BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001998
(984 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 84/203 (41%), Gaps = 40/203 (19%)
Query: 211 SMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAK----AIIEELEGSA 266
++ GM G GK+ LA A D+ ++ C S S+ K ++ +L+
Sbjct: 151 TIYGMAGCGKSVLAAEAVRDHSLLEG-------CFSGGVHWVSIGKQDKSGLLMKLQNLC 203
Query: 267 TDLHELNSLLRRIGANIAGQK-------------FFMVLDNLWTDDYRKWEPFRNCLMNG 313
L + S +R+ NI K ++LD++W D + F N
Sbjct: 204 MRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVW--DPWVLKAFDN----- 256
Query: 314 LRGSKILLTTRKETVA-RMMESTDIVYVQ-GLSEPECWSLFRRFAFSGRTPLECDQLEEI 371
+ILLTTR ++V +M +V V+ GL + + F + L +
Sbjct: 257 --QCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAE----- 309
Query: 372 GRGIVRKCKGLPLAAKTIGSLLQ 394
I+++CKG PL IG+LL+
Sbjct: 310 AHSIIKECKGSPLVVSLIGALLR 332
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 65/276 (23%), Positives = 107/276 (38%), Gaps = 54/276 (19%)
Query: 214 GMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAK----AIIEELEGSATDL 269
GM G GK+ LA A D+ ++ C SV K ++ +L+ T L
Sbjct: 154 GMAGCGKSVLAAEAVRDHSLLEG-------CFPGGVHWVSVGKQDKSGLLMKLQNLCTRL 206
Query: 270 HELNSLLRRIGANIAGQK-------------FFMVLDNLWTDDYRKWEPFRNCLMNGLRG 316
+ S +R+ NI K ++LD++W W L
Sbjct: 207 DQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS----W-----VLKAFDSQ 257
Query: 317 SKILLTTRKETVA-RMMESTDIVYVQG-LSEPECWSLFRRFAFSGRTPLECDQLEEIGRG 374
+ILLTTR ++V +M +V V+ L + + + F + L E
Sbjct: 258 CQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVNMKKA-----DLPEQAHS 312
Query: 375 IVRKCKGLPLAAKTIGSLLQFKRTKEEWQSVLDSEMWQLEEFER----------GLSAPL 424
I+++CKG PL IG+LL + W+ L + Q ++F+R L +
Sbjct: 313 IIKECKGSPLVVSLIGALL--RDFPNRWEYYL--KQLQNKQFKRIRKSSSYDYEALDEAM 368
Query: 425 FLSYNDLPFEIKRCFSYCAIFPKGSSLKKDELVKLW 460
+S L +IK ++ +I K + L LW
Sbjct: 369 SISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILW 404
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 83/203 (40%), Gaps = 40/203 (19%)
Query: 211 SMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAK----AIIEELEGSA 266
++ GM G GK+ LA A D+ ++ C S S+ K ++ +L+
Sbjct: 158 TIYGMAGCGKSVLAAEAVRDHSLLEG-------CFSGGVHWVSIGKQDKSGLLMKLQNLC 210
Query: 267 TDLHELNSLLRRIGANIAGQK-------------FFMVLDNLWTDDYRKWEPFRNCLMNG 313
L + S +R+ NI K ++LD++W D + F N
Sbjct: 211 MRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVW--DPWVLKAFDN----- 263
Query: 314 LRGSKILLTTRKETVA-RMMESTDIVYVQ-GLSEPECWSLFRRFAFSGRTPLECDQLEEI 371
+ILLTT ++V +M +V V+ GL + + F + L +
Sbjct: 264 --QCQILLTTSDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAE----- 316
Query: 372 GRGIVRKCKGLPLAAKTIGSLLQ 394
I+++CKG PL IG+LL+
Sbjct: 317 AHSIIKECKGSPLVVSLIGALLR 339
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 65/276 (23%), Positives = 109/276 (39%), Gaps = 54/276 (19%)
Query: 214 GMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAK----AIIEELEGSATDL 269
GM G GK+ LA A D+ ++ C SV K ++ +L+ T L
Sbjct: 160 GMAGCGKSVLAAEAVRDHSLLEG-------CFPGGVHWVSVGKQDKSGLLMKLQNLCTRL 212
Query: 270 HELNSLLRRIGANIAGQK-------------FFMVLDNLWTDDYRKWEPFRNCLMNGLRG 316
+ S +R+ NI K ++LD++W D + F +
Sbjct: 213 DQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVW--DSWVLKAFDS-------Q 263
Query: 317 SKILLTTRKETVA-RMMESTDIVYVQG-LSEPECWSLFRRFAFSGRTPLECDQLEEIGRG 374
+ILLTTR ++V +M +V V+ L + + + F + L E
Sbjct: 264 CQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVNMKKA-----DLPEQAHS 318
Query: 375 IVRKCKGLPLAAKTIGSLLQFKRTKEEWQSVLDSEMWQLEEFER----------GLSAPL 424
I+++CKG PL IG+LL + W+ L + Q ++F+R L +
Sbjct: 319 IIKECKGSPLVVSLIGALL--RDFPNRWEYYL--KQLQNKQFKRIRKSSSYDYEALDEAM 374
Query: 425 FLSYNDLPFEIKRCFSYCAIFPKGSSLKKDELVKLW 460
+S L +IK ++ +I K + L LW
Sbjct: 375 SISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILW 410
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 64/164 (39%), Gaps = 38/164 (23%)
Query: 550 LVLDKVASFPVSIFNAKKLRSLLIHSPLEVLSPVLKGLFDHLTYGEDDGGENTVHDIPRE 609
L + + + P SI + +LR L I + P L L + L + G E
Sbjct: 134 LARNPLRALPASIASLNRLRELSIRA-----CPELTELPEPLASTDASG----------E 178
Query: 610 IEKLIHLRSLRLAGLKIEELPETCCKLFNLQT-----------------------LDINE 646
+ L++L+SLRL I LP + L NL++ LD+
Sbjct: 179 HQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRG 238
Query: 647 CYRLKRLPQGVGSLVNLRHLVVSLNGDLDYLPKGVERLTSLRTL 690
C L+ P G L+ L++ +L LP + RLT L L
Sbjct: 239 CTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKL 282
Score = 34.3 bits (77), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 48/110 (43%), Gaps = 8/110 (7%)
Query: 555 VASFPVSIFNAKKLRSLLI-HSPLEVLSPVLKGLFDHLTYGE--DDGGENTVHDIPREIE 611
+ S P SI N + L+SL I +SPL L P + HL E D G + + P
Sbjct: 195 IRSLPASIANLQNLKSLKIRNSPLSALGPAIH----HLPKLEELDLRGCTALRNYPPIFG 250
Query: 612 KLIHLRSLRLAGL-KIEELPETCCKLFNLQTLDINECYRLKRLPQGVGSL 660
L+ L L + LP +L L+ LD+ C L RLP + L
Sbjct: 251 GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 607 PREIEKLIHLRSLRLAGLKIEELPETCCKLFNLQTLDINECYRLKRLPQGVGSLVNLRHL 666
P + +L HL+ + + ELP+T + L+TL + L+ LP + SL LR L
Sbjct: 97 PDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLAR-NPLRALPASIASLNRLREL 155
Query: 667 VVSLNGDLDYLPKGV 681
+ +L LP+ +
Sbjct: 156 SIRACPELTELPEPL 170
>pdb|3QFL|A Chain A, Coiled-Coil Domain-Dependent Homodimerization Of
Intracellular Mla Immune Receptors Defines A Minimal
Functional Module For Triggering Cell Death
Length = 115
Score = 37.4 bits (85), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 48/94 (51%), Gaps = 7/94 (7%)
Query: 8 AVLEQLISVAAKEATEEVRLVVGVGQQVEKLKRNFRAIQAVLHDAEH--RQVREEGVRLW 65
A + LI + TEE +L GV + +E L + + A L R+ + +LW
Sbjct: 1 AAISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESXNAALIKIGEVPREQLDSQDKLW 60
Query: 66 LDQLKDTSYDMEDVLDEWITARLKRQTEGVDHDN 99
D++++ SY +EDV+D+++ Q +G+ D+
Sbjct: 61 ADEVRELSYVIEDVVDKFLV-----QVDGIKSDD 89
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 613 LIHLRSLRLAGLKIEE--LPETCCKLFNLQTLDINECYRLKRLPQGVGSLVNLRHLVVSL 670
L L L++AG +E LP+ +L NL LD+++C + P SL +L+ L ++
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503
Query: 671 NGDLDYLPKGV-ERLTSLRTL 690
N L +P G+ +RLTSL+ +
Sbjct: 504 N-QLKSVPDGIFDRLTSLQKI 523
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 33.5 bits (75), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Query: 607 PREIEKLIHLRSLRLAGLKIEELPETCC-KLFNLQTLDINECYRLKRLPQGV-GSLVNLR 664
P + LI+L+ L L ++ LP L L LD+ +L LP V LV+L+
Sbjct: 57 PGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT-NQLTVLPSAVFDRLVHLK 115
Query: 665 HLVVSLNGDLDYLPKGVERLTSLRTL 690
L + N L LP+G+ERLT L L
Sbjct: 116 ELFMCCN-KLTELPRGIERLTHLTHL 140
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 28/105 (26%)
Query: 586 GLFDHLT-YGEDDGGENTVHDIPREI-EKLIHLRSLRLAGLKIEELPETCCKLFNLQTLD 643
G+FD LT D G N + +P + ++L+HL+ L +
Sbjct: 82 GVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMC--------------------- 120
Query: 644 INECYRLKRLPQGVGSLVNLRHLVVSLNGDLDYLPKGV-ERLTSL 687
C +L LP+G+ L +L HL + N L +P G +RL+SL
Sbjct: 121 ---CNKLTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSL 161
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 60/122 (49%), Gaps = 8/122 (6%)
Query: 550 LVLDKVASFPVSIFNAKKLRSLLIHSPLEVLSPVLKGLFDHLTYGEDDGGENTVHDIPRE 609
+V+ K + + +++A L +L I + + + K +D LT +G N++ ++P E
Sbjct: 213 MVMPKDSKYDDQLWHALDLSNLQI---FNISANIFK--YDFLTRLYLNG--NSLTELPAE 265
Query: 610 IEKLIHLRSLRLAGLKIEELPETCCKLFNLQTLDINECYRLKRLPQGVGSLVNLRHLVVS 669
I+ L +LR L L+ ++ LP F L+ + + LP G+L NL+ L V
Sbjct: 266 IKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVE 324
Query: 670 LN 671
N
Sbjct: 325 GN 326
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 613 LIHLRSLRLAGLKIEE--LPETCCKLFNLQTLDINECYRLKRLPQGVGSLVNLRHLVVSL 670
L L L++AG +E LP+ +L NL LD+++C + P SL +L+ L +S
Sbjct: 468 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 527
Query: 671 NG--DLDYLPKGVERLTSLRTL 690
N LD P + L SL+ L
Sbjct: 528 NNFFSLDTFP--YKCLNSLQVL 547
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 30.4 bits (67), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 606 IPREIEKLIHLRSLRLAGLKIE-ELPETCCKLFNLQTLDINECYRLKRLPQGVGSLVNLR 664
IP + L LR L+L +E E+P+ + L+TL ++ +P G+ + NL
Sbjct: 434 IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLN 493
Query: 665 HLVVSLNGDLDYLPKGVERLTSLRTLR 691
+ +S N +PK + RL +L L+
Sbjct: 494 WISLSNNRLTGEIPKWIGRLENLAILK 520
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 616 LRSLRLAGLKIEE--LPETCCKLFNLQTLDINECYRLKRLPQGVGSLVNLRHLVVSLNG- 672
L L++AG +E LP+ +L NL LD+++C + P SL +L+ L +S N
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 506
Query: 673 -DLDYLPKGVERLTSLRTL 690
LD P + L SL+ L
Sbjct: 507 FSLDTFP--YKCLNSLQVL 523
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 606 IPREIEKLIHLRSLRLAGLKIE-ELPETCCKLFNLQTLDINECYRLKRLPQGVGSLVNLR 664
IP + L LR L+L +E E+P+ + L+TL ++ +P G+ + NL
Sbjct: 431 IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLN 490
Query: 665 HLVVSLNGDLDYLPKGVERLTSLRTLR 691
+ +S N +PK + RL +L L+
Sbjct: 491 WISLSNNRLTGEIPKWIGRLENLAILK 517
>pdb|3JUA|A Chain A, Structural Basis Of Yap Recognition By Tead4 In The Hippo
Pathway
pdb|3JUA|C Chain C, Structural Basis Of Yap Recognition By Tead4 In The Hippo
Pathway
pdb|3JUA|E Chain E, Structural Basis Of Yap Recognition By Tead4 In The Hippo
Pathway
pdb|3JUA|G Chain G, Structural Basis Of Yap Recognition By Tead4 In The Hippo
Pathway
Length = 220
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 900 LCYLDIRFCRKLKSLPDQLLQSSTLEKLRIIRAPILRERFKKDTGEDWSKISHIRDI 956
LC I F KLK LP++ + +S LE I++ R DT E I+++ ++
Sbjct: 152 LCEYMINFIHKLKHLPEKYMMNSVLENFTILQVVTNR-----DTQETLLCIAYVFEV 203
>pdb|4EAZ|A Chain A, Vgll1-Tead4 Structure
pdb|4EAZ|B Chain B, Vgll1-Tead4 Structure
Length = 223
Score = 30.0 bits (66), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 900 LCYLDIRFCRKLKSLPDQLLQSSTLEKLRIIRAPILRE 937
LC I F KLK LP++ + +S LE I++ R+
Sbjct: 155 LCEYMINFIHKLKHLPEKYMMNSVLENFTILQVVTNRD 192
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 30.0 bits (66), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 613 LIHLRSLRLAGLKIEE--LPETCCKLFNLQTLDINECYRLKRLPQGVGSLVNLRHLVVSL 670
L L L++AG +E LP+ +L NL LD+++C + P SL +L+ L +S
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 208
Query: 671 NG--DLDYLPKGVERLTSLRTL 690
N LD P + L SL+ L
Sbjct: 209 NNFFSLDTFP--YKCLNSLQVL 228
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,517,976
Number of Sequences: 62578
Number of extensions: 1121974
Number of successful extensions: 2804
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 2782
Number of HSP's gapped (non-prelim): 31
length of query: 984
length of database: 14,973,337
effective HSP length: 108
effective length of query: 876
effective length of database: 8,214,913
effective search space: 7196263788
effective search space used: 7196263788
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)