCCEEEeecCCCCCcchHHHHHHHhh----ccCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHHH
Confidence 3457899999999999996 566662 2233 357888887654 445555544431111 111111111
Q ss_pred ----HHHHHHHHh--cCceEEEEecCC
Q 001993 284 ----VLKQLRESI--EGKKFFLVLDDV 304 (985)
Q Consensus 284 ----~~~~l~~~l--~~k~~LlVlDdv 304 (985)
....+.+++ +++.+||++||+
T Consensus 237 ~a~~~a~tiAEyfrd~G~dVLli~Dsl 263 (513)
T 3oaa_A 237 LAPYAGCAMGEYFRDRGEDALIIYDDL 263 (513)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEETH
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEecCh
Confidence 112233444 589999999998
No 434
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=89.50 E-value=0.2 Score=51.68 Aligned_cols=25 Identities=32% Similarity=0.377 Sum_probs=22.5
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhc
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
....++.+.|.||+||||++..++.
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHH
Confidence 4568999999999999999999985
No 435
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=89.36 E-value=0.22 Score=52.04 Aligned_cols=25 Identities=32% Similarity=0.333 Sum_probs=22.3
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhc
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
....+|.|+|+.|+||||||..++.
T Consensus 8 ~~~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 8 SLPKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCcEEEEECCCccCHHHHHHHHHH
Confidence 3457999999999999999999986
No 436
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=89.36 E-value=0.16 Score=50.15 Aligned_cols=21 Identities=38% Similarity=0.449 Sum_probs=19.3
Q ss_pred EEEEEccCCchHHHHHHHHhc
Q 001993 218 IISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 218 vv~I~G~gGiGKTtLa~~v~~ 238 (985)
+|.|.|++|+||+|.|+.++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999986
No 437
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=89.35 E-value=0.18 Score=51.09 Aligned_cols=23 Identities=22% Similarity=0.521 Sum_probs=21.0
Q ss_pred CEEEEEEccCCchHHHHHHHHhc
Q 001993 216 PTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
-.+++|+|+.|+|||||++.++.
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35999999999999999999976
No 438
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=89.32 E-value=0.29 Score=53.86 Aligned_cols=86 Identities=12% Similarity=0.145 Sum_probs=51.1
Q ss_pred EEEEEEccCCchHHHHHHHHhcchhhhccCC----ceEEEEeCCCC-CHHHHHHHHHHHhcCC-------CCCCCCHHH-
Q 001993 217 TIISITGMGGIGKTTLAKLIFNDNEVRNHFN----EKIWVCVSEPF-DDIRIAKAILESLKGS-------ATNAVESET- 283 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~----~~~wv~~s~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~- 283 (985)
+.++|.|..|+|||+|+.++++.. ..+-+ .++++-+.+.. .+.++.+.+.+.=... ..+......
T Consensus 152 Qr~~Ifgg~G~GKt~L~~~Ia~~~--~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~ 229 (465)
T 3vr4_D 152 QKLPVFSGSGLPHKELAAQIARQA--TVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERI 229 (465)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHC--BCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHH
T ss_pred CEEEEeCCCCcChHHHHHHHHHHH--HhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHH
Confidence 457899999999999999998843 22223 46677676554 3455666554431010 111111111
Q ss_pred ----HHHHHHHHhc---CceEEEEecCC
Q 001993 284 ----VLKQLRESIE---GKKFFLVLDDV 304 (985)
Q Consensus 284 ----~~~~l~~~l~---~k~~LlVlDdv 304 (985)
..-.+.+++. ++.+||++||+
T Consensus 230 ~a~~~a~tiAEyfrd~~G~~VLl~~Dsl 257 (465)
T 3vr4_D 230 ATPRMALTAAEYLAYEKGMHVLVIMTDM 257 (465)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 1223445553 78999999998
No 439
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=89.30 E-value=0.2 Score=47.39 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=20.8
Q ss_pred EEEEEEccCCchHHHHHHHHhcc
Q 001993 217 TIISITGMGGIGKTTLAKLIFND 239 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~~ 239 (985)
..|+|+|.+|+|||||.+.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999874
No 440
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=89.29 E-value=0.17 Score=49.01 Aligned_cols=22 Identities=36% Similarity=0.518 Sum_probs=20.0
Q ss_pred EEEEEccCCchHHHHHHHHhcc
Q 001993 218 IISITGMGGIGKTTLAKLIFND 239 (985)
Q Consensus 218 vv~I~G~gGiGKTtLa~~v~~~ 239 (985)
-|+|+|.+|+|||||++.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999873
No 441
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=89.28 E-value=0.17 Score=52.52 Aligned_cols=22 Identities=32% Similarity=0.481 Sum_probs=20.4
Q ss_pred EEEEEEccCCchHHHHHHHHhc
Q 001993 217 TIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
.+++|+|+.|+|||||++.+..
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 5899999999999999999875
No 442
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=89.25 E-value=1.4 Score=60.46 Aligned_cols=81 Identities=17% Similarity=0.147 Sum_probs=48.9
Q ss_pred EEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh-cCce
Q 001993 218 IISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESI-EGKK 296 (985)
Q Consensus 218 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~ 296 (985)
-|.++|++|+|||+++..+... ..+ + ..+.++.+...+...++..+-..+.......... +..-. .||+
T Consensus 1306 pvLL~GptGtGKT~li~~~L~~--l~~-~-~~~~infS~~Tta~~l~~~~e~~~e~~~~~~~G~------~~~p~~~Gk~ 1375 (3245)
T 3vkg_A 1306 PLILCGPPGSGKTMTLTSTLRA--FPD-F-EVVSLNFSSATTPELLLKTFDHHCEYKRTPSGET------VLRPTQLGKW 1375 (3245)
T ss_dssp CCEEESSTTSSHHHHHHHHGGG--CTT-E-EEEEECCCTTCCHHHHHHHHHHHEEEEECTTSCE------EEEESSTTCE
T ss_pred cEEEECCCCCCHHHHHHHHHHh--CCC-C-ceEEEEeeCCCCHHHHHHHHhhcceEEeccCCCc------ccCCCcCCce
Confidence 4789999999999988777652 211 2 2467788888888777776654432111000000 00001 2788
Q ss_pred EEEEecCCCCCC
Q 001993 297 FFLVLDDVWTEE 308 (985)
Q Consensus 297 ~LlVlDdv~~~~ 308 (985)
.++++||+.-..
T Consensus 1376 ~VlFiDDiNmp~ 1387 (3245)
T 3vkg_A 1376 LVVFCDEINLPS 1387 (3245)
T ss_dssp EEEEETTTTCCC
T ss_pred EEEEecccCCCC
Confidence 999999995433
No 443
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=89.23 E-value=0.55 Score=60.62 Aligned_cols=81 Identities=21% Similarity=0.229 Sum_probs=0.0
Q ss_pred EEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCC-----CCCCCHHHHHHHHHHH
Q 001993 217 TIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSA-----TNAVESETVLKQLRES 291 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~~~ 291 (985)
+++.|+|.+|+||||||.+++. .....=..++|++....++... ++.++.+. ....+.+++...+...
T Consensus 384 ~lilI~G~pGsGKTtLaLq~a~--~~~~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~i~~~~~~e~~l~~l~~l 456 (1706)
T 3cmw_A 384 RIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDAL 456 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHH--HHHHhCCCeEEEEccCchHHHH-----HHHcCCCHHHeEEcCCCCHHHHHHHHHHH
Q ss_pred h-cCceEEEEecCC
Q 001993 292 I-EGKKFFLVLDDV 304 (985)
Q Consensus 292 l-~~k~~LlVlDdv 304 (985)
. ..+.-+||+|.+
T Consensus 457 v~~~~~~lVVIDSL 470 (1706)
T 3cmw_A 457 ARSGAVDVIVVDSV 470 (1706)
T ss_dssp HHHTCCSEEEESCS
T ss_pred HHhcCCCEEEECCH
No 444
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=89.14 E-value=0.19 Score=55.83 Aligned_cols=25 Identities=24% Similarity=0.477 Sum_probs=22.6
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhc
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
....+|.|+|++|+||||+|+.++.
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999999886
No 445
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=89.09 E-value=0.18 Score=49.16 Aligned_cols=111 Identities=10% Similarity=0.045 Sum_probs=55.3
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCC--CCCCCHHHHHHHHHHHh
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSA--TNAVESETVLKQLRESI 292 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~--~~~~~~~~~~~~l~~~l 292 (985)
.-.+..++|..|.||||.+..+++.... ..+...+ +...- +.+.-...+.+.++... ....+.+ .+.+.+
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~~-~g~kV~v-~k~~~--d~r~~~~~i~s~~g~~~~a~~~~~~~----~i~~~~ 78 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAKI-AKQKIQV-FKPEI--DNRYSKEDVVSHMGEKEQAVAIKNSR----EILKYF 78 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH-TTCCEEE-EEEC---------CEEECTTSCEEECEEESSST----HHHHHC
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHH-CCCEEEE-EEecc--CccchHHHHHhhcCCceeeEeeCCHH----HHHHHH
Confidence 3479999999999999999888774322 2233333 32111 11111112222222110 0001111 223333
Q ss_pred cCceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEEEEEcCchh
Q 001993 293 EGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRILVTTRNEK 336 (985)
Q Consensus 293 ~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~ 336 (985)
.+.-=+|++|.+.-.+.+..+.+....+ .|..||+|.++.+
T Consensus 79 ~~~~dvViIDEaqfl~~~~v~~l~~l~~---~~~~Vi~~Gl~~d 119 (191)
T 1xx6_A 79 EEDTEVIAIDEVQFFDDEIVEIVNKIAE---SGRRVICAGLDMD 119 (191)
T ss_dssp CTTCSEEEECSGGGSCTHHHHHHHHHHH---TTCEEEEEECSBC
T ss_pred hccCCEEEEECCCCCCHHHHHHHHHHHh---CCCEEEEEecccc
Confidence 3333499999985543344444443333 2668999988654
No 446
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=89.09 E-value=0.19 Score=51.79 Aligned_cols=23 Identities=39% Similarity=0.510 Sum_probs=21.0
Q ss_pred CEEEEEEccCCchHHHHHHHHhc
Q 001993 216 PTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
-.+++|+|+.|+|||||.+.++.
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35999999999999999999986
No 447
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=89.06 E-value=0.1 Score=54.81 Aligned_cols=24 Identities=33% Similarity=0.522 Sum_probs=18.6
Q ss_pred CCEEEEEEccCCchHHHHHHHHhc
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
...+|+|.|..|+||||+|+.+..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999886
No 448
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=89.02 E-value=0.2 Score=53.04 Aligned_cols=22 Identities=36% Similarity=0.468 Sum_probs=20.4
Q ss_pred EEEEEEccCCchHHHHHHHHhc
Q 001993 217 TIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999886
No 449
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=88.98 E-value=0.19 Score=51.17 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=20.6
Q ss_pred EEEEEEccCCchHHHHHHHHhc
Q 001993 217 TIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
.+++|+|+.|+|||||.+.++.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999986
No 450
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=88.92 E-value=0.2 Score=50.64 Aligned_cols=25 Identities=32% Similarity=0.352 Sum_probs=22.4
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhc
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
....+|+|.|+.|+||||+++.+..
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 4557999999999999999999886
No 451
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=88.91 E-value=0.2 Score=51.56 Aligned_cols=23 Identities=22% Similarity=0.405 Sum_probs=21.0
Q ss_pred CEEEEEEccCCchHHHHHHHHhc
Q 001993 216 PTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
-.+++|+|+.|+|||||++.++.
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEEcCCCCcHHHHHHHHHc
Confidence 35999999999999999999886
No 452
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=88.91 E-value=0.19 Score=48.99 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=21.3
Q ss_pred CEEEEEEccCCchHHHHHHHHhcc
Q 001993 216 PTIISITGMGGIGKTTLAKLIFND 239 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~ 239 (985)
.-.|+|+|.+|+|||||++.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999998864
No 453
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=88.90 E-value=0.23 Score=50.64 Aligned_cols=23 Identities=35% Similarity=0.517 Sum_probs=21.0
Q ss_pred CEEEEEEccCCchHHHHHHHHhc
Q 001993 216 PTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
-.+++|+|+.|+|||||.+.++.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46999999999999999999875
No 454
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=88.90 E-value=0.2 Score=52.91 Aligned_cols=22 Identities=32% Similarity=0.369 Sum_probs=20.7
Q ss_pred EEEEEEccCCchHHHHHHHHhc
Q 001993 217 TIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
.+|.|+|+.|+||||||+.++.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999987
No 455
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=88.89 E-value=0.36 Score=47.45 Aligned_cols=111 Identities=13% Similarity=0.018 Sum_probs=53.5
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCC--CCCCHHHHHHHHHHHh
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSAT--NAVESETVLKQLRESI 292 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~l~~~l 292 (985)
.-.+..++|..|.||||.|...+.....+ .. .++.+...- +.+.-...+.+.++.... ...+.+ .+.+..
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~~~-g~-kVli~k~~~--d~R~ge~~i~s~~g~~~~a~~~~~~~----~~~~~~ 98 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQFA-KQ-HAIVFKPCI--DNRYSEEDVVSHNGLKVKAVPVSASK----DIFKHI 98 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHHHT-TC-CEEEEECC-------------------CCEEECSSGG----GGGGGC
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHC-CC-EEEEEEecc--CCcchHHHHHhhcCCeeEEeecCCHH----HHHHHH
Confidence 34788999999999999998887743222 22 333333211 111122234444432211 011111 122222
Q ss_pred cCceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEEEEEcCchh
Q 001993 293 EGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRILVTTRNEK 336 (985)
Q Consensus 293 ~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~ 336 (985)
.++-=+|++|.+.-.+.+.++.+....+ .|-.||+|-++.+
T Consensus 99 ~~~~dvViIDEaQF~~~~~V~~l~~l~~---~~~~Vi~~Gl~~D 139 (214)
T 2j9r_A 99 TEEMDVIAIDEVQFFDGDIVEVVQVLAN---RGYRVIVAGLDQD 139 (214)
T ss_dssp CSSCCEEEECCGGGSCTTHHHHHHHHHH---TTCEEEEEECSBC
T ss_pred hcCCCEEEEECcccCCHHHHHHHHHHhh---CCCEEEEEecccc
Confidence 3333499999986544445544433222 2668999999755
No 456
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=88.89 E-value=0.16 Score=50.47 Aligned_cols=22 Identities=45% Similarity=0.677 Sum_probs=20.4
Q ss_pred EEEEEEccCCchHHHHHHHHhc
Q 001993 217 TIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
.+++|+|+.|+|||||.+.++.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999876
No 457
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=88.88 E-value=0.19 Score=51.73 Aligned_cols=22 Identities=36% Similarity=0.531 Sum_probs=20.6
Q ss_pred EEEEEEccCCchHHHHHHHHhc
Q 001993 217 TIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
.+++|+|+.|+|||||.+.++.
T Consensus 34 e~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5999999999999999999986
No 458
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=88.85 E-value=0.19 Score=51.97 Aligned_cols=23 Identities=35% Similarity=0.625 Sum_probs=21.1
Q ss_pred CEEEEEEccCCchHHHHHHHHhc
Q 001993 216 PTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
-.+++|+|+.|.|||||++.+..
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 35999999999999999999986
No 459
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=88.76 E-value=0.47 Score=47.06 Aligned_cols=105 Identities=12% Similarity=0.186 Sum_probs=56.6
Q ss_pred EEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCC----------CCCCCHHHHHH
Q 001993 217 TIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSA----------TNAVESETVLK 286 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~----------~~~~~~~~~~~ 286 (985)
-.|.+.|.||+||||+|..++... ....+ .+..+.+..+-..... ..+..+.... ....+.+.+
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l-~~~G~-~V~v~d~D~q~~~~~~--al~~gl~~~~~~~~~~~~~~~~e~~l~~~-- 80 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQ-LRQGV-RVMAGVVETHGRAETE--ALLNGLPQQPLLRTEYRGMTLEEMDLDAL-- 80 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHH-HHTTC-CEEEEECCCTTCHHHH--HHHTTSCBCCCEEEEETTEEEEECCHHHH--
T ss_pred EEEEEECCCCCcHHHHHHHHHHHH-HHCCC-CEEEEEeCCCCChhHH--HHhcCccccCcceeecCCcccccccHHHH--
Confidence 458899999999999998888732 22223 3445555443332211 1222222111 011233322
Q ss_pred HHHHHhcCceEEEEecCCCCC------CcccHHHHHhhhcCCCCCcEEEEEcCch
Q 001993 287 QLRESIEGKKFFLVLDDVWTE------EPQNWEQLLGCLRCGSKESRILVTTRNE 335 (985)
Q Consensus 287 ~l~~~l~~k~~LlVlDdv~~~------~~~~~~~l~~~l~~~~~gs~iivTtR~~ 335 (985)
+..+.=++|+|++-.. ....|..+...++ .|-.|+.|+.-.
T Consensus 81 -----L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~---sgidVitT~Nlq 127 (228)
T 2r8r_A 81 -----LKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLA---AGIDVYTTVNVQ 127 (228)
T ss_dssp -----HHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHH---TTCEEEEEEEGG
T ss_pred -----HhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHc---CCCCEEEEcccc
Confidence 2235669999987432 1235777766554 344688777644
No 460
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=88.76 E-value=0.6 Score=46.28 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=21.2
Q ss_pred CEEEEEEccCCchHHHHHHHHhc
Q 001993 216 PTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
..+|.|.|+.|+||||+++.+..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 461
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=88.66 E-value=0.2 Score=50.47 Aligned_cols=22 Identities=32% Similarity=0.671 Sum_probs=20.7
Q ss_pred EEEEEEccCCchHHHHHHHHhc
Q 001993 217 TIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
.+++|+|+.|.|||||.+.++.
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~G 56 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMG 56 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999986
No 462
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=88.64 E-value=0.24 Score=51.82 Aligned_cols=22 Identities=23% Similarity=0.492 Sum_probs=20.6
Q ss_pred EEEEEEccCCchHHHHHHHHhc
Q 001993 217 TIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
.+|+|+|+.|+||||||..++.
T Consensus 4 ~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCcCCHHHHHHHHHH
Confidence 5899999999999999999986
No 463
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=88.64 E-value=0.21 Score=51.21 Aligned_cols=22 Identities=32% Similarity=0.602 Sum_probs=20.7
Q ss_pred EEEEEEccCCchHHHHHHHHhc
Q 001993 217 TIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
.+++|+|+.|+|||||++.++.
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999987
No 464
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=88.60 E-value=0.2 Score=51.08 Aligned_cols=22 Identities=50% Similarity=0.740 Sum_probs=20.6
Q ss_pred EEEEEEccCCchHHHHHHHHhc
Q 001993 217 TIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
.+++|+|+.|+|||||++.++.
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999876
No 465
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=88.59 E-value=0.22 Score=51.07 Aligned_cols=22 Identities=36% Similarity=0.567 Sum_probs=20.6
Q ss_pred EEEEEEccCCchHHHHHHHHhc
Q 001993 217 TIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
.+++|+|+.|+|||||.+.++.
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 5999999999999999999976
No 466
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=88.48 E-value=0.58 Score=42.24 Aligned_cols=50 Identities=22% Similarity=0.266 Sum_probs=39.1
Q ss_pred eecCC--CCC--CCCcccccCCCCCeEecCCCCCccccchh-hcCCCCCcEeeccCcc
Q 001993 608 SIDGL--PVG--QIPKGIKKLIHLRYLALGENPWIKELPEA-LCELCNLQTLDVSLCH 660 (985)
Q Consensus 608 ~L~l~--~~~--~lp~~i~~l~~Lr~L~L~~~~~i~~lP~~-i~~L~~L~~L~l~~~~ 660 (985)
+++.+ .++ .+|..+. .+|++|+|++|. |..+|.. +..+.+|++|+|.+|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCc-CCccChhhhhhccccCEEEecCCC
Confidence 34444 455 7776543 469999999999 9999875 6789999999999987
No 467
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=88.47 E-value=0.85 Score=51.39 Aligned_cols=48 Identities=17% Similarity=0.183 Sum_probs=34.1
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC-CHHHHHHH
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF-DDIRIAKA 266 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~ 266 (985)
+-+.++|.|..|+|||+|+.++++. .+-+.++++-+.+.. .+.++++.
T Consensus 231 rGqr~~Ifgg~g~GKT~L~~~ia~~----~~~~v~V~~~iGER~~Ev~e~~~~ 279 (600)
T 3vr4_A 231 KGGAAAVPGPFGAGKTVVQHQIAKW----SDVDLVVYVGCGERGNEMTDVVNE 279 (600)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHH----SSCSEEEEEEEEECHHHHHHHHHH
T ss_pred CCCEEeeecCCCccHHHHHHHHHhc----cCCCEEEEEEecccHHHHHHHHHH
Confidence 4468899999999999999999873 123567788777653 33344443
No 468
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=88.37 E-value=0.24 Score=51.29 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=20.8
Q ss_pred EEEEEEccCCchHHHHHHHHhc
Q 001993 217 TIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
.+++|+|+.|+|||||++.++.
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999987
No 469
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=88.36 E-value=0.22 Score=50.90 Aligned_cols=22 Identities=32% Similarity=0.520 Sum_probs=20.6
Q ss_pred EEEEEEccCCchHHHHHHHHhc
Q 001993 217 TIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
.+++|+|+.|+|||||.+.++.
T Consensus 27 e~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 5899999999999999999987
No 470
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=88.32 E-value=0.23 Score=51.07 Aligned_cols=22 Identities=41% Similarity=0.729 Sum_probs=20.7
Q ss_pred EEEEEEccCCchHHHHHHHHhc
Q 001993 217 TIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
.+++|+|+.|+|||||++.++.
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5999999999999999999986
No 471
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=88.27 E-value=0.24 Score=47.96 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=20.9
Q ss_pred CEEEEEEccCCchHHHHHHHHhc
Q 001993 216 PTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
-+.|.|+|+.|+||||||.+++.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 36789999999999999999987
No 472
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=88.27 E-value=0.27 Score=47.89 Aligned_cols=26 Identities=19% Similarity=0.391 Sum_probs=22.7
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcc
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFND 239 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 239 (985)
.....|+|+|.+|+|||||...+.+.
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45677899999999999999999875
No 473
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=88.20 E-value=0.22 Score=48.93 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=21.1
Q ss_pred CEEEEEEccCCchHHHHHHHHhcc
Q 001993 216 PTIISITGMGGIGKTTLAKLIFND 239 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~ 239 (985)
.-.|+|+|.+|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 356899999999999999999864
No 474
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=88.17 E-value=0.24 Score=51.31 Aligned_cols=23 Identities=35% Similarity=0.579 Sum_probs=21.0
Q ss_pred CEEEEEEccCCchHHHHHHHHhc
Q 001993 216 PTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
-.+++|+|+.|+|||||++.++.
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999876
No 475
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=88.12 E-value=0.25 Score=46.24 Aligned_cols=23 Identities=22% Similarity=0.431 Sum_probs=20.4
Q ss_pred EEEEEEccCCchHHHHHHHHhcc
Q 001993 217 TIISITGMGGIGKTTLAKLIFND 239 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~~ 239 (985)
.-|+|+|.+|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999998864
No 476
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=88.10 E-value=0.25 Score=50.06 Aligned_cols=25 Identities=36% Similarity=0.510 Sum_probs=22.0
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhc
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
....+|+|+|+.|+||||+++.+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999999886
No 477
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=88.09 E-value=0.23 Score=50.90 Aligned_cols=22 Identities=36% Similarity=0.720 Sum_probs=20.6
Q ss_pred EEEEEEccCCchHHHHHHHHhc
Q 001993 217 TIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
.+++|+|+.|+|||||.+.++.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999986
No 478
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=88.02 E-value=0.24 Score=54.81 Aligned_cols=90 Identities=12% Similarity=0.133 Sum_probs=52.1
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccC--CceEEEEeCCCC-CHHHHHHHHHHHhcCC-------CCCCCCHHH-
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHF--NEKIWVCVSEPF-DDIRIAKAILESLKGS-------ATNAVESET- 283 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~~s~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~- 283 (985)
.-+.++|.|.+|+|||+|+.+++++......- +.++++-+.+.. .+.++.+.+.+.=... ..+......
T Consensus 151 rGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~ 230 (469)
T 2c61_A 151 RGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERI 230 (469)
T ss_dssp TTCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHH
Confidence 33567889999999999999998743321111 246667666554 3456666665431111 111111111
Q ss_pred ----HHHHHHHHh---cCceEEEEecCC
Q 001993 284 ----VLKQLRESI---EGKKFFLVLDDV 304 (985)
Q Consensus 284 ----~~~~l~~~l---~~k~~LlVlDdv 304 (985)
..-.+.+++ +++.+||++||+
T Consensus 231 ~~~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 231 VTPRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp HHHHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 122244554 479999999996
No 479
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=88.02 E-value=0.25 Score=51.07 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=20.9
Q ss_pred CEEEEEEccCCchHHHHHHHHhc
Q 001993 216 PTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
-.+++|+|+.|+|||||.+.++.
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 35999999999999999999876
No 480
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=88.01 E-value=0.29 Score=50.43 Aligned_cols=110 Identities=14% Similarity=0.161 Sum_probs=57.2
Q ss_pred CEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCC-CCCHHHHHHHHHH--HhcCCCCCCCCHHHHHHHHHHHh
Q 001993 216 PTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSE-PFDDIRIAKAILE--SLKGSATNAVESETVLKQLRESI 292 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~--~l~~~~~~~~~~~~~~~~l~~~l 292 (985)
-.+++|+|+.|+|||||++.+.. .....+...+++.-.. .+-.... ..++. .++. +. ..+...+.+.|
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g--~~~~~~~G~I~~~g~~i~~~~~~~-~~~v~q~~~gl---~~---~~l~~~la~aL 95 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMID--YINQTKSYHIITIEDPIEYVFKHK-KSIVNQREVGE---DT---KSFADALRAAL 95 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHH--HHHHHCCCEEEEEESSCCSCCCCS-SSEEEEEEBTT---TB---SCHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHH--hCCCCCCCEEEEcCCcceeecCCc-ceeeeHHHhCC---CH---HHHHHHHHHHH
Confidence 36999999999999999999886 2222223333332110 0000000 00000 0000 11 12344566666
Q ss_pred cCceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEEEEEcCchhhHH
Q 001993 293 EGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRILVTTRNEKVAI 339 (985)
Q Consensus 293 ~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~ 339 (985)
...+=++++|+.- +.+....+.... ..|.-|++||-......
T Consensus 96 ~~~p~illlDEp~--D~~~~~~~l~~~---~~g~~vl~t~H~~~~~~ 137 (261)
T 2eyu_A 96 REDPDVIFVGEMR--DLETVETALRAA---ETGHLVFGTLHTNTAID 137 (261)
T ss_dssp HHCCSEEEESCCC--SHHHHHHHHHHH---HTTCEEEEEECCSSHHH
T ss_pred hhCCCEEEeCCCC--CHHHHHHHHHHH---ccCCEEEEEeCcchHHH
Confidence 6677789999985 333333333332 23556888888766443
No 481
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=87.97 E-value=0.25 Score=51.95 Aligned_cols=24 Identities=17% Similarity=0.378 Sum_probs=21.4
Q ss_pred CCEEEEEEccCCchHHHHHHHHhc
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
.-.+++|+|+.|.|||||++.+..
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhh
Confidence 346899999999999999999886
No 482
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=87.97 E-value=0.23 Score=51.64 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=20.6
Q ss_pred EEEEEEccCCchHHHHHHHHhc
Q 001993 217 TIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
.+++|+|+.|+|||||.+.++.
T Consensus 48 e~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 5899999999999999999986
No 483
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=87.96 E-value=0.6 Score=51.41 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=23.3
Q ss_pred CCCCEEEEEEccCCchHHHHHHHHhc
Q 001993 213 TQRPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 213 ~~~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
....++..|.|.+|.||||++++.++
T Consensus 158 ~~~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 158 VSSAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp CCCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred cccccEEEEEcCCCCCHHHHHHHHhc
Confidence 35789999999999999999998886
No 484
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=87.92 E-value=0.28 Score=53.99 Aligned_cols=89 Identities=12% Similarity=0.163 Sum_probs=51.5
Q ss_pred CEEEEEEccCCchHHHHHHHHhcchhhh--------ccCC-ceEEEEeCCCC-CHHHHHHHHHHH--hcC-----CCCCC
Q 001993 216 PTIISITGMGGIGKTTLAKLIFNDNEVR--------NHFN-EKIWVCVSEPF-DDIRIAKAILES--LKG-----SATNA 278 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~--------~~f~-~~~wv~~s~~~-~~~~~~~~i~~~--l~~-----~~~~~ 278 (985)
-+.++|.|..|+|||+|+.++++..... ++=+ .++++-+.+.. .+.++.+.+.+. +.. ...+.
T Consensus 147 GQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~ 226 (464)
T 3gqb_B 147 GQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADD 226 (464)
T ss_dssp TCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTS
T ss_pred CCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCC
Confidence 3467899999999999999998743321 1112 46667676554 344555554432 100 11122
Q ss_pred CCHHHH-----HHHHHHHhc---CceEEEEecCC
Q 001993 279 VESETV-----LKQLRESIE---GKKFFLVLDDV 304 (985)
Q Consensus 279 ~~~~~~-----~~~l~~~l~---~k~~LlVlDdv 304 (985)
...... .-.+.+++. ++.+||++||+
T Consensus 227 p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~Ddl 260 (464)
T 3gqb_B 227 PTIERILTPRMALTVAEYLAFEHDYHVLVILTDM 260 (464)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 222221 223445553 78999999998
No 485
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=87.89 E-value=0.61 Score=46.48 Aligned_cols=26 Identities=31% Similarity=0.482 Sum_probs=23.1
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcc
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFND 239 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 239 (985)
....+|.|.|+.|+||||+++.+...
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~ 44 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEY 44 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45679999999999999999999873
No 486
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=87.84 E-value=0.22 Score=52.05 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=21.0
Q ss_pred CEEEEEEccCCchHHHHHHHHhc
Q 001993 216 PTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
-.++.|+|.+|+|||||+..++.
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 35999999999999999999886
No 487
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=87.82 E-value=0.33 Score=46.32 Aligned_cols=26 Identities=38% Similarity=0.571 Sum_probs=22.5
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcc
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFND 239 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 239 (985)
.....|+|+|.+|+|||||+..+.+.
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45567899999999999999999764
No 488
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=87.82 E-value=0.4 Score=52.07 Aligned_cols=24 Identities=29% Similarity=0.303 Sum_probs=21.7
Q ss_pred CCEEEEEEccCCchHHHHHHHHhc
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
...+++|+|++|.|||||++.++.
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 446999999999999999999986
No 489
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=87.74 E-value=0.51 Score=54.27 Aligned_cols=114 Identities=18% Similarity=0.159 Sum_probs=58.7
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCC---------------CCCCC
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGS---------------ATNAV 279 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~---------------~~~~~ 279 (985)
.-.+++|.|.+|+|||||++.++......+ ..++++...+ ....+...+ ..++.. .....
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G--~~vi~~~~ee--~~~~l~~~~-~~~g~~~~~~~~~g~~~~~~~~p~~L 354 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENACANK--ERAILFAYEE--SRAQLLRNA-YSWGMDFEEMERQNLLKIVCAYPESA 354 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHHHTTT--CCEEEEESSS--CHHHHHHHH-HTTSCCHHHHHHTTSEEECCCCGGGS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhCC--CCEEEEEEeC--CHHHHHHHH-HHcCCCHHHHHhCCCEEEEEeccccC
Confidence 346999999999999999999986322111 1245554333 233333222 111110 01112
Q ss_pred CHHHHHHH-HHHHhcCceEEEEecCCCCCCcc-----cHHH---HHhhhcCCCCCcEEEEEcCch
Q 001993 280 ESETVLKQ-LRESIEGKKFFLVLDDVWTEEPQ-----NWEQ---LLGCLRCGSKESRILVTTRNE 335 (985)
Q Consensus 280 ~~~~~~~~-l~~~l~~k~~LlVlDdv~~~~~~-----~~~~---l~~~l~~~~~gs~iivTtR~~ 335 (985)
..++.+.. +...+..++-+||+|-....+.. .... +...+. ..|.-||+||.+.
T Consensus 355 S~g~~q~~~~a~~l~~~p~llilDp~~~Ld~~~~~~~~~~~i~~ll~~l~--~~g~tvilvsh~~ 417 (525)
T 1tf7_A 355 GLEDHLQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAK--QEEITGLFTNTSD 417 (525)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHH--HTTCEEEEEEECS
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEcChHHHHhhCChHHHHHHHHHHHHHHH--hCCCEEEEEECcc
Confidence 34444433 33445677889999954211111 2222 233332 2366688887654
No 490
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=87.71 E-value=0.51 Score=49.99 Aligned_cols=43 Identities=16% Similarity=0.221 Sum_probs=30.1
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
...++|+|+|-||+||||+|..++.. ....=..++-|......
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~--La~~G~~VlliD~D~~~ 81 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAA--FSILGKRVLQIGCDPKH 81 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEESSSC
T ss_pred CCceEEEEECCCCccHHHHHHHHHHH--HHHCCCeEEEEeCCCCC
Confidence 46689999999999999999988873 32222246667665443
No 491
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=87.69 E-value=0.34 Score=46.82 Aligned_cols=25 Identities=20% Similarity=0.397 Sum_probs=21.9
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcc
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFND 239 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~ 239 (985)
....|+|+|.+|+|||||...+...
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3467999999999999999999874
No 492
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=87.47 E-value=0.28 Score=49.95 Aligned_cols=23 Identities=39% Similarity=0.608 Sum_probs=21.0
Q ss_pred CEEEEEEccCCchHHHHHHHHhc
Q 001993 216 PTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
...|+|.|..|+||||+++.++.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 36899999999999999999987
No 493
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=87.44 E-value=0.27 Score=46.79 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=20.7
Q ss_pred EEEEEEccCCchHHHHHHHHhcc
Q 001993 217 TIISITGMGGIGKTTLAKLIFND 239 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~~ 239 (985)
--|+|+|.+|+|||||+..+...
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 46899999999999999999875
No 494
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=87.40 E-value=0.33 Score=47.13 Aligned_cols=26 Identities=23% Similarity=0.459 Sum_probs=22.4
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcc
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFND 239 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 239 (985)
.....|+|+|.+|+|||||+..+...
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcC
Confidence 34567899999999999999999875
No 495
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=87.23 E-value=0.3 Score=51.47 Aligned_cols=23 Identities=30% Similarity=0.683 Sum_probs=20.9
Q ss_pred CEEEEEEccCCchHHHHHHHHhc
Q 001993 216 PTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
-.+++|+|+.|.|||||++.+..
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCEEEEECCCCchHHHHHHHHHc
Confidence 45999999999999999999875
No 496
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=87.15 E-value=0.67 Score=46.71 Aligned_cols=37 Identities=22% Similarity=0.376 Sum_probs=26.5
Q ss_pred CEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEE
Q 001993 216 PTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVC 253 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~ 253 (985)
..+|.|.|+.|+||||+++.+...-. ...+..++...
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~-~~~~~~~~~~r 63 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQ-QNGIDHITRTR 63 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHH-HTTCCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-hcCCCeeeeec
Confidence 46899999999999999999987322 23344344443
No 497
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=87.07 E-value=0.34 Score=53.96 Aligned_cols=86 Identities=19% Similarity=0.213 Sum_probs=49.3
Q ss_pred CCEEEEEEccCCchHHHHH-HHHhcchhhhccCC-ceEEEEeCCCCC-HHHHHHHHHHHhcCC-------CCCCCC----
Q 001993 215 RPTIISITGMGGIGKTTLA-KLIFNDNEVRNHFN-EKIWVCVSEPFD-DIRIAKAILESLKGS-------ATNAVE---- 280 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~f~-~~~wv~~s~~~~-~~~~~~~i~~~l~~~-------~~~~~~---- 280 (985)
+-+.++|.|..|+|||+|| ..+++.. . -+ .++++-+.+... +.++.+.+.+.=... ..+...
T Consensus 162 rGQR~~Ifg~~g~GKT~Lal~~I~~~~--~--~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~ 237 (507)
T 1fx0_A 162 RGQRELIIGDRQTGKTAVATDTILNQQ--G--QNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQY 237 (507)
T ss_dssp TTCBCBEEESSSSSHHHHHHHHHHTCC--T--TTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTT
T ss_pred cCCEEEEecCCCCCccHHHHHHHHHhh--c--CCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHH
Confidence 4467899999999999996 5777732 2 34 356777776543 334444443321000 111111
Q ss_pred -HHHHHHHHHHHh--cCceEEEEecCC
Q 001993 281 -SETVLKQLRESI--EGKKFFLVLDDV 304 (985)
Q Consensus 281 -~~~~~~~l~~~l--~~k~~LlVlDdv 304 (985)
.......+.+++ +++.+||++||+
T Consensus 238 ~a~~~a~tiAEyfrd~G~dVLli~Dsl 264 (507)
T 1fx0_A 238 LAPYTGAALAEYFMYRERHTLIIYDDL 264 (507)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEEecH
Confidence 111222333444 589999999998
No 498
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=87.03 E-value=0.25 Score=46.30 Aligned_cols=22 Identities=27% Similarity=0.674 Sum_probs=19.7
Q ss_pred EEEEEccCCchHHHHHHHHhcc
Q 001993 218 IISITGMGGIGKTTLAKLIFND 239 (985)
Q Consensus 218 vv~I~G~gGiGKTtLa~~v~~~ 239 (985)
-|.++|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4889999999999999999764
No 499
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=87.00 E-value=0.54 Score=47.04 Aligned_cols=24 Identities=33% Similarity=0.563 Sum_probs=18.6
Q ss_pred CCEEEEEEccCCchHHHHHHHHhc
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
....|.|.|+.|+||||+++.++.
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999987
No 500
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=86.86 E-value=0.3 Score=50.30 Aligned_cols=23 Identities=39% Similarity=0.440 Sum_probs=21.0
Q ss_pred CEEEEEEccCCchHHHHHHHHhc
Q 001993 216 PTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
-.+++|+|+.|+|||||.+.++.
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999986
Done!