Query 001995
Match_columns 985
No_of_seqs 515 out of 4721
Neff 9.7
Searched_HMMs 46136
Date Thu Mar 28 14:08:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001995.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001995hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.1E-84 2.4E-89 774.6 45.1 821 3-948 2-856 (889)
2 PLN03210 Resistant to P. syrin 100.0 5E-62 1.1E-66 615.5 47.2 664 179-952 185-907 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 1.7E-42 3.6E-47 376.5 16.2 280 183-482 1-286 (287)
4 PLN00113 leucine-rich repeat r 99.9 4.3E-22 9.3E-27 253.4 16.5 325 602-949 138-486 (968)
5 PLN00113 leucine-rich repeat r 99.9 1.1E-21 2.3E-26 249.8 14.4 372 551-950 164-559 (968)
6 KOG0444 Cytoskeletal regulator 99.8 2.3E-23 5.1E-28 223.6 -5.2 338 553-954 34-378 (1255)
7 KOG4194 Membrane glycoprotein 99.8 9.9E-21 2.2E-25 202.8 5.5 344 577-946 78-447 (873)
8 PLN03210 Resistant to P. syrin 99.8 7.6E-19 1.7E-23 223.3 18.5 341 550-952 588-944 (1153)
9 KOG4194 Membrane glycoprotein 99.8 2.2E-20 4.8E-25 200.1 1.7 333 552-922 103-447 (873)
10 KOG0444 Cytoskeletal regulator 99.8 1.4E-20 3.1E-25 202.4 -5.9 339 552-951 8-352 (1255)
11 KOG0472 Leucine-rich repeat pr 99.7 4.6E-19 9.9E-24 182.2 -8.3 341 570-948 61-468 (565)
12 KOG0472 Leucine-rich repeat pr 99.7 3.2E-19 6.9E-24 183.4 -11.1 145 556-712 73-219 (565)
13 KOG0618 Serine/threonine phosp 99.5 7.8E-16 1.7E-20 174.8 -2.1 316 603-946 44-438 (1081)
14 PRK15387 E3 ubiquitin-protein 99.4 4.1E-13 8.8E-18 158.4 12.6 252 606-949 203-456 (788)
15 KOG0618 Serine/threonine phosp 99.4 1E-14 2.2E-19 165.8 -3.1 100 578-683 46-147 (1081)
16 PRK04841 transcriptional regul 99.4 3.2E-11 6.9E-16 153.2 26.9 276 215-532 31-332 (903)
17 KOG4658 Apoptotic ATPase [Sign 99.4 2.4E-13 5.3E-18 164.0 4.4 308 573-953 519-844 (889)
18 PRK00411 cdc6 cell division co 99.3 4.4E-10 9.6E-15 127.9 27.5 303 179-507 31-360 (394)
19 TIGR02928 orc1/cdc6 family rep 99.2 2.6E-09 5.5E-14 120.3 27.3 304 179-507 16-352 (365)
20 PRK15370 E3 ubiquitin-protein 99.2 1.4E-11 3E-16 146.8 8.9 89 606-707 180-270 (754)
21 KOG0617 Ras suppressor protein 99.2 3.3E-13 7.2E-18 123.4 -3.7 133 572-713 28-164 (264)
22 TIGR03015 pepcterm_ATPase puta 99.2 1.2E-09 2.5E-14 117.4 21.2 185 215-405 42-242 (269)
23 PRK15387 E3 ubiquitin-protein 99.2 3.5E-11 7.5E-16 142.3 10.1 107 555-684 205-313 (788)
24 KOG0617 Ras suppressor protein 99.1 2.1E-12 4.5E-17 118.3 -3.5 160 622-832 30-189 (264)
25 PF01637 Arch_ATPase: Archaeal 99.1 2.1E-10 4.6E-15 120.5 9.4 196 180-400 1-233 (234)
26 PRK00080 ruvB Holliday junctio 99.1 2.1E-09 4.5E-14 118.3 16.4 277 179-506 26-311 (328)
27 PRK15370 E3 ubiquitin-protein 99.1 2E-10 4.4E-15 136.9 8.5 243 553-895 180-425 (754)
28 COG2909 MalT ATP-dependent tra 99.1 2.3E-08 4.9E-13 114.9 24.1 282 214-533 35-339 (894)
29 TIGR00635 ruvB Holliday juncti 99.0 2.3E-09 4.9E-14 117.3 14.8 276 179-505 5-289 (305)
30 KOG4237 Extracellular matrix p 99.0 3.3E-11 7.1E-16 125.0 -3.4 261 578-857 68-340 (498)
31 PF05729 NACHT: NACHT domain 98.9 6.9E-09 1.5E-13 102.4 11.4 143 217-367 1-163 (166)
32 COG3899 Predicted ATPase [Gene 98.8 8.1E-08 1.7E-12 117.2 17.0 316 180-531 2-385 (849)
33 KOG4237 Extracellular matrix p 98.8 2.8E-10 6E-15 118.3 -3.8 117 608-730 73-193 (498)
34 KOG4341 F-box protein containi 98.8 3.6E-10 7.7E-15 118.6 -4.2 167 786-981 291-468 (483)
35 cd00116 LRR_RI Leucine-rich re 98.8 4.1E-10 8.8E-15 124.6 -4.1 83 598-681 17-116 (319)
36 PTZ00112 origin recognition co 98.8 2.4E-07 5.2E-12 107.3 17.9 214 179-405 756-986 (1164)
37 KOG0532 Leucine-rich repeat (L 98.8 6.3E-10 1.4E-14 120.8 -2.8 125 574-708 72-198 (722)
38 cd00116 LRR_RI Leucine-rich re 98.7 4.7E-09 1E-13 116.1 1.2 243 570-849 16-289 (319)
39 PRK13342 recombination factor 98.7 3.7E-07 8.1E-12 103.6 16.5 179 179-404 13-199 (413)
40 PRK06893 DNA replication initi 98.6 2.4E-07 5.2E-12 96.0 12.8 155 217-405 40-207 (229)
41 PF13401 AAA_22: AAA domain; P 98.6 8.6E-08 1.9E-12 90.3 7.7 118 215-334 3-125 (131)
42 COG2256 MGS1 ATPase related to 98.6 8.3E-07 1.8E-11 93.9 15.1 156 214-398 46-209 (436)
43 PF13191 AAA_16: AAA ATPase do 98.5 1.4E-07 2.9E-12 95.1 7.4 47 179-239 1-47 (185)
44 TIGR03420 DnaA_homol_Hda DnaA 98.5 9.4E-07 2E-11 92.1 14.0 157 215-405 37-205 (226)
45 PRK14961 DNA polymerase III su 98.5 2.6E-06 5.7E-11 94.8 18.1 190 179-398 17-217 (363)
46 PRK05564 DNA polymerase III su 98.5 3E-06 6.6E-11 92.6 17.3 178 179-399 5-188 (313)
47 PRK14960 DNA polymerase III su 98.5 2.3E-06 5.1E-11 98.1 16.5 178 179-399 16-217 (702)
48 PRK14949 DNA polymerase III su 98.5 2.3E-06 5E-11 101.2 16.5 183 179-401 17-220 (944)
49 PRK07003 DNA polymerase III su 98.5 2.8E-06 6.1E-11 98.5 16.5 180 179-401 17-221 (830)
50 cd00009 AAA The AAA+ (ATPases 98.5 1.4E-06 3E-11 83.9 11.7 125 181-336 1-131 (151)
51 COG1474 CDC6 Cdc6-related prot 98.5 7.9E-06 1.7E-10 89.8 18.8 208 179-401 18-238 (366)
52 KOG3207 Beta-tubulin folding c 98.4 3.5E-08 7.5E-13 104.5 -0.0 214 621-925 117-337 (505)
53 PTZ00202 tuzin; Provisional 98.4 8.9E-06 1.9E-10 87.8 17.6 164 179-367 263-434 (550)
54 PRK12402 replication factor C 98.4 4.5E-06 9.7E-11 93.0 16.4 198 179-400 16-225 (337)
55 PRK12323 DNA polymerase III su 98.4 4.7E-06 1E-10 95.4 16.4 199 179-401 17-225 (700)
56 COG3903 Predicted ATPase [Gene 98.4 6.8E-07 1.5E-11 95.4 8.1 238 214-464 12-258 (414)
57 PRK14963 DNA polymerase III su 98.4 1E-06 2.3E-11 101.0 10.3 194 179-398 15-214 (504)
58 PRK07471 DNA polymerase III su 98.4 1.8E-06 3.9E-11 95.1 11.5 195 179-401 20-238 (365)
59 PRK14957 DNA polymerase III su 98.4 9.5E-06 2.1E-10 93.3 17.3 186 179-404 17-224 (546)
60 PF05496 RuvB_N: Holliday junc 98.4 6.4E-06 1.4E-10 81.7 13.7 178 179-401 25-221 (233)
61 PF13173 AAA_14: AAA domain 98.4 1.4E-06 3E-11 81.4 8.6 121 217-359 3-127 (128)
62 PRK08691 DNA polymerase III su 98.4 7.5E-06 1.6E-10 95.0 15.9 179 179-400 17-219 (709)
63 PRK00440 rfc replication facto 98.3 1E-05 2.3E-10 89.2 16.7 181 179-399 18-201 (319)
64 PRK09112 DNA polymerase III su 98.3 8.5E-06 1.9E-10 89.3 15.4 193 179-401 24-240 (351)
65 PLN03025 replication factor C 98.3 1.4E-05 3E-10 87.6 17.2 182 179-398 14-197 (319)
66 PRK06645 DNA polymerase III su 98.3 1.8E-05 4E-10 90.4 18.2 194 179-398 22-226 (507)
67 PRK07994 DNA polymerase III su 98.3 9.3E-06 2E-10 94.8 16.0 194 179-401 17-220 (647)
68 PRK04195 replication factor C 98.3 3.4E-05 7.5E-10 89.5 20.8 186 179-405 15-206 (482)
69 TIGR02903 spore_lon_C ATP-depe 98.3 1.2E-05 2.7E-10 95.1 17.2 202 179-404 155-398 (615)
70 TIGR00678 holB DNA polymerase 98.3 2.2E-05 4.8E-10 78.9 16.5 91 294-396 95-186 (188)
71 PRK14956 DNA polymerase III su 98.3 7.6E-06 1.6E-10 91.5 14.0 194 179-398 19-219 (484)
72 PRK14964 DNA polymerase III su 98.3 1.9E-05 4.1E-10 89.4 17.4 181 179-398 14-214 (491)
73 PRK07940 DNA polymerase III su 98.3 1.9E-05 4.2E-10 87.7 17.2 184 179-401 6-213 (394)
74 PRK08727 hypothetical protein; 98.3 2E-05 4.4E-10 81.8 16.2 148 217-398 42-201 (233)
75 PRK14951 DNA polymerase III su 98.3 1.7E-05 3.7E-10 92.4 16.7 197 179-401 17-225 (618)
76 PRK14958 DNA polymerase III su 98.3 1.7E-05 3.7E-10 91.3 16.5 183 179-400 17-219 (509)
77 PRK05896 DNA polymerase III su 98.3 2E-05 4.3E-10 90.7 16.7 196 179-403 17-223 (605)
78 COG4886 Leucine-rich repeat (L 98.3 7.4E-07 1.6E-11 101.6 5.2 105 600-709 112-219 (394)
79 cd01128 rho_factor Transcripti 98.3 1.4E-06 2.9E-11 90.4 6.6 90 215-305 15-113 (249)
80 PRK14969 DNA polymerase III su 98.2 4.7E-05 1E-09 88.5 18.9 180 179-401 17-221 (527)
81 PF14580 LRR_9: Leucine-rich r 98.2 6.2E-07 1.3E-11 87.2 2.9 79 603-684 41-124 (175)
82 TIGR02397 dnaX_nterm DNA polym 98.2 4.8E-05 1E-09 85.4 18.6 184 179-402 15-219 (355)
83 PRK14962 DNA polymerase III su 98.2 3.6E-05 7.9E-10 87.7 17.2 188 179-405 15-223 (472)
84 PRK08903 DnaA regulatory inact 98.2 2.8E-05 6E-10 80.9 15.1 153 215-405 41-203 (227)
85 PRK13341 recombination factor 98.2 1.4E-05 3E-10 95.4 14.2 173 179-396 29-212 (725)
86 PF05621 TniB: Bacterial TniB 98.2 4.7E-05 1E-09 79.4 15.9 200 185-398 44-258 (302)
87 PRK14955 DNA polymerase III su 98.2 4.2E-05 9E-10 86.3 16.8 198 179-399 17-226 (397)
88 KOG2543 Origin recognition com 98.2 0.00011 2.3E-09 77.6 18.1 171 176-366 5-192 (438)
89 KOG4341 F-box protein containi 98.2 9E-08 1.9E-12 100.9 -4.8 264 626-955 139-418 (483)
90 KOG2120 SCF ubiquitin ligase, 98.1 1.1E-07 2.3E-12 95.7 -4.2 113 756-896 256-374 (419)
91 PF14516 AAA_35: AAA-like doma 98.1 0.00025 5.5E-09 77.8 21.7 201 179-408 12-246 (331)
92 KOG2227 Pre-initiation complex 98.1 4E-05 8.7E-10 82.8 14.6 214 179-405 151-376 (529)
93 PRK08084 DNA replication initi 98.1 8.3E-05 1.8E-09 77.4 16.9 156 216-405 45-213 (235)
94 PRK09376 rho transcription ter 98.1 5.8E-06 1.3E-10 89.1 7.8 90 215-305 168-266 (416)
95 PRK09087 hypothetical protein; 98.1 6.2E-05 1.4E-09 77.5 15.1 145 216-404 44-198 (226)
96 PF14580 LRR_9: Leucine-rich r 98.1 1.7E-06 3.7E-11 84.1 3.3 106 602-712 17-126 (175)
97 PF00308 Bac_DnaA: Bacterial d 98.1 6.5E-05 1.4E-09 77.0 14.3 165 214-403 32-210 (219)
98 PRK09111 DNA polymerase III su 98.1 9.1E-05 2E-09 86.7 16.9 196 179-401 25-233 (598)
99 KOG2028 ATPase related to the 98.1 4.7E-05 1E-09 79.1 12.7 159 214-396 160-331 (554)
100 PRK14952 DNA polymerase III su 98.1 0.00012 2.6E-09 85.2 17.8 198 179-405 14-224 (584)
101 PRK14959 DNA polymerase III su 98.1 9.2E-05 2E-09 85.8 16.6 197 179-405 17-225 (624)
102 PRK14087 dnaA chromosomal repl 98.0 0.00012 2.6E-09 83.5 16.9 169 216-405 141-323 (450)
103 PRK07764 DNA polymerase III su 98.0 0.0001 2.2E-09 89.3 17.2 190 179-398 16-218 (824)
104 PRK14970 DNA polymerase III su 98.0 0.00015 3.2E-09 81.5 17.2 176 179-398 18-206 (367)
105 PRK14953 DNA polymerase III su 98.0 0.00021 4.5E-09 82.1 18.4 180 179-402 17-221 (486)
106 KOG1259 Nischarin, modulator o 98.0 1.1E-06 2.4E-11 88.4 0.0 108 756-896 303-410 (490)
107 PRK07133 DNA polymerase III su 98.0 0.00016 3.5E-09 85.1 17.7 191 179-401 19-220 (725)
108 PRK14950 DNA polymerase III su 98.0 7E-05 1.5E-09 88.7 14.9 195 179-402 17-222 (585)
109 PRK05642 DNA replication initi 98.0 0.00017 3.6E-09 75.0 15.8 156 216-405 45-212 (234)
110 KOG0532 Leucine-rich repeat (L 98.0 3.3E-07 7.1E-12 100.2 -4.8 133 570-713 114-248 (722)
111 KOG1259 Nischarin, modulator o 98.0 1.7E-06 3.7E-11 87.1 0.6 131 573-712 280-412 (490)
112 PRK14954 DNA polymerase III su 98.0 0.00024 5.1E-09 83.4 17.9 201 179-401 17-229 (620)
113 TIGR01242 26Sp45 26S proteasom 98.0 6.2E-05 1.3E-09 84.2 12.6 187 179-395 123-328 (364)
114 KOG1909 Ran GTPase-activating 97.9 8.7E-07 1.9E-11 91.7 -2.2 148 758-925 155-309 (382)
115 KOG2120 SCF ubiquitin ligase, 97.9 3.9E-07 8.4E-12 91.8 -4.6 161 756-949 206-374 (419)
116 PHA02544 44 clamp loader, smal 97.9 0.0001 2.2E-09 81.1 13.1 148 179-365 22-171 (316)
117 KOG3207 Beta-tubulin folding c 97.9 2.1E-06 4.5E-11 91.4 -0.4 151 550-706 120-278 (505)
118 COG4886 Leucine-rich repeat (L 97.9 7.5E-06 1.6E-10 93.3 4.1 123 574-705 113-238 (394)
119 PRK08451 DNA polymerase III su 97.9 0.00037 8.1E-09 79.9 17.6 180 179-401 15-218 (535)
120 TIGR00767 rho transcription te 97.9 2.1E-05 4.5E-10 85.4 7.0 90 215-305 167-265 (415)
121 PRK11331 5-methylcytosine-spec 97.9 6.1E-05 1.3E-09 83.3 10.6 120 179-320 176-298 (459)
122 PRK06305 DNA polymerase III su 97.9 0.00046 1E-08 78.7 17.4 182 179-401 18-223 (451)
123 PRK14971 DNA polymerase III su 97.8 0.00056 1.2E-08 80.9 18.0 176 179-398 18-219 (614)
124 PRK06620 hypothetical protein; 97.8 0.00049 1.1E-08 70.2 15.4 135 217-399 45-187 (214)
125 PRK14948 DNA polymerase III su 97.8 0.00054 1.2E-08 81.0 17.7 196 179-401 17-222 (620)
126 PF13855 LRR_8: Leucine rich r 97.8 1.7E-05 3.6E-10 63.0 3.6 57 625-683 1-59 (61)
127 PRK07399 DNA polymerase III su 97.8 0.00074 1.6E-08 73.1 17.2 197 179-401 5-221 (314)
128 TIGR03345 VI_ClpV1 type VI sec 97.8 0.00019 4.1E-09 88.2 14.0 154 179-366 188-362 (852)
129 PF12799 LRR_4: Leucine Rich r 97.8 2.7E-05 5.8E-10 56.6 3.9 40 625-666 1-40 (44)
130 PRK14965 DNA polymerase III su 97.8 0.00058 1.3E-08 80.5 17.2 195 179-403 17-223 (576)
131 PLN03150 hypothetical protein; 97.8 3E-05 6.5E-10 92.7 6.4 90 606-697 420-512 (623)
132 CHL00181 cbbX CbbX; Provisiona 97.8 0.0011 2.4E-08 70.9 17.8 137 217-369 60-211 (287)
133 KOG0989 Replication factor C, 97.8 0.00025 5.5E-09 72.7 11.8 183 179-395 37-224 (346)
134 TIGR00362 DnaA chromosomal rep 97.8 0.00081 1.8E-08 76.5 17.5 159 216-399 136-308 (405)
135 PRK06647 DNA polymerase III su 97.8 0.00089 1.9E-08 78.2 18.0 193 179-400 17-219 (563)
136 COG3267 ExeA Type II secretory 97.7 0.0012 2.6E-08 66.4 16.0 184 214-404 49-248 (269)
137 PRK05707 DNA polymerase III su 97.7 0.00064 1.4E-08 74.0 15.2 98 294-401 105-203 (328)
138 PRK05563 DNA polymerase III su 97.7 0.0011 2.5E-08 77.7 18.1 190 179-399 17-218 (559)
139 PRK15386 type III secretion pr 97.7 9.5E-05 2.1E-09 80.8 8.1 64 623-694 50-113 (426)
140 TIGR02639 ClpA ATP-dependent C 97.7 0.00027 5.8E-09 86.3 12.7 157 179-367 183-358 (731)
141 TIGR02880 cbbX_cfxQ probable R 97.7 0.00075 1.6E-08 72.3 14.2 136 218-369 60-210 (284)
142 PLN03150 hypothetical protein; 97.7 8.2E-05 1.8E-09 89.0 7.6 103 578-683 419-525 (623)
143 TIGR02881 spore_V_K stage V sp 97.6 0.00071 1.5E-08 71.9 13.9 173 179-369 7-193 (261)
144 PRK03992 proteasome-activating 97.6 0.00047 1E-08 77.5 12.8 187 179-395 132-337 (389)
145 PF00004 AAA: ATPase family as 97.6 0.00018 3.9E-09 67.6 8.0 96 219-334 1-111 (132)
146 PRK14086 dnaA chromosomal repl 97.6 0.0029 6.2E-08 73.3 18.6 156 217-397 315-484 (617)
147 PRK00149 dnaA chromosomal repl 97.6 0.0016 3.5E-08 75.0 16.9 160 215-399 147-320 (450)
148 COG2255 RuvB Holliday junction 97.6 0.0025 5.5E-08 64.9 15.5 175 179-398 27-220 (332)
149 PRK14088 dnaA chromosomal repl 97.6 0.0025 5.4E-08 72.7 17.7 159 216-398 130-302 (440)
150 PRK08116 hypothetical protein; 97.6 0.00035 7.6E-09 73.9 9.8 104 217-335 115-221 (268)
151 KOG0531 Protein phosphatase 1, 97.5 1.3E-05 2.9E-10 91.4 -1.0 82 600-685 91-174 (414)
152 PRK12422 chromosomal replicati 97.5 0.002 4.3E-08 73.3 16.1 154 216-394 141-306 (445)
153 CHL00095 clpC Clp protease ATP 97.5 0.00042 9.1E-09 85.7 11.4 157 179-366 180-353 (821)
154 smart00382 AAA ATPases associa 97.5 0.00059 1.3E-08 64.8 10.2 88 217-308 3-91 (148)
155 PRK08769 DNA polymerase III su 97.5 0.0023 4.9E-08 69.0 15.3 97 294-402 112-209 (319)
156 PF13855 LRR_8: Leucine rich r 97.5 7.7E-05 1.7E-09 59.1 3.0 55 605-660 2-60 (61)
157 PRK08058 DNA polymerase III su 97.5 0.0019 4.2E-08 70.8 14.5 162 179-366 6-181 (329)
158 PRK11034 clpA ATP-dependent Cl 97.4 0.00077 1.7E-08 81.2 12.0 156 179-366 187-361 (758)
159 KOG1909 Ran GTPase-activating 97.4 4.7E-05 1E-09 79.2 1.1 256 572-849 25-309 (382)
160 COG0593 DnaA ATPase involved i 97.4 0.0023 4.9E-08 70.4 13.8 139 215-372 112-262 (408)
161 PRK06871 DNA polymerase III su 97.4 0.00068 1.5E-08 73.1 9.7 163 216-398 24-200 (325)
162 KOG0531 Protein phosphatase 1, 97.4 4.3E-05 9.4E-10 87.2 0.5 85 619-710 89-173 (414)
163 PF13177 DNA_pol3_delta2: DNA 97.4 0.0016 3.5E-08 63.3 11.3 120 182-336 1-143 (162)
164 PTZ00361 26 proteosome regulat 97.4 0.00091 2E-08 75.2 10.8 167 179-369 184-369 (438)
165 KOG0991 Replication factor C, 97.4 0.003 6.4E-08 62.1 12.7 43 179-238 28-70 (333)
166 PRK10536 hypothetical protein; 97.4 0.0034 7.4E-08 64.5 13.7 136 179-337 56-215 (262)
167 PRK15386 type III secretion pr 97.3 0.00025 5.4E-09 77.6 5.6 67 784-857 47-113 (426)
168 PRK06090 DNA polymerase III su 97.3 0.0081 1.8E-07 64.7 16.8 165 215-401 24-201 (319)
169 TIGR03346 chaperone_ClpB ATP-d 97.3 0.0016 3.6E-08 80.8 13.2 155 179-366 174-348 (852)
170 PRK07993 DNA polymerase III su 97.3 0.0061 1.3E-07 66.6 15.7 165 215-398 23-201 (334)
171 PF12799 LRR_4: Leucine Rich r 97.3 0.0003 6.5E-09 51.1 3.7 37 649-686 1-37 (44)
172 KOG1514 Origin recognition com 97.2 0.011 2.3E-07 67.9 16.7 205 179-404 397-624 (767)
173 PF05673 DUF815: Protein of un 97.2 0.0065 1.4E-07 61.6 13.4 122 179-338 28-154 (249)
174 PRK10865 protein disaggregatio 97.2 0.0023 5.1E-08 79.1 12.3 155 179-367 179-354 (857)
175 TIGR00602 rad24 checkpoint pro 97.2 0.003 6.4E-08 74.3 12.3 49 179-239 85-133 (637)
176 PRK08181 transposase; Validate 97.2 0.0012 2.6E-08 69.5 8.1 101 217-335 107-209 (269)
177 PRK12377 putative replication 97.1 0.00095 2.1E-08 69.3 7.0 102 216-334 101-205 (248)
178 PRK06964 DNA polymerase III su 97.1 0.015 3.3E-07 63.3 16.4 94 294-401 131-225 (342)
179 TIGR00763 lon ATP-dependent pr 97.1 0.016 3.4E-07 71.5 18.5 165 179-367 321-505 (775)
180 PRK08699 DNA polymerase III su 97.1 0.0018 3.9E-08 70.4 9.2 150 215-366 20-184 (325)
181 TIGR02640 gas_vesic_GvpN gas v 97.1 0.013 2.7E-07 62.2 15.5 108 218-335 23-161 (262)
182 PRK10865 protein disaggregatio 97.1 0.0066 1.4E-07 75.2 14.9 140 179-334 569-720 (857)
183 PTZ00454 26S protease regulato 97.1 0.0042 9.1E-08 69.5 11.9 187 179-395 146-351 (398)
184 TIGR03689 pup_AAA proteasome A 97.1 0.011 2.3E-07 67.8 15.2 174 179-368 183-379 (512)
185 TIGR02639 ClpA ATP-dependent C 97.1 0.0066 1.4E-07 74.3 14.7 125 179-322 455-580 (731)
186 PRK06921 hypothetical protein; 97.1 0.0029 6.3E-08 66.9 9.9 99 216-334 117-224 (266)
187 PF01695 IstB_IS21: IstB-like 97.0 0.00045 9.6E-09 68.2 3.4 101 216-335 47-150 (178)
188 COG0542 clpA ATP-binding subun 97.0 0.0024 5.3E-08 75.4 9.9 128 179-322 492-620 (786)
189 PF04665 Pox_A32: Poxvirus A32 97.0 0.0022 4.7E-08 65.6 8.2 38 215-254 12-49 (241)
190 PRK06526 transposase; Provisio 97.0 0.0015 3.2E-08 68.5 7.2 100 217-335 99-201 (254)
191 PRK10787 DNA-binding ATP-depen 97.0 0.0058 1.3E-07 74.5 13.3 165 179-367 323-506 (784)
192 KOG3665 ZYG-1-like serine/thre 97.0 0.0003 6.5E-09 83.9 2.1 128 551-683 122-260 (699)
193 CHL00176 ftsH cell division pr 97.0 0.0073 1.6E-07 71.6 13.5 185 179-394 184-387 (638)
194 TIGR03346 chaperone_ClpB ATP-d 97.0 0.0042 9.1E-08 77.2 12.1 138 179-334 566-717 (852)
195 KOG3665 ZYG-1-like serine/thre 97.0 0.00045 9.8E-09 82.4 3.3 101 577-681 122-228 (699)
196 PRK08118 topology modulation p 97.0 0.0013 2.9E-08 64.3 5.9 34 218-251 3-37 (167)
197 COG1373 Predicted ATPase (AAA+ 96.9 0.0095 2.1E-07 67.0 13.3 120 218-363 39-163 (398)
198 TIGR03345 VI_ClpV1 type VI sec 96.9 0.0035 7.5E-08 77.3 10.5 138 179-334 567-718 (852)
199 PRK07952 DNA replication prote 96.9 0.0046 1E-07 64.0 9.8 103 216-334 99-204 (244)
200 PRK09183 transposase/IS protei 96.9 0.0042 9.1E-08 65.5 9.6 101 217-335 103-206 (259)
201 PRK13531 regulatory ATPase Rav 96.9 0.0049 1.1E-07 69.2 10.2 153 179-366 21-193 (498)
202 PRK08939 primosomal protein Dn 96.9 0.0054 1.2E-07 66.1 10.2 102 215-334 155-260 (306)
203 PRK04296 thymidine kinase; Pro 96.9 0.0029 6.4E-08 63.4 7.6 113 217-336 3-117 (190)
204 PF07693 KAP_NTPase: KAP famil 96.8 0.058 1.2E-06 59.6 18.6 42 184-239 2-43 (325)
205 PRK12608 transcription termina 96.8 0.0075 1.6E-07 65.5 10.6 101 186-304 119-229 (380)
206 TIGR02237 recomb_radB DNA repa 96.8 0.0049 1.1E-07 63.2 8.9 49 214-265 10-58 (209)
207 PRK09361 radB DNA repair and r 96.8 0.0058 1.3E-07 63.4 9.3 47 214-263 21-67 (225)
208 COG0470 HolB ATPase involved i 96.8 0.01 2.2E-07 65.7 11.7 125 179-334 2-148 (325)
209 KOG2982 Uncharacterized conser 96.7 0.00035 7.7E-09 71.0 -0.0 79 601-683 68-156 (418)
210 TIGR01241 FtsH_fam ATP-depende 96.7 0.016 3.4E-07 67.8 13.6 186 179-395 56-260 (495)
211 KOG2982 Uncharacterized conser 96.7 0.00015 3.2E-09 73.7 -2.8 59 624-684 44-108 (418)
212 PHA00729 NTP-binding motif con 96.7 0.0064 1.4E-07 61.4 8.8 25 214-238 15-39 (226)
213 COG0466 Lon ATP-dependent Lon 96.7 0.047 1E-06 63.1 16.4 163 179-368 324-509 (782)
214 PRK07261 topology modulation p 96.7 0.0038 8.2E-08 61.4 6.9 65 218-305 2-67 (171)
215 KOG0741 AAA+-type ATPase [Post 96.7 0.021 4.5E-07 63.1 12.8 163 214-405 536-716 (744)
216 KOG2228 Origin recognition com 96.7 0.02 4.3E-07 59.9 12.0 172 179-368 25-220 (408)
217 PRK05541 adenylylsulfate kinas 96.7 0.0074 1.6E-07 59.9 8.9 38 214-253 5-42 (176)
218 KOG1859 Leucine-rich repeat pr 96.7 8E-05 1.7E-09 84.2 -5.7 83 619-709 181-264 (1096)
219 CHL00095 clpC Clp protease ATP 96.7 0.0084 1.8E-07 74.3 11.1 140 179-334 510-661 (821)
220 PF10443 RNA12: RNA12 protein; 96.7 0.12 2.6E-06 56.9 18.5 214 183-420 1-298 (431)
221 COG2812 DnaX DNA polymerase II 96.7 0.0075 1.6E-07 68.5 9.7 187 179-396 17-215 (515)
222 PRK06835 DNA replication prote 96.6 0.0042 9.2E-08 67.5 7.1 102 217-334 184-288 (329)
223 COG1484 DnaC DNA replication p 96.6 0.0024 5.3E-08 66.9 4.9 82 215-313 104-185 (254)
224 KOG2004 Mitochondrial ATP-depe 96.6 0.02 4.4E-07 65.6 12.3 102 179-305 412-515 (906)
225 TIGR02902 spore_lonB ATP-depen 96.6 0.0066 1.4E-07 71.0 8.9 43 179-238 66-108 (531)
226 cd01393 recA_like RecA is a b 96.6 0.014 2.9E-07 60.7 10.3 89 214-305 17-124 (226)
227 PRK04132 replication factor C 96.5 0.043 9.4E-07 66.6 15.6 154 224-399 574-729 (846)
228 cd01123 Rad51_DMC1_radA Rad51_ 96.5 0.012 2.7E-07 61.4 10.0 56 214-270 17-76 (235)
229 cd01394 radB RadB. The archaea 96.5 0.011 2.4E-07 60.9 9.2 44 214-259 17-60 (218)
230 KOG1859 Leucine-rich repeat pr 96.5 0.00016 3.5E-09 81.8 -5.1 22 618-640 102-123 (1096)
231 TIGR01243 CDC48 AAA family ATP 96.5 0.026 5.7E-07 69.3 13.5 188 179-396 179-382 (733)
232 COG5238 RNA1 Ran GTPase-activa 96.4 0.00075 1.6E-08 67.8 0.0 85 600-684 26-131 (388)
233 PRK11034 clpA ATP-dependent Cl 96.4 0.014 3.1E-07 70.5 10.5 125 179-322 459-584 (758)
234 TIGR01243 CDC48 AAA family ATP 96.4 0.038 8.3E-07 68.0 14.4 187 179-395 454-657 (733)
235 cd01120 RecA-like_NTPases RecA 96.4 0.015 3.2E-07 56.7 9.0 40 218-259 1-40 (165)
236 PF14532 Sigma54_activ_2: Sigm 96.4 0.0036 7.9E-08 59.2 4.3 108 181-335 1-110 (138)
237 PRK11889 flhF flagellar biosyn 96.4 0.03 6.6E-07 61.1 11.6 104 215-320 240-347 (436)
238 smart00763 AAA_PrkA PrkA AAA d 96.3 0.0037 8.1E-08 67.6 4.6 50 179-239 52-101 (361)
239 PF07728 AAA_5: AAA domain (dy 96.3 0.0012 2.6E-08 62.6 0.7 89 219-320 2-90 (139)
240 PF02562 PhoH: PhoH-like prote 96.3 0.0084 1.8E-07 59.9 6.7 132 182-336 4-157 (205)
241 PRK06696 uridine kinase; Valid 96.3 0.0041 9E-08 64.3 4.7 43 182-238 2-44 (223)
242 KOG1969 DNA replication checkp 96.2 0.015 3.3E-07 66.8 8.6 90 213-320 323-412 (877)
243 COG2884 FtsE Predicted ATPase 96.2 0.06 1.3E-06 51.8 11.3 61 283-343 143-205 (223)
244 PF13207 AAA_17: AAA domain; P 96.2 0.0029 6.3E-08 58.3 2.6 21 218-238 1-21 (121)
245 cd01133 F1-ATPase_beta F1 ATP 96.2 0.013 2.8E-07 61.3 7.4 88 215-304 68-172 (274)
246 TIGR02974 phageshock_pspF psp 96.2 0.03 6.4E-07 61.4 10.7 129 180-334 1-143 (329)
247 COG0542 clpA ATP-binding subun 96.2 0.014 3E-07 69.2 8.4 155 179-366 171-345 (786)
248 PF00158 Sigma54_activat: Sigm 96.2 0.015 3.2E-07 56.8 7.3 131 180-335 1-144 (168)
249 TIGR02012 tigrfam_recA protein 96.1 0.024 5.2E-07 61.0 9.3 85 214-305 53-143 (321)
250 PRK11608 pspF phage shock prot 96.1 0.04 8.6E-07 60.4 11.2 134 179-335 7-151 (326)
251 PF05659 RPW8: Arabidopsis bro 96.1 0.088 1.9E-06 49.6 11.8 84 1-84 2-86 (147)
252 cd00544 CobU Adenosylcobinamid 96.1 0.024 5.2E-07 55.3 8.4 80 218-304 1-82 (169)
253 cd00983 recA RecA is a bacter 96.1 0.027 6E-07 60.6 9.5 85 214-305 53-143 (325)
254 TIGR03499 FlhF flagellar biosy 96.1 0.023 5E-07 60.8 8.8 88 215-304 193-281 (282)
255 PRK06067 flagellar accessory p 96.1 0.041 8.9E-07 57.4 10.6 87 214-305 23-130 (234)
256 PRK09354 recA recombinase A; P 96.0 0.029 6.3E-07 60.9 9.5 85 214-305 58-148 (349)
257 PF00448 SRP54: SRP54-type pro 96.0 0.024 5.1E-07 57.0 8.2 88 216-305 1-93 (196)
258 PRK14722 flhF flagellar biosyn 96.0 0.051 1.1E-06 59.8 11.4 90 215-306 136-226 (374)
259 KOG4579 Leucine-rich repeat (L 96.0 0.0018 3.9E-08 58.4 0.1 54 626-681 78-131 (177)
260 PRK12723 flagellar biosynthesi 96.0 0.084 1.8E-06 58.7 13.0 104 214-320 172-281 (388)
261 cd00561 CobA_CobO_BtuR ATP:cor 96.0 0.038 8.2E-07 52.8 8.9 117 217-336 3-139 (159)
262 PF08423 Rad51: Rad51; InterP 95.9 0.032 6.9E-07 58.7 9.1 57 215-272 37-97 (256)
263 PRK05800 cobU adenosylcobinami 95.9 0.015 3.2E-07 56.9 6.1 80 218-304 3-85 (170)
264 PRK12724 flagellar biosynthesi 95.9 0.044 9.4E-07 60.7 10.0 25 215-239 222-246 (432)
265 PRK00771 signal recognition pa 95.9 0.11 2.4E-06 58.7 13.5 89 214-305 93-185 (437)
266 cd01131 PilT Pilus retraction 95.9 0.017 3.7E-07 58.4 6.4 111 217-339 2-113 (198)
267 KOG1947 Leucine rich repeat pr 95.9 0.0015 3.2E-08 76.8 -1.5 43 913-955 400-444 (482)
268 cd03214 ABC_Iron-Siderophores_ 95.8 0.093 2E-06 52.2 11.6 120 216-338 25-161 (180)
269 COG4608 AppF ABC-type oligopep 95.8 0.068 1.5E-06 55.0 10.5 125 215-343 38-178 (268)
270 PF13604 AAA_30: AAA domain; P 95.8 0.038 8.2E-07 55.7 8.8 105 217-336 19-132 (196)
271 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.8 0.07 1.5E-06 50.8 10.1 105 216-340 26-132 (144)
272 PRK14974 cell division protein 95.8 0.074 1.6E-06 57.9 11.5 101 214-318 138-247 (336)
273 COG1618 Predicted nucleotide k 95.8 0.0085 1.8E-07 55.9 3.5 31 216-248 5-36 (179)
274 cd01122 GP4d_helicase GP4d_hel 95.8 0.092 2E-06 56.2 12.2 56 215-273 29-84 (271)
275 PRK08233 hypothetical protein; 95.8 0.028 6.2E-07 56.0 7.6 23 216-238 3-25 (182)
276 TIGR01817 nifA Nif-specific re 95.7 0.055 1.2E-06 64.1 11.0 133 179-334 197-340 (534)
277 PHA02244 ATPase-like protein 95.7 0.07 1.5E-06 57.9 10.6 21 218-238 121-141 (383)
278 PRK07667 uridine kinase; Provi 95.7 0.021 4.5E-07 57.5 6.3 25 214-238 15-39 (193)
279 COG0572 Udk Uridine kinase [Nu 95.7 0.019 4.1E-07 57.4 5.7 78 214-296 6-85 (218)
280 TIGR02238 recomb_DMC1 meiotic 95.7 0.042 9.2E-07 59.4 8.9 59 214-273 94-156 (313)
281 cd03247 ABCC_cytochrome_bd The 95.6 0.075 1.6E-06 52.8 10.0 117 217-339 29-161 (178)
282 cd03115 SRP The signal recogni 95.6 0.089 1.9E-06 51.9 10.5 86 218-305 2-92 (173)
283 PRK09270 nucleoside triphospha 95.6 0.06 1.3E-06 55.9 9.6 25 214-238 31-55 (229)
284 CHL00195 ycf46 Ycf46; Provisio 95.6 0.1 2.2E-06 60.1 12.1 157 215-395 258-429 (489)
285 PRK07132 DNA polymerase III su 95.6 0.39 8.6E-06 51.5 15.8 154 215-400 17-184 (299)
286 KOG1947 Leucine rich repeat pr 95.6 0.002 4.4E-08 75.6 -1.7 38 918-955 380-418 (482)
287 TIGR03877 thermo_KaiC_1 KaiC d 95.6 0.088 1.9E-06 54.9 10.6 50 214-267 19-68 (237)
288 COG0468 RecA RecA/RadA recombi 95.6 0.048 1E-06 57.3 8.5 89 214-304 58-150 (279)
289 PLN03186 DNA repair protein RA 95.6 0.064 1.4E-06 58.6 9.8 59 214-273 121-183 (342)
290 KOG0734 AAA+-type ATPase conta 95.5 0.038 8.3E-07 61.2 7.8 54 179-240 305-361 (752)
291 KOG0733 Nuclear AAA ATPase (VC 95.5 0.031 6.8E-07 62.9 7.3 102 179-305 191-292 (802)
292 TIGR02236 recomb_radA DNA repa 95.5 0.067 1.4E-06 58.5 10.1 58 214-272 93-154 (310)
293 PF00485 PRK: Phosphoribulokin 95.5 0.041 8.8E-07 55.5 7.7 79 218-299 1-87 (194)
294 PRK15429 formate hydrogenlyase 95.5 0.059 1.3E-06 65.8 10.5 134 179-335 377-521 (686)
295 PRK04301 radA DNA repair and r 95.5 0.078 1.7E-06 58.1 10.3 58 214-272 100-161 (317)
296 PLN03187 meiotic recombination 95.5 0.091 2E-06 57.4 10.5 59 214-273 124-186 (344)
297 cd03223 ABCD_peroxisomal_ALDP 95.4 0.14 3E-06 50.1 11.0 115 216-339 27-152 (166)
298 PRK12726 flagellar biosynthesi 95.4 0.15 3.3E-06 55.6 12.0 91 214-306 204-296 (407)
299 COG1222 RPT1 ATP-dependent 26S 95.4 0.36 7.7E-06 51.5 14.2 196 179-405 152-371 (406)
300 COG1419 FlhF Flagellar GTP-bin 95.4 0.045 9.8E-07 59.7 7.9 103 215-320 202-308 (407)
301 PF07724 AAA_2: AAA domain (Cd 95.4 0.011 2.4E-07 57.9 2.9 39 216-256 3-42 (171)
302 cd02025 PanK Pantothenate kina 95.4 0.054 1.2E-06 55.6 8.2 21 218-238 1-21 (220)
303 PF01583 APS_kinase: Adenylyls 95.4 0.02 4.2E-07 54.5 4.5 36 216-253 2-37 (156)
304 PRK10867 signal recognition pa 95.4 0.079 1.7E-06 59.7 10.0 25 214-238 98-122 (433)
305 cd03216 ABC_Carb_Monos_I This 95.4 0.06 1.3E-06 52.5 8.0 115 217-339 27-146 (163)
306 PRK13695 putative NTPase; Prov 95.4 0.013 2.8E-07 58.0 3.3 22 218-239 2-23 (174)
307 cd03238 ABC_UvrA The excision 95.3 0.078 1.7E-06 52.2 8.7 114 216-339 21-153 (176)
308 TIGR00064 ftsY signal recognit 95.3 0.083 1.8E-06 56.1 9.5 90 214-306 70-165 (272)
309 PRK15455 PrkA family serine pr 95.3 0.016 3.5E-07 65.9 4.3 49 179-238 77-125 (644)
310 PTZ00301 uridine kinase; Provi 95.3 0.03 6.4E-07 56.8 5.8 23 216-238 3-25 (210)
311 PRK05703 flhF flagellar biosyn 95.3 0.091 2E-06 59.5 10.4 88 216-305 221-309 (424)
312 TIGR02239 recomb_RAD51 DNA rep 95.3 0.085 1.8E-06 57.3 9.6 58 214-272 94-155 (316)
313 cd01124 KaiC KaiC is a circadi 95.3 0.11 2.3E-06 52.1 9.9 45 218-266 1-45 (187)
314 KOG4579 Leucine-rich repeat (L 95.3 0.0044 9.5E-08 56.0 -0.2 90 575-669 51-142 (177)
315 KOG2123 Uncharacterized conser 95.3 0.00087 1.9E-08 67.6 -5.2 53 790-847 20-72 (388)
316 cd03222 ABC_RNaseL_inhibitor T 95.3 0.13 2.9E-06 50.6 10.1 102 217-340 26-137 (177)
317 cd03228 ABCC_MRP_Like The MRP 95.3 0.095 2.1E-06 51.6 9.2 118 216-340 28-160 (171)
318 PRK05439 pantothenate kinase; 95.3 0.099 2.1E-06 56.1 9.8 81 213-296 83-166 (311)
319 TIGR03881 KaiC_arch_4 KaiC dom 95.2 0.21 4.6E-06 51.9 12.3 116 214-334 18-165 (229)
320 COG1875 NYN ribonuclease and A 95.2 0.075 1.6E-06 56.4 8.5 136 180-335 226-388 (436)
321 cd03281 ABC_MSH5_euk MutS5 hom 95.2 0.04 8.6E-07 56.3 6.6 122 216-342 29-161 (213)
322 KOG1644 U2-associated snRNP A' 95.2 0.024 5.3E-07 55.0 4.6 93 781-895 56-150 (233)
323 COG2607 Predicted ATPase (AAA+ 95.2 0.45 9.7E-06 47.8 13.1 105 179-321 61-166 (287)
324 cd03230 ABC_DR_subfamily_A Thi 95.2 0.082 1.8E-06 52.2 8.4 119 216-340 26-160 (173)
325 PRK08533 flagellar accessory p 95.2 0.15 3.3E-06 52.8 10.7 49 215-267 23-71 (230)
326 PRK15453 phosphoribulokinase; 95.1 0.21 4.6E-06 52.2 11.4 78 214-293 3-88 (290)
327 PRK12727 flagellar biosynthesi 95.1 0.066 1.4E-06 60.9 8.2 89 215-305 349-438 (559)
328 TIGR00959 ffh signal recogniti 95.1 0.2 4.3E-06 56.6 12.0 91 214-305 97-192 (428)
329 KOG0924 mRNA splicing factor A 95.1 0.11 2.3E-06 59.2 9.5 116 216-337 371-512 (1042)
330 PTZ00035 Rad51 protein; Provis 95.1 0.16 3.5E-06 55.7 11.0 58 214-272 116-177 (337)
331 PLN00020 ribulose bisphosphate 95.0 0.046 1E-06 58.9 6.5 26 214-239 146-171 (413)
332 KOG2739 Leucine-rich acidic nu 95.0 0.0062 1.3E-07 61.6 -0.1 59 621-681 61-124 (260)
333 COG1136 SalX ABC-type antimicr 95.0 0.26 5.7E-06 49.9 11.4 57 286-342 151-210 (226)
334 cd01125 repA Hexameric Replica 95.0 0.16 3.4E-06 53.2 10.5 21 218-238 3-23 (239)
335 KOG0735 AAA+-type ATPase [Post 95.0 0.029 6.3E-07 64.3 4.9 71 215-305 430-504 (952)
336 PRK10733 hflB ATP-dependent me 94.9 0.16 3.5E-06 61.2 11.5 166 179-369 153-337 (644)
337 COG1121 ZnuC ABC-type Mn/Zn tr 94.9 0.074 1.6E-06 54.7 7.4 121 217-339 31-203 (254)
338 COG5238 RNA1 Ran GTPase-activa 94.9 0.011 2.4E-07 59.7 1.3 89 575-664 28-134 (388)
339 KOG1644 U2-associated snRNP A' 94.9 0.025 5.4E-07 54.9 3.6 81 626-710 43-124 (233)
340 PF08433 KTI12: Chromatin asso 94.9 0.043 9.3E-07 58.0 5.7 23 217-239 2-24 (270)
341 PRK00889 adenylylsulfate kinas 94.9 0.13 2.8E-06 50.9 8.9 25 215-239 3-27 (175)
342 PF13238 AAA_18: AAA domain; P 94.9 0.017 3.6E-07 53.8 2.4 21 219-239 1-21 (129)
343 cd03229 ABC_Class3 This class 94.8 0.1 2.2E-06 51.8 7.9 121 216-339 26-165 (178)
344 PF00560 LRR_1: Leucine Rich R 94.8 0.014 3.1E-07 35.1 1.1 19 627-646 2-20 (22)
345 PRK06547 hypothetical protein; 94.8 0.037 8.1E-07 54.2 4.6 26 214-239 13-38 (172)
346 PRK05022 anaerobic nitric oxid 94.8 0.11 2.5E-06 60.8 9.4 131 179-335 188-332 (509)
347 cd02019 NK Nucleoside/nucleoti 94.7 0.02 4.2E-07 46.5 2.2 21 218-238 1-21 (69)
348 COG0563 Adk Adenylate kinase a 94.7 0.042 9E-07 54.1 4.8 22 218-239 2-23 (178)
349 KOG0733 Nuclear AAA ATPase (VC 94.7 0.2 4.3E-06 56.8 10.4 158 215-394 544-717 (802)
350 PRK04328 hypothetical protein; 94.7 0.12 2.7E-06 54.2 8.7 41 214-256 21-61 (249)
351 PRK07276 DNA polymerase III su 94.7 0.96 2.1E-05 48.2 15.2 71 293-365 102-173 (290)
352 COG0714 MoxR-like ATPases [Gen 94.7 0.063 1.4E-06 59.2 6.7 112 179-321 25-138 (329)
353 PRK05480 uridine/cytidine kina 94.7 0.026 5.6E-07 57.8 3.4 25 214-238 4-28 (209)
354 cd01121 Sms Sms (bacterial rad 94.6 0.2 4.3E-06 55.6 10.4 82 215-304 81-167 (372)
355 PRK05917 DNA polymerase III su 94.6 0.84 1.8E-05 48.4 14.4 102 215-335 18-135 (290)
356 TIGR00554 panK_bact pantothena 94.6 0.097 2.1E-06 55.7 7.6 80 214-295 60-141 (290)
357 PRK06002 fliI flagellum-specif 94.6 0.16 3.5E-06 57.1 9.5 87 215-304 164-263 (450)
358 cd03246 ABCC_Protease_Secretio 94.6 0.16 3.5E-06 50.1 8.7 116 217-339 29-160 (173)
359 TIGR02329 propionate_PrpR prop 94.5 0.22 4.9E-06 57.9 10.9 132 179-335 213-358 (526)
360 PRK06731 flhF flagellar biosyn 94.5 0.35 7.5E-06 51.0 11.3 103 215-319 74-180 (270)
361 PF13671 AAA_33: AAA domain; P 94.5 0.027 6E-07 53.5 2.9 21 218-238 1-21 (143)
362 cd03282 ABC_MSH4_euk MutS4 hom 94.5 0.092 2E-06 53.1 6.8 121 216-343 29-159 (204)
363 COG1126 GlnQ ABC-type polar am 94.5 0.34 7.3E-06 48.0 10.2 124 216-342 28-203 (240)
364 KOG2035 Replication factor C, 94.5 0.36 7.9E-06 49.4 10.7 209 179-424 14-261 (351)
365 PF07726 AAA_3: ATPase family 94.5 0.022 4.7E-07 51.7 1.9 28 219-248 2-29 (131)
366 cd02027 APSK Adenosine 5'-phos 94.4 0.087 1.9E-06 50.5 6.3 21 218-238 1-21 (149)
367 TIGR03878 thermo_KaiC_2 KaiC d 94.4 0.19 4.1E-06 53.1 9.4 41 214-256 34-74 (259)
368 cd02028 UMPK_like Uridine mono 94.4 0.072 1.6E-06 52.8 5.9 21 218-238 1-21 (179)
369 KOG2739 Leucine-rich acidic nu 94.4 0.027 5.9E-07 57.1 2.7 85 622-709 40-126 (260)
370 COG4618 ArpD ABC-type protease 94.4 0.17 3.7E-06 56.3 8.9 48 22-69 178-228 (580)
371 TIGR00708 cobA cob(I)alamin ad 94.4 0.29 6.2E-06 47.5 9.5 118 216-336 5-141 (173)
372 PRK06762 hypothetical protein; 94.4 0.03 6.5E-07 54.9 3.0 22 217-238 3-24 (166)
373 PF00006 ATP-synt_ab: ATP synt 94.4 0.076 1.6E-06 53.9 5.9 86 215-304 14-114 (215)
374 TIGR00235 udk uridine kinase. 94.3 0.033 7.2E-07 56.8 3.3 25 214-238 4-28 (207)
375 TIGR02655 circ_KaiC circadian 94.3 0.25 5.3E-06 57.5 10.8 50 214-267 261-310 (484)
376 cd02029 PRK_like Phosphoribulo 94.3 0.23 5E-06 51.5 9.2 76 218-295 1-84 (277)
377 COG4088 Predicted nucleotide k 94.3 0.45 9.7E-06 46.6 10.5 22 217-238 2-23 (261)
378 PF12775 AAA_7: P-loop contain 94.3 0.028 6E-07 59.7 2.8 22 217-238 34-55 (272)
379 KOG1532 GTPase XAB1, interacts 94.3 0.16 3.4E-06 51.7 7.8 62 214-275 17-87 (366)
380 PRK14721 flhF flagellar biosyn 94.3 0.2 4.4E-06 56.1 9.6 88 215-304 190-278 (420)
381 KOG1051 Chaperone HSP104 and r 94.3 0.33 7.2E-06 58.8 11.9 124 179-322 563-687 (898)
382 cd01135 V_A-ATPase_B V/A-type 94.3 0.15 3.2E-06 53.4 7.8 90 215-304 68-175 (276)
383 KOG0730 AAA+-type ATPase [Post 94.2 0.27 5.8E-06 56.5 10.2 167 179-369 435-617 (693)
384 TIGR00150 HI0065_YjeE ATPase, 94.2 0.06 1.3E-06 49.8 4.3 24 216-239 22-45 (133)
385 KOG0744 AAA+-type ATPase [Post 94.2 0.13 2.7E-06 53.7 6.9 78 217-304 178-259 (423)
386 PRK10463 hydrogenase nickel in 94.2 0.17 3.8E-06 53.4 8.2 26 213-238 101-126 (290)
387 COG0467 RAD55 RecA-superfamily 94.2 0.13 2.7E-06 54.7 7.5 52 214-269 21-72 (260)
388 PF03308 ArgK: ArgK protein; 94.2 0.073 1.6E-06 54.5 5.2 50 214-263 27-76 (266)
389 COG1703 ArgK Putative periplas 94.1 0.065 1.4E-06 55.6 4.8 55 214-268 49-103 (323)
390 COG1102 Cmk Cytidylate kinase 94.1 0.094 2E-06 49.1 5.4 44 218-274 2-45 (179)
391 COG2842 Uncharacterized ATPase 94.1 0.31 6.7E-06 50.8 9.7 99 217-323 95-193 (297)
392 PTZ00494 tuzin-like protein; P 94.1 1.4 3.1E-05 48.5 14.9 166 179-367 372-544 (664)
393 COG1223 Predicted ATPase (AAA+ 94.1 0.52 1.1E-05 47.7 10.8 179 179-394 122-318 (368)
394 PF00154 RecA: recA bacterial 94.1 0.081 1.8E-06 56.8 5.7 84 214-304 51-140 (322)
395 PRK14723 flhF flagellar biosyn 94.1 0.22 4.8E-06 59.7 9.8 88 216-305 185-273 (767)
396 cd03215 ABC_Carb_Monos_II This 94.1 0.24 5.1E-06 49.4 8.8 24 216-239 26-49 (182)
397 PRK05973 replicative DNA helic 94.0 0.23 5E-06 51.1 8.7 49 215-267 63-111 (237)
398 TIGR02858 spore_III_AA stage I 94.0 0.29 6.2E-06 51.7 9.6 113 215-340 110-234 (270)
399 TIGR01360 aden_kin_iso1 adenyl 94.0 0.042 9.2E-07 55.1 3.3 24 215-238 2-25 (188)
400 TIGR01425 SRP54_euk signal rec 94.0 0.22 4.8E-06 55.8 9.1 25 214-238 98-122 (429)
401 COG0464 SpoVK ATPases of the A 94.0 0.49 1.1E-05 55.5 12.5 136 214-369 274-425 (494)
402 PRK06995 flhF flagellar biosyn 94.0 0.21 4.6E-06 56.9 9.0 88 216-305 256-344 (484)
403 TIGR03498 FliI_clade3 flagella 93.9 0.21 4.5E-06 56.0 8.7 88 215-305 139-240 (418)
404 PRK13540 cytochrome c biogenes 93.9 0.22 4.8E-06 50.5 8.3 24 216-239 27-50 (200)
405 KOG3864 Uncharacterized conser 93.9 0.0079 1.7E-07 58.3 -2.1 68 882-952 122-190 (221)
406 COG0396 sufC Cysteine desulfur 93.9 0.6 1.3E-05 46.8 10.7 57 288-344 155-213 (251)
407 PRK15424 propionate catabolism 93.9 0.38 8.3E-06 56.0 11.1 46 179-239 220-265 (538)
408 COG4240 Predicted kinase [Gene 93.9 0.21 4.5E-06 49.4 7.5 84 213-297 47-135 (300)
409 COG1120 FepC ABC-type cobalami 93.9 0.32 7E-06 50.4 9.4 57 287-343 148-207 (258)
410 PRK03839 putative kinase; Prov 93.8 0.04 8.6E-07 54.9 2.7 21 218-238 2-22 (180)
411 TIGR01069 mutS2 MutS2 family p 93.8 0.057 1.2E-06 65.9 4.4 24 215-238 321-344 (771)
412 PF06745 KaiC: KaiC; InterPro 93.8 0.13 2.8E-06 53.3 6.6 43 214-257 17-59 (226)
413 PF00560 LRR_1: Leucine Rich R 93.8 0.027 5.9E-07 33.9 0.8 21 650-671 1-21 (22)
414 PRK10923 glnG nitrogen regulat 93.8 0.25 5.5E-06 57.6 9.6 134 179-335 139-283 (469)
415 cd03240 ABC_Rad50 The catalyti 93.8 0.39 8.4E-06 48.8 9.8 53 288-340 132-188 (204)
416 PRK03846 adenylylsulfate kinas 93.7 0.14 3E-06 51.8 6.4 25 214-238 22-46 (198)
417 TIGR03575 selen_PSTK_euk L-ser 93.7 0.18 3.8E-06 55.0 7.5 21 219-239 2-22 (340)
418 cd00267 ABC_ATPase ABC (ATP-bi 93.7 0.22 4.8E-06 48.2 7.6 119 217-341 26-146 (157)
419 PRK10820 DNA-binding transcrip 93.7 0.18 4E-06 59.1 8.3 133 179-335 205-349 (520)
420 TIGR03574 selen_PSTK L-seryl-t 93.7 0.28 6E-06 51.7 8.9 21 218-238 1-21 (249)
421 TIGR03522 GldA_ABC_ATP gliding 93.7 0.52 1.1E-05 51.2 11.2 53 288-340 144-197 (301)
422 TIGR00390 hslU ATP-dependent p 93.7 0.15 3.3E-06 56.3 6.9 88 179-271 13-104 (441)
423 PRK04040 adenylate kinase; Pro 93.7 0.048 1E-06 54.4 2.9 22 217-238 3-24 (188)
424 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 93.7 0.42 9E-06 49.4 10.0 23 217-239 49-71 (224)
425 PRK12678 transcription termina 93.7 0.078 1.7E-06 60.3 4.7 85 215-304 415-512 (672)
426 PRK09544 znuC high-affinity zi 93.6 0.39 8.4E-06 50.6 9.8 24 216-239 30-53 (251)
427 PF00910 RNA_helicase: RNA hel 93.6 0.035 7.6E-07 49.7 1.7 21 219-239 1-21 (107)
428 TIGR01818 ntrC nitrogen regula 93.6 0.36 7.8E-06 56.3 10.6 134 179-335 135-279 (463)
429 cd00984 DnaB_C DnaB helicase C 93.6 0.37 8.1E-06 50.5 9.8 55 215-272 12-66 (242)
430 PRK10416 signal recognition pa 93.6 0.38 8.1E-06 52.3 9.8 26 214-239 112-137 (318)
431 cd03217 ABC_FeS_Assembly ABC-t 93.6 0.28 6.2E-06 49.6 8.5 24 216-239 26-49 (200)
432 PRK00625 shikimate kinase; Pro 93.6 0.045 9.7E-07 53.7 2.5 21 218-238 2-22 (173)
433 KOG0736 Peroxisome assembly fa 93.6 0.37 8.1E-06 56.2 10.0 103 179-306 673-775 (953)
434 PF13481 AAA_25: AAA domain; P 93.5 0.28 6.1E-06 49.3 8.4 41 217-257 33-81 (193)
435 PRK09519 recA DNA recombinatio 93.5 0.34 7.5E-06 58.3 10.1 85 214-305 58-148 (790)
436 COG4133 CcmA ABC-type transpor 93.5 0.9 2E-05 44.0 10.9 22 217-238 29-50 (209)
437 PTZ00185 ATPase alpha subunit; 93.5 0.26 5.6E-06 55.6 8.4 92 214-305 187-299 (574)
438 cd03369 ABCC_NFT1 Domain 2 of 93.5 0.94 2E-05 46.1 12.2 23 216-238 34-56 (207)
439 COG1428 Deoxynucleoside kinase 93.5 0.047 1E-06 53.8 2.3 24 216-239 4-27 (216)
440 PTZ00088 adenylate kinase 1; P 93.4 0.07 1.5E-06 54.9 3.7 21 218-238 8-28 (229)
441 cd03244 ABCC_MRP_domain2 Domai 93.4 0.65 1.4E-05 47.9 11.1 23 216-238 30-52 (221)
442 KOG0728 26S proteasome regulat 93.4 3.4 7.4E-05 41.6 15.0 162 178-367 146-331 (404)
443 PF03205 MobB: Molybdopterin g 93.4 0.086 1.9E-06 49.7 4.0 39 217-256 1-39 (140)
444 KOG3347 Predicted nucleotide k 93.4 0.28 6.1E-06 45.3 6.9 72 215-296 6-77 (176)
445 TIGR00382 clpX endopeptidase C 93.4 0.69 1.5E-05 51.9 11.6 57 179-238 78-138 (413)
446 COG2019 AdkA Archaeal adenylat 93.4 0.069 1.5E-06 50.2 3.1 23 216-238 4-26 (189)
447 PRK12597 F0F1 ATP synthase sub 93.4 0.35 7.6E-06 54.8 9.4 89 215-304 142-246 (461)
448 TIGR01420 pilT_fam pilus retra 93.3 0.17 3.7E-06 55.9 6.9 112 216-338 122-233 (343)
449 KOG2170 ATPase of the AAA+ sup 93.3 0.78 1.7E-05 47.8 10.8 115 179-320 83-203 (344)
450 TIGR00416 sms DNA repair prote 93.3 0.5 1.1E-05 54.2 10.7 41 214-256 92-132 (454)
451 PRK07594 type III secretion sy 93.3 0.34 7.3E-06 54.5 9.0 86 215-304 154-254 (433)
452 PRK09280 F0F1 ATP synthase sub 93.3 0.35 7.6E-06 54.6 9.2 89 215-304 143-247 (463)
453 PRK11823 DNA repair protein Ra 93.3 0.38 8.2E-06 55.1 9.7 82 215-304 79-165 (446)
454 cd02023 UMPK Uridine monophosp 93.3 0.047 1E-06 55.3 2.2 21 218-238 1-21 (198)
455 PRK05922 type III secretion sy 93.3 0.48 1E-05 53.3 10.1 85 216-304 157-256 (434)
456 cd01132 F1_ATPase_alpha F1 ATP 93.3 0.16 3.6E-06 53.0 6.1 86 215-304 68-170 (274)
457 PRK08927 fliI flagellum-specif 93.3 0.37 7.9E-06 54.2 9.2 86 215-304 157-257 (442)
458 cd01136 ATPase_flagellum-secre 93.2 0.45 9.8E-06 51.5 9.6 86 215-304 68-168 (326)
459 PRK00131 aroK shikimate kinase 93.2 0.061 1.3E-06 53.1 2.9 23 216-238 4-26 (175)
460 PRK08149 ATP synthase SpaL; Va 93.2 0.24 5.2E-06 55.5 7.7 86 215-304 150-250 (428)
461 TIGR02322 phosphon_PhnN phosph 93.1 0.062 1.4E-06 53.4 2.8 22 217-238 2-23 (179)
462 PRK10875 recD exonuclease V su 93.1 0.28 6.1E-06 58.1 8.5 115 217-336 168-303 (615)
463 COG1066 Sms Predicted ATP-depe 93.1 0.2 4.4E-06 54.3 6.6 82 215-305 92-178 (456)
464 cd02024 NRK1 Nicotinamide ribo 93.1 0.053 1.1E-06 53.7 2.1 21 218-238 1-21 (187)
465 TIGR01359 UMP_CMP_kin_fam UMP- 93.1 0.052 1.1E-06 54.2 2.1 21 218-238 1-21 (183)
466 PRK08972 fliI flagellum-specif 93.1 0.25 5.5E-06 55.2 7.6 86 215-304 161-261 (444)
467 KOG0731 AAA+-type ATPase conta 93.1 1.4 2.9E-05 52.6 13.7 187 179-398 312-521 (774)
468 PRK10751 molybdopterin-guanine 93.1 0.099 2.1E-06 50.9 3.9 25 215-239 5-29 (173)
469 PRK05986 cob(I)alamin adenolsy 93.1 0.42 9.1E-06 47.1 8.2 120 215-336 21-159 (191)
470 TIGR03740 galliderm_ABC gallid 93.0 0.46 9.9E-06 49.1 9.1 53 288-340 135-189 (223)
471 PF08298 AAA_PrkA: PrkA AAA do 93.0 0.1 2.2E-06 56.1 4.3 49 179-238 62-110 (358)
472 PRK06793 fliI flagellum-specif 93.0 0.22 4.7E-06 56.0 7.0 88 215-305 155-256 (432)
473 cd03232 ABC_PDR_domain2 The pl 93.0 0.42 9.1E-06 48.0 8.6 23 216-238 33-55 (192)
474 KOG2123 Uncharacterized conser 93.0 0.0088 1.9E-07 60.6 -3.5 63 621-686 37-101 (388)
475 PRK00279 adk adenylate kinase; 93.0 0.45 9.7E-06 48.8 8.9 21 218-238 2-22 (215)
476 cd02021 GntK Gluconate kinase 92.9 0.061 1.3E-06 51.6 2.3 21 218-238 1-21 (150)
477 PF06309 Torsin: Torsin; Inte 92.9 0.14 3E-06 46.4 4.3 51 179-239 26-76 (127)
478 cd00227 CPT Chloramphenicol (C 92.9 0.067 1.4E-06 52.9 2.6 22 217-238 3-24 (175)
479 KOG0743 AAA+-type ATPase [Post 92.9 3.1 6.7E-05 46.2 15.2 155 217-408 236-416 (457)
480 COG3640 CooC CO dehydrogenase 92.9 0.15 3.3E-06 50.9 4.9 43 218-261 2-44 (255)
481 COG0529 CysC Adenylylsulfate k 92.9 0.092 2E-06 50.0 3.2 25 214-238 21-45 (197)
482 PRK11388 DNA-binding transcrip 92.9 0.35 7.5E-06 58.8 9.2 130 179-334 326-466 (638)
483 PRK09099 type III secretion sy 92.9 0.26 5.6E-06 55.6 7.4 87 215-304 162-262 (441)
484 KOG0729 26S proteasome regulat 92.9 0.075 1.6E-06 53.4 2.8 62 179-246 178-239 (435)
485 PF03796 DnaB_C: DnaB-like hel 92.9 0.39 8.5E-06 50.9 8.5 56 216-274 19-74 (259)
486 COG1936 Predicted nucleotide k 92.8 0.077 1.7E-06 50.5 2.6 20 218-237 2-21 (180)
487 PHA02774 E1; Provisional 92.8 0.38 8.3E-06 55.2 8.6 38 214-255 432-469 (613)
488 PF00625 Guanylate_kin: Guanyl 92.8 0.092 2E-06 52.4 3.4 36 216-253 2-37 (183)
489 PRK00409 recombination and DNA 92.8 0.1 2.2E-06 63.9 4.4 176 215-407 326-512 (782)
490 COG0003 ArsA Predicted ATPase 92.8 0.16 3.5E-06 54.7 5.4 49 216-266 2-50 (322)
491 cd03213 ABCG_EPDR ABCG transpo 92.7 0.76 1.6E-05 46.2 10.0 24 216-239 35-58 (194)
492 COG0541 Ffh Signal recognition 92.7 2.4 5.2E-05 46.8 14.1 58 214-274 98-157 (451)
493 PRK06217 hypothetical protein; 92.7 0.071 1.5E-06 53.2 2.4 22 218-239 3-24 (183)
494 PF13245 AAA_19: Part of AAA d 92.7 0.17 3.8E-06 41.8 4.3 23 216-238 10-33 (76)
495 cd03243 ABC_MutS_homologs The 92.6 0.17 3.8E-06 51.3 5.2 22 217-238 30-51 (202)
496 TIGR03263 guanyl_kin guanylate 92.6 0.086 1.9E-06 52.4 2.9 22 217-238 2-23 (180)
497 PF12061 DUF3542: Protein of u 92.6 0.23 4.9E-06 51.4 5.8 77 4-84 296-373 (402)
498 KOG0739 AAA+-type ATPase [Post 92.6 2.9 6.4E-05 43.4 13.5 101 179-305 134-235 (439)
499 TIGR00455 apsK adenylylsulfate 92.6 0.68 1.5E-05 46.2 9.3 25 214-238 16-40 (184)
500 cd03280 ABC_MutS2 MutS2 homolo 92.5 0.2 4.3E-06 50.7 5.5 22 216-237 28-49 (200)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-84 Score=774.65 Aligned_cols=821 Identities=26% Similarity=0.386 Sum_probs=597.2
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHhhhchhhHHHH
Q 001995 3 EAIVSTILEQLALILVEQTAAGVRLIAGAEEEVENLHRRFHLIKAVVEDAEKRQMKETAVRVWLDDLKHASYDMEDVLDE 82 (985)
Q Consensus 3 ~~~~~~~~~kl~~~~~~~~~~e~~~~~~~~~~~~~L~~~l~~i~~~l~~a~~~~~~~~~~~~wl~~l~~~~yd~ed~ld~ 82 (985)
+++++..++|+.. ++.+++....+.++.+..|++.|..++++++||+.++.....+..|.+.+++++|++||.++.
T Consensus 2 ~~~~s~~~~~~~~----~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~ 77 (889)
T KOG4658|consen 2 GACVSFGVEKLDQ----LLNRESECLDGKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWL 77 (889)
T ss_pred CeEEEEehhhHHH----HHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777 888899999999999999999999999999999999888899999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCCC-C--CCcccccCcccccccCCCCchhhhhhHHHHHHHHHHHHHHHHHhhhhcCccccccC
Q 001995 83 WNTAIRKLQMKRSSGDANVS-Q--PMRTVRPSFIIPSYWFSPGQLVQRHNIATKIKNVDKKLDNIVRDINAYGFIISREQ 159 (985)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~l~~i~~~~~~~~~~~~~~~ 159 (985)
|.......+... . .. + ..+++ |++ .++++.+..+..+.+++..+.+....++.......
T Consensus 78 ~~v~~~~~~~~~---~--l~~~~~~~~~~---------c~~----~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~ 139 (889)
T KOG4658|consen 78 FLVEEIERKAND---L--LSTRSVERQRL---------CLC----GFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEV 139 (889)
T ss_pred HHHHHHHHHHhH---H--hhhhHHHHHHH---------hhh----hhHhHhhhhhHhHHHHHHHHHHHHHHhccccceec
Confidence 999887654332 0 00 0 00111 111 45667777777777777777777777664332111
Q ss_pred CC--CCcCCCCCcccccccCCceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHh
Q 001995 160 GS--GKVASRPSTTSFLDESYEIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIF 237 (985)
Q Consensus 160 ~~--~~~~~~~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~ 237 (985)
.. ......+++.+..++. . ||.+..++++++.|...+ ..+++|+||||+||||||+.++
T Consensus 140 ~~~~~~~~~~~e~~~~~~~~-~-VG~e~~~~kl~~~L~~d~-----------------~~iv~i~GMGGvGKTTL~~qi~ 200 (889)
T KOG4658|consen 140 VGESLDPREKVETRPIQSES-D-VGLETMLEKLWNRLMEDD-----------------VGIVGIYGMGGVGKTTLARQIF 200 (889)
T ss_pred ccccccchhhcccCCCCccc-c-ccHHHHHHHHHHHhccCC-----------------CCEEEEECCCcccHHHHHHHHh
Confidence 11 1112234555555555 5 999999999999998433 3899999999999999999999
Q ss_pred cchh-hhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCC--CHHHHHHHHHHHhcCceEEEEecCCCCCCcccHHH
Q 001995 238 NDNE-VRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAV--ESETVLKQLRESIEGKKFFLVLDDVWTEEPQNWEQ 314 (985)
Q Consensus 238 ~~~~-~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~--~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~ 314 (985)
|+.. ++.+|+.++||+||+.++...++.+|++.++....... ..++++..+.+.|++|||||||||||+.. .|+.
T Consensus 201 N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~--dw~~ 278 (889)
T KOG4658|consen 201 NKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEV--DWDK 278 (889)
T ss_pred cccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccc--cHHh
Confidence 9977 99999999999999999999999999999986443332 34688899999999999999999999864 5999
Q ss_pred HHhhhcCCCCCcEEEEEcCchhhHHh-hcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCC
Q 001995 315 LLGCLRCGSKESRILVTTRNEKVAIA-IGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKG 393 (985)
Q Consensus 315 l~~~l~~~~~gs~ilvTtR~~~v~~~-~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~I~~~~~G 393 (985)
+..++|...+||||++|||++.|+.. ++.. ..++++.|+.+|||+||.+.++.... ..++.+.++|++|+++|+|
T Consensus 279 I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~--~~~~v~~L~~~eaW~LF~~~v~~~~~--~~~~~i~~lak~v~~kC~G 354 (889)
T KOG4658|consen 279 IGVPFPSRENGSKVVLTTRSEEVCGRAMGVD--YPIEVECLTPEEAWDLFQKKVGPNTL--GSHPDIEELAKEVAEKCGG 354 (889)
T ss_pred cCCCCCCccCCeEEEEEeccHhhhhccccCC--ccccccccCccccHHHHHHhhccccc--cccccHHHHHHHHHHHhCC
Confidence 99999998999999999999999998 6665 79999999999999999999998754 3445589999999999999
Q ss_pred ChhHHHHHHhhhhcCCChHHHHHHHHhhhhhh----hccccccchhhhcccCCCCcchhHHHhhhccCCCCcccChhHHH
Q 001995 394 LPLAVKTLGSLLRFKGKIEEWQRVLENELWEL----EELDEGLLGPLLLSYLDLPPPLKKCFSYCAIFPKDSRLEKDKLI 469 (985)
Q Consensus 394 lPLai~~~~~~L~~~~~~~~w~~~~~~~~~~~----~~~~~~i~~~l~~sy~~L~~~~k~cfl~~a~fp~~~~i~~~~Li 469 (985)
+|||++++|+.|+.+.+..+|+++.+...+.. ....+.+++++++||+.||+++|.||+|||+||+||.|+++.||
T Consensus 355 LPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li 434 (889)
T KOG4658|consen 355 LPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLI 434 (889)
T ss_pred hHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHH
Confidence 99999999999999999999999998765542 23356799999999999999999999999999999999999999
Q ss_pred HHHhhcCcccccC-ccch-hhHhHHHHHHHhhccccccccCCCCCCeEEEEecchHHHHHHHhhcc-----cccceeccC
Q 001995 470 RLWMAQDYLKVKG-REDM-VVGEGYFENLAMRSLFQDFERSEHDGGKIISCQMHDMVHDFSQFLTK-----TECSALDVN 542 (985)
Q Consensus 470 ~~Wiaeg~i~~~~-~~~~-~~~~~~~~~L~~r~ll~~~~~~~~~~~~~~~~~mHdlv~d~~~~~~~-----~e~~~~~~~ 542 (985)
.+|+||||+.+.. +..+ +.|++|+++|++++|++..... +. ...|+|||+||++|.+++. .+.......
T Consensus 435 ~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~---~~-~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~ 510 (889)
T KOG4658|consen 435 EYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDE---GR-KETVKMHDVVREMALWIASDFGKQEENQIVSDG 510 (889)
T ss_pred HHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccc---cc-eeEEEeeHHHHHHHHHHhccccccccceEEECC
Confidence 9999999998844 4555 9999999999999999987643 22 6779999999999999998 554433332
Q ss_pred -cc---cccCCCCCeEEEEEEcCCCCCccCCCccccCCCCceEEEccCcCCcchhhhHHHhhccCCcceeecCC---CCC
Q 001995 543 -KS---RLQLPSWKARHLMITGETRSEMVPFPSMVYDETKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL---PVG 615 (985)
Q Consensus 543 -~~---~~~~~~~~~r~l~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~---~~~ 615 (985)
+. .....+..+|++++.++....+ ..-..+++|++|.+.++.. ........+|..++.||||||+ ...
T Consensus 511 ~~~~~~~~~~~~~~~rr~s~~~~~~~~~----~~~~~~~~L~tLll~~n~~-~l~~is~~ff~~m~~LrVLDLs~~~~l~ 585 (889)
T KOG4658|consen 511 VGLSEIPQVKSWNSVRRMSLMNNKIEHI----AGSSENPKLRTLLLQRNSD-WLLEISGEFFRSLPLLRVLDLSGNSSLS 585 (889)
T ss_pred cCccccccccchhheeEEEEeccchhhc----cCCCCCCccceEEEeecch-hhhhcCHHHHhhCcceEEEECCCCCccC
Confidence 11 1122345789999998876322 2234566899999998852 1233456678999999999999 678
Q ss_pred CCCcccccCCCCCeEecCCCCCccccchhhcCCCCCcEeeccCcccccccchhhhhccccceeecccccccccccCCCcC
Q 001995 616 QIPKGIKKLIHLRYLALGENPWIKELPEALCELCNLQTLDVSLCHYLKRLPERIGQLINLRHLMNSKEEWSRLSYMPRGM 695 (985)
Q Consensus 616 ~lp~~i~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~l~~lp~~i 695 (985)
++|.+|++|.|||||+|+++. +..+|.++.+|+.|.+||+..+..+..+|..+..|.+||+|.+.... ...-...+
T Consensus 586 ~LP~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~---~~~~~~~l 661 (889)
T KOG4658|consen 586 KLPSSIGELVHLRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA---LSNDKLLL 661 (889)
T ss_pred cCChHHhhhhhhhcccccCCC-ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc---cccchhhH
Confidence 899999999999999999999 99999999999999999999988777777666779999999987322 11111123
Q ss_pred CCCCCCCccCceEecCCCcccccCCchhhhccccCcceeeecccccccCCCCcchhhhcccccccccccEEEEEcCCCCc
Q 001995 696 ERLTGLRTLGAFVASGGKSSKACSSLKSLNKLKHLEGSLTLRGLGNERDLGDDNDDEKVDLKSKMKLVDLHLRFDSTTKT 775 (985)
Q Consensus 696 ~~l~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 775 (985)
+.+.+|++|.......... .....+..+..|..+...+.+ ..+
T Consensus 662 ~el~~Le~L~~ls~~~~s~-~~~e~l~~~~~L~~~~~~l~~-------------------------------~~~----- 704 (889)
T KOG4658|consen 662 KELENLEHLENLSITISSV-LLLEDLLGMTRLRSLLQSLSI-------------------------------EGC----- 704 (889)
T ss_pred Hhhhcccchhhheeecchh-HhHhhhhhhHHHHHHhHhhhh-------------------------------ccc-----
Confidence 3333343333332211110 000011111222111101111 000
Q ss_pred chhHhhhcCCCCCCCCCeEEEeeccCCCCCCCChhhh-----c-cccccEEeEeccCCCCcCCCCCCCCccceeeccCCC
Q 001995 776 KDHRVVLECLQPPSSLEKLGIYGYAGDTISPTSDWML-----S-LAKLRVLTLRFCNECECLPPLGKLPCLETLVLEGMS 849 (985)
Q Consensus 776 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~-----~-l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~ 849 (985)
........+..+.+|+.|.+.+|.+.... ..|.. . ++++.++.+.+|.....+.+.-..|+|+.|.+..|.
T Consensus 705 -~~~~~~~~~~~l~~L~~L~i~~~~~~e~~--~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~ 781 (889)
T KOG4658|consen 705 -SKRTLISSLGSLGNLEELSILDCGISEIV--IEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCR 781 (889)
T ss_pred -ccceeecccccccCcceEEEEcCCCchhh--cccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEeccc
Confidence 01122233444566666666666654321 11211 1 456666666666666665555566777777777777
Q ss_pred CceEeCCcccCCchhhhhhhhhhhcccccccCCCCCcccee-eccccccccccccccccCcccccccccceeecccccCC
Q 001995 850 SVKRLGNGFLGIAEDHQARADQAETASSIIRDTAFPRLETL-EFLDMEKWEEWDDCEIAGGKTIMPRLRHLSICWSPELK 928 (985)
Q Consensus 850 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fp~L~~L-~l~~~~~L~~~~~~~~~~~~~~lp~L~~L~i~~c~~L~ 928 (985)
.++.+....-.... ... ....|+++..+ .+.+.+.+.++.. ..-.+++|+.+.+..||++.
T Consensus 782 ~~e~~i~~~k~~~~--------l~~-----~i~~f~~~~~l~~~~~l~~l~~i~~-----~~l~~~~l~~~~ve~~p~l~ 843 (889)
T KOG4658|consen 782 LLEDIIPKLKALLE--------LKE-----LILPFNKLEGLRMLCSLGGLPQLYW-----LPLSFLKLEELIVEECPKLG 843 (889)
T ss_pred ccccCCCHHHHhhh--------ccc-----EEecccccccceeeecCCCCceeEe-----cccCccchhheehhcCcccc
Confidence 66554321111000 000 01346666666 4666555555544 22256778888888888877
Q ss_pred CCCCCCCCCCCcCeEEecCc
Q 001995 929 ALPDYILGSTSLDKLLIYYS 948 (985)
Q Consensus 929 ~lp~~~~~l~~L~~L~i~~c 948 (985)
.+| .+.++.|.+|
T Consensus 844 ~~P-------~~~~~~i~~~ 856 (889)
T KOG4658|consen 844 KLP-------LLSTLTIVGC 856 (889)
T ss_pred cCc-------cccccceecc
Confidence 766 3555666666
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=5e-62 Score=615.54 Aligned_cols=664 Identities=22% Similarity=0.262 Sum_probs=431.7
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEe---C
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCV---S 255 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~---~ 255 (985)
++|||++.++++..+|.... .++++|+|+||||+||||||+++|+ ++..+|+..+|+.. +
T Consensus 185 ~~vG~~~~l~~l~~lL~l~~---------------~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~ 247 (1153)
T PLN03210 185 DFVGIEDHIAKMSSLLHLES---------------EEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFIS 247 (1153)
T ss_pred cccchHHHHHHHHHHHcccc---------------CceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccc
Confidence 79999999999999886332 5689999999999999999999999 78889998887742 1
Q ss_pred CC-----------CC-HHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCCCcccHHHHHhhhcCCC
Q 001995 256 EP-----------FD-DIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTEEPQNWEQLLGCLRCGS 323 (985)
Q Consensus 256 ~~-----------~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~ 323 (985)
.. +. ...+..+++.++........ .. ...+++.++++|+||||||||+ ...|+.+.....+.+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~--~~-~~~~~~~L~~krvLLVLDdv~~--~~~l~~L~~~~~~~~ 322 (1153)
T PLN03210 248 KSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKI--YH-LGAMEERLKHRKVLIFIDDLDD--QDVLDALAGQTQWFG 322 (1153)
T ss_pred cchhhcccccccccchhHHHHHHHHHHHhCCCCccc--CC-HHHHHHHHhCCeEEEEEeCCCC--HHHHHHHHhhCccCC
Confidence 11 01 12344555555533221111 01 1456788899999999999976 457888887777778
Q ss_pred CCcEEEEEcCchhhHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHHHHHh
Q 001995 324 KESRILVTTRNEKVAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVKTLGS 403 (985)
Q Consensus 324 ~gs~ilvTtR~~~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~~~ 403 (985)
+||+||||||++.++..++.. .+|+++.|++++||+||+++||... .+++++.+++++|+++|+|+||||+++|+
T Consensus 323 ~GsrIIiTTrd~~vl~~~~~~--~~~~v~~l~~~ea~~LF~~~Af~~~---~~~~~~~~l~~~iv~~c~GLPLAl~vlgs 397 (1153)
T PLN03210 323 SGSRIIVITKDKHFLRAHGID--HIYEVCLPSNELALEMFCRSAFKKN---SPPDGFMELASEVALRAGNLPLGLNVLGS 397 (1153)
T ss_pred CCcEEEEEeCcHHHHHhcCCC--eEEEecCCCHHHHHHHHHHHhcCCC---CCcHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 999999999999998877666 6899999999999999999999764 34567889999999999999999999999
Q ss_pred hhhcCCChHHHHHHHHhhhhhhhccccccchhhhcccCCCCc-chhHHHhhhccCCCCcccChhHHHHHHhhcCcccccC
Q 001995 404 LLRFKGKIEEWQRVLENELWELEELDEGLLGPLLLSYLDLPP-PLKKCFSYCAIFPKDSRLEKDKLIRLWMAQDYLKVKG 482 (985)
Q Consensus 404 ~L~~~~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~-~~k~cfl~~a~fp~~~~i~~~~Li~~Wiaeg~i~~~~ 482 (985)
+|+.+ +..+|..++++.... .+.++.++|++||++|++ ..|.||+++|+||.+..++ .+..|++.+.+...
T Consensus 398 ~L~~k-~~~~W~~~l~~L~~~---~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~~- 469 (1153)
T PLN03210 398 YLRGR-DKEDWMDMLPRLRNG---LDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDVN- 469 (1153)
T ss_pred HHcCC-CHHHHHHHHHHHHhC---ccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCch-
Confidence 99865 689999999875432 245699999999999987 5999999999999987554 47788887655322
Q ss_pred ccchhhHhHHHHHHHhhccccccccCCCCCCeEEEEecchHHHHHHHhhcccccceeccCcccc------------cCCC
Q 001995 483 REDMVVGEGYFENLAMRSLFQDFERSEHDGGKIISCQMHDMVHDFSQFLTKTECSALDVNKSRL------------QLPS 550 (985)
Q Consensus 483 ~~~~~~~~~~~~~L~~r~ll~~~~~~~~~~~~~~~~~mHdlv~d~~~~~~~~e~~~~~~~~~~~------------~~~~ 550 (985)
.-++.|++++|++... +. +.|||++|++++.++.++.. ....+.+. ....
T Consensus 470 --------~~l~~L~~ksLi~~~~-----~~----~~MHdLl~~~~r~i~~~~~~-~~~~r~~l~~~~di~~vl~~~~g~ 531 (1153)
T PLN03210 470 --------IGLKNLVDKSLIHVRE-----DI----VEMHSLLQEMGKEIVRAQSN-EPGEREFLVDAKDICDVLEDNTGT 531 (1153)
T ss_pred --------hChHHHHhcCCEEEcC-----Ce----EEhhhHHHHHHHHHHHhhcC-CCCcceeEeCHHHHHHHHHhCccc
Confidence 2288999999997642 22 78999999999999876531 11111110 1123
Q ss_pred CCeEEEEEEcCCCCCccCCCccccCCCCceEEEccCcCCc---chhhhHHHhhc-----------------------cCC
Q 001995 551 WKARHLMITGETRSEMVPFPSMVYDETKLRSLVLDQRLSF---KPRIALSKLFD-----------------------RLT 604 (985)
Q Consensus 551 ~~~r~l~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~---~~~~~~~~~~~-----------------------~l~ 604 (985)
..++.+++......+.......|..+++|+.|.+..+... .....++..|. .+.
T Consensus 532 ~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~ 611 (1153)
T PLN03210 532 KKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPE 611 (1153)
T ss_pred ceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCcc
Confidence 4567777665444332323445667777777776543210 00001111122 234
Q ss_pred cceeecCC--CCCCCCcccccCCCCCeEecCCCCCccccchhhcCCCCCcEeeccCcccccccchhhhhccccceeeccc
Q 001995 605 CLRSIDGL--PVGQIPKGIKKLIHLRYLALGENPWIKELPEALCELCNLQTLDVSLCHYLKRLPERIGQLINLRHLMNSK 682 (985)
Q Consensus 605 ~Lr~L~l~--~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~ 682 (985)
+|+.|++. .+..+|..+..+++|++|+|+++..+..+|. ++.+++|++|+|++|..+..+|..+++|++|++|+++
T Consensus 612 ~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~- 689 (1153)
T PLN03210 612 NLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMS- 689 (1153)
T ss_pred CCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCC-
Confidence 55555555 4455556666666666666666655666664 6666666666666666666666666666666666666
Q ss_pred ccccccccCCCcCCCCCCCCccCceEecCCCcccccCCchh-hhccccCcceeeecccccccCCCCcchhhhcccccccc
Q 001995 683 EEWSRLSYMPRGMERLTGLRTLGAFVASGGKSSKACSSLKS-LNKLKHLEGSLTLRGLGNERDLGDDNDDEKVDLKSKMK 761 (985)
Q Consensus 683 ~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~-L~~L~~L~~~L~i~~l~~~~~~~~~~~~~~~~l~~~~~ 761 (985)
+|..+..+|.++ ++++|+.|.+.++.... .+.. ..+|+ .|.+.+.. +..++ ....+++
T Consensus 690 -~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~------~~p~~~~nL~----~L~L~~n~-i~~lP--------~~~~l~~ 748 (1153)
T PLN03210 690 -RCENLEILPTGI-NLKSLYRLNLSGCSRLK------SFPDISTNIS----WLDLDETA-IEEFP--------SNLRLEN 748 (1153)
T ss_pred -CCCCcCccCCcC-CCCCCCEEeCCCCCCcc------ccccccCCcC----eeecCCCc-ccccc--------ccccccc
Confidence 555666666655 56666666654322111 0100 11222 22222110 11110 0113455
Q ss_pred cccEEEEEcCCCCcc--hhHhhhcCCCCCCCCCeEEEeeccCCCCCCCChhhhccccccEEeEeccCCCCcCCCCCCCCc
Q 001995 762 LVDLHLRFDSTTKTK--DHRVVLECLQPPSSLEKLGIYGYAGDTISPTSDWMLSLAKLRVLTLRFCNECECLPPLGKLPC 839 (985)
Q Consensus 762 L~~L~l~~~~~~~~~--~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~ 839 (985)
|+.|.+..+...... ...........+++|+.|++++|..... +|.++.++++|+.|+|++|..++.+|....+++
T Consensus 749 L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~--lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~s 826 (1153)
T PLN03210 749 LDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVE--LPSSIQNLHKLEHLEIENCINLETLPTGINLES 826 (1153)
T ss_pred cccccccccchhhccccccccchhhhhccccchheeCCCCCCccc--cChhhhCCCCCCEEECCCCCCcCeeCCCCCccc
Confidence 666665442200000 0000000112346899999998864332 288899999999999999988888887668999
Q ss_pred cceeeccCCCCceEeCCcccCCchhhhhhhhhhhcccccccCCCCCccceeeccccccccccccccccCcccccccccce
Q 001995 840 LETLVLEGMSSVKRLGNGFLGIAEDHQARADQAETASSIIRDTAFPRLETLEFLDMEKWEEWDDCEIAGGKTIMPRLRHL 919 (985)
Q Consensus 840 L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~lp~L~~L 919 (985)
|+.|+|++|+.+..+|.. .++|+.|+|.+ +.++.++. ....+++|+.|
T Consensus 827 L~~L~Ls~c~~L~~~p~~--------------------------~~nL~~L~Ls~-n~i~~iP~-----si~~l~~L~~L 874 (1153)
T PLN03210 827 LESLDLSGCSRLRTFPDI--------------------------STNISDLNLSR-TGIEEVPW-----WIEKFSNLSFL 874 (1153)
T ss_pred cCEEECCCCCcccccccc--------------------------ccccCEeECCC-CCCccChH-----HHhcCCCCCEE
Confidence 999999999887766542 23455555544 23333332 23345555555
Q ss_pred eecccccCCCCCCCCCCCCCcCeEEecCchhhh
Q 001995 920 SICWSPELKALPDYILGSTSLDKLLIYYSRHLN 952 (985)
Q Consensus 920 ~i~~c~~L~~lp~~~~~l~~L~~L~i~~c~~l~ 952 (985)
++.+|++|+.+|..+..+++|+.+++++|++|+
T Consensus 875 ~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~ 907 (1153)
T PLN03210 875 DMNGCNNLQRVSLNISKLKHLETVDFSDCGALT 907 (1153)
T ss_pred ECCCCCCcCccCcccccccCCCeeecCCCcccc
Confidence 555555555555545555555555555555543
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1.7e-42 Score=376.52 Aligned_cols=280 Identities=38% Similarity=0.646 Sum_probs=226.2
Q ss_pred chhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHH
Q 001995 183 RNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIR 262 (985)
Q Consensus 183 r~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 262 (985)
||.++++|.++|.... .+.++|+|+||||+||||||++++++..++.+|+.++|+.++...+...
T Consensus 1 re~~~~~l~~~L~~~~---------------~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~ 65 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS---------------NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQ 65 (287)
T ss_dssp -HHHHHHHHHHHHTTT---------------TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHH
T ss_pred CHHHHHHHHHHhhCCC---------------CCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccccc
Confidence 7899999999998543 5789999999999999999999999777999999999999999999999
Q ss_pred HHHHHHHHhcCCCC---CCCCHHHHHHHHHHHhcCceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEEEEEcCchhhHH
Q 001995 263 IAKAILESLKGSAT---NAVESETVLKQLRESIEGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRILVTTRNEKVAI 339 (985)
Q Consensus 263 ~~~~i~~~l~~~~~---~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~ 339 (985)
++..|+.+++.... ...+.+.....+.+.|+++++||||||||+. ..|+.+...++....|++||||||+..++.
T Consensus 66 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~kilvTTR~~~v~~ 143 (287)
T PF00931_consen 66 LLEQILRQLGEPDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDE--EDLEELREPLPSFSSGSKILVTTRDRSVAG 143 (287)
T ss_dssp HHHHHHHHHTCC-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SH--HHH-------HCHHSS-EEEEEESCGGGGT
T ss_pred ccccccccccccccccccccccccccccchhhhccccceeeeeeeccc--cccccccccccccccccccccccccccccc
Confidence 99999999987633 4567788999999999999999999999864 588888888887788999999999999887
Q ss_pred hhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHHHHHhhhhcCCChHHHHHHHH
Q 001995 340 AIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVKTLGSLLRFKGKIEEWQRVLE 419 (985)
Q Consensus 340 ~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~~~~L~~~~~~~~w~~~~~ 419 (985)
.+... ...+++++|+.+||++||.+.++.... ...+...+.+++|+++|+|+||||+++|++|+.+.+..+|...++
T Consensus 144 ~~~~~-~~~~~l~~L~~~ea~~L~~~~~~~~~~--~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~ 220 (287)
T PF00931_consen 144 SLGGT-DKVIELEPLSEEEALELFKKRAGRKES--ESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALE 220 (287)
T ss_dssp THHSC-EEEEECSS--HHHHHHHHHHHHTSHS------TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHH
T ss_pred ccccc-ccccccccccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccc
Confidence 77652 268999999999999999999876541 234455678999999999999999999999976667789999887
Q ss_pred hhhhhhhc---cccccchhhhcccCCCCcchhHHHhhhccCCCCcccChhHHHHHHhhcCcccccC
Q 001995 420 NELWELEE---LDEGLLGPLLLSYLDLPPPLKKCFSYCAIFPKDSRLEKDKLIRLWMAQDYLKVKG 482 (985)
Q Consensus 420 ~~~~~~~~---~~~~i~~~l~~sy~~L~~~~k~cfl~~a~fp~~~~i~~~~Li~~Wiaeg~i~~~~ 482 (985)
.......+ ....++.++.+||+.||+++|.||+|||+||+++.|+++.|+++|++||||...+
T Consensus 221 ~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~~ 286 (287)
T PF00931_consen 221 ELENSLRESRDYDRSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSKH 286 (287)
T ss_dssp HHHHCHTCSSGSCHHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC---
T ss_pred cccccccccccccccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcccC
Confidence 75555432 2456899999999999999999999999999999999999999999999997643
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.87 E-value=4.3e-22 Score=253.43 Aligned_cols=325 Identities=23% Similarity=0.240 Sum_probs=174.8
Q ss_pred cCCcceeecCC--CC-CCCCcccccCCCCCeEecCCCCCccccchhhcCCCCCcEeeccCcccccccchhhhhcccccee
Q 001995 602 RLTCLRSIDGL--PV-GQIPKGIKKLIHLRYLALGENPWIKELPEALCELCNLQTLDVSLCHYLKRLPERIGQLINLRHL 678 (985)
Q Consensus 602 ~l~~Lr~L~l~--~~-~~lp~~i~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L 678 (985)
.+++|++|+++ .+ ..+|..++.+.+|++|+|++|.....+|..++++++|++|++++|.....+|..++++++|++|
T Consensus 138 ~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 217 (968)
T PLN00113 138 SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWI 217 (968)
T ss_pred ccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEE
Confidence 34555555555 12 2456666667777777777666334566667777777777777766445566667777777777
Q ss_pred ecccccccccccCCCcCCCCCCCCccCceEecCCCcccccCCchhhhccccCcceeeecccccccCCCCcchhhhccccc
Q 001995 679 MNSKEEWSRLSYMPRGMERLTGLRTLGAFVASGGKSSKACSSLKSLNKLKHLEGSLTLRGLGNERDLGDDNDDEKVDLKS 758 (985)
Q Consensus 679 ~l~~~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~~~~l~~ 758 (985)
++++|... ..+|..++++++|++|++..+..... ....+..+++|+ .|.+....- .......+..
T Consensus 218 ~L~~n~l~--~~~p~~l~~l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~----~L~L~~n~l-------~~~~p~~l~~ 282 (968)
T PLN00113 218 YLGYNNLS--GEIPYEIGGLTSLNHLDLVYNNLTGP--IPSSLGNLKNLQ----YLFLYQNKL-------SGPIPPSIFS 282 (968)
T ss_pred ECcCCccC--CcCChhHhcCCCCCEEECcCceeccc--cChhHhCCCCCC----EEECcCCee-------eccCchhHhh
Confidence 77644332 35666667777777776654433210 111233333333 333322110 0111123455
Q ss_pred ccccccEEEEEcCCCCcchhHhhhcCCCCCCCCCeEEEeeccCCCCCCCChhhhccccccEEeEeccCCCCcCC-CCCCC
Q 001995 759 KMKLVDLHLRFDSTTKTKDHRVVLECLQPPSSLEKLGIYGYAGDTISPTSDWMLSLAKLRVLTLRFCNECECLP-PLGKL 837 (985)
Q Consensus 759 ~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l 837 (985)
+.+|+.|++++|. ....++..+..+++|+.|++++|...... |.++..+++|+.|+|++|.....+| .++.+
T Consensus 283 l~~L~~L~Ls~n~-----l~~~~p~~~~~l~~L~~L~l~~n~~~~~~--~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~ 355 (968)
T PLN00113 283 LQKLISLDLSDNS-----LSGEIPELVIQLQNLEILHLFSNNFTGKI--PVALTSLPRLQVLQLWSNKFSGEIPKNLGKH 355 (968)
T ss_pred ccCcCEEECcCCe-----eccCCChhHcCCCCCcEEECCCCccCCcC--ChhHhcCCCCCEEECcCCCCcCcCChHHhCC
Confidence 6677777777654 11223344556778888888887655432 7777788888888888886555555 37778
Q ss_pred CccceeeccCCCCceEeCCcccCCchhhhhhhhhhhcccccc-cCCCCCccceeeccccccccccccc------------
Q 001995 838 PCLETLVLEGMSSVKRLGNGFLGIAEDHQARADQAETASSII-RDTAFPRLETLEFLDMEKWEEWDDC------------ 904 (985)
Q Consensus 838 ~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~fp~L~~L~l~~~~~L~~~~~~------------ 904 (985)
++|+.|+|++|.....+|..+.....+..+.+..+......+ ....+++|+.|++.++.--...+..
T Consensus 356 ~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 435 (968)
T PLN00113 356 NNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDI 435 (968)
T ss_pred CCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEEC
Confidence 888888888765434455444333333322322222221111 1234566666666554311111110
Q ss_pred -------cccCcccccccccceeecccccCCCCCCCCCCCCCcCeEEecCch
Q 001995 905 -------EIAGGKTIMPRLRHLSICWSPELKALPDYILGSTSLDKLLIYYSR 949 (985)
Q Consensus 905 -------~~~~~~~~lp~L~~L~i~~c~~L~~lp~~~~~l~~L~~L~i~~c~ 949 (985)
........+++|+.|++.+|.....+|..+ ..++|+.|++++|.
T Consensus 436 s~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~ 486 (968)
T PLN00113 436 SNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQ 486 (968)
T ss_pred cCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCc
Confidence 000011245566666666665444555433 24566666666654
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.86 E-value=1.1e-21 Score=249.83 Aligned_cols=372 Identities=19% Similarity=0.136 Sum_probs=209.3
Q ss_pred CCeEEEEEEcCCCCCccCCCccccCCCCceEEEccCcCCcchhhhHHHhhccCCcceeecCC--CC-CCCCcccccCCCC
Q 001995 551 WKARHLMITGETRSEMVPFPSMVYDETKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL--PV-GQIPKGIKKLIHL 627 (985)
Q Consensus 551 ~~~r~l~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~--~~-~~lp~~i~~l~~L 627 (985)
.+.+.+.+.++.... ..+..+.++++|++|++++|.. ...++..+.++++|+.|+++ .+ ..+|..++++++|
T Consensus 164 ~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~L~~n~l---~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 238 (968)
T PLN00113 164 SSLKVLDLGGNVLVG--KIPNSLTNLTSLEFLTLASNQL---VGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSL 238 (968)
T ss_pred CCCCEEECccCcccc--cCChhhhhCcCCCeeeccCCCC---cCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCC
Confidence 345566665554421 2345556666677777666642 22234456666677777666 22 2456666777777
Q ss_pred CeEecCCCCCccccchhhcCCCCCcEeeccCcccccccchhhhhccccceeecccccccccccCCCcCCCCCCCCccCce
Q 001995 628 RYLALGENPWIKELPEALCELCNLQTLDVSLCHYLKRLPERIGQLINLRHLMNSKEEWSRLSYMPRGMERLTGLRTLGAF 707 (985)
Q Consensus 628 r~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~l~~lp~~i~~l~~L~~L~~~ 707 (985)
++|++++|.....+|..++++++|++|++++|.....+|..+..+++|++|++++|.. ...+|..+.++++|+.|++.
T Consensus 239 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l--~~~~p~~~~~l~~L~~L~l~ 316 (968)
T PLN00113 239 NHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSL--SGEIPELVIQLQNLEILHLF 316 (968)
T ss_pred CEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCee--ccCCChhHcCCCCCcEEECC
Confidence 7777776663335666677777777777776664455666666777777777764332 23456666666777776665
Q ss_pred EecCCCcccccCCchhhhccccCcceeeecccccccCCCCcchhhhcccccccccccEEEEEcCCCCc------------
Q 001995 708 VASGGKSSKACSSLKSLNKLKHLEGSLTLRGLGNERDLGDDNDDEKVDLKSKMKLVDLHLRFDSTTKT------------ 775 (985)
Q Consensus 708 ~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~------------ 775 (985)
.+..... ....+..+++|+ .|.+....-. ......+..+.+|+.|+++++.....
T Consensus 317 ~n~~~~~--~~~~~~~l~~L~----~L~L~~n~l~-------~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~ 383 (968)
T PLN00113 317 SNNFTGK--IPVALTSLPRLQ----VLQLWSNKFS-------GEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLF 383 (968)
T ss_pred CCccCCc--CChhHhcCCCCC----EEECcCCCCc-------CcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCC
Confidence 4433221 111223333333 3333221100 00111233445555555554430000
Q ss_pred -------chhHhhhcCCCCCCCCCeEEEeeccCCCCCCCChhhhccccccEEeEeccCCCCcCC-CCCCCCccceeeccC
Q 001995 776 -------KDHRVVLECLQPPSSLEKLGIYGYAGDTISPTSDWMLSLAKLRVLTLRFCNECECLP-PLGKLPCLETLVLEG 847 (985)
Q Consensus 776 -------~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~ 847 (985)
......+..+..+++|+.|++.+|...... |..+..+++|+.|+|++|.....+| .+..+++|+.|+|++
T Consensus 384 ~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~--p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 461 (968)
T PLN00113 384 KLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGEL--PSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLAR 461 (968)
T ss_pred EEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeEC--ChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcC
Confidence 001112223344566777777766654322 6666677777777777775444444 245677888888877
Q ss_pred CCCceEeCCcccCCchhhhhhhhhhhcccccc-cCCCCCccceeeccccccccccccccccCcccccccccceeeccccc
Q 001995 848 MSSVKRLGNGFLGIAEDHQARADQAETASSII-RDTAFPRLETLEFLDMEKWEEWDDCEIAGGKTIMPRLRHLSICWSPE 926 (985)
Q Consensus 848 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~lp~L~~L~i~~c~~ 926 (985)
|.....+|..+ ....+..+++..+......+ ....+++|+.|+++++.-....+. ....+++|+.|+|++|..
T Consensus 462 n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~-----~~~~l~~L~~L~Ls~N~l 535 (968)
T PLN00113 462 NKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPD-----ELSSCKKLVSLDLSHNQL 535 (968)
T ss_pred ceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCCh-----HHcCccCCCEEECCCCcc
Confidence 76444444422 22333444444444433322 224577888888887543223332 445789999999999876
Q ss_pred CCCCCCCCCCCCCcCeEEecCchh
Q 001995 927 LKALPDYILGSTSLDKLLIYYSRH 950 (985)
Q Consensus 927 L~~lp~~~~~l~~L~~L~i~~c~~ 950 (985)
...+|..+.++++|+.|++++|..
T Consensus 536 ~~~~p~~~~~l~~L~~L~Ls~N~l 559 (968)
T PLN00113 536 SGQIPASFSEMPVLSQLDLSQNQL 559 (968)
T ss_pred cccCChhHhCcccCCEEECCCCcc
Confidence 677888888899999999999874
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.85 E-value=2.3e-23 Score=223.60 Aligned_cols=338 Identities=23% Similarity=0.249 Sum_probs=247.8
Q ss_pred eEEEEEEcCCCCCccCCCccccCCCCceEEEccCcCCcchhhhHHHhhccCCcceeecCC----CCCCCCcccccCCCCC
Q 001995 553 ARHLMITGETRSEMVPFPSMVYDETKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL----PVGQIPKGIKKLIHLR 628 (985)
Q Consensus 553 ~r~l~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~----~~~~lp~~i~~l~~Lr 628 (985)
++.+.+..... ...|..+..+.+|..|.+..|.. ..+..-++.++.||.+++. .-..+|..|..|..|.
T Consensus 34 ~~WLkLnrt~L---~~vPeEL~~lqkLEHLs~~HN~L----~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt 106 (1255)
T KOG0444|consen 34 MTWLKLNRTKL---EQVPEELSRLQKLEHLSMAHNQL----ISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLT 106 (1255)
T ss_pred eeEEEechhhh---hhChHHHHHHhhhhhhhhhhhhh----HhhhhhhccchhhHHHhhhccccccCCCCchhcccccce
Confidence 33444444333 33566666777777777776652 2233446777888888776 3456899999999999
Q ss_pred eEecCCCCCccccchhhcCCCCCcEeeccCcccccccchhh-hhccccceeecccccccccccCCCcCCCCCCCCccCce
Q 001995 629 YLALGENPWIKELPEALCELCNLQTLDVSLCHYLKRLPERI-GQLINLRHLMNSKEEWSRLSYMPRGMERLTGLRTLGAF 707 (985)
Q Consensus 629 ~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i-~~L~~L~~L~l~~~~~~~l~~lp~~i~~l~~L~~L~~~ 707 (985)
.|+|++|. +.+.|..+..-+++-+|+|++|+ +..+|..+ .+|+-|-.|++++| ++..+|+.+.+|..||+|.+.
T Consensus 107 ~lDLShNq-L~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~N---rLe~LPPQ~RRL~~LqtL~Ls 181 (1255)
T KOG0444|consen 107 ILDLSHNQ-LREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNN---RLEMLPPQIRRLSMLQTLKLS 181 (1255)
T ss_pred eeecchhh-hhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccc---hhhhcCHHHHHHhhhhhhhcC
Confidence 99999999 99999999999999999999998 99999654 68999999999966 458899999999999999987
Q ss_pred EecCCCcccccCCchhhhccccCcceeeecccccccCCCCcchhhhcccccccccccEEEEEcCCCCcchhHhhhcCCCC
Q 001995 708 VASGGKSSKACSSLKSLNKLKHLEGSLTLRGLGNERDLGDDNDDEKVDLKSKMKLVDLHLRFDSTTKTKDHRVVLECLQP 787 (985)
Q Consensus 708 ~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~ 787 (985)
++.... ..++.|+.++.|. .|.+++- .. .......++.++.+|..++++.++ ...+++++..
T Consensus 182 ~NPL~h-----fQLrQLPsmtsL~-vLhms~T---qR---Tl~N~Ptsld~l~NL~dvDlS~N~------Lp~vPecly~ 243 (1255)
T KOG0444|consen 182 NNPLNH-----FQLRQLPSMTSLS-VLHMSNT---QR---TLDNIPTSLDDLHNLRDVDLSENN------LPIVPECLYK 243 (1255)
T ss_pred CChhhH-----HHHhcCccchhhh-hhhcccc---cc---hhhcCCCchhhhhhhhhccccccC------CCcchHHHhh
Confidence 665443 1355555555443 3333322 11 223334567778899999998776 3456777888
Q ss_pred CCCCCeEEEeeccCCCCCCCChhhhccccccEEeEeccCCCCcCC-CCCCCCccceeeccCCC-CceEeCCcccCCchhh
Q 001995 788 PSSLEKLGIYGYAGDTISPTSDWMLSLAKLRVLTLRFCNECECLP-PLGKLPCLETLVLEGMS-SVKRLGNGFLGIAEDH 865 (985)
Q Consensus 788 ~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~-~l~~l~~~~~~~~~~~ 865 (985)
..+|+.|++++|.+.++ ........+|++|+|+.| .+..+| .+.+|++|+.|.+.++. ..+-+|.+
T Consensus 244 l~~LrrLNLS~N~iteL---~~~~~~W~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSG-------- 311 (1255)
T KOG0444|consen 244 LRNLRRLNLSGNKITEL---NMTEGEWENLETLNLSRN-QLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSG-------- 311 (1255)
T ss_pred hhhhheeccCcCceeee---eccHHHHhhhhhhccccc-hhccchHHHhhhHHHHHHHhccCcccccCCccc--------
Confidence 89999999999988777 444556679999999999 456777 48899999999987743 11222322
Q ss_pred hhhhhhhhcccccccCCCCCccceeeccccccccccccccccCcccccccccceeecccccCCCCCCCCCCCCCcCeEEe
Q 001995 866 QARADQAETASSIIRDTAFPRLETLEFLDMEKWEEWDDCEIAGGKTIMPRLRHLSICWSPELKALPDYILGSTSLDKLLI 945 (985)
Q Consensus 866 ~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~lp~L~~L~i~~c~~L~~lp~~~~~l~~L~~L~i 945 (985)
.+.+-+|+.+...+ ++|+-.+. +.+.+++|+.|.++. ..|-++|+.+.-++.|+.|++
T Consensus 312 ---------------IGKL~~Levf~aan-N~LElVPE-----glcRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDl 369 (1255)
T KOG0444|consen 312 ---------------IGKLIQLEVFHAAN-NKLELVPE-----GLCRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDL 369 (1255)
T ss_pred ---------------hhhhhhhHHHHhhc-cccccCch-----hhhhhHHHHHhcccc-cceeechhhhhhcCCcceeec
Confidence 23456777777766 45555555 677899999999965 577889999999999999999
Q ss_pred cCchhhhhh
Q 001995 946 YYSRHLNNR 954 (985)
Q Consensus 946 ~~c~~l~~~ 954 (985)
+.+|+|...
T Consensus 370 reNpnLVMP 378 (1255)
T KOG0444|consen 370 RENPNLVMP 378 (1255)
T ss_pred cCCcCccCC
Confidence 999998654
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.81 E-value=9.9e-21 Score=202.77 Aligned_cols=344 Identities=22% Similarity=0.205 Sum_probs=185.3
Q ss_pred CCceEEEccCcCCcchhhhHHHhhccCCcceeecCC--CCCCCCcccccCCCCCeEecCCCCCccccc-hhhcCCCCCcE
Q 001995 577 TKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL--PVGQIPKGIKKLIHLRYLALGENPWIKELP-EALCELCNLQT 653 (985)
Q Consensus 577 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~--~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp-~~i~~L~~L~~ 653 (985)
+..++|++++|.. .++-..+|.++++|+.+.+. .++.+|.......||+.|+|.+|. |..+- +++..++.|++
T Consensus 78 ~~t~~LdlsnNkl---~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~-I~sv~se~L~~l~alrs 153 (873)
T KOG4194|consen 78 SQTQTLDLSNNKL---SHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNL-ISSVTSEELSALPALRS 153 (873)
T ss_pred cceeeeecccccc---ccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccc-cccccHHHHHhHhhhhh
Confidence 4566777777753 33344557777777777776 567777776777777777777776 65543 34666777777
Q ss_pred eeccCcccccccch-hhhhccccceeecccccccccccCCCcCCCCCCCCccCceEecCCCcccccCCchhhhccccCcc
Q 001995 654 LDVSLCHYLKRLPE-RIGQLINLRHLMNSKEEWSRLSYMPRGMERLTGLRTLGAFVASGGKSSKACSSLKSLNKLKHLEG 732 (985)
Q Consensus 654 L~l~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~ 732 (985)
|||+.|. +.++|. .+..-.++++|++++|..+.+.. ..+..+.+|-+|.+..+.....+.. .++.|++|+.|
T Consensus 154 lDLSrN~-is~i~~~sfp~~~ni~~L~La~N~It~l~~--~~F~~lnsL~tlkLsrNrittLp~r--~Fk~L~~L~~L-- 226 (873)
T KOG4194|consen 154 LDLSRNL-ISEIPKPSFPAKVNIKKLNLASNRITTLET--GHFDSLNSLLTLKLSRNRITTLPQR--SFKRLPKLESL-- 226 (873)
T ss_pred hhhhhch-hhcccCCCCCCCCCceEEeecccccccccc--ccccccchheeeecccCcccccCHH--Hhhhcchhhhh--
Confidence 7777776 666663 34445667777777554432211 2245555555555555444432211 23444444443
Q ss_pred eeeecccccccCC-----------C----CcchhhhcccccccccccEEEEEcCCCCcchhHhhhcCCCCCCCCCeEEEe
Q 001995 733 SLTLRGLGNERDL-----------G----DDNDDEKVDLKSKMKLVDLHLRFDSTTKTKDHRVVLECLQPPSSLEKLGIY 797 (985)
Q Consensus 733 ~L~i~~l~~~~~~-----------~----~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~ 797 (985)
.|..+.+.-+..+ . +........|-.+.+++.|+|..|. ....--.++..+..|+.|+++
T Consensus 227 dLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~-----l~~vn~g~lfgLt~L~~L~lS 301 (873)
T KOG4194|consen 227 DLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNR-----LQAVNEGWLFGLTSLEQLDLS 301 (873)
T ss_pred hccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccch-----hhhhhcccccccchhhhhccc
Confidence 2222222211110 0 0000011234444455555555443 111222334455556666666
Q ss_pred eccCCCCCCCChhhhccccccEEeEeccCCCCcCC--CCCCCCccceeeccCCCCceEeCC-cccCCchhhhhhhhhhhc
Q 001995 798 GYAGDTISPTSDWMLSLAKLRVLTLRFCNECECLP--PLGKLPCLETLVLEGMSSVKRLGN-GFLGIAEDHQARADQAET 874 (985)
Q Consensus 798 ~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~--~l~~l~~L~~L~L~~~~~l~~l~~-~~~~~~~~~~~~~~~~~~ 874 (985)
+|.+..+. ++.....++|+.|+|++| .++.++ .+..|..|+.|+|+.+ .+.++.+ .|.+..+++.+++.+++.
T Consensus 302 ~NaI~rih--~d~WsftqkL~~LdLs~N-~i~~l~~~sf~~L~~Le~LnLs~N-si~~l~e~af~~lssL~~LdLr~N~l 377 (873)
T KOG4194|consen 302 YNAIQRIH--IDSWSFTQKLKELDLSSN-RITRLDEGSFRVLSQLEELNLSHN-SIDHLAEGAFVGLSSLHKLDLRSNEL 377 (873)
T ss_pred hhhhheee--cchhhhcccceeEecccc-ccccCChhHHHHHHHhhhhccccc-chHHHHhhHHHHhhhhhhhcCcCCeE
Confidence 66555544 333344556666666665 333333 2445566666666653 3555543 244455566677777776
Q ss_pred ccccccC----CCCCccceeeccccccccccccccccCcccccccccceeecccccCCCCCCCCCCCCCcCeEEec
Q 001995 875 ASSIIRD----TAFPRLETLEFLDMEKWEEWDDCEIAGGKTIMPRLRHLSICWSPELKALPDYILGSTSLDKLLIY 946 (985)
Q Consensus 875 ~~~~~~~----~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~lp~L~~L~i~~c~~L~~lp~~~~~l~~L~~L~i~ 946 (985)
++.+... .++|+|+.|.|.+ ++++.++.. .+..|++|++|++.+++.-.--|..+.++ .|++|.+.
T Consensus 378 s~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~kr----Afsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 378 SWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKR----AFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred EEEEecchhhhccchhhhheeecC-ceeeecchh----hhccCcccceecCCCCcceeecccccccc-hhhhhhhc
Confidence 6665532 3577777777777 556666542 23357777777777764333335556655 67776543
No 8
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.79 E-value=7.6e-19 Score=223.34 Aligned_cols=341 Identities=21% Similarity=0.149 Sum_probs=236.1
Q ss_pred CCCeEEEEEEcCCCCCccCCCccccCCCCceEEEccCcCCcchhhhHHHhhccCCcceeecCC---CCCCCCcccccCCC
Q 001995 550 SWKARHLMITGETRSEMVPFPSMVYDETKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL---PVGQIPKGIKKLIH 626 (985)
Q Consensus 550 ~~~~r~l~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~---~~~~lp~~i~~l~~ 626 (985)
+..+|.+.+..+.. ...|..+ ...+|+.|.+.++.. . .++..+..+++|+.|+++ .+..+| .++.+++
T Consensus 588 p~~Lr~L~~~~~~l---~~lP~~f-~~~~L~~L~L~~s~l---~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~ 658 (1153)
T PLN03210 588 PPKLRLLRWDKYPL---RCMPSNF-RPENLVKLQMQGSKL---E-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATN 658 (1153)
T ss_pred CcccEEEEecCCCC---CCCCCcC-CccCCcEEECcCccc---c-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCc
Confidence 44577777766655 3344444 568899999988752 2 234446789999999998 356677 4889999
Q ss_pred CCeEecCCCCCccccchhhcCCCCCcEeeccCcccccccchhhhhccccceeecccccccccccCCCcCCCCCCCCccCc
Q 001995 627 LRYLALGENPWIKELPEALCELCNLQTLDVSLCHYLKRLPERIGQLINLRHLMNSKEEWSRLSYMPRGMERLTGLRTLGA 706 (985)
Q Consensus 627 Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~l~~lp~~i~~l~~L~~L~~ 706 (985)
|++|+|++|..+..+|.++++|++|+.|++++|..+..+|..+ ++++|++|+++ +|..+..+|.. .++|+.|++
T Consensus 659 Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Ls--gc~~L~~~p~~---~~nL~~L~L 732 (1153)
T PLN03210 659 LETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLS--GCSRLKSFPDI---STNISWLDL 732 (1153)
T ss_pred ccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCC--CCCCccccccc---cCCcCeeec
Confidence 9999999998899999999999999999999999999999876 79999999999 67777777753 456777777
Q ss_pred eEecCCCcccccCCchhhhccccCcceeeecccccccCCCCcchhhhcccccccccccEEEEEcCCCCcchhHhhhcCCC
Q 001995 707 FVASGGKSSKACSSLKSLNKLKHLEGSLTLRGLGNERDLGDDNDDEKVDLKSKMKLVDLHLRFDSTTKTKDHRVVLECLQ 786 (985)
Q Consensus 707 ~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~ 786 (985)
..+.....+. . ..+++|.. |.+..+....-+..............++|+.|.++.+. ....++..+.
T Consensus 733 ~~n~i~~lP~---~-~~l~~L~~----L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~-----~l~~lP~si~ 799 (1153)
T PLN03210 733 DETAIEEFPS---N-LRLENLDE----LILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIP-----SLVELPSSIQ 799 (1153)
T ss_pred CCCccccccc---c-cccccccc----ccccccchhhccccccccchhhhhccccchheeCCCCC-----CccccChhhh
Confidence 6544332111 1 12333332 33322111000000000000112234688999998764 1223455567
Q ss_pred CCCCCCeEEEeeccCCCCCCCChhhhccccccEEeEeccCCCCcCCCCCCCCccceeeccCCCCceEeCCcccCCchhhh
Q 001995 787 PPSSLEKLGIYGYAGDTISPTSDWMLSLAKLRVLTLRFCNECECLPPLGKLPCLETLVLEGMSSVKRLGNGFLGIAEDHQ 866 (985)
Q Consensus 787 ~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~ 866 (985)
.+++|+.|++++|..... +|..+ ++++|+.|+|++|..+..+|.+ .++|+.|+|.++ .++.+|..+
T Consensus 800 ~L~~L~~L~Ls~C~~L~~--LP~~~-~L~sL~~L~Ls~c~~L~~~p~~--~~nL~~L~Ls~n-~i~~iP~si-------- 865 (1153)
T PLN03210 800 NLHKLEHLEIENCINLET--LPTGI-NLESLESLDLSGCSRLRTFPDI--STNISDLNLSRT-GIEEVPWWI-------- 865 (1153)
T ss_pred CCCCCCEEECCCCCCcCe--eCCCC-CccccCEEECCCCCcccccccc--ccccCEeECCCC-CCccChHHH--------
Confidence 789999999999864332 26655 6899999999999888777754 478999999885 466666532
Q ss_pred hhhhhhhcccccccCCCCCccceeeccccccccccccccccCcccccccccceeecccccCCCCCCCC------------
Q 001995 867 ARADQAETASSIIRDTAFPRLETLEFLDMEKWEEWDDCEIAGGKTIMPRLRHLSICWSPELKALPDYI------------ 934 (985)
Q Consensus 867 ~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~lp~L~~L~i~~c~~L~~lp~~~------------ 934 (985)
..+++|+.|++.+|++++.++. ....+++|+.|++++|+.|+.++..-
T Consensus 866 ---------------~~l~~L~~L~L~~C~~L~~l~~-----~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~ 925 (1153)
T PLN03210 866 ---------------EKFSNLSFLDMNGCNNLQRVSL-----NISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNI 925 (1153)
T ss_pred ---------------hcCCCCCEEECCCCCCcCccCc-----ccccccCCCeeecCCCcccccccCCCCchhhhhhcccc
Confidence 3588999999999999998776 45578999999999999998654210
Q ss_pred -CCCCCcCeEEecCchhhh
Q 001995 935 -LGSTSLDKLLIYYSRHLN 952 (985)
Q Consensus 935 -~~l~~L~~L~i~~c~~l~ 952 (985)
..+++...+.+.+|.++.
T Consensus 926 ~~~~p~~~~l~f~nC~~L~ 944 (1153)
T PLN03210 926 HSKLPSTVCINFINCFNLD 944 (1153)
T ss_pred cccCCchhccccccccCCC
Confidence 123334556677887764
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.78 E-value=2.2e-20 Score=200.12 Aligned_cols=333 Identities=20% Similarity=0.238 Sum_probs=227.5
Q ss_pred CeEEEEEEcCCCCCccCCCccccCCCCceEEEccCcCCcchhhhHHHhhccCCcceeecCC--CCCCCCc-ccccCCCCC
Q 001995 552 KARHLMITGETRSEMVPFPSMVYDETKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL--PVGQIPK-GIKKLIHLR 628 (985)
Q Consensus 552 ~~r~l~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~--~~~~lp~-~i~~l~~Lr 628 (985)
+...+++..+.. ..+|.......+|..|++.+|.. ...-...++-+..||+|||+ .+.++|. ++..=.+++
T Consensus 103 nLq~v~l~~N~L---t~IP~f~~~sghl~~L~L~~N~I---~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~ 176 (873)
T KOG4194|consen 103 NLQEVNLNKNEL---TRIPRFGHESGHLEKLDLRHNLI---SSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIK 176 (873)
T ss_pred cceeeeeccchh---hhcccccccccceeEEeeecccc---ccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCce
Confidence 444555555544 34555555566678888777753 33333446677889999998 5677764 466667899
Q ss_pred eEecCCCCCccccch-hhcCCCCCcEeeccCcccccccchh-hhhccccceeecccccccccccCCCcCCCCCCCCccCc
Q 001995 629 YLALGENPWIKELPE-ALCELCNLQTLDVSLCHYLKRLPER-IGQLINLRHLMNSKEEWSRLSYMPRGMERLTGLRTLGA 706 (985)
Q Consensus 629 ~L~L~~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~l~~lp~~i~~l~~L~~L~~ 706 (985)
+|+|++|. |+.+-. .+..|.+|.+|.|+.|. +..+|.. +.+|++|+.|++..|...-.+. -.+..|.+|+.|.+
T Consensus 177 ~L~La~N~-It~l~~~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN~irive~--ltFqgL~Sl~nlkl 252 (873)
T KOG4194|consen 177 KLNLASNR-ITTLETGHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNRNRIRIVEG--LTFQGLPSLQNLKL 252 (873)
T ss_pred EEeecccc-ccccccccccccchheeeecccCc-ccccCHHHhhhcchhhhhhccccceeeehh--hhhcCchhhhhhhh
Confidence 99999998 887754 47788899999999998 8889864 4559999999998665421111 24778888888888
Q ss_pred eEecCCCcccccCCchhhhccccCcceeeecccccccCCCCcchhhhcccccccccccEEEEEcCCCCcchhHhhhcCCC
Q 001995 707 FVASGGKSSKACSSLKSLNKLKHLEGSLTLRGLGNERDLGDDNDDEKVDLKSKMKLVDLHLRFDSTTKTKDHRVVLECLQ 786 (985)
Q Consensus 707 ~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~ 786 (985)
-.++.....+| .+-.|.++.+| .|..+.+..+.. .-+.++..|+.|++++|. ....-.+..+
T Consensus 253 qrN~I~kL~DG--~Fy~l~kme~l--~L~~N~l~~vn~---------g~lfgLt~L~~L~lS~Na-----I~rih~d~Ws 314 (873)
T KOG4194|consen 253 QRNDISKLDDG--AFYGLEKMEHL--NLETNRLQAVNE---------GWLFGLTSLEQLDLSYNA-----IQRIHIDSWS 314 (873)
T ss_pred hhcCcccccCc--ceeeeccccee--ecccchhhhhhc---------ccccccchhhhhccchhh-----hheeecchhh
Confidence 76665554444 35667777766 566665544332 446778899999999886 2222244566
Q ss_pred CCCCCCeEEEeeccCCCCCCCChhhhccccccEEeEeccCCCCcCC--CCCCCCccceeeccCCCCceE-eCC---cccC
Q 001995 787 PPSSLEKLGIYGYAGDTISPTSDWMLSLAKLRVLTLRFCNECECLP--PLGKLPCLETLVLEGMSSVKR-LGN---GFLG 860 (985)
Q Consensus 787 ~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~--~l~~l~~L~~L~L~~~~~l~~-l~~---~~~~ 860 (985)
-+++|+.|+|++|....+. +..+..|..|+.|+|+.| .++.+. .+..+.+|+.|+|+.+. +.. +.+ .|.+
T Consensus 315 ftqkL~~LdLs~N~i~~l~--~~sf~~L~~Le~LnLs~N-si~~l~e~af~~lssL~~LdLr~N~-ls~~IEDaa~~f~g 390 (873)
T KOG4194|consen 315 FTQKLKELDLSSNRITRLD--EGSFRVLSQLEELNLSHN-SIDHLAEGAFVGLSSLHKLDLRSNE-LSWCIEDAAVAFNG 390 (873)
T ss_pred hcccceeEeccccccccCC--hhHHHHHHHhhhhccccc-chHHHHhhHHHHhhhhhhhcCcCCe-EEEEEecchhhhcc
Confidence 6789999999999998885 678889999999999999 455554 46789999999999854 333 222 2334
Q ss_pred Cchhhhhhhhhhhccccccc-CCCCCccceeeccccccccccccccccCcccccccccceeec
Q 001995 861 IAEDHQARADQAETASSIIR-DTAFPRLETLEFLDMEKWEEWDDCEIAGGKTIMPRLRHLSIC 922 (985)
Q Consensus 861 ~~~~~~~~~~~~~~~~~~~~-~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~lp~L~~L~i~ 922 (985)
...+..+.+..++....... -.+|++|++|+|.+. .+.++-.. .+..| .|++|.+.
T Consensus 391 l~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~N-aiaSIq~n----AFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 391 LPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDN-AIASIQPN----AFEPM-ELKELVMN 447 (873)
T ss_pred chhhhheeecCceeeecchhhhccCcccceecCCCC-cceeeccc----ccccc-hhhhhhhc
Confidence 44445555555665444432 368999999999873 33333321 23345 78777653
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.76 E-value=1.4e-20 Score=202.43 Aligned_cols=339 Identities=20% Similarity=0.204 Sum_probs=207.1
Q ss_pred CeEEEEEEcCCCCCccCCCccccCCCCceEEEccCcCCcchhhhHHHhhccCCcceeecCC--CCCCCCcccccCCCCCe
Q 001995 552 KARHLMITGETRSEMVPFPSMVYDETKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL--PVGQIPKGIKKLIHLRY 629 (985)
Q Consensus 552 ~~r~l~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~--~~~~lp~~i~~l~~Lr~ 629 (985)
-+|-+.++++++++. .+|.....++.++.|.+.... ...+|.-++.+..|..|.+. .+..+-..++.|+.||.
T Consensus 8 FVrGvDfsgNDFsg~-~FP~~v~qMt~~~WLkLnrt~----L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRs 82 (1255)
T KOG0444|consen 8 FVRGVDFSGNDFSGD-RFPHDVEQMTQMTWLKLNRTK----LEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRS 82 (1255)
T ss_pred eeecccccCCcCCCC-cCchhHHHhhheeEEEechhh----hhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHH
Confidence 356666777776542 356667777777777776654 22345556667777777666 45555566677777777
Q ss_pred EecCCCCCcc--ccchhhcCCCCCcEeeccCcccccccchhhhhccccceeecccccccccccCCCc-CCCCCCCCccCc
Q 001995 630 LALGENPWIK--ELPEALCELCNLQTLDVSLCHYLKRLPERIGQLINLRHLMNSKEEWSRLSYMPRG-MERLTGLRTLGA 706 (985)
Q Consensus 630 L~L~~~~~i~--~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~l~~lp~~-i~~l~~L~~L~~ 706 (985)
+.++.|+ ++ .+|..|.+|..|.+|||++|+ +.+.|..+..-+++-.|++++| ++..+|.. +.+|+.|-.|++
T Consensus 83 v~~R~N~-LKnsGiP~diF~l~dLt~lDLShNq-L~EvP~~LE~AKn~iVLNLS~N---~IetIPn~lfinLtDLLfLDL 157 (1255)
T KOG0444|consen 83 VIVRDNN-LKNSGIPTDIFRLKDLTILDLSHNQ-LREVPTNLEYAKNSIVLNLSYN---NIETIPNSLFINLTDLLFLDL 157 (1255)
T ss_pred Hhhhccc-cccCCCCchhcccccceeeecchhh-hhhcchhhhhhcCcEEEEcccC---ccccCCchHHHhhHhHhhhcc
Confidence 7777776 43 477777777777778887777 7777777777777777777754 34667754 456777777766
Q ss_pred eEecCCCcccccCCchhhhccccCcceeeecccccccCCCCcchhhhcccccccccccEEEEEcCCCCcchhHhhhcCCC
Q 001995 707 FVASGGKSSKACSSLKSLNKLKHLEGSLTLRGLGNERDLGDDNDDEKVDLKSKMKLVDLHLRFDSTTKTKDHRVVLECLQ 786 (985)
Q Consensus 707 ~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~ 786 (985)
+.+.... .++.++.|..|+.| +|+-+.+.. ...-.+.++++|..|+++... .....++.++.
T Consensus 158 S~NrLe~---LPPQ~RRL~~LqtL--~Ls~NPL~h---------fQLrQLPsmtsL~vLhms~Tq----RTl~N~Ptsld 219 (1255)
T KOG0444|consen 158 SNNRLEM---LPPQIRRLSMLQTL--KLSNNPLNH---------FQLRQLPSMTSLSVLHMSNTQ----RTLDNIPTSLD 219 (1255)
T ss_pred ccchhhh---cCHHHHHHhhhhhh--hcCCChhhH---------HHHhcCccchhhhhhhccccc----chhhcCCCchh
Confidence 6554333 22234444444443 232222211 111223334444455554332 11223344444
Q ss_pred CCCCCCeEEEeeccCCCCCCCChhhhccccccEEeEeccCCCCcCC-CCCCCCccceeeccCCCCceEeCCcccCCchhh
Q 001995 787 PPSSLEKLGIYGYAGDTISPTSDWMLSLAKLRVLTLRFCNECECLP-PLGKLPCLETLVLEGMSSVKRLGNGFLGIAEDH 865 (985)
Q Consensus 787 ~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~ 865 (985)
.+.||..++++.|....+ |..+..+++|+.|+|++|. ++.+. ..+.-.+|++|+|+.+. +..+|...
T Consensus 220 ~l~NL~dvDlS~N~Lp~v---Pecly~l~~LrrLNLS~N~-iteL~~~~~~W~~lEtLNlSrNQ-Lt~LP~av------- 287 (1255)
T KOG0444|consen 220 DLHNLRDVDLSENNLPIV---PECLYKLRNLRRLNLSGNK-ITELNMTEGEWENLETLNLSRNQ-LTVLPDAV------- 287 (1255)
T ss_pred hhhhhhhccccccCCCcc---hHHHhhhhhhheeccCcCc-eeeeeccHHHHhhhhhhccccch-hccchHHH-------
Confidence 455666666666655544 6666666666666666663 23222 23344556666666532 55555432
Q ss_pred hhhhhhhhcccccccCCCCCccceeeccccccccccccccccCcccccccccceeecccccCCCCCCCCCCCCCcCeEEe
Q 001995 866 QARADQAETASSIIRDTAFPRLETLEFLDMEKWEEWDDCEIAGGKTIMPRLRHLSICWSPELKALPDYILGSTSLDKLLI 945 (985)
Q Consensus 866 ~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~lp~L~~L~i~~c~~L~~lp~~~~~l~~L~~L~i 945 (985)
..+++|+.|.+.+. .+.+.+...+++.+.+|+.+...++ +|.-+|+++..|+.|++|.+
T Consensus 288 ----------------cKL~kL~kLy~n~N----kL~FeGiPSGIGKL~~Levf~aanN-~LElVPEglcRC~kL~kL~L 346 (1255)
T KOG0444|consen 288 ----------------CKLTKLTKLYANNN----KLTFEGIPSGIGKLIQLEVFHAANN-KLELVPEGLCRCVKLQKLKL 346 (1255)
T ss_pred ----------------hhhHHHHHHHhccC----cccccCCccchhhhhhhHHHHhhcc-ccccCchhhhhhHHHHHhcc
Confidence 35788888888662 2333333447889999999999885 89999999999999999999
Q ss_pred cCchhh
Q 001995 946 YYSRHL 951 (985)
Q Consensus 946 ~~c~~l 951 (985)
..+..+
T Consensus 347 ~~NrLi 352 (1255)
T KOG0444|consen 347 DHNRLI 352 (1255)
T ss_pred ccccee
Confidence 876543
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.67 E-value=4.6e-19 Score=182.24 Aligned_cols=341 Identities=21% Similarity=0.233 Sum_probs=214.3
Q ss_pred CccccCCCCceEEEccCcCCcchhhhHHHhhccCCcceeecCC--CCCCCCcccccCCCCCeEecCCCCCccccchhhcC
Q 001995 570 PSMVYDETKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL--PVGQIPKGIKKLIHLRYLALGENPWIKELPEALCE 647 (985)
Q Consensus 570 ~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~--~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp~~i~~ 647 (985)
.....++..+.+|.+..+.. ..+|..+..+..+..|+.+ .+.++|+.++.+..|+.|+.+.|. +.++|++|+.
T Consensus 61 ~~dl~nL~~l~vl~~~~n~l----~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~-~~el~~~i~~ 135 (565)
T KOG0472|consen 61 REDLKNLACLTVLNVHDNKL----SQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNE-LKELPDSIGR 135 (565)
T ss_pred cHhhhcccceeEEEeccchh----hhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccc-eeecCchHHH
Confidence 34455666677777776652 2234445666666666666 566777777777777777777777 7777777777
Q ss_pred CCCCcEeeccCcccccccchhhhhccccceeecccccccccccCCCcCCCCCCCCccCceEecCCCcccccCCchhhhcc
Q 001995 648 LCNLQTLDVSLCHYLKRLPERIGQLINLRHLMNSKEEWSRLSYMPRGMERLTGLRTLGAFVASGGKSSKACSSLKSLNKL 727 (985)
Q Consensus 648 L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~L~~L 727 (985)
+..|+.|+..+|+ +..+|.+++.+.+|..|++.+| .+..+|+..-+|+.|++|++..+.... .+..+..+.+|
T Consensus 136 ~~~l~dl~~~~N~-i~slp~~~~~~~~l~~l~~~~n---~l~~l~~~~i~m~~L~~ld~~~N~L~t---lP~~lg~l~~L 208 (565)
T KOG0472|consen 136 LLDLEDLDATNNQ-ISSLPEDMVNLSKLSKLDLEGN---KLKALPENHIAMKRLKHLDCNSNLLET---LPPELGGLESL 208 (565)
T ss_pred Hhhhhhhhccccc-cccCchHHHHHHHHHHhhcccc---chhhCCHHHHHHHHHHhcccchhhhhc---CChhhcchhhh
Confidence 7777777777776 7777777777777777777644 345666665557777777765544433 12223333333
Q ss_pred ccCcceeeecccccccCCCCcchhhhcccccccccccEEEEEcCCCCcchhHhhhcCCCCCCCCCeEEEeeccCCCCCCC
Q 001995 728 KHLEGSLTLRGLGNERDLGDDNDDEKVDLKSKMKLVDLHLRFDSTTKTKDHRVVLECLQPPSSLEKLGIYGYAGDTISPT 807 (985)
Q Consensus 728 ~~L~~~L~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 807 (985)
..| .|.-+.+..+ ..|.+|..|..|++..+. ....-.+.+..+++|..|++..|...++
T Consensus 209 ~~L--yL~~Nki~~l-----------Pef~gcs~L~Elh~g~N~-----i~~lpae~~~~L~~l~vLDLRdNklke~--- 267 (565)
T KOG0472|consen 209 ELL--YLRRNKIRFL-----------PEFPGCSLLKELHVGENQ-----IEMLPAEHLKHLNSLLVLDLRDNKLKEV--- 267 (565)
T ss_pred HHH--HhhhcccccC-----------CCCCccHHHHHHHhcccH-----HHhhHHHHhcccccceeeeccccccccC---
Confidence 322 1222222111 235667777777776554 1111123345678899999999998888
Q ss_pred ChhhhccccccEEeEeccCCCCcCC-CCCCCCccceeeccCCCCceEeCCcccCCchhhhhhhhhh----------h---
Q 001995 808 SDWMLSLAKLRVLTLRFCNECECLP-PLGKLPCLETLVLEGMSSVKRLGNGFLGIAEDHQARADQA----------E--- 873 (985)
Q Consensus 808 p~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~----------~--- 873 (985)
|..+.-+.+|..|++++| .+..+| .+|++ +|+.|.+.|++ ++.+..+.+..++...++-... +
T Consensus 268 Pde~clLrsL~rLDlSNN-~is~Lp~sLgnl-hL~~L~leGNP-lrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~ 344 (565)
T KOG0472|consen 268 PDEICLLRSLERLDLSNN-DISSLPYSLGNL-HLKFLALEGNP-LRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGT 344 (565)
T ss_pred chHHHHhhhhhhhcccCC-ccccCCcccccc-eeeehhhcCCc-hHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccc
Confidence 999999999999999999 556666 59999 99999999987 6666555554444332221111 0
Q ss_pred ------cccccccCCCCCccceeecccccccccccccc--c---------------------------------------
Q 001995 874 ------TASSIIRDTAFPRLETLEFLDMEKWEEWDDCE--I--------------------------------------- 906 (985)
Q Consensus 874 ------~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~--~--------------------------------------- 906 (985)
.....+.....-+.+.|.+++ .+++.++... .
T Consensus 345 e~~~t~~~~~~~~~~~~i~tkiL~~s~-~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~ 423 (565)
T KOG0472|consen 345 ETAMTLPSESFPDIYAIITTKILDVSD-KQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNK 423 (565)
T ss_pred cccCCCCCCcccchhhhhhhhhhcccc-cccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCc
Confidence 001111112233456666554 2233222100 0
Q ss_pred ----cCcccccccccceeecccccCCCCCCCCCCCCCcCeEEecCc
Q 001995 907 ----AGGKTIMPRLRHLSICWSPELKALPDYILGSTSLDKLLIYYS 948 (985)
Q Consensus 907 ----~~~~~~lp~L~~L~i~~c~~L~~lp~~~~~l~~L~~L~i~~c 948 (985)
......+++|..|+++++ -|.++|..++.+..|+.|+|+..
T Consensus 424 isfv~~~l~~l~kLt~L~L~NN-~Ln~LP~e~~~lv~Lq~LnlS~N 468 (565)
T KOG0472|consen 424 ISFVPLELSQLQKLTFLDLSNN-LLNDLPEEMGSLVRLQTLNLSFN 468 (565)
T ss_pred cccchHHHHhhhcceeeecccc-hhhhcchhhhhhhhhheeccccc
Confidence 002246899999999986 58889988888999999999875
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.66 E-value=3.2e-19 Score=183.39 Aligned_cols=145 Identities=25% Similarity=0.321 Sum_probs=111.6
Q ss_pred EEEEcCCCCCccCCCccccCCCCceEEEccCcCCcchhhhHHHhhccCCcceeecCC--CCCCCCcccccCCCCCeEecC
Q 001995 556 LMITGETRSEMVPFPSMVYDETKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL--PVGQIPKGIKKLIHLRYLALG 633 (985)
Q Consensus 556 l~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~--~~~~lp~~i~~l~~Lr~L~L~ 633 (985)
+.++.+.. ...|..+.+..++..+..+.+.. ..+|.-+..+..|+.|+++ ...++|++|+.+..|..|+..
T Consensus 73 l~~~~n~l---~~lp~aig~l~~l~~l~vs~n~l----s~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~ 145 (565)
T KOG0472|consen 73 LNVHDNKL---SQLPAAIGELEALKSLNVSHNKL----SELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDAT 145 (565)
T ss_pred EEeccchh---hhCCHHHHHHHHHHHhhcccchH----hhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhcc
Confidence 44444444 34567777778888888777752 2245556777778888887 677888999999999999988
Q ss_pred CCCCccccchhhcCCCCCcEeeccCcccccccchhhhhccccceeecccccccccccCCCcCCCCCCCCccCceEecCC
Q 001995 634 ENPWIKELPEALCELCNLQTLDVSLCHYLKRLPERIGQLINLRHLMNSKEEWSRLSYMPRGMERLTGLRTLGAFVASGG 712 (985)
Q Consensus 634 ~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~ 712 (985)
+|. +..+|..+..+..|..|++.+++ +..+|+..-.++.|+||+...| .++.+|+.++.|.+|..|++..+...
T Consensus 146 ~N~-i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~m~~L~~ld~~~N---~L~tlP~~lg~l~~L~~LyL~~Nki~ 219 (565)
T KOG0472|consen 146 NNQ-ISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIAMKRLKHLDCNSN---LLETLPPELGGLESLELLYLRRNKIR 219 (565)
T ss_pred ccc-cccCchHHHHHHHHHHhhccccc-hhhCCHHHHHHHHHHhcccchh---hhhcCChhhcchhhhHHHHhhhcccc
Confidence 888 88999999999999999999988 8888877777999999987643 45788999999988888888665443
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.52 E-value=7.8e-16 Score=174.76 Aligned_cols=316 Identities=24% Similarity=0.293 Sum_probs=159.3
Q ss_pred CCcceeecCC--CCCCCCcccccCCCCCeEecCCCCCccccchhhcCCCCCcEeeccCcccccccchhhhhccccceeec
Q 001995 603 LTCLRSIDGL--PVGQIPKGIKKLIHLRYLALGENPWIKELPEALCELCNLQTLDVSLCHYLKRLPERIGQLINLRHLMN 680 (985)
Q Consensus 603 l~~Lr~L~l~--~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l 680 (985)
.-.|++|+++ .+...|..|..+.+|+.|+++.|. |..+|.+++++.+|++|+|.+|. +..+|.++..+++|++|++
T Consensus 44 ~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~-i~~vp~s~~~~~~l~~lnL~~n~-l~~lP~~~~~lknl~~Ldl 121 (1081)
T KOG0618|consen 44 RVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNY-IRSVPSSCSNMRNLQYLNLKNNR-LQSLPASISELKNLQYLDL 121 (1081)
T ss_pred eeeeEEeeccccccccCCchhhhHHHHhhcccchhh-HhhCchhhhhhhcchhheeccch-hhcCchhHHhhhccccccc
Confidence 3336666666 455556666666666666666666 66666666666666666666555 6666666666666666666
Q ss_pred ccccccccccCCCcCCCCCCCCccCceEecCCCcc--------------cccCCchhhhccccCcceeeecccccccCCC
Q 001995 681 SKEEWSRLSYMPRGMERLTGLRTLGAFVASGGKSS--------------KACSSLKSLNKLKHLEGSLTLRGLGNERDLG 746 (985)
Q Consensus 681 ~~~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~--------------~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~ 746 (985)
+.|.. ..+|.-+..++.+..+...++...... -+...+.+...|++ ...|+-+.+.
T Consensus 122 S~N~f---~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~-~ldLr~N~~~------ 191 (1081)
T KOG0618|consen 122 SFNHF---GPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH-QLDLRYNEME------ 191 (1081)
T ss_pred chhcc---CCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe-eeecccchhh------
Confidence 65433 344444444433333333222000000 00001111222222 0012211111
Q ss_pred CcchhhhcccccccccccEEEEEcC----------CCC---cchhHhhhcCCCCCCCCCeEEEeeccCCCCCCCChhhhc
Q 001995 747 DDNDDEKVDLKSKMKLVDLHLRFDS----------TTK---TKDHRVVLECLQPPSSLEKLGIYGYAGDTISPTSDWMLS 813 (985)
Q Consensus 747 ~~~~~~~~~l~~~~~L~~L~l~~~~----------~~~---~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~ 813 (985)
...+..+.+|+.|....+. ... ..........-.-+.+|++++++.+....+ |+|+..
T Consensus 192 ------~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~l---p~wi~~ 262 (1081)
T KOG0618|consen 192 ------VLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNL---PEWIGA 262 (1081)
T ss_pred ------hhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcc---hHHHHh
Confidence 1222233333333222211 000 000011112223357899999999888777 899998
Q ss_pred cccccEEeEeccCC----------------------CCcCCC-CCCCCccceeeccCCCCceEeCCcccCCch--hhhhh
Q 001995 814 LAKLRVLTLRFCNE----------------------CECLPP-LGKLPCLETLVLEGMSSVKRLGNGFLGIAE--DHQAR 868 (985)
Q Consensus 814 l~~L~~L~L~~~~~----------------------~~~l~~-l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~--~~~~~ 868 (985)
+.+|+.|....|.. ++.+|+ ++.+.+|++|+|..+. +..+|+.++.... +..++
T Consensus 263 ~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~-L~~lp~~~l~v~~~~l~~ln 341 (1081)
T KOG0618|consen 263 CANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNN-LPSLPDNFLAVLNASLNTLN 341 (1081)
T ss_pred cccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcc-ccccchHHHhhhhHHHHHHh
Confidence 88888888877642 233444 4558899999998744 7777764433221 11222
Q ss_pred hhhhhcc-------------------------cccccCCCCCccceeeccccccccccccccccCcccccccccceeecc
Q 001995 869 ADQAETA-------------------------SSIIRDTAFPRLETLEFLDMEKWEEWDDCEIAGGKTIMPRLRHLSICW 923 (985)
Q Consensus 869 ~~~~~~~-------------------------~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~lp~L~~L~i~~ 923 (985)
.+.+... .+.+...+|++||.|+|++ +.|..++.. ....++.|+.|++++
T Consensus 342 ~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsy-NrL~~fpas----~~~kle~LeeL~LSG 416 (1081)
T KOG0618|consen 342 VSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSY-NRLNSFPAS----KLRKLEELEELNLSG 416 (1081)
T ss_pred hhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecc-cccccCCHH----HHhchHHhHHHhccc
Confidence 2222211 1222234566666666665 334444432 223466666666666
Q ss_pred cccCCCCCCCCCCCCCcCeEEec
Q 001995 924 SPELKALPDYILGSTSLDKLLIY 946 (985)
Q Consensus 924 c~~L~~lp~~~~~l~~L~~L~i~ 946 (985)
+ +|+.+|..+.+++.|+.|...
T Consensus 417 N-kL~~Lp~tva~~~~L~tL~ah 438 (1081)
T KOG0618|consen 417 N-KLTTLPDTVANLGRLHTLRAH 438 (1081)
T ss_pred c-hhhhhhHHHHhhhhhHHHhhc
Confidence 4 566666666666666666443
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.44 E-value=4.1e-13 Score=158.43 Aligned_cols=252 Identities=19% Similarity=0.159 Sum_probs=148.3
Q ss_pred ceeecCC--CCCCCCcccccCCCCCeEecCCCCCccccchhhcCCCCCcEeeccCcccccccchhhhhccccceeecccc
Q 001995 606 LRSIDGL--PVGQIPKGIKKLIHLRYLALGENPWIKELPEALCELCNLQTLDVSLCHYLKRLPERIGQLINLRHLMNSKE 683 (985)
Q Consensus 606 Lr~L~l~--~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~ 683 (985)
-.+|+++ .+..+|..+. .+|+.|++.+|. ++.+|. .+++|++|++++|+ +..+|.. .++|++|++++|
T Consensus 203 ~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~-Lt~LP~---lp~~Lk~LdLs~N~-LtsLP~l---p~sL~~L~Ls~N 272 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCLP--AHITTLVIPDNN-LTSLPA---LPPELRTLEVSGNQ-LTSLPVL---PPGLLELSIFSN 272 (788)
T ss_pred CcEEEcCCCCCCcCCcchh--cCCCEEEccCCc-CCCCCC---CCCCCcEEEecCCc-cCcccCc---ccccceeeccCC
Confidence 3455655 5666776665 367777777776 777775 25677777777776 6677642 356777777755
Q ss_pred cccccccCCCcCCCCCCCCccCceEecCCCcccccCCchhhhccccCcceeeecccccccCCCCcchhhhcccccccccc
Q 001995 684 EWSRLSYMPRGMERLTGLRTLGAFVASGGKSSKACSSLKSLNKLKHLEGSLTLRGLGNERDLGDDNDDEKVDLKSKMKLV 763 (985)
Q Consensus 684 ~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~~~~l~~~~~L~ 763 (985)
.. ..+|... ++|+.|++..+..... . ..+++|+.| .+..+.+..+.. ...+|+
T Consensus 273 ~L---~~Lp~lp---~~L~~L~Ls~N~Lt~L---P---~~p~~L~~L--dLS~N~L~~Lp~-------------lp~~L~ 325 (788)
T PRK15387 273 PL---THLPALP---SGLCKLWIFGNQLTSL---P---VLPPGLQEL--SVSDNQLASLPA-------------LPSELC 325 (788)
T ss_pred ch---hhhhhch---hhcCEEECcCCccccc---c---cccccccee--ECCCCccccCCC-------------Cccccc
Confidence 43 3344321 3455555543322221 0 011233322 222222221111 012455
Q ss_pred cEEEEEcCCCCcchhHhhhcCCCCCCCCCeEEEeeccCCCCCCCChhhhccccccEEeEeccCCCCcCCCCCCCCcccee
Q 001995 764 DLHLRFDSTTKTKDHRVVLECLQPPSSLEKLGIYGYAGDTISPTSDWMLSLAKLRVLTLRFCNECECLPPLGKLPCLETL 843 (985)
Q Consensus 764 ~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L 843 (985)
.|.++.|.. ..++. .+.+|+.|++++|....+ |.. ..+|+.|++++|. +..+|.+ .++|+.|
T Consensus 326 ~L~Ls~N~L------~~LP~---lp~~Lq~LdLS~N~Ls~L---P~l---p~~L~~L~Ls~N~-L~~LP~l--~~~L~~L 387 (788)
T PRK15387 326 KLWAYNNQL------TSLPT---LPSGLQELSVSDNQLASL---PTL---PSELYKLWAYNNR-LTSLPAL--PSGLKEL 387 (788)
T ss_pred ccccccCcc------ccccc---cccccceEecCCCccCCC---CCC---Ccccceehhhccc-cccCccc--ccccceE
Confidence 666655441 01111 135788888888877766 432 3567778888774 4556653 3578888
Q ss_pred eccCCCCceEeCCcccCCchhhhhhhhhhhcccccccCCCCCccceeeccccccccccccccccCcccccccccceeecc
Q 001995 844 VLEGMSSVKRLGNGFLGIAEDHQARADQAETASSIIRDTAFPRLETLEFLDMEKWEEWDDCEIAGGKTIMPRLRHLSICW 923 (985)
Q Consensus 844 ~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~lp~L~~L~i~~ 923 (985)
+|+++. +..+|. ..++|+.|+++++ .+..++. .+.+|+.|++++
T Consensus 388 dLs~N~-Lt~LP~--------------------------l~s~L~~LdLS~N-~LssIP~--------l~~~L~~L~Ls~ 431 (788)
T PRK15387 388 IVSGNR-LTSLPV--------------------------LPSELKELMVSGN-RLTSLPM--------LPSGLLSLSVYR 431 (788)
T ss_pred EecCCc-ccCCCC--------------------------cccCCCEEEccCC-cCCCCCc--------chhhhhhhhhcc
Confidence 887754 444432 1357888998884 4555543 245788899988
Q ss_pred cccCCCCCCCCCCCCCcCeEEecCch
Q 001995 924 SPELKALPDYILGSTSLDKLLIYYSR 949 (985)
Q Consensus 924 c~~L~~lp~~~~~l~~L~~L~i~~c~ 949 (985)
| +++.+|..+..+++|+.|++++++
T Consensus 432 N-qLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 432 N-QLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred C-cccccChHHhhccCCCeEECCCCC
Confidence 6 688899888889999999999887
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.41 E-value=1e-14 Score=165.84 Aligned_cols=100 Identities=30% Similarity=0.420 Sum_probs=60.6
Q ss_pred CceEEEccCcCCcchhhhHHHhhccCCcceeecCC--CCCCCCcccccCCCCCeEecCCCCCccccchhhcCCCCCcEee
Q 001995 578 KLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL--PVGQIPKGIKKLIHLRYLALGENPWIKELPEALCELCNLQTLD 655 (985)
Q Consensus 578 ~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~--~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~ 655 (985)
+|++|+++++.. .. .|.-+..+..|+.|+++ .+..+|.+++++.+|+||.|.+|. +..+|.++..+++|+.||
T Consensus 46 ~L~~l~lsnn~~---~~-fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~-l~~lP~~~~~lknl~~Ld 120 (1081)
T KOG0618|consen 46 KLKSLDLSNNQI---SS-FPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNR-LQSLPASISELKNLQYLD 120 (1081)
T ss_pred eeEEeecccccc---cc-CCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccch-hhcCchhHHhhhcccccc
Confidence 366666666642 11 22334555666666666 466666666777777777776666 666777777777777777
Q ss_pred ccCcccccccchhhhhccccceeecccc
Q 001995 656 VSLCHYLKRLPERIGQLINLRHLMNSKE 683 (985)
Q Consensus 656 l~~~~~l~~lp~~i~~L~~L~~L~l~~~ 683 (985)
+++|. ....|.-+..++.+..+..++|
T Consensus 121 lS~N~-f~~~Pl~i~~lt~~~~~~~s~N 147 (1081)
T KOG0618|consen 121 LSFNH-FGPIPLVIEVLTAEEELAASNN 147 (1081)
T ss_pred cchhc-cCCCchhHHhhhHHHHHhhhcc
Confidence 77766 5555655555555544444433
No 16
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.40 E-value=3.2e-11 Score=153.22 Aligned_cols=276 Identities=15% Similarity=0.187 Sum_probs=171.6
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeC-CCCCHHHHHHHHHHHhcCCCCC-------------CCC
Q 001995 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVS-EPFDDIRIAKAILESLKGSATN-------------AVE 280 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~l~~~~~~-------------~~~ 280 (985)
..+++.|+|++|.||||++..+.+. ++.++|+++. ...+...+...++..+...... ..+
T Consensus 31 ~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 104 (903)
T PRK04841 31 NYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYAS 104 (903)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCC
Confidence 5689999999999999999998852 2368999986 4446666777777777421111 012
Q ss_pred HHHHHHHHHHHhc--CceEEEEecCCCCCCcccHHHHHhh-hcCCCCCcEEEEEcCchhhHH--hhcCcccccccCC---
Q 001995 281 SETVLKQLRESIE--GKKFFLVLDDVWTEEPQNWEQLLGC-LRCGSKESRILVTTRNEKVAI--AIGTTKFNIIPIE--- 352 (985)
Q Consensus 281 ~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~~~~~~l~~~-l~~~~~gs~ilvTtR~~~v~~--~~~~~~~~~~~l~--- 352 (985)
...+...+...+. +.+++|||||+...+......+... ++....+.++|||||...... .+... .....+.
T Consensus 105 ~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~l~~~-~~~~~l~~~~ 183 (903)
T PRK04841 105 LSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIANLRVR-DQLLEIGSQQ 183 (903)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchHhHHhc-CcceecCHHh
Confidence 2233333333332 6799999999977554444433333 344456678889999843211 11111 1244555
Q ss_pred -CCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHHHHHhhhhcCCC-hHHHHHHHHhhhhhhhcc-c
Q 001995 353 -LLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVKTLGSLLRFKGK-IEEWQRVLENELWELEEL-D 429 (985)
Q Consensus 353 -~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~~~~L~~~~~-~~~w~~~~~~~~~~~~~~-~ 429 (985)
+|+.+|+.++|........ ..+.+.+|.+.|+|.|+++..++..+..... .... .+.+... .
T Consensus 184 l~f~~~e~~~ll~~~~~~~~--------~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~~~~-------~~~~~~~~~ 248 (903)
T PRK04841 184 LAFDHQEAQQFFDQRLSSPI--------EAAESSRLCDDVEGWATALQLIALSARQNNSSLHDS-------ARRLAGINA 248 (903)
T ss_pred CCCCHHHHHHHHHhccCCCC--------CHHHHHHHHHHhCChHHHHHHHHHHHhhCCCchhhh-------hHhhcCCCc
Confidence 9999999999987543321 1234778999999999999998877754322 1111 0111111 1
Q ss_pred cccchhhh-cccCCCCcchhHHHhhhccCCCCcccChhHHHHHHhhcCcccccCccchhhHhHHHHHHHhhccccccccC
Q 001995 430 EGLLGPLL-LSYLDLPPPLKKCFSYCAIFPKDSRLEKDKLIRLWMAQDYLKVKGREDMVVGEGYFENLAMRSLFQDFERS 508 (985)
Q Consensus 430 ~~i~~~l~-~sy~~L~~~~k~cfl~~a~fp~~~~i~~~~Li~~Wiaeg~i~~~~~~~~~~~~~~~~~L~~r~ll~~~~~~ 508 (985)
..+...+. -.++.||++.+..++..|+++ .|+.+.+-.. .. .+.+...+++|...+++......
T Consensus 249 ~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~---~~~~~l~~~l------~~------~~~~~~~L~~l~~~~l~~~~~~~ 313 (903)
T PRK04841 249 SHLSDYLVEEVLDNVDLETRHFLLRCSVLR---SMNDALIVRV------TG------EENGQMRLEELERQGLFIQRMDD 313 (903)
T ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcccc---cCCHHHHHHH------cC------CCcHHHHHHHHHHCCCeeEeecC
Confidence 22444333 237899999999999999996 3443322211 11 13456789999999997532221
Q ss_pred CCCCCeEEEEecchHHHHHHHhhc
Q 001995 509 EHDGGKIISCQMHDMVHDFSQFLT 532 (985)
Q Consensus 509 ~~~~~~~~~~~mHdlv~d~~~~~~ 532 (985)
+ ...|++|++++++.....
T Consensus 314 ---~--~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 314 ---S--GEWFRYHPLFASFLRHRC 332 (903)
T ss_pred ---C--CCEEehhHHHHHHHHHHH
Confidence 1 123788999999987653
No 17
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.37 E-value=2.4e-13 Score=163.99 Aligned_cols=308 Identities=23% Similarity=0.198 Sum_probs=190.5
Q ss_pred ccCCCCceEEEccCcCCcchhhhHHHhhccCCcceeecCCC----CCCCCcc-cccCCCCCeEecCCCCCccccchhhcC
Q 001995 573 VYDETKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGLP----VGQIPKG-IKKLIHLRYLALGENPWIKELPEALCE 647 (985)
Q Consensus 573 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~----~~~lp~~-i~~l~~Lr~L~L~~~~~i~~lp~~i~~ 647 (985)
.......|.+.+.++.... .+. -...+.|++|-+.. +..++.. |..+++|++|||++|..+.+||++|++
T Consensus 519 ~~~~~~~rr~s~~~~~~~~----~~~-~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~ 593 (889)
T KOG4658|consen 519 VKSWNSVRRMSLMNNKIEH----IAG-SSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGE 593 (889)
T ss_pred ccchhheeEEEEeccchhh----ccC-CCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhh
Confidence 3455677777776664211 111 12333566666552 4555543 778999999999999889999999999
Q ss_pred CCCCcEeeccCcccccccchhhhhccccceeecccccccccccCCCcCCCCCCCCccCceEecCCCcccccCCchhhhcc
Q 001995 648 LCNLQTLDVSLCHYLKRLPERIGQLINLRHLMNSKEEWSRLSYMPRGMERLTGLRTLGAFVASGGKSSKACSSLKSLNKL 727 (985)
Q Consensus 648 L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~L~~L 727 (985)
|.+|++|+++++. +..+|.++.+|.+|.+|++.. ...+..+|..+..|++|++|.++...... +...+.++.+|
T Consensus 594 Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~--~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~---~~~~l~el~~L 667 (889)
T KOG4658|consen 594 LVHLRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEV--TGRLESIPGILLELQSLRVLRLPRSALSN---DKLLLKELENL 667 (889)
T ss_pred hhhhhcccccCCC-ccccchHHHHHHhhheecccc--ccccccccchhhhcccccEEEeecccccc---chhhHHhhhcc
Confidence 9999999999998 999999999999999999984 43444555555669999999987654221 22256666666
Q ss_pred ccCcceeeecccccccCCCCcchhhhcccccccccccEEEEEcCCCCcchhHhhhcCCCCCCCCCeEEEeeccCCCCCCC
Q 001995 728 KHLEGSLTLRGLGNERDLGDDNDDEKVDLKSKMKLVDLHLRFDSTTKTKDHRVVLECLQPPSSLEKLGIYGYAGDTISPT 807 (985)
Q Consensus 728 ~~L~~~L~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 807 (985)
++|+ .+.+..... .....+..+..|.+ ..+.+.+.++.....
T Consensus 668 e~L~-~ls~~~~s~---------~~~e~l~~~~~L~~-------------------------~~~~l~~~~~~~~~~--- 709 (889)
T KOG4658|consen 668 EHLE-NLSITISSV---------LLLEDLLGMTRLRS-------------------------LLQSLSIEGCSKRTL--- 709 (889)
T ss_pred cchh-hheeecchh---------HhHhhhhhhHHHHH-------------------------HhHhhhhccccccee---
Confidence 6554 333321100 00001111111111 112222222222223
Q ss_pred ChhhhccccccEEeEeccCCCCcCC-C-----CCC-CCccceeeccCCCCceEeCCcccCCchhhhhhhhhhhccccccc
Q 001995 808 SDWMLSLAKLRVLTLRFCNECECLP-P-----LGK-LPCLETLVLEGMSSVKRLGNGFLGIAEDHQARADQAETASSIIR 880 (985)
Q Consensus 808 p~~~~~l~~L~~L~L~~~~~~~~l~-~-----l~~-l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 880 (985)
+..+..+.+|+.|.+.+|...+... + ... +++|..+.+.+|..+..+...
T Consensus 710 ~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~----------------------- 766 (889)
T KOG4658|consen 710 ISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWL----------------------- 766 (889)
T ss_pred ecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchh-----------------------
Confidence 5666789999999999997654221 1 112 567777777777755443221
Q ss_pred CCCCCccceeeccccccccccccccccC-----cccccccccce-eecccccCCCCCCCCCCCCCcCeEEecCchhhhh
Q 001995 881 DTAFPRLETLEFLDMEKWEEWDDCEIAG-----GKTIMPRLRHL-SICWSPELKALPDYILGSTSLDKLLIYYSRHLNN 953 (985)
Q Consensus 881 ~~~fp~L~~L~l~~~~~L~~~~~~~~~~-----~~~~lp~L~~L-~i~~c~~L~~lp~~~~~l~~L~~L~i~~c~~l~~ 953 (985)
...|+|+.|.+.+|+.+++........ ....|+++..+ .+.+.+.+..+-..--..+.|..+.+..||++..
T Consensus 767 -~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~ 844 (889)
T KOG4658|consen 767 -LFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGK 844 (889)
T ss_pred -hccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccCccchhheehhcCccccc
Confidence 246899999999998888766532111 12356666666 4655555554321111233489999999998763
No 18
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.33 E-value=4.4e-10 Score=127.87 Aligned_cols=303 Identities=14% Similarity=0.112 Sum_probs=178.4
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 258 (985)
.++||++++++|...+..... +.....+.|+|++|+|||++++.++++.......-..+++++....
T Consensus 31 ~l~~Re~e~~~l~~~l~~~~~-------------~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~ 97 (394)
T PRK00411 31 NLPHREEQIEELAFALRPALR-------------GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDR 97 (394)
T ss_pred CCCCHHHHHHHHHHHHHHHhC-------------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCC
Confidence 799999999999999864320 2334567899999999999999999853222212346677777777
Q ss_pred CHHHHHHHHHHHhcCCC--CCCCCHHHHHHHHHHHhc--CceEEEEecCCCCCC----cccHHHHHhhhcCCCCCcE--E
Q 001995 259 DDIRIAKAILESLKGSA--TNAVESETVLKQLRESIE--GKKFFLVLDDVWTEE----PQNWEQLLGCLRCGSKESR--I 328 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~--~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~----~~~~~~l~~~l~~~~~gs~--i 328 (985)
+...++..++.++.+.. ....+.+++...+.+.+. +++.+||||+++... .+.+..+...+.. ..+++ +
T Consensus 98 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~v 176 (394)
T PRK00411 98 TRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGV 176 (394)
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEE
Confidence 88899999999997622 223355667777777765 467899999996532 1223333332221 22333 5
Q ss_pred EEEcCchhhHHhhcC-----cccccccCCCCChHHHHHHHHHHhcCCCC-CcccchhHHHHHHHHHHhcCCChhHHHHHH
Q 001995 329 LVTTRNEKVAIAIGT-----TKFNIIPIELLSDEDCWSIFSQLALSRRL-DIEESENFENIGRQIVSKCKGLPLAVKTLG 402 (985)
Q Consensus 329 lvTtR~~~v~~~~~~-----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~-~~~~~~~~~~~~~~I~~~~~GlPLai~~~~ 402 (985)
|.++....+...... .....+.+.+++.++..+++..++..... ....+...+.+++......|..+.|+..+-
T Consensus 177 I~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~ 256 (394)
T PRK00411 177 IGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLR 256 (394)
T ss_pred EEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 666665543332211 11246789999999999999887632210 101223333344444344566777777664
Q ss_pred hhh--h--c-CC--ChHHHHHHHHhhhhhhhccccccchhhhcccCCCCcchhHHHhhhccCCC--CcccChhHHHHH--
Q 001995 403 SLL--R--F-KG--KIEEWQRVLENELWELEELDEGLLGPLLLSYLDLPPPLKKCFSYCAIFPK--DSRLEKDKLIRL-- 471 (985)
Q Consensus 403 ~~L--~--~-~~--~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~a~fp~--~~~i~~~~Li~~-- 471 (985)
... + . .. +.+.....+.... .....-.+..||.+.|..+..++..-+ ...+....+...
T Consensus 257 ~a~~~a~~~~~~~I~~~~v~~a~~~~~----------~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~ 326 (394)
T PRK00411 257 RAGLIAEREGSRKVTEEDVRKAYEKSE----------IVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYK 326 (394)
T ss_pred HHHHHHHHcCCCCcCHHHHHHHHHHHH----------HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 332 1 1 11 4455555444320 112334578899988887766553321 133555555432
Q ss_pred HhhcCcccccCccchhhHhHHHHHHHhhcccccccc
Q 001995 472 WMAQDYLKVKGREDMVVGEGYFENLAMRSLFQDFER 507 (985)
Q Consensus 472 Wiaeg~i~~~~~~~~~~~~~~~~~L~~r~ll~~~~~ 507 (985)
.+++.+-. ...+...-..|+.+|...++|.....
T Consensus 327 ~l~~~~~~--~~~~~~~~~~~l~~L~~~glI~~~~~ 360 (394)
T PRK00411 327 ELCEELGY--EPRTHTRFYEYINKLDMLGIINTRYS 360 (394)
T ss_pred HHHHHcCC--CcCcHHHHHHHHHHHHhcCCeEEEEe
Confidence 23322110 01112344669999999999987543
No 19
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.24 E-value=2.6e-09 Score=120.32 Aligned_cols=304 Identities=15% Similarity=0.115 Sum_probs=172.6
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhh-ccC---CceEEEEe
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVR-NHF---NEKIWVCV 254 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-~~f---~~~~wv~~ 254 (985)
.++||++++++|..+|.... . +.....+.|+|++|+|||++++.+++..... ... -..+|+++
T Consensus 16 ~l~gRe~e~~~l~~~l~~~~----------~---~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~ 82 (365)
T TIGR02928 16 RIVHRDEQIEELAKALRPIL----------R---GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNC 82 (365)
T ss_pred CCCCcHHHHHHHHHHHHHHH----------c---CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEEC
Confidence 69999999999999987432 0 1344578999999999999999999842111 111 13568888
Q ss_pred CCCCCHHHHHHHHHHHhc---CCC-CCCCCHHHHHHHHHHHhc--CceEEEEecCCCCCC---cccHHHHHhhh-cCCC-
Q 001995 255 SEPFDDIRIAKAILESLK---GSA-TNAVESETVLKQLRESIE--GKKFFLVLDDVWTEE---PQNWEQLLGCL-RCGS- 323 (985)
Q Consensus 255 ~~~~~~~~~~~~i~~~l~---~~~-~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~---~~~~~~l~~~l-~~~~- 323 (985)
....+...++..|+.++. ... ....+..+....+.+.+. +++++||||+++... ......+.... ....
T Consensus 83 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~ 162 (365)
T TIGR02928 83 QILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLD 162 (365)
T ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCC
Confidence 777788899999999984 221 122344555555656553 568999999996541 11122222211 0111
Q ss_pred -CCcEEEEEcCchhhHHhhc-----CcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhH
Q 001995 324 -KESRILVTTRNEKVAIAIG-----TTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLA 397 (985)
Q Consensus 324 -~gs~ilvTtR~~~v~~~~~-----~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLa 397 (985)
....+|.+|........+. ......+.+.+++.++..+++..++..........++..+...+++....|.|-.
T Consensus 163 ~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~ 242 (365)
T TIGR02928 163 NAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARK 242 (365)
T ss_pred CCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHH
Confidence 2234455554443222111 1112468899999999999999876411111012233334555677777788844
Q ss_pred H-HHHHhhh--h--c-C--CChHHHHHHHHhhhhhhhccccccchhhhcccCCCCcchhHHHhhhccCC--CCcccChhH
Q 001995 398 V-KTLGSLL--R--F-K--GKIEEWQRVLENELWELEELDEGLLGPLLLSYLDLPPPLKKCFSYCAIFP--KDSRLEKDK 467 (985)
Q Consensus 398 i-~~~~~~L--~--~-~--~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~a~fp--~~~~i~~~~ 467 (985)
+ ..+-... . . . -+.+.......... .....-++..||.+.+..+..++..- .+..+...+
T Consensus 243 al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~~----------~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~ 312 (365)
T TIGR02928 243 AIDLLRVAGEIAEREGAERVTEDHVEKAQEKIE----------KDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGE 312 (365)
T ss_pred HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH----------HHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHH
Confidence 3 3322211 1 1 1 13344443333210 11223456788888887666554321 334466666
Q ss_pred HHHHHh--hcCcccccCccchhhHhHHHHHHHhhcccccccc
Q 001995 468 LIRLWM--AQDYLKVKGREDMVVGEGYFENLAMRSLFQDFER 507 (985)
Q Consensus 468 Li~~Wi--aeg~i~~~~~~~~~~~~~~~~~L~~r~ll~~~~~ 507 (985)
+...+- ++.+ . ...........++..|...|++.....
T Consensus 313 ~~~~y~~~~~~~-~-~~~~~~~~~~~~l~~l~~~gli~~~~~ 352 (365)
T TIGR02928 313 VYEVYKEVCEDI-G-VDPLTQRRISDLLNELDMLGLVEAEER 352 (365)
T ss_pred HHHHHHHHHHhc-C-CCCCcHHHHHHHHHHHHhcCCeEEEEE
Confidence 665321 2211 1 111222556778999999999987643
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.23 E-value=1.4e-11 Score=146.76 Aligned_cols=89 Identities=24% Similarity=0.359 Sum_probs=52.7
Q ss_pred ceeecCC--CCCCCCcccccCCCCCeEecCCCCCccccchhhcCCCCCcEeeccCcccccccchhhhhccccceeecccc
Q 001995 606 LRSIDGL--PVGQIPKGIKKLIHLRYLALGENPWIKELPEALCELCNLQTLDVSLCHYLKRLPERIGQLINLRHLMNSKE 683 (985)
Q Consensus 606 Lr~L~l~--~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~ 683 (985)
...|+++ .+..+|..+. .+|+.|+|++|. ++.+|..+. .+|++|++++|. +..+|..+. .+|+.|++++|
T Consensus 180 ~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~-LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~l~--~~L~~L~Ls~N 251 (754)
T PRK15370 180 KTELRLKILGLTTIPACIP--EQITTLILDNNE-LKSLPENLQ--GNIKTLYANSNQ-LTSIPATLP--DTIQEMELSIN 251 (754)
T ss_pred ceEEEeCCCCcCcCCcccc--cCCcEEEecCCC-CCcCChhhc--cCCCEEECCCCc-cccCChhhh--ccccEEECcCC
Confidence 3455554 4555665543 367777777776 777776554 477777777766 666766543 36777777744
Q ss_pred cccccccCCCcCCCCCCCCccCce
Q 001995 684 EWSRLSYMPRGMERLTGLRTLGAF 707 (985)
Q Consensus 684 ~~~~l~~lp~~i~~l~~L~~L~~~ 707 (985)
. +..+|..+. ++|+.|++.
T Consensus 252 ~---L~~LP~~l~--s~L~~L~Ls 270 (754)
T PRK15370 252 R---ITELPERLP--SALQSLDLF 270 (754)
T ss_pred c---cCcCChhHh--CCCCEEECc
Confidence 3 345555442 355555553
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.23 E-value=3.3e-13 Score=123.39 Aligned_cols=133 Identities=21% Similarity=0.338 Sum_probs=112.0
Q ss_pred cccCCCCceEEEccCcCCcchhhhHHHhhccCCcceeecCC--CCCCCCcccccCCCCCeEecCCCCCccccchhhcCCC
Q 001995 572 MVYDETKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL--PVGQIPKGIKKLIHLRYLALGENPWIKELPEALCELC 649 (985)
Q Consensus 572 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~--~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp~~i~~L~ 649 (985)
.+.++++...|.++.+.. .. .+.-+..+++|.+|+++ .+.++|.+|+.|++||.|++.-|. +..+|..++.++
T Consensus 28 gLf~~s~ITrLtLSHNKl---~~-vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p 102 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKL---TV-VPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNR-LNILPRGFGSFP 102 (264)
T ss_pred cccchhhhhhhhcccCce---ee-cCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhh-hhcCccccCCCc
Confidence 345677788888888753 22 33337788999999998 789999999999999999999998 899999999999
Q ss_pred CCcEeeccCcccc--cccchhhhhccccceeecccccccccccCCCcCCCCCCCCccCceEecCCC
Q 001995 650 NLQTLDVSLCHYL--KRLPERIGQLINLRHLMNSKEEWSRLSYMPRGMERLTGLRTLGAFVASGGK 713 (985)
Q Consensus 650 ~L~~L~l~~~~~l--~~lp~~i~~L~~L~~L~l~~~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~ 713 (985)
-|+.|||.+|+ + ..+|..+..|+.|+-|++++|++ +.+|..++++++||.|.+..++...
T Consensus 103 ~levldltynn-l~e~~lpgnff~m~tlralyl~dndf---e~lp~dvg~lt~lqil~lrdndll~ 164 (264)
T KOG0617|consen 103 ALEVLDLTYNN-LNENSLPGNFFYMTTLRALYLGDNDF---EILPPDVGKLTNLQILSLRDNDLLS 164 (264)
T ss_pred hhhhhhccccc-cccccCCcchhHHHHHHHHHhcCCCc---ccCChhhhhhcceeEEeeccCchhh
Confidence 99999999987 4 46898999999999999997766 7899999999999999887665444
No 22
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.20 E-value=1.2e-09 Score=117.43 Aligned_cols=185 Identities=18% Similarity=0.200 Sum_probs=117.5
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH---
Q 001995 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRES--- 291 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~--- 291 (985)
+..++.|+|++|+||||+++.+++.... ..+ ...|+ +....+..+++..|+..++.... ..+.......+.+.
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~-~~~~~~~~~~l~~~l~~ 117 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRLDQ-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLETE-GRDKAALLRELEDFLIE 117 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHhcCC-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCC-CCCHHHHHHHHHHHHHH
Confidence 3468999999999999999999984221 111 12233 33456778889999988865432 23333333333332
Q ss_pred --hcCceEEEEecCCCCCCcccHHHHHhhhcC---CCCCcEEEEEcCchhhHHhhc--------CcccccccCCCCChHH
Q 001995 292 --IEGKKFFLVLDDVWTEEPQNWEQLLGCLRC---GSKESRILVTTRNEKVAIAIG--------TTKFNIIPIELLSDED 358 (985)
Q Consensus 292 --l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~---~~~gs~ilvTtR~~~v~~~~~--------~~~~~~~~l~~L~~~e 358 (985)
..+++.+||+||+|......++.+...... ......|++|.... ....+. ......+++++++.+|
T Consensus 118 ~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e 196 (269)
T TIGR03015 118 QFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREE 196 (269)
T ss_pred HHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHH
Confidence 257889999999988766666666543321 12223456665533 221211 1112467899999999
Q ss_pred HHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHHHHHhhh
Q 001995 359 CWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVKTLGSLL 405 (985)
Q Consensus 359 ~~~Lf~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~~~~L 405 (985)
..+++...+...+.. ....-..+..+.|++.++|.|..|..++..+
T Consensus 197 ~~~~l~~~l~~~g~~-~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 197 TREYIEHRLERAGNR-DAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHcCCC-CCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 999998776433211 1112234678999999999999999988876
No 23
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.20 E-value=3.5e-11 Score=142.28 Aligned_cols=107 Identities=21% Similarity=0.187 Sum_probs=55.9
Q ss_pred EEEEEcCCCCCccCCCccccCCCCceEEEccCcCCcchhhhHHHhhccCCcceeecCC--CCCCCCcccccCCCCCeEec
Q 001995 555 HLMITGETRSEMVPFPSMVYDETKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL--PVGQIPKGIKKLIHLRYLAL 632 (985)
Q Consensus 555 ~l~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~--~~~~lp~~i~~l~~Lr~L~L 632 (985)
.+.+..+.+. .+|..+. ++|+.|.+.+|... . +|. ..++|++|+++ .+..+|.. ..+|+.|++
T Consensus 205 ~LdLs~~~Lt---sLP~~l~--~~L~~L~L~~N~Lt---~-LP~---lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~L 269 (788)
T PRK15387 205 VLNVGESGLT---TLPDCLP--AHITTLVIPDNNLT---S-LPA---LPPELRTLEVSGNQLTSLPVL---PPGLLELSI 269 (788)
T ss_pred EEEcCCCCCC---cCCcchh--cCCCEEEccCCcCC---C-CCC---CCCCCcEEEecCCccCcccCc---ccccceeec
Confidence 4555555442 2344332 36777777766421 1 121 23456666665 44455532 245666666
Q ss_pred CCCCCccccchhhcCCCCCcEeeccCcccccccchhhhhccccceeeccccc
Q 001995 633 GENPWIKELPEALCELCNLQTLDVSLCHYLKRLPERIGQLINLRHLMNSKEE 684 (985)
Q Consensus 633 ~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~ 684 (985)
++|. +..+|.. +.+|+.|++++|. +..+|.. +++|++|++++|.
T Consensus 270 s~N~-L~~Lp~l---p~~L~~L~Ls~N~-Lt~LP~~---p~~L~~LdLS~N~ 313 (788)
T PRK15387 270 FSNP-LTHLPAL---PSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQ 313 (788)
T ss_pred cCCc-hhhhhhc---hhhcCEEECcCCc-ccccccc---ccccceeECCCCc
Confidence 6665 6666542 2455666666665 5566542 3556666666543
No 24
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.14 E-value=2.1e-12 Score=118.25 Aligned_cols=160 Identities=22% Similarity=0.289 Sum_probs=91.1
Q ss_pred ccCCCCCeEecCCCCCccccchhhcCCCCCcEeeccCcccccccchhhhhccccceeecccccccccccCCCcCCCCCCC
Q 001995 622 KKLIHLRYLALGENPWIKELPEALCELCNLQTLDVSLCHYLKRLPERIGQLINLRHLMNSKEEWSRLSYMPRGMERLTGL 701 (985)
Q Consensus 622 ~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~l~~lp~~i~~l~~L 701 (985)
..+.+...|.|++|+ +..+|+.|..|.+|+.|++.+|. ++++|..|+.|++|++|+++ ..++..+|.|+|.++.|
T Consensus 30 f~~s~ITrLtLSHNK-l~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvg---mnrl~~lprgfgs~p~l 104 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNK-LTVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVG---MNRLNILPRGFGSFPAL 104 (264)
T ss_pred cchhhhhhhhcccCc-eeecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecc---hhhhhcCccccCCCchh
Confidence 344555566677776 66777777777777777777666 77777777777777777765 33445667777777777
Q ss_pred CccCceEecCCCcccccCCchhhhccccCcceeeecccccccCCCCcchhhhcccccccccccEEEEEcCCCCcchhHhh
Q 001995 702 RTLGAFVASGGKSSKACSSLKSLNKLKHLEGSLTLRGLGNERDLGDDNDDEKVDLKSKMKLVDLHLRFDSTTKTKDHRVV 781 (985)
Q Consensus 702 ~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 781 (985)
+.|++..+..... .....+-.+. -|+-|.++.++ .+.+
T Consensus 105 evldltynnl~e~-~lpgnff~m~-----------------------------------tlralyl~dnd------fe~l 142 (264)
T KOG0617|consen 105 EVLDLTYNNLNEN-SLPGNFFYMT-----------------------------------TLRALYLGDND------FEIL 142 (264)
T ss_pred hhhhccccccccc-cCCcchhHHH-----------------------------------HHHHHHhcCCC------cccC
Confidence 6666643322210 0000111222 22222222221 1222
Q ss_pred hcCCCCCCCCCeEEEeeccCCCCCCCChhhhccccccEEeEeccCCCCcCC
Q 001995 782 LECLQPPSSLEKLGIYGYAGDTISPTSDWMLSLAKLRVLTLRFCNECECLP 832 (985)
Q Consensus 782 ~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~ 832 (985)
+..+..+.+|+.|.+..|....+ |..++.+..|+.|.+-+| .+..+|
T Consensus 143 p~dvg~lt~lqil~lrdndll~l---pkeig~lt~lrelhiqgn-rl~vlp 189 (264)
T KOG0617|consen 143 PPDVGKLTNLQILSLRDNDLLSL---PKEIGDLTRLRELHIQGN-RLTVLP 189 (264)
T ss_pred ChhhhhhcceeEEeeccCchhhC---cHHHHHHHHHHHHhcccc-eeeecC
Confidence 33334455666666666665555 777777888888888777 445554
No 25
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.10 E-value=2.1e-10 Score=120.54 Aligned_cols=196 Identities=22% Similarity=0.276 Sum_probs=101.2
Q ss_pred eecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCC
Q 001995 180 IRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFD 259 (985)
Q Consensus 180 ~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 259 (985)
|+||++|+++|.+++..+ ..+.+.|+|+.|+|||+|++++.+. .+..-..++|+.......
T Consensus 1 F~gR~~el~~l~~~l~~~-----------------~~~~~~l~G~rg~GKTsLl~~~~~~--~~~~~~~~~y~~~~~~~~ 61 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG-----------------PSQHILLYGPRGSGKTSLLKEFINE--LKEKGYKVVYIDFLEESN 61 (234)
T ss_dssp S-S-HHHHHHHHHCHHH-------------------SSEEEEEESTTSSHHHHHHHHHHH--CT--EECCCHHCCTTBSH
T ss_pred CCCHHHHHHHHHHHHHhh-----------------cCcEEEEEcCCcCCHHHHHHHHHHH--hhhcCCcEEEEecccchh
Confidence 789999999999998743 3468999999999999999999983 322211344554443332
Q ss_pred HHHHHHHH----------HHHhc----CCCC------CCCCHHHHHHHHHHHhc--CceEEEEecCCCCCC------ccc
Q 001995 260 DIRIAKAI----------LESLK----GSAT------NAVESETVLKQLRESIE--GKKFFLVLDDVWTEE------PQN 311 (985)
Q Consensus 260 ~~~~~~~i----------~~~l~----~~~~------~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~------~~~ 311 (985)
. .....+ ...+. .... ...........+.+.+. +++++||+||+.... ...
T Consensus 62 ~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~ 140 (234)
T PF01637_consen 62 E-SSLRSFIEETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDF 140 (234)
T ss_dssp H-HHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHH
T ss_pred h-hHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHH
Confidence 2 222222 11121 1110 01111222233333332 456999999995433 111
Q ss_pred HHHHHhhhcC---CCCCcEEEEEcCchhhHHh-hcC-----cccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHH
Q 001995 312 WEQLLGCLRC---GSKESRILVTTRNEKVAIA-IGT-----TKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFEN 382 (985)
Q Consensus 312 ~~~l~~~l~~---~~~gs~ilvTtR~~~v~~~-~~~-----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~ 382 (985)
...+...+.. ..+.+ +++++-...+... ... .....+.+++|+.+++++++....... . .. +...+
T Consensus 141 ~~~l~~~~~~~~~~~~~~-~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~--~~-~~~~~ 215 (234)
T PF01637_consen 141 LKSLRSLLDSLLSQQNVS-IVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-I--KL-PFSDE 215 (234)
T ss_dssp HHHHHHHHHH----TTEE-EEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC----------HH
T ss_pred HHHHHHHHhhccccCCce-EEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-h--cc-cCCHH
Confidence 2233333332 33334 4444444433332 110 112459999999999999999865332 1 11 22345
Q ss_pred HHHHHHHhcCCChhHHHH
Q 001995 383 IGRQIVSKCKGLPLAVKT 400 (985)
Q Consensus 383 ~~~~I~~~~~GlPLai~~ 400 (985)
..++|+..+||+|..|..
T Consensus 216 ~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 216 DIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp HHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHhCCCHHHHhc
Confidence 579999999999998864
No 26
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.08 E-value=2.1e-09 Score=118.30 Aligned_cols=277 Identities=18% Similarity=0.167 Sum_probs=148.6
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 258 (985)
+|+|+++.++.+..++..... . ......+.|+|++|+||||+|+.+++. ....+ .++... ..
T Consensus 26 ~~vG~~~~~~~l~~~l~~~~~----------~--~~~~~~~ll~GppG~GKT~la~~ia~~--l~~~~---~~~~~~-~~ 87 (328)
T PRK00080 26 EFIGQEKVKENLKIFIEAAKK----------R--GEALDHVLLYGPPGLGKTTLANIIANE--MGVNI---RITSGP-AL 87 (328)
T ss_pred HhcCcHHHHHHHHHHHHHHHh----------c--CCCCCcEEEECCCCccHHHHHHHHHHH--hCCCe---EEEecc-cc
Confidence 799999999999888864220 0 234567889999999999999999983 32221 122211 11
Q ss_pred CHHHHHHHHHHHhcCCCC------CCCCHHHHHHHHHHHhcCceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEEEEEc
Q 001995 259 DDIRIAKAILESLKGSAT------NAVESETVLKQLRESIEGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRILVTT 332 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~------~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt 332 (985)
.....+..++..+..... +... ....+.+...+.+.+..+|+|+..+... +...+ .+.+-|..|+
T Consensus 88 ~~~~~l~~~l~~l~~~~vl~IDEi~~l~-~~~~e~l~~~~e~~~~~~~l~~~~~~~~-----~~~~l---~~~~li~at~ 158 (328)
T PRK00080 88 EKPGDLAAILTNLEEGDVLFIDEIHRLS-PVVEEILYPAMEDFRLDIMIGKGPAARS-----IRLDL---PPFTLIGATT 158 (328)
T ss_pred cChHHHHHHHHhcccCCEEEEecHhhcc-hHHHHHHHHHHHhcceeeeeccCccccc-----eeecC---CCceEEeecC
Confidence 222222333333221100 0000 0112223333344444444444322110 00011 1234566777
Q ss_pred CchhhHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHHHHHhhhhcCCChH
Q 001995 333 RNEKVAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVKTLGSLLRFKGKIE 412 (985)
Q Consensus 333 R~~~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~~~~L~~~~~~~ 412 (985)
+...+...+...-...+++++++.++..+++.+.+...... -..+.+..|++.|+|.|-.+..+...+.
T Consensus 159 ~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~-----~~~~~~~~ia~~~~G~pR~a~~~l~~~~------ 227 (328)
T PRK00080 159 RAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVE-----IDEEGALEIARRSRGTPRIANRLLRRVR------ 227 (328)
T ss_pred CcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCC-----cCHHHHHHHHHHcCCCchHHHHHHHHHH------
Confidence 75544433211101468999999999999999887654322 1235688999999999965554444331
Q ss_pred HHHHHHHhhhhhhh-ccccccchhhhcccCCCCcchhHHHh-hhccCCCCcccChhHHHHHHhhcCcccccCccchhhHh
Q 001995 413 EWQRVLENELWELE-ELDEGLLGPLLLSYLDLPPPLKKCFS-YCAIFPKDSRLEKDKLIRLWMAQDYLKVKGREDMVVGE 490 (985)
Q Consensus 413 ~w~~~~~~~~~~~~-~~~~~i~~~l~~sy~~L~~~~k~cfl-~~a~fp~~~~i~~~~Li~~Wiaeg~i~~~~~~~~~~~~ 490 (985)
.|...... .... +.-......+...+..|++..+..+. ....|+.+ .+..+.+.... +.+...++
T Consensus 228 ~~a~~~~~--~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l----------g~~~~~~~ 294 (328)
T PRK00080 228 DFAQVKGD--GVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL----------GEERDTIE 294 (328)
T ss_pred HHHHHcCC--CCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH----------CCCcchHH
Confidence 12111100 0000 00012334456778889888888775 66677655 46665554332 22235566
Q ss_pred HHHH-HHHhhccccccc
Q 001995 491 GYFE-NLAMRSLFQDFE 506 (985)
Q Consensus 491 ~~~~-~L~~r~ll~~~~ 506 (985)
+.++ .|++.+|++...
T Consensus 295 ~~~e~~Li~~~li~~~~ 311 (328)
T PRK00080 295 DVYEPYLIQQGFIQRTP 311 (328)
T ss_pred HHhhHHHHHcCCcccCC
Confidence 6677 899999997443
No 27
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.07 E-value=2e-10 Score=136.89 Aligned_cols=243 Identities=19% Similarity=0.223 Sum_probs=133.4
Q ss_pred eEEEEEEcCCCCCccCCCccccCCCCceEEEccCcCCcchhhhHHHhhccCCcceeecCC--CCCCCCcccccCCCCCeE
Q 001995 553 ARHLMITGETRSEMVPFPSMVYDETKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL--PVGQIPKGIKKLIHLRYL 630 (985)
Q Consensus 553 ~r~l~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~--~~~~lp~~i~~l~~Lr~L 630 (985)
...+.+..... ..+|..+ .+.++.|++++|.. .. ++..+ +.+|+.|+++ .+..+|..+. .+|+.|
T Consensus 180 ~~~L~L~~~~L---tsLP~~I--p~~L~~L~Ls~N~L---ts-LP~~l--~~nL~~L~Ls~N~LtsLP~~l~--~~L~~L 246 (754)
T PRK15370 180 KTELRLKILGL---TTIPACI--PEQITTLILDNNEL---KS-LPENL--QGNIKTLYANSNQLTSIPATLP--DTIQEM 246 (754)
T ss_pred ceEEEeCCCCc---CcCCccc--ccCCcEEEecCCCC---Cc-CChhh--ccCCCEEECCCCccccCChhhh--ccccEE
Confidence 34555555544 2233332 24678888877753 22 22212 2366777776 4556665443 357777
Q ss_pred ecCCCCCccccchhhcCCCCCcEeeccCcccccccchhhhhccccceeecccccccccccCCCcCCCCCCCCccCceEec
Q 001995 631 ALGENPWIKELPEALCELCNLQTLDVSLCHYLKRLPERIGQLINLRHLMNSKEEWSRLSYMPRGMERLTGLRTLGAFVAS 710 (985)
Q Consensus 631 ~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~l~~lp~~i~~l~~L~~L~~~~~~ 710 (985)
+|++|. +..+|..+. .+|+.|++++|+ +..+|..+. .+|++|++++|. +..+|..+. ++|+.|++..+.
T Consensus 247 ~Ls~N~-L~~LP~~l~--s~L~~L~Ls~N~-L~~LP~~l~--~sL~~L~Ls~N~---Lt~LP~~lp--~sL~~L~Ls~N~ 315 (754)
T PRK15370 247 ELSINR-ITELPERLP--SALQSLDLFHNK-ISCLPENLP--EELRYLSVYDNS---IRTLPAHLP--SGITHLNVQSNS 315 (754)
T ss_pred ECcCCc-cCcCChhHh--CCCCEEECcCCc-cCccccccC--CCCcEEECCCCc---cccCcccch--hhHHHHHhcCCc
Confidence 777777 667776554 467777777665 666776553 467777777443 344554332 244444443221
Q ss_pred CCCcccccCCchhhhccccCcceeeecccccccCCCCcchhhhcccccccccccEEEEEcCCCCcchhHhhhcCCCCCCC
Q 001995 711 GGKSSKACSSLKSLNKLKHLEGSLTLRGLGNERDLGDDNDDEKVDLKSKMKLVDLHLRFDSTTKTKDHRVVLECLQPPSS 790 (985)
Q Consensus 711 ~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~ 790 (985)
... ++ . ...++|+.|.++.|... .++..+ +++
T Consensus 316 Lt~----------LP------------------~------------~l~~sL~~L~Ls~N~Lt------~LP~~l--~~s 347 (754)
T PRK15370 316 LTA----------LP------------------E------------TLPPGLKTLEAGENALT------SLPASL--PPE 347 (754)
T ss_pred ccc----------CC------------------c------------cccccceeccccCCccc------cCChhh--cCc
Confidence 111 00 0 00124555555544311 111122 257
Q ss_pred CCeEEEeeccCCCCCCCChhhhccccccEEeEeccCCCCcCCC-CCCCCccceeeccCCCCceEeCCcccCCchhhhhhh
Q 001995 791 LEKLGIYGYAGDTISPTSDWMLSLAKLRVLTLRFCNECECLPP-LGKLPCLETLVLEGMSSVKRLGNGFLGIAEDHQARA 869 (985)
Q Consensus 791 L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~ 869 (985)
|+.|++++|....+ |..+ .++|+.|+|++|. +..+|. +. ++|+.|++++|. +..+|..+...
T Consensus 348 L~~L~Ls~N~L~~L---P~~l--p~~L~~LdLs~N~-Lt~LP~~l~--~sL~~LdLs~N~-L~~LP~sl~~~-------- 410 (754)
T PRK15370 348 LQVLDVSKNQITVL---PETL--PPTITTLDVSRNA-LTNLPENLP--AALQIMQASRNN-LVRLPESLPHF-------- 410 (754)
T ss_pred ccEEECCCCCCCcC---Chhh--cCCcCEEECCCCc-CCCCCHhHH--HHHHHHhhccCC-cccCchhHHHH--------
Confidence 88888888876655 6554 3678888888884 445553 22 368888888754 66666543221
Q ss_pred hhhhcccccccCCCCCccceeecccc
Q 001995 870 DQAETASSIIRDTAFPRLETLEFLDM 895 (985)
Q Consensus 870 ~~~~~~~~~~~~~~fp~L~~L~l~~~ 895 (985)
...+|++..|.+.+.
T Consensus 411 -----------~~~~~~l~~L~L~~N 425 (754)
T PRK15370 411 -----------RGEGPQPTRIIVEYN 425 (754)
T ss_pred -----------hhcCCCccEEEeeCC
Confidence 123577788887763
No 28
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.07 E-value=2.3e-08 Score=114.88 Aligned_cols=282 Identities=18% Similarity=0.209 Sum_probs=180.8
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCC-CCHHHHHHHHHHHhcCCCC-------------CCC
Q 001995 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEP-FDDIRIAKAILESLKGSAT-------------NAV 279 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~-------------~~~ 279 (985)
.+.+.+.|..++|.|||||+.+... ....=..+.|.+..+. -++..+...++..+..-.+ ...
T Consensus 35 ~~~RL~li~APAGfGKttl~aq~~~---~~~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~ 111 (894)
T COG2909 35 NDYRLILISAPAGFGKTTLLAQWRE---LAADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDEAQTLLQKHQYV 111 (894)
T ss_pred CCceEEEEeCCCCCcHHHHHHHHHH---hcCcccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHHHHHHHHhcccc
Confidence 4789999999999999999999874 1222346899998654 5677788888888763221 122
Q ss_pred CHHHHHHHHHHHhc--CceEEEEecCCCCCCcccHHH-HHhhhcCCCCCcEEEEEcCchhhHHhhcCc-ccccccCC---
Q 001995 280 ESETVLKQLRESIE--GKKFFLVLDDVWTEEPQNWEQ-LLGCLRCGSKESRILVTTRNEKVAIAIGTT-KFNIIPIE--- 352 (985)
Q Consensus 280 ~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~~~~~~-l~~~l~~~~~gs~ilvTtR~~~v~~~~~~~-~~~~~~l~--- 352 (985)
+...+...+...+. .++..+||||..-........ +...+.....+-..|||||...-....... ....+++.
T Consensus 112 ~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la~lRlr~~llEi~~~~ 191 (894)
T COG2909 112 SLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLARLRLRDELLEIGSEE 191 (894)
T ss_pred cHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCcccceeehhhHHhcChHh
Confidence 33344444444443 568999999986544334433 444455666788999999987533221110 01233333
Q ss_pred -CCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHHHHHhhhhcCCChHHHHHHHHhhhhhhhccccc
Q 001995 353 -LLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVKTLGSLLRFKGKIEEWQRVLENELWELEELDEG 431 (985)
Q Consensus 353 -~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~~~~L~~~~~~~~w~~~~~~~~~~~~~~~~~ 431 (985)
.|+.+|+.++|.......- .+..++.+.+..+|-+-|+..++=.++.+.+.+.-...+.. ..+.
T Consensus 192 Lrf~~eE~~~fl~~~~~l~L--------d~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~LsG-------~~~~ 256 (894)
T COG2909 192 LRFDTEEAAAFLNDRGSLPL--------DAADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRGLSG-------AASH 256 (894)
T ss_pred hcCChHHHHHHHHHcCCCCC--------ChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhhccc-------hHHH
Confidence 5899999999988652221 12347889999999999999999888844444333332221 1111
Q ss_pred cchh-hhcccCCCCcchhHHHhhhccCCCCcccChhHHHHHHhhcCcccccCccchhhHhHHHHHHHhhccccccccCCC
Q 001995 432 LLGP-LLLSYLDLPPPLKKCFSYCAIFPKDSRLEKDKLIRLWMAQDYLKVKGREDMVVGEGYFENLAMRSLFQDFERSEH 510 (985)
Q Consensus 432 i~~~-l~~sy~~L~~~~k~cfl~~a~fp~~~~i~~~~Li~~Wiaeg~i~~~~~~~~~~~~~~~~~L~~r~ll~~~~~~~~ 510 (985)
+..- ..--++.||+++|..++-||+++.= . ..|+..- .+ .+.+...+++|.+++|+-..-++..
T Consensus 257 l~dYL~eeVld~Lp~~l~~FLl~~svl~~f---~-~eL~~~L---------tg--~~ng~amLe~L~~~gLFl~~Ldd~~ 321 (894)
T COG2909 257 LSDYLVEEVLDRLPPELRDFLLQTSVLSRF---N-DELCNAL---------TG--EENGQAMLEELERRGLFLQRLDDEG 321 (894)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhHHHh---h-HHHHHHH---------hc--CCcHHHHHHHHHhCCCceeeecCCC
Confidence 1111 1234688999999999999999641 1 2222211 11 1456778999999999875444332
Q ss_pred CCCeEEEEecchHHHHHHHhhcc
Q 001995 511 DGGKIISCQMHDMVHDFSQFLTK 533 (985)
Q Consensus 511 ~~~~~~~~~mHdlv~d~~~~~~~ 533 (985)
..|+.|.+..||...-..
T Consensus 322 -----~WfryH~LFaeFL~~r~~ 339 (894)
T COG2909 322 -----QWFRYHHLFAEFLRQRLQ 339 (894)
T ss_pred -----ceeehhHHHHHHHHhhhc
Confidence 248999999999876543
No 29
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.05 E-value=2.3e-09 Score=117.34 Aligned_cols=276 Identities=18% Similarity=0.150 Sum_probs=147.4
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 258 (985)
+|+|+++.+++|..++..... . ......+.|+|++|+|||+||+.+++. ....+ ..+..+...
T Consensus 5 ~~iG~~~~~~~l~~~l~~~~~----------~--~~~~~~~ll~Gp~G~GKT~la~~ia~~--~~~~~---~~~~~~~~~ 67 (305)
T TIGR00635 5 EFIGQEKVKEQLQLFIEAAKM----------R--QEALDHLLLYGPPGLGKTTLAHIIANE--MGVNL---KITSGPALE 67 (305)
T ss_pred HHcCHHHHHHHHHHHHHHHHh----------c--CCCCCeEEEECCCCCCHHHHHHHHHHH--hCCCE---EEeccchhc
Confidence 799999999999998864320 0 133456889999999999999999983 32222 112211111
Q ss_pred CHHHHHHHHHHHhcCCC------CCCCCHHHHHHHHHHHhcCceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEEEEEc
Q 001995 259 DDIRIAKAILESLKGSA------TNAVESETVLKQLRESIEGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRILVTT 332 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~------~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt 332 (985)
. ...+...+..+.... .+... ....+.+...+.+.+..+|+|+..... .+ ...+ .+.+-|..||
T Consensus 68 ~-~~~l~~~l~~~~~~~vl~iDEi~~l~-~~~~e~l~~~~~~~~~~~v~~~~~~~~--~~---~~~~---~~~~li~~t~ 137 (305)
T TIGR00635 68 K-PGDLAAILTNLEEGDVLFIDEIHRLS-PAVEELLYPAMEDFRLDIVIGKGPSAR--SV---RLDL---PPFTLVGATT 137 (305)
T ss_pred C-chhHHHHHHhcccCCEEEEehHhhhC-HHHHHHhhHHHhhhheeeeeccCcccc--ce---eecC---CCeEEEEecC
Confidence 1 112222222222111 00001 112233444445555555665543211 11 0111 1244566677
Q ss_pred CchhhHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHHHHHhhhhcCCChH
Q 001995 333 RNEKVAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVKTLGSLLRFKGKIE 412 (985)
Q Consensus 333 R~~~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~~~~L~~~~~~~ 412 (985)
+...+...+...-...+++++++.++..+++.+.+...... -..+....|++.|+|.|-.+..++..+..
T Consensus 138 ~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~-----~~~~al~~ia~~~~G~pR~~~~ll~~~~~----- 207 (305)
T TIGR00635 138 RAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVE-----IEPEAALEIARRSRGTPRIANRLLRRVRD----- 207 (305)
T ss_pred CccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCC-----cCHHHHHHHHHHhCCCcchHHHHHHHHHH-----
Confidence 76544433211101467899999999999999877543221 12345788999999999766555543310
Q ss_pred HHHHHHHhhhhhhh-ccccccchhhhcccCCCCcchhHHHh-hhccCCCCcccChhHHHHHHhhcCcccccCccchhhHh
Q 001995 413 EWQRVLENELWELE-ELDEGLLGPLLLSYLDLPPPLKKCFS-YCAIFPKDSRLEKDKLIRLWMAQDYLKVKGREDMVVGE 490 (985)
Q Consensus 413 ~w~~~~~~~~~~~~-~~~~~i~~~l~~sy~~L~~~~k~cfl-~~a~fp~~~~i~~~~Li~~Wiaeg~i~~~~~~~~~~~~ 490 (985)
....... .... +.-......+...|..++++.+..+. .++.+..+ .+..+.+-... +.+...++
T Consensus 208 -~a~~~~~--~~it~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l----------g~~~~~~~ 273 (305)
T TIGR00635 208 -FAQVRGQ--KIINRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL----------GEDADTIE 273 (305)
T ss_pred -HHHHcCC--CCcCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh----------CCCcchHH
Confidence 0000000 0000 00011222256678899998887776 55666533 45544433322 22235566
Q ss_pred HHHH-HHHhhcccccc
Q 001995 491 GYFE-NLAMRSLFQDF 505 (985)
Q Consensus 491 ~~~~-~L~~r~ll~~~ 505 (985)
..++ .|++.+|+...
T Consensus 274 ~~~e~~Li~~~li~~~ 289 (305)
T TIGR00635 274 DVYEPYLLQIGFLQRT 289 (305)
T ss_pred HhhhHHHHHcCCcccC
Confidence 7778 69999999643
No 30
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.97 E-value=3.3e-11 Score=125.01 Aligned_cols=261 Identities=21% Similarity=0.180 Sum_probs=161.6
Q ss_pred CceEEEccCcCCcchhhhHHHhhccCCcceeecCC--CCCCC-CcccccCCCCCeEecCCCCCccccchh-hcCCCCCcE
Q 001995 578 KLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL--PVGQI-PKGIKKLIHLRYLALGENPWIKELPEA-LCELCNLQT 653 (985)
Q Consensus 578 ~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~--~~~~l-p~~i~~l~~Lr~L~L~~~~~i~~lp~~-i~~L~~L~~ 653 (985)
....+.+..|. +..+.+..|+.++.||.|||+ .+..+ |+.|..|..|-.|-+-+++.|+.+|.. +.+|..|+.
T Consensus 68 ~tveirLdqN~---I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqr 144 (498)
T KOG4237|consen 68 ETVEIRLDQNQ---ISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQR 144 (498)
T ss_pred cceEEEeccCC---cccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHH
Confidence 44556677665 355667789999999999998 67776 778999999888777774449999975 788999999
Q ss_pred eeccCcccccccchhhhhccccceeecccccccccccCCC-cCCCCCCCCccCceEecCCCcccccCCchhhhccccCcc
Q 001995 654 LDVSLCHYLKRLPERIGQLINLRHLMNSKEEWSRLSYMPR-GMERLTGLRTLGAFVASGGKSSKACSSLKSLNKLKHLEG 732 (985)
Q Consensus 654 L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~l~~lp~-~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~ 732 (985)
|.+.-|+.-......+..|++|..|.+.+|. ++.++. .+..+.+++++.+..+.... .| .+..+......-
T Consensus 145 LllNan~i~Cir~~al~dL~~l~lLslyDn~---~q~i~~~tf~~l~~i~tlhlA~np~ic---dC-nL~wla~~~a~~- 216 (498)
T KOG4237|consen 145 LLLNANHINCIRQDALRDLPSLSLLSLYDNK---IQSICKGTFQGLAAIKTLHLAQNPFIC---DC-NLPWLADDLAMN- 216 (498)
T ss_pred HhcChhhhcchhHHHHHHhhhcchhcccchh---hhhhccccccchhccchHhhhcCcccc---cc-ccchhhhHHhhc-
Confidence 9999988444445678899999999988654 366676 47888899998876554332 33 222222110000
Q ss_pred eeeecccccccCCCCcchhhhcccccc---cccccEE--EEEcCCCCcchhHhhhcCCCCCCCCCeEEEeeccCCCCCCC
Q 001995 733 SLTLRGLGNERDLGDDNDDEKVDLKSK---MKLVDLH--LRFDSTTKTKDHRVVLECLQPPSSLEKLGIYGYAGDTISPT 807 (985)
Q Consensus 733 ~L~i~~l~~~~~~~~~~~~~~~~l~~~---~~L~~L~--l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 807 (985)
.....+..-+.... ........+... .+++++- +.... ..+.......+..+++|++|++++|....+.
T Consensus 217 ~ietsgarc~~p~r-l~~~Ri~q~~a~kf~c~~esl~s~~~~~d---~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~-- 290 (498)
T KOG4237|consen 217 PIETSGARCVSPYR-LYYKRINQEDARKFLCSLESLPSRLSSED---FPDSICPAKCFKKLPNLRKLNLSNNKITRIE-- 290 (498)
T ss_pred hhhcccceecchHH-HHHHHhcccchhhhhhhHHhHHHhhcccc---CcCCcChHHHHhhcccceEeccCCCccchhh--
Confidence 00111110000000 000000000000 0111110 00000 0011111223566789999999999988876
Q ss_pred ChhhhccccccEEeEeccCCCCcCC--CCCCCCccceeeccCCCCceEeCCc
Q 001995 808 SDWMLSLAKLRVLTLRFCNECECLP--PLGKLPCLETLVLEGMSSVKRLGNG 857 (985)
Q Consensus 808 p~~~~~l~~L~~L~L~~~~~~~~l~--~l~~l~~L~~L~L~~~~~l~~l~~~ 857 (985)
+.||..+..++.|.|..|+ ++.+. .+.++..|+.|+|.++. |+.+...
T Consensus 291 ~~aFe~~a~l~eL~L~~N~-l~~v~~~~f~~ls~L~tL~L~~N~-it~~~~~ 340 (498)
T KOG4237|consen 291 DGAFEGAAELQELYLTRNK-LEFVSSGMFQGLSGLKTLSLYDNQ-ITTVAPG 340 (498)
T ss_pred hhhhcchhhhhhhhcCcch-HHHHHHHhhhccccceeeeecCCe-eEEEecc
Confidence 7899999999999999984 44443 47788999999999854 7666443
No 31
>PF05729 NACHT: NACHT domain
Probab=98.92 E-value=6.9e-09 Score=102.44 Aligned_cols=143 Identities=22% Similarity=0.296 Sum_probs=87.7
Q ss_pred EEEEEEccCCchHHHHHHHHhcchhhhcc----CCceEEEEeCCCCCHH---HHHHHHHHHhcCCCCCCCCHHHHHHHHH
Q 001995 217 TIISITGMGGIGKTTLAKLIFNDNEVRNH----FNEKIWVCVSEPFDDI---RIAKAILESLKGSATNAVESETVLKQLR 289 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 289 (985)
+++.|+|.+|+||||+++.++........ +...+|+..+...... .+...|..+..... ..... .+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~---~~~~~---~~~ 74 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI---APIEE---LLQ 74 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch---hhhHH---HHH
Confidence 47999999999999999999985332222 3456677665443332 33333333332211 11111 122
Q ss_pred HHh-cCceEEEEecCCCCCCcc-------cHHHHH-hhhcC-CCCCcEEEEEcCchhhHHh---hcCcccccccCCCCCh
Q 001995 290 ESI-EGKKFFLVLDDVWTEEPQ-------NWEQLL-GCLRC-GSKESRILVTTRNEKVAIA---IGTTKFNIIPIELLSD 356 (985)
Q Consensus 290 ~~l-~~k~~LlVlDdv~~~~~~-------~~~~l~-~~l~~-~~~gs~ilvTtR~~~v~~~---~~~~~~~~~~l~~L~~ 356 (985)
..+ +.++++||+|++++.... .+..+. ..++. ...+.+++||+|....... .... ..+++.+|++
T Consensus 75 ~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~--~~~~l~~~~~ 152 (166)
T PF05729_consen 75 ELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQA--QILELEPFSE 152 (166)
T ss_pred HHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCC--cEEEECCCCH
Confidence 222 578999999999653321 123333 23332 3568899999998776332 2222 5799999999
Q ss_pred HHHHHHHHHHh
Q 001995 357 EDCWSIFSQLA 367 (985)
Q Consensus 357 ~e~~~Lf~~~~ 367 (985)
++..+++++..
T Consensus 153 ~~~~~~~~~~f 163 (166)
T PF05729_consen 153 EDIKQYLRKYF 163 (166)
T ss_pred HHHHHHHHHHh
Confidence 99999997753
No 32
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.80 E-value=8.1e-08 Score=117.23 Aligned_cols=316 Identities=16% Similarity=0.178 Sum_probs=180.8
Q ss_pred eecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceE---EEEeCC
Q 001995 180 IRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKI---WVCVSE 256 (985)
Q Consensus 180 ~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~---wv~~~~ 256 (985)
++||+.+.+.|...+.... .+...++.+.|..|||||+|+++|.. .+...+...+ +-....
T Consensus 2 l~GRe~ev~~Ll~~f~~v~--------------~g~~~~~lv~G~sGIGKsalv~ev~~--~i~~~~~~~i~~~f~q~~~ 65 (849)
T COG3899 2 LYGRETELAQLLAAFDRVS--------------KGRGEVVLVAGESGIGKSALVNEVHK--PITQQRGYFIKGKFDQFER 65 (849)
T ss_pred CCchHhHHHHHHHHHHHHh--------------CCCeEEEEEeecCCCcHHHHHHHHHH--HHhccceeeeHhhcccccC
Confidence 6899999999999998765 45667999999999999999999988 3433321111 111111
Q ss_pred CCC---HHHHHHHHHHHhcCCC---------------------------------C-C-------CCCHHH-----HHHH
Q 001995 257 PFD---DIRIAKAILESLKGSA---------------------------------T-N-------AVESET-----VLKQ 287 (985)
Q Consensus 257 ~~~---~~~~~~~i~~~l~~~~---------------------------------~-~-------~~~~~~-----~~~~ 287 (985)
... ..+.+++++.++.... . . ...... ....
T Consensus 66 ~ipl~~lvq~~r~l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~ 145 (849)
T COG3899 66 NIPLSPLVQAFRDLMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRF 145 (849)
T ss_pred CCchHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHH
Confidence 111 2234444444441110 0 0 000000 1111
Q ss_pred HHHHh-cCceEEEEecCCCCCCcccHHHHHhhhcCCC------CCcEEEEEcCchhhHHhhcCcccccccCCCCChHHHH
Q 001995 288 LRESI-EGKKFFLVLDDVWTEEPQNWEQLLGCLRCGS------KESRILVTTRNEKVAIAIGTTKFNIIPIELLSDEDCW 360 (985)
Q Consensus 288 l~~~l-~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~------~gs~ilvTtR~~~v~~~~~~~~~~~~~l~~L~~~e~~ 360 (985)
+.... +.++.++|+||+...|....+-+........ +..-.+.|.+...-...........+.|.||+..+..
T Consensus 146 i~~~~~~~~plVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~ 225 (849)
T COG3899 146 IQVFTAEEHPLVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTN 225 (849)
T ss_pred HHHHHhccCCeEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHH
Confidence 22222 3569999999997666555544443333221 1112233333332111222223478999999999999
Q ss_pred HHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHHHHHhhhhcC------CChHHHHHHHHhhhhhhhccccccch
Q 001995 361 SIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVKTLGSLLRFK------GKIEEWQRVLENELWELEELDEGLLG 434 (985)
Q Consensus 361 ~Lf~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~~~~L~~~------~~~~~w~~~~~~~~~~~~~~~~~i~~ 434 (985)
.+........ .....+....|+++..|+|+.+..+-..+... .+...|..-... ....... +.+..
T Consensus 226 ~lV~~~l~~~------~~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~-i~~~~~~-~~vv~ 297 (849)
T COG3899 226 QLVAATLGCT------KLLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIAS-LGILATT-DAVVE 297 (849)
T ss_pred HHHHHHhCCc------ccccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHh-cCCchhh-HHHHH
Confidence 9998876432 22234568899999999999999999888653 233444322211 1111111 22455
Q ss_pred hhhcccCCCCcchhHHHhhhccCCCCcccChhHHHHHHhhcCcccccCccchhhHhHHHHHHHhhccccccccCCCCCCe
Q 001995 435 PLLLSYLDLPPPLKKCFSYCAIFPKDSRLEKDKLIRLWMAQDYLKVKGREDMVVGEGYFENLAMRSLFQDFERSEHDGGK 514 (985)
Q Consensus 435 ~l~~sy~~L~~~~k~cfl~~a~fp~~~~i~~~~Li~~Wiaeg~i~~~~~~~~~~~~~~~~~L~~r~ll~~~~~~~~~~~~ 514 (985)
.+..-.+.||...+..+...|++- -.|+.+.|...|-. .....+....+.|....++-..+.... +..
T Consensus 298 ~l~~rl~kL~~~t~~Vl~~AA~iG--~~F~l~~La~l~~~---------~~~~~a~~l~~al~e~lI~~~~~~yr~-~~~ 365 (849)
T COG3899 298 FLAARLQKLPGTTREVLKAAACIG--NRFDLDTLAALAED---------SPALEAAALLDALQEGLILPLSETYRF-GSN 365 (849)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHhC--ccCCHHHHHHHHhh---------chHHHHHHHHHHhHhhceecccccccc-ccc
Confidence 677889999999999999999995 45566666666521 111455555555555554432211111 111
Q ss_pred EEEE---ecchHHHHHHHhh
Q 001995 515 IISC---QMHDMVHDFSQFL 531 (985)
Q Consensus 515 ~~~~---~mHdlv~d~~~~~ 531 (985)
+... ..||.+++.+-..
T Consensus 366 ~~~~~Y~F~H~~vqqaaY~~ 385 (849)
T COG3899 366 VDIATYKFLHDRVQQAAYNL 385 (849)
T ss_pred cchhhHHhhHHHHHHHHhcc
Confidence 1112 4688888877543
No 33
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.79 E-value=2.8e-10 Score=118.28 Aligned_cols=117 Identities=25% Similarity=0.370 Sum_probs=79.9
Q ss_pred eecCCCCCCCCc-ccccCCCCCeEecCCCCCcccc-chhhcCCCCCcEeeccCcccccccchh-hhhccccceeeccccc
Q 001995 608 SIDGLPVGQIPK-GIKKLIHLRYLALGENPWIKEL-PEALCELCNLQTLDVSLCHYLKRLPER-IGQLINLRHLMNSKEE 684 (985)
Q Consensus 608 ~L~l~~~~~lp~-~i~~l~~Lr~L~L~~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~l~~~~ 684 (985)
.|+-..+..+|+ .|+.+++||.|||++|. |+.+ |..+..|.+|..|-+.+++.++.+|++ ++.|..|+.|.+.-|.
T Consensus 73 rLdqN~I~~iP~~aF~~l~~LRrLdLS~N~-Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~ 151 (498)
T KOG4237|consen 73 RLDQNQISSIPPGAFKTLHRLRRLDLSKNN-ISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANH 151 (498)
T ss_pred EeccCCcccCChhhccchhhhceecccccc-hhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhh
Confidence 345557888865 57888889999999888 7765 667888888888888885558888854 5778888888877554
Q ss_pred ccccccCCC-cCCCCCCCCccCceEecCCCcccccCCchhhhccccC
Q 001995 685 WSRLSYMPR-GMERLTGLRTLGAFVASGGKSSKACSSLKSLNKLKHL 730 (985)
Q Consensus 685 ~~~l~~lp~-~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L 730 (985)
| ..++. .+..|++|..|.++.+.......+ .+..+..++.+
T Consensus 152 i---~Cir~~al~dL~~l~lLslyDn~~q~i~~~--tf~~l~~i~tl 193 (498)
T KOG4237|consen 152 I---NCIRQDALRDLPSLSLLSLYDNKIQSICKG--TFQGLAAIKTL 193 (498)
T ss_pred h---cchhHHHHHHhhhcchhcccchhhhhhccc--cccchhccchH
Confidence 4 33443 366777777777776544432212 34555555433
No 34
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.76 E-value=3.6e-10 Score=118.57 Aligned_cols=167 Identities=18% Similarity=0.187 Sum_probs=109.2
Q ss_pred CCCCCCCeEEEeeccCCCCCCCChh-h-hccccccEEeEeccCCCCcCC--CC-CCCCccceeeccCCCCceEeCCcccC
Q 001995 786 QPPSSLEKLGIYGYAGDTISPTSDW-M-LSLAKLRVLTLRFCNECECLP--PL-GKLPCLETLVLEGMSSVKRLGNGFLG 860 (985)
Q Consensus 786 ~~~~~L~~L~l~~~~~~~~~~~p~~-~-~~l~~L~~L~L~~~~~~~~l~--~l-~~l~~L~~L~L~~~~~l~~l~~~~~~ 860 (985)
..+..|+.|+.+++...... +-| + .+.++|+.|.++.|..+.+.- .+ .+.+.|+.|++.+|..+..- ++..
T Consensus 291 ~~c~~lq~l~~s~~t~~~d~--~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~--tL~s 366 (483)
T KOG4341|consen 291 CGCHALQVLCYSSCTDITDE--VLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG--TLAS 366 (483)
T ss_pred hhhhHhhhhcccCCCCCchH--HHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh--hHhh
Confidence 34567788887777642221 111 1 256888888888887655432 33 36788888888887633211 1211
Q ss_pred CchhhhhhhhhhhcccccccCCCCCccceeeccccccccccccccccCcccccccccceeecccccCCCC-CCCCCCCCC
Q 001995 861 IAEDHQARADQAETASSIIRDTAFPRLETLEFLDMEKWEEWDDCEIAGGKTIMPRLRHLSICWSPELKAL-PDYILGSTS 939 (985)
Q Consensus 861 ~~~~~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~lp~L~~L~i~~c~~L~~l-p~~~~~l~~ 939 (985)
. ...+|.|+.|.++.|..+++-..........++..|+.|.+.+||.++.- -+.+.++++
T Consensus 367 l-------------------s~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~ 427 (483)
T KOG4341|consen 367 L-------------------SRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRN 427 (483)
T ss_pred h-------------------ccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcc
Confidence 1 35789999999999887665522222224567899999999999988753 345678899
Q ss_pred cCeEEecCchhhhhhhcCCCCCCCCCcCCcCceeec-----CCCCCC
Q 001995 940 LDKLLIYYSRHLNNRYNMETGPEWPKISHVPNISFT-----LHGPAA 981 (985)
Q Consensus 940 L~~L~i~~c~~l~~~~~~~~~~~w~~~~h~p~~~~~-----~~~~~~ 981 (985)
|+.+++.+|..++..-.. .-..|.|++.+. ..+|++
T Consensus 428 Leri~l~~~q~vtk~~i~------~~~~~lp~i~v~a~~a~~t~p~~ 468 (483)
T KOG4341|consen 428 LERIELIDCQDVTKEAIS------RFATHLPNIKVHAYFAPVTPPGF 468 (483)
T ss_pred cceeeeechhhhhhhhhH------HHHhhCccceehhhccCCCCccc
Confidence 999999999987653211 124678888774 556653
No 35
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.76 E-value=4.1e-10 Score=124.57 Aligned_cols=83 Identities=23% Similarity=0.255 Sum_probs=41.0
Q ss_pred HhhccCCcceeecCCCCC-------CCCcccccCCCCCeEecCCCCCcc-------ccchhhcCCCCCcEeeccCccccc
Q 001995 598 KLFDRLTCLRSIDGLPVG-------QIPKGIKKLIHLRYLALGENPWIK-------ELPEALCELCNLQTLDVSLCHYLK 663 (985)
Q Consensus 598 ~~~~~l~~Lr~L~l~~~~-------~lp~~i~~l~~Lr~L~L~~~~~i~-------~lp~~i~~L~~L~~L~l~~~~~l~ 663 (985)
..|..+..|+.|+++... .++..+...+.|++|+++++. +. .++..+.++++|+.|++++|....
T Consensus 17 ~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~-~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 95 (319)
T cd00116 17 ELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNE-TGRIPRGLQSLLQGLTKGCGLQELDLSDNALGP 95 (319)
T ss_pred HHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccc-cCCcchHHHHHHHHHHhcCceeEEEccCCCCCh
Confidence 344555556666665222 233444455556666665554 32 123344555566666666555222
Q ss_pred ccchhhhhccc---cceeecc
Q 001995 664 RLPERIGQLIN---LRHLMNS 681 (985)
Q Consensus 664 ~lp~~i~~L~~---L~~L~l~ 681 (985)
..+..+..+.+ |++|+++
T Consensus 96 ~~~~~~~~l~~~~~L~~L~ls 116 (319)
T cd00116 96 DGCGVLESLLRSSSLQELKLN 116 (319)
T ss_pred hHHHHHHHHhccCcccEEEee
Confidence 33444444444 5555555
No 36
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.76 E-value=2.4e-07 Score=107.27 Aligned_cols=214 Identities=14% Similarity=0.142 Sum_probs=127.4
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhh---hccCC--ceEEEE
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEV---RNHFN--EKIWVC 253 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~---~~~f~--~~~wv~ 253 (985)
.+.|||+|+++|...|...-. . .....++.|+|++|.|||+.++.|.+.-+. ....+ .+++|+
T Consensus 756 ~LPhREeEIeeLasfL~paIk----------g--sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYIN 823 (1164)
T PTZ00112 756 YLPCREKEIKEVHGFLESGIK----------Q--SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEIN 823 (1164)
T ss_pred cCCChHHHHHHHHHHHHHHHh----------c--CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEe
Confidence 799999999999999875431 0 123367889999999999999999874211 11222 256788
Q ss_pred eCCCCCHHHHHHHHHHHhcCCC-CCCCCHHHHHHHHHHHhc---CceEEEEecCCCCCCcccHHHHHhhhcC-CCCCcEE
Q 001995 254 VSEPFDDIRIAKAILESLKGSA-TNAVESETVLKQLRESIE---GKKFFLVLDDVWTEEPQNWEQLLGCLRC-GSKESRI 328 (985)
Q Consensus 254 ~~~~~~~~~~~~~i~~~l~~~~-~~~~~~~~~~~~l~~~l~---~k~~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~i 328 (985)
+....+...++..|.+++.+.. ........+...+...+. +...+||||+++......-+.|...+.+ ...+++|
T Consensus 824 Cm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKL 903 (1164)
T PTZ00112 824 GMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKL 903 (1164)
T ss_pred CCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeE
Confidence 8777788899999999995443 223333344444444432 2346999999964322121223333332 2245555
Q ss_pred EE--EcCchhhH----HhhcC-cccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHHHH
Q 001995 329 LV--TTRNEKVA----IAIGT-TKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVKTL 401 (985)
Q Consensus 329 lv--TtR~~~v~----~~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~ 401 (985)
+| .|...+.. ..+.. .....+...|++.++-.+++..++..... .-.+..++-+|+.++...|-.-.||.++
T Consensus 904 iLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~g-VLdDdAIELIArkVAq~SGDARKALDIL 982 (1164)
T PTZ00112 904 VLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKE-IIDHTAIQLCARKVANVSGDIRKALQIC 982 (1164)
T ss_pred EEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCC-CCCHHHHHHHHHhhhhcCCHHHHHHHHH
Confidence 54 33222211 11111 01134677999999999999998764211 1233444455555555555566677666
Q ss_pred Hhhh
Q 001995 402 GSLL 405 (985)
Q Consensus 402 ~~~L 405 (985)
-.+.
T Consensus 983 RrAg 986 (1164)
T PTZ00112 983 RKAF 986 (1164)
T ss_pred HHHH
Confidence 5444
No 37
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.75 E-value=6.3e-10 Score=120.85 Aligned_cols=125 Identities=33% Similarity=0.391 Sum_probs=96.9
Q ss_pred cCCCCceEEEccCcCCcchhhhHHHhhccCCcceeecCC--CCCCCCcccccCCCCCeEecCCCCCccccchhhcCCCCC
Q 001995 574 YDETKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL--PVGQIPKGIKKLIHLRYLALGENPWIKELPEALCELCNL 651 (985)
Q Consensus 574 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~--~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L 651 (985)
..+..-...+++.+.+.. +|.-+..|..|..|.+. .+..+|..+++|..|.||+|+.|. +..+|..+|.|+ |
T Consensus 72 ~~ltdt~~aDlsrNR~~e----lp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp-L 145 (722)
T KOG0532|consen 72 YDLTDTVFADLSRNRFSE----LPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDLP-L 145 (722)
T ss_pred ccccchhhhhcccccccc----CchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccch-hhcCChhhhcCc-c
Confidence 334444555666665422 33335555666666665 677789999999999999999999 999999999887 9
Q ss_pred cEeeccCcccccccchhhhhccccceeecccccccccccCCCcCCCCCCCCccCceE
Q 001995 652 QTLDVSLCHYLKRLPERIGQLINLRHLMNSKEEWSRLSYMPRGMERLTGLRTLGAFV 708 (985)
Q Consensus 652 ~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~l~~lp~~i~~l~~L~~L~~~~ 708 (985)
+.|.+++|+ +..+|..|+.+..|.+|+.+ ++.+..+|..++.+.+|+.|.+..
T Consensus 146 kvli~sNNk-l~~lp~~ig~~~tl~~ld~s---~nei~slpsql~~l~slr~l~vrR 198 (722)
T KOG0532|consen 146 KVLIVSNNK-LTSLPEEIGLLPTLAHLDVS---KNEIQSLPSQLGYLTSLRDLNVRR 198 (722)
T ss_pred eeEEEecCc-cccCCcccccchhHHHhhhh---hhhhhhchHHhhhHHHHHHHHHhh
Confidence 999999888 99999999999999999998 345678888888888888877653
No 38
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.68 E-value=4.7e-09 Score=116.11 Aligned_cols=243 Identities=19% Similarity=0.159 Sum_probs=141.4
Q ss_pred CccccCCCCceEEEccCcCCcc-hhhhHHHhhccCCcceeecCCC--CC-------CCCcccccCCCCCeEecCCCCCcc
Q 001995 570 PSMVYDETKLRSLVLDQRLSFK-PRIALSKLFDRLTCLRSIDGLP--VG-------QIPKGIKKLIHLRYLALGENPWIK 639 (985)
Q Consensus 570 ~~~~~~~~~Lr~L~l~~~~~~~-~~~~~~~~~~~l~~Lr~L~l~~--~~-------~lp~~i~~l~~Lr~L~L~~~~~i~ 639 (985)
...+..+..|+.|.+.++.... ....++..+...+.|+.|+++. +. .++..+..+.+|++|++++|....
T Consensus 16 ~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 95 (319)
T cd00116 16 TELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGP 95 (319)
T ss_pred HHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCCh
Confidence 3444566678889888875311 1122455567777888888872 22 123456778899999999998333
Q ss_pred ccchhhcCCCC---CcEeeccCccccc-----ccchhhhhc-cccceeecccccccc--cccCCCcCCCCCCCCccCceE
Q 001995 640 ELPEALCELCN---LQTLDVSLCHYLK-----RLPERIGQL-INLRHLMNSKEEWSR--LSYMPRGMERLTGLRTLGAFV 708 (985)
Q Consensus 640 ~lp~~i~~L~~---L~~L~l~~~~~l~-----~lp~~i~~L-~~L~~L~l~~~~~~~--l~~lp~~i~~l~~L~~L~~~~ 708 (985)
..+..+..+.+ |+.|++++|. +. .+...+..+ ++|+.|++++|.... ...++..+..+++|++|++..
T Consensus 96 ~~~~~~~~l~~~~~L~~L~ls~~~-~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~ 174 (319)
T cd00116 96 DGCGVLESLLRSSSLQELKLNNNG-LGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLAN 174 (319)
T ss_pred hHHHHHHHHhccCcccEEEeeCCc-cchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcC
Confidence 45556666655 9999999987 44 233455666 899999999554431 112333445556666665543
Q ss_pred ecCCCcccccCCchhhhccccCcceeeecccccccCCCCcchhhhcccccccccccEEEEEcCCCCcchhHhhhcCCCCC
Q 001995 709 ASGGKSSKACSSLKSLNKLKHLEGSLTLRGLGNERDLGDDNDDEKVDLKSKMKLVDLHLRFDSTTKTKDHRVVLECLQPP 788 (985)
Q Consensus 709 ~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~ 788 (985)
+..... .+.. ....+...++|+.|+++.+... ......+...+..+
T Consensus 175 n~l~~~-----~~~~----------------------------l~~~l~~~~~L~~L~L~~n~i~-~~~~~~l~~~~~~~ 220 (319)
T cd00116 175 NGIGDA-----GIRA----------------------------LAEGLKANCNLEVLDLNNNGLT-DEGASALAETLASL 220 (319)
T ss_pred CCCchH-----HHHH----------------------------HHHHHHhCCCCCEEeccCCccC-hHHHHHHHHHhccc
Confidence 221110 0000 0011222346666666655411 11223344455667
Q ss_pred CCCCeEEEeeccCCCCCCCChhhh-----ccccccEEeEeccCCCC----cC-CCCCCCCccceeeccCCC
Q 001995 789 SSLEKLGIYGYAGDTISPTSDWML-----SLAKLRVLTLRFCNECE----CL-PPLGKLPCLETLVLEGMS 849 (985)
Q Consensus 789 ~~L~~L~l~~~~~~~~~~~p~~~~-----~l~~L~~L~L~~~~~~~----~l-~~l~~l~~L~~L~L~~~~ 849 (985)
++|+.|++++|...... +..+. ..+.|++|++++|.... .+ ..+..+++|++|+++++.
T Consensus 221 ~~L~~L~ls~n~l~~~~--~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 221 KSLEVLNLGDNNLTDAG--AAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred CCCCEEecCCCcCchHH--HHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence 88999999887644311 12222 23789999999885421 11 134556889999998854
No 39
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.68 E-value=3.7e-07 Score=103.57 Aligned_cols=179 Identities=20% Similarity=0.271 Sum_probs=106.1
Q ss_pred ceecchhhHHH---HHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeC
Q 001995 179 EIRGRNHLQNK---VASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVS 255 (985)
Q Consensus 179 ~~vGr~~~~~~---l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 255 (985)
++||++..+.. +..++.. .....+.|+|++|+||||+|+.+++. .... |+.++
T Consensus 13 d~vGq~~~v~~~~~L~~~i~~-----------------~~~~~ilL~GppGtGKTtLA~~ia~~--~~~~-----~~~l~ 68 (413)
T PRK13342 13 EVVGQEHLLGPGKPLRRMIEA-----------------GRLSSMILWGPPGTGKTTLARIIAGA--TDAP-----FEALS 68 (413)
T ss_pred HhcCcHHHhCcchHHHHHHHc-----------------CCCceEEEECCCCCCHHHHHHHHHHH--hCCC-----EEEEe
Confidence 68888877655 7777652 34457888999999999999999873 3222 23322
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH-hcCceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEEEE--Ec
Q 001995 256 EPFDDIRIAKAILESLKGSATNAVESETVLKQLRES-IEGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRILV--TT 332 (985)
Q Consensus 256 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv--Tt 332 (985)
....-..-.+.+++ ..... ..+++.+|++|+++.......+.+...+.. |..++| ||
T Consensus 69 a~~~~~~~ir~ii~-----------------~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI~att 128 (413)
T PRK13342 69 AVTSGVKDLREVIE-----------------EARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLIGATT 128 (413)
T ss_pred cccccHHHHHHHHH-----------------HHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEEEeCC
Confidence 21111111122221 12111 146788999999987665566666666543 444444 34
Q ss_pred Cchh--hHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHHHHHhh
Q 001995 333 RNEK--VAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVKTLGSL 404 (985)
Q Consensus 333 R~~~--v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~~~~ 404 (985)
.+.. +...+.. ....+++.+++.++...++.+........ . ..-..+....|++.|+|.+..+..+...
T Consensus 129 ~n~~~~l~~aL~S-R~~~~~~~~ls~e~i~~lL~~~l~~~~~~-~-i~i~~~al~~l~~~s~Gd~R~aln~Le~ 199 (413)
T PRK13342 129 ENPSFEVNPALLS-RAQVFELKPLSEEDIEQLLKRALEDKERG-L-VELDDEALDALARLANGDARRALNLLEL 199 (413)
T ss_pred CChhhhccHHHhc-cceeeEeCCCCHHHHHHHHHHHHHHhhcC-C-CCCCHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 4332 1111111 12578999999999999998865321111 0 0122355778899999998766544433
No 40
>PRK06893 DNA replication initiation factor; Validated
Probab=98.65 E-value=2.4e-07 Score=95.98 Aligned_cols=155 Identities=17% Similarity=0.211 Sum_probs=96.6
Q ss_pred EEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCce
Q 001995 217 TIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKK 296 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 296 (985)
+.+.|+|++|+|||+|++.+++. .......+.|+++... ..... .+.+.+. +.
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~y~~~~~~---~~~~~---------------------~~~~~~~-~~ 92 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNH--YLLNQRTAIYIPLSKS---QYFSP---------------------AVLENLE-QQ 92 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEeeHHHh---hhhhH---------------------HHHhhcc-cC
Confidence 57899999999999999999984 3333445677765321 00000 1111122 33
Q ss_pred EEEEecCCCCCC-cccHHH-HHhhhcCC-CCCcEEEE-EcCc---------hhhHHhhcCcccccccCCCCChHHHHHHH
Q 001995 297 FFLVLDDVWTEE-PQNWEQ-LLGCLRCG-SKESRILV-TTRN---------EKVAIAIGTTKFNIIPIELLSDEDCWSIF 363 (985)
Q Consensus 297 ~LlVlDdv~~~~-~~~~~~-l~~~l~~~-~~gs~ilv-TtR~---------~~v~~~~~~~~~~~~~l~~L~~~e~~~Lf 363 (985)
-+|||||+|... ...|+. +...+... ..|..+|| |+.. +.+...+... ..++++++++++.++++
T Consensus 93 dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g--~~~~l~~pd~e~~~~iL 170 (229)
T PRK06893 93 DLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWG--EIYQLNDLTDEQKIIVL 170 (229)
T ss_pred CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcC--CeeeCCCCCHHHHHHHH
Confidence 589999998642 345653 44434322 23555655 4443 3455555544 58899999999999999
Q ss_pred HHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHHHHHhhh
Q 001995 364 SQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVKTLGSLL 405 (985)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~~~~L 405 (985)
++.+...... . -+++..-|++++.|..-.+..+-..|
T Consensus 171 ~~~a~~~~l~--l---~~~v~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 171 QRNAYQRGIE--L---SDEVANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred HHHHHHcCCC--C---CHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 9988754321 1 23567788889988776665554444
No 41
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.62 E-value=8.6e-08 Score=90.33 Aligned_cols=118 Identities=21% Similarity=0.264 Sum_probs=81.3
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhh---ccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH
Q 001995 215 RPTIISITGMGGIGKTTLAKLIFNDNEVR---NHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRES 291 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~---~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 291 (985)
+.+++.|+|.+|+|||++++.++++.... ..-..++|+.+....+...+...|+.+++.......+.+++...+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 34689999999999999999999842111 013457799998888999999999999987766556777777888888
Q ss_pred hcCc-eEEEEecCCCCC-CcccHHHHHhhhcCCCCCcEEEEEcCc
Q 001995 292 IEGK-KFFLVLDDVWTE-EPQNWEQLLGCLRCGSKESRILVTTRN 334 (985)
Q Consensus 292 l~~k-~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~ilvTtR~ 334 (985)
+... ..+||+|++... ....++.+..... ..+.+||+..+.
T Consensus 83 l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 8654 459999999654 4334444433333 566678877665
No 42
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.60 E-value=8.3e-07 Score=93.94 Aligned_cols=156 Identities=21% Similarity=0.255 Sum_probs=93.9
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHH-HHh
Q 001995 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLR-ESI 292 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~-~~l 292 (985)
+.+.-..+||++|+||||||+.+.. .....| ..++...+-.+-++.++ +.-+ ...
T Consensus 46 ~~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f-----~~~sAv~~gvkdlr~i~-----------------e~a~~~~~ 101 (436)
T COG2256 46 GHLHSMILWGPPGTGKTTLARLIAG--TTNAAF-----EALSAVTSGVKDLREII-----------------EEARKNRL 101 (436)
T ss_pred CCCceeEEECCCCCCHHHHHHHHHH--hhCCce-----EEeccccccHHHHHHHH-----------------HHHHHHHh
Confidence 5677888999999999999999998 344444 23332222222222222 2221 223
Q ss_pred cCceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEEEE--EcCchhhH--H-hhcCcccccccCCCCChHHHHHHHHHHh
Q 001995 293 EGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRILV--TTRNEKVA--I-AIGTTKFNIIPIELLSDEDCWSIFSQLA 367 (985)
Q Consensus 293 ~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv--TtR~~~v~--~-~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 367 (985)
.|++.+|++|.|..-+..+-+.+++.+. +|.-|+| ||.++... . ...- ..++.+++|+.++..+++.+.+
T Consensus 102 ~gr~tiLflDEIHRfnK~QQD~lLp~vE---~G~iilIGATTENPsF~ln~ALlSR--~~vf~lk~L~~~di~~~l~ra~ 176 (436)
T COG2256 102 LGRRTILFLDEIHRFNKAQQDALLPHVE---NGTIILIGATTENPSFELNPALLSR--ARVFELKPLSSEDIKKLLKRAL 176 (436)
T ss_pred cCCceEEEEehhhhcChhhhhhhhhhhc---CCeEEEEeccCCCCCeeecHHHhhh--hheeeeecCCHHHHHHHHHHHH
Confidence 5899999999998876555555555443 4666666 55554321 1 1112 2689999999999999998844
Q ss_pred cCCCCCcc--cchhHHHHHHHHHHhcCCChhHH
Q 001995 368 LSRRLDIE--ESENFENIGRQIVSKCKGLPLAV 398 (985)
Q Consensus 368 ~~~~~~~~--~~~~~~~~~~~I~~~~~GlPLai 398 (985)
........ ...-.+++...+++.++|---+.
T Consensus 177 ~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~a 209 (436)
T COG2256 177 LDEERGLGGQIIVLDEEALDYLVRLSNGDARRA 209 (436)
T ss_pred hhhhcCCCcccccCCHHHHHHHHHhcCchHHHH
Confidence 32222111 01112345667788888865443
No 43
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.55 E-value=1.4e-07 Score=95.09 Aligned_cols=47 Identities=26% Similarity=0.470 Sum_probs=32.7
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcc
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFND 239 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 239 (985)
.||||+++++++.+.|.... ....+.+.|+|.+|+|||+|.++++..
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~--------------~~~~~~~ll~G~~G~GKT~ll~~~~~~ 47 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQ--------------SGSPRNLLLTGESGSGKTSLLRALLDR 47 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTS--------------S-----EEE-B-TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHH--------------cCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999996332 356689999999999999999999984
No 44
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.55 E-value=9.4e-07 Score=92.11 Aligned_cols=157 Identities=19% Similarity=0.212 Sum_probs=93.6
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcC
Q 001995 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEG 294 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 294 (985)
....+.|+|+.|+|||+||+.+++. ........++++++.-.+ .. .. +.+.+.+
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~--~~~~~~~~~~i~~~~~~~------~~--------------~~----~~~~~~~ 90 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAA--AEERGKSAIYLPLAELAQ------AD--------------PE----VLEGLEQ 90 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH--HHhcCCcEEEEeHHHHHH------hH--------------HH----HHhhccc
Confidence 3468999999999999999999984 333334456666543211 00 01 1111222
Q ss_pred ceEEEEecCCCCCCcc-cH-HHHHhhhcC-CCCCcEEEEEcCchh---------hHHhhcCcccccccCCCCChHHHHHH
Q 001995 295 KKFFLVLDDVWTEEPQ-NW-EQLLGCLRC-GSKESRILVTTRNEK---------VAIAIGTTKFNIIPIELLSDEDCWSI 362 (985)
Q Consensus 295 k~~LlVlDdv~~~~~~-~~-~~l~~~l~~-~~~gs~ilvTtR~~~---------v~~~~~~~~~~~~~l~~L~~~e~~~L 362 (985)
.-+||+||++..... .| +.+...+.. ...+.++|+||+... +...+... ..+++.+++.++...+
T Consensus 91 -~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~--~~i~l~~l~~~e~~~~ 167 (226)
T TIGR03420 91 -ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWG--LVFQLPPLSDEEKIAA 167 (226)
T ss_pred -CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcC--eeEecCCCCHHHHHHH
Confidence 348999999754332 23 345444432 123347999888532 12222212 4789999999999999
Q ss_pred HHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHHHHHhhh
Q 001995 363 FSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVKTLGSLL 405 (985)
Q Consensus 363 f~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~~~~L 405 (985)
+.+.+..... . -..+..+.|++.+.|.|..+..+...+
T Consensus 168 l~~~~~~~~~--~---~~~~~l~~L~~~~~gn~r~L~~~l~~~ 205 (226)
T TIGR03420 168 LQSRAARRGL--Q---LPDEVADYLLRHGSRDMGSLMALLDAL 205 (226)
T ss_pred HHHHHHHcCC--C---CCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 8875432221 1 113456778888999988776665444
No 45
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.54 E-value=2.6e-06 Score=94.79 Aligned_cols=190 Identities=19% Similarity=0.301 Sum_probs=110.1
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 258 (985)
+++|.+..++.+.+.+..+. -...+.++|+.|+||||+|+.+++.-.-...+. ..+.
T Consensus 17 ~iiGq~~~~~~l~~~~~~~~----------------~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~-------~~pc 73 (363)
T PRK14961 17 DIIGQKHIVTAISNGLSLGR----------------IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGIT-------SNPC 73 (363)
T ss_pred hccChHHHHHHHHHHHHcCC----------------CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCC-------CCCC
Confidence 78999999999999887432 345789999999999999999987311000000 0000
Q ss_pred CHHHHHHHHHHHhc-----CCCCCCCCHHHHHHHHHHHh-----cCceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEE
Q 001995 259 DDIRIAKAILESLK-----GSATNAVESETVLKQLRESI-----EGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRI 328 (985)
Q Consensus 259 ~~~~~~~~i~~~l~-----~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 328 (985)
..-.....+..... .........+++. .+.+.+ .+++-++|+|++.......++.++..+.......++
T Consensus 74 ~~c~~c~~~~~~~~~d~~~~~~~~~~~v~~ir-~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~f 152 (363)
T PRK14961 74 RKCIICKEIEKGLCLDLIEIDAASRTKVEEMR-EILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKF 152 (363)
T ss_pred CCCHHHHHHhcCCCCceEEecccccCCHHHHH-HHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEE
Confidence 00000011100000 0000001122221 122221 245569999999776656678888888766667777
Q ss_pred EEEcCch-hhHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHH
Q 001995 329 LVTTRNE-KVAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAV 398 (985)
Q Consensus 329 lvTtR~~-~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai 398 (985)
|++|.+. .+...+.. ....+++.+++.++..+.+.+.+...+.. -..+.+..|++.++|.|-.+
T Consensus 153 Il~t~~~~~l~~tI~S-Rc~~~~~~~l~~~el~~~L~~~~~~~g~~-----i~~~al~~ia~~s~G~~R~a 217 (363)
T PRK14961 153 ILATTDVEKIPKTILS-RCLQFKLKIISEEKIFNFLKYILIKESID-----TDEYALKLIAYHAHGSMRDA 217 (363)
T ss_pred EEEcCChHhhhHHHHh-hceEEeCCCCCHHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHcCCCHHHH
Confidence 7776543 23222211 12578999999999998888765433211 11345778999999988643
No 46
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.51 E-value=3e-06 Score=92.60 Aligned_cols=178 Identities=19% Similarity=0.216 Sum_probs=114.7
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcch----hhhccCCceEEEEe
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDN----EVRNHFNEKIWVCV 254 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~----~~~~~f~~~~wv~~ 254 (985)
+++|-+..++.+..++..+. -.....++|+.|+||||+|+.++..- ....|.+...|...
T Consensus 5 ~i~g~~~~~~~l~~~~~~~~----------------~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~ 68 (313)
T PRK05564 5 TIIGHENIKNRIKNSIIKNR----------------FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI 68 (313)
T ss_pred hccCcHHHHHHHHHHHHcCC----------------CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc
Confidence 68899999999999987433 34578899999999999999998721 12234444444431
Q ss_pred -CCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEEEEEcC
Q 001995 255 -SEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRILVTTR 333 (985)
Q Consensus 255 -~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR 333 (985)
+......+ .+++.+.+... -..+++-++|+|+++..+...++.++..+.....++.+|++|.
T Consensus 69 ~~~~i~v~~-ir~~~~~~~~~----------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~ 131 (313)
T PRK05564 69 NKKSIGVDD-IRNIIEEVNKK----------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCE 131 (313)
T ss_pred cCCCCCHHH-HHHHHHHHhcC----------------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeC
Confidence 11122222 22222222111 1134566788888876667789999999998888899998886
Q ss_pred chhhH-HhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHH
Q 001995 334 NEKVA-IAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVK 399 (985)
Q Consensus 334 ~~~v~-~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~ 399 (985)
+.+.. ..... ....+++.++++++....+.+...+. . .+.+..++..++|.|.-+.
T Consensus 132 ~~~~ll~TI~S-Rc~~~~~~~~~~~~~~~~l~~~~~~~----~-----~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 132 NLEQILDTIKS-RCQIYKLNRLSKEEIEKFISYKYNDI----K-----EEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred ChHhCcHHHHh-hceeeeCCCcCHHHHHHHHHHHhcCC----C-----HHHHHHHHHHcCCCHHHHH
Confidence 55321 11111 12688999999999988886643211 1 1236678899999887554
No 47
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.51 E-value=2.3e-06 Score=98.07 Aligned_cols=178 Identities=18% Similarity=0.255 Sum_probs=113.3
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhh---------------
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVR--------------- 243 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~--------------- 243 (985)
+++|.+...+.|.+++..+. -...+.++|+.|+||||+|+.+++.-.-.
T Consensus 16 dVIGQe~vv~~L~~aI~~gr----------------l~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~ 79 (702)
T PRK14960 16 ELVGQNHVSRALSSALERGR----------------LHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCK 79 (702)
T ss_pred HhcCcHHHHHHHHHHHHcCC----------------CCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHH
Confidence 78999999999999997433 34688999999999999999998631100
Q ss_pred ----ccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHH----HhcCceEEEEecCCCCCCcccHHHH
Q 001995 244 ----NHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRE----SIEGKKFFLVLDDVWTEEPQNWEQL 315 (985)
Q Consensus 244 ----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~----~l~~k~~LlVlDdv~~~~~~~~~~l 315 (985)
+.|..++.++.+.. ...+++.+.+.. -..++.-++|+|++........+.+
T Consensus 80 ~I~~g~hpDviEIDAAs~---------------------~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NAL 138 (702)
T PRK14960 80 AVNEGRFIDLIEIDAASR---------------------TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNAL 138 (702)
T ss_pred HHhcCCCCceEEeccccc---------------------CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHH
Confidence 11111222222111 122222221111 1135667999999987776778888
Q ss_pred HhhhcCCCCCcEEEEEcCchh-hHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCC
Q 001995 316 LGCLRCGSKESRILVTTRNEK-VAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGL 394 (985)
Q Consensus 316 ~~~l~~~~~gs~ilvTtR~~~-v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~I~~~~~Gl 394 (985)
+..+.....+.++|++|.+.. +..... .....+++.+++.++....+.+.+...+.. ...+....|++.++|.
T Consensus 139 LKtLEEPP~~v~FILaTtd~~kIp~TIl-SRCq~feFkpLs~eEI~k~L~~Il~kEgI~-----id~eAL~~IA~~S~Gd 212 (702)
T PRK14960 139 LKTLEEPPEHVKFLFATTDPQKLPITVI-SRCLQFTLRPLAVDEITKHLGAILEKEQIA-----ADQDAIWQIAESAQGS 212 (702)
T ss_pred HHHHhcCCCCcEEEEEECChHhhhHHHH-HhhheeeccCCCHHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHcCCC
Confidence 888876666677777776532 221111 112688999999999999888766443221 2234577899999997
Q ss_pred hhHHH
Q 001995 395 PLAVK 399 (985)
Q Consensus 395 PLai~ 399 (985)
+-.+.
T Consensus 213 LRdAL 217 (702)
T PRK14960 213 LRDAL 217 (702)
T ss_pred HHHHH
Confidence 75443
No 48
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.49 E-value=2.3e-06 Score=101.19 Aligned_cols=183 Identities=16% Similarity=0.226 Sum_probs=113.7
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhcc-------------
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNH------------- 245 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~------------- 245 (985)
+++|-+..++.|.+++..+. -...+.++|+.|+||||+|+.+++.-.-...
T Consensus 17 dIIGQe~Iv~~LknaI~~~r----------------l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~ 80 (944)
T PRK14949 17 QMVGQSHVLHALTNALTQQR----------------LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCV 80 (944)
T ss_pred HhcCcHHHHHHHHHHHHhCC----------------CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHH
Confidence 78999999999999987432 2345689999999999999999873110000
Q ss_pred ------CCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHH-HhcCceEEEEecCCCCCCcccHHHHHhh
Q 001995 246 ------FNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRE-SIEGKKFFLVLDDVWTEEPQNWEQLLGC 318 (985)
Q Consensus 246 ------f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~ 318 (985)
|..++++.......+. .++.|. ..+.. ...+++-++|||++.......++.|+..
T Consensus 81 ~i~~g~~~DviEidAas~~kVD-dIReLi-----------------e~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKt 142 (944)
T PRK14949 81 EIAQGRFVDLIEVDAASRTKVD-DTRELL-----------------DNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKT 142 (944)
T ss_pred HHhcCCCceEEEeccccccCHH-HHHHHH-----------------HHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHH
Confidence 1111222111111111 111222 11111 1246778999999988777788888888
Q ss_pred hcCCCCCcEEEEEcCc-hhhHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhH
Q 001995 319 LRCGSKESRILVTTRN-EKVAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLA 397 (985)
Q Consensus 319 l~~~~~gs~ilvTtR~-~~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLa 397 (985)
+.......++|++|.+ ..+...+-. ....|++.+++.++..+.+.+.+...+. ....+....|++.++|.|--
T Consensus 143 LEEPP~~vrFILaTTe~~kLl~TIlS-RCq~f~fkpLs~eEI~~~L~~il~~EgI-----~~edeAL~lIA~~S~Gd~R~ 216 (944)
T PRK14949 143 LEEPPEHVKFLLATTDPQKLPVTVLS-RCLQFNLKSLTQDEIGTQLNHILTQEQL-----PFEAEALTLLAKAANGSMRD 216 (944)
T ss_pred HhccCCCeEEEEECCCchhchHHHHH-hheEEeCCCCCHHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHcCCCHHH
Confidence 8766666666666554 333322111 1268999999999999998876543221 11235578899999998864
Q ss_pred HHHH
Q 001995 398 VKTL 401 (985)
Q Consensus 398 i~~~ 401 (985)
+..+
T Consensus 217 ALnL 220 (944)
T PRK14949 217 ALSL 220 (944)
T ss_pred HHHH
Confidence 4333
No 49
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.48 E-value=2.8e-06 Score=98.46 Aligned_cols=180 Identities=13% Similarity=0.209 Sum_probs=114.3
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhh---------------
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVR--------------- 243 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~--------------- 243 (985)
++||.+..++.|.+++..+. -...+.++|..|+||||+|+.+.+.-.-.
T Consensus 17 EVIGQe~Vv~~L~~aL~~gR----------------L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr 80 (830)
T PRK07003 17 SLVGQEHVVRALTHALDGGR----------------LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACR 80 (830)
T ss_pred HHcCcHHHHHHHHHHHhcCC----------------CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHH
Confidence 78999999999999987432 34567799999999999999887631100
Q ss_pred ----ccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH----hcCceEEEEecCCCCCCcccHHHH
Q 001995 244 ----NHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRES----IEGKKFFLVLDDVWTEEPQNWEQL 315 (985)
Q Consensus 244 ----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l 315 (985)
+.|...++++.+.. ...+++.+.+... ..++.-++|||+++......|+.+
T Consensus 81 ~I~~G~h~DviEIDAas~---------------------rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NAL 139 (830)
T PRK07003 81 EIDEGRFVDYVEMDAASN---------------------RGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAM 139 (830)
T ss_pred HHhcCCCceEEEeccccc---------------------ccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHH
Confidence 11112222222211 1122222222211 124556899999988777778889
Q ss_pred HhhhcCCCCCcEEEEEcCchh-hHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCC
Q 001995 316 LGCLRCGSKESRILVTTRNEK-VAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGL 394 (985)
Q Consensus 316 ~~~l~~~~~gs~ilvTtR~~~-v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~I~~~~~Gl 394 (985)
+..+.......++|+||.+.. +...+. .....+++.+++.++..+.+.+.....+.. ...+....|++.++|.
T Consensus 140 LKtLEEPP~~v~FILaTtd~~KIp~TIr-SRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~-----id~eAL~lIA~~A~Gs 213 (830)
T PRK07003 140 LKTLEEPPPHVKFILATTDPQKIPVTVL-SRCLQFNLKQMPAGHIVSHLERILGEERIA-----FEPQALRLLARAAQGS 213 (830)
T ss_pred HHHHHhcCCCeEEEEEECChhhccchhh-hheEEEecCCcCHHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHcCCC
Confidence 988877666778887777643 221111 112679999999999999988866433221 1235578899999886
Q ss_pred h-hHHHHH
Q 001995 395 P-LAVKTL 401 (985)
Q Consensus 395 P-Lai~~~ 401 (985)
. -|+..+
T Consensus 214 mRdALsLL 221 (830)
T PRK07003 214 MRDALSLT 221 (830)
T ss_pred HHHHHHHH
Confidence 5 355443
No 50
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.46 E-value=1.4e-06 Score=83.93 Aligned_cols=125 Identities=19% Similarity=0.187 Sum_probs=73.6
Q ss_pred ecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCH
Q 001995 181 RGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDD 260 (985)
Q Consensus 181 vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 260 (985)
+|++..++.+...+.. .....+.|+|.+|+|||++|+.+++. ....-..++++........
T Consensus 1 ~~~~~~~~~i~~~~~~-----------------~~~~~v~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~~~~~~~ 61 (151)
T cd00009 1 VGQEEAIEALREALEL-----------------PPPKNLLLYGPPGTGKTTLARAIANE--LFRPGAPFLYLNASDLLEG 61 (151)
T ss_pred CchHHHHHHHHHHHhC-----------------CCCCeEEEECCCCCCHHHHHHHHHHH--hhcCCCCeEEEehhhhhhh
Confidence 3788888999888863 23468999999999999999999984 3222234667765543332
Q ss_pred HHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCCCcccHHHHHhhhcCC------CCCcEEEEEcCc
Q 001995 261 IRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTEEPQNWEQLLGCLRCG------SKESRILVTTRN 334 (985)
Q Consensus 261 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~------~~gs~ilvTtR~ 334 (985)
......+... ............++.++|+||++.........+...+... ..+..||+||..
T Consensus 62 ~~~~~~~~~~------------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~ 129 (151)
T cd00009 62 LVVAELFGHF------------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNR 129 (151)
T ss_pred hHHHHHhhhh------------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCc
Confidence 2211111100 0011111222456889999999753222333344434322 357788888886
Q ss_pred hh
Q 001995 335 EK 336 (985)
Q Consensus 335 ~~ 336 (985)
..
T Consensus 130 ~~ 131 (151)
T cd00009 130 PL 131 (151)
T ss_pred cc
Confidence 54
No 51
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=7.9e-06 Score=89.83 Aligned_cols=208 Identities=20% Similarity=0.249 Sum_probs=134.0
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCc--eEEEEeCC
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNE--KIWVCVSE 256 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~--~~wv~~~~ 256 (985)
.+.+||++++++...|...-. +..+.-+.|+|..|.|||+.++.+.. ++...... +++|++..
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~-------------~~~p~n~~iyG~~GTGKT~~~~~v~~--~l~~~~~~~~~~yINc~~ 82 (366)
T COG1474 18 ELPHREEEINQLASFLAPALR-------------GERPSNIIIYGPTGTGKTATVKFVME--ELEESSANVEVVYINCLE 82 (366)
T ss_pred cccccHHHHHHHHHHHHHHhc-------------CCCCccEEEECCCCCCHhHHHHHHHH--HHHhhhccCceEEEeeee
Confidence 588999999999998875431 22333499999999999999999998 44444322 68999999
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc--CceEEEEecCCCCCCcccHHHHHhhhcCCCC-CcEE--EEE
Q 001995 257 PFDDIRIAKAILESLKGSATNAVESETVLKQLRESIE--GKKFFLVLDDVWTEEPQNWEQLLGCLRCGSK-ESRI--LVT 331 (985)
Q Consensus 257 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~-gs~i--lvT 331 (985)
..+..+++..|+++++..+.......+....+.+.+. ++.+++|||++.......-+.+...+..... .++| |..
T Consensus 83 ~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i 162 (366)
T COG1474 83 LRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAV 162 (366)
T ss_pred CCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEE
Confidence 9999999999999998666666667777777777774 6899999999964222211334444443322 3443 333
Q ss_pred cCchhhHHhhcC-----cccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcC-CChhHHHHH
Q 001995 332 TRNEKVAIAIGT-----TKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCK-GLPLAVKTL 401 (985)
Q Consensus 332 tR~~~v~~~~~~-----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~I~~~~~-GlPLai~~~ 401 (985)
+-+......+.. -.+..+...|.+.+|-...+..++-..-.+....+..-+.+..++..-+ -.-.||..+
T Consensus 163 ~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidil 238 (366)
T COG1474 163 SNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDIL 238 (366)
T ss_pred eccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHH
Confidence 333333333221 1123477889999999999888764322211223333334444444444 444555444
No 52
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=3.5e-08 Score=104.49 Aligned_cols=214 Identities=23% Similarity=0.205 Sum_probs=129.6
Q ss_pred cccCCCCCeEecCCCCCccccch--hhcCCCCCcEeeccCccccccc---chhhhhccccceeecccccccccccCCCcC
Q 001995 621 IKKLIHLRYLALGENPWIKELPE--ALCELCNLQTLDVSLCHYLKRL---PERIGQLINLRHLMNSKEEWSRLSYMPRGM 695 (985)
Q Consensus 621 i~~l~~Lr~L~L~~~~~i~~lp~--~i~~L~~L~~L~l~~~~~l~~l---p~~i~~L~~L~~L~l~~~~~~~l~~lp~~i 695 (985)
=.++++||...|.++. +...+. -...|++++.|||++|- +... -.-...|++|+.|+++.|... .| +
T Consensus 117 Qsn~kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~NL-~~nw~~v~~i~eqLp~Le~LNls~Nrl~----~~--~ 188 (505)
T KOG3207|consen 117 QSNLKKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRNL-FHNWFPVLKIAEQLPSLENLNLSSNRLS----NF--I 188 (505)
T ss_pred hhhHHhhhheeecCcc-ccccchhhhhhhCCcceeecchhhh-HHhHHHHHHHHHhcccchhccccccccc----CC--c
Confidence 3578888999998888 777763 46678889999998875 3222 223356788888888754321 00 0
Q ss_pred CCCCCCCccCceEecCCCcccccCCchhhhccccCcceeeecccccccCCCCcchhhhcccccccccccEEEEEcCCCCc
Q 001995 696 ERLTGLRTLGAFVASGGKSSKACSSLKSLNKLKHLEGSLTLRGLGNERDLGDDNDDEKVDLKSKMKLVDLHLRFDSTTKT 775 (985)
Q Consensus 696 ~~l~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 775 (985)
++. .-..++ +|+.|.|+.|+.
T Consensus 189 ~s~---------------------~~~~l~-----------------------------------~lK~L~l~~CGl--- 209 (505)
T KOG3207|consen 189 SSN---------------------TTLLLS-----------------------------------HLKQLVLNSCGL--- 209 (505)
T ss_pred ccc---------------------chhhhh-----------------------------------hhheEEeccCCC---
Confidence 000 000122 223333333320
Q ss_pred chhHhhhcCCCCCCCCCeEEEeeccCCCCCCCChhhhccccccEEeEeccCCCC--cCCCCCCCCccceeeccCCCCceE
Q 001995 776 KDHRVVLECLQPPSSLEKLGIYGYAGDTISPTSDWMLSLAKLRVLTLRFCNECE--CLPPLGKLPCLETLVLEGMSSVKR 853 (985)
Q Consensus 776 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~--~l~~l~~l~~L~~L~L~~~~~l~~ 853 (985)
....+...+..+++|+.|.+.+|.+......+ ...+..|+.|+|++|+... ..+..+.||.|..|+++.|. +..
T Consensus 210 -s~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~--~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tg-i~s 285 (505)
T KOG3207|consen 210 -SWKDVQWILLTFPSLEVLYLEANEIILIKATS--TKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTG-IAS 285 (505)
T ss_pred -CHHHHHHHHHhCCcHHHhhhhcccccceecch--hhhhhHHhhccccCCcccccccccccccccchhhhhccccC-cch
Confidence 11223333445688888888888533332112 2357789999999997665 34678899999999998764 444
Q ss_pred eCCcccCCchhhhhhhhhhhcccccccCCCCCccceeeccccccccccccccccCcccccccccceeecccc
Q 001995 854 LGNGFLGIAEDHQARADQAETASSIIRDTAFPRLETLEFLDMEKWEEWDDCEIAGGKTIMPRLRHLSICWSP 925 (985)
Q Consensus 854 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~lp~L~~L~i~~c~ 925 (985)
+.. ..... ......||+|++|++.. +++.+|.... ....+++|+.|.+...+
T Consensus 286 i~~--~d~~s--------------~~kt~~f~kL~~L~i~~-N~I~~w~sl~---~l~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 286 IAE--PDVES--------------LDKTHTFPKLEYLNISE-NNIRDWRSLN---HLRTLENLKHLRITLNY 337 (505)
T ss_pred hcC--CCccc--------------hhhhcccccceeeeccc-Cccccccccc---hhhccchhhhhhccccc
Confidence 321 11100 00124699999999987 5667777644 44578899998876543
No 53
>PTZ00202 tuzin; Provisional
Probab=98.43 E-value=8.9e-06 Score=87.82 Aligned_cols=164 Identities=16% Similarity=0.261 Sum_probs=100.4
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 258 (985)
.|+||+.++..|...|...+ ....+++.|+|++|.|||||++.+..... + ..++++..
T Consensus 263 ~FVGReaEla~Lr~VL~~~d--------------~~~privvLtG~~G~GKTTLlR~~~~~l~----~-~qL~vNpr--- 320 (550)
T PTZ00202 263 QFVSREAEESWVRQVLRRLD--------------TAHPRIVVFTGFRGCGKSSLCRSAVRKEG----M-PAVFVDVR--- 320 (550)
T ss_pred CCCCcHHHHHHHHHHHhccC--------------CCCceEEEEECCCCCCHHHHHHHHHhcCC----c-eEEEECCC---
Confidence 89999999999999987544 23456999999999999999999996321 1 13333332
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh-----c-CceEEEEecCCCCCC-cccHHHHHhhhcCCCCCcEEEEE
Q 001995 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESI-----E-GKKFFLVLDDVWTEE-PQNWEQLLGCLRCGSKESRILVT 331 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~-~k~~LlVlDdv~~~~-~~~~~~l~~~l~~~~~gs~ilvT 331 (985)
+..++++.++.+|+..+. ....++...|.+.+ . |++.+||+-==...+ ...+.+. ..|.+...-+.|++-
T Consensus 321 g~eElLr~LL~ALGV~p~--~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~-v~la~drr~ch~v~e 397 (550)
T PTZ00202 321 GTEDTLRSVVKALGVPNV--EACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEV-VALACDRRLCHVVIE 397 (550)
T ss_pred CHHHHHHHHHHHcCCCCc--ccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHH-HHHHccchhheeeee
Confidence 779999999999986432 22233444444333 2 677777764221111 1122222 223344445667665
Q ss_pred cCchhhHHhhc-CcccccccCCCCChHHHHHHHHHHh
Q 001995 332 TRNEKVAIAIG-TTKFNIIPIELLSDEDCWSIFSQLA 367 (985)
Q Consensus 332 tR~~~v~~~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~ 367 (985)
--.+.+..... -....-|-+.+++.++|.++..+..
T Consensus 398 vpleslt~~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 398 VPLESLTIANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred ehHhhcchhcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 44333221111 1112468899999999988877643
No 54
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.43 E-value=4.5e-06 Score=92.99 Aligned_cols=198 Identities=14% Similarity=0.141 Sum_probs=109.2
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCC-ceEEEEeCCC
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFN-EKIWVCVSEP 257 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~ 257 (985)
+++|++..++.+..++.. +..+.+.++|+.|+||||+|+.+++... ...+. ..+.+++++-
T Consensus 16 ~~~g~~~~~~~L~~~~~~-----------------~~~~~lll~Gp~GtGKT~la~~~~~~l~-~~~~~~~~~~i~~~~~ 77 (337)
T PRK12402 16 DILGQDEVVERLSRAVDS-----------------PNLPHLLVQGPPGSGKTAAVRALARELY-GDPWENNFTEFNVADF 77 (337)
T ss_pred HhcCCHHHHHHHHHHHhC-----------------CCCceEEEECCCCCCHHHHHHHHHHHhc-CcccccceEEechhhh
Confidence 689999999999888863 2334578999999999999999987321 11222 2344444321
Q ss_pred CCH--HHHHH--HHHHHhcCC-CCCCCCHHHHHHHHHHHh-----cCceEEEEecCCCCCCcccHHHHHhhhcCCCCCcE
Q 001995 258 FDD--IRIAK--AILESLKGS-ATNAVESETVLKQLRESI-----EGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESR 327 (985)
Q Consensus 258 ~~~--~~~~~--~i~~~l~~~-~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 327 (985)
.+. ..+.. .....+... .......+.....++... .+.+-+||+||+..........+...+.......+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~ 157 (337)
T PRK12402 78 FDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCR 157 (337)
T ss_pred hhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCe
Confidence 100 00000 000000000 000011122221121111 13455899999965544445556666654455567
Q ss_pred EEEEcCch-hhHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHHH
Q 001995 328 ILVTTRNE-KVAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVKT 400 (985)
Q Consensus 328 ilvTtR~~-~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~ 400 (985)
+|+||... .+...+... ...+.+.+++.++...++.+.+...+.. -..+....+++.++|.+-.+..
T Consensus 158 ~Il~~~~~~~~~~~L~sr-~~~v~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 158 FIIATRQPSKLIPPIRSR-CLPLFFRAPTDDELVDVLESIAEAEGVD-----YDDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred EEEEeCChhhCchhhcCC-ceEEEecCCCHHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHcCCCHHHHHH
Confidence 88777543 222222211 2578889999999999888865443321 1235677888889887655443
No 55
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.43 E-value=4.7e-06 Score=95.39 Aligned_cols=199 Identities=15% Similarity=0.211 Sum_probs=113.6
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 258 (985)
++||-+..++.|.+++..+. -...+.++|..|+||||+|+.+.+.-.-...-...- + .+..+
T Consensus 17 dVIGQe~vv~~L~~al~~gR----------------LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g-~-~~~PC 78 (700)
T PRK12323 17 TLVGQEHVVRALTHALEQQR----------------LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGG-I-TAQPC 78 (700)
T ss_pred HHcCcHHHHHHHHHHHHhCC----------------CceEEEEECCCCCCHHHHHHHHHHHhcCCCcccccc-C-CCCCC
Confidence 78999999999999997443 345778999999999999999876311000000000 0 00000
Q ss_pred CHHHHHHHHHHH-----hcCCCCCCCCHHHHHHHHHHH----hcCceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEEE
Q 001995 259 DDIRIAKAILES-----LKGSATNAVESETVLKQLRES----IEGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRIL 329 (985)
Q Consensus 259 ~~~~~~~~i~~~-----l~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~il 329 (985)
..-...+.|... +..+.......+++.+.+... ..++.-++|||+++......++.|+..+.......++|
T Consensus 79 G~C~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FI 158 (700)
T PRK12323 79 GQCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFI 158 (700)
T ss_pred cccHHHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEE
Confidence 000011111000 000000112233333222221 14566799999998877778888888887655555655
Q ss_pred EE-cCchhhHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHHHH
Q 001995 330 VT-TRNEKVAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVKTL 401 (985)
Q Consensus 330 vT-tR~~~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~ 401 (985)
++ |....+...+.. ....+.+..++.++..+.+.+.....+.. ...+....|++.++|.|.....+
T Consensus 159 LaTtep~kLlpTIrS-RCq~f~f~~ls~eei~~~L~~Il~~Egi~-----~d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 159 LATTDPQKIPVTVLS-RCLQFNLKQMPPGHIVSHLDAILGEEGIA-----HEVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred EEeCChHhhhhHHHH-HHHhcccCCCChHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 55 444444322211 12689999999999999888765433211 11245678999999998754443
No 56
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.39 E-value=6.8e-07 Score=95.36 Aligned_cols=238 Identities=20% Similarity=0.205 Sum_probs=157.4
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceE-EEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh
Q 001995 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKI-WVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESI 292 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~-wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 292 (985)
...+.+.++|.|||||||++-.+.. +...|...+ ++....-.+...+.-.+...++.... +.+.....+....
T Consensus 12 ~~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~---~g~~~~~~~~~~~ 85 (414)
T COG3903 12 TALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQ---PGDSAVDTLVRRI 85 (414)
T ss_pred hhhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhcccccc---cchHHHHHHHHHH
Confidence 3568999999999999999988886 566787655 45555555555555555555554321 2233444566677
Q ss_pred cCceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEEEEEcCchhhHHhhcCcccccccCCCCChH-HHHHHHHHHhcCCC
Q 001995 293 EGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRILVTTRNEKVAIAIGTTKFNIIPIELLSDE-DCWSIFSQLALSRR 371 (985)
Q Consensus 293 ~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~~~~~~~~~l~~L~~~-e~~~Lf~~~~~~~~ 371 (985)
.++|.++|+||-.+. .+.-..+...+..+...-.|+.|+|...... +...+.+.+|+.. ++.++|...+....
T Consensus 86 ~~rr~llvldncehl-~~~~a~~i~all~~~~~~~~~atsre~~l~~-----ge~~~~~~~L~~~d~a~~lf~~ra~~~~ 159 (414)
T COG3903 86 GDRRALLVLDNCEHL-LDACAALIVALLGACPRLAILATSREAILVA-----GEVHRRVPSLSLFDEAIELFVCRAVLVA 159 (414)
T ss_pred hhhhHHHHhcCcHHH-HHHHHHHHHHHHccchhhhhHHHhHhhhccc-----ccccccCCccccCCchhHHHHHHHHHhc
Confidence 889999999998321 1112223333444444456888888654321 2256778888765 78889887765444
Q ss_pred CCcccchhHHHHHHHHHHhcCCChhHHHHHHhhhhcCCChHHHHHHHHhhhhhhhcc-------ccccchhhhcccCCCC
Q 001995 372 LDIEESENFENIGRQIVSKCKGLPLAVKTLGSLLRFKGKIEEWQRVLENELWELEEL-------DEGLLGPLLLSYLDLP 444 (985)
Q Consensus 372 ~~~~~~~~~~~~~~~I~~~~~GlPLai~~~~~~L~~~~~~~~w~~~~~~~~~~~~~~-------~~~i~~~l~~sy~~L~ 444 (985)
............+.+|.++.+|.|++|..+++..+.- ...+-...+.+....+.+. .+.....+.+||.-|.
T Consensus 160 ~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl-~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLt 238 (414)
T COG3903 160 LSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSL-SPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLT 238 (414)
T ss_pred cceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhc-CHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhh
Confidence 3333445556778999999999999999999988643 3333333333322222222 2457889999999999
Q ss_pred cchhHHHhhhccCCCCcccC
Q 001995 445 PPLKKCFSYCAIFPKDSRLE 464 (985)
Q Consensus 445 ~~~k~cfl~~a~fp~~~~i~ 464 (985)
...+--|.-++.|...+...
T Consensus 239 gwe~~~~~rLa~~~g~f~~~ 258 (414)
T COG3903 239 GWERALFGRLAVFVGGFDLG 258 (414)
T ss_pred hHHHHHhcchhhhhhhhccc
Confidence 99999999999998776544
No 57
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.39 E-value=1e-06 Score=100.99 Aligned_cols=194 Identities=19% Similarity=0.196 Sum_probs=113.1
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 258 (985)
+++|-+...+.|..++..+. -...+.++|++|+||||+|+.+++.-.-.+.+....|.|.+-.
T Consensus 15 dvvGq~~v~~~L~~~i~~~~----------------l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~- 77 (504)
T PRK14963 15 EVVGQEHVKEVLLAALRQGR----------------LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCL- 77 (504)
T ss_pred HhcChHHHHHHHHHHHHcCC----------------CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhH-
Confidence 68999999888988887432 3356799999999999999999874221122222222221100
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh-----cCceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEEEEEcC
Q 001995 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESI-----EGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRILVTTR 333 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR 333 (985)
........-+..+.. ......+.+.. +.+.+ .+++-++|+|+++......++.++..+........+|++|.
T Consensus 78 ~i~~~~h~dv~el~~--~~~~~vd~iR~-l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~ 154 (504)
T PRK14963 78 AVRRGAHPDVLEIDA--ASNNSVEDVRD-LREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATT 154 (504)
T ss_pred HHhcCCCCceEEecc--cccCCHHHHHH-HHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcC
Confidence 000000000000000 01111222211 22222 35667999999987666678888888876555555555554
Q ss_pred -chhhHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHH
Q 001995 334 -NEKVAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAV 398 (985)
Q Consensus 334 -~~~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai 398 (985)
...+...+... ...+++.+++.++....+.+.+...+.. ...+....|++.++|.+--+
T Consensus 155 ~~~kl~~~I~SR-c~~~~f~~ls~~el~~~L~~i~~~egi~-----i~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 155 EPEKMPPTILSR-TQHFRFRRLTEEEIAGKLRRLLEAEGRE-----AEPEALQLVARLADGAMRDA 214 (504)
T ss_pred ChhhCChHHhcc-eEEEEecCCCHHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHcCCCHHHH
Confidence 33333322221 2579999999999999998876543321 12356788999999988644
No 58
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.39 E-value=1.8e-06 Score=95.07 Aligned_cols=195 Identities=14% Similarity=0.103 Sum_probs=115.3
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCc----------
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNE---------- 248 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~---------- 248 (985)
+++|.+...+.+.+.+..+. -...+.++|+.|+||+|+|..+++.-.-......
T Consensus 20 ~iiGq~~~~~~L~~~~~~~r----------------l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l 83 (365)
T PRK07471 20 ALFGHAAAEAALLDAYRSGR----------------LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSL 83 (365)
T ss_pred hccChHHHHHHHHHHHHcCC----------------CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccc
Confidence 79999999999999987443 3457899999999999999888762100000000
Q ss_pred --------eEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh-----cCceEEEEecCCCCCCcccHHHH
Q 001995 249 --------KIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESI-----EGKKFFLVLDDVWTEEPQNWEQL 315 (985)
Q Consensus 249 --------~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l 315 (985)
.-|+..+..+|...+.... ..-+.........+++. .+.+.+ .+.+-++|+|+++..+....+.+
T Consensus 84 ~~~~~c~~c~~i~~~~HPDl~~i~~~~-~~~~~~~~~~I~VdqiR-~l~~~~~~~~~~~~~kVviIDead~m~~~aanaL 161 (365)
T PRK07471 84 AIDPDHPVARRIAAGAHGGLLTLERSW-NEKGKRLRTVITVDEVR-ELISFFGLTAAEGGWRVVIVDTADEMNANAANAL 161 (365)
T ss_pred cCCCCChHHHHHHccCCCCeEEEeccc-ccccccccccccHHHHH-HHHHHhCcCcccCCCEEEEEechHhcCHHHHHHH
Confidence 0011111111111000000 00000000112344432 333333 25677999999988888888888
Q ss_pred HhhhcCCCCCcEEEEEcCchh-hHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCC
Q 001995 316 LGCLRCGSKESRILVTTRNEK-VAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGL 394 (985)
Q Consensus 316 ~~~l~~~~~gs~ilvTtR~~~-v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~I~~~~~Gl 394 (985)
+..+.....++.+|++|.... +..... .....+.+.+++.++..+++.+..... .+ .....+++.++|.
T Consensus 162 LK~LEepp~~~~~IL~t~~~~~llpti~-SRc~~i~l~~l~~~~i~~~L~~~~~~~------~~---~~~~~l~~~s~Gs 231 (365)
T PRK07471 162 LKVLEEPPARSLFLLVSHAPARLLPTIR-SRCRKLRLRPLAPEDVIDALAAAGPDL------PD---DPRAALAALAEGS 231 (365)
T ss_pred HHHHhcCCCCeEEEEEECCchhchHHhh-ccceEEECCCCCHHHHHHHHHHhcccC------CH---HHHHHHHHHcCCC
Confidence 888886666666777776653 322221 123689999999999999998754211 11 1126789999999
Q ss_pred hhHHHHH
Q 001995 395 PLAVKTL 401 (985)
Q Consensus 395 PLai~~~ 401 (985)
|.....+
T Consensus 232 p~~Al~l 238 (365)
T PRK07471 232 VGRALRL 238 (365)
T ss_pred HHHHHHH
Confidence 9866544
No 59
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.37 E-value=9.5e-06 Score=93.29 Aligned_cols=186 Identities=20% Similarity=0.248 Sum_probs=113.6
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhh----------------
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEV---------------- 242 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~---------------- 242 (985)
+++|-+..++.|...+..+. -...+.++|+.|+||||+|+.+++.-.-
T Consensus 17 diiGq~~~v~~L~~~i~~~r----------------l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~ 80 (546)
T PRK14957 17 EVAGQQHALNSLVHALETQK----------------VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCV 80 (546)
T ss_pred HhcCcHHHHHHHHHHHHcCC----------------CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHH
Confidence 78999999999999887432 3456789999999999999999862110
Q ss_pred ---hccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH-hcCceEEEEecCCCCCCcccHHHHHhh
Q 001995 243 ---RNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRES-IEGKKFFLVLDDVWTEEPQNWEQLLGC 318 (985)
Q Consensus 243 ---~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~ 318 (985)
.+.|...+++.......... ..++.+.+... ..+++-++|+|++.......++.++..
T Consensus 81 ~i~~~~~~dlieidaas~~gvd~------------------ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~ 142 (546)
T PRK14957 81 AINNNSFIDLIEIDAASRTGVEE------------------TKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKT 142 (546)
T ss_pred HHhcCCCCceEEeecccccCHHH------------------HHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHH
Confidence 01122333333222111111 11222222211 245677999999987777778888888
Q ss_pred hcCCCCCcEEEE-EcCchhhHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChh-
Q 001995 319 LRCGSKESRILV-TTRNEKVAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPL- 396 (985)
Q Consensus 319 l~~~~~gs~ilv-TtR~~~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPL- 396 (985)
+......+.+|+ ||....+...+.. ....+++.+++.++....+.+.+...+. .........|++.++|.+-
T Consensus 143 LEepp~~v~fIL~Ttd~~kil~tI~S-Rc~~~~f~~Ls~~eI~~~L~~il~~egi-----~~e~~Al~~Ia~~s~GdlR~ 216 (546)
T PRK14957 143 LEEPPEYVKFILATTDYHKIPVTILS-RCIQLHLKHISQADIKDQLKIILAKENI-----NSDEQSLEYIAYHAKGSLRD 216 (546)
T ss_pred HhcCCCCceEEEEECChhhhhhhHHH-heeeEEeCCCCHHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHcCCCHHH
Confidence 887666666664 5443333322111 1268999999999988887775433221 1123456788999999664
Q ss_pred HHHHHHhh
Q 001995 397 AVKTLGSL 404 (985)
Q Consensus 397 ai~~~~~~ 404 (985)
|+..+-.+
T Consensus 217 alnlLek~ 224 (546)
T PRK14957 217 ALSLLDQA 224 (546)
T ss_pred HHHHHHHH
Confidence 55444433
No 60
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.37 E-value=6.4e-06 Score=81.67 Aligned_cols=178 Identities=22% Similarity=0.286 Sum_probs=98.8
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 258 (985)
+|||-+.-++.+.-++.... .. .....-+.+||++|+||||||+-+++ .....|. +.+...
T Consensus 25 efiGQ~~l~~~l~i~i~aa~----------~r--~~~l~h~lf~GPPG~GKTTLA~IIA~--e~~~~~~---~~sg~~-- 85 (233)
T PF05496_consen 25 EFIGQEHLKGNLKILIRAAK----------KR--GEALDHMLFYGPPGLGKTTLARIIAN--ELGVNFK---ITSGPA-- 85 (233)
T ss_dssp CS-S-HHHHHHHHHHHHHHH----------CT--TS---EEEEESSTTSSHHHHHHHHHH--HCT--EE---EEECCC--
T ss_pred HccCcHHHHhhhHHHHHHHH----------hc--CCCcceEEEECCCccchhHHHHHHHh--ccCCCeE---eccchh--
Confidence 79999988888765554221 00 24567899999999999999999998 4444442 222211
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCCCcccHHHHHhhhcCCC------C--------
Q 001995 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTEEPQNWEQLLGCLRCGS------K-------- 324 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~------~-------- 324 (985)
.....++...+.. + +++-+|++|.++..+...-+.+..++.++. .
T Consensus 86 -------------------i~k~~dl~~il~~-l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~ 144 (233)
T PF05496_consen 86 -------------------IEKAGDLAAILTN-L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIR 144 (233)
T ss_dssp ---------------------SCHHHHHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEE
T ss_pred -------------------hhhHHHHHHHHHh-c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceee
Confidence 0111222222221 2 245578889998877666666776665431 1
Q ss_pred -----CcEEEEEcCchhhHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHH
Q 001995 325 -----ESRILVTTRNEKVAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVK 399 (985)
Q Consensus 325 -----gs~ilvTtR~~~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~ 399 (985)
-+-|=-|||...+...+...-....+++..+.+|-..+..+.+..-.. +-.++.+.+|++++.|-|--..
T Consensus 145 ~~l~~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i-----~i~~~~~~~Ia~rsrGtPRiAn 219 (233)
T PF05496_consen 145 INLPPFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNI-----EIDEDAAEEIARRSRGTPRIAN 219 (233)
T ss_dssp EE----EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT------EE-HHHHHHHHHCTTTSHHHHH
T ss_pred ccCCCceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCC-----CcCHHHHHHHHHhcCCChHHHH
Confidence 123556788765554443321124579999999999999886654332 2234679999999999996444
Q ss_pred HH
Q 001995 400 TL 401 (985)
Q Consensus 400 ~~ 401 (985)
-+
T Consensus 220 rl 221 (233)
T PF05496_consen 220 RL 221 (233)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 61
>PF13173 AAA_14: AAA domain
Probab=98.37 E-value=1.4e-06 Score=81.42 Aligned_cols=121 Identities=23% Similarity=0.300 Sum_probs=78.4
Q ss_pred EEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCce
Q 001995 217 TIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKK 296 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 296 (985)
+++.|.|+-|+|||||+++++.+.. ....+++++..+....... ..+ ..+.+.+....++
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~----------------~~~-~~~~~~~~~~~~~ 62 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLA----------------DPD-LLEYFLELIKPGK 62 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHh----------------hhh-hHHHHHHhhccCC
Confidence 6899999999999999999997422 3345777776543221000 000 2233333334478
Q ss_pred EEEEecCCCCCCcccHHHHHhhhcCCCCCcEEEEEcCchhhHHhhc----CcccccccCCCCChHHH
Q 001995 297 FFLVLDDVWTEEPQNWEQLLGCLRCGSKESRILVTTRNEKVAIAIG----TTKFNIIPIELLSDEDC 359 (985)
Q Consensus 297 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~----~~~~~~~~l~~L~~~e~ 359 (985)
.+++||++.. ...|......+.......+|++|+........-. ......+++.||+..|.
T Consensus 63 ~~i~iDEiq~--~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 63 KYIFIDEIQY--LPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred cEEEEehhhh--hccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 8999999954 3578777777766556679999998776553211 11225688999988763
No 62
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.35 E-value=7.5e-06 Score=95.00 Aligned_cols=179 Identities=13% Similarity=0.226 Sum_probs=110.5
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhh---------------
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVR--------------- 243 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~--------------- 243 (985)
+++|.+..++.|..++..+. -...+.++|+.|+||||+|+.++..-.-.
T Consensus 17 dIIGQe~vv~~L~~ai~~~r----------------l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr 80 (709)
T PRK08691 17 DLVGQEHVVKALQNALDEGR----------------LHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCT 80 (709)
T ss_pred HHcCcHHHHHHHHHHHHcCC----------------CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHH
Confidence 79999999999999987432 34578999999999999999987631100
Q ss_pred ----ccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH----hcCceEEEEecCCCCCCcccHHHH
Q 001995 244 ----NHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRES----IEGKKFFLVLDDVWTEEPQNWEQL 315 (985)
Q Consensus 244 ----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l 315 (985)
+.|...+.+.... ....+.+.+.+... ..+++-++|+|++........+.+
T Consensus 81 ~i~~g~~~DvlEidaAs---------------------~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NAL 139 (709)
T PRK08691 81 QIDAGRYVDLLEIDAAS---------------------NTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAM 139 (709)
T ss_pred HHhccCccceEEEeccc---------------------cCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHH
Confidence 0011111222111 11122222222111 135667999999976665567778
Q ss_pred HhhhcCCCCCcEEEEEcCch-hhHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCC
Q 001995 316 LGCLRCGSKESRILVTTRNE-KVAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGL 394 (985)
Q Consensus 316 ~~~l~~~~~gs~ilvTtR~~-~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~I~~~~~Gl 394 (985)
+..+.......++|++|.+. .+...+. .....+.+.+++.++....+.+.+-..+.. -..+....|++.++|.
T Consensus 140 LKtLEEPp~~v~fILaTtd~~kL~~TIr-SRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~-----id~eAL~~Ia~~A~Gs 213 (709)
T PRK08691 140 LKTLEEPPEHVKFILATTDPHKVPVTVL-SRCLQFVLRNMTAQQVADHLAHVLDSEKIA-----YEPPALQLLGRAAAGS 213 (709)
T ss_pred HHHHHhCCCCcEEEEEeCCccccchHHH-HHHhhhhcCCCCHHHHHHHHHHHHHHcCCC-----cCHHHHHHHHHHhCCC
Confidence 88876555556677666543 2221111 112578899999999999888766543321 1234578899999998
Q ss_pred hhHHHH
Q 001995 395 PLAVKT 400 (985)
Q Consensus 395 PLai~~ 400 (985)
+.-+..
T Consensus 214 lRdAln 219 (709)
T PRK08691 214 MRDALS 219 (709)
T ss_pred HHHHHH
Confidence 854433
No 63
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.35 E-value=1e-05 Score=89.24 Aligned_cols=181 Identities=14% Similarity=0.135 Sum_probs=107.0
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEe--CC
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCV--SE 256 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~--~~ 256 (985)
+++|+++.++.+..++..+ ..+.+.|+|..|+||||+|+.+++.. ....+. ..++.+ +.
T Consensus 18 ~~~g~~~~~~~l~~~i~~~-----------------~~~~~ll~G~~G~GKt~~~~~l~~~l-~~~~~~-~~~i~~~~~~ 78 (319)
T PRK00440 18 EIVGQEEIVERLKSYVKEK-----------------NMPHLLFAGPPGTGKTTAALALAREL-YGEDWR-ENFLELNASD 78 (319)
T ss_pred HhcCcHHHHHHHHHHHhCC-----------------CCCeEEEECCCCCCHHHHHHHHHHHH-cCCccc-cceEEecccc
Confidence 6899999999999998632 33457999999999999999998731 111221 122322 22
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEEEEEcCch-
Q 001995 257 PFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRILVTTRNE- 335 (985)
Q Consensus 257 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~- 335 (985)
..... .....+..+....+ .....+-++|+|++..........+...+......+++|+++...
T Consensus 79 ~~~~~-~~~~~i~~~~~~~~--------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~ 143 (319)
T PRK00440 79 ERGID-VIRNKIKEFARTAP--------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSS 143 (319)
T ss_pred ccchH-HHHHHHHHHHhcCC--------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCcc
Confidence 11111 11111111111000 001235689999996654445566777666555566777776432
Q ss_pred hhHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHH
Q 001995 336 KVAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVK 399 (985)
Q Consensus 336 ~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~ 399 (985)
.+....... ...+++.+++.++....+.+.+...+.. -..+....+++.++|.+--+.
T Consensus 144 ~l~~~l~sr-~~~~~~~~l~~~ei~~~l~~~~~~~~~~-----i~~~al~~l~~~~~gd~r~~~ 201 (319)
T PRK00440 144 KIIDPIQSR-CAVFRFSPLKKEAVAERLRYIAENEGIE-----ITDDALEAIYYVSEGDMRKAI 201 (319)
T ss_pred ccchhHHHH-hheeeeCCCCHHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHcCCCHHHHH
Confidence 221111111 1468899999999988888876543321 113457788999999876543
No 64
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.34 E-value=8.5e-06 Score=89.25 Aligned_cols=193 Identities=17% Similarity=0.243 Sum_probs=116.8
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhcc----CCceEEEEe
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNH----FNEKIWVCV 254 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~~ 254 (985)
.++|-+...+.+...+..+. -...+.|+|+.|+||||+|..+++. +-.+ +... ..
T Consensus 24 ~l~Gh~~a~~~L~~a~~~gr----------------l~ha~L~~G~~G~GKttlA~~lA~~--Llc~~~~~~~~~---~~ 82 (351)
T PRK09112 24 RLFGHEEAEAFLAQAYREGK----------------LHHALLFEGPEGIGKATLAFHLANH--ILSHPDPAEAPE---TL 82 (351)
T ss_pred hccCcHHHHHHHHHHHHcCC----------------CCeeEeeECCCCCCHHHHHHHHHHH--HcCCCccccCcc---cc
Confidence 79999999999999997443 3457999999999999999998873 2110 1110 00
Q ss_pred CCCCCHHHHHHHHHHH-------hcCC--C-----CCCCCHHHHHHHHHHHh-----cCceEEEEecCCCCCCcccHHHH
Q 001995 255 SEPFDDIRIAKAILES-------LKGS--A-----TNAVESETVLKQLRESI-----EGKKFFLVLDDVWTEEPQNWEQL 315 (985)
Q Consensus 255 ~~~~~~~~~~~~i~~~-------l~~~--~-----~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l 315 (985)
..........+.+... +... . ......+++. .+.+.+ .+++-++|+|+++..+....+.+
T Consensus 83 ~~~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaL 161 (351)
T PRK09112 83 ADPDPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAI 161 (351)
T ss_pred CCCCCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHH
Confidence 1111111222333221 1000 0 1112234433 334443 35677999999988777778888
Q ss_pred HhhhcCCCCCcE-EEEEcCchhhHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCC
Q 001995 316 LGCLRCGSKESR-ILVTTRNEKVAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGL 394 (985)
Q Consensus 316 ~~~l~~~~~gs~-ilvTtR~~~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~I~~~~~Gl 394 (985)
+..+........ |++|++...+...... ....+++.+++.++..+++.+..... . ...+.+..|++.++|.
T Consensus 162 Lk~LEEpp~~~~fiLit~~~~~llptIrS-Rc~~i~l~pl~~~~~~~~L~~~~~~~------~-~~~~~~~~i~~~s~G~ 233 (351)
T PRK09112 162 LKTLEEPPARALFILISHSSGRLLPTIRS-RCQPISLKPLDDDELKKALSHLGSSQ------G-SDGEITEALLQRSKGS 233 (351)
T ss_pred HHHHhcCCCCceEEEEECChhhccHHHHh-hccEEEecCCCHHHHHHHHHHhhccc------C-CCHHHHHHHHHHcCCC
Confidence 888876544455 4555444333322222 12689999999999999998743211 1 1133467899999999
Q ss_pred hhHHHHH
Q 001995 395 PLAVKTL 401 (985)
Q Consensus 395 PLai~~~ 401 (985)
|.....+
T Consensus 234 pr~Al~l 240 (351)
T PRK09112 234 VRKALLL 240 (351)
T ss_pred HHHHHHH
Confidence 9865544
No 65
>PLN03025 replication factor C subunit; Provisional
Probab=98.34 E-value=1.4e-05 Score=87.62 Aligned_cols=182 Identities=14% Similarity=0.169 Sum_probs=106.5
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCc-eEEEEeCCC
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNE-KIWVCVSEP 257 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~-~~wv~~~~~ 257 (985)
+++|.++.++.|..++..+ +.+-+.++|++|+||||+|+.+++.. ....|.. ++-++.++.
T Consensus 14 ~~~g~~~~~~~L~~~~~~~-----------------~~~~lll~Gp~G~GKTtla~~la~~l-~~~~~~~~~~eln~sd~ 75 (319)
T PLN03025 14 DIVGNEDAVSRLQVIARDG-----------------NMPNLILSGPPGTGKTTSILALAHEL-LGPNYKEAVLELNASDD 75 (319)
T ss_pred HhcCcHHHHHHHHHHHhcC-----------------CCceEEEECCCCCCHHHHHHHHHHHH-hcccCccceeeeccccc
Confidence 6889988888888776532 33447799999999999999998731 1222321 222222222
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEEEEEcCch-h
Q 001995 258 FDDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRILVTTRNE-K 336 (985)
Q Consensus 258 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~ 336 (985)
.+.. ..+.+++.+...... .-.++.-++|+|+++.........+...+......+++|+++... .
T Consensus 76 ~~~~-~vr~~i~~~~~~~~~-------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~ 141 (319)
T PLN03025 76 RGID-VVRNKIKMFAQKKVT-------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSK 141 (319)
T ss_pred ccHH-HHHHHHHHHHhcccc-------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccc
Confidence 2211 222222221110000 002456799999997766555566666665545567777766542 2
Q ss_pred hHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHH
Q 001995 337 VAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAV 398 (985)
Q Consensus 337 v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai 398 (985)
+...+... ...+++.++++++....+...+-..+.. . ..+....|++.++|..-.+
T Consensus 142 i~~~L~SR-c~~i~f~~l~~~~l~~~L~~i~~~egi~--i---~~~~l~~i~~~~~gDlR~a 197 (319)
T PLN03025 142 IIEPIQSR-CAIVRFSRLSDQEILGRLMKVVEAEKVP--Y---VPEGLEAIIFTADGDMRQA 197 (319)
T ss_pred cchhHHHh-hhcccCCCCCHHHHHHHHHHHHHHcCCC--C---CHHHHHHHHHHcCCCHHHH
Confidence 21111111 1578999999999999888776543321 1 1345778889998876433
No 66
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.33 E-value=1.8e-05 Score=90.40 Aligned_cols=194 Identities=17% Similarity=0.209 Sum_probs=113.1
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCc-eEEEEeCCC
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNE-KIWVCVSEP 257 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~-~~wv~~~~~ 257 (985)
+++|-+..+..|...+..+. -...+.++|+.|+||||+|+.+++.-.-...... -.+..+...
T Consensus 22 dliGq~~vv~~L~~ai~~~r----------------i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C 85 (507)
T PRK06645 22 ELQGQEVLVKVLSYTILNDR----------------LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQC 85 (507)
T ss_pred HhcCcHHHHHHHHHHHHcCC----------------CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCC
Confidence 68999999998888776332 3457899999999999999999873111000000 000000000
Q ss_pred CCHHHHHHHHHHHhc-----CCCCCCCCHHHHHHHHHHH----hcCceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEE
Q 001995 258 FDDIRIAKAILESLK-----GSATNAVESETVLKQLRES----IEGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRI 328 (985)
Q Consensus 258 ~~~~~~~~~i~~~l~-----~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 328 (985)
.....+..... .+.......+++...+... +.+++-++|+|+++......++.+...+......+.+
T Consensus 86 ----~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vf 161 (507)
T PRK06645 86 ----TNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIF 161 (507)
T ss_pred ----hHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEE
Confidence 00011100000 0000111223332222211 2356779999999887777888898888866666666
Q ss_pred EE-EcCchhhHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHH
Q 001995 329 LV-TTRNEKVAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAV 398 (985)
Q Consensus 329 lv-TtR~~~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai 398 (985)
|+ ||+...+...+... ...+++.+++.++....+.+.+...+.. -..+....|++.++|.+--+
T Consensus 162 I~aTte~~kI~~tI~SR-c~~~ef~~ls~~el~~~L~~i~~~egi~-----ie~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 162 IFATTEVQKIPATIISR-CQRYDLRRLSFEEIFKLLEYITKQENLK-----TDIEALRIIAYKSEGSARDA 226 (507)
T ss_pred EEEeCChHHhhHHHHhc-ceEEEccCCCHHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHcCCCHHHH
Confidence 54 55554544433221 2578999999999999998877543321 12345677999999977544
No 67
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.32 E-value=9.3e-06 Score=94.78 Aligned_cols=194 Identities=17% Similarity=0.233 Sum_probs=113.4
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 258 (985)
++||-+..++.|...+..+. -...+.++|..|+||||+|+.+++. +.... +. ....+
T Consensus 17 divGQe~vv~~L~~~l~~~r----------------l~hAyLf~Gp~GvGKTTlAr~lAk~--L~c~~----~~-~~~pC 73 (647)
T PRK07994 17 EVVGQEHVLTALANALDLGR----------------LHHAYLFSGTRGVGKTTIARLLAKG--LNCET----GI-TATPC 73 (647)
T ss_pred HhcCcHHHHHHHHHHHHcCC----------------CCeEEEEECCCCCCHHHHHHHHHHh--hhhcc----CC-CCCCC
Confidence 78999999999999887432 2355789999999999999999873 21100 00 00011
Q ss_pred CHHHHHHHHHHHhc-----CCCCCCCCHHHHHHHHHH----HhcCceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEEE
Q 001995 259 DDIRIAKAILESLK-----GSATNAVESETVLKQLRE----SIEGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRIL 329 (985)
Q Consensus 259 ~~~~~~~~i~~~l~-----~~~~~~~~~~~~~~~l~~----~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~il 329 (985)
..-...+.|...-. .........+++...+.. -..+++-++|+|+++.......+.|+..+.......++|
T Consensus 74 g~C~~C~~i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FI 153 (647)
T PRK07994 74 GECDNCREIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFL 153 (647)
T ss_pred CCCHHHHHHHcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEE
Confidence 11111111110000 000001122222221111 124677799999998877778888988888665566665
Q ss_pred EEcCc-hhhHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHHHH
Q 001995 330 VTTRN-EKVAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVKTL 401 (985)
Q Consensus 330 vTtR~-~~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~ 401 (985)
++|.+ ..+...+.. ....+++.+++.++....+.+.....+.. ........|++.++|.+-.+..+
T Consensus 154 L~Tt~~~kLl~TI~S-RC~~~~f~~Ls~~ei~~~L~~il~~e~i~-----~e~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 154 LATTDPQKLPVTILS-RCLQFHLKALDVEQIRQQLEHILQAEQIP-----FEPRALQLLARAADGSMRDALSL 220 (647)
T ss_pred EecCCccccchHHHh-hheEeeCCCCCHHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 55554 433322111 12689999999999999888765322211 12345678999999988644433
No 68
>PRK04195 replication factor C large subunit; Provisional
Probab=98.32 E-value=3.4e-05 Score=89.45 Aligned_cols=186 Identities=13% Similarity=0.200 Sum_probs=110.7
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 258 (985)
+++|.++.++++.+|+..... +...+.+.|+|++|+||||+|+.++++ . .|+ .+-++++...
T Consensus 15 dlvg~~~~~~~l~~~l~~~~~-------------g~~~~~lLL~GppG~GKTtla~ala~e--l--~~~-~ielnasd~r 76 (482)
T PRK04195 15 DVVGNEKAKEQLREWIESWLK-------------GKPKKALLLYGPPGVGKTSLAHALAND--Y--GWE-VIELNASDQR 76 (482)
T ss_pred HhcCCHHHHHHHHHHHHHHhc-------------CCCCCeEEEECCCCCCHHHHHHHHHHH--c--CCC-EEEEcccccc
Confidence 799999999999999974320 123678999999999999999999984 2 122 3334444322
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCCCc----ccHHHHHhhhcCCCCCcEEEEEcCc
Q 001995 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTEEP----QNWEQLLGCLRCGSKESRILVTTRN 334 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----~~~~~l~~~l~~~~~gs~ilvTtR~ 334 (985)
+. .....++....... .....++-+||+|+++.... ..+..+...+... +..||+|+.+
T Consensus 77 ~~-~~i~~~i~~~~~~~--------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~--~~~iIli~n~ 139 (482)
T PRK04195 77 TA-DVIERVAGEAATSG--------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKKA--KQPIILTAND 139 (482)
T ss_pred cH-HHHHHHHHHhhccC--------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHcC--CCCEEEeccC
Confidence 22 22333333221110 00113678999999965322 2355566555532 2346666543
Q ss_pred h-hhHH-hhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHHHHHhhh
Q 001995 335 E-KVAI-AIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVKTLGSLL 405 (985)
Q Consensus 335 ~-~v~~-~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~~~~L 405 (985)
. .... .+.. ....+++.+++.++....+.+.+...+.. .+ .++...|++.++|..-.+......+
T Consensus 140 ~~~~~~k~Lrs-r~~~I~f~~~~~~~i~~~L~~i~~~egi~--i~---~eaL~~Ia~~s~GDlR~ain~Lq~~ 206 (482)
T PRK04195 140 PYDPSLRELRN-ACLMIEFKRLSTRSIVPVLKRICRKEGIE--CD---DEALKEIAERSGGDLRSAINDLQAI 206 (482)
T ss_pred ccccchhhHhc-cceEEEecCCCHHHHHHHHHHHHHHcCCC--CC---HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 2 2211 1111 12578899999999998888776544321 11 3567889999998776554433333
No 69
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.32 E-value=1.2e-05 Score=95.08 Aligned_cols=202 Identities=19% Similarity=0.210 Sum_probs=119.2
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccC---CceEEEEeC
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHF---NEKIWVCVS 255 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f---~~~~wv~~~ 255 (985)
+++|++..+..+.+.+.. +....+.|+|++|+||||+|+.+++.......+ ...-|+.+.
T Consensus 155 ~iiGqs~~~~~l~~~ia~-----------------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~ 217 (615)
T TIGR02903 155 EIVGQERAIKALLAKVAS-----------------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVD 217 (615)
T ss_pred hceeCcHHHHHHHHHHhc-----------------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEe
Confidence 689999999998887752 234579999999999999999998754333332 123455443
Q ss_pred C---CCCHHHHHHH---------------HHHHhcCC------------------CCCCCCHHHHHHHHHHHhcCceEEE
Q 001995 256 E---PFDDIRIAKA---------------ILESLKGS------------------ATNAVESETVLKQLRESIEGKKFFL 299 (985)
Q Consensus 256 ~---~~~~~~~~~~---------------i~~~l~~~------------------~~~~~~~~~~~~~l~~~l~~k~~Ll 299 (985)
. ..+...+... .+...+.. ..+.. ....+..+.+.++++++.+
T Consensus 218 ~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~L-d~~~Q~~Ll~~Le~~~v~~ 296 (615)
T TIGR02903 218 GTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGEL-DPLLQNKLLKVLEDKRVEF 296 (615)
T ss_pred chhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccC-CHHHHHHHHHHHhhCeEEe
Confidence 2 1122222111 11111110 01111 1235677888888899999
Q ss_pred EecCCCCCCcccHHHHHhhhcCCCCCcEEEE--EcCchh-hHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCccc
Q 001995 300 VLDDVWTEEPQNWEQLLGCLRCGSKESRILV--TTRNEK-VAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEE 376 (985)
Q Consensus 300 VlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv--TtR~~~-v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~ 376 (985)
+-|+.|..+...|+.+...+....+...|++ ||++.. +...+.. ....+.+.+++.+|.+.++.+.+..... ..
T Consensus 297 ~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS-R~~~i~~~pls~edi~~Il~~~a~~~~v--~l 373 (615)
T TIGR02903 297 SSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS-RCAEVFFEPLTPEDIALIVLNAAEKINV--HL 373 (615)
T ss_pred ecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh-ceeEEEeCCCCHHHHHHHHHHHHHHcCC--CC
Confidence 9888877666678887766665555555555 566443 1222211 1246788999999999999987643211 11
Q ss_pred chhHHHHHHHHHHhcCCChhHHHHHHhh
Q 001995 377 SENFENIGRQIVSKCKGLPLAVKTLGSL 404 (985)
Q Consensus 377 ~~~~~~~~~~I~~~~~GlPLai~~~~~~ 404 (985)
. .++...|.+.+..-+-|+..++..
T Consensus 374 s---~eal~~L~~ys~~gRraln~L~~~ 398 (615)
T TIGR02903 374 A---AGVEELIARYTIEGRKAVNILADV 398 (615)
T ss_pred C---HHHHHHHHHCCCcHHHHHHHHHHH
Confidence 1 234555555555445555555443
No 70
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.31 E-value=2.2e-05 Score=78.92 Aligned_cols=91 Identities=15% Similarity=0.236 Sum_probs=64.8
Q ss_pred CceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEEEEEcCch-hhHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCC
Q 001995 294 GKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRILVTTRNE-KVAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRL 372 (985)
Q Consensus 294 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~ 372 (985)
+.+-++|+||+.......++.++..+......+.+|++|++. .+...+.. ....+++.+++.++..+.+.+. + .
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~s-r~~~~~~~~~~~~~~~~~l~~~--g--i 169 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRS-RCQVLPFPPLSEEALLQWLIRQ--G--I 169 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHh-hcEEeeCCCCCHHHHHHHHHHc--C--C
Confidence 566789999997766667788888887666666777777643 22222221 1258999999999999888876 1 1
Q ss_pred CcccchhHHHHHHHHHHhcCCChh
Q 001995 373 DIEESENFENIGRQIVSKCKGLPL 396 (985)
Q Consensus 373 ~~~~~~~~~~~~~~I~~~~~GlPL 396 (985)
. .+.+..|++.++|.|.
T Consensus 170 --~-----~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 170 --S-----EEAAELLLALAGGSPG 186 (188)
T ss_pred --C-----HHHHHHHHHHcCCCcc
Confidence 1 2458899999999885
No 71
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.30 E-value=7.6e-06 Score=91.47 Aligned_cols=194 Identities=16% Similarity=0.112 Sum_probs=111.7
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhc-cCCceEEEEeCCC
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRN-HFNEKIWVCVSEP 257 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-~f~~~~wv~~~~~ 257 (985)
+++|-+..+..|..++..+. -...+.++|+.|+||||+|+.+++. +.. .... ...+...
T Consensus 19 dvVGQe~iv~~L~~~i~~~r----------------i~ha~Lf~GP~GtGKTTlAriLAk~--Lnce~~~~--~~pCg~C 78 (484)
T PRK14956 19 DVIHQDLAIGALQNALKSGK----------------IGHAYIFFGPRGVGKTTIARILAKR--LNCENPIG--NEPCNEC 78 (484)
T ss_pred HHhChHHHHHHHHHHHHcCC----------------CCeEEEEECCCCCCHHHHHHHHHHh--cCcccccC--ccccCCC
Confidence 78999999999999887332 2346899999999999999999873 211 1000 0001111
Q ss_pred CCHHHHHHHHHHHhcC-CCCCCCCHHH---HHHHHHHH-hcCceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEEE-EE
Q 001995 258 FDDIRIAKAILESLKG-SATNAVESET---VLKQLRES-IEGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRIL-VT 331 (985)
Q Consensus 258 ~~~~~~~~~i~~~l~~-~~~~~~~~~~---~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~il-vT 331 (985)
.+-..+...+...+.. ........+. +.+.+... ..++.-++|+|+++......++.++..+........+| .|
T Consensus 79 ~sC~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaT 158 (484)
T PRK14956 79 TSCLEITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILAT 158 (484)
T ss_pred cHHHHHHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeec
Confidence 1111111111000000 0001111222 22222211 23566799999998877778888888886554455554 45
Q ss_pred cCchhhHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHH
Q 001995 332 TRNEKVAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAV 398 (985)
Q Consensus 332 tR~~~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai 398 (985)
|....+...+... ...|.+.+++.++..+.+.+.+...+.. -..+....|++.++|.+--.
T Consensus 159 te~~kI~~TI~SR-Cq~~~f~~ls~~~i~~~L~~i~~~Egi~-----~e~eAL~~Ia~~S~Gd~RdA 219 (484)
T PRK14956 159 TEFHKIPETILSR-CQDFIFKKVPLSVLQDYSEKLCKIENVQ-----YDQEGLFWIAKKGDGSVRDM 219 (484)
T ss_pred CChhhccHHHHhh-hheeeecCCCHHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHcCChHHHH
Confidence 5444443322211 1579999999999998888765433221 12356788999999988543
No 72
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.30 E-value=1.9e-05 Score=89.44 Aligned_cols=181 Identities=17% Similarity=0.204 Sum_probs=113.4
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcch------------------
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDN------------------ 240 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~------------------ 240 (985)
++||-+...+.+.+.+..+. -...+.++|+.|+||||+|+.++..-
T Consensus 14 dliGQe~vv~~L~~a~~~~r----------------i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~ 77 (491)
T PRK14964 14 DLVGQDVLVRILRNAFTLNK----------------IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCI 77 (491)
T ss_pred HhcCcHHHHHHHHHHHHcCC----------------CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHH
Confidence 78999999998888887332 23578999999999999999987510
Q ss_pred hh-hccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCCCcccHHHHHhhh
Q 001995 241 EV-RNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTEEPQNWEQLLGCL 319 (985)
Q Consensus 241 ~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l 319 (985)
.+ .+.+..++.++.+....... .+.+++..... -..++.-++|+|++........+.++..+
T Consensus 78 ~i~~~~~~Dv~eidaas~~~vdd-IR~Iie~~~~~----------------P~~~~~KVvIIDEah~Ls~~A~NaLLK~L 140 (491)
T PRK14964 78 SIKNSNHPDVIEIDAASNTSVDD-IKVILENSCYL----------------PISSKFKVYIIDEVHMLSNSAFNALLKTL 140 (491)
T ss_pred HHhccCCCCEEEEecccCCCHHH-HHHHHHHHHhc----------------cccCCceEEEEeChHhCCHHHHHHHHHHH
Confidence 00 01222334444433222222 12222221100 01245668999999776666788888888
Q ss_pred cCCCCCcEEEEEcC-chhhHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHH
Q 001995 320 RCGSKESRILVTTR-NEKVAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAV 398 (985)
Q Consensus 320 ~~~~~gs~ilvTtR-~~~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai 398 (985)
......+++|++|. ...+...+... ...+++.+++.++....+.+.+...+.. -..+....|++.++|.+-.+
T Consensus 141 EePp~~v~fIlatte~~Kl~~tI~SR-c~~~~f~~l~~~el~~~L~~ia~~Egi~-----i~~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 141 EEPAPHVKFILATTEVKKIPVTIISR-CQRFDLQKIPTDKLVEHLVDIAKKENIE-----HDEESLKLIAENSSGSMRNA 214 (491)
T ss_pred hCCCCCeEEEEEeCChHHHHHHHHHh-heeeecccccHHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHcCCCHHHH
Confidence 87666777666654 33443322211 2678999999999999888876543321 12345778999999877543
No 73
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.30 E-value=1.9e-05 Score=87.73 Aligned_cols=184 Identities=12% Similarity=0.118 Sum_probs=110.0
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhh---------------
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVR--------------- 243 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~--------------- 243 (985)
+++|-+..++.|..++..+....+ ..+..-..-+.++|+.|+|||++|+.++..-.-.
T Consensus 6 ~IiGq~~~~~~L~~~i~~~~~~~~-------~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~ 78 (394)
T PRK07940 6 DLVGQEAVVAELRAAARAARADVA-------AAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRT 78 (394)
T ss_pred hccChHHHHHHHHHHHHhcccccc-------ccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHH
Confidence 688999999999999975431000 0001134678899999999999999987621000
Q ss_pred ---ccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh-----cCceEEEEecCCCCCCcccHHHH
Q 001995 244 ---NHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESI-----EGKKFFLVLDDVWTEEPQNWEQL 315 (985)
Q Consensus 244 ---~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l 315 (985)
+.++...++.... .....+++.. +.+.. .+++-++|+|+++.......+.+
T Consensus 79 ~~~~~hpD~~~i~~~~--------------------~~i~i~~iR~-l~~~~~~~p~~~~~kViiIDead~m~~~aanaL 137 (394)
T PRK07940 79 VLAGTHPDVRVVAPEG--------------------LSIGVDEVRE-LVTIAARRPSTGRWRIVVIEDADRLTERAANAL 137 (394)
T ss_pred HhcCCCCCEEEecccc--------------------ccCCHHHHHH-HHHHHHhCcccCCcEEEEEechhhcCHHHHHHH
Confidence 0111112221110 1112222222 22222 24556888899987776677778
Q ss_pred HhhhcCCCCCcEEEEEcCch-hhHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCC
Q 001995 316 LGCLRCGSKESRILVTTRNE-KVAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGL 394 (985)
Q Consensus 316 ~~~l~~~~~gs~ilvTtR~~-~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~I~~~~~Gl 394 (985)
+..+.....+..+|++|.+. .+...+.. ....+.+.+++.++..+.+.+... . . .+.+..+++.++|.
T Consensus 138 Lk~LEep~~~~~fIL~a~~~~~llpTIrS-Rc~~i~f~~~~~~~i~~~L~~~~~---~--~-----~~~a~~la~~s~G~ 206 (394)
T PRK07940 138 LKAVEEPPPRTVWLLCAPSPEDVLPTIRS-RCRHVALRTPSVEAVAEVLVRRDG---V--D-----PETARRAARASQGH 206 (394)
T ss_pred HHHhhcCCCCCeEEEEECChHHChHHHHh-hCeEEECCCCCHHHHHHHHHHhcC---C--C-----HHHHHHHHHHcCCC
Confidence 88887666666666666553 33322221 126899999999999988875321 0 1 23477889999999
Q ss_pred hhHHHHH
Q 001995 395 PLAVKTL 401 (985)
Q Consensus 395 PLai~~~ 401 (985)
|.....+
T Consensus 207 ~~~A~~l 213 (394)
T PRK07940 207 IGRARRL 213 (394)
T ss_pred HHHHHHH
Confidence 9755433
No 74
>PRK08727 hypothetical protein; Validated
Probab=98.29 E-value=2e-05 Score=81.84 Aligned_cols=148 Identities=16% Similarity=0.141 Sum_probs=89.2
Q ss_pred EEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCce
Q 001995 217 TIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKK 296 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 296 (985)
..+.|+|..|+|||+|++.+++. .......++|+++.+ ....+. ..+. .+ .+.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~--~~~~~~~~~y~~~~~------~~~~~~-----------------~~~~-~l-~~~ 94 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAA--AEQAGRSSAYLPLQA------AAGRLR-----------------DALE-AL-EGR 94 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEeHHH------hhhhHH-----------------HHHH-HH-hcC
Confidence 46999999999999999999884 333334566776432 111111 1111 11 233
Q ss_pred EEEEecCCCCCC-cccHHH-HHhhhcC-CCCCcEEEEEcCchh---------hHHhhcCcccccccCCCCChHHHHHHHH
Q 001995 297 FFLVLDDVWTEE-PQNWEQ-LLGCLRC-GSKESRILVTTRNEK---------VAIAIGTTKFNIIPIELLSDEDCWSIFS 364 (985)
Q Consensus 297 ~LlVlDdv~~~~-~~~~~~-l~~~l~~-~~~gs~ilvTtR~~~---------v~~~~~~~~~~~~~l~~L~~~e~~~Lf~ 364 (985)
-+||+||+.... ...|.. +...+.. ...|..||+|++... +...+... ..+++++++.++-.+++.
T Consensus 95 dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~--~~~~l~~~~~e~~~~iL~ 172 (233)
T PRK08727 95 SLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQC--IRIGLPVLDDVARAAVLR 172 (233)
T ss_pred CEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcC--ceEEecCCCHHHHHHHHH
Confidence 589999996432 123433 3332221 124567999998532 22222223 578999999999999999
Q ss_pred HHhcCCCCCcccchhHHHHHHHHHHhcCCChhHH
Q 001995 365 QLALSRRLDIEESENFENIGRQIVSKCKGLPLAV 398 (985)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai 398 (985)
+++...+.. -.++...-|++.++|-.-.+
T Consensus 173 ~~a~~~~l~-----l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 173 ERAQRRGLA-----LDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHHHcCCC-----CCHHHHHHHHHhCCCCHHHH
Confidence 877543321 12355677888888766554
No 75
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.27 E-value=1.7e-05 Score=92.43 Aligned_cols=197 Identities=15% Similarity=0.207 Sum_probs=111.9
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccC--CceEEEEeCC
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHF--NEKIWVCVSE 256 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~ 256 (985)
++||-+..++.|.+++..+. -...+.++|..|+||||+|+.+++.-.-.+.. ..... .
T Consensus 17 dviGQe~vv~~L~~~l~~~r----------------l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~ 76 (618)
T PRK14951 17 EMVGQEHVVQALTNALTQQR----------------LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----T 76 (618)
T ss_pred HhcCcHHHHHHHHHHHHcCC----------------CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----C
Confidence 78999888899999887433 34678999999999999999986521000000 00000 0
Q ss_pred CCCHHHHHHHHHHHh-----cCCCCCCCCHHHHHHHHHHH----hcCceEEEEecCCCCCCcccHHHHHhhhcCCCCCcE
Q 001995 257 PFDDIRIAKAILESL-----KGSATNAVESETVLKQLRES----IEGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESR 327 (985)
Q Consensus 257 ~~~~~~~~~~i~~~l-----~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 327 (985)
.++.-...+.|...- ..+.......+++.+.+... ..++.-++|||+++......++.++..+.......+
T Consensus 77 pCg~C~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~ 156 (618)
T PRK14951 77 PCGVCQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLK 156 (618)
T ss_pred CCCccHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeE
Confidence 011111111110000 00000111222322222111 124556899999988777788888888876655666
Q ss_pred EEEEc-CchhhHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHHHH
Q 001995 328 ILVTT-RNEKVAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVKTL 401 (985)
Q Consensus 328 ilvTt-R~~~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~ 401 (985)
+|++| ....+...+.. ....+++.+++.++....+.+.+...+.. ...+....|++.++|.+--+..+
T Consensus 157 fIL~Ttd~~kil~TIlS-Rc~~~~f~~Ls~eei~~~L~~i~~~egi~-----ie~~AL~~La~~s~GslR~al~l 225 (618)
T PRK14951 157 FVLATTDPQKVPVTVLS-RCLQFNLRPMAPETVLEHLTQVLAAENVP-----AEPQALRLLARAARGSMRDALSL 225 (618)
T ss_pred EEEEECCchhhhHHHHH-hceeeecCCCCHHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 66555 43333322111 12689999999999999888766443321 11345778889999877544433
No 76
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.27 E-value=1.7e-05 Score=91.35 Aligned_cols=183 Identities=13% Similarity=0.171 Sum_probs=111.0
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhh----------------
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEV---------------- 242 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~---------------- 242 (985)
++||-+..++.|.+++..+. -...+.++|+.|+||||+|+.++..-.-
T Consensus 17 divGq~~v~~~L~~~~~~~~----------------l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~ 80 (509)
T PRK14958 17 EVIGQAPVVRALSNALDQQY----------------LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCR 80 (509)
T ss_pred HhcCCHHHHHHHHHHHHhCC----------------CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHH
Confidence 78999999999999997433 3356789999999999999998863110
Q ss_pred ---hccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCCCcccHHHHHhhh
Q 001995 243 ---RNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTEEPQNWEQLLGCL 319 (985)
Q Consensus 243 ---~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l 319 (985)
.+.|..++.+..+....+..+ +++++.+... -..++.-++|+|+++.......+.++..+
T Consensus 81 ~i~~g~~~d~~eidaas~~~v~~i-R~l~~~~~~~----------------p~~~~~kV~iIDE~~~ls~~a~naLLk~L 143 (509)
T PRK14958 81 EIDEGRFPDLFEVDAASRTKVEDT-RELLDNIPYA----------------PTKGRFKVYLIDEVHMLSGHSFNALLKTL 143 (509)
T ss_pred HHhcCCCceEEEEcccccCCHHHH-HHHHHHHhhc----------------cccCCcEEEEEEChHhcCHHHHHHHHHHH
Confidence 011222333332222222211 1222211110 11356678999999877777788888888
Q ss_pred cCCCCCcEEEEEcCc-hhhHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHH
Q 001995 320 RCGSKESRILVTTRN-EKVAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAV 398 (985)
Q Consensus 320 ~~~~~gs~ilvTtR~-~~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai 398 (985)
......+++|++|.+ ..+...+.. ....+++.+++.++....+.+.+-..+.. -..+....|++.++|.+--+
T Consensus 144 Eepp~~~~fIlattd~~kl~~tI~S-Rc~~~~f~~l~~~~i~~~l~~il~~egi~-----~~~~al~~ia~~s~GslR~a 217 (509)
T PRK14958 144 EEPPSHVKFILATTDHHKLPVTVLS-RCLQFHLAQLPPLQIAAHCQHLLKEENVE-----FENAALDLLARAANGSVRDA 217 (509)
T ss_pred hccCCCeEEEEEECChHhchHHHHH-HhhhhhcCCCCHHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHcCCcHHHH
Confidence 766666776665543 333222111 11578899999999887766655433221 11234677888999887544
Q ss_pred HH
Q 001995 399 KT 400 (985)
Q Consensus 399 ~~ 400 (985)
..
T Consensus 218 l~ 219 (509)
T PRK14958 218 LS 219 (509)
T ss_pred HH
Confidence 33
No 77
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.27 E-value=2e-05 Score=90.66 Aligned_cols=196 Identities=14% Similarity=0.186 Sum_probs=110.7
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 258 (985)
+++|++..++.+.+++..+. -...+.++|+.|+||||+|+.+++. .. |.-|... ...
T Consensus 17 dIIGQe~iv~~L~~aI~~~r----------------l~hA~Lf~GP~GvGKTTlA~~lAk~--L~----C~~~~~~-~~C 73 (605)
T PRK05896 17 QIIGQELIKKILVNAILNNK----------------LTHAYIFSGPRGIGKTSIAKIFAKA--IN----CLNPKDG-DCC 73 (605)
T ss_pred HhcCcHHHHHHHHHHHHcCC----------------CCceEEEECCCCCCHHHHHHHHHHH--hc----CCCCCCC-CCC
Confidence 78999999999999887433 3357889999999999999999873 11 1112110 011
Q ss_pred CHHHHHHHHHHHhcC-----CCCCCCCHHHHHHHH---HHH-hcCceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEEE
Q 001995 259 DDIRIAKAILESLKG-----SATNAVESETVLKQL---RES-IEGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRIL 329 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~-----~~~~~~~~~~~~~~l---~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~il 329 (985)
..-...+.+...... ........+++...+ ... ..+++-++|+|+++......++.++..+........+|
T Consensus 74 g~C~sCr~i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfI 153 (605)
T PRK05896 74 NSCSVCESINTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFI 153 (605)
T ss_pred cccHHHHHHHcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEE
Confidence 111111111111000 000011222222111 110 12344469999997766667888888887655556665
Q ss_pred EEc-CchhhHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChh-HHHHHHh
Q 001995 330 VTT-RNEKVAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPL-AVKTLGS 403 (985)
Q Consensus 330 vTt-R~~~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPL-ai~~~~~ 403 (985)
++| ....+...+.. ....+++.+++.++....+...+...+.. . ..+.+..+++.++|.+- |+..+-.
T Consensus 154 L~Tt~~~KLl~TI~S-Rcq~ieF~~Ls~~eL~~~L~~il~kegi~--I---s~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 154 FATTEFQKIPLTIIS-RCQRYNFKKLNNSELQELLKSIAKKEKIK--I---EDNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred EECCChHhhhHHHHh-hhhhcccCCCCHHHHHHHHHHHHHHcCCC--C---CHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 555 43333322211 12588999999999998888765433211 1 13457788999999664 4444433
No 78
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.27 E-value=7.4e-07 Score=101.58 Aligned_cols=105 Identities=35% Similarity=0.435 Sum_probs=84.5
Q ss_pred hccCCcceeecCC--CCCCCCcccccCC-CCCeEecCCCCCccccchhhcCCCCCcEeeccCcccccccchhhhhccccc
Q 001995 600 FDRLTCLRSIDGL--PVGQIPKGIKKLI-HLRYLALGENPWIKELPEALCELCNLQTLDVSLCHYLKRLPERIGQLINLR 676 (985)
Q Consensus 600 ~~~l~~Lr~L~l~--~~~~lp~~i~~l~-~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~ 676 (985)
+..++.+..|++. .+..+|..++.+. +|++|+++++. +..+|..+..+++|+.|++++|. +..+|...+.+++|+
T Consensus 112 ~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L~ 189 (394)
T COG4886 112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNLN 189 (394)
T ss_pred hhcccceeEEecCCcccccCccccccchhhcccccccccc-hhhhhhhhhccccccccccCCch-hhhhhhhhhhhhhhh
Confidence 3445778888887 7888888888885 99999999998 99998788999999999999998 888988777899999
Q ss_pred eeecccccccccccCCCcCCCCCCCCccCceEe
Q 001995 677 HLMNSKEEWSRLSYMPRGMERLTGLRTLGAFVA 709 (985)
Q Consensus 677 ~L~l~~~~~~~l~~lp~~i~~l~~L~~L~~~~~ 709 (985)
.|++++|. +..+|..++.+..|++|.+..+
T Consensus 190 ~L~ls~N~---i~~l~~~~~~~~~L~~l~~~~N 219 (394)
T COG4886 190 NLDLSGNK---ISDLPPEIELLSALEELDLSNN 219 (394)
T ss_pred heeccCCc---cccCchhhhhhhhhhhhhhcCC
Confidence 99998654 4667776666667777776544
No 79
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.26 E-value=1.4e-06 Score=90.41 Aligned_cols=90 Identities=19% Similarity=0.174 Sum_probs=62.4
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCC--CCHHHHHHHHHHHhcCCCCCCCCHH------HHHH
Q 001995 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEP--FDDIRIAKAILESLKGSATNAVESE------TVLK 286 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~------~~~~ 286 (985)
.-..++|+|++|+|||||++.++++.... +|+.++|+.+... +++.++++.+...+-....+..... .+..
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 45689999999999999999999964433 8999999997666 7899999998443322222221111 1222
Q ss_pred HHHHH-hcCceEEEEecCCC
Q 001995 287 QLRES-IEGKKFFLVLDDVW 305 (985)
Q Consensus 287 ~l~~~-l~~k~~LlVlDdv~ 305 (985)
..... -.++++++++|++.
T Consensus 94 ~a~~~~~~G~~vll~iDei~ 113 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSIT 113 (249)
T ss_pred HHHHHHHCCCCEEEEEECHH
Confidence 22222 25899999999994
No 80
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.23 E-value=4.7e-05 Score=88.47 Aligned_cols=180 Identities=16% Similarity=0.228 Sum_probs=109.9
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhh---------------
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVR--------------- 243 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~--------------- 243 (985)
+++|-+..++.+..++..+. -...+.++|+.|+||||+|+.++..-.-.
T Consensus 17 divGq~~v~~~L~~~i~~~~----------------~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~ 80 (527)
T PRK14969 17 ELVGQEHVVRALTNALEQQR----------------LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACL 80 (527)
T ss_pred HhcCcHHHHHHHHHHHHcCC----------------CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHH
Confidence 78999999999999987432 23567899999999999999997631100
Q ss_pred ----ccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH----hcCceEEEEecCCCCCCcccHHHH
Q 001995 244 ----NHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRES----IEGKKFFLVLDDVWTEEPQNWEQL 315 (985)
Q Consensus 244 ----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l 315 (985)
+.|...+++..+.. ...+++...+... ..+++-++|+|+++.......+.+
T Consensus 81 ~i~~~~~~d~~ei~~~~~---------------------~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naL 139 (527)
T PRK14969 81 EIDSGRFVDLIEVDAASN---------------------TQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAM 139 (527)
T ss_pred HHhcCCCCceeEeecccc---------------------CCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHH
Confidence 11122222222111 1122222111111 135677999999987666667788
Q ss_pred HhhhcCCCCCcEEEEEcCc-hhhHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCC
Q 001995 316 LGCLRCGSKESRILVTTRN-EKVAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGL 394 (985)
Q Consensus 316 ~~~l~~~~~gs~ilvTtR~-~~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~I~~~~~Gl 394 (985)
+..+......+.+|++|.+ ..+...+.. ....+++.+++.++....+.+.+...+.. ........|++.++|.
T Consensus 140 LK~LEepp~~~~fIL~t~d~~kil~tI~S-Rc~~~~f~~l~~~~i~~~L~~il~~egi~-----~~~~al~~la~~s~Gs 213 (527)
T PRK14969 140 LKTLEEPPEHVKFILATTDPQKIPVTVLS-RCLQFNLKQMPPPLIVSHLQHILEQENIP-----FDATALQLLARAAAGS 213 (527)
T ss_pred HHHHhCCCCCEEEEEEeCChhhCchhHHH-HHHHHhcCCCCHHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHcCCC
Confidence 8888766566666665543 322211110 12578999999999998887765432211 1234567889999997
Q ss_pred hh-HHHHH
Q 001995 395 PL-AVKTL 401 (985)
Q Consensus 395 PL-ai~~~ 401 (985)
+- |+..+
T Consensus 214 lr~al~ll 221 (527)
T PRK14969 214 MRDALSLL 221 (527)
T ss_pred HHHHHHHH
Confidence 75 44443
No 81
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.23 E-value=6.2e-07 Score=87.15 Aligned_cols=79 Identities=30% Similarity=0.353 Sum_probs=21.1
Q ss_pred CCcceeecCC--CCCCCCcccccCCCCCeEecCCCCCccccchhh-cCCCCCcEeeccCcccccccc--hhhhhccccce
Q 001995 603 LTCLRSIDGL--PVGQIPKGIKKLIHLRYLALGENPWIKELPEAL-CELCNLQTLDVSLCHYLKRLP--ERIGQLINLRH 677 (985)
Q Consensus 603 l~~Lr~L~l~--~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp~~i-~~L~~L~~L~l~~~~~l~~lp--~~i~~L~~L~~ 677 (985)
+..|++|+++ .+..++ .+..+++|+.|++++|. |+.+++.+ ..+++|+.|++++|+ +..+- ..+..+++|++
T Consensus 41 l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~-I~~i~~~l~~~lp~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~ 117 (175)
T PF14580_consen 41 LDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNR-ISSISEGLDKNLPNLQELYLSNNK-ISDLNELEPLSSLPKLRV 117 (175)
T ss_dssp -TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--E
T ss_pred hcCCCEEECCCCCCcccc-CccChhhhhhcccCCCC-CCccccchHHhCCcCCEEECcCCc-CCChHHhHHHHcCCCcce
Confidence 3444444444 333332 34445555555555555 55554333 235555555555554 33222 23344555555
Q ss_pred eeccccc
Q 001995 678 LMNSKEE 684 (985)
Q Consensus 678 L~l~~~~ 684 (985)
|++.+|.
T Consensus 118 L~L~~NP 124 (175)
T PF14580_consen 118 LSLEGNP 124 (175)
T ss_dssp EE-TT-G
T ss_pred eeccCCc
Confidence 5555443
No 82
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.22 E-value=4.8e-05 Score=85.35 Aligned_cols=184 Identities=15% Similarity=0.182 Sum_probs=110.3
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhh--hc------------
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEV--RN------------ 244 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~--~~------------ 244 (985)
+++|.+..++.+..++..+. -...+.++|+.|+||||+|+.++..-.- ..
T Consensus 15 ~iig~~~~~~~l~~~~~~~~----------------~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~ 78 (355)
T TIGR02397 15 DVIGQEHIVQTLKNAIKNGR----------------IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCK 78 (355)
T ss_pred hccCcHHHHHHHHHHHHcCC----------------CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHH
Confidence 68999999999999887432 3457889999999999999988763110 00
Q ss_pred ------cCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCCCcccHHHHHhh
Q 001995 245 ------HFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTEEPQNWEQLLGC 318 (985)
Q Consensus 245 ------~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~ 318 (985)
+++ .+++........ ...+++...+... -..+++-++|+|++........+.+...
T Consensus 79 ~~~~~~~~~-~~~~~~~~~~~~-~~~~~l~~~~~~~----------------p~~~~~~vviidea~~l~~~~~~~Ll~~ 140 (355)
T TIGR02397 79 EINSGSSLD-VIEIDAASNNGV-DDIREILDNVKYA----------------PSSGKYKVYIIDEVHMLSKSAFNALLKT 140 (355)
T ss_pred HHhcCCCCC-EEEeeccccCCH-HHHHHHHHHHhcC----------------cccCCceEEEEeChhhcCHHHHHHHHHH
Confidence 111 122221111111 1111222211100 0124556899999966555567777777
Q ss_pred hcCCCCCcEEEEEcCchh-hHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhH
Q 001995 319 LRCGSKESRILVTTRNEK-VAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLA 397 (985)
Q Consensus 319 l~~~~~gs~ilvTtR~~~-v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLa 397 (985)
+......+.+|++|.+.. +...+... ...+++.+++.++....+...+-..+.. . ..+.+..+++.++|.|..
T Consensus 141 le~~~~~~~lIl~~~~~~~l~~~l~sr-~~~~~~~~~~~~~l~~~l~~~~~~~g~~--i---~~~a~~~l~~~~~g~~~~ 214 (355)
T TIGR02397 141 LEEPPEHVVFILATTEPHKIPATILSR-CQRFDFKRIPLEDIVERLKKILDKEGIK--I---EDEALELIARAADGSLRD 214 (355)
T ss_pred HhCCccceeEEEEeCCHHHHHHHHHhh-eeEEEcCCCCHHHHHHHHHHHHHHcCCC--C---CHHHHHHHHHHcCCChHH
Confidence 765555667666665443 22222111 2578889999999988888766433221 1 135678889999998876
Q ss_pred HHHHH
Q 001995 398 VKTLG 402 (985)
Q Consensus 398 i~~~~ 402 (985)
+....
T Consensus 215 a~~~l 219 (355)
T TIGR02397 215 ALSLL 219 (355)
T ss_pred HHHHH
Confidence 54443
No 83
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.21 E-value=3.6e-05 Score=87.71 Aligned_cols=188 Identities=22% Similarity=0.264 Sum_probs=108.4
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhc--------------
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRN-------------- 244 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-------------- 244 (985)
+++|.+...+.|...+..+. -...+.++|++|+||||+|+.+++.-.-..
T Consensus 15 divGq~~i~~~L~~~i~~~~----------------l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~ 78 (472)
T PRK14962 15 EVVGQDHVKKLIINALKKNS----------------ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACR 78 (472)
T ss_pred HccCcHHHHHHHHHHHHcCC----------------CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHH
Confidence 78999988888888776332 235689999999999999999987311100
Q ss_pred -----cCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCCCcccHHHHHhhh
Q 001995 245 -----HFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTEEPQNWEQLLGCL 319 (985)
Q Consensus 245 -----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l 319 (985)
.+..++.++.+.......+ +.+...... .-..+++-++|+|+++.......+.++..+
T Consensus 79 ~i~~g~~~dv~el~aa~~~gid~i-R~i~~~~~~----------------~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~L 141 (472)
T PRK14962 79 SIDEGTFMDVIELDAASNRGIDEI-RKIRDAVGY----------------RPMEGKYKVYIIDEVHMLTKEAFNALLKTL 141 (472)
T ss_pred HHhcCCCCccEEEeCcccCCHHHH-HHHHHHHhh----------------ChhcCCeEEEEEEChHHhHHHHHHHHHHHH
Confidence 0111222222211111111 111111100 012356779999999665445566677777
Q ss_pred cCCCCCcEEEEEcCc-hhhHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCC-ChhH
Q 001995 320 RCGSKESRILVTTRN-EKVAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKG-LPLA 397 (985)
Q Consensus 320 ~~~~~gs~ilvTtR~-~~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~I~~~~~G-lPLa 397 (985)
........+|++|.+ ..+...+... ...+++.+++.++....+.+.+...+.. -..+....|++.++| ++.|
T Consensus 142 E~p~~~vv~Ilattn~~kl~~~L~SR-~~vv~f~~l~~~el~~~L~~i~~~egi~-----i~~eal~~Ia~~s~GdlR~a 215 (472)
T PRK14962 142 EEPPSHVVFVLATTNLEKVPPTIISR-CQVIEFRNISDELIIKRLQEVAEAEGIE-----IDREALSFIAKRASGGLRDA 215 (472)
T ss_pred HhCCCcEEEEEEeCChHhhhHHHhcC-cEEEEECCccHHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHhCCCHHHH
Confidence 654444554444433 3343333222 2678999999999988888876433221 113456778887764 5666
Q ss_pred HHHHHhhh
Q 001995 398 VKTLGSLL 405 (985)
Q Consensus 398 i~~~~~~L 405 (985)
+..+-.+.
T Consensus 216 ln~Le~l~ 223 (472)
T PRK14962 216 LTMLEQVW 223 (472)
T ss_pred HHHHHHHH
Confidence 66665543
No 84
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.21 E-value=2.8e-05 Score=80.93 Aligned_cols=153 Identities=16% Similarity=0.194 Sum_probs=89.6
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcC
Q 001995 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEG 294 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 294 (985)
....+.|+|..|+|||+||+.+++... ... ...++++...... . + .. ..
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~-~~~-~~~~~i~~~~~~~------~----~------------------~~-~~ 89 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADAS-YGG-RNARYLDAASPLL------A----F------------------DF-DP 89 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH-hCC-CcEEEEehHHhHH------H----H------------------hh-cc
Confidence 345789999999999999999998421 112 2345555433110 0 0 01 12
Q ss_pred ceEEEEecCCCCCCcccHHHHHhhhcCC-CCCc-EEEEEcCchhhHH--------hhcCcccccccCCCCChHHHHHHHH
Q 001995 295 KKFFLVLDDVWTEEPQNWEQLLGCLRCG-SKES-RILVTTRNEKVAI--------AIGTTKFNIIPIELLSDEDCWSIFS 364 (985)
Q Consensus 295 k~~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs-~ilvTtR~~~v~~--------~~~~~~~~~~~l~~L~~~e~~~Lf~ 364 (985)
..-+||+||+...+...-..+...+... ..+. .||+|++...... .+... ..+++.++++++-..++.
T Consensus 90 ~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~--~~i~l~pl~~~~~~~~l~ 167 (227)
T PRK08903 90 EAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWG--LVYELKPLSDADKIAALK 167 (227)
T ss_pred cCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcC--eEEEecCCCHHHHHHHHH
Confidence 3447899999654333333454444321 2333 4667766433211 22212 578999999988777776
Q ss_pred HHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHHHHHhhh
Q 001995 365 QLALSRRLDIEESENFENIGRQIVSKCKGLPLAVKTLGSLL 405 (985)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~~~~L 405 (985)
+.+...+.. -.++....+++.+.|.+..+..+...+
T Consensus 168 ~~~~~~~v~-----l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 168 AAAAERGLQ-----LADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHHHcCCC-----CCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 644322211 123567778888999999887776665
No 85
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.20 E-value=1.4e-05 Score=95.45 Aligned_cols=173 Identities=21% Similarity=0.299 Sum_probs=97.5
Q ss_pred ceecchhhHH---HHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeC
Q 001995 179 EIRGRNHLQN---KVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVS 255 (985)
Q Consensus 179 ~~vGr~~~~~---~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 255 (985)
+|+|.+..+. .+...+. ......+.|+|++|+||||+|+.+++ ....+|. .++..
T Consensus 29 d~vGQe~ii~~~~~L~~~i~-----------------~~~~~slLL~GPpGtGKTTLA~aIA~--~~~~~f~---~lna~ 86 (725)
T PRK13341 29 EFVGQDHILGEGRLLRRAIK-----------------ADRVGSLILYGPPGVGKTTLARIIAN--HTRAHFS---SLNAV 86 (725)
T ss_pred HhcCcHHHhhhhHHHHHHHh-----------------cCCCceEEEECCCCCCHHHHHHHHHH--HhcCcce---eehhh
Confidence 6889888774 4555554 23455678999999999999999997 3444431 11111
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh--cCceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEEEEE--
Q 001995 256 EPFDDIRIAKAILESLKGSATNAVESETVLKQLRESI--EGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRILVT-- 331 (985)
Q Consensus 256 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvT-- 331 (985)
. .... +..+......+.+ .+++.+|||||++......++.++..+. .|+.++|+
T Consensus 87 ~-~~i~------------------dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aT 144 (725)
T PRK13341 87 L-AGVK------------------DLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGAT 144 (725)
T ss_pred h-hhhH------------------HHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEec
Confidence 0 0000 1111112222222 2567899999998766556666665544 35555553
Q ss_pred cCchh--hHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCC--CcccchhHHHHHHHHHHhcCCChh
Q 001995 332 TRNEK--VAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRL--DIEESENFENIGRQIVSKCKGLPL 396 (985)
Q Consensus 332 tR~~~--v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~--~~~~~~~~~~~~~~I~~~~~GlPL 396 (985)
|.+.. +....... ...+.+++++.++...++.+.+..... ......-..+....|++.+.|..-
T Consensus 145 Tenp~~~l~~aL~SR-~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 145 TENPYFEVNKALVSR-SRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred CCChHhhhhhHhhcc-ccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 33321 21211111 257899999999999999876531000 000111123456778888887644
No 86
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.19 E-value=4.7e-05 Score=79.36 Aligned_cols=200 Identities=16% Similarity=0.152 Sum_probs=119.1
Q ss_pred hhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhc----cCCceEEEEeCCCCCH
Q 001995 185 HLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRN----HFNEKIWVCVSEPFDD 260 (985)
Q Consensus 185 ~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~ 260 (985)
+.++++.++|..+. ..+.+.+.|||..|.|||++++++....-... .--.++.|.+...++.
T Consensus 44 ~~L~~L~~Ll~~P~--------------~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~ 109 (302)
T PF05621_consen 44 EALDRLEELLEYPK--------------RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDE 109 (302)
T ss_pred HHHHHHHHHHhCCc--------------ccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCCh
Confidence 44566666666544 46778899999999999999999986421110 0113667788889999
Q ss_pred HHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcC-ceEEEEecCCCCCC------cccHHHHHhhhcCCCCCcEEEEEcC
Q 001995 261 IRIAKAILESLKGSATNAVESETVLKQLRESIEG-KKFFLVLDDVWTEE------PQNWEQLLGCLRCGSKESRILVTTR 333 (985)
Q Consensus 261 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~~~------~~~~~~l~~~l~~~~~gs~ilvTtR 333 (985)
..++..|+.+++...........+.....+.++. +--+||+|.+.+.- ....-.....+.+.-.=+-|.+-|+
T Consensus 110 ~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 110 RRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred HHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 9999999999998765555666655555556643 45588999996521 1222233344433334455666666
Q ss_pred chhhHHhhcC---cccccccCCCCCh-HHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHH
Q 001995 334 NEKVAIAIGT---TKFNIIPIELLSD-EDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAV 398 (985)
Q Consensus 334 ~~~v~~~~~~---~~~~~~~l~~L~~-~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai 398 (985)
...-+-..+. ..+.++.+..-.. +|...|+......-.......-...+++..|...++|+.=-+
T Consensus 190 ~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l 258 (302)
T PF05621_consen 190 EAYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGEL 258 (302)
T ss_pred HHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHH
Confidence 4332211111 0124566666554 344455543221111000112234578999999999986443
No 87
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.18 E-value=4.2e-05 Score=86.31 Aligned_cols=198 Identities=15% Similarity=0.220 Sum_probs=112.1
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEE-eCCC
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVC-VSEP 257 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~-~~~~ 257 (985)
+++|.+..++.|..++..+. -...+.++|+.|+||||+|+.+++.-.-...+....|.. ...+
T Consensus 17 eiiGq~~~~~~L~~~~~~~~----------------~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~ 80 (397)
T PRK14955 17 DITAQEHITRTIQNSLRMGR----------------VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEP 80 (397)
T ss_pred hccChHHHHHHHHHHHHhCC----------------cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCC
Confidence 78999999999988887332 234588999999999999999887311111111111110 0011
Q ss_pred CCHHHHHHHHHHHhcC-----CCCCCCCHHHHHHHHHHHh-----cCceEEEEecCCCCCCcccHHHHHhhhcCCCCCcE
Q 001995 258 FDDIRIAKAILESLKG-----SATNAVESETVLKQLRESI-----EGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESR 327 (985)
Q Consensus 258 ~~~~~~~~~i~~~l~~-----~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 327 (985)
...-..-+.+...... ........+++.+ +.+.+ .+.+-++|+|++.......++.+...+......+.
T Consensus 81 c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~-l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~ 159 (397)
T PRK14955 81 CGECESCRDFDAGTSLNISEFDAASNNSVDDIRL-LRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAI 159 (397)
T ss_pred CCCCHHHHHHhcCCCCCeEeecccccCCHHHHHH-HHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeE
Confidence 1111111111110000 0001111333332 22222 35566899999977666678888888876666666
Q ss_pred EEEEc-CchhhHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHH
Q 001995 328 ILVTT-RNEKVAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVK 399 (985)
Q Consensus 328 ilvTt-R~~~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~ 399 (985)
+|++| +...+...+... ...+++.+++.++....+...+-..+. .-..+.+..|++.++|.+--+.
T Consensus 160 ~Il~t~~~~kl~~tl~sR-~~~v~f~~l~~~ei~~~l~~~~~~~g~-----~i~~~al~~l~~~s~g~lr~a~ 226 (397)
T PRK14955 160 FIFATTELHKIPATIASR-CQRFNFKRIPLEEIQQQLQGICEAEGI-----SVDADALQLIGRKAQGSMRDAQ 226 (397)
T ss_pred EEEEeCChHHhHHHHHHH-HHHhhcCCCCHHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHcCCCHHHHH
Confidence 66555 444443322111 157899999999998888776533221 1123568889999999775443
No 88
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.17 E-value=0.00011 Score=77.59 Aligned_cols=171 Identities=20% Similarity=0.263 Sum_probs=110.1
Q ss_pred cCCceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeC
Q 001995 176 ESYEIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVS 255 (985)
Q Consensus 176 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 255 (985)
++ .|.+|+..+..+..++...+ ..-+..|.|+|..|.|||.+.+.+++.. . ...+|+++-
T Consensus 5 ~~-~v~~Re~qi~~L~~Llg~~~--------------~~~PS~~~iyG~sgTGKT~~~r~~l~~~--n---~~~vw~n~~ 64 (438)
T KOG2543|consen 5 EP-NVPCRESQIRRLKSLLGNNS--------------CTIPSIVHIYGHSGTGKTYLVRQLLRKL--N---LENVWLNCV 64 (438)
T ss_pred cc-CccchHHHHHHHHHHhCCCC--------------cccceeEEEeccCCCchhHHHHHHHhhc--C---CcceeeehH
Confidence 44 78899999999999887544 2345678999999999999999999843 1 136899999
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCCC--H--H---HHHHHHHH--Hhc--CceEEEEecCCCCCC---cccHHHHHhhhcC
Q 001995 256 EPFDDIRIAKAILESLKGSATNAVE--S--E---TVLKQLRE--SIE--GKKFFLVLDDVWTEE---PQNWEQLLGCLRC 321 (985)
Q Consensus 256 ~~~~~~~~~~~i~~~l~~~~~~~~~--~--~---~~~~~l~~--~l~--~k~~LlVlDdv~~~~---~~~~~~l~~~l~~ 321 (985)
+.++.+-++..|+.+....+.+... . + .....+.+ ... ++.++|||||++.-. .--+..+...-.-
T Consensus 65 ecft~~~lle~IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el 144 (438)
T KOG2543|consen 65 ECFTYAILLEKILNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYEL 144 (438)
T ss_pred HhccHHHHHHHHHHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHH
Confidence 9999999999999998522222211 1 2 22333333 112 468999999995321 1111111111111
Q ss_pred CCCCcEEEEEcCchhhHHh---hcCcccccccCCCCChHHHHHHHHHH
Q 001995 322 GSKESRILVTTRNEKVAIA---IGTTKFNIIPIELLSDEDCWSIFSQL 366 (985)
Q Consensus 322 ~~~gs~ilvTtR~~~v~~~---~~~~~~~~~~l~~L~~~e~~~Lf~~~ 366 (985)
.....-+|+++........ +++..+.++.....+.+|..+++.+.
T Consensus 145 ~~~~~i~iils~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 145 LNEPTIVIILSAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred hCCCceEEEEeccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 1222345555554433333 35555567888999999999888663
No 89
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.16 E-value=9e-08 Score=100.89 Aligned_cols=264 Identities=18% Similarity=0.146 Sum_probs=157.8
Q ss_pred CCCeEecCCCCCccc--cchhhcCCCCCcEeeccCcccccccc-hhh-hhccccceeecccccccccccCC--CcCCCCC
Q 001995 626 HLRYLALGENPWIKE--LPEALCELCNLQTLDVSLCHYLKRLP-ERI-GQLINLRHLMNSKEEWSRLSYMP--RGMERLT 699 (985)
Q Consensus 626 ~Lr~L~L~~~~~i~~--lp~~i~~L~~L~~L~l~~~~~l~~lp-~~i-~~L~~L~~L~l~~~~~~~l~~lp--~~i~~l~ 699 (985)
.|+.|+++|+..+.. +-....+++|+++|.+.+|..++.-. ..+ ..+.+|+||++. .|..+.... ......+
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~--~c~~iT~~~Lk~la~gC~ 216 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLH--SCSSITDVSLKYLAEGCR 216 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhc--ccchhHHHHHHHHHHhhh
Confidence 478888999875443 33345689999999999998665322 233 458899999998 666544321 1122344
Q ss_pred CCCccCceEecCCCcccccCCchhhhccccCcceeeecccccccCCCCcchhhhcccccccccccEEEEEcCCCCcchhH
Q 001995 700 GLRTLGAFVASGGKSSKACSSLKSLNKLKHLEGSLTLRGLGNERDLGDDNDDEKVDLKSKMKLVDLHLRFDSTTKTKDHR 779 (985)
Q Consensus 700 ~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 779 (985)
+|..|++....... + ........++..+..+.+++|. ....+
T Consensus 217 kL~~lNlSwc~qi~---~--------------------------------~gv~~~~rG~~~l~~~~~kGC~---e~~le 258 (483)
T KOG4341|consen 217 KLKYLNLSWCPQIS---G--------------------------------NGVQALQRGCKELEKLSLKGCL---ELELE 258 (483)
T ss_pred hHHHhhhccCchhh---c--------------------------------CcchHHhccchhhhhhhhcccc---cccHH
Confidence 55555544322221 0 0011122233333444333322 00111
Q ss_pred hhhcCCCCCCCCCeEEEeeccCCCCCCCChhh--hccccccEEeEeccCCCCcCC--CCC-CCCccceeeccCCCCceEe
Q 001995 780 VVLECLQPPSSLEKLGIYGYAGDTISPTSDWM--LSLAKLRVLTLRFCNECECLP--PLG-KLPCLETLVLEGMSSVKRL 854 (985)
Q Consensus 780 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~--~~l~~L~~L~L~~~~~~~~l~--~l~-~l~~L~~L~L~~~~~l~~l 854 (985)
.+...-.-+.-+.++++..|...+.. .-|. ..+..|+.|+.++|...++.+ .++ +.++|+.|.+.+|..+...
T Consensus 259 ~l~~~~~~~~~i~~lnl~~c~~lTD~--~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~ 336 (483)
T KOG4341|consen 259 ALLKAAAYCLEILKLNLQHCNQLTDE--DLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDR 336 (483)
T ss_pred HHHHHhccChHhhccchhhhccccch--HHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhh
Confidence 11111111223445555566433331 1122 257899999999998766544 343 6899999999999876655
Q ss_pred CCcccCCchhhhhhhhhhhcccccccCCCCCccceeeccccccccccccccccCcccccccccceeecccccCCCC----
Q 001995 855 GNGFLGIAEDHQARADQAETASSIIRDTAFPRLETLEFLDMEKWEEWDDCEIAGGKTIMPRLRHLSICWSPELKAL---- 930 (985)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~lp~L~~L~i~~c~~L~~l---- 930 (985)
+....+ ...+.|+.|.+.+|....+-.... -..++|.|+.|.++.|..++.-
T Consensus 337 ~ft~l~---------------------rn~~~Le~l~~e~~~~~~d~tL~s---ls~~C~~lr~lslshce~itD~gi~~ 392 (483)
T KOG4341|consen 337 GFTMLG---------------------RNCPHLERLDLEECGLITDGTLAS---LSRNCPRLRVLSLSHCELITDEGIRH 392 (483)
T ss_pred hhhhhh---------------------cCChhhhhhcccccceehhhhHhh---hccCCchhccCChhhhhhhhhhhhhh
Confidence 444332 457899999999886554442222 2347999999999999888764
Q ss_pred -CCCCCCCCCcCeEEecCchhhhhhh
Q 001995 931 -PDYILGSTSLDKLLIYYSRHLNNRY 955 (985)
Q Consensus 931 -p~~~~~l~~L~~L~i~~c~~l~~~~ 955 (985)
...-.++..|..+++.+||.+++..
T Consensus 393 l~~~~c~~~~l~~lEL~n~p~i~d~~ 418 (483)
T KOG4341|consen 393 LSSSSCSLEGLEVLELDNCPLITDAT 418 (483)
T ss_pred hhhccccccccceeeecCCCCchHHH
Confidence 3334456779999999999988763
No 90
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=1.1e-07 Score=95.70 Aligned_cols=113 Identities=19% Similarity=0.227 Sum_probs=72.9
Q ss_pred cccccccccEEEEEcCCCCcchhHhhhcCCCCCCCCCeEEEeeccCCCCCCCChhh----hccccccEEeEeccCCCCc-
Q 001995 756 LKSKMKLVDLHLRFDSTTKTKDHRVVLECLQPPSSLEKLGIYGYAGDTISPTSDWM----LSLAKLRVLTLRFCNECEC- 830 (985)
Q Consensus 756 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~----~~l~~L~~L~L~~~~~~~~- 830 (985)
+.+|+.|..|+|+||...... .......+ -++|..|+|+||...-. .+.+ ..+++|..|+|++|..++.
T Consensus 256 ~~scs~L~~LNlsWc~l~~~~-Vtv~V~hi--se~l~~LNlsG~rrnl~---~sh~~tL~~rcp~l~~LDLSD~v~l~~~ 329 (419)
T KOG2120|consen 256 LSSCSRLDELNLSWCFLFTEK-VTVAVAHI--SETLTQLNLSGYRRNLQ---KSHLSTLVRRCPNLVHLDLSDSVMLKND 329 (419)
T ss_pred HHhhhhHhhcCchHhhccchh-hhHHHhhh--chhhhhhhhhhhHhhhh---hhHHHHHHHhCCceeeeccccccccCch
Confidence 455666777777777622111 11111122 25788999999864322 2222 3689999999999977663
Q ss_pred -CCCCCCCCccceeeccCCCCceEeCCcccCCchhhhhhhhhhhcccccccCCCCCccceeeccccc
Q 001995 831 -LPPLGKLPCLETLVLEGMSSVKRLGNGFLGIAEDHQARADQAETASSIIRDTAFPRLETLEFLDME 896 (985)
Q Consensus 831 -l~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~ 896 (985)
+-.+-+++.|++|.++.|..+ +|..+... ...|+|.+|++.+|-
T Consensus 330 ~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l--------------------~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 330 CFQEFFKFNYLQHLSLSRCYDI--IPETLLEL--------------------NSKPSLVYLDVFGCV 374 (419)
T ss_pred HHHHHHhcchheeeehhhhcCC--ChHHeeee--------------------ccCcceEEEEecccc
Confidence 234778999999999999854 33333322 357899999998874
No 91
>PF14516 AAA_35: AAA-like domain
Probab=98.15 E-value=0.00025 Score=77.76 Aligned_cols=201 Identities=14% Similarity=0.126 Sum_probs=119.1
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCC-
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEP- 257 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~- 257 (985)
..|.|...-+++.+.+... ...+.|.|+-.+|||+|...+.+..+. ..| .++++++..-
T Consensus 12 ~Yi~R~~~e~~~~~~i~~~------------------G~~~~I~apRq~GKTSll~~l~~~l~~-~~~-~~v~id~~~~~ 71 (331)
T PF14516_consen 12 FYIERPPAEQECYQEIVQP------------------GSYIRIKAPRQMGKTSLLLRLLERLQQ-QGY-RCVYIDLQQLG 71 (331)
T ss_pred cccCchHHHHHHHHHHhcC------------------CCEEEEECcccCCHHHHHHHHHHHHHH-CCC-EEEEEEeecCC
Confidence 5778886777788877632 258999999999999999999874322 233 4567776542
Q ss_pred ----CCHHHHHHHHHHHhcCC----CC-------CCCCHHHHHHHHHHHh---cCceEEEEecCCCCCCc--ccHHHHHh
Q 001995 258 ----FDDIRIAKAILESLKGS----AT-------NAVESETVLKQLRESI---EGKKFFLVLDDVWTEEP--QNWEQLLG 317 (985)
Q Consensus 258 ----~~~~~~~~~i~~~l~~~----~~-------~~~~~~~~~~~l~~~l---~~k~~LlVlDdv~~~~~--~~~~~l~~ 317 (985)
.+...+++.++..+... .. ...........+.+++ .+++.+|+||+++..-. ...+++..
T Consensus 72 ~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~ 151 (331)
T PF14516_consen 72 SAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFG 151 (331)
T ss_pred CcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHH
Confidence 24555666665555432 10 0111223333444443 26899999999964221 12233343
Q ss_pred hhc----CCC----CCcEEEEEcCchhh--HHhhcCc---ccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHH
Q 001995 318 CLR----CGS----KESRILVTTRNEKV--AIAIGTT---KFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIG 384 (985)
Q Consensus 318 ~l~----~~~----~gs~ilvTtR~~~v--~~~~~~~---~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~ 384 (985)
.++ ... -.+-.+|....... ....... -...+.|++++.+|...|+..+...- .+ ...
T Consensus 152 ~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~------~~---~~~ 222 (331)
T PF14516_consen 152 LLRSWYEQRKNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEF------SQ---EQL 222 (331)
T ss_pred HHHHHHHhcccCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccC------CH---HHH
Confidence 333 111 11112222222211 1111111 01478899999999999998864321 11 228
Q ss_pred HHHHHhcCCChhHHHHHHhhhhcC
Q 001995 385 RQIVSKCKGLPLAVKTLGSLLRFK 408 (985)
Q Consensus 385 ~~I~~~~~GlPLai~~~~~~L~~~ 408 (985)
++|...+||+|.-+..++..+...
T Consensus 223 ~~l~~~tgGhP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 223 EQLMDWTGGHPYLVQKACYLLVEE 246 (331)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHc
Confidence 889999999999999999999654
No 92
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.14 E-value=4e-05 Score=82.77 Aligned_cols=214 Identities=15% Similarity=0.165 Sum_probs=131.0
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 258 (985)
.++||+.|++.+.+++...-+ ....+.+.|.|-+|.|||.+...++.+..-...=..++++++..--
T Consensus 151 ~l~gRe~e~~~v~~F~~~hle-------------~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~ 217 (529)
T KOG2227|consen 151 TLKGRELEMDIVREFFSLHLE-------------LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLT 217 (529)
T ss_pred CccchHHHHHHHHHHHHhhhh-------------cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeecccc
Confidence 799999999999999985542 3456789999999999999999999853322222345788877767
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcC--ceEEEEecCCCCCCcccHHHHHhhhcCC-CCCcEEEEEcCch
Q 001995 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESIEG--KKFFLVLDDVWTEEPQNWEQLLGCLRCG-SKESRILVTTRNE 335 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~--k~~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs~ilvTtR~~ 335 (985)
...+++..|...+...........+....+.++.++ ..+|+|+|..+.-....-..+...+.+. -.++|+|+----.
T Consensus 218 ~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiAN 297 (529)
T KOG2227|consen 218 EASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIAN 297 (529)
T ss_pred chHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehh
Confidence 788888888888732221222224555666666654 3699999998542222222233333322 3455655432211
Q ss_pred h--hHH----hhc---CcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHHHHHhhh
Q 001995 336 K--VAI----AIG---TTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVKTLGSLL 405 (985)
Q Consensus 336 ~--v~~----~~~---~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~~~~L 405 (985)
. ... .+. .-.+..+..+|.+.++..++|..+..........+...+-.|++++.-.|.+--|+.+.-+.+
T Consensus 298 slDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~ai 376 (529)
T KOG2227|consen 298 SLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAI 376 (529)
T ss_pred hhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 1 110 111 112467889999999999999998765443322233444455555555555555665555444
No 93
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.14 E-value=8.3e-05 Score=77.38 Aligned_cols=156 Identities=17% Similarity=0.172 Sum_probs=92.4
Q ss_pred CEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCc
Q 001995 216 PTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEGK 295 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 295 (985)
...+.|+|+.|+|||+|++.+++. ....-..+.++++..... ...++.+ .+..
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~--~~~~~~~v~y~~~~~~~~--------------------~~~~~~~----~~~~- 97 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAE--LSQRGRAVGYVPLDKRAW--------------------FVPEVLE----GMEQ- 97 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEEHHHHhh--------------------hhHHHHH----Hhhh-
Confidence 357899999999999999999983 333333466776542100 0011111 1111
Q ss_pred eEEEEecCCCCCC-cccHHH-HHhhhcCC-CCC-cEEEEEcCch---------hhHHhhcCcccccccCCCCChHHHHHH
Q 001995 296 KFFLVLDDVWTEE-PQNWEQ-LLGCLRCG-SKE-SRILVTTRNE---------KVAIAIGTTKFNIIPIELLSDEDCWSI 362 (985)
Q Consensus 296 ~~LlVlDdv~~~~-~~~~~~-l~~~l~~~-~~g-s~ilvTtR~~---------~v~~~~~~~~~~~~~l~~L~~~e~~~L 362 (985)
--+|++||+.... ...|+. +...+... ..| .++|+||+.. ++...+... .+++++++++++-.++
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g--~~~~l~~~~~~~~~~~ 175 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWG--QIYKLQPLSDEEKLQA 175 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCC--ceeeecCCCHHHHHHH
Confidence 2478999996432 234543 32333211 123 3799999854 233344444 5889999999999999
Q ss_pred HHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHHHHHhhh
Q 001995 363 FSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVKTLGSLL 405 (985)
Q Consensus 363 f~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~~~~L 405 (985)
+.+++...+. .. -+++..-|++.+.|..-++..+-..+
T Consensus 176 l~~~a~~~~~--~l---~~~v~~~L~~~~~~d~r~l~~~l~~l 213 (235)
T PRK08084 176 LQLRARLRGF--EL---PEDVGRFLLKRLDREMRTLFMTLDQL 213 (235)
T ss_pred HHHHHHHcCC--CC---CHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 8886654322 11 23567778888887766555444433
No 94
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.12 E-value=5.8e-06 Score=89.06 Aligned_cols=90 Identities=17% Similarity=0.183 Sum_probs=61.2
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC--CHHHHHHHHHHHhcCCCCCCCCHHH------HHH
Q 001995 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF--DDIRIAKAILESLKGSATNAVESET------VLK 286 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~------~~~ 286 (985)
.-+...|+|++|+||||||+++|++.... +|+.++||.+.+.. ++.++++.+...+-....+...... +.+
T Consensus 168 kGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie 246 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIE 246 (416)
T ss_pred cCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHH
Confidence 45678999999999999999999964444 89999999998877 6777777776332222222222111 111
Q ss_pred HHHHH-hcCceEEEEecCCC
Q 001995 287 QLRES-IEGKKFFLVLDDVW 305 (985)
Q Consensus 287 ~l~~~-l~~k~~LlVlDdv~ 305 (985)
.-... -.|++++|++|++.
T Consensus 247 ~Ae~~~e~G~dVlL~iDsIt 266 (416)
T PRK09376 247 KAKRLVEHGKDVVILLDSIT 266 (416)
T ss_pred HHHHHHHcCCCEEEEEEChH
Confidence 11111 25899999999994
No 95
>PRK09087 hypothetical protein; Validated
Probab=98.11 E-value=6.2e-05 Score=77.46 Aligned_cols=145 Identities=15% Similarity=0.169 Sum_probs=87.5
Q ss_pred CEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCc
Q 001995 216 PTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEGK 295 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 295 (985)
.+.+.|+|+.|+|||+|++.++... ...+++.. .+...++.. +.+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~-------~~~~i~~~------~~~~~~~~~---------------------~~~- 88 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKS-------DALLIHPN------EIGSDAANA---------------------AAE- 88 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhc-------CCEEecHH------HcchHHHHh---------------------hhc-
Confidence 3578999999999999999888631 12244321 111111111 111
Q ss_pred eEEEEecCCCCCCcccHHHHHhhhcC-CCCCcEEEEEcCc---------hhhHHhhcCcccccccCCCCChHHHHHHHHH
Q 001995 296 KFFLVLDDVWTEEPQNWEQLLGCLRC-GSKESRILVTTRN---------EKVAIAIGTTKFNIIPIELLSDEDCWSIFSQ 365 (985)
Q Consensus 296 ~~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~ilvTtR~---------~~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~ 365 (985)
-+|++||+..... .-+.+...+.. ...|..||+|++. +++...+... ..+++++++.++-.+++.+
T Consensus 89 -~~l~iDDi~~~~~-~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~g--l~~~l~~pd~e~~~~iL~~ 164 (226)
T PRK09087 89 -GPVLIEDIDAGGF-DETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAA--TVVEIGEPDDALLSQVIFK 164 (226)
T ss_pred -CeEEEECCCCCCC-CHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCC--ceeecCCCCHHHHHHHHHH
Confidence 2788899954221 11234333321 1335679999874 3344444444 6899999999999999998
Q ss_pred HhcCCCCCcccchhHHHHHHHHHHhcCCChhHHHHHHhh
Q 001995 366 LALSRRLDIEESENFENIGRQIVSKCKGLPLAVKTLGSL 404 (985)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~~~~ 404 (985)
.+...... --+++..-|++++.|..-++..+-..
T Consensus 165 ~~~~~~~~-----l~~ev~~~La~~~~r~~~~l~~~l~~ 198 (226)
T PRK09087 165 LFADRQLY-----VDPHVVYYLVSRMERSLFAAQTIVDR 198 (226)
T ss_pred HHHHcCCC-----CCHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 87544221 12356777888888877766544333
No 96
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.11 E-value=1.7e-06 Score=84.13 Aligned_cols=106 Identities=27% Similarity=0.293 Sum_probs=41.2
Q ss_pred cCCcceeecCC--CCCCCCcccc-cCCCCCeEecCCCCCccccchhhcCCCCCcEeeccCcccccccchhh-hhccccce
Q 001995 602 RLTCLRSIDGL--PVGQIPKGIK-KLIHLRYLALGENPWIKELPEALCELCNLQTLDVSLCHYLKRLPERI-GQLINLRH 677 (985)
Q Consensus 602 ~l~~Lr~L~l~--~~~~lp~~i~-~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i-~~L~~L~~ 677 (985)
+...++.|+|. .+..+ +.++ .+.+|+.|+|++|. |+.++. +..|++|++|++++|. +..++..+ ..+++|++
T Consensus 17 n~~~~~~L~L~~n~I~~I-e~L~~~l~~L~~L~Ls~N~-I~~l~~-l~~L~~L~~L~L~~N~-I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTI-ENLGATLDKLEVLDLSNNQ-ITKLEG-LPGLPRLKTLDLSNNR-ISSISEGLDKNLPNLQE 92 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS---S--TT-----TT--EEE--SS----S-CHHHHHH-TT--E
T ss_pred cccccccccccccccccc-cchhhhhcCCCEEECCCCC-CccccC-ccChhhhhhcccCCCC-CCccccchHHhCCcCCE
Confidence 34456666666 34444 3455 57899999999999 999874 8889999999999998 88887666 46999999
Q ss_pred eecccccccccccCCCcCCCCCCCCccCceEecCC
Q 001995 678 LMNSKEEWSRLSYMPRGMERLTGLRTLGAFVASGG 712 (985)
Q Consensus 678 L~l~~~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~ 712 (985)
|++++|....+..+ ..+..+++|+.|++.+++.+
T Consensus 93 L~L~~N~I~~l~~l-~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 93 LYLSNNKISDLNEL-EPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp EE-TTS---SCCCC-GGGGG-TT--EEE-TT-GGG
T ss_pred EECcCCcCCChHHh-HHHHcCCCcceeeccCCccc
Confidence 99998876555443 34566777877777655544
No 97
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.07 E-value=6.5e-05 Score=77.03 Aligned_cols=165 Identities=15% Similarity=0.235 Sum_probs=96.0
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhccCC--ceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH
Q 001995 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFN--EKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRES 291 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 291 (985)
.....+.|+|..|+|||.|.+++++ ......+ .+++++ ..++...+...+... .. ..+++.
T Consensus 32 ~~~~~l~l~G~~G~GKTHLL~Ai~~--~~~~~~~~~~v~y~~------~~~f~~~~~~~~~~~-----~~----~~~~~~ 94 (219)
T PF00308_consen 32 ERYNPLFLYGPSGLGKTHLLQAIAN--EAQKQHPGKRVVYLS------AEEFIREFADALRDG-----EI----EEFKDR 94 (219)
T ss_dssp TSSSEEEEEESTTSSHHHHHHHHHH--HHHHHCTTS-EEEEE------HHHHHHHHHHHHHTT-----SH----HHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHH--HHHhccccccceeec------HHHHHHHHHHHHHcc-----cc----hhhhhh
Confidence 3455689999999999999999999 4433322 355664 345666666665431 12 233344
Q ss_pred hcCceEEEEecCCCCCCc-ccHHH-HHhhhcC-CCCCcEEEEEcCchh---------hHHhhcCcccccccCCCCChHHH
Q 001995 292 IEGKKFFLVLDDVWTEEP-QNWEQ-LLGCLRC-GSKESRILVTTRNEK---------VAIAIGTTKFNIIPIELLSDEDC 359 (985)
Q Consensus 292 l~~k~~LlVlDdv~~~~~-~~~~~-l~~~l~~-~~~gs~ilvTtR~~~---------v~~~~~~~~~~~~~l~~L~~~e~ 359 (985)
++ .-=+|++||++.... ..|.. +...+.. ...|.+||+|++... +...+... -.+++++.+.++-
T Consensus 95 ~~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~G--l~~~l~~pd~~~r 171 (219)
T PF00308_consen 95 LR-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWG--LVVELQPPDDEDR 171 (219)
T ss_dssp HC-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCS--EEEEE----HHHH
T ss_pred hh-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhc--chhhcCCCCHHHH
Confidence 44 345789999965332 23333 3333321 134668999996532 22334444 5789999999999
Q ss_pred HHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHHHHHh
Q 001995 360 WSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVKTLGS 403 (985)
Q Consensus 360 ~~Lf~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~~~ 403 (985)
.+++.+++...+.. --++++.-|++.+.+..-.+..+-.
T Consensus 172 ~~il~~~a~~~~~~-----l~~~v~~~l~~~~~~~~r~L~~~l~ 210 (219)
T PF00308_consen 172 RRILQKKAKERGIE-----LPEEVIEYLARRFRRDVRELEGALN 210 (219)
T ss_dssp HHHHHHHHHHTT-------S-HHHHHHHHHHTTSSHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-----CcHHHHHHHHHhhcCCHHHHHHHHH
Confidence 99999988655432 2235566777777666555544433
No 98
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.06 E-value=9.1e-05 Score=86.71 Aligned_cols=196 Identities=15% Similarity=0.188 Sum_probs=113.3
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCC--ceEEEEeCC
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFN--EKIWVCVSE 256 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~--~~~wv~~~~ 256 (985)
+++|.+..++.|.+++..+. -..-+.++|+.|+||||+|+.+++.-.-..... ...+-
T Consensus 25 dliGq~~~v~~L~~~~~~gr----------------i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~---- 84 (598)
T PRK09111 25 DLIGQEAMVRTLTNAFETGR----------------IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTID---- 84 (598)
T ss_pred HhcCcHHHHHHHHHHHHcCC----------------CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccc----
Confidence 78999999999999997443 345788999999999999999987311110000 00000
Q ss_pred CCCHHHHHHHHHHHhcC-----CCCCCCCHHHHHHHHHHHh-----cCceEEEEecCCCCCCcccHHHHHhhhcCCCCCc
Q 001995 257 PFDDIRIAKAILESLKG-----SATNAVESETVLKQLRESI-----EGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKES 326 (985)
Q Consensus 257 ~~~~~~~~~~i~~~l~~-----~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 326 (985)
....-...+.|...... ........+++.. +.+.+ .+++-++|+|++........+.|+..+......+
T Consensus 85 ~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IRe-Iie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~ 163 (598)
T PRK09111 85 LCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIRE-IIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHV 163 (598)
T ss_pred cCcccHHHHHHhcCCCCceEEecccccCCHHHHHH-HHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCe
Confidence 00000111111111000 0001122233222 11112 2455689999997766667788888887666666
Q ss_pred EEEEEc-CchhhHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHHHH
Q 001995 327 RILVTT-RNEKVAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVKTL 401 (985)
Q Consensus 327 ~ilvTt-R~~~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~ 401 (985)
.+|++| ....+...+.. ....+++.+++.++....+.+.+-..+.. -..+....|++.++|.+.-+...
T Consensus 164 ~fIl~tte~~kll~tI~S-Rcq~~~f~~l~~~el~~~L~~i~~kegi~-----i~~eAl~lIa~~a~Gdlr~al~~ 233 (598)
T PRK09111 164 KFIFATTEIRKVPVTVLS-RCQRFDLRRIEADVLAAHLSRIAAKEGVE-----VEDEALALIARAAEGSVRDGLSL 233 (598)
T ss_pred EEEEEeCChhhhhHHHHh-heeEEEecCCCHHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 666555 43333322211 12578999999999999888866433221 11255788899999988655443
No 99
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.06 E-value=4.7e-05 Score=79.12 Aligned_cols=159 Identities=18% Similarity=0.185 Sum_probs=97.6
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc
Q 001995 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIE 293 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 293 (985)
+....+.+||++|.||||||+.+.+..+... ..||..|....-..-.++|+++... ...+.
T Consensus 160 ~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~aq~---------------~~~l~ 220 (554)
T KOG2028|consen 160 NRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQAQN---------------EKSLT 220 (554)
T ss_pred CCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHHHH---------------HHhhh
Confidence 5677889999999999999999998533222 4567766544444444555444211 12346
Q ss_pred CceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEEEE--EcCchhhHH---hhcCcccccccCCCCChHHHHHHHHHHhc
Q 001995 294 GKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRILV--TTRNEKVAI---AIGTTKFNIIPIELLSDEDCWSIFSQLAL 368 (985)
Q Consensus 294 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv--TtR~~~v~~---~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~ 368 (985)
++|.+|++|.|...+..+-+. +||.-.+|+-++| ||.++...- .+.. ..++.|++|..++-..++.+...
T Consensus 221 krkTilFiDEiHRFNksQQD~---fLP~VE~G~I~lIGATTENPSFqln~aLlSR--C~VfvLekL~~n~v~~iL~raia 295 (554)
T KOG2028|consen 221 KRKTILFIDEIHRFNKSQQDT---FLPHVENGDITLIGATTENPSFQLNAALLSR--CRVFVLEKLPVNAVVTILMRAIA 295 (554)
T ss_pred cceeEEEeHHhhhhhhhhhhc---ccceeccCceEEEecccCCCccchhHHHHhc--cceeEeccCCHHHHHHHHHHHHH
Confidence 789999999997654433333 3454456665555 566654321 1121 26889999999999998887432
Q ss_pred ---CCCCCc--ccc---hhHHHHHHHHHHhcCCChh
Q 001995 369 ---SRRLDI--EES---ENFENIGRQIVSKCKGLPL 396 (985)
Q Consensus 369 ---~~~~~~--~~~---~~~~~~~~~I~~~~~GlPL 396 (985)
...... -+. .-...+..-++..|+|-.-
T Consensus 296 ~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 296 SLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred hhccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 111100 111 1234566777778888654
No 100
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.06 E-value=0.00012 Score=85.18 Aligned_cols=198 Identities=16% Similarity=0.189 Sum_probs=113.3
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 258 (985)
+++|.+..++.|.+++..+. -...+.++|+.|+||||+|+.++.. +.... ...+ ...
T Consensus 14 eivGq~~i~~~L~~~i~~~r----------------~~ha~Lf~Gp~G~GKTt~A~~lAk~--l~c~~-~~~~----~pC 70 (584)
T PRK14952 14 EVVGQEHVTEPLSSALDAGR----------------INHAYLFSGPRGCGKTSSARILARS--LNCAQ-GPTA----TPC 70 (584)
T ss_pred HhcCcHHHHHHHHHHHHcCC----------------CCeEEEEECCCCCCHHHHHHHHHHH--hcccc-CCCC----Ccc
Confidence 78999999999999997432 3456789999999999999999863 11000 0000 000
Q ss_pred CHHHHHHHHHHHhc-------CCCCCCCCHHHH---HHHHHHH-hcCceEEEEecCCCCCCcccHHHHHhhhcCCCCCcE
Q 001995 259 DDIRIAKAILESLK-------GSATNAVESETV---LKQLRES-IEGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESR 327 (985)
Q Consensus 259 ~~~~~~~~i~~~l~-------~~~~~~~~~~~~---~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 327 (985)
+.-...+.|...-. .+.......+++ .+.+... ..+++-++|+|++........+.|+..+........
T Consensus 71 g~C~~C~~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~ 150 (584)
T PRK14952 71 GVCESCVALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLI 150 (584)
T ss_pred cccHHHHHhhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeE
Confidence 00011111110000 000011112222 1111111 135566899999988777788888888887666666
Q ss_pred EEEEc-CchhhHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChh-HHHHHHhhh
Q 001995 328 ILVTT-RNEKVAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPL-AVKTLGSLL 405 (985)
Q Consensus 328 ilvTt-R~~~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPL-ai~~~~~~L 405 (985)
+|++| ....+...+... ...+++.+++.++..+.+.+.+...+.. -..+....|++.++|.+- |+..+-.++
T Consensus 151 fIL~tte~~kll~TI~SR-c~~~~F~~l~~~~i~~~L~~i~~~egi~-----i~~~al~~Ia~~s~GdlR~aln~Ldql~ 224 (584)
T PRK14952 151 FIFATTEPEKVLPTIRSR-THHYPFRLLPPRTMRALIARICEQEGVV-----VDDAVYPLVIRAGGGSPRDTLSVLDQLL 224 (584)
T ss_pred EEEEeCChHhhHHHHHHh-ceEEEeeCCCHHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 55554 444433322211 2679999999999988887765433211 113456778899999774 444444433
No 101
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.06 E-value=9.2e-05 Score=85.79 Aligned_cols=197 Identities=16% Similarity=0.255 Sum_probs=112.8
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 258 (985)
+++|-+..++.|.+++..+. -...+.++|+.|+||||+|+.+++.-.-..... ...+
T Consensus 17 dIiGQe~v~~~L~~ai~~~r----------------i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~-------~~pC 73 (624)
T PRK14959 17 EVAGQETVKAILSRAAQENR----------------VAPAYLFSGTRGVGKTTIARIFAKALNCETAPT-------GEPC 73 (624)
T ss_pred HhcCCHHHHHHHHHHHHcCC----------------CCceEEEECCCCCCHHHHHHHHHHhccccCCCC-------CCCC
Confidence 68898888888888886332 246788999999999999999987321100000 0001
Q ss_pred CHHHHHHHHHHHhcC-----CCCCCCCHHHHHHHHHHH-----hcCceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEE
Q 001995 259 DDIRIAKAILESLKG-----SATNAVESETVLKQLRES-----IEGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRI 328 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~-----~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 328 (985)
+.-...+.|...... ........+++. .+.+. ..+++-++|+|++.......++.|+..+........+
T Consensus 74 g~C~sC~~i~~g~hpDv~eId~a~~~~Id~iR-~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~if 152 (624)
T PRK14959 74 NTCEQCRKVTQGMHVDVVEIDGASNRGIDDAK-RLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTF 152 (624)
T ss_pred cccHHHHHHhcCCCCceEEEecccccCHHHHH-HHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEE
Confidence 111111111110000 000011122221 12221 2356679999999776666778888888654445556
Q ss_pred EEEcCc-hhhHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCCh-hHHHHHHhhh
Q 001995 329 LVTTRN-EKVAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLP-LAVKTLGSLL 405 (985)
Q Consensus 329 lvTtR~-~~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlP-Lai~~~~~~L 405 (985)
|++|.. ..+...+.. ....+++.+++.++....+...+...+.. -..+.+..|++.++|.+ -|+..+...+
T Consensus 153 ILaTt~~~kll~TI~S-Rcq~i~F~pLs~~eL~~~L~~il~~egi~-----id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 153 VLATTEPHKFPVTIVS-RCQHFTFTRLSEAGLEAHLTKVLGREGVD-----YDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred EEecCChhhhhHHHHh-hhhccccCCCCHHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 665544 443322211 12578999999999998888765433211 12345788899999865 6777666544
No 102
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.04 E-value=0.00012 Score=83.49 Aligned_cols=169 Identities=17% Similarity=0.178 Sum_probs=102.8
Q ss_pred CEEEEEEccCCchHHHHHHHHhcchhhhccC--CceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc
Q 001995 216 PTIISITGMGGIGKTTLAKLIFNDNEVRNHF--NEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIE 293 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 293 (985)
..-+.|+|..|+|||+|++.+++ ...... ..+++++ ..++...+...+.... .....+++.+.
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~--~l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~~-------~~~~~~~~~~~ 205 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKN--YIESNFSDLKVSYMS------GDEFARKAVDILQKTH-------KEIEQFKNEIC 205 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHH--HHHHhCCCCeEEEEE------HHHHHHHHHHHHHHhh-------hHHHHHHHHhc
Confidence 34689999999999999999998 333222 2344553 3456677666654310 11233444333
Q ss_pred CceEEEEecCCCCCCc-ccH-HHHHhhhcC-CCCCcEEEEEcCchh---------hHHhhcCcccccccCCCCChHHHHH
Q 001995 294 GKKFFLVLDDVWTEEP-QNW-EQLLGCLRC-GSKESRILVTTRNEK---------VAIAIGTTKFNIIPIELLSDEDCWS 361 (985)
Q Consensus 294 ~k~~LlVlDdv~~~~~-~~~-~~l~~~l~~-~~~gs~ilvTtR~~~---------v~~~~~~~~~~~~~l~~L~~~e~~~ 361 (985)
..-+||+||+..... ..+ +.+...+.. ...|..||+|+.... +...+... -.+.+++++.++-.+
T Consensus 206 -~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~G--l~~~L~~pd~e~r~~ 282 (450)
T PRK14087 206 -QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMG--LSIAIQKLDNKTATA 282 (450)
T ss_pred -cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCC--ceeccCCcCHHHHHH
Confidence 345888999964331 122 334444432 133446888876432 22233333 467899999999999
Q ss_pred HHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHHHHHhhh
Q 001995 362 IFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVKTLGSLL 405 (985)
Q Consensus 362 Lf~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~~~~L 405 (985)
++.+++-..+.. ..-.+++..-|++.++|.|-.+..+...+
T Consensus 283 iL~~~~~~~gl~---~~l~~evl~~Ia~~~~gd~R~L~gaL~~l 323 (450)
T PRK14087 283 IIKKEIKNQNIK---QEVTEEAINFISNYYSDDVRKIKGSVSRL 323 (450)
T ss_pred HHHHHHHhcCCC---CCCCHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 999887543210 01224678889999999998776555433
No 103
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.04 E-value=0.0001 Score=89.30 Aligned_cols=190 Identities=17% Similarity=0.220 Sum_probs=110.3
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 258 (985)
+++|.+..++.|..++..+. -...+.++|+.|+||||+|+.+++.-.-...... ..+
T Consensus 16 eiiGqe~v~~~L~~~i~~~r----------------i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~-------~pC 72 (824)
T PRK07764 16 EVIGQEHVTEPLSTALDSGR----------------INHAYLFSGPRGCGKTSSARILARSLNCVEGPTS-------TPC 72 (824)
T ss_pred HhcCcHHHHHHHHHHHHhCC----------------CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCC-------CCC
Confidence 78999999999999987433 3356889999999999999999763110000000 000
Q ss_pred CHHHHHHHHHHH-------hcCCCCCCCCHHHHHHHHHHH-----hcCceEEEEecCCCCCCcccHHHHHhhhcCCCCCc
Q 001995 259 DDIRIAKAILES-------LKGSATNAVESETVLKQLRES-----IEGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKES 326 (985)
Q Consensus 259 ~~~~~~~~i~~~-------l~~~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 326 (985)
..-...+.|... +..+.......+++.. +++. ..++.-++|||+++......++.|+..+..-...+
T Consensus 73 g~C~sC~~~~~g~~~~~dv~eidaas~~~Vd~iR~-l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~ 151 (824)
T PRK07764 73 GECDSCVALAPGGPGSLDVTEIDAASHGGVDDARE-LRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHL 151 (824)
T ss_pred cccHHHHHHHcCCCCCCcEEEecccccCCHHHHHH-HHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCe
Confidence 000001111000 0000001112233222 2221 23556689999998877788888999988766666
Q ss_pred EEEEEcC-chhhHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHH
Q 001995 327 RILVTTR-NEKVAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAV 398 (985)
Q Consensus 327 ~ilvTtR-~~~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai 398 (985)
.+|++|. ...+...+... ...|++..++.++...++.+..-..+.. ........|++.++|.+..+
T Consensus 152 ~fIl~tt~~~kLl~TIrSR-c~~v~F~~l~~~~l~~~L~~il~~EGv~-----id~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 152 KFIFATTEPDKVIGTIRSR-THHYPFRLVPPEVMRGYLERICAQEGVP-----VEPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred EEEEEeCChhhhhHHHHhh-eeEEEeeCCCHHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHcCCCHHHH
Confidence 6665554 33333322211 2678999999999988887755332211 11234677899999988543
No 104
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.02 E-value=0.00015 Score=81.49 Aligned_cols=176 Identities=15% Similarity=0.254 Sum_probs=104.8
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhc--------cCCceE
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRN--------HFNEKI 250 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~--------~f~~~~ 250 (985)
+++|.+...+.+.+.+..+. -.+.+.++|+.|+||||+|+.+.+. +.. .|...+
T Consensus 18 ~iig~~~~~~~l~~~i~~~~----------------~~~~~L~~G~~G~GKt~~a~~la~~--l~~~~~~~~~~~~~~~~ 79 (367)
T PRK14970 18 DVVGQSHITNTLLNAIENNH----------------LAQALLFCGPRGVGKTTCARILARK--INQPGYDDPNEDFSFNI 79 (367)
T ss_pred hcCCcHHHHHHHHHHHHcCC----------------CCeEEEEECCCCCCHHHHHHHHHHH--hcCCCCCCCCCCCCcce
Confidence 68999999999999987432 3468899999999999999999763 211 122111
Q ss_pred EEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH----hcCceEEEEecCCCCCCcccHHHHHhhhcCCCCCc
Q 001995 251 WVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRES----IEGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKES 326 (985)
Q Consensus 251 wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 326 (985)
+.... ......+++...+.+. ..+++-++|+|++.......++.+...+.......
T Consensus 80 -~~l~~-------------------~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~ 139 (367)
T PRK14970 80 -FELDA-------------------ASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHA 139 (367)
T ss_pred -EEecc-------------------ccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCce
Confidence 11110 0111112222111110 12455689999996555555777777665544455
Q ss_pred EEEEEc-CchhhHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHH
Q 001995 327 RILVTT-RNEKVAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAV 398 (985)
Q Consensus 327 ~ilvTt-R~~~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai 398 (985)
.+|++| ....+....... ...++..+++.++....+...+...+.. -..+.+..|++.++|.+-.+
T Consensus 140 ~~Il~~~~~~kl~~~l~sr-~~~v~~~~~~~~~l~~~l~~~~~~~g~~-----i~~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 140 IFILATTEKHKIIPTILSR-CQIFDFKRITIKDIKEHLAGIAVKEGIK-----FEDDALHIIAQKADGALRDA 206 (367)
T ss_pred EEEEEeCCcccCCHHHHhc-ceeEecCCccHHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHhCCCCHHHH
Confidence 555555 333333222111 1578999999999988888766443321 11356778888899866533
No 105
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.02 E-value=0.00021 Score=82.07 Aligned_cols=180 Identities=14% Similarity=0.186 Sum_probs=107.7
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchh--hh-------------
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNE--VR------------- 243 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~--~~------------- 243 (985)
+++|-+...+.+.+++..+. -.....++|+.|+||||+|+.++..-. ..
T Consensus 17 diiGq~~i~~~L~~~i~~~~----------------i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~ 80 (486)
T PRK14953 17 EVIGQEIVVRILKNAVKLQR----------------VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCV 80 (486)
T ss_pred HccChHHHHHHHHHHHHcCC----------------CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHH
Confidence 68899999999999997432 234677899999999999999876210 00
Q ss_pred ----ccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh-----cCceEEEEecCCCCCCcccHHH
Q 001995 244 ----NHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESI-----EGKKFFLVLDDVWTEEPQNWEQ 314 (985)
Q Consensus 244 ----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~ 314 (985)
+.|...+++..+.. ...+++ ..+.+.. .+++-++|+|+++.......+.
T Consensus 81 ~i~~g~~~d~~eidaas~---------------------~gvd~i-r~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~na 138 (486)
T PRK14953 81 EIDKGSFPDLIEIDAASN---------------------RGIDDI-RALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNA 138 (486)
T ss_pred HHhcCCCCcEEEEeCccC---------------------CCHHHH-HHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHH
Confidence 01111222221111 111211 1122221 3567799999997665566777
Q ss_pred HHhhhcCCCCCcEEEEEc-CchhhHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCC
Q 001995 315 LLGCLRCGSKESRILVTT-RNEKVAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKG 393 (985)
Q Consensus 315 l~~~l~~~~~gs~ilvTt-R~~~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~I~~~~~G 393 (985)
+...+........+|++| +...+...+... ...+.+.+++.++....+.+.+-..+.. ...+.+..|++.++|
T Consensus 139 LLk~LEepp~~~v~Il~tt~~~kl~~tI~SR-c~~i~f~~ls~~el~~~L~~i~k~egi~-----id~~al~~La~~s~G 212 (486)
T PRK14953 139 LLKTLEEPPPRTIFILCTTEYDKIPPTILSR-CQRFIFSKPTKEQIKEYLKRICNEEKIE-----YEEKALDLLAQASEG 212 (486)
T ss_pred HHHHHhcCCCCeEEEEEECCHHHHHHHHHHh-ceEEEcCCCCHHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHcCC
Confidence 877777655455555544 433333222111 1578899999999988888765433221 112456778888998
Q ss_pred ChhHHHHHH
Q 001995 394 LPLAVKTLG 402 (985)
Q Consensus 394 lPLai~~~~ 402 (985)
.+-.+....
T Consensus 213 ~lr~al~~L 221 (486)
T PRK14953 213 GMRDAASLL 221 (486)
T ss_pred CHHHHHHHH
Confidence 766444433
No 106
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.02 E-value=1.1e-06 Score=88.36 Aligned_cols=108 Identities=26% Similarity=0.265 Sum_probs=78.3
Q ss_pred cccccccccEEEEEcCCCCcchhHhhhcCCCCCCCCCeEEEeeccCCCCCCCChhhhccccccEEeEeccCCCCcCCCCC
Q 001995 756 LKSKMKLVDLHLRFDSTTKTKDHRVVLECLQPPSSLEKLGIYGYAGDTISPTSDWMLSLAKLRVLTLRFCNECECLPPLG 835 (985)
Q Consensus 756 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~ 835 (985)
..-.+.++.|.+++|. ....+.+..+++|+.|++++|....+ -.|-..+-|.+.|.|++| .++++..++
T Consensus 303 vKL~Pkir~L~lS~N~-------i~~v~nLa~L~~L~~LDLS~N~Ls~~---~Gwh~KLGNIKtL~La~N-~iE~LSGL~ 371 (490)
T KOG1259|consen 303 VKLAPKLRRLILSQNR-------IRTVQNLAELPQLQLLDLSGNLLAEC---VGWHLKLGNIKTLKLAQN-KIETLSGLR 371 (490)
T ss_pred hhhccceeEEeccccc-------eeeehhhhhcccceEeecccchhHhh---hhhHhhhcCEeeeehhhh-hHhhhhhhH
Confidence 3445678888888776 22334466678899999999887776 678778899999999998 677888888
Q ss_pred CCCccceeeccCCCCceEeCCcccCCchhhhhhhhhhhcccccccCCCCCccceeeccccc
Q 001995 836 KLPCLETLVLEGMSSVKRLGNGFLGIAEDHQARADQAETASSIIRDTAFPRLETLEFLDME 896 (985)
Q Consensus 836 ~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~ 896 (985)
+|-+|..|+++++. ++.+.. ..+ .+.+|+|+.|.|.+.|
T Consensus 372 KLYSLvnLDl~~N~-Ie~lde-V~~--------------------IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 372 KLYSLVNLDLSSNQ-IEELDE-VNH--------------------IGNLPCLETLRLTGNP 410 (490)
T ss_pred hhhhheeccccccc-hhhHHH-hcc--------------------cccccHHHHHhhcCCC
Confidence 88899999998844 544422 111 2467888888777644
No 107
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.01 E-value=0.00016 Score=85.11 Aligned_cols=191 Identities=18% Similarity=0.220 Sum_probs=108.8
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 258 (985)
+++|.+..++.|..++..+. -...+.++|+.|+||||+|+.++..- ...+.. ..+-.+
T Consensus 19 dIiGQe~~v~~L~~aI~~~r----------------l~HAYLF~GP~GtGKTt~AriLAk~L-nC~~~~-~~~~pC---- 76 (725)
T PRK07133 19 DIVGQDHIVQTLKNIIKSNK----------------ISHAYLFSGPRGTGKTSVAKIFANAL-NCSHKT-DLLEPC---- 76 (725)
T ss_pred HhcCcHHHHHHHHHHHHcCC----------------CCeEEEEECCCCCcHHHHHHHHHHHh-cccccC-CCCCch----
Confidence 68999999999999997433 34567899999999999999997621 000000 000000
Q ss_pred CHHHHHHHHHH-H---hcCCCCCCCCHHHHHHHHHHHh-----cCceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEEE
Q 001995 259 DDIRIAKAILE-S---LKGSATNAVESETVLKQLRESI-----EGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRIL 329 (985)
Q Consensus 259 ~~~~~~~~i~~-~---l~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~il 329 (985)
........ . +..........+++. .+.+.+ .+++-++|+|++.......+..++..+........+|
T Consensus 77 ---~~C~~~~~~~~Dvieidaasn~~vd~IR-eLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifI 152 (725)
T PRK07133 77 ---QECIENVNNSLDIIEMDAASNNGVDEIR-ELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFI 152 (725)
T ss_pred ---hHHHHhhcCCCcEEEEeccccCCHHHHH-HHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEE
Confidence 00000000 0 000000011122221 222222 3566799999997766677888888887655555544
Q ss_pred -EEcCchhhHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChh-HHHHH
Q 001995 330 -VTTRNEKVAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPL-AVKTL 401 (985)
Q Consensus 330 -vTtR~~~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPL-ai~~~ 401 (985)
+|++...+...+... ...+++.+++.++....+...+-..+.. ...+.+..|++.++|.+- |+..+
T Consensus 153 LaTte~~KLl~TI~SR-cq~ieF~~L~~eeI~~~L~~il~kegI~-----id~eAl~~LA~lS~GslR~AlslL 220 (725)
T PRK07133 153 LATTEVHKIPLTILSR-VQRFNFRRISEDEIVSRLEFILEKENIS-----YEKNALKLIAKLSSGSLRDALSIA 220 (725)
T ss_pred EEcCChhhhhHHHHhh-ceeEEccCCCHHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 555444443322111 2589999999999988887754332211 112457789999998764 44433
No 108
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.01 E-value=7e-05 Score=88.67 Aligned_cols=195 Identities=17% Similarity=0.215 Sum_probs=113.4
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 258 (985)
+++|.+..++.|..++..+. -...+.++|+.|+||||+|+.+++. +...... .-...+
T Consensus 17 eiiGq~~~~~~L~~~i~~~~----------------i~~a~Lf~Gp~G~GKTtlA~~lA~~--l~c~~~~----~~~~~c 74 (585)
T PRK14950 17 ELVGQEHVVQTLRNAIAEGR----------------VAHAYLFTGPRGVGKTSTARILAKA--VNCTTND----PKGRPC 74 (585)
T ss_pred HhcCCHHHHHHHHHHHHhCC----------------CceEEEEECCCCCCHHHHHHHHHHH--hcCCCCC----CCCCCC
Confidence 78999999999988887432 3356789999999999999999863 2110000 000111
Q ss_pred CHHHHHHHHHHHhcCC-----CCCCCCHHHHHHHHHHHh-----cCceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEE
Q 001995 259 DDIRIAKAILESLKGS-----ATNAVESETVLKQLRESI-----EGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRI 328 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~-----~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 328 (985)
+.....+.+......+ .......+++.. +.+.+ .+++-++|+|++........+.|...+......+.+
T Consensus 75 ~~c~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~-ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~ 153 (585)
T PRK14950 75 GTCEMCRAIAEGSAVDVIEMDAASHTSVDDARE-IIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIF 153 (585)
T ss_pred ccCHHHHHHhcCCCCeEEEEeccccCCHHHHHH-HHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEE
Confidence 1122223332211110 001122233222 22221 245678999999766656677788877765556666
Q ss_pred EEEcCc-hhhHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHHHHH
Q 001995 329 LVTTRN-EKVAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVKTLG 402 (985)
Q Consensus 329 lvTtR~-~~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~~ 402 (985)
|++|.+ ..+...+... ...+.+.+++.++....+...+...+.. -..+.+..|++.++|.+..+....
T Consensus 154 Il~t~~~~kll~tI~SR-~~~i~f~~l~~~el~~~L~~~a~~egl~-----i~~eal~~La~~s~Gdlr~al~~L 222 (585)
T PRK14950 154 ILATTEVHKVPATILSR-CQRFDFHRHSVADMAAHLRKIAAAEGIN-----LEPGALEAIARAATGSMRDAENLL 222 (585)
T ss_pred EEEeCChhhhhHHHHhc-cceeeCCCCCHHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 665543 3333222111 2578888999999888888766443221 113567889999999886554443
No 109
>PRK05642 DNA replication initiation factor; Validated
Probab=98.00 E-value=0.00017 Score=75.03 Aligned_cols=156 Identities=19% Similarity=0.278 Sum_probs=94.0
Q ss_pred CEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCc
Q 001995 216 PTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEGK 295 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 295 (985)
...+.|+|..|+|||+|++.+++. ....-..++|++..+ +... .. .+.+.+.+-
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~--~~~~~~~v~y~~~~~------~~~~--------------~~----~~~~~~~~~ 98 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLR--FEQRGEPAVYLPLAE------LLDR--------------GP----ELLDNLEQY 98 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHhCCCcEEEeeHHH------HHhh--------------hH----HHHHhhhhC
Confidence 367899999999999999999873 332224567776532 1110 01 222223322
Q ss_pred eEEEEecCCCCCC-cccHHH-HHhhhcC-CCCCcEEEEEcCchhh---------HHhhcCcccccccCCCCChHHHHHHH
Q 001995 296 KFFLVLDDVWTEE-PQNWEQ-LLGCLRC-GSKESRILVTTRNEKV---------AIAIGTTKFNIIPIELLSDEDCWSIF 363 (985)
Q Consensus 296 ~~LlVlDdv~~~~-~~~~~~-l~~~l~~-~~~gs~ilvTtR~~~v---------~~~~~~~~~~~~~l~~L~~~e~~~Lf 363 (985)
. +||+||+.... ...|.. +...+.. ...|..||+|++.... ...+... .++++++++.++-.+++
T Consensus 99 d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~g--l~~~l~~~~~e~~~~il 175 (234)
T PRK05642 99 E-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLA--LVFQMRGLSDEDKLRAL 175 (234)
T ss_pred C-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcC--eeeecCCCCHHHHHHHH
Confidence 3 67899995321 234544 4444432 2345679998875331 2222223 57889999999999999
Q ss_pred HHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHHHHHhhh
Q 001995 364 SQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVKTLGSLL 405 (985)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~~~~L 405 (985)
+.++...+. ..+ +++..-|++++.|..-.+..+-..|
T Consensus 176 ~~ka~~~~~--~l~---~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 176 QLRASRRGL--HLT---DEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred HHHHHHcCC--CCC---HHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 866654322 112 3667788888888766655544444
No 110
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.98 E-value=3.3e-07 Score=100.23 Aligned_cols=133 Identities=26% Similarity=0.298 Sum_probs=87.6
Q ss_pred CccccCCCCceEEEccCcCCcchhhhHHHhhccCCcceeecCC--CCCCCCcccccCCCCCeEecCCCCCccccchhhcC
Q 001995 570 PSMVYDETKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL--PVGQIPKGIKKLIHLRYLALGENPWIKELPEALCE 647 (985)
Q Consensus 570 ~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~--~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp~~i~~ 647 (985)
+..+..+..|..|+++.+.. ..++.-+.. --|++|.++ .++.+|..|+.+.+|..|+.+.|. +..+|..++.
T Consensus 114 p~~i~~L~~lt~l~ls~Nql----S~lp~~lC~-lpLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~ne-i~slpsql~~ 187 (722)
T KOG0532|consen 114 PEAICNLEALTFLDLSSNQL----SHLPDGLCD-LPLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQLGY 187 (722)
T ss_pred chhhhhhhHHHHhhhccchh----hcCChhhhc-CcceeEEEecCccccCCcccccchhHHHhhhhhhh-hhhchHHhhh
Confidence 44445555555555555532 112221222 224555554 566677777777777777777777 7777777777
Q ss_pred CCCCcEeeccCcccccccchhhhhccccceeecccccccccccCCCcCCCCCCCCccCceEecCCC
Q 001995 648 LCNLQTLDVSLCHYLKRLPERIGQLINLRHLMNSKEEWSRLSYMPRGMERLTGLRTLGAFVASGGK 713 (985)
Q Consensus 648 L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~ 713 (985)
|..|+.|.++.|+ +..+|..+..| .|..||++ |+++..+|-.|.+|+.||+|.+-++....
T Consensus 188 l~slr~l~vrRn~-l~~lp~El~~L-pLi~lDfS---cNkis~iPv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 188 LTSLRDLNVRRNH-LEDLPEELCSL-PLIRLDFS---CNKISYLPVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred HHHHHHHHHhhhh-hhhCCHHHhCC-ceeeeecc---cCceeecchhhhhhhhheeeeeccCCCCC
Confidence 7777777777776 77777777733 47777877 77788899999999999999887665443
No 111
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.98 E-value=1.7e-06 Score=87.08 Aligned_cols=131 Identities=20% Similarity=0.171 Sum_probs=93.5
Q ss_pred ccCCCCceEEEccCcCCcchhhhHHHhhccCCcceeecCC--CCCCCCcccccCCCCCeEecCCCCCccccchhhcCCCC
Q 001995 573 VYDETKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL--PVGQIPKGIKKLIHLRYLALGENPWIKELPEALCELCN 650 (985)
Q Consensus 573 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~--~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~ 650 (985)
...+..|..+++++|.. .. +.....-.+.+|+|+++ .+..+ .++..|.+|..|||++|. +.++-..-.+|-|
T Consensus 280 ~dTWq~LtelDLS~N~I---~~-iDESvKL~Pkir~L~lS~N~i~~v-~nLa~L~~L~~LDLS~N~-Ls~~~Gwh~KLGN 353 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLI---TQ-IDESVKLAPKLRRLILSQNRIRTV-QNLAELPQLQLLDLSGNL-LAECVGWHLKLGN 353 (490)
T ss_pred cchHhhhhhccccccch---hh-hhhhhhhccceeEEeccccceeee-hhhhhcccceEeecccch-hHhhhhhHhhhcC
Confidence 34567788888888753 22 33345566778888888 44444 347778888889999888 7776655567888
Q ss_pred CcEeeccCcccccccchhhhhccccceeecccccccccccCCCcCCCCCCCCccCceEecCC
Q 001995 651 LQTLDVSLCHYLKRLPERIGQLINLRHLMNSKEEWSRLSYMPRGMERLTGLRTLGAFVASGG 712 (985)
Q Consensus 651 L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~ 712 (985)
.++|.|.+|. ++.+ .++.+|-+|..||+++|....+..+ .+||+|+.|+++.+.++...
T Consensus 354 IKtL~La~N~-iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV-~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 354 IKTLKLAQNK-IETL-SGLRKLYSLVNLDLSSNQIEELDEV-NHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred Eeeeehhhhh-Hhhh-hhhHhhhhheeccccccchhhHHHh-cccccccHHHHHhhcCCCcc
Confidence 8999998887 7766 4688888899999987765443333 57888888888887655443
No 112
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.96 E-value=0.00024 Score=83.42 Aligned_cols=201 Identities=14% Similarity=0.207 Sum_probs=111.3
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEE-eCCC
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVC-VSEP 257 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~-~~~~ 257 (985)
+++|-+..++.|..++..+. -...+.++|+.|+||||+|+.+++.-.-...++...|.. +...
T Consensus 17 eivGQe~i~~~L~~~i~~~r----------------i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~ 80 (620)
T PRK14954 17 DITAQEHITHTIQNSLRMDR----------------VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEP 80 (620)
T ss_pred HhcCcHHHHHHHHHHHHcCC----------------CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCC
Confidence 78999999999999887332 235688999999999999999876311111110001110 0011
Q ss_pred CCHHHHHHHHHHHhcC-----CCCCCCCHHHHHHHHHHH----hcCceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEE
Q 001995 258 FDDIRIAKAILESLKG-----SATNAVESETVLKQLRES----IEGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRI 328 (985)
Q Consensus 258 ~~~~~~~~~i~~~l~~-----~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 328 (985)
...-...+.+...-.. ........+++...+... ..+.+-++|+|+++.......+.|...+......+.+
T Consensus 81 Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~ 160 (620)
T PRK14954 81 CGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIF 160 (620)
T ss_pred CccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEE
Confidence 1111111111110000 000112233333322222 2355668899999776666778888888766555665
Q ss_pred EEEc-CchhhHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChh-HHHHH
Q 001995 329 LVTT-RNEKVAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPL-AVKTL 401 (985)
Q Consensus 329 lvTt-R~~~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPL-ai~~~ 401 (985)
|++| +...+...+... ...+++.+++.++....+.+.+...+.. -..+.+..|++.++|..- |+..+
T Consensus 161 IL~t~~~~kLl~TI~SR-c~~vef~~l~~~ei~~~L~~i~~~egi~-----I~~eal~~La~~s~Gdlr~al~eL 229 (620)
T PRK14954 161 IFATTELHKIPATIASR-CQRFNFKRIPLDEIQSQLQMICRAEGIQ-----IDADALQLIARKAQGSMRDAQSIL 229 (620)
T ss_pred EEEeCChhhhhHHHHhh-ceEEecCCCCHHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHhCCCHHHHHHHH
Confidence 5444 444443322211 2689999999999888887655432211 113457889999999554 44433
No 113
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.96 E-value=6.2e-05 Score=84.20 Aligned_cols=187 Identities=17% Similarity=0.178 Sum_probs=99.3
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 258 (985)
++.|+++.+++|.+.+...-.. +... ...+-..++-+.|+|++|+|||++|+.+++ .....| +.+..
T Consensus 123 di~Gl~~~~~~l~~~i~~~~~~--~~~~--~~~g~~~p~gvLL~GppGtGKT~lakaia~--~l~~~~-----~~v~~-- 189 (364)
T TIGR01242 123 DIGGLEEQIREIREAVELPLKH--PELF--EEVGIEPPKGVLLYGPPGTGKTLLAKAVAH--ETNATF-----IRVVG-- 189 (364)
T ss_pred HhCChHHHHHHHHHHHHHHhcC--HHHH--HhcCCCCCceEEEECCCCCCHHHHHHHHHH--hCCCCE-----Eecch--
Confidence 7899999999999887532100 0000 000012345699999999999999999998 333332 22211
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCC-----------CcccHHHHHhhh---cC--C
Q 001995 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTE-----------EPQNWEQLLGCL---RC--G 322 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----------~~~~~~~l~~~l---~~--~ 322 (985)
..+. ....+. ....+...+...-...+.+|+||+++.. +......+...+ .. .
T Consensus 190 --~~l~----~~~~g~-----~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~ 258 (364)
T TIGR01242 190 --SELV----RKYIGE-----GARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDP 258 (364)
T ss_pred --HHHH----HHhhhH-----HHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCC
Confidence 1111 111000 0111111222222346789999998642 111122232222 21 1
Q ss_pred CCCcEEEEEcCchhhH-HhhcC--cccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCCh
Q 001995 323 SKESRILVTTRNEKVA-IAIGT--TKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLP 395 (985)
Q Consensus 323 ~~gs~ilvTtR~~~v~-~~~~~--~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlP 395 (985)
..+.+||.||...... ..+.. .-...+.+...+.++..++|..+....... ...+ ...+++.+.|..
T Consensus 259 ~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~--~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 259 RGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLA--EDVD----LEAIAKMTEGAS 328 (364)
T ss_pred CCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCC--ccCC----HHHHHHHcCCCC
Confidence 3466788888754321 11111 001468899999999999999877543221 1112 456777777654
No 114
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.95 E-value=8.7e-07 Score=91.67 Aligned_cols=148 Identities=21% Similarity=0.142 Sum_probs=75.4
Q ss_pred cccccccEEEEEcCCCCcchhHhhhcCCCCCCCCCeEEEeeccCCCCC--CCChhhhccccccEEeEeccCCCCc----C
Q 001995 758 SKMKLVDLHLRFDSTTKTKDHRVVLECLQPPSSLEKLGIYGYAGDTIS--PTSDWMLSLAKLRVLTLRFCNECEC----L 831 (985)
Q Consensus 758 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~~p~~~~~l~~L~~L~L~~~~~~~~----l 831 (985)
+.++|+.+....|... .......-..++.++.|+.+.+..|.+..-. .+-..+..+++|+.|+|.+|..... +
T Consensus 155 ~~~~Lrv~i~~rNrle-n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~L 233 (382)
T KOG1909|consen 155 SKPKLRVFICGRNRLE-NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVAL 233 (382)
T ss_pred CCcceEEEEeeccccc-cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHH
Confidence 3456666666655411 1112223334555677787777776533210 0012234677888888887743221 1
Q ss_pred -CCCCCCCccceeeccCCCCceEeCCcccCCchhhhhhhhhhhcccccccCCCCCccceeeccccccccccccccccCcc
Q 001995 832 -PPLGKLPCLETLVLEGMSSVKRLGNGFLGIAEDHQARADQAETASSIIRDTAFPRLETLEFLDMEKWEEWDDCEIAGGK 910 (985)
Q Consensus 832 -~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~ 910 (985)
..+..+|+|+.|++.+|. ++.-+..-+... . ...+|+|+.|.+.++. ++.-.....+...
T Consensus 234 akaL~s~~~L~El~l~dcl-l~~~Ga~a~~~a----------------l-~~~~p~L~vl~l~gNe-It~da~~~la~~~ 294 (382)
T KOG1909|consen 234 AKALSSWPHLRELNLGDCL-LENEGAIAFVDA----------------L-KESAPSLEVLELAGNE-ITRDAALALAACM 294 (382)
T ss_pred HHHhcccchheeecccccc-cccccHHHHHHH----------------H-hccCCCCceeccCcch-hHHHHHHHHHHHH
Confidence 135567788888888876 332221100000 0 1347888888887753 1111000001112
Q ss_pred cccccccceeecccc
Q 001995 911 TIMPRLRHLSICWSP 925 (985)
Q Consensus 911 ~~lp~L~~L~i~~c~ 925 (985)
...|.|+.|++++|.
T Consensus 295 ~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 295 AEKPDLEKLNLNGNR 309 (382)
T ss_pred hcchhhHHhcCCccc
Confidence 247888888888874
No 115
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=3.9e-07 Score=91.76 Aligned_cols=161 Identities=20% Similarity=0.146 Sum_probs=108.3
Q ss_pred cccccccccEEEEEcCCCCcchhHhhhcCCCCCCCCCeEEEeeccCCCCCCCChhhhccccccEEeEeccCCCCcC----
Q 001995 756 LKSKMKLVDLHLRFDSTTKTKDHRVVLECLQPPSSLEKLGIYGYAGDTISPTSDWMLSLAKLRVLTLRFCNECECL---- 831 (985)
Q Consensus 756 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l---- 831 (985)
+..|.+|+.|+|.+.. ..+.+...+..-.+|+.|+|++|.|.+-..+--.+.+++.|.+|+|+.|......
T Consensus 206 Ls~C~kLk~lSlEg~~-----LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~ 280 (419)
T KOG2120|consen 206 LSQCSKLKNLSLEGLR-----LDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVA 280 (419)
T ss_pred HHHHHhhhhccccccc-----cCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHH
Confidence 4445556666665543 2334445566678999999999987654322334568999999999999654321
Q ss_pred -CCCCCCCccceeeccCCCCceEeCCcccCCchhhhhhhhhhhcccccccCCCCCccceeeccccccccccccccccCcc
Q 001995 832 -PPLGKLPCLETLVLEGMSSVKRLGNGFLGIAEDHQARADQAETASSIIRDTAFPRLETLEFLDMEKWEEWDDCEIAGGK 910 (985)
Q Consensus 832 -~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~ 910 (985)
..++ ++|+.|+|+||.. .+.+. .+..+ ...+|+|..|+|+++..++.-... ..
T Consensus 281 V~his--e~l~~LNlsG~rr--nl~~s-----h~~tL-------------~~rcp~l~~LDLSD~v~l~~~~~~----~~ 334 (419)
T KOG2120|consen 281 VAHIS--ETLTQLNLSGYRR--NLQKS-----HLSTL-------------VRRCPNLVHLDLSDSVMLKNDCFQ----EF 334 (419)
T ss_pred Hhhhc--hhhhhhhhhhhHh--hhhhh-----HHHHH-------------HHhCCceeeeccccccccCchHHH----HH
Confidence 1233 7899999999752 22211 00000 245899999999999888773332 33
Q ss_pred cccccccceeecccccCCCCCC---CCCCCCCcCeEEecCch
Q 001995 911 TIMPRLRHLSICWSPELKALPD---YILGSTSLDKLLIYYSR 949 (985)
Q Consensus 911 ~~lp~L~~L~i~~c~~L~~lp~---~~~~l~~L~~L~i~~c~ 949 (985)
..|+.|++|.++.|..+. |. .+...|+|..|++.||-
T Consensus 335 ~kf~~L~~lSlsRCY~i~--p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 335 FKFNYLQHLSLSRCYDII--PETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred HhcchheeeehhhhcCCC--hHHeeeeccCcceEEEEecccc
Confidence 479999999999998664 32 34678899999999984
No 116
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.91 E-value=0.0001 Score=81.09 Aligned_cols=148 Identities=20% Similarity=0.278 Sum_probs=85.1
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 258 (985)
+++|.+...+.+..++..+. -..++.++|++|+||||+|+.+++. ... ....++.+. .
T Consensus 22 ~~~~~~~~~~~l~~~~~~~~----------------~~~~lll~G~~G~GKT~la~~l~~~--~~~---~~~~i~~~~-~ 79 (316)
T PHA02544 22 ECILPAADKETFKSIVKKGR----------------IPNMLLHSPSPGTGKTTVAKALCNE--VGA---EVLFVNGSD-C 79 (316)
T ss_pred HhcCcHHHHHHHHHHHhcCC----------------CCeEEEeeCcCCCCHHHHHHHHHHH--hCc---cceEeccCc-c
Confidence 78999999999999987332 3468888999999999999999873 221 223444443 1
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCC-CcccHHHHHhhhcCCCCCcEEEEEcCchh-
Q 001995 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTE-EPQNWEQLLGCLRCGSKESRILVTTRNEK- 336 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~ilvTtR~~~- 336 (985)
. ....+..+...... ..+.+.+-+||+|++... .......+...+.....+.++|+||....
T Consensus 80 ~-~~~i~~~l~~~~~~---------------~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~ 143 (316)
T PHA02544 80 R-IDFVRNRLTRFAST---------------VSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNG 143 (316)
T ss_pred c-HHHHHHHHHHHHHh---------------hcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhh
Confidence 1 11111111111000 001234568999999654 22233345544555556778888886543
Q ss_pred hHHhhcCcccccccCCCCChHHHHHHHHH
Q 001995 337 VAIAIGTTKFNIIPIELLSDEDCWSIFSQ 365 (985)
Q Consensus 337 v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~ 365 (985)
+...+.. ....+.+...+.++..+++..
T Consensus 144 l~~~l~s-R~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 144 IIEPLRS-RCRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred chHHHHh-hceEEEeCCCCHHHHHHHHHH
Confidence 1111111 113566667777777665543
No 117
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=2.1e-06 Score=91.39 Aligned_cols=151 Identities=17% Similarity=0.103 Sum_probs=91.6
Q ss_pred CCCeEEEEEEcCCCCCccCCCccccCCCCceEEEccCcCCcchhhhHHHhhccCCcceeecCC--CCCCCCcc--cccCC
Q 001995 550 SWKARHLMITGETRSEMVPFPSMVYDETKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL--PVGQIPKG--IKKLI 625 (985)
Q Consensus 550 ~~~~r~l~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~--~~~~lp~~--i~~l~ 625 (985)
-++.|.+++.+....... .......++++|.|+++++....... +.++...+++|+.|+++ .+.....+ -..+.
T Consensus 120 ~kkL~~IsLdn~~V~~~~-~~~~~k~~~~v~~LdLS~NL~~nw~~-v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAG-IEEYSKILPNVRDLDLSRNLFHNWFP-VLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred HHhhhheeecCccccccc-hhhhhhhCCcceeecchhhhHHhHHH-HHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 357788888887763221 11356778999999999886433332 45667888888888887 12111111 23567
Q ss_pred CCCeEecCCCCCccc--cchhhcCCCCCcEeeccCcccccccchhhhhccccceeecccccccccccCC--CcCCCCCCC
Q 001995 626 HLRYLALGENPWIKE--LPEALCELCNLQTLDVSLCHYLKRLPERIGQLINLRHLMNSKEEWSRLSYMP--RGMERLTGL 701 (985)
Q Consensus 626 ~Lr~L~L~~~~~i~~--lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~l~~lp--~~i~~l~~L 701 (985)
||+.|.|+.|. +.. +-.....+++|+.|+|.+|..+..--.....+..|+.|+|++|.. ..++ .-++.++.|
T Consensus 198 ~lK~L~l~~CG-ls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~l---i~~~~~~~~~~l~~L 273 (505)
T KOG3207|consen 198 HLKQLVLNSCG-LSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNL---IDFDQGYKVGTLPGL 273 (505)
T ss_pred hhheEEeccCC-CCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcc---cccccccccccccch
Confidence 88888888887 542 233344678888888888853333223344567788888886544 2333 124445555
Q ss_pred CccCc
Q 001995 702 RTLGA 706 (985)
Q Consensus 702 ~~L~~ 706 (985)
..|++
T Consensus 274 ~~Lnl 278 (505)
T KOG3207|consen 274 NQLNL 278 (505)
T ss_pred hhhhc
Confidence 44444
No 118
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.90 E-value=7.5e-06 Score=93.29 Aligned_cols=123 Identities=28% Similarity=0.360 Sum_probs=95.5
Q ss_pred cCCCCceEEEccCcCCcchhhhHHHhhccCC-cceeecCC--CCCCCCcccccCCCCCeEecCCCCCccccchhhcCCCC
Q 001995 574 YDETKLRSLVLDQRLSFKPRIALSKLFDRLT-CLRSIDGL--PVGQIPKGIKKLIHLRYLALGENPWIKELPEALCELCN 650 (985)
Q Consensus 574 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~-~Lr~L~l~--~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~ 650 (985)
...+.+..|.+.++... . ++.....+. +|+.|+++ .+..+|..++.++.|+.|++++|. +..+|...+.+.+
T Consensus 113 ~~~~~l~~L~l~~n~i~---~-i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~ 187 (394)
T COG4886 113 LELTNLTSLDLDNNNIT---D-IPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSN 187 (394)
T ss_pred hcccceeEEecCCcccc---c-CccccccchhhcccccccccchhhhhhhhhccccccccccCCch-hhhhhhhhhhhhh
Confidence 34477888888887632 2 333344553 89999998 788888889999999999999999 9999998879999
Q ss_pred CcEeeccCcccccccchhhhhccccceeecccccccccccCCCcCCCCCCCCccC
Q 001995 651 LQTLDVSLCHYLKRLPERIGQLINLRHLMNSKEEWSRLSYMPRGMERLTGLRTLG 705 (985)
Q Consensus 651 L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~l~~lp~~i~~l~~L~~L~ 705 (985)
|+.|++++|. +..+|..+..+..|+.|.+++|.. ...+..+.+++++..|.
T Consensus 188 L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~~---~~~~~~~~~~~~l~~l~ 238 (394)
T COG4886 188 LNNLDLSGNK-ISDLPPEIELLSALEELDLSNNSI---IELLSSLSNLKNLSGLE 238 (394)
T ss_pred hhheeccCCc-cccCchhhhhhhhhhhhhhcCCcc---eecchhhhhcccccccc
Confidence 9999999998 999999888888899999997642 34444455555554443
No 119
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.90 E-value=0.00037 Score=79.90 Aligned_cols=180 Identities=12% Similarity=0.136 Sum_probs=112.1
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhh--hcc-----------
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEV--RNH----------- 245 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~--~~~----------- 245 (985)
+++|-+...+.+...+..+. -.....++|+.|+||||+|+.+++.--- ...
T Consensus 15 eiiGqe~v~~~L~~~I~~gr----------------l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~ 78 (535)
T PRK08451 15 ELIGQESVSKTLSLALDNNR----------------LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQ 78 (535)
T ss_pred HccCcHHHHHHHHHHHHcCC----------------CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHH
Confidence 78999999999999887332 3456789999999999999988763100 000
Q ss_pred -----CC-ceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH----hcCceEEEEecCCCCCCcccHHHH
Q 001995 246 -----FN-EKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRES----IEGKKFFLVLDDVWTEEPQNWEQL 315 (985)
Q Consensus 246 -----f~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l 315 (985)
+. .++.+..+.. ...+++.+.+... ..+++-++|+|++.....+..+.+
T Consensus 79 ~~~~~~h~dv~eldaas~---------------------~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NAL 137 (535)
T PRK08451 79 SALENRHIDIIEMDAASN---------------------RGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNAL 137 (535)
T ss_pred HHhhcCCCeEEEeccccc---------------------cCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHH
Confidence 11 1122211111 1123332222210 124566899999987777777888
Q ss_pred HhhhcCCCCCcEEEEEcCch-hhHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCC
Q 001995 316 LGCLRCGSKESRILVTTRNE-KVAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGL 394 (985)
Q Consensus 316 ~~~l~~~~~gs~ilvTtR~~-~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~I~~~~~Gl 394 (985)
+..+......+++|++|.+. .+....... ...+++.+++.++....+.+.+...+.. -..+.+..|++.++|.
T Consensus 138 LK~LEEpp~~t~FIL~ttd~~kL~~tI~SR-c~~~~F~~Ls~~ei~~~L~~Il~~EGi~-----i~~~Al~~Ia~~s~Gd 211 (535)
T PRK08451 138 LKTLEEPPSYVKFILATTDPLKLPATILSR-TQHFRFKQIPQNSIISHLKTILEKEGVS-----YEPEALEILARSGNGS 211 (535)
T ss_pred HHHHhhcCCceEEEEEECChhhCchHHHhh-ceeEEcCCCCHHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHcCCc
Confidence 88887666667777666553 222111111 2688999999999998887765443221 1235678899999998
Q ss_pred hhHHHHH
Q 001995 395 PLAVKTL 401 (985)
Q Consensus 395 PLai~~~ 401 (985)
+--+...
T Consensus 212 lR~alnl 218 (535)
T PRK08451 212 LRDTLTL 218 (535)
T ss_pred HHHHHHH
Confidence 8555444
No 120
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.90 E-value=2.1e-05 Score=85.41 Aligned_cols=90 Identities=18% Similarity=0.180 Sum_probs=62.4
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCC--CCHHHHHHHHHHHhcCCCCCCCCHH------HHHH
Q 001995 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEP--FDDIRIAKAILESLKGSATNAVESE------TVLK 286 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~------~~~~ 286 (985)
.-..++|+|++|.|||||++.+++... ..+|+..+||.+.+. .++.++++.++..+-....+..... .+.+
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~-~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAIT-RNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhc-ccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 446899999999999999999999532 337999899998855 7889999998654433322221111 1112
Q ss_pred HHHHH-hcCceEEEEecCCC
Q 001995 287 QLRES-IEGKKFFLVLDDVW 305 (985)
Q Consensus 287 ~l~~~-l~~k~~LlVlDdv~ 305 (985)
..... -+|++++|++|++.
T Consensus 246 ~Ae~~~~~GkdVVLlIDEit 265 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSIT 265 (415)
T ss_pred HHHHHHHcCCCeEEEEEChh
Confidence 22222 25899999999994
No 121
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.89 E-value=6.1e-05 Score=83.29 Aligned_cols=120 Identities=11% Similarity=0.118 Sum_probs=76.3
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 258 (985)
++++.++..+.+...|... +.+.++|++|+|||++|+.+++.......|..+.||.+++..
T Consensus 176 d~~i~e~~le~l~~~L~~~-------------------~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsy 236 (459)
T PRK11331 176 DLFIPETTIETILKRLTIK-------------------KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSY 236 (459)
T ss_pred cccCCHHHHHHHHHHHhcC-------------------CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccc
Confidence 6788899999999998733 367889999999999999999853334467778899999888
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh--cCceEEEEecCCCCCCccc-HHHHHhhhc
Q 001995 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESI--EGKKFFLVLDDVWTEEPQN-WEQLLGCLR 320 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~~~~-~~~l~~~l~ 320 (985)
+...++..+.-. ..... .......+.+.... .+++++||+|++...+... +..+...+.
T Consensus 237 SYeDFI~G~rP~--~vgy~-~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lLE 298 (459)
T PRK11331 237 SYEDFIQGYRPN--GVGFR-RKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLME 298 (459)
T ss_pred cHHHHhcccCCC--CCCeE-ecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhcc
Confidence 766665432110 00000 00111222222222 2478999999997655333 444544443
No 122
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.85 E-value=0.00046 Score=78.73 Aligned_cols=182 Identities=14% Similarity=0.179 Sum_probs=106.3
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhc--------------
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRN-------------- 244 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-------------- 244 (985)
+++|.+..++.+.+++..+. -...+.++|+.|+||||+|+.+++.-.-..
T Consensus 18 diiGq~~~v~~L~~~i~~~~----------------i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C 81 (451)
T PRK06305 18 EILGQDAVVAVLKNALRFNR----------------AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASC 81 (451)
T ss_pred HhcCcHHHHHHHHHHHHcCC----------------CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHH
Confidence 78999999999999987432 235788999999999999999876311000
Q ss_pred -------cCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHH-HhcCceEEEEecCCCCCCcccHHHHH
Q 001995 245 -------HFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRE-SIEGKKFFLVLDDVWTEEPQNWEQLL 316 (985)
Q Consensus 245 -------~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~ 316 (985)
+++ .+++........ .+..++.+.+.. -..+.+-++|+|++........+.+.
T Consensus 82 ~~i~~~~~~d-~~~i~g~~~~gi------------------d~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LL 142 (451)
T PRK06305 82 KEISSGTSLD-VLEIDGASHRGI------------------EDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLL 142 (451)
T ss_pred HHHhcCCCCc-eEEeeccccCCH------------------HHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHH
Confidence 011 111111000000 011111111110 11356778999999665555566777
Q ss_pred hhhcCCCCCcEEEEEcCc-hhhHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCCh
Q 001995 317 GCLRCGSKESRILVTTRN-EKVAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLP 395 (985)
Q Consensus 317 ~~l~~~~~gs~ilvTtR~-~~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlP 395 (985)
..+........+|++|.. ..+...+.. ....+++.++++++....+.+.+-..+.. -..+.+..|++.++|.+
T Consensus 143 k~lEep~~~~~~Il~t~~~~kl~~tI~s-Rc~~v~f~~l~~~el~~~L~~~~~~eg~~-----i~~~al~~L~~~s~gdl 216 (451)
T PRK06305 143 KTLEEPPQHVKFFLATTEIHKIPGTILS-RCQKMHLKRIPEETIIDKLALIAKQEGIE-----TSREALLPIARAAQGSL 216 (451)
T ss_pred HHhhcCCCCceEEEEeCChHhcchHHHH-hceEEeCCCCCHHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHcCCCH
Confidence 777765556666666633 322222111 12578999999999988887765432211 12345788999999966
Q ss_pred h-HHHHH
Q 001995 396 L-AVKTL 401 (985)
Q Consensus 396 L-ai~~~ 401 (985)
- |+..+
T Consensus 217 r~a~~~L 223 (451)
T PRK06305 217 RDAESLY 223 (451)
T ss_pred HHHHHHH
Confidence 4 44433
No 123
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.83 E-value=0.00056 Score=80.86 Aligned_cols=176 Identities=15% Similarity=0.170 Sum_probs=110.1
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhh----------------
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEV---------------- 242 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~---------------- 242 (985)
+++|.+...+.|..++..+. -...+.++|+.|+||||+|+.++..-.-
T Consensus 18 ~viGq~~~~~~L~~~i~~~~----------------l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC 81 (614)
T PRK14971 18 SVVGQEALTTTLKNAIATNK----------------LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESC 81 (614)
T ss_pred HhcCcHHHHHHHHHHHHcCC----------------CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHH
Confidence 78999999999999997432 3456889999999999999888762110
Q ss_pred -----hccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH----hcCceEEEEecCCCCCCcccHH
Q 001995 243 -----RNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRES----IEGKKFFLVLDDVWTEEPQNWE 313 (985)
Q Consensus 243 -----~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~ 313 (985)
..+|+ +..+..+.. ...+++...+.+. ..+++-++|+|++.......++
T Consensus 82 ~~~~~~~~~n-~~~ld~~~~---------------------~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~n 139 (614)
T PRK14971 82 VAFNEQRSYN-IHELDAASN---------------------NSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFN 139 (614)
T ss_pred HHHhcCCCCc-eEEeccccc---------------------CCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHH
Confidence 01121 111211111 1122222222111 1245568899999877767788
Q ss_pred HHHhhhcCCCCCcEEEE-EcCchhhHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcC
Q 001995 314 QLLGCLRCGSKESRILV-TTRNEKVAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCK 392 (985)
Q Consensus 314 ~l~~~l~~~~~gs~ilv-TtR~~~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~I~~~~~ 392 (985)
.++..+.....++.+|+ ||+...+...+... ...+++.+++.++....+.+.+...+.. ...+.+..|++.++
T Consensus 140 aLLK~LEepp~~tifIL~tt~~~kIl~tI~SR-c~iv~f~~ls~~ei~~~L~~ia~~egi~-----i~~~al~~La~~s~ 213 (614)
T PRK14971 140 AFLKTLEEPPSYAIFILATTEKHKILPTILSR-CQIFDFNRIQVADIVNHLQYVASKEGIT-----AEPEALNVIAQKAD 213 (614)
T ss_pred HHHHHHhCCCCCeEEEEEeCCchhchHHHHhh-hheeecCCCCHHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHcC
Confidence 88888887666666655 44444444332211 2689999999999998888765433221 11245788999999
Q ss_pred CChhHH
Q 001995 393 GLPLAV 398 (985)
Q Consensus 393 GlPLai 398 (985)
|..--+
T Consensus 214 gdlr~a 219 (614)
T PRK14971 214 GGMRDA 219 (614)
T ss_pred CCHHHH
Confidence 876544
No 124
>PRK06620 hypothetical protein; Validated
Probab=97.83 E-value=0.00049 Score=70.23 Aligned_cols=135 Identities=17% Similarity=0.106 Sum_probs=78.3
Q ss_pred EEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCce
Q 001995 217 TIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKK 296 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 296 (985)
+.+.|+|++|+|||+|++.+++... . .++. ..+. . + +.. +..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~--~-----~~~~--~~~~--------------------~-~-------~~~-~~~ 86 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN--A-----YIIK--DIFF--------------------N-E-------EIL-EKY 86 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC--C-----EEcc--hhhh--------------------c-h-------hHH-hcC
Confidence 6799999999999999999877321 1 2221 0000 0 0 011 123
Q ss_pred EEEEecCCCCCCcccHHHHHhhhc-CCCCCcEEEEEcCchhh-------HHhhcCcccccccCCCCChHHHHHHHHHHhc
Q 001995 297 FFLVLDDVWTEEPQNWEQLLGCLR-CGSKESRILVTTRNEKV-------AIAIGTTKFNIIPIELLSDEDCWSIFSQLAL 368 (985)
Q Consensus 297 ~LlVlDdv~~~~~~~~~~l~~~l~-~~~~gs~ilvTtR~~~v-------~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~ 368 (985)
-+|++||+..... ..+...+. ....|..||+|++.... ...+... -+++++++++++-..++.+.+.
T Consensus 87 d~lliDdi~~~~~---~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~g--l~~~l~~pd~~~~~~~l~k~~~ 161 (214)
T PRK06620 87 NAFIIEDIENWQE---PALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSV--LSILLNSPDDELIKILIFKHFS 161 (214)
T ss_pred CEEEEeccccchH---HHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCC--ceEeeCCCCHHHHHHHHHHHHH
Confidence 5788999953211 12222222 11346689999885432 2233333 4799999999998888887764
Q ss_pred CCCCCcccchhHHHHHHHHHHhcCCChhHHH
Q 001995 369 SRRLDIEESENFENIGRQIVSKCKGLPLAVK 399 (985)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~ 399 (985)
..+. . --+++..-|++++.|---.+.
T Consensus 162 ~~~l--~---l~~ev~~~L~~~~~~d~r~l~ 187 (214)
T PRK06620 162 ISSV--T---ISRQIIDFLLVNLPREYSKII 187 (214)
T ss_pred HcCC--C---CCHHHHHHHHHHccCCHHHHH
Confidence 3321 1 113567777777777654443
No 125
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.82 E-value=0.00054 Score=80.95 Aligned_cols=196 Identities=15% Similarity=0.200 Sum_probs=110.8
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 258 (985)
+++|.+...+.|..++..+. -...+.++|+.|+||||+|+.++..-. ....... .....
T Consensus 17 ~liGq~~i~~~L~~~l~~~r----------------l~~a~Lf~Gp~G~GKttlA~~lAk~L~-c~~~~~~----~~~~C 75 (620)
T PRK14948 17 ELVGQEAIATTLKNALISNR----------------IAPAYLFTGPRGTGKTSSARILAKSLN-CLNSDKP----TPEPC 75 (620)
T ss_pred hccChHHHHHHHHHHHHcCC----------------CCceEEEECCCCCChHHHHHHHHHHhc-CCCcCCC----CCCCC
Confidence 68899999999999987432 234678999999999999999987311 1010000 00111
Q ss_pred CHHHHHHHHHHHhcC-----CCCCCCCHHHHHHHHHHH----hcCceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEEE
Q 001995 259 DDIRIAKAILESLKG-----SATNAVESETVLKQLRES----IEGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRIL 329 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~-----~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~il 329 (985)
..-...+.+...... ........+++.+.+... ..+++-++|+|+++......++.|+..+........+|
T Consensus 76 g~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfI 155 (620)
T PRK14948 76 GKCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFV 155 (620)
T ss_pred cccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEE
Confidence 111222222211110 001112223332222211 12456689999998766667888888887655555555
Q ss_pred EEcCc-hhhHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHHHH
Q 001995 330 VTTRN-EKVAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVKTL 401 (985)
Q Consensus 330 vTtR~-~~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~ 401 (985)
++|.+ ..+...+.. ....+++..++.++....+...+...+.. -..+.+..|++.++|.+..+...
T Consensus 156 L~t~~~~~llpTIrS-Rc~~~~f~~l~~~ei~~~L~~ia~kegi~-----is~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 156 LATTDPQRVLPTIIS-RCQRFDFRRIPLEAMVQHLSEIAEKESIE-----IEPEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred EEeCChhhhhHHHHh-heeEEEecCCCHHHHHHHHHHHHHHhCCC-----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 54443 333222211 12578888999998888777655432211 11245788999999987654433
No 126
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.82 E-value=1.7e-05 Score=62.99 Aligned_cols=57 Identities=37% Similarity=0.496 Sum_probs=48.0
Q ss_pred CCCCeEecCCCCCccccch-hhcCCCCCcEeeccCcccccccch-hhhhccccceeecccc
Q 001995 625 IHLRYLALGENPWIKELPE-ALCELCNLQTLDVSLCHYLKRLPE-RIGQLINLRHLMNSKE 683 (985)
Q Consensus 625 ~~Lr~L~L~~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~-~i~~L~~L~~L~l~~~ 683 (985)
++|++|++++|. +..+|. .+..+++|++|++++|. +..+|+ .+..+++|++|++++|
T Consensus 1 p~L~~L~l~~n~-l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNK-LTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSST-ESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCC-CCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCC
Confidence 478999999997 889885 57889999999999888 777774 6688999999999854
No 127
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.81 E-value=0.00074 Score=73.07 Aligned_cols=197 Identities=17% Similarity=0.200 Sum_probs=114.8
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhh-------------hcc
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEV-------------RNH 245 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-------------~~~ 245 (985)
+++|.+...+.+...+..+. -.....++|+.|+||+++|..+++.--- ...
T Consensus 5 ~iiGq~~~~~~L~~~i~~~r----------------l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~ 68 (314)
T PRK07399 5 NLIGQPLAIELLTAAIKQNR----------------IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGN 68 (314)
T ss_pred HhCCHHHHHHHHHHHHHhCC----------------CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCC
Confidence 68899999999999987433 3468999999999999999888663100 122
Q ss_pred CCceEEEEeCCCCCHHHHHHHHHHHhc--CCCCCCCCHHHHHHHHHHHh-----cCceEEEEecCCCCCCcccHHHHHhh
Q 001995 246 FNEKIWVCVSEPFDDIRIAKAILESLK--GSATNAVESETVLKQLRESI-----EGKKFFLVLDDVWTEEPQNWEQLLGC 318 (985)
Q Consensus 246 f~~~~wv~~~~~~~~~~~~~~i~~~l~--~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~ 318 (985)
.+...|+.-....+-..+-..-++..+ .........+++ +.+.+.+ .+++-++|+|++........+.++..
T Consensus 69 hPDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~i-r~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~ 147 (314)
T PRK07399 69 HPDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQI-REIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKT 147 (314)
T ss_pred CCCEEEEeccccccccccchhhhhhccccccccccCcHHHH-HHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHH
Confidence 334455532100000000011111111 111112223332 2233333 35677999999987777778888888
Q ss_pred hcCCCCCcEEEEEcCchhhHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHH
Q 001995 319 LRCGSKESRILVTTRNEKVAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAV 398 (985)
Q Consensus 319 l~~~~~gs~ilvTtR~~~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai 398 (985)
+....+..-|++|+....+....... ...+++.+++.++..+.+.+....... . .....++..++|.|..+
T Consensus 148 LEEPp~~~fILi~~~~~~Ll~TI~SR-cq~i~f~~l~~~~~~~~L~~~~~~~~~-----~---~~~~~l~~~a~Gs~~~a 218 (314)
T PRK07399 148 LEEPGNGTLILIAPSPESLLPTIVSR-CQIIPFYRLSDEQLEQVLKRLGDEEIL-----N---INFPELLALAQGSPGAA 218 (314)
T ss_pred HhCCCCCeEEEEECChHhCcHHHHhh-ceEEecCCCCHHHHHHHHHHhhccccc-----h---hHHHHHHHHcCCCHHHH
Confidence 87555443344444443333322211 268999999999999999876422110 0 11357889999999765
Q ss_pred HHH
Q 001995 399 KTL 401 (985)
Q Consensus 399 ~~~ 401 (985)
..+
T Consensus 219 l~~ 221 (314)
T PRK07399 219 IAN 221 (314)
T ss_pred HHH
Confidence 443
No 128
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.80 E-value=0.00019 Score=88.19 Aligned_cols=154 Identities=16% Similarity=0.213 Sum_probs=86.2
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhcc------CCceEE-
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNH------FNEKIW- 251 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~------f~~~~w- 251 (985)
.++||+.++.+++..|.... ..-+.++|.+|+||||+|+.+++. +... ....+|
T Consensus 188 ~~iGr~~ei~~~i~~l~r~~-----------------~~n~lLvG~pGvGKTal~~~La~~--i~~~~v~~~l~~~~i~~ 248 (852)
T TIGR03345 188 PVLGRDDEIRQMIDILLRRR-----------------QNNPILTGEAGVGKTAVVEGLALR--IAAGDVPPALRNVRLLS 248 (852)
T ss_pred cccCCHHHHHHHHHHHhcCC-----------------cCceeEECCCCCCHHHHHHHHHHH--HhhCCCCccccCCeEEE
Confidence 58999999999999997433 234569999999999999999983 3211 112233
Q ss_pred EEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh-cCceEEEEecCCCCCC-------cccHH-HHHhhhcCC
Q 001995 252 VCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESI-EGKKFFLVLDDVWTEE-------PQNWE-QLLGCLRCG 322 (985)
Q Consensus 252 v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~-------~~~~~-~l~~~l~~~ 322 (985)
+..+.- ..+......-.+.+...+.+.- .+++.+|++|++.... ..+.. .+.+.+..+
T Consensus 249 l~l~~l-------------~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G 315 (852)
T TIGR03345 249 LDLGLL-------------QAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARG 315 (852)
T ss_pred eehhhh-------------hcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCC
Confidence 222210 0011111111122222222222 2568999999985421 11111 233333222
Q ss_pred CCCcEEEEEcCchhhHHhhcC-----cccccccCCCCChHHHHHHHHHH
Q 001995 323 SKESRILVTTRNEKVAIAIGT-----TKFNIIPIELLSDEDCWSIFSQL 366 (985)
Q Consensus 323 ~~gs~ilvTtR~~~v~~~~~~-----~~~~~~~l~~L~~~e~~~Lf~~~ 366 (985)
.-++|-||...+....+.. ..+..+.+++++.+++.++++..
T Consensus 316 --~l~~IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~ 362 (852)
T TIGR03345 316 --ELRTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGL 362 (852)
T ss_pred --CeEEEEecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHH
Confidence 2456666665433221111 12368999999999999997544
No 129
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.79 E-value=2.7e-05 Score=56.56 Aligned_cols=40 Identities=35% Similarity=0.495 Sum_probs=31.5
Q ss_pred CCCCeEecCCCCCccccchhhcCCCCCcEeeccCcccccccc
Q 001995 625 IHLRYLALGENPWIKELPEALCELCNLQTLDVSLCHYLKRLP 666 (985)
Q Consensus 625 ~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp 666 (985)
++|++|++++|. ++.+|..+++|++|++|++++|+ +..+|
T Consensus 1 ~~L~~L~l~~N~-i~~l~~~l~~l~~L~~L~l~~N~-i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQ-ITDLPPELSNLPNLETLNLSNNP-ISDIS 40 (44)
T ss_dssp TT-SEEEETSSS--SSHGGHGTTCTTSSEEEETSSC-CSBEG
T ss_pred CcceEEEccCCC-CcccCchHhCCCCCCEEEecCCC-CCCCc
Confidence 468889998888 88888888889999999999887 66554
No 130
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.78 E-value=0.00058 Score=80.51 Aligned_cols=195 Identities=17% Similarity=0.254 Sum_probs=108.8
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 258 (985)
+++|.+...+.|.+++..+. -...+.++|+.|+||||+|+.+++.-.-..... ...+
T Consensus 17 ~iiGq~~v~~~L~~~i~~~~----------------~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~-------~~~c 73 (576)
T PRK14965 17 DLTGQEHVSRTLQNAIDTGR----------------VAHAFLFTGARGVGKTSTARILAKALNCEQGLT-------AEPC 73 (576)
T ss_pred HccCcHHHHHHHHHHHHcCC----------------CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCC-------CCCC
Confidence 78999999999999887432 235678999999999999999876311000000 0000
Q ss_pred CHHHHHHHHHHHhcC-----CCCCCCCHHHHHHHHHHHh-----cCceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEE
Q 001995 259 DDIRIAKAILESLKG-----SATNAVESETVLKQLRESI-----EGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRI 328 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~-----~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 328 (985)
+.-...+.|...-.. ........+++ ..+.+.+ .+++-++|+|+++.......+.|+..+........+
T Consensus 74 ~~c~~c~~i~~g~~~d~~eid~~s~~~v~~i-r~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~f 152 (576)
T PRK14965 74 NVCPPCVEITEGRSVDVFEIDGASNTGVDDI-RELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKF 152 (576)
T ss_pred CccHHHHHHhcCCCCCeeeeeccCccCHHHH-HHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEE
Confidence 000011111000000 00001112222 1122222 245568999999776666778888888765555566
Q ss_pred EE-EcCchhhHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCCh-hHHHHHHh
Q 001995 329 LV-TTRNEKVAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLP-LAVKTLGS 403 (985)
Q Consensus 329 lv-TtR~~~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlP-Lai~~~~~ 403 (985)
|+ ||....+...+... ...+++.+++.++....+...+...+.. -..+....|++.++|.. .|+..+-.
T Consensus 153 Il~t~~~~kl~~tI~SR-c~~~~f~~l~~~~i~~~L~~i~~~egi~-----i~~~al~~la~~a~G~lr~al~~Ldq 223 (576)
T PRK14965 153 IFATTEPHKVPITILSR-CQRFDFRRIPLQKIVDRLRYIADQEGIS-----ISDAALALVARKGDGSMRDSLSTLDQ 223 (576)
T ss_pred EEEeCChhhhhHHHHHh-hhhhhcCCCCHHHHHHHHHHHHHHhCCC-----CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 55 44444444322211 2578899999999888777654332211 11345778889999865 44444433
No 131
>PLN03150 hypothetical protein; Provisional
Probab=97.78 E-value=3e-05 Score=92.72 Aligned_cols=90 Identities=29% Similarity=0.441 Sum_probs=57.5
Q ss_pred ceeecCC--CC-CCCCcccccCCCCCeEecCCCCCccccchhhcCCCCCcEeeccCcccccccchhhhhccccceeeccc
Q 001995 606 LRSIDGL--PV-GQIPKGIKKLIHLRYLALGENPWIKELPEALCELCNLQTLDVSLCHYLKRLPERIGQLINLRHLMNSK 682 (985)
Q Consensus 606 Lr~L~l~--~~-~~lp~~i~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~ 682 (985)
+..|+|+ .+ ..+|..|+.|.+|++|+|++|.....+|..++.|++|+.|+|++|.....+|..+++|++|++|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 4455555 22 34566777777777777777763346777777777777777777764456677777777777777775
Q ss_pred ccccccccCCCcCCC
Q 001995 683 EEWSRLSYMPRGMER 697 (985)
Q Consensus 683 ~~~~~l~~lp~~i~~ 697 (985)
|... ..+|..++.
T Consensus 500 N~l~--g~iP~~l~~ 512 (623)
T PLN03150 500 NSLS--GRVPAALGG 512 (623)
T ss_pred Cccc--ccCChHHhh
Confidence 4432 355655543
No 132
>CHL00181 cbbX CbbX; Provisional
Probab=97.78 E-value=0.0011 Score=70.85 Aligned_cols=137 Identities=15% Similarity=0.134 Sum_probs=75.6
Q ss_pred EEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCce
Q 001995 217 TIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKK 296 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 296 (985)
..+.++|++|+||||+|+.+++.....+.-...-|+.++. .. +...+.+.. .......+.+. ..
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~----~~----l~~~~~g~~-----~~~~~~~l~~a---~g 123 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR----DD----LVGQYIGHT-----APKTKEVLKKA---MG 123 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH----HH----HHHHHhccc-----hHHHHHHHHHc---cC
Confidence 4588999999999999999987321111112222454441 12 222222211 11122222222 23
Q ss_pred EEEEecCCCCC---------CcccHHHHHhhhcCCCCCcEEEEEcCchhhHHhhc------CcccccccCCCCChHHHHH
Q 001995 297 FFLVLDDVWTE---------EPQNWEQLLGCLRCGSKESRILVTTRNEKVAIAIG------TTKFNIIPIELLSDEDCWS 361 (985)
Q Consensus 297 ~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~------~~~~~~~~l~~L~~~e~~~ 361 (985)
-+|++|++... ..+..+.+...+.......+||+++....+..... ..-...+.+++++.+|..+
T Consensus 124 gVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~ 203 (287)
T CHL00181 124 GVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQ 203 (287)
T ss_pred CEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHH
Confidence 49999999642 11223345555555555667778876544332211 1112478999999999999
Q ss_pred HHHHHhcC
Q 001995 362 IFSQLALS 369 (985)
Q Consensus 362 Lf~~~~~~ 369 (985)
++.+.+..
T Consensus 204 I~~~~l~~ 211 (287)
T CHL00181 204 IAKIMLEE 211 (287)
T ss_pred HHHHHHHH
Confidence 98887644
No 133
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.76 E-value=0.00025 Score=72.71 Aligned_cols=183 Identities=15% Similarity=0.147 Sum_probs=112.8
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEE-EEeCCC
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIW-VCVSEP 257 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~w-v~~~~~ 257 (985)
+++|-+..++-+.+.+.. ...+....+|++|.|||+-|+.++..-.-.+-|++++- .++|..
T Consensus 37 e~~gQe~vV~~L~~a~~~-----------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSde 99 (346)
T KOG0989|consen 37 ELAGQEHVVQVLKNALLR-----------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDE 99 (346)
T ss_pred hhcchHHHHHHHHHHHhh-----------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccc
Confidence 688999999999888874 35678999999999999999988873222355666542 233332
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh--cCce-EEEEecCCCCCCcccHHHHHhhhcCCCCCcEEEEEcCc
Q 001995 258 FDDIRIAKAILESLKGSATNAVESETVLKQLRESI--EGKK-FFLVLDDVWTEEPQNWEQLLGCLRCGSKESRILVTTRN 334 (985)
Q Consensus 258 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~k~-~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~ 334 (985)
-... +.+. ...+...+........ ..++ -.+|||+++....+.|..++..+......++.|+.+-+
T Consensus 100 rGis-vvr~----------Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcny 168 (346)
T KOG0989|consen 100 RGIS-VVRE----------KIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNY 168 (346)
T ss_pred cccc-chhh----------hhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCC
Confidence 1111 0000 0011111111000000 0123 47899999888889999999999877666665554443
Q ss_pred h-hhHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCCh
Q 001995 335 E-KVAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLP 395 (985)
Q Consensus 335 ~-~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlP 395 (985)
- .+...+.. ....++.++|.+++...-++..+-..+.+ -..+..+.|++.++|--
T Consensus 169 lsrii~pi~S-RC~KfrFk~L~d~~iv~rL~~Ia~~E~v~-----~d~~al~~I~~~S~GdL 224 (346)
T KOG0989|consen 169 LSRIIRPLVS-RCQKFRFKKLKDEDIVDRLEKIASKEGVD-----IDDDALKLIAKISDGDL 224 (346)
T ss_pred hhhCChHHHh-hHHHhcCCCcchHHHHHHHHHHHHHhCCC-----CCHHHHHHHHHHcCCcH
Confidence 2 22211111 11578899999999988888877554433 22355788999998854
No 134
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.76 E-value=0.00081 Score=76.52 Aligned_cols=159 Identities=16% Similarity=0.197 Sum_probs=92.5
Q ss_pred CEEEEEEccCCchHHHHHHHHhcchhhhccCC--ceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc
Q 001995 216 PTIISITGMGGIGKTTLAKLIFNDNEVRNHFN--EKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIE 293 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 293 (985)
...+.|+|..|+|||+|++.+++. .....+ .++++++ ..+...+...+... ..+ .+.+.++
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~--l~~~~~~~~v~yi~~------~~~~~~~~~~~~~~-----~~~----~~~~~~~ 198 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNE--ILENNPNAKVVYVSS------EKFTNDFVNALRNN-----KME----EFKEKYR 198 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HHHhCCCCcEEEEEH------HHHHHHHHHHHHcC-----CHH----HHHHHHH
Confidence 456899999999999999999984 433332 3556643 33444555554321 122 2333333
Q ss_pred CceEEEEecCCCCCCccc-H-HHHHhhhcCC-CCCcEEEEEcCchh---------hHHhhcCcccccccCCCCChHHHHH
Q 001995 294 GKKFFLVLDDVWTEEPQN-W-EQLLGCLRCG-SKESRILVTTRNEK---------VAIAIGTTKFNIIPIELLSDEDCWS 361 (985)
Q Consensus 294 ~k~~LlVlDdv~~~~~~~-~-~~l~~~l~~~-~~gs~ilvTtR~~~---------v~~~~~~~~~~~~~l~~L~~~e~~~ 361 (985)
+ .-+|||||+....... + +.+...+... ..+..||+|+.... +...+... ..+++++.+.++-..
T Consensus 199 ~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g--~~v~i~~pd~~~r~~ 275 (405)
T TIGR00362 199 S-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWG--LVVDIEPPDLETRLA 275 (405)
T ss_pred h-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCC--eEEEeCCCCHHHHHH
Confidence 2 3488999996432221 1 2233333211 23456888876421 11122222 468899999999999
Q ss_pred HHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHH
Q 001995 362 IFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVK 399 (985)
Q Consensus 362 Lf~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~ 399 (985)
++.+.+...... . .+++...|++.+.|..-.+.
T Consensus 276 il~~~~~~~~~~--l---~~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 276 ILQKKAEEEGLE--L---PDEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred HHHHHHHHcCCC--C---CHHHHHHHHHhcCCCHHHHH
Confidence 999887554321 1 14567778888887765443
No 135
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.76 E-value=0.00089 Score=78.20 Aligned_cols=193 Identities=15% Similarity=0.150 Sum_probs=110.9
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 258 (985)
+++|-+..++.+..++..+. -...+.++|+.|+||||+|+.+++.-.-...... ..+....
T Consensus 17 diiGqe~iv~~L~~~i~~~~----------------i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~---~pC~~C~ 77 (563)
T PRK06647 17 SLEGQDFVVETLKHSIESNK----------------IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP---MPCGECS 77 (563)
T ss_pred HccCcHHHHHHHHHHHHcCC----------------CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC---CCCccch
Confidence 78999999999999997433 3457889999999999999999873110000000 0000000
Q ss_pred CHHHHHHHHHHHhcC-----CCCCCCCHHHHHHHH---HH-HhcCceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEEE
Q 001995 259 DDIRIAKAILESLKG-----SATNAVESETVLKQL---RE-SIEGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRIL 329 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~-----~~~~~~~~~~~~~~l---~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~il 329 (985)
+ -+.|...-.. ........+++.... .. -..+++-++|+|++.......++.+...+........+|
T Consensus 78 ~----C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI 153 (563)
T PRK06647 78 S----CKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFI 153 (563)
T ss_pred H----HHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEE
Confidence 0 0111100000 000112223322211 11 113566689999998776667788888887655666666
Q ss_pred EEcCc-hhhHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHHH
Q 001995 330 VTTRN-EKVAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVKT 400 (985)
Q Consensus 330 vTtR~-~~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~ 400 (985)
++|.. ..+...+... ...+++.+++.++....+.+.+...+.. -..+.+..|++.++|.+-.+..
T Consensus 154 ~~tte~~kL~~tI~SR-c~~~~f~~l~~~el~~~L~~i~~~egi~-----id~eAl~lLa~~s~GdlR~als 219 (563)
T PRK06647 154 FATTEVHKLPATIKSR-CQHFNFRLLSLEKIYNMLKKVCLEDQIK-----YEDEALKWIAYKSTGSVRDAYT 219 (563)
T ss_pred EecCChHHhHHHHHHh-ceEEEecCCCHHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHcCCCHHHHHH
Confidence 65543 3333222111 2568899999999988888766433221 1235577788999997754433
No 136
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.75 E-value=0.0012 Score=66.38 Aligned_cols=184 Identities=18% Similarity=0.263 Sum_probs=111.4
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEe-CCCCCHHHHHHHHHHHhcCCCCCCC--CHHHHHHHHHH
Q 001995 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCV-SEPFDDIRIAKAILESLKGSATNAV--ESETVLKQLRE 290 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~-~~~~~~~~~~~~i~~~l~~~~~~~~--~~~~~~~~l~~ 290 (985)
.+..++.++|.-|.|||.+++..... ..+. .++=|.+ ....+...+...++..+...+.... ..++....+.+
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~s--~~~d--~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~a 124 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLAS--LNED--QVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAA 124 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHHh--cCCC--ceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHH
Confidence 45579999999999999999944431 1111 1221333 3456778888999988877332221 12233333333
Q ss_pred Hh-cCce-EEEEecCCCCCCcccHHHHHhhhcCCCCC---cEEEEEcCchh-------hHHhhcCccccc-ccCCCCChH
Q 001995 291 SI-EGKK-FFLVLDDVWTEEPQNWEQLLGCLRCGSKE---SRILVTTRNEK-------VAIAIGTTKFNI-IPIELLSDE 357 (985)
Q Consensus 291 ~l-~~k~-~LlVlDdv~~~~~~~~~~l~~~l~~~~~g---s~ilvTtR~~~-------v~~~~~~~~~~~-~~l~~L~~~ 357 (985)
.. +++| ..+++|++.+...+..+.++-+..-...+ -+|+..-..+- +...... ...+ |++.|++.+
T Consensus 125 l~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~-R~~ir~~l~P~~~~ 203 (269)
T COG3267 125 LVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQ-RIDIRIELPPLTEA 203 (269)
T ss_pred HHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhh-eEEEEEecCCcChH
Confidence 33 4677 99999999877766666665544322112 23444333211 0111111 1134 899999999
Q ss_pred HHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHHHHHhh
Q 001995 358 DCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVKTLGSL 404 (985)
Q Consensus 358 e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~~~~ 404 (985)
+...+++.+..+...+ .+--..+....|.....|.|.+|..++..
T Consensus 204 ~t~~yl~~~Le~a~~~--~~l~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 204 ETGLYLRHRLEGAGLP--EPLFSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred HHHHHHHHHHhccCCC--cccCChhHHHHHHHHhccchHHHHHHHHH
Confidence 9999988877655432 22223456778999999999999877643
No 137
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.73 E-value=0.00064 Score=74.00 Aligned_cols=98 Identities=16% Similarity=0.205 Sum_probs=67.0
Q ss_pred CceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEEEEEcCchh-hHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCC
Q 001995 294 GKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRILVTTRNEK-VAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRL 372 (985)
Q Consensus 294 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~ 372 (985)
+++-++|+|+++..+....+.++..+.....++.+|+||.+.. +...... ....+.+.+++.+++.+.+.......
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~S-Rc~~~~~~~~~~~~~~~~L~~~~~~~-- 181 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKS-RCQQQACPLPSNEESLQWLQQALPES-- 181 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHh-hceeeeCCCcCHHHHHHHHHHhcccC--
Confidence 4444567899988888888889998887666777777777653 2222111 12678999999999999887653111
Q ss_pred CcccchhHHHHHHHHHHhcCCChhHHHHH
Q 001995 373 DIEESENFENIGRQIVSKCKGLPLAVKTL 401 (985)
Q Consensus 373 ~~~~~~~~~~~~~~I~~~~~GlPLai~~~ 401 (985)
. .+.+..++..++|.|.....+
T Consensus 182 --~-----~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 182 --D-----ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred --C-----hHHHHHHHHHcCCCHHHHHHH
Confidence 0 123567788999999755444
No 138
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.72 E-value=0.0011 Score=77.69 Aligned_cols=190 Identities=19% Similarity=0.230 Sum_probs=107.8
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhh-ccCCceEEEEeCCC
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVR-NHFNEKIWVCVSEP 257 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-~~f~~~~wv~~~~~ 257 (985)
+++|.+...+.+.+++..+. -...+.++|+.|.||||+|+.++.. +. .+-. ...+
T Consensus 17 ~viGq~~v~~~L~~~i~~~~----------------~~hayLf~Gp~GtGKTt~Ak~lAka--l~c~~~~------~~~p 72 (559)
T PRK05563 17 DVVGQEHITKTLKNAIKQGK----------------ISHAYLFSGPRGTGKTSAAKIFAKA--VNCLNPP------DGEP 72 (559)
T ss_pred hccCcHHHHHHHHHHHHcCC----------------CCeEEEEECCCCCCHHHHHHHHHHH--hcCCCCC------CCCC
Confidence 78999999999999997443 3456778999999999999998762 11 0000 0001
Q ss_pred CCHHHHHHHHHHHhcC-----CCCCCCCHHHHHHHHHHH-----hcCceEEEEecCCCCCCcccHHHHHhhhcCCCCCcE
Q 001995 258 FDDIRIAKAILESLKG-----SATNAVESETVLKQLRES-----IEGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESR 327 (985)
Q Consensus 258 ~~~~~~~~~i~~~l~~-----~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 327 (985)
.+.-...+.|...... +.......+++.. +.+. ..++.-++|+|++.......+..|...+........
T Consensus 73 C~~C~~C~~i~~g~~~dv~eidaas~~~vd~ir~-i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~i 151 (559)
T PRK05563 73 CNECEICKAITNGSLMDVIEIDAASNNGVDEIRD-IRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVI 151 (559)
T ss_pred CCccHHHHHHhcCCCCCeEEeeccccCCHHHHHH-HHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeE
Confidence 1111111111110000 0001112222221 2222 135667889999977666678888887775554555
Q ss_pred EEE-EcCchhhHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHH
Q 001995 328 ILV-TTRNEKVAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVK 399 (985)
Q Consensus 328 ilv-TtR~~~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~ 399 (985)
+|+ ||....+...+.. ....+++.+++.++....+...+-..+.. -..+.+..|++.++|.+..+.
T Consensus 152 fIlatt~~~ki~~tI~S-Rc~~~~f~~~~~~ei~~~L~~i~~~egi~-----i~~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 152 FILATTEPHKIPATILS-RCQRFDFKRISVEDIVERLKYILDKEGIE-----YEDEALRLIARAAEGGMRDAL 218 (559)
T ss_pred EEEEeCChhhCcHHHHh-HheEEecCCCCHHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHcCCCHHHHH
Confidence 554 4444333322211 12568889999999888887765433211 113457788888988776443
No 139
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.69 E-value=9.5e-05 Score=80.84 Aligned_cols=64 Identities=22% Similarity=0.295 Sum_probs=39.3
Q ss_pred cCCCCCeEecCCCCCccccchhhcCCCCCcEeeccCcccccccchhhhhccccceeecccccccccccCCCc
Q 001995 623 KLIHLRYLALGENPWIKELPEALCELCNLQTLDVSLCHYLKRLPERIGQLINLRHLMNSKEEWSRLSYMPRG 694 (985)
Q Consensus 623 ~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~l~~lp~~ 694 (985)
.+.++++|++++|. +..+|. -..+|+.|++++|..+..+|..+. .+|++|+++ +|..+..+|..
T Consensus 50 ~~~~l~~L~Is~c~-L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls--~Cs~L~sLP~s 113 (426)
T PRK15386 50 EARASGRLYIKDCD-IESLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVC--HCPEISGLPES 113 (426)
T ss_pred HhcCCCEEEeCCCC-CcccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEcc--Ccccccccccc
Confidence 34666777777775 777762 123577777777776666665442 467777777 45555555543
No 140
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.68 E-value=0.00027 Score=86.35 Aligned_cols=157 Identities=21% Similarity=0.238 Sum_probs=85.1
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchh---hhccC-CceEEEEe
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNE---VRNHF-NEKIWVCV 254 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~---~~~~f-~~~~wv~~ 254 (985)
.++||+.++++++..|.... ..-+.++|++|+|||++|+.+++... +...+ ...+|. +
T Consensus 183 ~~igr~~ei~~~~~~L~~~~-----------------~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~ 244 (731)
T TIGR02639 183 PLIGREDELERTIQVLCRRK-----------------KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-L 244 (731)
T ss_pred cccCcHHHHHHHHHHHhcCC-----------------CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-e
Confidence 58999999999999987433 23467999999999999999988321 11111 233332 1
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh-cCceEEEEecCCCCCC---------cccHHHHHhhhcCCCC
Q 001995 255 SEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESI-EGKKFFLVLDDVWTEE---------PQNWEQLLGCLRCGSK 324 (985)
Q Consensus 255 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~---------~~~~~~l~~~l~~~~~ 324 (985)
+ ...+ + .+..... +.++....+.+.+ ..++.+|++|+++.-. .+.-+.+...+.. +
T Consensus 245 ~----~~~l----~---a~~~~~g-~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~-g- 310 (731)
T TIGR02639 245 D----MGSL----L---AGTKYRG-DFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSS-G- 310 (731)
T ss_pred c----HHHH----h---hhccccc-hHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhC-C-
Confidence 1 1111 1 1111111 1222222222222 3468999999986311 1112223333332 1
Q ss_pred CcEEEEEcCchhhHHhhc-----CcccccccCCCCChHHHHHHHHHHh
Q 001995 325 ESRILVTTRNEKVAIAIG-----TTKFNIIPIELLSDEDCWSIFSQLA 367 (985)
Q Consensus 325 gs~ilvTtR~~~v~~~~~-----~~~~~~~~l~~L~~~e~~~Lf~~~~ 367 (985)
.-++|-+|...+....+. ...+..+.+++++.++..++++...
T Consensus 311 ~i~~IgaTt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 311 KLRCIGSTTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred CeEEEEecCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 234555555433211111 0123578999999999999998654
No 141
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.66 E-value=0.00075 Score=72.28 Aligned_cols=136 Identities=15% Similarity=0.142 Sum_probs=75.3
Q ss_pred EEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceE
Q 001995 218 IISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKF 297 (985)
Q Consensus 218 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~ 297 (985)
-+.++|++|.||||+|+.++......+.....-|+.++. . +++..+.+.. .......+.+. ..-
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~----~l~~~~~g~~-----~~~~~~~~~~a---~~g 123 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----D----DLVGQYIGHT-----APKTKEILKRA---MGG 123 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----H----HHhHhhcccc-----hHHHHHHHHHc---cCc
Confidence 588999999999999988876321112221223444442 1 1222222211 12222223222 336
Q ss_pred EEEecCCCCC---------CcccHHHHHhhhcCCCCCcEEEEEcCchhhHHhhcC------cccccccCCCCChHHHHHH
Q 001995 298 FLVLDDVWTE---------EPQNWEQLLGCLRCGSKESRILVTTRNEKVAIAIGT------TKFNIIPIELLSDEDCWSI 362 (985)
Q Consensus 298 LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~~------~~~~~~~l~~L~~~e~~~L 362 (985)
+|+||++... ..+.++.+...+.....+.+||+++........... .-...+++++++.+|..++
T Consensus 124 vL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I 203 (284)
T TIGR02880 124 VLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVI 203 (284)
T ss_pred EEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHH
Confidence 8999999532 122334566666555556677777764433222111 0014688999999999999
Q ss_pred HHHHhcC
Q 001995 363 FSQLALS 369 (985)
Q Consensus 363 f~~~~~~ 369 (985)
+.+.+-.
T Consensus 204 ~~~~l~~ 210 (284)
T TIGR02880 204 AGLMLKE 210 (284)
T ss_pred HHHHHHH
Confidence 8887643
No 142
>PLN03150 hypothetical protein; Provisional
Probab=97.65 E-value=8.2e-05 Score=89.00 Aligned_cols=103 Identities=23% Similarity=0.335 Sum_probs=84.9
Q ss_pred CceEEEccCcCCcchhhhHHHhhccCCcceeecCC--CC-CCCCcccccCCCCCeEecCCCCCccccchhhcCCCCCcEe
Q 001995 578 KLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL--PV-GQIPKGIKKLIHLRYLALGENPWIKELPEALCELCNLQTL 654 (985)
Q Consensus 578 ~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~--~~-~~lp~~i~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L 654 (985)
.++.|.+.++.. ...++..+.++++|+.|+++ .+ ..+|..++.+.+|++|+|++|.....+|..+++|++|++|
T Consensus 419 ~v~~L~L~~n~L---~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L 495 (623)
T PLN03150 419 FIDGLGLDNQGL---RGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRIL 495 (623)
T ss_pred EEEEEECCCCCc---cccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEE
Confidence 478888888753 33456668899999999998 34 4789899999999999999999445899999999999999
Q ss_pred eccCcccccccchhhhhc-cccceeecccc
Q 001995 655 DVSLCHYLKRLPERIGQL-INLRHLMNSKE 683 (985)
Q Consensus 655 ~l~~~~~l~~lp~~i~~L-~~L~~L~l~~~ 683 (985)
+|++|.....+|..++.+ .++..+++.+|
T Consensus 496 ~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 496 NLNGNSLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred ECcCCcccccCChHHhhccccCceEEecCC
Confidence 999999667899888764 56778888754
No 143
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.65 E-value=0.00071 Score=71.88 Aligned_cols=173 Identities=10% Similarity=0.130 Sum_probs=84.1
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 258 (985)
.++|.+..+++|.+......-.. ... .....+.+...-+.++|++|.||||+|+.+++.-.-.+......++.++.
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~-~~~-~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~-- 82 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINE-KRK-EEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER-- 82 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHH-HHH-HcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH--
Confidence 57888877766654332110000 000 00001134556789999999999999999987311111111122333322
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCCC--------cccHHHHHhhhcCCCCCcEEEE
Q 001995 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTEE--------PQNWEQLLGCLRCGSKESRILV 330 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~gs~ilv 330 (985)
..+ ....-+ .....+...+.+. ..-+|++|++.... .+..+.+...+........+|+
T Consensus 83 --~~l----~~~~~g-----~~~~~~~~~~~~a---~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vil 148 (261)
T TIGR02881 83 --ADL----VGEYIG-----HTAQKTREVIKKA---LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLIL 148 (261)
T ss_pred --HHh----hhhhcc-----chHHHHHHHHHhc---cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEe
Confidence 111 111101 1112222222222 23489999996421 1223445444444434445566
Q ss_pred EcCchhhHH------hhcCcccccccCCCCChHHHHHHHHHHhcC
Q 001995 331 TTRNEKVAI------AIGTTKFNIIPIELLSDEDCWSIFSQLALS 369 (985)
Q Consensus 331 TtR~~~v~~------~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~ 369 (985)
++....... .+...-...+++++++.++-.+++.+.+..
T Consensus 149 a~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~ 193 (261)
T TIGR02881 149 AGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKE 193 (261)
T ss_pred cCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHH
Confidence 655433211 111110145788999999999998877643
No 144
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.63 E-value=0.00047 Score=77.49 Aligned_cols=187 Identities=17% Similarity=0.186 Sum_probs=98.1
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 258 (985)
++.|+++.+++|.+.+...-... ... ...+-..++-|.++|++|.|||++|+.+++. .... |+.++.
T Consensus 132 di~Gl~~~~~~l~~~i~~pl~~~---~~~-~~~g~~~p~gvLL~GppGtGKT~lAkaia~~--~~~~-----~i~v~~-- 198 (389)
T PRK03992 132 DIGGLEEQIREVREAVELPLKKP---ELF-EEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNAT-----FIRVVG-- 198 (389)
T ss_pred HhCCcHHHHHHHHHHHHHHhhCH---HHH-HhcCCCCCCceEEECCCCCChHHHHHHHHHH--hCCC-----EEEeeh--
Confidence 78999999999988774321000 000 0000134567999999999999999999983 3222 333221
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCC-----------CcccHHHHHhhhc---C--C
Q 001995 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTE-----------EPQNWEQLLGCLR---C--G 322 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----------~~~~~~~l~~~l~---~--~ 322 (985)
.. +.....+. ....+...+...-...+.+|+||+++.. +......+...+. . .
T Consensus 199 --~~----l~~~~~g~-----~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~ 267 (389)
T PRK03992 199 --SE----LVQKFIGE-----GARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDP 267 (389)
T ss_pred --HH----HhHhhccc-----hHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCC
Confidence 11 11111111 1111122222222356789999999532 1111222333332 1 1
Q ss_pred CCCcEEEEEcCchhhH-HhhcC--cccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCCh
Q 001995 323 SKESRILVTTRNEKVA-IAIGT--TKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLP 395 (985)
Q Consensus 323 ~~gs~ilvTtR~~~v~-~~~~~--~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlP 395 (985)
..+..||.||...... ..+-. .-...+.+.+.+.++-.++|+.+....... ...+ ...+++.+.|.-
T Consensus 268 ~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~--~~~~----~~~la~~t~g~s 337 (389)
T PRK03992 268 RGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLA--DDVD----LEELAELTEGAS 337 (389)
T ss_pred CCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCC--CcCC----HHHHHHHcCCCC
Confidence 2356778777654322 22211 011468899999999999999876543221 1122 345666666643
No 145
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.62 E-value=0.00018 Score=67.63 Aligned_cols=96 Identities=24% Similarity=0.234 Sum_probs=53.8
Q ss_pred EEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCc-eE
Q 001995 219 ISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEGK-KF 297 (985)
Q Consensus 219 v~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k-~~ 297 (985)
|.|+|++|+||||+|+.+++. ...+ .+.++.+.- . ..........+...+.+.-... +.
T Consensus 1 ill~G~~G~GKT~l~~~la~~--l~~~---~~~i~~~~~--------------~-~~~~~~~~~~i~~~~~~~~~~~~~~ 60 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY--LGFP---FIEIDGSEL--------------I-SSYAGDSEQKIRDFFKKAKKSAKPC 60 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH--TTSE---EEEEETTHH--------------H-TSSTTHHHHHHHHHHHHHHHTSTSE
T ss_pred CEEECcCCCCeeHHHHHHHhh--cccc---ccccccccc--------------c-cccccccccccccccccccccccce
Confidence 579999999999999999983 3211 344443321 1 0011112223333333332333 89
Q ss_pred EEEecCCCCCCccc-----------HHHHHhhhcCCC---CCcEEEEEcCc
Q 001995 298 FLVLDDVWTEEPQN-----------WEQLLGCLRCGS---KESRILVTTRN 334 (985)
Q Consensus 298 LlVlDdv~~~~~~~-----------~~~l~~~l~~~~---~gs~ilvTtR~ 334 (985)
+|++||++...... ...+...+.... .+..||.||..
T Consensus 61 vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~ 111 (132)
T PF00004_consen 61 VLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNS 111 (132)
T ss_dssp EEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESS
T ss_pred eeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCC
Confidence 99999996533333 344555555332 24567777776
No 146
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.60 E-value=0.0029 Score=73.32 Aligned_cols=156 Identities=15% Similarity=0.197 Sum_probs=92.0
Q ss_pred EEEEEEccCCchHHHHHHHHhcchhhhccC--CceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcC
Q 001995 217 TIISITGMGGIGKTTLAKLIFNDNEVRNHF--NEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEG 294 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 294 (985)
..+.|+|..|.|||.|++.+++. ....+ ..+++++. .++...+...+... .. ..+++.+..
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~--a~~~~~g~~V~Yita------eef~~el~~al~~~-----~~----~~f~~~y~~ 377 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHY--ARRLYPGTRVRYVSS------EEFTNEFINSIRDG-----KG----DSFRRRYRE 377 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEeeH------HHHHHHHHHHHHhc-----cH----HHHHHHhhc
Confidence 35899999999999999999983 43322 23556643 34444554444221 11 223333333
Q ss_pred ceEEEEecCCCCCCc-ccHH-HHHhhhcCC-CCCcEEEEEcCch---------hhHHhhcCcccccccCCCCChHHHHHH
Q 001995 295 KKFFLVLDDVWTEEP-QNWE-QLLGCLRCG-SKESRILVTTRNE---------KVAIAIGTTKFNIIPIELLSDEDCWSI 362 (985)
Q Consensus 295 k~~LlVlDdv~~~~~-~~~~-~l~~~l~~~-~~gs~ilvTtR~~---------~v~~~~~~~~~~~~~l~~L~~~e~~~L 362 (985)
-=+|||||+..... ..|. .++..+... ..|..|||||... .+...+... -++++++.+.+.-.++
T Consensus 378 -~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~G--Lvv~I~~PD~EtR~aI 454 (617)
T PRK14086 378 -MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWG--LITDVQPPELETRIAI 454 (617)
T ss_pred -CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcC--ceEEcCCCCHHHHHHH
Confidence 35788999965322 2232 233333311 2355688888863 223334444 5789999999999999
Q ss_pred HHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhH
Q 001995 363 FSQLALSRRLDIEESENFENIGRQIVSKCKGLPLA 397 (985)
Q Consensus 363 f~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLa 397 (985)
+.+++...... .+ +++..-|++++.+..-.
T Consensus 455 L~kka~~r~l~--l~---~eVi~yLa~r~~rnvR~ 484 (617)
T PRK14086 455 LRKKAVQEQLN--AP---PEVLEFIASRISRNIRE 484 (617)
T ss_pred HHHHHHhcCCC--CC---HHHHHHHHHhccCCHHH
Confidence 99887654332 11 35566677766655433
No 147
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.59 E-value=0.0016 Score=75.01 Aligned_cols=160 Identities=16% Similarity=0.167 Sum_probs=94.2
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCC--ceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh
Q 001995 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFN--EKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESI 292 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 292 (985)
....+.|+|..|+|||+|++.+++ .....++ .++++++. .+...+...+... ..+ .+.+.+
T Consensus 147 ~~~~l~l~G~~G~GKThL~~ai~~--~~~~~~~~~~v~yi~~~------~~~~~~~~~~~~~-----~~~----~~~~~~ 209 (450)
T PRK00149 147 AYNPLFIYGGVGLGKTHLLHAIGN--YILEKNPNAKVVYVTSE------KFTNDFVNALRNN-----TME----EFKEKY 209 (450)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEEEHH------HHHHHHHHHHHcC-----cHH----HHHHHH
Confidence 345689999999999999999998 4444432 35566543 3344444444221 122 233333
Q ss_pred cCceEEEEecCCCCCCccc--HHHHHhhhcC-CCCCcEEEEEcCchh---------hHHhhcCcccccccCCCCChHHHH
Q 001995 293 EGKKFFLVLDDVWTEEPQN--WEQLLGCLRC-GSKESRILVTTRNEK---------VAIAIGTTKFNIIPIELLSDEDCW 360 (985)
Q Consensus 293 ~~k~~LlVlDdv~~~~~~~--~~~l~~~l~~-~~~gs~ilvTtR~~~---------v~~~~~~~~~~~~~l~~L~~~e~~ 360 (985)
+ +.-+|||||+....... .+.+...+.. ...|..||+|+.... +...+... ..+++++.+.++-.
T Consensus 210 ~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g--l~v~i~~pd~~~r~ 286 (450)
T PRK00149 210 R-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWG--LTVDIEPPDLETRI 286 (450)
T ss_pred h-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCC--eeEEecCCCHHHHH
Confidence 3 34589999996432111 1233333321 123445888876532 12223222 47899999999999
Q ss_pred HHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHH
Q 001995 361 SIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVK 399 (985)
Q Consensus 361 ~Lf~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~ 399 (985)
.++++.+..... . --+++...|++.+.|..-.+.
T Consensus 287 ~il~~~~~~~~~--~---l~~e~l~~ia~~~~~~~R~l~ 320 (450)
T PRK00149 287 AILKKKAEEEGI--D---LPDEVLEFIAKNITSNVRELE 320 (450)
T ss_pred HHHHHHHHHcCC--C---CCHHHHHHHHcCcCCCHHHHH
Confidence 999998754321 1 123567888888888766443
No 148
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.57 E-value=0.0025 Score=64.87 Aligned_cols=175 Identities=20% Similarity=0.239 Sum_probs=101.9
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 258 (985)
+|+|.++-++++.=.+.... .. +..+.-|.++|++|.||||||.-+++ +....+. +......
T Consensus 27 efiGQ~~vk~~L~ifI~AAk----------~r--~e~lDHvLl~GPPGlGKTTLA~IIA~--Emgvn~k----~tsGp~l 88 (332)
T COG2255 27 EFIGQEKVKEQLQIFIKAAK----------KR--GEALDHVLLFGPPGLGKTTLAHIIAN--ELGVNLK----ITSGPAL 88 (332)
T ss_pred HhcChHHHHHHHHHHHHHHH----------hc--CCCcCeEEeeCCCCCcHHHHHHHHHH--HhcCCeE----ecccccc
Confidence 79999998888876665433 11 34567899999999999999999998 4433321 1111111
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCCCcccHHHHHhhhcCC--------CCCcE---
Q 001995 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTEEPQNWEQLLGCLRCG--------SKESR--- 327 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~--------~~gs~--- 327 (985)
....++...+. .|+ ..=+|++|.++......-+-+.+++.+. ++++|
T Consensus 89 --------------------eK~gDlaaiLt-~Le-~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ 146 (332)
T COG2255 89 --------------------EKPGDLAAILT-NLE-EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIR 146 (332)
T ss_pred --------------------cChhhHHHHHh-cCC-cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEe
Confidence 11122222221 122 2335566777654433333333333221 22333
Q ss_pred --------EEEEcCchhhHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHH
Q 001995 328 --------ILVTTRNEKVAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAV 398 (985)
Q Consensus 328 --------ilvTtR~~~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai 398 (985)
|=-|||.-.+...+...-..+.+++..+.+|-.+...+.+..-.. +-.++.+.+|+++..|-|--.
T Consensus 147 ldLppFTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i-----~i~~~~a~eIA~rSRGTPRIA 220 (332)
T COG2255 147 LDLPPFTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGI-----EIDEEAALEIARRSRGTPRIA 220 (332)
T ss_pred ccCCCeeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCC-----CCChHHHHHHHHhccCCcHHH
Confidence 446888655443332211146788999999999998887643222 222456899999999999643
No 149
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.57 E-value=0.0025 Score=72.74 Aligned_cols=159 Identities=16% Similarity=0.144 Sum_probs=93.4
Q ss_pred CEEEEEEccCCchHHHHHHHHhcchhhhccC-C-ceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc
Q 001995 216 PTIISITGMGGIGKTTLAKLIFNDNEVRNHF-N-EKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIE 293 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f-~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 293 (985)
..-+.|+|..|+|||+|++.+++ .....+ . .++|++. .++...+...+... ..+ .+++...
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~--~l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~-----~~~----~f~~~~~ 192 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYITS------EKFLNDLVDSMKEG-----KLN----EFREKYR 192 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHH--HHHHhCCCCeEEEEEH------HHHHHHHHHHHhcc-----cHH----HHHHHHH
Confidence 34599999999999999999998 343333 2 3566654 34566666555321 122 2333333
Q ss_pred CceEEEEecCCCCCC-cccH-HHHHhhhcC-CCCCcEEEEEcC-chhhH--------HhhcCcccccccCCCCChHHHHH
Q 001995 294 GKKFFLVLDDVWTEE-PQNW-EQLLGCLRC-GSKESRILVTTR-NEKVA--------IAIGTTKFNIIPIELLSDEDCWS 361 (985)
Q Consensus 294 ~k~~LlVlDdv~~~~-~~~~-~~l~~~l~~-~~~gs~ilvTtR-~~~v~--------~~~~~~~~~~~~l~~L~~~e~~~ 361 (985)
.+.-+|++||+.... ...+ +.+...+.. ...|..||+||. .+.-. ..+... ..+.+++.+.+.-.+
T Consensus 193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~g--l~v~i~~pd~e~r~~ 270 (440)
T PRK14088 193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMG--LVAKLEPPDEETRKK 270 (440)
T ss_pred hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcC--ceEeeCCCCHHHHHH
Confidence 445689999996421 1111 233333321 123446888885 32211 112222 477899999999999
Q ss_pred HHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHH
Q 001995 362 IFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAV 398 (985)
Q Consensus 362 Lf~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai 398 (985)
++++.+...... .+ +++...|++.+.|.--.+
T Consensus 271 IL~~~~~~~~~~--l~---~ev~~~Ia~~~~~~~R~L 302 (440)
T PRK14088 271 IARKMLEIEHGE--LP---EEVLNFVAENVDDNLRRL 302 (440)
T ss_pred HHHHHHHhcCCC--CC---HHHHHHHHhccccCHHHH
Confidence 998887543221 11 356777888887765444
No 150
>PRK08116 hypothetical protein; Validated
Probab=97.55 E-value=0.00035 Score=73.94 Aligned_cols=104 Identities=24% Similarity=0.304 Sum_probs=61.2
Q ss_pred EEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCce
Q 001995 217 TIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKK 296 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 296 (985)
..+.|+|..|+|||+||..+++. ....-..++++++ .+++..+........ .....+ +.+.+.+-.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~--l~~~~~~v~~~~~------~~ll~~i~~~~~~~~--~~~~~~----~~~~l~~~d 180 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANE--LIEKGVPVIFVNF------PQLLNRIKSTYKSSG--KEDENE----IIRSLVNAD 180 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEH------HHHHHHHHHHHhccc--cccHHH----HHHHhcCCC
Confidence 45899999999999999999994 3333344666653 345555554443211 112222 233344444
Q ss_pred EEEEecCCCCCCcccHHH--HHhhhcCC-CCCcEEEEEcCch
Q 001995 297 FFLVLDDVWTEEPQNWEQ--LLGCLRCG-SKESRILVTTRNE 335 (985)
Q Consensus 297 ~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~ilvTtR~~ 335 (985)
||||||+..+....|.. +...+... ..+..+||||...
T Consensus 181 -lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 181 -LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred -EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 89999996444445533 44433322 3455699999743
No 151
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.55 E-value=1.3e-05 Score=91.39 Aligned_cols=82 Identities=24% Similarity=0.312 Sum_probs=44.5
Q ss_pred hccCCcceeecCC--CCCCCCcccccCCCCCeEecCCCCCccccchhhcCCCCCcEeeccCcccccccchhhhhccccce
Q 001995 600 FDRLTCLRSIDGL--PVGQIPKGIKKLIHLRYLALGENPWIKELPEALCELCNLQTLDVSLCHYLKRLPERIGQLINLRH 677 (985)
Q Consensus 600 ~~~l~~Lr~L~l~--~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~ 677 (985)
+..++.|..|++. .+..+...+..+.+|++|++++|. |+.+.. +..|..|+.|++.+|. +..++ .+..+++|+.
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~~-l~~l~~L~~L~l~~N~-i~~~~-~~~~l~~L~~ 166 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNK-ITKLEG-LSTLTLLKELNLSGNL-ISDIS-GLESLKSLKL 166 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccc-cccccc-hhhccchhhheeccCc-chhcc-CCccchhhhc
Confidence 4455555555555 344444335556666666666665 555543 5555556666666665 44443 2444556666
Q ss_pred eecccccc
Q 001995 678 LMNSKEEW 685 (985)
Q Consensus 678 L~l~~~~~ 685 (985)
+++++|.+
T Consensus 167 l~l~~n~i 174 (414)
T KOG0531|consen 167 LDLSYNRI 174 (414)
T ss_pred ccCCcchh
Confidence 66654443
No 152
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.53 E-value=0.002 Score=73.34 Aligned_cols=154 Identities=14% Similarity=0.179 Sum_probs=87.0
Q ss_pred CEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCc
Q 001995 216 PTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEGK 295 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 295 (985)
..-+.|+|+.|+|||+|++.+++. ....-..+++++. ..+...+...+... . ...+++... .
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~--l~~~~~~v~yi~~------~~f~~~~~~~l~~~-----~----~~~f~~~~~-~ 202 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHA--LRESGGKILYVRS------ELFTEHLVSAIRSG-----E----MQRFRQFYR-N 202 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHH--HHHcCCCEEEeeH------HHHHHHHHHHHhcc-----h----HHHHHHHcc-c
Confidence 356899999999999999999984 3322234556643 34444555554321 1 122333333 3
Q ss_pred eEEEEecCCCCCCcccH--HHHHhhhcC-CCCCcEEEEEcCch-h--------hHHhhcCcccccccCCCCChHHHHHHH
Q 001995 296 KFFLVLDDVWTEEPQNW--EQLLGCLRC-GSKESRILVTTRNE-K--------VAIAIGTTKFNIIPIELLSDEDCWSIF 363 (985)
Q Consensus 296 ~~LlVlDdv~~~~~~~~--~~l~~~l~~-~~~gs~ilvTtR~~-~--------v~~~~~~~~~~~~~l~~L~~~e~~~Lf 363 (985)
.-+|++||+.......+ +.+...+.. ...|..||+||... . +...+... ..+++.+++.++-..++
T Consensus 203 ~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~G--l~~~l~~pd~e~r~~iL 280 (445)
T PRK12422 203 VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWG--IAIPLHPLTKEGLRSFL 280 (445)
T ss_pred CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCC--eEEecCCCCHHHHHHHH
Confidence 45888999864322212 233333221 12345788888542 1 12222222 57889999999999999
Q ss_pred HHHhcCCCCCcccchhHHHHHHHHHHhcCCC
Q 001995 364 SQLALSRRLDIEESENFENIGRQIVSKCKGL 394 (985)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~I~~~~~Gl 394 (985)
.+++-..+.. .+ .++..-|++.+.|.
T Consensus 281 ~~k~~~~~~~--l~---~evl~~la~~~~~d 306 (445)
T PRK12422 281 ERKAEALSIR--IE---ETALDFLIEALSSN 306 (445)
T ss_pred HHHHHHcCCC--CC---HHHHHHHHHhcCCC
Confidence 8877543321 11 23455566655543
No 153
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.52 E-value=0.00042 Score=85.68 Aligned_cols=157 Identities=20% Similarity=0.199 Sum_probs=86.1
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchh---hhccC-CceEEEEe
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNE---VRNHF-NEKIWVCV 254 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~---~~~~f-~~~~wv~~ 254 (985)
.++||+++++++++.|.... ..-+.++|++|+|||++|+.++.... +.... ...+|. +
T Consensus 180 ~~igr~~ei~~~~~~L~r~~-----------------~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l 241 (821)
T CHL00095 180 PVIGREKEIERVIQILGRRT-----------------KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L 241 (821)
T ss_pred CCCCcHHHHHHHHHHHcccc-----------------cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e
Confidence 58999999999999997432 23457999999999999999987321 11111 234443 1
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCC-------CcccHHH-HHhhhcCCCCCc
Q 001995 255 SEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTE-------EPQNWEQ-LLGCLRCGSKES 326 (985)
Q Consensus 255 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-------~~~~~~~-l~~~l~~~~~gs 326 (985)
+.. ..+.+......-.+.+...+.+.-..++.+|++|+++.- ....... +...+.. + .-
T Consensus 242 ----~~~-------~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~r-g-~l 308 (821)
T CHL00095 242 ----DIG-------LLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALAR-G-EL 308 (821)
T ss_pred ----eHH-------HHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhC-C-Cc
Confidence 111 112222222211222333333333456899999998421 0111222 3333322 2 23
Q ss_pred EEEEEcCchhhHHhhcC-----cccccccCCCCChHHHHHHHHHH
Q 001995 327 RILVTTRNEKVAIAIGT-----TKFNIIPIELLSDEDCWSIFSQL 366 (985)
Q Consensus 327 ~ilvTtR~~~v~~~~~~-----~~~~~~~l~~L~~~e~~~Lf~~~ 366 (985)
++|-+|........... ..+..+.+...+.++...+++..
T Consensus 309 ~~IgaTt~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 309 QCIGATTLDEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred EEEEeCCHHHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 56666665544322111 12356788889999988887653
No 154
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.51 E-value=0.00059 Score=64.84 Aligned_cols=88 Identities=19% Similarity=0.178 Sum_probs=47.8
Q ss_pred EEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCc-
Q 001995 217 TIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEGK- 295 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k- 295 (985)
..+.|+|++|+||||+|+.++.. .......++++..+........... ...................+.+..+..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARE--LGPPGGGVIYIDGEDILEEVLDQLL--LIIVGGKKASGSGELRLRLALALARKLK 78 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhc--cCCCCCCEEEECCEEccccCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHHhcC
Confidence 57999999999999999999984 3222234556655443322222211 111111111222222233333333333
Q ss_pred eEEEEecCCCCCC
Q 001995 296 KFFLVLDDVWTEE 308 (985)
Q Consensus 296 ~~LlVlDdv~~~~ 308 (985)
..++++|+++...
T Consensus 79 ~~viiiDei~~~~ 91 (148)
T smart00382 79 PDVLILDEITSLL 91 (148)
T ss_pred CCEEEEECCcccC
Confidence 4999999997644
No 155
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.50 E-value=0.0023 Score=69.05 Aligned_cols=97 Identities=11% Similarity=0.155 Sum_probs=66.7
Q ss_pred CceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEEEEEcCch-hhHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCC
Q 001995 294 GKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRILVTTRNE-KVAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRL 372 (985)
Q Consensus 294 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~ 372 (985)
+++-++|+|+++......-+.++..+.....++.+|++|... .+...+.. ....+.+.+++.+++.+.+.... .
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrS-RCq~i~~~~~~~~~~~~~L~~~~----~ 186 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRS-RCQRLEFKLPPAHEALAWLLAQG----V 186 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHh-hheEeeCCCcCHHHHHHHHHHcC----C
Confidence 566799999998777677778888888776777777777653 33222211 12578899999999998887531 1
Q ss_pred CcccchhHHHHHHHHHHhcCCChhHHHHHH
Q 001995 373 DIEESENFENIGRQIVSKCKGLPLAVKTLG 402 (985)
Q Consensus 373 ~~~~~~~~~~~~~~I~~~~~GlPLai~~~~ 402 (985)
. ...+..++..++|.|+....+.
T Consensus 187 --~-----~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 187 --S-----ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred --C-----hHHHHHHHHHcCCCHHHHHHHh
Confidence 1 1225678999999998665443
No 156
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.49 E-value=7.7e-05 Score=59.15 Aligned_cols=55 Identities=33% Similarity=0.454 Sum_probs=44.3
Q ss_pred cceeecCC--CCCCCC-cccccCCCCCeEecCCCCCccccch-hhcCCCCCcEeeccCcc
Q 001995 605 CLRSIDGL--PVGQIP-KGIKKLIHLRYLALGENPWIKELPE-ALCELCNLQTLDVSLCH 660 (985)
Q Consensus 605 ~Lr~L~l~--~~~~lp-~~i~~l~~Lr~L~L~~~~~i~~lp~-~i~~L~~L~~L~l~~~~ 660 (985)
+|++|+++ .+..+| ..+..+++|++|++++|. +..+|+ .+..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCCc
Confidence 45566665 456666 467889999999999998 888876 57899999999999986
No 157
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.46 E-value=0.0019 Score=70.81 Aligned_cols=162 Identities=11% Similarity=0.095 Sum_probs=92.4
Q ss_pred ceec-chhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCce--------
Q 001995 179 EIRG-RNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEK-------- 249 (985)
Q Consensus 179 ~~vG-r~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~-------- 249 (985)
.++| -+.-++.+...+..+. -.....++|+.|+||||+|+.+++.---.......
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~----------------l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c 69 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNR----------------LSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNC 69 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCC----------------CCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHH
Confidence 3566 6667777777776332 34677999999999999999986631000000000
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH----hcCceEEEEecCCCCCCcccHHHHHhhhcCCCCC
Q 001995 250 IWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRES----IEGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKE 325 (985)
Q Consensus 250 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~g 325 (985)
-.+.....+|...+ . ........+++.+.+... ..+.+=++|+|++........+.++..+.....+
T Consensus 70 ~~~~~~~hpD~~~i--------~-~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~ 140 (329)
T PRK08058 70 KRIDSGNHPDVHLV--------A-PDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGG 140 (329)
T ss_pred HHHhcCCCCCEEEe--------c-cccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCC
Confidence 00000001110000 0 000112233333322221 2355668999999877767778899988877777
Q ss_pred cEEEEEcCchh-hHHhhcCcccccccCCCCChHHHHHHHHHH
Q 001995 326 SRILVTTRNEK-VAIAIGTTKFNIIPIELLSDEDCWSIFSQL 366 (985)
Q Consensus 326 s~ilvTtR~~~-v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~ 366 (985)
+.+|++|.+.. +...... ....+++.+++.++..+.+.+.
T Consensus 141 ~~~Il~t~~~~~ll~TIrS-Rc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 141 TTAILLTENKHQILPTILS-RCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred ceEEEEeCChHhCcHHHHh-hceeeeCCCCCHHHHHHHHHHc
Confidence 77777776533 2222211 1268999999999998888653
No 158
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.45 E-value=0.00077 Score=81.25 Aligned_cols=156 Identities=20% Similarity=0.245 Sum_probs=85.7
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhcc-----CCceEEEE
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNH-----FNEKIWVC 253 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-----f~~~~wv~ 253 (985)
.++||+.++++++..|.... ..-+.++|++|+|||++|+.+++.. +... .++.+|..
T Consensus 187 ~liGR~~ei~~~i~iL~r~~-----------------~~n~LLvGppGvGKT~lae~la~~i-~~~~vP~~l~~~~~~~l 248 (758)
T PRK11034 187 PLIGREKELERAIQVLCRRR-----------------KNNPLLVGESGVGKTAIAEGLAWRI-VQGDVPEVMADCTIYSL 248 (758)
T ss_pred cCcCCCHHHHHHHHHHhccC-----------------CCCeEEECCCCCCHHHHHHHHHHHH-HhcCCCchhcCCeEEec
Confidence 58999999999999998532 1234689999999999999998731 1111 12344421
Q ss_pred eCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh-cCceEEEEecCCCCC--------CcccHHHHHhhhcCCCC
Q 001995 254 VSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESI-EGKKFFLVLDDVWTE--------EPQNWEQLLGCLRCGSK 324 (985)
Q Consensus 254 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~--------~~~~~~~l~~~l~~~~~ 324 (985)
+...+ +.+..... +.+.....+.+.+ +..+.+|++|++..- ...+...+...+...+
T Consensus 249 -----~~~~l-------laG~~~~G-e~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g- 314 (758)
T PRK11034 249 -----DIGSL-------LAGTKYRG-DFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG- 314 (758)
T ss_pred -----cHHHH-------hcccchhh-hHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCC-
Confidence 11111 11111111 1222222222222 356789999999531 1112222333332222
Q ss_pred CcEEEEEcCchhhHHhhcC-----cccccccCCCCChHHHHHHHHHH
Q 001995 325 ESRILVTTRNEKVAIAIGT-----TKFNIIPIELLSDEDCWSIFSQL 366 (985)
Q Consensus 325 gs~ilvTtR~~~v~~~~~~-----~~~~~~~l~~L~~~e~~~Lf~~~ 366 (985)
.-+||-+|...+....+.. ..+..+.+++.+.+++.++++..
T Consensus 315 ~i~vIgATt~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~ 361 (758)
T PRK11034 315 KIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGL 361 (758)
T ss_pred CeEEEecCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHH
Confidence 2355555555443221111 12367899999999999998864
No 159
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.42 E-value=4.7e-05 Score=79.19 Aligned_cols=256 Identities=21% Similarity=0.178 Sum_probs=132.5
Q ss_pred cccCCCCceEEEccCcCCcc-hhhhHHHhhccCCcceeecCCC------CCCCCcc-------cccCCCCCeEecCCCCC
Q 001995 572 MVYDETKLRSLVLDQRLSFK-PRIALSKLFDRLTCLRSIDGLP------VGQIPKG-------IKKLIHLRYLALGENPW 637 (985)
Q Consensus 572 ~~~~~~~Lr~L~l~~~~~~~-~~~~~~~~~~~l~~Lr~L~l~~------~~~lp~~-------i~~l~~Lr~L~L~~~~~ 637 (985)
....+..+..+.++++.... ....+.+.+.+.+.||.-+++. ..++|+. +-..++|++|+||.|-.
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 33456677888888875321 1233555677777888888771 2233433 33455788888887762
Q ss_pred ccc----cchhhcCCCCCcEeeccCcccccccc-hhhhhccccceeecccccccccccCCCcCCCCCCCCccCceEecCC
Q 001995 638 IKE----LPEALCELCNLQTLDVSLCHYLKRLP-ERIGQLINLRHLMNSKEEWSRLSYMPRGMERLTGLRTLGAFVASGG 712 (985)
Q Consensus 638 i~~----lp~~i~~L~~L~~L~l~~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~ 712 (985)
-.. +-.-|..+.+|+.|.|.+|- +...- ..++. -|.+|..+ +-++.-+.|+.+.+..+...
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~--al~~l~~~-----------kk~~~~~~Lrv~i~~rNrle 170 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGR--ALFELAVN-----------KKAASKPKLRVFICGRNRLE 170 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHH--HHHHHHHH-----------hccCCCcceEEEEeeccccc
Confidence 112 22335567777777777775 33221 11111 12222111 11223344555444333222
Q ss_pred Ccccc--cCCchhhhccccCcceeeecccccccCCCCcchhhhcccccccccccEEEEEcCCCCcchhHhhhcCCCCCCC
Q 001995 713 KSSKA--CSSLKSLNKLKHLEGSLTLRGLGNERDLGDDNDDEKVDLKSKMKLVDLHLRFDSTTKTKDHRVVLECLQPPSS 790 (985)
Q Consensus 713 ~~~~~--~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~ 790 (985)
..+.. ...++..+.|..+ .+.-+++..- -..+....+.-+++|+.|+|..|.... .-.......++..++
T Consensus 171 n~ga~~~A~~~~~~~~leev--r~~qN~I~~e-----G~~al~eal~~~~~LevLdl~DNtft~-egs~~LakaL~s~~~ 242 (382)
T KOG1909|consen 171 NGGATALAEAFQSHPTLEEV--RLSQNGIRPE-----GVTALAEALEHCPHLEVLDLRDNTFTL-EGSVALAKALSSWPH 242 (382)
T ss_pred cccHHHHHHHHHhccccceE--EEecccccCc-----hhHHHHHHHHhCCcceeeecccchhhh-HHHHHHHHHhcccch
Confidence 21100 0022333333333 1222222110 112444557778888888888664111 111223345666788
Q ss_pred CCeEEEeeccCCCCCC--CChhhh-ccccccEEeEeccCCCCc----C-CCCCCCCccceeeccCCC
Q 001995 791 LEKLGIYGYAGDTISP--TSDWML-SLAKLRVLTLRFCNECEC----L-PPLGKLPCLETLVLEGMS 849 (985)
Q Consensus 791 L~~L~l~~~~~~~~~~--~p~~~~-~l~~L~~L~L~~~~~~~~----l-~~l~~l~~L~~L~L~~~~ 849 (985)
|+.|++.+|....-.. +-..+. ..++|+.|.|.+|..-.. + -+....|.|+.|+|++|.
T Consensus 243 L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 243 LRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred heeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 9999999887544310 011111 578999999999853221 1 135568999999999975
No 160
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.40 E-value=0.0023 Score=70.40 Aligned_cols=139 Identities=18% Similarity=0.221 Sum_probs=86.9
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcC
Q 001995 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEG 294 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 294 (985)
....+.|+|..|.|||.|++++.+ ......+....+.++ .+.....++..+.. .-...+++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign--~~~~~~~~a~v~y~~----se~f~~~~v~a~~~---------~~~~~Fk~~y-- 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGN--EALANGPNARVVYLT----SEDFTNDFVKALRD---------NEMEKFKEKY-- 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHH--HHHhhCCCceEEecc----HHHHHHHHHHHHHh---------hhHHHHHHhh--
Confidence 467899999999999999999999 555555543333332 34455555555432 1233455544
Q ss_pred ceEEEEecCCCCCC-cccHH-HHHhhhcC-CCCCcEEEEEcCch---------hhHHhhcCcccccccCCCCChHHHHHH
Q 001995 295 KKFFLVLDDVWTEE-PQNWE-QLLGCLRC-GSKESRILVTTRNE---------KVAIAIGTTKFNIIPIELLSDEDCWSI 362 (985)
Q Consensus 295 k~~LlVlDdv~~~~-~~~~~-~l~~~l~~-~~~gs~ilvTtR~~---------~v~~~~~~~~~~~~~l~~L~~~e~~~L 362 (985)
.-=++++||++--. .+.|+ .+...+.. ...|-.||+|++.. .+...+... -++++.+.+.+....+
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~G--l~~~I~~Pd~e~r~ai 252 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWG--LVVEIEPPDDETRLAI 252 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhce--eEEeeCCCCHHHHHHH
Confidence 33488999996421 11232 23333331 12344899998653 334445555 6899999999999999
Q ss_pred HHHHhcCCCC
Q 001995 363 FSQLALSRRL 372 (985)
Q Consensus 363 f~~~~~~~~~ 372 (985)
+.+++.....
T Consensus 253 L~kka~~~~~ 262 (408)
T COG0593 253 LRKKAEDRGI 262 (408)
T ss_pred HHHHHHhcCC
Confidence 9987655443
No 161
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.39 E-value=0.00068 Score=73.13 Aligned_cols=163 Identities=10% Similarity=0.055 Sum_probs=96.1
Q ss_pred CEEEEEEccCCchHHHHHHHHhcchhhhc--------cCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHH
Q 001995 216 PTIISITGMGGIGKTTLAKLIFNDNEVRN--------HFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQ 287 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~--------~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 287 (985)
.....++|+.|+||+++|+.++..--=.. .-+.+-++..+.++|...+. .........+++.+
T Consensus 24 ~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~--------p~~~~~I~id~iR~- 94 (325)
T PRK06871 24 HHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILE--------PIDNKDIGVDQVRE- 94 (325)
T ss_pred ceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEc--------cccCCCCCHHHHHH-
Confidence 45788999999999999999876210000 00001111122222211110 00011223444332
Q ss_pred HHHHh-----cCceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEEEEEcCch-hhHHhhcCcccccccCCCCChHHHHH
Q 001995 288 LRESI-----EGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRILVTTRNE-KVAIAIGTTKFNIIPIELLSDEDCWS 361 (985)
Q Consensus 288 l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~~~~~~~~~~~~l~~L~~~e~~~ 361 (985)
+.+.+ .+++=++|+|+++.......+.++..+.....++.+|++|.+. .+...... ....+.+.+++.+++.+
T Consensus 95 l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~S-RC~~~~~~~~~~~~~~~ 173 (325)
T PRK06871 95 INEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYS-RCQTWLIHPPEEQQALD 173 (325)
T ss_pred HHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHh-hceEEeCCCCCHHHHHH
Confidence 22222 3566788999998877778888999998777777777777654 33322211 12588999999999998
Q ss_pred HHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHH
Q 001995 362 IFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAV 398 (985)
Q Consensus 362 Lf~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai 398 (985)
.+...... . ...+...++.++|.|+..
T Consensus 174 ~L~~~~~~------~----~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 174 WLQAQSSA------E----ISEILTALRINYGRPLLA 200 (325)
T ss_pred HHHHHhcc------C----hHHHHHHHHHcCCCHHHH
Confidence 88775321 1 112556788899999633
No 162
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.39 E-value=4.3e-05 Score=87.21 Aligned_cols=85 Identities=32% Similarity=0.404 Sum_probs=51.0
Q ss_pred cccccCCCCCeEecCCCCCccccchhhcCCCCCcEeeccCcccccccchhhhhccccceeecccccccccccCCCcCCCC
Q 001995 619 KGIKKLIHLRYLALGENPWIKELPEALCELCNLQTLDVSLCHYLKRLPERIGQLINLRHLMNSKEEWSRLSYMPRGMERL 698 (985)
Q Consensus 619 ~~i~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~l~~lp~~i~~l 698 (985)
..++.+.+|.+|++.+|. |..+...+..+.+|++|++++|. +..+. ++..|+.|+.|++.+|.+..+. ++..+
T Consensus 89 ~~l~~~~~l~~l~l~~n~-i~~i~~~l~~~~~L~~L~ls~N~-I~~i~-~l~~l~~L~~L~l~~N~i~~~~----~~~~l 161 (414)
T KOG0531|consen 89 NHLSKLKSLEALDLYDNK-IEKIENLLSSLVNLQVLDLSFNK-ITKLE-GLSTLTLLKELNLSGNLISDIS----GLESL 161 (414)
T ss_pred cccccccceeeeeccccc-hhhcccchhhhhcchheeccccc-ccccc-chhhccchhhheeccCcchhcc----CCccc
Confidence 345666667777777666 66665546667777777777766 55553 3566666777777665554332 33335
Q ss_pred CCCCccCceEec
Q 001995 699 TGLRTLGAFVAS 710 (985)
Q Consensus 699 ~~L~~L~~~~~~ 710 (985)
++|+.+++..+.
T Consensus 162 ~~L~~l~l~~n~ 173 (414)
T KOG0531|consen 162 KSLKLLDLSYNR 173 (414)
T ss_pred hhhhcccCCcch
Confidence 666666654443
No 163
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.38 E-value=0.0016 Score=63.31 Aligned_cols=120 Identities=19% Similarity=0.277 Sum_probs=74.4
Q ss_pred cchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhh------------------
Q 001995 182 GRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVR------------------ 243 (985)
Q Consensus 182 Gr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~------------------ 243 (985)
|-++..+.|.+.+..+. -...+.++|+.|+||+++|..+++.---.
T Consensus 1 gq~~~~~~L~~~~~~~~----------------l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~ 64 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGR----------------LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEE 64 (162)
T ss_dssp S-HHHHHHHHHHHHCTC------------------SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHT
T ss_pred CcHHHHHHHHHHHHcCC----------------cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHh
Confidence 44566677777776332 34578999999999999999987631111
Q ss_pred ccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh-----cCceEEEEecCCCCCCcccHHHHHhh
Q 001995 244 NHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESI-----EGKKFFLVLDDVWTEEPQNWEQLLGC 318 (985)
Q Consensus 244 ~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~ 318 (985)
...+...|+.-... ......+++. .+.+.+ .++.=++|+||++......+..++..
T Consensus 65 ~~~~d~~~~~~~~~------------------~~~i~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~ 125 (162)
T PF13177_consen 65 GNHPDFIIIKPDKK------------------KKSIKIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKT 125 (162)
T ss_dssp T-CTTEEEEETTTS------------------SSSBSHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHH
T ss_pred ccCcceEEEecccc------------------cchhhHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHH
Confidence 12333444432221 0012233333 222222 24566899999988888889999999
Q ss_pred hcCCCCCcEEEEEcCchh
Q 001995 319 LRCGSKESRILVTTRNEK 336 (985)
Q Consensus 319 l~~~~~gs~ilvTtR~~~ 336 (985)
+.....++++|++|.+..
T Consensus 126 LEepp~~~~fiL~t~~~~ 143 (162)
T PF13177_consen 126 LEEPPENTYFILITNNPS 143 (162)
T ss_dssp HHSTTTTEEEEEEES-GG
T ss_pred hcCCCCCEEEEEEECChH
Confidence 998888899998888765
No 164
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.38 E-value=0.00091 Score=75.24 Aligned_cols=167 Identities=17% Similarity=0.174 Sum_probs=89.0
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 258 (985)
++.|.+..+++|.+.+...-.. . ......+-....-|.|+|++|.|||++|+.+++ .....| +.+..+.
T Consensus 184 DIgGl~~qi~~l~e~v~lpl~~-p---~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~--el~~~f---i~V~~se-- 252 (438)
T PTZ00361 184 DIGGLEQQIQEIKEAVELPLTH-P---ELYDDIGIKPPKGVILYGPPGTGKTLLAKAVAN--ETSATF---LRVVGSE-- 252 (438)
T ss_pred HhcCHHHHHHHHHHHHHhhhhC-H---HHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHH--hhCCCE---EEEecch--
Confidence 6789999999998877522100 0 000000012345688999999999999999998 343333 2222111
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCCC-----------ccc---HHHHHhhhcC--C
Q 001995 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTEE-----------PQN---WEQLLGCLRC--G 322 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-----------~~~---~~~l~~~l~~--~ 322 (985)
+ .....+ .....+...+.....+.+.+|+||+++... ... ...+...+.. .
T Consensus 253 ----L----~~k~~G-----e~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~ 319 (438)
T PTZ00361 253 ----L----IQKYLG-----DGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDS 319 (438)
T ss_pred ----h----hhhhcc-----hHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcc
Confidence 1 111111 111122223333334678999999974210 000 1122222221 1
Q ss_pred CCCcEEEEEcCchhhHHh-hc-C-cccccccCCCCChHHHHHHHHHHhcC
Q 001995 323 SKESRILVTTRNEKVAIA-IG-T-TKFNIIPIELLSDEDCWSIFSQLALS 369 (985)
Q Consensus 323 ~~gs~ilvTtR~~~v~~~-~~-~-~~~~~~~l~~L~~~e~~~Lf~~~~~~ 369 (985)
..+.+||.||...+.... +- . .-...+++...+.++..++|..+...
T Consensus 320 ~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k 369 (438)
T PTZ00361 320 RGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSK 369 (438)
T ss_pred cCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 335678888876543322 21 1 11256889999999999999877643
No 165
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.38 E-value=0.003 Score=62.10 Aligned_cols=43 Identities=21% Similarity=0.266 Sum_probs=35.9
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhc
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
++||-++.++++.-... +++.+-+.|.||+|+||||-+..+++
T Consensus 28 dIVGNe~tv~rl~via~-----------------~gnmP~liisGpPG~GKTTsi~~LAr 70 (333)
T KOG0991|consen 28 DIVGNEDTVERLSVIAK-----------------EGNMPNLIISGPPGTGKTTSILCLAR 70 (333)
T ss_pred HhhCCHHHHHHHHHHHH-----------------cCCCCceEeeCCCCCchhhHHHHHHH
Confidence 79999999988876655 35677899999999999998877776
No 166
>PRK10536 hypothetical protein; Provisional
Probab=97.36 E-value=0.0034 Score=64.45 Aligned_cols=136 Identities=19% Similarity=0.204 Sum_probs=75.6
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEE--e--
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVC--V-- 254 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~--~-- 254 (985)
.+.+|......+..++.. ..+|.++|++|.|||+||..+..+.-..+.|+.++-.. +
T Consensus 56 ~i~p~n~~Q~~~l~al~~-------------------~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ 116 (262)
T PRK10536 56 PILARNEAQAHYLKAIES-------------------KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQA 116 (262)
T ss_pred cccCCCHHHHHHHHHHhc-------------------CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCc
Confidence 567899999999998862 23999999999999999999887532234454433321 1
Q ss_pred CC-----CCCHHHH----HHHHHHHhcCCCCCCCCHHHHHH--------HHHHHhcCceE---EEEecCCCCCCcccHHH
Q 001995 255 SE-----PFDDIRI----AKAILESLKGSATNAVESETVLK--------QLRESIEGKKF---FLVLDDVWTEEPQNWEQ 314 (985)
Q Consensus 255 ~~-----~~~~~~~----~~~i~~~l~~~~~~~~~~~~~~~--------~l~~~l~~k~~---LlVlDdv~~~~~~~~~~ 314 (985)
++ +-+..+- +..+...+..-- .....+.... .-..+++|+.+ +||+|.+.+.+.. .
T Consensus 117 ge~LGfLPG~~~eK~~p~~~pi~D~L~~~~-~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~---~ 192 (262)
T PRK10536 117 DEDLGFLPGDIAEKFAPYFRPVYDVLVRRL-GASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAA---Q 192 (262)
T ss_pred hhhhCcCCCCHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHH---H
Confidence 11 0011111 122222221100 0000111100 00135566654 9999999776543 3
Q ss_pred HHhhhcCCCCCcEEEEEcCchhh
Q 001995 315 LLGCLRCGSKESRILVTTRNEKV 337 (985)
Q Consensus 315 l~~~l~~~~~gs~ilvTtR~~~v 337 (985)
+...+...+.+|++|+|--..++
T Consensus 193 ~k~~ltR~g~~sk~v~~GD~~Qi 215 (262)
T PRK10536 193 MKMFLTRLGENVTVIVNGDITQC 215 (262)
T ss_pred HHHHHhhcCCCCEEEEeCChhhc
Confidence 44444555688999998765443
No 167
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.35 E-value=0.00025 Score=77.64 Aligned_cols=67 Identities=18% Similarity=0.176 Sum_probs=51.4
Q ss_pred CCCCCCCCCeEEEeeccCCCCCCCChhhhccccccEEeEeccCCCCcCCCCCCCCccceeeccCCCCceEeCCc
Q 001995 784 CLQPPSSLEKLGIYGYAGDTISPTSDWMLSLAKLRVLTLRFCNECECLPPLGKLPCLETLVLEGMSSVKRLGNG 857 (985)
Q Consensus 784 ~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~l~~~ 857 (985)
.+..+.++..|++++|....+ |. -..+|+.|++++|..+..+|..- .++|+.|.+.+|..+..+|..
T Consensus 47 r~~~~~~l~~L~Is~c~L~sL---P~---LP~sLtsL~Lsnc~nLtsLP~~L-P~nLe~L~Ls~Cs~L~sLP~s 113 (426)
T PRK15386 47 QIEEARASGRLYIKDCDIESL---PV---LPNELTEITIENCNNLTTLPGSI-PEGLEKLTVCHCPEISGLPES 113 (426)
T ss_pred HHHHhcCCCEEEeCCCCCccc---CC---CCCCCcEEEccCCCCcccCCchh-hhhhhheEccCcccccccccc
Confidence 355568999999999976666 62 24579999999998888777421 368999999999877766653
No 168
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.32 E-value=0.0081 Score=64.74 Aligned_cols=165 Identities=13% Similarity=0.096 Sum_probs=96.2
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhc-------cCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHH
Q 001995 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRN-------HFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQ 287 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-------~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 287 (985)
-...+.++|+.|+||+++|+.++..--=.. .....-++..+.++|...+.. .........+++..
T Consensus 24 l~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p-------~~~~~~I~vdqiR~- 95 (319)
T PRK06090 24 IPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKP-------EKEGKSITVEQIRQ- 95 (319)
T ss_pred cceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEec-------CcCCCcCCHHHHHH-
Confidence 346889999999999999999865210000 000001111111111110000 00011223444332
Q ss_pred HHHHh-----cCceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEEEEEcCch-hhHHhhcCcccccccCCCCChHHHHH
Q 001995 288 LRESI-----EGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRILVTTRNE-KVAIAIGTTKFNIIPIELLSDEDCWS 361 (985)
Q Consensus 288 l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~~~~~~~~~~~~l~~L~~~e~~~ 361 (985)
+.+.+ .++.=++|+|++........+.++..+.....++.+|++|.+. .+....... ...+.+.+++.+++.+
T Consensus 96 l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SR-Cq~~~~~~~~~~~~~~ 174 (319)
T PRK06090 96 CNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSR-CQQWVVTPPSTAQAMQ 174 (319)
T ss_pred HHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhc-ceeEeCCCCCHHHHHH
Confidence 22332 2455689999998877788889999998777777777666654 333322211 2688999999999999
Q ss_pred HHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHHHH
Q 001995 362 IFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVKTL 401 (985)
Q Consensus 362 Lf~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~ 401 (985)
.+.... . . .+..+++.++|.|+....+
T Consensus 175 ~L~~~~----~--~-------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 175 WLKGQG----I--T-------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred HHHHcC----C--c-------hHHHHHHHcCCCHHHHHHH
Confidence 886531 0 1 1346788999999966544
No 169
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.32 E-value=0.0016 Score=80.76 Aligned_cols=155 Identities=17% Similarity=0.211 Sum_probs=83.4
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccC------CceEE-
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHF------NEKIW- 251 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f------~~~~w- 251 (985)
.++||+.++.+++..|.... ..-+.++|++|+|||++|+.++.. +...+ ...+|
T Consensus 174 ~~igr~~ei~~~~~~l~r~~-----------------~~n~lL~G~pGvGKT~l~~~la~~--i~~~~~p~~l~~~~~~~ 234 (852)
T TIGR03346 174 PVIGRDEEIRRTIQVLSRRT-----------------KNNPVLIGEPGVGKTAIVEGLAQR--IVNGDVPESLKNKRLLA 234 (852)
T ss_pred cCCCcHHHHHHHHHHHhcCC-----------------CCceEEEcCCCCCHHHHHHHHHHH--HhccCCchhhcCCeEEE
Confidence 58999999999999997433 234568999999999999999873 32211 22233
Q ss_pred EEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc-CceEEEEecCCCCCC-----c--ccHHHHHhhhcCCC
Q 001995 252 VCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIE-GKKFFLVLDDVWTEE-----P--QNWEQLLGCLRCGS 323 (985)
Q Consensus 252 v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~-----~--~~~~~l~~~l~~~~ 323 (985)
+.++ .+ +.+......-...+...+.+.-+ +++.+|++|++..-. . .....++.+....+
T Consensus 235 l~~~------~l-------~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g 301 (852)
T TIGR03346 235 LDMG------AL-------IAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARG 301 (852)
T ss_pred eeHH------HH-------hhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcC
Confidence 2211 11 11111111111222222322222 468999999996321 0 01112222221212
Q ss_pred CCcEEEEEcCchhhHHhhcC-----cccccccCCCCChHHHHHHHHHH
Q 001995 324 KESRILVTTRNEKVAIAIGT-----TKFNIIPIELLSDEDCWSIFSQL 366 (985)
Q Consensus 324 ~gs~ilvTtR~~~v~~~~~~-----~~~~~~~l~~L~~~e~~~Lf~~~ 366 (985)
.-++|-+|........+.. ..+..+.+...+.++...++...
T Consensus 302 -~i~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~ 348 (852)
T TIGR03346 302 -ELHCIGATTLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGL 348 (852)
T ss_pred -ceEEEEeCcHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHH
Confidence 2355555554443221111 12356788889999999988765
No 170
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.29 E-value=0.0061 Score=66.60 Aligned_cols=165 Identities=12% Similarity=0.105 Sum_probs=96.8
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcch---hhh-----ccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHH
Q 001995 215 RPTIISITGMGGIGKTTLAKLIFNDN---EVR-----NHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLK 286 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~---~~~-----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 286 (985)
-..-..++|+.|+||+++|..++..- .-. +..+.+-++....++|...+.. .........+++.+
T Consensus 23 l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p-------~~~~~~I~idqiR~ 95 (334)
T PRK07993 23 GHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTP-------EKGKSSLGVDAVRE 95 (334)
T ss_pred cceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEec-------ccccccCCHHHHHH
Confidence 44678899999999999999876521 000 0001111222222222211100 00001233444433
Q ss_pred HHHHHh-----cCceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEEEEEcCchh-hHHhhcCcccccccCCCCChHHHH
Q 001995 287 QLRESI-----EGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRILVTTRNEK-VAIAIGTTKFNIIPIELLSDEDCW 360 (985)
Q Consensus 287 ~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~~~~~~~~~~~~~l~~L~~~e~~ 360 (985)
+.+.+ .+++=++|+|+++.......+.++..+.....++.+|++|.+.. +....... ...+.+.+++.+++.
T Consensus 96 -l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSR-Cq~~~~~~~~~~~~~ 173 (334)
T PRK07993 96 -VTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSR-CRLHYLAPPPEQYAL 173 (334)
T ss_pred -HHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhc-cccccCCCCCHHHHH
Confidence 22222 36677999999988777788889999987777777777776543 33322211 157899999999998
Q ss_pred HHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHH
Q 001995 361 SIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAV 398 (985)
Q Consensus 361 ~Lf~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai 398 (985)
+.+..... . . .+.+..++..++|.|...
T Consensus 174 ~~L~~~~~---~--~-----~~~a~~~~~la~G~~~~A 201 (334)
T PRK07993 174 TWLSREVT---M--S-----QDALLAALRLSAGAPGAA 201 (334)
T ss_pred HHHHHccC---C--C-----HHHHHHHHHHcCCCHHHH
Confidence 88865321 0 1 122667899999999644
No 171
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.28 E-value=0.0003 Score=51.08 Aligned_cols=37 Identities=35% Similarity=0.412 Sum_probs=31.1
Q ss_pred CCCcEeeccCcccccccchhhhhccccceeeccccccc
Q 001995 649 CNLQTLDVSLCHYLKRLPERIGQLINLRHLMNSKEEWS 686 (985)
Q Consensus 649 ~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~ 686 (985)
++|++|++++|. +..+|..+++|++|+.|++++|...
T Consensus 1 ~~L~~L~l~~N~-i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQ-ITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS--SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCC-CcccCchHhCCCCCCEEEecCCCCC
Confidence 479999999998 8899988999999999999976553
No 172
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.22 E-value=0.011 Score=67.88 Aligned_cols=205 Identities=16% Similarity=0.167 Sum_probs=124.4
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchh---hh---ccCCceEEE
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNE---VR---NHFNEKIWV 252 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~---~~---~~f~~~~wv 252 (985)
.+-+||.|..+|.+.+...-. + .+..+++.|.|.+|.|||..++.|.+.-+ .+ ..|+ .+.|
T Consensus 397 sLpcRe~E~~~I~~f~~~~i~----------~--~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveI 463 (767)
T KOG1514|consen 397 SLPCRENEFSEIEDFLRSFIS----------D--QGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEI 463 (767)
T ss_pred cccchhHHHHHHHHHHHhhcC----------C--CCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEE
Confidence 467899999999998875431 0 13445999999999999999999988422 11 2232 3455
Q ss_pred EeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc-----CceEEEEecCCCCCCcccHHHHHhhhcCC-CCCc
Q 001995 253 CVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIE-----GKKFFLVLDDVWTEEPQNWEQLLGCLRCG-SKES 326 (985)
Q Consensus 253 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-----~k~~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs 326 (985)
+.-.-..+.+++..|..++.+... ......+.+..++. .++++|++|+++..-...-+-+...+.|. .++|
T Consensus 464 Ngm~l~~~~~~Y~~I~~~lsg~~~---~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~s 540 (767)
T KOG1514|consen 464 NGLRLASPREIYEKIWEALSGERV---TWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNS 540 (767)
T ss_pred cceeecCHHHHHHHHHHhcccCcc---cHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCC
Confidence 655666799999999999987532 23344445555553 46789999988432112233355555543 4677
Q ss_pred EEEEEcCch-----------hhHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCCh
Q 001995 327 RILVTTRNE-----------KVAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLP 395 (985)
Q Consensus 327 ~ilvTtR~~-----------~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlP 395 (985)
|++|-+=.. .++..++. ..+..+|.+.++-.++...+..+... -.....+-++++|+.-.|-.-
T Consensus 541 KLvvi~IaNTmdlPEr~l~nrvsSRlg~---tRi~F~pYth~qLq~Ii~~RL~~~~~--f~~~aielvarkVAavSGDaR 615 (767)
T KOG1514|consen 541 KLVVIAIANTMDLPERLLMNRVSSRLGL---TRICFQPYTHEQLQEIISARLKGLDA--FENKAIELVARKVAAVSGDAR 615 (767)
T ss_pred ceEEEEecccccCHHHHhccchhhhccc---eeeecCCCCHHHHHHHHHHhhcchhh--cchhHHHHHHHHHHhccccHH
Confidence 766554321 12222222 35677788888877777666544311 223344445566665555555
Q ss_pred hHHHHHHhh
Q 001995 396 LAVKTLGSL 404 (985)
Q Consensus 396 Lai~~~~~~ 404 (985)
.|+.+.-+.
T Consensus 616 raldic~RA 624 (767)
T KOG1514|consen 616 RALDICRRA 624 (767)
T ss_pred HHHHHHHHH
Confidence 555544433
No 173
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.19 E-value=0.0065 Score=61.60 Aligned_cols=122 Identities=20% Similarity=0.265 Sum_probs=71.5
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 258 (985)
+++|.|..++.|++-...-- . +....-|.++|..|.|||++++.+.+...-++ .+ -|.+..
T Consensus 28 ~L~Gie~Qk~~l~~Nt~~Fl----------~---G~pannvLL~G~rGtGKSSlVkall~~y~~~G---LR-lIev~k-- 88 (249)
T PF05673_consen 28 DLIGIERQKEALIENTEQFL----------Q---GLPANNVLLWGARGTGKSSLVKALLNEYADQG---LR-LIEVSK-- 88 (249)
T ss_pred HhcCHHHHHHHHHHHHHHHH----------c---CCCCcceEEecCCCCCHHHHHHHHHHHHhhcC---ce-EEEECH--
Confidence 79999999988876433211 0 12345678899999999999999988321111 11 122221
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCC-CCcccHHHHHhhhcCC----CCCcEEEEEcC
Q 001995 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWT-EEPQNWEQLLGCLRCG----SKESRILVTTR 333 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~----~~gs~ilvTtR 333 (985)
.+-.+...+.+.++. ...||+|++||+.= .....+..+...+..+ .....|..||-
T Consensus 89 -----------------~~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSN 149 (249)
T PF05673_consen 89 -----------------EDLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSN 149 (249)
T ss_pred -----------------HHhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecc
Confidence 122334444444442 35799999999852 3334566666666532 23445556665
Q ss_pred chhhH
Q 001995 334 NEKVA 338 (985)
Q Consensus 334 ~~~v~ 338 (985)
.++..
T Consensus 150 RRHLv 154 (249)
T PF05673_consen 150 RRHLV 154 (249)
T ss_pred hhhcc
Confidence 55543
No 174
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.18 E-value=0.0023 Score=79.07 Aligned_cols=155 Identities=17% Similarity=0.190 Sum_probs=83.1
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccC------Cce-EE
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHF------NEK-IW 251 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f------~~~-~w 251 (985)
.++||+.++.+++..|.... ..-+.++|.+|+|||++|+.++.. +.... ... ++
T Consensus 179 ~vigr~~ei~~~i~iL~r~~-----------------~~n~lL~G~pGvGKT~l~~~la~~--i~~~~vp~~l~~~~~~~ 239 (857)
T PRK10865 179 PVIGRDEEIRRTIQVLQRRT-----------------KNNPVLIGEPGVGKTAIVEGLAQR--IINGEVPEGLKGRRVLA 239 (857)
T ss_pred cCCCCHHHHHHHHHHHhcCC-----------------cCceEEECCCCCCHHHHHHHHHHH--hhcCCCchhhCCCEEEE
Confidence 58999999999999997433 235669999999999999999873 32111 122 23
Q ss_pred EEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh-cCceEEEEecCCCCCC-------cccHHH-HHhhhcCC
Q 001995 252 VCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESI-EGKKFFLVLDDVWTEE-------PQNWEQ-LLGCLRCG 322 (985)
Q Consensus 252 v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~-------~~~~~~-l~~~l~~~ 322 (985)
+.++. + +.+......-.+.+...+.+.- .+++.+|++|+++.-. ...... +.+.+..
T Consensus 240 l~l~~------l-------~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~- 305 (857)
T PRK10865 240 LDMGA------L-------VAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR- 305 (857)
T ss_pred Eehhh------h-------hhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhc-
Confidence 32221 1 0111111111122222333222 2578999999985321 001122 3222222
Q ss_pred CCCcEEEEEcCchhhHHhhcC-----cccccccCCCCChHHHHHHHHHHh
Q 001995 323 SKESRILVTTRNEKVAIAIGT-----TKFNIIPIELLSDEDCWSIFSQLA 367 (985)
Q Consensus 323 ~~gs~ilvTtR~~~v~~~~~~-----~~~~~~~l~~L~~~e~~~Lf~~~~ 367 (985)
+ .-++|-+|-.......+.. ..+..+.+..-+.++...+++...
T Consensus 306 g-~l~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 306 G-ELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred C-CCeEEEcCCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 1 3356666655543221110 112356666668888888876543
No 175
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.16 E-value=0.003 Score=74.27 Aligned_cols=49 Identities=24% Similarity=0.316 Sum_probs=39.5
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcc
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFND 239 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 239 (985)
+++|-+..++++..++....- +.....++.|+|++|.||||+++.++..
T Consensus 85 el~~~~~ki~~l~~~l~~~~~------------~~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 85 ELAVHKKKIEEVETWLKAQVL------------ENAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred HhcCcHHHHHHHHHHHHhccc------------ccCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 799999999999999875430 0123468999999999999999999873
No 176
>PRK08181 transposase; Validated
Probab=97.16 E-value=0.0012 Score=69.50 Aligned_cols=101 Identities=18% Similarity=0.186 Sum_probs=57.4
Q ss_pred EEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCce
Q 001995 217 TIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKK 296 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 296 (985)
.-+.|+|++|+|||.||..+.+. .......++|+++ .+++..+.... .....+.... .+ .+.
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~--a~~~g~~v~f~~~------~~L~~~l~~a~-----~~~~~~~~l~----~l-~~~ 168 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLA--LIENGWRVLFTRT------TDLVQKLQVAR-----RELQLESAIA----KL-DKF 168 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHH--HHHcCCceeeeeH------HHHHHHHHHHH-----hCCcHHHHHH----HH-hcC
Confidence 35999999999999999999883 3333345666653 34444443321 1112222222 22 234
Q ss_pred EEEEecCCCCCCcccHH--HHHhhhcCCCCCcEEEEEcCch
Q 001995 297 FFLVLDDVWTEEPQNWE--QLLGCLRCGSKESRILVTTRNE 335 (985)
Q Consensus 297 ~LlVlDdv~~~~~~~~~--~l~~~l~~~~~gs~ilvTtR~~ 335 (985)
=||||||+.......|. .+...+.....+..+||||...
T Consensus 169 dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 169 DLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 59999999644333332 3444444221123589998754
No 177
>PRK12377 putative replication protein; Provisional
Probab=97.13 E-value=0.00095 Score=69.28 Aligned_cols=102 Identities=24% Similarity=0.190 Sum_probs=58.7
Q ss_pred CEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCc
Q 001995 216 PTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEGK 295 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 295 (985)
...+.|+|..|+|||+||..+++. .......++++++. +++..+-..... ....... .+.+ .+
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~--l~~~g~~v~~i~~~------~l~~~l~~~~~~----~~~~~~~----l~~l-~~ 163 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNR--LLAKGRSVIVVTVP------DVMSRLHESYDN----GQSGEKF----LQEL-CK 163 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEEEHH------HHHHHHHHHHhc----cchHHHH----HHHh-cC
Confidence 357999999999999999999994 44444456777553 344444433311 1111222 2222 45
Q ss_pred eEEEEecCCCCCCcccHHH--HHhhhcCC-CCCcEEEEEcCc
Q 001995 296 KFFLVLDDVWTEEPQNWEQ--LLGCLRCG-SKESRILVTTRN 334 (985)
Q Consensus 296 ~~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~ilvTtR~ 334 (985)
-=||||||+.......|.. +...+... .+.--+||||-.
T Consensus 164 ~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 164 VDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred CCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 6799999995544344543 44444322 122237888764
No 178
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.12 E-value=0.015 Score=63.35 Aligned_cols=94 Identities=16% Similarity=0.215 Sum_probs=64.7
Q ss_pred CceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEEEEEcCc-hhhHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCC
Q 001995 294 GKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRILVTTRN-EKVAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRL 372 (985)
Q Consensus 294 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~ 372 (985)
+++=++|+|+++......++.++..+.....++.+|++|.+ ..+...+.. ....+.+.+++.++..+.+.... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~S-Rcq~i~~~~~~~~~~~~~L~~~~----~ 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILS-RCRQFPMTVPAPEAAAAWLAAQG----V 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHh-cCEEEEecCCCHHHHHHHHHHcC----C
Confidence 45668899999888888899999999877777766665555 433332221 12588999999999999887641 1
Q ss_pred CcccchhHHHHHHHHHHhcCCChhHHHHH
Q 001995 373 DIEESENFENIGRQIVSKCKGLPLAVKTL 401 (985)
Q Consensus 373 ~~~~~~~~~~~~~~I~~~~~GlPLai~~~ 401 (985)
.. ...++..++|.|.....+
T Consensus 206 --~~-------~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 206 --AD-------ADALLAEAGGAPLAALAL 225 (342)
T ss_pred --Ch-------HHHHHHHcCCCHHHHHHH
Confidence 11 223577889999755433
No 179
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.12 E-value=0.016 Score=71.53 Aligned_cols=165 Identities=15% Similarity=0.229 Sum_probs=84.9
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 258 (985)
+++|.++.+++|.+++.... . .+.....++.++|++|+|||++|+.+++ .....| +-++++...
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~----------~-~~~~~~~~lll~GppG~GKT~lAk~iA~--~l~~~~---~~i~~~~~~ 384 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQK----------L-RGKMKGPILCLVGPPGVGKTSLGKSIAK--ALNRKF---VRFSLGGVR 384 (775)
T ss_pred hcCChHHHHHHHHHHHHHHH----------h-hcCCCCceEEEECCCCCCHHHHHHHHHH--HhcCCe---EEEeCCCcc
Confidence 58899999999988775321 0 0012335899999999999999999998 333333 122333322
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCCCc----ccHHHHHhhhcC--------C----
Q 001995 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTEEP----QNWEQLLGCLRC--------G---- 322 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----~~~~~l~~~l~~--------~---- 322 (985)
+..++.. . ...........+...+...- .++-+++||.++.... +....+...+.. .
T Consensus 385 ~~~~i~g----~--~~~~~g~~~g~i~~~l~~~~-~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~ 457 (775)
T TIGR00763 385 DEAEIRG----H--RRTYVGAMPGRIIQGLKKAK-TKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDV 457 (775)
T ss_pred cHHHHcC----C--CCceeCCCCchHHHHHHHhC-cCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCc
Confidence 2222110 0 00111111223333444332 2334789999854321 112233333321 0
Q ss_pred ---CCCcEEEEEcCchh-hHHhhcCcccccccCCCCChHHHHHHHHHHh
Q 001995 323 ---SKESRILVTTRNEK-VAIAIGTTKFNIIPIELLSDEDCWSIFSQLA 367 (985)
Q Consensus 323 ---~~gs~ilvTtR~~~-v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 367 (985)
..+.-+|.||.... +...+-. ....+++.+++.++-.++++++.
T Consensus 458 ~~d~s~v~~I~TtN~~~~i~~~L~~-R~~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 458 PFDLSKVIFIATANSIDTIPRPLLD-RMEVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred eeccCCEEEEEecCCchhCCHHHhC-CeeEEecCCCCHHHHHHHHHHHH
Confidence 01233444554322 1111111 12578899999888888776654
No 180
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.11 E-value=0.0018 Score=70.42 Aligned_cols=150 Identities=16% Similarity=0.153 Sum_probs=78.7
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchh----hhc-----cCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHH
Q 001995 215 RPTIISITGMGGIGKTTLAKLIFNDNE----VRN-----HFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVL 285 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~----~~~-----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 285 (985)
-..-+.++|+.|+||||+|+.++..-. ..+ .-+.+-++....++|...+...=.+.-.+........+++.
T Consensus 20 ~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~iR 99 (325)
T PRK08699 20 RPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAVR 99 (325)
T ss_pred cceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHHH
Confidence 445788999999999999999876310 000 00001111112222211110000000000000112344443
Q ss_pred HHHHHHh-----cCceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEEEEEcCchh-hHHhhcCcccccccCCCCChHHH
Q 001995 286 KQLRESI-----EGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRILVTTRNEK-VAIAIGTTKFNIIPIELLSDEDC 359 (985)
Q Consensus 286 ~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~~~~~~~~~~~~~l~~L~~~e~ 359 (985)
+ +.+.+ .+++-++|+|++...+...-..+...+.....+..+|++|.+.. +...+.. ....+.+.+++.+++
T Consensus 100 ~-l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~S-Rc~~~~~~~~~~~~~ 177 (325)
T PRK08699 100 E-IIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKS-RCRKMVLPAPSHEEA 177 (325)
T ss_pred H-HHHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHH-HhhhhcCCCCCHHHH
Confidence 3 22322 24444556798877776677778877775555566777777654 3322221 126889999999999
Q ss_pred HHHHHHH
Q 001995 360 WSIFSQL 366 (985)
Q Consensus 360 ~~Lf~~~ 366 (985)
.+.+...
T Consensus 178 ~~~L~~~ 184 (325)
T PRK08699 178 LAYLRER 184 (325)
T ss_pred HHHHHhc
Confidence 8888653
No 181
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.11 E-value=0.013 Score=62.23 Aligned_cols=108 Identities=19% Similarity=0.246 Sum_probs=58.7
Q ss_pred EEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHH------------HHhcCCC---CCCCCHH
Q 001995 218 IISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAIL------------ESLKGSA---TNAVESE 282 (985)
Q Consensus 218 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~------------~~l~~~~---~~~~~~~ 282 (985)
-|.|.|++|+|||++|+.++. .... ..+.+++....+..+++.... ....... .......
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~--~lg~---~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 97 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVAR--KRDR---PVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDN 97 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHH--HhCC---CEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCc
Confidence 567899999999999999986 2221 234566665555544432211 0000000 0000001
Q ss_pred HHHHHHHHHhcCceEEEEecCCCCCCcccHHHHHhhhcCC----------------CCCcEEEEEcCch
Q 001995 283 TVLKQLRESIEGKKFFLVLDDVWTEEPQNWEQLLGCLRCG----------------SKESRILVTTRNE 335 (985)
Q Consensus 283 ~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~----------------~~gs~ilvTtR~~ 335 (985)
. +.... .+...|++|++.....+.+..|...+..+ .++.+||+|+-..
T Consensus 98 ~----l~~A~-~~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~ 161 (262)
T TIGR02640 98 R----LTLAV-REGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPV 161 (262)
T ss_pred h----HHHHH-HcCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCc
Confidence 1 11111 23468999999876666666677666421 1245788887643
No 182
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.08 E-value=0.0066 Score=75.15 Aligned_cols=140 Identities=21% Similarity=0.263 Sum_probs=78.0
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 258 (985)
.++|.+..++.|...+.....+ ...++....++.++|+.|+|||++|+.+++. .-..-...+.++++.-.
T Consensus 569 ~viGQ~~ai~~l~~~i~~~~~g--------l~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~--l~~~~~~~i~id~se~~ 638 (857)
T PRK10865 569 RVIGQNEAVEAVSNAIRRSRAG--------LSDPNRPIGSFLFLGPTGVGKTELCKALANF--MFDSDDAMVRIDMSEFM 638 (857)
T ss_pred eEeCCHHHHHHHHHHHHHHHhc--------ccCCCCCCceEEEECCCCCCHHHHHHHHHHH--hhcCCCcEEEEEhHHhh
Confidence 6899999999998888743200 0001223357899999999999999999862 21111223444443311
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcC-ceEEEEecCCCCCCcccHHHHHhhhcCCC-----------CCc
Q 001995 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESIEG-KKFFLVLDDVWTEEPQNWEQLLGCLRCGS-----------KES 326 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs 326 (985)
. . .....+-+.++.....+. ...+.+.++. ..-+|+||++.......+..+...+..+. ..+
T Consensus 639 ~-~----~~~~~LiG~~pgy~g~~~-~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~ 712 (857)
T PRK10865 639 E-K----HSVSRLVGAPPGYVGYEE-GGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNT 712 (857)
T ss_pred h-h----hhHHHHhCCCCcccccch-hHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeeccc
Confidence 1 1 112223232222111111 1122333322 33699999998777777888887775431 122
Q ss_pred EEEEEcCc
Q 001995 327 RILVTTRN 334 (985)
Q Consensus 327 ~ilvTtR~ 334 (985)
-||+||..
T Consensus 713 iiI~TSN~ 720 (857)
T PRK10865 713 VVIMTSNL 720 (857)
T ss_pred EEEEeCCc
Confidence 37778775
No 183
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.07 E-value=0.0042 Score=69.48 Aligned_cols=187 Identities=18% Similarity=0.209 Sum_probs=96.1
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 258 (985)
++.|.+..+++|.+.+...-.. +... ...+-..++-|.++|++|.|||++|+.+++. ....| +.+..+
T Consensus 146 digGl~~~k~~l~~~v~~pl~~--~~~~--~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~--l~~~f---i~i~~s--- 213 (398)
T PTZ00454 146 DIGGLDIQKQEIREAVELPLTC--PELY--EQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH--TTATF---IRVVGS--- 213 (398)
T ss_pred HcCCHHHHHHHHHHHHHHHhcC--HHHH--HhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE---EEEehH---
Confidence 6889999998888776421100 0000 0000134567999999999999999999983 32222 222111
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCCC----------ccc----HHHHHhhhcC--C
Q 001995 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTEE----------PQN----WEQLLGCLRC--G 322 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------~~~----~~~l~~~l~~--~ 322 (985)
. +.....+ .....+...+.......+.+|+||+++... ... +..+...+.. .
T Consensus 214 ---~----l~~k~~g-----e~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~ 281 (398)
T PTZ00454 214 ---E----FVQKYLG-----EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQ 281 (398)
T ss_pred ---H----HHHHhcc-----hhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCC
Confidence 1 1111111 111222233333335678999999975310 011 1222222221 2
Q ss_pred CCCcEEEEEcCchhhH-Hhh-cC-cccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCCh
Q 001995 323 SKESRILVTTRNEKVA-IAI-GT-TKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLP 395 (985)
Q Consensus 323 ~~gs~ilvTtR~~~v~-~~~-~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlP 395 (985)
..+..||.||...+.. ..+ .. .-...+.+...+.++..++|+.+...... ....+ ..++++.+.|+-
T Consensus 282 ~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l--~~dvd----~~~la~~t~g~s 351 (398)
T PTZ00454 282 TTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNL--SEEVD----LEDFVSRPEKIS 351 (398)
T ss_pred CCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCC--CcccC----HHHHHHHcCCCC
Confidence 3456788888765432 221 11 11145788888888888888766533221 11222 345566666553
No 184
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.07 E-value=0.011 Score=67.83 Aligned_cols=174 Identities=18% Similarity=0.212 Sum_probs=89.1
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhcc-----CCceEEEE
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNH-----FNEKIWVC 253 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-----f~~~~wv~ 253 (985)
++.|.+..+++|.+.+...-. ++.... . .+-..++-+.++|++|.|||++|+.+++. .... +....|+.
T Consensus 183 dIgGl~~~i~~i~~~v~lp~~-~~~l~~--~-~gl~~p~GILLyGPPGTGKT~LAKAlA~e--L~~~i~~~~~~~~~fl~ 256 (512)
T TIGR03689 183 DIGGLDSQIEQIRDAVELPFL-HPELYR--E-YDLKPPKGVLLYGPPGCGKTLIAKAVANS--LAQRIGAETGDKSYFLN 256 (512)
T ss_pred HcCChHHHHHHHHHHHHHHhh-CHHHHH--h-ccCCCCcceEEECCCCCcHHHHHHHHHHh--hccccccccCCceeEEe
Confidence 678899999999887642110 000000 0 00123456899999999999999999984 3222 12344554
Q ss_pred eCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH-hcCceEEEEecCCCCCC-------ccc-----HHHHHhhhc
Q 001995 254 VSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRES-IEGKKFFLVLDDVWTEE-------PQN-----WEQLLGCLR 320 (985)
Q Consensus 254 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~-------~~~-----~~~l~~~l~ 320 (985)
+... .++....+. .......+....++. -.+++++|+||+++..- ... ...+...+.
T Consensus 257 v~~~--------eLl~kyvGe--te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LD 326 (512)
T TIGR03689 257 IKGP--------ELLNKYVGE--TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELD 326 (512)
T ss_pred ccch--------hhcccccch--HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhc
Confidence 4321 111111000 000011112222221 13579999999996310 011 123333333
Q ss_pred CC--CCCcEEEEEcCchhh-HHhhc-Ccc-cccccCCCCChHHHHHHHHHHhc
Q 001995 321 CG--SKESRILVTTRNEKV-AIAIG-TTK-FNIIPIELLSDEDCWSIFSQLAL 368 (985)
Q Consensus 321 ~~--~~gs~ilvTtR~~~v-~~~~~-~~~-~~~~~l~~L~~~e~~~Lf~~~~~ 368 (985)
.. ..+..||.||-.... ...+- ... ...++++..+.++..++|+++..
T Consensus 327 gl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~ 379 (512)
T TIGR03689 327 GVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLT 379 (512)
T ss_pred ccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhh
Confidence 11 234455666654432 21221 111 14589999999999999998763
No 185
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.07 E-value=0.0066 Score=74.29 Aligned_cols=125 Identities=21% Similarity=0.252 Sum_probs=71.8
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 258 (985)
.++|-+..++.|...+....-+ -..+.....++.++|+.|+|||+||+.++. .. +...+.++.++-.
T Consensus 455 ~v~GQ~~ai~~l~~~i~~~~~g--------~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~--~l---~~~~~~~d~se~~ 521 (731)
T TIGR02639 455 KIFGQDEAIDSLVSSIKRSRAG--------LGNPNKPVGSFLFTGPTGVGKTELAKQLAE--AL---GVHLERFDMSEYM 521 (731)
T ss_pred ceeCcHHHHHHHHHHHHHHhcC--------CCCCCCCceeEEEECCCCccHHHHHHHHHH--Hh---cCCeEEEeCchhh
Confidence 5889999999988888743200 000122345789999999999999999987 22 2234555554422
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcC-ceEEEEecCCCCCCcccHHHHHhhhcCC
Q 001995 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESIEG-KKFFLVLDDVWTEEPQNWEQLLGCLRCG 322 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~~~~~~~~~l~~~l~~~ 322 (985)
+.. .+...+ +.+......++ ...+.+.++. ..-+|+||+++....+.++.+...+..+
T Consensus 522 ~~~----~~~~li-g~~~gyvg~~~-~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~g 580 (731)
T TIGR02639 522 EKH----TVSRLI-GAPPGYVGFEQ-GGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYA 580 (731)
T ss_pred hcc----cHHHHh-cCCCCCcccch-hhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhccC
Confidence 111 111112 22211111111 1123333333 3459999999877777788888777643
No 186
>PRK06921 hypothetical protein; Provisional
Probab=97.06 E-value=0.0029 Score=66.89 Aligned_cols=99 Identities=17% Similarity=0.275 Sum_probs=55.9
Q ss_pred CEEEEEEccCCchHHHHHHHHhcchhhhcc-CCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcC
Q 001995 216 PTIISITGMGGIGKTTLAKLIFNDNEVRNH-FNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEG 294 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 294 (985)
...+.++|..|+|||+||..+++. .... -..+++++.. +++..+.... +.....+ +.+ .
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~--l~~~~g~~v~y~~~~------~l~~~l~~~~----------~~~~~~~-~~~-~ 176 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANE--LMRKKGVPVLYFPFV------EGFGDLKDDF----------DLLEAKL-NRM-K 176 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HhhhcCceEEEEEHH------HHHHHHHHHH----------HHHHHHH-HHh-c
Confidence 467999999999999999999984 3333 3456777642 2333332221 1111122 222 2
Q ss_pred ceEEEEecCCC-----CCCcccHHH--HHhhhcCC-CCCcEEEEEcCc
Q 001995 295 KKFFLVLDDVW-----TEEPQNWEQ--LLGCLRCG-SKESRILVTTRN 334 (985)
Q Consensus 295 k~~LlVlDdv~-----~~~~~~~~~--l~~~l~~~-~~gs~ilvTtR~ 334 (985)
+-=||||||+. .+....|.. +...+... ..+..+||||..
T Consensus 177 ~~dlLiIDDl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~tIitsn~ 224 (266)
T PRK06921 177 KVEVLFIDDLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKPILISSEL 224 (266)
T ss_pred CCCEEEEeccccccCCCccCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 45699999993 222334543 44444322 123458888864
No 187
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.04 E-value=0.00045 Score=68.24 Aligned_cols=101 Identities=22% Similarity=0.308 Sum_probs=52.2
Q ss_pred CEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCc
Q 001995 216 PTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEGK 295 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 295 (985)
..-+.|+|..|+|||.||..+.+. ....=..+.|+++ .+++..+ .... ......... +.+. +
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~--~~~~g~~v~f~~~------~~L~~~l----~~~~-~~~~~~~~~----~~l~-~ 108 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANE--AIRKGYSVLFITA------SDLLDEL----KQSR-SDGSYEELL----KRLK-R 108 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHH--HHHTT--EEEEEH------HHHHHHH----HCCH-CCTTHCHHH----HHHH-T
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHH--hccCCcceeEeec------Cceeccc----cccc-cccchhhhc----Cccc-c
Confidence 356999999999999999999984 3222234667754 3343333 3221 111222222 2233 3
Q ss_pred eEEEEecCCCCCCcccHHH--HHhhhcCC-CCCcEEEEEcCch
Q 001995 296 KFFLVLDDVWTEEPQNWEQ--LLGCLRCG-SKESRILVTTRNE 335 (985)
Q Consensus 296 ~~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~ilvTtR~~ 335 (985)
-=||||||+.......|.. +...+... .++ .+||||...
T Consensus 109 ~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~-~tIiTSN~~ 150 (178)
T PF01695_consen 109 VDLLILDDLGYEPLSEWEAELLFEIIDERYERK-PTIITSNLS 150 (178)
T ss_dssp SSCEEEETCTSS---HHHHHCTHHHHHHHHHT--EEEEEESS-
T ss_pred ccEecccccceeeecccccccchhhhhHhhccc-CeEeeCCCc
Confidence 3577899997655445533 22222211 123 588888743
No 188
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.0024 Score=75.35 Aligned_cols=128 Identities=23% Similarity=0.309 Sum_probs=80.1
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 258 (985)
.++|-+..+..|.+.+....-+ -..++....++...|+.|||||.||+.++.. .-+.=+..+-++.|+-
T Consensus 492 rViGQd~AV~avs~aIrraRaG--------L~dp~rPigsFlF~GPTGVGKTELAkaLA~~--Lfg~e~aliR~DMSEy- 560 (786)
T COG0542 492 RVIGQDEAVEAVSDAIRRARAG--------LGDPNRPIGSFLFLGPTGVGKTELAKALAEA--LFGDEQALIRIDMSEY- 560 (786)
T ss_pred ceeChHHHHHHHHHHHHHHhcC--------CCCCCCCceEEEeeCCCcccHHHHHHHHHHH--hcCCCccceeechHHH-
Confidence 6899999999999998765411 1122455678889999999999999998872 2111023333333321
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceE-EEEecCCCCCCcccHHHHHhhhcCC
Q 001995 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKF-FLVLDDVWTEEPQNWEQLLGCLRCG 322 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdv~~~~~~~~~~l~~~l~~~ 322 (985)
.-+.-++.|-+.++...--++ .-.|-+..+.++| +|.||.+....++.++-++..|..+
T Consensus 561 ----~EkHsVSrLIGaPPGYVGyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdG 620 (786)
T COG0542 561 ----MEKHSVSRLIGAPPGYVGYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDG 620 (786)
T ss_pred ----HHHHHHHHHhCCCCCCceecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCC
Confidence 112223344444443322222 2345555667777 8889999877777888888888755
No 189
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.02 E-value=0.0022 Score=65.56 Aligned_cols=38 Identities=32% Similarity=0.481 Sum_probs=30.7
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEe
Q 001995 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCV 254 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 254 (985)
..-.++|+|..|+||||++..+.. .....|..+++++-
T Consensus 12 ~~fr~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 12 DPFRMVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFLITP 49 (241)
T ss_pred CCceEEEECCCCCCHHHHHHHHHH--hhcccCCEEEEEec
Confidence 345789999999999999999987 57778877776643
No 190
>PRK06526 transposase; Provisional
Probab=97.02 E-value=0.0015 Score=68.46 Aligned_cols=100 Identities=15% Similarity=0.140 Sum_probs=53.9
Q ss_pred EEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCce
Q 001995 217 TIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKK 296 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 296 (985)
.-+.|+|++|+|||+||..+.+... ...+ .+.|+ +..++...+..... . . .....+.+. .+.
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~-~~g~-~v~f~------t~~~l~~~l~~~~~----~-~---~~~~~l~~l--~~~ 160 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRAC-QAGH-RVLFA------TAAQWVARLAAAHH----A-G---RLQAELVKL--GRY 160 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHH-HCCC-chhhh------hHHHHHHHHHHHHh----c-C---cHHHHHHHh--ccC
Confidence 4689999999999999999987422 2222 33443 23344444433211 1 1 112223222 245
Q ss_pred EEEEecCCCCCCcccHH--HHHhhhcCC-CCCcEEEEEcCch
Q 001995 297 FFLVLDDVWTEEPQNWE--QLLGCLRCG-SKESRILVTTRNE 335 (985)
Q Consensus 297 ~LlVlDdv~~~~~~~~~--~l~~~l~~~-~~gs~ilvTtR~~ 335 (985)
-|||+||+.......+. .+...+... ..++ +|+||...
T Consensus 161 dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s-~IitSn~~ 201 (254)
T PRK06526 161 PLLIVDEVGYIPFEPEAANLFFQLVSSRYERAS-LIVTSNKP 201 (254)
T ss_pred CEEEEcccccCCCCHHHHHHHHHHHHHHHhcCC-EEEEcCCC
Confidence 68999999654322332 244444321 2344 88888754
No 191
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.02 E-value=0.0058 Score=74.47 Aligned_cols=165 Identities=14% Similarity=0.236 Sum_probs=89.1
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 258 (985)
+.+|.++-+++|+++|..... .+.....++.++|++|+||||+|+.++. .....| +-+.++...
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~-----------~~~~~g~~i~l~GppG~GKTtl~~~ia~--~l~~~~---~~i~~~~~~ 386 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSR-----------VNKIKGPILCLVGPPGVGKTSLGQSIAK--ATGRKY---VRMALGGVR 386 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHh-----------cccCCCceEEEECCCCCCHHHHHHHHHH--HhCCCE---EEEEcCCCC
Confidence 689999999999998874220 0012445899999999999999999997 333222 123333333
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCCCccc----HHHHHhhhcCC------------
Q 001995 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTEEPQN----WEQLLGCLRCG------------ 322 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~----~~~l~~~l~~~------------ 322 (985)
+...+...- +.. .......+...+... ....-+++||.++...... .+.+...+...
T Consensus 387 d~~~i~g~~-~~~-----~g~~~G~~~~~l~~~-~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~ 459 (784)
T PRK10787 387 DEAEIRGHR-RTY-----IGSMPGKLIQKMAKV-GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEV 459 (784)
T ss_pred CHHHhccch-hcc-----CCCCCcHHHHHHHhc-CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccc
Confidence 332221110 001 111122233333332 2234478899996433221 34455544321
Q ss_pred ---CCCcEEEEEcCchhhHHhhcCcccccccCCCCChHHHHHHHHHHh
Q 001995 323 ---SKESRILVTTRNEKVAIAIGTTKFNIIPIELLSDEDCWSIFSQLA 367 (985)
Q Consensus 323 ---~~gs~ilvTtR~~~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 367 (985)
-...-+|.|+....+...+-. ...++++.+++.+|-.++.+++.
T Consensus 460 ~~dls~v~~i~TaN~~~i~~aLl~-R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 460 DYDLSDVMFVATSNSMNIPAPLLD-RMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred cccCCceEEEEcCCCCCCCHHHhc-ceeeeecCCCCHHHHHHHHHHhh
Confidence 123334455544333222211 12578899999999888877765
No 192
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.00 E-value=0.0003 Score=83.89 Aligned_cols=128 Identities=26% Similarity=0.198 Sum_probs=80.4
Q ss_pred CCeEEEEEEcCCCCCccCCCccccCCCCceEEEccCcCCcchhhhHHHhhccCCcceeecCC--CCCCCCcccccCCCCC
Q 001995 551 WKARHLMITGETRSEMVPFPSMVYDETKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL--PVGQIPKGIKKLIHLR 628 (985)
Q Consensus 551 ~~~r~l~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~--~~~~lp~~i~~l~~Lr 628 (985)
.+.+++.+.+...-..........-+|.|++|.+.+.... .......+.++++|+.||++ +++.+ ..|+.|++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~--~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFD--NDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceec--chhHHHHhhccCccceeecCCCCccCc-HHHhccccHH
Confidence 4667777766443211111122345788999988886532 22245557788888888888 55555 6788888888
Q ss_pred eEecCCCCCccccc--hhhcCCCCCcEeeccCcccccccchhh-------hhccccceeecccc
Q 001995 629 YLALGENPWIKELP--EALCELCNLQTLDVSLCHYLKRLPERI-------GQLINLRHLMNSKE 683 (985)
Q Consensus 629 ~L~L~~~~~i~~lp--~~i~~L~~L~~L~l~~~~~l~~lp~~i-------~~L~~L~~L~l~~~ 683 (985)
.|.+++-. +..-+ ..+.+|++|++||+|...... .+.-+ ..|++||.||.+++
T Consensus 199 ~L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~~~~-~~~ii~qYlec~~~LpeLrfLDcSgT 260 (699)
T KOG3665|consen 199 VLSMRNLE-FESYQDLIDLFNLKKLRVLDISRDKNND-DTKIIEQYLECGMVLPELRFLDCSGT 260 (699)
T ss_pred HHhccCCC-CCchhhHHHHhcccCCCeeecccccccc-chHHHHHHHHhcccCccccEEecCCc
Confidence 88887765 44322 246778888888888766322 22111 13788888887743
No 193
>CHL00176 ftsH cell division protein; Validated
Probab=96.99 E-value=0.0073 Score=71.63 Aligned_cols=185 Identities=19% Similarity=0.233 Sum_probs=96.0
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 258 (985)
+++|.++..+++.+.+..-..+... ...+....+-|.++|++|.|||++|+.++.. ... -|+.++.
T Consensus 184 dv~G~~~~k~~l~eiv~~lk~~~~~-----~~~g~~~p~gVLL~GPpGTGKT~LAralA~e--~~~-----p~i~is~-- 249 (638)
T CHL00176 184 DIAGIEEAKEEFEEVVSFLKKPERF-----TAVGAKIPKGVLLVGPPGTGKTLLAKAIAGE--AEV-----PFFSISG-- 249 (638)
T ss_pred hccChHHHHHHHHHHHHHHhCHHHH-----hhccCCCCceEEEECCCCCCHHHHHHHHHHH--hCC-----CeeeccH--
Confidence 6788887666665544321100000 0000123456999999999999999999873 221 2333321
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCCC----------cccHH----HHHhhhcC--C
Q 001995 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTEE----------PQNWE----QLLGCLRC--G 322 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------~~~~~----~l~~~l~~--~ 322 (985)
.++. ....+ .....+...+.......+++|++|+++... ...+. .++..+.. .
T Consensus 250 --s~f~----~~~~g-----~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~ 318 (638)
T CHL00176 250 --SEFV----EMFVG-----VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKG 318 (638)
T ss_pred --HHHH----HHhhh-----hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccC
Confidence 1111 11101 111233344555556789999999995321 11222 22222221 2
Q ss_pred CCCcEEEEEcCchhhHH-hhc-Cc-ccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCC
Q 001995 323 SKESRILVTTRNEKVAI-AIG-TT-KFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGL 394 (985)
Q Consensus 323 ~~gs~ilvTtR~~~v~~-~~~-~~-~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~I~~~~~Gl 394 (985)
..+..||.||...+... .+- .. -...+.++..+.++-.++++.++..... .. ......+++.+.|.
T Consensus 319 ~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~--~~----d~~l~~lA~~t~G~ 387 (638)
T CHL00176 319 NKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL--SP----DVSLELIARRTPGF 387 (638)
T ss_pred CCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc--ch----hHHHHHHHhcCCCC
Confidence 34556777776644322 211 10 1146788888889988898887654221 11 22356677777773
No 194
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.99 E-value=0.0042 Score=77.20 Aligned_cols=138 Identities=20% Similarity=0.281 Sum_probs=79.3
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 258 (985)
.++|.+..++.+...+.....+ ...+.....++.++|+.|+|||++|+.+... ....-...+.++.+.-.
T Consensus 566 ~v~GQ~~av~~v~~~i~~~~~g--------l~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~--l~~~~~~~i~~d~s~~~ 635 (852)
T TIGR03346 566 RVVGQDEAVEAVSDAIRRSRAG--------LSDPNRPIGSFLFLGPTGVGKTELAKALAEF--LFDDEDAMVRIDMSEYM 635 (852)
T ss_pred ccCCChHHHHHHHHHHHHHhcc--------CCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhhc
Confidence 6899999999999998754200 0001223467889999999999999999872 22211233444444322
Q ss_pred CHHHHHHHHHHHhcCCCCCCC---CHHHHHHHHHHHhcCceEEEEecCCCCCCcccHHHHHhhhcCCC-----------C
Q 001995 259 DDIRIAKAILESLKGSATNAV---ESETVLKQLRESIEGKKFFLVLDDVWTEEPQNWEQLLGCLRCGS-----------K 324 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~---~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~ 324 (985)
+... ...+.+.++... ....+...++. ....+|+||++.......+..+...+..+. .
T Consensus 636 ~~~~-----~~~l~g~~~g~~g~~~~g~l~~~v~~---~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~r 707 (852)
T TIGR03346 636 EKHS-----VARLIGAPPGYVGYEEGGQLTEAVRR---KPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFR 707 (852)
T ss_pred ccch-----HHHhcCCCCCccCcccccHHHHHHHc---CCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecC
Confidence 2111 122222222211 11223322221 233599999998877888888888775441 2
Q ss_pred CcEEEEEcCc
Q 001995 325 ESRILVTTRN 334 (985)
Q Consensus 325 gs~ilvTtR~ 334 (985)
.+-||+||..
T Consensus 708 n~iiI~TSn~ 717 (852)
T TIGR03346 708 NTVIIMTSNL 717 (852)
T ss_pred CcEEEEeCCc
Confidence 2337777764
No 195
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.97 E-value=0.00045 Score=82.40 Aligned_cols=101 Identities=23% Similarity=0.156 Sum_probs=46.6
Q ss_pred CCceEEEccCcCCcchhhhHHHhhccCCcceeecCCCCCC----CCcccccCCCCCeEecCCCCCccccchhhcCCCCCc
Q 001995 577 TKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGLPVGQ----IPKGIKKLIHLRYLALGENPWIKELPEALCELCNLQ 652 (985)
Q Consensus 577 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~----lp~~i~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~ 652 (985)
.+|+.|++.|.... ...++.++-..++.|+.|.+++... +..-..++++|++||+|+++ ++.+ ..|++|+|||
T Consensus 122 ~nL~~LdI~G~~~~-s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELF-SNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNL-SGISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchh-hccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCc-HHHhccccHH
Confidence 34555555554221 1222333334455555555542211 11223445556666666665 5555 4455666666
Q ss_pred EeeccCcccccccc--hhhhhccccceeecc
Q 001995 653 TLDVSLCHYLKRLP--ERIGQLINLRHLMNS 681 (985)
Q Consensus 653 ~L~l~~~~~l~~lp--~~i~~L~~L~~L~l~ 681 (985)
+|.+++=. +..-+ .++.+|++|++||+|
T Consensus 199 ~L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS 228 (699)
T KOG3665|consen 199 VLSMRNLE-FESYQDLIDLFNLKKLRVLDIS 228 (699)
T ss_pred HHhccCCC-CCchhhHHHHhcccCCCeeecc
Confidence 65555322 22111 234555666666655
No 196
>PRK08118 topology modulation protein; Reviewed
Probab=96.96 E-value=0.0013 Score=64.25 Aligned_cols=34 Identities=32% Similarity=0.626 Sum_probs=26.7
Q ss_pred EEEEEccCCchHHHHHHHHhcchhhh-ccCCceEE
Q 001995 218 IISITGMGGIGKTTLAKLIFNDNEVR-NHFNEKIW 251 (985)
Q Consensus 218 vv~I~G~gGiGKTtLa~~v~~~~~~~-~~f~~~~w 251 (985)
.|.|+|++|+||||||+.+++..... -+|+..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 58999999999999999999853332 45666665
No 197
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.94 E-value=0.0095 Score=67.00 Aligned_cols=120 Identities=23% Similarity=0.265 Sum_probs=74.4
Q ss_pred EEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceE
Q 001995 218 IISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKF 297 (985)
Q Consensus 218 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~ 297 (985)
++.|.|+-++||||+++.+... ..+. .+++...+......-+.+. ...+.+.-..++.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~--~~~~---~iy~~~~d~~~~~~~l~d~-----------------~~~~~~~~~~~~~ 96 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKG--LLEE---IIYINFDDLRLDRIELLDL-----------------LRAYIELKEREKS 96 (398)
T ss_pred EEEEECCccccHHHHHHHHHhh--CCcc---eEEEEecchhcchhhHHHH-----------------HHHHHHhhccCCc
Confidence 9999999999999999666652 2222 5555443211111111111 1111111122778
Q ss_pred EEEecCCCCCCcccHHHHHhhhcCCCCCcEEEEEcCchhhH-----HhhcCcccccccCCCCChHHHHHHH
Q 001995 298 FLVLDDVWTEEPQNWEQLLGCLRCGSKESRILVTTRNEKVA-----IAIGTTKFNIIPIELLSDEDCWSIF 363 (985)
Q Consensus 298 LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~-----~~~~~~~~~~~~l~~L~~~e~~~Lf 363 (985)
.++||.|.. ...|......+.+.++. +|++|+-+.... ...... ...+++-||+..|-..+-
T Consensus 97 yifLDEIq~--v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR-~~~~~l~PlSF~Efl~~~ 163 (398)
T COG1373 97 YIFLDEIQN--VPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGR-GKDLELYPLSFREFLKLK 163 (398)
T ss_pred eEEEecccC--chhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCC-ceeEEECCCCHHHHHhhc
Confidence 999999954 56899988888877666 888888765432 222222 367899999999976543
No 198
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.93 E-value=0.0035 Score=77.31 Aligned_cols=138 Identities=22% Similarity=0.287 Sum_probs=78.6
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 258 (985)
.++|.+..++.|.+.+.....+ -..+.....++.++|+.|+|||.+|+.++.. .-+.....+-++++.-.
T Consensus 567 ~v~GQ~~Av~~v~~~i~~~~~g--------l~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~--l~~~~~~~~~~dmse~~ 636 (852)
T TIGR03345 567 RVIGQDHALEAIAERIRTARAG--------LEDPRKPLGVFLLVGPSGVGKTETALALAEL--LYGGEQNLITINMSEFQ 636 (852)
T ss_pred eEcChHHHHHHHHHHHHHHhcC--------CCCCCCCceEEEEECCCCCCHHHHHHHHHHH--HhCCCcceEEEeHHHhh
Confidence 6899999999999998653200 0011334568999999999999999988762 21111222222322211
Q ss_pred CHHHHHHHHHHHhcCCCCCCC---CHHHHHHHHHHHhcCceEEEEecCCCCCCcccHHHHHhhhcCCC-----------C
Q 001995 259 DDIRIAKAILESLKGSATNAV---ESETVLKQLRESIEGKKFFLVLDDVWTEEPQNWEQLLGCLRCGS-----------K 324 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~---~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~ 324 (985)
+ ..-...+.+.++... ....+...++ +...-+|+||++...+...++.+...+..+. .
T Consensus 637 ~-----~~~~~~l~g~~~gyvg~~~~g~L~~~v~---~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~ 708 (852)
T TIGR03345 637 E-----AHTVSRLKGSPPGYVGYGEGGVLTEAVR---RKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFK 708 (852)
T ss_pred h-----hhhhccccCCCCCcccccccchHHHHHH---hCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEecc
Confidence 1 111112222222111 1122333333 2456799999998777777777777776542 3
Q ss_pred CcEEEEEcCc
Q 001995 325 ESRILVTTRN 334 (985)
Q Consensus 325 gs~ilvTtR~ 334 (985)
.+-||+||-.
T Consensus 709 n~iiI~TSNl 718 (852)
T TIGR03345 709 NTVILLTSNA 718 (852)
T ss_pred ccEEEEeCCC
Confidence 4556777654
No 199
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.92 E-value=0.0046 Score=64.03 Aligned_cols=103 Identities=18% Similarity=0.243 Sum_probs=58.6
Q ss_pred CEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCc
Q 001995 216 PTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEGK 295 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 295 (985)
...+.++|.+|+|||+||..+++. ....-..++++++ .++...+-..... .....+. +.+.+. +
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~--l~~~g~~v~~it~------~~l~~~l~~~~~~---~~~~~~~----~l~~l~-~ 162 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNE--LLLRGKSVLIITV------ADIMSAMKDTFSN---SETSEEQ----LLNDLS-N 162 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEH------HHHHHHHHHHHhh---ccccHHH----HHHHhc-c
Confidence 357899999999999999999984 3333345566643 4444444433311 1112222 223344 3
Q ss_pred eEEEEecCCCCCCcccHHH--HHhhhcCC-CCCcEEEEEcCc
Q 001995 296 KFFLVLDDVWTEEPQNWEQ--LLGCLRCG-SKESRILVTTRN 334 (985)
Q Consensus 296 ~~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~ilvTtR~ 334 (985)
.=+|||||+.......|.. +...+... ...-.+||||-.
T Consensus 163 ~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 163 VDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 4588889997655556654 33333321 122347777764
No 200
>PRK09183 transposase/IS protein; Provisional
Probab=96.91 E-value=0.0042 Score=65.50 Aligned_cols=101 Identities=15% Similarity=0.107 Sum_probs=54.0
Q ss_pred EEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCce
Q 001995 217 TIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKK 296 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 296 (985)
..+.|+|++|+|||+||..+.+... ..-..+.+++ ..++...+...... .. +...+.+. ..+.
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~--~~G~~v~~~~------~~~l~~~l~~a~~~-----~~---~~~~~~~~-~~~~ 165 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAV--RAGIKVRFTT------AADLLLQLSTAQRQ-----GR---YKTTLQRG-VMAP 165 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHH--HcCCeEEEEe------HHHHHHHHHHHHHC-----Cc---HHHHHHHH-hcCC
Confidence 4688999999999999999976322 2222344443 22333333222111 01 12223222 2345
Q ss_pred EEEEecCCCCCCcccHH--HHHhhhcCC-CCCcEEEEEcCch
Q 001995 297 FFLVLDDVWTEEPQNWE--QLLGCLRCG-SKESRILVTTRNE 335 (985)
Q Consensus 297 ~LlVlDdv~~~~~~~~~--~l~~~l~~~-~~gs~ilvTtR~~ 335 (985)
-++|+||+.-.....+. .+...+... ..++ +||||...
T Consensus 166 dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~~s-~iiTsn~~ 206 (259)
T PRK09183 166 RLLIIDEIGYLPFSQEEANLFFQVIAKRYEKGS-MILTSNLP 206 (259)
T ss_pred CEEEEcccccCCCChHHHHHHHHHHHHHHhcCc-EEEecCCC
Confidence 69999999653333332 344444321 2344 88888753
No 201
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.88 E-value=0.0049 Score=69.16 Aligned_cols=153 Identities=18% Similarity=0.241 Sum_probs=84.4
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 258 (985)
.++||++.++.+...+..+. -|.|.|++|+|||++|+.+.........|... -+..+
T Consensus 21 ~i~gre~vI~lll~aalag~-------------------hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~-~~~ft--- 77 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSGE-------------------SVFLLGPPGIAKSLIARRLKFAFQNARAFEYL-MTRFS--- 77 (498)
T ss_pred hccCcHHHHHHHHHHHccCC-------------------CEEEECCCChhHHHHHHHHHHHhcccCcceee-eeeec---
Confidence 68999999999998887544 58999999999999999998732112223211 01111
Q ss_pred CHHHHHHHH-HHHhcCCCCCCCCHHHHHHHHHHHhcC---ceEEEEecCCCCCCcccHHHHHhhhcCCC---------CC
Q 001995 259 DDIRIAKAI-LESLKGSATNAVESETVLKQLRESIEG---KKFFLVLDDVWTEEPQNWEQLLGCLRCGS---------KE 325 (985)
Q Consensus 259 ~~~~~~~~i-~~~l~~~~~~~~~~~~~~~~l~~~l~~---k~~LlVlDdv~~~~~~~~~~l~~~l~~~~---------~g 325 (985)
.+.+++..+ +...... ..+.+...| ..-++++|+++.........++..+.... -.
T Consensus 78 tp~DLfG~l~i~~~~~~-----------g~f~r~~~G~L~~A~lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp 146 (498)
T PRK13531 78 TPEEVFGPLSIQALKDE-----------GRYQRLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIP 146 (498)
T ss_pred CcHHhcCcHHHhhhhhc-----------CchhhhcCCccccccEEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCC
Confidence 112222111 1111000 001111111 11289999999887777777777774221 12
Q ss_pred cEEEEEcCchhhH------HhhcCcccccccCCCCChHHH-HHHHHHH
Q 001995 326 SRILVTTRNEKVA------IAIGTTKFNIIPIELLSDEDC-WSIFSQL 366 (985)
Q Consensus 326 s~ilvTtR~~~v~------~~~~~~~~~~~~l~~L~~~e~-~~Lf~~~ 366 (985)
.++++++.++-.. ..+.-. ...+.+++++.++. .+++...
T Consensus 147 ~rfiv~ATN~LPE~g~~leAL~DRF-liri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 147 MRLLVTASNELPEADSSLEALYDRM-LIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred CcEEEEECCCCcccCCchHHhHhhE-EEEEECCCCCchHHHHHHHHcc
Confidence 2465555543221 111111 14678899985444 7777653
No 202
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.87 E-value=0.0054 Score=66.10 Aligned_cols=102 Identities=18% Similarity=0.298 Sum_probs=62.4
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcC
Q 001995 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEG 294 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 294 (985)
..+-+.|+|..|+|||.||..+++. ....-..+.++++. .++..+....... .... .+.. + .
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~--l~~~g~~v~~~~~~------~l~~~lk~~~~~~-----~~~~---~l~~-l-~ 216 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANE--LAKKGVSSTLLHFP------EFIRELKNSISDG-----SVKE---KIDA-V-K 216 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEEEHH------HHHHHHHHHHhcC-----cHHH---HHHH-h-c
Confidence 3467999999999999999999994 32222345666553 4555555444211 1222 2222 2 3
Q ss_pred ceEEEEecCCCCCCcccHHH--HHhhh-cCC-CCCcEEEEEcCc
Q 001995 295 KKFFLVLDDVWTEEPQNWEQ--LLGCL-RCG-SKESRILVTTRN 334 (985)
Q Consensus 295 k~~LlVlDdv~~~~~~~~~~--l~~~l-~~~-~~gs~ilvTtR~ 334 (985)
+-=||||||+.-+....|.. +...+ ... ..+-.+|+||-.
T Consensus 217 ~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 217 EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 45689999997666667753 54443 322 234568888864
No 203
>PRK04296 thymidine kinase; Provisional
Probab=96.86 E-value=0.0029 Score=63.40 Aligned_cols=113 Identities=12% Similarity=0.035 Sum_probs=64.4
Q ss_pred EEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCC--CCCHHHHHHHHHHHhcC
Q 001995 217 TIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATN--AVESETVLKQLRESIEG 294 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~l~~ 294 (985)
.++.|+|..|.||||+|..++. +...+-..++.+. ..++.......++++++..... ....+++...+.+ ..+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~--~~~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~ 77 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAY--NYEERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGE 77 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHH--HHHHcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCC
Confidence 4789999999999999999887 3433333444442 2222222234455555432111 1233445555544 334
Q ss_pred ceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEEEEEcCchh
Q 001995 295 KKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRILVTTRNEK 336 (985)
Q Consensus 295 k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~ 336 (985)
+.-+||+|.+.-.+.++..++...+ ...|..||+|.++.+
T Consensus 78 ~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 78 KIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTD 117 (190)
T ss_pred CCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCcc
Confidence 5568999999543223233344333 245678999998754
No 204
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.85 E-value=0.058 Score=59.60 Aligned_cols=42 Identities=17% Similarity=0.397 Sum_probs=32.9
Q ss_pred hhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcc
Q 001995 184 NHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFND 239 (985)
Q Consensus 184 ~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 239 (985)
+.-.+.|.+.+.... .....+|+|.|.=|+||||+.+.+.+.
T Consensus 2 ~~~a~~la~~I~~~~--------------~~~~~~IgL~G~WGsGKSs~l~~l~~~ 43 (325)
T PF07693_consen 2 KPYAKALAEIIKNPD--------------SDDPFVIGLYGEWGSGKSSFLNMLKEE 43 (325)
T ss_pred hHHHHHHHHHHhccC--------------CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 444566777776443 356789999999999999999999873
No 205
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.81 E-value=0.0075 Score=65.53 Aligned_cols=101 Identities=18% Similarity=0.231 Sum_probs=65.2
Q ss_pred hHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccC-Cc-eEEEEeCC-CCCHHH
Q 001995 186 LQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHF-NE-KIWVCVSE-PFDDIR 262 (985)
Q Consensus 186 ~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f-~~-~~wv~~~~-~~~~~~ 262 (985)
...++++.+.... .-+.+.|+|..|+|||||++.+++. +.... +. ++|+-+.+ ..++.+
T Consensus 119 ~~~RvID~l~PiG----------------kGQR~LIvG~pGtGKTTLl~~la~~--i~~~~~dv~~vv~lIgER~~EV~d 180 (380)
T PRK12608 119 LSMRVVDLVAPIG----------------KGQRGLIVAPPRAGKTVLLQQIAAA--VAANHPEVHLMVLLIDERPEEVTD 180 (380)
T ss_pred hhHhhhhheeecC----------------CCceEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEEecCCCCCHHH
Confidence 4456788777433 3356799999999999999999883 33322 33 46766654 456788
Q ss_pred HHHHHHHHhcCCCCCCCCHHH-----HHHHHHHHh--cCceEEEEecCC
Q 001995 263 IAKAILESLKGSATNAVESET-----VLKQLRESI--EGKKFFLVLDDV 304 (985)
Q Consensus 263 ~~~~i~~~l~~~~~~~~~~~~-----~~~~l~~~l--~~k~~LlVlDdv 304 (985)
+.+.+...+.....+...... ....+.+++ ++++++||+|++
T Consensus 181 f~~~i~~~Vvast~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsl 229 (380)
T PRK12608 181 MRRSVKGEVYASTFDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSL 229 (380)
T ss_pred HHHHHhhhEEeecCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 888888877654333222221 122222333 589999999999
No 206
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.80 E-value=0.0049 Score=63.15 Aligned_cols=49 Identities=20% Similarity=0.320 Sum_probs=37.1
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHH
Q 001995 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAK 265 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 265 (985)
+.-.++.|+|.+|+|||++|.+++.. ....-..++|++... ++...+.+
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC-CCHHHHHH
Confidence 45689999999999999999998873 333446789999876 66555443
No 207
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.77 E-value=0.0058 Score=63.43 Aligned_cols=47 Identities=23% Similarity=0.298 Sum_probs=35.6
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHH
Q 001995 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRI 263 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 263 (985)
..-.++.|+|.+|+|||++|.+++.. ....-..++|++.. .++...+
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~--~~~~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVE--AAKNGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEECC-CCCHHHH
Confidence 35579999999999999999999874 32334568899887 5555443
No 208
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.76 E-value=0.01 Score=65.70 Aligned_cols=125 Identities=18% Similarity=0.203 Sum_probs=78.9
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhc--------------
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRN-------------- 244 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-------------- 244 (985)
+++|-+....++..+..... .....+.++|+.|+||||+|..+++.-.-..
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~---------------~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~ 66 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG---------------RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCK 66 (325)
T ss_pred CcccchhHHHHHHHHHHhcC---------------CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhh
Confidence 46677777888888876322 1233699999999999999999987311000
Q ss_pred -----cCCceEEEEeCCCCC---HHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCCCcccHHHHH
Q 001995 245 -----HFNEKIWVCVSEPFD---DIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTEEPQNWEQLL 316 (985)
Q Consensus 245 -----~f~~~~wv~~~~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~ 316 (985)
..+.+..+..+.... ..+..+++.+....... .++.-++|+|+++....+.-..++
T Consensus 67 ~~~~~~~~d~lel~~s~~~~~~i~~~~vr~~~~~~~~~~~----------------~~~~kviiidead~mt~~A~nall 130 (325)
T COG0470 67 LIPAGNHPDFLELNPSDLRKIDIIVEQVRELAEFLSESPL----------------EGGYKVVIIDEADKLTEDAANALL 130 (325)
T ss_pred HHhhcCCCceEEecccccCCCcchHHHHHHHHHHhccCCC----------------CCCceEEEeCcHHHHhHHHHHHHH
Confidence 123444555444333 23333333333322111 356789999999776666666777
Q ss_pred hhhcCCCCCcEEEEEcCc
Q 001995 317 GCLRCGSKESRILVTTRN 334 (985)
Q Consensus 317 ~~l~~~~~gs~ilvTtR~ 334 (985)
..+........+|++|..
T Consensus 131 k~lEep~~~~~~il~~n~ 148 (325)
T COG0470 131 KTLEEPPKNTRFILITND 148 (325)
T ss_pred HHhccCCCCeEEEEEcCC
Confidence 777777777788888873
No 209
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.74 E-value=0.00035 Score=70.96 Aligned_cols=79 Identities=25% Similarity=0.261 Sum_probs=45.9
Q ss_pred ccCCcceeecCC-----CCCCCCcccccCCCCCeEecCCCCC---ccccchhhcCCCCCcEeeccCcccc--cccchhhh
Q 001995 601 DRLTCLRSIDGL-----PVGQIPKGIKKLIHLRYLALGENPW---IKELPEALCELCNLQTLDVSLCHYL--KRLPERIG 670 (985)
Q Consensus 601 ~~l~~Lr~L~l~-----~~~~lp~~i~~l~~Lr~L~L~~~~~---i~~lp~~i~~L~~L~~L~l~~~~~l--~~lp~~i~ 670 (985)
..++.++.|||. .+.++-.-+.+|++|++|+|+.|.. |..+| -.+.+|++|-|.|+. + ...-..+.
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl~~lVLNgT~-L~w~~~~s~l~ 143 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNLRVLVLNGTG-LSWTQSTSSLD 143 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccceEEEEEcCCC-CChhhhhhhhh
Confidence 445566666665 1222223345677778888877751 22333 245678888887765 2 23334456
Q ss_pred hccccceeecccc
Q 001995 671 QLINLRHLMNSKE 683 (985)
Q Consensus 671 ~L~~L~~L~l~~~ 683 (985)
.++.++.|+++.|
T Consensus 144 ~lP~vtelHmS~N 156 (418)
T KOG2982|consen 144 DLPKVTELHMSDN 156 (418)
T ss_pred cchhhhhhhhccc
Confidence 6777777777755
No 210
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.74 E-value=0.016 Score=67.80 Aligned_cols=186 Identities=15% Similarity=0.193 Sum_probs=93.7
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 258 (985)
+++|-+..++++.+++..-..+... ...+....+-+.++|++|.|||++|+.+++. .... ++.++.
T Consensus 56 di~g~~~~k~~l~~~~~~l~~~~~~-----~~~g~~~~~giLL~GppGtGKT~la~alA~~--~~~~-----~~~i~~-- 121 (495)
T TIGR01241 56 DVAGIDEAKEELMEIVDFLKNPSKF-----TKLGAKIPKGVLLVGPPGTGKTLLAKAVAGE--AGVP-----FFSISG-- 121 (495)
T ss_pred HhCCHHHHHHHHHHHHHHHHCHHHH-----HhcCCCCCCcEEEECCCCCCHHHHHHHHHHH--cCCC-----eeeccH--
Confidence 6888887766665544311100000 0000123455899999999999999999973 2212 233221
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCCC----------cccHHH----HHhhhc--CC
Q 001995 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTEE----------PQNWEQ----LLGCLR--CG 322 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------~~~~~~----l~~~l~--~~ 322 (985)
..+ .....+ .....+...+.......+.+|+||+++... ...+.. ++..+. ..
T Consensus 122 --~~~----~~~~~g-----~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~ 190 (495)
T TIGR01241 122 --SDF----VEMFVG-----VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGT 190 (495)
T ss_pred --HHH----HHHHhc-----ccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccC
Confidence 111 111111 112233334444445678999999994311 111222 222222 12
Q ss_pred CCCcEEEEEcCchh-hHHhhcC--cccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCCh
Q 001995 323 SKESRILVTTRNEK-VAIAIGT--TKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLP 395 (985)
Q Consensus 323 ~~gs~ilvTtR~~~-v~~~~~~--~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlP 395 (985)
..+..||.||.... +...+-. .-...+.+...+.++-.++|+.+...... ... .....+++.+.|.-
T Consensus 191 ~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~--~~~----~~l~~la~~t~G~s 260 (495)
T TIGR01241 191 NTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKL--APD----VDLKAVARRTPGFS 260 (495)
T ss_pred CCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCC--Ccc----hhHHHHHHhCCCCC
Confidence 23445666665543 2222211 11146788888888888888877643321 111 12346777777743
No 211
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.74 E-value=0.00015 Score=73.65 Aligned_cols=59 Identities=20% Similarity=0.196 Sum_probs=37.5
Q ss_pred CCCCCeEecCCCCCccccchh--h-cCCCCCcEeeccCccccccc---chhhhhccccceeeccccc
Q 001995 624 LIHLRYLALGENPWIKELPEA--L-CELCNLQTLDVSLCHYLKRL---PERIGQLINLRHLMNSKEE 684 (985)
Q Consensus 624 l~~Lr~L~L~~~~~i~~lp~~--i-~~L~~L~~L~l~~~~~l~~l---p~~i~~L~~L~~L~l~~~~ 684 (985)
+.-|..|.+.++. |...-.. | ..+.+++.|||.+|. +..- -.-+.+|+.|+.|+++.|.
T Consensus 44 ~ra~ellvln~~~-id~~gd~~~~~~~~~~v~elDL~~N~-iSdWseI~~ile~lP~l~~LNls~N~ 108 (418)
T KOG2982|consen 44 LRALELLVLNGSI-IDNEGDVMLFGSSVTDVKELDLTGNL-ISDWSEIGAILEQLPALTTLNLSCNS 108 (418)
T ss_pred ccchhhheecCCC-CCcchhHHHHHHHhhhhhhhhcccch-hccHHHHHHHHhcCccceEeeccCCc
Confidence 3345566666665 5443221 2 356789999999987 5433 3334678999999998443
No 212
>PHA00729 NTP-binding motif containing protein
Probab=96.73 E-value=0.0064 Score=61.44 Aligned_cols=25 Identities=32% Similarity=0.231 Sum_probs=22.2
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhc
Q 001995 214 QRPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
.+...|.|+|.+|+||||||..+.+
T Consensus 15 ~~f~nIlItG~pGvGKT~LA~aLa~ 39 (226)
T PHA00729 15 NGFVSAVIFGKQGSGKTTYALKVAR 39 (226)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999999987
No 213
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.047 Score=63.08 Aligned_cols=163 Identities=17% Similarity=0.276 Sum_probs=93.5
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 258 (985)
+-+|.++-.++|++.|.-.. ..+.-+-+++++||++|||||.|++.++. .....|-. ++++.-.
T Consensus 324 dHYGLekVKeRIlEyLAV~~-----------l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~RkfvR---~sLGGvr 387 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQK-----------LTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKFVR---ISLGGVR 387 (782)
T ss_pred cccCchhHHHHHHHHHHHHH-----------HhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCEEE---EecCccc
Confidence 67899999999999997432 01123457999999999999999999998 44444422 2333333
Q ss_pred CHHHHHHHHHHHhcCC--CCCCCCHHHHHHHHHHHhcCceEEEEecCCCCCCc----ccHHHHHhhhcCCCC--------
Q 001995 259 DDIRIAKAILESLKGS--ATNAVESETVLKQLRESIEGKKFFLVLDDVWTEEP----QNWEQLLGCLRCGSK-------- 324 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~--~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----~~~~~l~~~l~~~~~-------- 324 (985)
|..++ .+. ..-..-...++..+++. +.+.-|++||.++-... +.-..++..|.+..+
T Consensus 388 DEAEI--------RGHRRTYIGamPGrIiQ~mkka-~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYL 458 (782)
T COG0466 388 DEAEI--------RGHRRTYIGAMPGKIIQGMKKA-GVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYL 458 (782)
T ss_pred cHHHh--------ccccccccccCChHHHHHHHHh-CCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccc
Confidence 33222 111 11112233444444443 45677899999853221 122334444332111
Q ss_pred -----CcEE-EEEcCch-h--hHHhhcCcccccccCCCCChHHHHHHHHHHhc
Q 001995 325 -----ESRI-LVTTRNE-K--VAIAIGTTKFNIIPIELLSDEDCWSIFSQLAL 368 (985)
Q Consensus 325 -----gs~i-lvTtR~~-~--v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~ 368 (985)
=|.| .|||-+. + .+..++-. .++++.+.+++|=.+.-+++..
T Consensus 459 ev~yDLS~VmFiaTANsl~tIP~PLlDRM--EiI~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 459 EVPYDLSKVMFIATANSLDTIPAPLLDRM--EVIRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred cCccchhheEEEeecCccccCChHHhcce--eeeeecCCChHHHHHHHHHhcc
Confidence 1333 3444432 2 12222222 6899999999998887777654
No 214
>PRK07261 topology modulation protein; Provisional
Probab=96.70 E-value=0.0038 Score=61.41 Aligned_cols=65 Identities=17% Similarity=0.287 Sum_probs=39.3
Q ss_pred EEEEEccCCchHHHHHHHHhcchhh-hccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCce
Q 001995 218 IISITGMGGIGKTTLAKLIFNDNEV-RNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKK 296 (985)
Q Consensus 218 vv~I~G~gGiGKTtLa~~v~~~~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 296 (985)
.|.|+|++|+||||||+.+...... .-+.+...|-.. ....+.++....+.+.+.+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~ 60 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPN---------------------WQERDDDDMIADISNFLLKHD 60 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccc---------------------cccCCHHHHHHHHHHHHhCCC
Confidence 4899999999999999998763211 112333444211 112234455556666666666
Q ss_pred EEEEecCCC
Q 001995 297 FFLVLDDVW 305 (985)
Q Consensus 297 ~LlVlDdv~ 305 (985)
.|+|+..
T Consensus 61 --wIidg~~ 67 (171)
T PRK07261 61 --WIIDGNY 67 (171)
T ss_pred --EEEcCcc
Confidence 6778874
No 215
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.021 Score=63.10 Aligned_cols=163 Identities=20% Similarity=0.249 Sum_probs=91.9
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc
Q 001995 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIE 293 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 293 (985)
.....|.+.|++|+|||+||..++. ...|+.+=-++..+-. +. .+......+...+.+.-+
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~----~S~FPFvKiiSpe~mi-------------G~--sEsaKc~~i~k~F~DAYk 596 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIAL----SSDFPFVKIISPEDMI-------------GL--SESAKCAHIKKIFEDAYK 596 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHh----hcCCCeEEEeChHHcc-------------Cc--cHHHHHHHHHHHHHHhhc
Confidence 4667889999999999999999986 4568765444321110 00 111122233344445556
Q ss_pred CceEEEEecCCCCCCcccH------------HHHHhhhc---CCCCCcEEEEEcCchhhHHhhcCcc--cccccCCCCCh
Q 001995 294 GKKFFLVLDDVWTEEPQNW------------EQLLGCLR---CGSKESRILVTTRNEKVAIAIGTTK--FNIIPIELLSD 356 (985)
Q Consensus 294 ~k~~LlVlDdv~~~~~~~~------------~~l~~~l~---~~~~gs~ilvTtR~~~v~~~~~~~~--~~~~~l~~L~~ 356 (985)
..--.||+||+.. .-+| ..+...+. ..++.--|+-||-...+...|+... ...++++.++.
T Consensus 597 S~lsiivvDdiEr--LiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~ 674 (744)
T KOG0741|consen 597 SPLSIIVVDDIER--LLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTT 674 (744)
T ss_pred CcceEEEEcchhh--hhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCc
Confidence 6778999999943 1122 22222232 2233334566777778887776531 14688888887
Q ss_pred -HHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHHHHHhhh
Q 001995 357 -EDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVKTLGSLL 405 (985)
Q Consensus 357 -~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~~~~L 405 (985)
++..+.+...-. -.+.+.+.++.+...+| +-..|+.+-.++
T Consensus 675 ~~~~~~vl~~~n~------fsd~~~~~~~~~~~~~~--~~vgIKklL~li 716 (744)
T KOG0741|consen 675 GEQLLEVLEELNI------FSDDEVRAIAEQLLSKK--VNVGIKKLLMLI 716 (744)
T ss_pred hHHHHHHHHHccC------CCcchhHHHHHHHhccc--cchhHHHHHHHH
Confidence 777777765421 11233344555555555 333344444443
No 216
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.69 E-value=0.02 Score=59.90 Aligned_cols=172 Identities=22% Similarity=0.197 Sum_probs=99.6
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcc-hhhhccCCceEEEEeCCC
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFND-NEVRNHFNEKIWVCVSEP 257 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~-~~~~~~f~~~~wv~~~~~ 257 (985)
.++|-.++..++..++.... . -+...-|.|+|+.|.|||+|......+ +++.++ .+-|.....
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~----------~---~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~---~l~v~Lng~ 88 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTI----------L---HGESNSVIIIGPRGSGKTILIDTRLSDIQENGEN---FLLVRLNGE 88 (408)
T ss_pred ceeehHHHHHHHHHHHHHHH----------H---hcCCCceEEEccCCCCceEeeHHHHhhHHhcCCe---EEEEEECcc
Confidence 68999999999999887533 1 134457899999999999999887775 222333 344455443
Q ss_pred CCH-HHHHHHHHHHhcC----CCCCCCCHHHHHHHHHHHhc------CceEEEEecCCCCCCcccHHHHHhhh----c-C
Q 001995 258 FDD-IRIAKAILESLKG----SATNAVESETVLKQLRESIE------GKKFFLVLDDVWTEEPQNWEQLLGCL----R-C 321 (985)
Q Consensus 258 ~~~-~~~~~~i~~~l~~----~~~~~~~~~~~~~~l~~~l~------~k~~LlVlDdv~~~~~~~~~~l~~~l----~-~ 321 (985)
... .-.++.|.+++.. .........+....+-+.|+ +-++++|+|.++-.....-..+.-.+ . .
T Consensus 89 ~~~dk~al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~ 168 (408)
T KOG2228|consen 89 LQTDKIALKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSA 168 (408)
T ss_pred chhhHHHHHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhc
Confidence 332 2345556655542 21111122222333444442 34689999887543322222222222 1 2
Q ss_pred CCCCcEEEEEcCchh-------hHHhhcCcccccccCCCCChHHHHHHHHHHhc
Q 001995 322 GSKESRILVTTRNEK-------VAIAIGTTKFNIIPIELLSDEDCWSIFSQLAL 368 (985)
Q Consensus 322 ~~~gs~ilvTtR~~~-------v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~ 368 (985)
..+-+-|-+|||-.. |-..+... .++-+++++-++...++++...
T Consensus 169 r~Piciig~Ttrld~lE~LEKRVKSRFshr--~I~m~~~~~l~~yv~l~r~ll~ 220 (408)
T KOG2228|consen 169 RAPICIIGVTTRLDILELLEKRVKSRFSHR--VIFMLPSLPLGDYVDLYRKLLS 220 (408)
T ss_pred CCCeEEEEeeccccHHHHHHHHHHhhcccc--eeeccCCCChHHHHHHHHHHhc
Confidence 344556788999643 33334433 4666777888888888888653
No 217
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.68 E-value=0.0074 Score=59.89 Aligned_cols=38 Identities=32% Similarity=0.586 Sum_probs=30.2
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEE
Q 001995 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVC 253 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~ 253 (985)
....+|.|+|+.|+||||+|+.++. +....+..++++.
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~~ 42 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYLD 42 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEEe
Confidence 4556999999999999999999998 5555666666663
No 218
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.68 E-value=8e-05 Score=84.22 Aligned_cols=83 Identities=25% Similarity=0.333 Sum_probs=59.2
Q ss_pred cccccCCCCCeEecCCCCCccccchhhcCCCCCcEeeccCcccccccch-hhhhccccceeecccccccccccCCCcCCC
Q 001995 619 KGIKKLIHLRYLALGENPWIKELPEALCELCNLQTLDVSLCHYLKRLPE-RIGQLINLRHLMNSKEEWSRLSYMPRGMER 697 (985)
Q Consensus 619 ~~i~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~l~~lp~~i~~ 697 (985)
.++.-+++|+.|+|++|+ +...- .+..|++|++|||++|. +..+|. +...+. |+.|.+++|.... + .+|.+
T Consensus 181 ~SLqll~ale~LnLshNk-~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~-L~~L~lrnN~l~t---L-~gie~ 252 (1096)
T KOG1859|consen 181 ESLQLLPALESLNLSHNK-FTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGCK-LQLLNLRNNALTT---L-RGIEN 252 (1096)
T ss_pred HHHHHHHHhhhhccchhh-hhhhH-HHHhcccccccccccch-hccccccchhhhh-heeeeecccHHHh---h-hhHHh
Confidence 455667788888888888 66665 57788888888888887 777774 222333 8888888765432 2 47788
Q ss_pred CCCCCccCceEe
Q 001995 698 LTGLRTLGAFVA 709 (985)
Q Consensus 698 l~~L~~L~~~~~ 709 (985)
|++|+.|++..+
T Consensus 253 LksL~~LDlsyN 264 (1096)
T KOG1859|consen 253 LKSLYGLDLSYN 264 (1096)
T ss_pred hhhhhccchhHh
Confidence 888888887654
No 219
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.66 E-value=0.0084 Score=74.35 Aligned_cols=140 Identities=22% Similarity=0.274 Sum_probs=78.4
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 258 (985)
.++|-+..++.|...+....-+ -..+......+.++|+.|+|||+||+.+++ ..-+.-...+-++.++-.
T Consensus 510 ~v~GQ~~ai~~l~~~i~~~~~g--------l~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~--~l~~~~~~~~~~d~s~~~ 579 (821)
T CHL00095 510 RIIGQDEAVVAVSKAIRRARVG--------LKNPNRPIASFLFSGPTGVGKTELTKALAS--YFFGSEDAMIRLDMSEYM 579 (821)
T ss_pred cCcChHHHHHHHHHHHHHHhhc--------ccCCCCCceEEEEECCCCCcHHHHHHHHHH--HhcCCccceEEEEchhcc
Confidence 6899999999998888643200 001122345678999999999999999986 221111223344444322
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCce-EEEEecCCCCCCcccHHHHHhhhcCCC-----------CCc
Q 001995 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKK-FFLVLDDVWTEEPQNWEQLLGCLRCGS-----------KES 326 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~-~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs 326 (985)
+...+ .+ +.+.++.....++ ...+.+.++.++ .+++||++.....+.++.+...+..+. ..+
T Consensus 580 ~~~~~----~~-l~g~~~gyvg~~~-~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~ 653 (821)
T CHL00095 580 EKHTV----SK-LIGSPPGYVGYNE-GGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNT 653 (821)
T ss_pred ccccH----HH-hcCCCCcccCcCc-cchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCce
Confidence 21111 11 1122211111111 112334444444 589999998777777888888776531 344
Q ss_pred EEEEEcCc
Q 001995 327 RILVTTRN 334 (985)
Q Consensus 327 ~ilvTtR~ 334 (985)
-||+||..
T Consensus 654 i~I~Tsn~ 661 (821)
T CHL00095 654 LIIMTSNL 661 (821)
T ss_pred EEEEeCCc
Confidence 56777664
No 220
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.66 E-value=0.12 Score=56.90 Aligned_cols=214 Identities=15% Similarity=0.159 Sum_probs=126.2
Q ss_pred chhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHH-HHHhcchhhhccCCceEEEEeCCC---C
Q 001995 183 RNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLA-KLIFNDNEVRNHFNEKIWVCVSEP---F 258 (985)
Q Consensus 183 r~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~f~~~~wv~~~~~---~ 258 (985)
|.+..++|..||.... -..|.|.|+-|+||+.|+ .++..+.+ .++.+++.+- -
T Consensus 1 R~e~~~~L~~wL~e~~-----------------~TFIvV~GPrGSGK~elV~d~~L~~r~------~vL~IDC~~i~~ar 57 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENP-----------------NTFIVVQGPRGSGKRELVMDHVLKDRK------NVLVIDCDQIVKAR 57 (431)
T ss_pred CchHHHHHHHHHhcCC-----------------CeEEEEECCCCCCccHHHHHHHHhCCC------CEEEEEChHhhhcc
Confidence 6678899999998433 369999999999999999 77776422 2555554321 2
Q ss_pred CHHHHHHHHHHHhcCC-----------------------CCC--CCCHHHHHHH-------HHH----------------
Q 001995 259 DDIRIAKAILESLKGS-----------------------ATN--AVESETVLKQ-------LRE---------------- 290 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~-----------------------~~~--~~~~~~~~~~-------l~~---------------- 290 (985)
+...++..++.+++-- ... .....++... |++
T Consensus 58 ~D~~~I~~lA~qvGY~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~ 137 (431)
T PF10443_consen 58 GDAAFIKNLASQVGYFPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLK 137 (431)
T ss_pred ChHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccC
Confidence 3344455555544321 111 1111122111 111
Q ss_pred ---Hhc---CceEEEEecCCCCCCc---ccHHHHHh---hhcCCCCCcEEEEEcCchhhHH----hhcCcccccccCCCC
Q 001995 291 ---SIE---GKKFFLVLDDVWTEEP---QNWEQLLG---CLRCGSKESRILVTTRNEKVAI----AIGTTKFNIIPIELL 354 (985)
Q Consensus 291 ---~l~---~k~~LlVlDdv~~~~~---~~~~~l~~---~l~~~~~gs~ilvTtR~~~v~~----~~~~~~~~~~~l~~L 354 (985)
+|+ .++-+||+||.-.... ..|+.+.. .+ ...+-.+||++|-+..... .+....+..+.|...
T Consensus 138 e~~yl~~hPe~~PVVVIdnF~~k~~~~~~iy~~laeWAa~L-v~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Da 216 (431)
T PF10443_consen 138 EEDYLEAHPERRPVVVIDNFLHKAEENDFIYDKLAEWAASL-VQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDA 216 (431)
T ss_pred chhhhhhCCccCCEEEEcchhccCcccchHHHHHHHHHHHH-HhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCC
Confidence 111 2367899999854221 12222221 11 1234558999998765444 444445578899999
Q ss_pred ChHHHHHHHHHHhcCCCCCc-----------cc----chhHHHHHHHHHHhcCCChhHHHHHHhhhhcCCCh-HHHHHHH
Q 001995 355 SDEDCWSIFSQLALSRRLDI-----------EE----SENFENIGRQIVSKCKGLPLAVKTLGSLLRFKGKI-EEWQRVL 418 (985)
Q Consensus 355 ~~~e~~~Lf~~~~~~~~~~~-----------~~----~~~~~~~~~~I~~~~~GlPLai~~~~~~L~~~~~~-~~w~~~~ 418 (985)
+.+-|..+..++........ .. ......-....++.+||=-.-+..+++.++...++ +.-.++.
T Consensus 217 s~~~Ak~yV~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~~Av~~iI 296 (431)
T PF10443_consen 217 SPESAKQYVLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPEEAVEEII 296 (431)
T ss_pred CHHHHHHHHHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 99999999988875431100 00 01233445677889999999999999999877655 3444444
Q ss_pred Hh
Q 001995 419 EN 420 (985)
Q Consensus 419 ~~ 420 (985)
+.
T Consensus 297 ~q 298 (431)
T PF10443_consen 297 SQ 298 (431)
T ss_pred HH
Confidence 44
No 221
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.66 E-value=0.0075 Score=68.50 Aligned_cols=187 Identities=17% Similarity=0.248 Sum_probs=111.8
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 258 (985)
++||-+.-...|...+..+. -..--...|+-|+||||+|+-++.. + .+ .-| ....++
T Consensus 17 evvGQe~v~~~L~nal~~~r----------------i~hAYlfsG~RGvGKTt~Ari~Aka--l--NC--~~~-~~~ePC 73 (515)
T COG2812 17 DVVGQEHVVKTLSNALENGR----------------IAHAYLFSGPRGVGKTTIARILAKA--L--NC--ENG-PTAEPC 73 (515)
T ss_pred HhcccHHHHHHHHHHHHhCc----------------chhhhhhcCCCCcCchhHHHHHHHH--h--cC--CCC-CCCCcc
Confidence 68999999999999998544 2334567899999999999988752 1 01 001 111122
Q ss_pred CHHHHHHHHHHHhcC-----CCCCCCCHHHHHHHHHHHh-----cCceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEE
Q 001995 259 DDIRIAKAILESLKG-----SATNAVESETVLKQLRESI-----EGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRI 328 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~-----~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 328 (985)
..-..-+.|-..-.. +.......+++ +.+.+.. +++-=+.|+|.|+......|..++..+.........
T Consensus 74 ~~C~~Ck~I~~g~~~DviEiDaASn~gVddi-R~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~F 152 (515)
T COG2812 74 GKCISCKEINEGSLIDVIEIDAASNTGVDDI-REIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKF 152 (515)
T ss_pred hhhhhhHhhhcCCcccchhhhhhhccChHHH-HHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEE
Confidence 222222222221000 00011122222 2233332 355668999999888888999999988866666666
Q ss_pred EEEcCchh-hHHh-hcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChh
Q 001995 329 LVTTRNEK-VAIA-IGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPL 396 (985)
Q Consensus 329 lvTtR~~~-v~~~-~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPL 396 (985)
|+.|.+.+ +... ..-. +.|.++.++.++....+...+...... ...+....|++..+|..-
T Consensus 153 IlATTe~~Kip~TIlSRc--q~f~fkri~~~~I~~~L~~i~~~E~I~-----~e~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 153 ILATTEPQKIPNTILSRC--QRFDFKRLDLEEIAKHLAAILDKEGIN-----IEEDALSLIARAAEGSLR 215 (515)
T ss_pred EEecCCcCcCchhhhhcc--ccccccCCCHHHHHHHHHHHHHhcCCc-----cCHHHHHHHHHHcCCChh
Confidence 66666543 3222 2222 689999999999988888876544332 223456667777777544
No 222
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.62 E-value=0.0042 Score=67.46 Aligned_cols=102 Identities=21% Similarity=0.277 Sum_probs=56.8
Q ss_pred EEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCce
Q 001995 217 TIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKK 296 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 296 (985)
.-+.++|..|+|||+||..+++. ....-..++++++.. ++..+...-. . ...+.... .+.+. .-
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~--l~~~g~~V~y~t~~~------l~~~l~~~~~-~--~~~~~~~~----~~~l~-~~ 247 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKE--LLDRGKSVIYRTADE------LIEILREIRF-N--NDKELEEV----YDLLI-NC 247 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHH--HHHCCCeEEEEEHHH------HHHHHHHHHh-c--cchhHHHH----HHHhc-cC
Confidence 56999999999999999999984 333333566776432 3333322111 1 11111111 12222 22
Q ss_pred EEEEecCCCCCCcccH--HHHHhhhcCC-CCCcEEEEEcCc
Q 001995 297 FFLVLDDVWTEEPQNW--EQLLGCLRCG-SKESRILVTTRN 334 (985)
Q Consensus 297 ~LlVlDdv~~~~~~~~--~~l~~~l~~~-~~gs~ilvTtR~ 334 (985)
=||||||+.......| ..+...+... ..+-.+||||..
T Consensus 248 DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 248 DLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred CEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 4899999965544444 3344444322 234468888874
No 223
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.59 E-value=0.0024 Score=66.87 Aligned_cols=82 Identities=21% Similarity=0.239 Sum_probs=50.3
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcC
Q 001995 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEG 294 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 294 (985)
+..-+.++|.+|+|||.||.++.+. ....-..+.++++ .++..++...... . .....+.+.+ .
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~--l~~~g~sv~f~~~------~el~~~Lk~~~~~----~----~~~~~l~~~l-~ 166 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNE--LLKAGISVLFITA------PDLLSKLKAAFDE----G----RLEEKLLREL-K 166 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEEEH------HHHHHHHHHHHhc----C----chHHHHHHHh-h
Confidence 4457999999999999999999994 4332234666654 3455555554432 1 1122222222 2
Q ss_pred ceEEEEecCCCCCCcccHH
Q 001995 295 KKFFLVLDDVWTEEPQNWE 313 (985)
Q Consensus 295 k~~LlVlDdv~~~~~~~~~ 313 (985)
+-=||||||+--.....|.
T Consensus 167 ~~dlLIiDDlG~~~~~~~~ 185 (254)
T COG1484 167 KVDLLIIDDIGYEPFSQEE 185 (254)
T ss_pred cCCEEEEecccCccCCHHH
Confidence 3348999999765555554
No 224
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.59 E-value=0.02 Score=65.57 Aligned_cols=102 Identities=20% Similarity=0.327 Sum_probs=64.0
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 258 (985)
+-+|.++-+++|++++.-+. -.++-+-++++.+|++|||||.+|+.++. .....|- -++++.-.
T Consensus 412 DHYgm~dVKeRILEfiAV~k-----------Lrgs~qGkIlCf~GPPGVGKTSI~kSIA~--ALnRkFf---RfSvGG~t 475 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAVGK-----------LRGSVQGKILCFVGPPGVGKTSIAKSIAR--ALNRKFF---RFSVGGMT 475 (906)
T ss_pred cccchHHHHHHHHHHHHHHh-----------hcccCCCcEEEEeCCCCCCcccHHHHHHH--HhCCceE---EEeccccc
Confidence 67899999999999997543 12245668999999999999999999997 3333331 13444444
Q ss_pred CHHHHHHHHHHHhcCC--CCCCCCHHHHHHHHHHHhcCceEEEEecCCC
Q 001995 259 DDIRIAKAILESLKGS--ATNAVESETVLKQLRESIEGKKFFLVLDDVW 305 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~--~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~ 305 (985)
|..++ .+. ..-..-...++..++.. +-..-|+.+|.|+
T Consensus 476 DvAeI--------kGHRRTYVGAMPGkiIq~LK~v-~t~NPliLiDEvD 515 (906)
T KOG2004|consen 476 DVAEI--------KGHRRTYVGAMPGKIIQCLKKV-KTENPLILIDEVD 515 (906)
T ss_pred cHHhh--------cccceeeeccCChHHHHHHHhh-CCCCceEEeehhh
Confidence 43332 121 11122234444444443 3345678888884
No 225
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.58 E-value=0.0066 Score=71.03 Aligned_cols=43 Identities=30% Similarity=0.467 Sum_probs=35.6
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhc
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
+++|.+..++.+...+... ...-|.|+|+.|+|||++|+.+++
T Consensus 66 ~iiGqs~~i~~l~~al~~~-----------------~~~~vLi~Ge~GtGKt~lAr~i~~ 108 (531)
T TIGR02902 66 EIIGQEEGIKALKAALCGP-----------------NPQHVIIYGPPGVGKTAAARLVLE 108 (531)
T ss_pred HeeCcHHHHHHHHHHHhCC-----------------CCceEEEECCCCCCHHHHHHHHHH
Confidence 6899999999998876522 234568999999999999999976
No 226
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.55 E-value=0.014 Score=60.73 Aligned_cols=89 Identities=19% Similarity=0.200 Sum_probs=54.3
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhccC------CceEEEEeCCCCCHHHHHHHHHHHhcCCC---------CCC
Q 001995 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRNHF------NEKIWVCVSEPFDDIRIAKAILESLKGSA---------TNA 278 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f------~~~~wv~~~~~~~~~~~~~~i~~~l~~~~---------~~~ 278 (985)
+.-.++.|+|.+|+|||+||.+++... ...- ..++|++....++...+. .+.+...... ...
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~~~--~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~ 93 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVEA--QLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARP 93 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHHHh--hcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeC
Confidence 455799999999999999999987632 2222 457899987777765443 3333322110 111
Q ss_pred CCHHHHHHHHHHHhc----CceEEEEecCCC
Q 001995 279 VESETVLKQLRESIE----GKKFFLVLDDVW 305 (985)
Q Consensus 279 ~~~~~~~~~l~~~l~----~k~~LlVlDdv~ 305 (985)
.+.+++...+.+... .+.-|+|+|.+.
T Consensus 94 ~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 94 YNGEQQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred CCHHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 234444444444432 345588888873
No 227
>PRK04132 replication factor C small subunit; Provisional
Probab=96.55 E-value=0.043 Score=66.57 Aligned_cols=154 Identities=14% Similarity=0.063 Sum_probs=95.9
Q ss_pred cCCchHHHHHHHHhcchhhhccCC-ceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEec
Q 001995 224 MGGIGKTTLAKLIFNDNEVRNHFN-EKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLD 302 (985)
Q Consensus 224 ~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlD 302 (985)
+.++||||+|..++++. ..+.+. .++-+++++..+.. ..++++..+....+. -..+.-++|+|
T Consensus 574 Ph~lGKTT~A~ala~~l-~g~~~~~~~lElNASd~rgid-~IR~iIk~~a~~~~~--------------~~~~~KVvIID 637 (846)
T PRK04132 574 PTVLHNTTAALALAREL-FGENWRHNFLELNASDERGIN-VIREKVKEFARTKPI--------------GGASFKIIFLD 637 (846)
T ss_pred CCcccHHHHHHHHHHhh-hcccccCeEEEEeCCCcccHH-HHHHHHHHHHhcCCc--------------CCCCCEEEEEE
Confidence 77899999999999842 122232 35667777654443 334444433211110 01245799999
Q ss_pred CCCCCCcccHHHHHhhhcCCCCCcEEEEEcCch-hhHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHH
Q 001995 303 DVWTEEPQNWEQLLGCLRCGSKESRILVTTRNE-KVAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFE 381 (985)
Q Consensus 303 dv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~ 381 (985)
+++.......+.++..+.......++|++|.+. .+...... ....+.+.+++.++....+...+...+.. . ..
T Consensus 638 EaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrS-RC~~i~F~~ls~~~i~~~L~~I~~~Egi~--i---~~ 711 (846)
T PRK04132 638 EADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQS-RCAIFRFRPLRDEDIAKRLRYIAENEGLE--L---TE 711 (846)
T ss_pred CcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhh-hceEEeCCCCCHHHHHHHHHHHHHhcCCC--C---CH
Confidence 998877777888888887655566666665543 33222221 12689999999999888877655322211 1 13
Q ss_pred HHHHHHHHhcCCChhHHH
Q 001995 382 NIGRQIVSKCKGLPLAVK 399 (985)
Q Consensus 382 ~~~~~I~~~~~GlPLai~ 399 (985)
+....|++.++|.+-...
T Consensus 712 e~L~~Ia~~s~GDlR~AI 729 (846)
T PRK04132 712 EGLQAILYIAEGDMRRAI 729 (846)
T ss_pred HHHHHHHHHcCCCHHHHH
Confidence 467889999999885443
No 228
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.54 E-value=0.012 Score=61.43 Aligned_cols=56 Identities=21% Similarity=0.252 Sum_probs=39.0
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhcc----CCceEEEEeCCCCCHHHHHHHHHHH
Q 001995 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRNH----FNEKIWVCVSEPFDDIRIAKAILES 270 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~i~~~ 270 (985)
+.-.++.|+|.+|+|||++|.+++........ -..++|++....++...+ .++++.
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl-~~~~~~ 76 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL-VQIAER 76 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH-HHHHHH
Confidence 35579999999999999999999753222221 357899998887765444 334443
No 229
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.51 E-value=0.011 Score=60.93 Aligned_cols=44 Identities=18% Similarity=0.223 Sum_probs=32.7
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCC
Q 001995 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFD 259 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 259 (985)
..-.++.|+|.+|+||||+|.+++.. ....-..++|++....+.
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~--~~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVE--TAGQGKKVAYIDTEGLSS 60 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCCCCH
Confidence 45689999999999999999999873 322334577887655543
No 230
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.46 E-value=0.00016 Score=81.82 Aligned_cols=22 Identities=27% Similarity=0.297 Sum_probs=16.0
Q ss_pred CcccccCCCCCeEecCCCCCccc
Q 001995 618 PKGIKKLIHLRYLALGENPWIKE 640 (985)
Q Consensus 618 p~~i~~l~~Lr~L~L~~~~~i~~ 640 (985)
|-.|..+..||.|.|++|. +..
T Consensus 102 pi~ifpF~sLr~LElrg~~-L~~ 123 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCD-LST 123 (1096)
T ss_pred CceeccccceeeEEecCcc-hhh
Confidence 5567777888888888887 544
No 231
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.45 E-value=0.026 Score=69.34 Aligned_cols=188 Identities=18% Similarity=0.169 Sum_probs=93.8
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 258 (985)
++.|.+..+++|.+++...-. ++.... ..+-...+-|.|+|++|.|||+||+.+++. ....| +.++.+.
T Consensus 179 di~G~~~~~~~l~~~i~~~~~-~~~~~~---~~gi~~~~giLL~GppGtGKT~laraia~~--~~~~~---i~i~~~~-- 247 (733)
T TIGR01243 179 DIGGLKEAKEKIREMVELPMK-HPELFE---HLGIEPPKGVLLYGPPGTGKTLLAKAVANE--AGAYF---ISINGPE-- 247 (733)
T ss_pred HhcCHHHHHHHHHHHHHHHhh-CHHHHH---hcCCCCCceEEEECCCCCChHHHHHHHHHH--hCCeE---EEEecHH--
Confidence 588999999999887753210 000000 000123456889999999999999999883 32222 2222111
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCCC-----------cccHHHHHhhhcCC-CCCc
Q 001995 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTEE-----------PQNWEQLLGCLRCG-SKES 326 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-----------~~~~~~l~~~l~~~-~~gs 326 (985)
+ .... .......+...+.......+.+|+||++.... ......+...+... ..+.
T Consensus 248 ----i----~~~~-----~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~ 314 (733)
T TIGR01243 248 ----I----MSKY-----YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGR 314 (733)
T ss_pred ----H----hccc-----ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCC
Confidence 1 1110 01112223333444445677899999984311 01122343333321 2233
Q ss_pred EEEE-EcCchh-hHHhhcC--cccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChh
Q 001995 327 RILV-TTRNEK-VAIAIGT--TKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPL 396 (985)
Q Consensus 327 ~ilv-TtR~~~-v~~~~~~--~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPL 396 (985)
.++| ||.... +...+.. .-...+.+...+.++-.+++..+...... ... .....+++.+.|.--
T Consensus 315 vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l--~~d----~~l~~la~~t~G~~g 382 (733)
T TIGR01243 315 VIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPL--AED----VDLDKLAEVTHGFVG 382 (733)
T ss_pred EEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCC--ccc----cCHHHHHHhCCCCCH
Confidence 3444 444322 2222211 00135677777888888888755422211 111 124567777877653
No 232
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.45 E-value=0.00075 Score=67.76 Aligned_cols=85 Identities=22% Similarity=0.250 Sum_probs=47.5
Q ss_pred hccCCcceeecCCC--C-----CCCCcccccCCCCCeEecCCCC--C-ccccch-------hhcCCCCCcEeeccCcccc
Q 001995 600 FDRLTCLRSIDGLP--V-----GQIPKGIKKLIHLRYLALGENP--W-IKELPE-------ALCELCNLQTLDVSLCHYL 662 (985)
Q Consensus 600 ~~~l~~Lr~L~l~~--~-----~~lp~~i~~l~~Lr~L~L~~~~--~-i~~lp~-------~i~~L~~L~~L~l~~~~~l 662 (985)
+..+..+..++|++ + ..+-+.|.+-.+|+.-+++.-. . ..++|+ .+-+|++|+..+|+.|..-
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 33466667777772 1 1233445566667777665432 0 112332 2446777777777777654
Q ss_pred cccchh----hhhccccceeeccccc
Q 001995 663 KRLPER----IGQLINLRHLMNSKEE 684 (985)
Q Consensus 663 ~~lp~~----i~~L~~L~~L~l~~~~ 684 (985)
...|+. |++-+.|.||.+++|+
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCC
Confidence 555543 4455677777777543
No 233
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.40 E-value=0.014 Score=70.49 Aligned_cols=125 Identities=16% Similarity=0.202 Sum_probs=70.8
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 258 (985)
.++|-++.++.|...+.....+ -..+......+.++|+.|+|||++|+.++.. .. ...+.+++++-.
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~g--------l~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~--l~---~~~i~id~se~~ 525 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAG--------LGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA--LG---IELLRFDMSEYM 525 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhcc--------ccCCCCCcceEEEECCCCCCHHHHHHHHHHH--hC---CCcEEeechhhc
Confidence 5899999999998888743200 0001223467899999999999999999873 32 123344444322
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc-CceEEEEecCCCCCCcccHHHHHhhhcCC
Q 001995 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESIE-GKKFFLVLDDVWTEEPQNWEQLLGCLRCG 322 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~~~~~~~l~~~l~~~ 322 (985)
... . ...+-+.+......+ ....+.+.+. ....+|+||++.....+.++.+...+..+
T Consensus 526 ~~~----~-~~~LiG~~~gyvg~~-~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~G 584 (758)
T PRK11034 526 ERH----T-VSRLIGAPPGYVGFD-QGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNG 584 (758)
T ss_pred ccc----c-HHHHcCCCCCccccc-ccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhcC
Confidence 111 1 122223221111100 0112223333 33469999999877777777787776543
No 234
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.40 E-value=0.038 Score=67.96 Aligned_cols=187 Identities=17% Similarity=0.202 Sum_probs=95.6
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 258 (985)
++.|.+..+++|.+.+...-... ..... .+-...+-+.++|++|.|||++|+.+++. ....| +.+...
T Consensus 454 di~g~~~~k~~l~~~v~~~~~~~-~~~~~---~g~~~~~giLL~GppGtGKT~lakalA~e--~~~~f-----i~v~~~- 521 (733)
T TIGR01243 454 DIGGLEEVKQELREAVEWPLKHP-EIFEK---MGIRPPKGVLLFGPPGTGKTLLAKAVATE--SGANF-----IAVRGP- 521 (733)
T ss_pred hcccHHHHHHHHHHHHHhhhhCH-HHHHh---cCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE-----EEEehH-
Confidence 57888888888877664211000 00000 00123456899999999999999999983 33222 222210
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCC--------Cc----ccHHHHHhhhcC--CCC
Q 001995 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTE--------EP----QNWEQLLGCLRC--GSK 324 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--------~~----~~~~~l~~~l~~--~~~ 324 (985)
+++... .......+...+...-+..+.+|+||+++.. .. .....+...+.. ...
T Consensus 522 -------~l~~~~-----vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~ 589 (733)
T TIGR01243 522 -------EILSKW-----VGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELS 589 (733)
T ss_pred -------HHhhcc-----cCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCC
Confidence 111111 1112223333333444567899999998431 00 111223333332 223
Q ss_pred CcEEEEEcCchhhH-HhhcC--cccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCCh
Q 001995 325 ESRILVTTRNEKVA-IAIGT--TKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLP 395 (985)
Q Consensus 325 gs~ilvTtR~~~v~-~~~~~--~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlP 395 (985)
+.-||.||...+.. ..+-. .-...+.+...+.++-.++|+.+...... ....+ ...+++.+.|.-
T Consensus 590 ~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~--~~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 590 NVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPL--AEDVD----LEELAEMTEGYT 657 (733)
T ss_pred CEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCC--CccCC----HHHHHHHcCCCC
Confidence 44566677554422 22211 11146778888888888888765533221 11112 355667777654
No 235
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.40 E-value=0.015 Score=56.74 Aligned_cols=40 Identities=28% Similarity=0.389 Sum_probs=29.5
Q ss_pred EEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCC
Q 001995 218 IISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFD 259 (985)
Q Consensus 218 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 259 (985)
++.|+|.+|+||||++..+... ....-..++|++......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALN--IATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHH--HHhcCCEEEEEECCcchH
Confidence 4689999999999999999873 333334577887765543
No 236
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.38 E-value=0.0036 Score=59.19 Aligned_cols=108 Identities=19% Similarity=0.257 Sum_probs=63.7
Q ss_pred ecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhh-hccCCceEEEEeCCCCC
Q 001995 181 RGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEV-RNHFNEKIWVCVSEPFD 259 (985)
Q Consensus 181 vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~f~~~~wv~~~~~~~ 259 (985)
||+...++++.+.+..-. ....-|.|+|..|+||+++|+.++..... ...|.. +.+..
T Consensus 1 vG~S~~~~~l~~~l~~~a---------------~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~---~~~~~--- 59 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLA---------------KSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIV---IDCAS--- 59 (138)
T ss_dssp --SCHHHHHHHHHHHHHH---------------CSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCC---CCHHC---
T ss_pred CCCCHHHHHHHHHHHHHh---------------CCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEE---echhh---
Confidence 577777888877776433 23346799999999999999988874221 111211 01111
Q ss_pred HHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCCCcccHHHHHhhhcC-CCCCcEEEEEcCch
Q 001995 260 DIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTEEPQNWEQLLGCLRC-GSKESRILVTTRNE 335 (985)
Q Consensus 260 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~ilvTtR~~ 335 (985)
.+ .+.+.+ .+.--|+|+|+..-.......+...+.. .....|+|.||...
T Consensus 60 -------------------~~----~~~l~~---a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 60 -------------------LP----AELLEQ---AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp -------------------TC----HHHHHH---CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred -------------------Cc----HHHHHH---cCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 00 111111 1444578999977666666777777763 35677999999854
No 237
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.38 E-value=0.03 Score=61.07 Aligned_cols=104 Identities=11% Similarity=0.173 Sum_probs=55.9
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCC-CCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc
Q 001995 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEP-FDDIRIAKAILESLKGSATNAVESETVLKQLRESIE 293 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 293 (985)
+.++|+|+|++|+||||++..++.. ....=..+..+..... ....+-++...+.++..-....+...+...+...-.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~--L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~ 317 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQ--FHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 317 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHH--HHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHh
Confidence 4579999999999999999999873 3222223445554322 123333444444443322223345555555544322
Q ss_pred -CceEEEEecCCCCCC--cccHHHHHhhhc
Q 001995 294 -GKKFFLVLDDVWTEE--PQNWEQLLGCLR 320 (985)
Q Consensus 294 -~k~~LlVlDdv~~~~--~~~~~~l~~~l~ 320 (985)
.+.=++++|-.-... ......+...+.
T Consensus 318 ~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk 347 (436)
T PRK11889 318 EARVDYILIDTAGKNYRASETVEEMIETMG 347 (436)
T ss_pred ccCCCEEEEeCccccCcCHHHHHHHHHHHh
Confidence 123577888774422 233455555444
No 238
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.35 E-value=0.0037 Score=67.56 Aligned_cols=50 Identities=18% Similarity=0.271 Sum_probs=41.1
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcc
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFND 239 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 239 (985)
+++|.++.++++++++..... ......+++.|+|++|+||||||+.+++.
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~-----------g~~~~r~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQ-----------GLEERKQILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHh-----------cCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 699999999999999975431 00235689999999999999999999884
No 239
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.33 E-value=0.0012 Score=62.62 Aligned_cols=89 Identities=25% Similarity=0.309 Sum_probs=48.9
Q ss_pred EEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEE
Q 001995 219 ISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFF 298 (985)
Q Consensus 219 v~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~L 298 (985)
|.|+|++|+|||+||+.++. .... ...-+.++...+..++....--. .+. .......+...+ .+..+
T Consensus 2 vlL~G~~G~GKt~l~~~la~--~~~~---~~~~i~~~~~~~~~dl~g~~~~~-~~~--~~~~~~~l~~a~-----~~~~i 68 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAA--LLGR---PVIRINCSSDTTEEDLIGSYDPS-NGQ--FEFKDGPLVRAM-----RKGGI 68 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHH--HHTC---EEEEEE-TTTSTHHHHHCEEET--TTT--TCEEE-CCCTTH-----HEEEE
T ss_pred EEEECCCCCCHHHHHHHHHH--Hhhc---ceEEEEeccccccccceeeeeec-ccc--cccccccccccc-----cceeE
Confidence 68999999999999999997 3311 23345677777766654332211 000 000000010001 17899
Q ss_pred EEecCCCCCCcccHHHHHhhhc
Q 001995 299 LVLDDVWTEEPQNWEQLLGCLR 320 (985)
Q Consensus 299 lVlDdv~~~~~~~~~~l~~~l~ 320 (985)
+|||++.......+..+...+.
T Consensus 69 l~lDEin~a~~~v~~~L~~ll~ 90 (139)
T PF07728_consen 69 LVLDEINRAPPEVLESLLSLLE 90 (139)
T ss_dssp EEESSCGG--HHHHHTTHHHHS
T ss_pred EEECCcccCCHHHHHHHHHHHh
Confidence 9999997555555555555554
No 240
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.33 E-value=0.0084 Score=59.91 Aligned_cols=132 Identities=18% Similarity=0.224 Sum_probs=64.2
Q ss_pred cchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCC--CC
Q 001995 182 GRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEP--FD 259 (985)
Q Consensus 182 Gr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~ 259 (985)
.+..+....++.|.. ..+|.+.|++|.|||.||.+.+-+.-..+.|+.++++.-.-. .+
T Consensus 4 p~~~~Q~~~~~al~~-------------------~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~ 64 (205)
T PF02562_consen 4 PKNEEQKFALDALLN-------------------NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGED 64 (205)
T ss_dssp --SHHHHHHHHHHHH--------------------SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT--
T ss_pred CCCHHHHHHHHHHHh-------------------CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccc
Confidence 456667777777762 249999999999999999998876555688888777642111 00
Q ss_pred -------HH----HHHHHHHHHhcCCCCCCCCHHHHHHH------HHHHhcCc---eEEEEecCCCCCCcccHHHHHhhh
Q 001995 260 -------DI----RIAKAILESLKGSATNAVESETVLKQ------LRESIEGK---KFFLVLDDVWTEEPQNWEQLLGCL 319 (985)
Q Consensus 260 -------~~----~~~~~i~~~l~~~~~~~~~~~~~~~~------l~~~l~~k---~~LlVlDdv~~~~~~~~~~l~~~l 319 (985)
.. -....+...+..-- .....+.+... -..+++|+ ..+||+|++.+....++.. .+
T Consensus 65 lGflpG~~~eK~~p~~~p~~d~l~~~~-~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~---il 140 (205)
T PF02562_consen 65 LGFLPGDLEEKMEPYLRPIYDALEELF-GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKM---IL 140 (205)
T ss_dssp --SS---------TTTHHHHHHHTTTS--TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHH---HH
T ss_pred cccCCCCHHHHHHHHHHHHHHHHHHHh-ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHH---HH
Confidence 00 01111111111100 11112222110 00233443 4699999996655544444 45
Q ss_pred cCCCCCcEEEEEcCchh
Q 001995 320 RCGSKESRILVTTRNEK 336 (985)
Q Consensus 320 ~~~~~gs~ilvTtR~~~ 336 (985)
...+.|||||++--..+
T Consensus 141 TR~g~~skii~~GD~~Q 157 (205)
T PF02562_consen 141 TRIGEGSKIIITGDPSQ 157 (205)
T ss_dssp TTB-TT-EEEEEE----
T ss_pred cccCCCcEEEEecCcee
Confidence 55678999999876544
No 241
>PRK06696 uridine kinase; Validated
Probab=96.33 E-value=0.0041 Score=64.27 Aligned_cols=43 Identities=28% Similarity=0.449 Sum_probs=35.6
Q ss_pred cchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhc
Q 001995 182 GRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 182 Gr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
.|++-+++|.+.+.... .++..+|+|.|.+|+||||+|+.+..
T Consensus 2 ~~~~~~~~la~~~~~~~--------------~~~~~iI~I~G~sgsGKSTlA~~L~~ 44 (223)
T PRK06696 2 SRKQLIKELAEHILTLN--------------LTRPLRVAIDGITASGKTTFADELAE 44 (223)
T ss_pred cHHHHHHHHHHHHHHhC--------------CCCceEEEEECCCCCCHHHHHHHHHH
Confidence 36677788888887533 35678999999999999999999997
No 242
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.22 E-value=0.015 Score=66.82 Aligned_cols=90 Identities=18% Similarity=0.286 Sum_probs=60.8
Q ss_pred CCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh
Q 001995 213 TQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESI 292 (985)
Q Consensus 213 ~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 292 (985)
.+.-++..++|++|.||||||+-+++.. -| .++=|++|+.-+...+-..|...+........
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkqa----GY-sVvEINASDeRt~~~v~~kI~~avq~~s~l~a------------- 384 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQA----GY-SVVEINASDERTAPMVKEKIENAVQNHSVLDA------------- 384 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHhc----Cc-eEEEecccccccHHHHHHHHHHHHhhcccccc-------------
Confidence 3566899999999999999999998732 22 46678888877777776666665543321111
Q ss_pred cCceEEEEecCCCCCCcccHHHHHhhhc
Q 001995 293 EGKKFFLVLDDVWTEEPQNWEQLLGCLR 320 (985)
Q Consensus 293 ~~k~~LlVlDdv~~~~~~~~~~l~~~l~ 320 (985)
.+++.-||+|.++.......+.++..+.
T Consensus 385 dsrP~CLViDEIDGa~~~~Vdvilslv~ 412 (877)
T KOG1969|consen 385 DSRPVCLVIDEIDGAPRAAVDVILSLVK 412 (877)
T ss_pred CCCcceEEEecccCCcHHHHHHHHHHHH
Confidence 2678899999997654333444444443
No 243
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.22 E-value=0.06 Score=51.85 Aligned_cols=61 Identities=11% Similarity=0.146 Sum_probs=39.8
Q ss_pred HHHHHHHHHhcCceEEEEecCCC-C-CCcccHHHHHhhhcCCCCCcEEEEEcCchhhHHhhcC
Q 001995 283 TVLKQLRESIEGKKFFLVLDDVW-T-EEPQNWEQLLGCLRCGSKESRILVTTRNEKVAIAIGT 343 (985)
Q Consensus 283 ~~~~~l~~~l~~k~~LlVlDdv~-~-~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~~ 343 (985)
+-.-.+.+.+-+++-+|+=|.-- + +....|+-+.-+-.-+..|.-||++|-+..+.+.+..
T Consensus 143 QQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~ 205 (223)
T COG2884 143 QQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRH 205 (223)
T ss_pred HHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccC
Confidence 33444667777889999988532 1 2233555544333345678899999999988777654
No 244
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.21 E-value=0.0029 Score=58.30 Aligned_cols=21 Identities=48% Similarity=0.638 Sum_probs=20.0
Q ss_pred EEEEEccCCchHHHHHHHHhc
Q 001995 218 IISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 218 vv~I~G~gGiGKTtLa~~v~~ 238 (985)
+|+|+|++|+||||+|+.+++
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 245
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.19 E-value=0.013 Score=61.27 Aligned_cols=88 Identities=22% Similarity=0.280 Sum_probs=54.4
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCc-eEEEEeCCCCC-HHHHHHHHHHHhcCC-------CCCCCCHHH--
Q 001995 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNE-KIWVCVSEPFD-DIRIAKAILESLKGS-------ATNAVESET-- 283 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~-~~wv~~~~~~~-~~~~~~~i~~~l~~~-------~~~~~~~~~-- 283 (985)
+-+.++|.|..|+||||||+.+++ .++.+|.. ++++-+.+... +.++...+...-... ..+......
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~--~i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 145 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELIN--NIAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARAR 145 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHH--HHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 446899999999999999999998 45545544 55666665543 345555554421111 111111111
Q ss_pred ---HHHHHHHHh--c-CceEEEEecCC
Q 001995 284 ---VLKQLRESI--E-GKKFFLVLDDV 304 (985)
Q Consensus 284 ---~~~~l~~~l--~-~k~~LlVlDdv 304 (985)
..-.+.+++ + ++.+|+++||+
T Consensus 146 ~~~~a~~~AEyfr~~~g~~Vl~~~Dsl 172 (274)
T cd01133 146 VALTGLTMAEYFRDEEGQDVLLFIDNI 172 (274)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeCh
Confidence 222345555 3 89999999999
No 246
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=96.19 E-value=0.03 Score=61.39 Aligned_cols=129 Identities=16% Similarity=0.146 Sum_probs=69.9
Q ss_pred eecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCC
Q 001995 180 IRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFD 259 (985)
Q Consensus 180 ~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 259 (985)
++|+...++++.+.+.... ....-|.|+|..|+||+++|+.+++..... . ..-+-|++....
T Consensus 1 liG~S~~m~~~~~~~~~~a---------------~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~-~-~pfv~vnc~~~~- 62 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLA---------------PLDRPVLIIGERGTGKELIAARLHYLSKRW-Q-GPLVKLNCAALS- 62 (329)
T ss_pred CCcCCHHHHHHHHHHHHHh---------------CCCCCEEEECCCCChHHHHHHHHHHhcCcc-C-CCeEEEeCCCCC-
Confidence 4688888888888776543 223468999999999999999998632111 1 122334444322
Q ss_pred HHHHHHHHHHHhcCCCCC---CCCHHHHHHHHHHHhcCceEEEEecCCCCCCcccHHHHHhhhcCCC-----------CC
Q 001995 260 DIRIAKAILESLKGSATN---AVESETVLKQLRESIEGKKFFLVLDDVWTEEPQNWEQLLGCLRCGS-----------KE 325 (985)
Q Consensus 260 ~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~g 325 (985)
...+...+ .+.... ...... ...+. ....-.|+||++..........+...+..+. ..
T Consensus 63 -~~~l~~~l---fG~~~g~~~ga~~~~-~G~~~---~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~ 134 (329)
T TIGR02974 63 -ENLLDSEL---FGHEAGAFTGAQKRH-QGRFE---RADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVD 134 (329)
T ss_pred -hHHHHHHH---hccccccccCccccc-CCchh---hCCCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccc
Confidence 12222211 111100 000000 00011 1234458999997766666666777665332 23
Q ss_pred cEEEEEcCc
Q 001995 326 SRILVTTRN 334 (985)
Q Consensus 326 s~ilvTtR~ 334 (985)
.|||.||..
T Consensus 135 ~RiI~at~~ 143 (329)
T TIGR02974 135 VRLVCATNA 143 (329)
T ss_pred eEEEEechh
Confidence 478888753
No 247
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.18 E-value=0.014 Score=69.23 Aligned_cols=155 Identities=21% Similarity=0.266 Sum_probs=87.1
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhh-ccCC-----ceEEE
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVR-NHFN-----EKIWV 252 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-~~f~-----~~~wv 252 (985)
-++||++|++++++.|.+.. .+++ .++|.+|||||++|.-++. ++. +.-+ ..++.
T Consensus 171 PvIGRd~EI~r~iqIL~RR~--------------KNNP---vLiGEpGVGKTAIvEGLA~--rIv~g~VP~~L~~~~i~s 231 (786)
T COG0542 171 PVIGRDEEIRRTIQILSRRT--------------KNNP---VLVGEPGVGKTAIVEGLAQ--RIVNGDVPESLKDKRIYS 231 (786)
T ss_pred CCcChHHHHHHHHHHHhccC--------------CCCC---eEecCCCCCHHHHHHHHHH--HHhcCCCCHHHcCCEEEE
Confidence 37899999999999998654 1222 5789999999998877776 322 1111 11111
Q ss_pred EeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCC---------CcccHHHHHhhhcCCC
Q 001995 253 CVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTE---------EPQNWEQLLGCLRCGS 323 (985)
Q Consensus 253 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~---------~~~~~~~l~~~l~~~~ 323 (985)
-++..-+.+......=.+.+...+.+.-+.++..|++|.++.. ..+.-+-+.+.|..+
T Consensus 232 ------------LD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARG- 298 (786)
T COG0542 232 ------------LDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARG- 298 (786)
T ss_pred ------------ecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcC-
Confidence 1222233344333333333444444443455899999998531 122223344444332
Q ss_pred CCcEEEEEcCchhhHHhhc-----CcccccccCCCCChHHHHHHHHHH
Q 001995 324 KESRILVTTRNEKVAIAIG-----TTKFNIIPIELLSDEDCWSIFSQL 366 (985)
Q Consensus 324 ~gs~ilvTtR~~~v~~~~~-----~~~~~~~~l~~L~~~e~~~Lf~~~ 366 (985)
.--.|--||-++ .-..+. ...++.+.+..-+.+++...++-.
T Consensus 299 eL~~IGATT~~E-YRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 299 ELRCIGATTLDE-YRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred CeEEEEeccHHH-HHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHH
Confidence 222355555443 221111 113468889999999998888753
No 248
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.16 E-value=0.015 Score=56.78 Aligned_cols=131 Identities=23% Similarity=0.282 Sum_probs=67.4
Q ss_pred eecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCC
Q 001995 180 IRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFD 259 (985)
Q Consensus 180 ~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 259 (985)
++|.+..+.++++.+.... ....-|.|+|..|.||+.+|+.+++.... .. ..-+-|+++. .+
T Consensus 1 liG~s~~m~~~~~~~~~~a---------------~~~~pVlI~GE~GtGK~~lA~~IH~~s~r-~~-~pfi~vnc~~-~~ 62 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAA---------------SSDLPVLITGETGTGKELLARAIHNNSPR-KN-GPFISVNCAA-LP 62 (168)
T ss_dssp SS--SHHHHHHHHHHHHHT---------------TSTS-EEEECSTTSSHHHHHHHHHHCSTT-TT-S-EEEEETTT-S-
T ss_pred CEeCCHHHHHHHHHHHHHh---------------CCCCCEEEEcCCCCcHHHHHHHHHHhhhc-cc-CCeEEEehhh-hh
Confidence 4788888888888887543 12245779999999999999999984211 11 1122344442 23
Q ss_pred HHHHHHHHHHHhcCCCCCC--CCHHHHHHHHHHHhcCceEEEEecCCCCCCcccHHHHHhhhcCC------C-----CCc
Q 001995 260 DIRIAKAILESLKGSATNA--VESETVLKQLRESIEGKKFFLVLDDVWTEEPQNWEQLLGCLRCG------S-----KES 326 (985)
Q Consensus 260 ~~~~~~~i~~~l~~~~~~~--~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~------~-----~gs 326 (985)
.+.+-..+.-...+..... .... .+.. ...=-|+||++.+.....-..|...+..+ . ...
T Consensus 63 ~~~~e~~LFG~~~~~~~~~~~~~~G----~l~~---A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~ 135 (168)
T PF00158_consen 63 EELLESELFGHEKGAFTGARSDKKG----LLEQ---ANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDV 135 (168)
T ss_dssp HHHHHHHHHEBCSSSSTTTSSEBEH----HHHH---TTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--E
T ss_pred cchhhhhhhccccccccccccccCC----ceee---ccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccc
Confidence 3333223222211111111 1111 1111 23346789999776655556666666422 1 245
Q ss_pred EEEEEcCch
Q 001995 327 RILVTTRNE 335 (985)
Q Consensus 327 ~ilvTtR~~ 335 (985)
|||.||...
T Consensus 136 RiI~st~~~ 144 (168)
T PF00158_consen 136 RIIASTSKD 144 (168)
T ss_dssp EEEEEESS-
T ss_pred eEEeecCcC
Confidence 888888753
No 249
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.14 E-value=0.024 Score=61.02 Aligned_cols=85 Identities=22% Similarity=0.250 Sum_probs=55.7
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCC-----CCCCCHHHHHHHH
Q 001995 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSA-----TNAVESETVLKQL 288 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l 288 (985)
+.-+++-|+|++|+||||||.+++.. ....-..++|++..+.++.. .+++++.+. ......++....+
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~--~~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~ 125 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA 125 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 45689999999999999999998774 32333457899877666553 344444321 1223455555555
Q ss_pred HHHhc-CceEEEEecCCC
Q 001995 289 RESIE-GKKFFLVLDDVW 305 (985)
Q Consensus 289 ~~~l~-~k~~LlVlDdv~ 305 (985)
....+ +..-++|+|.|-
T Consensus 126 ~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHHhhccCCcEEEEcchh
Confidence 55443 457799999983
No 250
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=96.11 E-value=0.04 Score=60.45 Aligned_cols=134 Identities=16% Similarity=0.130 Sum_probs=73.6
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 258 (985)
.++|+...++++.+.+.... ....-|.|+|..|+||+++|+.+...... .-..-+.|++....
T Consensus 7 ~liG~S~~~~~~~~~i~~~a---------------~~~~pVlI~GE~GtGK~~lA~~iH~~s~r--~~~pfv~v~c~~~~ 69 (326)
T PRK11608 7 NLLGEANSFLEVLEQVSRLA---------------PLDKPVLIIGERGTGKELIASRLHYLSSR--WQGPFISLNCAALN 69 (326)
T ss_pred ccEECCHHHHHHHHHHHHHh---------------CCCCCEEEECCCCCcHHHHHHHHHHhCCc--cCCCeEEEeCCCCC
Confidence 68999999999988887544 22346899999999999999999862111 11122344555422
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCCCcccHHHHHhhhcCCC-----------CCcE
Q 001995 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTEEPQNWEQLLGCLRCGS-----------KESR 327 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ 327 (985)
...+...+...-.+... ..... ....+. ....=.|+||||..........+...+..+. ...|
T Consensus 70 -~~~~~~~lfg~~~~~~~-g~~~~-~~g~l~---~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~R 143 (326)
T PRK11608 70 -ENLLDSELFGHEAGAFT-GAQKR-HPGRFE---RADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVR 143 (326)
T ss_pred -HHHHHHHHccccccccC-Ccccc-cCCchh---ccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEE
Confidence 22222222211100000 00000 001111 1222357899998776666777777765322 1358
Q ss_pred EEEEcCch
Q 001995 328 ILVTTRNE 335 (985)
Q Consensus 328 ilvTtR~~ 335 (985)
||.||...
T Consensus 144 iI~~s~~~ 151 (326)
T PRK11608 144 LVCATNAD 151 (326)
T ss_pred EEEeCchh
Confidence 88887643
No 251
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=96.10 E-value=0.088 Score=49.62 Aligned_cols=84 Identities=11% Similarity=0.147 Sum_probs=67.9
Q ss_pred ChHHHHHHHHHHHHhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhccc-CcHHHHHHHHHHHHhhhchhhH
Q 001995 1 MAEAIVSTILEQLALILVEQTAAGVRLIAGAEEEVENLHRRFHLIKAVVEDAEKRQM-KETAVRVWLDDLKHASYDMEDV 79 (985)
Q Consensus 1 ma~~~~~~~~~kl~~~~~~~~~~e~~~~~~~~~~~~~L~~~l~~i~~~l~~a~~~~~-~~~~~~~wl~~l~~~~yd~ed~ 79 (985)
+|+.+++++++...+.+...+.+.......++.-+++|..+++.|..++++.+.... -+..-+.-+++|.+...+++++
T Consensus 2 ~~eL~~gaalG~~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~L 81 (147)
T PF05659_consen 2 IAELVGGAALGAVFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKEL 81 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHH
Confidence 367777777777777666688888888889999999999999999999999987532 2222367789999999999999
Q ss_pred HHHHH
Q 001995 80 LDEWN 84 (985)
Q Consensus 80 ld~~~ 84 (985)
+..|.
T Consensus 82 V~k~s 86 (147)
T PF05659_consen 82 VEKCS 86 (147)
T ss_pred HHHhc
Confidence 99875
No 252
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.10 E-value=0.024 Score=55.30 Aligned_cols=80 Identities=20% Similarity=0.273 Sum_probs=45.3
Q ss_pred EEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcC--c
Q 001995 218 IISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEG--K 295 (985)
Q Consensus 218 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~--k 295 (985)
++.|.|..|+|||++|.++... ....++++.-...++. +....|.+.....+ ......+....+.+.+.. +
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~-em~~rI~~H~~~R~-~~w~t~E~~~~l~~~l~~~~~ 73 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDD-EMAERIARHRKRRP-AHWRTIETPRDLVSALKELDP 73 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCH-HHHHHHHHHHHhCC-CCceEeecHHHHHHHHHhcCC
Confidence 3679999999999999999762 2235677776666654 34444444322222 112111222233333321 2
Q ss_pred eEEEEecCC
Q 001995 296 KFFLVLDDV 304 (985)
Q Consensus 296 ~~LlVlDdv 304 (985)
.-.+++|.+
T Consensus 74 ~~~VLIDcl 82 (169)
T cd00544 74 GDVVLIDCL 82 (169)
T ss_pred CCEEEEEcH
Confidence 347999986
No 253
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.08 E-value=0.027 Score=60.59 Aligned_cols=85 Identities=21% Similarity=0.236 Sum_probs=55.8
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCC-----CCCCCHHHHHHHH
Q 001995 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSA-----TNAVESETVLKQL 288 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l 288 (985)
+.-+++-|+|++|+||||||.+++.. ....-..++|++....++.. .+++++.+. ....+.+++...+
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~~--~~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIAE--AQKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHH
Confidence 45679999999999999999998763 33334468899887766653 344443321 1223455555555
Q ss_pred HHHhc-CceEEEEecCCC
Q 001995 289 RESIE-GKKFFLVLDDVW 305 (985)
Q Consensus 289 ~~~l~-~k~~LlVlDdv~ 305 (985)
....+ +..-++|+|.|-
T Consensus 126 ~~li~s~~~~lIVIDSva 143 (325)
T cd00983 126 DSLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHHhccCCCEEEEcchH
Confidence 55443 457799999973
No 254
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.05 E-value=0.023 Score=60.84 Aligned_cols=88 Identities=16% Similarity=0.184 Sum_probs=47.0
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCC-CCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc
Q 001995 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEP-FDDIRIAKAILESLKGSATNAVESETVLKQLRESIE 293 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 293 (985)
...+++|+|++|+||||++..++.....+..-..+..|+.... ......+....+.++.......+...+...+... .
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~-~ 271 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRL-R 271 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHc-c
Confidence 4679999999999999999998873222211124555655431 1222333333333333222223444444444433 3
Q ss_pred CceEEEEecCC
Q 001995 294 GKKFFLVLDDV 304 (985)
Q Consensus 294 ~k~~LlVlDdv 304 (985)
+ .=+|++|..
T Consensus 272 ~-~d~vliDt~ 281 (282)
T TIGR03499 272 D-KDLILIDTA 281 (282)
T ss_pred C-CCEEEEeCC
Confidence 3 346777753
No 255
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.05 E-value=0.041 Score=57.42 Aligned_cols=87 Identities=20% Similarity=0.277 Sum_probs=54.8
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCC------------------
Q 001995 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSA------------------ 275 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------------------ 275 (985)
+.-+++.|+|.+|+|||++|.++.... .+ .=..++|++..+. ..++.+++ ++++-..
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~-~~-~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGA-LK-QGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHH-Hh-CCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEeccccc
Confidence 456899999999999999999996531 22 2346888888653 44555543 2332110
Q ss_pred --CCCCCHHHHHHHHHHHhcC-ceEEEEecCCC
Q 001995 276 --TNAVESETVLKQLRESIEG-KKFFLVLDDVW 305 (985)
Q Consensus 276 --~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~ 305 (985)
......+.+...+.+.+.. +.-++|+|.+-
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0112335566666666653 56689999974
No 256
>PRK09354 recA recombinase A; Provisional
Probab=96.05 E-value=0.029 Score=60.87 Aligned_cols=85 Identities=21% Similarity=0.249 Sum_probs=57.1
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCC-----CCCCCHHHHHHHH
Q 001995 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSA-----TNAVESETVLKQL 288 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l 288 (985)
+.-+++-|+|++|+||||||.+++... ...-..++||+....++.. .+++++.+. ......++....+
T Consensus 58 p~G~IteI~G~~GsGKTtLal~~~~~~--~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~ 130 (349)
T PRK09354 58 PRGRIVEIYGPESSGKTTLALHAIAEA--QKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIA 130 (349)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 456899999999999999999988743 2333568899888777653 344444321 1223455555555
Q ss_pred HHHhc-CceEEEEecCCC
Q 001995 289 RESIE-GKKFFLVLDDVW 305 (985)
Q Consensus 289 ~~~l~-~k~~LlVlDdv~ 305 (985)
...++ +..-+||+|.|-
T Consensus 131 ~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 131 DTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHHhhcCCCCEEEEeChh
Confidence 55543 457799999984
No 257
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.03 E-value=0.024 Score=56.97 Aligned_cols=88 Identities=15% Similarity=0.181 Sum_probs=51.1
Q ss_pred CEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeC-CCCCHHHHHHHHHHHhcCCC---CCCCCHHHHH-HHHHH
Q 001995 216 PTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVS-EPFDDIRIAKAILESLKGSA---TNAVESETVL-KQLRE 290 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~l~~~~---~~~~~~~~~~-~~l~~ 290 (985)
++++.++|+.|+||||.+.+++.. .+..=..+..++.. ......+.++..++.++..- ....+..++. +.+.+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~--~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAAR--LKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHH--HHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHH--HhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 379999999999999998888874 33333346677764 33455677777788776431 2222333333 23333
Q ss_pred HhcCceEEEEecCCC
Q 001995 291 SIEGKKFFLVLDDVW 305 (985)
Q Consensus 291 ~l~~k~~LlVlDdv~ 305 (985)
.-..+-=++++|=.-
T Consensus 79 ~~~~~~D~vlIDT~G 93 (196)
T PF00448_consen 79 FRKKGYDLVLIDTAG 93 (196)
T ss_dssp HHHTTSSEEEEEE-S
T ss_pred HhhcCCCEEEEecCC
Confidence 222233467777653
No 258
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.02 E-value=0.051 Score=59.77 Aligned_cols=90 Identities=13% Similarity=0.162 Sum_probs=51.9
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCC-CCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc
Q 001995 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSE-PFDDIRIAKAILESLKGSATNAVESETVLKQLRESIE 293 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 293 (985)
+..++.++|+.|+||||++.+++.....+.....+..++... .....+.++...+.++.......+..++...+. .+.
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~-~l~ 214 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALA-ELR 214 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHH-Hhc
Confidence 346999999999999999999987322121123455555432 234455666666666543322223333333333 334
Q ss_pred CceEEEEecCCCC
Q 001995 294 GKKFFLVLDDVWT 306 (985)
Q Consensus 294 ~k~~LlVlDdv~~ 306 (985)
++ =++++|..-.
T Consensus 215 ~~-DlVLIDTaG~ 226 (374)
T PRK14722 215 NK-HMVLIDTIGM 226 (374)
T ss_pred CC-CEEEEcCCCC
Confidence 44 5566998853
No 259
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.01 E-value=0.0018 Score=58.41 Aligned_cols=54 Identities=30% Similarity=0.443 Sum_probs=28.2
Q ss_pred CCCeEecCCCCCccccchhhcCCCCCcEeeccCcccccccchhhhhccccceeecc
Q 001995 626 HLRYLALGENPWIKELPEALCELCNLQTLDVSLCHYLKRLPERIGQLINLRHLMNS 681 (985)
Q Consensus 626 ~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~ 681 (985)
-+..|+|++|. +..+|.++..++.|+.|+++.|+ +...|.-|..|.+|-.|+..
T Consensus 78 t~t~lNl~~ne-isdvPeE~Aam~aLr~lNl~~N~-l~~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 78 TATTLNLANNE-ISDVPEELAAMPALRSLNLRFNP-LNAEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred hhhhhhcchhh-hhhchHHHhhhHHhhhcccccCc-cccchHHHHHHHhHHHhcCC
Confidence 44555555555 55555555555555555555554 44555555555555555444
No 260
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.00 E-value=0.084 Score=58.67 Aligned_cols=104 Identities=9% Similarity=0.089 Sum_probs=58.3
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhc--cCCceEEEEeCCCCC--HHHHHHHHHHHhcCCCCCCCCHHHHHHHHH
Q 001995 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRN--HFNEKIWVCVSEPFD--DIRIAKAILESLKGSATNAVESETVLKQLR 289 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~--~f~~~~wv~~~~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 289 (985)
....+|.++|+.|+||||.+..++....... +-..+..+++. .+. ....++...+.++.+-......+.+...+.
T Consensus 172 ~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~D-t~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~ 250 (388)
T PRK12723 172 LKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITID-NYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEIT 250 (388)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecc-CccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHH
Confidence 3467999999999999999998886322211 11234455544 333 233355555555443223334455554444
Q ss_pred HHhcCceEEEEecCCCCCC--cccHHHHHhhhc
Q 001995 290 ESIEGKKFFLVLDDVWTEE--PQNWEQLLGCLR 320 (985)
Q Consensus 290 ~~l~~k~~LlVlDdv~~~~--~~~~~~l~~~l~ 320 (985)
+. ...-++++|-+.... ......+...+.
T Consensus 251 ~~--~~~DlVLIDTaGr~~~~~~~l~el~~~l~ 281 (388)
T PRK12723 251 QS--KDFDLVLVDTIGKSPKDFMKLAEMKELLN 281 (388)
T ss_pred Hh--CCCCEEEEcCCCCCccCHHHHHHHHHHHH
Confidence 43 446688999885432 123345555544
No 261
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.98 E-value=0.038 Score=52.84 Aligned_cols=117 Identities=18% Similarity=0.206 Sum_probs=65.2
Q ss_pred EEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEe---CCCCCHHHHHHHHHHHhc----CCC--CCCCCHHH----
Q 001995 217 TIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCV---SEPFDDIRIAKAILESLK----GSA--TNAVESET---- 283 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~---~~~~~~~~~~~~i~~~l~----~~~--~~~~~~~~---- 283 (985)
..|-|++..|.||||+|...+- +..++=..+.++.+ ........+++.+ ..+. +.. ....+..+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~--ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLAL--RALGHGYRVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 4788888899999999988776 33333223444333 2233444444433 1110 000 00011111
Q ss_pred ---HHHHHHHHhc-CceEEEEecCCCC---CCcccHHHHHhhhcCCCCCcEEEEEcCchh
Q 001995 284 ---VLKQLRESIE-GKKFFLVLDDVWT---EEPQNWEQLLGCLRCGSKESRILVTTRNEK 336 (985)
Q Consensus 284 ---~~~~l~~~l~-~k~~LlVlDdv~~---~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~ 336 (985)
..+..++.+. +.-=|||||++-. ...-..+.+...+.....+.-||+|.|+..
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 2222333443 3456999999832 223455677777777777788999999854
No 262
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.95 E-value=0.032 Score=58.73 Aligned_cols=57 Identities=21% Similarity=0.306 Sum_probs=40.5
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhcc----CCceEEEEeCCCCCHHHHHHHHHHHhc
Q 001995 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNH----FNEKIWVCVSEPFDDIRIAKAILESLK 272 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~i~~~l~ 272 (985)
.-.+.=|+|.+|+|||+||..++-...+... =..++|++....|+...+. +|++...
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~ 97 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFG 97 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTT
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccc
Confidence 4469999999999999999887653333221 2348999999989887765 4666543
No 263
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.92 E-value=0.015 Score=56.92 Aligned_cols=80 Identities=19% Similarity=0.270 Sum_probs=44.0
Q ss_pred EEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCC---CCHHHHHHHHHHHhcC
Q 001995 218 IISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNA---VESETVLKQLRESIEG 294 (985)
Q Consensus 218 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~l~~~l~~ 294 (985)
++.|.|.+|+||||+|..+... .. ...+++.....+ ..+..+.|.......+..- .....+...+.....+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~--~~---~~~~~iat~~~~-~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~~ 76 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQ--SG---LQVLYIATAQPF-DDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAP 76 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHH--cC---CCcEeCcCCCCC-hHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcCC
Confidence 6899999999999999998863 11 123444444433 3445555544443222111 1112234444443332
Q ss_pred ceEEEEecCC
Q 001995 295 KKFFLVLDDV 304 (985)
Q Consensus 295 k~~LlVlDdv 304 (985)
.-++++|.+
T Consensus 77 -~~~VlID~L 85 (170)
T PRK05800 77 -GRCVLVDCL 85 (170)
T ss_pred -CCEEEehhH
Confidence 337889986
No 264
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.87 E-value=0.044 Score=60.72 Aligned_cols=25 Identities=24% Similarity=0.309 Sum_probs=22.1
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcc
Q 001995 215 RPTIISITGMGGIGKTTLAKLIFND 239 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~ 239 (985)
...++.++|++|+||||+|..++..
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~ 246 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAK 246 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999863
No 265
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.87 E-value=0.11 Score=58.70 Aligned_cols=89 Identities=17% Similarity=0.141 Sum_probs=48.3
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCC-CCCHHHHHHHHHHHhcCCCC---CCCCHHHHHHHHH
Q 001995 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSE-PFDDIRIAKAILESLKGSAT---NAVESETVLKQLR 289 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~ 289 (985)
..+.+|.++|.+|+||||.|..++.. ....-..+.-|++.. .....+.++.+..+++.... ...+...+.....
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~--L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al 170 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARY--FKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGL 170 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 35789999999999999999999873 332212344444432 12234455666666543211 1122222222222
Q ss_pred HHhcCceEEEEecCCC
Q 001995 290 ESIEGKKFFLVLDDVW 305 (985)
Q Consensus 290 ~~l~~k~~LlVlDdv~ 305 (985)
+.+.+. -++|+|-.-
T Consensus 171 ~~~~~~-DvVIIDTAG 185 (437)
T PRK00771 171 EKFKKA-DVIIVDTAG 185 (437)
T ss_pred HHhhcC-CEEEEECCC
Confidence 233333 567777763
No 266
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.85 E-value=0.017 Score=58.40 Aligned_cols=111 Identities=11% Similarity=0.215 Sum_probs=59.4
Q ss_pred EEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHH-HHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCc
Q 001995 217 TIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDI-RIAKAILESLKGSATNAVESETVLKQLRESIEGK 295 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 295 (985)
.+|.|+|+.|+||||++..+.. .........++.-- ++.... .-...++.+- ....+.....+.++..+...
T Consensus 2 GlilI~GptGSGKTTll~~ll~--~~~~~~~~~i~t~e-~~~E~~~~~~~~~i~q~----~vg~~~~~~~~~i~~aLr~~ 74 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMID--YINKNKTHHILTIE-DPIEFVHESKRSLINQR----EVGLDTLSFENALKAALRQD 74 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHH--HhhhcCCcEEEEEc-CCccccccCccceeeec----ccCCCccCHHHHHHHHhcCC
Confidence 4799999999999999998876 33333334444322 211100 0000111110 00111223455677777777
Q ss_pred eEEEEecCCCCCCcccHHHHHhhhcCCCCCcEEEEEcCchhhHH
Q 001995 296 KFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRILVTTRNEKVAI 339 (985)
Q Consensus 296 ~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~ 339 (985)
+=++++|.+.+ .+......... ..|..++.|+-...+..
T Consensus 75 pd~ii~gEird--~e~~~~~l~~a---~~G~~v~~t~Ha~~~~~ 113 (198)
T cd01131 75 PDVILVGEMRD--LETIRLALTAA---ETGHLVMSTLHTNSAAK 113 (198)
T ss_pred cCEEEEcCCCC--HHHHHHHHHHH---HcCCEEEEEecCCcHHH
Confidence 88999999953 33333333322 23556777776655543
No 267
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.85 E-value=0.0015 Score=76.79 Aligned_cols=43 Identities=14% Similarity=0.026 Sum_probs=25.9
Q ss_pred cccccceeecccccCCCCCCC-C-CCCCCcCeEEecCchhhhhhh
Q 001995 913 MPRLRHLSICWSPELKALPDY-I-LGSTSLDKLLIYYSRHLNNRY 955 (985)
Q Consensus 913 lp~L~~L~i~~c~~L~~lp~~-~-~~l~~L~~L~i~~c~~l~~~~ 955 (985)
++.|+.|++..|...+.--.. . ..+..+..+.+.+|+.++...
T Consensus 400 ~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~ 444 (482)
T KOG1947|consen 400 SDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLKS 444 (482)
T ss_pred CCccceEecccCccccccchHHHhhhhhccccCCccCcccccchh
Confidence 334788888887665542110 0 115667778888888776543
No 268
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.83 E-value=0.093 Score=52.16 Aligned_cols=120 Identities=19% Similarity=0.174 Sum_probs=65.5
Q ss_pred CEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeC--CCCCHHHH------HHHHHHHhcCCC-----CCCCCHH
Q 001995 216 PTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVS--EPFDDIRI------AKAILESLKGSA-----TNAVESE 282 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~--~~~~~~~~------~~~i~~~l~~~~-----~~~~~~~ 282 (985)
-.+++|+|..|.|||||++.++.. .......+++.-. ...+.... ..++++.++... .......
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~---~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G 101 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGL---LKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGG 101 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC---CCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHH
Confidence 359999999999999999999873 2233444444211 11122221 122444443321 1112222
Q ss_pred H-HHHHHHHHhcCceEEEEecCCCC-CCcccHHHHHhhhcCC-CC-CcEEEEEcCchhhH
Q 001995 283 T-VLKQLRESIEGKKFFLVLDDVWT-EEPQNWEQLLGCLRCG-SK-ESRILVTTRNEKVA 338 (985)
Q Consensus 283 ~-~~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~-gs~ilvTtR~~~v~ 338 (985)
+ ..-.+.+.+-..+-++++|+.-. .+....+.+...+... .. +.-||++|.+....
T Consensus 102 ~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 102 ERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 2 22335566677888999998742 2333444455544422 12 56788888876654
No 269
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.83 E-value=0.068 Score=55.03 Aligned_cols=125 Identities=15% Similarity=0.172 Sum_probs=72.8
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCC-----CCCHHHHHHHHHHHhcCCC------CCCCCHHH
Q 001995 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSE-----PFDDIRIAKAILESLKGSA------TNAVESET 283 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-----~~~~~~~~~~i~~~l~~~~------~~~~~~~~ 283 (985)
+-.+++|+|..|.||||+++.+.. ....-...+++.-.+ .....+...++++.++... +...+..+
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~---L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILG---LEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHc---CcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 345899999999999999999986 333334445544221 2223345566666665332 22233333
Q ss_pred HHH-HHHHHhcCceEEEEecCCCCC-Cc---ccHHHHHhhhcCCCCCcEEEEEcCchhhHHhhcC
Q 001995 284 VLK-QLRESIEGKKFFLVLDDVWTE-EP---QNWEQLLGCLRCGSKESRILVTTRNEKVAIAIGT 343 (985)
Q Consensus 284 ~~~-~l~~~l~~k~~LlVlDdv~~~-~~---~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~~ 343 (985)
.+. .+.+.|.-++-++|.|..-+. +. .+.-.+...+.. ..|-..+.-|-+-.+...+..
T Consensus 115 rQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~-~~~lt~lFIsHDL~vv~~isd 178 (268)
T COG4608 115 RQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQE-ELGLTYLFISHDLSVVRYISD 178 (268)
T ss_pred hhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHH-HhCCeEEEEEEEHHhhhhhcc
Confidence 333 356777889999999986432 11 112223333332 234557777777777666554
No 270
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.83 E-value=0.038 Score=55.70 Aligned_cols=105 Identities=16% Similarity=0.171 Sum_probs=53.5
Q ss_pred EEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh----
Q 001995 217 TIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESI---- 292 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l---- 292 (985)
+++.|.|.+|.||||+++.+... .... ...+.+.......... +.+..+.. ...... .+....
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~--~~~~-g~~v~~~apT~~Aa~~----L~~~~~~~---a~Ti~~---~l~~~~~~~~ 85 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEA--LEAA-GKRVIGLAPTNKAAKE----LREKTGIE---AQTIHS---FLYRIPNGDD 85 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHH--HHHT-T--EEEEESSHHHHHH----HHHHHTS----EEEHHH---HTTEECCEEC
T ss_pred eEEEEEECCCCCHHHHHHHHHHH--HHhC-CCeEEEECCcHHHHHH----HHHhhCcc---hhhHHH---HHhcCCcccc
Confidence 68999999999999999998763 3332 2333333332222222 22222211 000100 000000
Q ss_pred -----cCceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEEEEEcCchh
Q 001995 293 -----EGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRILVTTRNEK 336 (985)
Q Consensus 293 -----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~ 336 (985)
..+.-+||+|++...+...+..+....+. .|+|+|+.--..+
T Consensus 86 ~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~~Q 132 (196)
T PF13604_consen 86 EGRPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDPNQ 132 (196)
T ss_dssp CSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-TTS
T ss_pred cccccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCcch
Confidence 12345999999977666667666666554 4778887655443
No 271
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.82 E-value=0.07 Score=50.75 Aligned_cols=105 Identities=17% Similarity=0.149 Sum_probs=58.7
Q ss_pred CEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCH-HHHHHHHHHHhcC
Q 001995 216 PTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVES-ETVLKQLRESIEG 294 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~-~~~~~~l~~~l~~ 294 (985)
-.+++|+|..|.|||||++.+.... ......+|+.-.. .+.-.. + .+. +...-.+.+.+-.
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~~~~-------------~i~~~~-~-lS~G~~~rv~laral~~ 87 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGEL---EPDEGIVTWGSTV-------------KIGYFE-Q-LSGGEKMRLALAKLLLE 87 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCC---CCCceEEEECCeE-------------EEEEEc-c-CCHHHHHHHHHHHHHhc
Confidence 3599999999999999999998732 2223344442100 000000 0 111 1222234556667
Q ss_pred ceEEEEecCCCC-CCcccHHHHHhhhcCCCCCcEEEEEcCchhhHHh
Q 001995 295 KKFFLVLDDVWT-EEPQNWEQLLGCLRCGSKESRILVTTRNEKVAIA 340 (985)
Q Consensus 295 k~~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~ 340 (985)
++-++++|+.-. .+......+...+... +..||++|.+......
T Consensus 88 ~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~ 132 (144)
T cd03221 88 NPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQ 132 (144)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHH
Confidence 778999998742 2334445555555433 2358888877665543
No 272
>PRK14974 cell division protein FtsY; Provisional
Probab=95.82 E-value=0.074 Score=57.90 Aligned_cols=101 Identities=16% Similarity=0.223 Sum_probs=53.3
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhc-cCCceEEEEeCCCC--CHHHHHHHHHHHhcCCC---CCCCCHHHH-HH
Q 001995 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRN-HFNEKIWVCVSEPF--DDIRIAKAILESLKGSA---TNAVESETV-LK 286 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~---~~~~~~~~~-~~ 286 (985)
.++.++.++|++|+||||++..++.. ... .+ .++.+.. +.+ .....++.....++... ....+...+ ..
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~--l~~~g~-~V~li~~-Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ 213 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYY--LKKNGF-SVVIAAG-DTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYD 213 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH--HHHcCC-eEEEecC-CcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHH
Confidence 35689999999999999988888863 322 23 3334432 222 23344555666665321 112222222 23
Q ss_pred HHHHHhcCceEEEEecCCCCC--CcccHHHHHhh
Q 001995 287 QLRESIEGKKFFLVLDDVWTE--EPQNWEQLLGC 318 (985)
Q Consensus 287 ~l~~~l~~k~~LlVlDdv~~~--~~~~~~~l~~~ 318 (985)
.+........=++++|-+... +...++.+...
T Consensus 214 ai~~~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i 247 (336)
T PRK14974 214 AIEHAKARGIDVVLIDTAGRMHTDANLMDELKKI 247 (336)
T ss_pred HHHHHHhCCCCEEEEECCCccCCcHHHHHHHHHH
Confidence 333222222238999988543 22334444433
No 273
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.79 E-value=0.0085 Score=55.86 Aligned_cols=31 Identities=39% Similarity=0.525 Sum_probs=24.5
Q ss_pred CEEEEEEccCCchHHHHHHHHhcchhhhcc-CCc
Q 001995 216 PTIISITGMGGIGKTTLAKLIFNDNEVRNH-FNE 248 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-f~~ 248 (985)
.--|+|+|++|+||||+++.+.+ ..+.. |..
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e--~L~~~g~kv 36 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAE--KLREKGYKV 36 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHH--HHHhcCcee
Confidence 34689999999999999999998 34333 654
No 274
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.79 E-value=0.092 Score=56.22 Aligned_cols=56 Identities=25% Similarity=0.301 Sum_probs=38.6
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcC
Q 001995 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKG 273 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 273 (985)
.-.++.|.|.+|+||||++.+++... ...+=..++|++... +..++...+...+.+
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~-~~~~g~~vl~iS~E~--~~~~~~~r~~~~~~~ 84 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDL-ITQHGVRVGTISLEE--PVVRTARRLLGQYAG 84 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH-HHhcCceEEEEEccc--CHHHHHHHHHHHHhC
Confidence 34589999999999999999987742 122124578888765 455666666665443
No 275
>PRK08233 hypothetical protein; Provisional
Probab=95.76 E-value=0.028 Score=56.01 Aligned_cols=23 Identities=39% Similarity=0.567 Sum_probs=21.3
Q ss_pred CEEEEEEccCCchHHHHHHHHhc
Q 001995 216 PTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
..+|+|.|.+|+||||+|+.++.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~ 25 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTH 25 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 37999999999999999999987
No 276
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=95.73 E-value=0.055 Score=64.07 Aligned_cols=133 Identities=18% Similarity=0.182 Sum_probs=73.5
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 258 (985)
.++|....++++.+.+.... ....-|.|+|..|+|||++|+.+++.... .-..-+.|++..-.
T Consensus 197 ~liG~s~~~~~~~~~~~~~a---------------~~~~pvli~Ge~GtGK~~lA~~ih~~s~r--~~~pfv~i~c~~~~ 259 (534)
T TIGR01817 197 GIIGKSPAMRQVVDQARVVA---------------RSNSTVLLRGESGTGKELIAKAIHYLSPR--AKRPFVKVNCAALS 259 (534)
T ss_pred ceEECCHHHHHHHHHHHHHh---------------CcCCCEEEECCCCccHHHHHHHHHHhCCC--CCCCeEEeecCCCC
Confidence 79999999999998887543 22345789999999999999999874211 11122344544322
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCCCcccHHHHHhhhcCCC-----------CCcE
Q 001995 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTEEPQNWEQLLGCLRCGS-----------KESR 327 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ 327 (985)
+ ..+.. .+.+......... .............-.|+||+|..........+...+..+. ...|
T Consensus 260 ~--~~~~~---~lfg~~~~~~~~~-~~~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~r 333 (534)
T TIGR01817 260 E--TLLES---ELFGHEKGAFTGA-IAQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVR 333 (534)
T ss_pred H--HHHHH---HHcCCCCCccCCC-CcCCCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEE
Confidence 1 22222 1212110000000 0000000001233458899998776666777777775432 1247
Q ss_pred EEEEcCc
Q 001995 328 ILVTTRN 334 (985)
Q Consensus 328 ilvTtR~ 334 (985)
||.||..
T Consensus 334 iI~~s~~ 340 (534)
T TIGR01817 334 LVAATNR 340 (534)
T ss_pred EEEeCCC
Confidence 8888754
No 277
>PHA02244 ATPase-like protein
Probab=95.72 E-value=0.07 Score=57.94 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=19.4
Q ss_pred EEEEEccCCchHHHHHHHHhc
Q 001995 218 IISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 218 vv~I~G~gGiGKTtLa~~v~~ 238 (985)
-|.|+|+.|+|||+||+.+++
T Consensus 121 PVLL~GppGtGKTtLA~aLA~ 141 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAE 141 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 478899999999999999997
No 278
>PRK07667 uridine kinase; Provisional
Probab=95.71 E-value=0.021 Score=57.54 Aligned_cols=25 Identities=28% Similarity=0.414 Sum_probs=22.7
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhc
Q 001995 214 QRPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
++..+|+|.|.+|+||||+|+.+..
T Consensus 15 ~~~~iIgI~G~~gsGKStla~~L~~ 39 (193)
T PRK07667 15 ENRFILGIDGLSRSGKTTFVANLKE 39 (193)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4558999999999999999999987
No 279
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.67 E-value=0.019 Score=57.36 Aligned_cols=78 Identities=21% Similarity=0.315 Sum_probs=44.7
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHH--hcCCCCCCCCHHHHHHHHHHH
Q 001995 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILES--LKGSATNAVESETVLKQLRES 291 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~--l~~~~~~~~~~~~~~~~l~~~ 291 (985)
.++.+|+|.|.+|+||||+|+.++. ..+... ++-++...-+. ..-.....+. .....+...+.+-+.+.|...
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~--~~~~~~--~~~I~~D~YYk-~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L 80 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSE--QLGVEK--VVVISLDDYYK-DQSHLPFEERNKINYDHPEAFDLDLLIEHLKDL 80 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHH--HhCcCc--ceEeecccccc-chhhcCHhhcCCcCccChhhhcHHHHHHHHHHH
Confidence 3568999999999999999999998 444331 12122111110 0000111111 112234456677778888888
Q ss_pred hcCce
Q 001995 292 IEGKK 296 (985)
Q Consensus 292 l~~k~ 296 (985)
+++++
T Consensus 81 ~~g~~ 85 (218)
T COG0572 81 KQGKP 85 (218)
T ss_pred HcCCc
Confidence 88877
No 280
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.67 E-value=0.042 Score=59.44 Aligned_cols=59 Identities=19% Similarity=0.191 Sum_probs=42.3
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhh----ccCCceEEEEeCCCCCHHHHHHHHHHHhcC
Q 001995 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVR----NHFNEKIWVCVSEPFDDIRIAKAILESLKG 273 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 273 (985)
+.-+++-|+|.+|+|||+|+..++-..... ..=..++||+....|+++.+.+ +++.++.
T Consensus 94 ~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~ 156 (313)
T TIGR02238 94 ESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGV 156 (313)
T ss_pred cCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 455799999999999999998876432221 1113589999988888887654 5666543
No 281
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.64 E-value=0.075 Score=52.76 Aligned_cols=117 Identities=18% Similarity=0.115 Sum_probs=60.6
Q ss_pred EEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcC--CC------------CCCCCHH
Q 001995 217 TIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKG--SA------------TNAVESE 282 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~--~~------------~~~~~~~ 282 (985)
.+++|+|..|.|||||++.++.-. ......+++.-. +.......+-+.++- +. .......
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G 102 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDL---KPQQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGG 102 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccC---CCCCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHH
Confidence 589999999999999999998732 112233333211 111111111111110 00 1111111
Q ss_pred H-HHHHHHHHhcCceEEEEecCCCC-CCcccHHHHHhhhcCCCCCcEEEEEcCchhhHH
Q 001995 283 T-VLKQLRESIEGKKFFLVLDDVWT-EEPQNWEQLLGCLRCGSKESRILVTTRNEKVAI 339 (985)
Q Consensus 283 ~-~~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~ 339 (985)
+ ..-.+.+.+-.++=++++|+... .+....+.+...+.....+..||++|.+.....
T Consensus 103 ~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 103 ERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 2 22234555667888999998753 223333444444443234667888888877654
No 282
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.64 E-value=0.089 Score=51.92 Aligned_cols=86 Identities=15% Similarity=0.194 Sum_probs=43.5
Q ss_pred EEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCC-CCHHHHHHHHHHHhcCC---CCCCCCHHHHH-HHHHHHh
Q 001995 218 IISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEP-FDDIRIAKAILESLKGS---ATNAVESETVL-KQLRESI 292 (985)
Q Consensus 218 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~---~~~~~~~~~~~-~~l~~~l 292 (985)
++.++|++|+||||++..++.. ....=..++.++.... ....+.+....+..+.. .....+...+. +.+....
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~--~~~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALY--LKKKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHAR 79 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH--HHHCCCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 6889999999999999999873 3322123444443321 12233333334433211 11223333333 3333333
Q ss_pred cCceEEEEecCCC
Q 001995 293 EGKKFFLVLDDVW 305 (985)
Q Consensus 293 ~~k~~LlVlDdv~ 305 (985)
.+..-++|+|-.-
T Consensus 80 ~~~~d~viiDt~g 92 (173)
T cd03115 80 EENFDVVIVDTAG 92 (173)
T ss_pred hCCCCEEEEECcc
Confidence 4344356677764
No 283
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.63 E-value=0.06 Score=55.90 Aligned_cols=25 Identities=48% Similarity=0.687 Sum_probs=23.2
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhc
Q 001995 214 QRPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
+...+++|.|+.|+|||||++.+..
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 5678999999999999999999987
No 284
>CHL00195 ycf46 Ycf46; Provisional
Probab=95.62 E-value=0.1 Score=60.08 Aligned_cols=157 Identities=16% Similarity=0.142 Sum_probs=80.0
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcC
Q 001995 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEG 294 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 294 (985)
.++-|.++|++|.|||.+|+.+++. ....| +-++.+. +.... .......+...+...-..
T Consensus 258 ~pkGILL~GPpGTGKTllAkaiA~e--~~~~~---~~l~~~~----------l~~~~-----vGese~~l~~~f~~A~~~ 317 (489)
T CHL00195 258 TPRGLLLVGIQGTGKSLTAKAIAND--WQLPL---LRLDVGK----------LFGGI-----VGESESRMRQMIRIAEAL 317 (489)
T ss_pred CCceEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEEhHH----------hcccc-----cChHHHHHHHHHHHHHhc
Confidence 4567899999999999999999983 32222 1122211 11100 111122233333322245
Q ss_pred ceEEEEecCCCCCC-------cc-cH----HHHHhhhcCCCCCcEEEEEcCchh-hHHhh-cC-cccccccCCCCChHHH
Q 001995 295 KKFFLVLDDVWTEE-------PQ-NW----EQLLGCLRCGSKESRILVTTRNEK-VAIAI-GT-TKFNIIPIELLSDEDC 359 (985)
Q Consensus 295 k~~LlVlDdv~~~~-------~~-~~----~~l~~~l~~~~~gs~ilvTtR~~~-v~~~~-~~-~~~~~~~l~~L~~~e~ 359 (985)
.+++|++|+++..- .. .- ..+...+.....+.-||.||.... +...+ .. .-...+.++.-+.++-
T Consensus 318 ~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR 397 (489)
T CHL00195 318 SPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEER 397 (489)
T ss_pred CCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHH
Confidence 78999999985210 00 11 112222333334445666776543 22222 11 1114677888888888
Q ss_pred HHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCCh
Q 001995 360 WSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLP 395 (985)
Q Consensus 360 ~~Lf~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlP 395 (985)
.++|+.+............+ ...+++.+.|.-
T Consensus 398 ~~Il~~~l~~~~~~~~~~~d----l~~La~~T~GfS 429 (489)
T CHL00195 398 EKIFKIHLQKFRPKSWKKYD----IKKLSKLSNKFS 429 (489)
T ss_pred HHHHHHHHhhcCCCcccccC----HHHHHhhcCCCC
Confidence 88988776543211001111 455666666653
No 285
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=95.60 E-value=0.39 Score=51.50 Aligned_cols=154 Identities=12% Similarity=0.106 Sum_probs=89.6
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcch---h---hh--ccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHH
Q 001995 215 RPTIISITGMGGIGKTTLAKLIFNDN---E---VR--NHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLK 286 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~---~---~~--~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 286 (985)
-..+..++|..|+||+++|..+.+.- . .. .|-+...++.... .....+++..
T Consensus 17 l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g--------------------~~i~vd~Ir~ 76 (299)
T PRK07132 17 ISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFD--------------------KDLSKSEFLS 76 (299)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCC--------------------CcCCHHHHHH
Confidence 34677799999999999999987631 0 01 1111222232101 1122233332
Q ss_pred HHHHHh-----cCceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEEEEEcCc-hhhHHhhcCcccccccCCCCChHHHH
Q 001995 287 QLRESI-----EGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRILVTTRN-EKVAIAIGTTKFNIIPIELLSDEDCW 360 (985)
Q Consensus 287 ~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~~~~~~~~~~~~~l~~L~~~e~~ 360 (985)
...+.- .+.+=++|+||+........+.++..+.....++.+|++|.+ ..+...... ....+++.++++++..
T Consensus 77 l~~~~~~~~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~S-Rc~~~~f~~l~~~~l~ 155 (299)
T PRK07132 77 AINKLYFSSFVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVS-RCQVFNVKEPDQQKIL 155 (299)
T ss_pred HHHHhccCCcccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHh-CeEEEECCCCCHHHHH
Confidence 222110 147778999999766666778888888877777777765543 333332211 1268999999999998
Q ss_pred HHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHHH
Q 001995 361 SIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVKT 400 (985)
Q Consensus 361 ~Lf~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~ 400 (985)
+.+.... . . ++.+..++...+|.=-|+..
T Consensus 156 ~~l~~~~--~----~-----~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 156 AKLLSKN--K----E-----KEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred HHHHHcC--C----C-----hhHHHHHHHHcCCHHHHHHH
Confidence 8776531 1 1 12355666666763345544
No 286
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.58 E-value=0.002 Score=75.61 Aligned_cols=38 Identities=26% Similarity=0.245 Sum_probs=23.2
Q ss_pred ceeecccccC-CCCCCCCCCCCCcCeEEecCchhhhhhh
Q 001995 918 HLSICWSPEL-KALPDYILGSTSLDKLLIYYSRHLNNRY 955 (985)
Q Consensus 918 ~L~i~~c~~L-~~lp~~~~~l~~L~~L~i~~c~~l~~~~ 955 (985)
.+.+.+|+.+ ..+........+|+.|.+..|...+.+.
T Consensus 380 ~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~~~ 418 (482)
T KOG1947|consen 380 ELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTDKG 418 (482)
T ss_pred HHHhcCCcccchHHHHHhccCCccceEecccCccccccc
Confidence 4556667666 3332222333348999999998776654
No 287
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.56 E-value=0.088 Score=54.94 Aligned_cols=50 Identities=14% Similarity=0.375 Sum_probs=35.8
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHH
Q 001995 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAI 267 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 267 (985)
+.-+++.|.|.+|+|||++|.++.... . ..-..++||+... +..++.+.+
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~~-~-~~ge~~lyvs~ee--~~~~i~~~~ 68 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWNG-L-QMGEPGIYVALEE--HPVQVRRNM 68 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHH-H-HcCCcEEEEEeeC--CHHHHHHHH
Confidence 456899999999999999999887632 1 2345688888754 455555543
No 288
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.56 E-value=0.048 Score=57.33 Aligned_cols=89 Identities=24% Similarity=0.251 Sum_probs=56.4
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCC-CCCCCCHHH---HHHHHH
Q 001995 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGS-ATNAVESET---VLKQLR 289 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~-~~~~~~~~~---~~~~l~ 289 (985)
+.-+++=|+|+.|+||||+|.+++-..+ ..-..++|++....+++..+..--...+..- .....+.++ +...+.
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~~aq--~~g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~v~~~~~~e~q~~i~~~~~ 135 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVANAQ--KPGGKAAFIDTEHALDPERAKQLGVDLLDNLLVSQPDTGEQQLEIAEKLA 135 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHHHhh--cCCCeEEEEeCCCCCCHHHHHHHHHhhhcceeEecCCCHHHHHHHHHHHH
Confidence 5678999999999999999998876433 3334789999999888876543332212211 112222332 333333
Q ss_pred HHhcCceEEEEecCC
Q 001995 290 ESIEGKKFFLVLDDV 304 (985)
Q Consensus 290 ~~l~~k~~LlVlDdv 304 (985)
.....+--|+|+|.+
T Consensus 136 ~~~~~~i~LvVVDSv 150 (279)
T COG0468 136 RSGAEKIDLLVVDSV 150 (279)
T ss_pred HhccCCCCEEEEecC
Confidence 333334679999988
No 289
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.55 E-value=0.064 Score=58.63 Aligned_cols=59 Identities=19% Similarity=0.186 Sum_probs=42.1
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhc----cCCceEEEEeCCCCCHHHHHHHHHHHhcC
Q 001995 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRN----HFNEKIWVCVSEPFDDIRIAKAILESLKG 273 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 273 (985)
....++-|+|.+|+|||+||..++-...... .-..++|++....|+++.+ .+|++.++.
T Consensus 121 ~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~ 183 (342)
T PLN03186 121 ETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGL 183 (342)
T ss_pred cCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCC
Confidence 3567999999999999999988775322211 1125899999998888765 455666543
No 290
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.54 E-value=0.038 Score=61.17 Aligned_cols=54 Identities=19% Similarity=0.370 Sum_probs=37.1
Q ss_pred ceecchh---hHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcch
Q 001995 179 EIRGRNH---LQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDN 240 (985)
Q Consensus 179 ~~vGr~~---~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 240 (985)
++-|-|+ |+++|++.|..+.. . ..-++.=++-|.++|++|.|||-||++|+-..
T Consensus 305 dVkG~DEAK~ELeEiVefLkdP~k-------f-trLGGKLPKGVLLvGPPGTGKTlLARAvAGEA 361 (752)
T KOG0734|consen 305 DVKGVDEAKQELEEIVEFLKDPTK-------F-TRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 361 (752)
T ss_pred cccChHHHHHHHHHHHHHhcCcHH-------h-hhccCcCCCceEEeCCCCCchhHHHHHhhccc
Confidence 4556664 66777888864430 0 01113345779999999999999999999854
No 291
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.54 E-value=0.031 Score=62.91 Aligned_cols=102 Identities=19% Similarity=0.347 Sum_probs=64.9
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 258 (985)
++-|.+..+.++.+++.....+.... .-+-..++-|.+||++|.|||.||+.++++ ..-.| +.++.+
T Consensus 191 diGG~d~~~~el~~li~~i~~Pe~~~-----~lGv~PprGvLlHGPPGCGKT~lA~AiAge--l~vPf-----~~isAp- 257 (802)
T KOG0733|consen 191 DIGGLDKTLAELCELIIHIKHPEVFS-----SLGVRPPRGVLLHGPPGCGKTSLANAIAGE--LGVPF-----LSISAP- 257 (802)
T ss_pred hccChHHHHHHHHHHHHHhcCchhHh-----hcCCCCCCceeeeCCCCccHHHHHHHHhhh--cCCce-----Eeecch-
Confidence 67899999999988887533111110 011234577999999999999999999994 33233 333321
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCC
Q 001995 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVW 305 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~ 305 (985)
.|+..+.+ ...+.+.+.+.+.-..-++++++|+++
T Consensus 258 -------eivSGvSG-----ESEkkiRelF~~A~~~aPcivFiDeID 292 (802)
T KOG0733|consen 258 -------EIVSGVSG-----ESEKKIRELFDQAKSNAPCIVFIDEID 292 (802)
T ss_pred -------hhhcccCc-----ccHHHHHHHHHHHhccCCeEEEeeccc
Confidence 22222222 234455555556666789999999985
No 292
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.54 E-value=0.067 Score=58.48 Aligned_cols=58 Identities=17% Similarity=0.250 Sum_probs=41.1
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhc----cCCceEEEEeCCCCCHHHHHHHHHHHhc
Q 001995 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRN----HFNEKIWVCVSEPFDDIRIAKAILESLK 272 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 272 (985)
+...++-|+|.+|+||||+|.+++....... .=..++||+....|+...+. ++++.++
T Consensus 93 ~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~g 154 (310)
T TIGR02236 93 ETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARG 154 (310)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcC
Confidence 3568999999999999999999976432211 11268999998888877654 4445443
No 293
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.53 E-value=0.041 Score=55.51 Aligned_cols=79 Identities=23% Similarity=0.293 Sum_probs=43.6
Q ss_pred EEEEEccCCchHHHHHHHHhcchhhh-ccCC---ceEEEEeCCCCCHHHHHHHHHHHh----cCCCCCCCCHHHHHHHHH
Q 001995 218 IISITGMGGIGKTTLAKLIFNDNEVR-NHFN---EKIWVCVSEPFDDIRIAKAILESL----KGSATNAVESETVLKQLR 289 (985)
Q Consensus 218 vv~I~G~gGiGKTtLa~~v~~~~~~~-~~f~---~~~wv~~~~~~~~~~~~~~i~~~l----~~~~~~~~~~~~~~~~l~ 289 (985)
||+|.|.+|+||||+|+.+.. ... .... ....+.............. -... ....+...+.+.+.+.+.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~--~L~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~p~a~d~~~l~~~l~ 77 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQ--ILNKRGIPAMEMDIILSLDDFYDDYHLRDR-KGRGENRYNFDHPDAFDFDLLKEDLK 77 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH--HHTTCTTTCCCSEEEEEGGGGBHHHHHHHH-HHHCTTTSSTTSGGGBSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH--HhCccCcCccceeEEEeecccccccchhhH-hhccccccCCCCccccCHHHHHHHHH
Confidence 799999999999999999987 332 2222 1333333222222222221 1111 112234566777777777
Q ss_pred HHhcCceEEE
Q 001995 290 ESIEGKKFFL 299 (985)
Q Consensus 290 ~~l~~k~~Ll 299 (985)
...+++..-+
T Consensus 78 ~L~~g~~i~~ 87 (194)
T PF00485_consen 78 ALKNGGSIEI 87 (194)
T ss_dssp HHHTTSCEEE
T ss_pred HHhCCCcccc
Confidence 7666665443
No 294
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=95.52 E-value=0.059 Score=65.81 Aligned_cols=134 Identities=20% Similarity=0.214 Sum_probs=75.2
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 258 (985)
.++|+...++.+.+.+.... ....-|.|+|..|+|||++|+.+++.... .. ...+.+++..-.
T Consensus 377 ~liG~S~~~~~~~~~~~~~a---------------~~~~pVLI~GE~GTGK~~lA~~ih~~s~r-~~-~~~v~i~c~~~~ 439 (686)
T PRK15429 377 EIIGRSEAMYSVLKQVEMVA---------------QSDSTVLILGETGTGKELIARAIHNLSGR-NN-RRMVKMNCAAMP 439 (686)
T ss_pred ceeecCHHHHHHHHHHHHHh---------------CCCCCEEEECCCCcCHHHHHHHHHHhcCC-CC-CCeEEEecccCC
Confidence 68999999999887776433 22347899999999999999999874211 11 233445554322
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCCCcccHHHHHhhhcCCC-----------CCcE
Q 001995 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTEEPQNWEQLLGCLRCGS-----------KESR 327 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ 327 (985)
...+-..+.....+.... ... .....+. ....=.|+||||..........+...+..+. ...|
T Consensus 440 -~~~~~~~lfg~~~~~~~g-~~~-~~~g~le---~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~R 513 (686)
T PRK15429 440 -AGLLESDLFGHERGAFTG-ASA-QRIGRFE---LADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVR 513 (686)
T ss_pred -hhHhhhhhcCcccccccc-ccc-chhhHHH---hcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEE
Confidence 111111221111111000 000 0111111 1233569999998776666777777765321 2458
Q ss_pred EEEEcCch
Q 001995 328 ILVTTRNE 335 (985)
Q Consensus 328 ilvTtR~~ 335 (985)
||.||...
T Consensus 514 iI~~t~~~ 521 (686)
T PRK15429 514 LIAATNRD 521 (686)
T ss_pred EEEeCCCC
Confidence 88888653
No 295
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.47 E-value=0.078 Score=58.06 Aligned_cols=58 Identities=19% Similarity=0.305 Sum_probs=41.3
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhcc----CCceEEEEeCCCCCHHHHHHHHHHHhc
Q 001995 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRNH----FNEKIWVCVSEPFDDIRIAKAILESLK 272 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~i~~~l~ 272 (985)
+...++-|+|.+|+|||++|.+++........ =..++||+....|+...+.+ +++.++
T Consensus 100 ~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g 161 (317)
T PRK04301 100 ETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALG 161 (317)
T ss_pred cCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcC
Confidence 35679999999999999999999864222111 13689999988888776654 444443
No 296
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.47 E-value=0.091 Score=57.36 Aligned_cols=59 Identities=20% Similarity=0.175 Sum_probs=42.7
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhh----ccCCceEEEEeCCCCCHHHHHHHHHHHhcC
Q 001995 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVR----NHFNEKIWVCVSEPFDDIRIAKAILESLKG 273 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 273 (985)
+.-.++-|+|.+|+|||+|+..++-..... +.-..++||+....|++..+.+ +++.++.
T Consensus 124 ~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~ 186 (344)
T PLN03187 124 ETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGM 186 (344)
T ss_pred CCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 455799999999999999999886432221 1123689999999888887654 5565543
No 297
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.45 E-value=0.14 Score=50.09 Aligned_cols=115 Identities=13% Similarity=0.094 Sum_probs=60.3
Q ss_pred CEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEE-------EeCCCC--CHHHHHHHHHHHhcCCCCCCCCH-HHHH
Q 001995 216 PTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWV-------CVSEPF--DDIRIAKAILESLKGSATNAVES-ETVL 285 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv-------~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~-~~~~ 285 (985)
-.+++|+|..|.|||||++.+..-.. .....+++ .+.+.. ....+...+.- ........ +...
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~----~~~~~LS~G~~~r 99 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWP---WGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIY----PWDDVLSGGEQQR 99 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCCceEEEECCCCccccccHHHHhhc----cCCCCCCHHHHHH
Confidence 35899999999999999999987421 11122211 112221 11122222221 01112222 2223
Q ss_pred HHHHHHhcCceEEEEecCCCC-CCcccHHHHHhhhcCCCCCcEEEEEcCchhhHH
Q 001995 286 KQLRESIEGKKFFLVLDDVWT-EEPQNWEQLLGCLRCGSKESRILVTTRNEKVAI 339 (985)
Q Consensus 286 ~~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~ 339 (985)
-.+.+.+-.++=++++|+--. .+......+...+... +..||++|.+.....
T Consensus 100 v~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~ 152 (166)
T cd03223 100 LAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK 152 (166)
T ss_pred HHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh
Confidence 335566667788889998642 2233344444444432 346888888766543
No 298
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.44 E-value=0.15 Score=55.59 Aligned_cols=91 Identities=14% Similarity=0.085 Sum_probs=55.5
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCC-CCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh
Q 001995 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEP-FDDIRIAKAILESLKGSATNAVESETVLKQLRESI 292 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 292 (985)
.+.++++|+|+.|+||||++..++.. ....-..+.+|++... ....+.++...+.++.......+..++...+...-
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~--l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~ 281 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQ--LLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMT 281 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHH
Confidence 35689999999999999999999863 2222234666766432 23344555566655443223345556655554332
Q ss_pred c-CceEEEEecCCCC
Q 001995 293 E-GKKFFLVLDDVWT 306 (985)
Q Consensus 293 ~-~k~~LlVlDdv~~ 306 (985)
. +..=+|++|-+-.
T Consensus 282 ~~~~~D~VLIDTAGr 296 (407)
T PRK12726 282 YVNCVDHILIDTVGR 296 (407)
T ss_pred hcCCCCEEEEECCCC
Confidence 1 3456888898754
No 299
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.44 E-value=0.36 Score=51.46 Aligned_cols=196 Identities=16% Similarity=0.212 Sum_probs=100.9
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 258 (985)
++-|-++.+++|.+.+.-+-. .+... ...+-..++=|.++|++|.|||-||++|++ +....| +.+..
T Consensus 152 dIGGL~~Qi~EirE~VELPL~--~PElF--~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~--~T~AtF-----Irvvg-- 218 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLK--NPELF--EELGIDPPKGVLLYGPPGTGKTLLAKAVAN--QTDATF-----IRVVG-- 218 (406)
T ss_pred hccCHHHHHHHHHHHhccccc--CHHHH--HHcCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCceE-----EEecc--
Confidence 567899999999887653210 00000 001124567899999999999999999999 444333 33322
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh-cCceEEEEecCCCCC-----------CcccHH---HHHhhhcCC-
Q 001995 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESI-EGKKFFLVLDDVWTE-----------EPQNWE---QLLGCLRCG- 322 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~-----------~~~~~~---~l~~~l~~~- 322 (985)
.++.+..-+.. ..+...+.+.- ...+..|++|.++.. +.+.-. +|+..+..+
T Consensus 219 ------SElVqKYiGEG------aRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD 286 (406)
T COG1222 219 ------SELVQKYIGEG------ARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFD 286 (406)
T ss_pred ------HHHHHHHhccc------hHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCC
Confidence 12222222211 12223333332 356899999988421 111112 233333322
Q ss_pred -CCCcEEEEEcCchhhHHh--hcCcc-cccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCCh---
Q 001995 323 -SKESRILVTTRNEKVAIA--IGTTK-FNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLP--- 395 (985)
Q Consensus 323 -~~gs~ilvTtR~~~v~~~--~~~~~-~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlP--- 395 (985)
....|||..|-..++... +.... ...+++..-+.+.-.++|+-+...=.. .+.-+ .+.+++.|.|.-
T Consensus 287 ~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l--~~dvd----~e~la~~~~g~sGAd 360 (406)
T COG1222 287 PRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNL--ADDVD----LELLARLTEGFSGAD 360 (406)
T ss_pred CCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccC--ccCcC----HHHHHHhcCCCchHH
Confidence 345688888876654322 11111 145666644444445566655432211 12222 345666776654
Q ss_pred -hHHHHHHhhh
Q 001995 396 -LAVKTLGSLL 405 (985)
Q Consensus 396 -Lai~~~~~~L 405 (985)
-|+.+=|+++
T Consensus 361 lkaictEAGm~ 371 (406)
T COG1222 361 LKAICTEAGMF 371 (406)
T ss_pred HHHHHHHHhHH
Confidence 3455556655
No 300
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.42 E-value=0.045 Score=59.66 Aligned_cols=103 Identities=15% Similarity=0.183 Sum_probs=56.6
Q ss_pred CCEEEEEEccCCchHHH-HHHHHhcchhhhccCCceEEEEeCC-CCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh
Q 001995 215 RPTIISITGMGGIGKTT-LAKLIFNDNEVRNHFNEKIWVCVSE-PFDDIRIAKAILESLKGSATNAVESETVLKQLRESI 292 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTt-La~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 292 (985)
+.++|.++|+.|||||| ||+..+.- .....=..+..++... .....+-++..++-++.+-....+..++...+...
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~-~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l- 279 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARY-VMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEAL- 279 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHH-HhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHh-
Confidence 36899999999999998 55544431 1112223466666533 34555666666766666544445555555544433
Q ss_pred cCceEEEEecCCCCC--CcccHHHHHhhhc
Q 001995 293 EGKKFFLVLDDVWTE--EPQNWEQLLGCLR 320 (985)
Q Consensus 293 ~~k~~LlVlDdv~~~--~~~~~~~l~~~l~ 320 (985)
++. =+|.+|=+... +.....++...+.
T Consensus 280 ~~~-d~ILVDTaGrs~~D~~~i~el~~~~~ 308 (407)
T COG1419 280 RDC-DVILVDTAGRSQYDKEKIEELKELID 308 (407)
T ss_pred hcC-CEEEEeCCCCCccCHHHHHHHHHHHh
Confidence 333 34555655432 2233344444444
No 301
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=95.41 E-value=0.011 Score=57.92 Aligned_cols=39 Identities=28% Similarity=0.311 Sum_probs=28.7
Q ss_pred CEEEEEEccCCchHHHHHHHHhcchhhh-ccCCceEEEEeCC
Q 001995 216 PTIISITGMGGIGKTTLAKLIFNDNEVR-NHFNEKIWVCVSE 256 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~-~~f~~~~wv~~~~ 256 (985)
..++.+.|+.|+|||.||+.++. ... +.....+-++++.
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~--~l~~~~~~~~~~~d~s~ 42 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAE--LLFVGSERPLIRIDMSE 42 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHH--HHT-SSCCEEEEEEGGG
T ss_pred EEEEEEECCCCCCHHHHHHHHHH--HhccCCccchHHHhhhc
Confidence 46899999999999999999987 343 3444455555544
No 302
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.40 E-value=0.054 Score=55.59 Aligned_cols=21 Identities=38% Similarity=0.601 Sum_probs=19.7
Q ss_pred EEEEEccCCchHHHHHHHHhc
Q 001995 218 IISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 218 vv~I~G~gGiGKTtLa~~v~~ 238 (985)
+|+|.|..|+||||+|+.+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 303
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.39 E-value=0.02 Score=54.53 Aligned_cols=36 Identities=28% Similarity=0.277 Sum_probs=28.3
Q ss_pred CEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEE
Q 001995 216 PTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVC 253 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~ 253 (985)
..+|.|+|.+|+||||||+++.. +....-..+++++
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~--~L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALER--RLFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHH--HHHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEec
Confidence 36899999999999999999998 5555555666665
No 304
>PRK10867 signal recognition particle protein; Provisional
Probab=95.38 E-value=0.079 Score=59.71 Aligned_cols=25 Identities=40% Similarity=0.628 Sum_probs=21.8
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhc
Q 001995 214 QRPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
..+.+|.++|.+|+||||.|..++.
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHH
Confidence 3568999999999999998888776
No 305
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.36 E-value=0.06 Score=52.50 Aligned_cols=115 Identities=16% Similarity=0.194 Sum_probs=62.2
Q ss_pred EEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCC--CCHHHHHHHHHHHhcCCCCCCCCH-HHHHHHHHHHhc
Q 001995 217 TIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEP--FDDIRIAKAILESLKGSATNAVES-ETVLKQLRESIE 293 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~-~~~~~~l~~~l~ 293 (985)
.+++|+|..|.|||||.+.++.. .......+++.-... .+.....+ +.++-.. + ... +...-.+.+.+-
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~---~~~~~G~v~~~g~~~~~~~~~~~~~---~~i~~~~-q-LS~G~~qrl~laral~ 98 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGL---YKPDSGEILVDGKEVSFASPRDARR---AGIAMVY-Q-LSVGERQMVEIARALA 98 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC---CCCCCeEEEECCEECCcCCHHHHHh---cCeEEEE-e-cCHHHHHHHHHHHHHh
Confidence 59999999999999999999873 223344555432111 11111111 1111100 0 122 222333555666
Q ss_pred CceEEEEecCCCC-CCcccHHHHHhhhcCC-CCCcEEEEEcCchhhHH
Q 001995 294 GKKFFLVLDDVWT-EEPQNWEQLLGCLRCG-SKESRILVTTRNEKVAI 339 (985)
Q Consensus 294 ~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~ilvTtR~~~v~~ 339 (985)
.++-++++|+.-. .+......+...+... ..|.-||++|.+.....
T Consensus 99 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 99 RNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF 146 (163)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 7788999998743 2333444455555422 23567888888876443
No 306
>PRK13695 putative NTPase; Provisional
Probab=95.35 E-value=0.013 Score=58.03 Aligned_cols=22 Identities=50% Similarity=0.522 Sum_probs=19.7
Q ss_pred EEEEEccCCchHHHHHHHHhcc
Q 001995 218 IISITGMGGIGKTTLAKLIFND 239 (985)
Q Consensus 218 vv~I~G~gGiGKTtLa~~v~~~ 239 (985)
.++|+|.+|+|||||++.+++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998874
No 307
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.34 E-value=0.078 Score=52.17 Aligned_cols=114 Identities=18% Similarity=0.247 Sum_probs=61.6
Q ss_pred CEEEEEEccCCchHHHHHHHHhcch---hhhcc---CC--ceEEEEeCCCCCHHHHHHHHHHHhcCCCC------CCCCH
Q 001995 216 PTIISITGMGGIGKTTLAKLIFNDN---EVRNH---FN--EKIWVCVSEPFDDIRIAKAILESLKGSAT------NAVES 281 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~~---~~~~~---f~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------~~~~~ 281 (985)
-.+++|+|+.|+|||||.+.+..+. .+... |. .+.|+ .+ .+.+..++.... .....
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LSg 90 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLSG 90 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCCH
Confidence 3699999999999999999886320 11111 11 12232 11 345565553321 11112
Q ss_pred HH-HHHHHHHHhcCc--eEEEEecCCCC-CCcccHHHHHhhhcCC-CCCcEEEEEcCchhhHH
Q 001995 282 ET-VLKQLRESIEGK--KFFLVLDDVWT-EEPQNWEQLLGCLRCG-SKESRILVTTRNEKVAI 339 (985)
Q Consensus 282 ~~-~~~~l~~~l~~k--~~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~ilvTtR~~~v~~ 339 (985)
.+ ..-.+.+.+-.+ +-++++|+.-. .+....+.+...+... ..|..||++|.+.....
T Consensus 91 Gq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~ 153 (176)
T cd03238 91 GELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS 153 (176)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 22 222344555566 77888898643 2233344444444321 24667888988877653
No 308
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.33 E-value=0.083 Score=56.08 Aligned_cols=90 Identities=14% Similarity=0.264 Sum_probs=49.8
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCH--HHHHHHHHHHhcCCC---CCCCCHHH-HHHH
Q 001995 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDD--IRIAKAILESLKGSA---TNAVESET-VLKQ 287 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~--~~~~~~i~~~l~~~~---~~~~~~~~-~~~~ 287 (985)
.+.+++.++|++|+||||.+..++.. ....-..+.+++... +.. .+-+....+..+..- ....+... ....
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~--l~~~g~~V~li~~D~-~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~ 146 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANK--LKKQGKSVLLAAGDT-FRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDA 146 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEeCCC-CCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHH
Confidence 45689999999999999999998863 333323455665442 322 233344444443221 11122222 2333
Q ss_pred HHHHhcCceEEEEecCCCC
Q 001995 288 LRESIEGKKFFLVLDDVWT 306 (985)
Q Consensus 288 l~~~l~~k~~LlVlDdv~~ 306 (985)
+.....+..=++|+|-.-.
T Consensus 147 l~~~~~~~~D~ViIDT~G~ 165 (272)
T TIGR00064 147 IQKAKARNIDVVLIDTAGR 165 (272)
T ss_pred HHHHHHCCCCEEEEeCCCC
Confidence 4443344456788887743
No 309
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.32 E-value=0.016 Score=65.95 Aligned_cols=49 Identities=20% Similarity=0.339 Sum_probs=39.4
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhc
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
+++|.++.+++|++.|..... .. +..-+++.++|++|+||||||+.+++
T Consensus 77 d~yGlee~ieriv~~l~~Aa~----------gl-~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQ----------GL-EEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHH----------hc-CCCCceEEEecCCCCCchHHHHHHHH
Confidence 589999999999999943220 00 23557999999999999999999997
No 310
>PTZ00301 uridine kinase; Provisional
Probab=95.31 E-value=0.03 Score=56.80 Aligned_cols=23 Identities=39% Similarity=0.631 Sum_probs=21.2
Q ss_pred CEEEEEEccCCchHHHHHHHHhc
Q 001995 216 PTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
..+|+|.|.+|+||||||+.+.+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 47999999999999999998876
No 311
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.31 E-value=0.091 Score=59.53 Aligned_cols=88 Identities=11% Similarity=0.112 Sum_probs=48.3
Q ss_pred CEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC-CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcC
Q 001995 216 PTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF-DDIRIAKAILESLKGSATNAVESETVLKQLRESIEG 294 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 294 (985)
.+++.++|++|+||||++..++........-..+..|+....- ...+.++...+.++.......+.+++...+.+. .
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~-~- 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQL-R- 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHh-C-
Confidence 4699999999999999998887632211222346666654321 112233333343433322223344555555432 3
Q ss_pred ceEEEEecCCC
Q 001995 295 KKFFLVLDDVW 305 (985)
Q Consensus 295 k~~LlVlDdv~ 305 (985)
..=+||+|..-
T Consensus 299 ~~DlVlIDt~G 309 (424)
T PRK05703 299 DCDVILIDTAG 309 (424)
T ss_pred CCCEEEEeCCC
Confidence 35678889764
No 312
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.29 E-value=0.085 Score=57.30 Aligned_cols=58 Identities=21% Similarity=0.182 Sum_probs=40.4
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhc----cCCceEEEEeCCCCCHHHHHHHHHHHhc
Q 001995 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRN----HFNEKIWVCVSEPFDDIRIAKAILESLK 272 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 272 (985)
+...++.|+|.+|+|||||+..++....... .-..++|++....++... +.++++.++
T Consensus 94 ~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~R-l~~ia~~~~ 155 (316)
T TIGR02239 94 ETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPER-LLAIAERYG 155 (316)
T ss_pred CCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHH-HHHHHHHcC
Confidence 4568999999999999999998875322211 113579999888777775 344555543
No 313
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.28 E-value=0.11 Score=52.08 Aligned_cols=45 Identities=20% Similarity=0.238 Sum_probs=30.5
Q ss_pred EEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHH
Q 001995 218 IISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKA 266 (985)
Q Consensus 218 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 266 (985)
++.|.|.+|+|||++|.+++...- ..=..++|++... +...+.+.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~--~~g~~v~~~s~e~--~~~~~~~~ 45 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGL--ARGEPGLYVTLEE--SPEELIEN 45 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH--HCCCcEEEEECCC--CHHHHHHH
Confidence 368999999999999999877422 2224577887654 34444443
No 314
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=95.28 E-value=0.0044 Score=55.99 Aligned_cols=90 Identities=17% Similarity=0.234 Sum_probs=71.1
Q ss_pred CCCCceEEEccCcCCcchhhhHHHhhccCCcceeecCC--CCCCCCcccccCCCCCeEecCCCCCccccchhhcCCCCCc
Q 001995 575 DETKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL--PVGQIPKGIKKLIHLRYLALGENPWIKELPEALCELCNLQ 652 (985)
Q Consensus 575 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~--~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~ 652 (985)
...+|....+++|.. ..+.+++-.+++.+..|++. .+..+|..+..++.||.|+++.|. +...|.-|..|.+|-
T Consensus 51 ~~~el~~i~ls~N~f---k~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~-l~~~p~vi~~L~~l~ 126 (177)
T KOG4579|consen 51 KGYELTKISLSDNGF---KKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNP-LNAEPRVIAPLIKLD 126 (177)
T ss_pred CCceEEEEecccchh---hhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCc-cccchHHHHHHHhHH
Confidence 345566667777653 33344555666778888887 688899999999999999999999 899999999999999
Q ss_pred EeeccCcccccccchhh
Q 001995 653 TLDVSLCHYLKRLPERI 669 (985)
Q Consensus 653 ~L~l~~~~~l~~lp~~i 669 (985)
.||..++. ...+|-++
T Consensus 127 ~Lds~~na-~~eid~dl 142 (177)
T KOG4579|consen 127 MLDSPENA-RAEIDVDL 142 (177)
T ss_pred HhcCCCCc-cccCcHHH
Confidence 99999887 77777553
No 315
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.27 E-value=0.00087 Score=67.56 Aligned_cols=53 Identities=28% Similarity=0.395 Sum_probs=26.4
Q ss_pred CCCeEEEeeccCCCCCCCChhhhccccccEEeEeccCCCCcCCCCCCCCccceeeccC
Q 001995 790 SLEKLGIYGYAGDTISPTSDWMLSLAKLRVLTLRFCNECECLPPLGKLPCLETLVLEG 847 (985)
Q Consensus 790 ~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~ 847 (985)
+.++|+.+||....+ +....++.|+.|.|+-| .+..+.++..|.+|+.|+|+.
T Consensus 20 ~vkKLNcwg~~L~DI----sic~kMp~lEVLsLSvN-kIssL~pl~rCtrLkElYLRk 72 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI----SICEKMPLLEVLSLSVN-KISSLAPLQRCTRLKELYLRK 72 (388)
T ss_pred HhhhhcccCCCccHH----HHHHhcccceeEEeecc-ccccchhHHHHHHHHHHHHHh
Confidence 344455555543222 22234555555555555 344555555555555555554
No 316
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.26 E-value=0.13 Score=50.62 Aligned_cols=102 Identities=17% Similarity=0.128 Sum_probs=56.5
Q ss_pred EEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEE------eCCCCCHHHHHHHHHHHhcCCCCCCCCH-HHHHHHHH
Q 001995 217 TIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVC------VSEPFDDIRIAKAILESLKGSATNAVES-ETVLKQLR 289 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~------~~~~~~~~~~~~~i~~~l~~~~~~~~~~-~~~~~~l~ 289 (985)
.+++|+|..|+|||||++.+..-. ......+++. +.+... ... +...-.+.
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~i~~~~q~~~-------------------LSgGq~qrv~la 83 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQL---IPNGDNDEWDGITPVYKPQYID-------------------LSGGELQRVAIA 83 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCC---CCCCcEEEECCEEEEEEcccCC-------------------CCHHHHHHHHHH
Confidence 599999999999999999998631 1222333321 111110 111 12223345
Q ss_pred HHhcCceEEEEecCCCC-CCcccHHHHHhhhcCC-CC-CcEEEEEcCchhhHHh
Q 001995 290 ESIEGKKFFLVLDDVWT-EEPQNWEQLLGCLRCG-SK-ESRILVTTRNEKVAIA 340 (985)
Q Consensus 290 ~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~-gs~ilvTtR~~~v~~~ 340 (985)
+.+..++-++++|+--. .+......+...+... .. +.-||++|.+......
T Consensus 84 ral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~ 137 (177)
T cd03222 84 AALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDY 137 (177)
T ss_pred HHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHH
Confidence 56667788999998743 2223333344444321 12 2457778877665443
No 317
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.26 E-value=0.095 Score=51.59 Aligned_cols=118 Identities=17% Similarity=0.198 Sum_probs=61.1
Q ss_pred CEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCC--CCCHHHHHHHHHHHhcC--CCCCC---------CCHH
Q 001995 216 PTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSE--PFDDIRIAKAILESLKG--SATNA---------VESE 282 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~--~~~~~~~~~~i~~~l~~--~~~~~---------~~~~ 282 (985)
-.+++|+|..|.|||||.+.++.-. ......+++.-.. ....... .+.++- ..... .+..
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~---~~~~G~i~~~g~~~~~~~~~~~----~~~i~~~~~~~~~~~~t~~e~lLS~G 100 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLY---DPTSGEILIDGVDLRDLDLESL----RKNIAYVPQDPFLFSGTIRENILSGG 100 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC---CCCCCEEEECCEEhhhcCHHHH----HhhEEEEcCCchhccchHHHHhhCHH
Confidence 3599999999999999999998731 2233334332111 0011111 111110 00000 1111
Q ss_pred H-HHHHHHHHhcCceEEEEecCCCC-CCcccHHHHHhhhcCCCCCcEEEEEcCchhhHHh
Q 001995 283 T-VLKQLRESIEGKKFFLVLDDVWT-EEPQNWEQLLGCLRCGSKESRILVTTRNEKVAIA 340 (985)
Q Consensus 283 ~-~~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~ 340 (985)
+ ..-.+.+.+-.++-++++|+-.. .+......+...+.....+..||++|.+......
T Consensus 101 ~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 160 (171)
T cd03228 101 QRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD 160 (171)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh
Confidence 1 11224455667788999998743 2233344444444433335678888887766543
No 318
>PRK05439 pantothenate kinase; Provisional
Probab=95.26 E-value=0.099 Score=56.08 Aligned_cols=81 Identities=20% Similarity=0.228 Sum_probs=45.0
Q ss_pred CCCCEEEEEEccCCchHHHHHHHHhcchhhhcc--CCceEEEEeCCCCCHHHHHHHHHHHhc-CCCCCCCCHHHHHHHHH
Q 001995 213 TQRPTIISITGMGGIGKTTLAKLIFNDNEVRNH--FNEKIWVCVSEPFDDIRIAKAILESLK-GSATNAVESETVLKQLR 289 (985)
Q Consensus 213 ~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~--f~~~~wv~~~~~~~~~~~~~~i~~~l~-~~~~~~~~~~~~~~~l~ 289 (985)
...+-+|+|.|.+|+||||+|+.+.. ..... -..+.-++...-+-..+.+..- ..+. ...++..+.+.+...+.
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~--~l~~~~~~~~v~vi~~DdFy~~~~~l~~~-~l~~~kg~Pes~D~~~l~~~L~ 159 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQA--LLSRWPEHPKVELVTTDGFLYPNAVLEER-GLMKRKGFPESYDMRALLRFLS 159 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH--HHHhhCCCCceEEEeccccccCHHHHhhh-hccccCCCcccccHHHHHHHHH
Confidence 35678999999999999999998876 33222 1234444443332222222110 0010 11244556666776666
Q ss_pred HHhcCce
Q 001995 290 ESIEGKK 296 (985)
Q Consensus 290 ~~l~~k~ 296 (985)
....|+.
T Consensus 160 ~Lk~G~~ 166 (311)
T PRK05439 160 DVKSGKP 166 (311)
T ss_pred HHHcCCC
Confidence 6655554
No 319
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.24 E-value=0.21 Score=51.87 Aligned_cols=116 Identities=20% Similarity=0.201 Sum_probs=63.5
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCC--------------C----
Q 001995 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGS--------------A---- 275 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~--------------~---- 275 (985)
+.-.++.|.|.+|+||||+|.+++... . ..-..++|++.... ...+... +++++.. .
T Consensus 18 ~~G~~~~i~G~~G~GKT~l~~~~~~~~-~-~~g~~~~~is~e~~--~~~i~~~-~~~~g~~~~~~~~~~~l~i~d~~~~~ 92 (229)
T TIGR03881 18 PRGFFVAVTGEPGTGKTIFCLHFAYKG-L-RDGDPVIYVTTEES--RESIIRQ-AAQFGMDFEKAIEEGKLVIIDALMKE 92 (229)
T ss_pred cCCeEEEEECCCCCChHHHHHHHHHHH-H-hcCCeEEEEEccCC--HHHHHHH-HHHhCCCHHHHhhcCCEEEEEccccc
Confidence 345799999999999999999887532 1 22346788876443 3333322 2222210 0
Q ss_pred ------CCCCCHHHHHHHHHHHhcC---ceEEEEecCCCCC---CcccHHHHHhhhc--CCCCCcEEEEEcCc
Q 001995 276 ------TNAVESETVLKQLRESIEG---KKFFLVLDDVWTE---EPQNWEQLLGCLR--CGSKESRILVTTRN 334 (985)
Q Consensus 276 ------~~~~~~~~~~~~l~~~l~~---k~~LlVlDdv~~~---~~~~~~~l~~~l~--~~~~gs~ilvTtR~ 334 (985)
....+.+++...+++..+. +.-++|+|.+... +......+...+. -...|.-+|+|+..
T Consensus 93 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~vvIDsl~~l~~~~~~~~r~~~~~l~~~l~~~~~tvil~~~~ 165 (229)
T TIGR03881 93 KEDEWSLRELSIEELLNKVIEAKKYLGYGHARLVIDSMSAFWLDKPAMARKYSYYLKRVLNRWNFTILLTSQY 165 (229)
T ss_pred cccccccccCCHHHHHHHHHHHHHhhccCceEEEecCchhhhccChHHHHHHHHHHHHHHHhCCCEEEEEecc
Confidence 0123456666666665543 4568899987421 2111112111111 12347778888763
No 320
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.24 E-value=0.075 Score=56.42 Aligned_cols=136 Identities=26% Similarity=0.314 Sum_probs=73.6
Q ss_pred eecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcch-hhhccCCceE-E---EEe
Q 001995 180 IRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDN-EVRNHFNEKI-W---VCV 254 (985)
Q Consensus 180 ~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~-~~~~~f~~~~-w---v~~ 254 (985)
+-+|..+..--.++|. ++++..|.+.|.+|.|||-||.+..=.+ ..+..|..++ . +.+
T Consensus 226 i~prn~eQ~~ALdlLl-----------------d~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpv 288 (436)
T COG1875 226 IRPRNAEQRVALDLLL-----------------DDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPV 288 (436)
T ss_pred cCcccHHHHHHHHHhc-----------------CCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCc
Confidence 4457777777778887 4678999999999999999986653321 2234454433 1 122
Q ss_pred CCCC---------CHHHHHHHHHHHhcCC-CCCCCCHHHHHHHHH---------HHhcCc---eEEEEecCCCCCCcccH
Q 001995 255 SEPF---------DDIRIAKAILESLKGS-ATNAVESETVLKQLR---------ESIEGK---KFFLVLDDVWTEEPQNW 312 (985)
Q Consensus 255 ~~~~---------~~~~~~~~i~~~l~~~-~~~~~~~~~~~~~l~---------~~l~~k---~~LlVlDdv~~~~~~~~ 312 (985)
++.. -+.-..+.|..-+..- ..+......+...+. .+.+|+ .-++|+|.+.+-...+
T Consensus 289 G~dIGfLPG~eEeKm~PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTphe- 367 (436)
T COG1875 289 GEDIGFLPGTEEEKMGPWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPHE- 367 (436)
T ss_pred ccccCcCCCchhhhccchHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHHH-
Confidence 2221 1112233333222210 011111111211111 122343 4689999997655544
Q ss_pred HHHHhhhcCCCCCcEEEEEcCch
Q 001995 313 EQLLGCLRCGSKESRILVTTRNE 335 (985)
Q Consensus 313 ~~l~~~l~~~~~gs~ilvTtR~~ 335 (985)
+...+...+.||||+.|--..
T Consensus 368 --ikTiltR~G~GsKIVl~gd~a 388 (436)
T COG1875 368 --LKTILTRAGEGSKIVLTGDPA 388 (436)
T ss_pred --HHHHHHhccCCCEEEEcCCHH
Confidence 444455678899999987543
No 321
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.24 E-value=0.04 Score=56.32 Aligned_cols=122 Identities=16% Similarity=0.161 Sum_probs=58.9
Q ss_pred CEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCC---HHHHHHHHHH--
Q 001995 216 PTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVE---SETVLKQLRE-- 290 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~---~~~~~~~l~~-- 290 (985)
.+++.|+|+.|.||||+.+.+...... .+ ...|+.+.. .. ...+.++...+.....-... ...-...+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~l-a~--~G~~v~a~~-~~-~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l 103 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFL-AH--IGSFVPADS-AT-IGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKAL 103 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHH-Hh--CCCeeEcCC-cE-EeeeeeeeeeeCCccChhhccchHHHHHHHHHHHH
Confidence 488999999999999999998742111 11 111221111 00 01111222222211110001 1111111222
Q ss_pred HhcCceEEEEecCCCCCCc-ccHH----HHHhhhcCC-CCCcEEEEEcCchhhHHhhc
Q 001995 291 SIEGKKFFLVLDDVWTEEP-QNWE----QLLGCLRCG-SKESRILVTTRNEKVAIAIG 342 (985)
Q Consensus 291 ~l~~k~~LlVlDdv~~~~~-~~~~----~l~~~l~~~-~~gs~ilvTtR~~~v~~~~~ 342 (985)
.+..++.|++||..-.... .+.. .+...+... ..+..+|+||-+........
T Consensus 104 ~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~~ 161 (213)
T cd03281 104 RLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRSL 161 (213)
T ss_pred HhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhhh
Confidence 2246789999999854321 1111 223333222 23457999999988776653
No 322
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.24 E-value=0.024 Score=54.99 Aligned_cols=93 Identities=28% Similarity=0.249 Sum_probs=66.9
Q ss_pred hhcCCCCCCCCCeEEEeeccCCCCCCCChhhhccccccEEeEeccCCC--CcCCCCCCCCccceeeccCCCCceEeCCcc
Q 001995 781 VLECLQPPSSLEKLGIYGYAGDTISPTSDWMLSLAKLRVLTLRFCNEC--ECLPPLGKLPCLETLVLEGMSSVKRLGNGF 858 (985)
Q Consensus 781 ~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~--~~l~~l~~l~~L~~L~L~~~~~l~~l~~~~ 858 (985)
.++.+..+++|..|.+.+|.+..+. |.--..+++|..|.|.+|+.. .++.++..||.|++|.+-+++ ++.-..-
T Consensus 56 ~l~~lp~l~rL~tLll~nNrIt~I~--p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Np-v~~k~~Y- 131 (233)
T KOG1644|consen 56 KLDNLPHLPRLHTLLLNNNRITRID--PDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNP-VEHKKNY- 131 (233)
T ss_pred hcccCCCccccceEEecCCcceeec--cchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCc-hhcccCc-
Confidence 3456777889999999999988875 444446889999999999643 467789999999999998865 3322211
Q ss_pred cCCchhhhhhhhhhhcccccccCCCCCccceeecccc
Q 001995 859 LGIAEDHQARADQAETASSIIRDTAFPRLETLEFLDM 895 (985)
Q Consensus 859 ~~~~~~~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~ 895 (985)
.... .-.+|+|+.|++..-
T Consensus 132 -R~yv-----------------l~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 132 -RLYV-----------------LYKLPSLRTLDFQKV 150 (233)
T ss_pred -eeEE-----------------EEecCcceEeehhhh
Confidence 0000 135899999998764
No 323
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.18 E-value=0.45 Score=47.82 Aligned_cols=105 Identities=20% Similarity=0.252 Sum_probs=63.6
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 258 (985)
.++|.|...+.+++--..-. . +...--|.+||.-|.|||.|++++.+ .+.+..-.- |.|..
T Consensus 61 ~l~Gvd~qk~~L~~NT~~F~----------~---G~pANnVLLwGaRGtGKSSLVKA~~~--e~~~~glrL--VEV~k-- 121 (287)
T COG2607 61 DLVGVDRQKEALVRNTEQFA----------E---GLPANNVLLWGARGTGKSSLVKALLN--EYADEGLRL--VEVDK-- 121 (287)
T ss_pred HHhCchHHHHHHHHHHHHHH----------c---CCcccceEEecCCCCChHHHHHHHHH--HHHhcCCeE--EEEcH--
Confidence 68998888887765332211 0 12334689999999999999999998 454444332 22221
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCC-CCcccHHHHHhhhcC
Q 001995 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWT-EEPQNWEQLLGCLRC 321 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~ 321 (985)
.+..+...+.+.++. ...||+|..||+.= .+...+..+...+..
T Consensus 122 -----------------~dl~~Lp~l~~~Lr~--~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG 166 (287)
T COG2607 122 -----------------EDLATLPDLVELLRA--RPEKFILFCDDLSFEEGDDAYKALKSALEG 166 (287)
T ss_pred -----------------HHHhhHHHHHHHHhc--CCceEEEEecCCCCCCCchHHHHHHHHhcC
Confidence 111122222222222 36799999999953 334567777777763
No 324
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.16 E-value=0.082 Score=52.17 Aligned_cols=119 Identities=18% Similarity=0.169 Sum_probs=61.8
Q ss_pred CEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcC---CC--CCC--------CCHH
Q 001995 216 PTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKG---SA--TNA--------VESE 282 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~---~~--~~~--------~~~~ 282 (985)
-.+++|+|..|.|||||++.++... ......+++.-....+.. ..+...++- .. ... ....
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G 99 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLL---KPDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSGG 99 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCHH
Confidence 3589999999999999999998732 122334443211100000 011111110 00 000 1111
Q ss_pred H-HHHHHHHHhcCceEEEEecCCCC-CCcccHHHHHhhhcCC-CCCcEEEEEcCchhhHHh
Q 001995 283 T-VLKQLRESIEGKKFFLVLDDVWT-EEPQNWEQLLGCLRCG-SKESRILVTTRNEKVAIA 340 (985)
Q Consensus 283 ~-~~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~ilvTtR~~~v~~~ 340 (985)
+ ..-.+.+.+..++=++++|+.-. .+......+...+... ..|.-||++|.+......
T Consensus 100 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~ 160 (173)
T cd03230 100 MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAER 160 (173)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHH
Confidence 1 12235566677888999998743 2233334444444422 235678888888765543
No 325
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.16 E-value=0.15 Score=52.77 Aligned_cols=49 Identities=18% Similarity=0.260 Sum_probs=32.7
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHH
Q 001995 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAI 267 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 267 (985)
...++.|.|.+|.||||+|.+++... .+.. ..+++++.. .+..++.+.+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~-~~~g-~~~~yi~~e--~~~~~~~~~~ 71 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGF-LQNG-YSVSYVSTQ--LTTTEFIKQM 71 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-HhCC-CcEEEEeCC--CCHHHHHHHH
Confidence 34699999999999999987776532 1222 345666633 3555666665
No 326
>PRK15453 phosphoribulokinase; Provisional
Probab=95.12 E-value=0.21 Score=52.23 Aligned_cols=78 Identities=22% Similarity=0.166 Sum_probs=44.3
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCC--CCHHHHHHHHHH--Hhc--CCC--CCCCCHHHHH
Q 001995 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEP--FDDIRIAKAILE--SLK--GSA--TNAVESETVL 285 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~--~l~--~~~--~~~~~~~~~~ 285 (985)
.+..+|+|.|.+|+||||+|+.+.+ ..+..=...+.++...- ++..+.-..+.. .-+ -+. ++..+.+.+.
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~--if~~~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~ 80 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEK--IFRRENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELE 80 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH--HHhhcCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHH
Confidence 3567999999999999999999985 22211112334443321 233333222211 111 112 5666778888
Q ss_pred HHHHHHhc
Q 001995 286 KQLRESIE 293 (985)
Q Consensus 286 ~~l~~~l~ 293 (985)
+.++.+.+
T Consensus 81 ~~l~~l~~ 88 (290)
T PRK15453 81 QLFREYGE 88 (290)
T ss_pred HHHHHHhc
Confidence 88877655
No 327
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.09 E-value=0.066 Score=60.94 Aligned_cols=89 Identities=17% Similarity=0.173 Sum_probs=47.2
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCC-CCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc
Q 001995 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSE-PFDDIRIAKAILESLKGSATNAVESETVLKQLRESIE 293 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 293 (985)
...+++|+|.+|+||||++..++.....+.....+..++... .....+.++...+.++.......+...+...+.+ +.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~-l~ 427 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLER-LR 427 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHH-hc
Confidence 457999999999999999998886321121123355555422 1122233333333333222222333444444433 33
Q ss_pred CceEEEEecCCC
Q 001995 294 GKKFFLVLDDVW 305 (985)
Q Consensus 294 ~k~~LlVlDdv~ 305 (985)
..=+||+|..-
T Consensus 428 -~~DLVLIDTaG 438 (559)
T PRK12727 428 -DYKLVLIDTAG 438 (559)
T ss_pred -cCCEEEecCCC
Confidence 34588888874
No 328
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.08 E-value=0.2 Score=56.56 Aligned_cols=91 Identities=16% Similarity=0.177 Sum_probs=46.5
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCC-CCHHHHHHHHHHHhcCCC---CCCCCHHHHHHHHH
Q 001995 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEP-FDDIRIAKAILESLKGSA---TNAVESETVLKQLR 289 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~---~~~~~~~~~~~~l~ 289 (985)
..+.++.++|.+|+||||.|..++.....+..+ .++-|++... +...+.+.....+.+.+. ....+...+.....
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~-kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al 175 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGK-KVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRAL 175 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCC-eEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHH
Confidence 356899999999999999998888631111222 3344443321 122333444444443321 11223333333333
Q ss_pred HHhcCceE-EEEecCCC
Q 001995 290 ESIEGKKF-FLVLDDVW 305 (985)
Q Consensus 290 ~~l~~k~~-LlVlDdv~ 305 (985)
+....+.+ ++|+|-.-
T Consensus 176 ~~~~~~~~DvVIIDTaG 192 (428)
T TIGR00959 176 EYAKENGFDVVIVDTAG 192 (428)
T ss_pred HHHHhcCCCEEEEeCCC
Confidence 33333334 77777664
No 329
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=95.06 E-value=0.11 Score=59.20 Aligned_cols=116 Identities=21% Similarity=0.367 Sum_probs=67.5
Q ss_pred CEEEEEEccCCchHHH-HHHHHhcchhhhccCCceEEEEeCCCC--CHHHHHHHHHHHhcCCCCC------------C--
Q 001995 216 PTIISITGMGGIGKTT-LAKLIFNDNEVRNHFNEKIWVCVSEPF--DDIRIAKAILESLKGSATN------------A-- 278 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTt-La~~v~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~------------~-- 278 (985)
-.||.|+|..|+|||| ||+.+|.+ -|...--|-+.++- ....+.+.+.++++..-.. .
T Consensus 371 n~vvvivgETGSGKTTQl~QyL~ed-----GY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYsIRFEdvT~~~ 445 (1042)
T KOG0924|consen 371 NQVVVIVGETGSGKTTQLAQYLYED-----GYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYSIRFEDVTSED 445 (1042)
T ss_pred CcEEEEEecCCCCchhhhHHHHHhc-----ccccCCeeeecCchHHHHHHHHHHHHHHhCCccccccceEEEeeecCCCc
Confidence 3599999999999998 77777764 22221134444443 3456778888887543110 0
Q ss_pred ------CCHHHHHHHHHHHhcCceEEEEecCCCCCCcccHHHHHhhh---cCCCCCcEEEEEcCchhh
Q 001995 279 ------VESETVLKQLRESIEGKKFFLVLDDVWTEEPQNWEQLLGCL---RCGSKESRILVTTRNEKV 337 (985)
Q Consensus 279 ------~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l---~~~~~gs~ilvTtR~~~v 337 (985)
.+.--+.+.|.+..-.|=-.||+|.+.+.. -.-+-+...+ ......-|+|||+-..+.
T Consensus 446 T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERs-lNtDilfGllk~~larRrdlKliVtSATm~a 512 (1042)
T KOG0924|consen 446 TKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERS-LNTDILFGLLKKVLARRRDLKLIVTSATMDA 512 (1042)
T ss_pred eeEEEeccchHHHHHhhhhhhhheeEEEechhhhcc-cchHHHHHHHHHHHHhhccceEEEeeccccH
Confidence 111223334444444566789999997533 2223333333 234456799999876543
No 330
>PTZ00035 Rad51 protein; Provisional
Probab=95.05 E-value=0.16 Score=55.71 Aligned_cols=58 Identities=17% Similarity=0.196 Sum_probs=39.9
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhh----ccCCceEEEEeCCCCCHHHHHHHHHHHhc
Q 001995 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVR----NHFNEKIWVCVSEPFDDIRIAKAILESLK 272 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 272 (985)
+.-.++.|+|.+|+|||||+..++-..+.. +.=..++|++....++.+. +.++++.++
T Consensus 116 ~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~er-i~~ia~~~g 177 (337)
T PTZ00035 116 ETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPER-IVQIAERFG 177 (337)
T ss_pred CCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHH-HHHHHHHhC
Confidence 456899999999999999999887532221 1122467999887777766 344455544
No 331
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.05 E-value=0.046 Score=58.87 Aligned_cols=26 Identities=35% Similarity=0.575 Sum_probs=23.7
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcc
Q 001995 214 QRPTIISITGMGGIGKTTLAKLIFND 239 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 239 (985)
..+..++|||++|.|||.+|+.+++.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999983
No 332
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.02 E-value=0.0062 Score=61.61 Aligned_cols=59 Identities=29% Similarity=0.245 Sum_probs=36.4
Q ss_pred cccCCCCCeEecCCC--CCccccchhhcCCCCCcEeeccCcccccc---cchhhhhccccceeecc
Q 001995 621 IKKLIHLRYLALGEN--PWIKELPEALCELCNLQTLDVSLCHYLKR---LPERIGQLINLRHLMNS 681 (985)
Q Consensus 621 i~~l~~Lr~L~L~~~--~~i~~lp~~i~~L~~L~~L~l~~~~~l~~---lp~~i~~L~~L~~L~l~ 681 (985)
+-.|++|++|.++.| .....++....++++|++|++++|+ ++. ++ .+..+.+|..|++.
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~lstl~-pl~~l~nL~~Ldl~ 124 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKDLSTLR-PLKELENLKSLDLF 124 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-cccccccc-hhhhhcchhhhhcc
Confidence 334667777777777 4233455555566777777777776 432 22 24556667777776
No 333
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.00 E-value=0.26 Score=49.94 Aligned_cols=57 Identities=12% Similarity=0.167 Sum_probs=37.1
Q ss_pred HHHHHHhcCceEEEEecCCC-CCCcccHHHHHhhhcCC--CCCcEEEEEcCchhhHHhhc
Q 001995 286 KQLRESIEGKKFFLVLDDVW-TEEPQNWEQLLGCLRCG--SKESRILVTTRNEKVAIAIG 342 (985)
Q Consensus 286 ~~l~~~l~~k~~LlVlDdv~-~~~~~~~~~l~~~l~~~--~~gs~ilvTtR~~~v~~~~~ 342 (985)
-.+.+.|-..+-+|+-|.-- .-|.+.-+.+...+... ..|.-||+.|-+..++..+.
T Consensus 151 VAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~d 210 (226)
T COG1136 151 VAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYAD 210 (226)
T ss_pred HHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCC
Confidence 34667777888889998642 12223334444444422 34778999999999998765
No 334
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=94.99 E-value=0.16 Score=53.15 Aligned_cols=21 Identities=24% Similarity=0.456 Sum_probs=19.1
Q ss_pred EEEEEccCCchHHHHHHHHhc
Q 001995 218 IISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 218 vv~I~G~gGiGKTtLa~~v~~ 238 (985)
+..|+|++|+|||+||..++-
T Consensus 3 ~~ll~g~~G~GKS~lal~la~ 23 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLAL 23 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHH
Confidence 678999999999999999876
No 335
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.95 E-value=0.029 Score=64.28 Aligned_cols=71 Identities=25% Similarity=0.250 Sum_probs=47.3
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHH----HHHHH
Q 001995 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVL----KQLRE 290 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~----~~l~~ 290 (985)
...-|.|.|..|+|||+||+++++... +.+.-.+.+|+++.-. ....+..+ ..+.+
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~-------------------~~~~e~iQk~l~~vfse 489 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLD-------------------GSSLEKIQKFLNNVFSE 489 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhcc-------------------chhHHHHHHHHHHHHHH
Confidence 445789999999999999999998433 4444456667665411 11122222 23445
Q ss_pred HhcCceEEEEecCCC
Q 001995 291 SIEGKKFFLVLDDVW 305 (985)
Q Consensus 291 ~l~~k~~LlVlDdv~ 305 (985)
.+...+-++||||++
T Consensus 490 ~~~~~PSiIvLDdld 504 (952)
T KOG0735|consen 490 ALWYAPSIIVLDDLD 504 (952)
T ss_pred HHhhCCcEEEEcchh
Confidence 566789999999984
No 336
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=94.93 E-value=0.16 Score=61.16 Aligned_cols=166 Identities=19% Similarity=0.209 Sum_probs=82.2
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 258 (985)
++.|.+...+++.+.+....++.... . ....-.+-|.|+|++|.|||++|+.++.. ....| +.++.++
T Consensus 153 di~g~~~~~~~l~~i~~~~~~~~~~~----~-~~~~~~~gill~G~~G~GKt~~~~~~a~~--~~~~f---~~is~~~-- 220 (644)
T PRK10733 153 DVAGCDEAKEEVAELVEYLREPSRFQ----K-LGGKIPKGVLMVGPPGTGKTLLAKAIAGE--AKVPF---FTISGSD-- 220 (644)
T ss_pred HHcCHHHHHHHHHHHHHHhhCHHHHH----h-cCCCCCCcEEEECCCCCCHHHHHHHHHHH--cCCCE---EEEehHH--
Confidence 56777766666655443221100000 0 00112234999999999999999999873 32222 2222221
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCCC----------cccHHH----HHhhhcC--C
Q 001995 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTEE----------PQNWEQ----LLGCLRC--G 322 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------~~~~~~----l~~~l~~--~ 322 (985)
+ .....+ .....+...+.......+++|++|+++... ...+.. ++..+.. .
T Consensus 221 ----~----~~~~~g-----~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~ 287 (644)
T PRK10733 221 ----F----VEMFVG-----VGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG 287 (644)
T ss_pred ----h----HHhhhc-----ccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccC
Confidence 1 111111 112233333444445678999999985421 112222 2222221 1
Q ss_pred CCCcEEEEEcCchhhHH-hhc-Cc-ccccccCCCCChHHHHHHHHHHhcC
Q 001995 323 SKESRILVTTRNEKVAI-AIG-TT-KFNIIPIELLSDEDCWSIFSQLALS 369 (985)
Q Consensus 323 ~~gs~ilvTtR~~~v~~-~~~-~~-~~~~~~l~~L~~~e~~~Lf~~~~~~ 369 (985)
..+.-||.||...+... .+. .. -...+.+..-+.++-.++++.+...
T Consensus 288 ~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~ 337 (644)
T PRK10733 288 NEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRR 337 (644)
T ss_pred CCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhc
Confidence 23444555776654322 211 11 1146677777888888888776643
No 337
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=94.92 E-value=0.074 Score=54.71 Aligned_cols=121 Identities=18% Similarity=0.209 Sum_probs=67.2
Q ss_pred EEEEEEccCCchHHHHHHHHhcchh-----hh------ccC---CceEEEEeCCCC------CH----------------
Q 001995 217 TIISITGMGGIGKTTLAKLIFNDNE-----VR------NHF---NEKIWVCVSEPF------DD---------------- 260 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~~~~-----~~------~~f---~~~~wv~~~~~~------~~---------------- 260 (985)
.+++|+|+.|.|||||.+.+.--.+ +. ..+ ..+.||.=...+ ++
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~ 110 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR 110 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccc
Confidence 6999999999999999999976210 00 001 134455311110 11
Q ss_pred ------HHHHHHHHHHhcCCC-----CCCCCHHHHHHH-HHHHhcCceEEEEecCCC----CCCcccHHHHHhhhcCCCC
Q 001995 261 ------IRIAKAILESLKGSA-----TNAVESETVLKQ-LRESIEGKKFFLVLDDVW----TEEPQNWEQLLGCLRCGSK 324 (985)
Q Consensus 261 ------~~~~~~i~~~l~~~~-----~~~~~~~~~~~~-l~~~l~~k~~LlVlDdv~----~~~~~~~~~l~~~l~~~~~ 324 (985)
.+...+.+++++... ...-+..+.+.. +.+.|..++=|++||.-- .......-++...+...
T Consensus 111 ~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-- 188 (254)
T COG1121 111 RLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-- 188 (254)
T ss_pred cccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC--
Confidence 234445555554322 222233343333 567788999999999742 12222333344444433
Q ss_pred CcEEEEEcCchhhHH
Q 001995 325 ESRILVTTRNEKVAI 339 (985)
Q Consensus 325 gs~ilvTtR~~~v~~ 339 (985)
|.-||++|-+-....
T Consensus 189 g~tIl~vtHDL~~v~ 203 (254)
T COG1121 189 GKTVLMVTHDLGLVM 203 (254)
T ss_pred CCEEEEEeCCcHHhH
Confidence 777999998765443
No 338
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.90 E-value=0.011 Score=59.68 Aligned_cols=89 Identities=18% Similarity=0.170 Sum_probs=62.0
Q ss_pred CCCCceEEEccCcCCcc-hhhhHHHhhccCCcceeecCCC------CCCC-------CcccccCCCCCeEecCCCCCccc
Q 001995 575 DETKLRSLVLDQRLSFK-PRIALSKLFDRLTCLRSIDGLP------VGQI-------PKGIKKLIHLRYLALGENPWIKE 640 (985)
Q Consensus 575 ~~~~Lr~L~l~~~~~~~-~~~~~~~~~~~l~~Lr~L~l~~------~~~l-------p~~i~~l~~Lr~L~L~~~~~i~~ 640 (985)
.+..+..++++||.... ....+.+.+.+-++|++-+++. ..++ .+.+-++++|+..+||.|.+-..
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 46678888888885321 2334556677788898888771 1122 34467899999999999984344
Q ss_pred cch----hhcCCCCCcEeeccCcccccc
Q 001995 641 LPE----ALCELCNLQTLDVSLCHYLKR 664 (985)
Q Consensus 641 lp~----~i~~L~~L~~L~l~~~~~l~~ 664 (985)
.|+ -|++-.+|.+|.+++|. +.-
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnG-lGp 134 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNG-LGP 134 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCC-CCc
Confidence 444 46677899999999987 543
No 339
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=94.90 E-value=0.025 Score=54.90 Aligned_cols=81 Identities=20% Similarity=0.274 Sum_probs=51.2
Q ss_pred CCCeEecCCCCCccccchhhcCCCCCcEeeccCcccccccchhhhh-ccccceeecccccccccccCCCcCCCCCCCCcc
Q 001995 626 HLRYLALGENPWIKELPEALCELCNLQTLDVSLCHYLKRLPERIGQ-LINLRHLMNSKEEWSRLSYMPRGMERLTGLRTL 704 (985)
Q Consensus 626 ~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~-L~~L~~L~l~~~~~~~l~~lp~~i~~l~~L~~L 704 (985)
..-.+||++|. +..++. +..+++|.+|.+.+|. +..+-+.+.. +++|..|.+.+|....+..+ ..+..++.|+.|
T Consensus 43 ~~d~iDLtdNd-l~~l~~-lp~l~rL~tLll~nNr-It~I~p~L~~~~p~l~~L~LtnNsi~~l~dl-~pLa~~p~L~~L 118 (233)
T KOG1644|consen 43 QFDAIDLTDND-LRKLDN-LPHLPRLHTLLLNNNR-ITRIDPDLDTFLPNLKTLILTNNSIQELGDL-DPLASCPKLEYL 118 (233)
T ss_pred ccceecccccc-hhhccc-CCCccccceEEecCCc-ceeeccchhhhccccceEEecCcchhhhhhc-chhccCCcccee
Confidence 35567787777 666654 6677888888888777 6555555544 56788888876655444433 224445566666
Q ss_pred CceEec
Q 001995 705 GAFVAS 710 (985)
Q Consensus 705 ~~~~~~ 710 (985)
.+..+.
T Consensus 119 tll~Np 124 (233)
T KOG1644|consen 119 TLLGNP 124 (233)
T ss_pred eecCCc
Confidence 655443
No 340
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.88 E-value=0.043 Score=57.96 Aligned_cols=23 Identities=35% Similarity=0.354 Sum_probs=18.4
Q ss_pred EEEEEEccCCchHHHHHHHHhcc
Q 001995 217 TIISITGMGGIGKTTLAKLIFND 239 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~~ 239 (985)
+.|.|+|.+|+||||+|+++...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~ 24 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKY 24 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Confidence 47899999999999999999873
No 341
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.88 E-value=0.13 Score=50.90 Aligned_cols=25 Identities=36% Similarity=0.598 Sum_probs=22.2
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcc
Q 001995 215 RPTIISITGMGGIGKTTLAKLIFND 239 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~ 239 (985)
...+|+|+|++|+||||+|+.++..
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~ 27 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEK 27 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3469999999999999999999973
No 342
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=94.86 E-value=0.017 Score=53.82 Aligned_cols=21 Identities=48% Similarity=0.694 Sum_probs=19.3
Q ss_pred EEEEccCCchHHHHHHHHhcc
Q 001995 219 ISITGMGGIGKTTLAKLIFND 239 (985)
Q Consensus 219 v~I~G~gGiGKTtLa~~v~~~ 239 (985)
|+|.|..|+||||+|+++...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999873
No 343
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.78 E-value=0.1 Score=51.84 Aligned_cols=121 Identities=15% Similarity=0.129 Sum_probs=59.6
Q ss_pred CEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcC---CCC--CC----------CC
Q 001995 216 PTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKG---SAT--NA----------VE 280 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~---~~~--~~----------~~ 280 (985)
-.+++|+|..|.|||||++.++... ......+.+.-.+......-.....+.+.- ... .. ..
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~lS 102 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAGLE---EPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALGLS 102 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeecCC
Confidence 3599999999999999999998631 122333333211000000000011111110 000 00 11
Q ss_pred H-HHHHHHHHHHhcCceEEEEecCCCC-CCcccHHHHHhhhcCC-CC-CcEEEEEcCchhhHH
Q 001995 281 S-ETVLKQLRESIEGKKFFLVLDDVWT-EEPQNWEQLLGCLRCG-SK-ESRILVTTRNEKVAI 339 (985)
Q Consensus 281 ~-~~~~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~-gs~ilvTtR~~~v~~ 339 (985)
. +...-.+...+..++=++++|+--. .|......+...+... .. |..||++|.+.....
T Consensus 103 ~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~ 165 (178)
T cd03229 103 GGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAA 165 (178)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 1 1112234556667888999998643 2333444455544422 12 556888887766544
No 344
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.76 E-value=0.014 Score=35.06 Aligned_cols=19 Identities=32% Similarity=0.690 Sum_probs=10.8
Q ss_pred CCeEecCCCCCccccchhhc
Q 001995 627 LRYLALGENPWIKELPEALC 646 (985)
Q Consensus 627 Lr~L~L~~~~~i~~lp~~i~ 646 (985)
|++|+|++|. ++.+|++++
T Consensus 2 L~~Ldls~n~-l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNN-LTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSE-ESEEGTTTT
T ss_pred ccEEECCCCc-CEeCChhhc
Confidence 5566666664 556665544
No 345
>PRK06547 hypothetical protein; Provisional
Probab=94.75 E-value=0.037 Score=54.23 Aligned_cols=26 Identities=35% Similarity=0.364 Sum_probs=23.2
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcc
Q 001995 214 QRPTIISITGMGGIGKTTLAKLIFND 239 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 239 (985)
....+|+|.|++|+||||+|+.+...
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999873
No 346
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=94.75 E-value=0.11 Score=60.82 Aligned_cols=131 Identities=17% Similarity=0.205 Sum_probs=75.7
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 258 (985)
.++|+...++++.+.+.... ....-|.|+|..|+|||++|+.+.+.... .-...+.|++..-.
T Consensus 188 ~iig~s~~~~~~~~~i~~~a---------------~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r--~~~p~v~v~c~~~~ 250 (509)
T PRK05022 188 EMIGQSPAMQQLKKEIEVVA---------------ASDLNVLILGETGVGKELVARAIHAASPR--ADKPLVYLNCAALP 250 (509)
T ss_pred ceeecCHHHHHHHHHHHHHh---------------CCCCcEEEECCCCccHHHHHHHHHHhCCc--CCCCeEEEEcccCC
Confidence 79999999999999887544 23457899999999999999999874211 11123455555432
Q ss_pred CHHHHHHHHHHHhcCCCCC---CCCHHHHHHHHHHHhcCceEEEEecCCCCCCcccHHHHHhhhcCCC-----------C
Q 001995 259 DDIRIAKAILESLKGSATN---AVESETVLKQLRESIEGKKFFLVLDDVWTEEPQNWEQLLGCLRCGS-----------K 324 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~ 324 (985)
+ ..+.. .+.+.... ....+. ...+. ....=-|+||++..........+...+..+. .
T Consensus 251 ~--~~~e~---~lfG~~~g~~~ga~~~~-~g~~~---~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~ 321 (509)
T PRK05022 251 E--SLAES---ELFGHVKGAFTGAISNR-SGKFE---LADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRV 321 (509)
T ss_pred h--HHHHH---HhcCccccccCCCcccC-Ccchh---hcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceec
Confidence 2 22221 12221100 000000 00011 1122236899998777666777777765332 1
Q ss_pred CcEEEEEcCch
Q 001995 325 ESRILVTTRNE 335 (985)
Q Consensus 325 gs~ilvTtR~~ 335 (985)
..|||.||...
T Consensus 322 ~~RiI~~t~~~ 332 (509)
T PRK05022 322 DVRVIAATNRD 332 (509)
T ss_pred ceEEEEecCCC
Confidence 45888888643
No 347
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.74 E-value=0.02 Score=46.55 Aligned_cols=21 Identities=52% Similarity=0.705 Sum_probs=19.4
Q ss_pred EEEEEccCCchHHHHHHHHhc
Q 001995 218 IISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 218 vv~I~G~gGiGKTtLa~~v~~ 238 (985)
+|+|.|..|+||||+|+.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~ 21 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAE 21 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999987
No 348
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.71 E-value=0.042 Score=54.11 Aligned_cols=22 Identities=45% Similarity=0.511 Sum_probs=20.1
Q ss_pred EEEEEccCCchHHHHHHHHhcc
Q 001995 218 IISITGMGGIGKTTLAKLIFND 239 (985)
Q Consensus 218 vv~I~G~gGiGKTtLa~~v~~~ 239 (985)
.|.|.|.+|+||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999984
No 349
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.71 E-value=0.2 Score=56.82 Aligned_cols=158 Identities=20% Similarity=0.319 Sum_probs=88.1
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcC
Q 001995 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEG 294 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 294 (985)
.+.-|.++|++|.|||-||++|+| +.+.+| +++-.+ +++... .......+...+++.-..
T Consensus 544 ~PsGvLL~GPPGCGKTLlAKAVAN--Eag~NF-----isVKGP----ELlNkY---------VGESErAVR~vFqRAR~s 603 (802)
T KOG0733|consen 544 APSGVLLCGPPGCGKTLLAKAVAN--EAGANF-----ISVKGP----ELLNKY---------VGESERAVRQVFQRARAS 603 (802)
T ss_pred CCCceEEeCCCCccHHHHHHHHhh--hccCce-----EeecCH----HHHHHH---------hhhHHHHHHHHHHHhhcC
Confidence 356789999999999999999999 444454 444321 111111 112223344444444457
Q ss_pred ceEEEEecCCCCC-----CcccH------HHHHhhhcC--CCCCcEEEEEcCchhhH-Hhh-cCc-ccccccCCCCChHH
Q 001995 295 KKFFLVLDDVWTE-----EPQNW------EQLLGCLRC--GSKESRILVTTRNEKVA-IAI-GTT-KFNIIPIELLSDED 358 (985)
Q Consensus 295 k~~LlVlDdv~~~-----~~~~~------~~l~~~l~~--~~~gs~ilvTtR~~~v~-~~~-~~~-~~~~~~l~~L~~~e 358 (985)
-+++|+||.++.. +...| ++++.-+.. ...|.-||-.|-.+++- ..+ ... -...+-++.-+.+|
T Consensus 604 aPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~e 683 (802)
T KOG0733|consen 604 APCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEE 683 (802)
T ss_pred CCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHH
Confidence 8999999998531 11122 333333331 23565666666555543 222 111 11456677778888
Q ss_pred HHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCC
Q 001995 359 CWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGL 394 (985)
Q Consensus 359 ~~~Lf~~~~~~~~~~~~~~~~~~~~~~~I~~~~~Gl 394 (985)
-.++++...-....+...+-++++++.. .+|.|.
T Consensus 684 R~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gf 717 (802)
T KOG0733|consen 684 RVAILKTITKNTKPPLSSDVDLDEIARN--TKCEGF 717 (802)
T ss_pred HHHHHHHHhccCCCCCCcccCHHHHhhc--ccccCC
Confidence 8888887765433332344455555543 355554
No 350
>PRK04328 hypothetical protein; Provisional
Probab=94.70 E-value=0.12 Score=54.21 Aligned_cols=41 Identities=15% Similarity=0.292 Sum_probs=31.3
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCC
Q 001995 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSE 256 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 256 (985)
+.-.++.|.|.+|.|||+||.++... ....-..++|++..+
T Consensus 21 p~gs~ili~G~pGsGKT~l~~~fl~~--~~~~ge~~lyis~ee 61 (249)
T PRK04328 21 PERNVVLLSGGPGTGKSIFSQQFLWN--GLQMGEPGVYVALEE 61 (249)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHH--HHhcCCcEEEEEeeC
Confidence 35679999999999999999998763 222335678888765
No 351
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=94.68 E-value=0.96 Score=48.18 Aligned_cols=71 Identities=21% Similarity=0.235 Sum_probs=47.8
Q ss_pred cCceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEEEEEcCch-hhHHhhcCcccccccCCCCChHHHHHHHHH
Q 001995 293 EGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRILVTTRNE-KVAIAIGTTKFNIIPIELLSDEDCWSIFSQ 365 (985)
Q Consensus 293 ~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~ 365 (985)
.+++-++|+||++.......+.++..+.....++.+|++|.+. .+....... ...+++.+ +.++..+.+..
T Consensus 102 ~~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SR-cq~i~f~~-~~~~~~~~L~~ 173 (290)
T PRK07276 102 EGKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSR-TQIFHFPK-NEAYLIQLLEQ 173 (290)
T ss_pred cCCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHc-ceeeeCCC-cHHHHHHHHHH
Confidence 3566799999998888888899999998776667777766554 333322211 15667766 66666666653
No 352
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=94.66 E-value=0.063 Score=59.19 Aligned_cols=112 Identities=15% Similarity=0.186 Sum_probs=67.5
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 258 (985)
.++|+++....+...+..+. -+.+.|.+|+|||+||+.++. .... ..++|.+....
T Consensus 25 ~~~g~~~~~~~~l~a~~~~~-------------------~vll~G~PG~gKT~la~~lA~--~l~~---~~~~i~~t~~l 80 (329)
T COG0714 25 VVVGDEEVIELALLALLAGG-------------------HVLLEGPPGVGKTLLARALAR--ALGL---PFVRIQCTPDL 80 (329)
T ss_pred eeeccHHHHHHHHHHHHcCC-------------------CEEEECCCCccHHHHHHHHHH--HhCC---CeEEEecCCCC
Confidence 58898888888877777443 589999999999999999997 3332 24556666666
Q ss_pred CHHHHHHHHHHHhcC--CCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCCCcccHHHHHhhhcC
Q 001995 259 DDIRIAKAILESLKG--SATNAVESETVLKQLRESIEGKKFFLVLDDVWTEEPQNWEQLLGCLRC 321 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~--~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~ 321 (985)
...++.-...-.... .........-+ +..-+.++.+|.++......-..+...+..
T Consensus 81 ~p~d~~G~~~~~~~~~~~~~~~~~~gpl-------~~~~~~ill~DEInra~p~~q~aLl~~l~e 138 (329)
T COG0714 81 LPSDLLGTYAYAALLLEPGEFRFVPGPL-------FAAVRVILLLDEINRAPPEVQNALLEALEE 138 (329)
T ss_pred CHHHhcCchhHhhhhccCCeEEEecCCc-------ccccceEEEEeccccCCHHHHHHHHHHHhC
Confidence 655554333222210 00000000000 011115999999988776655666666543
No 353
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.65 E-value=0.026 Score=57.77 Aligned_cols=25 Identities=48% Similarity=0.804 Sum_probs=22.9
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhc
Q 001995 214 QRPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
.+..+|+|+|.+|+||||||+.++.
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999999987
No 354
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.63 E-value=0.2 Score=55.65 Aligned_cols=82 Identities=24% Similarity=0.298 Sum_probs=48.1
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCC-----CCCCHHHHHHHHH
Q 001995 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSAT-----NAVESETVLKQLR 289 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 289 (985)
.-.++.|.|.+|+|||||+.+++.. ....-..++|++..+ +..++ ..-++.++.... ...+.+.+.+.+.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~--~a~~g~~VlYvs~EE--s~~qi-~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~ 155 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAAR--LAKRGGKVLYVSGEE--SPEQI-KLRADRLGISTENLYLLAETNLEDILASIE 155 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCc--CHHHH-HHHHHHcCCCcccEEEEccCcHHHHHHHHH
Confidence 4579999999999999999999873 322334577887643 23332 222344443211 1123344433332
Q ss_pred HHhcCceEEEEecCC
Q 001995 290 ESIEGKKFFLVLDDV 304 (985)
Q Consensus 290 ~~l~~k~~LlVlDdv 304 (985)
+.+.-+||+|.+
T Consensus 156 ---~~~~~lVVIDSI 167 (372)
T cd01121 156 ---ELKPDLVIIDSI 167 (372)
T ss_pred ---hcCCcEEEEcch
Confidence 235667888887
No 355
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=94.60 E-value=0.84 Score=48.44 Aligned_cols=102 Identities=12% Similarity=0.031 Sum_probs=60.3
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhh-----------hccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHH
Q 001995 215 RPTIISITGMGGIGKTTLAKLIFNDNEV-----------RNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESET 283 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~-----------~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~ 283 (985)
-..-..++|+.|+||+++|..++..--- .+..+...|+.-.. .......++
T Consensus 18 l~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~------------------~~~~I~idq 79 (290)
T PRK05917 18 VPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQG------------------KGRLHSIET 79 (290)
T ss_pred cCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCC------------------CCCcCcHHH
Confidence 3457789999999999999988762100 00011111211000 000122333
Q ss_pred HHHHHHHHh-----cCceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEEEEEcCch
Q 001995 284 VLKQLRESI-----EGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRILVTTRNE 335 (985)
Q Consensus 284 ~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~ 335 (985)
.. .+.+.+ .++.=++|+|+++....+.++.++..+.....++.+|++|.+.
T Consensus 80 iR-~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~ 135 (290)
T PRK05917 80 PR-AIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKP 135 (290)
T ss_pred HH-HHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCCh
Confidence 32 233333 3556688999998887888999999998776677666666653
No 356
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=94.60 E-value=0.097 Score=55.71 Aligned_cols=80 Identities=20% Similarity=0.201 Sum_probs=42.2
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhccC--CceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH
Q 001995 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRNHF--NEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRES 291 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 291 (985)
..+.+|+|.|..|+||||+|+.+.. ...... ..+..++...-..........-..-....+...+.+.+...+...
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~--ll~~~~~~g~V~vi~~D~f~~~~~~l~~~g~~~~~g~P~s~D~~~l~~~L~~L 137 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA--LLSRWPEHRKVELITTDGFLHPNQVLKERNLMKKKGFPESYDMHRLVKFLSDL 137 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH--HHhhcCCCCceEEEecccccccHHHHHHcCCccccCCChhccHHHHHHHHHHH
Confidence 4568999999999999999987764 222111 124444443322222222211000001123455666666666665
Q ss_pred hcCc
Q 001995 292 IEGK 295 (985)
Q Consensus 292 l~~k 295 (985)
..++
T Consensus 138 k~g~ 141 (290)
T TIGR00554 138 KSGK 141 (290)
T ss_pred HCCC
Confidence 5444
No 357
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=94.56 E-value=0.16 Score=57.05 Aligned_cols=87 Identities=16% Similarity=0.174 Sum_probs=49.4
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCC------CCCCCCHHH-----
Q 001995 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGS------ATNAVESET----- 283 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~------~~~~~~~~~----- 283 (985)
.-..++|+|..|+|||||++.+.... .....++++.-....++.++....+...... ..+......
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~---~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~ 240 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARAD---AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPL 240 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC---CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHH
Confidence 34589999999999999999887632 1222344444333445555444444332111 111111111
Q ss_pred HHHHHHHHh--cCceEEEEecCC
Q 001995 284 VLKQLRESI--EGKKFFLVLDDV 304 (985)
Q Consensus 284 ~~~~l~~~l--~~k~~LlVlDdv 304 (985)
..-.+.+++ +++.+|+++||+
T Consensus 241 ~a~~iAEyfrd~G~~Vll~~Dsl 263 (450)
T PRK06002 241 TATAIAEYFRDRGENVLLIVDSV 263 (450)
T ss_pred HHHHHHHHHHHcCCCEEEeccch
Confidence 222244554 589999999998
No 358
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.56 E-value=0.16 Score=50.08 Aligned_cols=116 Identities=16% Similarity=0.182 Sum_probs=59.2
Q ss_pred EEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCC--CCCHHHHHHHHHHHhcC--CCCCC---------CCHH-
Q 001995 217 TIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSE--PFDDIRIAKAILESLKG--SATNA---------VESE- 282 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~--~~~~~~~~~~i~~~l~~--~~~~~---------~~~~- 282 (985)
.+++|+|..|.|||||.+.++.- .......+++.-.. ....... .+.++- +.... ....
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~---~~~~~G~i~~~g~~~~~~~~~~~----~~~i~~~~q~~~~~~~tv~~~lLS~G~ 101 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGL---LRPTSGRVRLDGADISQWDPNEL----GDHVGYLPQDDELFSGSIAENILSGGQ 101 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhc---cCCCCCeEEECCEEcccCCHHHH----HhheEEECCCCccccCcHHHHCcCHHH
Confidence 58999999999999999999863 12223333332110 0111111 111111 00000 1111
Q ss_pred HHHHHHHHHhcCceEEEEecCCCC-CCcccHHHHHhhhcCC-CCCcEEEEEcCchhhHH
Q 001995 283 TVLKQLRESIEGKKFFLVLDDVWT-EEPQNWEQLLGCLRCG-SKESRILVTTRNEKVAI 339 (985)
Q Consensus 283 ~~~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~ilvTtR~~~v~~ 339 (985)
...-.+.+.+-.++=++++|+... -+......+...+... ..|..||++|.+.....
T Consensus 102 ~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 160 (173)
T cd03246 102 RQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA 160 (173)
T ss_pred HHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 122234455666777999998743 2223333444444321 23667888888776554
No 359
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=94.49 E-value=0.22 Score=57.95 Aligned_cols=132 Identities=19% Similarity=0.194 Sum_probs=72.1
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 258 (985)
+++|....++++.+.+..-. ....-|.|.|..|.||+++|+.+++... +..-+ -+-|++..-.
T Consensus 213 ~iiG~S~~m~~~~~~i~~~A---------------~~~~pVLI~GE~GTGKe~lA~~IH~~S~-r~~~p-fv~inC~~l~ 275 (526)
T TIGR02329 213 DLLGASAPMEQVRALVRLYA---------------RSDATVLILGESGTGKELVAQAIHQLSG-RRDFP-FVAINCGAIA 275 (526)
T ss_pred heeeCCHHHHHHHHHHHHHh---------------CCCCcEEEECCCCcCHHHHHHHHHHhcC-cCCCC-EEEeccccCC
Confidence 58999999999988876433 2235789999999999999999987321 11111 2234443322
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHH---HHHHHHHHHhcCceEEEEecCCCCCCcccHHHHHhhhcCCC-----------C
Q 001995 259 DDIRIAKAILESLKGSATNAVESE---TVLKQLRESIEGKKFFLVLDDVWTEEPQNWEQLLGCLRCGS-----------K 324 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~---~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~ 324 (985)
...+.. .+.+......... .....+ + ....=-|+||++.+........+...+.... .
T Consensus 276 --e~lles---eLFG~~~gaftga~~~~~~Gl~-e--~A~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~r~g~~~~~~~ 347 (526)
T TIGR02329 276 --ESLLEA---ELFGYEEGAFTGARRGGRTGLI-E--AAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPV 347 (526)
T ss_pred --hhHHHH---HhcCCcccccccccccccccch-h--hcCCceEEecChHhCCHHHHHHHHHHHhcCcEEecCCCceeee
Confidence 122222 2222111100000 000000 0 1123348999997766666667777765331 1
Q ss_pred CcEEEEEcCch
Q 001995 325 ESRILVTTRNE 335 (985)
Q Consensus 325 gs~ilvTtR~~ 335 (985)
..|||.||...
T Consensus 348 dvRiIaat~~~ 358 (526)
T TIGR02329 348 DVRVVAATHCA 358 (526)
T ss_pred cceEEeccCCC
Confidence 23788877543
No 360
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.48 E-value=0.35 Score=51.02 Aligned_cols=103 Identities=11% Similarity=0.173 Sum_probs=54.0
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC-CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc
Q 001995 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF-DDIRIAKAILESLKGSATNAVESETVLKQLRESIE 293 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 293 (985)
+..+++++|.+|+||||+++.+... ....=..+.+++..... ....-++...+.++-......+.+.+...+...-+
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~--l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~ 151 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQ--FHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 151 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHh
Confidence 3469999999999999999988763 22221245556554221 12222233333332221222344455444433211
Q ss_pred -CceEEEEecCCCCC--CcccHHHHHhhh
Q 001995 294 -GKKFFLVLDDVWTE--EPQNWEQLLGCL 319 (985)
Q Consensus 294 -~k~~LlVlDdv~~~--~~~~~~~l~~~l 319 (985)
++.=++++|..-.. +....+++...+
T Consensus 152 ~~~~D~ViIDt~Gr~~~~~~~l~el~~~~ 180 (270)
T PRK06731 152 EARVDYILIDTAGKNYRASETVEEMIETM 180 (270)
T ss_pred cCCCCEEEEECCCCCcCCHHHHHHHHHHH
Confidence 34578889988543 223444454444
No 361
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=94.47 E-value=0.027 Score=53.53 Aligned_cols=21 Identities=43% Similarity=0.591 Sum_probs=19.4
Q ss_pred EEEEEccCCchHHHHHHHHhc
Q 001995 218 IISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 218 vv~I~G~gGiGKTtLa~~v~~ 238 (985)
+|.++|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999985
No 362
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.46 E-value=0.092 Score=53.13 Aligned_cols=121 Identities=19% Similarity=0.201 Sum_probs=60.9
Q ss_pred CEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHH---HHHHHHh
Q 001995 216 PTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVL---KQLRESI 292 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~---~~l~~~l 292 (985)
..++.|+|+.|.||||+.+.+.... +..+ ...+|.+.. ....+...|...+.............. ..+...+
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~-~la~--~G~~vpa~~--~~l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il 103 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLA-IMAQ--IGCFVPAEY--ATLPIFNRLLSRLSNDDSMERNLSTFASEMSETAYIL 103 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHHH--cCCCcchhh--cCccChhheeEecCCccccchhhhHHHHHHHHHHHHH
Confidence 3789999999999999999886431 1111 111222111 011222333333322211111111111 1122222
Q ss_pred --cCceEEEEecCCCCCC-ccc----HHHHHhhhcCCCCCcEEEEEcCchhhHHhhcC
Q 001995 293 --EGKKFFLVLDDVWTEE-PQN----WEQLLGCLRCGSKESRILVTTRNEKVAIAIGT 343 (985)
Q Consensus 293 --~~k~~LlVlDdv~~~~-~~~----~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~~ 343 (985)
..++-|+++|...... ..+ ...+...+.. .|..+|+||-+..++..+..
T Consensus 104 ~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~~~ 159 (204)
T cd03282 104 DYADGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAILGN 159 (204)
T ss_pred HhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHhhc
Confidence 3568899999974321 111 1223333332 37789999999988876543
No 363
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.46 E-value=0.34 Score=48.04 Aligned_cols=124 Identities=15% Similarity=0.202 Sum_probs=68.3
Q ss_pred CEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeC-------------------CCC------------------
Q 001995 216 PTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVS-------------------EPF------------------ 258 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~-------------------~~~------------------ 258 (985)
-.|++|+|+.|+|||||.+.+..= ...-...+|+.-. +.|
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~L---E~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~ 104 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNGL---EEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVK 104 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC---cCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHH
Confidence 359999999999999999998652 2222234444321 111
Q ss_pred -------CHHHHHHHHHHHhcCCC-----CCCCCH-HHHHHHHHHHhcCceEEEEecCCCCC-CcccHHHHHhhhcC-CC
Q 001995 259 -------DDIRIAKAILESLKGSA-----TNAVES-ETVLKQLRESIEGKKFFLVLDDVWTE-EPQNWEQLLGCLRC-GS 323 (985)
Q Consensus 259 -------~~~~~~~~i~~~l~~~~-----~~~~~~-~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~-~~ 323 (985)
..++....+++.++... +...+. ++-.-.|.+.|.-++=++.||..-+. |++...+++..+.. ..
T Consensus 105 v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~ 184 (240)
T COG1126 105 VKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAE 184 (240)
T ss_pred HcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHH
Confidence 12333444444444321 111111 22233466778888889999998542 33344444443331 23
Q ss_pred CCcEEEEEcCchhhHHhhc
Q 001995 324 KESRILVTTRNEKVAIAIG 342 (985)
Q Consensus 324 ~gs~ilvTtR~~~v~~~~~ 342 (985)
.|--.|+.|-....|..+.
T Consensus 185 eGmTMivVTHEM~FAr~Va 203 (240)
T COG1126 185 EGMTMIIVTHEMGFAREVA 203 (240)
T ss_pred cCCeEEEEechhHHHHHhh
Confidence 4556777777766665543
No 364
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.46 E-value=0.36 Score=49.39 Aligned_cols=209 Identities=15% Similarity=0.160 Sum_probs=113.8
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchh----hhccCCceEEEEe
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNE----VRNHFNEKIWVCV 254 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~----~~~~f~~~~wv~~ 254 (985)
.+.++++..+++..... .++.+-..++|+.|.||-|.+..+.+.-. -+-.-+...|.+-
T Consensus 14 ~l~~~~e~~~~Lksl~~-----------------~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tp 76 (351)
T KOG2035|consen 14 ELIYHEELANLLKSLSS-----------------TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTP 76 (351)
T ss_pred hcccHHHHHHHHHHhcc-----------------cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecC
Confidence 35566666677766554 24567889999999999998877765310 1112233445433
Q ss_pred CCC---------------------CCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceE-EEEecCCCCCCcccH
Q 001995 255 SEP---------------------FDDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKF-FLVLDDVWTEEPQNW 312 (985)
Q Consensus 255 ~~~---------------------~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdv~~~~~~~~ 312 (985)
+.. ...+.+.++++++.+....-. .-..+.| ++|+-.++.-..+.-
T Consensus 77 S~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie------------~~~qr~fKvvvi~ead~LT~dAQ 144 (351)
T KOG2035|consen 77 SKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIE------------TQGQRPFKVVVINEADELTRDAQ 144 (351)
T ss_pred CCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchh------------hccccceEEEEEechHhhhHHHH
Confidence 221 112344555555443321100 0012334 455555544333444
Q ss_pred HHHHhhhcCCCCCcEEEEEcCch--hhHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHh
Q 001995 313 EQLLGCLRCGSKESRILVTTRNE--KVAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSK 390 (985)
Q Consensus 313 ~~l~~~l~~~~~gs~ilvTtR~~--~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~I~~~ 390 (985)
..++.....-.+.+|+|+..-+. -+...-.-. -.+++...+++|....+.+..-..+- ..+ ++++.+|+++
T Consensus 145 ~aLRRTMEkYs~~~RlIl~cns~SriIepIrSRC--l~iRvpaps~eeI~~vl~~v~~kE~l--~lp---~~~l~rIa~k 217 (351)
T KOG2035|consen 145 HALRRTMEKYSSNCRLILVCNSTSRIIEPIRSRC--LFIRVPAPSDEEITSVLSKVLKKEGL--QLP---KELLKRIAEK 217 (351)
T ss_pred HHHHHHHHHHhcCceEEEEecCcccchhHHhhhe--eEEeCCCCCHHHHHHHHHHHHHHhcc--cCc---HHHHHHHHHH
Confidence 45555555555667777654332 122111111 46788999999999988887654432 122 5789999999
Q ss_pred cCCChh-HHHHHHhhhhcC----------CChHHHHHHHHhhhhh
Q 001995 391 CKGLPL-AVKTLGSLLRFK----------GKIEEWQRVLENELWE 424 (985)
Q Consensus 391 ~~GlPL-ai~~~~~~L~~~----------~~~~~w~~~~~~~~~~ 424 (985)
++|.-- ||-++ ..++-+ -...+|+-.+.+....
T Consensus 218 S~~nLRrAllml-E~~~~~n~~~~a~~~~i~~~dWe~~i~e~a~~ 261 (351)
T KOG2035|consen 218 SNRNLRRALLML-EAVRVNNEPFTANSQVIPKPDWEIYIQEIARV 261 (351)
T ss_pred hcccHHHHHHHH-HHHHhccccccccCCCCCCccHHHHHHHHHHH
Confidence 998643 44333 222111 1246888877764443
No 365
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.46 E-value=0.022 Score=51.69 Aligned_cols=28 Identities=36% Similarity=0.596 Sum_probs=19.1
Q ss_pred EEEEccCCchHHHHHHHHhcchhhhccCCc
Q 001995 219 ISITGMGGIGKTTLAKLIFNDNEVRNHFNE 248 (985)
Q Consensus 219 v~I~G~gGiGKTtLa~~v~~~~~~~~~f~~ 248 (985)
|.|+|.+|+||||+|+.++. .+...|..
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EEE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCceeE
Confidence 67999999999999999998 56666643
No 366
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.45 E-value=0.087 Score=50.46 Aligned_cols=21 Identities=38% Similarity=0.699 Sum_probs=19.5
Q ss_pred EEEEEccCCchHHHHHHHHhc
Q 001995 218 IISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 218 vv~I~G~gGiGKTtLa~~v~~ 238 (985)
+|.|+|.+|+||||+|+.+..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~ 21 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEE 21 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999999987
No 367
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.44 E-value=0.19 Score=53.11 Aligned_cols=41 Identities=22% Similarity=0.311 Sum_probs=30.7
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCC
Q 001995 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSE 256 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 256 (985)
+.-+++.|.|.+|+|||++|.+++.. ....=..+++++...
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~--~a~~Ge~vlyis~Ee 74 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVT--QASRGNPVLFVTVES 74 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHH--HHhCCCcEEEEEecC
Confidence 35579999999999999999998763 212224678888764
No 368
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.44 E-value=0.072 Score=52.76 Aligned_cols=21 Identities=48% Similarity=0.710 Sum_probs=19.7
Q ss_pred EEEEEccCCchHHHHHHHHhc
Q 001995 218 IISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 218 vv~I~G~gGiGKTtLa~~v~~ 238 (985)
+|+|.|.+|+||||||+.+..
T Consensus 1 ii~i~G~sgsGKttla~~l~~ 21 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSN 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 369
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.39 E-value=0.027 Score=57.12 Aligned_cols=85 Identities=21% Similarity=0.238 Sum_probs=54.7
Q ss_pred ccCCCCCeEecCCCCCccccchhhcCCCCCcEeeccCc--ccccccchhhhhccccceeecccccccccccCCCcCCCCC
Q 001995 622 KKLIHLRYLALGENPWIKELPEALCELCNLQTLDVSLC--HYLKRLPERIGQLINLRHLMNSKEEWSRLSYMPRGMERLT 699 (985)
Q Consensus 622 ~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~--~~l~~lp~~i~~L~~L~~L~l~~~~~~~l~~lp~~i~~l~ 699 (985)
..+..|++|++.++. ++.+-. +-.|++|+.|+++.| .....++.-..++++|++|++++|+...+..++ ....+.
T Consensus 40 d~~~~le~ls~~n~g-ltt~~~-~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~ 116 (260)
T KOG2739|consen 40 DEFVELELLSVINVG-LTTLTN-FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKELE 116 (260)
T ss_pred ccccchhhhhhhccc-eeeccc-CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-hhhhhc
Confidence 344556666666665 443322 446889999999998 544556655666799999999988764333332 244555
Q ss_pred CCCccCceEe
Q 001995 700 GLRTLGAFVA 709 (985)
Q Consensus 700 ~L~~L~~~~~ 709 (985)
+|..|.++.+
T Consensus 117 nL~~Ldl~n~ 126 (260)
T KOG2739|consen 117 NLKSLDLFNC 126 (260)
T ss_pred chhhhhcccC
Confidence 6666666544
No 370
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=94.38 E-value=0.17 Score=56.27 Aligned_cols=48 Identities=19% Similarity=0.064 Sum_probs=29.7
Q ss_pred HHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHh---cccCcHHHHHHHHHH
Q 001995 22 AAGVRLIAGAEEEVENLHRRFHLIKAVVEDAEK---RQMKETAVRVWLDDL 69 (985)
Q Consensus 22 ~~e~~~~~~~~~~~~~L~~~l~~i~~~l~~a~~---~~~~~~~~~~wl~~l 69 (985)
.+|.....-+++--+..-+.-..+++.+++||- +..-.+..+.|.+.-
T Consensus 178 ln~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~ 228 (580)
T COG4618 178 LNERATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFN 228 (580)
T ss_pred HHHHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHH
Confidence 344444455555556666666677777777774 345556677888763
No 371
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=94.37 E-value=0.29 Score=47.50 Aligned_cols=118 Identities=14% Similarity=0.148 Sum_probs=65.0
Q ss_pred CEEEEEEccCCchHHHHHHHHhcchhhhccCCceE--EEEeCCCCCHHHHHHHHHHHhc----CCC--CCCCC-------
Q 001995 216 PTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKI--WVCVSEPFDDIRIAKAILESLK----GSA--TNAVE------- 280 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~--wv~~~~~~~~~~~~~~i~~~l~----~~~--~~~~~------- 280 (985)
...|-|++..|.||||.|..++-.. ....+...+ |+.-.........+..+ .+. +.. ....+
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra-~~~g~~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~~~ 81 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRA-LGHGKKVGVIQFIKGAWPNGERAAFEPH--GVEFQVMGTGFTWETQNREADTAI 81 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHH-HHCCCeEEEEEEecCCcccChHHHHHhc--CcEEEECCCCCeecCCCcHHHHHH
Confidence 3588888889999999998887632 222232211 33333233444444443 111 010 00111
Q ss_pred HHHHHHHHHHHhc-CceEEEEecCCC---CCCcccHHHHHhhhcCCCCCcEEEEEcCchh
Q 001995 281 SETVLKQLRESIE-GKKFFLVLDDVW---TEEPQNWEQLLGCLRCGSKESRILVTTRNEK 336 (985)
Q Consensus 281 ~~~~~~~l~~~l~-~k~~LlVlDdv~---~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~ 336 (985)
..+..+..++.+. +.-=|||||.+- +...-..+++...+.....+..||+|-|+..
T Consensus 82 ~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p 141 (173)
T TIGR00708 82 AKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCP 141 (173)
T ss_pred HHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCC
Confidence 1112333344444 344599999973 1223345667777777777789999999763
No 372
>PRK06762 hypothetical protein; Provisional
Probab=94.37 E-value=0.03 Score=54.89 Aligned_cols=22 Identities=50% Similarity=0.661 Sum_probs=20.7
Q ss_pred EEEEEEccCCchHHHHHHHHhc
Q 001995 217 TIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
.+|.|+|++|+||||+|+.+.+
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~ 24 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQE 24 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999987
No 373
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=94.37 E-value=0.076 Score=53.89 Aligned_cols=86 Identities=20% Similarity=0.286 Sum_probs=50.8
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC-CHHHHHHHHHHHhcCC-------CCCCCCHHH---
Q 001995 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF-DDIRIAKAILESLKGS-------ATNAVESET--- 283 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~--- 283 (985)
+-..++|.|.+|+|||+|+..+.++. .-+.++++-+.+.. ...++.+.+...-... ..+......
T Consensus 14 ~Gqr~~I~g~~g~GKt~Ll~~i~~~~----~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~ 89 (215)
T PF00006_consen 14 RGQRIGIFGGAGVGKTVLLQEIANNQ----DADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRA 89 (215)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHC----TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHH
T ss_pred cCCEEEEEcCcccccchhhHHHHhcc----cccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhh
Confidence 33689999999999999999998843 12334777776543 4445555553321111 111111111
Q ss_pred --HHHHHHHHh--cCceEEEEecCC
Q 001995 284 --VLKQLRESI--EGKKFFLVLDDV 304 (985)
Q Consensus 284 --~~~~l~~~l--~~k~~LlVlDdv 304 (985)
..-.+.+++ +++.+|+++||+
T Consensus 90 ~~~a~t~AEyfrd~G~dVlli~Dsl 114 (215)
T PF00006_consen 90 PYTALTIAEYFRDQGKDVLLIIDSL 114 (215)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEEETH
T ss_pred hccchhhhHHHhhcCCceeehhhhh
Confidence 111233333 699999999998
No 374
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.34 E-value=0.033 Score=56.82 Aligned_cols=25 Identities=44% Similarity=0.660 Sum_probs=22.5
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhc
Q 001995 214 QRPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
+...+|+|+|++|+||||||+.++.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHH
Confidence 3457999999999999999999986
No 375
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.33 E-value=0.25 Score=57.52 Aligned_cols=50 Identities=22% Similarity=0.306 Sum_probs=35.1
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHH
Q 001995 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAI 267 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 267 (985)
..-+++.|.|.+|+|||||+.+++.. ...+=..+++++..+ +..++.+.+
T Consensus 261 ~~gs~~li~G~~G~GKt~l~~~f~~~--~~~~ge~~~y~s~eE--s~~~i~~~~ 310 (484)
T TIGR02655 261 FKDSIILATGATGTGKTLLVSKFLEN--ACANKERAILFAYEE--SRAQLLRNA 310 (484)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEEeeC--CHHHHHHHH
Confidence 45689999999999999999999874 222334567776544 455555553
No 376
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=94.33 E-value=0.23 Score=51.54 Aligned_cols=76 Identities=21% Similarity=0.160 Sum_probs=43.2
Q ss_pred EEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCC--CCHHHHHHHHHHHh----cCCC--CCCCCHHHHHHHHH
Q 001995 218 IISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEP--FDDIRIAKAILESL----KGSA--TNAVESETVLKQLR 289 (985)
Q Consensus 218 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l----~~~~--~~~~~~~~~~~~l~ 289 (985)
+|+|.|..|+||||+|+.+... .+..=..++.++...- .+....-..+.... .-+. ++..+.+.+.+.++
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~--l~~~g~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l~ 78 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHI--FAREGIHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELFR 78 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHH--HHhcCCceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHHH
Confidence 5899999999999999988862 2221112344443221 22222222222221 1122 56677788888888
Q ss_pred HHhcCc
Q 001995 290 ESIEGK 295 (985)
Q Consensus 290 ~~l~~k 295 (985)
.+.+++
T Consensus 79 ~L~~g~ 84 (277)
T cd02029 79 TYGETG 84 (277)
T ss_pred HHHcCC
Confidence 777654
No 377
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.33 E-value=0.45 Score=46.58 Aligned_cols=22 Identities=45% Similarity=0.620 Sum_probs=20.0
Q ss_pred EEEEEEccCCchHHHHHHHHhc
Q 001995 217 TIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
+.|.+.|.+|+||||+|++++.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak 23 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAK 23 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHH
Confidence 4678899999999999999987
No 378
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.33 E-value=0.028 Score=59.68 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=20.0
Q ss_pred EEEEEEccCCchHHHHHHHHhc
Q 001995 217 TIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
+-|.++|+.|+|||++++.+..
T Consensus 34 ~pvLl~G~~GtGKT~li~~~l~ 55 (272)
T PF12775_consen 34 RPVLLVGPSGTGKTSLIQNFLS 55 (272)
T ss_dssp EEEEEESSTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCchhHHHHhhhc
Confidence 5679999999999999999886
No 379
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=94.32 E-value=0.16 Score=51.66 Aligned_cols=62 Identities=26% Similarity=0.281 Sum_probs=38.1
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEE-------EEeCCCCCHHHH--HHHHHHHhcCCC
Q 001995 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIW-------VCVSEPFDDIRI--AKAILESLKGSA 275 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~w-------v~~~~~~~~~~~--~~~i~~~l~~~~ 275 (985)
.++.+|.++||+|+||||..+.++.+..-+..-+.++= +...-+.+.+.. ++.+.++....+
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGP 87 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGP 87 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCC
Confidence 45678999999999999999999874322222122221 112233344443 667788776544
No 380
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.32 E-value=0.2 Score=56.09 Aligned_cols=88 Identities=16% Similarity=0.219 Sum_probs=45.7
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCC-CCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc
Q 001995 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSE-PFDDIRIAKAILESLKGSATNAVESETVLKQLRESIE 293 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 293 (985)
...+++++|+.|+||||++..++...........+.++.... .....+-+....+.++.......+..++...+. .+.
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~-~l~ 268 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLH-ELR 268 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHH-Hhc
Confidence 457999999999999999998876321122223344444322 223333344445554433222233333333332 233
Q ss_pred CceEEEEecCC
Q 001995 294 GKKFFLVLDDV 304 (985)
Q Consensus 294 ~k~~LlVlDdv 304 (985)
++ -++++|-.
T Consensus 269 ~~-d~VLIDTa 278 (420)
T PRK14721 269 GK-HMVLIDTV 278 (420)
T ss_pred CC-CEEEecCC
Confidence 33 45666765
No 381
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.30 E-value=0.33 Score=58.82 Aligned_cols=124 Identities=21% Similarity=0.291 Sum_probs=75.1
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 258 (985)
.++|-++.+..|.+.+.....+.++ ......+.+.|+.|+|||-||+.++. .+-+..+..+-++.++
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~---------~~~~awflflGpdgvGKt~lAkaLA~--~~Fgse~~~IriDmse-- 629 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLKD---------PNPDAWFLFLGPDGVGKTELAKALAE--YVFGSEENFIRLDMSE-- 629 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccCC---------CCCCeEEEEECCCchhHHHHHHHHHH--HHcCCccceEEechhh--
Confidence 4788888888888888765421110 12567899999999999999999987 3433333344443332
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceE-EEEecCCCCCCcccHHHHHhhhcCC
Q 001995 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKF-FLVLDDVWTEEPQNWEQLLGCLRCG 322 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdv~~~~~~~~~~l~~~l~~~ 322 (985)
... ..++.+.++.-. ..+....|.+.++.++| +|.||||...+.+....+...+..+
T Consensus 630 ----~~e--vskligsp~gyv-G~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~G 687 (898)
T KOG1051|consen 630 ----FQE--VSKLIGSPPGYV-GKEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDRG 687 (898)
T ss_pred ----hhh--hhhccCCCcccc-cchhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHhcC
Confidence 222 333333322111 11223356666777765 6678999776666666666666543
No 382
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=94.26 E-value=0.15 Score=53.37 Aligned_cols=90 Identities=19% Similarity=0.193 Sum_probs=54.9
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhh--hccCCceEEEEeCCCCC-HHHHHHHHHHHhcCC-------CCCCCCHHH-
Q 001995 215 RPTIISITGMGGIGKTTLAKLIFNDNEV--RNHFNEKIWVCVSEPFD-DIRIAKAILESLKGS-------ATNAVESET- 283 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~--~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~-------~~~~~~~~~- 283 (985)
+-+.++|.|-.|+|||+|+..+.++... +++-+.++++-+.+... ..++...+...=... ..+......
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~ 147 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERI 147 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHH
Confidence 4467899999999999999998875321 12245678888876543 445555554432111 111111111
Q ss_pred ----HHHHHHHHh--c-CceEEEEecCC
Q 001995 284 ----VLKQLRESI--E-GKKFFLVLDDV 304 (985)
Q Consensus 284 ----~~~~l~~~l--~-~k~~LlVlDdv 304 (985)
..-.+.+++ + ++++|+++||+
T Consensus 148 ~a~~~a~aiAEyfrd~~g~~VLl~~D~l 175 (276)
T cd01135 148 ITPRMALTTAEYLAYEKGKHVLVILTDM 175 (276)
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEEcCh
Confidence 223345555 3 78999999999
No 383
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.21 E-value=0.27 Score=56.54 Aligned_cols=167 Identities=20% Similarity=0.217 Sum_probs=82.3
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 258 (985)
++-|-|+-+.+|.+.+.-+-.. .++... -+-..++-|..+|++|.|||++|+.+++ +-...| +.+..+
T Consensus 435 dIGGlE~lK~elq~~V~~p~~~---pe~F~r-~Gi~ppkGVLlyGPPGC~KT~lAkalAn--e~~~nF-----lsvkgp- 502 (693)
T KOG0730|consen 435 DIGGLEELKRELQQAVEWPLKH---PEKFAR-FGISPPKGVLLYGPPGCGKTLLAKALAN--EAGMNF-----LSVKGP- 502 (693)
T ss_pred hccCHHHHHHHHHHHHhhhhhc---hHHHHH-hcCCCCceEEEECCCCcchHHHHHHHhh--hhcCCe-----eeccCH-
Confidence 5667877777776555432200 000000 0124567899999999999999999999 444444 222211
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCCC-----------cccHHHHHhhhcCCCCCcE
Q 001995 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTEE-----------PQNWEQLLGCLRCGSKESR 327 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-----------~~~~~~l~~~l~~~~~gs~ 327 (985)
+++.. ........+.+.+++.-+--+.++.||.++... ......++.-+........
T Consensus 503 -------EL~sk-----~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~ 570 (693)
T KOG0730|consen 503 -------ELFSK-----YVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKN 570 (693)
T ss_pred -------HHHHH-----hcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCc
Confidence 11111 111223333444444444567888888874311 1112223222222222222
Q ss_pred EEE---EcCchhhHHhh-cCc-ccccccCCCCChHHHHHHHHHHhcC
Q 001995 328 ILV---TTRNEKVAIAI-GTT-KFNIIPIELLSDEDCWSIFSQLALS 369 (985)
Q Consensus 328 ilv---TtR~~~v~~~~-~~~-~~~~~~l~~L~~~e~~~Lf~~~~~~ 369 (985)
|+| |-|...+...+ ... -...+.++.-+.+.-.++|+.++-.
T Consensus 571 V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kk 617 (693)
T KOG0730|consen 571 VLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKK 617 (693)
T ss_pred EEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhc
Confidence 333 23333333222 211 1145666666666677788887644
No 384
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.20 E-value=0.06 Score=49.77 Aligned_cols=24 Identities=33% Similarity=0.480 Sum_probs=21.8
Q ss_pred CEEEEEEccCCchHHHHHHHHhcc
Q 001995 216 PTIISITGMGGIGKTTLAKLIFND 239 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~ 239 (985)
..+|.+.|.-|+||||+++.++..
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 358999999999999999999974
No 385
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.17 E-value=0.13 Score=53.72 Aligned_cols=78 Identities=17% Similarity=0.365 Sum_probs=46.3
Q ss_pred EEEEEEccCCchHHHHHHHHhcchh--hhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcC
Q 001995 217 TIISITGMGGIGKTTLAKLIFNDNE--VRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEG 294 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~~~~--~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 294 (985)
++|.++|++|.|||+|++..++.-. ..+.|....-+.++.. .+.+..-.. ...-...+..++.+.+.+
T Consensus 178 RliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh--------sLFSKWFsE--SgKlV~kmF~kI~ELv~d 247 (423)
T KOG0744|consen 178 RLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH--------SLFSKWFSE--SGKLVAKMFQKIQELVED 247 (423)
T ss_pred eEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh--------HHHHHHHhh--hhhHHHHHHHHHHHHHhC
Confidence 7999999999999999999998633 3455665555555432 111111111 112233445555565554
Q ss_pred c--eEEEEecCC
Q 001995 295 K--KFFLVLDDV 304 (985)
Q Consensus 295 k--~~LlVlDdv 304 (985)
+ =+.+.+|.|
T Consensus 248 ~~~lVfvLIDEV 259 (423)
T KOG0744|consen 248 RGNLVFVLIDEV 259 (423)
T ss_pred CCcEEEEEeHHH
Confidence 4 355667888
No 386
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.17 E-value=0.17 Score=53.38 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=23.7
Q ss_pred CCCCEEEEEEccCCchHHHHHHHHhc
Q 001995 213 TQRPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 213 ~~~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
..+..+|.|+|.+|+|||||+..+.+
T Consensus 101 ~~~~~~v~l~G~pGsGKTTLl~~l~~ 126 (290)
T PRK10463 101 ARKQLVLNLVSSPGSGKTTLLTETLM 126 (290)
T ss_pred hcCCeEEEEECCCCCCHHHHHHHHHH
Confidence 35788999999999999999999987
No 387
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=94.17 E-value=0.13 Score=54.69 Aligned_cols=52 Identities=23% Similarity=0.277 Sum_probs=39.9
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHH
Q 001995 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILE 269 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 269 (985)
+.-+++.|+|.+|+|||++|.++.. +.......++||+..+ +...+.+...+
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~--~~~~~ge~vlyvs~~e--~~~~l~~~~~~ 72 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLY--EGAREGEPVLYVSTEE--SPEELLENARS 72 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHH--HHHhcCCcEEEEEecC--CHHHHHHHHHH
Confidence 4668999999999999999999998 4555678899998775 34444444443
No 388
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=94.16 E-value=0.073 Score=54.47 Aligned_cols=50 Identities=30% Similarity=0.373 Sum_probs=28.9
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHH
Q 001995 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRI 263 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 263 (985)
++..+|+|+|++|+|||||...+....+.+++=-.++=|+-|++++--.+
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAl 76 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGAL 76 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---S
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcc
Confidence 46789999999999999999998874332222223444444555543333
No 389
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=94.14 E-value=0.065 Score=55.60 Aligned_cols=55 Identities=29% Similarity=0.332 Sum_probs=38.4
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHH
Q 001995 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAIL 268 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 268 (985)
++..+|+|+|.||+|||||.-.+......+++=-.++=|+-|++++--.++-+=+
T Consensus 49 G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRi 103 (323)
T COG1703 49 GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRI 103 (323)
T ss_pred CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHh
Confidence 6778999999999999999988887443344433455566677776555544433
No 390
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=94.13 E-value=0.094 Score=49.13 Aligned_cols=44 Identities=27% Similarity=0.348 Sum_probs=32.2
Q ss_pred EEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCC
Q 001995 218 IISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGS 274 (985)
Q Consensus 218 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 274 (985)
+|.|-|++|.||||+|+.++++ ..-. +| +.-.++++|++..+.+
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~--~gl~-----~v------saG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEH--LGLK-----LV------SAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHH--hCCc-----ee------eccHHHHHHHHHcCCC
Confidence 6899999999999999999983 2111 12 2346788888887654
No 391
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=94.12 E-value=0.31 Score=50.83 Aligned_cols=99 Identities=13% Similarity=0.162 Sum_probs=69.8
Q ss_pred EEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCce
Q 001995 217 TIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKK 296 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 296 (985)
+.+.++|+.|+|||+-++.+++. .+..+-+..+..+....+...+......... .........+...+.+..
T Consensus 95 ~l~~vyg~~g~gKt~a~~~y~~s------~p~~~l~~~~p~~~a~~~i~~i~~~~~~~~~--~~~~d~~~~~~~~l~~~~ 166 (297)
T COG2842 95 SLVVVYGYAGLGKTQAAKNYAPS------NPNALLIEADPSYTALVLILIICAAAFGATD--GTINDLTERLMIRLRDTV 166 (297)
T ss_pred ceEEEeccccchhHHHHHhhccc------CccceeecCChhhHHHHHHHHHHHHHhcccc--hhHHHHHHHHHHHHccCc
Confidence 48999999999999999999983 3334445677777777777777666554322 223344555666668889
Q ss_pred EEEEecCCCCCCcccHHHHHhhhcCCC
Q 001995 297 FFLVLDDVWTEEPQNWEQLLGCLRCGS 323 (985)
Q Consensus 297 ~LlVlDdv~~~~~~~~~~l~~~l~~~~ 323 (985)
-+++.|+........++.++......+
T Consensus 167 ~~iivDEA~~L~~~ale~lr~i~d~~G 193 (297)
T COG2842 167 RLIIVDEADRLPYRALEELRRIHDKTG 193 (297)
T ss_pred ceeeeehhhccChHHHHHHHHHHHhhC
Confidence 999999997777777777776554433
No 392
>PTZ00494 tuzin-like protein; Provisional
Probab=94.11 E-value=1.4 Score=48.47 Aligned_cols=166 Identities=13% Similarity=0.116 Sum_probs=99.2
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 258 (985)
.+|.|+.|-..+...|...+ ...++++.+.|.-|.||++|.+.....+. -..++|++....
T Consensus 372 ~~V~R~~eE~~vRqvL~qld--------------~aHPRIvV~TG~~GcGKSslcRsAvrkE~-----~paV~VDVRg~E 432 (664)
T PTZ00494 372 FEVRREDEEALVRSVLTQMA--------------PSHPRIVALAGGSGGGRCVPCRRAVRVEG-----VALVHVDVGGTE 432 (664)
T ss_pred cccchhhHHHHHHHHHhhcc--------------CCCCcEEEEecCCCCCchHHHHHHHHHcC-----CCeEEEEecCCc
Confidence 79999999888888887655 46789999999999999999988876322 246778887654
Q ss_pred CHHHHHHHHHHHhcCCCCCCC--CHHHHHHHHH---HHhcCceEEEEecCCCCCC-cccHHHHHhhhcCCCCCcEEEEEc
Q 001995 259 DDIRIAKAILESLKGSATNAV--ESETVLKQLR---ESIEGKKFFLVLDDVWTEE-PQNWEQLLGCLRCGSKESRILVTT 332 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~--~~~~~~~~l~---~~l~~k~~LlVlDdv~~~~-~~~~~~l~~~l~~~~~gs~ilvTt 332 (985)
+-++.|.+.++-...+.. -++-+.+..+ ....++.-+||+-==...+ ...+.+. ..|.....-+.|++--
T Consensus 433 ---DtLrsVVKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~-vaLacDrRlCHvv~EV 508 (664)
T PTZ00494 433 ---DTLRSVVRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEV-VSLVSDCQACHIVLAV 508 (664)
T ss_pred ---chHHHHHHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHH-HHHHccchhheeeeec
Confidence 457788888876543321 1222222222 2234565566653211111 1122222 1233334445666654
Q ss_pred CchhhHHhhc-CcccccccCCCCChHHHHHHHHHHh
Q 001995 333 RNEKVAIAIG-TTKFNIIPIELLSDEDCWSIFSQLA 367 (985)
Q Consensus 333 R~~~v~~~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~ 367 (985)
-.+.+..... -....-|.+.+++.++|.++..+..
T Consensus 509 plESLT~~n~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 509 PMKALTPLNVSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred hHhhhchhhccCccceeEecCCcCHHHHHHHHhccc
Confidence 4333221111 1112468899999999998877653
No 393
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=94.10 E-value=0.52 Score=47.75 Aligned_cols=179 Identities=18% Similarity=0.196 Sum_probs=89.6
Q ss_pred ceecchhhHHH---HHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeC
Q 001995 179 EIRGRNHLQNK---VASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVS 255 (985)
Q Consensus 179 ~~vGr~~~~~~---l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 255 (985)
+++|.++...+ |++.|..+. .. ++-.++-|..+|++|.|||.+|+++++.. +..| +-|.+.
T Consensus 122 dViGqEeAK~kcrli~~yLenPe----------~F-g~WAPknVLFyGppGTGKTm~Akalane~--kvp~---l~vkat 185 (368)
T COG1223 122 DVIGQEEAKRKCRLIMEYLENPE----------RF-GDWAPKNVLFYGPPGTGKTMMAKALANEA--KVPL---LLVKAT 185 (368)
T ss_pred hhhchHHHHHHHHHHHHHhhChH----------Hh-cccCcceeEEECCCCccHHHHHHHHhccc--CCce---EEechH
Confidence 57888776543 556665432 00 12456789999999999999999999943 2222 112111
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCCC------------cccHHHHHhhhc--C
Q 001995 256 EPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTEE------------PQNWEQLLGCLR--C 321 (985)
Q Consensus 256 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~------------~~~~~~l~~~l~--~ 321 (985)
+ -|-+..+ ....++.+...+.-+.-++++.+|.++-.. .+..+.++.-+. .
T Consensus 186 ------~---liGehVG------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~ 250 (368)
T COG1223 186 ------E---LIGEHVG------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIK 250 (368)
T ss_pred ------H---HHHHHhh------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcc
Confidence 1 1111111 001111111222224568999999874211 111222332232 2
Q ss_pred CCCCcEEEEEcCchhhHH-hhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCC
Q 001995 322 GSKESRILVTTRNEKVAI-AIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGL 394 (985)
Q Consensus 322 ~~~gs~ilvTtR~~~v~~-~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~I~~~~~Gl 394 (985)
.+.|...|-.|-..+... .....-..-++..--+++|-.+++...+-.-..+ .+.-.+.++++.+|+
T Consensus 251 eneGVvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plp------v~~~~~~~~~~t~g~ 318 (368)
T COG1223 251 ENEGVVTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLP------VDADLRYLAAKTKGM 318 (368)
T ss_pred cCCceEEEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCc------cccCHHHHHHHhCCC
Confidence 245655666665554332 2222111345555667788888887765322111 111145566666665
No 394
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=94.09 E-value=0.081 Score=56.80 Aligned_cols=84 Identities=25% Similarity=0.230 Sum_probs=51.5
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCC-----CCCCCHHHHHHHH
Q 001995 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSA-----TNAVESETVLKQL 288 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l 288 (985)
+.-+++-|+|..|+||||||..+... ....-..++||+....++... ++.++.+. ......++....+
T Consensus 51 p~G~ivEi~G~~ssGKttLaL~~ia~--~q~~g~~~a~ID~e~~ld~~~-----a~~lGvdl~rllv~~P~~~E~al~~~ 123 (322)
T PF00154_consen 51 PRGRIVEIYGPESSGKTTLALHAIAE--AQKQGGICAFIDAEHALDPEY-----AESLGVDLDRLLVVQPDTGEQALWIA 123 (322)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHH--HHHTT-EEEEEESSS---HHH-----HHHTT--GGGEEEEE-SSHHHHHHHH
T ss_pred ccCceEEEeCCCCCchhhhHHHHHHh--hhcccceeEEecCcccchhhH-----HHhcCccccceEEecCCcHHHHHHHH
Confidence 45579999999999999999998873 333344588999877666533 33343321 1123345555555
Q ss_pred HHHhc-CceEEEEecCC
Q 001995 289 RESIE-GKKFFLVLDDV 304 (985)
Q Consensus 289 ~~~l~-~k~~LlVlDdv 304 (985)
.+.++ +.--++|+|.|
T Consensus 124 e~lirsg~~~lVVvDSv 140 (322)
T PF00154_consen 124 EQLIRSGAVDLVVVDSV 140 (322)
T ss_dssp HHHHHTTSESEEEEE-C
T ss_pred HHHhhcccccEEEEecC
Confidence 56554 44568899998
No 395
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.08 E-value=0.22 Score=59.67 Aligned_cols=88 Identities=14% Similarity=0.177 Sum_probs=47.5
Q ss_pred CEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCC-CCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcC
Q 001995 216 PTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSE-PFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEG 294 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 294 (985)
..|++++|+.|+||||.+.+++...........+..+.... .....+.++...+.++.......+.+++...+.+ +.+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~-~~~ 263 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAA-LGD 263 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHH-hcC
Confidence 47999999999999999999887422121112444554322 1223445555555554433223344444444432 233
Q ss_pred ceEEEEecCCC
Q 001995 295 KKFFLVLDDVW 305 (985)
Q Consensus 295 k~~LlVlDdv~ 305 (985)
+ =+|++|=.-
T Consensus 264 ~-D~VLIDTAG 273 (767)
T PRK14723 264 K-HLVLIDTVG 273 (767)
T ss_pred C-CEEEEeCCC
Confidence 3 355666553
No 396
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.07 E-value=0.24 Score=49.37 Aligned_cols=24 Identities=38% Similarity=0.603 Sum_probs=21.5
Q ss_pred CEEEEEEccCCchHHHHHHHHhcc
Q 001995 216 PTIISITGMGGIGKTTLAKLIFND 239 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~ 239 (985)
-.+++|+|..|.|||||++.++.-
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~ 49 (182)
T cd03215 26 GEIVGIAGLVGNGQTELAEALFGL 49 (182)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999873
No 397
>PRK05973 replicative DNA helicase; Provisional
Probab=94.04 E-value=0.23 Score=51.13 Aligned_cols=49 Identities=10% Similarity=0.150 Sum_probs=33.5
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHH
Q 001995 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAI 267 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 267 (985)
.-.++.|.|.+|+|||++|.+++...- + .=..+++++.... ..++...+
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a-~-~Ge~vlyfSlEes--~~~i~~R~ 111 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAM-K-SGRTGVFFTLEYT--EQDVRDRL 111 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH-h-cCCeEEEEEEeCC--HHHHHHHH
Confidence 446999999999999999999876422 2 2235677766543 44554444
No 398
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=94.04 E-value=0.29 Score=51.72 Aligned_cols=113 Identities=18% Similarity=0.112 Sum_probs=61.2
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEE---eCCCCCHHHHHHHHHHHhcCCCC-------CC-CCHHH
Q 001995 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVC---VSEPFDDIRIAKAILESLKGSAT-------NA-VESET 283 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~---~~~~~~~~~~~~~i~~~l~~~~~-------~~-~~~~~ 283 (985)
+..-++|+|..|.|||||.+.++.. .. .....+++. +...... .++......-+. +. .....
T Consensus 110 ~~~~~~i~g~~g~GKttl~~~l~~~--~~-~~~G~i~~~g~~v~~~d~~----~ei~~~~~~~~q~~~~~r~~v~~~~~k 182 (270)
T TIGR02858 110 RVLNTLIISPPQCGKTTLLRDLARI--LS-TGISQLGLRGKKVGIVDER----SEIAGCVNGVPQHDVGIRTDVLDGCPK 182 (270)
T ss_pred CeeEEEEEcCCCCCHHHHHHHHhCc--cC-CCCceEEECCEEeecchhH----HHHHHHhcccccccccccccccccchH
Confidence 4568999999999999999999973 22 223344442 2111111 223222221110 00 01111
Q ss_pred HHHHHHHHhc-CceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEEEEEcCchhhHHh
Q 001995 284 VLKQLRESIE-GKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRILVTTRNEKVAIA 340 (985)
Q Consensus 284 ~~~~l~~~l~-~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~ 340 (985)
...+...+. ..+=++++|.+-. .+.+..+...+. .|..||+||-...+...
T Consensus 183 -~~~~~~~i~~~~P~villDE~~~--~e~~~~l~~~~~---~G~~vI~ttH~~~~~~~ 234 (270)
T TIGR02858 183 -AEGMMMLIRSMSPDVIVVDEIGR--EEDVEALLEALH---AGVSIIATAHGRDVEDL 234 (270)
T ss_pred -HHHHHHHHHhCCCCEEEEeCCCc--HHHHHHHHHHHh---CCCEEEEEechhHHHHH
Confidence 112222332 5788999999843 344555555543 46789999987665443
No 399
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.00 E-value=0.042 Score=55.08 Aligned_cols=24 Identities=38% Similarity=0.409 Sum_probs=21.7
Q ss_pred CCEEEEEEccCCchHHHHHHHHhc
Q 001995 215 RPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
+.++|.|+|++|+||||+|+.++.
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999999986
No 400
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=93.99 E-value=0.22 Score=55.79 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=22.3
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhc
Q 001995 214 QRPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
..+.+|.++|..|+||||+|..++.
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~ 122 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAY 122 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3468999999999999999998876
No 401
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=93.96 E-value=0.49 Score=55.53 Aligned_cols=136 Identities=19% Similarity=0.177 Sum_probs=77.3
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc
Q 001995 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIE 293 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 293 (985)
...+.+.++|++|.|||.||+++++ ....+| +.+... .++.. .-......+...+....+
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~--~~~~~f-----i~v~~~--------~l~sk-----~vGesek~ir~~F~~A~~ 333 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVAL--ESRSRF-----ISVKGS--------ELLSK-----WVGESEKNIRELFEKARK 333 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHh--hCCCeE-----EEeeCH--------HHhcc-----ccchHHHHHHHHHHHHHc
Confidence 4556899999999999999999998 333343 222210 11111 111223334444555556
Q ss_pred CceEEEEecCCCC-----C-C-c----ccHHHHHhhhc--CCCCCcEEEEEcCchhhHH-hhcC--cccccccCCCCChH
Q 001995 294 GKKFFLVLDDVWT-----E-E-P----QNWEQLLGCLR--CGSKESRILVTTRNEKVAI-AIGT--TKFNIIPIELLSDE 357 (985)
Q Consensus 294 ~k~~LlVlDdv~~-----~-~-~----~~~~~l~~~l~--~~~~gs~ilvTtR~~~v~~-~~~~--~~~~~~~l~~L~~~ 357 (985)
..++.|++|.++. . . . ....+++..+. ....+..||-||-...... .+-- .-...+.+.+-+.+
T Consensus 334 ~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~ 413 (494)
T COG0464 334 LAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLE 413 (494)
T ss_pred CCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHH
Confidence 7899999999843 1 1 0 22333444443 2233434455554443222 1111 11257888888999
Q ss_pred HHHHHHHHHhcC
Q 001995 358 DCWSIFSQLALS 369 (985)
Q Consensus 358 e~~~Lf~~~~~~ 369 (985)
+..+.|+.+...
T Consensus 414 ~r~~i~~~~~~~ 425 (494)
T COG0464 414 ERLEIFKIHLRD 425 (494)
T ss_pred HHHHHHHHHhcc
Confidence 999999988753
No 402
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.95 E-value=0.21 Score=56.92 Aligned_cols=88 Identities=13% Similarity=0.164 Sum_probs=46.9
Q ss_pred CEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCC-CCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcC
Q 001995 216 PTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSE-PFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEG 294 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 294 (985)
..|++++|+.|+||||.+.+++.....+..-..+..+.... .....+-++...+.++.......+..+....+ ..+.+
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL-~~L~d 334 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLAL-SELRN 334 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHH-HhccC
Confidence 47999999999999999999987322222122345555432 12333444444555443322222222222222 22344
Q ss_pred ceEEEEecCCC
Q 001995 295 KKFFLVLDDVW 305 (985)
Q Consensus 295 k~~LlVlDdv~ 305 (985)
+ -.+++|-.-
T Consensus 335 ~-d~VLIDTaG 344 (484)
T PRK06995 335 K-HIVLIDTIG 344 (484)
T ss_pred C-CeEEeCCCC
Confidence 3 477778764
No 403
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=93.92 E-value=0.21 Score=56.04 Aligned_cols=88 Identities=17% Similarity=0.149 Sum_probs=48.9
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCC-------CCCCCCHHH----
Q 001995 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGS-------ATNAVESET---- 283 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~-------~~~~~~~~~---- 283 (985)
.-..++|+|..|+|||||++.+.... . ....++...-.......++....+..-+.. ..+......
T Consensus 139 ~Gq~i~I~G~sG~GKTtLl~~I~~~~--~-~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~ 215 (418)
T TIGR03498 139 RGQRLGIFAGSGVGKSTLLSMLARNT--D-ADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAA 215 (418)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCC--C-CCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHH
Confidence 34689999999999999999888732 1 122222222222333444555444332211 111111111
Q ss_pred -HHHHHHHHh--cCceEEEEecCCC
Q 001995 284 -VLKQLRESI--EGKKFFLVLDDVW 305 (985)
Q Consensus 284 -~~~~l~~~l--~~k~~LlVlDdv~ 305 (985)
..-.+.+++ +++.+||++||+-
T Consensus 216 ~~a~~iAEyfrd~G~~Vll~~DslT 240 (418)
T TIGR03498 216 YTATAIAEYFRDQGKDVLLLMDSVT 240 (418)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchh
Confidence 222345555 5899999999983
No 404
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.91 E-value=0.22 Score=50.47 Aligned_cols=24 Identities=42% Similarity=0.555 Sum_probs=21.3
Q ss_pred CEEEEEEccCCchHHHHHHHHhcc
Q 001995 216 PTIISITGMGGIGKTTLAKLIFND 239 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~ 239 (985)
-.+++|+|..|.|||||++.++..
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~i~G~ 50 (200)
T PRK13540 27 GGLLHLKGSNGAGKTTLLKLIAGL 50 (200)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 359999999999999999998763
No 405
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.91 E-value=0.0079 Score=58.32 Aligned_cols=68 Identities=15% Similarity=0.329 Sum_probs=55.9
Q ss_pred CCCCccceeeccccccccccccccccCcccccccccceeecccccCCCCC-CCCCCCCCcCeEEecCchhhh
Q 001995 882 TAFPRLETLEFLDMEKWEEWDDCEIAGGKTIMPRLRHLSICWSPELKALP-DYILGSTSLDKLLIYYSRHLN 952 (985)
Q Consensus 882 ~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~lp~L~~L~i~~c~~L~~lp-~~~~~l~~L~~L~i~~c~~l~ 952 (985)
..+++++.|.+.+|..+.+|...... +.+|+|+.|+|++|+.+++-- ..+..+++|+.|.|.+.|.+.
T Consensus 122 ~~l~~i~~l~l~~ck~~dD~~L~~l~---~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 122 RDLRSIKSLSLANCKYFDDWCLERLG---GLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYVA 190 (221)
T ss_pred hccchhhhheeccccchhhHHHHHhc---ccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhhh
Confidence 35789999999999999999874433 378999999999999999743 345778999999999998543
No 406
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.90 E-value=0.6 Score=46.79 Aligned_cols=57 Identities=9% Similarity=0.064 Sum_probs=34.5
Q ss_pred HHHHhcCceEEEEecCCCC-CCcccHHHHHhhhc-CCCCCcEEEEEcCchhhHHhhcCc
Q 001995 288 LRESIEGKKFFLVLDDVWT-EEPQNWEQLLGCLR-CGSKESRILVTTRNEKVAIAIGTT 344 (985)
Q Consensus 288 l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~-~~~~gs~ilvTtR~~~v~~~~~~~ 344 (985)
+.+.+--++-+.|||..++ .+.+....+...+. -...|+-+||.|-.+.+.......
T Consensus 155 ilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD 213 (251)
T COG0396 155 ILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPD 213 (251)
T ss_pred HHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCC
Confidence 4444445778999999864 22333433333333 123466688888888888777544
No 407
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=93.89 E-value=0.38 Score=56.02 Aligned_cols=46 Identities=20% Similarity=0.335 Sum_probs=37.8
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcc
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFND 239 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 239 (985)
+++|....++++.+.+..-. ....-|.|+|..|.||+++|+.+++.
T Consensus 220 ~iiG~S~~m~~~~~~i~~~A---------------~s~~pVLI~GE~GTGKe~~A~~IH~~ 265 (538)
T PRK15424 220 DLLGQSPQMEQVRQTILLYA---------------RSSAAVLIQGETGTGKELAAQAIHRE 265 (538)
T ss_pred heeeCCHHHHHHHHHHHHHh---------------CCCCcEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999988876433 22357899999999999999999874
No 408
>COG4240 Predicted kinase [General function prediction only]
Probab=93.89 E-value=0.21 Score=49.42 Aligned_cols=84 Identities=18% Similarity=0.214 Sum_probs=53.8
Q ss_pred CCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhc-----CCCCCCCCHHHHHHH
Q 001995 213 TQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLK-----GSATNAVESETVLKQ 287 (985)
Q Consensus 213 ~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~-----~~~~~~~~~~~~~~~ 287 (985)
.+++-+++|.|+-|+||||++..+++.-..++- +.++..+..+-+-..+-...++++.. ...+...+..-..+.
T Consensus 47 ~grPli~gisGpQGSGKStls~~i~~~L~~kg~-ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlglnV 125 (300)
T COG4240 47 RGRPLIVGISGPQGSGKSTLSALIVRLLAAKGL-ERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLNV 125 (300)
T ss_pred cCCceEEEeecCCCCchhhHHHHHHHHHHHhcc-cceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHHH
Confidence 457889999999999999999999985333332 46666666554444444445555531 123444556666666
Q ss_pred HHHHhcCceE
Q 001995 288 LRESIEGKKF 297 (985)
Q Consensus 288 l~~~l~~k~~ 297 (985)
+....+++.-
T Consensus 126 Lnai~~g~~~ 135 (300)
T COG4240 126 LNAIARGGPT 135 (300)
T ss_pred HHHHhcCCCC
Confidence 6666666643
No 409
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=93.88 E-value=0.32 Score=50.36 Aligned_cols=57 Identities=14% Similarity=0.162 Sum_probs=34.0
Q ss_pred HHHHHhcCceEEEEecCCCC-CCcccHHHHHhhhcC--CCCCcEEEEEcCchhhHHhhcC
Q 001995 287 QLRESIEGKKFFLVLDDVWT-EEPQNWEQLLGCLRC--GSKESRILVTTRNEKVAIAIGT 343 (985)
Q Consensus 287 ~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~--~~~gs~ilvTtR~~~v~~~~~~ 343 (985)
.+...|.+++=+++||.--+ -|...-.++...+.. ...|.-||+++-+-+.|.....
T Consensus 148 ~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad 207 (258)
T COG1120 148 LIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYAD 207 (258)
T ss_pred HHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCC
Confidence 35667778888899997522 111122223333331 2345669999999888776554
No 410
>PRK03839 putative kinase; Provisional
Probab=93.84 E-value=0.04 Score=54.86 Aligned_cols=21 Identities=57% Similarity=0.888 Sum_probs=19.7
Q ss_pred EEEEEccCCchHHHHHHHHhc
Q 001995 218 IISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 218 vv~I~G~gGiGKTtLa~~v~~ 238 (985)
.|.|+|++|+||||+|+.+++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~ 22 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAE 22 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999998
No 411
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=93.80 E-value=0.057 Score=65.87 Aligned_cols=24 Identities=29% Similarity=0.257 Sum_probs=21.3
Q ss_pred CCEEEEEEccCCchHHHHHHHHhc
Q 001995 215 RPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
+..++.|+|+.|.||||+.+.+.-
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~ 344 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGL 344 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHH
Confidence 347999999999999999999875
No 412
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=93.80 E-value=0.13 Score=53.32 Aligned_cols=43 Identities=30% Similarity=0.515 Sum_probs=29.6
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCC
Q 001995 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEP 257 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 257 (985)
+.-+++.|.|.+|+|||++|.+++... .+..=+.++||+..+.
T Consensus 17 p~gs~~li~G~~GsGKT~l~~q~l~~~-~~~~ge~vlyvs~ee~ 59 (226)
T PF06745_consen 17 PKGSVVLISGPPGSGKTTLALQFLYNG-LKNFGEKVLYVSFEEP 59 (226)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHH-HHHHT--EEEEESSS-
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHh-hhhcCCcEEEEEecCC
Confidence 455799999999999999999987632 1221235788877553
No 413
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.78 E-value=0.027 Score=33.87 Aligned_cols=21 Identities=33% Similarity=0.504 Sum_probs=15.3
Q ss_pred CCcEeeccCcccccccchhhhh
Q 001995 650 NLQTLDVSLCHYLKRLPERIGQ 671 (985)
Q Consensus 650 ~L~~L~l~~~~~l~~lp~~i~~ 671 (985)
+|++|||++|. ++.+|.++++
T Consensus 1 ~L~~Ldls~n~-l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNN-LTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSE-ESEEGTTTTT
T ss_pred CccEEECCCCc-CEeCChhhcC
Confidence 57888888885 7778776654
No 414
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=93.77 E-value=0.25 Score=57.64 Aligned_cols=134 Identities=19% Similarity=0.195 Sum_probs=71.1
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 258 (985)
.++|+...+.++.+.+.... .....|.|+|.+|+|||++|+.+.+.... .. ..-+-++++.-
T Consensus 139 ~lig~s~~~~~l~~~~~~~~---------------~~~~~vli~Ge~GtGK~~lA~~ih~~s~~-~~-~~~i~i~c~~~- 200 (469)
T PRK10923 139 DIIGEAPAMQDVFRIIGRLS---------------RSSISVLINGESGTGKELVAHALHRHSPR-AK-APFIALNMAAI- 200 (469)
T ss_pred cceecCHHHHHHHHHHHHHh---------------ccCCeEEEEeCCCCcHHHHHHHHHhcCCC-CC-CCeEeeeCCCC-
Confidence 68899988888887776433 23346889999999999999999874211 11 12233444332
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCCCcccHHHHHhhhcCCC-----------CCcE
Q 001995 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTEEPQNWEQLLGCLRCGS-----------KESR 327 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ 327 (985)
+...+...+...-.+........ . ...+. ....=-|+||++..........+...+..+. ...|
T Consensus 201 ~~~~~~~~lfg~~~g~~~~~~~~-~-~g~~~---~a~~Gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~r 275 (469)
T PRK10923 201 PKDLIESELFGHEKGAFTGANTI-R-QGRFE---QADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVR 275 (469)
T ss_pred CHHHHHHHhcCCCCCCCCCCCcC-C-CCCee---ECCCCEEEEeccccCCHHHHHHHHHHHhcCcEEeCCCCCeEEeeEE
Confidence 22222222211111100000000 0 00000 1112246889997766666677777665331 1238
Q ss_pred EEEEcCch
Q 001995 328 ILVTTRNE 335 (985)
Q Consensus 328 ilvTtR~~ 335 (985)
||+||...
T Consensus 276 ii~~~~~~ 283 (469)
T PRK10923 276 IIAATHQN 283 (469)
T ss_pred EEEeCCCC
Confidence 88888643
No 415
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=93.77 E-value=0.39 Score=48.76 Aligned_cols=53 Identities=25% Similarity=0.271 Sum_probs=32.3
Q ss_pred HHHHhcCceEEEEecCCCC-CCcccHH-HHHhhhcCCC-C-CcEEEEEcCchhhHHh
Q 001995 288 LRESIEGKKFFLVLDDVWT-EEPQNWE-QLLGCLRCGS-K-ESRILVTTRNEKVAIA 340 (985)
Q Consensus 288 l~~~l~~k~~LlVlDdv~~-~~~~~~~-~l~~~l~~~~-~-gs~ilvTtR~~~v~~~ 340 (985)
+.+.+..++-++++|+.-. .+..... .+...+.... . |.-||++|.+......
T Consensus 132 la~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~ 188 (204)
T cd03240 132 LAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDA 188 (204)
T ss_pred HHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhh
Confidence 4556677889999999753 2223334 4555444322 2 5568888888776543
No 416
>PRK03846 adenylylsulfate kinase; Provisional
Probab=93.75 E-value=0.14 Score=51.85 Aligned_cols=25 Identities=28% Similarity=0.514 Sum_probs=22.8
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhc
Q 001995 214 QRPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
+...+|+|+|++|+||||||+.+..
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~ 46 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEE 46 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999999987
No 417
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=93.73 E-value=0.18 Score=54.95 Aligned_cols=21 Identities=29% Similarity=0.449 Sum_probs=19.0
Q ss_pred EEEEccCCchHHHHHHHHhcc
Q 001995 219 ISITGMGGIGKTTLAKLIFND 239 (985)
Q Consensus 219 v~I~G~gGiGKTtLa~~v~~~ 239 (985)
++++|++|.||||+++.+.+.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~ 22 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSAT 22 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999873
No 418
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.71 E-value=0.22 Score=48.21 Aligned_cols=119 Identities=18% Similarity=0.184 Sum_probs=62.0
Q ss_pred EEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCce
Q 001995 217 TIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKK 296 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 296 (985)
.+++|+|..|.|||||++.+... . ......+++........ ........+.-... -...+...-.+...+...+
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~--~-~~~~G~i~~~~~~~~~~--~~~~~~~~i~~~~q-lS~G~~~r~~l~~~l~~~~ 99 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGL--L-KPTSGEILIDGKDIAKL--PLEELRRRIGYVPQ-LSGGQRQRVALARALLLNP 99 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC--C-CCCccEEEECCEEcccC--CHHHHHhceEEEee-CCHHHHHHHHHHHHHhcCC
Confidence 69999999999999999999873 2 23344555432211110 00011111111000 1111222233555566678
Q ss_pred EEEEecCCCC-CCcccHHHHHhhhcCC-CCCcEEEEEcCchhhHHhh
Q 001995 297 FFLVLDDVWT-EEPQNWEQLLGCLRCG-SKESRILVTTRNEKVAIAI 341 (985)
Q Consensus 297 ~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~ilvTtR~~~v~~~~ 341 (985)
-++++|+.-. .+......+...+... ..+.-++++|.+.......
T Consensus 100 ~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~ 146 (157)
T cd00267 100 DLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELA 146 (157)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 8999998753 2223334444444321 1245688888877665543
No 419
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=93.71 E-value=0.18 Score=59.13 Aligned_cols=133 Identities=20% Similarity=0.147 Sum_probs=71.5
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 258 (985)
.++|....++++++.+.... ..-.-|.|+|..|.||+++|+.+.+.. .+ .-..-+.+++..-.
T Consensus 205 ~~ig~s~~~~~~~~~~~~~A---------------~~~~pvlI~GE~GtGK~~lA~aiH~~s-~r-~~~pfv~inca~~~ 267 (520)
T PRK10820 205 QIVAVSPKMRQVVEQARKLA---------------MLDAPLLITGDTGTGKDLLAYACHLRS-PR-GKKPFLALNCASIP 267 (520)
T ss_pred ceeECCHHHHHHHHHHHHHh---------------CCCCCEEEECCCCccHHHHHHHHHHhC-CC-CCCCeEEeccccCC
Confidence 68999998888888775432 112348899999999999999986521 11 11122445554432
Q ss_pred CHHHHHHHHHHHhcCCCCCCCC-HHHHHHHHHHHhcCceEEEEecCCCCCCcccHHHHHhhhcCCC-----------CCc
Q 001995 259 DDIRIAKAILESLKGSATNAVE-SETVLKQLRESIEGKKFFLVLDDVWTEEPQNWEQLLGCLRCGS-----------KES 326 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs 326 (985)
...+.. .+.+....... ......-+.+ ....=.|+||+++.........+...+..+. ...
T Consensus 268 --~~~~e~---elFG~~~~~~~~~~~~~~g~~e--~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~v 340 (520)
T PRK10820 268 --DDVVES---ELFGHAPGAYPNALEGKKGFFE--QANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDV 340 (520)
T ss_pred --HHHHHH---HhcCCCCCCcCCcccCCCChhh--hcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeee
Confidence 222222 12121110000 0000000000 1223347899998776666677777775431 123
Q ss_pred EEEEEcCch
Q 001995 327 RILVTTRNE 335 (985)
Q Consensus 327 ~ilvTtR~~ 335 (985)
|||.||...
T Consensus 341 RiI~st~~~ 349 (520)
T PRK10820 341 RVICATQKN 349 (520)
T ss_pred EEEEecCCC
Confidence 788877654
No 420
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=93.70 E-value=0.28 Score=51.73 Aligned_cols=21 Identities=38% Similarity=0.737 Sum_probs=19.3
Q ss_pred EEEEEccCCchHHHHHHHHhc
Q 001995 218 IISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 218 vv~I~G~gGiGKTtLa~~v~~ 238 (985)
.|.++|++|+||||+|+.+..
T Consensus 1 LIvl~G~pGSGKST~a~~La~ 21 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAK 21 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 378999999999999999987
No 421
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=93.70 E-value=0.52 Score=51.21 Aligned_cols=53 Identities=19% Similarity=0.250 Sum_probs=31.9
Q ss_pred HHHHhcCceEEEEecCCCC-CCcccHHHHHhhhcCCCCCcEEEEEcCchhhHHh
Q 001995 288 LRESIEGKKFFLVLDDVWT-EEPQNWEQLLGCLRCGSKESRILVTTRNEKVAIA 340 (985)
Q Consensus 288 l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~ 340 (985)
+...+-.++-+++||.--. .|......+...+.....+..||+||.+......
T Consensus 144 la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~ 197 (301)
T TIGR03522 144 LAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEA 197 (301)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHH
Confidence 4455667888999998743 2233333444444432335679999998775443
No 422
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=93.68 E-value=0.15 Score=56.34 Aligned_cols=88 Identities=18% Similarity=0.210 Sum_probs=49.3
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccC---CceEEEEe-
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHF---NEKIWVCV- 254 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f---~~~~wv~~- 254 (985)
.++|.++.++.+.-.+...- ....... .......++-|.++|++|+|||++|+.++. .....| +..-+...
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~--~r~~~~~-~~~~e~~p~~ILLiGppG~GKT~lAraLA~--~l~~~fi~vdat~~~e~g 87 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRY--RRSQLNE-ELKDEVTPKNILMIGPTGVGKTEIARRLAK--LANAPFIKVEATKFTEVG 87 (441)
T ss_pred hccCHHHHHHHHHHHHHhhh--hhhcccc-ccccccCCceEEEECCCCCCHHHHHHHHHH--HhCCeEEEeecceeecCC
Confidence 58899998888877666420 0000000 000012346789999999999999999987 333333 22212211
Q ss_pred CCCCCHHHHHHHHHHHh
Q 001995 255 SEPFDDIRIAKAILESL 271 (985)
Q Consensus 255 ~~~~~~~~~~~~i~~~l 271 (985)
....+.+.+++.+....
T Consensus 88 ~vG~dvE~i~r~l~e~A 104 (441)
T TIGR00390 88 YVGRDVESMVRDLTDAA 104 (441)
T ss_pred cccCCHHHHHHHHHHHH
Confidence 12235566666665543
No 423
>PRK04040 adenylate kinase; Provisional
Probab=93.67 E-value=0.048 Score=54.41 Aligned_cols=22 Identities=32% Similarity=0.658 Sum_probs=20.7
Q ss_pred EEEEEEccCCchHHHHHHHHhc
Q 001995 217 TIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
.+|+|+|++|+||||+++.+..
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~ 24 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALE 24 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 424
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=93.67 E-value=0.42 Score=49.43 Aligned_cols=23 Identities=35% Similarity=0.517 Sum_probs=21.1
Q ss_pred EEEEEEccCCchHHHHHHHHhcc
Q 001995 217 TIISITGMGGIGKTTLAKLIFND 239 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~~ 239 (985)
.+++|+|..|+|||||++.++..
T Consensus 49 e~~~i~G~nGsGKSTLl~~l~G~ 71 (224)
T cd03220 49 ERIGLIGRNGAGKSTLLRLLAGI 71 (224)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999873
No 425
>PRK12678 transcription termination factor Rho; Provisional
Probab=93.67 E-value=0.078 Score=60.35 Aligned_cols=85 Identities=22% Similarity=0.258 Sum_probs=47.8
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhc-cCCceE-EEEeCCCCCHHHHHHHHHHHhcC----CCCCCCCH-----HH
Q 001995 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRN-HFNEKI-WVCVSEPFDDIRIAKAILESLKG----SATNAVES-----ET 283 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-~f~~~~-wv~~~~~~~~~~~~~~i~~~l~~----~~~~~~~~-----~~ 283 (985)
.-....|+|.+|+|||||++.+++ .+.. +-++.+ .+-+.+..... .++-+.+.+ ...+.... ..
T Consensus 415 kGQR~LIvgpp~aGKTtLL~~IAn--~i~~n~~~~~~ivvLIgERpeEV---tdm~rsVkgeVVasT~D~p~~~~~~~a~ 489 (672)
T PRK12678 415 KGQRGLIVSPPKAGKTTILQNIAN--AITTNNPECHLMVVLVDERPEEV---TDMQRSVKGEVIASTFDRPPSDHTTVAE 489 (672)
T ss_pred cCCEeEEeCCCCCCHHHHHHHHHH--HHhhcCCCeEEEEEEEeCchhhH---HHHHHhccceEEEECCCCCHHHHHHHHH
Confidence 456789999999999999999998 3322 223333 33344433222 222333311 11111111 12
Q ss_pred HHHHHHHHh--cCceEEEEecCC
Q 001995 284 VLKQLRESI--EGKKFFLVLDDV 304 (985)
Q Consensus 284 ~~~~l~~~l--~~k~~LlVlDdv 304 (985)
+.-.+.+++ .++.+||++|++
T Consensus 490 ~ai~~Ae~fre~G~dVlillDSl 512 (672)
T PRK12678 490 LAIERAKRLVELGKDVVVLLDSI 512 (672)
T ss_pred HHHHHHHHHHHcCCCEEEEEeCc
Confidence 222344555 589999999999
No 426
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=93.65 E-value=0.39 Score=50.61 Aligned_cols=24 Identities=29% Similarity=0.592 Sum_probs=21.5
Q ss_pred CEEEEEEccCCchHHHHHHHHhcc
Q 001995 216 PTIISITGMGGIGKTTLAKLIFND 239 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~ 239 (985)
-.+++|+|..|.|||||++.++.-
T Consensus 30 Ge~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 30 GKILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999863
No 427
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=93.63 E-value=0.035 Score=49.70 Aligned_cols=21 Identities=57% Similarity=0.676 Sum_probs=18.9
Q ss_pred EEEEccCCchHHHHHHHHhcc
Q 001995 219 ISITGMGGIGKTTLAKLIFND 239 (985)
Q Consensus 219 v~I~G~gGiGKTtLa~~v~~~ 239 (985)
|.|+|.+|+|||++|+.++.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 579999999999999998874
No 428
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=93.63 E-value=0.36 Score=56.28 Aligned_cols=134 Identities=17% Similarity=0.162 Sum_probs=71.9
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 258 (985)
.++|....+.++...+.... .....+.|.|..|.||+++|+.+..... ......+-+++..-
T Consensus 135 ~lig~s~~~~~v~~~i~~~a---------------~~~~~vli~Ge~GtGK~~~A~~ih~~~~--~~~~~~~~~~c~~~- 196 (463)
T TIGR01818 135 ELIGEAPAMQEVFRAIGRLS---------------RSDITVLINGESGTGKELVARALHRHSP--RANGPFIALNMAAI- 196 (463)
T ss_pred ceeecCHHHHHHHHHHHHHh---------------CcCCeEEEECCCCCCHHHHHHHHHHhCC--CCCCCeEEEeCCCC-
Confidence 57888888888877776432 2234678999999999999999987321 11112233343332
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCCCcccHHHHHhhhcCCC-----------CCcE
Q 001995 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTEEPQNWEQLLGCLRCGS-----------KESR 327 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ 327 (985)
..+.+...+ ++... ...... .............-.|+||++..........+...+..+. ...|
T Consensus 197 -~~~~~~~~l--fg~~~-~~~~~~-~~~~~g~~~~a~~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~r 271 (463)
T TIGR01818 197 -PKDLIESEL--FGHEK-GAFTGA-NTRRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVR 271 (463)
T ss_pred -CHHHHHHHh--cCCCC-CCCCCc-ccCCCCcEEECCCCeEEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeE
Confidence 223333322 11110 000000 0000000011223448899998776666777777665431 2458
Q ss_pred EEEEcCch
Q 001995 328 ILVTTRNE 335 (985)
Q Consensus 328 ilvTtR~~ 335 (985)
||.||...
T Consensus 272 ii~~~~~~ 279 (463)
T TIGR01818 272 IVAATHQN 279 (463)
T ss_pred EEEeCCCC
Confidence 88888644
No 429
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=93.62 E-value=0.37 Score=50.52 Aligned_cols=55 Identities=16% Similarity=0.212 Sum_probs=38.3
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhc
Q 001995 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLK 272 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 272 (985)
.-.++.|.|.+|+|||++|.+++.+.- ..+=..++|++... +..++...++....
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~-~~~g~~vly~s~E~--~~~~~~~r~~~~~~ 66 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIA-KKQGKPVLFFSLEM--SKEQLLQRLLASES 66 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHH-HhCCCceEEEeCCC--CHHHHHHHHHHHhc
Confidence 446999999999999999999877422 22123567776654 56677777765543
No 430
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.61 E-value=0.38 Score=52.31 Aligned_cols=26 Identities=31% Similarity=0.612 Sum_probs=23.0
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcc
Q 001995 214 QRPTIISITGMGGIGKTTLAKLIFND 239 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 239 (985)
....+++++|++|+||||++..++..
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~ 137 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHK 137 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 35689999999999999999999873
No 431
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=93.59 E-value=0.28 Score=49.64 Aligned_cols=24 Identities=38% Similarity=0.562 Sum_probs=21.6
Q ss_pred CEEEEEEccCCchHHHHHHHHhcc
Q 001995 216 PTIISITGMGGIGKTTLAKLIFND 239 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~ 239 (985)
-.+++|+|..|.|||||.+.+...
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 26 GEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 369999999999999999998874
No 432
>PRK00625 shikimate kinase; Provisional
Probab=93.59 E-value=0.045 Score=53.69 Aligned_cols=21 Identities=29% Similarity=0.493 Sum_probs=19.4
Q ss_pred EEEEEccCCchHHHHHHHHhc
Q 001995 218 IISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 218 vv~I~G~gGiGKTtLa~~v~~ 238 (985)
.|.|+||+|+||||+++.+.+
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999987
No 433
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.58 E-value=0.37 Score=56.24 Aligned_cols=103 Identities=17% Similarity=0.243 Sum_probs=64.0
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 258 (985)
++-|-++-+.+|.+-+.-+-.. . ....+. -.+.+-|.++|++|.|||-||++|+.+ |. .-|++|-.+
T Consensus 673 DVGGLeevK~eIldTIqlPL~h-p-eLfssg---lrkRSGILLYGPPGTGKTLlAKAVATE------cs-L~FlSVKGP- 739 (953)
T KOG0736|consen 673 DVGGLEEVKTEILDTIQLPLKH-P-ELFSSG---LRKRSGILLYGPPGTGKTLLAKAVATE------CS-LNFLSVKGP- 739 (953)
T ss_pred cccCHHHHHHHHHHHhcCcccC-h-hhhhcc---ccccceeEEECCCCCchHHHHHHHHhh------ce-eeEEeecCH-
Confidence 6778999999988766532100 0 000000 133567899999999999999999983 21 234555432
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCC
Q 001995 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWT 306 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 306 (985)
+++... ....++.+.+.+.+.-..++++|.||.+++
T Consensus 740 ---ELLNMY---------VGqSE~NVR~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 740 ---ELLNMY---------VGQSEENVREVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred ---HHHHHH---------hcchHHHHHHHHHHhhccCCeEEEeccccc
Confidence 222221 123345566666666667999999999865
No 434
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=93.54 E-value=0.28 Score=49.33 Aligned_cols=41 Identities=24% Similarity=0.374 Sum_probs=27.9
Q ss_pred EEEEEEccCCchHHHHHHHHhcchhhhccC--------CceEEEEeCCC
Q 001995 217 TIISITGMGGIGKTTLAKLIFNDNEVRNHF--------NEKIWVCVSEP 257 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f--------~~~~wv~~~~~ 257 (985)
.++.|+|.+|+||||++..++...-....| ..++|++....
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 489999999999999999987743222222 24778877654
No 435
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=93.53 E-value=0.34 Score=58.28 Aligned_cols=85 Identities=21% Similarity=0.207 Sum_probs=57.3
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCC-----CCCCCHHHHHHHH
Q 001995 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSA-----TNAVESETVLKQL 288 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l 288 (985)
+.-+++-|+|.+|+||||||.+++.... ..=..++|++..+.++. ..+++++.+. ......++....+
T Consensus 58 p~GsiteI~G~~GsGKTtLal~~~~~a~--~~G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~~~~~E~~l~~i 130 (790)
T PRK09519 58 PRGRVIEIYGPESSGKTTVALHAVANAQ--AAGGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQPDTGEQALEIA 130 (790)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEECCccchhH-----HHHHHcCCChhHeEEecCCCHHHHHHHH
Confidence 4568999999999999999988766322 22245789988777764 2566665432 1223445555555
Q ss_pred HHHhc-CceEEEEecCCC
Q 001995 289 RESIE-GKKFFLVLDDVW 305 (985)
Q Consensus 289 ~~~l~-~k~~LlVlDdv~ 305 (985)
...++ ++.-|||+|.+-
T Consensus 131 ~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 131 DMLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHHhhcCCCeEEEEcchh
Confidence 55554 467789999984
No 436
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=93.52 E-value=0.9 Score=44.04 Aligned_cols=22 Identities=41% Similarity=0.652 Sum_probs=20.1
Q ss_pred EEEEEEccCCchHHHHHHHHhc
Q 001995 217 TIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
..+.|.|+.|+|||||.+.++-
T Consensus 29 e~~~i~G~NG~GKTtLLRilaG 50 (209)
T COG4133 29 EALQITGPNGAGKTTLLRILAG 50 (209)
T ss_pred CEEEEECCCCCcHHHHHHHHHc
Confidence 4899999999999999999875
No 437
>PTZ00185 ATPase alpha subunit; Provisional
Probab=93.52 E-value=0.26 Score=55.65 Aligned_cols=92 Identities=20% Similarity=0.220 Sum_probs=54.8
Q ss_pred CCCEEEEEEccCCchHHHHH-HHHhcchhhh-----ccCCceEEEEeCCCCCHHHHHHHHHHHhc-CC-------CCCCC
Q 001995 214 QRPTIISITGMGGIGKTTLA-KLIFNDNEVR-----NHFNEKIWVCVSEPFDDIRIAKAILESLK-GS-------ATNAV 279 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa-~~v~~~~~~~-----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~-~~-------~~~~~ 279 (985)
++-+.++|.|..|+|||+|| ..+.+...+. .+-..++++-+++..+...-+.+.+++-+ .. ..+..
T Consensus 187 GRGQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep 266 (574)
T PTZ00185 187 GRGQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEP 266 (574)
T ss_pred cCCCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCC
Confidence 34568899999999999997 5566643221 23345778888877655444445454443 11 01111
Q ss_pred CHHH-----HHHHHHHHh--cCceEEEEecCCC
Q 001995 280 ESET-----VLKQLRESI--EGKKFFLVLDDVW 305 (985)
Q Consensus 280 ~~~~-----~~~~l~~~l--~~k~~LlVlDdv~ 305 (985)
...+ ....+.+++ +++.+|+|+||+.
T Consensus 267 ~~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLT 299 (574)
T PTZ00185 267 AGLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLS 299 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCch
Confidence 1111 122344444 5899999999983
No 438
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=93.52 E-value=0.94 Score=46.14 Aligned_cols=23 Identities=39% Similarity=0.551 Sum_probs=20.8
Q ss_pred CEEEEEEccCCchHHHHHHHHhc
Q 001995 216 PTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
-.+++|.|..|.|||||++.+..
T Consensus 34 G~~~~i~G~nGsGKSTLl~~l~G 56 (207)
T cd03369 34 GEKIGIVGRTGAGKSTLILALFR 56 (207)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999975
No 439
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=93.48 E-value=0.047 Score=53.81 Aligned_cols=24 Identities=42% Similarity=0.614 Sum_probs=21.9
Q ss_pred CEEEEEEccCCchHHHHHHHHhcc
Q 001995 216 PTIISITGMGGIGKTTLAKLIFND 239 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~ 239 (985)
..+|+|-||-|+||||||+.++++
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~ 27 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEH 27 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHH
Confidence 469999999999999999999983
No 440
>PTZ00088 adenylate kinase 1; Provisional
Probab=93.45 E-value=0.07 Score=54.94 Aligned_cols=21 Identities=33% Similarity=0.570 Sum_probs=19.5
Q ss_pred EEEEEccCCchHHHHHHHHhc
Q 001995 218 IISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 218 vv~I~G~gGiGKTtLa~~v~~ 238 (985)
.|.|+|++|+||||+|+.++.
T Consensus 8 rIvl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999987
No 441
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=93.44 E-value=0.65 Score=47.87 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=20.8
Q ss_pred CEEEEEEccCCchHHHHHHHHhc
Q 001995 216 PTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
-.+++|+|..|.|||||++.++.
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~l~G 52 (221)
T cd03244 30 GEKVGIVGRTGSGKSSLLLALFR 52 (221)
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 35899999999999999999875
No 442
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=93.44 E-value=3.4 Score=41.63 Aligned_cols=162 Identities=15% Similarity=0.209 Sum_probs=84.2
Q ss_pred Cceec-chhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCC
Q 001995 178 YEIRG-RNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSE 256 (985)
Q Consensus 178 ~~~vG-r~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 256 (985)
++.+| -+..+++|.+.+.-+.. ++..... -+-.+++-|.++|++|.|||-||+.|+++ .++.|+.+|.
T Consensus 146 YeMiGgLd~QIkeIkEVIeLPvK-HPELF~a---LGIaQPKGvlLygppgtGktLlaraVahh-------t~c~firvsg 214 (404)
T KOG0728|consen 146 YEMIGGLDKQIKEIKEVIELPVK-HPELFEA---LGIAQPKGVLLYGPPGTGKTLLARAVAHH-------TDCTFIRVSG 214 (404)
T ss_pred HHHhccHHHHHHHHHHHHhcccc-CHHHHHh---cCCCCCcceEEecCCCCchhHHHHHHHhh-------cceEEEEech
Confidence 34555 57777777666543220 0000000 01346778999999999999999999973 3455677765
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh----cCceEEEEecCCCCC-----------CcccHHHHHhhh--
Q 001995 257 PFDDIRIAKAILESLKGSATNAVESETVLKQLRESI----EGKKFFLVLDDVWTE-----------EPQNWEQLLGCL-- 319 (985)
Q Consensus 257 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l----~~k~~LlVlDdv~~~-----------~~~~~~~l~~~l-- 319 (985)
. ++.+. .-+. -...+++.+ ..-+.++++|.+++. +.+.-...+..+
T Consensus 215 s----elvqk----~ige---------gsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnq 277 (404)
T KOG0728|consen 215 S----ELVQK----YIGE---------GSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQ 277 (404)
T ss_pred H----HHHHH----Hhhh---------hHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHh
Confidence 2 12111 1111 111222221 345788888887541 111122222222
Q ss_pred -c--CCCCCcEEEEEcCchhhHHhh--cCc-ccccccCCCCChHHHHHHHHHHh
Q 001995 320 -R--CGSKESRILVTTRNEKVAIAI--GTT-KFNIIPIELLSDEDCWSIFSQLA 367 (985)
Q Consensus 320 -~--~~~~gs~ilvTtR~~~v~~~~--~~~-~~~~~~l~~L~~~e~~~Lf~~~~ 367 (985)
. ...+.-+||..|..-++.... ... -...++..+-+++.-.++++-+.
T Consensus 278 ldgfeatknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 278 LDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred ccccccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 2 124566788877655443221 111 11456777777776666766543
No 443
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=93.41 E-value=0.086 Score=49.68 Aligned_cols=39 Identities=21% Similarity=0.355 Sum_probs=27.2
Q ss_pred EEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCC
Q 001995 217 TIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSE 256 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 256 (985)
++|.|+|..|+|||||++.+.+.. .+..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l-~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINEL-KRRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH-HHTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH-hHcCCceEEEEEccC
Confidence 489999999999999999999842 234555555666544
No 444
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=93.40 E-value=0.28 Score=45.26 Aligned_cols=72 Identities=19% Similarity=0.271 Sum_probs=41.2
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcC
Q 001995 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEG 294 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 294 (985)
..+-|.|+|-+|+||||+|..++. .. ..-|++++.-.....++...=++. .+...+.+.+.+.|...+.+
T Consensus 6 ~~PNILvtGTPG~GKstl~~~lae--~~-----~~~~i~isd~vkEn~l~~gyDE~y---~c~i~DEdkv~D~Le~~m~~ 75 (176)
T KOG3347|consen 6 ERPNILVTGTPGTGKSTLAERLAE--KT-----GLEYIEISDLVKENNLYEGYDEEY---KCHILDEDKVLDELEPLMIE 75 (176)
T ss_pred cCCCEEEeCCCCCCchhHHHHHHH--Hh-----CCceEehhhHHhhhcchhcccccc---cCccccHHHHHHHHHHHHhc
Confidence 345689999999999999999985 21 123566654222222211111110 23345666777777766654
Q ss_pred ce
Q 001995 295 KK 296 (985)
Q Consensus 295 k~ 296 (985)
.-
T Consensus 76 Gg 77 (176)
T KOG3347|consen 76 GG 77 (176)
T ss_pred CC
Confidence 33
No 445
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=93.39 E-value=0.69 Score=51.88 Aligned_cols=57 Identities=18% Similarity=0.170 Sum_probs=35.2
Q ss_pred ceecchhhHHHHHHHHhc----CCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhc
Q 001995 179 EIRGRNHLQNKVASLLMS----GSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
.++|.++.++.+...+.. ....... .....-......|.++|++|+|||++|+.++.
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~---~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~ 138 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNK---KSDNGVELSKSNILLIGPTGSGKTLLAQTLAR 138 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhcccccc---ccccccccCCceEEEECCCCcCHHHHHHHHHH
Confidence 589999998888765521 0000000 00000001235799999999999999999986
No 446
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=93.39 E-value=0.069 Score=50.21 Aligned_cols=23 Identities=39% Similarity=0.733 Sum_probs=20.9
Q ss_pred CEEEEEEccCCchHHHHHHHHhc
Q 001995 216 PTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
..+|.|+|.+|+||||+.+.+..
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~ 26 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALK 26 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHH
Confidence 68999999999999999987776
No 447
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=93.38 E-value=0.35 Score=54.84 Aligned_cols=89 Identities=18% Similarity=0.213 Sum_probs=54.8
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC-CHHHHHHHHHHHhcCC-------CCCCCCHH----
Q 001995 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF-DDIRIAKAILESLKGS-------ATNAVESE---- 282 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~---- 282 (985)
+-+.++|.|.+|+|||||+.++++.... .+-+.++++-+.+.. .+.++...+...-... ..+.....
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~~-~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a 220 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNISK-QHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRV 220 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHh-hCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHH
Confidence 4468999999999999999998874322 245667777666543 3445555554432111 11111111
Q ss_pred -HHHHHHHHHh---cCceEEEEecCC
Q 001995 283 -TVLKQLRESI---EGKKFFLVLDDV 304 (985)
Q Consensus 283 -~~~~~l~~~l---~~k~~LlVlDdv 304 (985)
.....+.+++ +++.+||++||+
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLl~~Dsl 246 (461)
T PRK12597 221 VLTGLTIAEYLRDEEKEDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHHHHhcCCceEEEeccc
Confidence 1233355665 389999999999
No 448
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=93.35 E-value=0.17 Score=55.92 Aligned_cols=112 Identities=13% Similarity=0.213 Sum_probs=60.1
Q ss_pred CEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCc
Q 001995 216 PTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEGK 295 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 295 (985)
...+.|.|+.|+||||+.+.+.+ .+.......++.- .++... ........+... ....+.......++..|...
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~--~i~~~~~~~i~ti-Edp~E~--~~~~~~~~i~q~-evg~~~~~~~~~l~~~lr~~ 195 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMID--YINKNAAGHIITI-EDPIEY--VHRNKRSLINQR-EVGLDTLSFANALRAALRED 195 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH--hhCcCCCCEEEEE-cCChhh--hccCccceEEcc-ccCCCCcCHHHHHHHhhccC
Confidence 36899999999999999999886 3443444555442 222111 000000000000 01111223455677778889
Q ss_pred eEEEEecCCCCCCcccHHHHHhhhcCCCCCcEEEEEcCchhhH
Q 001995 296 KFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRILVTTRNEKVA 338 (985)
Q Consensus 296 ~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~ 338 (985)
+=.|++|.+.+ .+.+...... ...|..|+.|.-.....
T Consensus 196 pd~i~vgEird--~~~~~~~l~a---a~tGh~v~~T~Ha~~~~ 233 (343)
T TIGR01420 196 PDVILIGEMRD--LETVELALTA---AETGHLVFGTLHTNSAA 233 (343)
T ss_pred CCEEEEeCCCC--HHHHHHHHHH---HHcCCcEEEEEcCCCHH
Confidence 99999999953 3444432222 23454566665544443
No 449
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=93.34 E-value=0.78 Score=47.78 Aligned_cols=115 Identities=18% Similarity=0.228 Sum_probs=64.8
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhcc-CCceEEEEeCCC
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNH-FNEKIWVCVSEP 257 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-f~~~~wv~~~~~ 257 (985)
.++|-.-..+.|+..+..-- ......++-+++.+|..|.||.-.++.++++-...+. =+.+-...+..+
T Consensus 83 ~lfGQHla~~~Vv~alk~~~----------~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~h 152 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHW----------ANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLH 152 (344)
T ss_pred HhhchHHHHHHHHHHHHHHh----------cCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhcc
Confidence 56777666666766665322 1111356789999999999999999999885221111 011110111111
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCCH----HHHHHHHHHHh-cCceEEEEecCCCCCCcccHHHHHhhhc
Q 001995 258 FDDIRIAKAILESLKGSATNAVES----ETVLKQLRESI-EGKKFFLVLDDVWTEEPQNWEQLLGCLR 320 (985)
Q Consensus 258 ~~~~~~~~~i~~~l~~~~~~~~~~----~~~~~~l~~~l-~~k~~LlVlDdv~~~~~~~~~~l~~~l~ 320 (985)
| +..... +++...+++.+ .-+|-|+|+|+++.....-.+.+.+++.
T Consensus 153 F-----------------P~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~gLld~lkpfLd 203 (344)
T KOG2170|consen 153 F-----------------PHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPPGLLDVLKPFLD 203 (344)
T ss_pred C-----------------CChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcCHhHHHHHhhhhc
Confidence 1 111112 23333344333 2479999999997655555666666665
No 450
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=93.33 E-value=0.5 Score=54.17 Aligned_cols=41 Identities=27% Similarity=0.321 Sum_probs=30.1
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCC
Q 001995 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSE 256 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 256 (985)
..-.++.|.|.+|+|||||+.+++.. ....-..++|++..+
T Consensus 92 ~~GsvilI~G~pGsGKTTL~lq~a~~--~a~~g~kvlYvs~EE 132 (454)
T TIGR00416 92 VPGSLILIGGDPGIGKSTLLLQVACQ--LAKNQMKVLYVSGEE 132 (454)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHH--HHhcCCcEEEEECcC
Confidence 35579999999999999999999763 222223577887644
No 451
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=93.31 E-value=0.34 Score=54.47 Aligned_cols=86 Identities=20% Similarity=0.284 Sum_probs=50.0
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCC-CCHHHHHHHHHHHhcCC-------CCCCCCHHH---
Q 001995 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEP-FDDIRIAKAILESLKGS-------ATNAVESET--- 283 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~-------~~~~~~~~~--- 283 (985)
.-..++|+|..|+|||||++.+.+.. +.+..+++.+.+. ..+.+.+.+....=... ..+......
T Consensus 154 ~GqrigI~G~sG~GKSTLL~~I~~~~----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a 229 (433)
T PRK07594 154 EGQRVGIFSAPGVGKSTLLAMLCNAP----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRA 229 (433)
T ss_pred CCCEEEEECCCCCCccHHHHHhcCCC----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHH
Confidence 44689999999999999999998732 2334555555443 33445555543211000 111111111
Q ss_pred --HHHHHHHHh--cCceEEEEecCC
Q 001995 284 --VLKQLRESI--EGKKFFLVLDDV 304 (985)
Q Consensus 284 --~~~~l~~~l--~~k~~LlVlDdv 304 (985)
..-.+.+++ +++++||++||+
T Consensus 230 ~~~a~tiAEyfrd~G~~VLl~~Dsl 254 (433)
T PRK07594 230 LFVATTIAEFFRDNGKRVVLLADSL 254 (433)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCH
Confidence 122344555 589999999999
No 452
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=93.30 E-value=0.35 Score=54.62 Aligned_cols=89 Identities=21% Similarity=0.269 Sum_probs=53.7
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC-CHHHHHHHHHHHhcCC-------CCCCCCHHH---
Q 001995 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF-DDIRIAKAILESLKGS-------ATNAVESET--- 283 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~--- 283 (985)
.-+.++|.|..|+|||||+..++...... +=..++++-+.+.. .+.+++..+...-... ..+......
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~~~-~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a 221 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIAKE-HGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRV 221 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhc-CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 45689999999999999999887642211 11346666666544 3455666665432111 111111111
Q ss_pred --HHHHHHHHh---cCceEEEEecCC
Q 001995 284 --VLKQLRESI---EGKKFFLVLDDV 304 (985)
Q Consensus 284 --~~~~l~~~l---~~k~~LlVlDdv 304 (985)
..-.+.+++ +++.+||++||+
T Consensus 222 ~~~a~tiAEyfrd~~G~~VLll~Dsl 247 (463)
T PRK09280 222 ALTGLTMAEYFRDVEGQDVLLFIDNI 247 (463)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecch
Confidence 223355665 689999999999
No 453
>PRK11823 DNA repair protein RadA; Provisional
Probab=93.29 E-value=0.38 Score=55.09 Aligned_cols=82 Identities=23% Similarity=0.289 Sum_probs=47.3
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCC-----CCCCCHHHHHHHHH
Q 001995 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSA-----TNAVESETVLKQLR 289 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~ 289 (985)
.-.++.|.|.+|+|||||+.+++.. ....-..++|++..+. ..++... ++.++... ....+.+++...+.
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~--~a~~g~~vlYvs~Ees--~~qi~~r-a~rlg~~~~~l~~~~e~~l~~i~~~i~ 153 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAAR--LAAAGGKVLYVSGEES--ASQIKLR-AERLGLPSDNLYLLAETNLEAILATIE 153 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEcccc--HHHHHHH-HHHcCCChhcEEEeCCCCHHHHHHHHH
Confidence 4579999999999999999999874 2222235778876543 3333222 44443211 01123343333332
Q ss_pred HHhcCceEEEEecCC
Q 001995 290 ESIEGKKFFLVLDDV 304 (985)
Q Consensus 290 ~~l~~k~~LlVlDdv 304 (985)
+.+.-++|+|.+
T Consensus 154 ---~~~~~lVVIDSI 165 (446)
T PRK11823 154 ---EEKPDLVVIDSI 165 (446)
T ss_pred ---hhCCCEEEEech
Confidence 235557788877
No 454
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=93.29 E-value=0.047 Score=55.29 Aligned_cols=21 Identities=52% Similarity=0.708 Sum_probs=19.5
Q ss_pred EEEEEccCCchHHHHHHHHhc
Q 001995 218 IISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 218 vv~I~G~gGiGKTtLa~~v~~ 238 (985)
+|+|.|..|+||||+|+.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999876
No 455
>PRK05922 type III secretion system ATPase; Validated
Probab=93.28 E-value=0.48 Score=53.25 Aligned_cols=85 Identities=14% Similarity=0.212 Sum_probs=48.4
Q ss_pred CEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCC-CCHHHHHHHHHHHhcCCC-------CCCCCHH-----
Q 001995 216 PTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEP-FDDIRIAKAILESLKGSA-------TNAVESE----- 282 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~-------~~~~~~~----- 282 (985)
-..++|+|..|+|||||.+.+.... ..+..+.+-++.. ....+.+.+......... .+.....
T Consensus 157 GqrigI~G~nG~GKSTLL~~Ia~~~----~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~ 232 (434)
T PRK05922 157 GQRIGVFSEPGSGKSSLLSTIAKGS----KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAG 232 (434)
T ss_pred CcEEEEECCCCCChHHHHHHHhccC----CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHH
Confidence 3579999999999999999998732 1233333333332 233444444443322211 1111111
Q ss_pred HHHHHHHHHh--cCceEEEEecCC
Q 001995 283 TVLKQLRESI--EGKKFFLVLDDV 304 (985)
Q Consensus 283 ~~~~~l~~~l--~~k~~LlVlDdv 304 (985)
...-.+.+++ +++.+||++||+
T Consensus 233 ~~a~tiAEyfrd~G~~VLl~~Dsl 256 (434)
T PRK05922 233 RAAMTIAEYFRDQGHRVLFIMDSL 256 (434)
T ss_pred HHHHHHHHHHHHcCCCEEEeccch
Confidence 1223345555 589999999999
No 456
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=93.27 E-value=0.16 Score=53.01 Aligned_cols=86 Identities=21% Similarity=0.215 Sum_probs=48.8
Q ss_pred CCEEEEEEccCCchHHHHH-HHHhcchhhhccCCce-EEEEeCCCC-CHHHHHHHHHHHhcCC-------CCCCCCHHH-
Q 001995 215 RPTIISITGMGGIGKTTLA-KLIFNDNEVRNHFNEK-IWVCVSEPF-DDIRIAKAILESLKGS-------ATNAVESET- 283 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~f~~~-~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~- 283 (985)
+-+.++|.|..|+|||+|| ..+.+. . +-+.+ +++-+.+.. ...++...+...-... ..+......
T Consensus 68 rGQr~~Ifg~~g~GKt~L~l~~i~~~--~--~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~ 143 (274)
T cd01132 68 RGQRELIIGDRQTGKTAIAIDTIINQ--K--GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQY 143 (274)
T ss_pred cCCEEEeeCCCCCCccHHHHHHHHHh--c--CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHH
Confidence 4468999999999999996 556542 1 22333 556666554 3445555555432111 111111111
Q ss_pred ----HHHHHHHHh--cCceEEEEecCC
Q 001995 284 ----VLKQLRESI--EGKKFFLVLDDV 304 (985)
Q Consensus 284 ----~~~~l~~~l--~~k~~LlVlDdv 304 (985)
..-.+.+++ +++.+|||+||+
T Consensus 144 ~a~~~a~aiAE~fr~~G~~Vlvl~Dsl 170 (274)
T cd01132 144 LAPYTGCAMGEYFMDNGKHALIIYDDL 170 (274)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEcCh
Confidence 122333444 589999999999
No 457
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=93.27 E-value=0.37 Score=54.20 Aligned_cols=86 Identities=15% Similarity=0.182 Sum_probs=50.6
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCC-HHHHHHHHHHHhcCC-------CCCCCCHHH---
Q 001995 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFD-DIRIAKAILESLKGS-------ATNAVESET--- 283 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~-------~~~~~~~~~--- 283 (985)
.-..++|+|..|+|||||++.+++... .+.++++-+.+... +.++....+..-+.. ..+......
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a 232 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQA 232 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHH
Confidence 446899999999999999999987321 23444555555443 334444444432211 111111111
Q ss_pred --HHHHHHHHh--cCceEEEEecCC
Q 001995 284 --VLKQLRESI--EGKKFFLVLDDV 304 (985)
Q Consensus 284 --~~~~l~~~l--~~k~~LlVlDdv 304 (985)
..-.+.+++ +++.+|+++||+
T Consensus 233 ~~~a~tiAEyfrd~G~~Vll~~Dsl 257 (442)
T PRK08927 233 AYLTLAIAEYFRDQGKDVLCLMDSV 257 (442)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCc
Confidence 222344555 589999999999
No 458
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=93.22 E-value=0.45 Score=51.47 Aligned_cols=86 Identities=15% Similarity=0.191 Sum_probs=49.2
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeC-CCCCHHHHHHHHHHHhcCC-------CCCCCCHH----
Q 001995 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVS-EPFDDIRIAKAILESLKGS-------ATNAVESE---- 282 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~l~~~-------~~~~~~~~---- 282 (985)
.-..++|+|..|.|||||.+.+..... -+..+..-+. ...+..++.......-... ..+.....
T Consensus 68 ~Gqri~I~G~sG~GKTtLl~~Ia~~~~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~ 143 (326)
T cd01136 68 KGQRLGIFAGSGVGKSTLLGMIARGTT----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKA 143 (326)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHH
Confidence 345789999999999999999987321 1233333333 2334555555554432211 11111111
Q ss_pred -HHHHHHHHHh--cCceEEEEecCC
Q 001995 283 -TVLKQLRESI--EGKKFFLVLDDV 304 (985)
Q Consensus 283 -~~~~~l~~~l--~~k~~LlVlDdv 304 (985)
...-.+.+++ +++.+||++||+
T Consensus 144 ~~~a~~~AEyfr~~g~~Vll~~Dsl 168 (326)
T cd01136 144 AYTATAIAEYFRDQGKDVLLLMDSL 168 (326)
T ss_pred HHHHHHHHHHHHHcCCCeEEEeccc
Confidence 1222234444 589999999998
No 459
>PRK00131 aroK shikimate kinase; Reviewed
Probab=93.22 E-value=0.061 Score=53.12 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=21.2
Q ss_pred CEEEEEEccCCchHHHHHHHHhc
Q 001995 216 PTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
...|.|+|++|+||||+|+.++.
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~ 26 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAK 26 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHH
Confidence 35899999999999999999987
No 460
>PRK08149 ATP synthase SpaL; Validated
Probab=93.18 E-value=0.24 Score=55.52 Aligned_cols=86 Identities=16% Similarity=0.257 Sum_probs=50.6
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCC-CCCHHHHHHHHHHHhcCC-------CCCCCCHH----
Q 001995 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSE-PFDDIRIAKAILESLKGS-------ATNAVESE---- 282 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~-------~~~~~~~~---- 282 (985)
+-..++|+|..|+|||||++.++... .-+.++...+.. ..+..++........... ..+.....
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~----~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a 225 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHS----EADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNA 225 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCC----CCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhH
Confidence 44689999999999999999998732 112333333333 334555656665543221 11111111
Q ss_pred -HHHHHHHHHh--cCceEEEEecCC
Q 001995 283 -TVLKQLRESI--EGKKFFLVLDDV 304 (985)
Q Consensus 283 -~~~~~l~~~l--~~k~~LlVlDdv 304 (985)
.....+.+++ +++.+||++||+
T Consensus 226 ~~~a~tiAE~fr~~G~~Vll~~Dsl 250 (428)
T PRK08149 226 ALVATTVAEYFRDQGKRVVLFIDSM 250 (428)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccch
Confidence 1233344555 589999999999
No 461
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.14 E-value=0.062 Score=53.39 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=20.2
Q ss_pred EEEEEEccCCchHHHHHHHHhc
Q 001995 217 TIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
.+++|+|+.|+||||+++.+..
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~ 23 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARA 23 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999877
No 462
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=93.13 E-value=0.28 Score=58.13 Aligned_cols=115 Identities=17% Similarity=0.209 Sum_probs=62.6
Q ss_pred EEEEEEccCCchHHHHHHHHhcchhhhccC---CceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCC---CHHHHHHHHHH
Q 001995 217 TIISITGMGGIGKTTLAKLIFNDNEVRNHF---NEKIWVCVSEPFDDIRIAKAILESLKGSATNAV---ESETVLKQLRE 290 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f---~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~---~~~~~~~~l~~ 290 (985)
++..|.|.+|.||||++..+... ..... ...+.+......-...+...+...+..-..... ....-...+.+
T Consensus 168 ~~~vItGgpGTGKTt~v~~ll~~--l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~~~~~~~~~~~a~TiHr 245 (615)
T PRK10875 168 RISVISGGPGTGKTTTVAKLLAA--LIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEEASTLHR 245 (615)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHH--HHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccchhhhhcCCCchHHHHH
Confidence 68999999999999999988763 22111 235666655544444555444433321110000 00001122333
Q ss_pred Hhc------------Cce---EEEEecCCCCCCcccHHHHHhhhcCCCCCcEEEEEcCchh
Q 001995 291 SIE------------GKK---FFLVLDDVWTEEPQNWEQLLGCLRCGSKESRILVTTRNEK 336 (985)
Q Consensus 291 ~l~------------~k~---~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~ 336 (985)
.|. +.+ =+||+|.+.-.+......+...++ .++|+|+---..+
T Consensus 246 lLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd~~lm~~ll~al~---~~~rlIlvGD~~Q 303 (615)
T PRK10875 246 LLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVDLPMMARLIDALP---PHARVIFLGDRDQ 303 (615)
T ss_pred HhCcCCCccchhhccccCCCCCeEEEChHhcccHHHHHHHHHhcc---cCCEEEEecchhh
Confidence 331 111 289999996655555555666655 4678887655444
No 463
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=93.12 E-value=0.2 Score=54.33 Aligned_cols=82 Identities=23% Similarity=0.288 Sum_probs=51.9
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCC-----CCCCHHHHHHHHH
Q 001995 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSAT-----NAVESETVLKQLR 289 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 289 (985)
.-++|.|-|-+|||||||..+++. +....- .+++|+-.+ +..++ +--+..++.... ...+.+.+...+.
T Consensus 92 ~Gs~iLIgGdPGIGKSTLLLQva~--~lA~~~-~vLYVsGEE--S~~Qi-klRA~RL~~~~~~l~l~aEt~~e~I~~~l~ 165 (456)
T COG1066 92 PGSVILIGGDPGIGKSTLLLQVAA--RLAKRG-KVLYVSGEE--SLQQI-KLRADRLGLPTNNLYLLAETNLEDIIAELE 165 (456)
T ss_pred cccEEEEccCCCCCHHHHHHHHHH--HHHhcC-cEEEEeCCc--CHHHH-HHHHHHhCCCccceEEehhcCHHHHHHHHH
Confidence 457999999999999999999998 444333 677775433 33332 233444543221 2234455444444
Q ss_pred HHhcCceEEEEecCCC
Q 001995 290 ESIEGKKFFLVLDDVW 305 (985)
Q Consensus 290 ~~l~~k~~LlVlDdv~ 305 (985)
+ .++-++|+|-+.
T Consensus 166 ~---~~p~lvVIDSIQ 178 (456)
T COG1066 166 Q---EKPDLVVIDSIQ 178 (456)
T ss_pred h---cCCCEEEEeccc
Confidence 3 688999999983
No 464
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.11 E-value=0.053 Score=53.74 Aligned_cols=21 Identities=52% Similarity=0.756 Sum_probs=19.7
Q ss_pred EEEEEccCCchHHHHHHHHhc
Q 001995 218 IISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 218 vv~I~G~gGiGKTtLa~~v~~ 238 (985)
+|+|.|.+|+||||+|+.+..
T Consensus 1 ii~i~G~sgsGKTtla~~l~~ 21 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQR 21 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 465
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=93.10 E-value=0.052 Score=54.17 Aligned_cols=21 Identities=29% Similarity=0.384 Sum_probs=19.5
Q ss_pred EEEEEccCCchHHHHHHHHhc
Q 001995 218 IISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 218 vv~I~G~gGiGKTtLa~~v~~ 238 (985)
+|.|+|++|+||||+|+.++.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999987
No 466
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=93.09 E-value=0.25 Score=55.25 Aligned_cols=86 Identities=14% Similarity=0.178 Sum_probs=51.0
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCC-HHHHHHHHHHHhcCC-------CCCCCCHHH---
Q 001995 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFD-DIRIAKAILESLKGS-------ATNAVESET--- 283 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~-------~~~~~~~~~--- 283 (985)
.-..++|+|..|+|||||++.++... ..+.++.+-+.+... +.++...++..-... ..+......
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGT----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKG 236 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCC----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHH
Confidence 34689999999999999999998631 124455555655443 344555544332111 111111111
Q ss_pred --HHHHHHHHh--cCceEEEEecCC
Q 001995 284 --VLKQLRESI--EGKKFFLVLDDV 304 (985)
Q Consensus 284 --~~~~l~~~l--~~k~~LlVlDdv 304 (985)
..-.+.+++ +++.+||++||+
T Consensus 237 ~~~A~tiAEyfrd~G~~VLl~~Dsl 261 (444)
T PRK08972 237 CETATTIAEYFRDQGLNVLLLMDSL 261 (444)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcCh
Confidence 122344555 589999999999
No 467
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.07 E-value=1.4 Score=52.58 Aligned_cols=187 Identities=18% Similarity=0.186 Sum_probs=100.0
Q ss_pred ceecchhhH---HHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeC
Q 001995 179 EIRGRNHLQ---NKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVS 255 (985)
Q Consensus 179 ~~vGr~~~~---~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 255 (985)
++.|-++.. +++++.|..+. .. ...+..-++=|.++|++|.|||-||++++-... +-|++++
T Consensus 312 DVAG~deAK~El~E~V~fLKNP~---~Y-----~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg-------VPF~svS 376 (774)
T KOG0731|consen 312 DVAGVDEAKEELMEFVKFLKNPE---QY-----QELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG-------VPFFSVS 376 (774)
T ss_pred cccCcHHHHHHHHHHHHHhcCHH---HH-----HHcCCcCcCceEEECCCCCcHHHHHHHHhcccC-------Cceeeec
Confidence 577877554 55555555332 00 011134567799999999999999999998432 2345544
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCCC---------------cccHHHHHhhhc
Q 001995 256 EPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTEE---------------PQNWEQLLGCLR 320 (985)
Q Consensus 256 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~---------------~~~~~~l~~~l~ 320 (985)
.. +.++.+.+.. ...+.+.+...-...++++.+|+++... ...+++++.-+.
T Consensus 377 GS--------EFvE~~~g~~-----asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emD 443 (774)
T KOG0731|consen 377 GS--------EFVEMFVGVG-----ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMD 443 (774)
T ss_pred hH--------HHHHHhcccc-----hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhc
Confidence 31 1222221111 1112222222224568889988874211 112334443333
Q ss_pred CCC--CCcEEEEEcCchhhHHhh--cCc-ccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCCh
Q 001995 321 CGS--KESRILVTTRNEKVAIAI--GTT-KFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLP 395 (985)
Q Consensus 321 ~~~--~gs~ilvTtR~~~v~~~~--~~~-~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlP 395 (985)
... .+.-+|-+|...++.... ... -...+.++.-+..+-.++|..++..... ..+..++.+ |+...-|.+
T Consensus 444 gf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~----~~e~~dl~~-~a~~t~gf~ 518 (774)
T KOG0731|consen 444 GFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKL----DDEDVDLSK-LASLTPGFS 518 (774)
T ss_pred CCcCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCC----CcchhhHHH-HHhcCCCCc
Confidence 322 223334455555443221 111 1156777777888888899888765532 134455566 888888877
Q ss_pred hHH
Q 001995 396 LAV 398 (985)
Q Consensus 396 Lai 398 (985)
=|.
T Consensus 519 gad 521 (774)
T KOG0731|consen 519 GAD 521 (774)
T ss_pred HHH
Confidence 543
No 468
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=93.06 E-value=0.099 Score=50.86 Aligned_cols=25 Identities=32% Similarity=0.458 Sum_probs=22.5
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcc
Q 001995 215 RPTIISITGMGGIGKTTLAKLIFND 239 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~ 239 (985)
...+++|+|..|+|||||++.+...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 5679999999999999999999873
No 469
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=93.06 E-value=0.42 Score=47.11 Aligned_cols=120 Identities=15% Similarity=0.079 Sum_probs=66.1
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEe---CCCCCHHHHHHHHH--HHhc-CCC--CCCCCHH----
Q 001995 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCV---SEPFDDIRIAKAIL--ESLK-GSA--TNAVESE---- 282 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~---~~~~~~~~~~~~i~--~~l~-~~~--~~~~~~~---- 282 (985)
....|-|+|..|-||||.|..+.- +..++=..+..+-+ .........+..+- .... +.. ....+.+
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~--ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~ 98 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMAL--RAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIA 98 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHH--HHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHH
Confidence 346899999999999999988776 33222222333332 22234444444320 0000 110 0111111
Q ss_pred ---HHHHHHHHHhc-CceEEEEecCCCC---CCcccHHHHHhhhcCCCCCcEEEEEcCchh
Q 001995 283 ---TVLKQLRESIE-GKKFFLVLDDVWT---EEPQNWEQLLGCLRCGSKESRILVTTRNEK 336 (985)
Q Consensus 283 ---~~~~~l~~~l~-~k~~LlVlDdv~~---~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~ 336 (985)
+..+..++.+. ++-=|||||.+-. ...-..+++...+.....+..||+|-|+..
T Consensus 99 ~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p 159 (191)
T PRK05986 99 AAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAP 159 (191)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 12333344443 4456999999731 223345677788877777889999999764
No 470
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=93.04 E-value=0.46 Score=49.12 Aligned_cols=53 Identities=11% Similarity=0.151 Sum_probs=31.9
Q ss_pred HHHHhcCceEEEEecCCCC-CCcccHHHHHhhhcCC-CCCcEEEEEcCchhhHHh
Q 001995 288 LRESIEGKKFFLVLDDVWT-EEPQNWEQLLGCLRCG-SKESRILVTTRNEKVAIA 340 (985)
Q Consensus 288 l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~ilvTtR~~~v~~~ 340 (985)
+...+-..+-++++|+--. .+....+.+...+... ..|..||++|.+......
T Consensus 135 laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~ 189 (223)
T TIGR03740 135 IAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQ 189 (223)
T ss_pred HHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHH
Confidence 4455556788999998743 2333344444444422 235678999988776544
No 471
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=93.04 E-value=0.1 Score=56.06 Aligned_cols=49 Identities=24% Similarity=0.352 Sum_probs=41.7
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhc
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
+|+|.++.++++++.+.+... ..+..-+|+.++|+.|.||||||+.+.+
T Consensus 62 ~~~G~~~~i~~lV~~fk~AA~-----------g~~~~krIl~L~GPvg~GKSsl~~~Lk~ 110 (358)
T PF08298_consen 62 EFYGMEETIERLVNYFKSAAQ-----------GLEERKRILLLLGPVGGGKSSLAELLKR 110 (358)
T ss_pred cccCcHHHHHHHHHHHHHHHh-----------ccCccceEEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999986541 1145678999999999999999999886
No 472
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=93.03 E-value=0.22 Score=55.96 Aligned_cols=88 Identities=17% Similarity=0.178 Sum_probs=51.1
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCC-------CCCCCC-----HH
Q 001995 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGS-------ATNAVE-----SE 282 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~-------~~~~~~-----~~ 282 (985)
.-..++|+|..|+|||||++.++.... ....++...-.......+++...+..-+.. ..+... ..
T Consensus 155 ~Gqri~I~G~sG~GKTtLl~~Ia~~~~---~~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~ 231 (432)
T PRK06793 155 IGQKIGIFAGSGVGKSTLLGMIAKNAK---ADINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAA 231 (432)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccCC---CCeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHH
Confidence 445889999999999999999987432 112233332223355666666555543211 111111 11
Q ss_pred HHHHHHHHHh--cCceEEEEecCCC
Q 001995 283 TVLKQLRESI--EGKKFFLVLDDVW 305 (985)
Q Consensus 283 ~~~~~l~~~l--~~k~~LlVlDdv~ 305 (985)
.....+.+++ +++++||++||+-
T Consensus 232 ~~a~~iAEyfr~~G~~VLlilDslT 256 (432)
T PRK06793 232 KLATSIAEYFRDQGNNVLLMMDSVT 256 (432)
T ss_pred HHHHHHHHHHHHcCCcEEEEecchH
Confidence 1233344454 5899999999994
No 473
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.02 E-value=0.42 Score=48.03 Aligned_cols=23 Identities=35% Similarity=0.551 Sum_probs=21.1
Q ss_pred CEEEEEEccCCchHHHHHHHHhc
Q 001995 216 PTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
-.+++|+|..|.|||||++.++.
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 33 GTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 36999999999999999999985
No 474
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.00 E-value=0.0088 Score=60.57 Aligned_cols=63 Identities=25% Similarity=0.268 Sum_probs=37.1
Q ss_pred cccCCCCCeEecCCCCCccccchhhcCCCCCcEeeccCcccccccc--hhhhhccccceeeccccccc
Q 001995 621 IKKLIHLRYLALGENPWIKELPEALCELCNLQTLDVSLCHYLKRLP--ERIGQLINLRHLMNSKEEWS 686 (985)
Q Consensus 621 i~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp--~~i~~L~~L~~L~l~~~~~~ 686 (985)
+.+++.|++|.|+-|. |+.|-+ +..|++|+.|.|+.|. +..+- .-+.+|++|+.|-|..|-|.
T Consensus 37 c~kMp~lEVLsLSvNk-IssL~p-l~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~LWL~ENPCc 101 (388)
T KOG2123|consen 37 CEKMPLLEVLSLSVNK-ISSLAP-LQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTLWLDENPCC 101 (388)
T ss_pred HHhcccceeEEeeccc-cccchh-HHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhHhhccCCcc
Confidence 3456666666666666 666543 5666666666666665 44443 12345666666666655553
No 475
>PRK00279 adk adenylate kinase; Reviewed
Probab=92.97 E-value=0.45 Score=48.84 Aligned_cols=21 Identities=38% Similarity=0.450 Sum_probs=19.2
Q ss_pred EEEEEccCCchHHHHHHHHhc
Q 001995 218 IISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 218 vv~I~G~gGiGKTtLa~~v~~ 238 (985)
.|.|+|++|+||||+|+.++.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~ 22 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAE 22 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999886
No 476
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=92.94 E-value=0.061 Score=51.63 Aligned_cols=21 Identities=38% Similarity=0.673 Sum_probs=19.3
Q ss_pred EEEEEccCCchHHHHHHHHhc
Q 001995 218 IISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 218 vv~I~G~gGiGKTtLa~~v~~ 238 (985)
++.|+|++|+||||+|+.+..
T Consensus 1 li~l~G~~GsGKST~a~~l~~ 21 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAE 21 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHh
Confidence 478999999999999999987
No 477
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=92.93 E-value=0.14 Score=46.39 Aligned_cols=51 Identities=20% Similarity=0.358 Sum_probs=34.5
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcc
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFND 239 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 239 (985)
.++|-.-..+.|++.+..--. .....++-|++.+|..|+|||.+|+.+++.
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~----------~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLA----------NPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHc----------CCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 566766555555555542210 001357789999999999999999888875
No 478
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=92.91 E-value=0.067 Score=52.92 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=20.6
Q ss_pred EEEEEEccCCchHHHHHHHHhc
Q 001995 217 TIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
++|.+.|++|+||||+|+.+..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~ 24 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQS 24 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999987
No 479
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.91 E-value=3.1 Score=46.19 Aligned_cols=155 Identities=17% Similarity=0.126 Sum_probs=79.9
Q ss_pred EEEEEEccCCchHHHHHHHHhcchhhhccCCceEE-EEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCc
Q 001995 217 TIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIW-VCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEGK 295 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~w-v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 295 (985)
+--.++|++|.|||+++.++++. .+.-++ +..+..-+..+ ++.++.. ...
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~------L~ydIydLeLt~v~~n~d-Lr~LL~~----------------------t~~ 286 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANY------LNYDIYDLELTEVKLDSD-LRHLLLA----------------------TPN 286 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhh------cCCceEEeeeccccCcHH-HHHHHHh----------------------CCC
Confidence 45689999999999999999983 232222 22222111111 2222221 234
Q ss_pred eEEEEecCCCCC--------C----------cccHHHHHhhhc--CCCC-CcEE-EEEcCchhhHH-h-hcCc-cccccc
Q 001995 296 KFFLVLDDVWTE--------E----------PQNWEQLLGCLR--CGSK-ESRI-LVTTRNEKVAI-A-IGTT-KFNIIP 350 (985)
Q Consensus 296 ~~LlVlDdv~~~--------~----------~~~~~~l~~~l~--~~~~-gs~i-lvTtR~~~v~~-~-~~~~-~~~~~~ 350 (985)
+-+||+.|++.. . .-.+..|+.++. +... +-|| +.||-..+-.. . +... -...+.
T Consensus 287 kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~ 366 (457)
T KOG0743|consen 287 KSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIY 366 (457)
T ss_pred CcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEE
Confidence 566677776421 0 012233444433 2222 2255 55665543221 1 1111 114567
Q ss_pred CCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHHHHHhhhhcC
Q 001995 351 IELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVKTLGSLLRFK 408 (985)
Q Consensus 351 l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~~~~L~~~ 408 (985)
+.-=+.+.-..|+.++..... + ..++.+|.+...|.-+.=..++..|-.+
T Consensus 367 mgyCtf~~fK~La~nYL~~~~----~----h~L~~eie~l~~~~~~tPA~V~e~lm~~ 416 (457)
T KOG0743|consen 367 MGYCTFEAFKTLASNYLGIEE----D----HRLFDEIERLIEETEVTPAQVAEELMKN 416 (457)
T ss_pred cCCCCHHHHHHHHHHhcCCCC----C----cchhHHHHHHhhcCccCHHHHHHHHhhc
Confidence 777788888889988775432 1 2345556665666666556666655333
No 480
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=92.90 E-value=0.15 Score=50.94 Aligned_cols=43 Identities=30% Similarity=0.337 Sum_probs=28.6
Q ss_pred EEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHH
Q 001995 218 IISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDI 261 (985)
Q Consensus 218 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 261 (985)
.|+|+|-||+||||+|...+.. ....+=..++=|++..++++.
T Consensus 2 kIaI~GKGG~GKTtiaalll~~-l~~~~~~~VLvVDaDpd~nL~ 44 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKR-LLSKGGYNVLVVDADPDSNLP 44 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHH-HHhcCCceEEEEeCCCCCChH
Confidence 5899999999999999885542 222221334556766666543
No 481
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=92.89 E-value=0.092 Score=50.02 Aligned_cols=25 Identities=36% Similarity=0.596 Sum_probs=22.9
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhc
Q 001995 214 QRPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
.+..+|.++|.+|+||||+|..++.
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~ 45 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEE 45 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHH
Confidence 4567999999999999999999987
No 482
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=92.88 E-value=0.35 Score=58.77 Aligned_cols=130 Identities=21% Similarity=0.212 Sum_probs=71.6
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 258 (985)
.++|....+.++.+.+.... ....-|.|+|..|+||+++|+.+.+.... .-..-+.|++..-.
T Consensus 326 ~l~g~s~~~~~~~~~~~~~a---------------~~~~pvli~Ge~GtGK~~~A~~ih~~s~r--~~~pfv~vnc~~~~ 388 (638)
T PRK11388 326 HMPQDSPQMRRLIHFGRQAA---------------KSSFPVLLCGEEGVGKALLAQAIHNESER--AAGPYIAVNCQLYP 388 (638)
T ss_pred ceEECCHHHHHHHHHHHHHh---------------CcCCCEEEECCCCcCHHHHHHHHHHhCCc--cCCCeEEEECCCCC
Confidence 68899999988888776543 12234789999999999999999873211 11122334444322
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCCCcccHHHHHhhhcCCC---C--------CcE
Q 001995 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTEEPQNWEQLLGCLRCGS---K--------ESR 327 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~---~--------gs~ 327 (985)
...+...++....+..... ... .+. ....=.|+||++..........+...+..+. . ..|
T Consensus 389 -~~~~~~elfg~~~~~~~~~-~~g----~~~---~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~r 459 (638)
T PRK11388 389 -DEALAEEFLGSDRTDSENG-RLS----KFE---LAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVR 459 (638)
T ss_pred -hHHHHHHhcCCCCcCccCC-CCC----cee---ECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEE
Confidence 1222222222111100000 000 000 1223458999998776666777777765331 1 346
Q ss_pred EEEEcCc
Q 001995 328 ILVTTRN 334 (985)
Q Consensus 328 ilvTtR~ 334 (985)
||.||..
T Consensus 460 iI~~t~~ 466 (638)
T PRK11388 460 VIATTTA 466 (638)
T ss_pred EEEeccC
Confidence 7777654
No 483
>PRK09099 type III secretion system ATPase; Provisional
Probab=92.87 E-value=0.26 Score=55.58 Aligned_cols=87 Identities=17% Similarity=0.194 Sum_probs=49.7
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCC-------CCCCCCHHH----
Q 001995 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGS-------ATNAVESET---- 283 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~-------~~~~~~~~~---- 283 (985)
+-..++|.|..|+|||||++.++..... -..+++..-.......++...+...-... ..+......
T Consensus 162 ~Gq~~~I~G~sG~GKTtLl~~ia~~~~~---d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a~ 238 (441)
T PRK09099 162 EGQRMGIFAPAGVGKSTLMGMFARGTQC---DVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAA 238 (441)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC---CeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHHH
Confidence 4468999999999999999999874221 11344333333344445555554332111 111111111
Q ss_pred -HHHHHHHHh--cCceEEEEecCC
Q 001995 284 -VLKQLRESI--EGKKFFLVLDDV 304 (985)
Q Consensus 284 -~~~~l~~~l--~~k~~LlVlDdv 304 (985)
..-.+.+++ +++.+|+++||+
T Consensus 239 ~~a~tiAEyfrd~G~~VLl~~Dsl 262 (441)
T PRK09099 239 YVATAIAEYFRDRGLRVLLMMDSL 262 (441)
T ss_pred HHHHHHHHHHHHcCCCEEEeccch
Confidence 222344555 589999999999
No 484
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=92.87 E-value=0.075 Score=53.45 Aligned_cols=62 Identities=18% Similarity=0.220 Sum_probs=38.5
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccC
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHF 246 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f 246 (985)
++-|-.+.+++|.+.....- .+...--..+-..++-|.++|++|.|||-+|++|+| +....|
T Consensus 178 dvggckeqieklrevve~pl----l~perfv~lgidppkgvllygppgtgktl~aravan--rtdacf 239 (435)
T KOG0729|consen 178 DVGGCKEQIEKLREVVELPL----LHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVAN--RTDACF 239 (435)
T ss_pred cccchHHHHHHHHHHHhccc----cCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhc--ccCceE
Confidence 45677777787776554221 000000000123557789999999999999999999 554444
No 485
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=92.85 E-value=0.39 Score=50.91 Aligned_cols=56 Identities=20% Similarity=0.328 Sum_probs=40.6
Q ss_pred CEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCC
Q 001995 216 PTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGS 274 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 274 (985)
-.++.|-|.+|+|||++|..++.+.-.... ..++|++.. .+..++...++....+.
T Consensus 19 g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~-~~vly~SlE--m~~~~l~~R~la~~s~v 74 (259)
T PF03796_consen 19 GELTVIAARPGVGKTAFALQIALNAALNGG-YPVLYFSLE--MSEEELAARLLARLSGV 74 (259)
T ss_dssp T-EEEEEESTTSSHHHHHHHHHHHHHHTTS-SEEEEEESS--S-HHHHHHHHHHHHHTS
T ss_pred CcEEEEEecccCCchHHHHHHHHHHHHhcC-CeEEEEcCC--CCHHHHHHHHHHHhhcc
Confidence 358999999999999999999985433322 567777653 46778888888887654
No 486
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=92.83 E-value=0.077 Score=50.47 Aligned_cols=20 Identities=55% Similarity=0.873 Sum_probs=18.5
Q ss_pred EEEEEccCCchHHHHHHHHh
Q 001995 218 IISITGMGGIGKTTLAKLIF 237 (985)
Q Consensus 218 vv~I~G~gGiGKTtLa~~v~ 237 (985)
.|+|+|.+|+||||+|..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999998887
No 487
>PHA02774 E1; Provisional
Probab=92.80 E-value=0.38 Score=55.24 Aligned_cols=38 Identities=13% Similarity=0.145 Sum_probs=28.1
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeC
Q 001995 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVS 255 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 255 (985)
++...+.|+|++|.|||.+|..+.+ ... -..+.||+..
T Consensus 432 PKknciv~~GPP~TGKS~fa~sL~~--~L~--G~vi~fvN~~ 469 (613)
T PHA02774 432 PKKNCLVIYGPPDTGKSMFCMSLIK--FLK--GKVISFVNSK 469 (613)
T ss_pred CcccEEEEECCCCCCHHHHHHHHHH--HhC--CCEEEEEECc
Confidence 4456999999999999999999987 222 2235577653
No 488
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=92.80 E-value=0.092 Score=52.36 Aligned_cols=36 Identities=31% Similarity=0.429 Sum_probs=27.9
Q ss_pred CEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEE
Q 001995 216 PTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVC 253 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~ 253 (985)
.+++.|+|+.|+|||||++.+.. .....|..+++.+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~--~~~~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQ--EFPDKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHH--HSTTTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHH--hcccccccceeec
Confidence 36899999999999999999997 4555665444444
No 489
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=92.79 E-value=0.1 Score=63.94 Aligned_cols=176 Identities=18% Similarity=0.213 Sum_probs=80.3
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHH---HHHHHHH
Q 001995 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETV---LKQLRES 291 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~---~~~l~~~ 291 (985)
+.+++.|+|+.+.||||+.+.+.-..-. .....+|++.... ...++..|+..++....-....... ...+...
T Consensus 326 ~~~~~iITGpN~gGKTt~lktigl~~~m---aq~G~~vpa~~~~-~i~~~~~i~~~ig~~~si~~~lStfS~~m~~~~~I 401 (782)
T PRK00409 326 DKTVLVITGPNTGGKTVTLKTLGLAALM---AKSGLPIPANEPS-EIPVFKEIFADIGDEQSIEQSLSTFSGHMTNIVRI 401 (782)
T ss_pred CceEEEEECCCCCCcHHHHHHHHHHHHH---HHhCCCcccCCCc-cccccceEEEecCCccchhhchhHHHHHHHHHHHH
Confidence 4578999999999999999988542110 1112222222100 0111111111121111001111111 1112222
Q ss_pred hc--CceEEEEecCCCCC-CcccHHHHH----hhhcCCCCCcEEEEEcCchhhHHhhcCcc-cccccCCCCChHHHHHHH
Q 001995 292 IE--GKKFFLVLDDVWTE-EPQNWEQLL----GCLRCGSKESRILVTTRNEKVAIAIGTTK-FNIIPIELLSDEDCWSIF 363 (985)
Q Consensus 292 l~--~k~~LlVlDdv~~~-~~~~~~~l~----~~l~~~~~gs~ilvTtR~~~v~~~~~~~~-~~~~~l~~L~~~e~~~Lf 363 (985)
+. ..+-|+++|..-.. +...-..+. ..+. ..|+.+|+||....+........ .....+. ++ ++.....
T Consensus 402 l~~~~~~sLvLlDE~~~GtDp~eg~ala~aile~l~--~~~~~vIitTH~~el~~~~~~~~~v~~~~~~-~d-~~~l~~~ 477 (782)
T PRK00409 402 LEKADKNSLVLFDELGAGTDPDEGAALAISILEYLR--KRGAKIIATTHYKELKALMYNREGVENASVE-FD-EETLRPT 477 (782)
T ss_pred HHhCCcCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--HCCCEEEEECChHHHHHHHhcCCCeEEEEEE-Ee-cCcCcEE
Confidence 22 47789999998642 222222332 2232 24778999999988776543321 0011111 11 1111100
Q ss_pred HHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHHHHHhhhhc
Q 001995 364 SQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVKTLGSLLRF 407 (985)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~~~~L~~ 407 (985)
+-+..+.+ -...|-.|++++ |+|-.|..-|..+-.
T Consensus 478 --Ykl~~G~~------g~S~a~~iA~~~-Glp~~ii~~A~~~~~ 512 (782)
T PRK00409 478 --YRLLIGIP------GKSNAFEIAKRL-GLPENIIEEAKKLIG 512 (782)
T ss_pred --EEEeeCCC------CCcHHHHHHHHh-CcCHHHHHHHHHHHh
Confidence 11111110 123477788877 777777777766643
No 490
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=92.78 E-value=0.16 Score=54.73 Aligned_cols=49 Identities=22% Similarity=0.262 Sum_probs=33.7
Q ss_pred CEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHH
Q 001995 216 PTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKA 266 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 266 (985)
.+++.+.|.|||||||+|.+.+- ........++-|+.....+...++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~--~lA~~g~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAV--KLAESGKKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHH--HHHHcCCcEEEEEeCCCCchHhhhcc
Confidence 37899999999999999988665 33333344666766665555544433
No 491
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=92.73 E-value=0.76 Score=46.24 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=21.5
Q ss_pred CEEEEEEccCCchHHHHHHHHhcc
Q 001995 216 PTIISITGMGGIGKTTLAKLIFND 239 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~ 239 (985)
-.+++|.|..|.|||||.+.++.-
T Consensus 35 Ge~~~l~G~nGsGKStLl~~i~Gl 58 (194)
T cd03213 35 GELTAIMGPSGAGKSTLLNALAGR 58 (194)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999873
No 492
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=92.71 E-value=2.4 Score=46.80 Aligned_cols=58 Identities=24% Similarity=0.293 Sum_probs=38.3
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhccCCc-eEEEEeC-CCCCHHHHHHHHHHHhcCC
Q 001995 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNE-KIWVCVS-EPFDDIRIAKAILESLKGS 274 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~-~~wv~~~-~~~~~~~~~~~i~~~l~~~ 274 (985)
..+.||.++|.-|.||||-|-.+++ ..+. +.. +.-|++. ..+...+-++.+.++++.+
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA~--~lkk-~~~kvllVaaD~~RpAA~eQL~~La~q~~v~ 157 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLAK--YLKK-KGKKVLLVAADTYRPAAIEQLKQLAEQVGVP 157 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHHHH--HHHH-cCCceEEEecccCChHHHHHHHHHHHHcCCc
Confidence 4578999999999999999998887 3443 333 3333322 2234455677777776543
No 493
>PRK06217 hypothetical protein; Validated
Probab=92.71 E-value=0.071 Score=53.18 Aligned_cols=22 Identities=41% Similarity=0.527 Sum_probs=20.2
Q ss_pred EEEEEccCCchHHHHHHHHhcc
Q 001995 218 IISITGMGGIGKTTLAKLIFND 239 (985)
Q Consensus 218 vv~I~G~gGiGKTtLa~~v~~~ 239 (985)
.|.|.|.+|+||||+|+++...
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999873
No 494
>PF13245 AAA_19: Part of AAA domain
Probab=92.70 E-value=0.17 Score=41.78 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=17.2
Q ss_pred CEEEEEEccCCchHHHHH-HHHhc
Q 001995 216 PTIISITGMGGIGKTTLA-KLIFN 238 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa-~~v~~ 238 (985)
.+++.|.|++|.|||+++ +.+.+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~ 33 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAE 33 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 357889999999999554 44444
No 495
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=92.64 E-value=0.17 Score=51.29 Aligned_cols=22 Identities=32% Similarity=0.235 Sum_probs=20.6
Q ss_pred EEEEEEccCCchHHHHHHHHhc
Q 001995 217 TIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
.+++|+|+.|.||||+.+.+..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 6999999999999999999984
No 496
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=92.62 E-value=0.086 Score=52.45 Aligned_cols=22 Identities=41% Similarity=0.756 Sum_probs=20.7
Q ss_pred EEEEEEccCCchHHHHHHHHhc
Q 001995 217 TIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
++++|+|+.|+||||||+.++.
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHc
Confidence 4899999999999999999997
No 497
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=92.62 E-value=0.23 Score=51.38 Aligned_cols=77 Identities=12% Similarity=0.156 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhc-ccCcHHHHHHHHHHHHhhhchhhHHHH
Q 001995 4 AIVSTILEQLALILVEQTAAGVRLIAGAEEEVENLHRRFHLIKAVVEDAEKR-QMKETAVRVWLDDLKHASYDMEDVLDE 82 (985)
Q Consensus 4 ~~~~~~~~kl~~~~~~~~~~e~~~~~~~~~~~~~L~~~l~~i~~~l~~a~~~-~~~~~~~~~wl~~l~~~~yd~ed~ld~ 82 (985)
+.|..+++.|-. ........+.-++.+++-++.+++.+|.||+..... +........+..++-..||++|+++|-
T Consensus 296 GyVdFlL~NLkd----fq~rysdSlaflKnQiqvIQ~elesLqpFLk~V~ee~~nkh~~~ed~a~~ii~kAyevEYVVDa 371 (402)
T PF12061_consen 296 GYVDFLLKNLKD----FQGRYSDSLAFLKNQIQVIQTELESLQPFLKHVVEEPHNKHDTNEDCATQIIRKAYEVEYVVDA 371 (402)
T ss_pred cHHHHHHhhHHH----HhccccchHHHHHHHHHHHHHHHHHhhHHHHHHHhccchhhhhhhhHHHHHHHHHhheeeeeeh
Confidence 345566666666 333334556678899999999999999999987443 444445889999999999999999998
Q ss_pred HH
Q 001995 83 WN 84 (985)
Q Consensus 83 ~~ 84 (985)
|.
T Consensus 372 Ci 373 (402)
T PF12061_consen 372 CI 373 (402)
T ss_pred hh
Confidence 74
No 498
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.60 E-value=2.9 Score=43.37 Aligned_cols=101 Identities=20% Similarity=0.255 Sum_probs=57.7
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001995 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 258 (985)
++.|.|...+.|.+...-+-. -+.... .....-+-|.++|++|.||+-||++|+... . ..|+++|..
T Consensus 134 DVAGLE~AKeALKEAVILPIK--FPqlFt---GkR~PwrgiLLyGPPGTGKSYLAKAVATEA--n-----STFFSvSSS- 200 (439)
T KOG0739|consen 134 DVAGLEGAKEALKEAVILPIK--FPQLFT---GKRKPWRGILLYGPPGTGKSYLAKAVATEA--N-----STFFSVSSS- 200 (439)
T ss_pred hhccchhHHHHHHhheeeccc--chhhhc---CCCCcceeEEEeCCCCCcHHHHHHHHHhhc--C-----CceEEeehH-
Confidence 577888888888775532210 000000 002345789999999999999999999842 1 234555542
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh-cCceEEEEecCCC
Q 001995 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESI-EGKKFFLVLDDVW 305 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~ 305 (985)
++.+...+. .+.+...+.+.- +.|+.+|++|.++
T Consensus 201 -------DLvSKWmGE------SEkLVknLFemARe~kPSIIFiDEiD 235 (439)
T KOG0739|consen 201 -------DLVSKWMGE------SEKLVKNLFEMARENKPSIIFIDEID 235 (439)
T ss_pred -------HHHHHHhcc------HHHHHHHHHHHHHhcCCcEEEeehhh
Confidence 222222221 122333333322 4789999999985
No 499
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=92.57 E-value=0.68 Score=46.16 Aligned_cols=25 Identities=36% Similarity=0.618 Sum_probs=22.4
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhc
Q 001995 214 QRPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
....++.|+|.+|+||||+|+.+..
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~ 40 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEK 40 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457999999999999999999987
No 500
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=92.54 E-value=0.2 Score=50.74 Aligned_cols=22 Identities=32% Similarity=0.312 Sum_probs=20.4
Q ss_pred CEEEEEEccCCchHHHHHHHHh
Q 001995 216 PTIISITGMGGIGKTTLAKLIF 237 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~ 237 (985)
-+++.|+|+.|.|||||.+.+.
T Consensus 28 ~~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 28 KRVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred ceEEEEECCCCCChHHHHHHHH
Confidence 3799999999999999999987
Done!