Query 001998
Match_columns 984
No_of_seqs 514 out of 4454
Neff 9.8
Searched_HMMs 46136
Date Thu Mar 28 14:12:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001998.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001998hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.1E-90 2.4E-95 823.4 44.2 646 13-695 8-675 (889)
2 PLN03210 Resistant to P. syrin 100.0 3.7E-64 8E-69 633.2 46.9 718 137-937 134-908 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 1.2E-44 2.7E-49 392.2 13.6 279 184-470 1-286 (287)
4 PLN00113 leucine-rich repeat r 99.9 1.8E-24 3.9E-29 274.5 15.5 400 543-965 164-585 (968)
5 PLN00113 leucine-rich repeat r 99.9 2.9E-24 6.3E-29 272.7 17.0 358 543-933 93-463 (968)
6 KOG0444 Cytoskeletal regulator 99.9 3E-25 6.4E-30 237.2 -6.1 339 544-936 33-376 (1255)
7 KOG0444 Cytoskeletal regulator 99.9 2.6E-24 5.6E-29 230.1 -6.4 323 542-916 54-380 (1255)
8 KOG0472 Leucine-rich repeat pr 99.8 1.1E-22 2.3E-27 207.9 -6.7 237 545-817 70-307 (565)
9 KOG4194 Membrane glycoprotein 99.8 7.8E-21 1.7E-25 202.8 3.8 326 566-934 78-428 (873)
10 PLN03210 Resistant to P. syrin 99.8 5.2E-19 1.1E-23 224.3 19.1 329 542-915 557-910 (1153)
11 KOG4194 Membrane glycoprotein 99.8 1.4E-20 3E-25 201.0 3.5 341 543-931 102-448 (873)
12 KOG0472 Leucine-rich repeat pr 99.8 1.5E-22 3.3E-27 206.8 -12.2 402 545-984 47-561 (565)
13 KOG0618 Serine/threonine phosp 99.7 6.8E-19 1.5E-23 198.5 -6.2 140 545-694 47-187 (1081)
14 KOG0618 Serine/threonine phosp 99.6 1.5E-18 3.3E-23 195.7 -8.3 285 553-849 8-328 (1081)
15 PRK15387 E3 ubiquitin-protein 99.5 2.6E-13 5.6E-18 159.5 14.1 36 898-934 422-457 (788)
16 PRK15370 E3 ubiquitin-protein 99.4 3.3E-13 7.2E-18 159.9 9.8 111 547-671 182-293 (754)
17 KOG0617 Ras suppressor protein 99.4 3.7E-15 8.1E-20 135.3 -5.2 166 610-828 29-194 (264)
18 PRK15387 E3 ubiquitin-protein 99.4 1.8E-12 3.8E-17 152.6 12.7 254 597-966 207-460 (788)
19 KOG4237 Extracellular matrix p 99.4 5.7E-14 1.2E-18 144.5 -1.1 129 541-672 65-199 (498)
20 PRK04841 transcriptional regul 99.3 7.8E-11 1.7E-15 149.4 24.8 293 178-519 13-332 (903)
21 KOG4658 Apoptotic ATPase [Sign 99.3 3.3E-13 7.1E-18 162.4 2.4 324 564-932 521-856 (889)
22 PRK00411 cdc6 cell division co 99.3 6.2E-10 1.3E-14 126.3 27.7 318 175-508 26-374 (394)
23 PRK15370 E3 ubiquitin-protein 99.3 1.6E-12 3.5E-17 154.1 6.1 224 541-841 197-426 (754)
24 KOG4237 Extracellular matrix p 99.3 1.7E-13 3.7E-18 141.1 -5.1 135 557-696 60-199 (498)
25 KOG0617 Ras suppressor protein 99.2 2.9E-13 6.3E-18 123.2 -5.3 132 546-682 59-193 (264)
26 TIGR03015 pepcterm_ATPase puta 99.2 2.7E-09 5.9E-14 114.3 21.9 182 207-393 43-242 (269)
27 TIGR02928 orc1/cdc6 family rep 99.2 1.3E-08 2.9E-13 114.2 27.4 302 176-495 12-351 (365)
28 cd00116 LRR_RI Leucine-rich re 99.1 8.6E-12 1.9E-16 137.7 -2.5 64 608-671 17-91 (319)
29 cd00116 LRR_RI Leucine-rich re 99.1 2.4E-11 5.1E-16 134.1 -0.4 90 742-841 190-289 (319)
30 PF01637 Arch_ATPase: Archaeal 99.0 1.2E-09 2.7E-14 114.4 11.4 193 181-388 1-233 (234)
31 PF05729 NACHT: NACHT domain 98.9 6.7E-09 1.5E-13 102.2 12.0 143 208-355 1-162 (166)
32 PRK00080 ruvB Holliday junctio 98.9 5.4E-09 1.2E-13 114.6 12.0 276 178-492 24-308 (328)
33 TIGR00635 ruvB Holliday juncti 98.9 6.4E-09 1.4E-13 113.4 12.5 267 179-492 4-287 (305)
34 COG2909 MalT ATP-dependent tra 98.9 1.6E-07 3.5E-12 107.7 23.3 294 178-519 18-338 (894)
35 KOG0532 Leucine-rich repeat (L 98.9 1.5E-10 3.2E-15 125.1 -3.2 120 568-693 77-197 (722)
36 KOG0532 Leucine-rich repeat (L 98.7 5.4E-10 1.2E-14 121.0 -4.6 188 597-841 81-271 (722)
37 PRK06893 DNA replication initi 98.7 3.4E-07 7.3E-12 94.6 15.8 153 207-390 39-204 (229)
38 PTZ00112 origin recognition co 98.7 5.3E-07 1.1E-11 104.2 18.4 215 177-394 753-987 (1164)
39 COG4886 Leucine-rich repeat (L 98.6 2.5E-08 5.4E-13 113.4 5.1 106 588-695 112-219 (394)
40 PF14580 LRR_9: Leucine-rich r 98.6 2.9E-08 6.3E-13 96.0 4.0 130 562-698 15-153 (175)
41 PRK13342 recombination factor 98.5 7.9E-07 1.7E-11 100.6 14.0 178 179-391 12-198 (413)
42 KOG1259 Nischarin, modulator o 98.5 3.4E-08 7.5E-13 98.6 2.0 117 776-916 300-416 (490)
43 COG3899 Predicted ATPase [Gene 98.5 2.5E-06 5.4E-11 104.0 18.2 313 180-517 1-384 (849)
44 TIGR03420 DnaA_homol_Hda DnaA 98.5 2.2E-06 4.8E-11 89.0 15.5 170 184-391 22-203 (226)
45 KOG1259 Nischarin, modulator o 98.5 1.4E-08 2.9E-13 101.4 -1.3 138 609-801 279-416 (490)
46 PRK05564 DNA polymerase III su 98.5 4.6E-06 1E-10 90.9 17.5 179 179-388 4-189 (313)
47 PRK14963 DNA polymerase III su 98.5 5.4E-07 1.2E-11 103.0 10.5 197 179-386 14-214 (504)
48 PRK14961 DNA polymerase III su 98.5 5.3E-06 1.1E-10 92.1 18.1 192 179-387 16-218 (363)
49 COG4886 Leucine-rich repeat (L 98.5 1.1E-07 2.4E-12 108.0 4.9 127 560-691 110-238 (394)
50 KOG3207 Beta-tubulin folding c 98.5 3.7E-08 8E-13 103.9 0.8 63 608-671 115-182 (505)
51 PF13401 AAA_22: AAA domain; P 98.5 3E-07 6.5E-12 86.3 6.6 118 206-325 3-125 (131)
52 PF14580 LRR_9: Leucine-rich r 98.4 4.4E-08 9.5E-13 94.7 0.7 79 590-671 17-98 (175)
53 COG2256 MGS1 ATPase related to 98.4 1.2E-06 2.7E-11 92.3 11.3 173 177-386 28-209 (436)
54 PRK07003 DNA polymerase III su 98.4 4.4E-06 9.6E-11 96.5 16.4 183 179-389 16-221 (830)
55 PRK14960 DNA polymerase III su 98.4 4.5E-06 9.7E-11 95.5 16.1 183 179-389 15-219 (702)
56 KOG4341 F-box protein containi 98.4 1.8E-08 4E-13 105.6 -2.8 163 777-960 288-458 (483)
57 PF13191 AAA_16: AAA ATPase do 98.4 5.1E-07 1.1E-11 90.6 7.6 48 180-231 1-48 (185)
58 PRK14949 DNA polymerase III su 98.4 5.3E-06 1.2E-10 97.9 16.7 183 179-389 16-220 (944)
59 TIGR02903 spore_lon_C ATP-depe 98.4 4.7E-05 1E-09 90.0 24.5 203 179-392 154-398 (615)
60 PRK06645 DNA polymerase III su 98.4 7.1E-06 1.5E-10 93.4 16.9 194 179-386 21-226 (507)
61 KOG3207 Beta-tubulin folding c 98.4 1.4E-07 3.1E-12 99.6 2.7 153 542-695 120-281 (505)
62 cd01128 rho_factor Transcripti 98.4 5.4E-07 1.2E-11 93.0 6.8 89 207-296 16-113 (249)
63 PF13173 AAA_14: AAA domain 98.4 1.4E-06 3E-11 81.1 8.8 119 208-348 3-127 (128)
64 COG1474 CDC6 Cdc6-related prot 98.4 3E-05 6.4E-10 85.1 20.4 207 178-390 16-239 (366)
65 PRK12402 replication factor C 98.4 8.2E-06 1.8E-10 90.6 16.0 196 179-388 15-225 (337)
66 PRK04195 replication factor C 98.3 3.3E-05 7.2E-10 89.3 21.4 186 178-393 13-206 (482)
67 PTZ00202 tuzin; Provisional 98.3 1.7E-05 3.8E-10 85.3 17.1 170 173-355 256-433 (550)
68 cd00009 AAA The AAA+ (ATPases 98.3 3.3E-06 7.2E-11 81.1 10.9 125 182-327 1-131 (151)
69 PRK12323 DNA polymerase III su 98.3 8.5E-06 1.9E-10 93.0 15.2 196 179-389 16-225 (700)
70 PRK14957 DNA polymerase III su 98.3 1.4E-05 3.1E-10 91.6 16.7 187 179-393 16-225 (546)
71 KOG4341 F-box protein containi 98.3 3.9E-08 8.5E-13 103.2 -4.3 143 783-941 268-420 (483)
72 PRK14956 DNA polymerase III su 98.2 1.4E-05 3.1E-10 89.0 14.6 196 179-387 18-220 (484)
73 PF05496 RuvB_N: Holliday junc 98.2 4.8E-06 1.1E-10 82.2 9.5 182 178-393 23-225 (233)
74 PLN03025 replication factor C 98.2 1.6E-05 3.5E-10 86.8 14.8 182 179-386 13-197 (319)
75 PRK00440 rfc replication facto 98.2 2.4E-05 5.3E-10 86.1 16.5 181 179-387 17-201 (319)
76 PRK14964 DNA polymerase III su 98.2 2.4E-05 5.2E-10 88.3 16.3 181 179-386 13-214 (491)
77 PRK07994 DNA polymerase III su 98.2 1.8E-05 3.9E-10 92.1 15.7 195 179-390 16-221 (647)
78 PRK08691 DNA polymerase III su 98.2 1.6E-05 3.4E-10 92.1 14.9 183 179-389 16-220 (709)
79 KOG1909 Ran GTPase-activating 98.2 4.7E-07 1E-11 93.2 2.3 236 562-841 26-309 (382)
80 PRK08727 hypothetical protein; 98.2 3.3E-05 7.1E-10 80.0 16.1 148 208-386 42-201 (233)
81 PRK14962 DNA polymerase III su 98.2 2.7E-05 5.9E-10 88.4 16.3 187 179-393 14-223 (472)
82 PRK09376 rho transcription ter 98.2 2.7E-06 5.8E-11 91.3 7.4 87 208-295 170-265 (416)
83 COG3903 Predicted ATPase [Gene 98.2 1.9E-06 4.1E-11 91.7 6.2 244 206-464 13-266 (414)
84 PRK14951 DNA polymerase III su 98.2 2.9E-05 6.2E-10 90.3 16.4 197 179-389 16-225 (618)
85 PRK14958 DNA polymerase III su 98.2 2.6E-05 5.7E-10 89.6 15.9 183 179-388 16-219 (509)
86 PRK09112 DNA polymerase III su 98.2 4E-05 8.6E-10 83.8 16.2 196 177-390 21-241 (351)
87 TIGR02397 dnaX_nterm DNA polym 98.2 6.2E-05 1.3E-09 84.2 18.4 184 178-390 13-219 (355)
88 PRK13341 recombination factor 98.2 1.1E-05 2.4E-10 95.9 12.5 169 179-384 28-212 (725)
89 PF13855 LRR_8: Leucine rich r 98.2 2.5E-06 5.4E-11 67.5 4.7 57 614-671 1-59 (61)
90 PRK05896 DNA polymerase III su 98.2 4.6E-05 1E-09 87.4 16.4 197 178-391 15-223 (605)
91 PRK07471 DNA polymerase III su 98.1 9.3E-05 2E-09 81.4 17.8 197 178-390 18-239 (365)
92 KOG2120 SCF ubiquitin ligase, 98.1 1.2E-07 2.7E-12 94.8 -4.3 58 783-841 286-349 (419)
93 KOG2227 Pre-initiation complex 98.1 7.5E-05 1.6E-09 80.5 16.0 214 177-393 148-376 (529)
94 PRK14955 DNA polymerase III su 98.1 4.8E-05 1E-09 85.6 15.1 198 179-386 16-225 (397)
95 PRK07940 DNA polymerase III su 98.1 0.0001 2.2E-09 81.7 17.2 184 179-389 5-213 (394)
96 PLN03150 hypothetical protein; 98.1 5.5E-06 1.2E-10 98.7 7.5 96 597-692 424-522 (623)
97 PLN03150 hypothetical protein; 98.1 3.5E-06 7.6E-11 100.3 5.8 102 568-671 420-525 (623)
98 TIGR00678 holB DNA polymerase 98.1 0.0001 2.2E-09 73.9 15.6 91 285-385 95-187 (188)
99 PRK08084 DNA replication initi 98.1 0.00015 3.2E-09 75.3 17.0 151 208-389 46-209 (235)
100 KOG1909 Ran GTPase-activating 98.1 6.5E-07 1.4E-11 92.2 -0.5 84 588-671 26-130 (382)
101 PRK09111 DNA polymerase III su 98.1 7.8E-05 1.7E-09 87.0 16.3 198 178-389 23-233 (598)
102 PRK09087 hypothetical protein; 98.1 7.8E-05 1.7E-09 76.5 14.5 141 207-388 44-194 (226)
103 PRK08903 DnaA regulatory inact 98.1 9.5E-05 2.1E-09 76.7 15.2 152 207-393 42-203 (227)
104 PRK14969 DNA polymerase III su 98.0 7.3E-05 1.6E-09 86.6 15.6 181 179-386 16-217 (527)
105 PRK07764 DNA polymerase III su 98.0 9.5E-05 2.1E-09 89.3 16.9 191 179-386 15-218 (824)
106 PRK15386 type III secretion pr 98.0 1.4E-05 3.1E-10 86.8 8.8 66 610-680 48-113 (426)
107 PF12799 LRR_4: Leucine Rich r 98.0 5.2E-06 1.1E-10 59.9 3.7 41 614-655 1-41 (44)
108 PF05621 TniB: Bacterial TniB 98.0 0.00013 2.8E-09 75.9 15.0 201 179-384 34-256 (302)
109 PRK14959 DNA polymerase III su 98.0 0.00012 2.6E-09 84.5 16.2 198 179-393 16-225 (624)
110 PRK05642 DNA replication initi 98.0 0.0002 4.4E-09 74.1 16.4 153 208-391 46-210 (234)
111 PRK14950 DNA polymerase III su 98.0 8.9E-05 1.9E-09 87.5 15.1 195 179-389 16-221 (585)
112 PRK14952 DNA polymerase III su 98.0 0.0002 4.3E-09 83.1 17.5 198 179-393 13-224 (584)
113 TIGR01242 26Sp45 26S proteasom 98.0 7.3E-05 1.6E-09 83.4 13.6 183 176-383 119-328 (364)
114 PF00308 Bac_DnaA: Bacterial d 98.0 0.00017 3.8E-09 73.6 15.1 158 207-386 34-205 (219)
115 KOG2028 ATPase related to the 98.0 5.3E-05 1.2E-09 78.4 11.0 146 178-355 143-293 (554)
116 PF13855 LRR_8: Leucine rich r 98.0 6.9E-06 1.5E-10 64.9 3.7 56 593-648 2-60 (61)
117 PRK14970 DNA polymerase III su 97.9 0.00024 5.2E-09 79.6 17.1 179 179-385 17-205 (367)
118 TIGR00767 rho transcription te 97.9 2.8E-05 6.1E-10 84.1 9.1 89 207-296 168-265 (415)
119 PRK14954 DNA polymerase III su 97.9 0.00029 6.2E-09 82.5 17.3 202 179-390 16-230 (620)
120 PRK14953 DNA polymerase III su 97.9 0.00051 1.1E-08 78.7 18.6 184 179-390 16-221 (486)
121 PRK07133 DNA polymerase III su 97.9 0.00038 8.2E-09 81.8 17.6 190 179-387 18-217 (725)
122 PRK14087 dnaA chromosomal repl 97.9 0.0002 4.4E-09 81.3 15.0 168 208-391 142-321 (450)
123 PF14516 AAA_35: AAA-like doma 97.9 0.0013 2.8E-08 72.0 20.7 203 176-396 8-246 (331)
124 PRK08451 DNA polymerase III su 97.9 0.00049 1.1E-08 78.7 17.5 179 179-389 14-218 (535)
125 KOG2543 Origin recognition com 97.9 0.0006 1.3E-08 71.8 16.5 167 178-355 5-192 (438)
126 PRK14971 DNA polymerase III su 97.9 0.00039 8.4E-09 81.9 17.2 180 179-386 17-219 (614)
127 PRK11331 5-methylcytosine-spec 97.8 8.7E-05 1.9E-09 81.8 10.9 108 179-299 175-285 (459)
128 KOG0531 Protein phosphatase 1, 97.8 2.4E-06 5.2E-11 97.2 -1.4 80 589-671 92-172 (414)
129 PRK14948 DNA polymerase III su 97.8 0.00062 1.3E-08 80.2 17.9 196 179-389 16-222 (620)
130 PF05673 DUF815: Protein of un 97.8 0.00096 2.1E-08 67.2 16.6 127 175-329 23-154 (249)
131 PRK06305 DNA polymerase III su 97.8 0.00044 9.6E-09 78.6 16.1 183 178-389 16-223 (451)
132 KOG0989 Replication factor C, 97.7 0.00023 4.9E-09 72.8 10.8 185 178-384 35-225 (346)
133 CHL00181 cbbX CbbX; Provisiona 97.7 0.0013 2.8E-08 70.1 17.2 135 208-358 60-211 (287)
134 TIGR00362 DnaA chromosomal rep 97.7 0.0014 3.1E-08 74.4 18.6 157 207-385 136-306 (405)
135 PHA02544 44 clamp loader, smal 97.7 0.00039 8.3E-09 76.3 13.6 150 177-354 19-171 (316)
136 PRK14965 DNA polymerase III su 97.7 0.0007 1.5E-08 79.6 15.9 197 179-392 16-224 (576)
137 PRK03992 proteasome-activating 97.7 0.00045 9.8E-09 77.4 13.2 181 177-382 129-336 (389)
138 PRK12422 chromosomal replicati 97.7 0.00095 2.1E-08 75.6 15.8 153 207-381 141-305 (445)
139 TIGR02880 cbbX_cfxQ probable R 97.7 0.0011 2.4E-08 70.7 15.6 133 209-357 60-209 (284)
140 KOG0531 Protein phosphatase 1, 97.7 8.6E-06 1.9E-10 92.7 -0.6 103 591-697 71-174 (414)
141 PRK06647 DNA polymerase III su 97.6 0.0014 3E-08 76.4 17.3 194 179-389 16-220 (563)
142 COG2255 RuvB Holliday junction 97.6 0.00054 1.2E-08 69.3 11.3 179 179-391 26-225 (332)
143 KOG2120 SCF ubiquitin ligase, 97.6 3.1E-06 6.6E-11 85.1 -4.7 162 740-933 205-374 (419)
144 PRK14088 dnaA chromosomal repl 97.6 0.0012 2.7E-08 75.0 15.4 156 208-384 131-300 (440)
145 KOG1859 Leucine-rich repeat pr 97.6 4.7E-06 1E-10 93.4 -4.0 96 597-697 170-266 (1096)
146 PRK07399 DNA polymerase III su 97.6 0.0018 3.8E-08 70.0 15.4 197 179-389 4-221 (314)
147 PRK05563 DNA polymerase III su 97.5 0.0024 5.2E-08 74.7 17.4 193 178-387 15-218 (559)
148 TIGR02881 spore_V_K stage V sp 97.5 0.0012 2.7E-08 69.8 13.5 163 180-358 7-193 (261)
149 PRK00149 dnaA chromosomal repl 97.5 0.0025 5.4E-08 73.3 16.7 158 207-386 148-319 (450)
150 PRK06620 hypothetical protein; 97.5 0.0018 3.8E-08 65.9 13.5 132 208-386 45-186 (214)
151 TIGR03345 VI_ClpV1 type VI sec 97.5 0.0015 3.3E-08 80.2 15.4 153 179-356 187-363 (852)
152 PRK14086 dnaA chromosomal repl 97.5 0.0024 5.2E-08 73.7 15.9 153 209-383 316-482 (617)
153 PRK15386 type III secretion pr 97.5 0.00034 7.3E-09 76.4 8.5 50 782-838 71-120 (426)
154 PRK08116 hypothetical protein; 97.4 0.00049 1.1E-08 72.6 9.3 104 208-326 115-221 (268)
155 KOG2982 Uncharacterized conser 97.4 9.5E-05 2.1E-09 74.7 3.6 206 589-839 68-288 (418)
156 PF12799 LRR_4: Leucine Rich r 97.4 0.00011 2.4E-09 53.0 2.8 39 593-631 2-41 (44)
157 PRK05707 DNA polymerase III su 97.4 0.0034 7.3E-08 68.2 15.3 97 285-389 105-203 (328)
158 KOG4579 Leucine-rich repeat (L 97.3 4.1E-05 8.8E-10 68.3 -0.3 82 589-671 50-133 (177)
159 TIGR02639 ClpA ATP-dependent C 97.3 0.0019 4.1E-08 78.8 13.9 156 179-356 182-358 (731)
160 COG0542 clpA ATP-binding subun 97.3 0.0045 9.7E-08 73.0 15.8 135 179-325 491-643 (786)
161 CHL00095 clpC Clp protease ATP 97.3 0.0021 4.5E-08 79.4 13.8 154 179-354 179-352 (821)
162 PF00004 AAA: ATPase family as 97.3 0.00057 1.2E-08 64.0 7.1 96 210-325 1-111 (132)
163 PRK10536 hypothetical protein; 97.3 0.0043 9.3E-08 63.5 13.6 137 177-326 53-213 (262)
164 KOG0991 Replication factor C, 97.2 0.0039 8.5E-08 61.0 11.8 45 178-229 26-70 (333)
165 smart00382 AAA ATPases associa 97.2 0.0017 3.7E-08 61.4 9.6 87 208-298 3-90 (148)
166 COG2607 Predicted ATPase (AAA+ 97.2 0.026 5.7E-07 56.0 17.0 123 176-326 57-183 (287)
167 PF13177 DNA_pol3_delta2: DNA 97.2 0.0042 9.1E-08 60.2 11.6 139 183-344 1-162 (162)
168 PRK10787 DNA-binding ATP-depen 97.2 0.0054 1.2E-07 74.5 14.9 166 178-356 321-506 (784)
169 COG1373 Predicted ATPase (AAA+ 97.2 0.0063 1.4E-07 68.2 14.4 119 209-352 39-163 (398)
170 PRK10865 protein disaggregatio 97.2 0.0034 7.3E-08 77.5 13.3 139 179-325 568-720 (857)
171 PRK08769 DNA polymerase III su 97.1 0.012 2.7E-07 63.2 15.9 96 285-390 112-209 (319)
172 COG3267 ExeA Type II secretory 97.1 0.027 5.8E-07 56.8 16.8 181 206-391 50-247 (269)
173 TIGR03346 chaperone_ClpB ATP-d 97.1 0.0047 1E-07 76.6 14.5 136 179-325 565-717 (852)
174 COG0593 DnaA ATPase involved i 97.1 0.0031 6.6E-08 69.2 11.3 139 206-361 112-262 (408)
175 TIGR00763 lon ATP-dependent pr 97.1 0.018 4E-07 70.7 19.4 166 178-356 319-505 (775)
176 TIGR02639 ClpA ATP-dependent C 97.1 0.0048 1E-07 75.3 13.8 121 179-313 454-580 (731)
177 TIGR00602 rad24 checkpoint pro 97.1 0.0028 6.1E-08 74.2 11.2 52 177-230 82-133 (637)
178 PRK06090 DNA polymerase III su 97.1 0.016 3.4E-07 62.3 16.0 93 285-389 107-201 (319)
179 PRK08058 DNA polymerase III su 97.0 0.0089 1.9E-07 65.4 13.9 152 180-355 6-181 (329)
180 COG5238 RNA1 Ran GTPase-activa 97.0 9E-05 2E-09 73.8 -1.6 83 589-671 27-130 (388)
181 PRK08118 topology modulation p 97.0 0.00025 5.4E-09 69.1 1.4 34 209-242 3-37 (167)
182 PRK06871 DNA polymerase III su 97.0 0.026 5.5E-07 60.9 16.8 180 187-386 10-200 (325)
183 PRK08181 transposase; Validate 97.0 0.002 4.4E-08 67.5 8.2 100 209-326 108-209 (269)
184 PRK11034 clpA ATP-dependent Cl 97.0 0.0042 9.1E-08 74.8 11.5 155 179-356 186-362 (758)
185 PF01695 IstB_IS21: IstB-like 97.0 0.00086 1.9E-08 66.0 4.8 99 208-325 48-149 (178)
186 PF04665 Pox_A32: Poxvirus A32 97.0 0.0014 3E-08 66.7 6.3 35 209-245 15-49 (241)
187 KOG4579 Leucine-rich repeat (L 97.0 0.00017 3.6E-09 64.5 -0.4 92 562-656 49-141 (177)
188 KOG3665 ZYG-1-like serine/thre 96.9 0.00074 1.6E-08 80.4 4.6 127 543-672 122-261 (699)
189 PTZ00361 26 proteosome regulat 96.9 0.0057 1.2E-07 68.7 11.3 159 179-357 183-368 (438)
190 TIGR03346 chaperone_ClpB ATP-d 96.9 0.0082 1.8E-07 74.5 13.6 153 179-355 173-348 (852)
191 PRK08939 primosomal protein Dn 96.9 0.0059 1.3E-07 65.6 10.7 122 183-325 135-260 (306)
192 PRK12377 putative replication 96.9 0.0034 7.5E-08 64.9 8.6 101 208-325 102-205 (248)
193 KOG1514 Origin recognition com 96.9 0.035 7.5E-07 63.6 16.9 207 179-393 396-625 (767)
194 PRK07952 DNA replication prote 96.9 0.017 3.7E-07 59.7 13.3 103 207-325 99-204 (244)
195 PRK10865 protein disaggregatio 96.9 0.0079 1.7E-07 74.3 12.7 45 179-230 178-222 (857)
196 PTZ00454 26S protease regulato 96.8 0.011 2.3E-07 66.0 12.6 182 177-383 143-351 (398)
197 TIGR02640 gas_vesic_GvpN gas v 96.8 0.031 6.7E-07 59.1 15.5 42 209-255 23-64 (262)
198 TIGR03345 VI_ClpV1 type VI sec 96.8 0.0035 7.7E-08 77.0 9.4 137 179-325 566-718 (852)
199 TIGR03689 pup_AAA proteasome A 96.8 0.0096 2.1E-07 67.9 11.5 167 178-356 181-378 (512)
200 TIGR01241 FtsH_fam ATP-depende 96.8 0.037 8E-07 64.6 16.8 183 176-383 52-260 (495)
201 PRK07261 topology modulation p 96.8 0.003 6.6E-08 61.9 6.7 64 209-295 2-66 (171)
202 PRK06921 hypothetical protein; 96.7 0.0064 1.4E-07 64.1 9.3 99 207-325 117-224 (266)
203 PRK06526 transposase; Provisio 96.7 0.0025 5.3E-08 66.6 6.2 100 208-326 99-201 (254)
204 PRK09183 transposase/IS protei 96.7 0.0058 1.3E-07 64.2 9.0 100 208-325 103-205 (259)
205 CHL00176 ftsH cell division pr 96.7 0.02 4.4E-07 67.8 14.3 179 178-381 182-386 (638)
206 KOG1859 Leucine-rich repeat pr 96.7 9E-05 2E-09 83.5 -4.9 122 544-672 165-290 (1096)
207 PF02562 PhoH: PhoH-like prote 96.7 0.0043 9.3E-08 61.7 7.3 133 182-327 3-157 (205)
208 KOG3665 ZYG-1-like serine/thre 96.7 0.00069 1.5E-08 80.6 1.9 128 565-694 121-259 (699)
209 PF07693 KAP_NTPase: KAP famil 96.7 0.071 1.5E-06 58.7 17.8 167 185-355 2-262 (325)
210 COG2812 DnaX DNA polymerase II 96.7 0.0062 1.3E-07 68.9 9.1 189 179-384 16-215 (515)
211 KOG2982 Uncharacterized conser 96.6 0.00093 2E-08 67.7 2.0 84 869-958 197-283 (418)
212 KOG0741 AAA+-type ATPase [Post 96.6 0.045 9.8E-07 60.3 14.7 161 205-393 536-716 (744)
213 CHL00095 clpC Clp protease ATP 96.6 0.0063 1.4E-07 75.3 9.6 136 179-325 509-661 (821)
214 PRK04132 replication factor C 96.6 0.037 7.9E-07 67.0 15.6 155 215-389 574-731 (846)
215 PF10443 RNA12: RNA12 protein; 96.6 0.062 1.4E-06 58.9 15.5 210 184-407 1-297 (431)
216 PRK07993 DNA polymerase III su 96.6 0.079 1.7E-06 57.8 16.5 184 186-388 9-203 (334)
217 PRK11034 clpA ATP-dependent Cl 96.6 0.016 3.6E-07 69.8 12.2 134 180-324 459-606 (758)
218 PRK12608 transcription termina 96.6 0.011 2.3E-07 64.1 9.6 101 187-295 119-229 (380)
219 PRK04296 thymidine kinase; Pro 96.5 0.0061 1.3E-07 60.9 7.0 113 208-327 3-117 (190)
220 PRK06835 DNA replication prote 96.5 0.0066 1.4E-07 65.7 7.7 102 208-325 184-288 (329)
221 PHA00729 NTP-binding motif con 96.5 0.017 3.7E-07 58.2 10.0 25 206-230 16-40 (226)
222 cd00561 CobA_CobO_BtuR ATP:cor 96.5 0.017 3.8E-07 54.9 9.4 116 208-326 3-138 (159)
223 KOG1644 U2-associated snRNP A' 96.5 0.0029 6.4E-08 60.9 4.1 97 597-696 48-151 (233)
224 TIGR02237 recomb_radB DNA repa 96.5 0.0093 2E-07 60.9 8.3 49 205-256 10-58 (209)
225 PRK06964 DNA polymerase III su 96.5 0.07 1.5E-06 58.1 15.2 93 285-389 131-225 (342)
226 cd01123 Rad51_DMC1_radA Rad51_ 96.4 0.018 3.8E-07 60.1 10.4 89 206-295 18-124 (235)
227 KOG2228 Origin recognition com 96.4 0.039 8.5E-07 57.6 12.0 174 178-356 23-219 (408)
228 PRK09361 radB DNA repair and r 96.4 0.015 3.2E-07 60.1 9.4 46 206-254 22-67 (225)
229 PRK05541 adenylylsulfate kinas 96.4 0.015 3.2E-07 57.5 9.0 36 206-243 6-41 (176)
230 COG0470 HolB ATPase involved i 96.4 0.016 3.4E-07 64.0 10.0 144 180-344 2-169 (325)
231 COG1484 DnaC DNA replication p 96.4 0.0087 1.9E-07 62.5 7.4 82 207-305 105-186 (254)
232 KOG2004 Mitochondrial ATP-depe 96.3 0.026 5.6E-07 64.6 11.1 107 177-296 409-515 (906)
233 PF07728 AAA_5: AAA domain (dy 96.3 0.0011 2.3E-08 62.8 0.2 88 210-310 2-89 (139)
234 cd01394 radB RadB. The archaea 96.3 0.021 4.5E-07 58.8 9.5 43 206-250 18-60 (218)
235 COG1875 NYN ribonuclease and A 96.2 0.014 3E-07 61.6 7.8 136 181-326 226-388 (436)
236 PF00560 LRR_1: Leucine Rich R 96.2 0.0026 5.6E-08 38.1 1.3 21 615-635 1-21 (22)
237 PRK11889 flhF flagellar biosyn 96.2 0.041 8.9E-07 59.9 11.2 89 206-297 240-331 (436)
238 smart00763 AAA_PrkA PrkA AAA d 96.2 0.0058 1.3E-07 65.9 4.8 51 179-230 51-101 (361)
239 PF08423 Rad51: Rad51; InterP 96.1 0.021 4.6E-07 59.8 8.8 88 207-295 38-142 (256)
240 PRK13695 putative NTPase; Prov 96.1 0.007 1.5E-07 59.7 4.9 21 210-230 3-23 (174)
241 PF13207 AAA_17: AAA domain; P 96.0 0.0043 9.4E-08 57.0 2.8 21 209-229 1-21 (121)
242 cd03214 ABC_Iron-Siderophores_ 96.0 0.054 1.2E-06 53.7 10.9 119 207-329 25-161 (180)
243 KOG0744 AAA+-type ATPase [Post 96.0 0.04 8.7E-07 57.0 9.7 81 207-297 177-261 (423)
244 COG5238 RNA1 Ran GTPase-activa 96.0 0.01 2.3E-07 59.6 5.4 223 562-841 26-283 (388)
245 TIGR02902 spore_lonB ATP-depen 96.0 0.029 6.2E-07 65.6 9.8 44 179-229 65-108 (531)
246 cd01393 recA_like RecA is a b 96.0 0.036 7.7E-07 57.4 9.6 88 206-296 18-124 (226)
247 cd01133 F1-ATPase_beta F1 ATP 95.9 0.02 4.4E-07 59.6 7.5 86 208-295 70-172 (274)
248 cd01120 RecA-like_NTPases RecA 95.9 0.031 6.8E-07 54.3 8.5 40 209-250 1-40 (165)
249 KOG1947 Leucine rich repeat pr 95.9 0.0014 3E-08 76.9 -1.7 41 898-938 401-443 (482)
250 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.9 0.06 1.3E-06 51.0 9.8 104 208-330 27-131 (144)
251 PRK06696 uridine kinase; Valid 95.9 0.01 2.2E-07 61.2 4.9 43 183-229 2-44 (223)
252 cd03247 ABCC_cytochrome_bd The 95.8 0.053 1.1E-06 53.6 9.7 117 208-330 29-161 (178)
253 cd03228 ABCC_MRP_Like The MRP 95.8 0.051 1.1E-06 53.4 9.4 118 207-331 28-160 (171)
254 PF00158 Sigma54_activat: Sigm 95.8 0.025 5.5E-07 55.0 7.0 131 181-326 1-144 (168)
255 PRK08699 DNA polymerase III su 95.8 0.065 1.4E-06 58.2 10.7 71 285-355 112-184 (325)
256 TIGR02238 recomb_DMC1 meiotic 95.7 0.046 1E-06 58.9 9.5 58 206-264 95-156 (313)
257 COG2884 FtsE Predicted ATPase 95.7 0.063 1.4E-06 51.5 9.0 123 207-333 28-204 (223)
258 KOG1969 DNA replication checkp 95.7 0.034 7.4E-07 63.8 8.5 76 204-297 323-398 (877)
259 cd03222 ABC_RNaseL_inhibitor T 95.7 0.065 1.4E-06 52.6 9.6 103 207-330 25-136 (177)
260 cd03223 ABCD_peroxisomal_ALDP 95.7 0.094 2E-06 51.1 10.7 117 207-330 27-152 (166)
261 KOG1051 Chaperone HSP104 and r 95.7 0.077 1.7E-06 63.9 11.8 123 179-312 562-686 (898)
262 PF00448 SRP54: SRP54-type pro 95.7 0.037 8E-07 55.4 7.9 86 208-295 2-92 (196)
263 TIGR01243 CDC48 AAA family ATP 95.7 0.17 3.7E-06 62.2 15.2 181 178-383 452-657 (733)
264 KOG2035 Replication factor C, 95.6 0.082 1.8E-06 53.7 9.9 210 180-412 14-261 (351)
265 TIGR03499 FlhF flagellar biosy 95.6 0.04 8.7E-07 58.8 8.5 88 206-295 193-281 (282)
266 COG4608 AppF ABC-type oligopep 95.6 0.083 1.8E-06 54.2 10.1 125 207-334 39-178 (268)
267 COG0542 clpA ATP-binding subun 95.6 0.19 4.1E-06 59.8 14.3 155 179-355 170-345 (786)
268 cd03216 ABC_Carb_Monos_I This 95.6 0.055 1.2E-06 52.6 8.6 116 208-330 27-146 (163)
269 cd01131 PilT Pilus retraction 95.5 0.025 5.5E-07 56.9 6.2 111 208-330 2-113 (198)
270 cd03238 ABC_UvrA The excision 95.5 0.069 1.5E-06 52.4 8.9 114 207-330 21-153 (176)
271 PLN03186 DNA repair protein RA 95.5 0.063 1.4E-06 58.5 9.5 58 206-264 122-183 (342)
272 COG0466 Lon ATP-dependent Lon 95.5 0.072 1.6E-06 61.4 10.2 167 177-356 321-508 (782)
273 KOG1644 U2-associated snRNP A' 95.5 0.019 4.1E-07 55.5 4.7 93 775-881 56-150 (233)
274 COG1136 SalX ABC-type antimicr 95.5 0.13 2.8E-06 51.9 10.8 61 273-333 147-210 (226)
275 TIGR01243 CDC48 AAA family ATP 95.5 0.1 2.3E-06 64.0 12.4 181 178-383 177-381 (733)
276 cd03230 ABC_DR_subfamily_A Thi 95.4 0.11 2.3E-06 51.2 10.2 118 207-330 26-159 (173)
277 PF13671 AAA_33: AAA domain; P 95.4 0.027 5.9E-07 53.4 5.8 21 209-229 1-21 (143)
278 PLN03187 meiotic recombination 95.4 0.08 1.7E-06 57.6 10.0 58 206-264 125-186 (344)
279 TIGR02239 recomb_RAD51 DNA rep 95.4 0.073 1.6E-06 57.6 9.7 58 205-263 94-155 (316)
280 PRK12723 flagellar biosynthesi 95.4 0.17 3.8E-06 56.0 12.6 89 206-297 173-265 (388)
281 PF14532 Sigma54_activ_2: Sigm 95.4 0.012 2.5E-07 55.5 3.0 108 182-326 1-110 (138)
282 cd00983 recA RecA is a bacter 95.3 0.043 9.2E-07 58.9 7.4 85 205-296 53-143 (325)
283 TIGR02012 tigrfam_recA protein 95.3 0.042 9.2E-07 58.9 7.3 85 205-296 53-143 (321)
284 COG0572 Udk Uridine kinase [Nu 95.3 0.035 7.7E-07 55.2 6.1 77 206-287 7-85 (218)
285 CHL00195 ycf46 Ycf46; Provisio 95.3 0.17 3.7E-06 58.0 12.4 160 179-358 228-407 (489)
286 PRK15455 PrkA family serine pr 95.2 0.013 2.9E-07 66.4 3.4 49 180-229 77-125 (644)
287 PF13604 AAA_30: AAA domain; P 95.2 0.055 1.2E-06 54.3 7.5 106 208-325 19-130 (196)
288 PRK09354 recA recombinase A; P 95.2 0.056 1.2E-06 58.5 7.8 85 205-296 58-148 (349)
289 PTZ00035 Rad51 protein; Provis 95.2 0.13 2.9E-06 56.2 10.7 58 205-263 116-177 (337)
290 COG1222 RPT1 ATP-dependent 26S 95.2 0.37 7.9E-06 51.2 13.2 192 177-394 149-372 (406)
291 PRK14722 flhF flagellar biosyn 95.1 0.059 1.3E-06 59.1 7.8 88 207-296 137-225 (374)
292 cd03246 ABCC_Protease_Secretio 95.1 0.11 2.3E-06 51.2 9.0 119 208-330 29-160 (173)
293 KOG2123 Uncharacterized conser 95.1 0.0026 5.6E-08 64.0 -2.4 80 611-692 38-124 (388)
294 PF00485 PRK: Phosphoribulokin 95.1 0.069 1.5E-06 53.7 7.8 79 209-290 1-87 (194)
295 PRK04301 radA DNA repair and r 95.1 0.094 2E-06 57.2 9.4 57 206-263 101-161 (317)
296 PRK00771 signal recognition pa 95.1 0.19 4.1E-06 56.7 11.9 57 206-264 94-151 (437)
297 KOG2739 Leucine-rich acidic nu 95.1 0.013 2.7E-07 59.2 2.2 37 635-671 63-101 (260)
298 PRK08233 hypothetical protein; 95.1 0.064 1.4E-06 53.3 7.4 24 207-230 3-26 (182)
299 PRK05703 flhF flagellar biosyn 95.1 0.15 3.2E-06 57.7 11.0 88 207-296 221-309 (424)
300 KOG2123 Uncharacterized conser 95.1 0.0023 5E-08 64.4 -3.0 99 564-667 17-123 (388)
301 TIGR00959 ffh signal recogniti 95.1 0.13 2.9E-06 57.7 10.5 24 206-229 98-121 (428)
302 COG1618 Predicted nucleotide k 95.0 0.02 4.3E-07 53.2 3.3 23 208-230 6-28 (179)
303 TIGR00708 cobA cob(I)alamin ad 95.0 0.16 3.5E-06 49.0 9.6 116 207-326 5-140 (173)
304 cd03115 SRP The signal recogni 95.0 0.079 1.7E-06 52.1 7.6 21 209-229 2-22 (173)
305 cd02025 PanK Pantothenate kina 94.9 0.079 1.7E-06 54.2 7.7 73 209-284 1-76 (220)
306 PF01583 APS_kinase: Adenylyls 94.9 0.014 3E-07 55.3 2.0 35 207-243 2-36 (156)
307 PRK07132 DNA polymerase III su 94.9 1 2.3E-05 48.2 16.3 134 206-355 17-161 (299)
308 PRK10867 signal recognition pa 94.9 0.15 3.2E-06 57.4 10.4 24 206-229 99-122 (433)
309 PRK06067 flagellar accessory p 94.9 0.097 2.1E-06 54.4 8.5 87 205-296 23-130 (234)
310 COG1126 GlnQ ABC-type polar am 94.9 0.31 6.7E-06 48.1 11.0 122 207-331 28-201 (240)
311 COG0396 sufC Cysteine desulfur 94.9 0.22 4.9E-06 49.5 10.2 61 276-338 152-216 (251)
312 PF05659 RPW8: Arabidopsis bro 94.8 0.37 7.9E-06 45.3 11.1 83 2-84 3-86 (147)
313 COG0468 RecA RecA/RadA recombi 94.8 0.14 3E-06 53.7 9.2 89 205-296 58-151 (279)
314 cd00544 CobU Adenosylcobinamid 94.8 0.043 9.2E-07 53.4 5.1 78 210-295 2-82 (169)
315 PRK05439 pantothenate kinase; 94.8 0.14 3E-06 54.8 9.3 80 205-287 84-166 (311)
316 PRK12724 flagellar biosynthesi 94.7 0.07 1.5E-06 58.9 7.1 23 207-229 223-245 (432)
317 PF07724 AAA_2: AAA domain (Cd 94.7 0.016 3.4E-07 56.6 1.9 42 207-250 3-45 (171)
318 PF00560 LRR_1: Leucine Rich R 94.7 0.017 3.8E-07 34.5 1.3 22 638-660 1-22 (22)
319 cd03215 ABC_Carb_Monos_II This 94.7 0.21 4.6E-06 49.5 9.9 23 208-230 27-49 (182)
320 PRK05800 cobU adenosylcobinami 94.7 0.028 6E-07 54.8 3.4 80 209-295 3-85 (170)
321 PRK08533 flagellar accessory p 94.7 0.18 4E-06 52.0 9.7 48 207-258 24-71 (230)
322 PRK00889 adenylylsulfate kinas 94.6 0.21 4.5E-06 49.3 9.7 24 207-230 4-27 (175)
323 PRK14974 cell division protein 94.6 0.23 5E-06 53.9 10.7 89 206-297 139-233 (336)
324 PTZ00301 uridine kinase; Provi 94.6 0.047 1E-06 55.1 5.0 23 207-229 3-25 (210)
325 TIGR00554 panK_bact pantothena 94.6 0.13 2.9E-06 54.5 8.5 79 205-286 60-141 (290)
326 TIGR01817 nifA Nif-specific re 94.6 0.18 4E-06 59.5 10.7 135 177-325 194-340 (534)
327 PRK07667 uridine kinase; Provi 94.6 0.041 8.9E-07 55.2 4.5 37 188-229 3-39 (193)
328 PRK15429 formate hydrogenlyase 94.6 0.11 2.4E-06 63.2 9.1 135 179-326 376-521 (686)
329 cd03369 ABCC_NFT1 Domain 2 of 94.5 0.39 8.5E-06 48.8 11.7 53 278-330 135-188 (207)
330 cd01125 repA Hexameric Replica 94.5 0.2 4.3E-06 52.3 9.7 21 209-229 3-23 (239)
331 PRK13531 regulatory ATPase Rav 94.5 0.048 1E-06 61.3 5.2 155 180-355 21-193 (498)
332 cd00267 ABC_ATPase ABC (ATP-bi 94.5 0.095 2.1E-06 50.6 6.8 116 208-331 26-145 (157)
333 PRK09270 nucleoside triphospha 94.5 0.15 3.3E-06 52.7 8.7 25 205-229 31-55 (229)
334 PRK05986 cob(I)alamin adenolsy 94.5 0.2 4.4E-06 49.1 8.8 118 207-326 22-158 (191)
335 PRK11608 pspF phage shock prot 94.4 0.091 2E-06 57.5 7.2 134 180-326 7-151 (326)
336 TIGR02236 recomb_radA DNA repa 94.4 0.17 3.7E-06 55.2 9.3 57 206-263 94-154 (310)
337 COG1102 Cmk Cytidylate kinase 94.4 0.074 1.6E-06 49.6 5.3 44 209-265 2-45 (179)
338 cd03229 ABC_Class3 This class 94.4 0.12 2.6E-06 51.1 7.4 24 207-230 26-49 (178)
339 cd02027 APSK Adenosine 5'-phos 94.4 0.096 2.1E-06 50.0 6.4 22 209-230 1-22 (149)
340 PHA02244 ATPase-like protein 94.3 0.24 5.1E-06 53.8 9.8 21 210-230 122-142 (383)
341 PRK12727 flagellar biosynthesi 94.3 0.1 2.3E-06 59.2 7.4 89 206-296 349-438 (559)
342 TIGR00064 ftsY signal recognit 94.3 0.2 4.4E-06 53.0 9.3 88 206-296 71-164 (272)
343 PF13238 AAA_18: AAA domain; P 94.3 0.028 6.2E-07 52.0 2.6 21 210-230 1-21 (129)
344 KOG0735 AAA+-type ATPase [Post 94.3 0.11 2.3E-06 59.7 7.3 72 207-296 431-504 (952)
345 cd01122 GP4d_helicase GP4d_hel 94.3 0.32 6.9E-06 51.9 10.8 54 207-263 30-83 (271)
346 cd03281 ABC_MSH5_euk MutS5 hom 94.2 0.063 1.4E-06 54.7 5.0 23 207-229 29-51 (213)
347 TIGR00235 udk uridine kinase. 94.2 0.038 8.2E-07 56.2 3.3 26 205-230 4-29 (207)
348 PF06309 Torsin: Torsin; Inte 94.2 0.069 1.5E-06 48.1 4.5 51 180-230 26-76 (127)
349 PRK13948 shikimate kinase; Pro 94.1 0.23 4.9E-06 49.0 8.5 25 206-230 9-33 (182)
350 cd03235 ABC_Metallic_Cations A 94.1 0.39 8.4E-06 49.1 10.8 24 207-230 25-48 (213)
351 PRK13539 cytochrome c biogenes 94.1 0.27 5.8E-06 50.0 9.5 62 279-343 138-201 (207)
352 COG1121 ZnuC ABC-type Mn/Zn tr 94.1 0.31 6.7E-06 50.1 9.6 123 208-330 31-203 (254)
353 COG4618 ArpD ABC-type protease 94.1 0.49 1.1E-05 52.6 11.5 22 208-229 363-384 (580)
354 PRK03846 adenylylsulfate kinas 94.1 0.12 2.6E-06 52.2 6.7 24 206-229 23-46 (198)
355 cd02019 NK Nucleoside/nucleoti 94.1 0.033 7.1E-07 45.0 2.1 22 209-230 1-22 (69)
356 PF00006 ATP-synt_ab: ATP synt 94.0 0.12 2.6E-06 52.3 6.5 82 208-295 16-114 (215)
357 TIGR01425 SRP54_euk signal rec 94.0 0.85 1.8E-05 51.1 13.7 24 206-229 99-122 (429)
358 cd03244 ABCC_MRP_domain2 Domai 94.0 0.44 9.5E-06 49.0 11.0 23 208-230 31-53 (221)
359 PRK05480 uridine/cytidine kina 94.0 0.04 8.6E-07 56.2 3.1 25 206-230 5-29 (209)
360 cd03245 ABCC_bacteriocin_expor 94.0 0.46 9.9E-06 48.9 11.0 24 207-230 30-53 (220)
361 TIGR00390 hslU ATP-dependent p 94.0 0.12 2.5E-06 57.0 6.7 82 179-262 12-104 (441)
362 PRK12726 flagellar biosynthesi 94.0 0.22 4.9E-06 54.1 8.8 90 206-297 205-296 (407)
363 cd03233 ABC_PDR_domain1 The pl 94.0 0.42 9E-06 48.4 10.4 24 207-230 33-56 (202)
364 KOG2739 Leucine-rich acidic nu 93.9 0.017 3.7E-07 58.3 0.3 63 635-699 41-105 (260)
365 TIGR03877 thermo_KaiC_1 KaiC d 93.9 0.34 7.4E-06 50.4 10.0 50 205-258 19-68 (237)
366 cd03251 ABCC_MsbA MsbA is an e 93.9 0.6 1.3E-05 48.5 11.8 53 279-331 149-202 (234)
367 cd03217 ABC_FeS_Assembly ABC-t 93.9 0.22 4.9E-06 50.2 8.3 119 207-330 26-168 (200)
368 PTZ00088 adenylate kinase 1; P 93.9 0.16 3.5E-06 52.1 7.2 21 210-230 9-29 (229)
369 TIGR03878 thermo_KaiC_2 KaiC d 93.8 0.2 4.4E-06 52.7 8.2 40 206-247 35-74 (259)
370 cd03254 ABCC_Glucan_exporter_l 93.8 0.49 1.1E-05 49.0 11.0 54 278-331 149-203 (229)
371 PF13504 LRR_7: Leucine rich r 93.8 0.041 8.9E-07 30.5 1.5 16 615-630 2-17 (17)
372 TIGR02974 phageshock_pspF psp 93.8 0.17 3.8E-06 55.2 7.7 45 181-230 1-45 (329)
373 PF12775 AAA_7: P-loop contain 93.8 0.062 1.3E-06 56.9 4.0 85 208-304 34-118 (272)
374 cd03253 ABCC_ATM1_transporter 93.8 0.47 1E-05 49.4 10.7 54 278-331 147-201 (236)
375 KOG0924 mRNA splicing factor A 93.7 0.44 9.6E-06 54.3 10.6 130 207-342 371-529 (1042)
376 cd03213 ABCG_EPDR ABCG transpo 93.7 0.4 8.6E-06 48.1 9.7 118 207-327 35-172 (194)
377 cd03282 ABC_MSH4_euk MutS4 hom 93.7 0.096 2.1E-06 52.8 5.1 119 207-334 29-159 (204)
378 PRK05022 anaerobic nitric oxid 93.7 0.18 3.9E-06 59.0 8.1 136 178-326 186-332 (509)
379 COG0464 SpoVK ATPases of the A 93.6 0.59 1.3E-05 54.7 12.4 159 179-357 242-424 (494)
380 cd03283 ABC_MutS-like MutS-lik 93.6 0.32 6.9E-06 48.9 8.8 22 208-229 26-47 (199)
381 TIGR02858 spore_III_AA stage I 93.6 0.31 6.7E-06 51.3 8.9 112 206-330 110-233 (270)
382 PF12061 DUF3542: Protein of u 93.6 0.091 2E-06 54.0 4.7 76 9-84 297-373 (402)
383 PRK06762 hypothetical protein; 93.6 0.05 1.1E-06 53.2 2.8 23 208-230 3-25 (166)
384 cd01121 Sms Sms (bacterial rad 93.6 0.31 6.8E-06 53.9 9.3 82 206-295 81-167 (372)
385 KOG0730 AAA+-type ATPase [Post 93.6 0.78 1.7E-05 52.7 12.3 58 178-237 433-496 (693)
386 PRK10733 hflB ATP-dependent me 93.6 0.75 1.6E-05 55.3 13.2 159 179-357 152-336 (644)
387 PRK14721 flhF flagellar biosyn 93.6 0.57 1.2E-05 52.4 11.3 88 206-295 190-278 (420)
388 PRK06002 fliI flagellum-specif 93.5 0.28 6E-06 55.0 8.8 86 207-295 165-263 (450)
389 cd03252 ABCC_Hemolysin The ABC 93.5 0.77 1.7E-05 47.8 11.9 52 279-330 149-201 (237)
390 PF08433 KTI12: Chromatin asso 93.5 0.093 2E-06 55.2 4.8 23 208-230 2-24 (270)
391 cd02028 UMPK_like Uridine mono 93.5 0.11 2.4E-06 51.2 5.2 22 209-230 1-22 (179)
392 PRK06731 flhF flagellar biosyn 93.5 0.39 8.5E-06 50.5 9.4 89 207-297 75-165 (270)
393 PRK06217 hypothetical protein; 93.5 0.22 4.7E-06 49.5 7.3 22 209-230 3-24 (183)
394 cd03240 ABC_Rad50 The catalyti 93.5 0.3 6.5E-06 49.4 8.3 61 278-340 131-195 (204)
395 PRK10923 glnG nitrogen regulat 93.5 0.57 1.2E-05 54.6 11.9 47 179-230 138-184 (469)
396 PRK14723 flhF flagellar biosyn 93.5 0.27 5.9E-06 58.8 9.0 88 207-296 185-273 (767)
397 PF03215 Rad17: Rad17 cell cyc 93.4 0.35 7.6E-06 55.9 9.7 60 179-244 19-78 (519)
398 PRK13543 cytochrome c biogenes 93.4 0.64 1.4E-05 47.5 10.8 23 208-230 38-60 (214)
399 PRK06547 hypothetical protein; 93.4 0.06 1.3E-06 52.6 3.0 25 206-230 14-38 (172)
400 PF07726 AAA_3: ATPase family 93.4 0.075 1.6E-06 48.0 3.3 27 210-238 2-28 (131)
401 cd03231 ABC_CcmA_heme_exporter 93.3 0.58 1.3E-05 47.3 10.2 24 207-230 26-49 (201)
402 PRK03839 putative kinase; Prov 93.3 0.053 1.2E-06 53.8 2.6 22 209-230 2-23 (180)
403 cd03237 ABC_RNaseL_inhibitor_d 93.3 0.54 1.2E-05 49.1 10.2 125 207-331 25-181 (246)
404 KOG0733 Nuclear AAA ATPase (VC 93.3 0.3 6.4E-06 55.3 8.3 100 178-297 189-293 (802)
405 COG1428 Deoxynucleoside kinase 93.2 0.053 1.1E-06 53.3 2.3 24 207-230 4-27 (216)
406 PLN00020 ribulose bisphosphate 93.2 0.15 3.3E-06 54.8 5.8 26 205-230 146-171 (413)
407 PTZ00494 tuzin-like protein; P 93.2 1.7 3.6E-05 47.8 13.4 169 174-355 366-543 (664)
408 TIGR03575 selen_PSTK_euk L-ser 93.2 0.2 4.4E-06 54.2 6.9 21 210-230 2-22 (340)
409 PRK05201 hslU ATP-dependent pr 93.1 0.2 4.4E-06 55.2 6.7 82 179-262 15-107 (443)
410 COG1066 Sms Predicted ATP-depe 93.1 0.21 4.6E-06 54.0 6.6 82 207-297 93-179 (456)
411 COG1223 Predicted ATPase (AAA+ 93.1 1.7 3.7E-05 44.0 12.3 161 177-358 119-299 (368)
412 PRK13647 cbiO cobalt transport 93.1 0.63 1.4E-05 49.6 10.4 23 208-230 32-54 (274)
413 COG0563 Adk Adenylate kinase a 93.1 0.14 2.9E-06 50.3 4.9 22 209-230 2-23 (178)
414 PRK12597 F0F1 ATP synthase sub 93.0 0.19 4.2E-06 56.7 6.6 87 208-295 144-246 (461)
415 PRK00625 shikimate kinase; Pro 93.0 0.062 1.3E-06 52.5 2.4 22 209-230 2-23 (173)
416 PRK04040 adenylate kinase; Pro 93.0 0.073 1.6E-06 52.9 2.9 22 208-229 3-24 (188)
417 PRK09544 znuC high-affinity zi 93.0 0.57 1.2E-05 49.2 9.8 24 207-230 30-53 (251)
418 PRK09580 sufC cysteine desulfu 93.0 0.72 1.6E-05 48.4 10.6 24 207-230 27-50 (248)
419 TIGR00150 HI0065_YjeE ATPase, 92.9 0.13 2.8E-06 47.4 4.2 40 186-230 6-45 (133)
420 cd03232 ABC_PDR_domain2 The pl 92.9 0.41 8.8E-06 48.0 8.3 23 207-229 33-55 (192)
421 PF00910 RNA_helicase: RNA hel 92.9 0.049 1.1E-06 48.6 1.5 21 210-230 1-21 (107)
422 cd03250 ABCC_MRP_domain1 Domai 92.9 1.1 2.4E-05 45.3 11.6 24 207-230 31-54 (204)
423 TIGR03498 FliI_clade3 flagella 92.8 0.38 8.1E-06 53.9 8.5 85 207-295 140-239 (418)
424 COG2842 Uncharacterized ATPase 92.8 2.4 5.2E-05 44.3 13.5 98 208-313 95-192 (297)
425 TIGR01360 aden_kin_iso1 adenyl 92.8 0.074 1.6E-06 53.2 2.8 24 206-229 2-25 (188)
426 KOG1947 Leucine rich repeat pr 92.8 0.011 2.4E-07 69.2 -3.8 170 741-938 184-367 (482)
427 TIGR01069 mutS2 MutS2 family p 92.8 0.086 1.9E-06 64.2 3.7 23 207-229 322-344 (771)
428 TIGR03522 GldA_ABC_ATP gliding 92.8 0.77 1.7E-05 49.7 10.8 24 207-230 28-51 (301)
429 PRK08972 fliI flagellum-specif 92.8 0.42 9.1E-06 53.3 8.7 84 208-295 163-261 (444)
430 cd01124 KaiC KaiC is a circadi 92.8 0.27 5.9E-06 49.0 6.8 44 210-257 2-45 (187)
431 PF03205 MobB: Molybdopterin g 92.8 0.14 3E-06 48.1 4.3 39 208-247 1-39 (140)
432 COG4088 Predicted nucleotide k 92.7 0.23 5E-06 48.3 5.7 22 208-229 2-23 (261)
433 PF08298 AAA_PrkA: PrkA AAA do 92.7 0.13 2.8E-06 55.1 4.5 51 178-229 60-110 (358)
434 PRK06995 flhF flagellar biosyn 92.7 0.35 7.5E-06 55.0 8.2 88 207-296 256-344 (484)
435 PRK13545 tagH teichoic acids e 92.7 1 2.2E-05 51.7 11.7 23 208-230 51-73 (549)
436 TIGR03881 KaiC_arch_4 KaiC dom 92.7 0.41 8.9E-06 49.5 8.2 40 206-247 19-58 (229)
437 PRK08927 fliI flagellum-specif 92.7 0.45 9.7E-06 53.4 8.7 85 207-295 158-257 (442)
438 PRK09280 F0F1 ATP synthase sub 92.6 0.37 8.1E-06 54.2 8.1 87 208-295 145-247 (463)
439 TIGR03771 anch_rpt_ABC anchore 92.6 1 2.2E-05 46.3 11.0 24 207-230 6-29 (223)
440 PF13481 AAA_25: AAA domain; P 92.6 0.47 1E-05 47.6 8.4 40 209-248 34-81 (193)
441 COG2274 SunT ABC-type bacterio 92.6 0.92 2E-05 54.6 11.8 53 278-330 619-673 (709)
442 COG1135 AbcC ABC-type metal io 92.5 0.7 1.5E-05 48.3 9.2 55 278-332 151-208 (339)
443 PF03969 AFG1_ATPase: AFG1-lik 92.5 0.27 5.8E-06 54.2 6.8 101 206-324 61-166 (362)
444 TIGR01420 pilT_fam pilus retra 92.5 0.22 4.9E-06 54.8 6.3 112 207-329 122-233 (343)
445 PRK08760 replicative DNA helic 92.5 4.2 9.1E-05 46.9 16.8 54 206-262 228-281 (476)
446 cd01136 ATPase_flagellum-secre 92.5 0.6 1.3E-05 50.4 9.2 84 208-295 70-168 (326)
447 cd02023 UMPK Uridine monophosp 92.5 0.07 1.5E-06 53.9 2.1 21 209-229 1-21 (198)
448 cd02024 NRK1 Nicotinamide ribo 92.5 0.071 1.5E-06 52.6 2.0 22 209-230 1-22 (187)
449 TIGR02322 phosphon_PhnN phosph 92.5 0.085 1.8E-06 52.2 2.6 23 208-230 2-24 (179)
450 smart00534 MUTSac ATPase domai 92.4 0.065 1.4E-06 53.4 1.7 21 209-229 1-21 (185)
451 PF00154 RecA: recA bacterial 92.4 0.23 5.1E-06 53.2 5.9 84 206-296 52-141 (322)
452 PRK13537 nodulation ABC transp 92.4 0.72 1.6E-05 50.0 9.9 23 208-230 34-56 (306)
453 cd03236 ABC_RNaseL_inhibitor_d 92.4 1 2.3E-05 47.2 10.8 24 207-230 26-49 (255)
454 KOG0734 AAA+-type ATPase conta 92.4 0.39 8.5E-06 53.4 7.6 53 178-230 303-360 (752)
455 KOG2170 ATPase of the AAA+ sup 92.4 0.33 7.1E-06 50.2 6.5 116 179-311 82-203 (344)
456 COG0003 ArsA Predicted ATPase 92.3 0.18 3.9E-06 54.2 5.1 49 207-257 2-50 (322)
457 cd04159 Arl10_like Arl10-like 92.3 0.54 1.2E-05 45.0 8.2 21 210-230 2-22 (159)
458 PF13479 AAA_24: AAA domain 92.3 0.35 7.5E-06 49.3 7.0 20 208-227 4-23 (213)
459 cd01135 V_A-ATPase_B V/A-type 92.3 0.56 1.2E-05 48.9 8.4 88 208-295 70-175 (276)
460 PRK06793 fliI flagellum-specif 92.3 0.37 8.1E-06 53.9 7.6 87 207-296 156-256 (432)
461 PRK05973 replicative DNA helic 92.3 0.61 1.3E-05 47.9 8.6 49 206-258 63-111 (237)
462 COG2019 AdkA Archaeal adenylat 92.3 0.11 2.3E-06 48.8 2.7 23 207-229 4-26 (189)
463 PRK04328 hypothetical protein; 92.2 0.38 8.3E-06 50.4 7.3 40 206-247 22-61 (249)
464 cd03248 ABCC_TAP TAP, the Tran 92.2 1.3 2.9E-05 45.6 11.3 24 207-230 40-63 (226)
465 PRK07594 type III secretion sy 92.2 0.63 1.4E-05 52.2 9.2 85 207-295 155-254 (433)
466 TIGR00455 apsK adenylylsulfate 92.2 0.72 1.6E-05 45.8 8.9 25 206-230 17-41 (184)
467 TIGR03574 selen_PSTK L-seryl-t 92.2 0.28 6.1E-06 51.5 6.3 21 210-230 2-22 (249)
468 COG1124 DppF ABC-type dipeptid 92.1 0.17 3.6E-06 51.0 4.1 22 208-229 34-55 (252)
469 KOG0473 Leucine-rich repeat pr 92.1 0.0091 2E-07 58.6 -4.5 83 589-672 39-122 (326)
470 TIGR01359 UMP_CMP_kin_fam UMP- 92.1 0.082 1.8E-06 52.6 2.0 21 209-229 1-21 (183)
471 PRK15115 response regulator Gl 92.1 1 2.3E-05 52.0 11.5 46 180-230 135-180 (444)
472 PRK15453 phosphoribulokinase; 92.1 0.64 1.4E-05 48.5 8.5 78 206-285 4-89 (290)
473 PRK10875 recD exonuclease V su 92.1 0.46 1E-05 56.2 8.5 118 207-327 167-303 (615)
474 PRK00131 aroK shikimate kinase 92.1 0.097 2.1E-06 51.5 2.5 24 207-230 4-27 (175)
475 PRK10751 molybdopterin-guanine 92.1 0.12 2.7E-06 50.0 3.1 25 206-230 5-29 (173)
476 PRK08149 ATP synthase SpaL; Va 92.0 0.5 1.1E-05 52.9 8.2 85 207-295 151-250 (428)
477 PRK05917 DNA polymerase III su 92.0 1.5 3.3E-05 46.4 11.3 59 285-343 94-154 (290)
478 KOG1532 GTPase XAB1, interacts 92.0 0.12 2.5E-06 52.4 2.8 27 205-231 17-43 (366)
479 PF00025 Arf: ADP-ribosylation 92.0 0.68 1.5E-05 45.6 8.3 25 206-230 13-37 (175)
480 PRK10416 signal recognition pa 92.0 1.2 2.7E-05 48.2 10.9 25 206-230 113-137 (318)
481 cd00227 CPT Chloramphenicol (C 91.9 0.1 2.2E-06 51.5 2.4 23 208-230 3-25 (175)
482 TIGR00764 lon_rel lon-related 91.9 0.39 8.6E-06 57.0 7.8 74 179-264 18-92 (608)
483 cd02021 GntK Gluconate kinase 91.9 0.096 2.1E-06 50.1 2.2 22 209-230 1-22 (150)
484 TIGR03263 guanyl_kin guanylate 91.9 0.11 2.4E-06 51.5 2.7 22 208-229 2-23 (180)
485 PF01078 Mg_chelatase: Magnesi 91.9 0.25 5.4E-06 49.1 5.1 42 179-229 3-44 (206)
486 PF03308 ArgK: ArgK protein; 91.9 0.16 3.6E-06 51.8 3.9 66 187-257 14-79 (266)
487 PRK12678 transcription termina 91.9 0.23 5E-06 56.5 5.4 84 208-295 417-512 (672)
488 KOG4252 GTP-binding protein [S 91.9 0.56 1.2E-05 44.1 6.9 35 209-244 22-56 (246)
489 COG0529 CysC Adenylylsulfate k 91.9 0.13 2.9E-06 48.7 2.9 25 205-229 21-45 (197)
490 cd03289 ABCC_CFTR2 The CFTR su 91.9 1.7 3.6E-05 46.3 11.7 23 208-230 31-53 (275)
491 COG1131 CcmA ABC-type multidru 91.9 1.3 2.8E-05 47.7 10.9 24 207-230 31-54 (293)
492 PRK15064 ABC transporter ATP-b 91.8 1.4 3.1E-05 52.0 12.3 23 208-230 28-50 (530)
493 KOG0733 Nuclear AAA ATPase (VC 91.8 1.7 3.8E-05 49.4 11.8 155 207-383 545-718 (802)
494 COG4133 CcmA ABC-type transpor 91.8 1.8 3.9E-05 41.9 10.3 22 208-229 29-50 (209)
495 PRK05922 type III secretion sy 91.8 0.59 1.3E-05 52.4 8.4 84 208-295 158-256 (434)
496 COG5635 Predicted NTPase (NACH 91.7 0.23 5E-06 61.7 5.8 138 207-349 222-371 (824)
497 PTZ00185 ATPase alpha subunit; 91.7 0.87 1.9E-05 51.5 9.5 87 208-296 190-299 (574)
498 PRK09519 recA DNA recombinatio 91.7 0.4 8.6E-06 57.6 7.3 85 205-296 58-148 (790)
499 PRK14269 phosphate ABC transpo 91.7 1.8 3.8E-05 45.4 11.6 23 208-230 29-51 (246)
500 COG1703 ArgK Putative periplas 91.7 0.16 3.4E-06 52.7 3.4 67 189-260 38-104 (323)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-90 Score=823.35 Aligned_cols=646 Identities=26% Similarity=0.417 Sum_probs=524.3
Q ss_pred HHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHHhhhhchhhHHHHHHHHHHHhhh
Q 001998 13 LISVAAKEATEEVRLVVGVGQQVEKLKRNFRAIQAVLHDAEHRQVREEGVRLWLDQLKDTSYDMEDVLDEWITARLKRQT 92 (984)
Q Consensus 13 l~~~l~~~~~~~~~~~~~v~~~~~~l~~~l~~i~~~l~~a~~~~~~~~~~~~wl~~lr~~ayd~eD~ld~~~~~~~~~~~ 92 (984)
.++++.+++.+++....++++.+..|+++|..++++++||+.++.....+..|.+.+++++|++||.++.|.......+.
T Consensus 8 ~~~~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~ 87 (889)
T KOG4658|consen 8 GVEKLDQLLNRESECLDGKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKA 87 (889)
T ss_pred ehhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778888899999999999999999999999999999999989999999999999999999999999988765543
Q ss_pred ccCCCCCcCCccchhcccccccccccCCCccccccchhhHHHHHHHHHHHHHHHHHHHHhhcccccccc--CC---cccC
Q 001998 93 EGVDHDNALVPDKKKKKKKKKVCSFFPASSCFGFKQVFLRRDIALKIKAINQTLDDIAEQKDMFNFNVI--NS---REKS 167 (984)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~i~~~~~~~~~~~~--~~---~~~~ 167 (984)
.+.-. ++ ....+.+ |++ .++++.+..+..+..++..+.+....++.... .. ....
T Consensus 88 ~~~l~----------~~--~~~~~~~----c~~----~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~ 147 (889)
T KOG4658|consen 88 NDLLS----------TR--SVERQRL----CLC----GFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPR 147 (889)
T ss_pred hHHhh----------hh--HHHHHHH----hhh----hhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccch
Confidence 22200 00 0001111 111 45566677777777777777777777664432 11 1111
Q ss_pred CCCcccccccCCcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcc-cccCCCeEEEEEec
Q 001998 168 EGMQSTSLIDVSEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDND-VINNFEIRVWVCVS 246 (984)
Q Consensus 168 ~~~~~~~~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~~s 246 (984)
..+++.+..+..+ ||.++.++++++.|..++ ..+++|+||||+||||||++++|+.. ++.+||.++||+||
T Consensus 148 ~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d~-------~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VS 219 (889)
T KOG4658|consen 148 EKVETRPIQSESD-VGLETMLEKLWNRLMEDD-------VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVS 219 (889)
T ss_pred hhcccCCCCcccc-ccHHHHHHHHHHHhccCC-------CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEc
Confidence 1233333344444 999999999999998654 38999999999999999999999987 99999999999999
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCc--ccHHHHHHHHHHHhCCCceEEEEEcCCCCCcCChhhHHHhhcCCCCCcEEEEEcc
Q 001998 247 DPFDEFSVAKAIIEELEGSATDL--HELNSLLRRIGANIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILLTTR 324 (984)
Q Consensus 247 ~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr 324 (984)
+.|+...++++|++.++...... ...++++..+.+.|++|||+|||||||++ .+|+.+..++|....||||++|||
T Consensus 220 k~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~--~dw~~I~~~~p~~~~g~KvvlTTR 297 (889)
T KOG4658|consen 220 KEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEE--VDWDKIGVPFPSRENGSKVVLTTR 297 (889)
T ss_pred ccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEeccccc--ccHHhcCCCCCCccCCeEEEEEec
Confidence 99999999999999998744332 33478999999999999999999999986 469999999999999999999999
Q ss_pred chHHHhh-cCCCCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHHHHhhccCCCHHHHH
Q 001998 325 KETVARM-MESTDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLPLAAKTIGSLLQFKRTKEEWQ 403 (984)
Q Consensus 325 ~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~~l~~~~~~~~w~ 403 (984)
++.|+.. +++...++++.|+.+|||.||++.+|.... ..++.++++|++|+++|+|+|||++++|+.|+.+++.++|+
T Consensus 298 s~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~-~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~ 376 (889)
T KOG4658|consen 298 SEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTL-GSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWR 376 (889)
T ss_pred cHhhhhccccCCccccccccCccccHHHHHHhhccccc-cccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHH
Confidence 9999998 888899999999999999999999987644 34456999999999999999999999999999999999999
Q ss_pred HHHhhhhhh----hhhhcccccchhhccccCCChhhhhhhhhcccCCCCCccChHHHHHHHHHcCCcCCC-CCchHHHhH
Q 001998 404 SVLDSEMWQ----LEEFERGLSAPLFLSYNDLPFEIKRCFSYCAIFPKGSSLKKDELVKLWMAQGYIVPK-GNKEMEVIG 478 (984)
Q Consensus 404 ~~l~~~~~~----~~~~~~~~~~~l~~sy~~L~~~~k~cfl~~~~fp~~~~i~~~~li~~Wiaeg~i~~~-~~~~~e~~~ 478 (984)
++++...+. .+...+.++++|++||+.||+++|.||+|||+||+||.|+++.|+.+||||||+.+. ++.+++++|
T Consensus 377 ~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G 456 (889)
T KOG4658|consen 377 RALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVG 456 (889)
T ss_pred HHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcch
Confidence 999876655 233457899999999999999999999999999999999999999999999999984 468899999
Q ss_pred HHHHHHHhhcccccceecCCCCceeeEEechHHHHHHHHhhc-----cceEEEeec-CCCCccccccccccceeEEEEEe
Q 001998 479 LEYFDCLASRSFYQQFVKDDDNMVIGCTMHDVVHDFAQFLTN-----NECVALEVH-GDEEPLSLINNSQDKLRHSILVL 552 (984)
Q Consensus 479 ~~~~~~L~~r~l~~~~~~~~~~~~~~~~~Hdlv~~~~~~~~~-----~e~~~~~~~-~~~~~~~~~~~~~~~~r~l~l~~ 552 (984)
..|+.+|++++|++..... ++..+|+|||+||++|.++++ +|+.++... +..+ ......+..+|++++.+
T Consensus 457 ~~~i~~LV~~~Ll~~~~~~--~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~--~~~~~~~~~~rr~s~~~ 532 (889)
T KOG4658|consen 457 YDYIEELVRASLLIEERDE--GRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSE--IPQVKSWNSVRRMSLMN 532 (889)
T ss_pred HHHHHHHHHHHHHhhcccc--cceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccc--cccccchhheeEEEEec
Confidence 9999999999999865543 667789999999999999999 676555433 1111 11122456789999999
Q ss_pred cCcccccccccCCCceeEEeccCCCcchhhhHHhhhccccccee-cCCCCc-cccCcccccccCccceEEecCCCccccc
Q 001998 553 DKVASFPVSIFNAKKLRSLLIHSPLEVLSPVLKGLFDHLTYGED-DGGENT-VHDIPREIEKLIHLRSLRLAGLKIEELP 630 (984)
Q Consensus 553 ~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lrv-~l~~~~-i~~lp~~i~~L~~Lr~L~L~~~~i~~lp 630 (984)
+.+...+.. ..+++|++|.+.++..........+|..++.||| |+++|. +.++|+.|++|.|||||+|+++.|+.+|
T Consensus 533 ~~~~~~~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP 611 (889)
T KOG4658|consen 533 NKIEHIAGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLP 611 (889)
T ss_pred cchhhccCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccc
Confidence 988764433 4566899999999853234445667999999999 999876 7899999999999999999999999999
Q ss_pred hhhccCCcccEEecccccccccccccccCCCCCCeEEeccCCCcccCCccCCCCCCCCcCCceEe
Q 001998 631 ETCCKLFNLQTLDINECYRLKRLPQGVGSLVNLRHLVVSLNGDLDYLPKGVERLTSLRTLREFVV 695 (984)
Q Consensus 631 ~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~ 695 (984)
..+++|+.|++||+..+..+..+|..+..|++||+|.+.... .......++.+.+|++|.....
T Consensus 612 ~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~-~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 612 SGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA-LSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred hHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc-cccchhhHHhhhcccchhhhee
Confidence 999999999999999998777777777779999999997653 1111223445555555554443
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=3.7e-64 Score=633.20 Aligned_cols=718 Identities=20% Similarity=0.237 Sum_probs=471.4
Q ss_pred HHHHHHHHHHHHHHHhhccccccccC---------CcccCCCCcccccccCCcccccHHHHHHHHHHHhcCCCCCCCCce
Q 001998 137 LKIKAINQTLDDIAEQKDMFNFNVIN---------SREKSEGMQSTSLIDVSEVRGRDEEMRTLKSMLLCQGSDQQTNTV 207 (984)
Q Consensus 137 ~~i~~~~~~l~~i~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~ 207 (984)
.+++++++.+.+++.... +.+.... ...........+..+..++|||+++++++..+|.... +++
T Consensus 134 ~~~~~w~~al~~~~~~~g-~~~~~~~~E~~~i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~~-----~~~ 207 (1153)
T PLN03210 134 DEKIQWKQALTDVANILG-YHSQNWPNEAKMIEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLES-----EEV 207 (1153)
T ss_pred hHHHHHHHHHHHHhCcCc-eecCCCCCHHHHHHHHHHHHHHhhccccCcccccccchHHHHHHHHHHHcccc-----Cce
Confidence 456777777777765332 1111100 0111112223344456789999999999999885433 468
Q ss_pred EEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEe---cCC-----------CC-HHHHHHHHHHHhcCCCC-Cccc
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCV---SDP-----------FD-EFSVAKAIIEELEGSAT-DLHE 271 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~---s~~-----------~~-~~~~~~~i~~~l~~~~~-~~~~ 271 (984)
++|+|+||||+||||||+++|+ ++..+|+..+|+.. +.. ++ ...+.++++.++..... ....
T Consensus 208 ~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~ 285 (1153)
T PLN03210 208 RMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYH 285 (1153)
T ss_pred EEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCC
Confidence 9999999999999999999999 57889998888742 111 11 12344555555433211 1111
Q ss_pred HHHHHHHHHHHhCCCceEEEEEcCCCCCcCChhhHHHhhcCCCCCcEEEEEccchHHHhhcCCCCeEeCCCCChHhHHHH
Q 001998 272 LNSLLRRIGANIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILLTTRKETVARMMESTDIVYVQGLSEPECWSL 351 (984)
Q Consensus 272 ~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~v~~~~~~~~~~~l~~L~~~~~~~l 351 (984)
...+++.+.+||+||||||||+. +.|+.+.......++||+||||||++.++..++..++|+++.++.++||+|
T Consensus 286 ----~~~~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~L 359 (1153)
T PLN03210 286 ----LGAMEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEM 359 (1153)
T ss_pred ----HHHHHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHH
Confidence 14567778999999999999874 568888766666678999999999999998887888999999999999999
Q ss_pred HHHHhcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHHHHhhccCCCHHHHHHHHhhhhhhhhhhcccccchhhccccCC
Q 001998 352 FRRFAFSGRTPLECDQLEEIGRGIVRKCKGLPLAAKTIGSLLQFKRTKEEWQSVLDSEMWQLEEFERGLSAPLFLSYNDL 431 (984)
Q Consensus 352 f~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~~l~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L 431 (984)
|+++||+... .++++++++++|+++|+|+|||++++|++|+.+ +.++|+.+++...... +..+..+|++||+.|
T Consensus 360 F~~~Af~~~~--~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~~W~~~l~~L~~~~---~~~I~~~L~~SYd~L 433 (1153)
T PLN03210 360 FCRSAFKKNS--PPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKEDWMDMLPRLRNGL---DGKIEKTLRVSYDGL 433 (1153)
T ss_pred HHHHhcCCCC--CcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHHhCc---cHHHHHHHHHhhhcc
Confidence 9999997643 345789999999999999999999999999865 6899999998765432 346999999999999
Q ss_pred Ch-hhhhhhhhcccCCCCCccChHHHHHHHHHcCCcCCCCCchHHHhHHHHHHHHhhcccccceecCCCCceeeEEechH
Q 001998 432 PF-EIKRCFSYCAIFPKGSSLKKDELVKLWMAQGYIVPKGNKEMEVIGLEYFDCLASRSFYQQFVKDDDNMVIGCTMHDV 510 (984)
Q Consensus 432 ~~-~~k~cfl~~~~fp~~~~i~~~~li~~Wiaeg~i~~~~~~~~e~~~~~~~~~L~~r~l~~~~~~~~~~~~~~~~~Hdl 510 (984)
++ ..|.||+++|+||.++.+ ..+..|+|.+.... +.-++.|+++||++... + .++|||+
T Consensus 434 ~~~~~k~~Fl~ia~ff~~~~~---~~v~~~l~~~~~~~----------~~~l~~L~~ksLi~~~~----~---~~~MHdL 493 (1153)
T PLN03210 434 NNKKDKAIFRHIACLFNGEKV---NDIKLLLANSDLDV----------NIGLKNLVDKSLIHVRE----D---IVEMHSL 493 (1153)
T ss_pred CccchhhhhheehhhcCCCCH---HHHHHHHHhcCCCc----------hhChHHHHhcCCEEEcC----C---eEEhhhH
Confidence 87 599999999999998744 34778888875532 12388899999997532 2 3799999
Q ss_pred HHHHHHHhhccce------EEEeecCCCCccccccccccceeEEEEEecCcccc---cccccCCCceeEEeccCCCc---
Q 001998 511 VHDFAQFLTNNEC------VALEVHGDEEPLSLINNSQDKLRHSILVLDKVASF---PVSIFNAKKLRSLLIHSPLE--- 578 (984)
Q Consensus 511 v~~~~~~~~~~e~------~~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~---~~~~~~~~~Lr~L~l~~~~~--- 578 (984)
+|++++.++.++. .+.....+............+++++++.......+ +..|..+++|+.|.+..+..
T Consensus 494 l~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~ 573 (1153)
T PLN03210 494 LQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQK 573 (1153)
T ss_pred HHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEeccccccc
Confidence 9999999987653 11111110000001122445677777765544322 34567788888887754420
Q ss_pred -chhhhHHhhhccc-cccee-cCCCCccccCcccccccCccceEEecCCCccccchhhccCCcccEEecccccccccccc
Q 001998 579 -VLSPVLKGLFDHL-TYGED-DGGENTVHDIPREIEKLIHLRSLRLAGLKIEELPETCCKLFNLQTLDINECYRLKRLPQ 655 (984)
Q Consensus 579 -~~~~~~~~~~~~l-~~Lrv-~l~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~ 655 (984)
.....++..|..+ ..||. .+.++.+..+|..+ .+.+|++|+|++|.+..+|..+..+++|+.|+|++|..+..+|.
T Consensus 574 ~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ 652 (1153)
T PLN03210 574 KEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD 652 (1153)
T ss_pred ccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc
Confidence 0000112223222 24555 66666666666655 35666666666666666666666666666666666655666664
Q ss_pred cccCCCCCCeEEeccCCCcccCCccCCCCCCCCcCCceEecCCCCcccccccccccccccccCCCeeEEcCCCCCCChhh
Q 001998 656 GVGSLVNLRHLVVSLNGDLDYLPKGVERLTSLRTLREFVVSSTGGKYCTKACKVEGLRQLNHLRGTLRIRGLGNVTDVEE 735 (984)
Q Consensus 656 ~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~ 735 (984)
+..+++|++|++++|..+..+|..++++++|+.|++..+..... +..-.++++|+ .|.+.++..+.....
T Consensus 653 -ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~--------Lp~~i~l~sL~-~L~Lsgc~~L~~~p~ 722 (1153)
T PLN03210 653 -LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEI--------LPTGINLKSLY-RLNLSGCSRLKSFPD 722 (1153)
T ss_pred -cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCc--------cCCcCCCCCCC-EEeCCCCCCcccccc
Confidence 66666666666666666666666666666666666554332210 00000222333 333333332221110
Q ss_pred hhHhcccCCCCCCeEEEEEcCCcccccCcCc--------hhhccHHHH--------hhcCCCCCCCCeEEEeecCCCCCC
Q 001998 736 AEKADLEKKKNIVGLELRFDKEEAATEGINE--------ENEINHQAI--------SEALRPPPDLEALEIMHYKGQTAF 799 (984)
Q Consensus 736 ~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~--------~~~~~~~~~--------~~~l~~~~~L~~L~L~~~~~~~~l 799 (984)
...+|+.|++..+.....+..+.. .... ...+ +.....+++|++|+|++|.....+
T Consensus 723 -------~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~-~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~l 794 (1153)
T PLN03210 723 -------ISTNISWLDLDETAIEEFPSNLRLENLDELILCEMK-SEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVEL 794 (1153)
T ss_pred -------ccCCcCeeecCCCccccccccccccccccccccccc-hhhccccccccchhhhhccccchheeCCCCCCcccc
Confidence 122344444444432211110000 0000 0000 011223578999999999877779
Q ss_pred CchhhcCCCCcEEEEeCcCCCCcCCCCCCCCCcceeeeccccCceEecceecCccCCCCCCCCCCccCcccccccccccc
Q 001998 800 PSWIVSLNKLKKLKLSSCCKCEIMPPLGALPSLEILQIQRMESVKRVGVEFLGIESFNDYAPSSSLSLTAFPKLKELTLF 879 (984)
Q Consensus 800 p~~l~~l~~L~~L~L~~~~~~~~l~~l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~f~~L~~L~l~ 879 (984)
|.+++++++|+.|+|++|..++.+|....+++|+.|++++|..+..++. ..++|+.|.+.
T Consensus 795 P~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~--------------------~~~nL~~L~Ls 854 (1153)
T PLN03210 795 PSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPD--------------------ISTNISDLNLS 854 (1153)
T ss_pred ChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccc--------------------cccccCEeECC
Confidence 9999999999999999999988888866899999999999986654432 23466677665
Q ss_pred cCCCCcccccCCCCcccCCcccEEeeecCcCCCCCCcCCCCCCCcCeEEeccCcchHH
Q 001998 880 HLDGCEEWDFGKEDVIIMPQLCYLDIRFCRKLKSLPDQLLQSSTLEKLRIIRAPILRE 937 (984)
Q Consensus 880 ~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~i~~c~~l~~ 937 (984)
+. .++ ..+..+..+++|+.|+|++|+++..+|..+..+++|+.+++++|+.|..
T Consensus 855 ~n-~i~---~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~ 908 (1153)
T PLN03210 855 RT-GIE---EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTE 908 (1153)
T ss_pred CC-CCc---cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccc
Confidence 42 222 2233455688888888888888888888777888888888888887753
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1.2e-44 Score=392.16 Aligned_cols=279 Identities=35% Similarity=0.623 Sum_probs=228.4
Q ss_pred cHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHHHHHhc
Q 001998 184 RDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAIIEELE 263 (984)
Q Consensus 184 r~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 263 (984)
||.++++|.+.|.... ++.++|+|+||||+||||||+++|++..++.+|+.++||.++...+...++..|++++.
T Consensus 1 re~~~~~l~~~L~~~~-----~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~ 75 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS-----NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLG 75 (287)
T ss_dssp -HHHHHHHHHHHHTTT-----TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhhCCC-----CCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccccccccccccccc
Confidence 7899999999998744 36899999999999999999999997778999999999999999999999999999998
Q ss_pred CCCC---CcccHHHHHHHHHHHhCCCceEEEEEcCCCCCcCChhhHHHhhcCCCCCcEEEEEccchHHHhhcCC-CCeEe
Q 001998 264 GSAT---DLHELNSLLRRIGANIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILLTTRKETVARMMES-TDIVY 339 (984)
Q Consensus 264 ~~~~---~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~v~~~~~~-~~~~~ 339 (984)
.... ...+.+.....+++.|.++++||||||||+. ..|+.+...++....|++||||||+..++..++. ...++
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~ 153 (287)
T PF00931_consen 76 EPDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDE--EDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIE 153 (287)
T ss_dssp CC-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SH--HHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEE
T ss_pred ccccccccccccccccccchhhhccccceeeeeeeccc--cccccccccccccccccccccccccccccccccccccccc
Confidence 7633 4467788999999999999999999999875 4788888888887789999999999999887665 67999
Q ss_pred CCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHHHHhhccCCCHHHHHHHHhhhhhhhhh---h
Q 001998 340 VQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLPLAAKTIGSLLQFKRTKEEWQSVLDSEMWQLEE---F 416 (984)
Q Consensus 340 l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~~l~~~~~~~~w~~~l~~~~~~~~~---~ 416 (984)
+++|+.++|++||.+.++... ....+.+.+++++|+++|+|+|||++++|++|+.+.+..+|.+++++..+...+ .
T Consensus 154 l~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~ 232 (287)
T PF00931_consen 154 LEPLSEEEALELFKKRAGRKE-SESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDY 232 (287)
T ss_dssp CSS--HHHHHHHHHHHHTSHS-----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGS
T ss_pred ccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999997665 223355677889999999999999999999997766788999998876655432 3
Q ss_pred cccccchhhccccCCChhhhhhhhhcccCCCCCccChHHHHHHHHHcCCcCCCC
Q 001998 417 ERGLSAPLFLSYNDLPFEIKRCFSYCAIFPKGSSLKKDELVKLWMAQGYIVPKG 470 (984)
Q Consensus 417 ~~~~~~~l~~sy~~L~~~~k~cfl~~~~fp~~~~i~~~~li~~Wiaeg~i~~~~ 470 (984)
...+..++.+||+.||+++|.||+|||+||+++.|+++.|+++|+|||||...+
T Consensus 233 ~~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~~ 286 (287)
T PF00931_consen 233 DRSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSKH 286 (287)
T ss_dssp CHHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC---
T ss_pred cccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcccC
Confidence 467999999999999999999999999999999999999999999999998653
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.91 E-value=1.8e-24 Score=274.53 Aligned_cols=400 Identities=20% Similarity=0.193 Sum_probs=235.4
Q ss_pred cceeEEEEEecCcc-cccccccCCCceeEEeccCCCcchhhhHHhhhccccccee-cCCCCccc-cCcccccccCccceE
Q 001998 543 DKLRHSILVLDKVA-SFPVSIFNAKKLRSLLIHSPLEVLSPVLKGLFDHLTYGED-DGGENTVH-DIPREIEKLIHLRSL 619 (984)
Q Consensus 543 ~~~r~l~l~~~~~~-~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lrv-~l~~~~i~-~lp~~i~~L~~Lr~L 619 (984)
.+++.+.+..+.+. .+|..+.++++|++|++.+|. +....+..+.+++.|+. ++++|.+. .+|..++++++|++|
T Consensus 164 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~--l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 241 (968)
T PLN00113 164 SSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQ--LVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHL 241 (968)
T ss_pred CCCCEEECccCcccccCChhhhhCcCCCeeeccCCC--CcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEE
Confidence 45666666665543 345566667777777776665 22223445666677777 77766654 466667777777777
Q ss_pred EecCCCcc-ccchhhccCCcccEEecccccccccccccccCCCCCCeEEeccCCCcccCCccCCCCCCCCcCCceEecCC
Q 001998 620 RLAGLKIE-ELPETCCKLFNLQTLDINECYRLKRLPQGVGSLVNLRHLVVSLNGDLDYLPKGVERLTSLRTLREFVVSST 698 (984)
Q Consensus 620 ~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~ 698 (984)
+|++|.+. .+|..++++++|++|++++|.....+|..+.++++|++|++++|.....+|..+.++++|+.|++..+...
T Consensus 242 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~ 321 (968)
T PLN00113 242 DLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFT 321 (968)
T ss_pred ECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccC
Confidence 77777665 56667777777777777776644456666777777777777766544456666666777777766554433
Q ss_pred CCcccccccccccccccccCCCeeEEcCCCCCCChhhhhHhcccCCCCCCeEEEEEcCCccccc-C---------cCchh
Q 001998 699 GGKYCTKACKVEGLRQLNHLRGTLRIRGLGNVTDVEEAEKADLEKKKNIVGLELRFDKEEAATE-G---------INEEN 768 (984)
Q Consensus 699 ~~~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~-~---------~~~~~ 768 (984)
. .....+..+.+|+ .|.+.++.-... ....+..+.+|+.|++++|....... . +....
T Consensus 322 ~-------~~~~~~~~l~~L~-~L~L~~n~l~~~----~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~ 389 (968)
T PLN00113 322 G-------KIPVALTSLPRLQ-VLQLWSNKFSGE----IPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFS 389 (968)
T ss_pred C-------cCChhHhcCCCCC-EEECcCCCCcCc----CChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcC
Confidence 2 1111222333333 444433221111 11234455667777776665432110 0 00001
Q ss_pred hccHHHHhhcCCCCCCCCeEEEeecCCCCCCCchhhcCCCCcEEEEeCcCCCCcCCC-CCCCCCcceeeeccccCceEec
Q 001998 769 EINHQAISEALRPPPDLEALEIMHYKGQTAFPSWIVSLNKLKKLKLSSCCKCEIMPP-LGALPSLEILQIQRMESVKRVG 847 (984)
Q Consensus 769 ~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~l~~-l~~Lp~L~~L~L~~~~~l~~~~ 847 (984)
......++..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.....+|. +..+++|+.|++++|.....++
T Consensus 390 n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p 469 (968)
T PLN00113 390 NSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLP 469 (968)
T ss_pred CEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecC
Confidence 111122344555667788888888877766777777888888888888776665554 6678888888888876444443
Q ss_pred ceecCccCCCCC-------CCCCCccCcccccccccccccCCCCcccccCCCCcccCCcccEEeeecCcCCCCCCcCCCC
Q 001998 848 VEFLGIESFNDY-------APSSSLSLTAFPKLKELTLFHLDGCEEWDFGKEDVIIMPQLCYLDIRFCRKLKSLPDQLLQ 920 (984)
Q Consensus 848 ~~~~~~~~~~~l-------~~~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~ 920 (984)
..+ +...+..+ ....+..+..+++|+.|.+.++ ......+..+..+++|++|+|++|.....+|..+..
T Consensus 470 ~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N---~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 545 (968)
T PLN00113 470 DSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSEN---KLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSE 545 (968)
T ss_pred ccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCC---cceeeCChHHcCccCCCEEECCCCcccccCChhHhC
Confidence 321 11222111 1112223334555555555443 222333445667888999999998877778888888
Q ss_pred CCCcCeEEeccCcchHHhhccCCCCCccccccccceeecCceeee
Q 001998 921 SSTLEKLRIIRAPILRERFKKDTGEDWSKISHIRDIQIDHEYVQG 965 (984)
Q Consensus 921 l~~L~~L~i~~c~~l~~~~~~~~~~~~~~i~~i~~l~~~~~~~~~ 965 (984)
+++|+.|++++|.... ........+..+..+.+.+|.+.+
T Consensus 546 l~~L~~L~Ls~N~l~~-----~~p~~l~~l~~L~~l~ls~N~l~~ 585 (968)
T PLN00113 546 MPVLSQLDLSQNQLSG-----EIPKNLGNVESLVQVNISHNHLHG 585 (968)
T ss_pred cccCCEEECCCCcccc-----cCChhHhcCcccCEEeccCCccee
Confidence 8899999999887532 122233445667777887777765
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.91 E-value=2.9e-24 Score=272.67 Aligned_cols=358 Identities=19% Similarity=0.220 Sum_probs=195.1
Q ss_pred cceeEEEEEecCcc-ccccccc-CCCceeEEeccCCCcchhhhHHhhhccccccee-cCCCCccc-cCcccccccCccce
Q 001998 543 DKLRHSILVLDKVA-SFPVSIF-NAKKLRSLLIHSPLEVLSPVLKGLFDHLTYGED-DGGENTVH-DIPREIEKLIHLRS 618 (984)
Q Consensus 543 ~~~r~l~l~~~~~~-~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lrv-~l~~~~i~-~lp~~i~~L~~Lr~ 618 (984)
..++.|.+..+.+. .+|..+. .+++||+|++.+|.. ....+ ...+..|++ ++++|.+. .+|..++++.+|++
T Consensus 93 ~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l--~~~~p--~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~ 168 (968)
T PLN00113 93 PYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNF--TGSIP--RGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKV 168 (968)
T ss_pred CCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCcc--ccccC--ccccCCCCEEECcCCcccccCChHHhcCCCCCE
Confidence 45566666555543 3444433 566666666666541 11111 134556666 66666654 45666777777777
Q ss_pred EEecCCCcc-ccchhhccCCcccEEecccccccccccccccCCCCCCeEEeccCCCcccCCccCCCCCCCCcCCceEecC
Q 001998 619 LRLAGLKIE-ELPETCCKLFNLQTLDINECYRLKRLPQGVGSLVNLRHLVVSLNGDLDYLPKGVERLTSLRTLREFVVSS 697 (984)
Q Consensus 619 L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~ 697 (984)
|+|++|.+. .+|..++++++|++|++++|.....+|..++++++|++|++++|.....+|..++++++|+.|++..+..
T Consensus 169 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 248 (968)
T PLN00113 169 LDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNL 248 (968)
T ss_pred EECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCcee
Confidence 777777654 5666777777777777777764555676677777777777776655456666677777777776655443
Q ss_pred CCCcccccccccccccccccCCCeeEEcCCCCCCChhhhhHhcccCCCCCCeEEEEEcCCcccccCcCchhhccHHHHhh
Q 001998 698 TGGKYCTKACKVEGLRQLNHLRGTLRIRGLGNVTDVEEAEKADLEKKKNIVGLELRFDKEEAATEGINEENEINHQAISE 777 (984)
Q Consensus 698 ~~~~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~ 777 (984)
.. .....+.++++|+ .|.+.+..-. ......+..+++|+.|++++|.... .++.
T Consensus 249 ~~-------~~p~~l~~l~~L~-~L~L~~n~l~----~~~p~~l~~l~~L~~L~Ls~n~l~~--------------~~p~ 302 (968)
T PLN00113 249 TG-------PIPSSLGNLKNLQ-YLFLYQNKLS----GPIPPSIFSLQKLISLDLSDNSLSG--------------EIPE 302 (968)
T ss_pred cc-------ccChhHhCCCCCC-EEECcCCeee----ccCchhHhhccCcCEEECcCCeecc--------------CCCh
Confidence 21 1111233333333 4444332110 1111234455677777776665421 2344
Q ss_pred cCCCCCCCCeEEEeecCCCCCCCchhhcCCCCcEEEEeCcCCCCcCCC-CCCCCCcceeeeccccCceEecceecCccCC
Q 001998 778 ALRPPPDLEALEIMHYKGQTAFPSWIVSLNKLKKLKLSSCCKCEIMPP-LGALPSLEILQIQRMESVKRVGVEFLGIESF 856 (984)
Q Consensus 778 ~l~~~~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~l~~-l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~~ 856 (984)
.+..+++|+.|++++|.+.+.+|.++..+++|+.|++++|.....+|. ++.+++|+.|++++|.....++..+.....+
T Consensus 303 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L 382 (968)
T PLN00113 303 LVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNL 382 (968)
T ss_pred hHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCC
Confidence 556667777787777777766777777777788888877776655554 7777777777777765333343333322222
Q ss_pred CCC-------CCCCCccCcccccccccccccCCCCcccccCCCCcccCCcccEEeeecCcCCCCCCcCCCCCCCcCeEEe
Q 001998 857 NDY-------APSSSLSLTAFPKLKELTLFHLDGCEEWDFGKEDVIIMPQLCYLDIRFCRKLKSLPDQLLQSSTLEKLRI 929 (984)
Q Consensus 857 ~~l-------~~~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~i 929 (984)
..+ ....+..+..+++|+.|.+.++.- ....+..+..+++|+.|++++|.....+|..+..+++|+.|++
T Consensus 383 ~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l---~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 459 (968)
T PLN00113 383 FKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSF---SGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSL 459 (968)
T ss_pred CEEECcCCEecccCCHHHhCCCCCCEEECcCCEe---eeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEEC
Confidence 111 111222334556666665544321 1112222334444555555544433333433334444444444
Q ss_pred ccCc
Q 001998 930 IRAP 933 (984)
Q Consensus 930 ~~c~ 933 (984)
++|.
T Consensus 460 ~~n~ 463 (968)
T PLN00113 460 ARNK 463 (968)
T ss_pred cCce
Confidence 4443
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.88 E-value=3e-25 Score=237.21 Aligned_cols=339 Identities=20% Similarity=0.246 Sum_probs=183.2
Q ss_pred ceeEEEEEecCcccccccccCCCceeEEeccCCCcchhhhHHhhhccccccee-cCCCCccc--cCcccccccCccceEE
Q 001998 544 KLRHSILVLDKVASFPVSIFNAKKLRSLLIHSPLEVLSPVLKGLFDHLTYGED-DGGENTVH--DIPREIEKLIHLRSLR 620 (984)
Q Consensus 544 ~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lrv-~l~~~~i~--~lp~~i~~L~~Lr~L~ 620 (984)
.++-+.+....+..+|..+..+.+|..|.+..|. ... +..-+..+..||. ++..|++. .+|..|.+|..|..||
T Consensus 33 ~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~--L~~-vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lD 109 (1255)
T KOG0444|consen 33 QMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQ--LIS-VHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILD 109 (1255)
T ss_pred heeEEEechhhhhhChHHHHHHhhhhhhhhhhhh--hHh-hhhhhccchhhHHHhhhccccccCCCCchhcccccceeee
Confidence 4455555555555556666666666666666554 222 1222455566666 66666543 3666666666666666
Q ss_pred ecCCCccccchhhccCCcccEEecccccccccccccc-cCCCCCCeEEeccCCCcccCCccCCCCCCCCcCCceEecCCC
Q 001998 621 LAGLKIEELPETCCKLFNLQTLDINECYRLKRLPQGV-GSLVNLRHLVVSLNGDLDYLPKGVERLTSLRTLREFVVSSTG 699 (984)
Q Consensus 621 L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i-~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~ 699 (984)
||+|++.+.|..+..-+|+-+|+|++|+ +..+|..+ -+|+-|-+|++++| .+..+|+.+.+|.+||+|.+.++...
T Consensus 110 LShNqL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~~LqtL~Ls~NPL~- 186 (1255)
T KOG0444|consen 110 LSHNQLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRLSMLQTLKLSNNPLN- 186 (1255)
T ss_pred cchhhhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHHhhhhhhhcCCChhh-
Confidence 6666666666666666666666666665 66666543 46666666666665 56666666666666666666554433
Q ss_pred CcccccccccccccccccCCCeeEEcCCCCCCChhhhhHhcccCCCCCCeEEEEEcCCcccccCcCchhhccHHHHhhcC
Q 001998 700 GKYCTKACKVEGLRQLNHLRGTLRIRGLGNVTDVEEAEKADLEKKKNIVGLELRFDKEEAATEGINEENEINHQAISEAL 779 (984)
Q Consensus 700 ~~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~l 779 (984)
.+.+.+|+.++.|. .|.+.+ ......-...++..+.||+.++++.|... .+++.+
T Consensus 187 ------hfQLrQLPsmtsL~-vLhms~---TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp---------------~vPecl 241 (1255)
T KOG0444|consen 187 ------HFQLRQLPSMTSLS-VLHMSN---TQRTLDNIPTSLDDLHNLRDVDLSENNLP---------------IVPECL 241 (1255)
T ss_pred ------HHHHhcCccchhhh-hhhccc---ccchhhcCCCchhhhhhhhhccccccCCC---------------cchHHH
Confidence 33344444444333 222222 11111112233445556666666655442 245555
Q ss_pred CCCCCCCeEEEeecCCCCCCCchhhcCCCCcEEEEeCcCCCCcCCC-CCCCCCcceeeeccccCceEecceecCccCCCC
Q 001998 780 RPPPDLEALEIMHYKGQTAFPSWIVSLNKLKKLKLSSCCKCEIMPP-LGALPSLEILQIQRMESVKRVGVEFLGIESFND 858 (984)
Q Consensus 780 ~~~~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~l~~-l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~~~~ 858 (984)
-.+++|+.|+|++|.++. +....+.-.+|++|+++.|+.. .+|. +..|+.|+.|.+.+|. +. |.|.+
T Consensus 242 y~l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~Nk-L~-----FeGiP---- 309 (1255)
T KOG0444|consen 242 YKLRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNK-LT-----FEGIP---- 309 (1255)
T ss_pred hhhhhhheeccCcCceee-eeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCc-cc-----ccCCc----
Confidence 556666666666666655 4444444456666666666333 3443 6666666666665543 21 11111
Q ss_pred CCCCCCccCcccccccccccccCCCCcccccCCCCcccCCcccEEeeecCcCCCCCCcCCCCCCCcCeEEeccCcchH
Q 001998 859 YAPSSSLSLTAFPKLKELTLFHLDGCEEWDFGKEDVIIMPQLCYLDIRFCRKLKSLPDQLLQSSTLEKLRIIRAPILR 936 (984)
Q Consensus 859 l~~~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~i~~c~~l~ 936 (984)
..++.+.+|+.+... ++ .+...|.+++.++.|+.|.+++|. |-.+|+.+.-++.|+.|+++.||+|.
T Consensus 310 ------SGIGKL~~Levf~aa---nN-~LElVPEglcRC~kL~kL~L~~Nr-LiTLPeaIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 310 ------SGIGKLIQLEVFHAA---NN-KLELVPEGLCRCVKLQKLKLDHNR-LITLPEAIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred ------cchhhhhhhHHHHhh---cc-ccccCchhhhhhHHHHHhcccccc-eeechhhhhhcCCcceeeccCCcCcc
Confidence 112223333333222 21 223334445566677777776664 55667777667777777777777655
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.86 E-value=2.6e-24 Score=230.11 Aligned_cols=323 Identities=24% Similarity=0.247 Sum_probs=241.0
Q ss_pred ccceeEEEEEecCcccccccccCCCceeEEeccCCCcchhhhHHhhhccccccee-cCCCCccccCcccccccCccceEE
Q 001998 542 QDKLRHSILVLDKVASFPVSIFNAKKLRSLLIHSPLEVLSPVLKGLFDHLTYGED-DGGENTVHDIPREIEKLIHLRSLR 620 (984)
Q Consensus 542 ~~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lrv-~l~~~~i~~lp~~i~~L~~Lr~L~ 620 (984)
..++.|+++..+.+..+...+..++.||++.+..|......++++ +-.+.-|.+ |+++|.+.+.|..+..-+++-.|+
T Consensus 54 lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~d-iF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLN 132 (1255)
T KOG0444|consen 54 LQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTD-IFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLN 132 (1255)
T ss_pred HhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCch-hcccccceeeecchhhhhhcchhhhhhcCcEEEE
Confidence 457889999888887777778899999999998887444454555 667888999 999999999999999999999999
Q ss_pred ecCCCccccchhh-ccCCcccEEecccccccccccccccCCCCCCeEEeccCCCcccCCccCCCCCCCCcCCceEecCCC
Q 001998 621 LAGLKIEELPETC-CKLFNLQTLDINECYRLKRLPQGVGSLVNLRHLVVSLNGDLDYLPKGVERLTSLRTLREFVVSSTG 699 (984)
Q Consensus 621 L~~~~i~~lp~~i-~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~ 699 (984)
||+|+|.++|.++ .+|+.|-+|||++|+ +..+|+.+..|.+|+.|.+++|+....--..+-.|++|+.|.+.+....-
T Consensus 133 LS~N~IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl 211 (1255)
T KOG0444|consen 133 LSYNNIETIPNSLFINLTDLLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTL 211 (1255)
T ss_pred cccCccccCCchHHHhhHhHhhhccccch-hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchh
Confidence 9999999999864 489999999999998 99999999999999999999986432222234457777777776554432
Q ss_pred CcccccccccccccccccCCCeeEEcCCCCCCChhhhhHhcccCCCCCCeEEEEEcCCcccccCcCchhhccHHHHhhcC
Q 001998 700 GKYCTKACKVEGLRQLNHLRGTLRIRGLGNVTDVEEAEKADLEKKKNIVGLELRFDKEEAATEGINEENEINHQAISEAL 779 (984)
Q Consensus 700 ~~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~l 779 (984)
.+. ...+.. |.+|+ .+.+. +.+++.+.+ .+-++.+|+.|+|+.|.++.. --..
T Consensus 212 ~N~---Ptsld~---l~NL~-dvDlS-~N~Lp~vPe----cly~l~~LrrLNLS~N~iteL---------------~~~~ 264 (1255)
T KOG0444|consen 212 DNI---PTSLDD---LHNLR-DVDLS-ENNLPIVPE----CLYKLRNLRRLNLSGNKITEL---------------NMTE 264 (1255)
T ss_pred hcC---CCchhh---hhhhh-hcccc-ccCCCcchH----HHhhhhhhheeccCcCceeee---------------eccH
Confidence 111 222333 33333 22221 222333322 244678999999999876532 1112
Q ss_pred CCCCCCCeEEEeecCCCCCCCchhhcCCCCcEEEEeCcCCC-CcCCC-CCCCCCcceeeeccccCceEecceecCccCCC
Q 001998 780 RPPPDLEALEIMHYKGQTAFPSWIVSLNKLKKLKLSSCCKC-EIMPP-LGALPSLEILQIQRMESVKRVGVEFLGIESFN 857 (984)
Q Consensus 780 ~~~~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~-~~l~~-l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~~~ 857 (984)
..-.+|++|+++.|.++. +|+.+..|++|+.|.+.+|... +.+|+ +|.|.+|+++...+|. ++-++.+
T Consensus 265 ~~W~~lEtLNlSrNQLt~-LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~-LElVPEg-------- 334 (1255)
T KOG0444|consen 265 GEWENLETLNLSRNQLTV-LPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNK-LELVPEG-------- 334 (1255)
T ss_pred HHHhhhhhhccccchhcc-chHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccc-cccCchh--------
Confidence 224689999999999988 9999999999999999988754 46666 9999999999998765 6655543
Q ss_pred CCCCCCCccCcccccccccccccCCCCcccccCCCCcccCCcccEEeeecCcCCCCCCc
Q 001998 858 DYAPSSSLSLTAFPKLKELTLFHLDGCEEWDFGKEDVIIMPQLCYLDIRFCRKLKSLPD 916 (984)
Q Consensus 858 ~l~~~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~ 916 (984)
+..|+.|++|.+.+. .+...|.++.-+|-|+.|+++.||+|..-|.
T Consensus 335 ---------lcRC~kL~kL~L~~N----rLiTLPeaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 335 ---------LCRCVKLQKLKLDHN----RLITLPEAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred ---------hhhhHHHHHhccccc----ceeechhhhhhcCCcceeeccCCcCccCCCC
Confidence 357899999998653 2333456677899999999999999976654
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.82 E-value=1.1e-22 Score=207.85 Aligned_cols=237 Identities=25% Similarity=0.295 Sum_probs=166.9
Q ss_pred eeEEEEEecCcccccccccCCCceeEEeccCCCcchhhhHHhhhccccccee-cCCCCccccCcccccccCccceEEecC
Q 001998 545 LRHSILVLDKVASFPVSIFNAKKLRSLLIHSPLEVLSPVLKGLFDHLTYGED-DGGENTVHDIPREIEKLIHLRSLRLAG 623 (984)
Q Consensus 545 ~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lrv-~l~~~~i~~lp~~i~~L~~Lr~L~L~~ 623 (984)
+-.+.++.+....+|.++..+..+..|+++.+. ... ++..+..+..|+- +++.|.+.++|++|+.+..|..|+..+
T Consensus 70 l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~--ls~-lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~ 146 (565)
T KOG0472|consen 70 LTVLNVHDNKLSQLPAAIGELEALKSLNVSHNK--LSE-LPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATN 146 (565)
T ss_pred eeEEEeccchhhhCCHHHHHHHHHHHhhcccch--Hhh-ccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccc
Confidence 344556677777788888888999999988876 444 3444666666777 999999999999999999999999999
Q ss_pred CCccccchhhccCCcccEEecccccccccccccccCCCCCCeEEeccCCCcccCCccCCCCCCCCcCCceEecCCCCccc
Q 001998 624 LKIEELPETCCKLFNLQTLDINECYRLKRLPQGVGSLVNLRHLVVSLNGDLDYLPKGVERLTSLRTLREFVVSSTGGKYC 703 (984)
Q Consensus 624 ~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~ 703 (984)
|+|.++|..++++..|..|++.+|. ++++|+..-+|+.|+||+...| .+..+|+.++.|.+|..|++..++...
T Consensus 147 N~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~m~~L~~ld~~~N-~L~tlP~~lg~l~~L~~LyL~~Nki~~---- 220 (565)
T KOG0472|consen 147 NQISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIAMKRLKHLDCNSN-LLETLPPELGGLESLELLYLRRNKIRF---- 220 (565)
T ss_pred cccccCchHHHHHHHHHHhhccccc-hhhCCHHHHHHHHHHhcccchh-hhhcCChhhcchhhhHHHHhhhccccc----
Confidence 9999999999999999999999988 8888887777999999998887 788999999999999999988776543
Q ss_pred ccccccccccccccCCCeeEEcCCCCCCChhhhhHhcccCCCCCCeEEEEEcCCcccccCcCchhhccHHHHhhcCCCCC
Q 001998 704 TKACKVEGLRQLNHLRGTLRIRGLGNVTDVEEAEKADLEKKKNIVGLELRFDKEEAATEGINEENEINHQAISEALRPPP 783 (984)
Q Consensus 704 ~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 783 (984)
...+..+..|+.+. + ....++......++.+.++..|++..|.... ++..+.-+.
T Consensus 221 --lPef~gcs~L~Elh----~----g~N~i~~lpae~~~~L~~l~vLDLRdNklke---------------~Pde~clLr 275 (565)
T KOG0472|consen 221 --LPEFPGCSLLKELH----V----GENQIEMLPAEHLKHLNSLLVLDLRDNKLKE---------------VPDEICLLR 275 (565)
T ss_pred --CCCCCccHHHHHHH----h----cccHHHhhHHHHhcccccceeeecccccccc---------------CchHHHHhh
Confidence 11222233333221 1 1122333444555667777777777776532 333344445
Q ss_pred CCCeEEEeecCCCCCCCchhhcCCCCcEEEEeCc
Q 001998 784 DLEALEIMHYKGQTAFPSWIVSLNKLKKLKLSSC 817 (984)
Q Consensus 784 ~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~ 817 (984)
+|++|++++|.+++ +|..++++ .|+.|.+.+|
T Consensus 276 sL~rLDlSNN~is~-Lp~sLgnl-hL~~L~leGN 307 (565)
T KOG0472|consen 276 SLERLDLSNNDISS-LPYSLGNL-HLKFLALEGN 307 (565)
T ss_pred hhhhhcccCCcccc-CCcccccc-eeeehhhcCC
Confidence 55555555555554 55555544 4444444443
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.81 E-value=7.8e-21 Score=202.83 Aligned_cols=326 Identities=23% Similarity=0.251 Sum_probs=176.4
Q ss_pred CceeEEeccCCCcchhhhHHhhhccccccee-cCCCCccccCcccccccCccceEEecCCCccccc-hhhccCCcccEEe
Q 001998 566 KKLRSLLIHSPLEVLSPVLKGLFDHLTYGED-DGGENTVHDIPREIEKLIHLRSLRLAGLKIEELP-ETCCKLFNLQTLD 643 (984)
Q Consensus 566 ~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lrv-~l~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~ 643 (984)
+..++|++++|. +..+-..+|.++..|+. .+..|.++.+|...+...||+.|+|.+|.|.++. +++..++.|++||
T Consensus 78 ~~t~~LdlsnNk--l~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslD 155 (873)
T KOG4194|consen 78 SQTQTLDLSNNK--LSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLD 155 (873)
T ss_pred cceeeeeccccc--cccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhh
Confidence 345667776665 33334455666676666 7777777777766666666777777777666554 3566666677777
Q ss_pred ccccccccccc-ccccCCCCCCeEEeccCCCcccCCc-cCCCCCCCCcCCceEecCCCCcccccccccccccccccCC--
Q 001998 644 INECYRLKRLP-QGVGSLVNLRHLVVSLNGDLDYLPK-GVERLTSLRTLREFVVSSTGGKYCTKACKVEGLRQLNHLR-- 719 (984)
Q Consensus 644 L~~~~~l~~lP-~~i~~L~~L~~L~l~~~~~l~~~p~-~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~-- 719 (984)
|+.|. +.++| +++..=.++++|++++| .++.+.. .|..+.+|-+|.+..+...... ...++.|++|++|.
T Consensus 156 LSrN~-is~i~~~sfp~~~ni~~L~La~N-~It~l~~~~F~~lnsL~tlkLsrNrittLp----~r~Fk~L~~L~~LdLn 229 (873)
T KOG4194|consen 156 LSRNL-ISEIPKPSFPAKVNIKKLNLASN-RITTLETGHFDSLNSLLTLKLSRNRITTLP----QRSFKRLPKLESLDLN 229 (873)
T ss_pred hhhch-hhcccCCCCCCCCCceEEeeccc-cccccccccccccchheeeecccCcccccC----HHHhhhcchhhhhhcc
Confidence 77665 66655 33444456666666666 3333332 2555556666655554443211 22223333332221
Q ss_pred -CeeEEc------CCCCC-------CChhhhhHhcccCCCCCCeEEEEEcCCcccccCcCchhhccHHHHhhcCCCCCCC
Q 001998 720 -GTLRIR------GLGNV-------TDVEEAEKADLEKKKNIVGLELRFDKEEAATEGINEENEINHQAISEALRPPPDL 785 (984)
Q Consensus 720 -~~L~i~------~~~~~-------~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L 785 (984)
..+.+. +++.+ .++.......+-.+.+++.|+|..|..... --.++-+++.|
T Consensus 230 rN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~v--------------n~g~lfgLt~L 295 (873)
T KOG4194|consen 230 RNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAV--------------NEGWLFGLTSL 295 (873)
T ss_pred ccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhh--------------hcccccccchh
Confidence 000000 00000 011111122334455666666665554321 12345566777
Q ss_pred CeEEEeecCCCCCCCchhhcCCCCcEEEEeCcCCCCcCCC-CCCCCCcceeeeccccCceEecceecCccCCCCCCCCCC
Q 001998 786 EALEIMHYKGQTAFPSWIVSLNKLKKLKLSSCCKCEIMPP-LGALPSLEILQIQRMESVKRVGVEFLGIESFNDYAPSSS 864 (984)
Q Consensus 786 ~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~l~~-l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~~~~ 864 (984)
+.|+++.|.+...-++....+++|+.|+|++|....--+. +..|..|+.|+|++|. +.++.+
T Consensus 296 ~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Ns-i~~l~e---------------- 358 (873)
T KOG4194|consen 296 EQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNS-IDHLAE---------------- 358 (873)
T ss_pred hhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccc-hHHHHh----------------
Confidence 7777777776664455555667777777777755543332 6667777777777665 443332
Q ss_pred ccCcccccccccccccCCCCc-ccccCCC--CcccCCcccEEeeecCcCCCCCCc-CCCCCCCcCeEEeccCcc
Q 001998 865 LSLTAFPKLKELTLFHLDGCE-EWDFGKE--DVIIMPQLCYLDIRFCRKLKSLPD-QLLQSSTLEKLRIIRAPI 934 (984)
Q Consensus 865 ~~~~~f~~L~~L~l~~l~~l~-~~~~~~~--~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~i~~c~~ 934 (984)
+.|..|+.|...++..++ .|.+... .+..||+|+.|.+.+|. ++.+|. .+..+++|+.|++.+|+.
T Consensus 359 ---~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNq-lk~I~krAfsgl~~LE~LdL~~Nai 428 (873)
T KOG4194|consen 359 ---GAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQ-LKSIPKRAFSGLEALEHLDLGDNAI 428 (873)
T ss_pred ---hHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCce-eeecchhhhccCcccceecCCCCcc
Confidence 233333333333333332 2333322 25667888888888774 777764 455677888888887765
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.80 E-value=5.2e-19 Score=224.26 Aligned_cols=329 Identities=21% Similarity=0.246 Sum_probs=202.6
Q ss_pred ccceeEEEEEecCcc-------cccccccCC-CceeEEeccCCCcchhhhHHhhhccccccee-cCCCCccccCcccccc
Q 001998 542 QDKLRHSILVLDKVA-------SFPVSIFNA-KKLRSLLIHSPLEVLSPVLKGLFDHLTYGED-DGGENTVHDIPREIEK 612 (984)
Q Consensus 542 ~~~~r~l~l~~~~~~-------~~~~~~~~~-~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lrv-~l~~~~i~~lp~~i~~ 612 (984)
..+++.+.+...... .+|..+..+ ++||.|.+.++. ... +|..| .+..|+. +++++.+..+|..+..
T Consensus 557 m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~--l~~-lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~ 632 (1153)
T PLN03210 557 MRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYP--LRC-MPSNF-RPENLVKLQMQGSKLEKLWDGVHS 632 (1153)
T ss_pred CccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCC--CCC-CCCcC-CccCCcEEECcCcccccccccccc
Confidence 445566655433211 234444443 357777776654 222 23223 3456666 7777777777777777
Q ss_pred cCccceEEecCCC-ccccchhhccCCcccEEecccccccccccccccCCCCCCeEEeccCCCcccCCccCCCCCCCCcCC
Q 001998 613 LIHLRSLRLAGLK-IEELPETCCKLFNLQTLDINECYRLKRLPQGVGSLVNLRHLVVSLNGDLDYLPKGVERLTSLRTLR 691 (984)
Q Consensus 613 L~~Lr~L~L~~~~-i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~ 691 (984)
+++|++|+|++|. +..+| .++.+++|++|+|++|..+..+|..+.++++|++|++++|..+..+|.++ ++++|+.|.
T Consensus 633 l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~ 710 (1153)
T PLN03210 633 LTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLN 710 (1153)
T ss_pred CCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEe
Confidence 7777777777664 55666 36677777777777777777777777777777777777777777777655 577777776
Q ss_pred ceEecCCCCcccc---------ccccccccc---ccccCCCeeEEcCCCCCC---ChhhhhHhcccCCCCCCeEEEEEcC
Q 001998 692 EFVVSSTGGKYCT---------KACKVEGLR---QLNHLRGTLRIRGLGNVT---DVEEAEKADLEKKKNIVGLELRFDK 756 (984)
Q Consensus 692 ~~~~~~~~~~~~~---------~~~~l~~L~---~L~~L~~~L~i~~~~~~~---~~~~~~~~~l~~~~~L~~L~L~~~~ 756 (984)
+.++......+.. ....+..++ .+.+|. .|.+..+.... .............++|+.|+|+.|.
T Consensus 711 Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~-~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~ 789 (1153)
T PLN03210 711 LSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLD-ELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIP 789 (1153)
T ss_pred CCCCCCccccccccCCcCeeecCCCccccccccccccccc-cccccccchhhccccccccchhhhhccccchheeCCCCC
Confidence 6554322100000 000000000 111111 11111110000 0000000001123567777776553
Q ss_pred CcccccCcCchhhccHHHHhhcCCCCCCCCeEEEeecCCCCCCCchhhcCCCCcEEEEeCcCCCCcCCCCCCCCCcceee
Q 001998 757 EEAATEGINEENEINHQAISEALRPPPDLEALEIMHYKGQTAFPSWIVSLNKLKKLKLSSCCKCEIMPPLGALPSLEILQ 836 (984)
Q Consensus 757 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~l~~l~~Lp~L~~L~ 836 (984)
.. ..++..+..+++|+.|+|++|...+.+|..+ ++++|+.|+|++|..+..+|.+ .++|+.|+
T Consensus 790 ~l--------------~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~--~~nL~~L~ 852 (1153)
T PLN03210 790 SL--------------VELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI--STNISDLN 852 (1153)
T ss_pred Cc--------------cccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc--ccccCEeE
Confidence 21 2356677889999999999997766688876 7999999999999888877764 47899999
Q ss_pred eccccCceEecceecCccCCCCCCCCCCccCcccccccccccccCCCCcccccCCCCcccCCcccEEeeecCcCCCCCC
Q 001998 837 IQRMESVKRVGVEFLGIESFNDYAPSSSLSLTAFPKLKELTLFHLDGCEEWDFGKEDVIIMPQLCYLDIRFCRKLKSLP 915 (984)
Q Consensus 837 L~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp 915 (984)
|+++. ++.++.. +..+++|+.|.+.+|+++...... ...+++|+.|++++|+.+..++
T Consensus 853 Ls~n~-i~~iP~s-----------------i~~l~~L~~L~L~~C~~L~~l~~~---~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 853 LSRTG-IEEVPWW-----------------IEKFSNLSFLDMNGCNNLQRVSLN---ISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred CCCCC-CccChHH-----------------HhcCCCCCEEECCCCCCcCccCcc---cccccCCCeeecCCCccccccc
Confidence 98865 5444421 457899999999998888765443 3468999999999999887654
No 11
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.80 E-value=1.4e-20 Score=200.97 Aligned_cols=341 Identities=18% Similarity=0.195 Sum_probs=241.7
Q ss_pred cceeEEEEEecCcccccccccCCCceeEEeccCCCcchhhhHHhhhccccccee-cCCCCccccCcc-cccccCccceEE
Q 001998 543 DKLRHSILVLDKVASFPVSIFNAKKLRSLLIHSPLEVLSPVLKGLFDHLTYGED-DGGENTVHDIPR-EIEKLIHLRSLR 620 (984)
Q Consensus 543 ~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lrv-~l~~~~i~~lp~-~i~~L~~Lr~L~ 620 (984)
.++..+.+..+.+..+|.-.....+|..|++.+|. +..+..+.++-+..||+ |++.|.|.++|. ++..=.++++|+
T Consensus 102 ~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~--I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~ 179 (873)
T KOG4194|consen 102 PNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNL--ISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLN 179 (873)
T ss_pred CcceeeeeccchhhhcccccccccceeEEeeeccc--cccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEe
Confidence 35566666666666666555566678888888876 44444556788889999 999999999874 566778999999
Q ss_pred ecCCCccccch-hhccCCcccEEeccccccccccc-ccccCCCCCCeEEeccCCCcccC-CccCCCCCCCCcCCceEecC
Q 001998 621 LAGLKIEELPE-TCCKLFNLQTLDINECYRLKRLP-QGVGSLVNLRHLVVSLNGDLDYL-PKGVERLTSLRTLREFVVSS 697 (984)
Q Consensus 621 L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lP-~~i~~L~~L~~L~l~~~~~l~~~-p~~i~~l~~L~~L~~~~~~~ 697 (984)
|++|.|+.+.. .+.+|.+|.+|.|+.|+ ++.+| ..+.+|++|+.|++..| .+..+ --.|..|.+|+.|.+..++.
T Consensus 180 La~N~It~l~~~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN-~irive~ltFqgL~Sl~nlklqrN~I 257 (873)
T KOG4194|consen 180 LASNRITTLETGHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNRN-RIRIVEGLTFQGLPSLQNLKLQRNDI 257 (873)
T ss_pred eccccccccccccccccchheeeecccCc-ccccCHHHhhhcchhhhhhcccc-ceeeehhhhhcCchhhhhhhhhhcCc
Confidence 99999998754 78888999999999998 88888 45677999999999988 44433 22377889999988877654
Q ss_pred CCCcccccccccccccccccCCCeeEEcCCCCCCChhhhhHhcccCCCCCCeEEEEEcCCcccccCcCchhhccHHHHhh
Q 001998 698 TGGKYCTKACKVEGLRQLNHLRGTLRIRGLGNVTDVEEAEKADLEKKKNIVGLELRFDKEEAATEGINEENEINHQAISE 777 (984)
Q Consensus 698 ~~~~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~ 777 (984)
... ....+-.+.++.+|. |. ...+.......+-++..|+.|++++|.+... ..+
T Consensus 258 ~kL----~DG~Fy~l~kme~l~--L~------~N~l~~vn~g~lfgLt~L~~L~lS~NaI~ri--------------h~d 311 (873)
T KOG4194|consen 258 SKL----DDGAFYGLEKMEHLN--LE------TNRLQAVNEGWLFGLTSLEQLDLSYNAIQRI--------------HID 311 (873)
T ss_pred ccc----cCcceeeecccceee--cc------cchhhhhhcccccccchhhhhccchhhhhee--------------ecc
Confidence 321 122333344444221 11 1233444556677889999999999876433 345
Q ss_pred cCCCCCCCCeEEEeecCCCCCCCchhhcCCCCcEEEEeCcCCCCcCC-CCCCCCCcceeeeccccCceEecceecCccCC
Q 001998 778 ALRPPPDLEALEIMHYKGQTAFPSWIVSLNKLKKLKLSSCCKCEIMP-PLGALPSLEILQIQRMESVKRVGVEFLGIESF 856 (984)
Q Consensus 778 ~l~~~~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~l~-~l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~~ 856 (984)
++.-.++|++|+|+.|.+..--+..+..|+.|+.|.|+.|...-.-. .|..+.+|+.|+|++|..--.+.+.. .
T Consensus 312 ~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa---~-- 386 (873)
T KOG4194|consen 312 SWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAA---V-- 386 (873)
T ss_pred hhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecch---h--
Confidence 66778999999999999988334567789999999999996543222 27889999999999887333332211 1
Q ss_pred CCCCCCCCccCcccccccccccccCCCCcccccCCCCcccCCcccEEeeecCcCCCCCCcCCCCCCCcCeEEecc
Q 001998 857 NDYAPSSSLSLTAFPKLKELTLFHLDGCEEWDFGKEDVIIMPQLCYLDIRFCRKLKSLPDQLLQSSTLEKLRIIR 931 (984)
Q Consensus 857 ~~l~~~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~i~~ 931 (984)
...++|+|++|.+.+. ..-.+...+|..+++|++|+|.+|+.-..=|..+..+ .|++|.+..
T Consensus 387 ---------~f~gl~~LrkL~l~gN---qlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 387 ---------AFNGLPSLRKLRLTGN---QLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred ---------hhccchhhhheeecCc---eeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence 1346788888887653 3334455667889999999999998443345555555 888887653
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.79 E-value=1.5e-22 Score=206.77 Aligned_cols=402 Identities=20% Similarity=0.255 Sum_probs=266.5
Q ss_pred eeEEEEEecCcccccccccCCCceeEEeccCCCcchhhhHHhhhccccccee-cCCCCccccCcccccccCccceEEecC
Q 001998 545 LRHSILVLDKVASFPVSIFNAKKLRSLLIHSPLEVLSPVLKGLFDHLTYGED-DGGENTVHDIPREIEKLIHLRSLRLAG 623 (984)
Q Consensus 545 ~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lrv-~l~~~~i~~lp~~i~~L~~Lr~L~L~~ 623 (984)
+..+.+..+++..+...+.++..|.+|.+..+. ... ++..+..+..+.- +.++|.+.++|..++.+..|+.|+.+.
T Consensus 47 l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~--l~~-lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~ 123 (565)
T KOG0472|consen 47 LQKLILSHNDLEVLREDLKNLACLTVLNVHDNK--LSQ-LPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSS 123 (565)
T ss_pred hhhhhhccCchhhccHhhhcccceeEEEeccch--hhh-CCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccc
Confidence 445566667776666777888889999998886 333 3344566666555 888899999999999999999999999
Q ss_pred CCccccchhhccCCcccEEecccccccccccccccCCCCCCeEEeccCCCcccCCccCCCCCCCCcCCceEecCCCCccc
Q 001998 624 LKIEELPETCCKLFNLQTLDINECYRLKRLPQGVGSLVNLRHLVVSLNGDLDYLPKGVERLTSLRTLREFVVSSTGGKYC 703 (984)
Q Consensus 624 ~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~ 703 (984)
|.+.++|++++.+..|+.|+..+|. +..+|.++.++.+|..|++.+| .+...|+..-+|+.|++|+...+.....
T Consensus 124 n~~~el~~~i~~~~~l~dl~~~~N~-i~slp~~~~~~~~l~~l~~~~n-~l~~l~~~~i~m~~L~~ld~~~N~L~tl--- 198 (565)
T KOG0472|consen 124 NELKELPDSIGRLLDLEDLDATNNQ-ISSLPEDMVNLSKLSKLDLEGN-KLKALPENHIAMKRLKHLDCNSNLLETL--- 198 (565)
T ss_pred cceeecCchHHHHhhhhhhhccccc-cccCchHHHHHHHHHHhhcccc-chhhCCHHHHHHHHHHhcccchhhhhcC---
Confidence 9999999999999999999999887 8899999999999999999988 6677777666699999998765544321
Q ss_pred ccccccccccccccCCCeeEEcCCCCCCChhhhhHhcccCCCCCCeEEEEEcCCcccccCcCchhhccHHHHhhcCCCCC
Q 001998 704 TKACKVEGLRQLNHLRGTLRIRGLGNVTDVEEAEKADLEKKKNIVGLELRFDKEEAATEGINEENEINHQAISEALRPPP 783 (984)
Q Consensus 704 ~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 783 (984)
...+..+..|. .|.+.. ....+...+.+|..|+.|+++.|..... -.+....++
T Consensus 199 --P~~lg~l~~L~----~LyL~~------Nki~~lPef~gcs~L~Elh~g~N~i~~l--------------pae~~~~L~ 252 (565)
T KOG0472|consen 199 --PPELGGLESLE----LLYLRR------NKIRFLPEFPGCSLLKELHVGENQIEML--------------PAEHLKHLN 252 (565)
T ss_pred --ChhhcchhhhH----HHHhhh------cccccCCCCCccHHHHHHHhcccHHHhh--------------HHHHhcccc
Confidence 22222222222 111111 0011112456777777777776654211 123345789
Q ss_pred CCCeEEEeecCCCCCCCchhhcCCCCcEEEEeCcCCCCcCCCCCCCCCcceeeeccccCceEecceecCccC--------
Q 001998 784 DLEALEIMHYKGQTAFPSWIVSLNKLKKLKLSSCCKCEIMPPLGALPSLEILQIQRMESVKRVGVEFLGIES-------- 855 (984)
Q Consensus 784 ~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~l~~l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~-------- 855 (984)
+|..|++++|++.. +|..+.-+.+|.+|++++|....-.+.+|++ +|+.|.+.+|+ +..+..++...+.
T Consensus 253 ~l~vLDLRdNklke-~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNP-lrTiRr~ii~~gT~~vLKyLr 329 (565)
T KOG0472|consen 253 SLLVLDLRDNKLKE-VPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNP-LRTIRREIISKGTQEVLKYLR 329 (565)
T ss_pred cceeeecccccccc-CchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCc-hHHHHHHHHcccHHHHHHHHH
Confidence 99999999999988 9999999999999999999877766669999 99999999987 3333221111100
Q ss_pred -------C-CCCCCC---CCccCcccc------cccccccccC-------------------------------------
Q 001998 856 -------F-NDYAPS---SSLSLTAFP------KLKELTLFHL------------------------------------- 881 (984)
Q Consensus 856 -------~-~~l~~~---~~~~~~~f~------~L~~L~l~~l------------------------------------- 881 (984)
+ +...+. .......|| +.+.|.+++.
T Consensus 330 s~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~ 409 (565)
T KOG0472|consen 330 SKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVE 409 (565)
T ss_pred HhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHH
Confidence 0 000000 000011122 2233322210
Q ss_pred ---------CCCcccccCCCCcccCCcccEEeeecCcCCCCCCcCCCCCCCcCeEEeccCcchH--Hh------------
Q 001998 882 ---------DGCEEWDFGKEDVIIMPQLCYLDIRFCRKLKSLPDQLLQSSTLEKLRIIRAPILR--ER------------ 938 (984)
Q Consensus 882 ---------~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~i~~c~~l~--~~------------ 938 (984)
......++.+..+..+++|..|++++|+ +.++|..++.+-.|+.|+|+.|..-. +.
T Consensus 410 lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~-Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtlla 488 (565)
T KOG0472|consen 410 LKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNL-LNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLA 488 (565)
T ss_pred HHHHHHHHHhhcCccccchHHHHhhhcceeeecccch-hhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHh
Confidence 0111122334445678888888888885 88888888888888888888763100 00
Q ss_pred ------------h-----------cc----CCCCCccccccccceeecCceeeeeeeccCCCCcccceeeecC
Q 001998 939 ------------F-----------KK----DTGEDWSKISHIRDIQIDHEYVQGFGFDNRTTGTSRSIQVLKR 984 (984)
Q Consensus 939 ------------~-----------~~----~~~~~~~~i~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 984 (984)
. +. ..++...++..+.++.+.+|.+...+.-...+||...+.|+|.
T Consensus 489 s~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr~Pr~~iLmkgT~aiL~ylrd 561 (565)
T KOG0472|consen 489 SNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFRQPRHQILMKGTAAILSYLRD 561 (565)
T ss_pred ccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccCCCHHHHhccChHHHHHHhcc
Confidence 0 00 1112233455666777888888888888889999988888874
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.68 E-value=6.8e-19 Score=198.53 Aligned_cols=140 Identities=20% Similarity=0.208 Sum_probs=71.7
Q ss_pred eeEEEEEecCcccccccccCCCceeEEeccCCCcchhhhHHhhhccccccee-cCCCCccccCcccccccCccceEEecC
Q 001998 545 LRHSILVLDKVASFPVSIFNAKKLRSLLIHSPLEVLSPVLKGLFDHLTYGED-DGGENTVHDIPREIEKLIHLRSLRLAG 623 (984)
Q Consensus 545 ~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lrv-~l~~~~i~~lp~~i~~L~~Lr~L~L~~ 623 (984)
+.++.+.++.+..||..+..+.+|+.|.++.|. +.. .+....+++.|.. .+.+|.+..+|.++..+++|+||++++
T Consensus 47 L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~--i~~-vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~ 123 (1081)
T KOG0618|consen 47 LKSLDLSNNQISSFPIQITLLSHLRQLNLSRNY--IRS-VPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSF 123 (1081)
T ss_pred eEEeeccccccccCCchhhhHHHHhhcccchhh--Hhh-CchhhhhhhcchhheeccchhhcCchhHHhhhcccccccch
Confidence 455555555555555555555555555555554 222 2233445555555 555555555555555555555555555
Q ss_pred CCccccchhhccCCcccEEecccccccccccccccCCCCCCeEEeccCCCcccCCccCCCCCCCCcCCceE
Q 001998 624 LKIEELPETCCKLFNLQTLDINECYRLKRLPQGVGSLVNLRHLVVSLNGDLDYLPKGVERLTSLRTLREFV 694 (984)
Q Consensus 624 ~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~ 694 (984)
|.+..+|.-+..+..+..++.++|..+..++... .+++++..+.....++.+++.++. +|++..
T Consensus 124 N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~-----ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~ 187 (1081)
T KOG0618|consen 124 NHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTS-----IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRY 187 (1081)
T ss_pred hccCCCchhHHhhhHHHHHhhhcchhhhhhcccc-----chhhhhhhhhcccchhcchhhhhe--eeeccc
Confidence 5555555555555555555555553333333211 445555555444455555555555 344433
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.65 E-value=1.5e-18 Score=195.72 Aligned_cols=285 Identities=24% Similarity=0.325 Sum_probs=161.1
Q ss_pred cCcccccccccCCCceeEEeccCCCcchhhhHHhhhccccccee-cCCCCccccCcccccccCccceEEecCCCccccch
Q 001998 553 DKVASFPVSIFNAKKLRSLLIHSPLEVLSPVLKGLFDHLTYGED-DGGENTVHDIPREIEKLIHLRSLRLAGLKIEELPE 631 (984)
Q Consensus 553 ~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lrv-~l~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~ 631 (984)
.....+|..+.....+..|++..|...... -++..+.-.|+. |+++|.+...|..|..+.+|+.|+++.|.|..+|.
T Consensus 8 ~~l~~ip~~i~~~~~~~~ln~~~N~~l~~p--l~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~ 85 (1081)
T KOG0618|consen 8 EQLELIPEQILNNEALQILNLRRNSLLSRP--LEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPS 85 (1081)
T ss_pred ccCcccchhhccHHHHHhhhccccccccCc--hHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCch
Confidence 344444555555555667776666421111 222333333666 88888888888888888888888888888888888
Q ss_pred hhccCCcccEEecccccccccccccccCCCCCCeEEeccCCCcccCCccCCCCCCCCcCCceEecCCCCccccccccccc
Q 001998 632 TCCKLFNLQTLDINECYRLKRLPQGVGSLVNLRHLVVSLNGDLDYLPKGVERLTSLRTLREFVVSSTGGKYCTKACKVEG 711 (984)
Q Consensus 632 ~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~ 711 (984)
+++++.+|++|+|.+|. +..+|.++..+++|++|++++| ....+|.-+..++.+..+...++...... . ...+..
T Consensus 86 s~~~~~~l~~lnL~~n~-l~~lP~~~~~lknl~~LdlS~N-~f~~~Pl~i~~lt~~~~~~~s~N~~~~~l-g--~~~ik~ 160 (1081)
T KOG0618|consen 86 SCSNMRNLQYLNLKNNR-LQSLPASISELKNLQYLDLSFN-HFGPIPLVIEVLTAEEELAASNNEKIQRL-G--QTSIKK 160 (1081)
T ss_pred hhhhhhcchhheeccch-hhcCchhHHhhhcccccccchh-ccCCCchhHHhhhHHHHHhhhcchhhhhh-c--cccchh
Confidence 88888888888888776 8888888888888888888888 55667776766666666655544111000 0 000000
Q ss_pred c-cccccCCCeeEE--cCCCC---CCChhhhhHhcccCCCCCCeEEEEEcCCcccccC------cCchhhccHHHHhhcC
Q 001998 712 L-RQLNHLRGTLRI--RGLGN---VTDVEEAEKADLEKKKNIVGLELRFDKEEAATEG------INEENEINHQAISEAL 779 (984)
Q Consensus 712 L-~~L~~L~~~L~i--~~~~~---~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~------~~~~~~~~~~~~~~~l 779 (984)
+ -+++.+.+.+.+ .++.+ +... ......+..+.+|+.|....|........ +....+... ....-
T Consensus 161 ~~l~~n~l~~~~~~~i~~l~~~ldLr~N-~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~--~~~~~ 237 (1081)
T KOG0618|consen 161 LDLRLNVLGGSFLIDIYNLTHQLDLRYN-EMEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLT--TLDVH 237 (1081)
T ss_pred hhhhhhhcccchhcchhhhheeeecccc-hhhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcce--eeccc
Confidence 0 000111111110 00000 0000 00123334444555444444333211000 000000000 11112
Q ss_pred CCCCCCCeEEEeecCCCCCCCchhhcCCCCcEEEEeCcCCC----------------------CcCCC-CCCCCCcceee
Q 001998 780 RPPPDLEALEIMHYKGQTAFPSWIVSLNKLKKLKLSSCCKC----------------------EIMPP-LGALPSLEILQ 836 (984)
Q Consensus 780 ~~~~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~----------------------~~l~~-l~~Lp~L~~L~ 836 (984)
..+.+|++++++.+.+.. +|.|++.+.+|+.|....|... +-+|. ++++.+|++|+
T Consensus 238 p~p~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLd 316 (1081)
T KOG0618|consen 238 PVPLNLQYLDISHNNLSN-LPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLD 316 (1081)
T ss_pred cccccceeeecchhhhhc-chHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeee
Confidence 335688889998888887 8888888888888777765421 22233 66688999999
Q ss_pred eccccCceEecce
Q 001998 837 IQRMESVKRVGVE 849 (984)
Q Consensus 837 L~~~~~l~~~~~~ 849 (984)
|..|. +..++..
T Consensus 317 L~~N~-L~~lp~~ 328 (1081)
T KOG0618|consen 317 LQSNN-LPSLPDN 328 (1081)
T ss_pred ehhcc-ccccchH
Confidence 98876 5555543
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.47 E-value=2.6e-13 Score=159.55 Aligned_cols=36 Identities=22% Similarity=0.360 Sum_probs=20.6
Q ss_pred CcccEEeeecCcCCCCCCcCCCCCCCcCeEEeccCcc
Q 001998 898 PQLCYLDIRFCRKLKSLPDQLLQSSTLEKLRIIRAPI 934 (984)
Q Consensus 898 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~i~~c~~ 934 (984)
.+|+.|++++|. ++.+|..+..+++|+.|++++||.
T Consensus 422 ~~L~~L~Ls~Nq-Lt~LP~sl~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 422 SGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNPL 457 (788)
T ss_pred hhhhhhhhccCc-ccccChHHhhccCCCeEECCCCCC
Confidence 345556666553 555665555566666666666653
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.42 E-value=3.3e-13 Score=159.90 Aligned_cols=111 Identities=23% Similarity=0.294 Sum_probs=52.6
Q ss_pred EEEEEecCcccccccccCCCceeEEeccCCCcchhhhHHhhhccccccee-cCCCCccccCcccccccCccceEEecCCC
Q 001998 547 HSILVLDKVASFPVSIFNAKKLRSLLIHSPLEVLSPVLKGLFDHLTYGED-DGGENTVHDIPREIEKLIHLRSLRLAGLK 625 (984)
Q Consensus 547 ~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lrv-~l~~~~i~~lp~~i~~L~~Lr~L~L~~~~ 625 (984)
.+.+...++..+|..+. ++|+.|++.+|. +...+..++ ..|+. ++++|.+..+|..+. .+|+.|+|++|.
T Consensus 182 ~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~--LtsLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~ 252 (754)
T PRK15370 182 ELRLKILGLTTIPACIP--EQITTLILDNNE--LKSLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELSINR 252 (754)
T ss_pred EEEeCCCCcCcCCcccc--cCCcEEEecCCC--CCcCChhhc---cCCCEEECCCCccccCChhhh--ccccEEECcCCc
Confidence 34444444444454332 356666666554 222111211 23444 555555555554332 245555555555
Q ss_pred ccccchhhccCCcccEEecccccccccccccccCCCCCCeEEeccC
Q 001998 626 IEELPETCCKLFNLQTLDINECYRLKRLPQGVGSLVNLRHLVVSLN 671 (984)
Q Consensus 626 i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~ 671 (984)
+..+|..+. .+|++|++++|. +..+|..+. ++|++|++++|
T Consensus 253 L~~LP~~l~--s~L~~L~Ls~N~-L~~LP~~l~--~sL~~L~Ls~N 293 (754)
T PRK15370 253 ITELPERLP--SALQSLDLFHNK-ISCLPENLP--EELRYLSVYDN 293 (754)
T ss_pred cCcCChhHh--CCCCEEECcCCc-cCccccccC--CCCcEEECCCC
Confidence 555555443 345555555544 445554432 35555555554
No 17
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.42 E-value=3.7e-15 Score=135.34 Aligned_cols=166 Identities=22% Similarity=0.329 Sum_probs=113.5
Q ss_pred ccccCccceEEecCCCccccchhhccCCcccEEecccccccccccccccCCCCCCeEEeccCCCcccCCccCCCCCCCCc
Q 001998 610 IEKLIHLRSLRLAGLKIEELPETCCKLFNLQTLDINECYRLKRLPQGVGSLVNLRHLVVSLNGDLDYLPKGVERLTSLRT 689 (984)
Q Consensus 610 i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~ 689 (984)
+.++.+...|.||+|+++.+|+.|..|.||+.|++++|. ++++|.+|..|++|++|+++-| .+..+|.+++.++.|+.
T Consensus 29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~lev 106 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALEV 106 (264)
T ss_pred ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchh-hhhcCccccCCCchhhh
Confidence 556677777888888888888888888888888888877 8888888888888888888766 66778888888888888
Q ss_pred CCceEecCCCCcccccccccccccccccCCCeeEEcCCCCCCChhhhhHhcccCCCCCCeEEEEEcCCcccccCcCchhh
Q 001998 690 LREFVVSSTGGKYCTKACKVEGLRQLNHLRGTLRIRGLGNVTDVEEAEKADLEKKKNIVGLELRFDKEEAATEGINEENE 769 (984)
Q Consensus 690 L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~ 769 (984)
|++..+.... +.|-| ++-.+..|+.|.|+.|.+
T Consensus 107 ldltynnl~e----------------~~lpg-------------------nff~m~tlralyl~dndf------------ 139 (264)
T KOG0617|consen 107 LDLTYNNLNE----------------NSLPG-------------------NFFYMTTLRALYLGDNDF------------ 139 (264)
T ss_pred hhcccccccc----------------ccCCc-------------------chhHHHHHHHHHhcCCCc------------
Confidence 8776544332 11111 111122334444444433
Q ss_pred ccHHHHhhcCCCCCCCCeEEEeecCCCCCCCchhhcCCCCcEEEEeCcCCCCcCCCCCC
Q 001998 770 INHQAISEALRPPPDLEALEIMHYKGQTAFPSWIVSLNKLKKLKLSSCCKCEIMPPLGA 828 (984)
Q Consensus 770 ~~~~~~~~~l~~~~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~l~~l~~ 828 (984)
+.++...+.+++|+.|.++.|...+ +|..++.++.|++|++.+|......|.+++
T Consensus 140 ---e~lp~dvg~lt~lqil~lrdndll~-lpkeig~lt~lrelhiqgnrl~vlppel~~ 194 (264)
T KOG0617|consen 140 ---EILPPDVGKLTNLQILSLRDNDLLS-LPKEIGDLTRLRELHIQGNRLTVLPPELAN 194 (264)
T ss_pred ---ccCChhhhhhcceeEEeeccCchhh-CcHHHHHHHHHHHHhcccceeeecChhhhh
Confidence 2245556667778888888887777 888888888888888887765544444443
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.38 E-value=1.8e-12 Score=152.60 Aligned_cols=254 Identities=21% Similarity=0.201 Sum_probs=166.7
Q ss_pred cCCCCccccCcccccccCccceEEecCCCccccchhhccCCcccEEecccccccccccccccCCCCCCeEEeccCCCccc
Q 001998 597 DGGENTVHDIPREIEKLIHLRSLRLAGLKIEELPETCCKLFNLQTLDINECYRLKRLPQGVGSLVNLRHLVVSLNGDLDY 676 (984)
Q Consensus 597 ~l~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~ 676 (984)
+++++.+..+|..+. .+|+.|++++|.++.+|.. +++|++|++++|. ++.+|.. .++|++|++++| .+..
T Consensus 207 dLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~-LtsLP~l---p~sL~~L~Ls~N-~L~~ 276 (788)
T PRK15387 207 NVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQ-LTSLPVL---PPGLLELSIFSN-PLTH 276 (788)
T ss_pred EcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCc-cCcccCc---ccccceeeccCC-chhh
Confidence 788888888888776 4889999999999988863 5789999999886 8888863 467888888888 5666
Q ss_pred CCccCCCCCCCCcCCceEecCCCCcccccccccccccccccCCCeeEEcCCCCCCChhhhhHhcccCCCCCCeEEEEEcC
Q 001998 677 LPKGVERLTSLRTLREFVVSSTGGKYCTKACKVEGLRQLNHLRGTLRIRGLGNVTDVEEAEKADLEKKKNIVGLELRFDK 756 (984)
Q Consensus 677 ~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~ 756 (984)
+|... ++|+.|++..+... . + + ...++|+.|+++.|.
T Consensus 277 Lp~lp---~~L~~L~Ls~N~Lt------------~----------L--------P----------~~p~~L~~LdLS~N~ 313 (788)
T PRK15387 277 LPALP---SGLCKLWIFGNQLT------------S----------L--------P----------VLPPGLQELSVSDNQ 313 (788)
T ss_pred hhhch---hhcCEEECcCCccc------------c----------c--------c----------ccccccceeECCCCc
Confidence 66432 34555544322111 0 0 0 012467778887775
Q ss_pred CcccccCcCchhhccHHHHhhcCCCCCCCCeEEEeecCCCCCCCchhhcCCCCcEEEEeCcCCCCcCCCCCCCCCcceee
Q 001998 757 EEAATEGINEENEINHQAISEALRPPPDLEALEIMHYKGQTAFPSWIVSLNKLKKLKLSSCCKCEIMPPLGALPSLEILQ 836 (984)
Q Consensus 757 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~l~~l~~Lp~L~~L~ 836 (984)
+... +. .+.+|+.|++++|.+.. +|.. ..+|+.|+|++|... .+|.+ .++|+.|+
T Consensus 314 L~~L---------------p~---lp~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls-~LP~l--p~~L~~L~ 368 (788)
T PRK15387 314 LASL---------------PA---LPSELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLA-SLPTL--PSELYKLW 368 (788)
T ss_pred cccC---------------CC---CcccccccccccCcccc-cccc---ccccceEecCCCccC-CCCCC--Ccccceeh
Confidence 5321 11 23568888888888776 7753 257888999888554 35543 35788888
Q ss_pred eccccCceEecceecCccCCCCCCCCCCccCcccccccccccccCCCCcccccCCCCcccCCcccEEeeecCcCCCCCCc
Q 001998 837 IQRMESVKRVGVEFLGIESFNDYAPSSSLSLTAFPKLKELTLFHLDGCEEWDFGKEDVIIMPQLCYLDIRFCRKLKSLPD 916 (984)
Q Consensus 837 L~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~ 916 (984)
+++|. +..++. ..++|+.|.+.+. .+.. + +. ..++|+.|++++|. +..+|.
T Consensus 369 Ls~N~-L~~LP~--------------------l~~~L~~LdLs~N-~Lt~--L-P~---l~s~L~~LdLS~N~-LssIP~ 419 (788)
T PRK15387 369 AYNNR-LTSLPA--------------------LPSGLKELIVSGN-RLTS--L-PV---LPSELKELMVSGNR-LTSLPM 419 (788)
T ss_pred hhccc-cccCcc--------------------cccccceEEecCC-cccC--C-CC---cccCCCEEEccCCc-CCCCCc
Confidence 87664 333221 1245777777653 2222 1 11 24789999999996 778886
Q ss_pred CCCCCCCcCeEEeccCcchHHhhccCCCCCccccccccceeecCceeeee
Q 001998 917 QLLQSSTLEKLRIIRAPILRERFKKDTGEDWSKISHIRDIQIDHEYVQGF 966 (984)
Q Consensus 917 ~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~i~~i~~l~~~~~~~~~~ 966 (984)
. +.+|+.|++++|.. . ..+..+..+.++..+.+.+|.+.+.
T Consensus 420 l---~~~L~~L~Ls~NqL-t-----~LP~sl~~L~~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 420 L---PSGLLSLSVYRNQL-T-----RLPESLIHLSSETTVNLEGNPLSER 460 (788)
T ss_pred c---hhhhhhhhhccCcc-c-----ccChHHhhccCCCeEECCCCCCCch
Confidence 4 35788999998874 2 1233455667778888888877654
No 19
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.37 E-value=5.7e-14 Score=144.51 Aligned_cols=129 Identities=19% Similarity=0.222 Sum_probs=87.4
Q ss_pred cccceeEEEEEecCcccccc-cccCCCceeEEeccCCCcchhhhHHhhhccccccee--cCCCCccccCcc-cccccCcc
Q 001998 541 SQDKLRHSILVLDKVASFPV-SIFNAKKLRSLLIHSPLEVLSPVLKGLFDHLTYGED--DGGENTVHDIPR-EIEKLIHL 616 (984)
Q Consensus 541 ~~~~~r~l~l~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lrv--~l~~~~i~~lp~-~i~~L~~L 616 (984)
.+...-.+.+..+.+..+|. +|..+++||.|+++.|. +..+-+++|.+++.|-. +.++|.|+.+|+ .|++|..|
T Consensus 65 LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~--Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~sl 142 (498)
T KOG4237|consen 65 LPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNN--ISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSL 142 (498)
T ss_pred CCCcceEEEeccCCcccCChhhccchhhhceecccccc--hhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHH
Confidence 45556666777777776654 46677777777777776 55556677777776655 666677777774 46677777
Q ss_pred ceEEecCCCcccc-chhhccCCcccEEecccccccccccc-cccCCCCCCeEEeccCC
Q 001998 617 RSLRLAGLKIEEL-PETCCKLFNLQTLDINECYRLKRLPQ-GVGSLVNLRHLVVSLNG 672 (984)
Q Consensus 617 r~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lP~-~i~~L~~L~~L~l~~~~ 672 (984)
+.|.+.-|++.-+ ...+..|++|..|.+.+|. ++.++. .+..+.+++++.+..|.
T Consensus 143 qrLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 143 QRLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred HHHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCc
Confidence 7777777777643 3466677777777777766 666665 56677777777766553
No 20
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.34 E-value=7.8e-11 Score=149.38 Aligned_cols=293 Identities=16% Similarity=0.205 Sum_probs=180.3
Q ss_pred CCcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEec-CCCCHHHHHH
Q 001998 178 VSEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVS-DPFDEFSVAK 256 (984)
Q Consensus 178 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s-~~~~~~~~~~ 256 (984)
...++-|+.-.+.+.. ....+++.|+|++|.||||++..+... ++.++|+++. ..-+...+..
T Consensus 13 ~~~~~~R~rl~~~l~~----------~~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~ 76 (903)
T PRK04841 13 LHNTVVRERLLAKLSG----------ANNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFAS 76 (903)
T ss_pred ccccCcchHHHHHHhc----------ccCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHH
Confidence 4567777765555532 125789999999999999999998752 2368999986 4456677777
Q ss_pred HHHHHhcCCCCC-------------cccHHHHHHHHHHHhC--CCceEEEEEcCCCCCcCChh-hHHHhhcCCCCCcEEE
Q 001998 257 AIIEELEGSATD-------------LHELNSLLRRIGANIA--GQKFFMVLDNLWTDDYRKWE-PFRNCLMNGLRGSKIL 320 (984)
Q Consensus 257 ~i~~~l~~~~~~-------------~~~~~~~~~~l~~~l~--~kr~LlVlDdvw~~~~~~~~-~l~~~l~~~~~gs~ii 320 (984)
.++..+...... ..+...+...+...+. +.+++|||||+...+..... .+...++....+.++|
T Consensus 77 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv 156 (903)
T PRK04841 77 YLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLV 156 (903)
T ss_pred HHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEE
Confidence 777777421111 0122333333333332 68999999999654333333 3444444455677899
Q ss_pred EEccchH---HHhhcCCCCeEeCC----CCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHHHHhh
Q 001998 321 LTTRKET---VARMMESTDIVYVQ----GLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLPLAAKTIGSLL 393 (984)
Q Consensus 321 iTtr~~~---v~~~~~~~~~~~l~----~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~~l 393 (984)
||||... ...........++. +|+.+|+.++|....... .. .+...+|.+.|+|.|+++..++..+
T Consensus 157 ~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~---~~----~~~~~~l~~~t~Gwp~~l~l~~~~~ 229 (903)
T PRK04841 157 VLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSP---IE----AAESSRLCDDVEGWATALQLIALSA 229 (903)
T ss_pred EEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCC---CC----HHHHHHHHHHhCChHHHHHHHHHHH
Confidence 9999842 11111112345555 999999999998654221 11 3445679999999999999988777
Q ss_pred ccCCC-HHHHHHHHhhhhhhhhh-hcccccchhh-ccccCCChhhhhhhhhcccCCCCCccChHHHHHHHHHcCCcCCCC
Q 001998 394 QFKRT-KEEWQSVLDSEMWQLEE-FERGLSAPLF-LSYNDLPFEIKRCFSYCAIFPKGSSLKKDELVKLWMAQGYIVPKG 470 (984)
Q Consensus 394 ~~~~~-~~~w~~~l~~~~~~~~~-~~~~~~~~l~-~sy~~L~~~~k~cfl~~~~fp~~~~i~~~~li~~Wiaeg~i~~~~ 470 (984)
..... ..... +.+.. ....+...+. -.++.||++.+..+...|+++ .++.+.+-.. ..
T Consensus 230 ~~~~~~~~~~~-------~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~---~~~~~l~~~l------~~--- 290 (903)
T PRK04841 230 RQNNSSLHDSA-------RRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR---SMNDALIVRV------TG--- 290 (903)
T ss_pred hhCCCchhhhh-------HhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc---cCCHHHHHHH------cC---
Confidence 54322 11100 11111 0112333332 237899999999999999997 3443322221 11
Q ss_pred CchHHHhHHHHHHHHhhcccccceecCCCCceeeEEechHHHHHHHHhh
Q 001998 471 NKEMEVIGLEYFDCLASRSFYQQFVKDDDNMVIGCTMHDVVHDFAQFLT 519 (984)
Q Consensus 471 ~~~~e~~~~~~~~~L~~r~l~~~~~~~~~~~~~~~~~Hdlv~~~~~~~~ 519 (984)
.+.+...+++|..++++...... .+ .+|++|++++++.....
T Consensus 291 ----~~~~~~~L~~l~~~~l~~~~~~~-~~--~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 291 ----EENGQMRLEELERQGLFIQRMDD-SG--EWFRYHPLFASFLRHRC 332 (903)
T ss_pred ----CCcHHHHHHHHHHCCCeeEeecC-CC--CEEehhHHHHHHHHHHH
Confidence 12246789999999987432211 11 34788999999987654
No 21
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.33 E-value=3.3e-13 Score=162.38 Aligned_cols=324 Identities=23% Similarity=0.283 Sum_probs=204.4
Q ss_pred CCCceeEEeccCCCcchhhhHHhhhccccccee-cCCCCc--cccCccc-ccccCccceEEecCCC-ccccchhhccCCc
Q 001998 564 NAKKLRSLLIHSPLEVLSPVLKGLFDHLTYGED-DGGENT--VHDIPRE-IEKLIHLRSLRLAGLK-IEELPETCCKLFN 638 (984)
Q Consensus 564 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lrv-~l~~~~--i~~lp~~-i~~L~~Lr~L~L~~~~-i~~lp~~i~~L~~ 638 (984)
+....|...+.++. +.. .... .....|+. -+.+|. +..++.. |..+++|++|||++|. +.++|++|++|.+
T Consensus 521 ~~~~~rr~s~~~~~--~~~-~~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~ 596 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNK--IEH-IAGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVH 596 (889)
T ss_pred chhheeEEEEeccc--hhh-ccCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhh
Confidence 44667777777665 111 1111 12223555 444443 5566554 6679999999999876 7899999999999
Q ss_pred ccEEecccccccccccccccCCCCCCeEEeccCCCcccCCccCCCCCCCCcCCceEecCCCCcccccccccccccccccC
Q 001998 639 LQTLDINECYRLKRLPQGVGSLVNLRHLVVSLNGDLDYLPKGVERLTSLRTLREFVVSSTGGKYCTKACKVEGLRQLNHL 718 (984)
Q Consensus 639 L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L 718 (984)
||+|+++++. +..+|.++++|++|.||++..+..+..+|..+..|++|++|.++..... .....+.++.+|.+|
T Consensus 597 LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~-----~~~~~l~el~~Le~L 670 (889)
T KOG4658|consen 597 LRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALS-----NDKLLLKELENLEHL 670 (889)
T ss_pred hhcccccCCC-ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccc-----cchhhHHhhhcccch
Confidence 9999999998 9999999999999999999999877777766777999999998765411 125566666666666
Q ss_pred CCeeEEcCCCCCCChhhhhHhcccCCCCCCeEEEEEcCCcccccCcCchhhccHHHHhhcCCCCCCCCeEEEeecCCCCC
Q 001998 719 RGTLRIRGLGNVTDVEEAEKADLEKKKNIVGLELRFDKEEAATEGINEENEINHQAISEALRPPPDLEALEIMHYKGQTA 798 (984)
Q Consensus 719 ~~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~ 798 (984)
. .+.+..... .....+..+..|.++...-... . .........+..+.+|+.|.+.+|.+...
T Consensus 671 ~-~ls~~~~s~------~~~e~l~~~~~L~~~~~~l~~~----------~-~~~~~~~~~~~~l~~L~~L~i~~~~~~e~ 732 (889)
T KOG4658|consen 671 E-NLSITISSV------LLLEDLLGMTRLRSLLQSLSIE----------G-CSKRTLISSLGSLGNLEELSILDCGISEI 732 (889)
T ss_pred h-hheeecchh------HhHhhhhhhHHHHHHhHhhhhc----------c-cccceeecccccccCcceEEEEcCCCchh
Confidence 6 454432211 0001112222222211110000 0 01122345567788999999999988653
Q ss_pred CCchhh-----c-CCCCcEEEEeCcCCCCcCCCCCCCCCcceeeeccccCceEecceecCccCCCCCCCCCCccCccccc
Q 001998 799 FPSWIV-----S-LNKLKKLKLSSCCKCEIMPPLGALPSLEILQIQRMESVKRVGVEFLGIESFNDYAPSSSLSLTAFPK 872 (984)
Q Consensus 799 lp~~l~-----~-l~~L~~L~L~~~~~~~~l~~l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~f~~ 872 (984)
...|.. . +++|..+.+.+|.....+.+....|+|+.|.+..|..++.+....-....... ..-.|++
T Consensus 733 ~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~-------~i~~f~~ 805 (889)
T KOG4658|consen 733 VIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKE-------LILPFNK 805 (889)
T ss_pred hcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhhhccc-------EEecccc
Confidence 333322 2 55777777777877766666666789999999988866654322111110000 0234566
Q ss_pred cccc-ccccCCCCcccccCCCCcccCCcccEEeeecCcCCCCCCcCCCCCCCcCeEEeccC
Q 001998 873 LKEL-TLFHLDGCEEWDFGKEDVIIMPQLCYLDIRFCRKLKSLPDQLLQSSTLEKLRIIRA 932 (984)
Q Consensus 873 L~~L-~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~i~~c 932 (984)
+..+ .+.+++++......+- .+++|+.+.+..||+++.+| .+.++.+.+|
T Consensus 806 ~~~l~~~~~l~~l~~i~~~~l---~~~~l~~~~ve~~p~l~~~P-------~~~~~~i~~~ 856 (889)
T KOG4658|consen 806 LEGLRMLCSLGGLPQLYWLPL---SFLKLEELIVEECPKLGKLP-------LLSTLTIVGC 856 (889)
T ss_pred cccceeeecCCCCceeEeccc---CccchhheehhcCcccccCc-------cccccceecc
Confidence 6666 4555555555544443 35669999999999887766 4666677776
No 22
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.31 E-value=6.2e-10 Score=126.32 Aligned_cols=318 Identities=13% Similarity=0.120 Sum_probs=186.7
Q ss_pred cccCCcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHH
Q 001998 175 LIDVSEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSV 254 (984)
Q Consensus 175 ~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~ 254 (984)
...+..++||+++++++...+...-. +.....+.|+|.+|+|||++++.++++.......-..+++++....+...+
T Consensus 26 ~~~P~~l~~Re~e~~~l~~~l~~~~~---~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~ 102 (394)
T PRK00411 26 DYVPENLPHREEQIEELAFALRPALR---GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAI 102 (394)
T ss_pred CCcCCCCCCHHHHHHHHHHHHHHHhC---CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHH
Confidence 33557899999999999999854321 123345789999999999999999985332222335677777777788899
Q ss_pred HHHHHHHhcCCC--CCcccHHHHHHHHHHHhC--CCceEEEEEcCCCCC-cCChhhHHHhhc--CCCCCcE--EEEEccc
Q 001998 255 AKAIIEELEGSA--TDLHELNSLLRRIGANIA--GQKFFMVLDNLWTDD-YRKWEPFRNCLM--NGLRGSK--ILLTTRK 325 (984)
Q Consensus 255 ~~~i~~~l~~~~--~~~~~~~~~~~~l~~~l~--~kr~LlVlDdvw~~~-~~~~~~l~~~l~--~~~~gs~--iiiTtr~ 325 (984)
+..|++++.+.. ......+++...+.+.+. +++.+||||+++.-. ....+.+...+. ....+++ +|.++..
T Consensus 103 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~ 182 (394)
T PRK00411 103 FSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSD 182 (394)
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECC
Confidence 999999997622 122345666677777665 456899999996532 112222332222 1223333 6666665
Q ss_pred hHHHhhcC-------CCCeEeCCCCChHhHHHHHHHHhcCC--CCCCCchhHHHHHHHHHHhcCCChHHHHHHHHhh--c
Q 001998 326 ETVARMME-------STDIVYVQGLSEPECWSLFRRFAFSG--RTPLECDQLEEIGRGIVRKCKGLPLAAKTIGSLL--Q 394 (984)
Q Consensus 326 ~~v~~~~~-------~~~~~~l~~L~~~~~~~lf~~~~~~~--~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~~l--~ 394 (984)
..+..... ....+.+.+++.++..+++..++... .....+..++.+++......|..+.|+.++-.+. +
T Consensus 183 ~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a 262 (394)
T PRK00411 183 LTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIA 262 (394)
T ss_pred cchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 44333221 12467899999999999998876322 1112333445544544444566888887765432 1
Q ss_pred --cC---CCHHHHHHHHhhhhhhhhhhcccccchhhccccCCChhhhhhhhhccc-CCC-CCccChHHHHH--HHHHcCC
Q 001998 395 --FK---RTKEEWQSVLDSEMWQLEEFERGLSAPLFLSYNDLPFEIKRCFSYCAI-FPK-GSSLKKDELVK--LWMAQGY 465 (984)
Q Consensus 395 --~~---~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl~~~~-fp~-~~~i~~~~li~--~Wiaeg~ 465 (984)
.. -+.+....+.+... .....-.+..||.+.|..+.-++. ... ...+....+.. ..+++.+
T Consensus 263 ~~~~~~~I~~~~v~~a~~~~~----------~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~ 332 (394)
T PRK00411 263 EREGSRKVTEEDVRKAYEKSE----------IVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEEL 332 (394)
T ss_pred HHcCCCCcCHHHHHHHHHHHH----------HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHc
Confidence 11 14556655554321 112334578899887775544432 221 13355555542 2333322
Q ss_pred cCCCCCchHHHhHHHHHHHHhhcccccceec--CCCCceeeEEec
Q 001998 466 IVPKGNKEMEVIGLEYFDCLASRSFYQQFVK--DDDNMVIGCTMH 508 (984)
Q Consensus 466 i~~~~~~~~e~~~~~~~~~L~~r~l~~~~~~--~~~~~~~~~~~H 508 (984)
-... .+ ...-..|+.+|...+++..... ...|..+.++.+
T Consensus 333 ~~~~--~~-~~~~~~~l~~L~~~glI~~~~~~~g~~g~~~~~~~~ 374 (394)
T PRK00411 333 GYEP--RT-HTRFYEYINKLDMLGIINTRYSGKGGRGRTRLISLS 374 (394)
T ss_pred CCCc--Cc-HHHHHHHHHHHHhcCCeEEEEecCCCCCCeEEEEec
Confidence 1110 01 1234569999999999986543 234555555544
No 23
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.30 E-value=1.6e-12 Score=154.12 Aligned_cols=224 Identities=21% Similarity=0.296 Sum_probs=156.3
Q ss_pred cccceeEEEEEecCcccccccccCCCceeEEeccCCCcchhhhHHhhhccccccee-cCCCCccccCcccccccCccceE
Q 001998 541 SQDKLRHSILVLDKVASFPVSIFNAKKLRSLLIHSPLEVLSPVLKGLFDHLTYGED-DGGENTVHDIPREIEKLIHLRSL 619 (984)
Q Consensus 541 ~~~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lrv-~l~~~~i~~lp~~i~~L~~Lr~L 619 (984)
.+..++.+.+.++.+..+|..+. ++|+.|++.+|. +..++.. + ...|+. ++++|.+..+|..+. .+|++|
T Consensus 197 Ip~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~--LtsLP~~-l--~~~L~~L~Ls~N~L~~LP~~l~--s~L~~L 267 (754)
T PRK15370 197 IPEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQ--LTSIPAT-L--PDTIQEMELSINRITELPERLP--SALQSL 267 (754)
T ss_pred cccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCc--cccCChh-h--hccccEEECcCCccCcCChhHh--CCCCEE
Confidence 45678999999999888877654 589999999986 3332222 2 236778 999999999998775 589999
Q ss_pred EecCCCccccchhhccCCcccEEecccccccccccccccCCCCCCeEEeccCCCcccCCccCCCCCCCCcCCceEecCCC
Q 001998 620 RLAGLKIEELPETCCKLFNLQTLDINECYRLKRLPQGVGSLVNLRHLVVSLNGDLDYLPKGVERLTSLRTLREFVVSSTG 699 (984)
Q Consensus 620 ~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~ 699 (984)
+|++|.++.+|..+. .+|++|++++|. ++.+|..+. ++|++|++++| .+..+|..+. ++|+.|.+..+....
T Consensus 268 ~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~lp--~sL~~L~Ls~N-~Lt~LP~~l~--~sL~~L~Ls~N~Lt~ 339 (754)
T PRK15370 268 DLFHNKISCLPENLP--EELRYLSVYDNS-IRTLPAHLP--SGITHLNVQSN-SLTALPETLP--PGLKTLEAGENALTS 339 (754)
T ss_pred ECcCCccCccccccC--CCCcEEECCCCc-cccCcccch--hhHHHHHhcCC-ccccCCcccc--ccceeccccCCcccc
Confidence 999999999998775 589999999997 888887653 57999999988 5666775442 566666554321110
Q ss_pred CcccccccccccccccccCCCeeEEcCCCCCCChhhhhHhcccCCCCCCeEEEEEcCCcccccCcCchhhccHHHHhhcC
Q 001998 700 GKYCTKACKVEGLRQLNHLRGTLRIRGLGNVTDVEEAEKADLEKKKNIVGLELRFDKEEAATEGINEENEINHQAISEAL 779 (984)
Q Consensus 700 ~~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~l 779 (984)
++ . .+ .++|+.|+++.|.+.. ++..+
T Consensus 340 ----------------------LP-----------~----~l--~~sL~~L~Ls~N~L~~---------------LP~~l 365 (754)
T PRK15370 340 ----------------------LP-----------A----SL--PPELQVLDVSKNQITV---------------LPETL 365 (754)
T ss_pred ----------------------CC-----------h----hh--cCcccEEECCCCCCCc---------------CChhh
Confidence 00 0 01 1467777777775432 12222
Q ss_pred CCCCCCCeEEEeecCCCCCCCchhhcCCCCcEEEEeCcCCCCcCCC-----CCCCCCcceeeecccc
Q 001998 780 RPPPDLEALEIMHYKGQTAFPSWIVSLNKLKKLKLSSCCKCEIMPP-----LGALPSLEILQIQRME 841 (984)
Q Consensus 780 ~~~~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~l~~-----l~~Lp~L~~L~L~~~~ 841 (984)
+++|++|+|++|.+.. +|..+. .+|+.|++++|... .+|. ++.+|++..|++.+|+
T Consensus 366 --p~~L~~LdLs~N~Lt~-LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 366 --PPTITTLDVSRNALTN-LPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred --cCCcCEEECCCCcCCC-CCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCC
Confidence 3578888888888776 777654 36888888887654 3332 3445777888887765
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.25 E-value=1.7e-13 Score=141.06 Aligned_cols=135 Identities=24% Similarity=0.241 Sum_probs=95.9
Q ss_pred cccccccCCCceeEEeccCCCcchhhhHHhhhccccccee-cCCCCccccC-cccccccCccceEEecC-CCccccch-h
Q 001998 557 SFPVSIFNAKKLRSLLIHSPLEVLSPVLKGLFDHLTYGED-DGGENTVHDI-PREIEKLIHLRSLRLAG-LKIEELPE-T 632 (984)
Q Consensus 557 ~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lrv-~l~~~~i~~l-p~~i~~L~~Lr~L~L~~-~~i~~lp~-~ 632 (984)
++|..+. +....+.+..|. +..+++.+|+.++.||. |+++|.|..| |++|..+..|-.|-+-+ |+|+.+|+ .
T Consensus 60 eVP~~LP--~~tveirLdqN~--I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~ 135 (498)
T KOG4237|consen 60 EVPANLP--PETVEIRLDQNQ--ISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGA 135 (498)
T ss_pred cCcccCC--CcceEEEeccCC--cccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhH
Confidence 4454443 234556666666 66667778888888888 8888888776 67788888877776666 77888886 5
Q ss_pred hccCCcccEEecccccccccccccccCCCCCCeEEeccCCCcccCCc-cCCCCCCCCcCCceEec
Q 001998 633 CCKLFNLQTLDINECYRLKRLPQGVGSLVNLRHLVVSLNGDLDYLPK-GVERLTSLRTLREFVVS 696 (984)
Q Consensus 633 i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~~p~-~i~~l~~L~~L~~~~~~ 696 (984)
+++|..||.|.+.-|..-......+..|++|..|.+..| .+..++. .+..+..++++.+..+.
T Consensus 136 F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 136 FGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred hhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCc
Confidence 778888888888877733334466788888888888777 5666666 47777778877765443
No 25
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.21 E-value=2.9e-13 Score=123.18 Aligned_cols=132 Identities=30% Similarity=0.361 Sum_probs=61.6
Q ss_pred eEEEEEecCcccccccccCCCceeEEeccCCCcchhhhHHhhhccccccee-cCCCCccc--cCcccccccCccceEEec
Q 001998 546 RHSILVLDKVASFPVSIFNAKKLRSLLIHSPLEVLSPVLKGLFDHLTYGED-DGGENTVH--DIPREIEKLIHLRSLRLA 622 (984)
Q Consensus 546 r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lrv-~l~~~~i~--~lp~~i~~L~~Lr~L~L~ 622 (984)
..+.+.++.++.+|.++..+++||.|++.-|. . ..++.-|..+..|.| |+++|++. .+|..|..|..||.|.|+
T Consensus 59 evln~~nnqie~lp~~issl~klr~lnvgmnr--l-~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~ 135 (264)
T KOG0617|consen 59 EVLNLSNNQIEELPTSISSLPKLRILNVGMNR--L-NILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLG 135 (264)
T ss_pred hhhhcccchhhhcChhhhhchhhhheecchhh--h-hcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhc
Confidence 33344444444444444444455544444332 1 112333444455555 55544432 244445455555555555
Q ss_pred CCCccccchhhccCCcccEEecccccccccccccccCCCCCCeEEeccCCCcccCCccCC
Q 001998 623 GLKIEELPETCCKLFNLQTLDINECYRLKRLPQGVGSLVNLRHLVVSLNGDLDYLPKGVE 682 (984)
Q Consensus 623 ~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~~p~~i~ 682 (984)
+|.+..+|..+++|++||.|.++.|. +-++|.+++.|+.|+.|++.+| .+..+|+.++
T Consensus 136 dndfe~lp~dvg~lt~lqil~lrdnd-ll~lpkeig~lt~lrelhiqgn-rl~vlppel~ 193 (264)
T KOG0617|consen 136 DNDFEILPPDVGKLTNLQILSLRDND-LLSLPKEIGDLTRLRELHIQGN-RLTVLPPELA 193 (264)
T ss_pred CCCcccCChhhhhhcceeEEeeccCc-hhhCcHHHHHHHHHHHHhcccc-eeeecChhhh
Confidence 55555555555555555555555544 4445555555555555555544 3444444433
No 26
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.17 E-value=2.7e-09 Score=114.27 Aligned_cols=182 Identities=16% Similarity=0.131 Sum_probs=116.3
Q ss_pred eEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHH----H-
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAIIEELEGSATDLHELNSLLRRIG----A- 281 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~----~- 281 (984)
..++.|+|.+|+|||||++.+++.... ..+ ..+|+ +....+..+++..|+..++.+... .+.......+. .
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~-~~~~~~~~~l~~~l~~~ 118 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQ-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLETEG-RDKAALLRELEDFLIEQ 118 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCC-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCCC-CCHHHHHHHHHHHHHHH
Confidence 457899999999999999999985321 111 22333 344567889999999888765332 22222223332 2
Q ss_pred HhCCCceEEEEEcCCCCCcCChhhHHHhhcC---CCCCcEEEEEccchHHHhhcC----------CCCeEeCCCCChHhH
Q 001998 282 NIAGQKFFMVLDNLWTDDYRKWEPFRNCLMN---GLRGSKILLTTRKETVARMME----------STDIVYVQGLSEPEC 348 (984)
Q Consensus 282 ~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~---~~~gs~iiiTtr~~~v~~~~~----------~~~~~~l~~L~~~~~ 348 (984)
...+++.+||+||+|..+...++.+...... ......|++|.... ....+. ....+.+.+++.+|.
T Consensus 119 ~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~ 197 (269)
T TIGR03015 119 FAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREET 197 (269)
T ss_pred HhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHHH
Confidence 2368889999999988655556665533221 12233556666543 221111 134678999999999
Q ss_pred HHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHHHHhh
Q 001998 349 WSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLPLAAKTIGSLL 393 (984)
Q Consensus 349 ~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~~l 393 (984)
.+++.......+......--.+..+.|++.++|.|..|..++..+
T Consensus 198 ~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 198 REYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 999987764332111111235677889999999999999998776
No 27
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.15 E-value=1.3e-08 Score=114.16 Aligned_cols=302 Identities=13% Similarity=0.086 Sum_probs=173.3
Q ss_pred ccCCcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccc-cCC---CeEEEEEecCCCCH
Q 001998 176 IDVSEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVI-NNF---EIRVWVCVSDPFDE 251 (984)
Q Consensus 176 ~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F---~~~~wv~~s~~~~~ 251 (984)
..+..++||++++++|..+|..... +.....+.|+|++|+|||++++.+++..... ... -..+|+.+....+.
T Consensus 12 ~~p~~l~gRe~e~~~l~~~l~~~~~---~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~ 88 (365)
T TIGR02928 12 YVPDRIVHRDEQIEELAKALRPILR---GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTL 88 (365)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHc---CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCH
Confidence 3445899999999999999865321 1234568999999999999999999842111 111 24578888777788
Q ss_pred HHHHHHHHHHhc---CCC-CCcccHHHHHHHHHHHh--CCCceEEEEEcCCCCCcCChhhHHHhhcC-----CC--CCcE
Q 001998 252 FSVAKAIIEELE---GSA-TDLHELNSLLRRIGANI--AGQKFFMVLDNLWTDDYRKWEPFRNCLMN-----GL--RGSK 318 (984)
Q Consensus 252 ~~~~~~i~~~l~---~~~-~~~~~~~~~~~~l~~~l--~~kr~LlVlDdvw~~~~~~~~~l~~~l~~-----~~--~gs~ 318 (984)
..++..|++++. ... ....+..++...+.+.+ .+++++||||+++.-. .....+...+.. .. ....
T Consensus 89 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~-~~~~~~L~~l~~~~~~~~~~~~~v~ 167 (365)
T TIGR02928 89 YQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLV-GDDDDLLYQLSRARSNGDLDNAKVG 167 (365)
T ss_pred HHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhc-cCCcHHHHhHhccccccCCCCCeEE
Confidence 899999999984 221 11223445555555555 3668899999996542 111222222211 11 2234
Q ss_pred EEEEccchHHHhhcC-----C--CCeEeCCCCChHhHHHHHHHHhcC-CCCCCCchhHHHHHHHHHHhcCCChHHH-HHH
Q 001998 319 ILLTTRKETVARMME-----S--TDIVYVQGLSEPECWSLFRRFAFS-GRTPLECDQLEEIGRGIVRKCKGLPLAA-KTI 389 (984)
Q Consensus 319 iiiTtr~~~v~~~~~-----~--~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~l~~~~~~i~~~~~GlPLai-~~~ 389 (984)
+|.+|+.......+. . ...+.+.+.+.++..+++..++.. .....-.++..+...+++....|.|-.+ .++
T Consensus 168 lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l 247 (365)
T TIGR02928 168 VIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLL 247 (365)
T ss_pred EEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHH
Confidence 455554433221111 1 246889999999999999888631 1111223344445556777777888444 333
Q ss_pred HHhh--c--cC---CCHHHHHHHHhhhhhhhhhhcccccchhhccccCCChhhhhhhhhcccC--CCCCccChHHHHHHH
Q 001998 390 GSLL--Q--FK---RTKEEWQSVLDSEMWQLEEFERGLSAPLFLSYNDLPFEIKRCFSYCAIF--PKGSSLKKDELVKLW 460 (984)
Q Consensus 390 ~~~l--~--~~---~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl~~~~f--p~~~~i~~~~li~~W 460 (984)
-.+. . .+ -+.+....+.+... .....-++..||.+.|..+..+... .++..+....+...+
T Consensus 248 ~~a~~~a~~~~~~~it~~~v~~a~~~~~----------~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y 317 (365)
T TIGR02928 248 RVAGEIAEREGAERVTEDHVEKAQEKIE----------KDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVY 317 (365)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHH----------HHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHH
Confidence 2211 1 11 23444444443321 1122335678888888655554421 133446666666532
Q ss_pred --HHcCC-cCCCCCchHHHhHHHHHHHHhhccccccee
Q 001998 461 --MAQGY-IVPKGNKEMEVIGLEYFDCLASRSFYQQFV 495 (984)
Q Consensus 461 --iaeg~-i~~~~~~~~e~~~~~~~~~L~~r~l~~~~~ 495 (984)
+++.+ +.+ ..+.....++.+|...+++....
T Consensus 318 ~~~~~~~~~~~----~~~~~~~~~l~~l~~~gli~~~~ 351 (365)
T TIGR02928 318 KEVCEDIGVDP----LTQRRISDLLNELDMLGLVEAEE 351 (365)
T ss_pred HHHHHhcCCCC----CcHHHHHHHHHHHHhcCCeEEEE
Confidence 12211 111 12355677899999999997643
No 28
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.08 E-value=8.6e-12 Score=137.68 Aligned_cols=64 Identities=27% Similarity=0.240 Sum_probs=33.3
Q ss_pred ccccccCccceEEecCCCcc-----ccchhhccCCcccEEeccccccc------ccccccccCCCCCCeEEeccC
Q 001998 608 REIEKLIHLRSLRLAGLKIE-----ELPETCCKLFNLQTLDINECYRL------KRLPQGVGSLVNLRHLVVSLN 671 (984)
Q Consensus 608 ~~i~~L~~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~~l------~~lP~~i~~L~~L~~L~l~~~ 671 (984)
..+..+.+|++|++++|.++ .++..+...++|++|+++++..- ..++..+.++++|++|++++|
T Consensus 17 ~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 91 (319)
T cd00116 17 ELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDN 91 (319)
T ss_pred HHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCC
Confidence 33444555666666666652 34455555555666666655411 112333445556666666555
No 29
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.05 E-value=2.4e-11 Score=134.14 Aligned_cols=90 Identities=20% Similarity=0.125 Sum_probs=45.1
Q ss_pred cCCCCCCeEEEEEcCCcccccCcCchhhccHHHHhhcCCCCCCCCeEEEeecCCCCCCCchhh-c----CCCCcEEEEeC
Q 001998 742 EKKKNIVGLELRFDKEEAATEGINEENEINHQAISEALRPPPDLEALEIMHYKGQTAFPSWIV-S----LNKLKKLKLSS 816 (984)
Q Consensus 742 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~lp~~l~-~----l~~L~~L~L~~ 816 (984)
..+++|+.|+++.|..... ....+...+..+++|++|++++|.+...-+..+. . .+.|++|++++
T Consensus 190 ~~~~~L~~L~L~~n~i~~~----------~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~ 259 (319)
T cd00116 190 KANCNLEVLDLNNNGLTDE----------GASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSC 259 (319)
T ss_pred HhCCCCCEEeccCCccChH----------HHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccC
Confidence 3445666666666554211 1223344455566677777776655431111111 1 35677777766
Q ss_pred cCCCC----cCC-CCCCCCCcceeeecccc
Q 001998 817 CCKCE----IMP-PLGALPSLEILQIQRME 841 (984)
Q Consensus 817 ~~~~~----~l~-~l~~Lp~L~~L~L~~~~ 841 (984)
|.... .+. .+..+++|++|++++|.
T Consensus 260 n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 260 NDITDDGAKDLAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred CCCCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence 65431 111 13444666666666654
No 30
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.03 E-value=1.2e-09 Score=114.44 Aligned_cols=193 Identities=18% Similarity=0.188 Sum_probs=99.9
Q ss_pred ccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHH--
Q 001998 181 VRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAI-- 258 (984)
Q Consensus 181 ~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i-- 258 (984)
|+||++|+++|.+++..+ ..+.+.|+|..|+|||+|++.+.+. .+..-..++|+....... ......+
T Consensus 1 F~gR~~el~~l~~~l~~~-------~~~~~~l~G~rg~GKTsLl~~~~~~--~~~~~~~~~y~~~~~~~~-~~~~~~~~~ 70 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG-------PSQHILLYGPRGSGKTSLLKEFINE--LKEKGYKVVYIDFLEESN-ESSLRSFIE 70 (234)
T ss_dssp S-S-HHHHHHHHHCHHH---------SSEEEEEESTTSSHHHHHHHHHHH--CT--EECCCHHCCTTBSH-HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh-------cCcEEEEEcCCcCCHHHHHHHHHHH--hhhcCCcEEEEecccchh-hhHHHHHHH
Confidence 789999999999998653 2457889999999999999999983 322111344444433332 2222222
Q ss_pred ------------HHHhcCCCC------C----cccHHHHHHHHHHHhCCCceEEEEEcCCCCC--cCChh----hHHHhh
Q 001998 259 ------------IEELEGSAT------D----LHELNSLLRRIGANIAGQKFFMVLDNLWTDD--YRKWE----PFRNCL 310 (984)
Q Consensus 259 ------------~~~l~~~~~------~----~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~--~~~~~----~l~~~l 310 (984)
...+..... . ......+...+.+ .+++.+||+||+..-. ..... .+...+
T Consensus 71 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~--~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~ 148 (234)
T PF01637_consen 71 ETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKK--KGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLL 148 (234)
T ss_dssp HHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHH--CHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHh--cCCcEEEEEecHHHHhhcccchHHHHHHHHHHH
Confidence 111111110 1 1222333333332 2445999999995432 01112 233333
Q ss_pred cC--CCCCcEEEEEccchHHHhh--------cCCCCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcC
Q 001998 311 MN--GLRGSKILLTTRKETVARM--------MESTDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCK 380 (984)
Q Consensus 311 ~~--~~~gs~iiiTtr~~~v~~~--------~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~ 380 (984)
.. ....-.+|++......... .+....+.+++|+.+++++++....-.. ... +.-.+..++|+..+|
T Consensus 149 ~~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~--~~~~~~~~~i~~~~g 225 (234)
T PF01637_consen 149 DSLLSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKL--PFSDEDIEEIYSLTG 225 (234)
T ss_dssp HH----TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC---------HHHHHHHHHHHT
T ss_pred hhccccCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcc--cCCHHHHHHHHHHhC
Confidence 33 2233344455444443332 2334569999999999999999865332 111 112444578999999
Q ss_pred CChHHHHH
Q 001998 381 GLPLAAKT 388 (984)
Q Consensus 381 GlPLai~~ 388 (984)
|+|..|..
T Consensus 226 G~P~~l~~ 233 (234)
T PF01637_consen 226 GNPRYLQE 233 (234)
T ss_dssp T-HHHHHH
T ss_pred CCHHHHhc
Confidence 99988754
No 31
>PF05729 NACHT: NACHT domain
Probab=98.94 E-value=6.7e-09 Score=102.24 Aligned_cols=143 Identities=20% Similarity=0.306 Sum_probs=89.4
Q ss_pred EEEEEEecCcchHHHHHHHHhcCcccccC----CCeEEEEEecCCCCHH---HHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYNDNDVINN----FEIRVWVCVSDPFDEF---SVAKAIIEELEGSATDLHELNSLLRRIG 280 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~s~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 280 (984)
|++.|+|.+|+||||+++.++.+-..... +...+|++........ .+...|..+...... ........+
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~---~~~~~~~~~- 76 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIA---PIEELLQEL- 76 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchh---hhHHHHHHH-
Confidence 57899999999999999999875322222 4566777765544332 344444444332211 111111111
Q ss_pred HHhCCCceEEEEEcCCCCCc--C-----Chhh-HHHhhcC-CCCCcEEEEEccchHH---HhhcCCCCeEeCCCCChHhH
Q 001998 281 ANIAGQKFFMVLDNLWTDDY--R-----KWEP-FRNCLMN-GLRGSKILLTTRKETV---ARMMESTDIVYVQGLSEPEC 348 (984)
Q Consensus 281 ~~l~~kr~LlVlDdvw~~~~--~-----~~~~-l~~~l~~-~~~gs~iiiTtr~~~v---~~~~~~~~~~~l~~L~~~~~ 348 (984)
.-..++++||+|++.+-.. . .+.. +...+.. ..++.++|||+|.... .........+.+.+|++++.
T Consensus 77 -~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~ 155 (166)
T PF05729_consen 77 -LEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDI 155 (166)
T ss_pred -HHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHH
Confidence 1257899999999865321 1 1223 2333333 3578999999999765 34445556899999999999
Q ss_pred HHHHHHH
Q 001998 349 WSLFRRF 355 (984)
Q Consensus 349 ~~lf~~~ 355 (984)
.+++.+.
T Consensus 156 ~~~~~~~ 162 (166)
T PF05729_consen 156 KQYLRKY 162 (166)
T ss_pred HHHHHHH
Confidence 9998765
No 32
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.93 E-value=5.4e-09 Score=114.63 Aligned_cols=276 Identities=17% Similarity=0.152 Sum_probs=145.2
Q ss_pred CCcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHH
Q 001998 178 VSEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKA 257 (984)
Q Consensus 178 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 257 (984)
-.+|+|++..++.+..++...... +.....+.|+|++|+||||||+.+++. ....+ .++... .......+..
T Consensus 24 ~~~~vG~~~~~~~l~~~l~~~~~~--~~~~~~~ll~GppG~GKT~la~~ia~~--l~~~~---~~~~~~-~~~~~~~l~~ 95 (328)
T PRK00080 24 LDEFIGQEKVKENLKIFIEAAKKR--GEALDHVLLYGPPGLGKTTLANIIANE--MGVNI---RITSGP-ALEKPGDLAA 95 (328)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHhc--CCCCCcEEEECCCCccHHHHHHHHHHH--hCCCe---EEEecc-cccChHHHHH
Confidence 457999999999998887642110 123556789999999999999999984 32222 112111 1122222333
Q ss_pred HHHHhcCCCC-CcccHH----HHHHHHHHHhCCCceEEEEEcCCCCCcCChhhHHHhhcCCCCCcEEEEEccchHHHhhc
Q 001998 258 IIEELEGSAT-DLHELN----SLLRRIGANIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILLTTRKETVARMM 332 (984)
Q Consensus 258 i~~~l~~~~~-~~~~~~----~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~v~~~~ 332 (984)
++..+..... -.++.+ ...+.+...+.+.+..+|+|+..+.. .+ ...+ .+.+-|..||+...+...+
T Consensus 96 ~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~--~~---~~~l---~~~~li~at~~~~~l~~~L 167 (328)
T PRK00080 96 ILTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAAR--SI---RLDL---PPFTLIGATTRAGLLTSPL 167 (328)
T ss_pred HHHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCcccc--ce---eecC---CCceEEeecCCcccCCHHH
Confidence 3333321100 000110 11222334444445555555542211 00 0011 1234566676654433322
Q ss_pred CC--CCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHHHHhhccCCCHHHHHHHHhhhh
Q 001998 333 ES--TDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLPLAAKTIGSLLQFKRTKEEWQSVLDSEM 410 (984)
Q Consensus 333 ~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~~l~~~~~~~~w~~~l~~~~ 410 (984)
.. ...+++++++.++..+++.+.+...+.... .+....|++.|+|.|-.+..+...+. .|........
T Consensus 168 ~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~----~~~~~~ia~~~~G~pR~a~~~l~~~~------~~a~~~~~~~ 237 (328)
T PRK00080 168 RDRFGIVQRLEFYTVEELEKIVKRSARILGVEID----EEGALEIARRSRGTPRIANRLLRRVR------DFAQVKGDGV 237 (328)
T ss_pred HHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcC----HHHHHHHHHHcCCCchHHHHHHHHHH------HHHHHcCCCC
Confidence 11 246889999999999999988755433222 35567799999999965544444321 1211110000
Q ss_pred hhhhhhcccccchhhccccCCChhhhhhhh-hcccCCCCCccChHHHHHHHHHcCCcCCCCCchHHHhHHHHHH-HHhhc
Q 001998 411 WQLEEFERGLSAPLFLSYNDLPFEIKRCFS-YCAIFPKGSSLKKDELVKLWMAQGYIVPKGNKEMEVIGLEYFD-CLASR 488 (984)
Q Consensus 411 ~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl-~~~~fp~~~~i~~~~li~~Wiaeg~i~~~~~~~~e~~~~~~~~-~L~~r 488 (984)
-. ...-......+...|..|++..+..+. ....|+.+ ++..+.+.... | .+ .+.++..++ .|++.
T Consensus 238 I~-~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l---g----~~----~~~~~~~~e~~Li~~ 304 (328)
T PRK00080 238 IT-KEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL---G----EE----RDTIEDVYEPYLIQQ 304 (328)
T ss_pred CC-HHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH---C----CC----cchHHHHhhHHHHHc
Confidence 00 000012234456778888887777664 66777766 46665554332 1 11 123333444 78999
Q ss_pred cccc
Q 001998 489 SFYQ 492 (984)
Q Consensus 489 ~l~~ 492 (984)
+|++
T Consensus 305 ~li~ 308 (328)
T PRK00080 305 GFIQ 308 (328)
T ss_pred CCcc
Confidence 9986
No 33
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.93 E-value=6.4e-09 Score=113.45 Aligned_cols=267 Identities=17% Similarity=0.115 Sum_probs=144.6
Q ss_pred CcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHH
Q 001998 179 SEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAI 258 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 258 (984)
.+|+|++..++.+..++...... ......+.++|++|+|||+||+.+++. ....+ ..+..+.... ...+...
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~--~~~~~~~ll~Gp~G~GKT~la~~ia~~--~~~~~---~~~~~~~~~~-~~~l~~~ 75 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMR--QEALDHLLLYGPPGLGKTTLAHIIANE--MGVNL---KITSGPALEK-PGDLAAI 75 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHH--hCCCE---EEeccchhcC-chhHHHH
Confidence 47999999999999888643210 123455789999999999999999984 32222 1122111111 1122222
Q ss_pred HHHhcCCCC-CcccH----HHHHHHHHHHhCCCceEEEEEcCCCCCcCChhhHHHhhcCCCCCcEEEEEccchHHHhhcC
Q 001998 259 IEELEGSAT-DLHEL----NSLLRRIGANIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILLTTRKETVARMME 333 (984)
Q Consensus 259 ~~~l~~~~~-~~~~~----~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~v~~~~~ 333 (984)
+..+..... -.++. ......+...+.+.+..+|+|+..+. ..|.. .+ .+.+-|..||+...+...+.
T Consensus 76 l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~--~~~~~---~~---~~~~li~~t~~~~~l~~~l~ 147 (305)
T TIGR00635 76 LTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSA--RSVRL---DL---PPFTLVGATTRAGMLTSPLR 147 (305)
T ss_pred HHhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccc--cceee---cC---CCeEEEEecCCccccCHHHH
Confidence 333321110 00011 11233344555555666666665332 12211 11 12455666777654433221
Q ss_pred --CCCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHHHHhhc------cC--CCHHHHH
Q 001998 334 --STDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLPLAAKTIGSLLQ------FK--RTKEEWQ 403 (984)
Q Consensus 334 --~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~~l~------~~--~~~~~w~ 403 (984)
-...+.+++++.++..+++.+.+...+.... .+....|++.|+|.|-.+..++..+. .. -+.+...
T Consensus 148 sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~----~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~~~~~~it~~~v~ 223 (305)
T TIGR00635 148 DRFGIILRLEFYTVEELAEIVSRSAGLLNVEIE----PEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQKIINRDIAL 223 (305)
T ss_pred hhcceEEEeCCCCHHHHHHHHHHHHHHhCCCcC----HHHHHHHHHHhCCCcchHHHHHHHHHHHHHHcCCCCcCHHHHH
Confidence 1346789999999999999988754332222 34556799999999976655544321 00 0111111
Q ss_pred HHHhhhhhhhhhhcccccchhhccccCCChhhhhhhh-hcccCCCCCccChHHHHHHHHHcCCcCCCCCchHHHhHHHHH
Q 001998 404 SVLDSEMWQLEEFERGLSAPLFLSYNDLPFEIKRCFS-YCAIFPKGSSLKKDELVKLWMAQGYIVPKGNKEMEVIGLEYF 482 (984)
Q Consensus 404 ~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl-~~~~fp~~~~i~~~~li~~Wiaeg~i~~~~~~~~e~~~~~~~ 482 (984)
. ....+...|..++++.+..+. .+..++.+ ++..+.+.... |- ....++..+
T Consensus 224 ~---------------~l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l---g~--------~~~~~~~~~ 276 (305)
T TIGR00635 224 K---------------ALEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL---GE--------DADTIEDVY 276 (305)
T ss_pred H---------------HHHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh---CC--------CcchHHHhh
Confidence 1 122256678889888777555 55666544 44444433221 11 123455556
Q ss_pred H-HHhhccccc
Q 001998 483 D-CLASRSFYQ 492 (984)
Q Consensus 483 ~-~L~~r~l~~ 492 (984)
+ .|++++|+.
T Consensus 277 e~~Li~~~li~ 287 (305)
T TIGR00635 277 EPYLLQIGFLQ 287 (305)
T ss_pred hHHHHHcCCcc
Confidence 7 699999995
No 34
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.92 E-value=1.6e-07 Score=107.69 Aligned_cols=294 Identities=17% Similarity=0.215 Sum_probs=187.4
Q ss_pred CCcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecC-CCCHHHHHH
Q 001998 178 VSEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSD-PFDEFSVAK 256 (984)
Q Consensus 178 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~ 256 (984)
....+-|..-.+.+.. ..+.+++.|..++|.|||||+..... ....=..+.|.++.. +-++..+.+
T Consensus 18 ~~~~v~R~rL~~~L~~----------~~~~RL~li~APAGfGKttl~aq~~~---~~~~~~~v~Wlslde~dndp~rF~~ 84 (894)
T COG2909 18 PDNYVVRPRLLDRLRR----------ANDYRLILISAPAGFGKTTLLAQWRE---LAADGAAVAWLSLDESDNDPARFLS 84 (894)
T ss_pred cccccccHHHHHHHhc----------CCCceEEEEeCCCCCcHHHHHHHHHH---hcCcccceeEeecCCccCCHHHHHH
Confidence 4456666655554433 23689999999999999999998874 122334689999865 457888888
Q ss_pred HHHHHhcCCCC-------------CcccHHHHHHHHHHHhC--CCceEEEEEcCCCCCcCChh-hHHHhhcCCCCCcEEE
Q 001998 257 AIIEELEGSAT-------------DLHELNSLLRRIGANIA--GQKFFMVLDNLWTDDYRKWE-PFRNCLMNGLRGSKIL 320 (984)
Q Consensus 257 ~i~~~l~~~~~-------------~~~~~~~~~~~l~~~l~--~kr~LlVlDdvw~~~~~~~~-~l~~~l~~~~~gs~ii 320 (984)
-++..+..-.+ ...++..+...+...+. .++..+||||---....... .+...+.....+-..|
T Consensus 85 yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lv 164 (894)
T COG2909 85 YLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLV 164 (894)
T ss_pred HHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEE
Confidence 88888863211 12334455555555443 56899999996432222333 3555556667788999
Q ss_pred EEccchH---HHhhcCCCCeEeC----CCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHHHHhh
Q 001998 321 LTTRKET---VARMMESTDIVYV----QGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLPLAAKTIGSLL 393 (984)
Q Consensus 321 iTtr~~~---v~~~~~~~~~~~l----~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~~l 393 (984)
+|||++. +++.--.....++ -.++.+|+-++|....... -+ +.-.+.+.+..+|-+-|+..++=.+
T Consensus 165 v~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~---Ld----~~~~~~L~~~teGW~~al~L~aLa~ 237 (894)
T COG2909 165 VTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLP---LD----AADLKALYDRTEGWAAALQLIALAL 237 (894)
T ss_pred EEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCC---CC----hHHHHHHHhhcccHHHHHHHHHHHc
Confidence 9999864 2221111122222 3688999999998765221 11 3445669999999999999998888
Q ss_pred ccCCCHHHHHHHHh---hhhhhhhhhcccccchhhccccCCChhhhhhhhhcccCCCCCccChHHHHHHHHHcCCcCCCC
Q 001998 394 QFKRTKEEWQSVLD---SEMWQLEEFERGLSAPLFLSYNDLPFEIKRCFSYCAIFPKGSSLKKDELVKLWMAQGYIVPKG 470 (984)
Q Consensus 394 ~~~~~~~~w~~~l~---~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl~~~~fp~~~~i~~~~li~~Wiaeg~i~~~~ 470 (984)
+.+.+.+.-...+. +..++. ...--++.||+++|..++-||+++.= -+.|+..-
T Consensus 238 ~~~~~~~q~~~~LsG~~~~l~dY---------L~eeVld~Lp~~l~~FLl~~svl~~f----~~eL~~~L---------- 294 (894)
T COG2909 238 RNNTSAEQSLRGLSGAASHLSDY---------LVEEVLDRLPPELRDFLLQTSVLSRF----NDELCNAL---------- 294 (894)
T ss_pred cCCCcHHHHhhhccchHHHHHHH---------HHHHHHhcCCHHHHHHHHHHHhHHHh----hHHHHHHH----------
Confidence 74444433332222 111111 11223678999999999999998662 12333321
Q ss_pred CchHHHhHHHHHHHHhhcccccceecCCCCceeeEEechHHHHHHHHhh
Q 001998 471 NKEMEVIGLEYFDCLASRSFYQQFVKDDDNMVIGCTMHDVVHDFAQFLT 519 (984)
Q Consensus 471 ~~~~e~~~~~~~~~L~~r~l~~~~~~~~~~~~~~~~~Hdlv~~~~~~~~ 519 (984)
+-++-|...+++|.+++++-..-.+.. .+|+.|.++.+|.+.--
T Consensus 295 --tg~~ng~amLe~L~~~gLFl~~Ldd~~---~WfryH~LFaeFL~~r~ 338 (894)
T COG2909 295 --TGEENGQAMLEELERRGLFLQRLDDEG---QWFRYHHLFAEFLRQRL 338 (894)
T ss_pred --hcCCcHHHHHHHHHhCCCceeeecCCC---ceeehhHHHHHHHHhhh
Confidence 223456778999999999854333322 35899999999986543
No 35
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.86 E-value=1.5e-10 Score=125.15 Aligned_cols=120 Identities=30% Similarity=0.314 Sum_probs=86.2
Q ss_pred eeEEeccCCCcchhhhHHhhhccccccee-cCCCCccccCcccccccCccceEEecCCCccccchhhccCCcccEEeccc
Q 001998 568 LRSLLIHSPLEVLSPVLKGLFDHLTYGED-DGGENTVHDIPREIEKLIHLRSLRLAGLKIEELPETCCKLFNLQTLDINE 646 (984)
Q Consensus 568 Lr~L~l~~~~~~~~~~~~~~~~~l~~Lrv-~l~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~ 646 (984)
-...+++.|. +.. ++.-+..|..|.. .+..|.+..+|..++++..|.||+|+.|+++.+|..+|.|+ |+.|.+++
T Consensus 77 t~~aDlsrNR--~~e-lp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sN 152 (722)
T KOG0532|consen 77 TVFADLSRNR--FSE-LPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSN 152 (722)
T ss_pred hhhhhccccc--ccc-CchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEec
Confidence 3344555554 222 3444666666666 77777777888888888888888888888888888888775 78888887
Q ss_pred ccccccccccccCCCCCCeEEeccCCCcccCCccCCCCCCCCcCCce
Q 001998 647 CYRLKRLPQGVGSLVNLRHLVVSLNGDLDYLPKGVERLTSLRTLREF 693 (984)
Q Consensus 647 ~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~ 693 (984)
|+ ++.+|..|+.+..|.+|+.+.| .+..+|..++.+++|+.|...
T Consensus 153 Nk-l~~lp~~ig~~~tl~~ld~s~n-ei~slpsql~~l~slr~l~vr 197 (722)
T KOG0532|consen 153 NK-LTSLPEEIGLLPTLAHLDVSKN-EIQSLPSQLGYLTSLRDLNVR 197 (722)
T ss_pred Cc-cccCCcccccchhHHHhhhhhh-hhhhchHHhhhHHHHHHHHHh
Confidence 76 7788888887788888888777 667777777777777776543
No 36
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.72 E-value=5.4e-10 Score=120.95 Aligned_cols=188 Identities=26% Similarity=0.296 Sum_probs=145.6
Q ss_pred cCCCCccccCcccccccCccceEEecCCCccccchhhccCCcccEEecccccccccccccccCCCCCCeEEeccCCCccc
Q 001998 597 DGGENTVHDIPREIEKLIHLRSLRLAGLKIEELPETCCKLFNLQTLDINECYRLKRLPQGVGSLVNLRHLVVSLNGDLDY 676 (984)
Q Consensus 597 ~l~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~ 676 (984)
|++.|.+.++|..++.+..|..|.|..|.|..+|..+++|..|.+|||+.|. +..+|..++.|+ |+.|.+++| +++.
T Consensus 81 DlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp-Lkvli~sNN-kl~~ 157 (722)
T KOG0532|consen 81 DLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDLP-LKVLIVSNN-KLTS 157 (722)
T ss_pred hccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccch-hhcCChhhhcCc-ceeEEEecC-cccc
Confidence 9999999999999999999999999999999999999999999999999998 999999999987 899999877 8899
Q ss_pred CCccCCCCCCCCcCCceEecCCCCcccccccccccccccccCCCeeEEcCCCCCCChhhhhHhcccCCCCCCeEEEEEcC
Q 001998 677 LPKGVERLTSLRTLREFVVSSTGGKYCTKACKVEGLRQLNHLRGTLRIRGLGNVTDVEEAEKADLEKKKNIVGLELRFDK 756 (984)
Q Consensus 677 ~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~ 756 (984)
+|.+++.+..|..|+...+...+ ...++..|. .|+.|++..|.
T Consensus 158 lp~~ig~~~tl~~ld~s~nei~s--------lpsql~~l~-----------------------------slr~l~vrRn~ 200 (722)
T KOG0532|consen 158 LPEEIGLLPTLAHLDVSKNEIQS--------LPSQLGYLT-----------------------------SLRDLNVRRNH 200 (722)
T ss_pred CCcccccchhHHHhhhhhhhhhh--------chHHhhhHH-----------------------------HHHHHHHhhhh
Confidence 99999988888888766544332 112222222 33333333332
Q ss_pred CcccccCcCchhhccHHHHhhcCCCCCCCCeEEEeecCCCCCCCchhhcCCCCcEEEEeCcCCCCcCCC---CCCCCCcc
Q 001998 757 EEAATEGINEENEINHQAISEALRPPPDLEALEIMHYKGQTAFPSWIVSLNKLKKLKLSSCCKCEIMPP---LGALPSLE 833 (984)
Q Consensus 757 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~l~~---l~~Lp~L~ 833 (984)
. ..+++.+.. -.|.+|+++.|++.. +|..|..|..|+.|.|.+|+....... -|...=.+
T Consensus 201 l---------------~~lp~El~~-LpLi~lDfScNkis~-iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFK 263 (722)
T KOG0532|consen 201 L---------------EDLPEELCS-LPLIRLDFSCNKISY-LPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFK 263 (722)
T ss_pred h---------------hhCCHHHhC-CceeeeecccCceee-cchhhhhhhhheeeeeccCCCCCChHHHHhccceeeee
Confidence 2 223444442 358999999999988 999999999999999999976643222 34455577
Q ss_pred eeeecccc
Q 001998 834 ILQIQRME 841 (984)
Q Consensus 834 ~L~L~~~~ 841 (984)
+|+.+.|.
T Consensus 264 yL~~qA~q 271 (722)
T KOG0532|consen 264 YLSTQACQ 271 (722)
T ss_pred eecchhcc
Confidence 88887773
No 37
>PRK06893 DNA replication initiation factor; Validated
Probab=98.70 E-value=3.4e-07 Score=94.56 Aligned_cols=153 Identities=16% Similarity=0.193 Sum_probs=95.9
Q ss_pred eEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCC
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAIIEELEGSATDLHELNSLLRRIGANIAGQ 286 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 286 (984)
.+.+.++|..|+|||+||+.+++. .......+.|+.+... ..... .+.+.+. +
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~y~~~~~~---~~~~~---------------------~~~~~~~-~ 91 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNH--YLLNQRTAIYIPLSKS---QYFSP---------------------AVLENLE-Q 91 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEeeHHHh---hhhhH---------------------HHHhhcc-c
Confidence 356899999999999999999984 3333445667765310 00000 1111122 2
Q ss_pred ceEEEEEcCCCCC-cCChhh-HHHhhcCC-CCCcEEE-EEccc---------hHHHhhcCCCCeEeCCCCChHhHHHHHH
Q 001998 287 KFFMVLDNLWTDD-YRKWEP-FRNCLMNG-LRGSKIL-LTTRK---------ETVARMMESTDIVYVQGLSEPECWSLFR 353 (984)
Q Consensus 287 r~LlVlDdvw~~~-~~~~~~-l~~~l~~~-~~gs~ii-iTtr~---------~~v~~~~~~~~~~~l~~L~~~~~~~lf~ 353 (984)
.-+||+||+|... ...|.. +...+... ..|..+| +|++. ..+...+.....+++++++.++.++++.
T Consensus 92 ~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~ 171 (229)
T PRK06893 92 QDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQ 171 (229)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHH
Confidence 3489999998642 245653 33333322 2355554 45544 3566666667799999999999999999
Q ss_pred HHhcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHHH
Q 001998 354 RFAFSGRTPLECDQLEEIGRGIVRKCKGLPLAAKTIG 390 (984)
Q Consensus 354 ~~~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~ 390 (984)
+.++..+-... +++.+-|++++.|..-++..+-
T Consensus 172 ~~a~~~~l~l~----~~v~~~L~~~~~~d~r~l~~~l 204 (229)
T PRK06893 172 RNAYQRGIELS----DEVANFLLKRLDRDMHTLFDAL 204 (229)
T ss_pred HHHHHcCCCCC----HHHHHHHHHhccCCHHHHHHHH
Confidence 98864432222 4556668888887766554443
No 38
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.70 E-value=5.3e-07 Score=104.20 Aligned_cols=215 Identities=10% Similarity=0.038 Sum_probs=132.0
Q ss_pred cCCcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCccc---ccCCC--eEEEEEecCCCCH
Q 001998 177 DVSEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDV---INNFE--IRVWVCVSDPFDE 251 (984)
Q Consensus 177 ~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~F~--~~~wv~~s~~~~~ 251 (984)
.+..+.|||+|+++|...|...-.+ .....++.|+|.+|.|||+.++.|.+..+. ..... .+++|.+..-.+.
T Consensus 753 VPD~LPhREeEIeeLasfL~paIkg--sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp 830 (1164)
T PTZ00112 753 VPKYLPCREKEIKEVHGFLESGIKQ--SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHP 830 (1164)
T ss_pred CCCcCCChHHHHHHHHHHHHHHHhc--CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCH
Confidence 3568999999999999988653211 123467889999999999999999874211 11222 3677888777889
Q ss_pred HHHHHHHHHHhcCCCC-CcccHHHHHHHHHHHhC---CCceEEEEEcCCCCCcCChhhHHHhhcC-CCCCcEEEE--Ecc
Q 001998 252 FSVAKAIIEELEGSAT-DLHELNSLLRRIGANIA---GQKFFMVLDNLWTDDYRKWEPFRNCLMN-GLRGSKILL--TTR 324 (984)
Q Consensus 252 ~~~~~~i~~~l~~~~~-~~~~~~~~~~~l~~~l~---~kr~LlVlDdvw~~~~~~~~~l~~~l~~-~~~gs~iii--Ttr 324 (984)
..++..|.+++.+... ...........+...+. +...+||||++..-....=+.|...+.. ...+++|+| +|.
T Consensus 831 ~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISN 910 (1164)
T PTZ00112 831 NAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISN 910 (1164)
T ss_pred HHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecC
Confidence 9999999999954332 22223344445554442 2345899999954221111223323322 234556554 333
Q ss_pred chH--------HHhhcCCCCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHHHHhhc
Q 001998 325 KET--------VARMMESTDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLPLAAKTIGSLLQ 394 (984)
Q Consensus 325 ~~~--------v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~~l~ 394 (984)
..+ +...++ ...+...|.+.++..+++..++........+..++-+|+.++...|-.-.||.++-.+..
T Consensus 911 dlDLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgE 987 (1164)
T PTZ00112 911 TMDLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFE 987 (1164)
T ss_pred chhcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHh
Confidence 221 222222 234667999999999999998864333334455666666666666666677766655543
No 39
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.63 E-value=2.5e-08 Score=113.38 Aligned_cols=106 Identities=35% Similarity=0.391 Sum_probs=89.2
Q ss_pred hccccccee-cCCCCccccCcccccccC-ccceEEecCCCccccchhhccCCcccEEecccccccccccccccCCCCCCe
Q 001998 588 FDHLTYGED-DGGENTVHDIPREIEKLI-HLRSLRLAGLKIEELPETCCKLFNLQTLDINECYRLKRLPQGVGSLVNLRH 665 (984)
Q Consensus 588 ~~~l~~Lrv-~l~~~~i~~lp~~i~~L~-~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~ 665 (984)
...+..+.. ++.++.+..+|..++.+. +|++|++++|.+..+|..++.+++|+.|++++|. +..+|...+.+++|+.
T Consensus 112 ~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L~~ 190 (394)
T COG4886 112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNLNN 190 (394)
T ss_pred hhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCch-hhhhhhhhhhhhhhhh
Confidence 344567777 888889999998888885 9999999999999999899999999999999998 8999987779999999
Q ss_pred EEeccCCCcccCCccCCCCCCCCcCCceEe
Q 001998 666 LVVSLNGDLDYLPKGVERLTSLRTLREFVV 695 (984)
Q Consensus 666 L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~ 695 (984)
|++++| .+..+|..++.+..|++|.+..+
T Consensus 191 L~ls~N-~i~~l~~~~~~~~~L~~l~~~~N 219 (394)
T COG4886 191 LDLSGN-KISDLPPEIELLSALEELDLSNN 219 (394)
T ss_pred eeccCC-ccccCchhhhhhhhhhhhhhcCC
Confidence 999988 77888877666777877766543
No 40
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.60 E-value=2.9e-08 Score=95.97 Aligned_cols=130 Identities=25% Similarity=0.256 Sum_probs=52.5
Q ss_pred ccCCCceeEEeccCCCcchhhhHHhhhc-cccccee-cCCCCccccCcccccccCccceEEecCCCccccchhh-ccCCc
Q 001998 562 IFNAKKLRSLLIHSPLEVLSPVLKGLFD-HLTYGED-DGGENTVHDIPREIEKLIHLRSLRLAGLKIEELPETC-CKLFN 638 (984)
Q Consensus 562 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~-~l~~Lrv-~l~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i-~~L~~ 638 (984)
..++.++|.|++.++. +.. +.. +. .+..|++ ++++|.|..+. .+..+++|++|++++|.|+.++..+ ..+++
T Consensus 15 ~~n~~~~~~L~L~~n~--I~~-Ie~-L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~ 89 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQ--IST-IEN-LGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPN 89 (175)
T ss_dssp ------------------------S---TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT
T ss_pred cccccccccccccccc--ccc-ccc-hhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCc
Confidence 4456678899998887 222 222 33 5678888 99999998886 4888999999999999999997665 46899
Q ss_pred ccEEeccccccccccc--ccccCCCCCCeEEeccCCCcccCCc----cCCCCCCCCcCCceEecCC
Q 001998 639 LQTLDINECYRLKRLP--QGVGSLVNLRHLVVSLNGDLDYLPK----GVERLTSLRTLREFVVSST 698 (984)
Q Consensus 639 L~~L~L~~~~~l~~lP--~~i~~L~~L~~L~l~~~~~l~~~p~----~i~~l~~L~~L~~~~~~~~ 698 (984)
|++|++++|. +..+- ..+..+++|++|++.+|+. ...+. -+..+++|+.|+...+...
T Consensus 90 L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv-~~~~~YR~~vi~~lP~Lk~LD~~~V~~~ 153 (175)
T PF14580_consen 90 LQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNPV-CEKKNYRLFVIYKLPSLKVLDGQDVTEE 153 (175)
T ss_dssp --EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GG-GGSTTHHHHHHHH-TT-SEETTEETTS-
T ss_pred CCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCcc-cchhhHHHHHHHHcChhheeCCEEccHH
Confidence 9999999987 65543 2357889999999999853 33332 2677888998887665443
No 41
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.54 E-value=7.9e-07 Score=100.64 Aligned_cols=178 Identities=19% Similarity=0.248 Sum_probs=104.7
Q ss_pred CcccccHHHHHH---HHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHH
Q 001998 179 SEVRGRDEEMRT---LKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVA 255 (984)
Q Consensus 179 ~~~~Gr~~~~~~---l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 255 (984)
.+++|++..+.. +..++... ....+.++|.+|+||||||+.+++. ....| +.++......+-.
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~-------~~~~ilL~GppGtGKTtLA~~ia~~--~~~~~-----~~l~a~~~~~~~i 77 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAG-------RLSSMILWGPPGTGKTTLARIIAGA--TDAPF-----EALSAVTSGVKDL 77 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcC-------CCceEEEECCCCCCHHHHHHHHHHH--hCCCE-----EEEecccccHHHH
Confidence 468888877655 66666432 3456788999999999999999884 32232 2222221111112
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHHH-hCCCceEEEEEcCCCCCcCChhhHHHhhcCCCCCcEEEE--EccchH--HH-
Q 001998 256 KAIIEELEGSATDLHELNSLLRRIGAN-IAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILL--TTRKET--VA- 329 (984)
Q Consensus 256 ~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iii--Ttr~~~--v~- 329 (984)
+.+ ....... ..+++.+|++|+++.-.....+.+...+.. |..++| ||.+.. +.
T Consensus 78 r~i-----------------i~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI~att~n~~~~l~~ 137 (413)
T PRK13342 78 REV-----------------IEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLIGATTENPSFEVNP 137 (413)
T ss_pred HHH-----------------HHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEEEeCCCChhhhccH
Confidence 222 2222211 246788999999987554445555555443 444444 344432 11
Q ss_pred hhcCCCCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHHHH
Q 001998 330 RMMESTDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLPLAAKTIGS 391 (984)
Q Consensus 330 ~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~ 391 (984)
........+.+.+++.++.+.++.+......... .+--.+..+.|++.|+|.+..+..+..
T Consensus 138 aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~-i~i~~~al~~l~~~s~Gd~R~aln~Le 198 (413)
T PRK13342 138 ALLSRAQVFELKPLSEEDIEQLLKRALEDKERGL-VELDDEALDALARLANGDARRALNLLE 198 (413)
T ss_pred HHhccceeeEeCCCCHHHHHHHHHHHHHHhhcCC-CCCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 1123346889999999999999988653211100 011245566789999999977654443
No 42
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.52 E-value=3.4e-08 Score=98.58 Aligned_cols=117 Identities=21% Similarity=0.201 Sum_probs=62.2
Q ss_pred hhcCCCCCCCCeEEEeecCCCCCCCchhhcCCCCcEEEEeCcCCCCcCCCCCCCCCcceeeeccccCceEecceecCccC
Q 001998 776 SEALRPPPDLEALEIMHYKGQTAFPSWIVSLNKLKKLKLSSCCKCEIMPPLGALPSLEILQIQRMESVKRVGVEFLGIES 855 (984)
Q Consensus 776 ~~~l~~~~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~l~~l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~ 855 (984)
-++..-.|.++.|+++.|.+.. +-. +..+++|+.|+|++|...+....--.|.|.+.|.|.+|. ++.+..
T Consensus 300 DESvKL~Pkir~L~lS~N~i~~-v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~-iE~LSG------- 369 (490)
T KOG1259|consen 300 DESVKLAPKLRRLILSQNRIRT-VQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNK-IETLSG------- 369 (490)
T ss_pred hhhhhhccceeEEeccccceee-ehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhh-Hhhhhh-------
Confidence 3444555667777777766655 333 556677777777766544433333345566666666654 222210
Q ss_pred CCCCCCCCCccCcccccccccccccCCCCcccccCCCCcccCCcccEEeeecCcCCCCCCc
Q 001998 856 FNDYAPSSSLSLTAFPKLKELTLFHLDGCEEWDFGKEDVIIMPQLCYLDIRFCRKLKSLPD 916 (984)
Q Consensus 856 ~~~l~~~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~ 916 (984)
++.+-+|..|++.+. +++.+.. ...++++|+|+.|.+.+|| +..+|+
T Consensus 370 -----------L~KLYSLvnLDl~~N-~Ie~lde-V~~IG~LPCLE~l~L~~NP-l~~~vd 416 (490)
T KOG1259|consen 370 -----------LRKLYSLVNLDLSSN-QIEELDE-VNHIGNLPCLETLRLTGNP-LAGSVD 416 (490)
T ss_pred -----------hHhhhhheecccccc-chhhHHH-hcccccccHHHHHhhcCCC-ccccch
Confidence 122333333333321 1111111 1225678999999999998 666654
No 43
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.51 E-value=2.5e-06 Score=104.05 Aligned_cols=313 Identities=15% Similarity=0.114 Sum_probs=177.3
Q ss_pred cccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEE---ecCCC---CHHH
Q 001998 180 EVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVC---VSDPF---DEFS 253 (984)
Q Consensus 180 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~---~s~~~---~~~~ 253 (984)
.++||+.+.+.|...+..-.. ....++.+.|..|||||+|++.|..- +.+.+...+--. ...+. ....
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~----g~~~~~lv~G~sGIGKsalv~ev~~~--i~~~~~~~i~~~f~q~~~~ipl~~lvq 74 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSK----GRGEVVLVAGESGIGKSALVNEVHKP--ITQQRGYFIKGKFDQFERNIPLSPLVQ 74 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhC----CCeEEEEEeecCCCcHHHHHHHHHHH--HhccceeeeHhhcccccCCCchHHHHH
Confidence 368999999999999876553 35669999999999999999999873 333321111111 11111 1233
Q ss_pred HHHHHHHHhcCCC-------------------C-----------------Cc-----ccHH-----HHHHHHHHHh-CCC
Q 001998 254 VAKAIIEELEGSA-------------------T-----------------DL-----HELN-----SLLRRIGANI-AGQ 286 (984)
Q Consensus 254 ~~~~i~~~l~~~~-------------------~-----------------~~-----~~~~-----~~~~~l~~~l-~~k 286 (984)
.+++++.++.... . .. ...+ .....+.... +.+
T Consensus 75 ~~r~l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~ 154 (849)
T COG3899 75 AFRDLMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEH 154 (849)
T ss_pred HHHHHHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccC
Confidence 4455554441100 0 00 0000 1222333333 356
Q ss_pred ceEEEEEcCCCCCcCChhhHHHhhcCCC----CCcEEEEEccchH----HHhhcCCCCeEeCCCCChHhHHHHHHHHhcC
Q 001998 287 KFFMVLDNLWTDDYRKWEPFRNCLMNGL----RGSKILLTTRKET----VARMMESTDIVYVQGLSEPECWSLFRRFAFS 358 (984)
Q Consensus 287 r~LlVlDdvw~~~~~~~~~l~~~l~~~~----~gs~iiiTtr~~~----v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~ 358 (984)
+.++|+||+...|....+.+........ ....|..+..... +...-.....+.|.||+..+...+.......
T Consensus 155 plVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~ 234 (849)
T COG3899 155 PLVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGC 234 (849)
T ss_pred CeEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCC
Confidence 9999999996655544444433332221 1123333333222 2222234578999999999999998876533
Q ss_pred CCCCCCchhHHHHHHHHHHhcCCChHHHHHHHHhhccC------CCHHHHHHHHhhhhhhhhhhcccccchhhccccCCC
Q 001998 359 GRTPLECDQLEEIGRGIVRKCKGLPLAAKTIGSLLQFK------RTKEEWQSVLDSEMWQLEEFERGLSAPLFLSYNDLP 432 (984)
Q Consensus 359 ~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~~l~~~------~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~ 432 (984)
... ...+....|++|..|+|+.+.-+-..+... .+...|..=..+ ....... +.+...+..-.+.||
T Consensus 235 ~~~-----~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~-i~~~~~~-~~vv~~l~~rl~kL~ 307 (849)
T COG3899 235 TKL-----LPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIAS-LGILATT-DAVVEFLAARLQKLP 307 (849)
T ss_pred ccc-----ccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHh-cCCchhh-HHHHHHHHHHHhcCC
Confidence 222 234566679999999999999988887653 222333321111 0011111 224456778889999
Q ss_pred hhhhhhhhhcccCCCCCccChHHHHHHHHHcCCcCCCCCchHHHhHHHHHHHHhhcccccceecCCCC---cee-eEEec
Q 001998 433 FEIKRCFSYCAIFPKGSSLKKDELVKLWMAQGYIVPKGNKEMEVIGLEYFDCLASRSFYQQFVKDDDN---MVI-GCTMH 508 (984)
Q Consensus 433 ~~~k~cfl~~~~fp~~~~i~~~~li~~Wiaeg~i~~~~~~~~e~~~~~~~~~L~~r~l~~~~~~~~~~---~~~-~~~~H 508 (984)
...+.-.-..|++-.. |+.+-|...|-. .....+....+.|....++-..+....+ ... |-..|
T Consensus 308 ~~t~~Vl~~AA~iG~~--F~l~~La~l~~~----------~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H 375 (849)
T COG3899 308 GTTREVLKAAACIGNR--FDLDTLAALAED----------SPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLH 375 (849)
T ss_pred HHHHHHHHHHHHhCcc--CCHHHHHHHHhh----------chHHHHHHHHHHhHhhceeccccccccccccchhhHHhhH
Confidence 9999999999998655 456666665521 2344555555555555544322111111 111 22568
Q ss_pred hHHHHHHHH
Q 001998 509 DVVHDFAQF 517 (984)
Q Consensus 509 dlv~~~~~~ 517 (984)
|++++.+-.
T Consensus 376 ~~vqqaaY~ 384 (849)
T COG3899 376 DRVQQAAYN 384 (849)
T ss_pred HHHHHHHhc
Confidence 888887643
No 44
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.51 E-value=2.2e-06 Score=89.02 Aligned_cols=170 Identities=14% Similarity=0.144 Sum_probs=100.4
Q ss_pred cHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHHHHHhc
Q 001998 184 RDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAIIEELE 263 (984)
Q Consensus 184 r~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 263 (984)
.+..++.+..++.. .....+.|+|..|+|||+||+.+++. ........+++.++.-. ...
T Consensus 22 ~~~~~~~l~~~~~~-------~~~~~lll~G~~G~GKT~la~~~~~~--~~~~~~~~~~i~~~~~~------~~~----- 81 (226)
T TIGR03420 22 NAELLAALRQLAAG-------KGDRFLYLWGESGSGKSHLLQAACAA--AEERGKSAIYLPLAELA------QAD----- 81 (226)
T ss_pred cHHHHHHHHHHHhc-------CCCCeEEEECCCCCCHHHHHHHHHHH--HHhcCCcEEEEeHHHHH------HhH-----
Confidence 45677777776532 13457889999999999999999984 32233445666544211 100
Q ss_pred CCCCCcccHHHHHHHHHHHhCCCceEEEEEcCCCCCcC-Ch-hhHHHhhcC-CCCCcEEEEEccchH---------HHhh
Q 001998 264 GSATDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDYR-KW-EPFRNCLMN-GLRGSKILLTTRKET---------VARM 331 (984)
Q Consensus 264 ~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~-~~-~~l~~~l~~-~~~gs~iiiTtr~~~---------v~~~ 331 (984)
.. +...+.+ .-+||+||+..-... .| ..+...+.. ...+.++|+||+... +...
T Consensus 82 ---------~~----~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r 147 (226)
T TIGR03420 82 ---------PE----VLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTR 147 (226)
T ss_pred ---------HH----HHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHH
Confidence 01 1111222 238999999754322 23 334444432 123458999888532 2223
Q ss_pred cCCCCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHHHH
Q 001998 332 MESTDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLPLAAKTIGS 391 (984)
Q Consensus 332 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~ 391 (984)
+.....+++.+++.++...++...+-....... .+..+.+++.+.|.|..+.-+-.
T Consensus 148 ~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~----~~~l~~L~~~~~gn~r~L~~~l~ 203 (226)
T TIGR03420 148 LAWGLVFQLPPLSDEEKIAALQSRAARRGLQLP----DEVADYLLRHGSRDMGSLMALLD 203 (226)
T ss_pred HhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHhccCCHHHHHHHHH
Confidence 333467899999999999998876532222122 34445677788888877665543
No 45
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.50 E-value=1.4e-08 Score=101.40 Aligned_cols=138 Identities=20% Similarity=0.159 Sum_probs=92.8
Q ss_pred cccccCccceEEecCCCccccchhhccCCcccEEecccccccccccccccCCCCCCeEEeccCCCcccCCccCCCCCCCC
Q 001998 609 EIEKLIHLRSLRLAGLKIEELPETCCKLFNLQTLDINECYRLKRLPQGVGSLVNLRHLVVSLNGDLDYLPKGVERLTSLR 688 (984)
Q Consensus 609 ~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~ 688 (984)
.+.....|..||||+|.|+.+-+++.-++.++.|++++|. +..+-+ +..|++|++|++++| .+..+...-.+|.+++
T Consensus 279 ~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~-i~~v~n-La~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIK 355 (490)
T KOG1259|consen 279 SADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNR-IRTVQN-LAELPQLQLLDLSGN-LLAECVGWHLKLGNIK 355 (490)
T ss_pred ecchHhhhhhccccccchhhhhhhhhhccceeEEeccccc-eeeehh-hhhcccceEeecccc-hhHhhhhhHhhhcCEe
Confidence 3455678999999999999999999989999999999988 666655 888999999999988 5555543344566666
Q ss_pred cCCceEecCCCCcccccccccccccccccCCCeeEEcCCCCCCChhhhhHhcccCCCCCCeEEEEEcCCcccccCcCchh
Q 001998 689 TLREFVVSSTGGKYCTKACKVEGLRQLNHLRGTLRIRGLGNVTDVEEAEKADLEKKKNIVGLELRFDKEEAATEGINEEN 768 (984)
Q Consensus 689 ~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~ 768 (984)
+|.+..+... .|.. +.++.+|..|++..|.+..
T Consensus 356 tL~La~N~iE------------~LSG--------------------------L~KLYSLvnLDl~~N~Ie~--------- 388 (490)
T KOG1259|consen 356 TLKLAQNKIE------------TLSG--------------------------LRKLYSLVNLDLSSNQIEE--------- 388 (490)
T ss_pred eeehhhhhHh------------hhhh--------------------------hHhhhhheeccccccchhh---------
Confidence 6655432221 1111 2233355556666554421
Q ss_pred hccHHHHhhcCCCCCCCCeEEEeecCCCCCCCc
Q 001998 769 EINHQAISEALRPPPDLEALEIMHYKGQTAFPS 801 (984)
Q Consensus 769 ~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~lp~ 801 (984)
.+-..+++.+|+|+.|.|.+|++.. +|.
T Consensus 389 ----ldeV~~IG~LPCLE~l~L~~NPl~~-~vd 416 (490)
T KOG1259|consen 389 ----LDEVNHIGNLPCLETLRLTGNPLAG-SVD 416 (490)
T ss_pred ----HHHhcccccccHHHHHhhcCCCccc-cch
Confidence 1234566777778888777777766 554
No 46
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.48 E-value=4.6e-06 Score=90.88 Aligned_cols=179 Identities=17% Similarity=0.179 Sum_probs=117.9
Q ss_pred CcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcC----cccccCCCeEEEEEe-cCCCCHHH
Q 001998 179 SEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYND----NDVINNFEIRVWVCV-SDPFDEFS 253 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~----~~~~~~F~~~~wv~~-s~~~~~~~ 253 (984)
.+++|.+..++.+...+..+. -.....++|+.|+||||+|+.+++. .....|+|...|... +....+++
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~------~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ 77 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNR------FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD 77 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCC------CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH
Confidence 468899999999999986433 3567789999999999999888762 123456676666542 22223322
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCceEEEEEcCCCCCcCChhhHHHhhcCCCCCcEEEEEccchHHH-hh-
Q 001998 254 VAKAIIEELEGSATDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILLTTRKETVA-RM- 331 (984)
Q Consensus 254 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~v~-~~- 331 (984)
.+++.+.+... -..+++=++|+|++...+...++.+...+.....++.+|++|.+.+.. ..
T Consensus 78 -ir~~~~~~~~~----------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI 140 (313)
T PRK05564 78 -IRNIIEEVNKK----------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTI 140 (313)
T ss_pred -HHHHHHHHhcC----------------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHH
Confidence 22233322211 123455577778776555667888999998878899999888765421 21
Q ss_pred cCCCCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCChHHHHH
Q 001998 332 MESTDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLPLAAKT 388 (984)
Q Consensus 332 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~ 388 (984)
......+.+.+++.++....+.+...+ .. .+.++.++..++|.|.-+..
T Consensus 141 ~SRc~~~~~~~~~~~~~~~~l~~~~~~----~~----~~~~~~l~~~~~g~~~~a~~ 189 (313)
T PRK05564 141 KSRCQIYKLNRLSKEEIEKFISYKYND----IK----EEEKKSAIAFSDGIPGKVEK 189 (313)
T ss_pred HhhceeeeCCCcCHHHHHHHHHHHhcC----CC----HHHHHHHHHHcCCCHHHHHH
Confidence 123568999999999998887654311 11 23356788999999875543
No 47
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.47 E-value=5.4e-07 Score=103.02 Aligned_cols=197 Identities=18% Similarity=0.160 Sum_probs=114.7
Q ss_pred CcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHH
Q 001998 179 SEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAI 258 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 258 (984)
.+++|.+..++.|..++.... -...+.++|..|+||||+|+.+++...-.+.+....|.|.+... +.......
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~------l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~-i~~~~h~d 86 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGR------LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLA-VRRGAHPD 86 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCC------CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHH-HhcCCCCc
Confidence 478999999999988886533 34567899999999999999888743212222222333221100 00000000
Q ss_pred HHHhcCC-CCCcccHHHHHHHHHH-HhCCCceEEEEEcCCCCCcCChhhHHHhhcCCCCCcEEEEEccc-hHHHhhc-CC
Q 001998 259 IEELEGS-ATDLHELNSLLRRIGA-NIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILLTTRK-ETVARMM-ES 334 (984)
Q Consensus 259 ~~~l~~~-~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~-~~v~~~~-~~ 334 (984)
+..+... .....++.++...+.. -..+++-++|+|+++......++.+...+......+.+|++|.. ..+...+ ..
T Consensus 87 v~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SR 166 (504)
T PRK14963 87 VLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSR 166 (504)
T ss_pred eEEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcc
Confidence 0000000 0111122222222221 12356669999999766555677777777665556666665544 3333322 33
Q ss_pred CCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCChHHH
Q 001998 335 TDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLPLAA 386 (984)
Q Consensus 335 ~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai 386 (984)
...+++.+++.++..+.+.+.+...+.... .+....|++.++|.+--+
T Consensus 167 c~~~~f~~ls~~el~~~L~~i~~~egi~i~----~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 167 TQHFRFRRLTEEEIAGKLRRLLEAEGREAE----PEALQLVARLADGAMRDA 214 (504)
T ss_pred eEEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 568999999999999999887754432222 345566999999988544
No 48
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.47 E-value=5.3e-06 Score=92.11 Aligned_cols=192 Identities=16% Similarity=0.215 Sum_probs=110.8
Q ss_pred CcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHH
Q 001998 179 SEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAI 258 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 258 (984)
.+++|.+..++.+...+..+. -...+.++|..|+||||+|+.+.+...-...+. ..+.......+++
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~------~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~-------~~pc~~c~~c~~~ 82 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGR------IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGIT-------SNPCRKCIICKEI 82 (363)
T ss_pred hhccChHHHHHHHHHHHHcCC------CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCCCHHHHHH
Confidence 478999999999998886432 345678999999999999999886321000000 0000000111111
Q ss_pred HHHh-------cCC-CCCcccHHHHHHHHHHH-hCCCceEEEEEcCCCCCcCChhhHHHhhcCCCCCcEEEEEccch-HH
Q 001998 259 IEEL-------EGS-ATDLHELNSLLRRIGAN-IAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILLTTRKE-TV 328 (984)
Q Consensus 259 ~~~l-------~~~-~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~-~v 328 (984)
.... ... .....+..++...+... ..+++-++|+|++..-....++.+...+.......++|++|.+. .+
T Consensus 83 ~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l 162 (363)
T PRK14961 83 EKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKI 162 (363)
T ss_pred hcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhh
Confidence 1100 000 00111122222222111 12455699999997655455777777776666677777777553 33
Q ss_pred Hhhc-CCCCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCChHHHH
Q 001998 329 ARMM-ESTDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLPLAAK 387 (984)
Q Consensus 329 ~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~ 387 (984)
...+ +....+++.+++.++..+.+...+...+...+ .+.++.|++.++|.|-.+.
T Consensus 163 ~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i~----~~al~~ia~~s~G~~R~al 218 (363)
T PRK14961 163 PKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDTD----EYALKLIAYHAHGSMRDAL 218 (363)
T ss_pred hHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHH
Confidence 3322 33568999999999999888876644332122 3455668999999885443
No 49
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.47 E-value=1.1e-07 Score=107.99 Aligned_cols=127 Identities=24% Similarity=0.346 Sum_probs=101.8
Q ss_pred ccccCCCceeEEeccCCCcchhhhHHhhhcccc-ccee-cCCCCccccCcccccccCccceEEecCCCccccchhhccCC
Q 001998 560 VSIFNAKKLRSLLIHSPLEVLSPVLKGLFDHLT-YGED-DGGENTVHDIPREIEKLIHLRSLRLAGLKIEELPETCCKLF 637 (984)
Q Consensus 560 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~-~Lrv-~l~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~ 637 (984)
..+...+.+..|.+.++. +.. ++.....+. .|+. ++++|.+..+|..++.+++|+.|++++|.+..+|...+.+.
T Consensus 110 ~~~~~~~~l~~L~l~~n~--i~~-i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~ 186 (394)
T COG4886 110 SELLELTNLTSLDLDNNN--ITD-IPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLS 186 (394)
T ss_pred hhhhcccceeEEecCCcc--ccc-CccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhh
Confidence 344555788999988886 333 233344553 7888 99999999999889999999999999999999999988999
Q ss_pred cccEEecccccccccccccccCCCCCCeEEeccCCCcccCCccCCCCCCCCcCC
Q 001998 638 NLQTLDINECYRLKRLPQGVGSLVNLRHLVVSLNGDLDYLPKGVERLTSLRTLR 691 (984)
Q Consensus 638 ~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~ 691 (984)
+|+.|++++|. +..+|..+..+..|+.|.+++|. ....+..+.+++++..|.
T Consensus 187 ~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~ 238 (394)
T COG4886 187 NLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLE 238 (394)
T ss_pred hhhheeccCCc-cccCchhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccc
Confidence 99999999998 99999988888889999999884 344555566666666554
No 50
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=3.7e-08 Score=103.88 Aligned_cols=63 Identities=24% Similarity=0.305 Sum_probs=40.1
Q ss_pred ccccccCccceEEecCCCccccc--hhhccCCcccEEeccccccccc---ccccccCCCCCCeEEeccC
Q 001998 608 REIEKLIHLRSLRLAGLKIEELP--ETCCKLFNLQTLDINECYRLKR---LPQGVGSLVNLRHLVVSLN 671 (984)
Q Consensus 608 ~~i~~L~~Lr~L~L~~~~i~~lp--~~i~~L~~L~~L~L~~~~~l~~---lP~~i~~L~~L~~L~l~~~ 671 (984)
.-=.++..||...|+++.+...+ .....|++++.|||++|- +.. +-.-...|++|+.|+++.|
T Consensus 115 akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL-~~nw~~v~~i~eqLp~Le~LNls~N 182 (505)
T KOG3207|consen 115 AKQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNL-FHNWFPVLKIAEQLPSLENLNLSSN 182 (505)
T ss_pred HHhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhh-HHhHHHHHHHHHhcccchhcccccc
Confidence 33445777777777777777665 356677777777777764 322 1122356777777777766
No 51
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.46 E-value=3e-07 Score=86.32 Aligned_cols=118 Identities=19% Similarity=0.194 Sum_probs=78.3
Q ss_pred ceEEEEEEecCcchHHHHHHHHhcCcccc---cCCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH
Q 001998 206 TVQIFSMVGMGGIGKTTLAQLAYNDNDVI---NNFEIRVWVCVSDPFDEFSVAKAIIEELEGSATDLHELNSLLRRIGAN 282 (984)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 282 (984)
+.+++.|+|.+|+|||++++.+.++.... ..-..++|+.+....+...+...|++++........+...+.+.+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 45689999999999999999998842110 013456799998888999999999999987765545566666777777
Q ss_pred hCCCc-eEEEEEcCCCC-CcCChhhHHHhhcCCCCCcEEEEEccc
Q 001998 283 IAGQK-FFMVLDNLWTD-DYRKWEPFRNCLMNGLRGSKILLTTRK 325 (984)
Q Consensus 283 l~~kr-~LlVlDdvw~~-~~~~~~~l~~~l~~~~~gs~iiiTtr~ 325 (984)
+...+ .+||+|++..- +...++.+.. +.+ ..+.+||+..+.
T Consensus 83 l~~~~~~~lviDe~~~l~~~~~l~~l~~-l~~-~~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLFSDEFLEFLRS-LLN-ESNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHHTHHHHHHHHH-HTC-SCBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcCCHHHHHHHHH-HHh-CCCCeEEEEECh
Confidence 76554 59999999543 3223333333 223 566778777664
No 52
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.45 E-value=4.4e-08 Score=94.72 Aligned_cols=79 Identities=25% Similarity=0.305 Sum_probs=22.3
Q ss_pred cccccee-cCCCCccccCccccc-ccCccceEEecCCCccccchhhccCCcccEEecccccccccccccc-cCCCCCCeE
Q 001998 590 HLTYGED-DGGENTVHDIPREIE-KLIHLRSLRLAGLKIEELPETCCKLFNLQTLDINECYRLKRLPQGV-GSLVNLRHL 666 (984)
Q Consensus 590 ~l~~Lrv-~l~~~~i~~lp~~i~-~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i-~~L~~L~~L 666 (984)
+...++. ++.+|.|..+. .++ .+.+|+.|+|++|.|+.++ .+..|++|++|++++|. ++.++..+ ..+++|++|
T Consensus 17 n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~-I~~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNR-ISSISEGLDKNLPNLQEL 93 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHHH-TT--EE
T ss_pred ccccccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCC-CCccccchHHhCCcCCEE
Confidence 3334555 77777766653 344 4667777777777777664 45667777777777766 66665444 356777777
Q ss_pred EeccC
Q 001998 667 VVSLN 671 (984)
Q Consensus 667 ~l~~~ 671 (984)
++++|
T Consensus 94 ~L~~N 98 (175)
T PF14580_consen 94 YLSNN 98 (175)
T ss_dssp E-TTS
T ss_pred ECcCC
Confidence 77666
No 53
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.44 E-value=1.2e-06 Score=92.29 Aligned_cols=173 Identities=20% Similarity=0.259 Sum_probs=102.8
Q ss_pred cCCcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHH
Q 001998 177 DVSEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAK 256 (984)
Q Consensus 177 ~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 256 (984)
...+++|-...+.++++ ...+.-...||++|+||||||+.+... ....| ..+|...+-.+-
T Consensus 28 GQ~HLlg~~~~lrr~v~----------~~~l~SmIl~GPPG~GKTTlA~liA~~--~~~~f-----~~~sAv~~gvkd-- 88 (436)
T COG2256 28 GQEHLLGEGKPLRRAVE----------AGHLHSMILWGPPGTGKTTLARLIAGT--TNAAF-----EALSAVTSGVKD-- 88 (436)
T ss_pred ChHhhhCCCchHHHHHh----------cCCCceeEEECCCCCCHHHHHHHHHHh--hCCce-----EEeccccccHHH--
Confidence 34456666666666654 235666779999999999999999983 44444 233333322222
Q ss_pred HHHHHhcCCCCCcccHHHHHHHH-HHHhCCCceEEEEEcCCCCCcCChhhHHHhhcCCCCCcEEEE--EccchH--H-Hh
Q 001998 257 AIIEELEGSATDLHELNSLLRRI-GANIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILL--TTRKET--V-AR 330 (984)
Q Consensus 257 ~i~~~l~~~~~~~~~~~~~~~~l-~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iii--Ttr~~~--v-~~ 330 (984)
+..+.+.- +....+++.+|++|.|..-+..+-+.+ ||.-..|.-|+| ||-+.. + ..
T Consensus 89 ---------------lr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~l---Lp~vE~G~iilIGATTENPsF~ln~A 150 (436)
T COG2256 89 ---------------LREIIEEARKNRLLGRRTILFLDEIHRFNKAQQDAL---LPHVENGTIILIGATTENPSFELNPA 150 (436)
T ss_pred ---------------HHHHHHHHHHHHhcCCceEEEEehhhhcChhhhhhh---hhhhcCCeEEEEeccCCCCCeeecHH
Confidence 23333322 223458999999999965443333333 454556777776 666643 1 22
Q ss_pred hcCCCCeEeCCCCChHhHHHHHHHHhcCCCCCCC--chhH-HHHHHHHHHhcCCChHHH
Q 001998 331 MMESTDIVYVQGLSEPECWSLFRRFAFSGRTPLE--CDQL-EEIGRGIVRKCKGLPLAA 386 (984)
Q Consensus 331 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~--~~~l-~~~~~~i~~~~~GlPLai 386 (984)
......++.+++|+.++..+++.+.+........ ...+ ++.-.-++..++|---++
T Consensus 151 LlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~a 209 (436)
T COG2256 151 LLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRA 209 (436)
T ss_pred HhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHH
Confidence 2345679999999999999999883322111111 0111 334455788888765443
No 54
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.43 E-value=4.4e-06 Score=96.55 Aligned_cols=183 Identities=16% Similarity=0.160 Sum_probs=114.4
Q ss_pred CcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccc-------------------cCCCe
Q 001998 179 SEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVI-------------------NNFEI 239 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~~ 239 (984)
.+++|.+..++.|.+++.... -...+.++|..|+||||+|+.+.+...-. +.|..
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gR------L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~D 89 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGR------LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVD 89 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCC------CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCce
Confidence 579999999999999986432 34566799999999999998777632111 11111
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHH-HhCCCceEEEEEcCCCCCcCChhhHHHhhcCCCCCcE
Q 001998 240 RVWVCVSDPFDEFSVAKAIIEELEGSATDLHELNSLLRRIGA-NIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSK 318 (984)
Q Consensus 240 ~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ 318 (984)
++++..+....+ .++.++++.... -..++.-++|||++...+...|+.+...+.......+
T Consensus 90 viEIDAas~rgV------------------DdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~ 151 (830)
T PRK07003 90 YVEMDAASNRGV------------------DEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVK 151 (830)
T ss_pred EEEecccccccH------------------HHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeE
Confidence 223322211111 112222222211 1134555889999977666668888877776666788
Q ss_pred EEEEccchH-HHhh-cCCCCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCChH-HHHHH
Q 001998 319 ILLTTRKET-VARM-MESTDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLPL-AAKTI 389 (984)
Q Consensus 319 iiiTtr~~~-v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlPL-ai~~~ 389 (984)
+|+||++.. +... ......+.+..++.++..+.+.+.....+...+ .+..+.|++.++|..- |+..+
T Consensus 152 FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id----~eAL~lIA~~A~GsmRdALsLL 221 (830)
T PRK07003 152 FILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFE----PQALRLLARAAQGSMRDALSLT 221 (830)
T ss_pred EEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 888877743 3222 233578999999999999999887644332222 3445669999988653 44443
No 55
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.43 E-value=4.5e-06 Score=95.49 Aligned_cols=183 Identities=15% Similarity=0.154 Sum_probs=113.9
Q ss_pred CcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccc-------------------cCCCe
Q 001998 179 SEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVI-------------------NNFEI 239 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~~ 239 (984)
.+++|.+...+.|..++..+. -...+.++|..|+||||+|+.+.+...-. +.|--
T Consensus 15 ddVIGQe~vv~~L~~aI~~gr------l~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpD 88 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGR------LHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFID 88 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCC------CCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCc
Confidence 579999999999999986433 35678899999999999999887631100 11111
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHH-HHhCCCceEEEEEcCCCCCcCChhhHHHhhcCCCCCcE
Q 001998 240 RVWVCVSDPFDEFSVAKAIIEELEGSATDLHELNSLLRRIG-ANIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSK 318 (984)
Q Consensus 240 ~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~-~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ 318 (984)
++.+..+....+ .++.++..... .-..+++-++|+|++..-+......+...+.....+.+
T Consensus 89 viEIDAAs~~~V------------------ddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~ 150 (702)
T PRK14960 89 LIEIDAASRTKV------------------EDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVK 150 (702)
T ss_pred eEEecccccCCH------------------HHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcE
Confidence 222222211111 11222222211 11235666899999976555566777777766556678
Q ss_pred EEEEccch-HHHh-hcCCCCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHH
Q 001998 319 ILLTTRKE-TVAR-MMESTDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLPLAAKTI 389 (984)
Q Consensus 319 iiiTtr~~-~v~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~ 389 (984)
+|++|.+. .+.. .......+++.+++.++..+.+.+.+...+.... .+....|++.++|.+-.+..+
T Consensus 151 FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id----~eAL~~IA~~S~GdLRdALnL 219 (702)
T PRK14960 151 FLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAAD----QDAIWQIAESAQGSLRDALSL 219 (702)
T ss_pred EEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 88777653 2222 2234578999999999999988877654333222 344556999999977554433
No 56
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.42 E-value=1.8e-08 Score=105.58 Aligned_cols=163 Identities=17% Similarity=0.192 Sum_probs=106.9
Q ss_pred hcCCCCCCCCeEEEeecCCCCCCCch-hh-cCCCCcEEEEeCcCCCCcC--CC-CCCCCCcceeeeccccCceEecceec
Q 001998 777 EALRPPPDLEALEIMHYKGQTAFPSW-IV-SLNKLKKLKLSSCCKCEIM--PP-LGALPSLEILQIQRMESVKRVGVEFL 851 (984)
Q Consensus 777 ~~l~~~~~L~~L~L~~~~~~~~lp~~-l~-~l~~L~~L~L~~~~~~~~l--~~-l~~Lp~L~~L~L~~~~~l~~~~~~~~ 851 (984)
..-..+..|+.|+.+++...+..+-| ++ +.++|+.|.++.|...... .. -.+.+.|+.+++.+|..+... ++.
T Consensus 288 ~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~--tL~ 365 (483)
T KOG4341|consen 288 LIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG--TLA 365 (483)
T ss_pred HHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh--hHh
Confidence 33344567888888888765544433 22 6789999999999765432 22 346788888888877633221 111
Q ss_pred CccCCCCCCCCCCccCcccccccccccccCCCCccccc--CCCCcccCCcccEEeeecCcCCCC-CCcCCCCCCCcCeEE
Q 001998 852 GIESFNDYAPSSSLSLTAFPKLKELTLFHLDGCEEWDF--GKEDVIIMPQLCYLDIRFCRKLKS-LPDQLLQSSTLEKLR 928 (984)
Q Consensus 852 ~~~~~~~l~~~~~~~~~~f~~L~~L~l~~l~~l~~~~~--~~~~~~~l~~L~~L~l~~c~~l~~-lp~~~~~l~~L~~L~ 928 (984)
.. ..++|.|+.|.+++|....+..+ ......++..|+.+++++||.+.+ .-..+..+++|+.++
T Consensus 366 sl-------------s~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~ 432 (483)
T KOG4341|consen 366 SL-------------SRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIE 432 (483)
T ss_pred hh-------------ccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceee
Confidence 11 34789999999998876655522 222234688999999999997755 223456788999999
Q ss_pred eccCcchHHhhccCCCCCccccccccceeecC
Q 001998 929 IIRAPILRERFKKDTGEDWSKISHIRDIQIDH 960 (984)
Q Consensus 929 i~~c~~l~~~~~~~~~~~~~~i~~i~~l~~~~ 960 (984)
+.+|.......- + +-..|+|++.++.
T Consensus 433 l~~~q~vtk~~i----~--~~~~~lp~i~v~a 458 (483)
T KOG4341|consen 433 LIDCQDVTKEAI----S--RFATHLPNIKVHA 458 (483)
T ss_pred eechhhhhhhhh----H--HHHhhCccceehh
Confidence 999987553211 1 1236888887764
No 57
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.41 E-value=5.1e-07 Score=90.62 Aligned_cols=48 Identities=25% Similarity=0.421 Sum_probs=32.6
Q ss_pred cccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCc
Q 001998 180 EVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDN 231 (984)
Q Consensus 180 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 231 (984)
.|+||+++++++...|.... ....+.+.|+|.+|+|||+|++.++...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~----~~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQ----SGSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTS----S-----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHH----cCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999995222 3456899999999999999999998843
No 58
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.41 E-value=5.3e-06 Score=97.89 Aligned_cols=183 Identities=16% Similarity=0.187 Sum_probs=114.8
Q ss_pred CcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccC-------------------CCe
Q 001998 179 SEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINN-------------------FEI 239 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------F~~ 239 (984)
.+++|.+..++.|.+++..+. -...+.++|..|+||||+|+.+++...-... |.-
T Consensus 16 ddIIGQe~Iv~~LknaI~~~r------l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~D 89 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQR------LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVD 89 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCC------CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCce
Confidence 579999999999999886432 3456689999999999999999874211101 111
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHH-HhCCCceEEEEEcCCCCCcCChhhHHHhhcCCCCCcE
Q 001998 240 RVWVCVSDPFDEFSVAKAIIEELEGSATDLHELNSLLRRIGA-NIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSK 318 (984)
Q Consensus 240 ~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ 318 (984)
++++..+.... ..++.++...+.. ...+++-++|||++........+.|...+-......+
T Consensus 90 viEidAas~~k------------------VDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vr 151 (944)
T PRK14949 90 LIEVDAASRTK------------------VDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVK 151 (944)
T ss_pred EEEeccccccC------------------HHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeE
Confidence 12221111111 1122222222221 1246777999999977666677777777766555667
Q ss_pred EEEEccc-hHHHhh-cCCCCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHH
Q 001998 319 ILLTTRK-ETVARM-MESTDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLPLAAKTI 389 (984)
Q Consensus 319 iiiTtr~-~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~ 389 (984)
+|++|.+ ..+... ......|++.+++.++....+.+.+-..+... -.+....|++.++|.|--+..+
T Consensus 152 FILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~~----edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 152 FLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLPF----EAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred EEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHH
Confidence 6666655 334322 23357899999999999999888664322211 2345566999999988654444
No 59
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.40 E-value=4.7e-05 Score=89.96 Aligned_cols=203 Identities=18% Similarity=0.178 Sum_probs=120.1
Q ss_pred CcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCC---CeEEEEEecC---CCCHH
Q 001998 179 SEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNF---EIRVWVCVSD---PFDEF 252 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~~s~---~~~~~ 252 (984)
++++|++..+..+.+.+... ....+.|+|.+|+||||+|+.+++.......+ ...-|+.+.. ..+..
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~-------~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~ 226 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASP-------FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPR 226 (615)
T ss_pred HhceeCcHHHHHHHHHHhcC-------CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHH
Confidence 46899999999988777432 24468999999999999999998754332322 1233554432 12222
Q ss_pred HHHHHH---------------HHHhcCCC----------------CCcccH-HHHHHHHHHHhCCCceEEEEEcCCCCCc
Q 001998 253 SVAKAI---------------IEELEGSA----------------TDLHEL-NSLLRRIGANIAGQKFFMVLDNLWTDDY 300 (984)
Q Consensus 253 ~~~~~i---------------~~~l~~~~----------------~~~~~~-~~~~~~l~~~l~~kr~LlVlDdvw~~~~ 300 (984)
.+...+ +...+... .+...+ ...+..+.+.++++++.++-|+.|..+.
T Consensus 227 ~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~ 306 (615)
T TIGR02903 227 EVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDP 306 (615)
T ss_pred HHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCc
Confidence 221111 11111000 000111 2357788888999999999888888777
Q ss_pred CChhhHHHhhcCCCCCcEEEE--EccchHH-Hhhc-CCCCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHH
Q 001998 301 RKWEPFRNCLMNGLRGSKILL--TTRKETV-ARMM-ESTDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIV 376 (984)
Q Consensus 301 ~~~~~l~~~l~~~~~gs~iii--Ttr~~~v-~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~ 376 (984)
..|+.+...+..+.+...|++ ||++... ...+ .....+.+.+++.++.+.++.+.+-.... ... .++.+.|.
T Consensus 307 ~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v-~ls---~eal~~L~ 382 (615)
T TIGR02903 307 NVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINV-HLA---AGVEELIA 382 (615)
T ss_pred ccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHH
Confidence 788888877776666555555 5665331 1111 22346788999999999999987643211 111 23334455
Q ss_pred HhcCCChHHHHHHHHh
Q 001998 377 RKCKGLPLAAKTIGSL 392 (984)
Q Consensus 377 ~~~~GlPLai~~~~~~ 392 (984)
+.+..-+-|+..++.+
T Consensus 383 ~ys~~gRraln~L~~~ 398 (615)
T TIGR02903 383 RYTIEGRKAVNILADV 398 (615)
T ss_pred HCCCcHHHHHHHHHHH
Confidence 5444335555555443
No 60
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.40 E-value=7.1e-06 Score=93.42 Aligned_cols=194 Identities=14% Similarity=0.194 Sum_probs=113.5
Q ss_pred CcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCe-EEEEEecCCCCHHHHHHH
Q 001998 179 SEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEI-RVWVCVSDPFDEFSVAKA 257 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~~s~~~~~~~~~~~ 257 (984)
.+++|.+..++.+...+..+. -...+.++|..|+||||+|+.+++...-...... -.+. ......-...
T Consensus 21 ~dliGq~~vv~~L~~ai~~~r------i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~----~C~~C~~C~~ 90 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDR------LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIK----TCEQCTNCIS 90 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCC------CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcC----CCCCChHHHH
Confidence 478999999999988775432 3457889999999999999999873211100000 0000 0000000111
Q ss_pred HHHH-------hcC-CCCCcccHHHHHHHHHH-HhCCCceEEEEEcCCCCCcCChhhHHHhhcCCCCCcEEEE-EccchH
Q 001998 258 IIEE-------LEG-SATDLHELNSLLRRIGA-NIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILL-TTRKET 327 (984)
Q Consensus 258 i~~~-------l~~-~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iii-Ttr~~~ 327 (984)
|... +.. +.....++.++.+.... -..+++-++|+|+++.-....|..+...+......+.+|+ ||+...
T Consensus 91 i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~k 170 (507)
T PRK06645 91 FNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQK 170 (507)
T ss_pred HhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHH
Confidence 1000 000 01111222222222211 1346677999999987666678888887776666667655 555555
Q ss_pred HHhhc-CCCCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCChHHH
Q 001998 328 VARMM-ESTDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLPLAA 386 (984)
Q Consensus 328 v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai 386 (984)
+...+ .....+++.+++.++....+.+.+...+...+ .+....|++.++|.+--+
T Consensus 171 I~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie----~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 171 IPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTD----IEALRIIAYKSEGSARDA 226 (507)
T ss_pred hhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 54433 33568899999999999999888754433222 334455889999977444
No 61
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=1.4e-07 Score=99.61 Aligned_cols=153 Identities=18% Similarity=0.045 Sum_probs=106.2
Q ss_pred ccceeEEEEEecCccccc--ccccCCCceeEEeccCCCcchhhhHHhhhccccccee-cCCCCccccCccc--ccccCcc
Q 001998 542 QDKLRHSILVLDKVASFP--VSIFNAKKLRSLLIHSPLEVLSPVLKGLFDHLTYGED-DGGENTVHDIPRE--IEKLIHL 616 (984)
Q Consensus 542 ~~~~r~l~l~~~~~~~~~--~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lrv-~l~~~~i~~lp~~--i~~L~~L 616 (984)
..++|.+++.++.++..+ .-...|+++|.|+++.|-.........+...++.|+. +++.|.+...-++ -..+.||
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l 199 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL 199 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence 346777777777666433 2456899999999999874444445666788999999 9998886543322 2368899
Q ss_pred ceEEecCCCcc--ccchhhccCCcccEEecccccccccccccccCCCCCCeEEeccCCCcccCC--ccCCCCCCCCcCCc
Q 001998 617 RSLRLAGLKIE--ELPETCCKLFNLQTLDINECYRLKRLPQGVGSLVNLRHLVVSLNGDLDYLP--KGVERLTSLRTLRE 692 (984)
Q Consensus 617 r~L~L~~~~i~--~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~~p--~~i~~l~~L~~L~~ 692 (984)
+.|.|++|.++ .+-.....+++|+.|+|..|..+..-......+..|+.|++++|+. ...+ .-++.++.|..|.+
T Consensus 200 K~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~l-i~~~~~~~~~~l~~L~~Lnl 278 (505)
T KOG3207|consen 200 KQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNL-IDFDQGYKVGTLPGLNQLNL 278 (505)
T ss_pred heEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcc-cccccccccccccchhhhhc
Confidence 99999999987 4445556788999999999853433333345577899999998844 3444 23666777776665
Q ss_pred eEe
Q 001998 693 FVV 695 (984)
Q Consensus 693 ~~~ 695 (984)
..+
T Consensus 279 s~t 281 (505)
T KOG3207|consen 279 SST 281 (505)
T ss_pred ccc
Confidence 443
No 62
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.38 E-value=5.4e-07 Score=93.03 Aligned_cols=89 Identities=21% Similarity=0.144 Sum_probs=62.1
Q ss_pred eEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCC--CCHHHHHHHHHHHhcCCCCCccc---H---HHHHHH
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDP--FDEFSVAKAIIEELEGSATDLHE---L---NSLLRR 278 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~--~~~~~~~~~i~~~l~~~~~~~~~---~---~~~~~~ 278 (984)
-..++|+|.+|+|||||++.+|++.... +|+..+|++++.+ +++.++++.+...+-....+... . ......
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~ 94 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEK 94 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHH
Confidence 4578899999999999999999975444 8999999998877 89999999994333221111111 1 122222
Q ss_pred HHHH-hCCCceEEEEEcCC
Q 001998 279 IGAN-IAGQKFFMVLDNLW 296 (984)
Q Consensus 279 l~~~-l~~kr~LlVlDdvw 296 (984)
.... -.+++.++++|++.
T Consensus 95 a~~~~~~G~~vll~iDei~ 113 (249)
T cd01128 95 AKRLVEHGKDVVILLDSIT 113 (249)
T ss_pred HHHHHHCCCCEEEEEECHH
Confidence 2222 35899999999993
No 63
>PF13173 AAA_14: AAA domain
Probab=98.37 E-value=1.4e-06 Score=81.09 Aligned_cols=119 Identities=24% Similarity=0.234 Sum_probs=78.2
Q ss_pred EEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCc
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAIIEELEGSATDLHELNSLLRRIGANIAGQK 287 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 287 (984)
+++.|.|+-|+|||||+++++.+.. ....+++++..+........ .+ +.+.+.+....++
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~----------------~~-~~~~~~~~~~~~~ 62 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLAD----------------PD-LLEYFLELIKPGK 62 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhh----------------hh-hHHHHHHhhccCC
Confidence 5889999999999999999987422 33456677655432211000 00 2233333334478
Q ss_pred eEEEEEcCCCCCcCChhhHHHhhcCCCCCcEEEEEccchHHHhh------cCCCCeEeCCCCChHhH
Q 001998 288 FFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILLTTRKETVARM------MESTDIVYVQGLSEPEC 348 (984)
Q Consensus 288 ~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~v~~~------~~~~~~~~l~~L~~~~~ 348 (984)
.+|+||++.. ...|......+.+..+..+||+|+.+...... .+....+++.||+-.|.
T Consensus 63 ~~i~iDEiq~--~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 63 KYIFIDEIQY--LPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred cEEEEehhhh--hccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 8999999955 35687766666665567899999998765532 12345788999987764
No 64
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=3e-05 Score=85.06 Aligned_cols=207 Identities=15% Similarity=0.193 Sum_probs=132.4
Q ss_pred CCcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCC-e-EEEEEecCCCCHHHHH
Q 001998 178 VSEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFE-I-RVWVCVSDPFDEFSVA 255 (984)
Q Consensus 178 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~-~~wv~~s~~~~~~~~~ 255 (984)
+..+.+|+++++++...|...-.+ ....-+.|+|..|.|||+.++.|.+. ++.... . +++|++-...+...++
T Consensus 16 P~~l~~Re~ei~~l~~~l~~~~~~---~~p~n~~iyG~~GTGKT~~~~~v~~~--l~~~~~~~~~~yINc~~~~t~~~i~ 90 (366)
T COG1474 16 PEELPHREEEINQLASFLAPALRG---ERPSNIIIYGPTGTGKTATVKFVMEE--LEESSANVEVVYINCLELRTPYQVL 90 (366)
T ss_pred cccccccHHHHHHHHHHHHHHhcC---CCCccEEEECCCCCCHhHHHHHHHHH--HHhhhccCceEEEeeeeCCCHHHHH
Confidence 345899999999999988754321 12223889999999999999999984 433321 2 7899999999999999
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHHHhC--CCceEEEEEcCCCCCcCChhhHHHhhcCCCC-CcEE--EEEccchHHHh
Q 001998 256 KAIIEELEGSATDLHELNSLLRRIGANIA--GQKFFMVLDNLWTDDYRKWEPFRNCLMNGLR-GSKI--LLTTRKETVAR 330 (984)
Q Consensus 256 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~-gs~i--iiTtr~~~v~~ 330 (984)
..|++++...+.......+....+.+.+. ++.++||||++..-....-+.+...+..... .++| |..+.+.....
T Consensus 91 ~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~ 170 (366)
T COG1474 91 SKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLD 170 (366)
T ss_pred HHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHH
Confidence 99999997544444555566666666664 6889999999954221111334444443322 3443 33444443333
Q ss_pred h--------cCCCCeEeCCCCChHhHHHHHHHHhcCCCC--CCCchhHHHHHHHHHHhcCCChHHHHHHH
Q 001998 331 M--------MESTDIVYVQGLSEPECWSLFRRFAFSGRT--PLECDQLEEIGRGIVRKCKGLPLAAKTIG 390 (984)
Q Consensus 331 ~--------~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~--~~~~~~l~~~~~~i~~~~~GlPLai~~~~ 390 (984)
. ++.. .+...|-+.+|-..++..++-..-. ...+..++-++...++..|-.-.|+..+-
T Consensus 171 ~ld~rv~s~l~~~-~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr 239 (366)
T COG1474 171 YLDPRVKSSLGPS-EIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILR 239 (366)
T ss_pred HhhhhhhhccCcc-eeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHH
Confidence 2 2333 3778999999999999888743221 12233444444444455544555555443
No 65
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.35 E-value=8.2e-06 Score=90.61 Aligned_cols=196 Identities=14% Similarity=0.116 Sum_probs=108.0
Q ss_pred CcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCC-eEEEEEecCCCCHHHHHHH
Q 001998 179 SEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFE-IRVWVCVSDPFDEFSVAKA 257 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~s~~~~~~~~~~~ 257 (984)
.+++|++..++.+..++..+ ..+.+.++|..|+||||+|+.+.+... ...+. ..+.++++.-.+. ....
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~-------~~~~lll~Gp~GtGKT~la~~~~~~l~-~~~~~~~~~~i~~~~~~~~--~~~~ 84 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSP-------NLPHLLVQGPPGSGKTAAVRALARELY-GDPWENNFTEFNVADFFDQ--GKKY 84 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCC-------CCceEEEECCCCCCHHHHHHHHHHHhc-CcccccceEEechhhhhhc--chhh
Confidence 57899999999999988542 233577999999999999999887321 11222 2344444321100 0000
Q ss_pred HH------HHhcCC-CCCcccHHHHHHHHHH---Hh--CCCceEEEEEcCCCCCcCChhhHHHhhcCCCCCcEEEEEccc
Q 001998 258 II------EELEGS-ATDLHELNSLLRRIGA---NI--AGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILLTTRK 325 (984)
Q Consensus 258 i~------~~l~~~-~~~~~~~~~~~~~l~~---~l--~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~ 325 (984)
+. ...... .......+.....++. .. .+.+-+||+||+..-.......+...+......+++|+||..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~ 164 (337)
T PRK12402 85 LVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQ 164 (337)
T ss_pred hhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCC
Confidence 00 000000 0000111222221211 11 234558999999554333344465555544456778888754
Q ss_pred hH-HHhhc-CCCCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCChHHHHH
Q 001998 326 ET-VARMM-ESTDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLPLAAKT 388 (984)
Q Consensus 326 ~~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~ 388 (984)
.. +...+ .....+.+.+++.++...++...+...+.... .+..+.+++.++|.+-.+..
T Consensus 165 ~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~----~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 165 PSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYD----DDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred hhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHH
Confidence 32 22222 22457889999999999988887643332222 44556688888887655433
No 66
>PRK04195 replication factor C large subunit; Provisional
Probab=98.35 E-value=3.3e-05 Score=89.33 Aligned_cols=186 Identities=17% Similarity=0.163 Sum_probs=112.9
Q ss_pred CCcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHH
Q 001998 178 VSEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKA 257 (984)
Q Consensus 178 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 257 (984)
-.+++|.++.++.+..|+..... +...+.+.|+|.+|+||||+|+.+++.. .|+ .+-++.+...+.. ....
T Consensus 13 l~dlvg~~~~~~~l~~~l~~~~~---g~~~~~lLL~GppG~GKTtla~ala~el----~~~-~ielnasd~r~~~-~i~~ 83 (482)
T PRK04195 13 LSDVVGNEKAKEQLREWIESWLK---GKPKKALLLYGPPGVGKTSLAHALANDY----GWE-VIELNASDQRTAD-VIER 83 (482)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhc---CCCCCeEEEECCCCCCHHHHHHHHHHHc----CCC-EEEEcccccccHH-HHHH
Confidence 35799999999999999865331 1236789999999999999999999842 132 3334444433222 2333
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHHHhC-CCceEEEEEcCCCCCc----CChhhHHHhhcCCCCCcEEEEEccchH-HHh-
Q 001998 258 IIEELEGSATDLHELNSLLRRIGANIA-GQKFFMVLDNLWTDDY----RKWEPFRNCLMNGLRGSKILLTTRKET-VAR- 330 (984)
Q Consensus 258 i~~~l~~~~~~~~~~~~~~~~l~~~l~-~kr~LlVlDdvw~~~~----~~~~~l~~~l~~~~~gs~iiiTtr~~~-v~~- 330 (984)
++....... .+. .++-+||+|+++.-.. ..+..+...+.. .+..||+|+.+.. ...
T Consensus 84 ~i~~~~~~~---------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k 146 (482)
T PRK04195 84 VAGEAATSG---------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLR 146 (482)
T ss_pred HHHHhhccC---------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchh
Confidence 332221110 011 3677999999965322 234555555543 2345666665421 111
Q ss_pred hc-CCCCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHHHHhh
Q 001998 331 MM-ESTDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLPLAAKTIGSLL 393 (984)
Q Consensus 331 ~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~~l 393 (984)
.+ .....+.+.+++.++....+.+.+...+.... .+....|++.++|-.-.+......+
T Consensus 147 ~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~----~eaL~~Ia~~s~GDlR~ain~Lq~~ 206 (482)
T PRK04195 147 ELRNACLMIEFKRLSTRSIVPVLKRICRKEGIECD----DEALKEIAERSGGDLRSAINDLQAI 206 (482)
T ss_pred hHhccceEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 11 23467889999999999888877654333222 3455679999998776655443333
No 67
>PTZ00202 tuzin; Provisional
Probab=98.34 E-value=1.7e-05 Score=85.32 Aligned_cols=170 Identities=14% Similarity=0.159 Sum_probs=106.9
Q ss_pred cccccCCcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHH
Q 001998 173 TSLIDVSEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEF 252 (984)
Q Consensus 173 ~~~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 252 (984)
..+.+...|+||+++..++...|...+. ...+++.|+|++|.|||||++.+.... . + ...+++ ..+..
T Consensus 256 ~lPa~~~~FVGReaEla~Lr~VL~~~d~----~~privvLtG~~G~GKTTLlR~~~~~l--~--~-~qL~vN---prg~e 323 (550)
T PTZ00202 256 SAPAVIRQFVSREAEESWVRQVLRRLDT----AHPRIVVFTGFRGCGKSSLCRSAVRKE--G--M-PAVFVD---VRGTE 323 (550)
T ss_pred CCCCCccCCCCcHHHHHHHHHHHhccCC----CCceEEEEECCCCCCHHHHHHHHHhcC--C--c-eEEEEC---CCCHH
Confidence 3455677999999999999999865432 235699999999999999999998632 1 1 122222 22779
Q ss_pred HHHHHHHHHhcCCCCCcc--cHHHHHHHHHHHh-C-CCceEEEEEcCCCCC-cCChhhHHHhhcCCCCCcEEEEEccchH
Q 001998 253 SVAKAIIEELEGSATDLH--ELNSLLRRIGANI-A-GQKFFMVLDNLWTDD-YRKWEPFRNCLMNGLRGSKILLTTRKET 327 (984)
Q Consensus 253 ~~~~~i~~~l~~~~~~~~--~~~~~~~~l~~~l-~-~kr~LlVlDdvw~~~-~~~~~~l~~~l~~~~~gs~iiiTtr~~~ 327 (984)
++++.|+.+++.+..... -.+.+.+.+.+.- . +++.+||+-=-+-.+ ...+.+. -.|.....-|+|++----+.
T Consensus 324 ElLr~LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~-v~la~drr~ch~v~evples 402 (550)
T PTZ00202 324 DTLRSVVKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEV-VALACDRRLCHVVIEVPLES 402 (550)
T ss_pred HHHHHHHHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHH-HHHHccchhheeeeeehHhh
Confidence 999999999997433221 1234444444322 3 677777774321111 1122221 12445566778887665544
Q ss_pred HHhhc---CCCCeEeCCCCChHhHHHHHHHH
Q 001998 328 VARMM---ESTDIVYVQGLSEPECWSLFRRF 355 (984)
Q Consensus 328 v~~~~---~~~~~~~l~~L~~~~~~~lf~~~ 355 (984)
+.-.. ....-|.+.+++.++|.++-.+.
T Consensus 403 lt~~~~~lprldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 403 LTIANTLLPRLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred cchhcccCccceeEecCCCCHHHHHHHHhhc
Confidence 32221 22457889999999998876654
No 68
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.33 E-value=3.3e-06 Score=81.07 Aligned_cols=125 Identities=16% Similarity=0.110 Sum_probs=73.7
Q ss_pred cccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHHHHH
Q 001998 182 RGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAIIEE 261 (984)
Q Consensus 182 ~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~ 261 (984)
+|++..++.+...+... ..+.+.|+|.+|+||||+|+.+++... ..-..++++..............+...
T Consensus 1 ~~~~~~~~~i~~~~~~~-------~~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~ 71 (151)
T cd00009 1 VGQEEAIEALREALELP-------PPKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLLEGLVVAELFGHF 71 (151)
T ss_pred CchHHHHHHHHHHHhCC-------CCCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhhhhhhhHHHHHhhhh
Confidence 47888999998888642 245788999999999999999998422 222345666655433322221111100
Q ss_pred hcCCCCCcccHHHHHHHHHHHhCCCceEEEEEcCCCCCcCChhhHHHhhcCC------CCCcEEEEEccchH
Q 001998 262 LEGSATDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNG------LRGSKILLTTRKET 327 (984)
Q Consensus 262 l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~------~~gs~iiiTtr~~~ 327 (984)
............++.++|+||++.........+...+... ..+..||+||....
T Consensus 72 ------------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 ------------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ------------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0111112233466789999999753222223344433332 35778888888653
No 69
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.33 E-value=8.5e-06 Score=93.01 Aligned_cols=196 Identities=16% Similarity=0.183 Sum_probs=113.0
Q ss_pred CcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCccccc---CCCeEEEEEecCCCCHHHHH
Q 001998 179 SEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVIN---NFEIRVWVCVSDPFDEFSVA 255 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~F~~~~wv~~s~~~~~~~~~ 255 (984)
.++||.+..++.|.+++.... -...+.++|..|+||||+|+.+.+...-.. .... .+..+......
T Consensus 16 ddVIGQe~vv~~L~~al~~gR------LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~-----~~~PCG~C~sC 84 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQR------LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGI-----TAQPCGQCRAC 84 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCC------CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccC-----CCCCCcccHHH
Confidence 579999999999999986533 346678999999999999988876311000 0000 00001111111
Q ss_pred HHHHHH-------hcC-CCCCcccHHHHHHHHHH-HhCCCceEEEEEcCCCCCcCChhhHHHhhcCCCCCcEEEEEcc-c
Q 001998 256 KAIIEE-------LEG-SATDLHELNSLLRRIGA-NIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILLTTR-K 325 (984)
Q Consensus 256 ~~i~~~-------l~~-~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr-~ 325 (984)
+.|... +.. +.....++.++.+.+.. -..++.-++|+|++...+...++.|...+..-..+.++|++|. .
T Consensus 85 ~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep 164 (700)
T PRK12323 85 TEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDP 164 (700)
T ss_pred HHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCCh
Confidence 111100 000 00111222222222221 1245666999999977666667777777765445566555554 4
Q ss_pred hHHHhhc-CCCCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHH
Q 001998 326 ETVARMM-ESTDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLPLAAKTI 389 (984)
Q Consensus 326 ~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~ 389 (984)
..+...+ .....+.+..++.++..+.+.+.+...+...+ .+..+.|++.++|.|..+..+
T Consensus 165 ~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d----~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 165 QKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHE----VNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred HhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 4444332 33578999999999999988876543222111 334466999999999755544
No 70
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.31 E-value=1.4e-05 Score=91.59 Aligned_cols=187 Identities=17% Similarity=0.159 Sum_probs=114.1
Q ss_pred CcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCccc-------------------ccCCCe
Q 001998 179 SEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDV-------------------INNFEI 239 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-------------------~~~F~~ 239 (984)
.+++|.+..++.+...+.... -...+.++|+.|+||||+|+.+++...- .+.|..
T Consensus 16 ~diiGq~~~v~~L~~~i~~~r------l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~d 89 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQK------VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFID 89 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCC------CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCc
Confidence 478999999999999886432 3456789999999999999988762110 011222
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHH-HhCCCceEEEEEcCCCCCcCChhhHHHhhcCCCCCcE
Q 001998 240 RVWVCVSDPFDEFSVAKAIIEELEGSATDLHELNSLLRRIGA-NIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSK 318 (984)
Q Consensus 240 ~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ 318 (984)
.+++.......++ +..++...+.. -..+++-++|+|++...+...++.+...+......+.
T Consensus 90 lieidaas~~gvd------------------~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~ 151 (546)
T PRK14957 90 LIEIDAASRTGVE------------------ETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVK 151 (546)
T ss_pred eEEeecccccCHH------------------HHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCce
Confidence 3333222222221 22223332221 1245667999999976555667778777776655666
Q ss_pred EEEEc-cchHHHhh-cCCCCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCCh-HHHHHHHHhh
Q 001998 319 ILLTT-RKETVARM-MESTDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLP-LAAKTIGSLL 393 (984)
Q Consensus 319 iiiTt-r~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlP-Lai~~~~~~l 393 (984)
+|++| ....+... ......+++.+++.++....+.+.+...+...+ .+....|++.++|.+ -|+..+-.++
T Consensus 152 fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~e----~~Al~~Ia~~s~GdlR~alnlLek~i 225 (546)
T PRK14957 152 FILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINSD----EQSLEYIAYHAKGSLRDALSLLDQAI 225 (546)
T ss_pred EEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 66544 43444422 234678999999999988888775533222122 344456899999966 4444444333
No 71
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.28 E-value=3.9e-08 Score=103.15 Aligned_cols=143 Identities=18% Similarity=0.249 Sum_probs=98.0
Q ss_pred CCCCeEEEeecCCCCCCCchhh--cCCCCcEEEEeCcCCCCcCCC---CCCCCCcceeeeccccCceEecceecCccCCC
Q 001998 783 PDLEALEIMHYKGQTAFPSWIV--SLNKLKKLKLSSCCKCEIMPP---LGALPSLEILQIQRMESVKRVGVEFLGIESFN 857 (984)
Q Consensus 783 ~~L~~L~L~~~~~~~~lp~~l~--~l~~L~~L~L~~~~~~~~l~~---l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~~~ 857 (984)
+-+.++++..|...+..--|.- .+..|+.|..++|......+. ..+.++|++|.+.+|..+...+....+
T Consensus 268 ~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~----- 342 (483)
T KOG4341|consen 268 LEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLG----- 342 (483)
T ss_pred hHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhh-----
Confidence 3455555556654442332322 688999999999987654332 346899999999999876655543332
Q ss_pred CCCCCCCccCcccccccccccccCCCCcccccCCCCcccCCcccEEeeecCcCCCCC-----CcCCCCCCCcCeEEeccC
Q 001998 858 DYAPSSSLSLTAFPKLKELTLFHLDGCEEWDFGKEDVIIMPQLCYLDIRFCRKLKSL-----PDQLLQSSTLEKLRIIRA 932 (984)
Q Consensus 858 ~l~~~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l-----p~~~~~l~~L~~L~i~~c 932 (984)
..++.|+.|.+..+....+.++.. .-.++|.|+.|.+++|..+.+. ...-.+...|..+.+.+|
T Consensus 343 ----------rn~~~Le~l~~e~~~~~~d~tL~s-ls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~ 411 (483)
T KOG4341|consen 343 ----------RNCPHLERLDLEECGLITDGTLAS-LSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNC 411 (483)
T ss_pred ----------cCChhhhhhcccccceehhhhHhh-hccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCC
Confidence 368899999998876554443221 1237899999999999876653 333345678999999999
Q ss_pred cchHHhhcc
Q 001998 933 PILRERFKK 941 (984)
Q Consensus 933 ~~l~~~~~~ 941 (984)
|.+.+...+
T Consensus 412 p~i~d~~Le 420 (483)
T KOG4341|consen 412 PLITDATLE 420 (483)
T ss_pred CCchHHHHH
Confidence 998876544
No 72
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.25 E-value=1.4e-05 Score=88.98 Aligned_cols=196 Identities=13% Similarity=0.134 Sum_probs=112.9
Q ss_pred CcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHH
Q 001998 179 SEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAI 258 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 258 (984)
.+++|.+..+..|..++.... -...+.++|..|+||||+|+.+++...- .+.... ..+.....-..+...+
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~r------i~ha~Lf~GP~GtGKTTlAriLAk~Lnc-e~~~~~--~pCg~C~sC~~i~~g~ 88 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGK------IGHAYIFFGPRGVGKTTIARILAKRLNC-ENPIGN--EPCNECTSCLEITKGI 88 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCC------CCeEEEEECCCCCCHHHHHHHHHHhcCc-ccccCc--cccCCCcHHHHHHccC
Confidence 578999999999998886432 2346789999999999999999873211 110000 0000000011111110
Q ss_pred HHHh---cC-CCCCcccHHHHHHHHHHH-hCCCceEEEEEcCCCCCcCChhhHHHhhcCCCCCcEEEEEccc-hHHHhhc
Q 001998 259 IEEL---EG-SATDLHELNSLLRRIGAN-IAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILLTTRK-ETVARMM 332 (984)
Q Consensus 259 ~~~l---~~-~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~-~~v~~~~ 332 (984)
...+ .. ...+..++.++...+... ..++.-++|+|++..-+...++.+...+........+|++|.. ..+...+
T Consensus 89 ~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI 168 (484)
T PRK14956 89 SSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETI 168 (484)
T ss_pred CccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHH
Confidence 0000 00 011112233333333321 2456669999999776666777777777554445555545543 4443332
Q ss_pred -CCCCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCChHHHH
Q 001998 333 -ESTDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLPLAAK 387 (984)
Q Consensus 333 -~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~ 387 (984)
.....|.+.+++.++..+.+.+.+...+...+ .+....|++.++|.+--+.
T Consensus 169 ~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~e----~eAL~~Ia~~S~Gd~RdAL 220 (484)
T PRK14956 169 LSRCQDFIFKKVPLSVLQDYSEKLCKIENVQYD----QEGLFWIAKKGDGSVRDML 220 (484)
T ss_pred HhhhheeeecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCChHHHHH
Confidence 33568999999999999988887644332222 3455679999999885443
No 73
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.24 E-value=4.8e-06 Score=82.18 Aligned_cols=182 Identities=19% Similarity=0.207 Sum_probs=95.0
Q ss_pred CCcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHH
Q 001998 178 VSEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKA 257 (984)
Q Consensus 178 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 257 (984)
-.+|+|.+.-++.+.-++..... .++.+.-+.++|++|+||||||.-+.+ +....|. +.+.. ..+-.
T Consensus 23 L~efiGQ~~l~~~l~i~i~aa~~--r~~~l~h~lf~GPPG~GKTTLA~IIA~--e~~~~~~---~~sg~-~i~k~----- 89 (233)
T PF05496_consen 23 LDEFIGQEHLKGNLKILIRAAKK--RGEALDHMLFYGPPGLGKTTLARIIAN--ELGVNFK---ITSGP-AIEKA----- 89 (233)
T ss_dssp CCCS-S-HHHHHHHHHHHHHHHC--TTS---EEEEESSTTSSHHHHHHHHHH--HCT--EE---EEECC-C--SC-----
T ss_pred HHHccCcHHHHhhhHHHHHHHHh--cCCCcceEEEECCCccchhHHHHHHHh--ccCCCeE---eccch-hhhhH-----
Confidence 35899999988887665542210 023567788999999999999999998 4444542 22211 11101
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHHHhCCCceEEEEEcCCCCCcCChhhHHHhhcCC--------C-----------CCcE
Q 001998 258 IIEELEGSATDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNG--------L-----------RGSK 318 (984)
Q Consensus 258 i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~--------~-----------~gs~ 318 (984)
.++...+.. + +++-+|++|++..-+...-+.+.+++.++ + +-+-
T Consensus 90 ---------------~dl~~il~~-l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTl 152 (233)
T PF05496_consen 90 ---------------GDLAAILTN-L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTL 152 (233)
T ss_dssp ---------------HHHHHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EE
T ss_pred ---------------HHHHHHHHh-c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceE
Confidence 111111111 1 23446777877543332223333333321 1 1223
Q ss_pred EEEEccchHHHhhcCCCC--eEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHHHHhh
Q 001998 319 ILLTTRKETVARMMESTD--IVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLPLAAKTIGSLL 393 (984)
Q Consensus 319 iiiTtr~~~v~~~~~~~~--~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~~l 393 (984)
|=-|||...+...+.... ..+++..+.+|-.++..+.+..-.. +--++.+.+|++++.|-|--+.-+-...
T Consensus 153 igATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i----~i~~~~~~~Ia~rsrGtPRiAnrll~rv 225 (233)
T PF05496_consen 153 IGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNI----EIDEDAAEEIARRSRGTPRIANRLLRRV 225 (233)
T ss_dssp EEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-----EE-HHHHHHHHHCTTTSHHHHHHHHHHH
T ss_pred eeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCC----CcCHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 445888765554443322 4479999999999999887644332 2336778889999999997555444333
No 74
>PLN03025 replication factor C subunit; Provisional
Probab=98.24 E-value=1.6e-05 Score=86.85 Aligned_cols=182 Identities=15% Similarity=0.134 Sum_probs=105.8
Q ss_pred CcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCC-eEEEEEecCCCCHHHHHHH
Q 001998 179 SEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFE-IRVWVCVSDPFDEFSVAKA 257 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~s~~~~~~~~~~~ 257 (984)
.+++|.+..++.|..++... ...-+.++|.+|+||||+|+.+++.. ....|. .++-+..+...... ..++
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~-------~~~~lll~Gp~G~GKTtla~~la~~l-~~~~~~~~~~eln~sd~~~~~-~vr~ 83 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDG-------NMPNLILSGPPGTGKTTSILALAHEL-LGPNYKEAVLELNASDDRGID-VVRN 83 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcC-------CCceEEEECCCCCCHHHHHHHHHHHH-hcccCccceeeecccccccHH-HHHH
Confidence 47889999888888876532 23346789999999999999988731 122232 12222223222222 2222
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHHHhCCCceEEEEEcCCCCCcCChhhHHHhhcCCCCCcEEEEEccch-HHHhhc-CCC
Q 001998 258 IIEELEGSATDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILLTTRKE-TVARMM-EST 335 (984)
Q Consensus 258 i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~-~v~~~~-~~~ 335 (984)
+++.+...... .-.++.-++|+|++..-.......+...+......+++|+++... .+...+ ...
T Consensus 84 ~i~~~~~~~~~-------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc 150 (319)
T PLN03025 84 KIKMFAQKKVT-------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRC 150 (319)
T ss_pred HHHHHHhcccc-------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhh
Confidence 22221110000 002456699999996654444455655554444567777777543 221111 224
Q ss_pred CeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCChHHH
Q 001998 336 DIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLPLAA 386 (984)
Q Consensus 336 ~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai 386 (984)
..+++.+++.++....+...+...+.... .+....|++.++|-.-.+
T Consensus 151 ~~i~f~~l~~~~l~~~L~~i~~~egi~i~----~~~l~~i~~~~~gDlR~a 197 (319)
T PLN03025 151 AIVRFSRLSDQEILGRLMKVVEAEKVPYV----PEGLEAIIFTADGDMRQA 197 (319)
T ss_pred hcccCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 57899999999999998887754333222 344566889998876443
No 75
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.24 E-value=2.4e-05 Score=86.11 Aligned_cols=181 Identities=16% Similarity=0.115 Sum_probs=105.8
Q ss_pred CcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEe--cCCCCHHHHHH
Q 001998 179 SEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCV--SDPFDEFSVAK 256 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~--s~~~~~~~~~~ 256 (984)
.+++|++..++.+..++.... .+.+.++|..|+||||+|+.+.+.. ....+.. .++.+ +...... ..+
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~~-------~~~~ll~G~~G~GKt~~~~~l~~~l-~~~~~~~-~~i~~~~~~~~~~~-~~~ 86 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEKN-------MPHLLFAGPPGTGKTTAALALAREL-YGEDWRE-NFLELNASDERGID-VIR 86 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCCC-------CCeEEEECCCCCCHHHHHHHHHHHH-cCCcccc-ceEEeccccccchH-HHH
Confidence 468999999999999885432 3346999999999999999998742 1112211 12222 2222111 111
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHHHhCCCceEEEEEcCCCCCcCChhhHHHhhcCCCCCcEEEEEccch-HHHhh-cCC
Q 001998 257 AIIEELEGSATDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILLTTRKE-TVARM-MES 334 (984)
Q Consensus 257 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~-~v~~~-~~~ 334 (984)
+.+.++....+ .....+-+||+|++..-.......+...+......+++|+++... .+... ...
T Consensus 87 ~~i~~~~~~~~--------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr 152 (319)
T PRK00440 87 NKIKEFARTAP--------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSR 152 (319)
T ss_pred HHHHHHHhcCC--------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHH
Confidence 11111111000 001235589999985543334455666666555567788777542 11111 122
Q ss_pred CCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCChHHHH
Q 001998 335 TDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLPLAAK 387 (984)
Q Consensus 335 ~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~ 387 (984)
...+++.+++.++....+...+...+.... .+....+++.++|.+--+.
T Consensus 153 ~~~~~~~~l~~~ei~~~l~~~~~~~~~~i~----~~al~~l~~~~~gd~r~~~ 201 (319)
T PRK00440 153 CAVFRFSPLKKEAVAERLRYIAENEGIEIT----DDALEAIYYVSEGDMRKAI 201 (319)
T ss_pred hheeeeCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHH
Confidence 347899999999998888887654332222 3455668899999876543
No 76
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.24 E-value=2.4e-05 Score=88.34 Aligned_cols=181 Identities=17% Similarity=0.136 Sum_probs=113.0
Q ss_pred CcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCc------c------------c-ccCCCe
Q 001998 179 SEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDN------D------------V-INNFEI 239 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~------~------------~-~~~F~~ 239 (984)
.+++|.+..++.+.+.+..+. -...+.++|..|+||||+|+.+.+.- . + .+.+.-
T Consensus 13 ~dliGQe~vv~~L~~a~~~~r------i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~D 86 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNK------IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPD 86 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCC------CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCC
Confidence 578999999998888875432 34578899999999999998886510 0 0 011122
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCceEEEEEcCCCCCcCChhhHHHhhcCCCCCcEE
Q 001998 240 RVWVCVSDPFDEFSVAKAIIEELEGSATDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKI 319 (984)
Q Consensus 240 ~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~i 319 (984)
++.+..+....+++ .++|++..... -..+++=++|+|++..-+....+.+...+......+++
T Consensus 87 v~eidaas~~~vdd-IR~Iie~~~~~----------------P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~f 149 (491)
T PRK14964 87 VIEIDAASNTSVDD-IKVILENSCYL----------------PISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKF 149 (491)
T ss_pred EEEEecccCCCHHH-HHHHHHHHHhc----------------cccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEE
Confidence 33444433333322 22222222110 12345668999999665545566777777766667777
Q ss_pred EEEccc-hHHHhhc-CCCCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCChHHH
Q 001998 320 LLTTRK-ETVARMM-ESTDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLPLAA 386 (984)
Q Consensus 320 iiTtr~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai 386 (984)
|++|.+ +.+...+ .....+.+.+++.++..+.+.+.+...+...+ .+....|++.++|.+-.+
T Consensus 150 Ilatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~----~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 150 ILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHD----EESLKLIAENSSGSMRNA 214 (491)
T ss_pred EEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 766643 4444433 33578899999999999999887754433222 344556999999877544
No 77
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.24 E-value=1.8e-05 Score=92.09 Aligned_cols=195 Identities=16% Similarity=0.226 Sum_probs=115.8
Q ss_pred CcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHH
Q 001998 179 SEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAI 258 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 258 (984)
.++||.+..++.|...+..+. -...+.++|..|+||||+|+.+.+...-...+ ....+......+.|
T Consensus 16 ~divGQe~vv~~L~~~l~~~r------l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~-------~~~pCg~C~~C~~i 82 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGR------LHHAYLFSGTRGVGKTTIARLLAKGLNCETGI-------TATPCGECDNCREI 82 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCC------CCeEEEEECCCCCCHHHHHHHHHHhhhhccCC-------CCCCCCCCHHHHHH
Confidence 579999999999998886432 34567899999999999999887631111000 00111111222222
Q ss_pred HHH-------hcCC-CCCcccHHHHHHHHHH-HhCCCceEEEEEcCCCCCcCChhhHHHhhcCCCCCcEEEEEccc-hHH
Q 001998 259 IEE-------LEGS-ATDLHELNSLLRRIGA-NIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILLTTRK-ETV 328 (984)
Q Consensus 259 ~~~-------l~~~-~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~-~~v 328 (984)
... +... .....++.++...+.. -..+++-++|+|++...+....+.+...+-......++|++|.+ ..+
T Consensus 83 ~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kL 162 (647)
T PRK07994 83 EQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 162 (647)
T ss_pred HcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCcccc
Confidence 110 0000 0111223333333222 13466779999999776666677777777665556666665555 334
Q ss_pred Hhh-cCCCCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHHH
Q 001998 329 ARM-MESTDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLPLAAKTIG 390 (984)
Q Consensus 329 ~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~ 390 (984)
... ......+.+.+++.++....+.+..-..+...+ .+....|++.++|.+--+..+.
T Consensus 163 l~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~e----~~aL~~Ia~~s~Gs~R~Al~ll 221 (647)
T PRK07994 163 PVTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPFE----PRALQLLARAADGSMRDALSLT 221 (647)
T ss_pred chHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 322 233678999999999999998876533222122 3444569999999886554443
No 78
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.23 E-value=1.6e-05 Score=92.12 Aligned_cols=183 Identities=13% Similarity=0.151 Sum_probs=110.0
Q ss_pred CcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccc-------------------cCCCe
Q 001998 179 SEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVI-------------------NNFEI 239 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~~ 239 (984)
.+++|.+..++.|..++.... -...+.++|..|+||||+|+.+.+...-. +.|-.
T Consensus 16 ddIIGQe~vv~~L~~ai~~~r------l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~D 89 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGR------LHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVD 89 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCC------CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccc
Confidence 579999999999999987432 34678899999999999999887631100 01111
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHH-HhCCCceEEEEEcCCCCCcCChhhHHHhhcCCCCCcE
Q 001998 240 RVWVCVSDPFDEFSVAKAIIEELEGSATDLHELNSLLRRIGA-NIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSK 318 (984)
Q Consensus 240 ~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ 318 (984)
.+.+..+....+ .++.++....+. -..+++-++|+|++...+......+...+.......+
T Consensus 90 vlEidaAs~~gV------------------d~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~ 151 (709)
T PRK08691 90 LLEIDAASNTGI------------------DNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVK 151 (709)
T ss_pred eEEEeccccCCH------------------HHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcE
Confidence 122222211111 112222222111 1235666899999965444445556666655445667
Q ss_pred EEEEccch-HHHhh-cCCCCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHH
Q 001998 319 ILLTTRKE-TVARM-MESTDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLPLAAKTI 389 (984)
Q Consensus 319 iiiTtr~~-~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~ 389 (984)
+|++|.+. .+... .+....+.+.+++.++....+.+.+-..+...+ .+....|++.++|.+--+..+
T Consensus 152 fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id----~eAL~~Ia~~A~GslRdAlnL 220 (709)
T PRK08691 152 FILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYE----PPALQLLGRAAAGSMRDALSL 220 (709)
T ss_pred EEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcC----HHHHHHHHHHhCCCHHHHHHH
Confidence 77776543 22221 233457888999999999998877654433222 345566999999988554433
No 79
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.23 E-value=4.7e-07 Score=93.23 Aligned_cols=236 Identities=18% Similarity=0.145 Sum_probs=140.6
Q ss_pred ccCCCceeEEeccCCCcch--hhhHHhhhccccccee-cCCCCcc----ccCc-------ccccccCccceEEecCCCcc
Q 001998 562 IFNAKKLRSLLIHSPLEVL--SPVLKGLFDHLTYGED-DGGENTV----HDIP-------REIEKLIHLRSLRLAGLKIE 627 (984)
Q Consensus 562 ~~~~~~Lr~L~l~~~~~~~--~~~~~~~~~~l~~Lrv-~l~~~~i----~~lp-------~~i~~L~~Lr~L~L~~~~i~ 627 (984)
...+..+..+++++|.... ...+...+.+.+.|+. +++.... .++| +.+-.+++|++|+||.|-+.
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 4456677888888876321 1223444666777777 7665432 2344 34556778999999998765
Q ss_pred -----ccchhhccCCcccEEeccccccccccc--------------ccccCCCCCCeEEeccCCCcccCCc-----cCCC
Q 001998 628 -----ELPETCCKLFNLQTLDINECYRLKRLP--------------QGVGSLVNLRHLVVSLNGDLDYLPK-----GVER 683 (984)
Q Consensus 628 -----~lp~~i~~L~~L~~L~L~~~~~l~~lP--------------~~i~~L~~L~~L~l~~~~~l~~~p~-----~i~~ 683 (984)
.+-.-+.+++.|++|.|.+|. +...- ..+..-++||.+....| .+...+. .+..
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN-rlen~ga~~~A~~~~~ 183 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN-RLENGGATALAEAFQS 183 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc-ccccccHHHHHHHHHh
Confidence 233456678888888888886 43211 11233445666655544 2222221 1222
Q ss_pred CCCCCcCCceEecCCCCcccccccccccccccccCCCeeEEcCCCCCCChhhhhHhcccCCCCCCeEEEEEcCCcccccC
Q 001998 684 LTSLRTLREFVVSSTGGKYCTKACKVEGLRQLNHLRGTLRIRGLGNVTDVEEAEKADLEKKKNIVGLELRFDKEEAATEG 763 (984)
Q Consensus 684 l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~ 763 (984)
.+.|+.+.+..+.... +.. .+....+..|++|+.|+|..|.++..
T Consensus 184 ~~~leevr~~qN~I~~-------------------------------eG~-~al~eal~~~~~LevLdl~DNtft~e--- 228 (382)
T KOG1909|consen 184 HPTLEEVRLSQNGIRP-------------------------------EGV-TALAEALEHCPHLEVLDLRDNTFTLE--- 228 (382)
T ss_pred ccccceEEEecccccC-------------------------------chh-HHHHHHHHhCCcceeeecccchhhhH---
Confidence 2233333222211110 111 34556678899999999998876432
Q ss_pred cCchhhccHHHHhhcCCCCCCCCeEEEeecCCCCCCCchhh-----cCCCCcEEEEeCcCCCCc----C-CCCCCCCCcc
Q 001998 764 INEENEINHQAISEALRPPPDLEALEIMHYKGQTAFPSWIV-----SLNKLKKLKLSSCCKCEI----M-PPLGALPSLE 833 (984)
Q Consensus 764 ~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~lp~~l~-----~l~~L~~L~L~~~~~~~~----l-~~l~~Lp~L~ 833 (984)
....+...++..++|++|++++|.....--..+. ..|+|+.|.+.+|..... + -.....|.|+
T Consensus 229 -------gs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~ 301 (382)
T KOG1909|consen 229 -------GSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLE 301 (382)
T ss_pred -------HHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhH
Confidence 2234556677778999999999987652222221 578999999999865431 1 1255689999
Q ss_pred eeeecccc
Q 001998 834 ILQIQRME 841 (984)
Q Consensus 834 ~L~L~~~~ 841 (984)
.|+|++|.
T Consensus 302 kLnLngN~ 309 (382)
T KOG1909|consen 302 KLNLNGNR 309 (382)
T ss_pred HhcCCccc
Confidence 99999987
No 80
>PRK08727 hypothetical protein; Validated
Probab=98.23 E-value=3.3e-05 Score=80.01 Aligned_cols=148 Identities=16% Similarity=0.097 Sum_probs=89.6
Q ss_pred EEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCc
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAIIEELEGSATDLHELNSLLRRIGANIAGQK 287 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 287 (984)
..+.|+|..|+|||.|++.+++. ...+...++|+++.+ ....+. ...+.+ .+.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~--~~~~~~~~~y~~~~~------~~~~~~--------------~~~~~l-----~~~ 94 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAA--AEQAGRSSAYLPLQA------AAGRLR--------------DALEAL-----EGR 94 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEeHHH------hhhhHH--------------HHHHHH-----hcC
Confidence 35999999999999999999873 333334566775322 111111 111111 233
Q ss_pred eEEEEEcCCCCC-cCChhh-HHHhhcC-CCCCcEEEEEccch---------HHHhhcCCCCeEeCCCCChHhHHHHHHHH
Q 001998 288 FFMVLDNLWTDD-YRKWEP-FRNCLMN-GLRGSKILLTTRKE---------TVARMMESTDIVYVQGLSEPECWSLFRRF 355 (984)
Q Consensus 288 ~LlVlDdvw~~~-~~~~~~-l~~~l~~-~~~gs~iiiTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~~ 355 (984)
-+||+||+.... ...|.. +...+.. ...|..||+|++.. .+.+.+.....+++++++.++-.+++.++
T Consensus 95 dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~ 174 (233)
T PRK08727 95 SLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRER 174 (233)
T ss_pred CEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHH
Confidence 589999995422 123443 3322222 13466799999852 23334444668999999999999999987
Q ss_pred hcCCCCCCCchhHHHHHHHHHHhcCCChHHH
Q 001998 356 AFSGRTPLECDQLEEIGRGIVRKCKGLPLAA 386 (984)
Q Consensus 356 ~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai 386 (984)
+...+-..+ ++...-|++.++|-.-++
T Consensus 175 a~~~~l~l~----~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 175 AQRRGLALD----EAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHcCCCCC----HHHHHHHHHhCCCCHHHH
Confidence 754322122 445556888887666544
No 81
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.21 E-value=2.7e-05 Score=88.42 Aligned_cols=187 Identities=16% Similarity=0.190 Sum_probs=108.4
Q ss_pred CcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccC-------------------CCe
Q 001998 179 SEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINN-------------------FEI 239 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------F~~ 239 (984)
.+++|.+...+.+...+..+. -...+.++|++|+||||+|+.+.+...-... +..
T Consensus 14 ~divGq~~i~~~L~~~i~~~~------l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~d 87 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNS------ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMD 87 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCC------CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCc
Confidence 579999988888888775432 2456789999999999999998763211000 001
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHH-HhCCCceEEEEEcCCCCCcCChhhHHHhhcCCCCCcE
Q 001998 240 RVWVCVSDPFDEFSVAKAIIEELEGSATDLHELNSLLRRIGA-NIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSK 318 (984)
Q Consensus 240 ~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ 318 (984)
.+.+..+....... +..+.+.... ...+++-++|+|++..-.....+.+...+........
T Consensus 88 v~el~aa~~~gid~------------------iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv 149 (472)
T PRK14962 88 VIELDAASNRGIDE------------------IRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVV 149 (472)
T ss_pred cEEEeCcccCCHHH------------------HHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEE
Confidence 22222222222211 1111111111 1235667999999954333344556666655444455
Q ss_pred EEEEccc-hHHHhhc-CCCCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcC-CChHHHHHHHHhh
Q 001998 319 ILLTTRK-ETVARMM-ESTDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCK-GLPLAAKTIGSLL 393 (984)
Q Consensus 319 iiiTtr~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~-GlPLai~~~~~~l 393 (984)
+|++|.+ ..+...+ .....+.+.+++.++....+.+.+...+.... .+....|++.++ +++.|+..+-.+.
T Consensus 150 ~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~----~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 150 FVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEID----REALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred EEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 5544443 3443333 33568899999999999988887644332222 344556888775 5567777766544
No 82
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.21 E-value=2.7e-06 Score=91.29 Aligned_cols=87 Identities=20% Similarity=0.162 Sum_probs=60.2
Q ss_pred EEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCC--CHHHHHHHHHHHhcCCCCCcccHH------HHHHHH
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPF--DEFSVAKAIIEELEGSATDLHELN------SLLRRI 279 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~~~~~~~~------~~~~~l 279 (984)
....|+|.+|+||||||++||++.... +|+..+||.+++++ ++.++++.|...+-....+..... .....-
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~A 248 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKA 248 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHH
Confidence 457899999999999999999974443 89999999999988 788888888643322221111111 111111
Q ss_pred HHH-hCCCceEEEEEcC
Q 001998 280 GAN-IAGQKFFMVLDNL 295 (984)
Q Consensus 280 ~~~-l~~kr~LlVlDdv 295 (984)
... -.+++++|++|++
T Consensus 249 e~~~e~G~dVlL~iDsI 265 (416)
T PRK09376 249 KRLVEHGKDVVILLDSI 265 (416)
T ss_pred HHHHHcCCCEEEEEECh
Confidence 111 3689999999999
No 83
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.20 E-value=1.9e-06 Score=91.67 Aligned_cols=244 Identities=23% Similarity=0.209 Sum_probs=161.2
Q ss_pred ceEEEEEEecCcchHHHHHHHHhcCcccccCCC-eEEEEEecCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhC
Q 001998 206 TVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFE-IRVWVCVSDPFDEFSVAKAIIEELEGSATDLHELNSLLRRIGANIA 284 (984)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 284 (984)
..+.+.++|.|||||||++-.+.. +...|. .+.+|....--|...+.-.+...+...... -+.....+.....
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~---g~~~~~~~~~~~~ 86 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQP---GDSAVDTLVRRIG 86 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhccccccc---chHHHHHHHHHHh
Confidence 578899999999999999998887 556674 566676666667777776666666554322 1223344556667
Q ss_pred CCceEEEEEcCCCCCcCChhhHHHhhcCCCCCcEEEEEccchHHHhhcCCCCeEeCCCCChH-hHHHHHHHHhcCCCCC-
Q 001998 285 GQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILLTTRKETVARMMESTDIVYVQGLSEP-ECWSLFRRFAFSGRTP- 362 (984)
Q Consensus 285 ~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~v~~~~~~~~~~~l~~L~~~-~~~~lf~~~~~~~~~~- 362 (984)
++|.++|+||..+- .+.-..+...+-.+...-.|+.|+|.... ........+.+|+.. ++.++|...+......
T Consensus 87 ~rr~llvldncehl-~~~~a~~i~all~~~~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f 162 (414)
T COG3903 87 DRRALLVLDNCEHL-LDACAALIVALLGACPRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLVALSF 162 (414)
T ss_pred hhhHHHHhcCcHHH-HHHHHHHHHHHHccchhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHhccce
Confidence 89999999998431 12223344445555566678889986543 233556677777765 7889988776433321
Q ss_pred CCchhHHHHHHHHHHhcCCChHHHHHHHHhhccCCCHHHHHHHHhhhhhhhhh-------hcccccchhhccccCCChhh
Q 001998 363 LECDQLEEIGRGIVRKCKGLPLAAKTIGSLLQFKRTKEEWQSVLDSEMWQLEE-------FERGLSAPLFLSYNDLPFEI 435 (984)
Q Consensus 363 ~~~~~l~~~~~~i~~~~~GlPLai~~~~~~l~~~~~~~~w~~~l~~~~~~~~~-------~~~~~~~~l~~sy~~L~~~~ 435 (984)
.-...-.....+|.++..|.|++|...++..+.- ...+-..-++.....+.+ -....++.+.+||.-|....
T Consensus 163 ~l~~~~~a~v~~icr~ldg~~laielaaarv~sl-~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe 241 (414)
T COG3903 163 WLTDDNAAAVAEICRRLDGIPLAIELAAARVRSL-SPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWE 241 (414)
T ss_pred eecCCchHHHHHHHHHhhcchHHHHHHHHHHHhc-CHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHH
Confidence 1112335667789999999999999999888543 233333333322211111 23568999999999999988
Q ss_pred hhhhhhcccCCCCCccChHHHHHHHHHcC
Q 001998 436 KRCFSYCAIFPKGSSLKKDELVKLWMAQG 464 (984)
Q Consensus 436 k~cfl~~~~fp~~~~i~~~~li~~Wiaeg 464 (984)
+--|--++.|...+... ...|.+-|
T Consensus 242 ~~~~~rLa~~~g~f~~~----l~~~~a~g 266 (414)
T COG3903 242 RALFGRLAVFVGGFDLG----LALAVAAG 266 (414)
T ss_pred HHHhcchhhhhhhhccc----HHHHHhcC
Confidence 99999999998877443 34455544
No 84
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.20 E-value=2.9e-05 Score=90.33 Aligned_cols=197 Identities=15% Similarity=0.170 Sum_probs=111.2
Q ss_pred CcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCC--CeEEEEEecCCCCHHHHHH
Q 001998 179 SEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNF--EIRVWVCVSDPFDEFSVAK 256 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~~s~~~~~~~~~~ 256 (984)
.+++|-+..++.|.+++.... -...+.++|..|+||||+|+.+.+..--.... ... ....++.....+
T Consensus 16 ~dviGQe~vv~~L~~~l~~~r------l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~----~~~pCg~C~~C~ 85 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQR------LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGI----TATPCGVCQACR 85 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCC------CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCC----CCCCCCccHHHH
Confidence 578999999999999886533 34677899999999999999885421000000 000 001111111222
Q ss_pred HHHHHh-----cCCCCCcccHHHHHHHHHH----HhCCCceEEEEEcCCCCCcCChhhHHHhhcCCCCCcEEEEEccc-h
Q 001998 257 AIIEEL-----EGSATDLHELNSLLRRIGA----NIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILLTTRK-E 326 (984)
Q Consensus 257 ~i~~~l-----~~~~~~~~~~~~~~~~l~~----~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~-~ 326 (984)
.|...- .........++++.+.+.. -..++.-++|+|++...+...++.+...+.......++|++|.+ .
T Consensus 86 ~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~ 165 (618)
T PRK14951 86 DIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQ 165 (618)
T ss_pred HHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCch
Confidence 221000 0000001112222211111 11244558999999876666677777777665556666655543 4
Q ss_pred HHHhh-cCCCCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHH
Q 001998 327 TVARM-MESTDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLPLAAKTI 389 (984)
Q Consensus 327 ~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~ 389 (984)
.+... ......+++++++.++..+.+.+.+...+...+ .+....|++.++|.+--+..+
T Consensus 166 kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie----~~AL~~La~~s~GslR~al~l 225 (618)
T PRK14951 166 KVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAE----PQALRLLARAARGSMRDALSL 225 (618)
T ss_pred hhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 44322 234678999999999999988877644332222 344566888999877555443
No 85
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.20 E-value=2.6e-05 Score=89.56 Aligned_cols=183 Identities=15% Similarity=0.126 Sum_probs=111.2
Q ss_pred CcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccc-------------------cCCCe
Q 001998 179 SEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVI-------------------NNFEI 239 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~~ 239 (984)
.++||-+..++.|.+++.... -...+.++|..|+||||+|+.+.+.---. +.|.-
T Consensus 16 ~divGq~~v~~~L~~~~~~~~------l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d 89 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQY------LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPD 89 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCC------CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCce
Confidence 579999999999999996533 34567899999999999998887631100 11222
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCceEEEEEcCCCCCcCChhhHHHhhcCCCCCcEE
Q 001998 240 RVWVCVSDPFDEFSVAKAIIEELEGSATDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKI 319 (984)
Q Consensus 240 ~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~i 319 (984)
++.+..+....++++ +++++.+.. .-..++.-++|+|++..-+....+.+...+......+++
T Consensus 90 ~~eidaas~~~v~~i-R~l~~~~~~----------------~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~f 152 (509)
T PRK14958 90 LFEVDAASRTKVEDT-RELLDNIPY----------------APTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKF 152 (509)
T ss_pred EEEEcccccCCHHHH-HHHHHHHhh----------------ccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEE
Confidence 333332222222221 222222111 112355668999999766556677777777666566777
Q ss_pred EEEccc-hHHHhh-cCCCCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCChHHHHH
Q 001998 320 LLTTRK-ETVARM-MESTDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLPLAAKT 388 (984)
Q Consensus 320 iiTtr~-~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~ 388 (984)
|++|.+ ..+... ......+++.+++.++....+.+.+-..+...+ .+....|++.++|.+--+..
T Consensus 153 Ilattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~----~~al~~ia~~s~GslR~al~ 219 (509)
T PRK14958 153 ILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFE----NAALDLLARAANGSVRDALS 219 (509)
T ss_pred EEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCcHHHHHH
Confidence 766544 333322 233567889999999988777666543332222 23345688899998754443
No 86
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.18 E-value=4e-05 Score=83.78 Aligned_cols=196 Identities=16% Similarity=0.165 Sum_probs=115.7
Q ss_pred cCCcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccC----CCeEEEEEecCCCCHH
Q 001998 177 DVSEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINN----FEIRVWVCVSDPFDEF 252 (984)
Q Consensus 177 ~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~s~~~~~~ 252 (984)
.-..++|.+...+.+...+.... -...+.|+|..|+||||+|+.+.+. +-.+ +... .........
T Consensus 21 ~~~~l~Gh~~a~~~L~~a~~~gr------l~ha~L~~G~~G~GKttlA~~lA~~--Llc~~~~~~~~~---~~~~~~~~c 89 (351)
T PRK09112 21 ENTRLFGHEEAEAFLAQAYREGK------LHHALLFEGPEGIGKATLAFHLANH--ILSHPDPAEAPE---TLADPDPAS 89 (351)
T ss_pred chhhccCcHHHHHHHHHHHHcCC------CCeeEeeECCCCCCHHHHHHHHHHH--HcCCCccccCcc---ccCCCCCCC
Confidence 34579999999999999986533 3557889999999999999887763 2110 1111 001111112
Q ss_pred HHHHHHHHH-------hcCC--C-----CCcccHHHHHHHHHHHh-----CCCceEEEEEcCCCCCcCChhhHHHhhcCC
Q 001998 253 SVAKAIIEE-------LEGS--A-----TDLHELNSLLRRIGANI-----AGQKFFMVLDNLWTDDYRKWEPFRNCLMNG 313 (984)
Q Consensus 253 ~~~~~i~~~-------l~~~--~-----~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~ 313 (984)
...+.|... +... . ...-.++++ +.+.+++ .+++-++|+|++...+....+.+...+...
T Consensus 90 ~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~i-R~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEp 168 (351)
T PRK09112 90 PVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEI-RRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEP 168 (351)
T ss_pred HHHHHHHcCCCCCEEEeecccccccccccccCCHHHH-HHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcC
Confidence 233333221 1000 0 011112332 2333333 356679999999776666667777777664
Q ss_pred CCCcEEEEEc-cchHHHhhc-CCCCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHHH
Q 001998 314 LRGSKILLTT-RKETVARMM-ESTDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLPLAAKTIG 390 (984)
Q Consensus 314 ~~gs~iiiTt-r~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~ 390 (984)
.....+|++| +...+...+ .....+++.+++.++..+++.+.+.... .-.+....|++.++|.|..+..+.
T Consensus 169 p~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~------~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 169 PARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG------SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred CCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC------CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4455555544 433333222 2356999999999999999987432111 113345679999999998765443
No 87
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.18 E-value=6.2e-05 Score=84.21 Aligned_cols=184 Identities=13% Similarity=0.169 Sum_probs=110.6
Q ss_pred CCcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcc--c------------------ccCC
Q 001998 178 VSEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDND--V------------------INNF 237 (984)
Q Consensus 178 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~--~------------------~~~F 237 (984)
-.+++|.+..++.+..++.... -...+.++|..|+||||+|+.+.+... . ..++
T Consensus 13 ~~~iig~~~~~~~l~~~~~~~~------~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~ 86 (355)
T TIGR02397 13 FEDVIGQEHIVQTLKNAIKNGR------IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSL 86 (355)
T ss_pred HhhccCcHHHHHHHHHHHHcCC------CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 3478999999999999886432 345788999999999999988765311 0 0122
Q ss_pred CeEEEEEecCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHH-HhCCCceEEEEEcCCCCCcCChhhHHHhhcCCCCC
Q 001998 238 EIRVWVCVSDPFDEFSVAKAIIEELEGSATDLHELNSLLRRIGA-NIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRG 316 (984)
Q Consensus 238 ~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~g 316 (984)
+. +++........ .+..++...+.. -..+++-++|+|++..-.......+...+......
T Consensus 87 ~~-~~~~~~~~~~~------------------~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~ 147 (355)
T TIGR02397 87 DV-IEIDAASNNGV------------------DDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEH 147 (355)
T ss_pred CE-EEeeccccCCH------------------HHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccc
Confidence 22 22222111111 112222222221 12345558999998554334456676667555556
Q ss_pred cEEEEEccchH-HHhhc-CCCCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHHH
Q 001998 317 SKILLTTRKET-VARMM-ESTDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLPLAAKTIG 390 (984)
Q Consensus 317 s~iiiTtr~~~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~ 390 (984)
+.+|++|.+.. +...+ .....+++.+++.++..+++...+-..+.... .+.+..+++.++|.|..+....
T Consensus 148 ~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~----~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 148 VVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIE----DEALELIARAADGSLRDALSLL 219 (355)
T ss_pred eeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCChHHHHHHH
Confidence 67777765543 33222 23457889999999998888877643332121 3566678999999886654443
No 88
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.17 E-value=1.1e-05 Score=95.91 Aligned_cols=169 Identities=18% Similarity=0.264 Sum_probs=94.8
Q ss_pred CcccccHHHHH---HHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHH
Q 001998 179 SEVRGRDEEMR---TLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVA 255 (984)
Q Consensus 179 ~~~~Gr~~~~~---~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 255 (984)
++++|.+..+. .+...+.. .....+.++|++|+||||||+.+++. ...+|. .++.+. ...
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~-------~~~~slLL~GPpGtGKTTLA~aIA~~--~~~~f~---~lna~~-~~i---- 90 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKA-------DRVGSLILYGPPGVGKTTLARIIANH--TRAHFS---SLNAVL-AGV---- 90 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhc-------CCCceEEEECCCCCCHHHHHHHHHHH--hcCcce---eehhhh-hhh----
Confidence 46889888774 45455532 23455789999999999999999983 444441 111110 000
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHHHh--CCCceEEEEEcCCCCCcCChhhHHHhhcCCCCCcEEEEE--ccch--HHH
Q 001998 256 KAIIEELEGSATDLHELNSLLRRIGANI--AGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILLT--TRKE--TVA 329 (984)
Q Consensus 256 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiT--tr~~--~v~ 329 (984)
.+..+......+.+ .+++.+|||||++.-+...++.+...+. .|+.++|+ |.+. .+.
T Consensus 91 --------------~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~ 153 (725)
T PRK13341 91 --------------KDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVN 153 (725)
T ss_pred --------------HHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhh
Confidence 11111222222212 2567799999997644444555554433 35555553 4442 122
Q ss_pred hh-cCCCCeEeCCCCChHhHHHHHHHHhcC------CCCCCCchhHHHHHHHHHHhcCCChH
Q 001998 330 RM-MESTDIVYVQGLSEPECWSLFRRFAFS------GRTPLECDQLEEIGRGIVRKCKGLPL 384 (984)
Q Consensus 330 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~------~~~~~~~~~l~~~~~~i~~~~~GlPL 384 (984)
.. ......+.+++++.++...++.+..-. ..... --.+....|++.+.|..-
T Consensus 154 ~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~---I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 154 KALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVD---LEPEAEKHLVDVANGDAR 212 (725)
T ss_pred hHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccC---CCHHHHHHHHHhCCCCHH
Confidence 22 123467899999999999998876531 11111 113445567778877543
No 89
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.16 E-value=2.5e-06 Score=67.46 Aligned_cols=57 Identities=39% Similarity=0.522 Sum_probs=47.2
Q ss_pred CccceEEecCCCccccch-hhccCCcccEEecccccccccccc-cccCCCCCCeEEeccC
Q 001998 614 IHLRSLRLAGLKIEELPE-TCCKLFNLQTLDINECYRLKRLPQ-GVGSLVNLRHLVVSLN 671 (984)
Q Consensus 614 ~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lP~-~i~~L~~L~~L~l~~~ 671 (984)
++|++|++++|.++.+|. .+.++++|++|++++|. ++.+|. .+.++++|++|++++|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCC
Confidence 478889999998888885 67888999999999887 777664 5688999999998887
No 90
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.15 E-value=4.6e-05 Score=87.41 Aligned_cols=197 Identities=14% Similarity=0.177 Sum_probs=111.6
Q ss_pred CCcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHH
Q 001998 178 VSEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKA 257 (984)
Q Consensus 178 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 257 (984)
-.+++|++..++.+...+..+. -.+.+.++|+.|+||||+|+.+.+... |.-|... ..+......+.
T Consensus 15 F~dIIGQe~iv~~L~~aI~~~r------l~hA~Lf~GP~GvGKTTlA~~lAk~L~------C~~~~~~-~~Cg~C~sCr~ 81 (605)
T PRK05896 15 FKQIIGQELIKKILVNAILNNK------LTHAYIFSGPRGIGKTSIAKIFAKAIN------CLNPKDG-DCCNSCSVCES 81 (605)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC------CCceEEEECCCCCCHHHHHHHHHHHhc------CCCCCCC-CCCcccHHHHH
Confidence 3578999999999999886432 345688999999999999998876311 0001110 11111112222
Q ss_pred HHHHh-------cCC-CCCcccHHHHHHHHHHH-hCCCceEEEEEcCCCCCcCChhhHHHhhcCCCCCcEEEEEccc-hH
Q 001998 258 IIEEL-------EGS-ATDLHELNSLLRRIGAN-IAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILLTTRK-ET 327 (984)
Q Consensus 258 i~~~l-------~~~-~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~-~~ 327 (984)
+.... ... .....++..+...+... ..+++=++|+|++..-+...+..+...+........+|++|.. ..
T Consensus 82 i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~K 161 (605)
T PRK05896 82 INTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQK 161 (605)
T ss_pred HHcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHh
Confidence 21110 000 01111122222222211 1233446999999765555677777777665556666655543 33
Q ss_pred HHhh-cCCCCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCChH-HHHHHHH
Q 001998 328 VARM-MESTDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLPL-AAKTIGS 391 (984)
Q Consensus 328 v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlPL-ai~~~~~ 391 (984)
+... ......+++.+++.++....+...+...+.... .+.+..+++.++|.+- |+..+-.
T Consensus 162 Ll~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is----~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 162 IPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIE----DNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred hhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCcHHHHHHHHHH
Confidence 4322 233568899999999999888876643322122 3445668999999664 4444433
No 91
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.13 E-value=9.3e-05 Score=81.38 Aligned_cols=197 Identities=13% Similarity=0.053 Sum_probs=113.7
Q ss_pred CCcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccC-CCeEEE---EEecCCCCHHH
Q 001998 178 VSEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINN-FEIRVW---VCVSDPFDEFS 253 (984)
Q Consensus 178 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~~~w---v~~s~~~~~~~ 253 (984)
-.+++|.+..++.+.+.+..+. -...+.++|+.|+||+|+|..+.+.. .... ...... ...........
T Consensus 18 ~~~iiGq~~~~~~L~~~~~~~r------l~HA~Lf~Gp~G~GK~~lA~~~A~~L-lc~~~~~~~~~~~~~~~l~~~~~c~ 90 (365)
T PRK07471 18 TTALFGHAAAEAALLDAYRSGR------LHHAWLIGGPQGIGKATLAYRMARFL-LATPPPGGDGAVPPPTSLAIDPDHP 90 (365)
T ss_pred hhhccChHHHHHHHHHHHHcCC------CCceEEEECCCCCCHHHHHHHHHHHH-hCCCCCCCCccccccccccCCCCCh
Confidence 3579999999999999887543 35578899999999999997666521 0000 000000 00000000001
Q ss_pred HHHHHHHHh-------c----CCC---CCcccHHHHHHHHHHHh-----CCCceEEEEEcCCCCCcCChhhHHHhhcCCC
Q 001998 254 VAKAIIEEL-------E----GSA---TDLHELNSLLRRIGANI-----AGQKFFMVLDNLWTDDYRKWEPFRNCLMNGL 314 (984)
Q Consensus 254 ~~~~i~~~l-------~----~~~---~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~ 314 (984)
..+.|...- . ... ...-.+++ ++.+.+.+ .+++-++|+|++...+......+...+....
T Consensus 91 ~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp 169 (365)
T PRK07471 91 VARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPP 169 (365)
T ss_pred HHHHHHccCCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCC
Confidence 111111000 0 000 01112333 22333333 2556799999998777667777777777655
Q ss_pred CCcEEEEEccchH-HHhhc-CCCCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHHH
Q 001998 315 RGSKILLTTRKET-VARMM-ESTDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLPLAAKTIG 390 (984)
Q Consensus 315 ~gs~iiiTtr~~~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~ 390 (984)
.++.+|++|.+.+ +...+ .....+.+.+++.++..+++...... .. .+....++..++|.|..+..+.
T Consensus 170 ~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~----~~----~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 170 ARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD----LP----DDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred CCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc----CC----HHHHHHHHHHcCCCHHHHHHHh
Confidence 6677777777653 33222 33678999999999999999875411 11 1112568999999998765553
No 92
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=1.2e-07 Score=94.81 Aligned_cols=58 Identities=19% Similarity=0.187 Sum_probs=36.4
Q ss_pred CCCCeEEEeecCCCCCCCchh----hcCCCCcEEEEeCcCCCCc--CCCCCCCCCcceeeecccc
Q 001998 783 PDLEALEIMHYKGQTAFPSWI----VSLNKLKKLKLSSCCKCEI--MPPLGALPSLEILQIQRME 841 (984)
Q Consensus 783 ~~L~~L~L~~~~~~~~lp~~l----~~l~~L~~L~L~~~~~~~~--l~~l~~Lp~L~~L~L~~~~ 841 (984)
++|..|+|+||.-.- ..+.+ ..+++|.+|+|++|..+.. +..+-+++.|++|.+++|.
T Consensus 286 e~l~~LNlsG~rrnl-~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY 349 (419)
T KOG2120|consen 286 ETLTQLNLSGYRRNL-QKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY 349 (419)
T ss_pred hhhhhhhhhhhHhhh-hhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhc
Confidence 467777887775321 11122 2678888888888766542 2236677777777777776
No 93
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.12 E-value=7.5e-05 Score=80.46 Aligned_cols=214 Identities=14% Similarity=0.137 Sum_probs=131.6
Q ss_pred cCCcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHH
Q 001998 177 DVSEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAK 256 (984)
Q Consensus 177 ~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 256 (984)
.+..++||+.|+..+.+|+...-. ....+-+.|.|.+|.|||.+...|+.+..-...=-+++++.+..--...+++.
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle---~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~ 224 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLE---LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFK 224 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhh---cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHH
Confidence 456899999999999999976542 34567789999999999999999998643222223567787776677888899
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHHHhCCC--ceEEEEEcCCCCCcCChhhHHHhhcC-CCCCcEEEEEccch--HHHh-
Q 001998 257 AIIEELEGSATDLHELNSLLRRIGANIAGQ--KFFMVLDNLWTDDYRKWEPFRNCLMN-GLRGSKILLTTRKE--TVAR- 330 (984)
Q Consensus 257 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k--r~LlVlDdvw~~~~~~~~~l~~~l~~-~~~gs~iiiTtr~~--~v~~- 330 (984)
.|...+...........+.++.+.++..+. -+|+|+|.++.-....-..+...|.. .-+++|+|+.---. +..+
T Consensus 225 kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR 304 (529)
T KOG2227|consen 225 KIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDR 304 (529)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHH
Confidence 998888322111111145566666666544 58999999854211111222222222 23566666533211 1111
Q ss_pred ------h--cCCCCeEeCCCCChHhHHHHHHHHhcCCCCC-CCchhHHHHHHHHHHhcCCChHHHHHHHHhh
Q 001998 331 ------M--MESTDIVYVQGLSEPECWSLFRRFAFSGRTP-LECDQLEEIGRGIVRKCKGLPLAAKTIGSLL 393 (984)
Q Consensus 331 ------~--~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~-~~~~~l~~~~~~i~~~~~GlPLai~~~~~~l 393 (984)
. ......+...|-+.++..++|..+....... ..+..++-.|++++...|-+--|+.+.-+.+
T Consensus 305 ~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~ai 376 (529)
T KOG2227|consen 305 FLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAI 376 (529)
T ss_pred HhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 0 1224577789999999999999886433221 2233555555555555555666665555444
No 94
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.10 E-value=4.8e-05 Score=85.58 Aligned_cols=198 Identities=13% Similarity=0.178 Sum_probs=110.7
Q ss_pred CcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEE-ecCCCCHHHHHHH
Q 001998 179 SEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVC-VSDPFDEFSVAKA 257 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~-~s~~~~~~~~~~~ 257 (984)
.+++|.+..++.|..++..+. -...+.++|+.|+||||+|+.+.+.-.-...+....|.. ...+.......+.
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~------~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~ 89 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGR------VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRD 89 (397)
T ss_pred hhccChHHHHHHHHHHHHhCC------cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHH
Confidence 578999999999988886432 345678999999999999988876311111111111110 0111111111111
Q ss_pred HHHHh-------cC-CCCCcccHHHHHHHHHH-HhCCCceEEEEEcCCCCCcCChhhHHHhhcCCCCCcEEEEEc-cchH
Q 001998 258 IIEEL-------EG-SATDLHELNSLLRRIGA-NIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILLTT-RKET 327 (984)
Q Consensus 258 i~~~l-------~~-~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTt-r~~~ 327 (984)
+.... .+ ......++.++.+.+.. -..+++-++|+|++..-....++.+...+......+.+|++| +...
T Consensus 90 ~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~k 169 (397)
T PRK14955 90 FDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHK 169 (397)
T ss_pred HhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHH
Confidence 11110 00 00011122222222211 123455688999996655456777888877666677766655 4344
Q ss_pred HHhhc-CCCCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCChHHH
Q 001998 328 VARMM-ESTDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLPLAA 386 (984)
Q Consensus 328 v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai 386 (984)
+...+ .....+++.+++.++..+.+...+-..+.... .+.+..|++.++|.+--+
T Consensus 170 l~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~----~~al~~l~~~s~g~lr~a 225 (397)
T PRK14955 170 IPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVD----ADALQLIGRKAQGSMRDA 225 (397)
T ss_pred hHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 44322 22457889999999998888776533222122 455667999999977544
No 95
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.09 E-value=0.0001 Score=81.74 Aligned_cols=184 Identities=13% Similarity=0.107 Sum_probs=109.3
Q ss_pred CcccccHHHHHHHHHHHhcCCCC---CCCCceEEEEEEecCcchHHHHHHHHhcCccc-------------------ccC
Q 001998 179 SEVRGRDEEMRTLKSMLLCQGSD---QQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDV-------------------INN 236 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-------------------~~~ 236 (984)
++++|.+..++.|...+..+... ....-..-+.++|+.|+||||+|+.+.+...- ..|
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 46899999999999998754310 00112456889999999999999887652100 011
Q ss_pred CCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHH-HhCCCceEEEEEcCCCCCcCChhhHHHhhcCCCC
Q 001998 237 FEIRVWVCVSDPFDEFSVAKAIIEELEGSATDLHELNSLLRRIGA-NIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLR 315 (984)
Q Consensus 237 F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~ 315 (984)
.| ..++.... ......++.++.+.... -..+++-++|+|++...+......+...+.....
T Consensus 85 pD-~~~i~~~~-----------------~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~ 146 (394)
T PRK07940 85 PD-VRVVAPEG-----------------LSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPP 146 (394)
T ss_pred CC-EEEecccc-----------------ccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCC
Confidence 11 11221110 00111112222222221 1134555888899977655555667777766556
Q ss_pred CcEEEEEccch-HHHhhc-CCCCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHH
Q 001998 316 GSKILLTTRKE-TVARMM-ESTDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLPLAAKTI 389 (984)
Q Consensus 316 gs~iiiTtr~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~ 389 (984)
+..+|++|.+. .+...+ .....+.+.+++.++..+.+..... .. .+.+..+++.++|.|..+..+
T Consensus 147 ~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~-----~~----~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 147 RTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG-----VD----PETARRAARASQGHIGRARRL 213 (394)
T ss_pred CCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC-----CC----HHHHHHHHHHcCCCHHHHHHH
Confidence 67677666663 343332 3357899999999999988875321 11 344667899999999765444
No 96
>PLN03150 hypothetical protein; Provisional
Probab=98.08 E-value=5.5e-06 Score=98.70 Aligned_cols=96 Identities=24% Similarity=0.329 Sum_probs=72.9
Q ss_pred cCCCCccc-cCcccccccCccceEEecCCCcc-ccchhhccCCcccEEecccccccccccccccCCCCCCeEEeccCCCc
Q 001998 597 DGGENTVH-DIPREIEKLIHLRSLRLAGLKIE-ELPETCCKLFNLQTLDINECYRLKRLPQGVGSLVNLRHLVVSLNGDL 674 (984)
Q Consensus 597 ~l~~~~i~-~lp~~i~~L~~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l 674 (984)
++++|.+. .+|..+++|.+|++|+|++|.+. .+|..++.+++|++|+|++|.....+|..+++|++|++|++++|...
T Consensus 424 ~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~ 503 (623)
T PLN03150 424 GLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS 503 (623)
T ss_pred ECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCccc
Confidence 77777764 57888888888888888888886 78888888888888888888755578888888888888888888666
Q ss_pred ccCCccCCCC-CCCCcCCc
Q 001998 675 DYLPKGVERL-TSLRTLRE 692 (984)
Q Consensus 675 ~~~p~~i~~l-~~L~~L~~ 692 (984)
..+|..++.+ .++..+++
T Consensus 504 g~iP~~l~~~~~~~~~l~~ 522 (623)
T PLN03150 504 GRVPAALGGRLLHRASFNF 522 (623)
T ss_pred ccCChHHhhccccCceEEe
Confidence 6777766543 34444443
No 97
>PLN03150 hypothetical protein; Provisional
Probab=98.08 E-value=3.5e-06 Score=100.34 Aligned_cols=102 Identities=19% Similarity=0.268 Sum_probs=47.5
Q ss_pred eeEEeccCCCcchhhhHHhhhccccccee-cCCCCccc-cCcccccccCccceEEecCCCcc-ccchhhccCCcccEEec
Q 001998 568 LRSLLIHSPLEVLSPVLKGLFDHLTYGED-DGGENTVH-DIPREIEKLIHLRSLRLAGLKIE-ELPETCCKLFNLQTLDI 644 (984)
Q Consensus 568 Lr~L~l~~~~~~~~~~~~~~~~~l~~Lrv-~l~~~~i~-~lp~~i~~L~~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~L 644 (984)
++.|.+.++. +...++..+..++.|+. ++++|.+. .+|..++.+.+|++|+|++|.+. .+|..+++|++|++|+|
T Consensus 420 v~~L~L~~n~--L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 420 IDGLGLDNQG--LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEECCCCC--ccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 4444444443 22222333444555555 55555543 34445555555555555555544 44555555555555555
Q ss_pred ccccccccccccccCC-CCCCeEEeccC
Q 001998 645 NECYRLKRLPQGVGSL-VNLRHLVVSLN 671 (984)
Q Consensus 645 ~~~~~l~~lP~~i~~L-~~L~~L~l~~~ 671 (984)
++|.....+|..+..+ .++..+++.+|
T Consensus 498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 498 NGNSLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred cCCcccccCChHHhhccccCceEEecCC
Confidence 5554333455444332 23444444444
No 98
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.08 E-value=0.0001 Score=73.88 Aligned_cols=91 Identities=13% Similarity=0.125 Sum_probs=64.0
Q ss_pred CCceEEEEEcCCCCCcCChhhHHHhhcCCCCCcEEEEEccch-HHHhhc-CCCCeEeCCCCChHhHHHHHHHHhcCCCCC
Q 001998 285 GQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILLTTRKE-TVARMM-ESTDIVYVQGLSEPECWSLFRRFAFSGRTP 362 (984)
Q Consensus 285 ~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 362 (984)
+.+-++|+||+..-....++.+...+......+.+|++|++. .+...+ .....+.+.+++.++..+.+.+..
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~g------ 168 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQG------ 168 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHcC------
Confidence 556689999996655556677877777655667777777653 232222 234689999999999999888761
Q ss_pred CCchhHHHHHHHHHHhcCCChHH
Q 001998 363 LECDQLEEIGRGIVRKCKGLPLA 385 (984)
Q Consensus 363 ~~~~~l~~~~~~i~~~~~GlPLa 385 (984)
.. .+.+..|++.++|.|..
T Consensus 169 i~----~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 169 IS----EEAAELLLALAGGSPGA 187 (188)
T ss_pred CC----HHHHHHHHHHcCCCccc
Confidence 11 35577899999998853
No 99
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.07 E-value=0.00015 Score=75.31 Aligned_cols=151 Identities=15% Similarity=0.108 Sum_probs=90.6
Q ss_pred EEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCc
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAIIEELEGSATDLHELNSLLRRIGANIAGQK 287 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 287 (984)
..+.|+|+.|+|||+|++.+++. ....-..+.++.+..... ...+..+.+. . -
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~--~~~~~~~v~y~~~~~~~~--------------------~~~~~~~~~~----~-~ 98 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAE--LSQRGRAVGYVPLDKRAW--------------------FVPEVLEGME----Q-L 98 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEEHHHHhh--------------------hhHHHHHHhh----h-C
Confidence 47899999999999999999883 333334556665532100 0011111121 1 2
Q ss_pred eEEEEEcCCCCC-cCChhh-HHHhhcCC-CCC-cEEEEEccch---------HHHhhcCCCCeEeCCCCChHhHHHHHHH
Q 001998 288 FFMVLDNLWTDD-YRKWEP-FRNCLMNG-LRG-SKILLTTRKE---------TVARMMESTDIVYVQGLSEPECWSLFRR 354 (984)
Q Consensus 288 ~LlVlDdvw~~~-~~~~~~-l~~~l~~~-~~g-s~iiiTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~ 354 (984)
-+|++||+.... ...|+. +...+... ..| .++|+||+.. .+...+....+++++++++++-.+++.+
T Consensus 99 dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~ 178 (235)
T PRK08084 99 SLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQL 178 (235)
T ss_pred CEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHH
Confidence 389999995432 134543 22333221 123 3799999854 3444556668999999999999999887
Q ss_pred HhcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHH
Q 001998 355 FAFSGRTPLECDQLEEIGRGIVRKCKGLPLAAKTI 389 (984)
Q Consensus 355 ~~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~ 389 (984)
++...+- .. -+++..-|++.+.|..-++..+
T Consensus 179 ~a~~~~~-~l---~~~v~~~L~~~~~~d~r~l~~~ 209 (235)
T PRK08084 179 RARLRGF-EL---PEDVGRFLLKRLDREMRTLFMT 209 (235)
T ss_pred HHHHcCC-CC---CHHHHHHHHHhhcCCHHHHHHH
Confidence 6643221 11 2455666888888766555443
No 100
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.07 E-value=6.5e-07 Score=92.21 Aligned_cols=84 Identities=20% Similarity=0.195 Sum_probs=50.0
Q ss_pred hccccccee-cCCCCcccc-----CcccccccCccceEEecCCC----ccccchh-------hccCCcccEEeccccccc
Q 001998 588 FDHLTYGED-DGGENTVHD-----IPREIEKLIHLRSLRLAGLK----IEELPET-------CCKLFNLQTLDINECYRL 650 (984)
Q Consensus 588 ~~~l~~Lrv-~l~~~~i~~-----lp~~i~~L~~Lr~L~L~~~~----i~~lp~~-------i~~L~~L~~L~L~~~~~l 650 (984)
...+..+.- ++++|.+.. +-+.+.+.++|+.-++++-. ..++|+. +-..+.|++||||.|..-
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 455555555 778877643 45556667777777776532 2244443 334557777888777632
Q ss_pred ccccc----cccCCCCCCeEEeccC
Q 001998 651 KRLPQ----GVGSLVNLRHLVVSLN 671 (984)
Q Consensus 651 ~~lP~----~i~~L~~L~~L~l~~~ 671 (984)
..-+. -+.+++.|+||++.+|
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~ 130 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNC 130 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcC
Confidence 22222 2456677777777766
No 101
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.06 E-value=7.8e-05 Score=86.99 Aligned_cols=198 Identities=16% Similarity=0.175 Sum_probs=114.0
Q ss_pred CCcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCe--EEEEEecCCCCHHHHH
Q 001998 178 VSEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEI--RVWVCVSDPFDEFSVA 255 (984)
Q Consensus 178 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~--~~wv~~s~~~~~~~~~ 255 (984)
-.+++|.+..++.|.+.+..+. -..-+.++|..|+||||+|+.+.+...-...... ..+ .......-.
T Consensus 23 f~dliGq~~~v~~L~~~~~~gr------i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~----~~cg~c~~C 92 (598)
T PRK09111 23 FDDLIGQEAMVRTLTNAFETGR------IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTI----DLCGVGEHC 92 (598)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC------CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcc----ccCcccHHH
Confidence 3579999999999999886433 3456889999999999999988763111110000 000 001111111
Q ss_pred HHHHHHhc--------CCCCCcccHHHHHHHHHH-HhCCCceEEEEEcCCCCCcCChhhHHHhhcCCCCCcEEEEEc-cc
Q 001998 256 KAIIEELE--------GSATDLHELNSLLRRIGA-NIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILLTT-RK 325 (984)
Q Consensus 256 ~~i~~~l~--------~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTt-r~ 325 (984)
+.|...-. .+.....++.++...++. -..+++-++|+|++...+....+.|...+..-...+++|++| ..
T Consensus 93 ~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~ 172 (598)
T PRK09111 93 QAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEI 172 (598)
T ss_pred HHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCCh
Confidence 11111100 001111222333333221 123455589999996655455667777776655667776655 33
Q ss_pred hHHHhhc-CCCCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHH
Q 001998 326 ETVARMM-ESTDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLPLAAKTI 389 (984)
Q Consensus 326 ~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~ 389 (984)
..+...+ .....+.+..++.++....+.+.+-..+.... .+....|++.++|.+.-+...
T Consensus 173 ~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~----~eAl~lIa~~a~Gdlr~al~~ 233 (598)
T PRK09111 173 RKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVE----DEALALIARAAEGSVRDGLSL 233 (598)
T ss_pred hhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 4443332 33568899999999999998887644332222 345566899999988655443
No 102
>PRK09087 hypothetical protein; Validated
Probab=98.06 E-value=7.8e-05 Score=76.48 Aligned_cols=141 Identities=13% Similarity=0.152 Sum_probs=86.4
Q ss_pred eEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCC
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAIIEELEGSATDLHELNSLLRRIGANIAGQ 286 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 286 (984)
.+.+.|+|..|+|||+|++.+++... ..+++.. .+..+++.. +.+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-------~~~i~~~------~~~~~~~~~---------------------~~~- 88 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-------ALLIHPN------EIGSDAANA---------------------AAE- 88 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-------CEEecHH------HcchHHHHh---------------------hhc-
Confidence 35689999999999999999887421 1233221 111111111 111
Q ss_pred ceEEEEEcCCCCCcCChhhHHHhhcC-CCCCcEEEEEccc---------hHHHhhcCCCCeEeCCCCChHhHHHHHHHHh
Q 001998 287 KFFMVLDNLWTDDYRKWEPFRNCLMN-GLRGSKILLTTRK---------ETVARMMESTDIVYVQGLSEPECWSLFRRFA 356 (984)
Q Consensus 287 r~LlVlDdvw~~~~~~~~~l~~~l~~-~~~gs~iiiTtr~---------~~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 356 (984)
-+|++||+.... ..-+.+...+.. ...|..||+|++. ......+.....+++++++.++-.+++.+.+
T Consensus 89 -~~l~iDDi~~~~-~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~ 166 (226)
T PRK09087 89 -GPVLIEDIDAGG-FDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLF 166 (226)
T ss_pred -CeEEEECCCCCC-CCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHH
Confidence 278889995421 111223333322 1336679998873 3445556667899999999999999999887
Q ss_pred cCCCCCCCchhHHHHHHHHHHhcCCChHHHHH
Q 001998 357 FSGRTPLECDQLEEIGRGIVRKCKGLPLAAKT 388 (984)
Q Consensus 357 ~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~ 388 (984)
-...-... +++..-|++.+.|..-++..
T Consensus 167 ~~~~~~l~----~ev~~~La~~~~r~~~~l~~ 194 (226)
T PRK09087 167 ADRQLYVD----PHVVYYLVSRMERSLFAAQT 194 (226)
T ss_pred HHcCCCCC----HHHHHHHHHHhhhhHHHHHH
Confidence 44222121 45566688888887766654
No 103
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.05 E-value=9.5e-05 Score=76.68 Aligned_cols=152 Identities=14% Similarity=0.117 Sum_probs=87.4
Q ss_pred eEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCC
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAIIEELEGSATDLHELNSLLRRIGANIAGQ 286 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 286 (984)
...+.|+|..|+|||+||+.+++... ... ....+++..... .. + .. ...
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~-~~~-~~~~~i~~~~~~------~~----~------------------~~-~~~ 90 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADAS-YGG-RNARYLDAASPL------LA----F------------------DF-DPE 90 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH-hCC-CcEEEEehHHhH------HH----H------------------hh-ccc
Confidence 45688999999999999999988421 222 234455433211 00 0 01 123
Q ss_pred ceEEEEEcCCCCCcCChhhHHHhhcCC-CCCc-EEEEEccchHHHh--------hcCCCCeEeCCCCChHhHHHHHHHHh
Q 001998 287 KFFMVLDNLWTDDYRKWEPFRNCLMNG-LRGS-KILLTTRKETVAR--------MMESTDIVYVQGLSEPECWSLFRRFA 356 (984)
Q Consensus 287 r~LlVlDdvw~~~~~~~~~l~~~l~~~-~~gs-~iiiTtr~~~v~~--------~~~~~~~~~l~~L~~~~~~~lf~~~~ 356 (984)
.-+||+||+..-+...-..+...+... ..+. .||+|++...... .+.....+++.++++++-..++.+.+
T Consensus 91 ~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~ 170 (227)
T PRK08903 91 AELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAA 170 (227)
T ss_pred CCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHH
Confidence 347999999543322222344444321 2344 4677766533221 23334688999999988777776644
Q ss_pred cCCCCCCCchhHHHHHHHHHHhcCCChHHHHHHHHhh
Q 001998 357 FSGRTPLECDQLEEIGRGIVRKCKGLPLAAKTIGSLL 393 (984)
Q Consensus 357 ~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~~l 393 (984)
-..+... -++..+.+++.+.|.+..+..+-..+
T Consensus 171 ~~~~v~l----~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 171 AERGLQL----ADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHcCCCC----CHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 2222111 24556668888999998877666554
No 104
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.04 E-value=7.3e-05 Score=86.61 Aligned_cols=181 Identities=17% Similarity=0.191 Sum_probs=107.8
Q ss_pred CcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccc-------------------cCCCe
Q 001998 179 SEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVI-------------------NNFEI 239 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~~ 239 (984)
.+++|.+..++.+..++.... -...+.++|..|+||||+|+.+.+...-. +.|..
T Consensus 16 ~divGq~~v~~~L~~~i~~~~------~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d 89 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQR------LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVD 89 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCC------CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCc
Confidence 478999999999999886533 34567899999999999999887531100 01112
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCceEEEEEcCCCCCcCChhhHHHhhcCCCCCcEE
Q 001998 240 RVWVCVSDPFDEFSVAKAIIEELEGSATDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKI 319 (984)
Q Consensus 240 ~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~i 319 (984)
.+++..+....++ ..+++++.+.. .-..+++-++|+|++........+.+...+......+.+
T Consensus 90 ~~ei~~~~~~~vd-~ir~l~~~~~~----------------~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~f 152 (527)
T PRK14969 90 LIEVDAASNTQVD-AMRELLDNAQY----------------APTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKF 152 (527)
T ss_pred eeEeeccccCCHH-HHHHHHHHHhh----------------CcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEE
Confidence 2223222111111 11122221111 011356669999999665544566677777665556677
Q ss_pred EEEccc-hHHHhh-cCCCCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCChHHH
Q 001998 320 LLTTRK-ETVARM-MESTDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLPLAA 386 (984)
Q Consensus 320 iiTtr~-~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai 386 (984)
|++|.+ +.+... ......+++.+++.++..+.+.+.+...+...+ .+....|++.++|.+--+
T Consensus 153 IL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~~----~~al~~la~~s~Gslr~a 217 (527)
T PRK14969 153 ILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPFD----ATALQLLARAAAGSMRDA 217 (527)
T ss_pred EEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 666644 332221 122468889999999998888776543322122 344466899999977533
No 105
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.04 E-value=9.5e-05 Score=89.31 Aligned_cols=191 Identities=15% Similarity=0.173 Sum_probs=111.5
Q ss_pred CcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHH
Q 001998 179 SEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAI 258 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 258 (984)
.+++|.+..++.|..++.... -...+.++|..|+||||+|+.+.+...-..... ...+......+.|
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~r------i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~-------~~pCg~C~sC~~~ 81 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGR------INHAYLFSGPRGCGKTSSARILARSLNCVEGPT-------STPCGECDSCVAL 81 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHHhCcccCCC-------CCCCcccHHHHHH
Confidence 478999999999999987533 345678999999999999998876321101100 0001111111111
Q ss_pred HHH---------hcC-CCCCcccHHHHHHHHH-HHhCCCceEEEEEcCCCCCcCChhhHHHhhcCCCCCcEEEEEccc-h
Q 001998 259 IEE---------LEG-SATDLHELNSLLRRIG-ANIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILLTTRK-E 326 (984)
Q Consensus 259 ~~~---------l~~-~~~~~~~~~~~~~~l~-~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~-~ 326 (984)
... +.. ......++.++.+.+. .-..++.-++|||++.......++.|...+..-...+.+|++|.+ .
T Consensus 82 ~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~ 161 (824)
T PRK07764 82 APGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPD 161 (824)
T ss_pred HcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChh
Confidence 100 000 0011122222222221 112355558899999876667777888888776666676665543 4
Q ss_pred HHHhhc-CCCCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCChHHH
Q 001998 327 TVARMM-ESTDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLPLAA 386 (984)
Q Consensus 327 ~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai 386 (984)
.+...+ .....|++..++.++..+++.+..-..+.... .+....|++.++|.+..+
T Consensus 162 kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~id----~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 162 KVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPVE----PGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred hhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 444433 33678999999999998888776533222112 334456899999988443
No 106
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.03 E-value=1.4e-05 Score=86.80 Aligned_cols=66 Identities=27% Similarity=0.381 Sum_probs=52.9
Q ss_pred ccccCccceEEecCCCccccchhhccCCcccEEecccccccccccccccCCCCCCeEEeccCCCcccCCcc
Q 001998 610 IEKLIHLRSLRLAGLKIEELPETCCKLFNLQTLDINECYRLKRLPQGVGSLVNLRHLVVSLNGDLDYLPKG 680 (984)
Q Consensus 610 i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~~p~~ 680 (984)
+..+.+|++|++++|.++.+|. --.+|++|++++|..++.+|..+ .++|++|++++|..+..+|..
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s 113 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPES 113 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccc
Confidence 4557889999999999999882 23469999999998888888755 368999999988777777754
No 107
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.03 E-value=5.2e-06 Score=59.94 Aligned_cols=41 Identities=27% Similarity=0.425 Sum_probs=32.3
Q ss_pred CccceEEecCCCccccchhhccCCcccEEecccccccccccc
Q 001998 614 IHLRSLRLAGLKIEELPETCCKLFNLQTLDINECYRLKRLPQ 655 (984)
Q Consensus 614 ~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~ 655 (984)
++|++|++++|.|+.+|..+++|++|++|++++|. ++.+|.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCcC
Confidence 47889999999998888888889999999999887 666554
No 108
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.02 E-value=0.00013 Score=75.89 Aligned_cols=201 Identities=19% Similarity=0.130 Sum_probs=121.0
Q ss_pred CcccccH---HHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccc----cCCCeEEEEEecCCCCH
Q 001998 179 SEVRGRD---EEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVI----NNFEIRVWVCVSDPFDE 251 (984)
Q Consensus 179 ~~~~Gr~---~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~~s~~~~~ 251 (984)
+.++|-. +.++++.++|..+. .....-+.|||.+|.|||++++++.+..-.. ..--.++.|.+-..++.
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~----~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~ 109 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPK----RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDE 109 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCc----ccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCCh
Confidence 4556654 45556666666554 2456679999999999999999998642111 11125778888899999
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCC-CceEEEEEcCCCCCc---CChhhHH---HhhcCCCCCcEEEEEcc
Q 001998 252 FSVAKAIIEELEGSATDLHELNSLLRRIGANIAG-QKFFMVLDNLWTDDY---RKWEPFR---NCLMNGLRGSKILLTTR 324 (984)
Q Consensus 252 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~-kr~LlVlDdvw~~~~---~~~~~l~---~~l~~~~~gs~iiiTtr 324 (984)
..++..|+.+++...........+.......++. +-=+||+|++-+--. .+-..+. ..+.+.-.=+-|.+-|+
T Consensus 110 ~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 110 RRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred HHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 9999999999998765555555555554455542 334899999854111 1111222 23333344556667666
Q ss_pred chHHHhhc-----CCCCeEeCCCCChHh-HHHHHHHHh--cCCCCCCCchhHHHHHHHHHHhcCCChH
Q 001998 325 KETVARMM-----ESTDIVYVQGLSEPE-CWSLFRRFA--FSGRTPLECDQLEEIGRGIVRKCKGLPL 384 (984)
Q Consensus 325 ~~~v~~~~-----~~~~~~~l~~L~~~~-~~~lf~~~~--~~~~~~~~~~~l~~~~~~i~~~~~GlPL 384 (984)
..--+-.. ....++.+.....++ ...|+.... ..-+.+. +-...++++.|...++|+.=
T Consensus 190 ~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S-~l~~~~la~~i~~~s~G~iG 256 (302)
T PF05621_consen 190 EAYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPS-NLASPELARRIHERSEGLIG 256 (302)
T ss_pred HHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCC-CCCCHHHHHHHHHHcCCchH
Confidence 53222111 113466677776544 455553322 2222222 22347889999999999863
No 109
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.01 E-value=0.00012 Score=84.54 Aligned_cols=198 Identities=16% Similarity=0.210 Sum_probs=113.9
Q ss_pred CcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHH
Q 001998 179 SEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAI 258 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 258 (984)
.+++|.+..++.|...+.... -...+.++|..|+||||+|+.+.+..--....+ ...++.....+.|
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~r------i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~-------~~pCg~C~sC~~i 82 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENR------VAPAYLFSGTRGVGKTTIARIFAKALNCETAPT-------GEPCNTCEQCRKV 82 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCC------CCceEEEECCCCCCHHHHHHHHHHhccccCCCC-------CCCCcccHHHHHH
Confidence 478999988888888886432 245778899999999999998887421110000 0011111112222
Q ss_pred HHHhc-------C-CCCCcccHHHHHHHHHH-HhCCCceEEEEEcCCCCCcCChhhHHHhhcCCCCCcEEEEEccc-hHH
Q 001998 259 IEELE-------G-SATDLHELNSLLRRIGA-NIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILLTTRK-ETV 328 (984)
Q Consensus 259 ~~~l~-------~-~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~-~~v 328 (984)
..... . ......++..+...+.. -..+++-+||+|++..-.....+.|...+........+|++|.+ ..+
T Consensus 83 ~~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kl 162 (624)
T PRK14959 83 TQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKF 162 (624)
T ss_pred hcCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhh
Confidence 11100 0 00011112222222221 12456679999999665555566777777654445666665554 444
Q ss_pred Hhhc-CCCCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCCh-HHHHHHHHhh
Q 001998 329 ARMM-ESTDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLP-LAAKTIGSLL 393 (984)
Q Consensus 329 ~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlP-Lai~~~~~~l 393 (984)
...+ .....+++.+++.++....+...+........ .+..+.|++.++|.+ -|+..+..++
T Consensus 163 l~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~id----~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 163 PVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYD----PAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred hHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3322 33468899999999999988876654332122 345566888999855 6777666554
No 110
>PRK05642 DNA replication initiation factor; Validated
Probab=98.00 E-value=0.0002 Score=74.10 Aligned_cols=153 Identities=18% Similarity=0.206 Sum_probs=92.0
Q ss_pred EEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCc
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAIIEELEGSATDLHELNSLLRRIGANIAGQK 287 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 287 (984)
..+.|+|..|+|||.|++.+++. ....-..++|++.. ++... ..... +.+.+-.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~--~~~~~~~v~y~~~~------~~~~~--------------~~~~~----~~~~~~d 99 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLR--FEQRGEPAVYLPLA------ELLDR--------------GPELL----DNLEQYE 99 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHhCCCcEEEeeHH------HHHhh--------------hHHHH----HhhhhCC
Confidence 56889999999999999999873 32222456677543 22211 01122 2222222
Q ss_pred eEEEEEcCCCCC-cCChhh-HHHhhcC-CCCCcEEEEEccchH---------HHhhcCCCCeEeCCCCChHhHHHHHHHH
Q 001998 288 FFMVLDNLWTDD-YRKWEP-FRNCLMN-GLRGSKILLTTRKET---------VARMMESTDIVYVQGLSEPECWSLFRRF 355 (984)
Q Consensus 288 ~LlVlDdvw~~~-~~~~~~-l~~~l~~-~~~gs~iiiTtr~~~---------v~~~~~~~~~~~l~~L~~~~~~~lf~~~ 355 (984)
+||+||+.... ...|.. +...+.. ...|..||+|++... +.+.+....++++++++.++-.+++..+
T Consensus 100 -~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~k 178 (234)
T PRK05642 100 -LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLR 178 (234)
T ss_pred -EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHH
Confidence 68899996432 235554 4444432 234668999887532 2223344568899999999999999866
Q ss_pred hcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHHHH
Q 001998 356 AFSGRTPLECDQLEEIGRGIVRKCKGLPLAAKTIGS 391 (984)
Q Consensus 356 ~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~ 391 (984)
+....- ..+ +++..-|++++.|..-.+..+-.
T Consensus 179 a~~~~~-~l~---~ev~~~L~~~~~~d~r~l~~~l~ 210 (234)
T PRK05642 179 ASRRGL-HLT---DEVGHFILTRGTRSMSALFDLLE 210 (234)
T ss_pred HHHcCC-CCC---HHHHHHHHHhcCCCHHHHHHHHH
Confidence 643221 111 46667788888887655544433
No 111
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.98 E-value=8.9e-05 Score=87.55 Aligned_cols=195 Identities=16% Similarity=0.210 Sum_probs=112.9
Q ss_pred CcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHH
Q 001998 179 SEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAI 258 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 258 (984)
.+++|.+..++.|..++.... -...+.++|..|+||||+|+.+.+...-..... ....++.....+.|
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~------i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~------~~~~c~~c~~c~~i 83 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGR------VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP------KGRPCGTCEMCRAI 83 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCC------CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC------CCCCCccCHHHHHH
Confidence 579999999999988886432 345678999999999999998876311000000 00111222333333
Q ss_pred HHHhcCC--------CCCcccHHHHHHHHHHH-hCCCceEEEEEcCCCCCcCChhhHHHhhcCCCCCcEEEEEccc-hHH
Q 001998 259 IEELEGS--------ATDLHELNSLLRRIGAN-IAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILLTTRK-ETV 328 (984)
Q Consensus 259 ~~~l~~~--------~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~-~~v 328 (984)
....... .....++.++...+... ..+++-++|+|++..-.....+.|...+......+.+|++|.+ ..+
T Consensus 84 ~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kl 163 (585)
T PRK14950 84 AEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKV 163 (585)
T ss_pred hcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhh
Confidence 2211100 01111222222222211 2245668999999654444566676666665556677666644 333
Q ss_pred Hhhc-CCCCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHH
Q 001998 329 ARMM-ESTDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLPLAAKTI 389 (984)
Q Consensus 329 ~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~ 389 (984)
...+ .....+.+..++.++....+...+...+.... .+....|++.++|.+..+...
T Consensus 164 l~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~----~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 164 PATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLE----PGALEAIARAATGSMRDAENL 221 (585)
T ss_pred hHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 3322 23467889999999998888877644332222 345667999999988655443
No 112
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.98 E-value=0.0002 Score=83.13 Aligned_cols=198 Identities=16% Similarity=0.158 Sum_probs=114.8
Q ss_pred CcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHH
Q 001998 179 SEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAI 258 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 258 (984)
.+++|.+..++.|..++..+. -...+.++|..|+||||+|+.+.+...-....+ ..+++.....+.|
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r------~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~-------~~pCg~C~~C~~i 79 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGR------INHAYLFSGPRGCGKTSSARILARSLNCAQGPT-------ATPCGVCESCVAL 79 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCC------CCeEEEEECCCCCCHHHHHHHHHHHhccccCCC-------CCcccccHHHHHh
Confidence 578999999999999986432 345678999999999999998876311000000 0011111111111
Q ss_pred HHH---------hcC-CCCCcccHHHHHHHHHHH-hCCCceEEEEEcCCCCCcCChhhHHHhhcCCCCCcEEEEEc-cch
Q 001998 259 IEE---------LEG-SATDLHELNSLLRRIGAN-IAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILLTT-RKE 326 (984)
Q Consensus 259 ~~~---------l~~-~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTt-r~~ 326 (984)
... +.. ...+..++.++...+... ..+++-++|+|++..-.....+.|...+........+|++| ...
T Consensus 80 ~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~ 159 (584)
T PRK14952 80 APNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPE 159 (584)
T ss_pred hcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChH
Confidence 110 000 001112223333333221 23555689999997666666777777777665566666555 444
Q ss_pred HHHhh-cCCCCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCChH-HHHHHHHhh
Q 001998 327 TVARM-MESTDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLPL-AAKTIGSLL 393 (984)
Q Consensus 327 ~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlPL-ai~~~~~~l 393 (984)
.+... ......+++.+++.++..+.+.+.+...+...+ .+....|++.++|.+- |+..+-.++
T Consensus 160 kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~----~~al~~Ia~~s~GdlR~aln~Ldql~ 224 (584)
T PRK14952 160 KVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVD----DAVYPLVIRAGGGSPRDTLSVLDQLL 224 (584)
T ss_pred hhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 44433 233678999999999998888776644332222 3345568899999774 444444444
No 113
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.98 E-value=7.3e-05 Score=83.37 Aligned_cols=183 Identities=13% Similarity=0.125 Sum_probs=101.0
Q ss_pred ccCCcccccHHHHHHHHHHHhcCCCC------CCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCC
Q 001998 176 IDVSEVRGRDEEMRTLKSMLLCQGSD------QQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPF 249 (984)
Q Consensus 176 ~~~~~~~Gr~~~~~~l~~~L~~~~~~------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~ 249 (984)
....++.|+++.++++.+.+...-.. .+-...+-+.++|++|+|||++|+.+++. ....| +.+.
T Consensus 119 ~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~--l~~~~-----~~v~--- 188 (364)
T TIGR01242 119 VSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNATF-----IRVV--- 188 (364)
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--CCCCE-----Eecc---
Confidence 34457999999999999877432100 00122455889999999999999999984 33333 2221
Q ss_pred CHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCceEEEEEcCCCCC-----------cCChhhHHHhh---cC--C
Q 001998 250 DEFSVAKAIIEELEGSATDLHELNSLLRRIGANIAGQKFFMVLDNLWTDD-----------YRKWEPFRNCL---MN--G 313 (984)
Q Consensus 250 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~-----------~~~~~~l~~~l---~~--~ 313 (984)
...+. ....+. ....+...+...-...+.+|++|+++.-. ......+...+ .. .
T Consensus 189 -~~~l~----~~~~g~-----~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~ 258 (364)
T TIGR01242 189 -GSELV----RKYIGE-----GARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDP 258 (364)
T ss_pred -hHHHH----HHhhhH-----HHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCC
Confidence 11111 111110 01111222222223567899999986421 01112232222 11 1
Q ss_pred CCCcEEEEEccchHHHh-hc----CCCCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCCh
Q 001998 314 LRGSKILLTTRKETVAR-MM----ESTDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLP 383 (984)
Q Consensus 314 ~~gs~iiiTtr~~~v~~-~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlP 383 (984)
..+.+||.||....... .+ .-...+.+...+.++..++|..++...... ..-.+. .+++.+.|..
T Consensus 259 ~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~-~~~~~~----~la~~t~g~s 328 (364)
T TIGR01242 259 RGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLA-EDVDLE----AIAKMTEGAS 328 (364)
T ss_pred CCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCC-ccCCHH----HHHHHcCCCC
Confidence 34677888887643221 11 114578899999999999999877543321 112333 4677776654
No 114
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.97 E-value=0.00017 Score=73.65 Aligned_cols=158 Identities=13% Similarity=0.148 Sum_probs=92.5
Q ss_pred eEEEEEEecCcchHHHHHHHHhcCcccccC-C-CeEEEEEecCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhC
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYNDNDVINN-F-EIRVWVCVSDPFDEFSVAKAIIEELEGSATDLHELNSLLRRIGANIA 284 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F-~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 284 (984)
...+.|+|..|+|||.|.+++++. ..+. - ..++++ +..++...+...+.. ...++ +++.+.
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~--~~~~~~~~~v~y~------~~~~f~~~~~~~~~~-----~~~~~----~~~~~~ 96 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANE--AQKQHPGKRVVYL------SAEEFIREFADALRD-----GEIEE----FKDRLR 96 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHH--HHHHCTTS-EEEE------EHHHHHHHHHHHHHT-----TSHHH----HHHHHC
T ss_pred CCceEEECCCCCCHHHHHHHHHHH--HHhccccccceee------cHHHHHHHHHHHHHc-----ccchh----hhhhhh
Confidence 445789999999999999999984 3322 2 245566 455677777776654 12222 333334
Q ss_pred CCceEEEEEcCCCCCc-CChhh-HHHhhcC-CCCCcEEEEEccch---------HHHhhcCCCCeEeCCCCChHhHHHHH
Q 001998 285 GQKFFMVLDNLWTDDY-RKWEP-FRNCLMN-GLRGSKILLTTRKE---------TVARMMESTDIVYVQGLSEPECWSLF 352 (984)
Q Consensus 285 ~kr~LlVlDdvw~~~~-~~~~~-l~~~l~~-~~~gs~iiiTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf 352 (984)
.-=+|++||+..-.. ..|.. +...+.. ...|-+||+|++.. .+.+.+...-.+++++.+.++-.+++
T Consensus 97 -~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il 175 (219)
T PF00308_consen 97 -SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRIL 175 (219)
T ss_dssp -TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHH
T ss_pred -cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHH
Confidence 334889999965322 22333 2222222 13466899999652 34444556678999999999999999
Q ss_pred HHHhcCCCCCCCchhHHHHHHHHHHhcCCChHHH
Q 001998 353 RRFAFSGRTPLECDQLEEIGRGIVRKCKGLPLAA 386 (984)
Q Consensus 353 ~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai 386 (984)
.+++...+-. --+++++-|++.+.+..-.+
T Consensus 176 ~~~a~~~~~~----l~~~v~~~l~~~~~~~~r~L 205 (219)
T PF00308_consen 176 QKKAKERGIE----LPEEVIEYLARRFRRDVREL 205 (219)
T ss_dssp HHHHHHTT------S-HHHHHHHHHHTTSSHHHH
T ss_pred HHHHHHhCCC----CcHHHHHHHHHhhcCCHHHH
Confidence 9887543321 12455556766666554443
No 115
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.97 E-value=5.3e-05 Score=78.41 Aligned_cols=146 Identities=20% Similarity=0.268 Sum_probs=93.5
Q ss_pred CCcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHH
Q 001998 178 VSEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKA 257 (984)
Q Consensus 178 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 257 (984)
..+++|-+.-+..+++ .....-+.+||.+|.||||||+.+.+..+-.. ..||..|.......-.++
T Consensus 143 Q~hlv~q~gllrs~ie----------q~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ 208 (554)
T KOG2028|consen 143 QSHLVGQDGLLRSLIE----------QNRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRD 208 (554)
T ss_pred hhhhcCcchHHHHHHH----------cCCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHH
Confidence 3455555444444443 23466778999999999999999998533322 556776655544444555
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHHHhCCCceEEEEEcCCCCCcCChhhHHHhhcCCCCCcEEEE--EccchHH---Hhhc
Q 001998 258 IIEELEGSATDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILL--TTRKETV---ARMM 332 (984)
Q Consensus 258 i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iii--Ttr~~~v---~~~~ 332 (984)
|.++... ...+.++|.+|++|.|..-+..+-+ .+||.-..|+-++| ||.+... +..+
T Consensus 209 ife~aq~---------------~~~l~krkTilFiDEiHRFNksQQD---~fLP~VE~G~I~lIGATTENPSFqln~aLl 270 (554)
T KOG2028|consen 209 IFEQAQN---------------EKSLTKRKTILFIDEIHRFNKSQQD---TFLPHVENGDITLIGATTENPSFQLNAALL 270 (554)
T ss_pred HHHHHHH---------------HHhhhcceeEEEeHHhhhhhhhhhh---cccceeccCceEEEecccCCCccchhHHHH
Confidence 5444321 1234688999999999543222222 23555566776666 6766532 2334
Q ss_pred CCCCeEeCCCCChHhHHHHHHHH
Q 001998 333 ESTDIVYVQGLSEPECWSLFRRF 355 (984)
Q Consensus 333 ~~~~~~~l~~L~~~~~~~lf~~~ 355 (984)
....++.|+.|+.++-..++.+.
T Consensus 271 SRC~VfvLekL~~n~v~~iL~ra 293 (554)
T KOG2028|consen 271 SRCRVFVLEKLPVNAVVTILMRA 293 (554)
T ss_pred hccceeEeccCCHHHHHHHHHHH
Confidence 55789999999999999988774
No 116
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.97 E-value=6.9e-06 Score=64.93 Aligned_cols=56 Identities=27% Similarity=0.407 Sum_probs=48.0
Q ss_pred ccee-cCCCCccccCc-ccccccCccceEEecCCCccccch-hhccCCcccEEeccccc
Q 001998 593 YGED-DGGENTVHDIP-REIEKLIHLRSLRLAGLKIEELPE-TCCKLFNLQTLDINECY 648 (984)
Q Consensus 593 ~Lrv-~l~~~~i~~lp-~~i~~L~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~ 648 (984)
.|+. ++++|.+..+| ..+.++++|++|++++|.++.+|+ .+.++++|++|++++|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4556 77788888887 467889999999999999998875 78999999999999986
No 117
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.95 E-value=0.00024 Score=79.57 Aligned_cols=179 Identities=15% Similarity=0.195 Sum_probs=103.9
Q ss_pred CcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCccc------ccCCCeEE-EEEecCCCCH
Q 001998 179 SEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDV------INNFEIRV-WVCVSDPFDE 251 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~------~~~F~~~~-wv~~s~~~~~ 251 (984)
.+++|.+..++.+...+..+. -.+.+.++|..|+||||+|+.+.+...- ...|...+ -+......+.
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~------~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 90 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNH------LAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSV 90 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCC------CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCH
Confidence 478999999999999886432 3468889999999999999988763111 01121111 1111111111
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHH-HhCCCceEEEEEcCCCCCcCChhhHHHhhcCCCCCcEEEEEccc-hHHH
Q 001998 252 FSVAKAIIEELEGSATDLHELNSLLRRIGA-NIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILLTTRK-ETVA 329 (984)
Q Consensus 252 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~-~~v~ 329 (984)
.++.++...+.. -..+++-++|+|++.......+..+...+......+.+|++|.. ..+.
T Consensus 91 ------------------~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~ 152 (367)
T PRK14970 91 ------------------DDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKII 152 (367)
T ss_pred ------------------HHHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCC
Confidence 111112211111 12345558999998544334466666666554445566655533 2332
Q ss_pred hh-cCCCCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCChHH
Q 001998 330 RM-MESTDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLPLA 385 (984)
Q Consensus 330 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlPLa 385 (984)
.. ......+++.+++.++....+...+...+.... .+..+.+++.++|.+-.
T Consensus 153 ~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~----~~al~~l~~~~~gdlr~ 205 (367)
T PRK14970 153 PTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKFE----DDALHIIAQKADGALRD 205 (367)
T ss_pred HHHHhcceeEecCCccHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHhCCCCHHH
Confidence 22 223457899999999999888887654332222 34556688888886543
No 118
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.95 E-value=2.8e-05 Score=84.09 Aligned_cols=89 Identities=18% Similarity=0.112 Sum_probs=62.3
Q ss_pred eEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCC--CCHHHHHHHHHHHhcCCCCCcccH------HHHHHH
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDP--FDEFSVAKAIIEELEGSATDLHEL------NSLLRR 278 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~--~~~~~~~~~i~~~l~~~~~~~~~~------~~~~~~ 278 (984)
-..++|+|.+|.|||||++.+++.... .+|+..+||.+.++ .++.++++.+...+-....+.... ..+.+.
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~-nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~ 246 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITR-NHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEK 246 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhcc-cCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHH
Confidence 356899999999999999999996333 37999999999876 799999999965443222221111 122222
Q ss_pred HHHH-hCCCceEEEEEcCC
Q 001998 279 IGAN-IAGQKFFMVLDNLW 296 (984)
Q Consensus 279 l~~~-l~~kr~LlVlDdvw 296 (984)
.... -++++.+|++|++.
T Consensus 247 Ae~~~~~GkdVVLlIDEit 265 (415)
T TIGR00767 247 AKRLVEHKKDVVILLDSIT 265 (415)
T ss_pred HHHHHHcCCCeEEEEEChh
Confidence 2222 36899999999993
No 119
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.91 E-value=0.00029 Score=82.47 Aligned_cols=202 Identities=13% Similarity=0.196 Sum_probs=111.5
Q ss_pred CcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEE-ecCCCCHHHHHHH
Q 001998 179 SEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVC-VSDPFDEFSVAKA 257 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~-~s~~~~~~~~~~~ 257 (984)
.+++|.+..++.+...+..+. -...+.++|..|+||||+|+.+.+.-.-...++.-.|-. +..........+.
T Consensus 16 ~eivGQe~i~~~L~~~i~~~r------i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~ 89 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDR------VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRD 89 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCC------CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHH
Confidence 578999999999998886432 345688999999999999988776311111111001110 0011111111121
Q ss_pred HHHH-------hcC-CCCCcccHHHHHHHHHH-HhCCCceEEEEEcCCCCCcCChhhHHHhhcCCCCCcEEEEEc-cchH
Q 001998 258 IIEE-------LEG-SATDLHELNSLLRRIGA-NIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILLTT-RKET 327 (984)
Q Consensus 258 i~~~-------l~~-~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTt-r~~~ 327 (984)
+... +.+ ......++.++.+.+.. -..+++-++|+|++..-.....+.|...+..-...+.+|++| +...
T Consensus 90 ~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~k 169 (620)
T PRK14954 90 FDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHK 169 (620)
T ss_pred HhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhh
Confidence 1110 000 00111222222222211 123555689999996655455667777776655566665555 4344
Q ss_pred HHhh-cCCCCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCChH-HHHHHH
Q 001998 328 VARM-MESTDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLPL-AAKTIG 390 (984)
Q Consensus 328 v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlPL-ai~~~~ 390 (984)
+... ......+++.+++.++....+.+.+...+.... .+.++.|++.++|..- |+..+-
T Consensus 170 Ll~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I~----~eal~~La~~s~Gdlr~al~eLe 230 (620)
T PRK14954 170 IPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQID----ADALQLIARKAQGSMRDAQSILD 230 (620)
T ss_pred hhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHhCCCHHHHHHHHH
Confidence 4433 234678999999999988888776543222122 3455669999999554 444443
No 120
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.89 E-value=0.00051 Score=78.67 Aligned_cols=184 Identities=15% Similarity=0.174 Sum_probs=108.1
Q ss_pred CcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCccc---c----------------cCCCe
Q 001998 179 SEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDV---I----------------NNFEI 239 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~----------------~~F~~ 239 (984)
.+++|.+..++.+.+.+.... -...+.++|..|+||||+|+.++....- . +.|..
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~------i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d 89 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQR------VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPD 89 (486)
T ss_pred HHccChHHHHHHHHHHHHcCC------CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCc
Confidence 478899999999999986432 3456778999999999999887763110 0 01111
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHH-HhCCCceEEEEEcCCCCCcCChhhHHHhhcCCCCCcE
Q 001998 240 RVWVCVSDPFDEFSVAKAIIEELEGSATDLHELNSLLRRIGA-NIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSK 318 (984)
Q Consensus 240 ~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ 318 (984)
.+++..+... +..+...+...+.. -..+++-++|+|++..-.....+.+...+........
T Consensus 90 ~~eidaas~~------------------gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v 151 (486)
T PRK14953 90 LIEIDAASNR------------------GIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTI 151 (486)
T ss_pred EEEEeCccCC------------------CHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeE
Confidence 2222211111 11112222222221 1235667999999965444455667666666555556
Q ss_pred EEEEc-cchHHHhh-cCCCCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHHH
Q 001998 319 ILLTT-RKETVARM-MESTDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLPLAAKTIG 390 (984)
Q Consensus 319 iiiTt-r~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~ 390 (984)
+|++| +...+... ......+.+.+++.++....+.+.+-..+...+ .+....|++.++|.+-.+....
T Consensus 152 ~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~id----~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 152 FILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYE----EKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred EEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 66555 43333322 223458899999999998888876643332222 3445568888999776554443
No 121
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.89 E-value=0.00038 Score=81.82 Aligned_cols=190 Identities=16% Similarity=0.196 Sum_probs=108.6
Q ss_pred CcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCC--C---eEEE-EEecCCCCHH
Q 001998 179 SEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNF--E---IRVW-VCVSDPFDEF 252 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~---~~~w-v~~s~~~~~~ 252 (984)
.+++|.+..++.+...+.... -...+.++|+.|+||||+|+.+++.. ...+. . |... .+....++..
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~r------l~HAYLF~GP~GtGKTt~AriLAk~L-nC~~~~~~~~pC~~C~~~~~~~~Dvi 90 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNK------ISHAYLFSGPRGTGKTSVAKIFANAL-NCSHKTDLLEPCQECIENVNNSLDII 90 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCC------CCeEEEEECCCCCcHHHHHHHHHHHh-cccccCCCCCchhHHHHhhcCCCcEE
Confidence 478999999999999886432 35567789999999999999887631 01010 0 0000 0000000000
Q ss_pred HHHHHHHHHhcC-CCCCcccHHHHHHHHHHH-hCCCceEEEEEcCCCCCcCChhhHHHhhcCCCCCcEEEE-EccchHHH
Q 001998 253 SVAKAIIEELEG-SATDLHELNSLLRRIGAN-IAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILL-TTRKETVA 329 (984)
Q Consensus 253 ~~~~~i~~~l~~-~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iii-Ttr~~~v~ 329 (984)
.+.+ ......++.++...+... ..+++-++|+|++..-....+..+...+-.......+|+ |++...+.
T Consensus 91 --------eidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl 162 (725)
T PRK07133 91 --------EMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIP 162 (725)
T ss_pred --------EEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhh
Confidence 0000 001112233333333221 235666999999966555567777776665544555554 44444444
Q ss_pred hh-cCCCCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCChHHHH
Q 001998 330 RM-MESTDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLPLAAK 387 (984)
Q Consensus 330 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~ 387 (984)
.. ......+++.+++.++....+...+...+.... .+.++.|++.++|.+--+.
T Consensus 163 ~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~id----~eAl~~LA~lS~GslR~Al 217 (725)
T PRK07133 163 LTILSRVQRFNFRRISEDEIVSRLEFILEKENISYE----KNALKLIAKLSSGSLRDAL 217 (725)
T ss_pred HHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHH
Confidence 33 233568999999999999888876543322111 3445679999998764433
No 122
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.88 E-value=0.0002 Score=81.33 Aligned_cols=168 Identities=15% Similarity=0.101 Sum_probs=102.4
Q ss_pred EEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCc
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAIIEELEGSATDLHELNSLLRRIGANIAGQK 287 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 287 (984)
.-+.|+|..|+|||+|++.+.+.......-..++++ +..++...+...+.... .....+.+.+. +.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv------~~~~f~~~~~~~l~~~~-------~~~~~~~~~~~-~~ 207 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYM------SGDEFARKAVDILQKTH-------KEIEQFKNEIC-QN 207 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEE------EHHHHHHHHHHHHHHhh-------hHHHHHHHHhc-cC
Confidence 458899999999999999998832111112234555 34567777776664311 11223333333 34
Q ss_pred eEEEEEcCCCCCc-CCh-hhHHHhhcC-CCCCcEEEEEccch---------HHHhhcCCCCeEeCCCCChHhHHHHHHHH
Q 001998 288 FFMVLDNLWTDDY-RKW-EPFRNCLMN-GLRGSKILLTTRKE---------TVARMMESTDIVYVQGLSEPECWSLFRRF 355 (984)
Q Consensus 288 ~LlVlDdvw~~~~-~~~-~~l~~~l~~-~~~gs~iiiTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~~ 355 (984)
-+||+||+..... ..| +.+...+.. ...|..||+|+... .+...+...-.+.+++++.++-.+++.++
T Consensus 208 dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~ 287 (450)
T PRK14087 208 DVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKE 287 (450)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHH
Confidence 4889999965322 122 233333332 23455788887643 23334455568889999999999999988
Q ss_pred hcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHHHH
Q 001998 356 AFSGRTPLECDQLEEIGRGIVRKCKGLPLAAKTIGS 391 (984)
Q Consensus 356 ~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~ 391 (984)
+-..+-. ..--+++..-|++.++|.|-.+.-+..
T Consensus 288 ~~~~gl~--~~l~~evl~~Ia~~~~gd~R~L~gaL~ 321 (450)
T PRK14087 288 IKNQNIK--QEVTEEAINFISNYYSDDVRKIKGSVS 321 (450)
T ss_pred HHhcCCC--CCCCHHHHHHHHHccCCCHHHHHHHHH
Confidence 7432210 012256777899999999977755543
No 123
>PF14516 AAA_35: AAA-like domain
Probab=97.87 E-value=0.0013 Score=71.96 Aligned_cols=203 Identities=11% Similarity=0.096 Sum_probs=119.1
Q ss_pred ccCCcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCC-----CC
Q 001998 176 IDVSEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDP-----FD 250 (984)
Q Consensus 176 ~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-----~~ 250 (984)
.+.+..|+|...-+++.+.+..+ -..+.|.|.-.+|||+|...+.+..+. ..| ..+++++..- .+
T Consensus 8 ~~~~~Yi~R~~~e~~~~~~i~~~--------G~~~~I~apRq~GKTSll~~l~~~l~~-~~~-~~v~id~~~~~~~~~~~ 77 (331)
T PF14516_consen 8 LDSPFYIERPPAEQECYQEIVQP--------GSYIRIKAPRQMGKTSLLLRLLERLQQ-QGY-RCVYIDLQQLGSAIFSD 77 (331)
T ss_pred CCCCcccCchHHHHHHHHHHhcC--------CCEEEEECcccCCHHHHHHHHHHHHHH-CCC-EEEEEEeecCCCcccCC
Confidence 34556779986777777777543 247899999999999999998874322 234 4557776542 34
Q ss_pred HHHHHHHHHHHhcC----CCC-------CcccHHHHHHHHHHHh---CCCceEEEEEcCCCCC--cCChhhHHHhhcC--
Q 001998 251 EFSVAKAIIEELEG----SAT-------DLHELNSLLRRIGANI---AGQKFFMVLDNLWTDD--YRKWEPFRNCLMN-- 312 (984)
Q Consensus 251 ~~~~~~~i~~~l~~----~~~-------~~~~~~~~~~~l~~~l---~~kr~LlVlDdvw~~~--~~~~~~l~~~l~~-- 312 (984)
...+++.++..+.. ... ...........+.+.+ .+++.+|++|++..-- ....+.+...++.
T Consensus 78 ~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~ 157 (331)
T PF14516_consen 78 LEQFLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWY 157 (331)
T ss_pred HHHHHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHH
Confidence 56566666555532 210 0111122333344332 2689999999996421 1111233333321
Q ss_pred --CC----CCc-EEEE-Ecc-chHHHhh----cCCCCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhc
Q 001998 313 --GL----RGS-KILL-TTR-KETVARM----MESTDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKC 379 (984)
Q Consensus 313 --~~----~gs-~iii-Ttr-~~~v~~~----~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~ 379 (984)
.. ..+ +.++ .+. .....+. +.....++|.+++.+|...|...+... .. ....++|...+
T Consensus 158 ~~~~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~----~~----~~~~~~l~~~t 229 (331)
T PF14516_consen 158 EQRKNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE----FS----QEQLEQLMDWT 229 (331)
T ss_pred HhcccCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc----CC----HHHHHHHHHHH
Confidence 11 111 2222 221 1111111 122458889999999999999876432 11 12267799999
Q ss_pred CCChHHHHHHHHhhccC
Q 001998 380 KGLPLAAKTIGSLLQFK 396 (984)
Q Consensus 380 ~GlPLai~~~~~~l~~~ 396 (984)
||+|.-+..++..+..+
T Consensus 230 gGhP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 230 GGHPYLVQKACYLLVEE 246 (331)
T ss_pred CCCHHHHHHHHHHHHHc
Confidence 99999999999999664
No 124
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.86 E-value=0.00049 Score=78.73 Aligned_cols=179 Identities=13% Similarity=0.123 Sum_probs=111.0
Q ss_pred CcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCccc--c------------------cCCC
Q 001998 179 SEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDV--I------------------NNFE 238 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~--~------------------~~F~ 238 (984)
.+++|-+...+.+...+.... -..+..++|..|+||||+|+.+.+..-- . .|++
T Consensus 14 deiiGqe~v~~~L~~~I~~gr------l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~d 87 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNR------LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHID 87 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCC------CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCe
Confidence 579999999999999886432 3457789999999999999877652100 0 0111
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHH----HhCCCceEEEEEcCCCCCcCChhhHHHhhcCCC
Q 001998 239 IRVWVCVSDPFDEFSVAKAIIEELEGSATDLHELNSLLRRIGA----NIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGL 314 (984)
Q Consensus 239 ~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~----~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~ 314 (984)
++.+..+.... .+++.+.+.. -..+++-++|+|++...+.+..+.+...+....
T Consensus 88 -v~eldaas~~g---------------------Id~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp 145 (535)
T PRK08451 88 -IIEMDAASNRG---------------------IDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPP 145 (535)
T ss_pred -EEEeccccccC---------------------HHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcC
Confidence 12222111111 2222222211 112455689999997666566677777776655
Q ss_pred CCcEEEEEccch-HHHhh-cCCCCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHH
Q 001998 315 RGSKILLTTRKE-TVARM-MESTDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLPLAAKTI 389 (984)
Q Consensus 315 ~gs~iiiTtr~~-~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~ 389 (984)
..+++|++|.+. .+... ......+++.+++.++....+.+.+...+.... .+....|++.++|.+--+..+
T Consensus 146 ~~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~----~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 146 SYVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYE----PEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred CceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCcHHHHHHH
Confidence 667777777653 22221 123568999999999998888776643332222 345567999999988555444
No 125
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.86 E-value=0.0006 Score=71.80 Aligned_cols=167 Identities=19% Similarity=0.237 Sum_probs=105.9
Q ss_pred CCcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHH
Q 001998 178 VSEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKA 257 (984)
Q Consensus 178 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 257 (984)
.+.+.+|+.+++.+...+.... ..-...|.|+|..|.|||.+.+++++... ...+|+++-.-|+.+.++..
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~----~~~PS~~~iyG~sgTGKT~~~r~~l~~~n-----~~~vw~n~~ecft~~~lle~ 75 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNS----CTIPSIVHIYGHSGTGKTYLVRQLLRKLN-----LENVWLNCVECFTYAILLEK 75 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCC----cccceeEEEeccCCCchhHHHHHHHhhcC-----CcceeeehHHhccHHHHHHH
Confidence 4678899999999998886543 12356678999999999999999998541 23689999999999999999
Q ss_pred HHHHhcCCCCC--cccH--H---HHHHHHHH--HhC--CCceEEEEEcCCCCCcCChhh-HHHhhc---C-CCCCcEEEE
Q 001998 258 IIEELEGSATD--LHEL--N---SLLRRIGA--NIA--GQKFFMVLDNLWTDDYRKWEP-FRNCLM---N-GLRGSKILL 321 (984)
Q Consensus 258 i~~~l~~~~~~--~~~~--~---~~~~~l~~--~l~--~kr~LlVlDdvw~~~~~~~~~-l~~~l~---~-~~~gs~iii 321 (984)
|+.+....+.+ ..+. + .....+.+ ..+ ++.++||||++.. ..+.+. +...+. . -....-+|+
T Consensus 76 IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~--lrD~~a~ll~~l~~L~el~~~~~i~ii 153 (438)
T KOG2543|consen 76 ILNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADA--LRDMDAILLQCLFRLYELLNEPTIVII 153 (438)
T ss_pred HHHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHh--hhccchHHHHHHHHHHHHhCCCceEEE
Confidence 99998522111 1111 2 22222322 222 4689999999943 334443 222211 1 112233444
Q ss_pred EccchHHH---hhcCCC--CeEeCCCCChHhHHHHHHHH
Q 001998 322 TTRKETVA---RMMEST--DIVYVQGLSEPECWSLFRRF 355 (984)
Q Consensus 322 Ttr~~~v~---~~~~~~--~~~~l~~L~~~~~~~lf~~~ 355 (984)
++--..-. ..+|+. .++....-+.+|..+++.+.
T Consensus 154 ls~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 154 LSAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred EeccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 44332222 123443 35567888899999988653
No 126
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.85 E-value=0.00039 Score=81.95 Aligned_cols=180 Identities=17% Similarity=0.168 Sum_probs=110.3
Q ss_pred CcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcc---------------------cccCC
Q 001998 179 SEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDND---------------------VINNF 237 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~---------------------~~~~F 237 (984)
.+++|.+..++.+..++.... -...+.++|..|+||||+|+.+.+... ...+|
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~------l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~ 90 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNK------LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSY 90 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCC------CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCC
Confidence 478999999999999986432 356688999999999999987765311 01133
Q ss_pred CeEEEEEecCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCceEEEEEcCCCCCcCChhhHHHhhcCCCCCc
Q 001998 238 EIRVWVCVSDPFDEFSVAKAIIEELEGSATDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGS 317 (984)
Q Consensus 238 ~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs 317 (984)
+. ..+..+....++. .+++++++... -..+++=++|+|++..-+...++.+...+..-...+
T Consensus 91 n~-~~ld~~~~~~vd~-Ir~li~~~~~~----------------P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~t 152 (614)
T PRK14971 91 NI-HELDAASNNSVDD-IRNLIEQVRIP----------------PQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYA 152 (614)
T ss_pred ce-EEecccccCCHHH-HHHHHHHHhhC----------------cccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCe
Confidence 32 1222221111111 11121221110 012445588999997655556777888777765667
Q ss_pred EEEEEc-cchHHHhhc-CCCCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCChHHH
Q 001998 318 KILLTT-RKETVARMM-ESTDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLPLAA 386 (984)
Q Consensus 318 ~iiiTt-r~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai 386 (984)
.+|++| +...+...+ .....+++.+++.++....+.+.+...+...+ .+.+..|++.++|-.--+
T Consensus 153 ifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~----~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 153 IFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAE----PEALNVIAQKADGGMRDA 219 (614)
T ss_pred EEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 766555 444444332 33578999999999999888876644332222 344566999999866544
No 127
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.85 E-value=8.7e-05 Score=81.83 Aligned_cols=108 Identities=10% Similarity=0.065 Sum_probs=72.8
Q ss_pred CcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHH
Q 001998 179 SEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAI 258 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 258 (984)
.++++.+...+.+...|... +.+.++|++|+|||++|+.+++.......|+.+.||.+++.++..++...+
T Consensus 175 ~d~~i~e~~le~l~~~L~~~---------~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~ 245 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK---------KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGY 245 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC---------CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhccc
Confidence 46888999999999998642 357789999999999999999854444578889999999988877765432
Q ss_pred HHHhcCCCCCccc-HHHHHHHHHHHh--CCCceEEEEEcCCCCC
Q 001998 259 IEELEGSATDLHE-LNSLLRRIGANI--AGQKFFMVLDNLWTDD 299 (984)
Q Consensus 259 ~~~l~~~~~~~~~-~~~~~~~l~~~l--~~kr~LlVlDdvw~~~ 299 (984)
. ....+..- .....+.+++.. .++++++|+|++-..+
T Consensus 246 r----P~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRan 285 (459)
T PRK11331 246 R----PNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRAN 285 (459)
T ss_pred C----CCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccC
Confidence 1 01111100 011222222222 2578999999995544
No 128
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.84 E-value=2.4e-06 Score=97.23 Aligned_cols=80 Identities=26% Similarity=0.303 Sum_probs=37.8
Q ss_pred ccccccee-cCCCCccccCcccccccCccceEEecCCCccccchhhccCCcccEEecccccccccccccccCCCCCCeEE
Q 001998 589 DHLTYGED-DGGENTVHDIPREIEKLIHLRSLRLAGLKIEELPETCCKLFNLQTLDINECYRLKRLPQGVGSLVNLRHLV 667 (984)
Q Consensus 589 ~~l~~Lrv-~l~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~ 667 (984)
..++.|.. ++.+|.|..+...+..+.+|++|+|++|.|+.+. .+..|..|+.|++++|. +..++. +..+++|+.++
T Consensus 92 ~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~-i~~~~~-~~~l~~L~~l~ 168 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNL-ISDISG-LESLKSLKLLD 168 (414)
T ss_pred ccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheeccCc-chhccC-Cccchhhhccc
Confidence 44444444 5555555444444445555555555555554442 33344445555555544 444332 33345555555
Q ss_pred eccC
Q 001998 668 VSLN 671 (984)
Q Consensus 668 l~~~ 671 (984)
+++|
T Consensus 169 l~~n 172 (414)
T KOG0531|consen 169 LSYN 172 (414)
T ss_pred CCcc
Confidence 5544
No 129
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.81 E-value=0.00062 Score=80.22 Aligned_cols=196 Identities=15% Similarity=0.172 Sum_probs=111.4
Q ss_pred CcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHH
Q 001998 179 SEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAI 258 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 258 (984)
.+++|.+..++.|..++.... -...+.++|..|+||||+|+.+++..- ....+.. ...........+.+
T Consensus 16 ~~liGq~~i~~~L~~~l~~~r------l~~a~Lf~Gp~G~GKttlA~~lAk~L~-c~~~~~~----~~~~Cg~C~~C~~i 84 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNR------IAPAYLFTGPRGTGKTSSARILAKSLN-CLNSDKP----TPEPCGKCELCRAI 84 (620)
T ss_pred hhccChHHHHHHHHHHHHcCC------CCceEEEECCCCCChHHHHHHHHHHhc-CCCcCCC----CCCCCcccHHHHHH
Confidence 478999999999999886532 234678999999999999999887421 1111000 00111222222222
Q ss_pred HHHhcC-----C---CCCcccHHHHHHHHHH-HhCCCceEEEEEcCCCCCcCChhhHHHhhcCCCCCcEEEEEccc-hHH
Q 001998 259 IEELEG-----S---ATDLHELNSLLRRIGA-NIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILLTTRK-ETV 328 (984)
Q Consensus 259 ~~~l~~-----~---~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~-~~v 328 (984)
...... . ......+.++...+.. -..+++-++|+|++.......++.|...+........+|++|.+ ..+
T Consensus 85 ~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~l 164 (620)
T PRK14948 85 AAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRV 164 (620)
T ss_pred hcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhh
Confidence 221110 0 0111122222222221 11345568999999765555677777777665455666655544 333
Q ss_pred Hhhc-CCCCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHH
Q 001998 329 ARMM-ESTDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLPLAAKTI 389 (984)
Q Consensus 329 ~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~ 389 (984)
...+ .....+++..++.++....+.+.+...+.... .+....|++.++|.+..+..+
T Consensus 165 lpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is----~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 165 LPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIE----PEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred hHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 3322 33567888999999988887776543222111 244667999999987655443
No 130
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.81 E-value=0.00096 Score=67.21 Aligned_cols=127 Identities=19% Similarity=0.212 Sum_probs=76.1
Q ss_pred cccCCcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHH
Q 001998 175 LIDVSEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSV 254 (984)
Q Consensus 175 ~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~ 254 (984)
.+.-++++|.|.+++.|++-...--. +....-+.++|..|.|||++++++.+...-++ =..+-|
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~---G~pannvLL~G~rGtGKSSlVkall~~y~~~G--LRlIev----------- 86 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQ---GLPANNVLLWGARGTGKSSLVKALLNEYADQG--LRLIEV----------- 86 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHc---CCCCcceEEecCCCCCHHHHHHHHHHHHhhcC--ceEEEE-----------
Confidence 34556899999999998875443221 12344566899999999999999987321111 111112
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCceEEEEEcCCC-CCcCChhhHHHhhcCC---CCCc-EEEEEccchHHH
Q 001998 255 AKAIIEELEGSATDLHELNSLLRRIGANIAGQKFFMVLDNLWT-DDYRKWEPFRNCLMNG---LRGS-KILLTTRKETVA 329 (984)
Q Consensus 255 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~-~~~~~~~~l~~~l~~~---~~gs-~iiiTtr~~~v~ 329 (984)
...+..++..+.+.++. ...||+|++||+.= ++......+++.+..+ .+.. .|..||..++..
T Consensus 87 ----------~k~~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv 154 (249)
T PF05673_consen 87 ----------SKEDLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLV 154 (249)
T ss_pred ----------CHHHhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhcc
Confidence 22233445555555553 46799999999843 2334566777776543 2333 444555545543
No 131
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.80 E-value=0.00044 Score=78.62 Aligned_cols=183 Identities=15% Similarity=0.168 Sum_probs=107.2
Q ss_pred CCcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccc---------------------cC
Q 001998 178 VSEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVI---------------------NN 236 (984)
Q Consensus 178 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---------------------~~ 236 (984)
-.+++|.+..++.+.+.+.... -...+.++|..|+||||+|+.+.+...-. .+
T Consensus 16 ~~diiGq~~~v~~L~~~i~~~~------i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~ 89 (451)
T PRK06305 16 FSEILGQDAVVAVLKNALRFNR------AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTS 89 (451)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC------CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCC
Confidence 3578999999999999886432 24567889999999999998886521000 01
Q ss_pred CCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHH-HhCCCceEEEEEcCCCCCcCChhhHHHhhcCCCC
Q 001998 237 FEIRVWVCVSDPFDEFSVAKAIIEELEGSATDLHELNSLLRRIGA-NIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLR 315 (984)
Q Consensus 237 F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~ 315 (984)
++ .+++.-.... ...++.++.+.+.- ...+++-++|+|++........+.+...+.....
T Consensus 90 ~d-~~~i~g~~~~------------------gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~ 150 (451)
T PRK06305 90 LD-VLEIDGASHR------------------GIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQ 150 (451)
T ss_pred Cc-eEEeeccccC------------------CHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCC
Confidence 11 1111111111 11122222222211 1235667899999855443445556666666555
Q ss_pred CcEEEEEccc-hHHHhh-cCCCCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCChH-HHHHH
Q 001998 316 GSKILLTTRK-ETVARM-MESTDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLPL-AAKTI 389 (984)
Q Consensus 316 gs~iiiTtr~-~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlPL-ai~~~ 389 (984)
...+|++|.+ ..+... ......+++.+++.++....+...+-..+...+ .+.++.|++.++|.+- |+..+
T Consensus 151 ~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i~----~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 151 HVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIETS----REALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred CceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 6677766643 333222 223568899999999998888876543222122 3456679999999664 44443
No 132
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.73 E-value=0.00023 Score=72.77 Aligned_cols=185 Identities=16% Similarity=0.165 Sum_probs=117.1
Q ss_pred CCcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEE-EEecCCCCHHHHHH
Q 001998 178 VSEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVW-VCVSDPFDEFSVAK 256 (984)
Q Consensus 178 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~w-v~~s~~~~~~~~~~ 256 (984)
-.+++|-+..+.-+.+.+.. . ...+...+|++|.|||+-|..+++.---..-|.+++- .++|...... +.+
T Consensus 35 ~de~~gQe~vV~~L~~a~~~-~------~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-vvr 106 (346)
T KOG0989|consen 35 FDELAGQEHVVQVLKNALLR-R------ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-VVR 106 (346)
T ss_pred HHhhcchHHHHHHHHHHHhh-c------CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-chh
Confidence 35789999999999998865 2 4678889999999999999887763222345555432 3444332222 110
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHHHh--CCCc-eEEEEEcCCCCCcCChhhHHHhhcCCCCCcEEEEEccchH-HHh-h
Q 001998 257 AIIEELEGSATDLHELNSLLRRIGANI--AGQK-FFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILLTTRKET-VAR-M 331 (984)
Q Consensus 257 ~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~kr-~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~-v~~-~ 331 (984)
+ ...+...+.....+.. .-++ -.||||++.+...+.|..++..+.+....++.|+.+..-. +-. .
T Consensus 107 ~----------Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi 176 (346)
T KOG0989|consen 107 E----------KIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPL 176 (346)
T ss_pred h----------hhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHH
Confidence 0 1111121111111000 1233 3788999988888999999999888777778666655432 111 1
Q ss_pred cCCCCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCChH
Q 001998 332 MESTDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLPL 384 (984)
Q Consensus 332 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlPL 384 (984)
......|..++|.+++...-+...+-..+...+. +..+.|++.++|---
T Consensus 177 ~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~----~al~~I~~~S~GdLR 225 (346)
T KOG0989|consen 177 VSRCQKFRFKKLKDEDIVDRLEKIASKEGVDIDD----DALKLIAKISDGDLR 225 (346)
T ss_pred HhhHHHhcCCCcchHHHHHHHHHHHHHhCCCCCH----HHHHHHHHHcCCcHH
Confidence 1234578899999999999998888666554443 344558889988543
No 133
>CHL00181 cbbX CbbX; Provisional
Probab=97.73 E-value=0.0013 Score=70.11 Aligned_cols=135 Identities=13% Similarity=0.119 Sum_probs=72.7
Q ss_pred EEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCc
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAIIEELEGSATDLHELNSLLRRIGANIAGQK 287 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 287 (984)
..+.++|.+|+||||+|+.+++.....+.-...-|+.++ ..+ +.....+... ......+.+. . .
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~----~~~----l~~~~~g~~~-----~~~~~~l~~a-~--g 123 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVT----RDD----LVGQYIGHTA-----PKTKEVLKKA-M--G 123 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEec----HHH----HHHHHhccch-----HHHHHHHHHc-c--C
Confidence 347889999999999999997631111111111244444 112 2222222110 1112223222 2 2
Q ss_pred eEEEEEcCCCC----CcCCh-----hhHHHhhcCCCCCcEEEEEccchHHHhhc--------CCCCeEeCCCCChHhHHH
Q 001998 288 FFMVLDNLWTD----DYRKW-----EPFRNCLMNGLRGSKILLTTRKETVARMM--------ESTDIVYVQGLSEPECWS 350 (984)
Q Consensus 288 ~LlVlDdvw~~----~~~~~-----~~l~~~l~~~~~gs~iiiTtr~~~v~~~~--------~~~~~~~l~~L~~~~~~~ 350 (984)
-+|++|++..- ....| ..+...+.+...+.+||+++......... .-...+.+++++.+|..+
T Consensus 124 gVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~ 203 (287)
T CHL00181 124 GVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQ 203 (287)
T ss_pred CEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHH
Confidence 48999999541 01112 22334444444566777887654432211 113478899999999999
Q ss_pred HHHHHhcC
Q 001998 351 LFRRFAFS 358 (984)
Q Consensus 351 lf~~~~~~ 358 (984)
++...+..
T Consensus 204 I~~~~l~~ 211 (287)
T CHL00181 204 IAKIMLEE 211 (287)
T ss_pred HHHHHHHH
Confidence 98887643
No 134
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.72 E-value=0.0014 Score=74.36 Aligned_cols=157 Identities=15% Similarity=0.179 Sum_probs=92.2
Q ss_pred eEEEEEEecCcchHHHHHHHHhcCcccccCC--CeEEEEEecCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhC
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYNDNDVINNF--EIRVWVCVSDPFDEFSVAKAIIEELEGSATDLHELNSLLRRIGANIA 284 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 284 (984)
...+.|+|..|+|||+|++.+++. +.... ..+++++ ..++...+...+... ..+... +.+.
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~--l~~~~~~~~v~yi~------~~~~~~~~~~~~~~~-----~~~~~~----~~~~ 198 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNE--ILENNPNAKVVYVS------SEKFTNDFVNALRNN-----KMEEFK----EKYR 198 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HHHhCCCCcEEEEE------HHHHHHHHHHHHHcC-----CHHHHH----HHHH
Confidence 346889999999999999999984 33332 2455664 334455555555421 222222 2232
Q ss_pred CCceEEEEEcCCCCCcCCh--hhHHHhhcC-CCCCcEEEEEccch-H--------HHhhcCCCCeEeCCCCChHhHHHHH
Q 001998 285 GQKFFMVLDNLWTDDYRKW--EPFRNCLMN-GLRGSKILLTTRKE-T--------VARMMESTDIVYVQGLSEPECWSLF 352 (984)
Q Consensus 285 ~kr~LlVlDdvw~~~~~~~--~~l~~~l~~-~~~gs~iiiTtr~~-~--------v~~~~~~~~~~~l~~L~~~~~~~lf 352 (984)
+ .-+|||||+.......+ +.+...+.. ...|..||+|+... . +...+.....+.+++.+.++-..++
T Consensus 199 ~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il 277 (405)
T TIGR00362 199 S-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAIL 277 (405)
T ss_pred h-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHH
Confidence 2 34899999965322212 223333322 12345688888642 1 2222333457899999999999999
Q ss_pred HHHhcCCCCCCCchhHHHHHHHHHHhcCCChHH
Q 001998 353 RRFAFSGRTPLECDQLEEIGRGIVRKCKGLPLA 385 (984)
Q Consensus 353 ~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlPLa 385 (984)
.+.+........ +++...|++.+.|.+-.
T Consensus 278 ~~~~~~~~~~l~----~e~l~~ia~~~~~~~r~ 306 (405)
T TIGR00362 278 QKKAEEEGLELP----DEVLEFIAKNIRSNVRE 306 (405)
T ss_pred HHHHHHcCCCCC----HHHHHHHHHhcCCCHHH
Confidence 988754332222 45566688888876654
No 135
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.71 E-value=0.00039 Score=76.32 Aligned_cols=150 Identities=13% Similarity=0.175 Sum_probs=86.5
Q ss_pred cCCcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHH
Q 001998 177 DVSEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAK 256 (984)
Q Consensus 177 ~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 256 (984)
.-.+++|.+...+.+..++.... -..++.++|..|+||||+|+.+++. .... ...++.+. .. .+..+
T Consensus 19 ~~~~~~~~~~~~~~l~~~~~~~~------~~~~lll~G~~G~GKT~la~~l~~~--~~~~---~~~i~~~~-~~-~~~i~ 85 (316)
T PHA02544 19 TIDECILPAADKETFKSIVKKGR------IPNMLLHSPSPGTGKTTVAKALCNE--VGAE---VLFVNGSD-CR-IDFVR 85 (316)
T ss_pred cHHHhcCcHHHHHHHHHHHhcCC------CCeEEEeeCcCCCCHHHHHHHHHHH--hCcc---ceEeccCc-cc-HHHHH
Confidence 34578999999999999886422 3567888999999999999999873 2222 23344433 11 11111
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHHHhCCCceEEEEEcCCCC-CcCChhhHHHhhcCCCCCcEEEEEccchH-HHhhc-C
Q 001998 257 AIIEELEGSATDLHELNSLLRRIGANIAGQKFFMVLDNLWTD-DYRKWEPFRNCLMNGLRGSKILLTTRKET-VARMM-E 333 (984)
Q Consensus 257 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~~~gs~iiiTtr~~~-v~~~~-~ 333 (984)
+.+..+.. .. .+.+.+-+||+||+... ..+....+...+.....++++|+||.... +...+ .
T Consensus 86 ~~l~~~~~-------------~~--~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~s 150 (316)
T PHA02544 86 NRLTRFAS-------------TV--SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRS 150 (316)
T ss_pred HHHHHHHH-------------hh--cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHh
Confidence 21111100 00 01234558999999644 22222335544555556778999987543 11111 2
Q ss_pred CCCeEeCCCCChHhHHHHHHH
Q 001998 334 STDIVYVQGLSEPECWSLFRR 354 (984)
Q Consensus 334 ~~~~~~l~~L~~~~~~~lf~~ 354 (984)
....+.+...+.++..+++..
T Consensus 151 R~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 151 RCRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred hceEEEeCCCCHHHHHHHHHH
Confidence 234667777777776665543
No 136
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.69 E-value=0.0007 Score=79.57 Aligned_cols=197 Identities=15% Similarity=0.207 Sum_probs=109.8
Q ss_pred CcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHH
Q 001998 179 SEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAI 258 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 258 (984)
.+++|.+..++.|...+.... -...+.++|..|+||||+|+.+.+..--....+ ..+++.....+.|
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~------~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~-------~~~c~~c~~c~~i 82 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGR------VAHAFLFTGARGVGKTSTARILAKALNCEQGLT-------AEPCNVCPPCVEI 82 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCC------CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCC-------CCCCCccHHHHHH
Confidence 579999999999999886432 345678999999999999988876311000000 0001111111111
Q ss_pred HHH-------hcCC-CCCcccHHHHHHHHHHH-hCCCceEEEEEcCCCCCcCChhhHHHhhcCCCCCcEEEEEc-cchHH
Q 001998 259 IEE-------LEGS-ATDLHELNSLLRRIGAN-IAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILLTT-RKETV 328 (984)
Q Consensus 259 ~~~-------l~~~-~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTt-r~~~v 328 (984)
... +.+. .....++.++...+... ..+++-++|+|++..-+....+.|...+......+.+|++| ....+
T Consensus 83 ~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl 162 (576)
T PRK14965 83 TEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKV 162 (576)
T ss_pred hcCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhh
Confidence 100 0000 01111222333222211 13455589999996655555667777776655566666555 44444
Q ss_pred Hhhc-CCCCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCCh-HHHHHHHHh
Q 001998 329 ARMM-ESTDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLP-LAAKTIGSL 392 (984)
Q Consensus 329 ~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlP-Lai~~~~~~ 392 (984)
...+ .....+++.+++.++....+...+-..+...+ .+....|++.++|.. .|+..+-..
T Consensus 163 ~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~----~~al~~la~~a~G~lr~al~~Ldql 224 (576)
T PRK14965 163 PITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISIS----DAALALVARKGDGSMRDSLSTLDQV 224 (576)
T ss_pred hHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4332 33568889999999988887765533322222 344556889998865 444444333
No 137
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.66 E-value=0.00045 Score=77.36 Aligned_cols=181 Identities=14% Similarity=0.138 Sum_probs=97.8
Q ss_pred cCCcccccHHHHHHHHHHHhcCCCC------CCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCC
Q 001998 177 DVSEVRGRDEEMRTLKSMLLCQGSD------QQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFD 250 (984)
Q Consensus 177 ~~~~~~Gr~~~~~~l~~~L~~~~~~------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~ 250 (984)
...++.|+++.++++.+.+..+-.. .+-...+-|.++|.+|.|||++|+.+++. .... |+.++.
T Consensus 129 ~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~--~~~~-----~i~v~~--- 198 (389)
T PRK03992 129 TYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNAT-----FIRVVG--- 198 (389)
T ss_pred CHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH--hCCC-----EEEeeh---
Confidence 3457899999999998876431100 00123456889999999999999999983 3322 222221
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCceEEEEEcCCCC-----------CcCChhhHHHhhcC-----CC
Q 001998 251 EFSVAKAIIEELEGSATDLHELNSLLRRIGANIAGQKFFMVLDNLWTD-----------DYRKWEPFRNCLMN-----GL 314 (984)
Q Consensus 251 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~-----------~~~~~~~l~~~l~~-----~~ 314 (984)
.++ .....+. ....+...+...-...+.+|+|||+..- +......+...+.. ..
T Consensus 199 -~~l----~~~~~g~-----~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~ 268 (389)
T PRK03992 199 -SEL----VQKFIGE-----GARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPR 268 (389)
T ss_pred -HHH----hHhhccc-----hHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCC
Confidence 111 1111111 0111122222222356789999998541 00111223333321 12
Q ss_pred CCcEEEEEccchHHHh-hc-C---CCCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCC
Q 001998 315 RGSKILLTTRKETVAR-MM-E---STDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGL 382 (984)
Q Consensus 315 ~gs~iiiTtr~~~v~~-~~-~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~Gl 382 (984)
.+..||.||...+... .+ . -...+++.+.+.++-.++|..+.....- ...-.+.. +++.+.|.
T Consensus 269 ~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~-~~~~~~~~----la~~t~g~ 336 (389)
T PRK03992 269 GNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNL-ADDVDLEE----LAELTEGA 336 (389)
T ss_pred CCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCC-CCcCCHHH----HHHHcCCC
Confidence 3567887887643222 11 1 1357889999999999999887643322 11123433 55666554
No 138
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.66 E-value=0.00095 Score=75.64 Aligned_cols=153 Identities=14% Similarity=0.119 Sum_probs=87.3
Q ss_pred eEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCC
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAIIEELEGSATDLHELNSLLRRIGANIAGQ 286 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 286 (984)
..-+.|+|..|+|||+|++.+++. +......+++++ ...+...+...+... .. ..+++.+. +
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~--l~~~~~~v~yi~------~~~f~~~~~~~l~~~-----~~----~~f~~~~~-~ 202 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHA--LRESGGKILYVR------SELFTEHLVSAIRSG-----EM----QRFRQFYR-N 202 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHH--HHHcCCCEEEee------HHHHHHHHHHHHhcc-----hH----HHHHHHcc-c
Confidence 346789999999999999999984 332223445553 334555555555321 11 22333333 3
Q ss_pred ceEEEEEcCCCCCcCCh--hhHHHhhcC-CCCCcEEEEEccch---------HHHhhcCCCCeEeCCCCChHhHHHHHHH
Q 001998 287 KFFMVLDNLWTDDYRKW--EPFRNCLMN-GLRGSKILLTTRKE---------TVARMMESTDIVYVQGLSEPECWSLFRR 354 (984)
Q Consensus 287 r~LlVlDdvw~~~~~~~--~~l~~~l~~-~~~gs~iiiTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~ 354 (984)
.-+|++||+.......| +.+...+.. ...|..||+||... .+...+.....+.+.+++.++-..++.+
T Consensus 203 ~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~ 282 (445)
T PRK12422 203 VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLER 282 (445)
T ss_pred CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHH
Confidence 45888999865322222 223333221 12355788888642 1223344456888999999999999988
Q ss_pred HhcCCCCCCCchhHHHHHHHHHHhcCC
Q 001998 355 FAFSGRTPLECDQLEEIGRGIVRKCKG 381 (984)
Q Consensus 355 ~~~~~~~~~~~~~l~~~~~~i~~~~~G 381 (984)
++-....... .++..-|++.+.|
T Consensus 283 k~~~~~~~l~----~evl~~la~~~~~ 305 (445)
T PRK12422 283 KAEALSIRIE----ETALDFLIEALSS 305 (445)
T ss_pred HHHHcCCCCC----HHHHHHHHHhcCC
Confidence 7744322111 3344445555553
No 139
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.66 E-value=0.0011 Score=70.69 Aligned_cols=133 Identities=15% Similarity=0.100 Sum_probs=71.6
Q ss_pred EEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCce
Q 001998 209 IFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAIIEELEGSATDLHELNSLLRRIGANIAGQKF 288 (984)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~ 288 (984)
-+.++|.+|.||||+|+.+++-....+.....-|+.++. . +++..+.+... ......+.+. ..-
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~----~l~~~~~g~~~-----~~~~~~~~~a---~~g 123 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----D----DLVGQYIGHTA-----PKTKEILKRA---MGG 123 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----H----HHhHhhcccch-----HHHHHHHHHc---cCc
Confidence 578999999999999977765211111111112444442 1 22222222111 1122223322 235
Q ss_pred EEEEEcCCCC----C-----cCChhhHHHhhcCCCCCcEEEEEccchHHHhhc--C------CCCeEeCCCCChHhHHHH
Q 001998 289 FMVLDNLWTD----D-----YRKWEPFRNCLMNGLRGSKILLTTRKETVARMM--E------STDIVYVQGLSEPECWSL 351 (984)
Q Consensus 289 LlVlDdvw~~----~-----~~~~~~l~~~l~~~~~gs~iiiTtr~~~v~~~~--~------~~~~~~l~~L~~~~~~~l 351 (984)
+|+||++..- + .+.++.+...+.....+.+||.++......... . -...+++++++.+|..++
T Consensus 124 vL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I 203 (284)
T TIGR02880 124 VLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVI 203 (284)
T ss_pred EEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHH
Confidence 8899998521 1 112233445555555566777777543322211 1 135788999999999999
Q ss_pred HHHHhc
Q 001998 352 FRRFAF 357 (984)
Q Consensus 352 f~~~~~ 357 (984)
+....-
T Consensus 204 ~~~~l~ 209 (284)
T TIGR02880 204 AGLMLK 209 (284)
T ss_pred HHHHHH
Confidence 887763
No 140
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.66 E-value=8.6e-06 Score=92.71 Aligned_cols=103 Identities=29% Similarity=0.322 Sum_probs=80.8
Q ss_pred ccccee-cCCCCccccCcccccccCccceEEecCCCccccchhhccCCcccEEecccccccccccccccCCCCCCeEEec
Q 001998 591 LTYGED-DGGENTVHDIPREIEKLIHLRSLRLAGLKIEELPETCCKLFNLQTLDINECYRLKRLPQGVGSLVNLRHLVVS 669 (984)
Q Consensus 591 l~~Lrv-~l~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~ 669 (984)
+..+.. .+..|.+.++-..++.+.+|.+|++.+|.|..+...+..+++|++|++++|. ++.+.. +..++.|+.|++.
T Consensus 71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~~-l~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNK-ITKLEG-LSTLTLLKELNLS 148 (414)
T ss_pred hHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccc-cccccc-hhhccchhhheec
Confidence 344444 5666777776667889999999999999999888778899999999999998 887765 7888889999999
Q ss_pred cCCCcccCCccCCCCCCCCcCCceEecC
Q 001998 670 LNGDLDYLPKGVERLTSLRTLREFVVSS 697 (984)
Q Consensus 670 ~~~~l~~~p~~i~~l~~L~~L~~~~~~~ 697 (984)
+| .+..++ ++..+++|+.+++..+..
T Consensus 149 ~N-~i~~~~-~~~~l~~L~~l~l~~n~i 174 (414)
T KOG0531|consen 149 GN-LISDIS-GLESLKSLKLLDLSYNRI 174 (414)
T ss_pred cC-cchhcc-CCccchhhhcccCCcchh
Confidence 98 555553 566678888887765543
No 141
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.65 E-value=0.0014 Score=76.44 Aligned_cols=194 Identities=16% Similarity=0.218 Sum_probs=111.8
Q ss_pred CcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHH
Q 001998 179 SEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAI 258 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 258 (984)
.+++|-+..++.+..++.... -...+.++|..|+||||+|+.+.+..--...... .+.......+.|
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~------i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~-------~pC~~C~~C~~i 82 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNK------IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP-------MPCGECSSCKSI 82 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCC------CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC-------CCCccchHHHHH
Confidence 478999999999999986432 3567889999999999999998874211100000 000000011111
Q ss_pred HHH-------hcCCC-CCcccHHHHHHHHHH-HhCCCceEEEEEcCCCCCcCChhhHHHhhcCCCCCcEEEEEccc-hHH
Q 001998 259 IEE-------LEGSA-TDLHELNSLLRRIGA-NIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILLTTRK-ETV 328 (984)
Q Consensus 259 ~~~-------l~~~~-~~~~~~~~~~~~l~~-~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~-~~v 328 (984)
... +.+.. ....++.++...+.. -..+++-++|+|++..-+...++.+...+......+.+|++|.. ..+
T Consensus 83 ~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL 162 (563)
T PRK06647 83 DNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKL 162 (563)
T ss_pred HcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHh
Confidence 110 00000 111122222222221 12356668999999665555667777777665566677666644 333
Q ss_pred Hhhc-CCCCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHH
Q 001998 329 ARMM-ESTDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLPLAAKTI 389 (984)
Q Consensus 329 ~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~ 389 (984)
...+ .....+++.+++.++..+.+.+.+...+.... .+.+..|++.++|.+-.+..+
T Consensus 163 ~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~id----~eAl~lLa~~s~GdlR~alsl 220 (563)
T PRK06647 163 PATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYE----DEALKWIAYKSTGSVRDAYTL 220 (563)
T ss_pred HHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 3322 33557899999999998888877644332222 345566889999987544333
No 142
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.61 E-value=0.00054 Score=69.29 Aligned_cols=179 Identities=20% Similarity=0.202 Sum_probs=101.2
Q ss_pred CcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHH
Q 001998 179 SEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAI 258 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 258 (984)
.+|+|.++-++++.-++..... .++.+--+.++|++|.||||||.-+++ +....+... -.....-..-+..|
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~--r~e~lDHvLl~GPPGlGKTTLA~IIA~--Emgvn~k~t----sGp~leK~gDlaai 97 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKK--RGEALDHVLLFGPPGLGKTTLAHIIAN--ELGVNLKIT----SGPALEKPGDLAAI 97 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHh--cCCCcCeEEeeCCCCCcHHHHHHHHHH--HhcCCeEec----ccccccChhhHHHH
Confidence 5899999999998877764332 234567789999999999999999998 444443211 11111111122222
Q ss_pred HHHhcCCCCCcccHHHHHHHHHHHhCCCceEEEEEcCCCCCcCChhhHHHhhcC--------CCCCcE-----------E
Q 001998 259 IEELEGSATDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDYRKWEPFRNCLMN--------GLRGSK-----------I 319 (984)
Q Consensus 259 ~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~--------~~~gs~-----------i 319 (984)
+..+. +.=.+++|.+..-....-+-+.+++.+ .++++| |
T Consensus 98 Lt~Le----------------------~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLI 155 (332)
T COG2255 98 LTNLE----------------------EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLI 155 (332)
T ss_pred HhcCC----------------------cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEe
Confidence 22222 122344455533221111111111111 123333 3
Q ss_pred EEEccchHHHhhcCC--CCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHHHH
Q 001998 320 LLTTRKETVARMMES--TDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLPLAAKTIGS 391 (984)
Q Consensus 320 iiTtr~~~v~~~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~ 391 (984)
=-|||.-.+.+-+.. .-+.+++.-+.+|-.++..+.+..-.... -++-+.+|+++..|-|--+.-+-+
T Consensus 156 GATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i----~~~~a~eIA~rSRGTPRIAnRLLr 225 (332)
T COG2255 156 GATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEI----DEEAALEIARRSRGTPRIANRLLR 225 (332)
T ss_pred eeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCC----ChHHHHHHHHhccCCcHHHHHHHH
Confidence 348886554433322 23678899999999999988874333222 245677899999999965444433
No 143
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=3.1e-06 Score=85.11 Aligned_cols=162 Identities=18% Similarity=0.179 Sum_probs=108.3
Q ss_pred cccCCCCCCeEEEEEcCCcccccCcCchhhccHHHHhhcCCCCCCCCeEEEeecCCCCCCCc--hhhcCCCCcEEEEeCc
Q 001998 740 DLEKKKNIVGLELRFDKEEAATEGINEENEINHQAISEALRPPPDLEALEIMHYKGQTAFPS--WIVSLNKLKKLKLSSC 817 (984)
Q Consensus 740 ~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~lp~--~l~~l~~L~~L~L~~~ 817 (984)
.++.|++|+.|+|.++... +.+...+....+|+.|+|++|.+.+.... .+.+|+.|.+|+|++|
T Consensus 205 iLs~C~kLk~lSlEg~~Ld--------------D~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc 270 (419)
T KOG2120|consen 205 ILSQCSKLKNLSLEGLRLD--------------DPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWC 270 (419)
T ss_pred HHHHHHhhhhccccccccC--------------cHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHh
Confidence 3566777888887776553 23555666778999999999987663322 2458999999999999
Q ss_pred CCCCcC-CC--CCCCCCcceeeeccccCceEecceecCccCCCCCCCCCCccCcccccccccccccCCCCcccccCCCCc
Q 001998 818 CKCEIM-PP--LGALPSLEILQIQRMESVKRVGVEFLGIESFNDYAPSSSLSLTAFPKLKELTLFHLDGCEEWDFGKEDV 894 (984)
Q Consensus 818 ~~~~~l-~~--l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~ 894 (984)
...... .. -.-=++|+.|+|+++... +...- .......+|+|..|+++++..+..-.+. .+
T Consensus 271 ~l~~~~Vtv~V~hise~l~~LNlsG~rrn--l~~sh------------~~tL~~rcp~l~~LDLSD~v~l~~~~~~--~~ 334 (419)
T KOG2120|consen 271 FLFTEKVTVAVAHISETLTQLNLSGYRRN--LQKSH------------LSTLVRRCPNLVHLDLSDSVMLKNDCFQ--EF 334 (419)
T ss_pred hccchhhhHHHhhhchhhhhhhhhhhHhh--hhhhH------------HHHHHHhCCceeeeccccccccCchHHH--HH
Confidence 765421 11 111368899999987522 11100 0011346899999999998776653221 14
Q ss_pred ccCCcccEEeeecCcCCCCCCc---CCCCCCCcCeEEeccCc
Q 001998 895 IIMPQLCYLDIRFCRKLKSLPD---QLLQSSTLEKLRIIRAP 933 (984)
Q Consensus 895 ~~l~~L~~L~l~~c~~l~~lp~---~~~~l~~L~~L~i~~c~ 933 (984)
-.|+.|++|.++.|..+ +|. .+.+.|+|.+|++.||-
T Consensus 335 ~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 335 FKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred HhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEecccc
Confidence 46899999999999743 343 34567899999999974
No 144
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.58 E-value=0.0012 Score=74.97 Aligned_cols=156 Identities=13% Similarity=0.111 Sum_probs=92.5
Q ss_pred EEEEEEecCcchHHHHHHHHhcCcccccC-CC-eEEEEEecCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCC
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYNDNDVINN-FE-IRVWVCVSDPFDEFSVAKAIIEELEGSATDLHELNSLLRRIGANIAG 285 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~-~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 285 (984)
.-+.|+|..|+|||+|++.+++. +... .. .++|++. .+++.++...+... ..+. +.+.+..
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~--l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~-----~~~~----f~~~~~~ 193 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITS------EKFLNDLVDSMKEG-----KLNE----FREKYRK 193 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHH--HHHhCCCCeEEEEEH------HHHHHHHHHHHhcc-----cHHH----HHHHHHh
Confidence 34899999999999999999984 3333 23 4566643 45666666665421 1222 2233333
Q ss_pred CceEEEEEcCCCCC-cCCh-hhHHHhhcC-CCCCcEEEEEcc-chH--------HHhhcCCCCeEeCCCCChHhHHHHHH
Q 001998 286 QKFFMVLDNLWTDD-YRKW-EPFRNCLMN-GLRGSKILLTTR-KET--------VARMMESTDIVYVQGLSEPECWSLFR 353 (984)
Q Consensus 286 kr~LlVlDdvw~~~-~~~~-~~l~~~l~~-~~~gs~iiiTtr-~~~--------v~~~~~~~~~~~l~~L~~~~~~~lf~ 353 (984)
+.-+|++||+.... ...+ ..+...+.. ...|..||+||. ... +...+.....+.+++.+.+.-..++.
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~ 273 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIAR 273 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHH
Confidence 45689999996421 1112 223333322 123457888885 322 22223445588899999999999998
Q ss_pred HHhcCCCCCCCchhHHHHHHHHHHhcCCChH
Q 001998 354 RFAFSGRTPLECDQLEEIGRGIVRKCKGLPL 384 (984)
Q Consensus 354 ~~~~~~~~~~~~~~l~~~~~~i~~~~~GlPL 384 (984)
+.+........ .++..-|++.+.|..-
T Consensus 274 ~~~~~~~~~l~----~ev~~~Ia~~~~~~~R 300 (440)
T PRK14088 274 KMLEIEHGELP----EEVLNFVAENVDDNLR 300 (440)
T ss_pred HHHHhcCCCCC----HHHHHHHHhccccCHH
Confidence 88753222121 4556667777776543
No 145
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.57 E-value=4.7e-06 Score=93.44 Aligned_cols=96 Identities=26% Similarity=0.252 Sum_probs=62.1
Q ss_pred cCCCCccccCcccccccCccceEEecCCCccccchhhccCCcccEEecccccccccccc-cccCCCCCCeEEeccCCCcc
Q 001998 597 DGGENTVHDIPREIEKLIHLRSLRLAGLKIEELPETCCKLFNLQTLDINECYRLKRLPQ-GVGSLVNLRHLVVSLNGDLD 675 (984)
Q Consensus 597 ~l~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~-~i~~L~~L~~L~l~~~~~l~ 675 (984)
++++|.+..+-.++.-+++|+.|||++|++...- .+..|++|.+|||+.|. +..+|. +...++ |+.|++.+| .+.
T Consensus 170 ~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~-L~~L~lrnN-~l~ 245 (1096)
T KOG1859|consen 170 SFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGCK-LQLLNLRNN-ALT 245 (1096)
T ss_pred hcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccch-hccccccchhhhh-heeeeeccc-HHH
Confidence 6666666666666777777777777777776664 66677777777777776 666664 122333 777777666 344
Q ss_pred cCCccCCCCCCCCcCCceEecC
Q 001998 676 YLPKGVERLTSLRTLREFVVSS 697 (984)
Q Consensus 676 ~~p~~i~~l~~L~~L~~~~~~~ 697 (984)
.+ .++.+|.+|+.|++..+-.
T Consensus 246 tL-~gie~LksL~~LDlsyNll 266 (1096)
T KOG1859|consen 246 TL-RGIENLKSLYGLDLSYNLL 266 (1096)
T ss_pred hh-hhHHhhhhhhccchhHhhh
Confidence 43 4566777777777665543
No 146
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.56 E-value=0.0018 Score=69.97 Aligned_cols=197 Identities=13% Similarity=0.128 Sum_probs=112.0
Q ss_pred CcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCc---cc----------ccCCCeEEEEEe
Q 001998 179 SEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDN---DV----------INNFEIRVWVCV 245 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~---~~----------~~~F~~~~wv~~ 245 (984)
.+++|.+..++.+...+..+. -.....++|..|+||+++|..+.+.. .. ...+.-..|+.-
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r------l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p 77 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR------IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEP 77 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEec
Confidence 468999999999999886533 34688999999999999997665421 00 111222344421
Q ss_pred cCCCCHHHHHHHHHHHhc--CCCCCc---ccHHHHHHHHHHH-hCCCceEEEEEcCCCCCcCChhhHHHhhcCCCCCcEE
Q 001998 246 SDPFDEFSVAKAIIEELE--GSATDL---HELNSLLRRIGAN-IAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKI 319 (984)
Q Consensus 246 s~~~~~~~~~~~i~~~l~--~~~~~~---~~~~~~~~~l~~~-l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~i 319 (984)
....+...+-.+-++..+ ...... .++.++.+.+... ..+++-++|+|++...+......+...+-.-. .+.+
T Consensus 78 ~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~f 156 (314)
T PRK07399 78 TYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTL 156 (314)
T ss_pred cccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeE
Confidence 100000001011111111 011111 1222233222221 23566689999997666566777777776544 4455
Q ss_pred EEEccc-hHHHhhc-CCCCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHH
Q 001998 320 LLTTRK-ETVARMM-ESTDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLPLAAKTI 389 (984)
Q Consensus 320 iiTtr~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~ 389 (984)
|++|.+ ..+...+ .....+++.+++.++..+.+.+....... ......++..++|.|..+...
T Consensus 157 ILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~-------~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 157 ILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEIL-------NINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred EEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccc-------hhHHHHHHHHcCCCHHHHHHH
Confidence 555544 3443332 34679999999999999999886421110 111246889999999766543
No 147
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.54 E-value=0.0024 Score=74.75 Aligned_cols=193 Identities=16% Similarity=0.188 Sum_probs=108.1
Q ss_pred CCcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHH
Q 001998 178 VSEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKA 257 (984)
Q Consensus 178 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 257 (984)
-.+++|.+...+.+.+.+.... -.+.+.++|..|+||||+|+.+.+..--...- ...+.+.....+.
T Consensus 15 f~~viGq~~v~~~L~~~i~~~~------~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~-------~~~pC~~C~~C~~ 81 (559)
T PRK05563 15 FEDVVGQEHITKTLKNAIKQGK------ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPP-------DGEPCNECEICKA 81 (559)
T ss_pred HHhccCcHHHHHHHHHHHHcCC------CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCC-------CCCCCCccHHHHH
Confidence 3579999999999999987533 34567789999999999998886521000000 0011111111111
Q ss_pred HHHHh-------cC-CCCCcccHHHHHHHHHH-HhCCCceEEEEEcCCCCCcCChhhHHHhhcCCCCCcEEEEEc-cchH
Q 001998 258 IIEEL-------EG-SATDLHELNSLLRRIGA-NIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILLTT-RKET 327 (984)
Q Consensus 258 i~~~l-------~~-~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTt-r~~~ 327 (984)
|.... .. ......++.++...+.. -..+++-++|+|++..-....+..|...+........+|++| ....
T Consensus 82 i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~k 161 (559)
T PRK05563 82 ITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHK 161 (559)
T ss_pred HhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhh
Confidence 11110 00 00111122223222221 123556688999996554455666776665544455555544 4333
Q ss_pred HHhhc-CCCCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCChHHHH
Q 001998 328 VARMM-ESTDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLPLAAK 387 (984)
Q Consensus 328 v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~ 387 (984)
+...+ .....+.+.+++.++....+...+...+...+ .+....|++.++|-+..+.
T Consensus 162 i~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~----~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 162 IPATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYE----DEALRLIARAAEGGMRDAL 218 (559)
T ss_pred CcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHH
Confidence 33322 33567889999999998888776643332222 3445668888888775443
No 148
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.51 E-value=0.0012 Score=69.79 Aligned_cols=163 Identities=13% Similarity=0.099 Sum_probs=80.4
Q ss_pred cccccHHHHHHHHHHHhcC-------CCC-CCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCH
Q 001998 180 EVRGRDEEMRTLKSMLLCQ-------GSD-QQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDE 251 (984)
Q Consensus 180 ~~~Gr~~~~~~l~~~L~~~-------~~~-~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~ 251 (984)
.++|.+..++++.+..... ..+ ...+...-+.++|.+|+||||+|+.+++...-.+.-....++.++.
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~---- 82 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER---- 82 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH----
Confidence 5788888777765442211 000 0123455678999999999999999976311001111112232221
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCceEEEEEcCCCCCc--------CChhhHHHhhcCCCCCcEEEEEc
Q 001998 252 FSVAKAIIEELEGSATDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDY--------RKWEPFRNCLMNGLRGSKILLTT 323 (984)
Q Consensus 252 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~--------~~~~~l~~~l~~~~~gs~iiiTt 323 (984)
.++. ....+. ........+.+. . .-+|++|++..-.. +..+.+...+........+|+++
T Consensus 83 ~~l~----~~~~g~-----~~~~~~~~~~~a-~--~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~ 150 (261)
T TIGR02881 83 ADLV----GEYIGH-----TAQKTREVIKKA-L--GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAG 150 (261)
T ss_pred HHhh----hhhccc-----hHHHHHHHHHhc-c--CCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecC
Confidence 1111 111110 011122222222 2 24889999954210 11222333333333334556665
Q ss_pred cchHHHh------hc-CC-CCeEeCCCCChHhHHHHHHHHhcC
Q 001998 324 RKETVAR------MM-ES-TDIVYVQGLSEPECWSLFRRFAFS 358 (984)
Q Consensus 324 r~~~v~~------~~-~~-~~~~~l~~L~~~~~~~lf~~~~~~ 358 (984)
...+... .+ .. ...+.+++++.++..+++.+.+..
T Consensus 151 ~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~ 193 (261)
T TIGR02881 151 YSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKE 193 (261)
T ss_pred CcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHH
Confidence 4433211 11 11 246789999999999999877643
No 149
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.50 E-value=0.0025 Score=73.30 Aligned_cols=158 Identities=15% Similarity=0.128 Sum_probs=93.7
Q ss_pred eEEEEEEecCcchHHHHHHHHhcCcccccCC--CeEEEEEecCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhC
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYNDNDVINNF--EIRVWVCVSDPFDEFSVAKAIIEELEGSATDLHELNSLLRRIGANIA 284 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 284 (984)
..-+.|+|..|+|||+|++.+++. +...+ ..+++++. .++...+...+... ..+. +.+.++
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~v~yi~~------~~~~~~~~~~~~~~-----~~~~----~~~~~~ 210 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNY--ILEKNPNAKVVYVTS------EKFTNDFVNALRNN-----TMEE----FKEKYR 210 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEEEH------HHHHHHHHHHHHcC-----cHHH----HHHHHh
Confidence 345889999999999999999984 44443 23556643 34444455544321 1222 223333
Q ss_pred CCceEEEEEcCCCCCcCC-h-hhHHHhhcC-CCCCcEEEEEccchH---------HHhhcCCCCeEeCCCCChHhHHHHH
Q 001998 285 GQKFFMVLDNLWTDDYRK-W-EPFRNCLMN-GLRGSKILLTTRKET---------VARMMESTDIVYVQGLSEPECWSLF 352 (984)
Q Consensus 285 ~kr~LlVlDdvw~~~~~~-~-~~l~~~l~~-~~~gs~iiiTtr~~~---------v~~~~~~~~~~~l~~L~~~~~~~lf 352 (984)
+.-+|||||+....... + +.+...+.. ...|..||+||.... +...+.....+++++.+.++-.+++
T Consensus 211 -~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il 289 (450)
T PRK00149 211 -SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAIL 289 (450)
T ss_pred -cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHH
Confidence 34489999996432211 2 223332221 123456888886531 2333444568999999999999999
Q ss_pred HHHhcCCCCCCCchhHHHHHHHHHHhcCCChHHH
Q 001998 353 RRFAFSGRTPLECDQLEEIGRGIVRKCKGLPLAA 386 (984)
Q Consensus 353 ~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai 386 (984)
.+.+........ +++..-|++.+.|..-.+
T Consensus 290 ~~~~~~~~~~l~----~e~l~~ia~~~~~~~R~l 319 (450)
T PRK00149 290 KKKAEEEGIDLP----DEVLEFIAKNITSNVREL 319 (450)
T ss_pred HHHHHHcCCCCC----HHHHHHHHcCcCCCHHHH
Confidence 988754222111 455667888888876543
No 150
>PRK06620 hypothetical protein; Validated
Probab=97.49 E-value=0.0018 Score=65.93 Aligned_cols=132 Identities=11% Similarity=0.081 Sum_probs=77.5
Q ss_pred EEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCc
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAIIEELEGSATDLHELNSLLRRIGANIAGQK 287 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 287 (984)
+.+.|+|..|+|||+|++.+++... . .++. ..+.. + +.. ...
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~--~-----~~~~--~~~~~---------------------~-------~~~-~~~ 86 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN--A-----YIIK--DIFFN---------------------E-------EIL-EKY 86 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC--C-----EEcc--hhhhc---------------------h-------hHH-hcC
Confidence 5689999999999999999887431 1 1111 00000 0 011 123
Q ss_pred eEEEEEcCCCCCcCChh--hHHHhhcC-CCCCcEEEEEccchH-------HHhhcCCCCeEeCCCCChHhHHHHHHHHhc
Q 001998 288 FFMVLDNLWTDDYRKWE--PFRNCLMN-GLRGSKILLTTRKET-------VARMMESTDIVYVQGLSEPECWSLFRRFAF 357 (984)
Q Consensus 288 ~LlVlDdvw~~~~~~~~--~l~~~l~~-~~~gs~iiiTtr~~~-------v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~ 357 (984)
-++++||+. .|. .+...+.. ...|..||+|++... ..+.+...-+++++++++++-..++.+.+.
T Consensus 87 d~lliDdi~-----~~~~~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~ 161 (214)
T PRK06620 87 NAFIIEDIE-----NWQEPALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFS 161 (214)
T ss_pred CEEEEeccc-----cchHHHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHH
Confidence 578899994 232 23222221 134668999998532 333445556899999999998888877664
Q ss_pred CCCCCCCchhHHHHHHHHHHhcCCChHHH
Q 001998 358 SGRTPLECDQLEEIGRGIVRKCKGLPLAA 386 (984)
Q Consensus 358 ~~~~~~~~~~l~~~~~~i~~~~~GlPLai 386 (984)
..+- .. -+++.+-|++.+.|---.+
T Consensus 162 ~~~l-~l---~~ev~~~L~~~~~~d~r~l 186 (214)
T PRK06620 162 ISSV-TI---SRQIIDFLLVNLPREYSKI 186 (214)
T ss_pred HcCC-CC---CHHHHHHHHHHccCCHHHH
Confidence 2211 11 1455566777776654433
No 151
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.48 E-value=0.0015 Score=80.22 Aligned_cols=153 Identities=19% Similarity=0.228 Sum_probs=85.8
Q ss_pred CcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccC------CCeEEE-EEecCCCCH
Q 001998 179 SEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINN------FEIRVW-VCVSDPFDE 251 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~------F~~~~w-v~~s~~~~~ 251 (984)
..++||+.++++++..|.... ..-+.++|.+|+||||+|+.+.+. +... ....+| +.++.
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~-------~~n~lLvG~pGvGKTal~~~La~~--i~~~~v~~~l~~~~i~~l~l~~---- 253 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRR-------QNNPILTGEAGVGKTAVVEGLALR--IAAGDVPPALRNVRLLSLDLGL---- 253 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCC-------cCceeEECCCCCCHHHHHHHHHHH--HhhCCCCccccCCeEEEeehhh----
Confidence 478999999999999887543 223459999999999999998873 2211 123333 22211
Q ss_pred HHHHHHHHHHhcCCCCCcccHH-HHHHHHHHHh-CCCceEEEEEcCCCCC-------cCChh-hHHHhhcCCCCCcEEEE
Q 001998 252 FSVAKAIIEELEGSATDLHELN-SLLRRIGANI-AGQKFFMVLDNLWTDD-------YRKWE-PFRNCLMNGLRGSKILL 321 (984)
Q Consensus 252 ~~~~~~i~~~l~~~~~~~~~~~-~~~~~l~~~l-~~kr~LlVlDdvw~~~-------~~~~~-~l~~~l~~~~~gs~iii 321 (984)
+ ..+. ....+.+ .+...+.+.- .+++.+|++|++..-. ..+-. .+.+.+..+ .-++|-
T Consensus 254 --l-------~ag~-~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G--~l~~Ig 321 (852)
T TIGR03345 254 --L-------QAGA-SVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARG--ELRTIA 321 (852)
T ss_pred --h-------hccc-ccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCC--CeEEEE
Confidence 0 0000 0011111 1222222221 2578999999985421 11111 244444332 346666
Q ss_pred EccchHHHhh-------cCCCCeEeCCCCChHhHHHHHHHHh
Q 001998 322 TTRKETVARM-------MESTDIVYVQGLSEPECWSLFRRFA 356 (984)
Q Consensus 322 Ttr~~~v~~~-------~~~~~~~~l~~L~~~~~~~lf~~~~ 356 (984)
||...+.... ......+.+++++.++..+++....
T Consensus 322 aTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~ 363 (852)
T TIGR03345 322 ATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLA 363 (852)
T ss_pred ecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHH
Confidence 6665432211 1224589999999999999975443
No 152
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.48 E-value=0.0024 Score=73.69 Aligned_cols=153 Identities=14% Similarity=0.097 Sum_probs=90.8
Q ss_pred EEEEEecCcchHHHHHHHHhcCcccccCC--CeEEEEEecCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCC
Q 001998 209 IFSMVGMGGIGKTTLAQLAYNDNDVINNF--EIRVWVCVSDPFDEFSVAKAIIEELEGSATDLHELNSLLRRIGANIAGQ 286 (984)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 286 (984)
.+.|+|..|.|||.|++.+++. ....+ ..+++++ ..++..++...+... ..+. +++.+.+
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~--a~~~~~g~~V~Yit------aeef~~el~~al~~~-----~~~~----f~~~y~~- 377 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHY--ARRLYPGTRVRYVS------SEEFTNEFINSIRDG-----KGDS----FRRRYRE- 377 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEee------HHHHHHHHHHHHHhc-----cHHH----HHHHhhc-
Confidence 4899999999999999999984 33322 2455663 344555555444321 1122 2233332
Q ss_pred ceEEEEEcCCCCCc-CChhh-HHHhhcC-CCCCcEEEEEccch---------HHHhhcCCCCeEeCCCCChHhHHHHHHH
Q 001998 287 KFFMVLDNLWTDDY-RKWEP-FRNCLMN-GLRGSKILLTTRKE---------TVARMMESTDIVYVQGLSEPECWSLFRR 354 (984)
Q Consensus 287 r~LlVlDdvw~~~~-~~~~~-l~~~l~~-~~~gs~iiiTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~ 354 (984)
-=+|||||+..... +.|.. +...+.. ...|..|||||+.. .+...+...-.+.+++.+.+.-..++.+
T Consensus 378 ~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~k 457 (617)
T PRK14086 378 MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRK 457 (617)
T ss_pred CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHH
Confidence 34789999965322 22332 3333322 13356788888862 2334455567899999999999999998
Q ss_pred HhcCCCCCCCchhHHHHHHHHHHhcCCCh
Q 001998 355 FAFSGRTPLECDQLEEIGRGIVRKCKGLP 383 (984)
Q Consensus 355 ~~~~~~~~~~~~~l~~~~~~i~~~~~GlP 383 (984)
++....-... +++.+-|++.+.+..
T Consensus 458 ka~~r~l~l~----~eVi~yLa~r~~rnv 482 (617)
T PRK14086 458 KAVQEQLNAP----PEVLEFIASRISRNI 482 (617)
T ss_pred HHHhcCCCCC----HHHHHHHHHhccCCH
Confidence 8754332222 445555666665543
No 153
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.47 E-value=0.00034 Score=76.35 Aligned_cols=50 Identities=28% Similarity=0.479 Sum_probs=26.5
Q ss_pred CCCCCeEEEeecCCCCCCCchhhcCCCCcEEEEeCcCCCCcCCCCCCCCCcceeeec
Q 001998 782 PPDLEALEIMHYKGQTAFPSWIVSLNKLKKLKLSSCCKCEIMPPLGALPSLEILQIQ 838 (984)
Q Consensus 782 ~~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~l~~l~~Lp~L~~L~L~ 838 (984)
|++|++|.+++|.....+|..+ .++|++|.+++|..+..+| ++|+.|.+.
T Consensus 71 P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP-----~sLe~L~L~ 120 (426)
T PRK15386 71 PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP-----ESVRSLEIK 120 (426)
T ss_pred CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc-----cccceEEeC
Confidence 3456666666655544455443 2466666666664443333 245555554
No 154
>PRK08116 hypothetical protein; Validated
Probab=97.45 E-value=0.00049 Score=72.60 Aligned_cols=104 Identities=20% Similarity=0.254 Sum_probs=61.8
Q ss_pred EEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCc
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAIIEELEGSATDLHELNSLLRRIGANIAGQK 287 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 287 (984)
..+.++|..|+|||.||..+++. ...+...+++++ ..+++..+........ ........ +.+.+-.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~--l~~~~~~v~~~~------~~~ll~~i~~~~~~~~--~~~~~~~~----~~l~~~d 180 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANE--LIEKGVPVIFVN------FPQLLNRIKSTYKSSG--KEDENEII----RSLVNAD 180 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEE------HHHHHHHHHHHHhccc--cccHHHHH----HHhcCCC
Confidence 35889999999999999999994 333334566664 3455666555443221 11122222 3334333
Q ss_pred eEEEEEcCCCCCcCChhh--HHHhhcC-CCCCcEEEEEccch
Q 001998 288 FFMVLDNLWTDDYRKWEP--FRNCLMN-GLRGSKILLTTRKE 326 (984)
Q Consensus 288 ~LlVlDdvw~~~~~~~~~--l~~~l~~-~~~gs~iiiTtr~~ 326 (984)
||||||+-.+...+|.. +...+.. -..|..+|+||...
T Consensus 181 -lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 181 -LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred -EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 89999996554455654 3333322 13466799999753
No 155
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.45 E-value=9.5e-05 Score=74.66 Aligned_cols=206 Identities=17% Similarity=0.127 Sum_probs=111.6
Q ss_pred ccccccee-cCCCCcccc---CcccccccCccceEEecCCCccccchhh-ccCCcccEEecccccc-cccccccccCCCC
Q 001998 589 DHLTYGED-DGGENTVHD---IPREIEKLIHLRSLRLAGLKIEELPETC-CKLFNLQTLDINECYR-LKRLPQGVGSLVN 662 (984)
Q Consensus 589 ~~l~~Lrv-~l~~~~i~~---lp~~i~~L~~Lr~L~L~~~~i~~lp~~i-~~L~~L~~L~L~~~~~-l~~lP~~i~~L~~ 662 (984)
...+.++. |+.+|.|.. +-..+.+|++|++|+|+.|.+...-.+. ..+.||++|-|.++.. .+..-..+..++.
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 55666676 888887654 4455668899999999988854222222 3467888888887651 1223344566777
Q ss_pred CCeEEeccCCCcccCCccCCCCCCCCcCCceEecCCCCcccccccccccccccccCCCeeEEcCCCCCCChhhhhHhccc
Q 001998 663 LRHLVVSLNGDLDYLPKGVERLTSLRTLREFVVSSTGGKYCTKACKVEGLRQLNHLRGTLRIRGLGNVTDVEEAEKADLE 742 (984)
Q Consensus 663 L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~ 742 (984)
++.|+++.|+ +. .+.+-...... .-.++..|..+. ++...+.+ ....-.
T Consensus 148 vtelHmS~N~-~r-------------q~n~Dd~c~e~--------~s~~v~tlh~~~-c~~~~w~~--------~~~l~r 196 (418)
T KOG2982|consen 148 VTELHMSDNS-LR-------------QLNLDDNCIED--------WSTEVLTLHQLP-CLEQLWLN--------KNKLSR 196 (418)
T ss_pred hhhhhhccch-hh-------------hhccccccccc--------cchhhhhhhcCC-cHHHHHHH--------HHhHHh
Confidence 7777776651 11 11111100000 000111111111 00000000 000012
Q ss_pred CCCCCCeEEEEEcCCcccccCcCchhhccHHHHhhcCCCCCCCCeEEEeecCCCCCCC--chhhcCCCCcEEEEeCcCCC
Q 001998 743 KKKNIVGLELRFDKEEAATEGINEENEINHQAISEALRPPPDLEALEIMHYKGQTAFP--SWIVSLNKLKKLKLSSCCKC 820 (984)
Q Consensus 743 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~lp--~~l~~l~~L~~L~L~~~~~~ 820 (984)
..+|+.++.++.+...+. ..-.+..++|.+.-|+|..+.+.. .- +.+..++.|..|.+++++.+
T Consensus 197 ~Fpnv~sv~v~e~PlK~~-------------s~ek~se~~p~~~~LnL~~~~ids-wasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 197 IFPNVNSVFVCEGPLKTE-------------SSEKGSEPFPSLSCLNLGANNIDS-WASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred hcccchheeeecCcccch-------------hhcccCCCCCcchhhhhccccccc-HHHHHHHcCCchhheeeccCCccc
Confidence 346677777766644221 223455667777778887766433 11 12347899999999999887
Q ss_pred CcCCC-------CCCCCCcceeeecc
Q 001998 821 EIMPP-------LGALPSLEILQIQR 839 (984)
Q Consensus 821 ~~l~~-------l~~Lp~L~~L~L~~ 839 (984)
+.+.. +++|++++.|+=+.
T Consensus 263 d~l~~~err~llIaRL~~v~vLNGsk 288 (418)
T KOG2982|consen 263 DPLRGGERRFLLIARLTKVQVLNGSK 288 (418)
T ss_pred ccccCCcceEEEEeeccceEEecCcc
Confidence 65532 67888888887664
No 156
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.42 E-value=0.00011 Score=53.00 Aligned_cols=39 Identities=28% Similarity=0.468 Sum_probs=32.9
Q ss_pred ccee-cCCCCccccCcccccccCccceEEecCCCccccch
Q 001998 593 YGED-DGGENTVHDIPREIEKLIHLRSLRLAGLKIEELPE 631 (984)
Q Consensus 593 ~Lrv-~l~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~ 631 (984)
.|++ ++++|.+..+|..+++|++|++|++++|.|+.+|.
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 4677 88888999999889999999999999999987753
No 157
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.41 E-value=0.0034 Score=68.20 Aligned_cols=97 Identities=11% Similarity=0.100 Sum_probs=67.1
Q ss_pred CCceEEEEEcCCCCCcCChhhHHHhhcCCCCCcEEEEEccchH-HHhh-cCCCCeEeCCCCChHhHHHHHHHHhcCCCCC
Q 001998 285 GQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILLTTRKET-VARM-MESTDIVYVQGLSEPECWSLFRRFAFSGRTP 362 (984)
Q Consensus 285 ~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~-v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 362 (984)
+++-++|+|++...+....+.+...+..-..++.+|+||.+.. +... ......+.+.+++.+++.+.+.... ...
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~-~~~-- 181 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQAL-PES-- 181 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhc-ccC--
Confidence 4444567899987776777778877776666788888887753 3323 2336789999999999999887653 111
Q ss_pred CCchhHHHHHHHHHHhcCCChHHHHHH
Q 001998 363 LECDQLEEIGRGIVRKCKGLPLAAKTI 389 (984)
Q Consensus 363 ~~~~~l~~~~~~i~~~~~GlPLai~~~ 389 (984)
. .+.+..++..++|.|+.+..+
T Consensus 182 -~----~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 182 -D----ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred -C----hHHHHHHHHHcCCCHHHHHHH
Confidence 1 233456789999999866544
No 158
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.35 E-value=4.1e-05 Score=68.31 Aligned_cols=82 Identities=20% Similarity=0.240 Sum_probs=48.2
Q ss_pred ccccccee-cCCCCccccCcccccc-cCccceEEecCCCccccchhhccCCcccEEecccccccccccccccCCCCCCeE
Q 001998 589 DHLTYGED-DGGENTVHDIPREIEK-LIHLRSLRLAGLKIEELPETCCKLFNLQTLDINECYRLKRLPQGVGSLVNLRHL 666 (984)
Q Consensus 589 ~~l~~Lrv-~l~~~~i~~lp~~i~~-L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L 666 (984)
.....|.. ++++|.+.++|+.+.. .+.+..|+|++|.|+.+|..+..++.|+.|+++.|. +...|.-|..|.+|-.|
T Consensus 50 ~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~-l~~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNP-LNAEPRVIAPLIKLDML 128 (177)
T ss_pred hCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCc-cccchHHHHHHHhHHHh
Confidence 33444444 6666666666655543 345666666666666666666666666666666665 55556555556666666
Q ss_pred EeccC
Q 001998 667 VVSLN 671 (984)
Q Consensus 667 ~l~~~ 671 (984)
+..+|
T Consensus 129 ds~~n 133 (177)
T KOG4579|consen 129 DSPEN 133 (177)
T ss_pred cCCCC
Confidence 65554
No 159
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.34 E-value=0.0019 Score=78.83 Aligned_cols=156 Identities=17% Similarity=0.204 Sum_probs=85.5
Q ss_pred CcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcc---cccCC-CeEEEEEecCCCCHHHH
Q 001998 179 SEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDND---VINNF-EIRVWVCVSDPFDEFSV 254 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~---~~~~F-~~~~wv~~s~~~~~~~~ 254 (984)
+.++||+.++++++..|.... ..-+.++|.+|+|||++|+.+++... +...+ +..+|. + +...+
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~-------~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~----~~~~l 249 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRK-------KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-L----DMGSL 249 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCC-------CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-e----cHHHH
Confidence 368999999999999886543 22356899999999999999887321 11111 344443 1 11111
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHHHh-CCCceEEEEEcCCCCC---------cCChhhHHHhhcCCCCCcEEEEEcc
Q 001998 255 AKAIIEELEGSATDLHELNSLLRRIGANI-AGQKFFMVLDNLWTDD---------YRKWEPFRNCLMNGLRGSKILLTTR 324 (984)
Q Consensus 255 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdvw~~~---------~~~~~~l~~~l~~~~~gs~iiiTtr 324 (984)
.. +.. ...+.++....+.+.+ ..++.+|++|++..-. .+.-+.+...+..+ .-++|-+|.
T Consensus 250 ~a-------~~~-~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g--~i~~IgaTt 319 (731)
T TIGR02639 250 LA-------GTK-YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSG--KLRCIGSTT 319 (731)
T ss_pred hh-------hcc-ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCC--CeEEEEecC
Confidence 11 000 0012222222222222 3467899999985311 01112244444322 234555555
Q ss_pred chHHHh------hc-CCCCeEeCCCCChHhHHHHHHHHh
Q 001998 325 KETVAR------MM-ESTDIVYVQGLSEPECWSLFRRFA 356 (984)
Q Consensus 325 ~~~v~~------~~-~~~~~~~l~~L~~~~~~~lf~~~~ 356 (984)
..+... .+ .....+.+.+++.++..+++....
T Consensus 320 ~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 320 YEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 422211 11 224578999999999999998654
No 160
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.0045 Score=72.96 Aligned_cols=135 Identities=17% Similarity=0.275 Sum_probs=86.1
Q ss_pred CcccccHHHHHHHHHHHhcCCCCCC--CCceEEEEEEecCcchHHHHHHHHhcCcccccCC---CeEEEEEecCCCCHHH
Q 001998 179 SEVRGRDEEMRTLKSMLLCQGSDQQ--TNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNF---EIRVWVCVSDPFDEFS 253 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~~s~~~~~~~ 253 (984)
..++|.+..++.+.+.+.....+.. +....++..+|+.|||||.||+.+... -| +..+=+ |+.+
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~-----Lfg~e~aliR~------DMSE 559 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEA-----LFGDEQALIRI------DMSE 559 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHH-----hcCCCccceee------chHH
Confidence 3688999999999998876544332 345778899999999999999988762 23 223333 3333
Q ss_pred HHH-HHHHHhcCCCCCcccHHHHHHHHHHHhCCCce-EEEEEcCCCCCcCChhhHHHhhcCC----C-------CCcEEE
Q 001998 254 VAK-AIIEELEGSATDLHELNSLLRRIGANIAGQKF-FMVLDNLWTDDYRKWEPFRNCLMNG----L-------RGSKIL 320 (984)
Q Consensus 254 ~~~-~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~-LlVlDdvw~~~~~~~~~l~~~l~~~----~-------~gs~ii 320 (984)
... .-+..+-+.+++....++ --.|-+.++.++| +|.||++....++..+.+...|.++ + ..+-||
T Consensus 560 y~EkHsVSrLIGaPPGYVGyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiII 638 (786)
T COG0542 560 YMEKHSVSRLIGAPPGYVGYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIII 638 (786)
T ss_pred HHHHHHHHHHhCCCCCCceecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEE
Confidence 222 122334444443322222 2334455678888 7788999887788888888777654 2 245567
Q ss_pred EEccc
Q 001998 321 LTTRK 325 (984)
Q Consensus 321 iTtr~ 325 (984)
+||.-
T Consensus 639 mTSN~ 643 (786)
T COG0542 639 MTSNA 643 (786)
T ss_pred Eeccc
Confidence 77763
No 161
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.31 E-value=0.0021 Score=79.43 Aligned_cols=154 Identities=18% Similarity=0.163 Sum_probs=85.2
Q ss_pred CcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcc---cccCC-CeEEEEEecCCCCHHHH
Q 001998 179 SEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDND---VINNF-EIRVWVCVSDPFDEFSV 254 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~---~~~~F-~~~~wv~~s~~~~~~~~ 254 (984)
..++||+++++++++.|.... ..-+.++|.+|+|||++|+.++.... +.... +..+|. .+...+
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~-------~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-----l~~~~l 246 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT-------KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-----LDIGLL 246 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc-------cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-----eeHHHH
Confidence 468999999999999997543 22346999999999999998877321 11111 244553 122211
Q ss_pred HHHHHHHhcCCCCCcccHHHHHH-HHHHHhCCCceEEEEEcCCCC-------CcCCh-hhHHHhhcCCCCCcEEEEEccc
Q 001998 255 AKAIIEELEGSATDLHELNSLLR-RIGANIAGQKFFMVLDNLWTD-------DYRKW-EPFRNCLMNGLRGSKILLTTRK 325 (984)
Q Consensus 255 ~~~i~~~l~~~~~~~~~~~~~~~-~l~~~l~~kr~LlVlDdvw~~-------~~~~~-~~l~~~l~~~~~gs~iiiTtr~ 325 (984)
+ .+... ..+.++... .+.+.-..++.+|++|++..- ...+. +.+.+.+..+ .-++|.+|..
T Consensus 247 ~-------ag~~~-~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg--~l~~IgaTt~ 316 (821)
T CHL00095 247 L-------AGTKY-RGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARG--ELQCIGATTL 316 (821)
T ss_pred h-------ccCCC-ccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCC--CcEEEEeCCH
Confidence 1 11111 112222222 222222357899999998421 00011 2233333332 2456666665
Q ss_pred hHHHhh-------cCCCCeEeCCCCChHhHHHHHHH
Q 001998 326 ETVARM-------MESTDIVYVQGLSEPECWSLFRR 354 (984)
Q Consensus 326 ~~v~~~-------~~~~~~~~l~~L~~~~~~~lf~~ 354 (984)
.+.... .....++.+...+.++...++..
T Consensus 317 ~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~ 352 (821)
T CHL00095 317 DEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFG 352 (821)
T ss_pred HHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHH
Confidence 543221 12245778888899998888764
No 162
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.31 E-value=0.00057 Score=63.95 Aligned_cols=96 Identities=17% Similarity=0.064 Sum_probs=51.8
Q ss_pred EEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCC-Cce
Q 001998 210 FSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAIIEELEGSATDLHELNSLLRRIGANIAG-QKF 288 (984)
Q Consensus 210 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~-kr~ 288 (984)
|.|+|..|+||||+|+.+++. .. + ..+.+..+.-. ..........+...+.+.-.. ++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~--l~--~-~~~~i~~~~~~---------------~~~~~~~~~~i~~~~~~~~~~~~~~ 60 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY--LG--F-PFIEIDGSELI---------------SSYAGDSEQKIRDFFKKAKKSAKPC 60 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH--TT--S-EEEEEETTHHH---------------TSSTTHHHHHHHHHHHHHHHTSTSE
T ss_pred CEEECcCCCCeeHHHHHHHhh--cc--c-ccccccccccc---------------cccccccccccccccccccccccce
Confidence 568999999999999999984 22 1 23444332111 001111222333333333233 489
Q ss_pred EEEEEcCCCCCcCC-----------hhhHHHhhcCCC---CCcEEEEEccc
Q 001998 289 FMVLDNLWTDDYRK-----------WEPFRNCLMNGL---RGSKILLTTRK 325 (984)
Q Consensus 289 LlVlDdvw~~~~~~-----------~~~l~~~l~~~~---~gs~iiiTtr~ 325 (984)
+|++||+..-.... ...+...+.... .+..||.||..
T Consensus 61 vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~ 111 (132)
T PF00004_consen 61 VLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNS 111 (132)
T ss_dssp EEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESS
T ss_pred eeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCC
Confidence 99999995432222 233444444432 23567777776
No 163
>PRK10536 hypothetical protein; Provisional
Probab=97.31 E-value=0.0043 Score=63.47 Aligned_cols=137 Identities=15% Similarity=0.140 Sum_probs=76.6
Q ss_pred cCCcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEec----C-----
Q 001998 177 DVSEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVS----D----- 247 (984)
Q Consensus 177 ~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s----~----- 247 (984)
+...+.+|......+..++.. ..++.++|..|.|||+||.++.-+.-..+.|+..+-+.-. +
T Consensus 53 ~~~~i~p~n~~Q~~~l~al~~---------~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfL 123 (262)
T PRK10536 53 DTSPILARNEAQAHYLKAIES---------KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFL 123 (262)
T ss_pred CCccccCCCHHHHHHHHHHhc---------CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcC
Confidence 344677899999999998853 2389999999999999999887642223445544333211 0
Q ss_pred CCCHHHH----HHHHHHHhcCCCCCcccHHHHHH--------HHHHHhCCCce---EEEEEcCCCCCcCChhhHHHhhcC
Q 001998 248 PFDEFSV----AKAIIEELEGSATDLHELNSLLR--------RIGANIAGQKF---FMVLDNLWTDDYRKWEPFRNCLMN 312 (984)
Q Consensus 248 ~~~~~~~----~~~i~~~l~~~~~~~~~~~~~~~--------~l~~~l~~kr~---LlVlDdvw~~~~~~~~~l~~~l~~ 312 (984)
+-+..+- ++.+...+..-- +....+.+.. .=-.++++..+ +||+|++.+-+. .++...+..
T Consensus 124 PG~~~eK~~p~~~pi~D~L~~~~-~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~---~~~k~~ltR 199 (262)
T PRK10536 124 PGDIAEKFAPYFRPVYDVLVRRL-GASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTA---AQMKMFLTR 199 (262)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCH---HHHHHHHhh
Confidence 0112111 122222221100 0001111100 00135566665 999999976543 445555555
Q ss_pred CCCCcEEEEEccch
Q 001998 313 GLRGSKILLTTRKE 326 (984)
Q Consensus 313 ~~~gs~iiiTtr~~ 326 (984)
-+.+|+||+|--..
T Consensus 200 ~g~~sk~v~~GD~~ 213 (262)
T PRK10536 200 LGENVTVIVNGDIT 213 (262)
T ss_pred cCCCCEEEEeCChh
Confidence 67899999987644
No 164
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.24 E-value=0.0039 Score=61.01 Aligned_cols=45 Identities=18% Similarity=0.248 Sum_probs=36.2
Q ss_pred CCcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhc
Q 001998 178 VSEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 178 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
-.++||-++.++++.-+..+. +..-+.|.|++|+||||-+..+++
T Consensus 26 l~dIVGNe~tv~rl~via~~g-------nmP~liisGpPG~GKTTsi~~LAr 70 (333)
T KOG0991|consen 26 LQDIVGNEDTVERLSVIAKEG-------NMPNLIISGPPGTGKTTSILCLAR 70 (333)
T ss_pred HHHhhCCHHHHHHHHHHHHcC-------CCCceEeeCCCCCchhhHHHHHHH
Confidence 357999999999988766432 456688999999999998877766
No 165
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.23 E-value=0.0017 Score=61.42 Aligned_cols=87 Identities=20% Similarity=0.092 Sum_probs=45.9
Q ss_pred EEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCC-
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAIIEELEGSATDLHELNSLLRRIGANIAGQ- 286 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k- 286 (984)
..+.|+|.+|+||||+|+.++.. .......++++..+........... ............... ....+.+.....
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 78 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARE--LGPPGGGVIYIDGEDILEEVLDQLL-LIIVGGKKASGSGEL-RLRLALALARKLK 78 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhc--cCCCCCCEEEECCEEccccCHHHHH-hhhhhccCCCCCHHH-HHHHHHHHHHhcC
Confidence 46889999999999999999884 2222233555554443322222211 011111111111222 222333333333
Q ss_pred ceEEEEEcCCCC
Q 001998 287 KFFMVLDNLWTD 298 (984)
Q Consensus 287 r~LlVlDdvw~~ 298 (984)
..+|++|++...
T Consensus 79 ~~viiiDei~~~ 90 (148)
T smart00382 79 PDVLILDEITSL 90 (148)
T ss_pred CCEEEEECCccc
Confidence 489999999764
No 166
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.20 E-value=0.026 Score=55.98 Aligned_cols=123 Identities=20% Similarity=0.262 Sum_probs=75.6
Q ss_pred ccCCcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHH
Q 001998 176 IDVSEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVA 255 (984)
Q Consensus 176 ~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 255 (984)
++-..++|.|..++.+++--..-.. +..---|.++|.-|.||++|++++.+ ++....-..+-| .
T Consensus 57 i~L~~l~Gvd~qk~~L~~NT~~F~~---G~pANnVLLwGaRGtGKSSLVKA~~~--e~~~~glrLVEV--~--------- 120 (287)
T COG2607 57 IDLADLVGVDRQKEALVRNTEQFAE---GLPANNVLLWGARGTGKSSLVKALLN--EYADEGLRLVEV--D--------- 120 (287)
T ss_pred cCHHHHhCchHHHHHHHHHHHHHHc---CCcccceEEecCCCCChHHHHHHHHH--HHHhcCCeEEEE--c---------
Confidence 3345789999999988875443221 12233477999999999999999988 344443332222 1
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHHHhCCCceEEEEEcCCC-CCcCChhhHHHhhcCC---CCCcEEEEEccch
Q 001998 256 KAIIEELEGSATDLHELNSLLRRIGANIAGQKFFMVLDNLWT-DDYRKWEPFRNCLMNG---LRGSKILLTTRKE 326 (984)
Q Consensus 256 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~-~~~~~~~~l~~~l~~~---~~gs~iiiTtr~~ 326 (984)
..+..++..+...|+. ..+||.|+.||+.- ++...+..++..+..+ .+...++..|.++
T Consensus 121 ----------k~dl~~Lp~l~~~Lr~--~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNR 183 (287)
T COG2607 121 ----------KEDLATLPDLVELLRA--RPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNR 183 (287)
T ss_pred ----------HHHHhhHHHHHHHHhc--CCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCC
Confidence 1122223333443432 47899999999853 3345677788877653 3455566656553
No 167
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.17 E-value=0.0042 Score=60.18 Aligned_cols=139 Identities=18% Similarity=0.155 Sum_probs=76.8
Q ss_pred ccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcC----cccc--------------cCCCeEEEEE
Q 001998 183 GRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYND----NDVI--------------NNFEIRVWVC 244 (984)
Q Consensus 183 Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~----~~~~--------------~~F~~~~wv~ 244 (984)
|-+...+.+.+.+..+. -...+.++|..|+||+|+|..+.+. .... +...-..|+.
T Consensus 1 gq~~~~~~L~~~~~~~~------l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~ 74 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGR------LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIK 74 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--------SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEE
T ss_pred CcHHHHHHHHHHHHcCC------cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEe
Confidence 55667777777775432 3456789999999999999776552 1110 1122233332
Q ss_pred ecCC---CCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCceEEEEEcCCCCCcCChhhHHHhhcCCCCCcEEEE
Q 001998 245 VSDP---FDEFSVAKAIIEELEGSATDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILL 321 (984)
Q Consensus 245 ~s~~---~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iii 321 (984)
-... ..++++- ++...+.... ..+++=++|+||+.....+.+..+...+-....++++|+
T Consensus 75 ~~~~~~~i~i~~ir-~i~~~~~~~~----------------~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL 137 (162)
T PF13177_consen 75 PDKKKKSIKIDQIR-EIIEFLSLSP----------------SEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFIL 137 (162)
T ss_dssp TTTSSSSBSHHHHH-HHHHHCTSS-----------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEE
T ss_pred cccccchhhHHHHH-HHHHHHHHHH----------------hcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEE
Confidence 2221 2222221 3333322211 123455899999988777788888888888888999999
Q ss_pred EccchH-HHhh-cCCCCeEeCCCCC
Q 001998 322 TTRKET-VARM-MESTDIVYVQGLS 344 (984)
Q Consensus 322 Ttr~~~-v~~~-~~~~~~~~l~~L~ 344 (984)
+|++.. +... ......+.+.+++
T Consensus 138 ~t~~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 138 ITNNPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp EES-GGGS-HHHHTTSEEEEE----
T ss_pred EECChHHChHHHHhhceEEecCCCC
Confidence 998754 3332 2334566666553
No 168
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.17 E-value=0.0054 Score=74.54 Aligned_cols=166 Identities=16% Similarity=0.174 Sum_probs=88.4
Q ss_pred CCcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHH
Q 001998 178 VSEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKA 257 (984)
Q Consensus 178 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 257 (984)
+.+.+|.++.+++|..+|...... ......++.++|.+|+||||+|+.++.. ....|-. +..+...+..++...
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~-~~~~g~~i~l~GppG~GKTtl~~~ia~~--l~~~~~~---i~~~~~~d~~~i~g~ 394 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRV-NKIKGPILCLVGPPGVGKTSLGQSIAKA--TGRKYVR---MALGGVRDEAEIRGH 394 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhc-ccCCCceEEEECCCCCCHHHHHHHHHHH--hCCCEEE---EEcCCCCCHHHhccc
Confidence 457899999999999887632110 0123457899999999999999999872 3333322 333333333322211
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHHHhCCCceEEEEEcCCCCCcCC----hhhHHHhhcCC---------------CCCcE
Q 001998 258 IIEELEGSATDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDYRK----WEPFRNCLMNG---------------LRGSK 318 (984)
Q Consensus 258 i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~----~~~l~~~l~~~---------------~~gs~ 318 (984)
-.. ..+. ....+.+.+...- ...-+++||.+..-..+. -+.+...+... -...-
T Consensus 395 ~~~-~~g~-----~~G~~~~~l~~~~-~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~ 467 (784)
T PRK10787 395 RRT-YIGS-----MPGKLIQKMAKVG-VKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVM 467 (784)
T ss_pred hhc-cCCC-----CCcHHHHHHHhcC-CCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceE
Confidence 100 1111 1112333333322 233478899986432221 23444443321 12333
Q ss_pred EEEEccchHHHhh-cCCCCeEeCCCCChHhHHHHHHHHh
Q 001998 319 ILLTTRKETVARM-MESTDIVYVQGLSEPECWSLFRRFA 356 (984)
Q Consensus 319 iiiTtr~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~ 356 (984)
+|.|+....+... .+...++.+.+++.+|-.++.+++.
T Consensus 468 ~i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 468 FVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EEEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 4445544332222 1234578888898888877776654
No 169
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.16 E-value=0.0063 Score=68.20 Aligned_cols=119 Identities=20% Similarity=0.203 Sum_probs=75.9
Q ss_pred EEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCce
Q 001998 209 IFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAIIEELEGSATDLHELNSLLRRIGANIAGQKF 288 (984)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~ 288 (984)
++.|.|+-++||||+++.+... ..+. .+++..-+......-+.+ ....+.+.-..++.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~--~~~~---~iy~~~~d~~~~~~~l~d-----------------~~~~~~~~~~~~~~ 96 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKG--LLEE---IIYINFDDLRLDRIELLD-----------------LLRAYIELKEREKS 96 (398)
T ss_pred EEEEECCccccHHHHHHHHHhh--CCcc---eEEEEecchhcchhhHHH-----------------HHHHHHHhhccCCc
Confidence 9999999999999999766653 2111 555543322111111111 11112221122788
Q ss_pred EEEEEcCCCCCcCChhhHHHhhcCCCCCcEEEEEccchHHHh-----h-cCCCCeEeCCCCChHhHHHHH
Q 001998 289 FMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILLTTRKETVAR-----M-MESTDIVYVQGLSEPECWSLF 352 (984)
Q Consensus 289 LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~v~~-----~-~~~~~~~~l~~L~~~~~~~lf 352 (984)
.|+||.|.. ...|......+.+.++. +|++|+-+..... . .|....+.+.||+-.|...+-
T Consensus 97 yifLDEIq~--v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~ 163 (398)
T COG1373 97 YIFLDEIQN--VPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLK 163 (398)
T ss_pred eEEEecccC--chhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhc
Confidence 999999955 46798877778776665 8999988765432 2 244668899999999887653
No 170
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.15 E-value=0.0034 Score=77.48 Aligned_cols=139 Identities=15% Similarity=0.226 Sum_probs=77.9
Q ss_pred CcccccHHHHHHHHHHHhcCCCCCC--CCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHH
Q 001998 179 SEVRGRDEEMRTLKSMLLCQGSDQQ--TNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAK 256 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 256 (984)
..++|.+..++.+...+.....+.. +....++.++|..|+|||++|+.+.+. .-..-...+.+.++.-.. .
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~--l~~~~~~~i~id~se~~~-~---- 640 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANF--MFDSDDAMVRIDMSEFME-K---- 640 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHH--hhcCCCcEEEEEhHHhhh-h----
Confidence 4688999999999988865321111 223457889999999999999998863 212222334444443211 1
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHHHhCCC-ceEEEEEcCCCCCcCChhhHHHhhcCCC-----------CCcEEEEEcc
Q 001998 257 AIIEELEGSATDLHELNSLLRRIGANIAGQ-KFFMVLDNLWTDDYRKWEPFRNCLMNGL-----------RGSKILLTTR 324 (984)
Q Consensus 257 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k-r~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iiiTtr 324 (984)
.....+.+.+++....+. ...+.+.++.+ .-+|+||++...+.+.+..+...+..+. ..+-||+||.
T Consensus 641 ~~~~~LiG~~pgy~g~~~-~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN 719 (857)
T PRK10865 641 HSVSRLVGAPPGYVGYEE-GGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSN 719 (857)
T ss_pred hhHHHHhCCCCcccccch-hHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeCC
Confidence 112222222222111111 11122223223 3599999997766777777777665431 2233788887
Q ss_pred c
Q 001998 325 K 325 (984)
Q Consensus 325 ~ 325 (984)
.
T Consensus 720 ~ 720 (857)
T PRK10865 720 L 720 (857)
T ss_pred c
Confidence 5
No 171
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.15 E-value=0.012 Score=63.20 Aligned_cols=96 Identities=10% Similarity=0.072 Sum_probs=65.7
Q ss_pred CCceEEEEEcCCCCCcCChhhHHHhhcCCCCCcEEEEEccch-HHHhhc-CCCCeEeCCCCChHhHHHHHHHHhcCCCCC
Q 001998 285 GQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILLTTRKE-TVARMM-ESTDIVYVQGLSEPECWSLFRRFAFSGRTP 362 (984)
Q Consensus 285 ~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 362 (984)
+++=++|+|++...+...-..+...+-.-..++.+|++|.+. .+...+ .....+.+.+++.+++.+.+....
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~------ 185 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG------ 185 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC------
Confidence 556689999997665555566777776666677777777753 333332 336788999999999998887531
Q ss_pred CCchhHHHHHHHHHHhcCCChHHHHHHH
Q 001998 363 LECDQLEEIGRGIVRKCKGLPLAAKTIG 390 (984)
Q Consensus 363 ~~~~~l~~~~~~i~~~~~GlPLai~~~~ 390 (984)
.. ++.+..++..++|.|+.+..+.
T Consensus 186 ~~----~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 186 VS----ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred CC----hHHHHHHHHHcCCCHHHHHHHh
Confidence 11 2225568999999998765443
No 172
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.14 E-value=0.027 Score=56.78 Aligned_cols=181 Identities=19% Similarity=0.215 Sum_probs=106.8
Q ss_pred ceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEe-cCCCCHHHHHHHHHHHhcCCCCCc--ccHHHHHHHHHHH
Q 001998 206 TVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCV-SDPFDEFSVAKAIIEELEGSATDL--HELNSLLRRIGAN 282 (984)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~-s~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~~l~~~ 282 (984)
+.+++.++|.-|.|||.+++....... + +.++=|.+ ........+...|+..+..+.... ...++..+.+...
T Consensus 50 ~qg~~~vtGevGsGKTv~~Ral~~s~~--~--d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al 125 (269)
T COG3267 50 GQGILAVTGEVGSGKTVLRRALLASLN--E--DQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAAL 125 (269)
T ss_pred CCceEEEEecCCCchhHHHHHHHHhcC--C--CceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHH
Confidence 466899999999999999994433111 1 11222333 344677788888888887632211 2233444444444
Q ss_pred h-CCCc-eEEEEEcCCCCCcCChhhHHHhhcCCCCC---cEEEEEccch-------HHHhhcC-CCCe-EeCCCCChHhH
Q 001998 283 I-AGQK-FFMVLDNLWTDDYRKWEPFRNCLMNGLRG---SKILLTTRKE-------TVARMME-STDI-VYVQGLSEPEC 348 (984)
Q Consensus 283 l-~~kr-~LlVlDdvw~~~~~~~~~l~~~l~~~~~g---s~iiiTtr~~-------~v~~~~~-~~~~-~~l~~L~~~~~ 348 (984)
. +++| ..+++||.........+.++-...-...+ -+|++.-.-+ .+....+ .... |.+.|++.++.
T Consensus 126 ~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t 205 (269)
T COG3267 126 VKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAET 205 (269)
T ss_pred HHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHHH
Confidence 3 4777 89999999766555666655433221111 2344433221 1111111 1234 89999999998
Q ss_pred HHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHHHH
Q 001998 349 WSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLPLAAKTIGS 391 (984)
Q Consensus 349 ~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~ 391 (984)
..++..+..+...+.+ ---.+....|..+..|.|.+|..++.
T Consensus 206 ~~yl~~~Le~a~~~~~-l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 206 GLYLRHRLEGAGLPEP-LFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHHHHHHHhccCCCcc-cCChhHHHHHHHHhccchHHHHHHHH
Confidence 8888777654432211 11234455699999999999987764
No 173
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.14 E-value=0.0047 Score=76.56 Aligned_cols=136 Identities=18% Similarity=0.288 Sum_probs=80.1
Q ss_pred CcccccHHHHHHHHHHHhcCCCCCC--CCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHH
Q 001998 179 SEVRGRDEEMRTLKSMLLCQGSDQQ--TNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAK 256 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 256 (984)
..++|.+..++.+...+.....+.. .....++.++|..|+|||++|+.+... ....-...+.+.++...+...
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~--l~~~~~~~i~~d~s~~~~~~~--- 639 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEF--LFDDEDAMVRIDMSEYMEKHS--- 639 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhhcccch---
Confidence 4689999999999999876432111 123567889999999999999998873 222222334444443222111
Q ss_pred HHHHHhcCCCCCc---ccHHHHHHHHHHHhCCCc-eEEEEEcCCCCCcCChhhHHHhhcCCC-----------CCcEEEE
Q 001998 257 AIIEELEGSATDL---HELNSLLRRIGANIAGQK-FFMVLDNLWTDDYRKWEPFRNCLMNGL-----------RGSKILL 321 (984)
Q Consensus 257 ~i~~~l~~~~~~~---~~~~~~~~~l~~~l~~kr-~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iii 321 (984)
...+.+.+++. .+...+... ++.++ .+|+||++...+.+.+..+...+..+. ..+-||+
T Consensus 640 --~~~l~g~~~g~~g~~~~g~l~~~----v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~ 713 (852)
T TIGR03346 640 --VARLIGAPPGYVGYEEGGQLTEA----VRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIM 713 (852)
T ss_pred --HHHhcCCCCCccCcccccHHHHH----HHcCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEE
Confidence 11222222111 111223222 22333 489999998877778888887775441 3344777
Q ss_pred Eccc
Q 001998 322 TTRK 325 (984)
Q Consensus 322 Ttr~ 325 (984)
||..
T Consensus 714 TSn~ 717 (852)
T TIGR03346 714 TSNL 717 (852)
T ss_pred eCCc
Confidence 8775
No 174
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.14 E-value=0.0031 Score=69.15 Aligned_cols=139 Identities=15% Similarity=0.167 Sum_probs=87.3
Q ss_pred ceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCC
Q 001998 206 TVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAIIEELEGSATDLHELNSLLRRIGANIAG 285 (984)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 285 (984)
....+.|+|..|.|||.|++++.+ ....+......+++ +......+++..+.. .-.+.+++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign--~~~~~~~~a~v~y~----~se~f~~~~v~a~~~---------~~~~~Fk~~y-- 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGN--EALANGPNARVVYL----TSEDFTNDFVKALRD---------NEMEKFKEKY-- 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHH--HHHhhCCCceEEec----cHHHHHHHHHHHHHh---------hhHHHHHHhh--
Confidence 456799999999999999999999 45455542223322 334455555555443 1233455554
Q ss_pred CceEEEEEcCCCCC-cCChhh-HHHhhcC-CCCCcEEEEEccc---------hHHHhhcCCCCeEeCCCCChHhHHHHHH
Q 001998 286 QKFFMVLDNLWTDD-YRKWEP-FRNCLMN-GLRGSKILLTTRK---------ETVARMMESTDIVYVQGLSEPECWSLFR 353 (984)
Q Consensus 286 kr~LlVlDdvw~~~-~~~~~~-l~~~l~~-~~~gs~iiiTtr~---------~~v~~~~~~~~~~~l~~L~~~~~~~lf~ 353 (984)
.-=++++||++--. .+.|+. +...|.. ...|-.||+|++. +.+...+...-.+.+.+.+.+....++.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~ 254 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILR 254 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHH
Confidence 33488999996521 123332 3333322 1234489999964 2344556666799999999999999999
Q ss_pred HHhcCCCC
Q 001998 354 RFAFSGRT 361 (984)
Q Consensus 354 ~~~~~~~~ 361 (984)
+++....-
T Consensus 255 kka~~~~~ 262 (408)
T COG0593 255 KKAEDRGI 262 (408)
T ss_pred HHHHhcCC
Confidence 87654443
No 175
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.13 E-value=0.018 Score=70.73 Aligned_cols=166 Identities=14% Similarity=0.174 Sum_probs=85.1
Q ss_pred CCcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHH
Q 001998 178 VSEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKA 257 (984)
Q Consensus 178 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 257 (984)
..+++|.+..++++.+++....... .....++.++|.+|+|||++|+.+.+. ....|-. ++++...+..++...
T Consensus 319 ~~~~~G~~~~k~~i~~~~~~~~~~~-~~~~~~lll~GppG~GKT~lAk~iA~~--l~~~~~~---i~~~~~~~~~~i~g~ 392 (775)
T TIGR00763 319 DEDHYGLKKVKERILEYLAVQKLRG-KMKGPILCLVGPPGVGKTSLGKSIAKA--LNRKFVR---FSLGGVRDEAEIRGH 392 (775)
T ss_pred hhhcCChHHHHHHHHHHHHHHHhhc-CCCCceEEEECCCCCCHHHHHHHHHHH--hcCCeEE---EeCCCcccHHHHcCC
Confidence 3468899999999988764321000 112347899999999999999999983 4334321 222332233222110
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHHHhCCCceEEEEEcCCCCCcC----ChhhHHHhhcC--------C-------CCCcE
Q 001998 258 IIEELEGSATDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDYR----KWEPFRNCLMN--------G-------LRGSK 318 (984)
Q Consensus 258 i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~----~~~~l~~~l~~--------~-------~~gs~ 318 (984)
.....+ .....+.+.+...-. ++-+|+||++...... .-..+...+.. . ..+.-
T Consensus 393 -----~~~~~g-~~~g~i~~~l~~~~~-~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~ 465 (775)
T TIGR00763 393 -----RRTYVG-AMPGRIIQGLKKAKT-KNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVI 465 (775)
T ss_pred -----CCceeC-CCCchHHHHHHHhCc-CCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEE
Confidence 000000 111223333443322 3347899998643221 11223322211 1 02234
Q ss_pred EEEEccchH-HHhh-cCCCCeEeCCCCChHhHHHHHHHHh
Q 001998 319 ILLTTRKET-VARM-MESTDIVYVQGLSEPECWSLFRRFA 356 (984)
Q Consensus 319 iiiTtr~~~-v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~ 356 (984)
+|.||.... +... ......+.+.+++.++-.+++..+.
T Consensus 466 ~I~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 466 FIATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred EEEecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHH
Confidence 455554432 1111 2234578899999888888776543
No 176
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.10 E-value=0.0048 Score=75.32 Aligned_cols=121 Identities=17% Similarity=0.213 Sum_probs=71.7
Q ss_pred CcccccHHHHHHHHHHHhcCCCCCC--CCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHH
Q 001998 179 SEVRGRDEEMRTLKSMLLCQGSDQQ--TNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAK 256 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 256 (984)
..++|.+..++.+...+.....+.. +....++.++|+.|+|||+||+.++.. . +...+.++.+...+...
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~--l---~~~~~~~d~se~~~~~~--- 525 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEA--L---GVHLERFDMSEYMEKHT--- 525 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHH--h---cCCeEEEeCchhhhccc---
Confidence 4588999999999888874321111 224557899999999999999999873 2 23345555544222111
Q ss_pred HHHHHhcCCCCC---cccHHHHHHHHHHHhCCCc-eEEEEEcCCCCCcCChhhHHHhhcCC
Q 001998 257 AIIEELEGSATD---LHELNSLLRRIGANIAGQK-FFMVLDNLWTDDYRKWEPFRNCLMNG 313 (984)
Q Consensus 257 ~i~~~l~~~~~~---~~~~~~~~~~l~~~l~~kr-~LlVlDdvw~~~~~~~~~l~~~l~~~ 313 (984)
+ ..+-+...+ ..+...+. +.++.++ -+|+||+++..+.+.++.+...+..+
T Consensus 526 -~-~~lig~~~gyvg~~~~~~l~----~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~g 580 (731)
T TIGR02639 526 -V-SRLIGAPPGYVGFEQGGLLT----EAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYA 580 (731)
T ss_pred -H-HHHhcCCCCCcccchhhHHH----HHHHhCCCeEEEEechhhcCHHHHHHHHHhhccC
Confidence 1 111121111 11222233 3333344 49999999877777777777766543
No 177
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.10 E-value=0.0028 Score=74.20 Aligned_cols=52 Identities=17% Similarity=0.290 Sum_probs=40.8
Q ss_pred cCCcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcC
Q 001998 177 DVSEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 177 ~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
...+++|.+..++++..++....-+ ....+++.|+|..|.||||+++.+++.
T Consensus 82 ~ldel~~~~~ki~~l~~~l~~~~~~--~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 82 TQHELAVHKKKIEEVETWLKAQVLE--NAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred CHHHhcCcHHHHHHHHHHHHhcccc--cCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999988653311 123468999999999999999999874
No 178
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.10 E-value=0.016 Score=62.34 Aligned_cols=93 Identities=11% Similarity=0.077 Sum_probs=67.0
Q ss_pred CCceEEEEEcCCCCCcCChhhHHHhhcCCCCCcEEEEEccch-HHHhh-cCCCCeEeCCCCChHhHHHHHHHHhcCCCCC
Q 001998 285 GQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILLTTRKE-TVARM-MESTDIVYVQGLSEPECWSLFRRFAFSGRTP 362 (984)
Q Consensus 285 ~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~-~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 362 (984)
+++=++|+|++...+......+...+..-..++.+|++|.+. .+... ......+.+.+++.+++.+.+....
T Consensus 107 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~------ 180 (319)
T PRK06090 107 NGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQG------ 180 (319)
T ss_pred CCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcC------
Confidence 445588999998777677788888887766778777777664 34433 3446789999999999999886532
Q ss_pred CCchhHHHHHHHHHHhcCCChHHHHHH
Q 001998 363 LECDQLEEIGRGIVRKCKGLPLAAKTI 389 (984)
Q Consensus 363 ~~~~~l~~~~~~i~~~~~GlPLai~~~ 389 (984)
.. .+..++..++|.|+.+..+
T Consensus 181 ~~------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 181 IT------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred Cc------hHHHHHHHcCCCHHHHHHH
Confidence 01 1245788999999877554
No 179
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.04 E-value=0.0089 Score=65.42 Aligned_cols=152 Identities=10% Similarity=0.114 Sum_probs=90.2
Q ss_pred cccc-cHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccc--------------------cCCC
Q 001998 180 EVRG-RDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVI--------------------NNFE 238 (984)
Q Consensus 180 ~~~G-r~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~F~ 238 (984)
.++| -+..++.+...+..+. -.....++|..|+||||+|+.+.+..--. .|.|
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~------l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD 79 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNR------LSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPD 79 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCC------CCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCC
Confidence 4566 6667777777775432 35677899999999999998775521000 0222
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHH-HhCCCceEEEEEcCCCCCcCChhhHHHhhcCCCCCc
Q 001998 239 IRVWVCVSDPFDEFSVAKAIIEELEGSATDLHELNSLLRRIGA-NIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGS 317 (984)
Q Consensus 239 ~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs 317 (984)
.......+. .....++.++...+.. -..+.+=++|+|++...+....+.+...+.....++
T Consensus 80 ~~~i~~~~~------------------~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~ 141 (329)
T PRK08058 80 VHLVAPDGQ------------------SIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGT 141 (329)
T ss_pred EEEeccccc------------------cCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCc
Confidence 211110000 0111122222222221 123455579999997655555667777777766778
Q ss_pred EEEEEccchH-HHhhc-CCCCeEeCCCCChHhHHHHHHHH
Q 001998 318 KILLTTRKET-VARMM-ESTDIVYVQGLSEPECWSLFRRF 355 (984)
Q Consensus 318 ~iiiTtr~~~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~~ 355 (984)
.+|++|.+.. +...+ .....+++.+++.++..+.+...
T Consensus 142 ~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 142 TAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred eEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 8887776643 33322 33678999999999998888653
No 180
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.03 E-value=9e-05 Score=73.82 Aligned_cols=83 Identities=22% Similarity=0.229 Sum_probs=59.1
Q ss_pred ccccccee-cCCCCcccc-----CcccccccCccceEEecCCCcc----ccc-------hhhccCCcccEEecccccccc
Q 001998 589 DHLTYGED-DGGENTVHD-----IPREIEKLIHLRSLRLAGLKIE----ELP-------ETCCKLFNLQTLDINECYRLK 651 (984)
Q Consensus 589 ~~l~~Lrv-~l~~~~i~~-----lp~~i~~L~~Lr~L~L~~~~i~----~lp-------~~i~~L~~L~~L~L~~~~~l~ 651 (984)
..+..+.- ++++|.|.. +...|.+-.+|+.-+++.-... ++| +.+-++++||+.+|+.|..-.
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 33555555 999998753 5566777788888888764322 344 345678999999999988555
Q ss_pred ccccc----ccCCCCCCeEEeccC
Q 001998 652 RLPQG----VGSLVNLRHLVVSLN 671 (984)
Q Consensus 652 ~lP~~----i~~L~~L~~L~l~~~ 671 (984)
..|.. |.+-+.|.||.+++|
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~Nn 130 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNN 130 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecC
Confidence 55544 467788999999887
No 181
>PRK08118 topology modulation protein; Reviewed
Probab=97.02 E-value=0.00025 Score=69.09 Aligned_cols=34 Identities=26% Similarity=0.530 Sum_probs=27.5
Q ss_pred EEEEEecCcchHHHHHHHHhcCcccc-cCCCeEEE
Q 001998 209 IFSMVGMGGIGKTTLAQLAYNDNDVI-NNFEIRVW 242 (984)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~w 242 (984)
.|.|+|.+|+||||||+.+++...+. -+||..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 58899999999999999999864443 46777776
No 182
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.02 E-value=0.026 Score=60.93 Aligned_cols=180 Identities=8% Similarity=0.011 Sum_probs=100.7
Q ss_pred HHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCC------Ce--EEEEEecCCCCHHHHHHHH
Q 001998 187 EMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNF------EI--RVWVCVSDPFDEFSVAKAI 258 (984)
Q Consensus 187 ~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F------~~--~~wv~~s~~~~~~~~~~~i 258 (984)
..+.+...+..+. -...+.++|+.|+||+++|+.+..----.... .| .-++..+..+|...+..
T Consensus 10 ~~~~l~~~~~~~r------l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p-- 81 (325)
T PRK06871 10 TYQQITQAFQQGL------GHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEP-- 81 (325)
T ss_pred HHHHHHHHHHcCC------cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcc--
Confidence 3445555554322 34577899999999999998776521000000 00 00001111111110000
Q ss_pred HHHhcCCCCCcccHHHHHHHHHHH-hCCCceEEEEEcCCCCCcCChhhHHHhhcCCCCCcEEEEEccch-HHHhh-cCCC
Q 001998 259 IEELEGSATDLHELNSLLRRIGAN-IAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILLTTRKE-TVARM-MEST 335 (984)
Q Consensus 259 ~~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~-~v~~~-~~~~ 335 (984)
..+......++.++.+.+... ..+++=++|+|++...+......+...+-.-..++.+|++|.+. .+... ....
T Consensus 82 ---~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC 158 (325)
T PRK06871 82 ---IDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRC 158 (325)
T ss_pred ---ccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhc
Confidence 000111122233333333221 23566688899998776667777888887777778888877764 34433 2336
Q ss_pred CeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCChHHH
Q 001998 336 DIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLPLAA 386 (984)
Q Consensus 336 ~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai 386 (984)
..+.+.+++.++..+.+..... .. ...+...+..++|.|+.+
T Consensus 159 ~~~~~~~~~~~~~~~~L~~~~~-----~~----~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 159 QTWLIHPPEEQQALDWLQAQSS-----AE----ISEILTALRINYGRPLLA 200 (325)
T ss_pred eEEeCCCCCHHHHHHHHHHHhc-----cC----hHHHHHHHHHcCCCHHHH
Confidence 7899999999999998887541 11 112445778899999644
No 183
>PRK08181 transposase; Validated
Probab=97.01 E-value=0.002 Score=67.51 Aligned_cols=100 Identities=17% Similarity=0.134 Sum_probs=56.7
Q ss_pred EEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCce
Q 001998 209 IFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAIIEELEGSATDLHELNSLLRRIGANIAGQKF 288 (984)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~ 288 (984)
-+.++|..|+|||.||..+.+. .......++|+. ..+++..+..... ....+.....+ .+.=
T Consensus 108 nlll~Gp~GtGKTHLa~Aia~~--a~~~g~~v~f~~------~~~L~~~l~~a~~-----~~~~~~~l~~l-----~~~d 169 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAIGLA--LIENGWRVLFTR------TTDLVQKLQVARR-----ELQLESAIAKL-----DKFD 169 (269)
T ss_pred eEEEEecCCCcHHHHHHHHHHH--HHHcCCceeeee------HHHHHHHHHHHHh-----CCcHHHHHHHH-----hcCC
Confidence 4889999999999999999873 333334556664 3445555533221 11222222222 2344
Q ss_pred EEEEEcCCCCCcCChh--hHHHhhcCCCCCcEEEEEccch
Q 001998 289 FMVLDNLWTDDYRKWE--PFRNCLMNGLRGSKILLTTRKE 326 (984)
Q Consensus 289 LlVlDdvw~~~~~~~~--~l~~~l~~~~~gs~iiiTtr~~ 326 (984)
||||||+.......|. .+...+.....+..+||||...
T Consensus 170 LLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 170 LLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred EEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 9999999654433443 2333333211123688888753
No 184
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.98 E-value=0.0042 Score=74.81 Aligned_cols=155 Identities=14% Similarity=0.174 Sum_probs=85.8
Q ss_pred CcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCccccc--C---CCeEEEEEecCCCCHHH
Q 001998 179 SEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVIN--N---FEIRVWVCVSDPFDEFS 253 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~---F~~~~wv~~s~~~~~~~ 253 (984)
..++||++++++++..|..... .-+.++|.+|+|||++|+.++... +.. . .++.+|.. +...
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~~-------~n~LLvGppGvGKT~lae~la~~i-~~~~vP~~l~~~~~~~l-----~~~~ 252 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRRK-------NNPLLVGESGVGKTAIAEGLAWRI-VQGDVPEVMADCTIYSL-----DIGS 252 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccCC-------CCeEEECCCCCCHHHHHHHHHHHH-HhcCCCchhcCCeEEec-----cHHH
Confidence 3589999999999999876431 223579999999999999988631 111 1 24455531 1111
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHHh-CCCceEEEEEcCCCC------Cc--CChhh-HHHhhcCCCCCcEEEEEc
Q 001998 254 VAKAIIEELEGSATDLHELNSLLRRIGANI-AGQKFFMVLDNLWTD------DY--RKWEP-FRNCLMNGLRGSKILLTT 323 (984)
Q Consensus 254 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdvw~~------~~--~~~~~-l~~~l~~~~~gs~iiiTt 323 (984)
+ + .+.. ...+.+.....+.+.+ +.++.+|++|++..- .. .+... +...+..+ .-+||-+|
T Consensus 253 l----l---aG~~-~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g--~i~vIgAT 322 (758)
T PRK11034 253 L----L---AGTK-YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG--KIRVIGST 322 (758)
T ss_pred H----h---cccc-hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCC--CeEEEecC
Confidence 1 1 1110 0112222222222222 356779999998531 01 11111 33333222 34556565
Q ss_pred cchHHHhh-------cCCCCeEeCCCCChHhHHHHHHHHh
Q 001998 324 RKETVARM-------MESTDIVYVQGLSEPECWSLFRRFA 356 (984)
Q Consensus 324 r~~~v~~~-------~~~~~~~~l~~L~~~~~~~lf~~~~ 356 (984)
...+.... ......+.++..+.++..+++....
T Consensus 323 t~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 323 TYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred ChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 54443221 1223578999999999999988653
No 185
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.98 E-value=0.00086 Score=65.96 Aligned_cols=99 Identities=21% Similarity=0.326 Sum_probs=51.9
Q ss_pred EEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCc
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAIIEELEGSATDLHELNSLLRRIGANIAGQK 287 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 287 (984)
.-+.++|..|+|||.||..+.+. ...+=..+.|+.+ .+++..+ .....+ ...+.....+ . +-
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~--~~~~g~~v~f~~~------~~L~~~l----~~~~~~-~~~~~~~~~l----~-~~ 109 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANE--AIRKGYSVLFITA------SDLLDEL----KQSRSD-GSYEELLKRL----K-RV 109 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH--HHHTT--EEEEEH------HHHHHHH----HCCHCC-TTHCHHHHHH----H-TS
T ss_pred eEEEEEhhHhHHHHHHHHHHHHH--hccCCcceeEeec------Cceeccc----cccccc-cchhhhcCcc----c-cc
Confidence 45899999999999999999873 3223334666743 3444443 322111 1222222222 2 23
Q ss_pred eEEEEEcCCCCCcCChhh--HHHhhcCC-CCCcEEEEEccc
Q 001998 288 FFMVLDNLWTDDYRKWEP--FRNCLMNG-LRGSKILLTTRK 325 (984)
Q Consensus 288 ~LlVlDdvw~~~~~~~~~--l~~~l~~~-~~gs~iiiTtr~ 325 (984)
=||||||+-.+....|.. +...+... .++ .+||||..
T Consensus 110 dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~-~tIiTSN~ 149 (178)
T PF01695_consen 110 DLLILDDLGYEPLSEWEAELLFEIIDERYERK-PTIITSNL 149 (178)
T ss_dssp SCEEEETCTSS---HHHHHCTHHHHHHHHHT--EEEEEESS
T ss_pred cEecccccceeeecccccccchhhhhHhhccc-CeEeeCCC
Confidence 478899997655444543 22222211 223 58888875
No 186
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.97 E-value=0.0014 Score=66.68 Aligned_cols=35 Identities=23% Similarity=0.315 Sum_probs=28.8
Q ss_pred EEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEe
Q 001998 209 IFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCV 245 (984)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~ 245 (984)
.++|+|..|.|||||+..+..+ ....|+.+++++-
T Consensus 15 r~viIG~sGSGKT~li~~lL~~--~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYY--LRHKFDHIFLITP 49 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHh--hcccCCEEEEEec
Confidence 5779999999999999998873 6778977776654
No 187
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.96 E-value=0.00017 Score=64.50 Aligned_cols=92 Identities=18% Similarity=0.220 Sum_probs=75.2
Q ss_pred ccCCCceeEEeccCCCcchhhhHHhhhccccccee-cCCCCccccCcccccccCccceEEecCCCccccchhhccCCccc
Q 001998 562 IFNAKKLRSLLIHSPLEVLSPVLKGLFDHLTYGED-DGGENTVHDIPREIEKLIHLRSLRLAGLKIEELPETCCKLFNLQ 640 (984)
Q Consensus 562 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lrv-~l~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~ 640 (984)
+....+|...++++|. +..+++.+-..+..... ++++|.+.++|..+..++.||.|+++.|.+...|..|..|.+|-
T Consensus 49 l~~~~el~~i~ls~N~--fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~ 126 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNG--FKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLD 126 (177)
T ss_pred HhCCceEEEEecccch--hhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHH
Confidence 3444566677777776 44545555566667777 89999999999999999999999999999999999999999999
Q ss_pred EEeccccccccccccc
Q 001998 641 TLDINECYRLKRLPQG 656 (984)
Q Consensus 641 ~L~L~~~~~l~~lP~~ 656 (984)
.||..+|. ...+|.+
T Consensus 127 ~Lds~~na-~~eid~d 141 (177)
T KOG4579|consen 127 MLDSPENA-RAEIDVD 141 (177)
T ss_pred HhcCCCCc-cccCcHH
Confidence 99999987 7777765
No 188
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.93 E-value=0.00074 Score=80.36 Aligned_cols=127 Identities=21% Similarity=0.179 Sum_probs=88.1
Q ss_pred cceeEEEEEecCcc--cccccc-cCCCceeEEeccCCCcchhhhHHhhhccccccee-cCCCCccccCcccccccCccce
Q 001998 543 DKLRHSILVLDKVA--SFPVSI-FNAKKLRSLLIHSPLEVLSPVLKGLFDHLTYGED-DGGENTVHDIPREIEKLIHLRS 618 (984)
Q Consensus 543 ~~~r~l~l~~~~~~--~~~~~~-~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lrv-~l~~~~i~~lp~~i~~L~~Lr~ 618 (984)
.+++|+.+.+...- ..+..+ ..+|.||+|.+.+-...... +...+.+|+.|+. |++++++..+ ..+++|++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~d-F~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDD-FSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchh-HHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence 45666666543221 112222 35789999999886533333 4556788999999 9999998888 67899999999
Q ss_pred EEecCCCccccc--hhhccCCcccEEeccccccccccccc-------ccCCCCCCeEEeccCC
Q 001998 619 LRLAGLKIEELP--ETCCKLFNLQTLDINECYRLKRLPQG-------VGSLVNLRHLVVSLNG 672 (984)
Q Consensus 619 L~L~~~~i~~lp--~~i~~L~~L~~L~L~~~~~l~~lP~~-------i~~L~~L~~L~l~~~~ 672 (984)
|.+++-.+..-+ ..+.+|++|++||+|...... -|.- -..||+||.|+.+++.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~-~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNND-DTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeecccccccc-chHHHHHHHHhcccCccccEEecCCcc
Confidence 999887776433 367789999999999865332 2211 1348899999988773
No 189
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.92 E-value=0.0057 Score=68.68 Aligned_cols=159 Identities=13% Similarity=0.124 Sum_probs=87.9
Q ss_pred CcccccHHHHHHHHHHHhcCCCC------CCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHH
Q 001998 179 SEVRGRDEEMRTLKSMLLCQGSD------QQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEF 252 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 252 (984)
.++.|.+..++++.+.+.-+-.. .+-...+-+.++|.+|.|||++|+.+++. ....| +.+..+.
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~e--l~~~f---i~V~~se----- 252 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANE--TSATF---LRVVGSE----- 252 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHh--hCCCE---EEEecch-----
Confidence 46789999999988876421100 00123445779999999999999999983 44444 1121111
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCceEEEEEcCCCCC--------cCC---hhhHHHhh---cC--CCCC
Q 001998 253 SVAKAIIEELEGSATDLHELNSLLRRIGANIAGQKFFMVLDNLWTDD--------YRK---WEPFRNCL---MN--GLRG 316 (984)
Q Consensus 253 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~--------~~~---~~~l~~~l---~~--~~~g 316 (984)
+. ....+. ....+...+.....+.+.+|+||++..-. ... -..+...+ .. ...+
T Consensus 253 -L~----~k~~Ge-----~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~ 322 (438)
T PTZ00361 253 -LI----QKYLGD-----GPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGD 322 (438)
T ss_pred -hh----hhhcch-----HHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCC
Confidence 11 111110 11112222333334678899999974210 000 01122222 11 2345
Q ss_pred cEEEEEccchHHHhh-c-C---CCCeEeCCCCChHhHHHHHHHHhc
Q 001998 317 SKILLTTRKETVARM-M-E---STDIVYVQGLSEPECWSLFRRFAF 357 (984)
Q Consensus 317 s~iiiTtr~~~v~~~-~-~---~~~~~~l~~L~~~~~~~lf~~~~~ 357 (984)
.+||.||...+.... + . -...+++...+.++..++|..+..
T Consensus 323 V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~ 368 (438)
T PTZ00361 323 VKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTS 368 (438)
T ss_pred eEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHh
Confidence 678888876543332 2 1 145788999999999999987753
No 190
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.90 E-value=0.0082 Score=74.46 Aligned_cols=153 Identities=18% Similarity=0.218 Sum_probs=82.9
Q ss_pred CcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccC------CCeEEEEEecCCCCHH
Q 001998 179 SEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINN------FEIRVWVCVSDPFDEF 252 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~------F~~~~wv~~s~~~~~~ 252 (984)
..++||+.++++++..|.... ..-+.++|.+|+|||++|+.+... +... ....+|.. +..
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~-------~~n~lL~G~pGvGKT~l~~~la~~--i~~~~~p~~l~~~~~~~l-----~~~ 238 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRT-------KNNPVLIGEPGVGKTAIVEGLAQR--IVNGDVPESLKNKRLLAL-----DMG 238 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCC-------CCceEEEcCCCCCHHHHHHHHHHH--HhccCCchhhcCCeEEEe-----eHH
Confidence 369999999999999996533 223458999999999999988773 2211 12333321 111
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHHh--CCCceEEEEEcCCCCC-----cC---ChhhHHHhhcCCCCCcEEEEE
Q 001998 253 SVAKAIIEELEGSATDLHELNSLLRRIGANI--AGQKFFMVLDNLWTDD-----YR---KWEPFRNCLMNGLRGSKILLT 322 (984)
Q Consensus 253 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~kr~LlVlDdvw~~~-----~~---~~~~l~~~l~~~~~gs~iiiT 322 (984)
.+. .+.. ...+.+.....+.+.+ .+++.+|++|++..-. .. .-+.+...+.. ..-++|-+
T Consensus 239 ~l~-------a~~~-~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~--g~i~~Iga 308 (852)
T TIGR03346 239 ALI-------AGAK-YRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALAR--GELHCIGA 308 (852)
T ss_pred HHh-------hcch-hhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhc--CceEEEEe
Confidence 111 0100 0012222222222222 2468999999985321 00 11112222211 12355555
Q ss_pred ccchHHHhh-------cCCCCeEeCCCCChHhHHHHHHHH
Q 001998 323 TRKETVARM-------MESTDIVYVQGLSEPECWSLFRRF 355 (984)
Q Consensus 323 tr~~~v~~~-------~~~~~~~~l~~L~~~~~~~lf~~~ 355 (984)
|........ ......+.+...+.++...++...
T Consensus 309 Tt~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~ 348 (852)
T TIGR03346 309 TTLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGL 348 (852)
T ss_pred CcHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHH
Confidence 554443221 122356788888999999988765
No 191
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.90 E-value=0.0059 Score=65.63 Aligned_cols=122 Identities=11% Similarity=0.160 Sum_probs=72.2
Q ss_pred ccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHHHHHh
Q 001998 183 GRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAIIEEL 262 (984)
Q Consensus 183 Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l 262 (984)
+|....+...+++..-.. +...+-+.++|..|+|||.||..+++. ....-..+.++++. +++.++....
T Consensus 135 ~~~~~~~~~~~fi~~~~~---~~~~~gl~L~G~~G~GKThLa~Aia~~--l~~~g~~v~~~~~~------~l~~~lk~~~ 203 (306)
T PRK08939 135 DRLDALMAALDFLEAYPP---GEKVKGLYLYGDFGVGKSYLLAAIANE--LAKKGVSSTLLHFP------EFIRELKNSI 203 (306)
T ss_pred HHHHHHHHHHHHHHHhhc---cCCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEEEHH------HHHHHHHHHH
Confidence 455555555666653221 113456889999999999999999984 33332345666543 4555555544
Q ss_pred cCCCCCcccHHHHHHHHHHHhCCCceEEEEEcCCCCCcCChhh--HHHhh-cCC-CCCcEEEEEccc
Q 001998 263 EGSATDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDYRKWEP--FRNCL-MNG-LRGSKILLTTRK 325 (984)
Q Consensus 263 ~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~--l~~~l-~~~-~~gs~iiiTtr~ 325 (984)
... ........ + .+-=||||||+-.+....|.. +...+ ... ..+-.+|+||.-
T Consensus 204 ~~~-----~~~~~l~~----l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 204 SDG-----SVKEKIDA----V-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred hcC-----cHHHHHHH----h-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 221 12222222 2 345589999997766667864 44433 222 245678888874
No 192
>PRK12377 putative replication protein; Provisional
Probab=96.90 E-value=0.0034 Score=64.93 Aligned_cols=101 Identities=19% Similarity=0.186 Sum_probs=58.6
Q ss_pred EEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCc
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAIIEELEGSATDLHELNSLLRRIGANIAGQK 287 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 287 (984)
..+.++|..|+|||+||..+++. .......++++++. +++..|-...... ....... +.+ .+-
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~--l~~~g~~v~~i~~~------~l~~~l~~~~~~~----~~~~~~l----~~l-~~~ 164 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNR--LLAKGRSVIVVTVP------DVMSRLHESYDNG----QSGEKFL----QEL-CKV 164 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEEEHH------HHHHHHHHHHhcc----chHHHHH----HHh-cCC
Confidence 56889999999999999999984 43444456777543 4555554433211 1112222 222 355
Q ss_pred eEEEEEcCCCCCcCChhh--HHHhhcCC-CCCcEEEEEccc
Q 001998 288 FFMVLDNLWTDDYRKWEP--FRNCLMNG-LRGSKILLTTRK 325 (984)
Q Consensus 288 ~LlVlDdvw~~~~~~~~~--l~~~l~~~-~~gs~iiiTtr~ 325 (984)
=||||||+-.+....|.. +...+... ...--+||||..
T Consensus 165 dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 165 DLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred CEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 699999996544445653 33333321 223357888764
No 193
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.90 E-value=0.035 Score=63.61 Aligned_cols=207 Identities=14% Similarity=0.109 Sum_probs=121.4
Q ss_pred CcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcc------cccCCCeEEEEEecCCCCHH
Q 001998 179 SEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDND------VINNFEIRVWVCVSDPFDEF 252 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~------~~~~F~~~~wv~~s~~~~~~ 252 (984)
..+-+|+.|..+|.+++...-++ ...-+.+.|.|.+|.|||..+..|.+.-+ -...| ..+.|+.-.-....
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~~--~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f-~yveINgm~l~~~~ 472 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFISD--QGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKF-DYVEINGLRLASPR 472 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcCC--CCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCc-cEEEEcceeecCHH
Confidence 34669999999999988654321 12345899999999999999999987321 12234 34456656666799
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHHh-----CCCceEEEEEcCCCCCcCChhhHHHhhcC-CCCCcEEEEEccc-
Q 001998 253 SVAKAIIEELEGSATDLHELNSLLRRIGANI-----AGQKFFMVLDNLWTDDYRKWEPFRNCLMN-GLRGSKILLTTRK- 325 (984)
Q Consensus 253 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdvw~~~~~~~~~l~~~l~~-~~~gs~iiiTtr~- 325 (984)
+++..|.+++.+.... .....+.|..+. ..+..+|++|++..--...=+-+...|.+ ..++||++|-+=.
T Consensus 473 ~~Y~~I~~~lsg~~~~---~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaN 549 (767)
T KOG1514|consen 473 EIYEKIWEALSGERVT---WDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIAN 549 (767)
T ss_pred HHHHHHHHhcccCccc---HHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecc
Confidence 9999999999875432 122233333333 24567888888732111111123333333 4578887665421
Q ss_pred -hH---------HHhhcCCCCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHHHHhh
Q 001998 326 -ET---------VARMMESTDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLPLAAKTIGSLL 393 (984)
Q Consensus 326 -~~---------v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~~l 393 (984)
.+ ++..+| ...+..+|-+.++-.++...+..+.. .-.+...+-++++|+.-.|-.-.|+.+.-++.
T Consensus 550 TmdlPEr~l~nrvsSRlg-~tRi~F~pYth~qLq~Ii~~RL~~~~-~f~~~aielvarkVAavSGDaRraldic~RA~ 625 (767)
T KOG1514|consen 550 TMDLPERLLMNRVSSRLG-LTRICFQPYTHEQLQEIISARLKGLD-AFENKAIELVARKVAAVSGDARRALDICRRAA 625 (767)
T ss_pred cccCHHHHhccchhhhcc-ceeeecCCCCHHHHHHHHHHhhcchh-hcchhHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 11 111111 23556677777777777766654432 22334455556666666665555555554443
No 194
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.86 E-value=0.017 Score=59.69 Aligned_cols=103 Identities=15% Similarity=0.206 Sum_probs=59.1
Q ss_pred eEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCC
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAIIEELEGSATDLHELNSLLRRIGANIAGQ 286 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 286 (984)
...+.++|.+|+|||+||..+++. ....-..+++++ ..+++..+-..... .....+.+. +.+. +
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~--l~~~g~~v~~it------~~~l~~~l~~~~~~---~~~~~~~~l----~~l~-~ 162 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNE--LLLRGKSVLIIT------VADIMSAMKDTFSN---SETSEEQLL----NDLS-N 162 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEE------HHHHHHHHHHHHhh---ccccHHHHH----HHhc-c
Confidence 347889999999999999999984 333334556663 34455554443321 111122222 2334 3
Q ss_pred ceEEEEEcCCCCCcCChhh--HHHhhcC-CCCCcEEEEEccc
Q 001998 287 KFFMVLDNLWTDDYRKWEP--FRNCLMN-GLRGSKILLTTRK 325 (984)
Q Consensus 287 r~LlVlDdvw~~~~~~~~~--l~~~l~~-~~~gs~iiiTtr~ 325 (984)
.=+||+||+-.....+|.. +...+.. -...-.+||||..
T Consensus 163 ~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 163 VDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 4488899997665556664 2222322 1223457788764
No 195
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.85 E-value=0.0079 Score=74.28 Aligned_cols=45 Identities=29% Similarity=0.374 Sum_probs=37.1
Q ss_pred CcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcC
Q 001998 179 SEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
..++||+.++++++..|.... ..-+.++|.+|+|||++|+.+...
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~-------~~n~lL~G~pGvGKT~l~~~la~~ 222 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRT-------KNNPVLIGEPGVGKTAIVEGLAQR 222 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCC-------cCceEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999997543 223558999999999999988873
No 196
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=96.85 E-value=0.011 Score=66.04 Aligned_cols=182 Identities=13% Similarity=0.118 Sum_probs=96.5
Q ss_pred cCCcccccHHHHHHHHHHHhcCCC------CCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCC
Q 001998 177 DVSEVRGRDEEMRTLKSMLLCQGS------DQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFD 250 (984)
Q Consensus 177 ~~~~~~Gr~~~~~~l~~~L~~~~~------~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~ 250 (984)
.-.++.|.+..++++.+.+..+-. ..+-...+-+.++|.+|.|||+||+.+++. ....| +.+..
T Consensus 143 ~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~--l~~~f---i~i~~----- 212 (398)
T PTZ00454 143 TYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH--TTATF---IRVVG----- 212 (398)
T ss_pred CHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE---EEEeh-----
Confidence 345789999999888876642100 000123567889999999999999999984 33333 12211
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCceEEEEEcCCCCC------c----CChh-hHHHhh---cC--CC
Q 001998 251 EFSVAKAIIEELEGSATDLHELNSLLRRIGANIAGQKFFMVLDNLWTDD------Y----RKWE-PFRNCL---MN--GL 314 (984)
Q Consensus 251 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~------~----~~~~-~l~~~l---~~--~~ 314 (984)
..+ .....+. ....+...+.......+.+|++|++..-- . .... .+...+ .. ..
T Consensus 213 -s~l----~~k~~ge-----~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~ 282 (398)
T PTZ00454 213 -SEF----VQKYLGE-----GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQT 282 (398)
T ss_pred -HHH----HHHhcch-----hHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCC
Confidence 111 1111111 11122223333345678999999975310 0 0111 122222 11 22
Q ss_pred CCcEEEEEccchHHHh-h-cC---CCCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCCh
Q 001998 315 RGSKILLTTRKETVAR-M-ME---STDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLP 383 (984)
Q Consensus 315 ~gs~iiiTtr~~~v~~-~-~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlP 383 (984)
.+..||.||...+... . .. -...+++...+.++...+|......... ...-++.+ +++.+.|.-
T Consensus 283 ~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l-~~dvd~~~----la~~t~g~s 351 (398)
T PTZ00454 283 TNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNL-SEEVDLED----FVSRPEKIS 351 (398)
T ss_pred CCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCC-CcccCHHH----HHHHcCCCC
Confidence 4567888887654322 1 11 1456888888888888888765432221 22223444 555565543
No 197
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.83 E-value=0.031 Score=59.10 Aligned_cols=42 Identities=19% Similarity=0.128 Sum_probs=29.0
Q ss_pred EEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHH
Q 001998 209 IFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVA 255 (984)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 255 (984)
-+.+.|.+|+|||+||+.+.+ .... ..+.++++...+..+++
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~--~lg~---~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVAR--KRDR---PVMLINGDAELTTSDLV 64 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHH--HhCC---CEEEEeCCccCCHHHHh
Confidence 356899999999999999986 2222 34556666665555544
No 198
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.82 E-value=0.0035 Score=77.02 Aligned_cols=137 Identities=19% Similarity=0.248 Sum_probs=78.6
Q ss_pred CcccccHHHHHHHHHHHhcCCCCC--CCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHH
Q 001998 179 SEVRGRDEEMRTLKSMLLCQGSDQ--QTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAK 256 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~--~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 256 (984)
..++|.+..++.+.+.+.....+. ......++.++|+.|+|||.||+.+... +-+.....+=+.++...+.
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~--l~~~~~~~~~~dmse~~~~----- 638 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAEL--LYGGEQNLITINMSEFQEA----- 638 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHH--HhCCCcceEEEeHHHhhhh-----
Confidence 468999999999999886532111 1234668999999999999999887762 2111222222222221111
Q ss_pred HHHHHhcCCCCCc---ccHHHHHHHHHHHhCCCceEEEEEcCCCCCcCChhhHHHhhcCCC-----------CCcEEEEE
Q 001998 257 AIIEELEGSATDL---HELNSLLRRIGANIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGL-----------RGSKILLT 322 (984)
Q Consensus 257 ~i~~~l~~~~~~~---~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iiiT 322 (984)
.-...+.+...+. .+...+...+++ ...-+|+||++...+++.++.+...+..+. ..+-||+|
T Consensus 639 ~~~~~l~g~~~gyvg~~~~g~L~~~v~~---~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~T 715 (852)
T TIGR03345 639 HTVSRLKGSPPGYVGYGEGGVLTEAVRR---KPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLT 715 (852)
T ss_pred hhhccccCCCCCcccccccchHHHHHHh---CCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEe
Confidence 1111222222111 111223333332 445699999998777777777777665542 45667777
Q ss_pred ccc
Q 001998 323 TRK 325 (984)
Q Consensus 323 tr~ 325 (984)
|..
T Consensus 716 SNl 718 (852)
T TIGR03345 716 SNA 718 (852)
T ss_pred CCC
Confidence 764
No 199
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=96.76 E-value=0.0096 Score=67.95 Aligned_cols=167 Identities=11% Similarity=0.192 Sum_probs=90.3
Q ss_pred CCcccccHHHHHHHHHHHhcCCCC------CCCCceEEEEEEecCcchHHHHHHHHhcCcccccC-----CCeEEEEEec
Q 001998 178 VSEVRGRDEEMRTLKSMLLCQGSD------QQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINN-----FEIRVWVCVS 246 (984)
Q Consensus 178 ~~~~~Gr~~~~~~l~~~L~~~~~~------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-----F~~~~wv~~s 246 (984)
-.++.|.+..++++.+.+..+-.. .+-...+-+.++|++|.|||++|+.+++. ...+ +....|+.+.
T Consensus 181 ~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~e--L~~~i~~~~~~~~~fl~v~ 258 (512)
T TIGR03689 181 YADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANS--LAQRIGAETGDKSYFLNIK 258 (512)
T ss_pred HHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHh--hccccccccCCceeEEecc
Confidence 356889999999988876421000 00123455889999999999999999984 3222 1234455443
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH-hCCCceEEEEEcCCCCC-------cCCh-----hhHHHhhcC-
Q 001998 247 DPFDEFSVAKAIIEELEGSATDLHELNSLLRRIGAN-IAGQKFFMVLDNLWTDD-------YRKW-----EPFRNCLMN- 312 (984)
Q Consensus 247 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdvw~~~-------~~~~-----~~l~~~l~~- 312 (984)
.. + ++....+. ....+..+....++. -.+++.+|+||+++.-- ..+. ..+...+..
T Consensus 259 ~~----e----Ll~kyvGe--te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl 328 (512)
T TIGR03689 259 GP----E----LLNKYVGE--TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGV 328 (512)
T ss_pred ch----h----hcccccch--HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhccc
Confidence 21 1 11111110 011122222222222 23578999999996410 0111 122222222
Q ss_pred -CCCCcEEEEEccchHHHh-hc-C--C-CCeEeCCCCChHhHHHHHHHHh
Q 001998 313 -GLRGSKILLTTRKETVAR-MM-E--S-TDIVYVQGLSEPECWSLFRRFA 356 (984)
Q Consensus 313 -~~~gs~iiiTtr~~~v~~-~~-~--~-~~~~~l~~L~~~~~~~lf~~~~ 356 (984)
...+..||.||...+... .+ . . ...+++...+.++..++|..+.
T Consensus 329 ~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 329 ESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred ccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 123445666665543322 11 1 1 3468999999999999998875
No 200
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.76 E-value=0.037 Score=64.56 Aligned_cols=183 Identities=15% Similarity=0.134 Sum_probs=93.9
Q ss_pred ccCCcccccHHHHHHHHHHHh---cCCC--CCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCC
Q 001998 176 IDVSEVRGRDEEMRTLKSMLL---CQGS--DQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFD 250 (984)
Q Consensus 176 ~~~~~~~Gr~~~~~~l~~~L~---~~~~--~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~ 250 (984)
..-.+++|.+..++++.+.+. .... ..+....+-+.++|++|.|||+||+.+++. ....| +.++.
T Consensus 52 ~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~--~~~~~-----~~i~~--- 121 (495)
T TIGR01241 52 VTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGE--AGVPF-----FSISG--- 121 (495)
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH--cCCCe-----eeccH---
Confidence 334578898877766655443 1100 000122345789999999999999999974 22222 22221
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCceEEEEEcCCCCC----------cCChhhHH----Hhhc--CCC
Q 001998 251 EFSVAKAIIEELEGSATDLHELNSLLRRIGANIAGQKFFMVLDNLWTDD----------YRKWEPFR----NCLM--NGL 314 (984)
Q Consensus 251 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~----------~~~~~~l~----~~l~--~~~ 314 (984)
.++. ....+. ....+...+.......+.+|++||+..-. .+.+.... ..+. ...
T Consensus 122 -~~~~----~~~~g~-----~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~ 191 (495)
T TIGR01241 122 -SDFV----EMFVGV-----GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTN 191 (495)
T ss_pred -HHHH----HHHhcc-----cHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCC
Confidence 1111 111110 11223333444445677899999985310 01122211 1111 122
Q ss_pred CCcEEEEEccchHH-Hhhc----CCCCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCCh
Q 001998 315 RGSKILLTTRKETV-ARMM----ESTDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLP 383 (984)
Q Consensus 315 ~gs~iiiTtr~~~v-~~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlP 383 (984)
.+-.||.||..... -..+ .-...+.+...+.++-.++|..+...... .....+ ..+++.+.|.-
T Consensus 192 ~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~-~~~~~l----~~la~~t~G~s 260 (495)
T TIGR01241 192 TGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKL-APDVDL----KAVARRTPGFS 260 (495)
T ss_pred CCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCC-CcchhH----HHHHHhCCCCC
Confidence 34456667765432 1111 12457888888888888888876533221 111223 35777777633
No 201
>PRK07261 topology modulation protein; Provisional
Probab=96.76 E-value=0.003 Score=61.85 Aligned_cols=64 Identities=14% Similarity=0.238 Sum_probs=39.2
Q ss_pred EEEEEecCcchHHHHHHHHhcCccc-ccCCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCc
Q 001998 209 IFSMVGMGGIGKTTLAQLAYNDNDV-INNFEIRVWVCVSDPFDEFSVAKAIIEELEGSATDLHELNSLLRRIGANIAGQK 287 (984)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 287 (984)
.|.|+|++|+||||||+.+.....+ .-+.|...|-... ...+.++....+.+.+.+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~ 60 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNW---------------------QERDDDDMIADISNFLLKHD 60 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEecccc---------------------ccCCHHHHHHHHHHHHhCCC
Confidence 4789999999999999998764222 1234555552111 11223445555566666666
Q ss_pred eEEEEEcC
Q 001998 288 FFMVLDNL 295 (984)
Q Consensus 288 ~LlVlDdv 295 (984)
.|+|+.
T Consensus 61 --wIidg~ 66 (171)
T PRK07261 61 --WIIDGN 66 (171)
T ss_pred --EEEcCc
Confidence 677876
No 202
>PRK06921 hypothetical protein; Provisional
Probab=96.74 E-value=0.0064 Score=64.09 Aligned_cols=99 Identities=16% Similarity=0.276 Sum_probs=55.8
Q ss_pred eEEEEEEecCcchHHHHHHHHhcCcccccC-CCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCC
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYNDNDVINN-FEIRVWVCVSDPFDEFSVAKAIIEELEGSATDLHELNSLLRRIGANIAG 285 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 285 (984)
..-+.++|..|+|||.||..+++. +... ...++|+.. .+++..+...+ +.....+. .+ .
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~--l~~~~g~~v~y~~~------~~l~~~l~~~~----------~~~~~~~~-~~-~ 176 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANE--LMRKKGVPVLYFPF------VEGFGDLKDDF----------DLLEAKLN-RM-K 176 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HhhhcCceEEEEEH------HHHHHHHHHHH----------HHHHHHHH-Hh-c
Confidence 456889999999999999999984 4333 345667754 23333332221 11111222 22 2
Q ss_pred CceEEEEEcCC-----CCCcCChhh--HHHhhcCC-CCCcEEEEEccc
Q 001998 286 QKFFMVLDNLW-----TDDYRKWEP--FRNCLMNG-LRGSKILLTTRK 325 (984)
Q Consensus 286 kr~LlVlDdvw-----~~~~~~~~~--l~~~l~~~-~~gs~iiiTtr~ 325 (984)
+-=||||||+. .+...+|.. +...+... ..+..+||||..
T Consensus 177 ~~dlLiIDDl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~tIitsn~ 224 (266)
T PRK06921 177 KVEVLFIDDLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKPILISSEL 224 (266)
T ss_pred CCCEEEEeccccccCCCccCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 34599999993 222345553 33333221 234568888874
No 203
>PRK06526 transposase; Provisional
Probab=96.74 E-value=0.0025 Score=66.55 Aligned_cols=100 Identities=14% Similarity=0.102 Sum_probs=52.9
Q ss_pred EEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCc
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAIIEELEGSATDLHELNSLLRRIGANIAGQK 287 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 287 (984)
.-+.++|.+|+|||+||..+.+.. ....+ .+.|+ +..+++..+...... ... ...+... .+.
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a-~~~g~-~v~f~------t~~~l~~~l~~~~~~-----~~~---~~~l~~l--~~~ 160 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRA-CQAGH-RVLFA------TAAQWVARLAAAHHA-----GRL---QAELVKL--GRY 160 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHH-HHCCC-chhhh------hHHHHHHHHHHHHhc-----CcH---HHHHHHh--ccC
Confidence 357899999999999999988732 12222 33443 333444444332111 111 1222222 234
Q ss_pred eEEEEEcCCCCCcCChh--hHHHhhcC-CCCCcEEEEEccch
Q 001998 288 FFMVLDNLWTDDYRKWE--PFRNCLMN-GLRGSKILLTTRKE 326 (984)
Q Consensus 288 ~LlVlDdvw~~~~~~~~--~l~~~l~~-~~~gs~iiiTtr~~ 326 (984)
-+||+||+.......|. .+...+.. ...+ .+|+||...
T Consensus 161 dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~-s~IitSn~~ 201 (254)
T PRK06526 161 PLLIVDEVGYIPFEPEAANLFFQLVSSRYERA-SLIVTSNKP 201 (254)
T ss_pred CEEEEcccccCCCCHHHHHHHHHHHHHHHhcC-CEEEEcCCC
Confidence 58999999654333333 23333322 1234 488888753
No 204
>PRK09183 transposase/IS protein; Provisional
Probab=96.74 E-value=0.0058 Score=64.22 Aligned_cols=100 Identities=14% Similarity=0.174 Sum_probs=52.9
Q ss_pred EEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCc
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAIIEELEGSATDLHELNSLLRRIGANIAGQK 287 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 287 (984)
..+.|+|..|+|||+||..+.+. ....-..+.++. ..++...+...... .. +...+++.+ .+.
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~--a~~~G~~v~~~~------~~~l~~~l~~a~~~-----~~---~~~~~~~~~-~~~ 165 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYE--AVRAGIKVRFTT------AADLLLQLSTAQRQ-----GR---YKTTLQRGV-MAP 165 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHH--HHHcCCeEEEEe------HHHHHHHHHHHHHC-----Cc---HHHHHHHHh-cCC
Confidence 35779999999999999999763 212222334443 23344333222111 01 122232222 344
Q ss_pred eEEEEEcCCCCCcCChhh--HHHhhcCC-CCCcEEEEEccc
Q 001998 288 FFMVLDNLWTDDYRKWEP--FRNCLMNG-LRGSKILLTTRK 325 (984)
Q Consensus 288 ~LlVlDdvw~~~~~~~~~--l~~~l~~~-~~gs~iiiTtr~ 325 (984)
-++|+||+.......+.. +...+... ..++ +|+||..
T Consensus 166 dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~~s-~iiTsn~ 205 (259)
T PRK09183 166 RLLIIDEIGYLPFSQEEANLFFQVIAKRYEKGS-MILTSNL 205 (259)
T ss_pred CEEEEcccccCCCChHHHHHHHHHHHHHHhcCc-EEEecCC
Confidence 599999997543333432 33333221 2344 8888875
No 205
>CHL00176 ftsH cell division protein; Validated
Probab=96.73 E-value=0.02 Score=67.76 Aligned_cols=179 Identities=13% Similarity=0.140 Sum_probs=95.9
Q ss_pred CCcccccHHHHHHHHHHH---hcCCC--CCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHH
Q 001998 178 VSEVRGRDEEMRTLKSML---LCQGS--DQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEF 252 (984)
Q Consensus 178 ~~~~~Gr~~~~~~l~~~L---~~~~~--~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 252 (984)
-.++.|.++.++++.+.+ ..... ..+....+-+.++|.+|.|||+||+.+++. .... |+.++. .
T Consensus 182 f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e--~~~p-----~i~is~----s 250 (638)
T CHL00176 182 FRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGE--AEVP-----FFSISG----S 250 (638)
T ss_pred HHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH--hCCC-----eeeccH----H
Confidence 356889887776665543 22210 000122456889999999999999999873 2222 232221 1
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCceEEEEEcCCCCC----------cCChhh-HHHhhc---C--CCCC
Q 001998 253 SVAKAIIEELEGSATDLHELNSLLRRIGANIAGQKFFMVLDNLWTDD----------YRKWEP-FRNCLM---N--GLRG 316 (984)
Q Consensus 253 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~----------~~~~~~-l~~~l~---~--~~~g 316 (984)
++. ....+ .....+...+.......+.+|++||+..-. ...+.. +...+. . ...+
T Consensus 251 ~f~----~~~~g-----~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ 321 (638)
T CHL00176 251 EFV----EMFVG-----VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKG 321 (638)
T ss_pred HHH----HHhhh-----hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCC
Confidence 111 11101 011223334455556788999999995310 111222 222221 1 2345
Q ss_pred cEEEEEccchHHHh-hc-C---CCCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCC
Q 001998 317 SKILLTTRKETVAR-MM-E---STDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKG 381 (984)
Q Consensus 317 s~iiiTtr~~~v~~-~~-~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~G 381 (984)
-.||.||...+... .+ . -...+.+...+.++-.++++.++..... .. ......+++.+.|
T Consensus 322 ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~-~~----d~~l~~lA~~t~G 386 (638)
T CHL00176 322 VIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL-SP----DVSLELIARRTPG 386 (638)
T ss_pred eeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc-ch----hHHHHHHHhcCCC
Confidence 56777776644322 22 1 1357788888888888888887643111 11 1223457777777
No 206
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.72 E-value=9e-05 Score=83.53 Aligned_cols=122 Identities=20% Similarity=0.148 Sum_probs=72.8
Q ss_pred ceeEEEEEecCcccccccccCCCceeEEeccCCCcchhhhHHhhhccccccee-cCCCCccccCcccccccCccceEEec
Q 001998 544 KLRHSILVLDKVASFPVSIFNAKKLRSLLIHSPLEVLSPVLKGLFDHLTYGED-DGGENTVHDIPREIEKLIHLRSLRLA 622 (984)
Q Consensus 544 ~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lrv-~l~~~~i~~lp~~i~~L~~Lr~L~L~ 622 (984)
++...++..|.+..+..++.-++.|++|+++.|. +.. . +.+..+..|+. |+++|.+..+|.-=..--+|..|.|+
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk--~~~-v-~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNK--FTK-V-DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLR 240 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhh--hhh-h-HHHHhcccccccccccchhccccccchhhhhheeeeec
Confidence 3334444444444334445556777778877776 222 1 24566667777 77777777766421122237777777
Q ss_pred CCCccccchhhccCCcccEEeccccccccc---ccccccCCCCCCeEEeccCC
Q 001998 623 GLKIEELPETCCKLFNLQTLDINECYRLKR---LPQGVGSLVNLRHLVVSLNG 672 (984)
Q Consensus 623 ~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~---lP~~i~~L~~L~~L~l~~~~ 672 (984)
+|.++++- .|.+|++|+.||++.|- +.. |-. ++.|..|+.|++.||+
T Consensus 241 nN~l~tL~-gie~LksL~~LDlsyNl-l~~hseL~p-LwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 241 NNALTTLR-GIENLKSLYGLDLSYNL-LSEHSELEP-LWSLSSLIVLWLEGNP 290 (1096)
T ss_pred ccHHHhhh-hHHhhhhhhccchhHhh-hhcchhhhH-HHHHHHHHHHhhcCCc
Confidence 77777663 56677777777777765 332 222 4666677777777773
No 207
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.71 E-value=0.0043 Score=61.73 Aligned_cols=133 Identities=23% Similarity=0.195 Sum_probs=63.7
Q ss_pred cccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCC---------CHH
Q 001998 182 RGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPF---------DEF 252 (984)
Q Consensus 182 ~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~---------~~~ 252 (984)
..+..+....++.|.. ..++.+.|.+|.|||.||....-+.-..+.|+..+++.-.-+. +..
T Consensus 3 ~p~~~~Q~~~~~al~~---------~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~ 73 (205)
T PF02562_consen 3 KPKNEEQKFALDALLN---------NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLE 73 (205)
T ss_dssp ---SHHHHHHHHHHHH----------SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS-----
T ss_pred cCCCHHHHHHHHHHHh---------CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHH
Confidence 3456677777777762 3488999999999999998777654445888888887422110 000
Q ss_pred H----HHHHHHHHhcCCCCCcccHHHHHHHH------HHHhCCCc---eEEEEEcCCCCCcCChhhHHHhhcCCCCCcEE
Q 001998 253 S----VAKAIIEELEGSATDLHELNSLLRRI------GANIAGQK---FFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKI 319 (984)
Q Consensus 253 ~----~~~~i~~~l~~~~~~~~~~~~~~~~l------~~~l~~kr---~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~i 319 (984)
+ .+..+...+..-. .....+.+.+.= -.+++|+. .+||+|++.+... .++...+-..+.||||
T Consensus 74 eK~~p~~~p~~d~l~~~~-~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~---~~~k~ilTR~g~~ski 149 (205)
T PF02562_consen 74 EKMEPYLRPIYDALEELF-GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTP---EELKMILTRIGEGSKI 149 (205)
T ss_dssp ----TTTHHHHHHHTTTS--TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--H---HHHHHHHTTB-TT-EE
T ss_pred HHHHHHHHHHHHHHHHHh-ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCH---HHHHHHHcccCCCcEE
Confidence 0 1111111111100 111122221100 03344543 4999999976543 3455556666789999
Q ss_pred EEEccchH
Q 001998 320 LLTTRKET 327 (984)
Q Consensus 320 iiTtr~~~ 327 (984)
|++--..+
T Consensus 150 i~~GD~~Q 157 (205)
T PF02562_consen 150 IITGDPSQ 157 (205)
T ss_dssp EEEE----
T ss_pred EEecCcee
Confidence 99876543
No 208
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.70 E-value=0.00069 Score=80.64 Aligned_cols=128 Identities=22% Similarity=0.134 Sum_probs=83.0
Q ss_pred CCceeEEeccCCCcchhhhHHhhhccccccee-cCCCCcc--ccCcccccccCccceEEecCCCccccchhhccCCcccE
Q 001998 565 AKKLRSLLIHSPLEVLSPVLKGLFDHLTYGED-DGGENTV--HDIPREIEKLIHLRSLRLAGLKIEELPETCCKLFNLQT 641 (984)
Q Consensus 565 ~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lrv-~l~~~~i--~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~ 641 (984)
-.+|+.|++.|.......++..+-.-|+.|+. .+++-.+ .++..-..++++|+.||+|+|.|+.+ ..+++|+|||+
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV 199 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence 36799999988765445545554445555555 4444332 22344455789999999999999988 78999999999
Q ss_pred Eeccccccccccc--ccccCCCCCCeEEeccCCCcccC--Cc----cCCCCCCCCcCCceE
Q 001998 642 LDINECYRLKRLP--QGVGSLVNLRHLVVSLNGDLDYL--PK----GVERLTSLRTLREFV 694 (984)
Q Consensus 642 L~L~~~~~l~~lP--~~i~~L~~L~~L~l~~~~~l~~~--p~----~i~~l~~L~~L~~~~ 694 (984)
|.+++=. +..-+ ..+.+|++|++||++........ .. --..|++|+.|+.++
T Consensus 200 L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 200 LSMRNLE-FESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG 259 (699)
T ss_pred HhccCCC-CCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence 9888644 33222 24678999999999875332211 10 012366777776654
No 209
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.69 E-value=0.071 Score=58.70 Aligned_cols=167 Identities=11% Similarity=0.158 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccc--cCC---CeEEEEEecCCCCHHHHHHHHH
Q 001998 185 DEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVI--NNF---EIRVWVCVSDPFDEFSVAKAII 259 (984)
Q Consensus 185 ~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~F---~~~~wv~~s~~~~~~~~~~~i~ 259 (984)
+.-.+.+.+.+.... .....+|+|.|.=|.||||+.+.+.+..+-. ..+ ..-+|-.....--...++.+|.
T Consensus 2 ~~~a~~la~~I~~~~----~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w~~~~~~~~~~~~~~~l~ 77 (325)
T PF07693_consen 2 KPYAKALAEIIKNPD----SDDPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNAWEYDGEDDLWASFLEELF 77 (325)
T ss_pred hHHHHHHHHHHhccC----CCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEccccCCCcchHHHHHHHHHH
Confidence 445566777776543 2467899999999999999999988743222 112 1223333332222445555555
Q ss_pred HHhcCCC------------------------------C------------------------------------CcccHH
Q 001998 260 EELEGSA------------------------------T------------------------------------DLHELN 273 (984)
Q Consensus 260 ~~l~~~~------------------------------~------------------------------------~~~~~~ 273 (984)
.++.... . ...+.+
T Consensus 78 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (325)
T PF07693_consen 78 DQLEKHFGSKKIKLYAKKKLKSLKIKFKIKINLSKAIPLALIGLPALILAVAIAKLKAELKNAFKSLEEKFLKKLKKEVE 157 (325)
T ss_pred HHHHHhcCccchhHHHhhhhhhhhceeeeeeecceeehHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhHHHH
Confidence 5442100 0 000111
Q ss_pred HHHHHHHHHh--CCCceEEEEEcCCCCCcCChhhHHHhhcC--CCCCcEEEEEccchHHHhhcCC---------------
Q 001998 274 SLLRRIGANI--AGQKFFMVLDNLWTDDYRKWEPFRNCLMN--GLRGSKILLTTRKETVARMMES--------------- 334 (984)
Q Consensus 274 ~~~~~l~~~l--~~kr~LlVlDdvw~~~~~~~~~l~~~l~~--~~~gs~iiiTtr~~~v~~~~~~--------------- 334 (984)
+....+.+.+ .++|.+||+||++.-+++....+...+.. ..++..+|+..-.+.+...+..
T Consensus 158 ~~~~~~~~~l~~~~~~iViiIDdLDR~~~~~i~~~l~~ik~~~~~~~i~~Il~~D~~~l~~ai~~~~~~~~~~~~~~~yL 237 (325)
T PF07693_consen 158 ELISKIKKKLKESKKRIVIIIDDLDRCSPEEIVELLEAIKLLLDFPNIIFILAFDPEILEKAIEKNYGEGFDEIDGREYL 237 (325)
T ss_pred HHHHHHHHhhhcCCceEEEEEcchhcCCcHHHHHHHHHHHHhcCCCCeEEEEEecHHHHHHHHHhhcCcccccccHHHHH
Confidence 2334444555 35899999999977555444444333332 2367778887776666554322
Q ss_pred ----CCeEeCCCCChHhHHHHHHHH
Q 001998 335 ----TDIVYVQGLSEPECWSLFRRF 355 (984)
Q Consensus 335 ----~~~~~l~~L~~~~~~~lf~~~ 355 (984)
..++.+++.+..+-..+|...
T Consensus 238 eKiiq~~~~lP~~~~~~~~~~~~~~ 262 (325)
T PF07693_consen 238 EKIIQVPFSLPPPSPSDLERYLNEL 262 (325)
T ss_pred HhhcCeEEEeCCCCHHHHHHHHHHH
Confidence 125667777766655555444
No 210
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.68 E-value=0.0062 Score=68.93 Aligned_cols=189 Identities=17% Similarity=0.221 Sum_probs=113.0
Q ss_pred CcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHH
Q 001998 179 SEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAI 258 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 258 (984)
++++|-+.-...|...+.... -..--...|.-|+||||+|+-++.-.--.. | ....++......++|
T Consensus 16 ~evvGQe~v~~~L~nal~~~r------i~hAYlfsG~RGvGKTt~Ari~AkalNC~~------~-~~~ePC~~C~~Ck~I 82 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGR------IAHAYLFSGPRGVGKTTIARILAKALNCEN------G-PTAEPCGKCISCKEI 82 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCc------chhhhhhcCCCCcCchhHHHHHHHHhcCCC------C-CCCCcchhhhhhHhh
Confidence 467999999999999987543 244456789999999999988765211000 0 112223333333333
Q ss_pred HHHh--c------CCCCCcccHHHHHHHHHHHh-CCCceEEEEEcCCCCCcCChhhHHHhhcCCCCCcEEEEEccc-hHH
Q 001998 259 IEEL--E------GSATDLHELNSLLRRIGANI-AGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILLTTRK-ETV 328 (984)
Q Consensus 259 ~~~l--~------~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~-~~v 328 (984)
-..- . .+.....++.++.+..+-.= ++|-=..|+|.|.......|..+...+-.....-+.|+.|.+ ..+
T Consensus 83 ~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Ki 162 (515)
T COG2812 83 NEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKI 162 (515)
T ss_pred hcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcC
Confidence 2220 0 01112233333333332211 244448899999776667888887777665556665655555 444
Q ss_pred Hhh-cCCCCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCChH
Q 001998 329 ARM-MESTDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLPL 384 (984)
Q Consensus 329 ~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlPL 384 (984)
... ......|.++.++.++....+...+-......+ .+....|++..+|..-
T Consensus 163 p~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e----~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 163 PNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIE----EDALSLIARAAEGSLR 215 (515)
T ss_pred chhhhhccccccccCCCHHHHHHHHHHHHHhcCCccC----HHHHHHHHHHcCCChh
Confidence 333 345789999999999999988887754443333 3334447777777554
No 211
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.64 E-value=0.00093 Score=67.75 Aligned_cols=84 Identities=19% Similarity=0.258 Sum_probs=43.5
Q ss_pred ccccccccccccCCCCcccccCCCCcccCCcccEEeeecCcCCCCCC--cCCCCCCCcCeEEeccCcchHHhhccCCCCC
Q 001998 869 AFPKLKELTLFHLDGCEEWDFGKEDVIIMPQLCYLDIRFCRKLKSLP--DQLLQSSTLEKLRIIRAPILRERFKKDTGED 946 (984)
Q Consensus 869 ~f~~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp--~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~ 946 (984)
-||++..+-+-.+|- +..+. ......+|.+--|.+..+. +.++. +.+...+.|.-|.+.++|.....- +++.
T Consensus 197 ~Fpnv~sv~v~e~Pl-K~~s~-ek~se~~p~~~~LnL~~~~-idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~---~~er 270 (418)
T KOG2982|consen 197 IFPNVNSVFVCEGPL-KTESS-EKGSEPFPSLSCLNLGANN-IDSWASVDALNGFPQLVDLRVSENPLSDPLR---GGER 270 (418)
T ss_pred hcccchheeeecCcc-cchhh-cccCCCCCcchhhhhcccc-cccHHHHHHHcCCchhheeeccCCccccccc---CCcc
Confidence 456665555544421 11111 1123345666666666653 44432 235567788888888888654221 1232
Q ss_pred -ccccccccceee
Q 001998 947 -WSKISHIRDIQI 958 (984)
Q Consensus 947 -~~~i~~i~~l~~ 958 (984)
+--|+.++++++
T Consensus 271 r~llIaRL~~v~v 283 (418)
T KOG2982|consen 271 RFLLIARLTKVQV 283 (418)
T ss_pred eEEEEeeccceEE
Confidence 235677777765
No 212
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.045 Score=60.33 Aligned_cols=161 Identities=17% Similarity=0.243 Sum_probs=94.0
Q ss_pred CceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhC
Q 001998 205 NTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAIIEELEGSATDLHELNSLLRRIGANIA 284 (984)
Q Consensus 205 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 284 (984)
..+.-+.+.|.+|+|||+||..++.+ ..|..+=-++-..-. + -.+......+........+
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~----S~FPFvKiiSpe~mi--------------G-~sEsaKc~~i~k~F~DAYk 596 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALS----SDFPFVKIISPEDMI--------------G-LSESAKCAHIKKIFEDAYK 596 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhh----cCCCeEEEeChHHcc--------------C-ccHHHHHHHHHHHHHHhhc
Confidence 45677889999999999999999864 556554333211000 0 0111222334444555556
Q ss_pred CCceEEEEEcCCCCCcCChhhHHH------------hhcCC-CCCcE--EEEEccchHHHhhcCC----CCeEeCCCCCh
Q 001998 285 GQKFFMVLDNLWTDDYRKWEPFRN------------CLMNG-LRGSK--ILLTTRKETVARMMES----TDIVYVQGLSE 345 (984)
Q Consensus 285 ~kr~LlVlDdvw~~~~~~~~~l~~------------~l~~~-~~gs~--iiiTtr~~~v~~~~~~----~~~~~l~~L~~ 345 (984)
..--.||+||++. .-+|-.+.+ .+... .+|-| |+-||....|...|+- ...+.+..++.
T Consensus 597 S~lsiivvDdiEr--LiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~ 674 (744)
T KOG0741|consen 597 SPLSIIVVDDIER--LLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTT 674 (744)
T ss_pred CcceEEEEcchhh--hhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCc
Confidence 7778999999943 344543322 23222 23333 5557777888887765 45788888887
Q ss_pred -HhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHHHHhh
Q 001998 346 -PECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLPLAAKTIGSLL 393 (984)
Q Consensus 346 -~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~~l 393 (984)
++..+.++..-. -.+.+...++++...+| +-.+|+-+-.++
T Consensus 675 ~~~~~~vl~~~n~-----fsd~~~~~~~~~~~~~~--~~vgIKklL~li 716 (744)
T KOG0741|consen 675 GEQLLEVLEELNI-----FSDDEVRAIAEQLLSKK--VNVGIKKLLMLI 716 (744)
T ss_pred hHHHHHHHHHccC-----CCcchhHHHHHHHhccc--cchhHHHHHHHH
Confidence 777777766431 12234566666666666 333444443333
No 213
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.62 E-value=0.0063 Score=75.27 Aligned_cols=136 Identities=16% Similarity=0.283 Sum_probs=78.6
Q ss_pred CcccccHHHHHHHHHHHhcCCCCC--CCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHH
Q 001998 179 SEVRGRDEEMRTLKSMLLCQGSDQ--QTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAK 256 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~--~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 256 (984)
..++|.+..++.+...+.....+. .+.....+.++|+.|+|||+||+.+.+. .-+.-...+-+..+...+...+.+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~--l~~~~~~~~~~d~s~~~~~~~~~~ 586 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASY--FFGSEDAMIRLDMSEYMEKHTVSK 586 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHH--hcCCccceEEEEchhccccccHHH
Confidence 568999999999998886432111 1233456779999999999999988762 211112233344443222111111
Q ss_pred HHHHHhcCCCCC---cccHHHHHHHHHHHhCCCce-EEEEEcCCCCCcCChhhHHHhhcCC-----------CCCcEEEE
Q 001998 257 AIIEELEGSATD---LHELNSLLRRIGANIAGQKF-FMVLDNLWTDDYRKWEPFRNCLMNG-----------LRGSKILL 321 (984)
Q Consensus 257 ~i~~~l~~~~~~---~~~~~~~~~~l~~~l~~kr~-LlVlDdvw~~~~~~~~~l~~~l~~~-----------~~gs~iii 321 (984)
+.+.+.+ ..+... +.+.++.++| +|+||++...+.+.++.+...+..+ ...+-||+
T Consensus 587 -----l~g~~~gyvg~~~~~~----l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~ 657 (821)
T CHL00095 587 -----LIGSPPGYVGYNEGGQ----LTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIM 657 (821)
T ss_pred -----hcCCCCcccCcCccch----HHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEE
Confidence 1122111 112222 3344444554 8889999877777778777776653 13455677
Q ss_pred Eccc
Q 001998 322 TTRK 325 (984)
Q Consensus 322 Ttr~ 325 (984)
||..
T Consensus 658 Tsn~ 661 (821)
T CHL00095 658 TSNL 661 (821)
T ss_pred eCCc
Confidence 7764
No 214
>PRK04132 replication factor C small subunit; Provisional
Probab=96.62 E-value=0.037 Score=66.98 Aligned_cols=155 Identities=15% Similarity=0.032 Sum_probs=97.6
Q ss_pred cCcchHHHHHHHHhcCcccccCC-CeEEEEEecCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCceEEEEE
Q 001998 215 MGGIGKTTLAQLAYNDNDVINNF-EIRVWVCVSDPFDEFSVAKAIIEELEGSATDLHELNSLLRRIGANIAGQKFFMVLD 293 (984)
Q Consensus 215 ~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlD 293 (984)
+-++||||+|..++++. ....+ ..++-+++|+..... ..++++..+...... -..+.-++|+|
T Consensus 574 Ph~lGKTT~A~ala~~l-~g~~~~~~~lElNASd~rgid-~IR~iIk~~a~~~~~--------------~~~~~KVvIID 637 (846)
T PRK04132 574 PTVLHNTTAALALAREL-FGENWRHNFLELNASDERGIN-VIREKVKEFARTKPI--------------GGASFKIIFLD 637 (846)
T ss_pred CCcccHHHHHHHHHHhh-hcccccCeEEEEeCCCcccHH-HHHHHHHHHHhcCCc--------------CCCCCEEEEEE
Confidence 67899999999999842 12223 246677777655554 334444433211100 01245799999
Q ss_pred cCCCCCcCChhhHHHhhcCCCCCcEEEEEccch-HHHhhc-CCCCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHH
Q 001998 294 NLWTDDYRKWEPFRNCLMNGLRGSKILLTTRKE-TVARMM-ESTDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEI 371 (984)
Q Consensus 294 dvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~ 371 (984)
++...+.+....|...+.......++|++|.+. .+...+ .....+.+.+++.++....+...+...+.... .+.
T Consensus 638 EaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i~----~e~ 713 (846)
T PRK04132 638 EADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELT----EEG 713 (846)
T ss_pred CcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCCC----HHH
Confidence 998766666777777776655567777766654 333222 33678999999999998888776543222112 345
Q ss_pred HHHHHHhcCCChHHHHHH
Q 001998 372 GRGIVRKCKGLPLAAKTI 389 (984)
Q Consensus 372 ~~~i~~~~~GlPLai~~~ 389 (984)
...|++.++|-+-.+..+
T Consensus 714 L~~Ia~~s~GDlR~AIn~ 731 (846)
T PRK04132 714 LQAILYIAEGDMRRAINI 731 (846)
T ss_pred HHHHHHHcCCCHHHHHHH
Confidence 667999999988555443
No 215
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.57 E-value=0.062 Score=58.87 Aligned_cols=210 Identities=11% Similarity=0.106 Sum_probs=122.4
Q ss_pred cHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHH-HHHhcCcccccCCCeEEEEEecCC---CCHHHHHHHHH
Q 001998 184 RDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLA-QLAYNDNDVINNFEIRVWVCVSDP---FDEFSVAKAII 259 (984)
Q Consensus 184 r~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~~~wv~~s~~---~~~~~~~~~i~ 259 (984)
|.+..++|..||.... -..|.|.|+-|.||++|+ .++.++.+. ++.+.+.+- .+-..+.+.++
T Consensus 1 R~e~~~~L~~wL~e~~-------~TFIvV~GPrGSGK~elV~d~~L~~r~~------vL~IDC~~i~~ar~D~~~I~~lA 67 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENP-------NTFIVVQGPRGSGKRELVMDHVLKDRKN------VLVIDCDQIVKARGDAAFIKNLA 67 (431)
T ss_pred CchHHHHHHHHHhcCC-------CeEEEEECCCCCCccHHHHHHHHhCCCC------EEEEEChHhhhccChHHHHHHHH
Confidence 5678899999997544 458999999999999999 777765322 555544321 23334445555
Q ss_pred HHhc-----------------------CCCCCc-cc-HHHHHH-------HHHH-------------------Hh---CC
Q 001998 260 EELE-----------------------GSATDL-HE-LNSLLR-------RIGA-------------------NI---AG 285 (984)
Q Consensus 260 ~~l~-----------------------~~~~~~-~~-~~~~~~-------~l~~-------------------~l---~~ 285 (984)
.+++ ++..+. .. ..++.. .|++ +| ..
T Consensus 68 ~qvGY~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe 147 (431)
T PF10443_consen 68 SQVGYFPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPE 147 (431)
T ss_pred HhcCCCcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCc
Confidence 4442 211110 11 111111 1111 01 01
Q ss_pred CceEEEEEcCCCCC---cCChhhHHHh---hcCCCCCcEEEEEccchHHHh----hc--CCCCeEeCCCCChHhHHHHHH
Q 001998 286 QKFFMVLDNLWTDD---YRKWEPFRNC---LMNGLRGSKILLTTRKETVAR----MM--ESTDIVYVQGLSEPECWSLFR 353 (984)
Q Consensus 286 kr~LlVlDdvw~~~---~~~~~~l~~~---l~~~~~gs~iiiTtr~~~v~~----~~--~~~~~~~l~~L~~~~~~~lf~ 353 (984)
+|=+||+|+.-... .-.|+.+... +- ..+=.+||++|-+..... .+ ...+.+.|...+.+.|.++..
T Consensus 148 ~~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv-~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~ 226 (431)
T PF10443_consen 148 RRPVVVIDNFLHKAEENDFIYDKLAEWAASLV-QNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVL 226 (431)
T ss_pred cCCEEEEcchhccCcccchHHHHHHHHHHHHH-hcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHH
Confidence 25589999985422 1122333221 22 234568999888755444 33 224577899999999999998
Q ss_pred HHhcCCCCC------------CC----chhHHHHHHHHHHhcCCChHHHHHHHHhhccCCCHH-HHHHHHh
Q 001998 354 RFAFSGRTP------------LE----CDQLEEIGRGIVRKCKGLPLAAKTIGSLLQFKRTKE-EWQSVLD 407 (984)
Q Consensus 354 ~~~~~~~~~------------~~----~~~l~~~~~~i~~~~~GlPLai~~~~~~l~~~~~~~-~w~~~l~ 407 (984)
.+.-..... .. ......-....++.+||=-.-+..+++.++...+++ .-..+.+
T Consensus 227 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~~Av~~iI~ 297 (431)
T PF10443_consen 227 SQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPEEAVEEIIS 297 (431)
T ss_pred HHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 876433110 00 012333345588999999999999999998887654 3444444
No 216
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.56 E-value=0.079 Score=57.79 Aligned_cols=184 Identities=10% Similarity=0.055 Sum_probs=101.5
Q ss_pred HHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcC-----ccc---ccCCCeEEEEEecCCCCHHHHHHH
Q 001998 186 EEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYND-----NDV---INNFEIRVWVCVSDPFDEFSVAKA 257 (984)
Q Consensus 186 ~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~-----~~~---~~~F~~~~wv~~s~~~~~~~~~~~ 257 (984)
..-+++...+..+. -..-+.+.|..|+||+|+|..+... +.- .+.-...-++.....+|+..+..+
T Consensus 9 ~~~~~l~~~~~~~r------l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~ 82 (334)
T PRK07993 9 PDYEQLVGSYQAGR------GHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPE 82 (334)
T ss_pred HHHHHHHHHHHcCC------cceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecc
Confidence 34455666554322 3567889999999999999776542 110 000000000111111111110000
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHH-HhCCCceEEEEEcCCCCCcCChhhHHHhhcCCCCCcEEEEEccch-HHHhh-cCC
Q 001998 258 IIEELEGSATDLHELNSLLRRIGA-NIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILLTTRKE-TVARM-MES 334 (984)
Q Consensus 258 i~~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~-~v~~~-~~~ 334 (984)
-........++.++.+.+.. -..+++=++|+|+++..+...-..+...+-.-..++.+|++|.+. .+... ...
T Consensus 83 ----~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSR 158 (334)
T PRK07993 83 ----KGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSR 158 (334)
T ss_pred ----cccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhc
Confidence 00001111223333333322 123566699999997766666777888887766777877777764 34433 334
Q ss_pred CCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCChHHHHH
Q 001998 335 TDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLPLAAKT 388 (984)
Q Consensus 335 ~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~ 388 (984)
...+.+.+++.+++.+.+.... + .. .+.+..++..++|.|..+..
T Consensus 159 Cq~~~~~~~~~~~~~~~L~~~~-~----~~----~~~a~~~~~la~G~~~~Al~ 203 (334)
T PRK07993 159 CRLHYLAPPPEQYALTWLSREV-T----MS----QDALLAALRLSAGAPGAALA 203 (334)
T ss_pred cccccCCCCCHHHHHHHHHHcc-C----CC----HHHHHHHHHHcCCCHHHHHH
Confidence 5688999999999988886532 1 11 22356689999999975443
No 217
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.56 E-value=0.016 Score=69.82 Aligned_cols=134 Identities=16% Similarity=0.211 Sum_probs=76.0
Q ss_pred cccccHHHHHHHHHHHhcCCCCC--CCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHH
Q 001998 180 EVRGRDEEMRTLKSMLLCQGSDQ--QTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKA 257 (984)
Q Consensus 180 ~~~Gr~~~~~~l~~~L~~~~~~~--~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 257 (984)
.++|.+..++.+...+.....+. .+.....+.++|+.|+|||++|+.+... ... ..+.++++...... .
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~--l~~---~~i~id~se~~~~~----~ 529 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA--LGI---ELLRFDMSEYMERH----T 529 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHH--hCC---CcEEeechhhcccc----c
Confidence 58899999999999887432111 1234567899999999999999999873 222 23344444322211 1
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHHHhCC-CceEEEEEcCCCCCcCChhhHHHhhcCCC-----------CCcEEEEEcc
Q 001998 258 IIEELEGSATDLHELNSLLRRIGANIAG-QKFFMVLDNLWTDDYRKWEPFRNCLMNGL-----------RGSKILLTTR 324 (984)
Q Consensus 258 i~~~l~~~~~~~~~~~~~~~~l~~~l~~-kr~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iiiTtr 324 (984)
...+.+.+.+....+ ....+.+.+.. ..-+|+||++.....+.+..+...+..+. ..+-||+||.
T Consensus 530 -~~~LiG~~~gyvg~~-~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN 606 (758)
T PRK11034 530 -VSRLIGAPPGYVGFD-QGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTN 606 (758)
T ss_pred -HHHHcCCCCCccccc-ccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCC
Confidence 122222221111100 00112222333 34599999998777777777777665431 2334777775
No 218
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.55 E-value=0.011 Score=64.11 Aligned_cols=101 Identities=19% Similarity=0.177 Sum_probs=63.5
Q ss_pred HHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCccccc-CCCe-EEEEEecC-CCCHHHHHHHHHHHhc
Q 001998 187 EMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVIN-NFEI-RVWVCVSD-PFDEFSVAKAIIEELE 263 (984)
Q Consensus 187 ~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~~-~~wv~~s~-~~~~~~~~~~i~~~l~ 263 (984)
-..++++.+..-. .-..+.|+|..|+|||||++.+.+. +.. +-+. .+|+.+.+ ...+.++.+.+...+.
T Consensus 119 ~~~RvID~l~PiG------kGQR~LIvG~pGtGKTTLl~~la~~--i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vv 190 (380)
T PRK12608 119 LSMRVVDLVAPIG------KGQRGLIVAPPRAGKTVLLQQIAAA--VAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVY 190 (380)
T ss_pred hhHhhhhheeecC------CCceEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEE
Confidence 3345777776433 1234589999999999999998874 322 3344 36766664 4578888888888776
Q ss_pred CCCCCcccHH-----HHHHHHHHHh--CCCceEEEEEcC
Q 001998 264 GSATDLHELN-----SLLRRIGANI--AGQKFFMVLDNL 295 (984)
Q Consensus 264 ~~~~~~~~~~-----~~~~~l~~~l--~~kr~LlVlDdv 295 (984)
....+..... .....+.+++ ++++.+||+|++
T Consensus 191 ast~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsl 229 (380)
T PRK12608 191 ASTFDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSL 229 (380)
T ss_pred eecCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 5432221111 1111222222 589999999998
No 219
>PRK04296 thymidine kinase; Provisional
Probab=96.51 E-value=0.0061 Score=60.91 Aligned_cols=113 Identities=10% Similarity=-0.011 Sum_probs=62.2
Q ss_pred EEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCC--cccHHHHHHHHHHHhCC
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAIIEELEGSATD--LHELNSLLRRIGANIAG 285 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~l~~ 285 (984)
.++.|+|..|.||||+|..+... ...+...++.+ ...++.+.....++++++..... ....+++...+.+ ..+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~--~~~~g~~v~i~--k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~ 77 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYN--YEERGMKVLVF--KPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGE 77 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHH--HHHcCCeEEEE--eccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCC
Confidence 46789999999999999887763 33333333433 12223333344455555432211 2234455555555 334
Q ss_pred CceEEEEEcCCCCCcCChhhHHHhhcCCCCCcEEEEEccchH
Q 001998 286 QKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILLTTRKET 327 (984)
Q Consensus 286 kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~ 327 (984)
+.-+||+|.+.--+.++..++...+ ...|..||+|.++.+
T Consensus 78 ~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 78 KIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTD 117 (190)
T ss_pred CCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCcc
Confidence 4458999999432212122233322 245778999998744
No 220
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.50 E-value=0.0066 Score=65.74 Aligned_cols=102 Identities=17% Similarity=0.253 Sum_probs=56.8
Q ss_pred EEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCc
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAIIEELEGSATDLHELNSLLRRIGANIAGQK 287 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 287 (984)
.-+.++|..|+|||.||..+++. ....-..++|+++. +++..+...-. . ...+...... .+. .-
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~--l~~~g~~V~y~t~~------~l~~~l~~~~~-~--~~~~~~~~~~----~l~-~~ 247 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKE--LLDRGKSVIYRTAD------ELIEILREIRF-N--NDKELEEVYD----LLI-NC 247 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHH--HHHCCCeEEEEEHH------HHHHHHHHHHh-c--cchhHHHHHH----Hhc-cC
Confidence 55899999999999999999984 33333356777543 34443332111 1 1111111112 222 22
Q ss_pred eEEEEEcCCCCCcCChhh--HHHhhcCC-CCCcEEEEEccc
Q 001998 288 FFMVLDNLWTDDYRKWEP--FRNCLMNG-LRGSKILLTTRK 325 (984)
Q Consensus 288 ~LlVlDdvw~~~~~~~~~--l~~~l~~~-~~gs~iiiTtr~ 325 (984)
=||||||+-.+....|.. +...+... ..+-.+||||..
T Consensus 248 DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 248 DLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred CEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 489999997654445543 33333321 235568888874
No 221
>PHA00729 NTP-binding motif containing protein
Probab=96.49 E-value=0.017 Score=58.17 Aligned_cols=25 Identities=32% Similarity=0.274 Sum_probs=21.6
Q ss_pred ceEEEEEEecCcchHHHHHHHHhcC
Q 001998 206 TVQIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
+...+.|+|.+|+||||||..+.+.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 3457889999999999999998873
No 222
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.48 E-value=0.017 Score=54.91 Aligned_cols=116 Identities=16% Similarity=0.128 Sum_probs=64.5
Q ss_pred EEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecC---CCCHHHHHHHHHHHhc----CC-----CCC-ccc---
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSD---PFDEFSVAKAIIEELE----GS-----ATD-LHE--- 271 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~---~~~~~~~~~~i~~~l~----~~-----~~~-~~~--- 271 (984)
..|-|++-.|.||||+|....- +..++=..+.+|..-. ......+++.+ ..+. +. ..+ ..+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~--ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLAL--RALGHGYRVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 4677888889999999966654 2333333444544332 23444444433 1110 00 001 111
Q ss_pred HHHHHHHHHHHhCCCce-EEEEEcCCC---CCcCChhhHHHhhcCCCCCcEEEEEccch
Q 001998 272 LNSLLRRIGANIAGQKF-FMVLDNLWT---DDYRKWEPFRNCLMNGLRGSKILLTTRKE 326 (984)
Q Consensus 272 ~~~~~~~l~~~l~~kr~-LlVlDdvw~---~~~~~~~~l~~~l~~~~~gs~iiiTtr~~ 326 (984)
.....+..++.+....| |||||++-. -..-..+.+...+.....+..||+|.|+.
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 12233344455554444 999999732 22345566777777777788999999984
No 223
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.47 E-value=0.0029 Score=60.85 Aligned_cols=97 Identities=25% Similarity=0.187 Sum_probs=70.6
Q ss_pred cCCCCccccCcccccccCccceEEecCCCccccchhhc-cCCcccEEecccccccccccc--cccCCCCCCeEEeccCCC
Q 001998 597 DGGENTVHDIPREIEKLIHLRSLRLAGLKIEELPETCC-KLFNLQTLDINECYRLKRLPQ--GVGSLVNLRHLVVSLNGD 673 (984)
Q Consensus 597 ~l~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~-~L~~L~~L~L~~~~~l~~lP~--~i~~L~~L~~L~l~~~~~ 673 (984)
|+++|.+..++. +..+..|.+|.|.+|.|+.+-+.+. .+++|++|.|.+|+ +.++-+ .+..+++|++|.+-+|+.
T Consensus 48 DLtdNdl~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~L~~Ltll~Npv 125 (233)
T KOG1644|consen 48 DLTDNDLRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLASCPKLEYLTLLGNPV 125 (233)
T ss_pred cccccchhhccc-CCCccccceEEecCCcceeeccchhhhccccceEEecCcc-hhhhhhcchhccCCccceeeecCCch
Confidence 788888776654 7788899999999999998866655 46779999999987 665532 256788999998887743
Q ss_pred cccCC----ccCCCCCCCCcCCceEec
Q 001998 674 LDYLP----KGVERLTSLRTLREFVVS 696 (984)
Q Consensus 674 l~~~p----~~i~~l~~L~~L~~~~~~ 696 (984)
. .-+ .-+..+++|++|+...+.
T Consensus 126 ~-~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 126 E-HKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred h-cccCceeEEEEecCcceEeehhhhh
Confidence 2 211 136778888888776554
No 224
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.47 E-value=0.0093 Score=60.89 Aligned_cols=49 Identities=14% Similarity=0.150 Sum_probs=37.0
Q ss_pred CceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHH
Q 001998 205 NTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAK 256 (984)
Q Consensus 205 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 256 (984)
+.-+++.|+|.+|+|||++|.++... ....-..++|++... ++...+.+
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC-CCHHHHHH
Confidence 34679999999999999999888763 333456889998875 66655444
No 225
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.46 E-value=0.07 Score=58.06 Aligned_cols=93 Identities=13% Similarity=0.117 Sum_probs=65.5
Q ss_pred CCceEEEEEcCCCCCcCChhhHHHhhcCCCCCcEEEEEccc-hHHHhh-cCCCCeEeCCCCChHhHHHHHHHHhcCCCCC
Q 001998 285 GQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILLTTRK-ETVARM-MESTDIVYVQGLSEPECWSLFRRFAFSGRTP 362 (984)
Q Consensus 285 ~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~-~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 362 (984)
+++=++|+|+++..+...+..+...+-.-..++.+|++|.+ ..+... ......+.+.+++.++..+.+.....
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~~----- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQGV----- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcCC-----
Confidence 45558899999887777888888888777777777666665 444433 33457899999999999998876421
Q ss_pred CCchhHHHHHHHHHHhcCCChHHHHHH
Q 001998 363 LECDQLEEIGRGIVRKCKGLPLAAKTI 389 (984)
Q Consensus 363 ~~~~~l~~~~~~i~~~~~GlPLai~~~ 389 (984)
. .. ..++..++|.|..+..+
T Consensus 206 -~--~~----~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 206 -A--DA----DALLAEAGGAPLAALAL 225 (342)
T ss_pred -C--hH----HHHHHHcCCCHHHHHHH
Confidence 1 11 22577889999765544
No 226
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.45 E-value=0.018 Score=60.12 Aligned_cols=89 Identities=18% Similarity=0.143 Sum_probs=53.2
Q ss_pred ceEEEEEEecCcchHHHHHHHHhcCccccc----CCCeEEEEEecCCCCHHHHHHHHHHHhcCCC------------CCc
Q 001998 206 TVQIFSMVGMGGIGKTTLAQLAYNDNDVIN----NFEIRVWVCVSDPFDEFSVAKAIIEELEGSA------------TDL 269 (984)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~------------~~~ 269 (984)
.-.++.|+|.+|.|||+||.+++-...... .-..++|++....++..++ .++++...... .+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl-~~~~~~~~~~~~~~~~~i~~~~~~~~ 96 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL-VQIAERFGLDPEEVLDNIYVARAYNS 96 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH-HHHHHHhccChHhHhcCEEEEecCCH
Confidence 457899999999999999998864322222 1367899998887776544 33444432211 111
Q ss_pred ccHHHHHHHHHHHhC-C-CceEEEEEcC
Q 001998 270 HELNSLLRRIGANIA-G-QKFFMVLDNL 295 (984)
Q Consensus 270 ~~~~~~~~~l~~~l~-~-kr~LlVlDdv 295 (984)
.++......+...+. . +.-+||+|.+
T Consensus 97 ~~l~~~l~~l~~~l~~~~~~~liVIDSi 124 (235)
T cd01123 97 DHQLQLLEELEAILIESSRIKLVIVDSV 124 (235)
T ss_pred HHHHHHHHHHHHHHhhcCCeeEEEEeCc
Confidence 222233344444443 3 5568888887
No 227
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.41 E-value=0.039 Score=57.59 Aligned_cols=174 Identities=19% Similarity=0.180 Sum_probs=96.1
Q ss_pred CCcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCH-HHHHH
Q 001998 178 VSEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDE-FSVAK 256 (984)
Q Consensus 178 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~-~~~~~ 256 (984)
...++|-.++..++..++....-. ++..-+.|+|+.|.|||+|...+..| .+..=+..+-|........ +-.++
T Consensus 23 ~~~l~g~~~~~~~l~~~lkqt~~~---gEsnsviiigprgsgkT~li~~~Ls~--~q~~~E~~l~v~Lng~~~~dk~al~ 97 (408)
T KOG2228|consen 23 HINLFGVQDEQKHLSELLKQTILH---GESNSVIIIGPRGSGKTILIDTRLSD--IQENGENFLLVRLNGELQTDKIALK 97 (408)
T ss_pred CcceeehHHHHHHHHHHHHHHHHh---cCCCceEEEccCCCCceEeeHHHHhh--HHhcCCeEEEEEECccchhhHHHHH
Confidence 346889999999998888654321 12334678999999999999887775 2222233344555544433 22455
Q ss_pred HHHHHhcC----CCCC----cccHHHHHHHHHHHh--CCCceEEEEEcCCCCCcCChhhHHHhhcC-----CCCCcEEEE
Q 001998 257 AIIEELEG----SATD----LHELNSLLRRIGANI--AGQKFFMVLDNLWTDDYRKWEPFRNCLMN-----GLRGSKILL 321 (984)
Q Consensus 257 ~i~~~l~~----~~~~----~~~~~~~~~~l~~~l--~~kr~LlVlDdvw~~~~~~~~~l~~~l~~-----~~~gs~iii 321 (984)
.|.+|+.. .... ...+..+...+...- .+-++++|+|.+.-.-.-.-..+...+.+ ..+-+-|-+
T Consensus 98 ~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~ 177 (408)
T KOG2228|consen 98 GITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGV 177 (408)
T ss_pred HHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEe
Confidence 56555532 1111 122333333333211 23457888887743221111223222222 245567788
Q ss_pred EccchH-------HHhhcCCCCeEeCCCCChHhHHHHHHHHh
Q 001998 322 TTRKET-------VARMMESTDIVYVQGLSEPECWSLFRRFA 356 (984)
Q Consensus 322 Ttr~~~-------v~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 356 (984)
|||-.. |-..+.-..++-++.++-++...++++..
T Consensus 178 Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 178 TTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred eccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 999643 22222223355567777788888887765
No 228
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.39 E-value=0.015 Score=60.15 Aligned_cols=46 Identities=15% Similarity=0.124 Sum_probs=35.0
Q ss_pred ceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHH
Q 001998 206 TVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSV 254 (984)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~ 254 (984)
.-.++.|+|.+|+|||++|.+++.. ....-..++|++.. .++...+
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~--~~~~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVE--AAKNGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEECC-CCCHHHH
Confidence 4679999999999999999888763 33345678899887 5665443
No 229
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.39 E-value=0.015 Score=57.51 Aligned_cols=36 Identities=22% Similarity=0.445 Sum_probs=28.5
Q ss_pred ceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEE
Q 001998 206 TVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWV 243 (984)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 243 (984)
...+|.++|+.|.||||+|+.+++ +....+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEE
Confidence 356899999999999999999997 455556556555
No 230
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.38 E-value=0.016 Score=63.99 Aligned_cols=144 Identities=17% Similarity=0.113 Sum_probs=86.9
Q ss_pred cccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCccccc-------------------CCCeE
Q 001998 180 EVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVIN-------------------NFEIR 240 (984)
Q Consensus 180 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~ 240 (984)
+++|-+....++..+..... .....+.++|+.|+||||+|..+.+.-.-.. ....+
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~-----~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 76 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG-----RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDF 76 (325)
T ss_pred CcccchhHHHHHHHHHHhcC-----CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCce
Confidence 46777888888888887433 1233588999999999999988876311000 12344
Q ss_pred EEEEecCCCC---HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCceEEEEEcCCCCCcCChhhHHHhhcCCCCCc
Q 001998 241 VWVCVSDPFD---EFSVAKAIIEELEGSATDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGS 317 (984)
Q Consensus 241 ~wv~~s~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs 317 (984)
..+..+.... ..+..+++.+....... .++.-++++|++.....+.-..+...+......+
T Consensus 77 lel~~s~~~~~~i~~~~vr~~~~~~~~~~~----------------~~~~kviiidead~mt~~A~nallk~lEep~~~~ 140 (325)
T COG0470 77 LELNPSDLRKIDIIVEQVRELAEFLSESPL----------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNT 140 (325)
T ss_pred EEecccccCCCcchHHHHHHHHHHhccCCC----------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCe
Confidence 5555554444 23344444443332211 3567799999997655545555666666667788
Q ss_pred EEEEEccch-HHHhhc-CCCCeEeCCCCC
Q 001998 318 KILLTTRKE-TVARMM-ESTDIVYVQGLS 344 (984)
Q Consensus 318 ~iiiTtr~~-~v~~~~-~~~~~~~l~~L~ 344 (984)
++|++|... .+...+ .....+++.+.+
T Consensus 141 ~~il~~n~~~~il~tI~SRc~~i~f~~~~ 169 (325)
T COG0470 141 RFILITNDPSKILPTIRSRCQRIRFKPPS 169 (325)
T ss_pred EEEEEcCChhhccchhhhcceeeecCCch
Confidence 888888843 333322 224566676633
No 231
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.37 E-value=0.0087 Score=62.53 Aligned_cols=82 Identities=13% Similarity=0.233 Sum_probs=50.3
Q ss_pred eEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCC
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAIIEELEGSATDLHELNSLLRRIGANIAGQ 286 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 286 (984)
..-+.++|.+|+|||.||.++.+. +...--.+.+++ ..+++.++...... .....++.+.+. +
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~--l~~~g~sv~f~~------~~el~~~Lk~~~~~--------~~~~~~l~~~l~-~ 167 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNE--LLKAGISVLFIT------APDLLSKLKAAFDE--------GRLEEKLLRELK-K 167 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEEE------HHHHHHHHHHHHhc--------CchHHHHHHHhh-c
Confidence 345889999999999999999994 443333566664 34566666555443 111222222221 2
Q ss_pred ceEEEEEcCCCCCcCChhh
Q 001998 287 KFFMVLDNLWTDDYRKWEP 305 (984)
Q Consensus 287 r~LlVlDdvw~~~~~~~~~ 305 (984)
-=||||||+-.+....|..
T Consensus 168 ~dlLIiDDlG~~~~~~~~~ 186 (254)
T COG1484 168 VDLLIIDDIGYEPFSQEEA 186 (254)
T ss_pred CCEEEEecccCccCCHHHH
Confidence 2389999997765566653
No 232
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.026 Score=64.60 Aligned_cols=107 Identities=13% Similarity=0.163 Sum_probs=65.0
Q ss_pred cCCcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHH
Q 001998 177 DVSEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAK 256 (984)
Q Consensus 177 ~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 256 (984)
-+.+.+|.++-+++|.+++--..= ...-+-++++.+|++|||||.+|+.++. .....|- + +++..-.|+.+|-.
T Consensus 409 LdeDHYgm~dVKeRILEfiAV~kL-rgs~qGkIlCf~GPPGVGKTSI~kSIA~--ALnRkFf-R--fSvGG~tDvAeIkG 482 (906)
T KOG2004|consen 409 LDEDHYGMEDVKERILEFIAVGKL-RGSVQGKILCFVGPPGVGKTSIAKSIAR--ALNRKFF-R--FSVGGMTDVAEIKG 482 (906)
T ss_pred hcccccchHHHHHHHHHHHHHHhh-cccCCCcEEEEeCCCCCCcccHHHHHHH--HhCCceE-E--EeccccccHHhhcc
Confidence 456789999999999998853210 0123467999999999999999999997 3444442 1 24444444443321
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHHHhCCCceEEEEEcCC
Q 001998 257 AIIEELEGSATDLHELNSLLRRIGANIAGQKFFMVLDNLW 296 (984)
Q Consensus 257 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw 296 (984)
. .....+ .-...+++.|++. +-..=|+.+|.|.
T Consensus 483 H-----RRTYVG-AMPGkiIq~LK~v-~t~NPliLiDEvD 515 (906)
T KOG2004|consen 483 H-----RRTYVG-AMPGKIIQCLKKV-KTENPLILIDEVD 515 (906)
T ss_pred c-----ceeeec-cCChHHHHHHHhh-CCCCceEEeehhh
Confidence 1 001111 1123445555544 4445588889884
No 233
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.31 E-value=0.0011 Score=62.76 Aligned_cols=88 Identities=22% Similarity=0.149 Sum_probs=48.3
Q ss_pred EEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCceE
Q 001998 210 FSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAIIEELEGSATDLHELNSLLRRIGANIAGQKFF 289 (984)
Q Consensus 210 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~L 289 (984)
|.++|..|+|||+||+.++.- .. ....-+.++...+..+++...--. .+. .......+...+ .+..+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~--~~---~~~~~i~~~~~~~~~dl~g~~~~~-~~~--~~~~~~~l~~a~-----~~~~i 68 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAAL--LG---RPVIRINCSSDTTEEDLIGSYDPS-NGQ--FEFKDGPLVRAM-----RKGGI 68 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHH--HT---CEEEEEE-TTTSTHHHHHCEEET--TTT--TCEEE-CCCTTH-----HEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHH--hh---cceEEEEeccccccccceeeeeec-ccc--cccccccccccc-----cceeE
Confidence 578999999999999999873 21 123446777777777766443211 000 000000011011 17889
Q ss_pred EEEEcCCCCCcCChhhHHHhh
Q 001998 290 MVLDNLWTDDYRKWEPFRNCL 310 (984)
Q Consensus 290 lVlDdvw~~~~~~~~~l~~~l 310 (984)
+|||++...+...+..+...+
T Consensus 69 l~lDEin~a~~~v~~~L~~ll 89 (139)
T PF07728_consen 69 LVLDEINRAPPEVLESLLSLL 89 (139)
T ss_dssp EEESSCGG--HHHHHTTHHHH
T ss_pred EEECCcccCCHHHHHHHHHHH
Confidence 999999654444444554444
No 234
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.26 E-value=0.021 Score=58.76 Aligned_cols=43 Identities=14% Similarity=0.082 Sum_probs=32.1
Q ss_pred ceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCC
Q 001998 206 TVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFD 250 (984)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~ 250 (984)
.-+++.|.|.+|+||||+|.+++.. ....-..++|++....+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~--~~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVE--TAGQGKKVAYIDTEGLSS 60 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCCCCH
Confidence 4678999999999999999888763 323344678887655554
No 235
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.24 E-value=0.014 Score=61.57 Aligned_cols=136 Identities=26% Similarity=0.297 Sum_probs=72.7
Q ss_pred ccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcC-cccccCCCeEEE----EEecCCC------
Q 001998 181 VRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYND-NDVINNFEIRVW----VCVSDPF------ 249 (984)
Q Consensus 181 ~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~~~~F~~~~w----v~~s~~~------ 249 (984)
+-+|..+..--.++|+++ ....|.+.|.+|.|||-||-+..=. ...++.|..++= +.+.+..
T Consensus 226 i~prn~eQ~~ALdlLld~-------dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~ 298 (436)
T COG1875 226 IRPRNAEQRVALDLLLDD-------DIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGT 298 (436)
T ss_pred cCcccHHHHHHHHHhcCC-------CCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCc
Confidence 445778888888888754 4889999999999999999543321 112334433221 1122211
Q ss_pred ---CHHHHHHHHHHHhc---CC-CCCcccHHHHHHH------HHHHhCCCc---eEEEEEcCCCCCcCChhhHHHhhcCC
Q 001998 250 ---DEFSVAKAIIEELE---GS-ATDLHELNSLLRR------IGANIAGQK---FFMVLDNLWTDDYRKWEPFRNCLMNG 313 (984)
Q Consensus 250 ---~~~~~~~~i~~~l~---~~-~~~~~~~~~~~~~------l~~~l~~kr---~LlVlDdvw~~~~~~~~~l~~~l~~~ 313 (984)
.+.-=++.|...+. .. ......++.+..+ --.+.+++. -+||+|.+.+-. -.+++..+...
T Consensus 299 eEeKm~PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLT---pheikTiltR~ 375 (436)
T COG1875 299 EEEKMGPWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLT---PHELKTILTRA 375 (436)
T ss_pred hhhhccchHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccC---HHHHHHHHHhc
Confidence 11111222222221 11 1111111111000 012334443 489999997643 45566667778
Q ss_pred CCCcEEEEEccch
Q 001998 314 LRGSKILLTTRKE 326 (984)
Q Consensus 314 ~~gs~iiiTtr~~ 326 (984)
+.||||+.|---.
T Consensus 376 G~GsKIVl~gd~a 388 (436)
T COG1875 376 GEGSKIVLTGDPA 388 (436)
T ss_pred cCCCEEEEcCCHH
Confidence 8999999987643
No 236
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.18 E-value=0.0026 Score=38.10 Aligned_cols=21 Identities=24% Similarity=0.509 Sum_probs=13.3
Q ss_pred ccceEEecCCCccccchhhcc
Q 001998 615 HLRSLRLAGLKIEELPETCCK 635 (984)
Q Consensus 615 ~Lr~L~L~~~~i~~lp~~i~~ 635 (984)
+|++|+|++|.++.+|+++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 466666666666666666544
No 237
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.17 E-value=0.041 Score=59.86 Aligned_cols=89 Identities=11% Similarity=0.124 Sum_probs=47.5
Q ss_pred ceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCC--HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHh
Q 001998 206 TVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFD--EFSVAKAIIEELEGSATDLHELNSLLRRIGANI 283 (984)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 283 (984)
..++|+++|.+|+||||++.+++.. ...+=..+..+... .+. ..+-++...+.++.+-....+...+.+.+...-
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~--L~~~GkkVglI~aD-t~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk 316 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQ--FHGKKKTVGFITTD-HSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFK 316 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHH--HHHcCCcEEEEecC-CcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHH
Confidence 3579999999999999999998863 22221234445433 222 233333333333322111234445555454432
Q ss_pred CC-CceEEEEEcCCC
Q 001998 284 AG-QKFFMVLDNLWT 297 (984)
Q Consensus 284 ~~-kr~LlVlDdvw~ 297 (984)
.. +.=+|++|-.-.
T Consensus 317 ~~~~~DvVLIDTaGR 331 (436)
T PRK11889 317 EEARVDYILIDTAGK 331 (436)
T ss_pred hccCCCEEEEeCccc
Confidence 21 234778887643
No 238
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.15 E-value=0.0058 Score=65.88 Aligned_cols=51 Identities=18% Similarity=0.268 Sum_probs=41.8
Q ss_pred CcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcC
Q 001998 179 SEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
.+++|.++.++++++++.....+ .....+++.++|++|.||||||+.+.+.
T Consensus 51 ~~~~G~~~~i~~lv~~l~~~a~g-~~~~r~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 51 HDFFGMEEAIERFVNYFKSAAQG-LEERKQILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred hhccCcHHHHHHHHHHHHHHHhc-CCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999764421 1234689999999999999999999874
No 239
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.12 E-value=0.021 Score=59.81 Aligned_cols=88 Identities=23% Similarity=0.251 Sum_probs=54.0
Q ss_pred eEEEEEEecCcchHHHHHHHHhcCcccc----cCCCeEEEEEecCCCCHHHHHHHHHHHhcCCC------------CCcc
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYNDNDVI----NNFEIRVWVCVSDPFDEFSVAKAIIEELEGSA------------TDLH 270 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~------------~~~~ 270 (984)
-.+.=|+|.+|+|||.||-+++-...+. +.=..++|++....|...++. +|++....+. .+..
T Consensus 38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~~ 116 (256)
T PF08423_consen 38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDLE 116 (256)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSHH
T ss_pred CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCHH
Confidence 4588999999999999997776432222 223468999999999887765 5666543221 1112
Q ss_pred cHHHHHHHHHHHhC-CCceEEEEEcC
Q 001998 271 ELNSLLRRIGANIA-GQKFFMVLDNL 295 (984)
Q Consensus 271 ~~~~~~~~l~~~l~-~kr~LlVlDdv 295 (984)
+...+...+...+. .+--|||+|.+
T Consensus 117 ~l~~~L~~l~~~l~~~~ikLIVIDSI 142 (256)
T PF08423_consen 117 ELLELLEQLPKLLSESKIKLIVIDSI 142 (256)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETS
T ss_pred HHHHHHHHHHhhccccceEEEEecch
Confidence 22333334434343 34448889988
No 240
>PRK13695 putative NTPase; Provisional
Probab=96.11 E-value=0.007 Score=59.69 Aligned_cols=21 Identities=33% Similarity=0.403 Sum_probs=19.2
Q ss_pred EEEEecCcchHHHHHHHHhcC
Q 001998 210 FSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 210 i~I~G~gGiGKTtLa~~v~~~ 230 (984)
++|+|.+|+|||||++.+++.
T Consensus 3 i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 3 IGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998874
No 241
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.04 E-value=0.0043 Score=56.96 Aligned_cols=21 Identities=33% Similarity=0.439 Sum_probs=19.8
Q ss_pred EEEEEecCcchHHHHHHHHhc
Q 001998 209 IFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~ 229 (984)
||.|+|++|+||||+|+.+.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 242
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.04 E-value=0.054 Score=53.67 Aligned_cols=119 Identities=15% Similarity=0.123 Sum_probs=65.2
Q ss_pred eEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEE---ecCCCCHHHHHH------HHHHHhcCC------CCCccc
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVC---VSDPFDEFSVAK------AIIEELEGS------ATDLHE 271 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~---~s~~~~~~~~~~------~i~~~l~~~------~~~~~~ 271 (984)
-.+++|+|..|.|||||++.++.-. ......+++. +. ..+...... ++++.++.. ....+.
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~---~~~~G~v~~~g~~~~-~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLL---KPSSGEILLDGKDLA-SLSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEECC-cCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 3589999999999999999999732 2334444432 21 122222211 134443321 111122
Q ss_pred HHHHHHHHHHHhCCCceEEEEEcCCC-CCcCChhhHHHhhcCC-CC-CcEEEEEccchHHH
Q 001998 272 LNSLLRRIGANIAGQKFFMVLDNLWT-DDYRKWEPFRNCLMNG-LR-GSKILLTTRKETVA 329 (984)
Q Consensus 272 ~~~~~~~l~~~l~~kr~LlVlDdvw~-~~~~~~~~l~~~l~~~-~~-gs~iiiTtr~~~v~ 329 (984)
-+.-.-.+.+.+-..+-++++|+--. -|......+...+..- .. +.-||++|.+....
T Consensus 101 G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 101 GERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 22233345566677888999999743 2223334444444432 22 66788888876654
No 243
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.02 E-value=0.04 Score=57.05 Aligned_cols=81 Identities=12% Similarity=0.224 Sum_probs=48.8
Q ss_pred eEEEEEEecCcchHHHHHHHHhcCccc--ccCCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhC
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYNDNDV--INNFEIRVWVCVSDPFDEFSVAKAIIEELEGSATDLHELNSLLRRIGANIA 284 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 284 (984)
-|+|.++|++|.|||+|++++++.-.+ ...|....-+.++.. . +....... ..+-+..+-+++++.+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh----s----LFSKWFsE--SgKlV~kmF~kI~ELv~ 246 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH----S----LFSKWFSE--SGKLVAKMFQKIQELVE 246 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh----H----HHHHHHhh--hhhHHHHHHHHHHHHHh
Confidence 479999999999999999999987544 344544444433321 1 11222111 12334556667777776
Q ss_pred CCce--EEEEEcCCC
Q 001998 285 GQKF--FMVLDNLWT 297 (984)
Q Consensus 285 ~kr~--LlVlDdvw~ 297 (984)
++.. ++.+|.|.+
T Consensus 247 d~~~lVfvLIDEVES 261 (423)
T KOG0744|consen 247 DRGNLVFVLIDEVES 261 (423)
T ss_pred CCCcEEEEEeHHHHH
Confidence 6554 445788853
No 244
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.01 E-value=0.01 Score=59.61 Aligned_cols=223 Identities=17% Similarity=0.140 Sum_probs=122.9
Q ss_pred ccCCCceeEEeccCCCcch--hhhHHhhhccccccee-cCCCCccc----c-------CcccccccCccceEEecCCCcc
Q 001998 562 IFNAKKLRSLLIHSPLEVL--SPVLKGLFDHLTYGED-DGGENTVH----D-------IPREIEKLIHLRSLRLAGLKIE 627 (984)
Q Consensus 562 ~~~~~~Lr~L~l~~~~~~~--~~~~~~~~~~l~~Lrv-~l~~~~i~----~-------lp~~i~~L~~Lr~L~L~~~~i~ 627 (984)
+..+..+..+++++|.... ...+...+.+-+.|++ +++.-... + +...+-+|++|+..+||.|.+.
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 4446677778888876321 1223344566777777 66654322 2 3356778999999999999876
Q ss_pred -ccc----hhhccCCcccEEeccccccccccccc-ccCCCCCCeEEeccCCCcccCCccCCCCCCCCcCCceEecCCCCc
Q 001998 628 -ELP----ETCCKLFNLQTLDINECYRLKRLPQG-VGSLVNLRHLVVSLNGDLDYLPKGVERLTSLRTLREFVVSSTGGK 701 (984)
Q Consensus 628 -~lp----~~i~~L~~L~~L~L~~~~~l~~lP~~-i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~ 701 (984)
+.| +.|++-++|.+|.+++|. +.-+..+ |+ +.|.||- .|.+. ..-+.|++..+..+...+
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rig--kal~~la--~nKKa-------a~kp~Le~vicgrNRlen-- 171 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIG--KALFHLA--YNKKA-------ADKPKLEVVICGRNRLEN-- 171 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCC-CCccchhHHH--HHHHHHH--HHhhh-------ccCCCceEEEeccchhcc--
Confidence 333 467788999999999987 5433211 11 1233332 22121 122334333222111111
Q ss_pred ccccccccccccccccCCCeeEEcCCCCCCChhhhhHhcccCCCCCCeEEEEEcCCcccccCcCchhhccHHHHhhcCCC
Q 001998 702 YCTKACKVEGLRQLNHLRGTLRIRGLGNVTDVEEAEKADLEKKKNIVGLELRFDKEEAATEGINEENEINHQAISEALRP 781 (984)
Q Consensus 702 ~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 781 (984)
.........+....+|+.+.+..|.+... -...-....+..
T Consensus 172 ------------------------------gs~~~~a~~l~sh~~lk~vki~qNgIrpe---------gv~~L~~~gl~y 212 (388)
T COG5238 172 ------------------------------GSKELSAALLESHENLKEVKIQQNGIRPE---------GVTMLAFLGLFY 212 (388)
T ss_pred ------------------------------CcHHHHHHHHHhhcCceeEEeeecCcCcc---------hhHHHHHHHHHH
Confidence 00011122334445777777777765422 011223445556
Q ss_pred CCCCCeEEEeecCCCCC--------CCchhhcCCCCcEEEEeCcCCCC-cC----CCC--CCCCCcceeeecccc
Q 001998 782 PPDLEALEIMHYKGQTA--------FPSWIVSLNKLKKLKLSSCCKCE-IM----PPL--GALPSLEILQIQRME 841 (984)
Q Consensus 782 ~~~L~~L~L~~~~~~~~--------lp~~l~~l~~L~~L~L~~~~~~~-~l----~~l--~~Lp~L~~L~L~~~~ 841 (984)
+.+|+.|+|+.|.++.. +|.| +.|+.|.+.+|-... .. ..+ ...|+|..|.+.+|.
T Consensus 213 ~~~LevLDlqDNtft~~gS~~La~al~~W----~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne 283 (388)
T COG5238 213 SHSLEVLDLQDNTFTLEGSRYLADALCEW----NLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNE 283 (388)
T ss_pred hCcceeeeccccchhhhhHHHHHHHhccc----chhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhh
Confidence 77888888888876641 2333 457888888885432 11 111 136788888887765
No 245
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=95.97 E-value=0.029 Score=65.58 Aligned_cols=44 Identities=32% Similarity=0.484 Sum_probs=35.5
Q ss_pred CcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhc
Q 001998 179 SEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
.+++|.+..++.+...+.... ..-+.|+|..|+|||++|+.+++
T Consensus 65 ~~iiGqs~~i~~l~~al~~~~-------~~~vLi~Ge~GtGKt~lAr~i~~ 108 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGPN-------PQHVIIYGPPGVGKTAAARLVLE 108 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCCC-------CceEEEECCCCCCHHHHHHHHHH
Confidence 368999999999988765332 23457899999999999999975
No 246
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=95.97 E-value=0.036 Score=57.41 Aligned_cols=88 Identities=16% Similarity=0.073 Sum_probs=52.7
Q ss_pred ceEEEEEEecCcchHHHHHHHHhcCcccccCC------CeEEEEEecCCCCHHHHHHHHHHHhcCCC---------CCcc
Q 001998 206 TVQIFSMVGMGGIGKTTLAQLAYNDNDVINNF------EIRVWVCVSDPFDEFSVAKAIIEELEGSA---------TDLH 270 (984)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F------~~~~wv~~s~~~~~~~~~~~i~~~l~~~~---------~~~~ 270 (984)
.-.++.|+|.+|.|||+||..+... ....- ..++|+.....++...+. .+.+...... ....
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~--~~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~ 94 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVE--AQLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARPY 94 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHH--hhcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeCC
Confidence 4678999999999999999888653 22222 567899888777765543 3333322110 0112
Q ss_pred cHHHHHHHHHHHhC----CCceEEEEEcCC
Q 001998 271 ELNSLLRRIGANIA----GQKFFMVLDNLW 296 (984)
Q Consensus 271 ~~~~~~~~l~~~l~----~kr~LlVlDdvw 296 (984)
+.+++...+.+... .+.-+||+|.+.
T Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 95 NGEQQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred CHHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 33444444444332 344488899874
No 247
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=95.95 E-value=0.02 Score=59.59 Aligned_cols=86 Identities=17% Similarity=0.190 Sum_probs=52.8
Q ss_pred EEEEEEecCcchHHHHHHHHhcCcccccCC-CeEEEEEecCCC-CHHHHHHHHHHHhcCC-------CCCcccHH-----
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYNDNDVINNF-EIRVWVCVSDPF-DEFSVAKAIIEELEGS-------ATDLHELN----- 273 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~~s~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~----- 273 (984)
..++|+|..|+|||||++.+++. ++.+| +..+++-+.+.. .+.++.+++.+.-..+ ..+.....
T Consensus 70 Qr~~If~~~G~GKTtLa~~i~~~--i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~ 147 (274)
T cd01133 70 GKIGLFGGAGVGKTVLIMELINN--IAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVA 147 (274)
T ss_pred CEEEEecCCCCChhHHHHHHHHH--HHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 46889999999999999999984 55455 445666676554 4455666555431110 11111111
Q ss_pred HHHHHHHHHh---CCCceEEEEEcC
Q 001998 274 SLLRRIGANI---AGQKFFMVLDNL 295 (984)
Q Consensus 274 ~~~~~l~~~l---~~kr~LlVlDdv 295 (984)
...-.+.+++ +++.+|+++||+
T Consensus 148 ~~a~~~AEyfr~~~g~~Vl~~~Dsl 172 (274)
T cd01133 148 LTGLTMAEYFRDEEGQDVLLFIDNI 172 (274)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEeCh
Confidence 1222334444 389999999998
No 248
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.92 E-value=0.031 Score=54.28 Aligned_cols=40 Identities=25% Similarity=0.297 Sum_probs=29.5
Q ss_pred EEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCC
Q 001998 209 IFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFD 250 (984)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~ 250 (984)
++.|+|.+|.||||++..+... ....-..++|+.......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALN--IATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHH--HHhcCCEEEEEECCcchH
Confidence 3679999999999999999873 333345677887765543
No 249
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.87 E-value=0.0014 Score=76.92 Aligned_cols=41 Identities=20% Similarity=0.285 Sum_probs=26.2
Q ss_pred CcccEEeeecCcCCCCCCcCCC--CCCCcCeEEeccCcchHHh
Q 001998 898 PQLCYLDIRFCRKLKSLPDQLL--QSSTLEKLRIIRAPILRER 938 (984)
Q Consensus 898 ~~L~~L~l~~c~~l~~lp~~~~--~l~~L~~L~i~~c~~l~~~ 938 (984)
..|+.|.+..|.....--.... .+.++..+++.+|+.+...
T Consensus 401 ~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~ 443 (482)
T KOG1947|consen 401 DSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLK 443 (482)
T ss_pred CccceEecccCccccccchHHHhhhhhccccCCccCcccccch
Confidence 3388888888876544211111 1667888888888876544
No 250
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.85 E-value=0.06 Score=51.03 Aligned_cols=104 Identities=16% Similarity=0.133 Sum_probs=57.2
Q ss_pred EEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCc
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAIIEELEGSATDLHELNSLLRRIGANIAGQK 287 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 287 (984)
.+++|+|..|.|||||++.+..-. ......+|+.-. ..+.--. +.+.-+...-.+...+..++
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~~~-------------~~i~~~~-~lS~G~~~rv~laral~~~p 89 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGEL---EPDEGIVTWGST-------------VKIGYFE-QLSGGEKMRLALAKLLLENP 89 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCC---CCCceEEEECCe-------------EEEEEEc-cCCHHHHHHHHHHHHHhcCC
Confidence 588999999999999999998742 222333333110 0000000 01111222233455666777
Q ss_pred eEEEEEcCCC-CCcCChhhHHHhhcCCCCCcEEEEEccchHHHh
Q 001998 288 FFMVLDNLWT-DDYRKWEPFRNCLMNGLRGSKILLTTRKETVAR 330 (984)
Q Consensus 288 ~LlVlDdvw~-~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~v~~ 330 (984)
=++++|+.-. -|......+...+..- +..||++|.+.+...
T Consensus 90 ~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~ 131 (144)
T cd03221 90 NLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLD 131 (144)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHH
Confidence 8999999743 2233344455555433 246888887765543
No 251
>PRK06696 uridine kinase; Validated
Probab=95.85 E-value=0.01 Score=61.20 Aligned_cols=43 Identities=21% Similarity=0.255 Sum_probs=35.3
Q ss_pred ccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhc
Q 001998 183 GRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 183 Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
.|.+-+++|.+.+.... .....+|+|.|.+|.||||||+.+..
T Consensus 2 ~~~~~~~~la~~~~~~~----~~~~~iI~I~G~sgsGKSTlA~~L~~ 44 (223)
T PRK06696 2 SRKQLIKELAEHILTLN----LTRPLRVAIDGITASGKTTFADELAE 44 (223)
T ss_pred cHHHHHHHHHHHHHHhC----CCCceEEEEECCCCCCHHHHHHHHHH
Confidence 46777888888887543 23678999999999999999999987
No 252
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.83 E-value=0.053 Score=53.65 Aligned_cols=117 Identities=15% Similarity=0.103 Sum_probs=60.2
Q ss_pred EEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHHHHHhc--CC-------------CCCcccH
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAIIEELE--GS-------------ATDLHEL 272 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~--~~-------------~~~~~~~ 272 (984)
.+++|+|..|.|||||++.+..-.. .-...+++.-. +.......+-+.+. .+ ......-
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G 102 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDLK---PQQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGG 102 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCC---CCCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHH
Confidence 4799999999999999999987421 12223332110 11111011111110 00 0011111
Q ss_pred HHHHHHHHHHhCCCceEEEEEcCCCC-CcCChhhHHHhhcCCCCCcEEEEEccchHHHh
Q 001998 273 NSLLRRIGANIAGQKFFMVLDNLWTD-DYRKWEPFRNCLMNGLRGSKILLTTRKETVAR 330 (984)
Q Consensus 273 ~~~~~~l~~~l~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~~~gs~iiiTtr~~~v~~ 330 (984)
+...-.+.+.+-.++=++++|+..+. |....+.+...+..-..+..||++|.+.....
T Consensus 103 ~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 103 ERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 22233355566677889999997541 22223334444443234677888888876654
No 253
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.81 E-value=0.051 Score=53.37 Aligned_cols=118 Identities=16% Similarity=0.125 Sum_probs=61.1
Q ss_pred eEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecC--CCCHHHHHHHHHHHhcC--CCCC----------cccH
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSD--PFDEFSVAKAIIEELEG--SATD----------LHEL 272 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~--~~~~~~~~~~i~~~l~~--~~~~----------~~~~ 272 (984)
-.+++|+|..|.|||||.+.++.-. ......+++.-.. ....... + +.+.- +... .+.-
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~---~~~~G~i~~~g~~~~~~~~~~~-~---~~i~~~~~~~~~~~~t~~e~lLS~G 100 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLY---DPTSGEILIDGVDLRDLDLESL-R---KNIAYVPQDPFLFSGTIRENILSGG 100 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC---CCCCCEEEECCEEhhhcCHHHH-H---hhEEEEcCCchhccchHHHHhhCHH
Confidence 3489999999999999999998732 2233333331100 0011111 0 11110 0000 0111
Q ss_pred HHHHHHHHHHhCCCceEEEEEcCCC-CCcCChhhHHHhhcCCCCCcEEEEEccchHHHhh
Q 001998 273 NSLLRRIGANIAGQKFFMVLDNLWT-DDYRKWEPFRNCLMNGLRGSKILLTTRKETVARM 331 (984)
Q Consensus 273 ~~~~~~l~~~l~~kr~LlVlDdvw~-~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~v~~~ 331 (984)
+...-.+...+-.++=+++||+-.. -|......+...+..-..+..||++|.+......
T Consensus 101 ~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 160 (171)
T cd03228 101 QRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD 160 (171)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh
Confidence 1222235556667778999999743 2222333444444433335678888888766553
No 254
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=95.77 E-value=0.025 Score=54.95 Aligned_cols=131 Identities=17% Similarity=0.154 Sum_probs=65.2
Q ss_pred ccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHHHH
Q 001998 181 VRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAIIE 260 (984)
Q Consensus 181 ~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 260 (984)
++|....+.++.+.+..-.. ... -|.|+|..|.||+.+|+.+++... ..-..-+-|+++. .+...+..++..
T Consensus 1 liG~s~~m~~~~~~~~~~a~----~~~-pVlI~GE~GtGK~~lA~~IH~~s~--r~~~pfi~vnc~~-~~~~~~e~~LFG 72 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS----SDL-PVLITGETGTGKELLARAIHNNSP--RKNGPFISVNCAA-LPEELLESELFG 72 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT----STS--EEEECSTTSSHHHHHHHHHHCST--TTTS-EEEEETTT-S-HHHHHHHHHE
T ss_pred CEeCCHHHHHHHHHHHHHhC----CCC-CEEEEcCCCCcHHHHHHHHHHhhh--cccCCeEEEehhh-hhcchhhhhhhc
Confidence 47888888888887765442 123 455999999999999999998421 1122233444442 233333333332
Q ss_pred HhcCCCCC--cccHHHHHHHHHHHhCCCceEEEEEcCCCCCcCChhhHHHhhcCC------C-----CCcEEEEEccch
Q 001998 261 ELEGSATD--LHELNSLLRRIGANIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNG------L-----RGSKILLTTRKE 326 (984)
Q Consensus 261 ~l~~~~~~--~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~------~-----~gs~iiiTtr~~ 326 (984)
.-.+...+ ..... .+.. -..=-|+||++..-....-..|...+..+ . ...|||.||...
T Consensus 73 ~~~~~~~~~~~~~~G----~l~~---A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~~ 144 (168)
T PF00158_consen 73 HEKGAFTGARSDKKG----LLEQ---ANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSKD 144 (168)
T ss_dssp BCSSSSTTTSSEBEH----HHHH---TTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS-
T ss_pred cccccccccccccCC----ceee---ccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCcC
Confidence 22111111 11111 1111 12235888999664433333454544321 1 256888888753
No 255
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.75 E-value=0.065 Score=58.23 Aligned_cols=71 Identities=11% Similarity=0.086 Sum_probs=46.3
Q ss_pred CCceEEEEEcCCCCCcCChhhHHHhhcCCCCCcEEEEEccchH-HHhhc-CCCCeEeCCCCChHhHHHHHHHH
Q 001998 285 GQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILLTTRKET-VARMM-ESTDIVYVQGLSEPECWSLFRRF 355 (984)
Q Consensus 285 ~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~~ 355 (984)
+++=++|+|++..-+...-..+...+.....+..+|++|.+.. +...+ .....+.+.+++.+++.+.+...
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 3444556688866555555566666655445666777777644 44332 33568889999999998888654
No 256
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.75 E-value=0.046 Score=58.94 Aligned_cols=58 Identities=16% Similarity=0.137 Sum_probs=41.4
Q ss_pred ceEEEEEEecCcchHHHHHHHHhcCcccc----cCCCeEEEEEecCCCCHHHHHHHHHHHhcC
Q 001998 206 TVQIFSMVGMGGIGKTTLAQLAYNDNDVI----NNFEIRVWVCVSDPFDEFSVAKAIIEELEG 264 (984)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 264 (984)
.-+++-|+|.+|+|||+||.+++-..... +.=..++||+....|+..++.+ +++.++.
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~ 156 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGV 156 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 46789999999999999997765321221 1224789999998888887654 5666543
No 257
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.72 E-value=0.063 Score=51.51 Aligned_cols=123 Identities=20% Similarity=0.213 Sum_probs=71.2
Q ss_pred eEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEE---------------------ecCC-----------------
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVC---------------------VSDP----------------- 248 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~---------------------~s~~----------------- 248 (984)
-..+.++|.+|.||||+.+.+|...+. =...+|+. |-|+
T Consensus 28 Gef~fl~GpSGAGKSTllkLi~~~e~p---t~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL 104 (223)
T COG2884 28 GEFVFLTGPSGAGKSTLLKLIYGEERP---TRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPL 104 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhhcC---CCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhhh
Confidence 457899999999999999999985332 22333332 1111
Q ss_pred ----CCHHHHHHHHHHHh---cCC------CCCcccHHHHHHHHHHHhCCCceEEEEEcCC-CCCc-CChhhHHHhhcC-
Q 001998 249 ----FDEFSVAKAIIEEL---EGS------ATDLHELNSLLRRIGANIAGQKFFMVLDNLW-TDDY-RKWEPFRNCLMN- 312 (984)
Q Consensus 249 ----~~~~~~~~~i~~~l---~~~------~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw-~~~~-~~~~~l~~~l~~- 312 (984)
....++-+.+.+.+ +.. +...+.-++-.-.+.+.+-+++-+++=|.-- +-|+ -.|+- ...|..
T Consensus 105 ~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~i-m~lfeei 183 (223)
T COG2884 105 RVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEI-MRLFEEI 183 (223)
T ss_pred hccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHH-HHHHHHH
Confidence 12223333333222 211 1222333444445667778888899988642 1122 23443 333433
Q ss_pred CCCCcEEEEEccchHHHhhcC
Q 001998 313 GLRGSKILLTTRKETVARMME 333 (984)
Q Consensus 313 ~~~gs~iiiTtr~~~v~~~~~ 333 (984)
+..|+-||++|.+.++-+.+.
T Consensus 184 nr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 184 NRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred hhcCcEEEEEeccHHHHHhcc
Confidence 668999999999998877653
No 258
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.72 E-value=0.034 Score=63.85 Aligned_cols=76 Identities=21% Similarity=0.237 Sum_probs=54.5
Q ss_pred CCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHh
Q 001998 204 TNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAIIEELEGSATDLHELNSLLRRIGANI 283 (984)
Q Consensus 204 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 283 (984)
.+.-+++.++|++|+||||||.-++++ ..| .++-|++|+..+...+-..|...+........
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkq----aGY-sVvEINASDeRt~~~v~~kI~~avq~~s~l~a------------- 384 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQ----AGY-SVVEINASDERTAPMVKEKIENAVQNHSVLDA------------- 384 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHh----cCc-eEEEecccccccHHHHHHHHHHHHhhcccccc-------------
Confidence 456789999999999999999999874 223 46778888888777776666555543221111
Q ss_pred CCCceEEEEEcCCC
Q 001998 284 AGQKFFMVLDNLWT 297 (984)
Q Consensus 284 ~~kr~LlVlDdvw~ 297 (984)
.+++.-+|+|.+.-
T Consensus 385 dsrP~CLViDEIDG 398 (877)
T KOG1969|consen 385 DSRPVCLVIDEIDG 398 (877)
T ss_pred CCCcceEEEecccC
Confidence 26777899999854
No 259
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.70 E-value=0.065 Score=52.57 Aligned_cols=103 Identities=16% Similarity=0.045 Sum_probs=56.6
Q ss_pred eEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEE------ecCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVC------VSDPFDEFSVAKAIIEELEGSATDLHELNSLLRRIG 280 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~------~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 280 (984)
-.+++|+|..|.|||||++.+..-. ......+++. +.+... .+.-+...-.+.
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~i~~~~q~~~------------------LSgGq~qrv~la 83 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQL---IPNGDNDEWDGITPVYKPQYID------------------LSGGELQRVAIA 83 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC---CCCCcEEEECCEEEEEEcccCC------------------CCHHHHHHHHHH
Confidence 3489999999999999999998732 1222222221 112111 111222233455
Q ss_pred HHhCCCceEEEEEcCCCC-CcCChhhHHHhhcCC-CC-CcEEEEEccchHHHh
Q 001998 281 ANIAGQKFFMVLDNLWTD-DYRKWEPFRNCLMNG-LR-GSKILLTTRKETVAR 330 (984)
Q Consensus 281 ~~l~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~-~~-gs~iiiTtr~~~v~~ 330 (984)
..+..++=++++|+--+. |......+...+... .. +.-||++|.+.....
T Consensus 84 ral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~ 136 (177)
T cd03222 84 AALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLD 136 (177)
T ss_pred HHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH
Confidence 566677889999997431 222223333444321 22 256778887765544
No 260
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.69 E-value=0.094 Score=51.14 Aligned_cols=117 Identities=11% Similarity=0.026 Sum_probs=61.6
Q ss_pred eEEEEEEecCcchHHHHHHHHhcCccc-ccC--CC---eEEEEEecCCCC--HHHHHHHHHHHhcCCCCCcccHHHHHHH
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYNDNDV-INN--FE---IRVWVCVSDPFD--EFSVAKAIIEELEGSATDLHELNSLLRR 278 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~--F~---~~~wv~~s~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 278 (984)
-.+++|+|..|.|||||++.+..-... .+. ++ .+.+ +.+... ...+...+... .....+.-+...-.
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~--~~q~~~~~~~tv~~nl~~~---~~~~LS~G~~~rv~ 101 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLF--LPQRPYLPLGTLREQLIYP---WDDVLSGGEQQRLA 101 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEE--ECCCCccccccHHHHhhcc---CCCCCCHHHHHHHH
Confidence 347999999999999999999874221 111 11 1222 233221 11233332210 11222222333334
Q ss_pred HHHHhCCCceEEEEEcCCC-CCcCChhhHHHhhcCCCCCcEEEEEccchHHHh
Q 001998 279 IGANIAGQKFFMVLDNLWT-DDYRKWEPFRNCLMNGLRGSKILLTTRKETVAR 330 (984)
Q Consensus 279 l~~~l~~kr~LlVlDdvw~-~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~v~~ 330 (984)
+.+.+-.++=++++|+--+ -|......+...+... +..||++|.+.....
T Consensus 102 laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~ 152 (166)
T cd03223 102 FARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK 152 (166)
T ss_pred HHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh
Confidence 5566667778899998643 1222333344444433 356888888776544
No 261
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.68 E-value=0.077 Score=63.85 Aligned_cols=123 Identities=15% Similarity=0.198 Sum_probs=77.2
Q ss_pred CcccccHHHHHHHHHHHhcCCCCCCCC-ceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHH
Q 001998 179 SEVRGRDEEMRTLKSMLLCQGSDQQTN-TVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKA 257 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~-~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 257 (984)
..++|.++.+..|.+.+.....+.+.+ ....+.+.|+.|+|||-||+++.. .+-+..+..+=++.| +...
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~--~~Fgse~~~IriDms------e~~e- 632 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAE--YVFGSEENFIRLDMS------EFQE- 632 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHH--HHcCCccceEEechh------hhhh-
Confidence 358899999999999988765433332 456778999999999999998886 333333444444333 3333
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHHHhCCCce-EEEEEcCCCCCcCChhhHHHhhcC
Q 001998 258 IIEELEGSATDLHELNSLLRRIGANIAGQKF-FMVLDNLWTDDYRKWEPFRNCLMN 312 (984)
Q Consensus 258 i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~-LlVlDdvw~~~~~~~~~l~~~l~~ 312 (984)
...+.+.+..... .+....|.+.++.++| +|.||||...+.+....+...+..
T Consensus 633 -vskligsp~gyvG-~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~ 686 (898)
T KOG1051|consen 633 -VSKLIGSPPGYVG-KEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDR 686 (898)
T ss_pred -hhhccCCCccccc-chhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHhc
Confidence 3333333222211 1223356667788887 566899987766666655565544
No 262
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.67 E-value=0.037 Score=55.37 Aligned_cols=86 Identities=13% Similarity=0.056 Sum_probs=49.7
Q ss_pred EEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEec-CCCCHHHHHHHHHHHhcCCC---CCcccHHHHH-HHHHHH
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVS-DPFDEFSVAKAIIEELEGSA---TDLHELNSLL-RRIGAN 282 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s-~~~~~~~~~~~i~~~l~~~~---~~~~~~~~~~-~~l~~~ 282 (984)
+|+.+||+.|+||||.+.+++... ..+-..+..++.. ......+-++..++.++.+- ....+...+. +.+.+.
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~--~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~ 79 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARL--KLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKF 79 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH--HHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHH--hhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHH
Confidence 689999999999999998887643 2233456677654 23456667777777776431 1122233333 333333
Q ss_pred hCCCceEEEEEcC
Q 001998 283 IAGQKFFMVLDNL 295 (984)
Q Consensus 283 l~~kr~LlVlDdv 295 (984)
-..+.=+|++|=.
T Consensus 80 ~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 80 RKKGYDLVLIDTA 92 (196)
T ss_dssp HHTTSSEEEEEE-
T ss_pred hhcCCCEEEEecC
Confidence 2223347777765
No 263
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.65 E-value=0.17 Score=62.19 Aligned_cols=181 Identities=15% Similarity=0.167 Sum_probs=94.2
Q ss_pred CCcccccHHHHHHHHHHHhcCCCC------CCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCH
Q 001998 178 VSEVRGRDEEMRTLKSMLLCQGSD------QQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDE 251 (984)
Q Consensus 178 ~~~~~Gr~~~~~~l~~~L~~~~~~------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~ 251 (984)
-.++.|.+..++.+.+.+..+-.. .+-...+-+.++|.+|.|||++|+.+++. ....| +.+..
T Consensus 452 ~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e--~~~~f-----i~v~~---- 520 (733)
T TIGR01243 452 WSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATE--SGANF-----IAVRG---- 520 (733)
T ss_pred hhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE-----EEEeh----
Confidence 346788888888887765421100 00123345788999999999999999984 33333 22221
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCceEEEEEcCCCC------CcCC------hhhHHHhhcC--CCCCc
Q 001998 252 FSVAKAIIEELEGSATDLHELNSLLRRIGANIAGQKFFMVLDNLWTD------DYRK------WEPFRNCLMN--GLRGS 317 (984)
Q Consensus 252 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~------~~~~------~~~l~~~l~~--~~~gs 317 (984)
. +++....+. ....+...+...-...+.+|++|++..- .... ..++...+.. ...+-
T Consensus 521 ~----~l~~~~vGe-----se~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v 591 (733)
T TIGR01243 521 P----EILSKWVGE-----SEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNV 591 (733)
T ss_pred H----HHhhcccCc-----HHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCE
Confidence 1 111111111 1112233333333567799999998531 0011 1112222221 22344
Q ss_pred EEEEEccchHHHh-hc-C---CCCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCCh
Q 001998 318 KILLTTRKETVAR-MM-E---STDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLP 383 (984)
Q Consensus 318 ~iiiTtr~~~v~~-~~-~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlP 383 (984)
-||.||...+... .+ . -...+.+...+.++-.++|..+...... ...-++.. +++.+.|.-
T Consensus 592 ~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~-~~~~~l~~----la~~t~g~s 657 (733)
T TIGR01243 592 VVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPL-AEDVDLEE----LAEMTEGYT 657 (733)
T ss_pred EEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCC-CccCCHHH----HHHHcCCCC
Confidence 5666776554332 11 1 1457788888888888888765432211 12223444 666676644
No 264
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.63 E-value=0.082 Score=53.69 Aligned_cols=210 Identities=15% Similarity=0.156 Sum_probs=114.5
Q ss_pred cccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHH----HHhcCcccccCCCeEEEEEecCC-------
Q 001998 180 EVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQ----LAYNDNDVINNFEIRVWVCVSDP------- 248 (984)
Q Consensus 180 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~----~v~~~~~~~~~F~~~~wv~~s~~------- 248 (984)
.+.++++....+...... ++..-+.++|+.|.||-|.+. ++|.---.+-+-+.+.|.+-|..
T Consensus 14 ~l~~~~e~~~~Lksl~~~-------~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistv 86 (351)
T KOG2035|consen 14 ELIYHEELANLLKSLSST-------GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTV 86 (351)
T ss_pred hcccHHHHHHHHHHhccc-------CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEe
Confidence 356777777777665542 245668899999999999775 44542112224455556543332
Q ss_pred ---C-----------CHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCce-EEEEEcCCCCCcCChhhHHHhhcCC
Q 001998 249 ---F-----------DEFSVAKAIIEELEGSATDLHELNSLLRRIGANIAGQKF-FMVLDNLWTDDYRKWEPFRNCLMNG 313 (984)
Q Consensus 249 ---~-----------~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~-LlVlDdvw~~~~~~~~~l~~~l~~~ 313 (984)
+ .-+-+.++|+++...... ++ .-..+.| ++|+-.+.+-..+.-..++.....-
T Consensus 87 sS~yHlEitPSDaG~~DRvViQellKevAQt~q----ie--------~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkY 154 (351)
T KOG2035|consen 87 SSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQ----IE--------TQGQRPFKVVVINEADELTRDAQHALRRTMEKY 154 (351)
T ss_pred cccceEEeChhhcCcccHHHHHHHHHHHHhhcc----hh--------hccccceEEEEEechHhhhHHHHHHHHHHHHHH
Confidence 1 112333444443332110 00 0012344 5556555433223333455555444
Q ss_pred CCCcEEEEEccch--HHHhhcCCCCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHHHH
Q 001998 314 LRGSKILLTTRKE--TVARMMESTDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLPLAAKTIGS 391 (984)
Q Consensus 314 ~~gs~iiiTtr~~--~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~ 391 (984)
...+|+|+...+- -+...-...-.+++...+++|.-..+++.....+-.. | ++++.+|+++++|.---+..+-.
T Consensus 155 s~~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~l--p--~~~l~rIa~kS~~nLRrAllmlE 230 (351)
T KOG2035|consen 155 SSNCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQL--P--KELLKRIAEKSNRNLRRALLMLE 230 (351)
T ss_pred hcCceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccC--c--HHHHHHHHHHhcccHHHHHHHHH
Confidence 5567887754432 1222112245778999999999999988775443221 2 67889999999986544444333
Q ss_pred hhccC--C--------CHHHHHHHHhhhhhh
Q 001998 392 LLQFK--R--------TKEEWQSVLDSEMWQ 412 (984)
Q Consensus 392 ~l~~~--~--------~~~~w~~~l~~~~~~ 412 (984)
.++.+ . ..-+|+-.+.+....
T Consensus 231 ~~~~~n~~~~a~~~~i~~~dWe~~i~e~a~~ 261 (351)
T KOG2035|consen 231 AVRVNNEPFTANSQVIPKPDWEIYIQEIARV 261 (351)
T ss_pred HHHhccccccccCCCCCCccHHHHHHHHHHH
Confidence 33221 1 134788777654433
No 265
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.63 E-value=0.04 Score=58.78 Aligned_cols=88 Identities=14% Similarity=0.086 Sum_probs=45.4
Q ss_pred ceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCC-CHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhC
Q 001998 206 TVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPF-DEFSVAKAIIEELEGSATDLHELNSLLRRIGANIA 284 (984)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 284 (984)
..+++.|+|.+|+||||++..+......+..-..+..|+..... ...+.+..-.+.++.......+...+...+... .
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~-~ 271 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRL-R 271 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHc-c
Confidence 45799999999999999999887632222111245555543211 122333333333332222222334444444433 3
Q ss_pred CCceEEEEEcC
Q 001998 285 GQKFFMVLDNL 295 (984)
Q Consensus 285 ~kr~LlVlDdv 295 (984)
+ .=+|++|..
T Consensus 272 ~-~d~vliDt~ 281 (282)
T TIGR03499 272 D-KDLILIDTA 281 (282)
T ss_pred C-CCEEEEeCC
Confidence 3 347777753
No 266
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.61 E-value=0.083 Score=54.19 Aligned_cols=125 Identities=18% Similarity=0.151 Sum_probs=73.4
Q ss_pred eEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecC-----CCCHHHHHHHHHHHhcCCC------CCcccHHHH
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSD-----PFDEFSVAKAIIEELEGSA------TDLHELNSL 275 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~-----~~~~~~~~~~i~~~l~~~~------~~~~~~~~~ 275 (984)
-.+++|||..|.||||+++.+.. ....-...++..-.+ .....+...++++.++... +..-.-.+.
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~---L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILG---LEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHc---CcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 35899999999999999999987 333333444443111 2223344555666555321 111122233
Q ss_pred HH-HHHHHhCCCceEEEEEcCCCC-CcCChhhHHHhhcC--CCCCcEEEEEccchHHHhhcCC
Q 001998 276 LR-RIGANIAGQKFFMVLDNLWTD-DYRKWEPFRNCLMN--GLRGSKILLTTRKETVARMMES 334 (984)
Q Consensus 276 ~~-~l~~~l~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~--~~~gs~iiiTtr~~~v~~~~~~ 334 (984)
++ .+.+.|.-++-++|.|..-+. |...-.++...+.+ ...|-..+..|.+-.|+..+..
T Consensus 116 QRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isd 178 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISD 178 (268)
T ss_pred hhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcc
Confidence 33 366778889999999997442 11111334444433 2357778888888888776544
No 267
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.58 E-value=0.19 Score=59.78 Aligned_cols=155 Identities=21% Similarity=0.255 Sum_probs=84.5
Q ss_pred CcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCc---ccccC-CCeEEEEEecCCCCHHHH
Q 001998 179 SEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDN---DVINN-FEIRVWVCVSDPFDEFSV 254 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~---~~~~~-F~~~~wv~~s~~~~~~~~ 254 (984)
+.++||++|++++++.|..... +-.| ++|.+|+|||++|.-++... .|-.. =+..++.
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~K-----NNPv--LiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~s----------- 231 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTK-----NNPV--LVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYS----------- 231 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCC-----CCCe--EecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEE-----------
Confidence 4689999999999999986542 2222 58999999999986555420 11110 0112221
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHHHh-CCCceEEEEEcCCCC---------CcCChhhHHHhhcCCCCCcEEEEEcc
Q 001998 255 AKAIIEELEGSATDLHELNSLLRRIGANI-AGQKFFMVLDNLWTD---------DYRKWEPFRNCLMNGLRGSKILLTTR 324 (984)
Q Consensus 255 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdvw~~---------~~~~~~~l~~~l~~~~~gs~iiiTtr 324 (984)
-+|..-..+.. -..+.++....+.+.+ +.++..+++|.+.+- ..+.-..++++|..+. --.|=.||-
T Consensus 232 -LD~g~LvAGak-yRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGe-L~~IGATT~ 308 (786)
T COG0542 232 -LDLGSLVAGAK-YRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGE-LRCIGATTL 308 (786)
T ss_pred -ecHHHHhcccc-ccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCC-eEEEEeccH
Confidence 01111111211 1123344333333333 355899999998541 1222333555555543 223445554
Q ss_pred chHHHhhc-------CCCCeEeCCCCChHhHHHHHHHH
Q 001998 325 KETVARMM-------ESTDIVYVQGLSEPECWSLFRRF 355 (984)
Q Consensus 325 ~~~v~~~~-------~~~~~~~l~~L~~~~~~~lf~~~ 355 (984)
++ --+.+ ....++.+..-+.+++..+++..
T Consensus 309 ~E-YRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 309 DE-YRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred HH-HHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHH
Confidence 42 22111 23568888999999999888654
No 268
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.58 E-value=0.055 Score=52.58 Aligned_cols=116 Identities=12% Similarity=0.098 Sum_probs=62.2
Q ss_pred EEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecC--CCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCC
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSD--PFDEFSVAKAIIEELEGSATDLHELNSLLRRIGANIAG 285 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~--~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 285 (984)
.+++|+|..|.|||||.+.++.- .......+++.-.. ..+..+..+ +.+.-.. +.+.-+...-.+.+.+-.
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~---~~~~~G~v~~~g~~~~~~~~~~~~~---~~i~~~~-qLS~G~~qrl~laral~~ 99 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGL---YKPDSGEILVDGKEVSFASPRDARR---AGIAMVY-QLSVGERQMVEIARALAR 99 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC---CCCCCeEEEECCEECCcCCHHHHHh---cCeEEEE-ecCHHHHHHHHHHHHHhc
Confidence 48999999999999999999873 23344455543111 111111111 1111000 012222233345566667
Q ss_pred CceEEEEEcCCC-CCcCChhhHHHhhcCC-CCCcEEEEEccchHHHh
Q 001998 286 QKFFMVLDNLWT-DDYRKWEPFRNCLMNG-LRGSKILLTTRKETVAR 330 (984)
Q Consensus 286 kr~LlVlDdvw~-~~~~~~~~l~~~l~~~-~~gs~iiiTtr~~~v~~ 330 (984)
++-++++|+.-+ -|......+...+..- ..|.-||++|.+.....
T Consensus 100 ~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 100 NARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF 146 (163)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 788999999743 2222333444444432 34667888888866433
No 269
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.52 E-value=0.025 Score=56.92 Aligned_cols=111 Identities=14% Similarity=0.158 Sum_probs=58.0
Q ss_pred EEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHH-HHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCC
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEF-SVAKAIIEELEGSATDLHELNSLLRRIGANIAGQ 286 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 286 (984)
.++.|+|..|.||||++..+.+. ...+....++.-. .+.... .-...++.+-. . ..+.....+.++..+...
T Consensus 2 GlilI~GptGSGKTTll~~ll~~--~~~~~~~~i~t~e-~~~E~~~~~~~~~i~q~~---v-g~~~~~~~~~i~~aLr~~ 74 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDY--INKNKTHHILTIE-DPIEFVHESKRSLINQRE---V-GLDTLSFENALKAALRQD 74 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH--hhhcCCcEEEEEc-CCccccccCccceeeecc---c-CCCccCHHHHHHHHhcCC
Confidence 36899999999999999987763 3333334444322 111100 00001111100 0 011223445566777767
Q ss_pred ceEEEEEcCCCCCcCChhhHHHhhcCCCCCcEEEEEccchHHHh
Q 001998 287 KFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILLTTRKETVAR 330 (984)
Q Consensus 287 r~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~v~~ 330 (984)
+=.|++|++-+ .+.+..... ....|-.++.|+...++..
T Consensus 75 pd~ii~gEird--~e~~~~~l~---~a~~G~~v~~t~Ha~~~~~ 113 (198)
T cd01131 75 PDVILVGEMRD--LETIRLALT---AAETGHLVMSTLHTNSAAK 113 (198)
T ss_pred cCEEEEcCCCC--HHHHHHHHH---HHHcCCEEEEEecCCcHHH
Confidence 77999999943 223333222 2234556777777665544
No 270
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.51 E-value=0.069 Score=52.36 Aligned_cols=114 Identities=13% Similarity=0.169 Sum_probs=61.4
Q ss_pred eEEEEEEecCcchHHHHHHHHhcC---cccccC---CC--eEEEEEecCCCCHHHHHHHHHHHhcCCCC--C-----ccc
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYND---NDVINN---FE--IRVWVCVSDPFDEFSVAKAIIEELEGSAT--D-----LHE 271 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~---~~~~~~---F~--~~~wv~~s~~~~~~~~~~~i~~~l~~~~~--~-----~~~ 271 (984)
-.+++|+|..|.|||||.+.+..+ ..+... |. .+.|+ .+ .+.++.+..... + ...
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LSg 90 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLSG 90 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCCH
Confidence 358999999999999999988632 111111 11 12332 22 345555543211 1 111
Q ss_pred HHHHHHHHHHHhCCC--ceEEEEEcCCC-CCcCChhhHHHhhcCC-CCCcEEEEEccchHHHh
Q 001998 272 LNSLLRRIGANIAGQ--KFFMVLDNLWT-DDYRKWEPFRNCLMNG-LRGSKILLTTRKETVAR 330 (984)
Q Consensus 272 ~~~~~~~l~~~l~~k--r~LlVlDdvw~-~~~~~~~~l~~~l~~~-~~gs~iiiTtr~~~v~~ 330 (984)
-+...-.+...+-.+ +=++++|+.-. -+......+...+... ..|..||++|.+.+...
T Consensus 91 Gq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~ 153 (176)
T cd03238 91 GELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS 153 (176)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 122233344555566 67888898633 1222233344444331 24677889999877654
No 271
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.51 E-value=0.063 Score=58.47 Aligned_cols=58 Identities=17% Similarity=0.110 Sum_probs=41.6
Q ss_pred ceEEEEEEecCcchHHHHHHHHhcCccc---c-cCCCeEEEEEecCCCCHHHHHHHHHHHhcC
Q 001998 206 TVQIFSMVGMGGIGKTTLAQLAYNDNDV---I-NNFEIRVWVCVSDPFDEFSVAKAIIEELEG 264 (984)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~-~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 264 (984)
.-.++-|+|.+|+|||+||..++-.... . +.-..++|++....|..+++ .+|++.++.
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~ 183 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGL 183 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCC
Confidence 4678889999999999999877642221 1 12237899999999988775 455666543
No 272
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=95.50 E-value=0.072 Score=61.42 Aligned_cols=167 Identities=15% Similarity=0.180 Sum_probs=90.5
Q ss_pred cCCcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHH
Q 001998 177 DVSEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAK 256 (984)
Q Consensus 177 ~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 256 (984)
-+.+.+|.++.+++|++.|--..-. ..-.-.++++||++|+|||+|++.+++ ...+.|-. ++++.-.|..++-.
T Consensus 321 Ld~dHYGLekVKeRIlEyLAV~~l~-~~~kGpILcLVGPPGVGKTSLgkSIA~--al~RkfvR---~sLGGvrDEAEIRG 394 (782)
T COG0466 321 LDKDHYGLEKVKERILEYLAVQKLT-KKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKFVR---ISLGGVRDEAEIRG 394 (782)
T ss_pred hcccccCchhHHHHHHHHHHHHHHh-ccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCEEE---EecCccccHHHhcc
Confidence 4567899999999999988532100 012346999999999999999999998 45555522 23333333333211
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHHHhCCCceEEEEEcCCCCCc----CChhhHHHhhcCC-C------------CCcE-
Q 001998 257 AIIEELEGSATDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDY----RKWEPFRNCLMNG-L------------RGSK- 318 (984)
Q Consensus 257 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~----~~~~~l~~~l~~~-~------------~gs~- 318 (984)
. ..+..+. -...+.+.+++. +.+.=+++||.+..... +.-.++...|.+. + -=|+
T Consensus 395 H-----RRTYIGa-mPGrIiQ~mkka-~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~V 467 (782)
T COG0466 395 H-----RRTYIGA-MPGKIIQGMKKA-GVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKV 467 (782)
T ss_pred c-----ccccccc-CChHHHHHHHHh-CCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhhe
Confidence 1 0011111 123344444443 55667899999854221 1112233222110 0 0133
Q ss_pred EEEEccch-H-H-HhhcCCCCeEeCCCCChHhHHHHHHHHh
Q 001998 319 ILLTTRKE-T-V-ARMMESTDIVYVQGLSEPECWSLFRRFA 356 (984)
Q Consensus 319 iiiTtr~~-~-v-~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 356 (984)
+-|||-|. + + +..+....++++.+-+.+|=.++-+++.
T Consensus 468 mFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 468 MFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 33444332 1 1 2223445688888888888766655543
No 273
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.49 E-value=0.019 Score=55.50 Aligned_cols=93 Identities=23% Similarity=0.250 Sum_probs=66.6
Q ss_pred HhhcCCCCCCCCeEEEeecCCCCCCCchhhcCCCCcEEEEeCcCCCC--cCCCCCCCCCcceeeeccccCceEecceecC
Q 001998 775 ISEALRPPPDLEALEIMHYKGQTAFPSWIVSLNKLKKLKLSSCCKCE--IMPPLGALPSLEILQIQRMESVKRVGVEFLG 852 (984)
Q Consensus 775 ~~~~l~~~~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~--~l~~l~~Lp~L~~L~L~~~~~l~~~~~~~~~ 852 (984)
-+..|..++.|.+|.+++|.++..-|..-.-+++|..|.|.+|...+ .+.++..+|.|++|.+-+|+.-..-.-..+.
T Consensus 56 ~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yv 135 (233)
T KOG1644|consen 56 KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYV 135 (233)
T ss_pred hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEE
Confidence 35667888999999999999888444444468899999999997654 6777889999999999888722211111110
Q ss_pred ccCCCCCCCCCCccCcccccccccccccC
Q 001998 853 IESFNDYAPSSSLSLTAFPKLKELTLFHL 881 (984)
Q Consensus 853 ~~~~~~l~~~~~~~~~~f~~L~~L~l~~l 881 (984)
+-.+|+|+.|++...
T Consensus 136 --------------l~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 136 --------------LYKLPSLRTLDFQKV 150 (233)
T ss_pred --------------EEecCcceEeehhhh
Confidence 245788888887654
No 274
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.47 E-value=0.13 Score=51.89 Aligned_cols=61 Identities=15% Similarity=0.147 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhCCCceEEEEEcCC-CCCcCChhhHHHhhcCC--CCCcEEEEEccchHHHhhcC
Q 001998 273 NSLLRRIGANIAGQKFFMVLDNLW-TDDYRKWEPFRNCLMNG--LRGSKILLTTRKETVARMME 333 (984)
Q Consensus 273 ~~~~~~l~~~l~~kr~LlVlDdvw-~~~~~~~~~l~~~l~~~--~~gs~iiiTtr~~~v~~~~~ 333 (984)
++-.-.+.+.|-..+-+|+-|+-- +-|.+.-+.+...+..- ..|.-||+.|.+..+|..+.
T Consensus 147 qqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~d 210 (226)
T COG1136 147 QQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYAD 210 (226)
T ss_pred HHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCC
Confidence 344445777888888899999742 12223334455555542 45789999999999998653
No 275
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.45 E-value=0.1 Score=63.99 Aligned_cols=181 Identities=12% Similarity=0.078 Sum_probs=92.1
Q ss_pred CCcccccHHHHHHHHHHHhcCCCC------CCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCH
Q 001998 178 VSEVRGRDEEMRTLKSMLLCQGSD------QQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDE 251 (984)
Q Consensus 178 ~~~~~Gr~~~~~~l~~~L~~~~~~------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~ 251 (984)
-+++.|.+..++++.+++...-.. .+-...+-+.++|.+|.||||||+.+++. ....| +.+..+
T Consensus 177 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~--~~~~~---i~i~~~----- 246 (733)
T TIGR01243 177 YEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANE--AGAYF---ISINGP----- 246 (733)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHH--hCCeE---EEEecH-----
Confidence 346889999999988876422100 00122356889999999999999999883 32222 222211
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCceEEEEEcCCCCCc------C-----ChhhHHHhhcCC-CCCcEE
Q 001998 252 FSVAKAIIEELEGSATDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDY------R-----KWEPFRNCLMNG-LRGSKI 319 (984)
Q Consensus 252 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~------~-----~~~~l~~~l~~~-~~gs~i 319 (984)
++. ....+ .....+...+.......+.+|++|++..... . ....+...+... ..+..+
T Consensus 247 -~i~----~~~~g-----~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vi 316 (733)
T TIGR01243 247 -EIM----SKYYG-----ESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVI 316 (733)
T ss_pred -HHh----ccccc-----HHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEE
Confidence 111 11100 1112233333444456678999999843110 0 112233333221 233344
Q ss_pred EE-EccchH-HHhhcC----CCCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCCh
Q 001998 320 LL-TTRKET-VARMME----STDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLP 383 (984)
Q Consensus 320 ii-Ttr~~~-v~~~~~----~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlP 383 (984)
|| ||.... +...+. -...+.+...+.++-.+++....-.... ..+.. ...+++.+.|.-
T Consensus 317 vI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l-~~d~~----l~~la~~t~G~~ 381 (733)
T TIGR01243 317 VIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPL-AEDVD----LDKLAEVTHGFV 381 (733)
T ss_pred EEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCC-ccccC----HHHHHHhCCCCC
Confidence 44 454332 211111 1346777888888888888754422111 11112 344777777754
No 276
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.45 E-value=0.11 Score=51.19 Aligned_cols=118 Identities=19% Similarity=0.141 Sum_probs=60.7
Q ss_pred eEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHHHHHhcC--CC----CC--------cccH
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAIIEELEG--SA----TD--------LHEL 272 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~--~~----~~--------~~~~ 272 (984)
-.+++|+|..|.|||||++.++... ......+++.-..-.+.. ..+...+.- +. .. .+.-
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G 99 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLL---KPDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSGG 99 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCHH
Confidence 3589999999999999999998742 122333333110000000 011011100 00 00 1111
Q ss_pred HHHHHHHHHHhCCCceEEEEEcCCC-CCcCChhhHHHhhcCC-CCCcEEEEEccchHHHh
Q 001998 273 NSLLRRIGANIAGQKFFMVLDNLWT-DDYRKWEPFRNCLMNG-LRGSKILLTTRKETVAR 330 (984)
Q Consensus 273 ~~~~~~l~~~l~~kr~LlVlDdvw~-~~~~~~~~l~~~l~~~-~~gs~iiiTtr~~~v~~ 330 (984)
+...-.+...+..++=++++|+.-. -|......+...+... ..|.-||++|.+.....
T Consensus 100 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~ 159 (173)
T cd03230 100 MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAE 159 (173)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 2222345566777888999999743 1222233344444432 23677899998876554
No 277
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.44 E-value=0.027 Score=53.39 Aligned_cols=21 Identities=33% Similarity=0.463 Sum_probs=19.3
Q ss_pred EEEEEecCcchHHHHHHHHhc
Q 001998 209 IFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~ 229 (984)
||.++|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999885
No 278
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.44 E-value=0.08 Score=57.59 Aligned_cols=58 Identities=19% Similarity=0.093 Sum_probs=41.9
Q ss_pred ceEEEEEEecCcchHHHHHHHHhcCccc----ccCCCeEEEEEecCCCCHHHHHHHHHHHhcC
Q 001998 206 TVQIFSMVGMGGIGKTTLAQLAYNDNDV----INNFEIRVWVCVSDPFDEFSVAKAIIEELEG 264 (984)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~----~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 264 (984)
.-++.-|+|.+|+|||+|+.+++-.... .+.-..++||+....|...++.+ +++.++.
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~ 186 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGM 186 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 4678889999999999999877532122 12234789999999999887655 5565543
No 279
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.43 E-value=0.073 Score=57.61 Aligned_cols=58 Identities=19% Similarity=0.117 Sum_probs=40.4
Q ss_pred CceEEEEEEecCcchHHHHHHHHhcCccc---c-cCCCeEEEEEecCCCCHHHHHHHHHHHhc
Q 001998 205 NTVQIFSMVGMGGIGKTTLAQLAYNDNDV---I-NNFEIRVWVCVSDPFDEFSVAKAIIEELE 263 (984)
Q Consensus 205 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~-~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 263 (984)
+.-.++.|+|.+|+|||||+..++..... . +.-..++|++....|...+ +.++++.+.
T Consensus 94 ~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~R-l~~ia~~~~ 155 (316)
T TIGR02239 94 ETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPER-LLAIAERYG 155 (316)
T ss_pred CCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHH-HHHHHHHcC
Confidence 35679999999999999999887642111 1 1223679999888888776 444555543
No 280
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.40 E-value=0.17 Score=56.01 Aligned_cols=89 Identities=12% Similarity=0.127 Sum_probs=51.1
Q ss_pred ceEEEEEEecCcchHHHHHHHHhcCcccc--cCCCeEEEEEecCCCC--HHHHHHHHHHHhcCCCCCcccHHHHHHHHHH
Q 001998 206 TVQIFSMVGMGGIGKTTLAQLAYNDNDVI--NNFEIRVWVCVSDPFD--EFSVAKAIIEELEGSATDLHELNSLLRRIGA 281 (984)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~F~~~~wv~~s~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~ 281 (984)
..+++.++|..|+||||.+.+++...... .+-..+..|++. .+. ..+-++...+.++.+-......+.+...+.+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~D-t~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~ 251 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITID-NYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ 251 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecc-CccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHH
Confidence 35799999999999999998887632221 122345555544 332 2233455555554432222334455554544
Q ss_pred HhCCCceEEEEEcCCC
Q 001998 282 NIAGQKFFMVLDNLWT 297 (984)
Q Consensus 282 ~l~~kr~LlVlDdvw~ 297 (984)
. .+.=+|++|-+-.
T Consensus 252 ~--~~~DlVLIDTaGr 265 (388)
T PRK12723 252 S--KDFDLVLVDTIGK 265 (388)
T ss_pred h--CCCCEEEEcCCCC
Confidence 3 3456888998754
No 281
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=95.38 E-value=0.012 Score=55.52 Aligned_cols=108 Identities=14% Similarity=0.132 Sum_probs=60.5
Q ss_pred cccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCccc-ccCCCeEEEEEecCCCCHHHHHHHHHH
Q 001998 182 RGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDV-INNFEIRVWVCVSDPFDEFSVAKAIIE 260 (984)
Q Consensus 182 ~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F~~~~wv~~s~~~~~~~~~~~i~~ 260 (984)
||.-..++++.+.+..-.. ....|.|+|..|+||+++|+.++..... ...|... .+.. .
T Consensus 1 vG~S~~~~~l~~~l~~~a~-----~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~---~~~~-~----------- 60 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAK-----SSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVI---DCAS-L----------- 60 (138)
T ss_dssp --SCHHHHHHHHHHHHHHC-----SSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCC---CHHC-T-----------
T ss_pred CCCCHHHHHHHHHHHHHhC-----CCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEe---chhh-C-----------
Confidence 4666667777766654321 2335789999999999999998874221 1222111 0000 0
Q ss_pred HhcCCCCCcccHHHHHHHHHHHhCCCceEEEEEcCCCCCcCChhhHHHhhcCC-CCCcEEEEEccch
Q 001998 261 ELEGSATDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNG-LRGSKILLTTRKE 326 (984)
Q Consensus 261 ~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~-~~gs~iiiTtr~~ 326 (984)
. .+.+.+ .+.--++|+|+..-+.+....+...+... ....|+|.||+..
T Consensus 61 ----------~----~~~l~~---a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 61 ----------P----AELLEQ---AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp ----------C----HHHHHH---CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred ----------c----HHHHHH---cCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 0 111111 14556889999665544455566666543 5678999999853
No 282
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.35 E-value=0.043 Score=58.95 Aligned_cols=85 Identities=18% Similarity=0.150 Sum_probs=53.4
Q ss_pred CceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHHHHHhcCCC-----CCcccHHHHHHHH
Q 001998 205 NTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAIIEELEGSA-----TDLHELNSLLRRI 279 (984)
Q Consensus 205 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l 279 (984)
+.-+++-|+|.+|+||||||.+++-. ....-..++||+....++.. .+++++... ......++....+
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~~--~~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIAE--AQKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHH
Confidence 35678899999999999999887653 33344568899877766653 233333210 0112344455555
Q ss_pred HHHhC-CCceEEEEEcCC
Q 001998 280 GANIA-GQKFFMVLDNLW 296 (984)
Q Consensus 280 ~~~l~-~kr~LlVlDdvw 296 (984)
...++ +..-+||+|.|-
T Consensus 126 ~~li~s~~~~lIVIDSva 143 (325)
T cd00983 126 DSLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHHhccCCCEEEEcchH
Confidence 44443 455689999974
No 283
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.32 E-value=0.042 Score=58.92 Aligned_cols=85 Identities=18% Similarity=0.154 Sum_probs=53.4
Q ss_pred CceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHHHHHhcCCC-----CCcccHHHHHHHH
Q 001998 205 NTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAIIEELEGSA-----TDLHELNSLLRRI 279 (984)
Q Consensus 205 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l 279 (984)
+.-+++-|+|.+|+||||||.++... ....-..++|+.....++.. .+++++... ......++....+
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~--~~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~ 125 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA 125 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 35679999999999999999887653 33334567889777666553 234443221 1112344555555
Q ss_pred HHHhC-CCceEEEEEcCC
Q 001998 280 GANIA-GQKFFMVLDNLW 296 (984)
Q Consensus 280 ~~~l~-~kr~LlVlDdvw 296 (984)
...++ +..-+||+|.|-
T Consensus 126 ~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHHhhccCCcEEEEcchh
Confidence 44443 456699999984
No 284
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.30 E-value=0.035 Score=55.22 Aligned_cols=77 Identities=19% Similarity=0.202 Sum_probs=44.5
Q ss_pred ceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHHHHHh--cCCCCCcccHHHHHHHHHHHh
Q 001998 206 TVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAIIEEL--EGSATDLHELNSLLRRIGANI 283 (984)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l--~~~~~~~~~~~~~~~~l~~~l 283 (984)
.+.+|+|.|.+|.||||+|+.++. ...... ++-++...-+. ..-.....+.. .-..+..-+.+-+.+.|...+
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~--~~~~~~--~~~I~~D~YYk-~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~ 81 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSE--QLGVEK--VVVISLDDYYK-DQSHLPFEERNKINYDHPEAFDLDLLIEHLKDLK 81 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHH--HhCcCc--ceEeecccccc-chhhcCHhhcCCcCccChhhhcHHHHHHHHHHHH
Confidence 578999999999999999999997 333331 11122111111 11111111111 112334566777888888888
Q ss_pred CCCc
Q 001998 284 AGQK 287 (984)
Q Consensus 284 ~~kr 287 (984)
++++
T Consensus 82 ~g~~ 85 (218)
T COG0572 82 QGKP 85 (218)
T ss_pred cCCc
Confidence 8887
No 285
>CHL00195 ycf46 Ycf46; Provisional
Probab=95.28 E-value=0.17 Score=58.03 Aligned_cols=160 Identities=17% Similarity=0.093 Sum_probs=82.6
Q ss_pred CcccccHHHHHHHHHHHhc---CCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHH
Q 001998 179 SEVRGRDEEMRTLKSMLLC---QGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVA 255 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~---~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 255 (984)
.++.|.+..++.+...... ....-+-...+-|.++|++|.|||.+|+.+.+. ....| +-+..+ .++
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e--~~~~~---~~l~~~------~l~ 296 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIAND--WQLPL---LRLDVG------KLF 296 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEEhH------Hhc
Confidence 4678888777766643211 000000123466889999999999999999983 32222 112111 111
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHHHhCCCceEEEEEcCCCCCc--C-----Ch-h----hHHHhhcCCCCCcEEEEEc
Q 001998 256 KAIIEELEGSATDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDY--R-----KW-E----PFRNCLMNGLRGSKILLTT 323 (984)
Q Consensus 256 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~--~-----~~-~----~l~~~l~~~~~gs~iiiTt 323 (984)
.... +. ....+.+.+...-...+++|++|++..--. . .+ . .+...+.....+--||.||
T Consensus 297 ----~~~v----Ge-se~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTT 367 (489)
T CHL00195 297 ----GGIV----GE-SESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATA 367 (489)
T ss_pred ----cccc----Ch-HHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEec
Confidence 1111 10 111222223323345789999999853100 0 01 1 1222222233344566677
Q ss_pred cchHH-Hhhc---C-CCCeEeCCCCChHhHHHHHHHHhcC
Q 001998 324 RKETV-ARMM---E-STDIVYVQGLSEPECWSLFRRFAFS 358 (984)
Q Consensus 324 r~~~v-~~~~---~-~~~~~~l~~L~~~~~~~lf~~~~~~ 358 (984)
.+... -..+ + -...+.++.-+.++-.++|..+...
T Consensus 368 N~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~ 407 (489)
T CHL00195 368 NNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQK 407 (489)
T ss_pred CChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhh
Confidence 65432 1111 1 2457788888888888888877643
No 286
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.25 E-value=0.013 Score=66.37 Aligned_cols=49 Identities=24% Similarity=0.318 Sum_probs=39.6
Q ss_pred cccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhc
Q 001998 180 EVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 180 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
+++|.++.++++++.|....... ...-+++.++|+.|+||||||+.+.+
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl-~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGL-EEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhc-CCCCceEEEecCCCCCchHHHHHHHH
Confidence 68999999999999984332111 23457999999999999999999987
No 287
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.24 E-value=0.055 Score=54.31 Aligned_cols=106 Identities=20% Similarity=0.177 Sum_probs=50.5
Q ss_pred EEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHh----
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAIIEELEGSATDLHELNSLLRRIGANI---- 283 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l---- 283 (984)
+++.|.|.+|.||||+++.+... .... ...+.+......-... +.+..+.. ...+..........-
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~--~~~~-g~~v~~~apT~~Aa~~----L~~~~~~~---a~Ti~~~l~~~~~~~~~~~ 88 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEA--LEAA-GKRVIGLAPTNKAAKE----LREKTGIE---AQTIHSFLYRIPNGDDEGR 88 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHH--HHHT-T--EEEEESSHHHHHH----HHHHHTS----EEEHHHHTTEECCEECCSS
T ss_pred eEEEEEECCCCCHHHHHHHHHHH--HHhC-CCeEEEECCcHHHHHH----HHHhhCcc---hhhHHHHHhcCCccccccc
Confidence 57788999999999999988763 2222 1233333322222222 22232211 111111111000000
Q ss_pred --CCCceEEEEEcCCCCCcCChhhHHHhhcCCCCCcEEEEEccc
Q 001998 284 --AGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILLTTRK 325 (984)
Q Consensus 284 --~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~ 325 (984)
..++-+||+|++..-+...+..+...... .|+|+|+.--.
T Consensus 89 ~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~ 130 (196)
T PF13604_consen 89 PELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDP 130 (196)
T ss_dssp CC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-T
T ss_pred ccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCc
Confidence 13345999999976554455555554444 47788876543
No 288
>PRK09354 recA recombinase A; Provisional
Probab=95.19 E-value=0.056 Score=58.50 Aligned_cols=85 Identities=18% Similarity=0.161 Sum_probs=54.7
Q ss_pred CceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHHHHHhcCCC-----CCcccHHHHHHHH
Q 001998 205 NTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAIIEELEGSA-----TDLHELNSLLRRI 279 (984)
Q Consensus 205 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l 279 (984)
+.-+++-|+|..|+||||||.++... ....-..++||.....++.. .+++++... ......++....+
T Consensus 58 p~G~IteI~G~~GsGKTtLal~~~~~--~~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~ 130 (349)
T PRK09354 58 PRGRIVEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIA 130 (349)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 35678999999999999999887753 33344678899888777753 344443220 1112344455555
Q ss_pred HHHhC-CCceEEEEEcCC
Q 001998 280 GANIA-GQKFFMVLDNLW 296 (984)
Q Consensus 280 ~~~l~-~kr~LlVlDdvw 296 (984)
...++ ++.-+||+|.|-
T Consensus 131 ~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 131 DTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHHhhcCCCCEEEEeChh
Confidence 54443 456699999984
No 289
>PTZ00035 Rad51 protein; Provisional
Probab=95.16 E-value=0.13 Score=56.17 Aligned_cols=58 Identities=17% Similarity=0.107 Sum_probs=40.0
Q ss_pred CceEEEEEEecCcchHHHHHHHHhcCccc----ccCCCeEEEEEecCCCCHHHHHHHHHHHhc
Q 001998 205 NTVQIFSMVGMGGIGKTTLAQLAYNDNDV----INNFEIRVWVCVSDPFDEFSVAKAIIEELE 263 (984)
Q Consensus 205 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~----~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 263 (984)
+.-.++.|+|..|.|||||+..++-.... .+.=..++|++....|+..+ +.++++.++
T Consensus 116 ~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~er-i~~ia~~~g 177 (337)
T PTZ00035 116 ETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPER-IVQIAERFG 177 (337)
T ss_pred CCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHH-HHHHHHHhC
Confidence 35678999999999999999888643221 11223577998888787776 344455544
No 290
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.16 E-value=0.37 Score=51.20 Aligned_cols=192 Identities=15% Similarity=0.150 Sum_probs=104.0
Q ss_pred cCCcccccHHHHHHHHHHHhcCCCC------CCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCC
Q 001998 177 DVSEVRGRDEEMRTLKSMLLCQGSD------QQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFD 250 (984)
Q Consensus 177 ~~~~~~Gr~~~~~~l~~~L~~~~~~------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~ 250 (984)
...++=|-++.+++|.+...-+-.+ .+=...+=|.++|++|.|||-||++|++. ....| +.|..
T Consensus 149 tY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~--T~AtF-----Irvvg--- 218 (406)
T COG1222 149 TYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQ--TDATF-----IRVVG--- 218 (406)
T ss_pred ChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCceE-----EEecc---
Confidence 3446778999999888776432100 01124566889999999999999999994 33333 33322
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHh-CCCceEEEEEcCCCCC--------------cCChhhHHHhhcCC--
Q 001998 251 EFSVAKAIIEELEGSATDLHELNSLLRRIGANI-AGQKFFMVLDNLWTDD--------------YRKWEPFRNCLMNG-- 313 (984)
Q Consensus 251 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdvw~~~--------------~~~~~~l~~~l~~~-- 313 (984)
.++++..-+. -..+.+.+.+.- ...+..|++|.+..-. +...-+|...+..+
T Consensus 219 -----SElVqKYiGE------GaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~ 287 (406)
T COG1222 219 -----SELVQKYIGE------GARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDP 287 (406)
T ss_pred -----HHHHHHHhcc------chHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCC
Confidence 1222222221 123344444433 3568899999885310 11122233333222
Q ss_pred CCCcEEEEEccchHHHhh--cCC---CCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCCh----H
Q 001998 314 LRGSKILLTTRKETVARM--MES---TDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLP----L 384 (984)
Q Consensus 314 ~~gs~iiiTtr~~~v~~~--~~~---~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlP----L 384 (984)
...-|||..|...++..- +.+ ...+++..-+.+.-.++|+-++-.-. ....-+++. +++.|.|.- -
T Consensus 288 ~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~-l~~dvd~e~----la~~~~g~sGAdlk 362 (406)
T COG1222 288 RGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMN-LADDVDLEL----LARLTEGFSGADLK 362 (406)
T ss_pred CCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhcc-CccCcCHHH----HHHhcCCCchHHHH
Confidence 345689988877665432 122 45667764444444556665553322 233345655 666666654 4
Q ss_pred HHHHHHHhhc
Q 001998 385 AAKTIGSLLQ 394 (984)
Q Consensus 385 ai~~~~~~l~ 394 (984)
|+.+=|++++
T Consensus 363 aictEAGm~A 372 (406)
T COG1222 363 AICTEAGMFA 372 (406)
T ss_pred HHHHHHhHHH
Confidence 4555566553
No 291
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.12 E-value=0.059 Score=59.12 Aligned_cols=88 Identities=11% Similarity=0.131 Sum_probs=49.0
Q ss_pred eEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecC-CCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCC
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSD-PFDEFSVAKAIIEELEGSATDLHELNSLLRRIGANIAG 285 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 285 (984)
-+++.++|..|+||||++.++......+.....+..++... .....+-++...+.++.......+..++...+. .+.+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~-~l~~ 215 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALA-ELRN 215 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHH-HhcC
Confidence 46899999999999999999987321121223455555322 223445555555555543222222222333333 3344
Q ss_pred CceEEEEEcCC
Q 001998 286 QKFFMVLDNLW 296 (984)
Q Consensus 286 kr~LlVlDdvw 296 (984)
+ =+|++|..-
T Consensus 216 ~-DlVLIDTaG 225 (374)
T PRK14722 216 K-HMVLIDTIG 225 (374)
T ss_pred C-CEEEEcCCC
Confidence 4 456689874
No 292
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.12 E-value=0.11 Score=51.20 Aligned_cols=119 Identities=16% Similarity=0.164 Sum_probs=59.3
Q ss_pred EEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEec--CCCCHHHHHHHHHHHhcCCCC--C-------cccHHHHH
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVS--DPFDEFSVAKAIIEELEGSAT--D-------LHELNSLL 276 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s--~~~~~~~~~~~i~~~l~~~~~--~-------~~~~~~~~ 276 (984)
.+++|+|..|.|||||.+.+..-. ......+++.-. .........+.+. .+..... . .+.-+...
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~i~-~~~q~~~~~~~tv~~~lLS~G~~qr 104 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGLL---RPTSGRVRLDGADISQWDPNELGDHVG-YLPQDDELFSGSIAENILSGGQRQR 104 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc---CCCCCeEEECCEEcccCCHHHHHhheE-EECCCCccccCcHHHHCcCHHHHHH
Confidence 479999999999999999998732 222233332110 0011111111110 0000000 0 11112222
Q ss_pred HHHHHHhCCCceEEEEEcCCC-CCcCChhhHHHhhcC-CCCCcEEEEEccchHHHh
Q 001998 277 RRIGANIAGQKFFMVLDNLWT-DDYRKWEPFRNCLMN-GLRGSKILLTTRKETVAR 330 (984)
Q Consensus 277 ~~l~~~l~~kr~LlVlDdvw~-~~~~~~~~l~~~l~~-~~~gs~iiiTtr~~~v~~ 330 (984)
-.+...+-.++=++++|+... -|......+...+.. ...|..||++|.+.....
T Consensus 105 v~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 160 (173)
T cd03246 105 LGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA 160 (173)
T ss_pred HHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 334555666777999999743 122223334444433 124667888888876654
No 293
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.10 E-value=0.0026 Score=64.03 Aligned_cols=80 Identities=24% Similarity=0.237 Sum_probs=46.7
Q ss_pred cccCccceEEecCCCccccchhhccCCcccEEecccccccccccc--cccCCCCCCeEEeccCCCcccCCcc-----CCC
Q 001998 611 EKLIHLRSLRLAGLKIEELPETCCKLFNLQTLDINECYRLKRLPQ--GVGSLVNLRHLVVSLNGDLDYLPKG-----VER 683 (984)
Q Consensus 611 ~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~--~i~~L~~L~~L~l~~~~~l~~~p~~-----i~~ 683 (984)
.+|+.|+.|.|+-|+|++|. .+..+++|+.|.|+.|. +..+-. .+.++++|+.|.+..|+....-+.. +.-
T Consensus 38 ~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~ 115 (388)
T KOG2123|consen 38 EKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRV 115 (388)
T ss_pred HhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHH
Confidence 35666777777777766663 45566677777777665 444331 2466777777777666544333322 444
Q ss_pred CCCCCcCCc
Q 001998 684 LTSLRTLRE 692 (984)
Q Consensus 684 l~~L~~L~~ 692 (984)
|++|+.|+-
T Consensus 116 LPnLkKLDn 124 (388)
T KOG2123|consen 116 LPNLKKLDN 124 (388)
T ss_pred cccchhccC
Confidence 566666653
No 294
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.10 E-value=0.069 Score=53.68 Aligned_cols=79 Identities=19% Similarity=0.266 Sum_probs=44.3
Q ss_pred EEEEEecCcchHHHHHHHHhcCccccc-CCC---eEEEEEecCCCCHHHHHHHHHHHh----cCCCCCcccHHHHHHHHH
Q 001998 209 IFSMVGMGGIGKTTLAQLAYNDNDVIN-NFE---IRVWVCVSDPFDEFSVAKAIIEEL----EGSATDLHELNSLLRRIG 280 (984)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~---~~~wv~~s~~~~~~~~~~~i~~~l----~~~~~~~~~~~~~~~~l~ 280 (984)
||+|.|.+|+||||+|+.+..- ... .+. ....++.......... ...-... .......-+.+.+.+.++
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~--L~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~~~~~~~~~~~~p~a~d~~~l~~~l~ 77 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQI--LNKRGIPAMEMDIILSLDDFYDDYHL-RDRKGRGENRYNFDHPDAFDFDLLKEDLK 77 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH--HTTCTTTCCCSEEEEEGGGGBHHHHH-HHHHHHCTTTSSTTSGGGBSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH--hCccCcCccceeEEEeecccccccch-hhHhhccccccCCCCccccCHHHHHHHHH
Confidence 7999999999999999999873 322 222 2333333322222222 2221211 112234567777777777
Q ss_pred HHhCCCceEE
Q 001998 281 ANIAGQKFFM 290 (984)
Q Consensus 281 ~~l~~kr~Ll 290 (984)
...+++..-+
T Consensus 78 ~L~~g~~i~~ 87 (194)
T PF00485_consen 78 ALKNGGSIEI 87 (194)
T ss_dssp HHHTTSCEEE
T ss_pred HHhCCCcccc
Confidence 7666766544
No 295
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.10 E-value=0.094 Score=57.23 Aligned_cols=57 Identities=19% Similarity=0.184 Sum_probs=40.4
Q ss_pred ceEEEEEEecCcchHHHHHHHHhcCccccc----CCCeEEEEEecCCCCHHHHHHHHHHHhc
Q 001998 206 TVQIFSMVGMGGIGKTTLAQLAYNDNDVIN----NFEIRVWVCVSDPFDEFSVAKAIIEELE 263 (984)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 263 (984)
.-.++-|+|.+|+|||++|.+++-...... .=..++||+....|+...+.+ +++.++
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g 161 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALG 161 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcC
Confidence 467889999999999999988764322111 114789999998888877654 344443
No 296
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.10 E-value=0.19 Score=56.73 Aligned_cols=57 Identities=21% Similarity=0.128 Sum_probs=35.2
Q ss_pred ceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecC-CCCHHHHHHHHHHHhcC
Q 001998 206 TVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSD-PFDEFSVAKAIIEELEG 264 (984)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~ 264 (984)
...++.++|..|+||||+|.+++.. ....-..++-|++.. .....+.++.+.++++.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~--L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gv 151 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARY--FKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGV 151 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCC
Confidence 4679999999999999999998864 322212344444322 12234455556666543
No 297
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.07 E-value=0.013 Score=59.23 Aligned_cols=37 Identities=27% Similarity=0.189 Sum_probs=17.0
Q ss_pred cCCcccEEecccc--cccccccccccCCCCCCeEEeccC
Q 001998 635 KLFNLQTLDINEC--YRLKRLPQGVGSLVNLRHLVVSLN 671 (984)
Q Consensus 635 ~L~~L~~L~L~~~--~~l~~lP~~i~~L~~L~~L~l~~~ 671 (984)
.|++|+.|.++.| +....++.-..++++|++|++++|
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N 101 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN 101 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCC
Confidence 3445555555554 323334333344455555555554
No 298
>PRK08233 hypothetical protein; Provisional
Probab=95.07 E-value=0.064 Score=53.31 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=21.6
Q ss_pred eEEEEEEecCcchHHHHHHHHhcC
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
..+|+|.|.+|+||||||+.+...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 478999999999999999999863
No 299
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.06 E-value=0.15 Score=57.70 Aligned_cols=88 Identities=11% Similarity=0.067 Sum_probs=46.0
Q ss_pred eEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCC-CHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCC
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPF-DEFSVAKAIIEELEGSATDLHELNSLLRRIGANIAG 285 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 285 (984)
.+++.++|.+|+||||++.++.........-..+..|+..... ...+-++.-.+.++.......+...+...+.+. .
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~-~- 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQL-R- 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHh-C-
Confidence 4689999999999999998876532211223456666543211 111222232333332222222334444445432 3
Q ss_pred CceEEEEEcCC
Q 001998 286 QKFFMVLDNLW 296 (984)
Q Consensus 286 kr~LlVlDdvw 296 (984)
..=+|++|..-
T Consensus 299 ~~DlVlIDt~G 309 (424)
T PRK05703 299 DCDVILIDTAG 309 (424)
T ss_pred CCCEEEEeCCC
Confidence 34578889763
No 300
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.06 E-value=0.0023 Score=64.39 Aligned_cols=99 Identities=21% Similarity=0.179 Sum_probs=76.0
Q ss_pred CCCceeEEeccCCCcchhhhHHhhhccccccee-cCCCCccccCcccccccCccceEEecCCCccccch--hhccCCccc
Q 001998 564 NAKKLRSLLIHSPLEVLSPVLKGLFDHLTYGED-DGGENTVHDIPREIEKLIHLRSLRLAGLKIEELPE--TCCKLFNLQ 640 (984)
Q Consensus 564 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lrv-~l~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~--~i~~L~~L~ 640 (984)
++.+.+-|++.|+. +.. ..+..+++.|.| .|+-|.|..+.. +..|++|+.|.|+.|.|..+-+ .+.+|++|+
T Consensus 17 dl~~vkKLNcwg~~--L~D--Isic~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 17 DLENVKKLNCWGCG--LDD--ISICEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRKNCIESLDELEYLKNLPSLR 91 (388)
T ss_pred HHHHhhhhcccCCC--ccH--HHHHHhcccceeEEeeccccccchh-HHHHHHHHHHHHHhcccccHHHHHHHhcCchhh
Confidence 34567778888876 222 234688999999 999999988754 8899999999999999987754 788999999
Q ss_pred EEeccccccccccccc-----ccCCCCCCeEE
Q 001998 641 TLDINECYRLKRLPQG-----VGSLVNLRHLV 667 (984)
Q Consensus 641 ~L~L~~~~~l~~lP~~-----i~~L~~L~~L~ 667 (984)
+|.|..|.-...-+.. +.-|++|+.|+
T Consensus 92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 9999998755443332 45678888876
No 301
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.06 E-value=0.13 Score=57.72 Aligned_cols=24 Identities=33% Similarity=0.380 Sum_probs=21.3
Q ss_pred ceEEEEEEecCcchHHHHHHHHhc
Q 001998 206 TVQIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
...++.++|.+|+||||.|..++.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~ 121 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAY 121 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 467999999999999999988776
No 302
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.05 E-value=0.02 Score=53.23 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=20.4
Q ss_pred EEEEEEecCcchHHHHHHHHhcC
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
--|.|.|++|+||||+++++.+.
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~ 28 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEK 28 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHH
Confidence 45789999999999999999873
No 303
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.02 E-value=0.16 Score=48.96 Aligned_cols=116 Identities=17% Similarity=0.095 Sum_probs=64.3
Q ss_pred eEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEe---cCCCCHHHHHHHHHHHhc----CC-----C-CCc---c
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCV---SDPFDEFSVAKAIIEELE----GS-----A-TDL---H 270 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~---s~~~~~~~~~~~i~~~l~----~~-----~-~~~---~ 270 (984)
...|-|++-.|.||||.|..+.- +..++=..++.+.. ........++... .+. +. . ... .
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~--ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~~ 80 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMAL--RALGHGKKVGVIQFIKGAWPNGERAAFEPH--GVEFQVMGTGFTWETQNREADTA 80 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHH--HHHHCCCeEEEEEEecCCcccChHHHHHhc--CcEEEECCCCCeecCCCcHHHHH
Confidence 35778888899999999966554 22222223333322 2223444444443 111 00 0 001 1
Q ss_pred cHHHHHHHHHHHhCCCce-EEEEEcCCC---CCcCChhhHHHhhcCCCCCcEEEEEccch
Q 001998 271 ELNSLLRRIGANIAGQKF-FMVLDNLWT---DDYRKWEPFRNCLMNGLRGSKILLTTRKE 326 (984)
Q Consensus 271 ~~~~~~~~l~~~l~~kr~-LlVlDdvw~---~~~~~~~~l~~~l~~~~~gs~iiiTtr~~ 326 (984)
.........++.+...+| |||||.+-. -..-..+.+...+.....+..||+|-|+.
T Consensus 81 ~~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 81 IAKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 122334445555555555 999999731 12234556777777667778999999985
No 304
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.95 E-value=0.079 Score=52.15 Aligned_cols=21 Identities=38% Similarity=0.532 Sum_probs=19.3
Q ss_pred EEEEEecCcchHHHHHHHHhc
Q 001998 209 IFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~ 229 (984)
++.++|++|+||||+++.+..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~ 22 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLAL 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 678999999999999998886
No 305
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.93 E-value=0.079 Score=54.20 Aligned_cols=73 Identities=11% Similarity=0.027 Sum_probs=39.0
Q ss_pred EEEEEecCcchHHHHHHHHhcCccccc-CC-CeEEEEEecCCCCHHHHHHHHHHHhc-CCCCCcccHHHHHHHHHHHhC
Q 001998 209 IFSMVGMGGIGKTTLAQLAYNDNDVIN-NF-EIRVWVCVSDPFDEFSVAKAIIEELE-GSATDLHELNSLLRRIGANIA 284 (984)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F-~~~~wv~~s~~~~~~~~~~~i~~~l~-~~~~~~~~~~~~~~~l~~~l~ 284 (984)
+|+|.|..|+||||+|+.+... ... .. ..+..++...-+...+.+.... .+. ....+..+.+.+...+.....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~--l~~~~~~~~v~vi~~D~f~~~~~~~~~~~-~~~~~g~p~~~d~~~l~~~L~~l~~ 76 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQAL--LSRWPDHPNVELITTDGFLYPNKELIERG-LMDRKGFPESYDMEALLKFLKDIKS 76 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHH--HhhcCCCCcEEEEecCcccCcHHHHHHhh-hhhcCCCcccCCHHHHHHHHHHHHC
Confidence 5899999999999999998873 221 01 1244455444433333222221 111 112244455666655555444
No 306
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=94.92 E-value=0.014 Score=55.30 Aligned_cols=35 Identities=23% Similarity=0.199 Sum_probs=26.4
Q ss_pred eEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEE
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWV 243 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 243 (984)
..||.|.|.+|.||||||+.+.. +....-..+.++
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~--~L~~~g~~~~~L 36 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALER--RLFARGIKVYLL 36 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHH--HHHHTTS-EEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEe
Confidence 35899999999999999999998 444444455555
No 307
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=94.92 E-value=1 Score=48.15 Aligned_cols=134 Identities=10% Similarity=0.047 Sum_probs=78.6
Q ss_pred ceEEEEEEecCcchHHHHHHHHhcCc--------ccccCCCeEEEEEe-cCCCCHHHHHHHHHHHhcCCCCCcccHHHHH
Q 001998 206 TVQIFSMVGMGGIGKTTLAQLAYNDN--------DVINNFEIRVWVCV-SDPFDEFSVAKAIIEELEGSATDLHELNSLL 276 (984)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~--------~~~~~F~~~~wv~~-s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 276 (984)
-..+..++|..|.||+++|..+.+.. ....|-+...++.. .....++++. ++.+.+...+
T Consensus 17 l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~~~~---------- 85 (299)
T PRK07132 17 ISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLYFSS---------- 85 (299)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhccCC----------
Confidence 35677799999999999998776531 01112122333321 1112222211 2222221110
Q ss_pred HHHHHHhCCCceEEEEEcCCCCCcCChhhHHHhhcCCCCCcEEEEEccc-hHHHhh-cCCCCeEeCCCCChHhHHHHHHH
Q 001998 277 RRIGANIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILLTTRK-ETVARM-MESTDIVYVQGLSEPECWSLFRR 354 (984)
Q Consensus 277 ~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~-~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~ 354 (984)
.-.+++=++|+|++...+......+...+.....++.+|++|.+ ..+... ......+++.+++.++..+.+..
T Consensus 86 -----~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~~ 160 (299)
T PRK07132 86 -----FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLLS 160 (299)
T ss_pred -----cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHHH
Confidence 00246778899998665545566787788777777887776654 444433 34467899999999999887765
Q ss_pred H
Q 001998 355 F 355 (984)
Q Consensus 355 ~ 355 (984)
.
T Consensus 161 ~ 161 (299)
T PRK07132 161 K 161 (299)
T ss_pred c
Confidence 4
No 308
>PRK10867 signal recognition particle protein; Provisional
Probab=94.91 E-value=0.15 Score=57.37 Aligned_cols=24 Identities=38% Similarity=0.461 Sum_probs=20.7
Q ss_pred ceEEEEEEecCcchHHHHHHHHhc
Q 001998 206 TVQIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
...+|.++|.+|+||||.|.+++.
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 468999999999999998877665
No 309
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.91 E-value=0.097 Score=54.45 Aligned_cols=87 Identities=18% Similarity=0.141 Sum_probs=54.0
Q ss_pred CceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHHHHHhcCCC------------------
Q 001998 205 NTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAIIEELEGSA------------------ 266 (984)
Q Consensus 205 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~------------------ 266 (984)
+.-+++.|+|.+|+|||++|.++... ...+=..++|++..+. ..++.+++ ++++...
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~--~~~~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYG--ALKQGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHH--HHhCCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEeccccc
Confidence 34678999999999999999988542 1123457888887653 45555553 2232110
Q ss_pred --CCcccHHHHHHHHHHHhCC-CceEEEEEcCC
Q 001998 267 --TDLHELNSLLRRIGANIAG-QKFFMVLDNLW 296 (984)
Q Consensus 267 --~~~~~~~~~~~~l~~~l~~-kr~LlVlDdvw 296 (984)
....+.+.+...+.+.+.. +.-++|+|.+-
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0112335566666666653 55589999974
No 310
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.90 E-value=0.31 Score=48.10 Aligned_cols=122 Identities=16% Similarity=0.143 Sum_probs=65.6
Q ss_pred eEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEe-------------------cCCCC-----------------
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCV-------------------SDPFD----------------- 250 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~-------------------s~~~~----------------- 250 (984)
-.|++|+|+.|.|||||.+.+.. ....=+..+||.- -+.|+
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~---LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~ 104 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNG---LEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVK 104 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHC---CcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHH
Confidence 35899999999999999999876 3333334555531 12222
Q ss_pred --------HHHHHHHHHHHhcCC------CCCcccHHHHHHHHHHHhCCCceEEEEEcCCCC-CcCChhhHHHhhcC-CC
Q 001998 251 --------EFSVAKAIIEELEGS------ATDLHELNSLLRRIGANIAGQKFFMVLDNLWTD-DYRKWEPFRNCLMN-GL 314 (984)
Q Consensus 251 --------~~~~~~~i~~~l~~~------~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~-~~ 314 (984)
.++...++++.++.. +...+.-++-.-.|.+.|.-++=++.+|..-+. |++.-.++...+.. ..
T Consensus 105 v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~ 184 (240)
T COG1126 105 VKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAE 184 (240)
T ss_pred HcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHH
Confidence 112222222222211 111122233344567788888889999998542 23333333333332 23
Q ss_pred CCcEEEEEccchHHHhh
Q 001998 315 RGSKILLTTRKETVARM 331 (984)
Q Consensus 315 ~gs~iiiTtr~~~v~~~ 331 (984)
.|--.|+.|.....|..
T Consensus 185 eGmTMivVTHEM~FAr~ 201 (240)
T COG1126 185 EGMTMIIVTHEMGFARE 201 (240)
T ss_pred cCCeEEEEechhHHHHH
Confidence 46566777777555543
No 311
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.90 E-value=0.22 Score=49.49 Aligned_cols=61 Identities=10% Similarity=0.076 Sum_probs=37.9
Q ss_pred HHHHHHHhCCCceEEEEEcCCCCCcCChhhH---HHhhcC-CCCCcEEEEEccchHHHhhcCCCCeE
Q 001998 276 LRRIGANIAGQKFFMVLDNLWTDDYRKWEPF---RNCLMN-GLRGSKILLTTRKETVARMMESTDIV 338 (984)
Q Consensus 276 ~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l---~~~l~~-~~~gs~iiiTtr~~~v~~~~~~~~~~ 338 (984)
...+.+.+--++=+.|||...+ --+.+.+ ...+.. ...|+-+++.|..+.+++...+..++
T Consensus 152 R~EilQ~~~lePkl~ILDE~DS--GLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vh 216 (251)
T COG0396 152 RNEILQLLLLEPKLAILDEPDS--GLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVH 216 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCc--CccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEE
Confidence 3344444555677999999854 2333433 333322 23477788889999999887665444
No 312
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=94.82 E-value=0.37 Score=45.33 Aligned_cols=83 Identities=10% Similarity=0.197 Sum_probs=68.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHHhhhhccc-cchHHHHHHHHHHhhhhchhhHH
Q 001998 2 VDAIVSAVLEQLISVAAKEATEEVRLVVGVGQQVEKLKRNFRAIQAVLHDAEHRQV-REEGVRLWLDQLKDTSYDMEDVL 80 (984)
Q Consensus 2 a~~~~~~~~~~l~~~l~~~~~~~~~~~~~v~~~~~~l~~~l~~i~~~l~~a~~~~~-~~~~~~~wl~~lr~~ayd~eD~l 80 (984)
||.+++|+++.+++.+...+.+........+.-+++|...+.+|.=++++.+.... -+..-+.-++++.+..-++++++
T Consensus 3 ~eL~~gaalG~~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV 82 (147)
T PF05659_consen 3 AELVGGAALGAVFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELV 82 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHH
Confidence 67788888999999988888888888888999999999999999999999887532 22222566788888999999999
Q ss_pred HHHH
Q 001998 81 DEWI 84 (984)
Q Consensus 81 d~~~ 84 (984)
+.|.
T Consensus 83 ~k~s 86 (147)
T PF05659_consen 83 EKCS 86 (147)
T ss_pred HHhc
Confidence 8873
No 313
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=94.82 E-value=0.14 Score=53.74 Aligned_cols=89 Identities=15% Similarity=0.120 Sum_probs=60.0
Q ss_pred CceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHHHHH-hcC----CCCCcccHHHHHHHH
Q 001998 205 NTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAIIEE-LEG----SATDLHELNSLLRRI 279 (984)
Q Consensus 205 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~-l~~----~~~~~~~~~~~~~~l 279 (984)
+.-+++=|+|..|.||||+|-+++-. ....-..++|++.-..+++..+.. +... +.. +.....+-.++.+.+
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~~--aq~~g~~a~fIDtE~~l~p~r~~~-l~~~~~d~l~v~~~~~~e~q~~i~~~~ 134 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVAN--AQKPGGKAAFIDTEHALDPERAKQ-LGVDLLDNLLVSQPDTGEQQLEIAEKL 134 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHHH--hhcCCCeEEEEeCCCCCCHHHHHH-HHHhhhcceeEecCCCHHHHHHHHHHH
Confidence 46789999999999999999877653 344444889999999998876544 3333 221 222223334455555
Q ss_pred HHHhCCCceEEEEEcCC
Q 001998 280 GANIAGQKFFMVLDNLW 296 (984)
Q Consensus 280 ~~~l~~kr~LlVlDdvw 296 (984)
.+....+--|+|+|.+-
T Consensus 135 ~~~~~~~i~LvVVDSva 151 (279)
T COG0468 135 ARSGAEKIDLLVVDSVA 151 (279)
T ss_pred HHhccCCCCEEEEecCc
Confidence 55555556799999983
No 314
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=94.80 E-value=0.043 Score=53.37 Aligned_cols=78 Identities=14% Similarity=0.173 Sum_probs=44.2
Q ss_pred EEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCC--c-ccHHHHHHHHHHHhCCC
Q 001998 210 FSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAIIEELEGSATD--L-HELNSLLRRIGANIAGQ 286 (984)
Q Consensus 210 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~--~-~~~~~~~~~l~~~l~~k 286 (984)
+.|.|..|.|||++|.++... ....++++.-...++.+ ..+.|.+.-...+.. . .....+.+.+.+. . +
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~e-m~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~-~-~ 73 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDDE-MAERIARHRKRRPAHWRTIETPRDLVSALKEL-D-P 73 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCHH-HHHHHHHHHHhCCCCceEeecHHHHHHHHHhc-C-C
Confidence 578999999999999988752 23467777777777653 444433322212111 1 1112333333221 2 2
Q ss_pred ceEEEEEcC
Q 001998 287 KFFMVLDNL 295 (984)
Q Consensus 287 r~LlVlDdv 295 (984)
.-.|++|.+
T Consensus 74 ~~~VLIDcl 82 (169)
T cd00544 74 GDVVLIDCL 82 (169)
T ss_pred CCEEEEEcH
Confidence 337999986
No 315
>PRK05439 pantothenate kinase; Provisional
Probab=94.78 E-value=0.14 Score=54.76 Aligned_cols=80 Identities=16% Similarity=0.125 Sum_probs=44.4
Q ss_pred CceEEEEEEecCcchHHHHHHHHhcCcccccC--CCeEEEEEecCCCCHHHHHHHHHHHhc-CCCCCcccHHHHHHHHHH
Q 001998 205 NTVQIFSMVGMGGIGKTTLAQLAYNDNDVINN--FEIRVWVCVSDPFDEFSVAKAIIEELE-GSATDLHELNSLLRRIGA 281 (984)
Q Consensus 205 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--F~~~~wv~~s~~~~~~~~~~~i~~~l~-~~~~~~~~~~~~~~~l~~ 281 (984)
...-+|+|.|.+|+||||+|+.+.. ..... -..+.-++...-+...+.+..- ..+. ...++.-+.+.+...+..
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~--~l~~~~~~~~v~vi~~DdFy~~~~~l~~~-~l~~~kg~Pes~D~~~l~~~L~~ 160 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQA--LLSRWPEHPKVELVTTDGFLYPNAVLEER-GLMKRKGFPESYDMRALLRFLSD 160 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH--HHHhhCCCCceEEEeccccccCHHHHhhh-hccccCCCcccccHHHHHHHHHH
Confidence 4578999999999999999998876 22221 1223344444333333322210 0111 112344566667666666
Q ss_pred HhCCCc
Q 001998 282 NIAGQK 287 (984)
Q Consensus 282 ~l~~kr 287 (984)
...++.
T Consensus 161 Lk~G~~ 166 (311)
T PRK05439 161 VKSGKP 166 (311)
T ss_pred HHcCCC
Confidence 666654
No 316
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.74 E-value=0.07 Score=58.92 Aligned_cols=23 Identities=30% Similarity=0.273 Sum_probs=21.0
Q ss_pred eEEEEEEecCcchHHHHHHHHhc
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
..++.++|.+|+||||+|.++..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999886
No 317
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=94.71 E-value=0.016 Score=56.56 Aligned_cols=42 Identities=21% Similarity=0.245 Sum_probs=31.1
Q ss_pred eEEEEEEecCcchHHHHHHHHhcCcccc-cCCCeEEEEEecCCCC
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYNDNDVI-NNFEIRVWVCVSDPFD 250 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~~s~~~~ 250 (984)
..++.++|+.|+|||.||+.+.. .+. +.....+-+.++.-..
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~--~l~~~~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAE--LLFVGSERPLIRIDMSEYSE 45 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHH--HHT-SSCCEEEEEEGGGHCS
T ss_pred EEEEEEECCCCCCHHHHHHHHHH--HhccCCccchHHHhhhcccc
Confidence 56889999999999999999987 343 4455666666665443
No 318
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.69 E-value=0.017 Score=34.51 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=15.6
Q ss_pred cccEEecccccccccccccccCC
Q 001998 638 NLQTLDINECYRLKRLPQGVGSL 660 (984)
Q Consensus 638 ~L~~L~L~~~~~l~~lP~~i~~L 660 (984)
+|++|||++|. ++.+|.++++|
T Consensus 1 ~L~~Ldls~n~-l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNN-LTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSE-ESEEGTTTTT-
T ss_pred CccEEECCCCc-CEeCChhhcCC
Confidence 57888888885 77888766543
No 319
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.67 E-value=0.21 Score=49.54 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=21.0
Q ss_pred EEEEEEecCcchHHHHHHHHhcC
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
.+++|+|..|.|||||.+.+..-
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~ 49 (182)
T cd03215 27 EIVGIAGLVGNGQTELAEALFGL 49 (182)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999873
No 320
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=94.66 E-value=0.028 Score=54.78 Aligned_cols=80 Identities=19% Similarity=0.210 Sum_probs=42.4
Q ss_pred EEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCc---ccHHHHHHHHHHHhCC
Q 001998 209 IFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAIIEELEGSATDL---HELNSLLRRIGANIAG 285 (984)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~l~~~l~~ 285 (984)
++.|.|.+|.||||+|..+... ... ..+++.....++ .+..+.|.......+..- .....+...+.....+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~--~~~---~~~~iat~~~~~-~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~~ 76 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQ--SGL---QVLYIATAQPFD-DEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAP 76 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHH--cCC---CcEeCcCCCCCh-HHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcCC
Confidence 5789999999999999988753 111 234444444333 344455544332221111 1111233344443333
Q ss_pred CceEEEEEcC
Q 001998 286 QKFFMVLDNL 295 (984)
Q Consensus 286 kr~LlVlDdv 295 (984)
.-++++|.+
T Consensus 77 -~~~VlID~L 85 (170)
T PRK05800 77 -GRCVLVDCL 85 (170)
T ss_pred -CCEEEehhH
Confidence 237888986
No 321
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.66 E-value=0.18 Score=51.96 Aligned_cols=48 Identities=17% Similarity=0.124 Sum_probs=31.6
Q ss_pred eEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHH
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAI 258 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 258 (984)
-.++.|.|..|.||||+|.++... -.+.. ..+++++ ...+..++++.+
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~-~~~~g-~~~~yi~--~e~~~~~~~~~~ 71 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYG-FLQNG-YSVSYVS--TQLTTTEFIKQM 71 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH-HHhCC-CcEEEEe--CCCCHHHHHHHH
Confidence 458999999999999998655442 12222 3456665 334556666666
No 322
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.64 E-value=0.21 Score=49.25 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=21.6
Q ss_pred eEEEEEEecCcchHHHHHHHHhcC
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
..+++|+|.+|+||||+|+.+...
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~ 27 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEK 27 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999874
No 323
>PRK14974 cell division protein FtsY; Provisional
Probab=94.62 E-value=0.23 Score=53.93 Aligned_cols=89 Identities=19% Similarity=0.120 Sum_probs=46.9
Q ss_pred ceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCC--CHHHHHHHHHHHhcCCC---CCcccHHH-HHHHH
Q 001998 206 TVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPF--DEFSVAKAIIEELEGSA---TDLHELNS-LLRRI 279 (984)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~---~~~~~~~~-~~~~l 279 (984)
...++.++|+.|+||||++.+++.... ...+ .++.+. .+.+ ...+-++...+.++... ....+... +.+.+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~-~~g~-~V~li~-~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai 215 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLK-KNGF-SVVIAA-GDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAI 215 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH-HcCC-eEEEec-CCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHH
Confidence 468999999999999998888876321 2233 333443 2222 23344555566655321 11122222 22333
Q ss_pred HHHhCCCceEEEEEcCCC
Q 001998 280 GANIAGQKFFMVLDNLWT 297 (984)
Q Consensus 280 ~~~l~~kr~LlVlDdvw~ 297 (984)
...-....=+|++|-.-.
T Consensus 216 ~~~~~~~~DvVLIDTaGr 233 (336)
T PRK14974 216 EHAKARGIDVVLIDTAGR 233 (336)
T ss_pred HHHHhCCCCEEEEECCCc
Confidence 322222223888998744
No 324
>PTZ00301 uridine kinase; Provisional
Probab=94.59 E-value=0.047 Score=55.15 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=21.0
Q ss_pred eEEEEEEecCcchHHHHHHHHhc
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
..+|+|.|.+|.||||||+.+.+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 57899999999999999998876
No 325
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=94.59 E-value=0.13 Score=54.50 Aligned_cols=79 Identities=14% Similarity=0.106 Sum_probs=42.0
Q ss_pred CceEEEEEEecCcchHHHHHHHHhcCcccccCC--CeEEEEEecCCCCHHHHHHHHHHHhc-CCCCCcccHHHHHHHHHH
Q 001998 205 NTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNF--EIRVWVCVSDPFDEFSVAKAIIEELE-GSATDLHELNSLLRRIGA 281 (984)
Q Consensus 205 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~~s~~~~~~~~~~~i~~~l~-~~~~~~~~~~~~~~~l~~ 281 (984)
....+|+|.|..|+||||+|+.+.. ...... ..+..++...-+...+.+...- .+. ....+.-+.+.+...+..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~--ll~~~~~~g~V~vi~~D~f~~~~~~l~~~g-~~~~~g~P~s~D~~~l~~~L~~ 136 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA--LLSRWPEHRKVELITTDGFLHPNQVLKERN-LMKKKGFPESYDMHRLVKFLSD 136 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH--HHhhcCCCCceEEEecccccccHHHHHHcC-CccccCCChhccHHHHHHHHHH
Confidence 3567999999999999999987754 122111 1244444443333333322210 000 112344556666666666
Q ss_pred HhCCC
Q 001998 282 NIAGQ 286 (984)
Q Consensus 282 ~l~~k 286 (984)
...++
T Consensus 137 Lk~g~ 141 (290)
T TIGR00554 137 LKSGK 141 (290)
T ss_pred HHCCC
Confidence 55544
No 326
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=94.56 E-value=0.18 Score=59.50 Aligned_cols=135 Identities=15% Similarity=0.091 Sum_probs=72.7
Q ss_pred cCCcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHH
Q 001998 177 DVSEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAK 256 (984)
Q Consensus 177 ~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 256 (984)
....++|....++++.+.+..-.. ...-|.|+|..|+|||++|+.+++... ..-...+.|++..-.+ ..+.
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a~-----~~~pvli~Ge~GtGK~~lA~~ih~~s~--r~~~pfv~i~c~~~~~--~~~~ 264 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVAR-----SNSTVLLRGESGTGKELIAKAIHYLSP--RAKRPFVKVNCAALSE--TLLE 264 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHhC-----cCCCEEEECCCCccHHHHHHHHHHhCC--CCCCCeEEeecCCCCH--HHHH
Confidence 456899999999999888765432 223467999999999999999987421 1111234444443211 2222
Q ss_pred HHHHHhcCCCCCc-ccHHHHHHHHHHHhCCCceEEEEEcCCCCCcCChhhHHHhhcCCC-----------CCcEEEEEcc
Q 001998 257 AIIEELEGSATDL-HELNSLLRRIGANIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGL-----------RGSKILLTTR 324 (984)
Q Consensus 257 ~i~~~l~~~~~~~-~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iiiTtr 324 (984)
. .+.+...+. .... .......-....=.|+||+|..-.......+...+..+. ...|||.||.
T Consensus 265 ~---~lfg~~~~~~~~~~--~~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~ 339 (534)
T TIGR01817 265 S---ELFGHEKGAFTGAI--AQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATN 339 (534)
T ss_pred H---HHcCCCCCccCCCC--cCCCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCC
Confidence 2 121111000 0000 000000001233468899997655555566666664432 1358888876
Q ss_pred c
Q 001998 325 K 325 (984)
Q Consensus 325 ~ 325 (984)
.
T Consensus 340 ~ 340 (534)
T TIGR01817 340 R 340 (534)
T ss_pred C
Confidence 4
No 327
>PRK07667 uridine kinase; Provisional
Probab=94.56 E-value=0.041 Score=55.17 Aligned_cols=37 Identities=19% Similarity=0.218 Sum_probs=28.6
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhc
Q 001998 188 MRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 188 ~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
.+.+.+.+.... +...+|+|.|.+|.||||+|+.+..
T Consensus 3 ~~~~~~~~~~~~-----~~~~iIgI~G~~gsGKStla~~L~~ 39 (193)
T PRK07667 3 TNELINIMKKHK-----ENRFILGIDGLSRSGKTTFVANLKE 39 (193)
T ss_pred HHHHHHHHHhcC-----CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 355666665433 2458999999999999999999887
No 328
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=94.56 E-value=0.11 Score=63.23 Aligned_cols=135 Identities=16% Similarity=0.135 Sum_probs=73.1
Q ss_pred CcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHH
Q 001998 179 SEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAI 258 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 258 (984)
..++|+...++.+.+.+..-.. ...-|.|+|..|+|||++|+.+++... ..-...+.+++..-. ...+-..+
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~-----~~~pVLI~GE~GTGK~~lA~~ih~~s~--r~~~~~v~i~c~~~~-~~~~~~~l 447 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQ-----SDSTVLILGETGTGKELIARAIHNLSG--RNNRRMVKMNCAAMP-AGLLESDL 447 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhC-----CCCCEEEECCCCcCHHHHHHHHHHhcC--CCCCCeEEEecccCC-hhHhhhhh
Confidence 4789999999988777654321 233578999999999999999987421 111234445444322 11111222
Q ss_pred HHHhcCCCCCcccHHHHHHHHHHHhCCCceEEEEEcCCCCCcCChhhHHHhhcCCC-----------CCcEEEEEccch
Q 001998 259 IEELEGSATDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGL-----------RGSKILLTTRKE 326 (984)
Q Consensus 259 ~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iiiTtr~~ 326 (984)
.....+...+.. ......+. ....=.|+||+|..-.......+...+..+. .+.|||.||...
T Consensus 448 fg~~~~~~~g~~--~~~~g~le---~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~ 521 (686)
T PRK15429 448 FGHERGAFTGAS--AQRIGRFE---LADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRD 521 (686)
T ss_pred cCcccccccccc--cchhhHHH---hcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCC
Confidence 111111101100 01111121 1223469999997655555556666664321 345888888653
No 329
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=94.53 E-value=0.39 Score=48.79 Aligned_cols=53 Identities=15% Similarity=0.148 Sum_probs=31.4
Q ss_pred HHHHHhCCCceEEEEEcCCC-CCcCChhhHHHhhcCCCCCcEEEEEccchHHHh
Q 001998 278 RIGANIAGQKFFMVLDNLWT-DDYRKWEPFRNCLMNGLRGSKILLTTRKETVAR 330 (984)
Q Consensus 278 ~l~~~l~~kr~LlVlDdvw~-~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~v~~ 330 (984)
.+.+.+-.++=++++|+... -|....+.+...+.....|..||++|.+.....
T Consensus 135 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~ 188 (207)
T cd03369 135 CLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTII 188 (207)
T ss_pred HHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHh
Confidence 34455556777899999743 122333444455544334667888888766554
No 330
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=94.52 E-value=0.2 Score=52.28 Aligned_cols=21 Identities=29% Similarity=0.441 Sum_probs=18.2
Q ss_pred EEEEEecCcchHHHHHHHHhc
Q 001998 209 IFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~ 229 (984)
+..|+|.+|+|||+||..++-
T Consensus 3 ~~ll~g~~G~GKS~lal~la~ 23 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLAL 23 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHH
Confidence 567899999999999987764
No 331
>PRK13531 regulatory ATPase RavA; Provisional
Probab=94.51 E-value=0.048 Score=61.27 Aligned_cols=155 Identities=14% Similarity=0.166 Sum_probs=81.8
Q ss_pred cccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHH-
Q 001998 180 EVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAI- 258 (984)
Q Consensus 180 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i- 258 (984)
.++||++.++.+...+..+. -|.|.|.+|+|||++|+.+.......+.|.... +..+ ...+++..+
T Consensus 21 ~i~gre~vI~lll~aalag~---------hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~-~~ft---tp~DLfG~l~ 87 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSGE---------SVFLLGPPGIAKSLIARRLKFAFQNARAFEYLM-TRFS---TPEEVFGPLS 87 (498)
T ss_pred hccCcHHHHHHHHHHHccCC---------CEEEECCCChhHHHHHHHHHHHhcccCcceeee-eeec---CcHHhcCcHH
Confidence 57899999999999887554 378999999999999999987322222333211 1111 122222211
Q ss_pred HHHhcCCCCCcccHHHHHHHHHHHhCCCceEEEEEcCCCCCcCChhhHHHhhcCC---------CCCcEEEEEccchHHH
Q 001998 259 IEELEGSATDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNG---------LRGSKILLTTRKETVA 329 (984)
Q Consensus 259 ~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~---------~~gs~iiiTtr~~~v~ 329 (984)
+...... ... .......+. .--++++|+++......-..+...+... .-..++|+++.+.--.
T Consensus 88 i~~~~~~----g~f---~r~~~G~L~-~A~lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE 159 (498)
T PRK13531 88 IQALKDE----GRY---QRLTSGYLP-EAEIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPE 159 (498)
T ss_pred Hhhhhhc----Cch---hhhcCCccc-cccEEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcc
Confidence 1111000 000 000011111 1118999999876665556666665321 1123565555542111
Q ss_pred ------hhcCC-CCeEeCCCCChHh-HHHHHHHH
Q 001998 330 ------RMMES-TDIVYVQGLSEPE-CWSLFRRF 355 (984)
Q Consensus 330 ------~~~~~-~~~~~l~~L~~~~-~~~lf~~~ 355 (984)
..+.. .-.+.+.+++.++ -.+++...
T Consensus 160 ~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 160 ADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred cCCchHHhHhhEEEEEECCCCCchHHHHHHHHcc
Confidence 11111 2367789998544 47777653
No 332
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.51 E-value=0.095 Score=50.61 Aligned_cols=116 Identities=16% Similarity=0.111 Sum_probs=61.8
Q ss_pred EEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCC--CHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCC
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPF--DEFSVAKAIIEELEGSATDLHELNSLLRRIGANIAG 285 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 285 (984)
.+++|+|..|.|||||++.+..-. ......+++.-..-. ...... ..+.-... ...-+...-.+...+..
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~---~~~~G~i~~~~~~~~~~~~~~~~----~~i~~~~q-lS~G~~~r~~l~~~l~~ 97 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLL---KPTSGEILIDGKDIAKLPLEELR----RRIGYVPQ-LSGGQRQRVALARALLL 97 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCccEEEECCEEcccCCHHHHH----hceEEEee-CCHHHHHHHHHHHHHhc
Confidence 589999999999999999998732 234455554321111 111111 11111000 11112223335555666
Q ss_pred CceEEEEEcCCCC-CcCChhhHHHhhcCC-CCCcEEEEEccchHHHhh
Q 001998 286 QKFFMVLDNLWTD-DYRKWEPFRNCLMNG-LRGSKILLTTRKETVARM 331 (984)
Q Consensus 286 kr~LlVlDdvw~~-~~~~~~~l~~~l~~~-~~gs~iiiTtr~~~v~~~ 331 (984)
.+=++++|+.-.. |......+...+... ..+.-+|++|.+......
T Consensus 98 ~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 98 NPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 6789999997431 222233344444321 125678888888766554
No 333
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=94.47 E-value=0.15 Score=52.67 Aligned_cols=25 Identities=32% Similarity=0.450 Sum_probs=22.8
Q ss_pred CceEEEEEEecCcchHHHHHHHHhc
Q 001998 205 NTVQIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 205 ~~~~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
....+++|.|..|.|||||++.+..
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999999887
No 334
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=94.46 E-value=0.2 Score=49.08 Aligned_cols=118 Identities=15% Similarity=0.013 Sum_probs=65.8
Q ss_pred eEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecC---CCCHHHHHHHHH--HHh--cCC----C-CCc---cc
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSD---PFDEFSVAKAII--EEL--EGS----A-TDL---HE 271 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~---~~~~~~~~~~i~--~~l--~~~----~-~~~---~~ 271 (984)
...|-|+|-.|-||||.|..+.- +..++=-.+..|.+-. .......++.+- ... +.. . ... ..
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~--ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~ 99 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMAL--RAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAA 99 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHH--HHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHH
Confidence 45788999999999999966554 2323222333443332 234444444321 000 000 0 011 11
Q ss_pred HHHHHHHHHHHhCCCce-EEEEEcCCC---CCcCChhhHHHhhcCCCCCcEEEEEccch
Q 001998 272 LNSLLRRIGANIAGQKF-FMVLDNLWT---DDYRKWEPFRNCLMNGLRGSKILLTTRKE 326 (984)
Q Consensus 272 ~~~~~~~l~~~l~~kr~-LlVlDdvw~---~~~~~~~~l~~~l~~~~~gs~iiiTtr~~ 326 (984)
........++.+...+| |||||.+-. ...-..+++...+.....+..||+|-|+.
T Consensus 100 ~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 100 AREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 12234445555555555 999999732 22334567777777767788999999985
No 335
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=94.45 E-value=0.091 Score=57.47 Aligned_cols=134 Identities=13% Similarity=0.058 Sum_probs=70.9
Q ss_pred cccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHHH
Q 001998 180 EVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAII 259 (984)
Q Consensus 180 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 259 (984)
.++|+...++++.+.+..-.. .-.-|.|+|..|+||+++|+.+..... ..-...+.|++..-. ...+...+.
T Consensus 7 ~liG~S~~~~~~~~~i~~~a~-----~~~pVlI~GE~GtGK~~lA~~iH~~s~--r~~~pfv~v~c~~~~-~~~~~~~lf 78 (326)
T PRK11608 7 NLLGEANSFLEVLEQVSRLAP-----LDKPVLIIGERGTGKELIASRLHYLSS--RWQGPFISLNCAALN-ENLLDSELF 78 (326)
T ss_pred ccEECCHHHHHHHHHHHHHhC-----CCCCEEEECCCCCcHHHHHHHHHHhCC--ccCCCeEEEeCCCCC-HHHHHHHHc
Confidence 588999999988888765432 223577999999999999999885311 111223444554422 222222222
Q ss_pred HHhcCCCCCcccHHHHHHHHHHHhCCCceEEEEEcCCCCCcCChhhHHHhhcCCC-----------CCcEEEEEccch
Q 001998 260 EELEGSATDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGL-----------RGSKILLTTRKE 326 (984)
Q Consensus 260 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iiiTtr~~ 326 (984)
..-.+...+... .....+. ....=.|+||||..-.......+...+..+. ...|||.||...
T Consensus 79 g~~~~~~~g~~~--~~~g~l~---~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~ 151 (326)
T PRK11608 79 GHEAGAFTGAQK--RHPGRFE---RADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNAD 151 (326)
T ss_pred cccccccCCccc--ccCCchh---ccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchh
Confidence 111100000000 0001111 1222358899997655555566666664432 135888887653
No 336
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=94.43 E-value=0.17 Score=55.17 Aligned_cols=57 Identities=18% Similarity=0.140 Sum_probs=40.3
Q ss_pred ceEEEEEEecCcchHHHHHHHHhcCcccc----cCCCeEEEEEecCCCCHHHHHHHHHHHhc
Q 001998 206 TVQIFSMVGMGGIGKTTLAQLAYNDNDVI----NNFEIRVWVCVSDPFDEFSVAKAIIEELE 263 (984)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 263 (984)
.-+++-|+|.+|+||||+|.+++-..... ..=..++||+....|+..++. ++++.++
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~g 154 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARG 154 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcC
Confidence 46788999999999999998886532221 111378999998888887654 4444443
No 337
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=94.40 E-value=0.074 Score=49.58 Aligned_cols=44 Identities=23% Similarity=0.320 Sum_probs=32.5
Q ss_pred EEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHHHHHhcCC
Q 001998 209 IFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAIIEELEGS 265 (984)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 265 (984)
+|.|.|.+|.||||+|+.+.++... .| | +.-.++++|++..+.+
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl--~~-----v------saG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGL--KL-----V------SAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCC--ce-----e------eccHHHHHHHHHcCCC
Confidence 6899999999999999999984221 11 1 2336888998887653
No 338
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.40 E-value=0.12 Score=51.09 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=21.2
Q ss_pred eEEEEEEecCcchHHHHHHHHhcC
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
-.+++|+|..|.|||||++.+..-
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999863
No 339
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.37 E-value=0.096 Score=49.96 Aligned_cols=22 Identities=27% Similarity=0.531 Sum_probs=19.6
Q ss_pred EEEEEecCcchHHHHHHHHhcC
Q 001998 209 IFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
|+.|+|.+|.||||+|+.+...
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~ 22 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEK 22 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999999998873
No 340
>PHA02244 ATPase-like protein
Probab=94.35 E-value=0.24 Score=53.80 Aligned_cols=21 Identities=24% Similarity=0.314 Sum_probs=19.0
Q ss_pred EEEEecCcchHHHHHHHHhcC
Q 001998 210 FSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 210 i~I~G~gGiGKTtLa~~v~~~ 230 (984)
|.|+|..|+|||+||+.++..
T Consensus 122 VLL~GppGtGKTtLA~aLA~~ 142 (383)
T PHA02244 122 VFLKGGAGSGKNHIAEQIAEA 142 (383)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999999873
No 341
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.34 E-value=0.1 Score=59.17 Aligned_cols=89 Identities=15% Similarity=0.075 Sum_probs=45.5
Q ss_pred ceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecC-CCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhC
Q 001998 206 TVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSD-PFDEFSVAKAIIEELEGSATDLHELNSLLRRIGANIA 284 (984)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 284 (984)
..++++|+|.+|+||||++.++......+.....+..++... .....+.++...+.++.......+...+...+++ +.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~-l~ 427 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLER-LR 427 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHH-hc
Confidence 357999999999999999988876321121123445554322 1122233333333332221122233344444433 23
Q ss_pred CCceEEEEEcCC
Q 001998 285 GQKFFMVLDNLW 296 (984)
Q Consensus 285 ~kr~LlVlDdvw 296 (984)
+ .=+|++|..-
T Consensus 428 ~-~DLVLIDTaG 438 (559)
T PRK12727 428 D-YKLVLIDTAG 438 (559)
T ss_pred c-CCEEEecCCC
Confidence 3 4578888873
No 342
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.33 E-value=0.2 Score=52.96 Aligned_cols=88 Identities=15% Similarity=0.124 Sum_probs=47.1
Q ss_pred ceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCH--HHHHHHHHHHhcCC---CCCcccH-HHHHHHH
Q 001998 206 TVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDE--FSVAKAIIEELEGS---ATDLHEL-NSLLRRI 279 (984)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~--~~~~~~i~~~l~~~---~~~~~~~-~~~~~~l 279 (984)
..+++.++|.+|+||||++.+++.. ....-..++++... .+.. .+-++...+..+.. .....+. ......+
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~--l~~~g~~V~li~~D-~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l 147 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANK--LKKQGKSVLLAAGD-TFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAI 147 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEeCC-CCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHH
Confidence 4689999999999999999888763 32332345566543 2322 23333334443321 0111222 2223334
Q ss_pred HHHhCCCceEEEEEcCC
Q 001998 280 GANIAGQKFFMVLDNLW 296 (984)
Q Consensus 280 ~~~l~~kr~LlVlDdvw 296 (984)
........=++++|-.-
T Consensus 148 ~~~~~~~~D~ViIDT~G 164 (272)
T TIGR00064 148 QKAKARNIDVVLIDTAG 164 (272)
T ss_pred HHHHHCCCCEEEEeCCC
Confidence 44334444578888763
No 343
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=94.33 E-value=0.028 Score=52.04 Aligned_cols=21 Identities=33% Similarity=0.495 Sum_probs=19.0
Q ss_pred EEEEecCcchHHHHHHHHhcC
Q 001998 210 FSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 210 i~I~G~gGiGKTtLa~~v~~~ 230 (984)
|+|.|..|+||||+|+.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999998873
No 344
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.31 E-value=0.11 Score=59.69 Aligned_cols=72 Identities=19% Similarity=0.077 Sum_probs=48.2
Q ss_pred eEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCC--CHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhC
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPF--DEFSVAKAIIEELEGSATDLHELNSLLRRIGANIA 284 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 284 (984)
..-|.|.|..|+|||+||+.+++... +.+.-.+.+|+++.-. ..+.+++ .+...+.+.+.
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk-----------------~l~~vfse~~~ 492 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQK-----------------FLNNVFSEALW 492 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHH-----------------HHHHHHHHHHh
Confidence 44688999999999999999998533 4444556667665321 1222221 23334556677
Q ss_pred CCceEEEEEcCC
Q 001998 285 GQKFFMVLDNLW 296 (984)
Q Consensus 285 ~kr~LlVlDdvw 296 (984)
..+-+|||||+.
T Consensus 493 ~~PSiIvLDdld 504 (952)
T KOG0735|consen 493 YAPSIIVLDDLD 504 (952)
T ss_pred hCCcEEEEcchh
Confidence 889999999984
No 345
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.25 E-value=0.32 Score=51.89 Aligned_cols=54 Identities=13% Similarity=0.124 Sum_probs=36.7
Q ss_pred eEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHHHHHhc
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAIIEELE 263 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 263 (984)
-.++.|.|.+|+||||++.++.... ...+=..++|++... ...++...+...+.
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~-~~~~g~~vl~iS~E~--~~~~~~~r~~~~~~ 83 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDL-ITQHGVRVGTISLEE--PVVRTARRLLGQYA 83 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH-HHhcCceEEEEEccc--CHHHHHHHHHHHHh
Confidence 4578899999999999998887631 122234678887655 44566666655543
No 346
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.22 E-value=0.063 Score=54.67 Aligned_cols=23 Identities=17% Similarity=0.199 Sum_probs=20.5
Q ss_pred eEEEEEEecCcchHHHHHHHHhc
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
.+++.|+|..|.||||+.+.+.-
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 47889999999999999998873
No 347
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.17 E-value=0.038 Score=56.24 Aligned_cols=26 Identities=35% Similarity=0.438 Sum_probs=22.9
Q ss_pred CceEEEEEEecCcchHHHHHHHHhcC
Q 001998 205 NTVQIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 205 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
+...+|+|+|.+|.||||||+.+...
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 35679999999999999999999863
No 348
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=94.15 E-value=0.069 Score=48.11 Aligned_cols=51 Identities=14% Similarity=0.238 Sum_probs=35.3
Q ss_pred cccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcC
Q 001998 180 EVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 180 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
.++|.+-..+.+++.+..--.....+..-|++.+|..|+|||.+++.+++.
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 567777666666665543221112456789999999999999988777664
No 349
>PRK13948 shikimate kinase; Provisional
Probab=94.14 E-value=0.23 Score=48.99 Aligned_cols=25 Identities=20% Similarity=0.299 Sum_probs=21.9
Q ss_pred ceEEEEEEecCcchHHHHHHHHhcC
Q 001998 206 TVQIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
..+.|.++|+.|+||||+++.+.+.
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~ 33 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRA 33 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4567889999999999999999873
No 350
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=94.14 E-value=0.39 Score=49.09 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=21.3
Q ss_pred eEEEEEEecCcchHHHHHHHHhcC
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
-.+++|+|..|.|||||++.+..-
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 25 GEFLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCC
Confidence 358999999999999999999874
No 351
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.13 E-value=0.27 Score=50.01 Aligned_cols=62 Identities=10% Similarity=0.021 Sum_probs=36.6
Q ss_pred HHHHhCCCceEEEEEcCCC-CCcCChhhHHHhhcC-CCCCcEEEEEccchHHHhhcCCCCeEeCCCC
Q 001998 279 IGANIAGQKFFMVLDNLWT-DDYRKWEPFRNCLMN-GLRGSKILLTTRKETVARMMESTDIVYVQGL 343 (984)
Q Consensus 279 l~~~l~~kr~LlVlDdvw~-~~~~~~~~l~~~l~~-~~~gs~iiiTtr~~~v~~~~~~~~~~~l~~L 343 (984)
+...+-.++-++++|+--. -|......+...+.. ...|..||++|.+...... ...+.++..
T Consensus 138 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~---~~~~~~~~~ 201 (207)
T PRK13539 138 LARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG---ARELDLGPF 201 (207)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc---CcEEeecCc
Confidence 4455556778999999643 122233445454543 2346678999888665443 556666553
No 352
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=94.11 E-value=0.31 Score=50.07 Aligned_cols=123 Identities=15% Similarity=0.133 Sum_probs=65.9
Q ss_pred EEEEEEecCcchHHHHHHHHhcCcc-----cc--c----CC---CeEEEEEecCC------CCH----------------
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYNDND-----VI--N----NF---EIRVWVCVSDP------FDE---------------- 251 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~~~-----~~--~----~F---~~~~wv~~s~~------~~~---------------- 251 (984)
.+++|+|+.|.|||||.+.+..-.+ +. + .+ ..+.||.-... .++
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~ 110 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR 110 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccc
Confidence 5899999999999999999987211 10 0 01 23556531111 111
Q ss_pred ------HHHHHHHHHHhcCCC-----CCcccHHHHHH-HHHHHhCCCceEEEEEcCCC-CCcCChhhHHHhhcC-CCCCc
Q 001998 252 ------FSVAKAIIEELEGSA-----TDLHELNSLLR-RIGANIAGQKFFMVLDNLWT-DDYRKWEPFRNCLMN-GLRGS 317 (984)
Q Consensus 252 ------~~~~~~i~~~l~~~~-----~~~~~~~~~~~-~l~~~l~~kr~LlVlDdvw~-~~~~~~~~l~~~l~~-~~~gs 317 (984)
.+...+.++.++... -..-.-.+.++ .+.+.|..++=|++||.--. -|...-..+...+.. ...|.
T Consensus 111 ~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~ 190 (254)
T COG1121 111 RLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGK 190 (254)
T ss_pred cccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCC
Confidence 133334444443221 11112223333 46678889999999998532 111122223333332 12288
Q ss_pred EEEEEccchHHHh
Q 001998 318 KILLTTRKETVAR 330 (984)
Q Consensus 318 ~iiiTtr~~~v~~ 330 (984)
-||+.|.+-+...
T Consensus 191 tIl~vtHDL~~v~ 203 (254)
T COG1121 191 TVLMVTHDLGLVM 203 (254)
T ss_pred EEEEEeCCcHHhH
Confidence 8999999865433
No 353
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=94.08 E-value=0.49 Score=52.65 Aligned_cols=22 Identities=36% Similarity=0.638 Sum_probs=19.8
Q ss_pred EEEEEEecCcchHHHHHHHHhc
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
.+++|+|+.|.||||||+.+..
T Consensus 363 ~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred ceEEEECCCCccHHHHHHHHHc
Confidence 4799999999999999998865
No 354
>PRK03846 adenylylsulfate kinase; Provisional
Probab=94.08 E-value=0.12 Score=52.15 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=22.0
Q ss_pred ceEEEEEEecCcchHHHHHHHHhc
Q 001998 206 TVQIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
...+++|+|++|.||||||+.+..
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~ 46 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEE 46 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 567999999999999999999987
No 355
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.07 E-value=0.033 Score=45.03 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=19.5
Q ss_pred EEEEEecCcchHHHHHHHHhcC
Q 001998 209 IFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
+++|.|..|+||||+|+.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999988873
No 356
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=94.04 E-value=0.12 Score=52.30 Aligned_cols=82 Identities=18% Similarity=0.304 Sum_probs=50.9
Q ss_pred EEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCC-CCHHHHHHHHHHHhcC-------CCCCcccHH------
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDP-FDEFSVAKAIIEELEG-------SATDLHELN------ 273 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~-------~~~~~~~~~------ 273 (984)
..++|+|..|+|||+|+..+.+.. .-+..+++.+.+. ..+.++.+++...-.. ...+.....
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~----~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~ 91 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQ----DADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPY 91 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHC----TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhcc----cccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhc
Confidence 357899999999999999998743 2344588888755 4556666666443110 011111111
Q ss_pred ---HHHHHHHHHhCCCceEEEEEcC
Q 001998 274 ---SLLRRIGANIAGQKFFMVLDNL 295 (984)
Q Consensus 274 ---~~~~~l~~~l~~kr~LlVlDdv 295 (984)
...+.++. ++|.+|+++||+
T Consensus 92 ~a~t~AEyfrd--~G~dVlli~Dsl 114 (215)
T PF00006_consen 92 TALTIAEYFRD--QGKDVLLIIDSL 114 (215)
T ss_dssp HHHHHHHHHHH--TTSEEEEEEETH
T ss_pred cchhhhHHHhh--cCCceeehhhhh
Confidence 12333333 699999999998
No 357
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.04 E-value=0.85 Score=51.12 Aligned_cols=24 Identities=29% Similarity=0.381 Sum_probs=21.3
Q ss_pred ceEEEEEEecCcchHHHHHHHHhc
Q 001998 206 TVQIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
...+|.++|..|+||||+|.+++.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~ 122 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAY 122 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999988865
No 358
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.02 E-value=0.44 Score=49.04 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=20.7
Q ss_pred EEEEEEecCcchHHHHHHHHhcC
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
.+++|+|..|.|||||++.+...
T Consensus 31 e~~~i~G~nGsGKSTLl~~l~G~ 53 (221)
T cd03244 31 EKVGIVGRTGSGKSSLLLALFRL 53 (221)
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 58999999999999999999863
No 359
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.00 E-value=0.04 Score=56.21 Aligned_cols=25 Identities=36% Similarity=0.550 Sum_probs=22.6
Q ss_pred ceEEEEEEecCcchHHHHHHHHhcC
Q 001998 206 TVQIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
...+|+|+|.+|+||||||+.++..
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 5679999999999999999999873
No 360
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=94.00 E-value=0.46 Score=48.85 Aligned_cols=24 Identities=29% Similarity=0.343 Sum_probs=21.3
Q ss_pred eEEEEEEecCcchHHHHHHHHhcC
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
-.+++|+|..|.|||||++.+..-
T Consensus 30 G~~~~i~G~nGsGKSTLl~~i~G~ 53 (220)
T cd03245 30 GEKVAIIGRVGSGKSTLLKLLAGL 53 (220)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999863
No 361
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.00 E-value=0.12 Score=57.01 Aligned_cols=82 Identities=20% Similarity=0.219 Sum_probs=50.5
Q ss_pred CcccccHHHHHHHHHHHhcC------CCCC-CCCceEEEEEEecCcchHHHHHHHHhcCcccccCC---CeEEEEEec-C
Q 001998 179 SEVRGRDEEMRTLKSMLLCQ------GSDQ-QTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNF---EIRVWVCVS-D 247 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~------~~~~-~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~~s-~ 247 (984)
..++|.++.++.+...+... ..+. .....+-|.++|++|+|||++|+.+... ....| +..-++..+ .
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~--l~~~fi~vdat~~~e~g~v 89 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKL--ANAPFIKVEATKFTEVGYV 89 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHH--hCCeEEEeecceeecCCcc
Confidence 45889999999887766642 0000 0112356889999999999999999873 33433 222222221 2
Q ss_pred CCCHHHHHHHHHHHh
Q 001998 248 PFDEFSVAKAIIEEL 262 (984)
Q Consensus 248 ~~~~~~~~~~i~~~l 262 (984)
..+..++++.+....
T Consensus 90 G~dvE~i~r~l~e~A 104 (441)
T TIGR00390 90 GRDVESMVRDLTDAA 104 (441)
T ss_pred cCCHHHHHHHHHHHH
Confidence 235667777666554
No 362
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.00 E-value=0.22 Score=54.14 Aligned_cols=90 Identities=12% Similarity=0.074 Sum_probs=52.8
Q ss_pred ceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCC-CCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhC
Q 001998 206 TVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDP-FDEFSVAKAIIEELEGSATDLHELNSLLRRIGANIA 284 (984)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 284 (984)
..+++.++|..|+||||++..+... ....-..+.+|+.... ....+-++...+.++.......+..++...+...-.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~--l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~ 282 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQ--LLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTY 282 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHh
Confidence 4679999999999999999888763 2222234666665432 223445555555554432222344555554443321
Q ss_pred -CCceEEEEEcCCC
Q 001998 285 -GQKFFMVLDNLWT 297 (984)
Q Consensus 285 -~kr~LlVlDdvw~ 297 (984)
+..=+|++|-.-.
T Consensus 283 ~~~~D~VLIDTAGr 296 (407)
T PRK12726 283 VNCVDHILIDTVGR 296 (407)
T ss_pred cCCCCEEEEECCCC
Confidence 3345788887743
No 363
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.98 E-value=0.42 Score=48.36 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=21.4
Q ss_pred eEEEEEEecCcchHHHHHHHHhcC
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
-.+++|+|..|.|||||++.+..-
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (202)
T cd03233 33 GEMVLVLGRPGSGCSTLLKALANR 56 (202)
T ss_pred CcEEEEECCCCCCHHHHHHHhccc
Confidence 358999999999999999998874
No 364
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.95 E-value=0.017 Score=58.28 Aligned_cols=63 Identities=21% Similarity=0.139 Sum_probs=41.4
Q ss_pred cCCcccEEecccccccccccccccCCCCCCeEEeccC--CCcccCCccCCCCCCCCcCCceEecCCC
Q 001998 635 KLFNLQTLDINECYRLKRLPQGVGSLVNLRHLVVSLN--GDLDYLPKGVERLTSLRTLREFVVSSTG 699 (984)
Q Consensus 635 ~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~--~~l~~~p~~i~~l~~L~~L~~~~~~~~~ 699 (984)
.+.+|+.|.+.++. ++.+-. +-.|++|+.|.++.| .....++....++++|++|.+..+....
T Consensus 41 ~~~~le~ls~~n~g-ltt~~~-~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~ 105 (260)
T KOG2739|consen 41 EFVELELLSVINVG-LTTLTN-FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD 105 (260)
T ss_pred cccchhhhhhhccc-eeeccc-CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc
Confidence 45566666666655 333322 445889999999988 4444555555667999999887766543
No 365
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=93.95 E-value=0.34 Score=50.39 Aligned_cols=50 Identities=16% Similarity=0.256 Sum_probs=34.8
Q ss_pred CceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHH
Q 001998 205 NTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAI 258 (984)
Q Consensus 205 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 258 (984)
+.-+++.|.|.+|.|||++|.++... .. ..-..++||+... +..++.+.+
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~-~~-~~ge~~lyvs~ee--~~~~i~~~~ 68 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWN-GL-QMGEPGIYVALEE--HPVQVRRNM 68 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHH-HH-HcCCcEEEEEeeC--CHHHHHHHH
Confidence 35678999999999999999876542 12 3345788887654 555555553
No 366
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.90 E-value=0.6 Score=48.49 Aligned_cols=53 Identities=9% Similarity=0.097 Sum_probs=31.4
Q ss_pred HHHHhCCCceEEEEEcCCC-CCcCChhhHHHhhcCCCCCcEEEEEccchHHHhh
Q 001998 279 IGANIAGQKFFMVLDNLWT-DDYRKWEPFRNCLMNGLRGSKILLTTRKETVARM 331 (984)
Q Consensus 279 l~~~l~~kr~LlVlDdvw~-~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~v~~~ 331 (984)
+...+-.++=+++||+.-+ -|......+...+..-..+..||++|.+......
T Consensus 149 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 202 (234)
T cd03251 149 IARALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIEN 202 (234)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh
Confidence 4445555667999999743 2223334455555443346678888888766543
No 367
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=93.89 E-value=0.22 Score=50.23 Aligned_cols=119 Identities=13% Similarity=0.103 Sum_probs=60.4
Q ss_pred eEEEEEEecCcchHHHHHHHHhcCc--c-cccC--CC--------------e-EEEEEecCCCCH--HHHHHHHHHHhcC
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYNDN--D-VINN--FE--------------I-RVWVCVSDPFDE--FSVAKAIIEELEG 264 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~--~-~~~~--F~--------------~-~~wv~~s~~~~~--~~~~~~i~~~l~~ 264 (984)
-.+++|+|..|.|||||.+.+.... . ..+. |+ . +.++ .+.... .....+++...
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v--~q~~~~~~~~~~~~~l~~~-- 101 (200)
T cd03217 26 GEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLA--FQYPPEIPGVKNADFLRYV-- 101 (200)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEe--ecChhhccCccHHHHHhhc--
Confidence 3589999999999999999988751 1 1110 00 0 1122 111110 01111111111
Q ss_pred CCCCcccHHHHHHHHHHHhCCCceEEEEEcCCC-CCcCChhhHHHhhcCC-CCCcEEEEEccchHHHh
Q 001998 265 SATDLHELNSLLRRIGANIAGQKFFMVLDNLWT-DDYRKWEPFRNCLMNG-LRGSKILLTTRKETVAR 330 (984)
Q Consensus 265 ~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~-~~~~~~~~l~~~l~~~-~~gs~iiiTtr~~~v~~ 330 (984)
....+.-+...-.+...+-..+=++++|+.-. -|......+...+..- ..|.-||++|.+...+.
T Consensus 102 -~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~ 168 (200)
T cd03217 102 -NEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLD 168 (200)
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHH
Confidence 01112222233345566667778999999743 2222233344444332 23667888888876655
No 368
>PTZ00088 adenylate kinase 1; Provisional
Probab=93.88 E-value=0.16 Score=52.07 Aligned_cols=21 Identities=29% Similarity=0.559 Sum_probs=19.2
Q ss_pred EEEEecCcchHHHHHHHHhcC
Q 001998 210 FSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 210 i~I~G~gGiGKTtLa~~v~~~ 230 (984)
|.|+|++|+||||+|+.+...
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 889999999999999998763
No 369
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=93.84 E-value=0.2 Score=52.73 Aligned_cols=40 Identities=13% Similarity=0.202 Sum_probs=29.5
Q ss_pred ceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecC
Q 001998 206 TVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSD 247 (984)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~ 247 (984)
.-+++.|.|.+|.||||+|.++... ....=..+++++...
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~--~a~~Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVT--QASRGNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH--HHhCCCcEEEEEecC
Confidence 4578999999999999999887542 212234678888764
No 370
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.83 E-value=0.49 Score=48.96 Aligned_cols=54 Identities=11% Similarity=0.172 Sum_probs=31.8
Q ss_pred HHHHHhCCCceEEEEEcCCC-CCcCChhhHHHhhcCCCCCcEEEEEccchHHHhh
Q 001998 278 RIGANIAGQKFFMVLDNLWT-DDYRKWEPFRNCLMNGLRGSKILLTTRKETVARM 331 (984)
Q Consensus 278 ~l~~~l~~kr~LlVlDdvw~-~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~v~~~ 331 (984)
.+...+-.++=+++||+-.. -|......+...+..-..|..||++|.+......
T Consensus 149 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 203 (229)
T cd03254 149 AIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKN 203 (229)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh
Confidence 34455566778999999743 2222333344444432346678888888766543
No 371
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.82 E-value=0.041 Score=30.48 Aligned_cols=16 Identities=38% Similarity=0.725 Sum_probs=7.0
Q ss_pred ccceEEecCCCccccc
Q 001998 615 HLRSLRLAGLKIEELP 630 (984)
Q Consensus 615 ~Lr~L~L~~~~i~~lp 630 (984)
+|+.|+|++|.++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4556666666555554
No 372
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=93.80 E-value=0.17 Score=55.24 Aligned_cols=45 Identities=13% Similarity=0.099 Sum_probs=33.6
Q ss_pred ccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcC
Q 001998 181 VRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 181 ~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
++|....++++.+.+..-.. .-.-|.|+|..|+||+++|+.+.+.
T Consensus 1 liG~S~~m~~~~~~~~~~a~-----~~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAP-----LDRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhC-----CCCCEEEECCCCChHHHHHHHHHHh
Confidence 46777777777777655432 2234789999999999999999763
No 373
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.76 E-value=0.062 Score=56.85 Aligned_cols=85 Identities=21% Similarity=0.268 Sum_probs=43.0
Q ss_pred EEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCc
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAIIEELEGSATDLHELNSLLRRIGANIAGQK 287 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 287 (984)
+-+.++|..|+|||++++...+... ...| ...-++.+..-+...+ +.++++-....... ...--.+|+
T Consensus 34 ~pvLl~G~~GtGKT~li~~~l~~l~-~~~~-~~~~~~~s~~Tts~~~-q~~ie~~l~k~~~~---------~~gP~~~k~ 101 (272)
T PF12775_consen 34 RPVLLVGPSGTGKTSLIQNFLSSLD-SDKY-LVITINFSAQTTSNQL-QKIIESKLEKRRGR---------VYGPPGGKK 101 (272)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCST-TCCE-EEEEEES-TTHHHHHH-HHCCCTTECECTTE---------EEEEESSSE
T ss_pred CcEEEECCCCCchhHHHHhhhccCC-cccc-ceeEeeccCCCCHHHH-HHHHhhcEEcCCCC---------CCCCCCCcE
Confidence 3468999999999999998876311 1121 2334555554333333 22222211100000 000114789
Q ss_pred eEEEEEcCCCCCcCChh
Q 001998 288 FFMVLDNLWTDDYRKWE 304 (984)
Q Consensus 288 ~LlVlDdvw~~~~~~~~ 304 (984)
.++++||+--...+.|.
T Consensus 102 lv~fiDDlN~p~~d~yg 118 (272)
T PF12775_consen 102 LVLFIDDLNMPQPDKYG 118 (272)
T ss_dssp EEEEEETTT-S---TTS
T ss_pred EEEEecccCCCCCCCCC
Confidence 99999999655555554
No 374
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.76 E-value=0.47 Score=49.37 Aligned_cols=54 Identities=13% Similarity=0.126 Sum_probs=32.9
Q ss_pred HHHHHhCCCceEEEEEcCCC-CCcCChhhHHHhhcCCCCCcEEEEEccchHHHhh
Q 001998 278 RIGANIAGQKFFMVLDNLWT-DDYRKWEPFRNCLMNGLRGSKILLTTRKETVARM 331 (984)
Q Consensus 278 ~l~~~l~~kr~LlVlDdvw~-~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~v~~~ 331 (984)
.+...+-.++=+++||+..+ -|......+...+..-..|..||++|.+......
T Consensus 147 ~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~ 201 (236)
T cd03253 147 AIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVN 201 (236)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHh
Confidence 34556667788999999753 2222334455555442236678888888766543
No 375
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=93.74 E-value=0.44 Score=54.30 Aligned_cols=130 Identities=22% Similarity=0.263 Sum_probs=73.0
Q ss_pred eEEEEEEecCcchHHH-HHHHHhcCcccccCCCeEEEEEecCCCC--HHHHHHHHHHHhcCCCC----------C-----
Q 001998 207 VQIFSMVGMGGIGKTT-LAQLAYNDNDVINNFEIRVWVCVSDPFD--EFSVAKAIIEELEGSAT----------D----- 268 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTt-La~~v~~~~~~~~~F~~~~wv~~s~~~~--~~~~~~~i~~~l~~~~~----------~----- 268 (984)
-.||.|||..|.|||| |||.+|.+ .|...--|.+.++.. ...+.+.+.+++++.-. +
T Consensus 371 n~vvvivgETGSGKTTQl~QyL~ed-----GY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYsIRFEdvT~~~ 445 (1042)
T KOG0924|consen 371 NQVVVIVGETGSGKTTQLAQYLYED-----GYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYSIRFEDVTSED 445 (1042)
T ss_pred CcEEEEEecCCCCchhhhHHHHHhc-----ccccCCeeeecCchHHHHHHHHHHHHHHhCCccccccceEEEeeecCCCc
Confidence 4689999999999987 66777764 232222445555544 34566777777743210 0
Q ss_pred -----cccHHHHHHHHHHHhCCCceEEEEEcCCCCCcCChhhHHHhhc---CCCCCcEEEEEccch---HHHhhcCCCCe
Q 001998 269 -----LHELNSLLRRIGANIAGQKFFMVLDNLWTDDYRKWEPFRNCLM---NGLRGSKILLTTRKE---TVARMMESTDI 337 (984)
Q Consensus 269 -----~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~---~~~~gs~iiiTtr~~---~v~~~~~~~~~ 337 (984)
..+---+.+.|....-+|=-.||+|.+.+.. -.-+.+...+. .....-|+||||-.. ..++.++..+.
T Consensus 446 T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERs-lNtDilfGllk~~larRrdlKliVtSATm~a~kf~nfFgn~p~ 524 (1042)
T KOG0924|consen 446 TKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERS-LNTDILFGLLKKVLARRRDLKLIVTSATMDAQKFSNFFGNCPQ 524 (1042)
T ss_pred eeEEEeccchHHHHHhhhhhhhheeEEEechhhhcc-cchHHHHHHHHHHHHhhccceEEEeeccccHHHHHHHhCCCce
Confidence 0121223334444444555689999985432 22233333322 234578999998764 34555565554
Q ss_pred EeCCC
Q 001998 338 VYVQG 342 (984)
Q Consensus 338 ~~l~~ 342 (984)
+.+++
T Consensus 525 f~IpG 529 (1042)
T KOG0924|consen 525 FTIPG 529 (1042)
T ss_pred eeecC
Confidence 44443
No 376
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=93.71 E-value=0.4 Score=48.13 Aligned_cols=118 Identities=14% Similarity=0.096 Sum_probs=58.5
Q ss_pred eEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEE---------------EecCCC---CHHHHHHHHHHHhcCCCCC
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWV---------------CVSDPF---DEFSVAKAIIEELEGSATD 268 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv---------------~~s~~~---~~~~~~~~i~~~l~~~~~~ 268 (984)
-.+++|.|..|.|||||.+.+..-.. .......+++ .+.+.. ....+...+....... .
T Consensus 35 Ge~~~l~G~nGsGKStLl~~i~Gl~~-~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~--~ 111 (194)
T cd03213 35 GELTAIMGPSGAGKSTLLNALAGRRT-GLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR--G 111 (194)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC-CCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhc--c
Confidence 35899999999999999999987320 0112222211 111111 1112222221110000 1
Q ss_pred cccHHHHHHHHHHHhCCCceEEEEEcCCC-CCcCChhhHHHhhcCC-CCCcEEEEEccchH
Q 001998 269 LHELNSLLRRIGANIAGQKFFMVLDNLWT-DDYRKWEPFRNCLMNG-LRGSKILLTTRKET 327 (984)
Q Consensus 269 ~~~~~~~~~~l~~~l~~kr~LlVlDdvw~-~~~~~~~~l~~~l~~~-~~gs~iiiTtr~~~ 327 (984)
.+.-+...-.+...+-.++=++++|+.-+ -|......+...+..- ..|.-||++|.+..
T Consensus 112 LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 172 (194)
T cd03213 112 LSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPS 172 (194)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch
Confidence 11122222345555666777999999743 1222333444444432 23667888888753
No 377
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.69 E-value=0.096 Score=52.83 Aligned_cols=119 Identities=13% Similarity=0.186 Sum_probs=59.9
Q ss_pred eEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCc-------ccHHHHHHHH
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAIIEELEGSATDL-------HELNSLLRRI 279 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~-------~~~~~~~~~l 279 (984)
.+++.|.|..|.||||+.+.+.... +..+. ..+|.+.. .. -.++..|...+.....-. .+..++...+
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~-~la~~--G~~vpa~~-~~-l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il 103 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLA-IMAQI--GCFVPAEY-AT-LPIFNRLLSRLSNDDSMERNLSTFASEMSETAYIL 103 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHHHc--CCCcchhh-cC-ccChhheeEecCCccccchhhhHHHHHHHHHHHHH
Confidence 4789999999999999998886431 11111 11111110 00 122223333332221111 1122222222
Q ss_pred HHHhCCCceEEEEEcCCCC-CcCChh----hHHHhhcCCCCCcEEEEEccchHHHhhcCC
Q 001998 280 GANIAGQKFFMVLDNLWTD-DYRKWE----PFRNCLMNGLRGSKILLTTRKETVARMMES 334 (984)
Q Consensus 280 ~~~l~~kr~LlVlDdvw~~-~~~~~~----~l~~~l~~~~~gs~iiiTtr~~~v~~~~~~ 334 (984)
. +..++-|+++|..-.. +..+.. .+...+.. .|+.+|++|.+.+++..+..
T Consensus 104 -~-~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~~~ 159 (204)
T cd03282 104 -D-YADGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAILGN 159 (204)
T ss_pred -H-hcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHhhc
Confidence 1 2356789999997431 111111 22222332 37899999999988876543
No 378
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=93.66 E-value=0.18 Score=59.02 Aligned_cols=136 Identities=13% Similarity=0.131 Sum_probs=74.4
Q ss_pred CCcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHH
Q 001998 178 VSEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKA 257 (984)
Q Consensus 178 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 257 (984)
...++|+...++++.+.+..-.. .-.-|.|+|..|+|||++|+.+.+... ..-...+.|++..-.+ ..+...
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~-----~~~pVlI~Ge~GtGK~~~A~~ih~~s~--r~~~p~v~v~c~~~~~-~~~e~~ 257 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAA-----SDLNVLILGETGVGKELVARAIHAASP--RADKPLVYLNCAALPE-SLAESE 257 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhC-----CCCcEEEECCCCccHHHHHHHHHHhCC--cCCCCeEEEEcccCCh-HHHHHH
Confidence 45799999999999888876442 234578999999999999999987421 1112345555554322 111112
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHHHhCCCceEEEEEcCCCCCcCChhhHHHhhcCCC-----------CCcEEEEEccch
Q 001998 258 IIEELEGSATDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGL-----------RGSKILLTTRKE 326 (984)
Q Consensus 258 i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iiiTtr~~ 326 (984)
+.....+...+... .....+. ....=-|+||+|..-.......+...+..+. ...|||.||...
T Consensus 258 lfG~~~g~~~ga~~--~~~g~~~---~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~ 332 (509)
T PRK05022 258 LFGHVKGAFTGAIS--NRSGKFE---LADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRD 332 (509)
T ss_pred hcCccccccCCCcc--cCCcchh---hcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCCC
Confidence 21111110000000 0000011 1122247899997655555556666664432 245888888653
No 379
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=93.64 E-value=0.59 Score=54.74 Aligned_cols=159 Identities=14% Similarity=0.106 Sum_probs=85.9
Q ss_pred CcccccHHHHHHHHHHHhcC---CC---CCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHH
Q 001998 179 SEVRGRDEEMRTLKSMLLCQ---GS---DQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEF 252 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~---~~---~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 252 (984)
.++.|.+..++.+.+.+... .. ...-...+.+.++|++|.|||.||+++++ ....+|-.+.+-
T Consensus 242 ~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~--~~~~~fi~v~~~--------- 310 (494)
T COG0464 242 DDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVAL--ESRSRFISVKGS--------- 310 (494)
T ss_pred ehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHh--hCCCeEEEeeCH---------
Confidence 35666666666555443321 10 00023456889999999999999999998 334444222111
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCceEEEEEcCCCC------Cc-----CChhhHHHhhcC--CCCCcEE
Q 001998 253 SVAKAIIEELEGSATDLHELNSLLRRIGANIAGQKFFMVLDNLWTD------DY-----RKWEPFRNCLMN--GLRGSKI 319 (984)
Q Consensus 253 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~------~~-----~~~~~l~~~l~~--~~~gs~i 319 (984)
+++...-+ .....+...+....+..+..|++|++..- +. ....++...+.. ...+-.|
T Consensus 311 ----~l~sk~vG-----esek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~v 381 (494)
T COG0464 311 ----ELLSKWVG-----ESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLV 381 (494)
T ss_pred ----HHhccccc-----hHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEE
Confidence 11111111 11122333444455688999999998531 00 112223333322 2233334
Q ss_pred EEEccchHHHhh-c-C--C-CCeEeCCCCChHhHHHHHHHHhc
Q 001998 320 LLTTRKETVARM-M-E--S-TDIVYVQGLSEPECWSLFRRFAF 357 (984)
Q Consensus 320 iiTtr~~~v~~~-~-~--~-~~~~~l~~L~~~~~~~lf~~~~~ 357 (984)
|-||........ + . . ...+.+.+-+.++..++|+.+.-
T Consensus 382 i~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~ 424 (494)
T COG0464 382 IAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLR 424 (494)
T ss_pred EecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhc
Confidence 555554433221 1 1 2 45788899999999999998875
No 380
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=93.63 E-value=0.32 Score=48.94 Aligned_cols=22 Identities=18% Similarity=0.089 Sum_probs=20.2
Q ss_pred EEEEEEecCcchHHHHHHHHhc
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
++++|+|..|.|||||.+.+..
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 7899999999999999988875
No 381
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=93.63 E-value=0.31 Score=51.31 Aligned_cols=112 Identities=18% Similarity=0.086 Sum_probs=59.7
Q ss_pred ceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEE---ecCCCCHHHHHHHHHHHhcCCCC-------C-cccHHH
Q 001998 206 TVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVC---VSDPFDEFSVAKAIIEELEGSAT-------D-LHELNS 274 (984)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~---~s~~~~~~~~~~~i~~~l~~~~~-------~-~~~~~~ 274 (984)
...-++|+|..|.|||||.+.+... + ......+++. +...... .++......-.. + ......
T Consensus 110 ~~~~~~i~g~~g~GKttl~~~l~~~--~-~~~~G~i~~~g~~v~~~d~~----~ei~~~~~~~~q~~~~~r~~v~~~~~k 182 (270)
T TIGR02858 110 RVLNTLIISPPQCGKTTLLRDLARI--L-STGISQLGLRGKKVGIVDER----SEIAGCVNGVPQHDVGIRTDVLDGCPK 182 (270)
T ss_pred CeeEEEEEcCCCCCHHHHHHHHhCc--c-CCCCceEEECCEEeecchhH----HHHHHHhcccccccccccccccccchH
Confidence 3567899999999999999999973 2 2223333331 1111112 233322221100 0 001111
Q ss_pred HHHHHHHHh-CCCceEEEEEcCCCCCcCChhhHHHhhcCCCCCcEEEEEccchHHHh
Q 001998 275 LLRRIGANI-AGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILLTTRKETVAR 330 (984)
Q Consensus 275 ~~~~l~~~l-~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~v~~ 330 (984)
...+...+ ...+=++++|.+-. .+.+..+...+. .|..||+||.+..+..
T Consensus 183 -~~~~~~~i~~~~P~villDE~~~--~e~~~~l~~~~~---~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 183 -AEGMMMLIRSMSPDVIVVDEIGR--EEDVEALLEALH---AGVSIIATAHGRDVED 233 (270)
T ss_pred -HHHHHHHHHhCCCCEEEEeCCCc--HHHHHHHHHHHh---CCCEEEEEechhHHHH
Confidence 11122222 25788999999843 233444444442 4778999999876644
No 382
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=93.61 E-value=0.091 Score=53.98 Aligned_cols=76 Identities=14% Similarity=0.203 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHHhh-hhccccchHHHHHHHHHHhhhhchhhHHHHHH
Q 001998 9 VLEQLISVAAKEATEEVRLVVGVGQQVEKLKRNFRAIQAVLHDA-EHRQVREEGVRLWLDQLKDTSYDMEDVLDEWI 84 (984)
Q Consensus 9 ~~~~l~~~l~~~~~~~~~~~~~v~~~~~~l~~~l~~i~~~l~~a-~~~~~~~~~~~~wl~~lr~~ayd~eD~ld~~~ 84 (984)
.+..+++.|..+.......+.-++.+++-++.+++++|.||+.. +...........++.++-+.||++|+++|.+.
T Consensus 297 yVdFlL~NLkdfq~rysdSlaflKnQiqvIQ~elesLqpFLk~V~ee~~nkh~~~ed~a~~ii~kAyevEYVVDaCi 373 (402)
T PF12061_consen 297 YVDFLLKNLKDFQGRYSDSLAFLKNQIQVIQTELESLQPFLKHVVEEPHNKHDTNEDCATQIIRKAYEVEYVVDACI 373 (402)
T ss_pred HHHHHHhhHHHHhccccchHHHHHHHHHHHHHHHHHhhHHHHHHHhccchhhhhhhhHHHHHHHHHhheeeeeehhh
Confidence 45666777777666555666778999999999999999999987 44344434478899999999999999999984
No 383
>PRK06762 hypothetical protein; Provisional
Probab=93.58 E-value=0.05 Score=53.16 Aligned_cols=23 Identities=30% Similarity=0.432 Sum_probs=20.9
Q ss_pred EEEEEEecCcchHHHHHHHHhcC
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
.+|.|+|+.|+||||+|+.+.+.
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58899999999999999998873
No 384
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=93.57 E-value=0.31 Score=53.94 Aligned_cols=82 Identities=18% Similarity=0.203 Sum_probs=47.6
Q ss_pred ceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCC-----cccHHHHHHHHH
Q 001998 206 TVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAIIEELEGSATD-----LHELNSLLRRIG 280 (984)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~ 280 (984)
.-.++.|.|.+|+|||||+.+++.. ....-..++|++.... ...+ +.-++.++..... ..+++.+.+.+.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~--~a~~g~~VlYvs~EEs--~~qi-~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~ 155 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAAR--LAKRGGKVLYVSGEES--PEQI-KLRADRLGISTENLYLLAETNLEDILASIE 155 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCcC--HHHH-HHHHHHcCCCcccEEEEccCcHHHHHHHHH
Confidence 3568999999999999999988763 3333356778865432 3322 2223344322111 123444444442
Q ss_pred HHhCCCceEEEEEcC
Q 001998 281 ANIAGQKFFMVLDNL 295 (984)
Q Consensus 281 ~~l~~kr~LlVlDdv 295 (984)
..+.-+||+|.+
T Consensus 156 ---~~~~~lVVIDSI 167 (372)
T cd01121 156 ---ELKPDLVIIDSI 167 (372)
T ss_pred ---hcCCcEEEEcch
Confidence 235567888887
No 385
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.56 E-value=0.78 Score=52.73 Aligned_cols=58 Identities=24% Similarity=0.217 Sum_probs=38.9
Q ss_pred CCcccccHHHHHHHHHHHhcCCCC------CCCCceEEEEEEecCcchHHHHHHHHhcCcccccCC
Q 001998 178 VSEVRGRDEEMRTLKSMLLCQGSD------QQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNF 237 (984)
Q Consensus 178 ~~~~~Gr~~~~~~l~~~L~~~~~~------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F 237 (984)
-+++=|.++-+.++.+.+..+-.. -+-...+-|..+|++|.|||++|+.+.+ +-...|
T Consensus 433 W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAn--e~~~nF 496 (693)
T KOG0730|consen 433 WDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALAN--EAGMNF 496 (693)
T ss_pred hhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhh--hhcCCe
Confidence 345666777777777555432110 0113467788999999999999999999 444555
No 386
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=93.56 E-value=0.75 Score=55.31 Aligned_cols=159 Identities=17% Similarity=0.121 Sum_probs=81.7
Q ss_pred CcccccHHHHHHHHHHHhcCCCC-----CCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHH
Q 001998 179 SEVRGRDEEMRTLKSMLLCQGSD-----QQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFS 253 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~-----~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 253 (984)
.++.|.+..++++.+.+...... ....-.+-+.++|.+|.|||++|+.+.+. ....| +.++.+.
T Consensus 152 ~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~--~~~~f---~~is~~~------ 220 (644)
T PRK10733 152 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE--AKVPF---FTISGSD------ 220 (644)
T ss_pred HHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH--cCCCE---EEEehHH------
Confidence 35778777776666544321100 00111234889999999999999999873 33333 2222211
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCceEEEEEcCCCCC----------cCChhhHH-Hhh---cC--CCCCc
Q 001998 254 VAKAIIEELEGSATDLHELNSLLRRIGANIAGQKFFMVLDNLWTDD----------YRKWEPFR-NCL---MN--GLRGS 317 (984)
Q Consensus 254 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~----------~~~~~~l~-~~l---~~--~~~gs 317 (984)
+. ....+. ....+...+.......+.+|++|+++.-. ...+.... ..+ .. ...+.
T Consensus 221 ~~----~~~~g~-----~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~v 291 (644)
T PRK10733 221 FV----EMFVGV-----GASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGI 291 (644)
T ss_pred hH----Hhhhcc-----cHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCe
Confidence 11 111110 11222333333444578899999985420 01122222 222 11 12344
Q ss_pred EEEEEccchHHHhh-c-C---CCCeEeCCCCChHhHHHHHHHHhc
Q 001998 318 KILLTTRKETVARM-M-E---STDIVYVQGLSEPECWSLFRRFAF 357 (984)
Q Consensus 318 ~iiiTtr~~~v~~~-~-~---~~~~~~l~~L~~~~~~~lf~~~~~ 357 (984)
-+|.||...+.... + . -...+.+...+.++-.+++..+..
T Consensus 292 ivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~ 336 (644)
T PRK10733 292 IVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMR 336 (644)
T ss_pred eEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhh
Confidence 55557776553321 1 1 145777888887888888877653
No 387
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.56 E-value=0.57 Score=52.42 Aligned_cols=88 Identities=13% Similarity=0.221 Sum_probs=44.5
Q ss_pred ceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecC-CCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhC
Q 001998 206 TVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSD-PFDEFSVAKAIIEELEGSATDLHELNSLLRRIGANIA 284 (984)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 284 (984)
.-.+++++|..|+||||++.++..........+.+..+.... .....+-+....+.++.+.....+..++...+. .+.
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~-~l~ 268 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLH-ELR 268 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHH-Hhc
Confidence 357999999999999999988775311122223444444322 122333344444444433222223333333232 234
Q ss_pred CCceEEEEEcC
Q 001998 285 GQKFFMVLDNL 295 (984)
Q Consensus 285 ~kr~LlVlDdv 295 (984)
++ -++++|-.
T Consensus 269 ~~-d~VLIDTa 278 (420)
T PRK14721 269 GK-HMVLIDTV 278 (420)
T ss_pred CC-CEEEecCC
Confidence 43 35666655
No 388
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=93.55 E-value=0.28 Score=55.02 Aligned_cols=86 Identities=12% Similarity=0.143 Sum_probs=48.2
Q ss_pred eEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHHHHHhcCC------CCCcccHH-----HH
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAIIEELEGS------ATDLHELN-----SL 275 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~------~~~~~~~~-----~~ 275 (984)
-..++|+|..|+|||||++.+.... .....++++.-....++.++....+...... ..+..... ..
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l~---~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~ 241 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARAD---AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLT 241 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC---CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHH
Confidence 3478999999999999999888632 2233444443334445555544444433111 11111111 11
Q ss_pred HHHHHHHh--CCCceEEEEEcC
Q 001998 276 LRRIGANI--AGQKFFMVLDNL 295 (984)
Q Consensus 276 ~~~l~~~l--~~kr~LlVlDdv 295 (984)
.-.+.+++ +++.+|+++||+
T Consensus 242 a~~iAEyfrd~G~~Vll~~Dsl 263 (450)
T PRK06002 242 ATAIAEYFRDRGENVLLIVDSV 263 (450)
T ss_pred HHHHHHHHHHcCCCEEEeccch
Confidence 12223333 589999999998
No 389
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=93.52 E-value=0.77 Score=47.78 Aligned_cols=52 Identities=10% Similarity=0.211 Sum_probs=31.5
Q ss_pred HHHHhCCCceEEEEEcCCC-CCcCChhhHHHhhcCCCCCcEEEEEccchHHHh
Q 001998 279 IGANIAGQKFFMVLDNLWT-DDYRKWEPFRNCLMNGLRGSKILLTTRKETVAR 330 (984)
Q Consensus 279 l~~~l~~kr~LlVlDdvw~-~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~v~~ 330 (984)
+...+-.++=+++||+..+ -|......+...+..-..|..||++|.+.....
T Consensus 149 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~ 201 (237)
T cd03252 149 IARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVK 201 (237)
T ss_pred HHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHH
Confidence 3444555677999999744 222333344444443334677889988877665
No 390
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=93.51 E-value=0.093 Score=55.24 Aligned_cols=23 Identities=26% Similarity=0.248 Sum_probs=17.9
Q ss_pred EEEEEEecCcchHHHHHHHHhcC
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
..|.|+|.+|.||||+|+.+...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~ 24 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKY 24 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Confidence 46889999999999999998873
No 391
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=93.51 E-value=0.11 Score=51.24 Aligned_cols=22 Identities=36% Similarity=0.543 Sum_probs=19.9
Q ss_pred EEEEEecCcchHHHHHHHHhcC
Q 001998 209 IFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
+|+|.|..|.||||||+.+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~ 22 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQ 22 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998873
No 392
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.50 E-value=0.39 Score=50.45 Aligned_cols=89 Identities=11% Similarity=0.136 Sum_probs=45.9
Q ss_pred eEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCC-CHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhC-
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPF-DEFSVAKAIIEELEGSATDLHELNSLLRRIGANIA- 284 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~- 284 (984)
..+++++|.+|+||||+++.+... ....=..+.+++..... ...+-++...+.++-+.....+...+...+...-.
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~--l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~ 152 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQ--FHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEE 152 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhc
Confidence 368999999999999999888653 22221245556543221 12222222222222221112233444444433212
Q ss_pred CCceEEEEEcCCC
Q 001998 285 GQKFFMVLDNLWT 297 (984)
Q Consensus 285 ~kr~LlVlDdvw~ 297 (984)
.+.=++++|..-.
T Consensus 153 ~~~D~ViIDt~Gr 165 (270)
T PRK06731 153 ARVDYILIDTAGK 165 (270)
T ss_pred CCCCEEEEECCCC
Confidence 2445888898744
No 393
>PRK06217 hypothetical protein; Validated
Probab=93.49 E-value=0.22 Score=49.53 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=20.0
Q ss_pred EEEEEecCcchHHHHHHHHhcC
Q 001998 209 IFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
.|.|.|.+|.||||+|+++...
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999874
No 394
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=93.49 E-value=0.3 Score=49.42 Aligned_cols=61 Identities=15% Similarity=0.203 Sum_probs=35.9
Q ss_pred HHHHHhCCCceEEEEEcCCCC-CcCChh-hHHHhhcCCC-C-CcEEEEEccchHHHhhcCCCCeEeC
Q 001998 278 RIGANIAGQKFFMVLDNLWTD-DYRKWE-PFRNCLMNGL-R-GSKILLTTRKETVARMMESTDIVYV 340 (984)
Q Consensus 278 ~l~~~l~~kr~LlVlDdvw~~-~~~~~~-~l~~~l~~~~-~-gs~iiiTtr~~~v~~~~~~~~~~~l 340 (984)
.+...+..+.-++++|+.-.. |..... .+...+..-. . |.-||++|.+.+.... ...++.+
T Consensus 131 ala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~--~d~i~~l 195 (204)
T cd03240 131 ALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDA--ADHIYRV 195 (204)
T ss_pred HHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhh--CCEEEEE
Confidence 355666778889999997432 222334 4444444322 2 5678888888776653 2344444
No 395
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=93.47 E-value=0.57 Score=54.57 Aligned_cols=47 Identities=15% Similarity=0.204 Sum_probs=36.1
Q ss_pred CcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcC
Q 001998 179 SEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
..++|+...+.++...+..-.. ....+.|+|.+|+|||++|+.+...
T Consensus 138 ~~lig~s~~~~~l~~~~~~~~~-----~~~~vli~Ge~GtGK~~lA~~ih~~ 184 (469)
T PRK10923 138 TDIIGEAPAMQDVFRIIGRLSR-----SSISVLINGESGTGKELVAHALHRH 184 (469)
T ss_pred ccceecCHHHHHHHHHHHHHhc-----cCCeEEEEeCCCCcHHHHHHHHHhc
Confidence 3689998888888777654321 2345779999999999999999874
No 396
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.47 E-value=0.27 Score=58.76 Aligned_cols=88 Identities=13% Similarity=0.151 Sum_probs=50.6
Q ss_pred eEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecC-CCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCC
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSD-PFDEFSVAKAIIEELEGSATDLHELNSLLRRIGANIAG 285 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 285 (984)
.+|+.++|..|+||||.+.++............+..+.... .....+-++...+.++.+.....+.+++...+.+ +.+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~-~~~ 263 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAA-LGD 263 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHH-hcC
Confidence 47999999999999999998887422222223455554332 1224455555555555433323344555544443 344
Q ss_pred CceEEEEEcCC
Q 001998 286 QKFFMVLDNLW 296 (984)
Q Consensus 286 kr~LlVlDdvw 296 (984)
+. +|++|=.-
T Consensus 264 ~D-~VLIDTAG 273 (767)
T PRK14723 264 KH-LVLIDTVG 273 (767)
T ss_pred CC-EEEEeCCC
Confidence 43 67777664
No 397
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=93.44 E-value=0.35 Score=55.92 Aligned_cols=60 Identities=23% Similarity=0.388 Sum_probs=43.0
Q ss_pred CcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEE
Q 001998 179 SEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVC 244 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 244 (984)
.+++--.+-++++..||...-.+ ....+++.+.|++|.||||.++.+++. -.|+.+=|.+
T Consensus 19 ~eLavhkkKv~eV~~wl~~~~~~--~~~~~iLlLtGP~G~GKtttv~~La~e----lg~~v~Ew~n 78 (519)
T PF03215_consen 19 DELAVHKKKVEEVRSWLEEMFSG--SSPKRILLLTGPSGCGKTTTVKVLAKE----LGFEVQEWIN 78 (519)
T ss_pred HHhhccHHHHHHHHHHHHHHhcc--CCCcceEEEECCCCCCHHHHHHHHHHH----hCCeeEEecC
Confidence 45555667777888888653221 234579999999999999999999974 2466677764
No 398
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.43 E-value=0.64 Score=47.49 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=20.9
Q ss_pred EEEEEEecCcchHHHHHHHHhcC
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
.+++|+|..|.|||||++.+...
T Consensus 38 e~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 38 EALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Confidence 47999999999999999999874
No 399
>PRK06547 hypothetical protein; Provisional
Probab=93.42 E-value=0.06 Score=52.59 Aligned_cols=25 Identities=32% Similarity=0.278 Sum_probs=22.4
Q ss_pred ceEEEEEEecCcchHHHHHHHHhcC
Q 001998 206 TVQIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
...+|+|.|..|.||||+|+.+...
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 5779999999999999999999863
No 400
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=93.42 E-value=0.075 Score=48.05 Aligned_cols=27 Identities=33% Similarity=0.464 Sum_probs=18.5
Q ss_pred EEEEecCcchHHHHHHHHhcCcccccCCC
Q 001998 210 FSMVGMGGIGKTTLAQLAYNDNDVINNFE 238 (984)
Q Consensus 210 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~ 238 (984)
|.|.|.+|+||||+|+.+.. .+...|.
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCcee
Confidence 56899999999999999998 4666664
No 401
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=93.35 E-value=0.58 Score=47.27 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=21.2
Q ss_pred eEEEEEEecCcchHHHHHHHHhcC
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
-.+++|+|..|.|||||.+.+..-
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (201)
T cd03231 26 GEALQVTGPNGSGKTTLLRILAGL 49 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999988863
No 402
>PRK03839 putative kinase; Provisional
Probab=93.33 E-value=0.053 Score=53.77 Aligned_cols=22 Identities=36% Similarity=0.665 Sum_probs=20.0
Q ss_pred EEEEEecCcchHHHHHHHHhcC
Q 001998 209 IFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
.|.|+|++|+||||+|+.+++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999884
No 403
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.30 E-value=0.54 Score=49.14 Aligned_cols=125 Identities=13% Similarity=0.048 Sum_probs=62.6
Q ss_pred eEEEEEEecCcchHHHHHHHHhcCccc-ccC--CC--eEEEEEec----CCCCHHHHHH--------------HHHHHhc
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYNDNDV-INN--FE--IRVWVCVS----DPFDEFSVAK--------------AIIEELE 263 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~--F~--~~~wv~~s----~~~~~~~~~~--------------~i~~~l~ 263 (984)
-.+++|+|..|+|||||++.+...... .+. ++ .+.++.-. ...++.+.+. ++++.++
T Consensus 25 Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~ 104 (246)
T cd03237 25 SEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQ 104 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcC
Confidence 358999999999999999999874221 111 11 12222211 1122333222 1222222
Q ss_pred CCC------CCcccHHHHHHHHHHHhCCCceEEEEEcCCCC-CcCChhhHHHhhcCC--CCCcEEEEEccchHHHhh
Q 001998 264 GSA------TDLHELNSLLRRIGANIAGQKFFMVLDNLWTD-DYRKWEPFRNCLMNG--LRGSKILLTTRKETVARM 331 (984)
Q Consensus 264 ~~~------~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~--~~gs~iiiTtr~~~v~~~ 331 (984)
... ...+.-+.-.-.+...|..+.=+++||+--.. |...-..+...+... ..|.-||++|.+...+..
T Consensus 105 l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~ 181 (246)
T cd03237 105 IEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDY 181 (246)
T ss_pred CHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 110 01111122222355666677889999997431 122222333334332 236678888888665543
No 404
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=93.30 E-value=0.3 Score=55.29 Aligned_cols=100 Identities=16% Similarity=0.239 Sum_probs=61.5
Q ss_pred CCcccccHHHHHHHHHHHhcCCCC-----CCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHH
Q 001998 178 VSEVRGRDEEMRTLKSMLLCQGSD-----QQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEF 252 (984)
Q Consensus 178 ~~~~~Gr~~~~~~l~~~L~~~~~~-----~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 252 (984)
-.++=|.++.+.++.+++..-..+ .+-...+=|.++|++|.|||.||+++++. ..-.| +.++.
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAge--l~vPf-----~~isA----- 256 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGE--LGVPF-----LSISA----- 256 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhh--cCCce-----Eeecc-----
Confidence 346778998888877776542110 11234566789999999999999999984 33333 22221
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCceEEEEEcCCC
Q 001998 253 SVAKAIIEELEGSATDLHELNSLLRRIGANIAGQKFFMVLDNLWT 297 (984)
Q Consensus 253 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~ 297 (984)
-+|+....+. ..+.+.+.+.+.-..-++++++|++.-
T Consensus 257 ---peivSGvSGE-----SEkkiRelF~~A~~~aPcivFiDeIDA 293 (802)
T KOG0733|consen 257 ---PEIVSGVSGE-----SEKKIRELFDQAKSNAPCIVFIDEIDA 293 (802)
T ss_pred ---hhhhcccCcc-----cHHHHHHHHHHHhccCCeEEEeecccc
Confidence 1222222221 223344445556678899999999853
No 405
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=93.24 E-value=0.053 Score=53.25 Aligned_cols=24 Identities=38% Similarity=0.481 Sum_probs=21.9
Q ss_pred eEEEEEEecCcchHHHHHHHHhcC
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
..+|+|-||=|+||||||+.+.++
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~ 27 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEH 27 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHH
Confidence 468999999999999999999984
No 406
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=93.23 E-value=0.15 Score=54.84 Aligned_cols=26 Identities=23% Similarity=0.394 Sum_probs=23.6
Q ss_pred CceEEEEEEecCcchHHHHHHHHhcC
Q 001998 205 NTVQIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 205 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
...+.++|+|.+|.|||.+|+.+++.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999984
No 407
>PTZ00494 tuzin-like protein; Provisional
Probab=93.20 E-value=1.7 Score=47.84 Aligned_cols=169 Identities=15% Similarity=0.166 Sum_probs=106.3
Q ss_pred ccccCCcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHH
Q 001998 174 SLIDVSEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFS 253 (984)
Q Consensus 174 ~~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 253 (984)
.......+|.|++|-..+-..|.+-+ ....+++.+.|.-|.||++|.+.....+. -..++|.+... ++
T Consensus 366 a~a~~~~~V~R~~eE~~vRqvL~qld----~aHPRIvV~TG~~GcGKSslcRsAvrkE~-----~paV~VDVRg~---ED 433 (664)
T PTZ00494 366 AAAAEAFEVRREDEEALVRSVLTQMA----PSHPRIVALAGGSGGGRCVPCRRAVRVEG-----VALVHVDVGGT---ED 433 (664)
T ss_pred cccccccccchhhHHHHHHHHHhhcc----CCCCcEEEEecCCCCCchHHHHHHHHHcC-----CCeEEEEecCC---cc
Confidence 34456789999999888888887655 35789999999999999999998776432 24667777654 45
Q ss_pred HHHHHHHHhcCCCCCc--ccHH---HHHHHHHHHhCCCceEEEEEcCCCCC-cCChhhHHHhhcCCCCCcEEEEEccchH
Q 001998 254 VAKAIIEELEGSATDL--HELN---SLLRRIGANIAGQKFFMVLDNLWTDD-YRKWEPFRNCLMNGLRGSKILLTTRKET 327 (984)
Q Consensus 254 ~~~~i~~~l~~~~~~~--~~~~---~~~~~l~~~l~~kr~LlVlDdvw~~~-~~~~~~l~~~l~~~~~gs~iiiTtr~~~ 327 (984)
.++.|++.++.+..+. +-++ +...+-+....++.=+||+-=-+-.+ ...+.+. -.|.....-++|++----+.
T Consensus 434 tLrsVVKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~-vaLacDrRlCHvv~EVplES 512 (664)
T PTZ00494 434 TLRSVVRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEV-VSLVSDCQACHIVLAVPMKA 512 (664)
T ss_pred hHHHHHHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHH-HHHHccchhheeeeechHhh
Confidence 6788888888764332 1122 22333333345666677764321110 1122221 12444556778887655544
Q ss_pred HHhhc---CCCCeEeCCCCChHhHHHHHHHH
Q 001998 328 VARMM---ESTDIVYVQGLSEPECWSLFRRF 355 (984)
Q Consensus 328 v~~~~---~~~~~~~l~~L~~~~~~~lf~~~ 355 (984)
+.-.. .....|.+.+++.++|.++-.+.
T Consensus 513 LT~~n~~LPRLDFy~VPnFSr~QAf~YtqH~ 543 (664)
T PTZ00494 513 LTPLNVSSRRLDFYCIPPFSRRQAFAYAEHT 543 (664)
T ss_pred hchhhccCccceeEecCCcCHHHHHHHHhcc
Confidence 32221 22457889999999998876654
No 408
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=93.17 E-value=0.2 Score=54.25 Aligned_cols=21 Identities=29% Similarity=0.393 Sum_probs=18.7
Q ss_pred EEEEecCcchHHHHHHHHhcC
Q 001998 210 FSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 210 i~I~G~gGiGKTtLa~~v~~~ 230 (984)
+.+.|++|.||||+++.+.+.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~ 22 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSAT 22 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999864
No 409
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=93.09 E-value=0.2 Score=55.21 Aligned_cols=82 Identities=22% Similarity=0.235 Sum_probs=50.8
Q ss_pred CcccccHHHHHHHHHHHhcC------CCCCC-CCceEEEEEEecCcchHHHHHHHHhcCcccccCC---CeEEEEEec-C
Q 001998 179 SEVRGRDEEMRTLKSMLLCQ------GSDQQ-TNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNF---EIRVWVCVS-D 247 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~------~~~~~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~~s-~ 247 (984)
..++|.+..++.+..++... ..+.. ....+-+.++|+.|+||||||+.+... ....| +..-|.... .
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~--l~~~fi~vD~t~f~e~Gyv 92 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKL--ANAPFIKVEATKFTEVGYV 92 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHH--hCChheeecchhhccCCcc
Confidence 46889999999998887541 00000 111356899999999999999999873 33333 222222211 2
Q ss_pred CCCHHHHHHHHHHHh
Q 001998 248 PFDEFSVAKAIIEEL 262 (984)
Q Consensus 248 ~~~~~~~~~~i~~~l 262 (984)
..+...+.+++....
T Consensus 93 G~d~e~~ir~L~~~A 107 (443)
T PRK05201 93 GRDVESIIRDLVEIA 107 (443)
T ss_pred cCCHHHHHHHHHHHH
Confidence 236667777766655
No 410
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=93.07 E-value=0.21 Score=53.99 Aligned_cols=82 Identities=17% Similarity=0.205 Sum_probs=51.6
Q ss_pred eEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCC-----cccHHHHHHHHHH
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAIIEELEGSATD-----LHELNSLLRRIGA 281 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~~ 281 (984)
-.++.|-|-+|||||||.-++..+ ....- .+++|+-.+ +...+ +--++.++....+ ..+++.+.+.+.+
T Consensus 93 Gs~iLIgGdPGIGKSTLLLQva~~--lA~~~-~vLYVsGEE--S~~Qi-klRA~RL~~~~~~l~l~aEt~~e~I~~~l~~ 166 (456)
T COG1066 93 GSVILIGGDPGIGKSTLLLQVAAR--LAKRG-KVLYVSGEE--SLQQI-KLRADRLGLPTNNLYLLAETNLEDIIAELEQ 166 (456)
T ss_pred ccEEEEccCCCCCHHHHHHHHHHH--HHhcC-cEEEEeCCc--CHHHH-HHHHHHhCCCccceEEehhcCHHHHHHHHHh
Confidence 468999999999999999998874 43333 677775433 33222 2223444432222 2455555555543
Q ss_pred HhCCCceEEEEEcCCC
Q 001998 282 NIAGQKFFMVLDNLWT 297 (984)
Q Consensus 282 ~l~~kr~LlVlDdvw~ 297 (984)
.++-++|+|-+.+
T Consensus 167 ---~~p~lvVIDSIQT 179 (456)
T COG1066 167 ---EKPDLVVIDSIQT 179 (456)
T ss_pred ---cCCCEEEEeccce
Confidence 6888999999854
No 411
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=93.06 E-value=1.7 Score=44.05 Aligned_cols=161 Identities=15% Similarity=0.143 Sum_probs=87.0
Q ss_pred cCCcccccHHHHHH---HHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHH
Q 001998 177 DVSEVRGRDEEMRT---LKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFS 253 (984)
Q Consensus 177 ~~~~~~Gr~~~~~~---l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 253 (984)
.-++++|.++.+.+ |++.|..+.. -+.=..+-|..+|.+|.|||.+|+++.+.. +-.| +-| +
T Consensus 119 t~ddViGqEeAK~kcrli~~yLenPe~-Fg~WAPknVLFyGppGTGKTm~Akalane~--kvp~---l~v---------k 183 (368)
T COG1223 119 TLDDVIGQEEAKRKCRLIMEYLENPER-FGDWAPKNVLFYGPPGTGKTMMAKALANEA--KVPL---LLV---------K 183 (368)
T ss_pred cHhhhhchHHHHHHHHHHHHHhhChHH-hcccCcceeEEECCCCccHHHHHHHHhccc--CCce---EEe---------c
Confidence 34578999887764 4555654321 001135778899999999999999999943 2232 111 1
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCceEEEEEcCCCCC--------cCChhhHHHhhc------CCCCCcEE
Q 001998 254 VAKAIIEELEGSATDLHELNSLLRRIGANIAGQKFFMVLDNLWTDD--------YRKWEPFRNCLM------NGLRGSKI 319 (984)
Q Consensus 254 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~--------~~~~~~l~~~l~------~~~~gs~i 319 (984)
...-|-+..+. . ..++.+...+.-+.-++.+++|.+.... ..+...+..+|. ..+.|-.-
T Consensus 184 at~liGehVGd---g---ar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvt 257 (368)
T COG1223 184 ATELIGEHVGD---G---ARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVT 257 (368)
T ss_pred hHHHHHHHhhh---H---HHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEE
Confidence 11111111110 1 1122222222334678999999874210 012222222221 12456667
Q ss_pred EEEccchHHHhh-cCC--CCeEeCCCCChHhHHHHHHHHhcC
Q 001998 320 LLTTRKETVARM-MES--TDIVYVQGLSEPECWSLFRRFAFS 358 (984)
Q Consensus 320 iiTtr~~~v~~~-~~~--~~~~~l~~L~~~~~~~lf~~~~~~ 358 (984)
|-.|.+.+.... +.. ..-++...-+++|-..++..++..
T Consensus 258 IaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~ 299 (368)
T COG1223 258 IAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKK 299 (368)
T ss_pred EeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHh
Confidence 777776654432 111 345666667788888888887743
No 412
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.06 E-value=0.63 Score=49.64 Aligned_cols=23 Identities=26% Similarity=0.278 Sum_probs=21.0
Q ss_pred EEEEEEecCcchHHHHHHHHhcC
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
.+++|+|..|.|||||++.+..-
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl 54 (274)
T PRK13647 32 SKTALLGPNGAGKSTLLLHLNGI 54 (274)
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 58999999999999999999863
No 413
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=93.05 E-value=0.14 Score=50.32 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=19.8
Q ss_pred EEEEEecCcchHHHHHHHHhcC
Q 001998 209 IFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
.|.|.|.+|+||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3779999999999999999884
No 414
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=93.01 E-value=0.19 Score=56.65 Aligned_cols=87 Identities=14% Similarity=0.096 Sum_probs=54.7
Q ss_pred EEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCC-CHHHHHHHHHHHhcCC-------CCCcccHH-----H
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPF-DEFSVAKAIIEELEGS-------ATDLHELN-----S 274 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~-----~ 274 (984)
..++|.|..|+|||||+.++.+... +.+-+.++++-+.+.. .+.++..++...-... ..+..... .
T Consensus 144 QR~gIfa~~G~GKt~Ll~~~~~~~~-~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~~ 222 (461)
T PRK12597 144 GKTGLFGGAGVGKTVLMMELIFNIS-KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVVL 222 (461)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHH-hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHHH
Confidence 4689999999999999988887432 2356788888776554 4556666665432110 11111111 1
Q ss_pred HHHHHHHHh---CCCceEEEEEcC
Q 001998 275 LLRRIGANI---AGQKFFMVLDNL 295 (984)
Q Consensus 275 ~~~~l~~~l---~~kr~LlVlDdv 295 (984)
....+.+++ +++++|+++||+
T Consensus 223 ~a~tiAEyfrd~~G~~VLl~~Dsl 246 (461)
T PRK12597 223 TGLTIAEYLRDEEKEDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHHhcCCceEEEeccc
Confidence 223344554 489999999999
No 415
>PRK00625 shikimate kinase; Provisional
Probab=92.99 E-value=0.062 Score=52.52 Aligned_cols=22 Identities=18% Similarity=0.280 Sum_probs=19.5
Q ss_pred EEEEEecCcchHHHHHHHHhcC
Q 001998 209 IFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
.|.++||.|+||||+++.+.+.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~ 23 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKF 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999873
No 416
>PRK04040 adenylate kinase; Provisional
Probab=92.98 E-value=0.073 Score=52.90 Aligned_cols=22 Identities=32% Similarity=0.590 Sum_probs=20.5
Q ss_pred EEEEEEecCcchHHHHHHHHhc
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
.+|+|+|++|+||||+++.+..
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~ 24 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALE 24 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 5899999999999999999887
No 417
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=92.96 E-value=0.57 Score=49.19 Aligned_cols=24 Identities=29% Similarity=0.534 Sum_probs=21.4
Q ss_pred eEEEEEEecCcchHHHHHHHHhcC
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
-.+++|+|..|.|||||++.++.-
T Consensus 30 Ge~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 30 GKILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 357999999999999999999874
No 418
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=92.96 E-value=0.72 Score=48.43 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=21.5
Q ss_pred eEEEEEEecCcchHHHHHHHHhcC
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
-.+++|+|..|.|||||++.+..-
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (248)
T PRK09580 27 GEVHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCC
Confidence 348999999999999999999875
No 419
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=92.95 E-value=0.13 Score=47.40 Aligned_cols=40 Identities=23% Similarity=0.166 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcC
Q 001998 186 EEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 186 ~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
++.+++-+.|...- ..-.++.+.|.-|.||||+++.+.+.
T Consensus 6 ~~t~~l~~~l~~~l-----~~~~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 6 KAMDKFGKAFAKPL-----DFGTVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred HHHHHHHHHHHHhC-----CCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 44555555554321 12358999999999999999999874
No 420
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.93 E-value=0.41 Score=47.99 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=21.0
Q ss_pred eEEEEEEecCcchHHHHHHHHhc
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
-.+++|+|..|.|||||++.+..
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 33 GTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999986
No 421
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=92.91 E-value=0.049 Score=48.56 Aligned_cols=21 Identities=43% Similarity=0.529 Sum_probs=18.6
Q ss_pred EEEEecCcchHHHHHHHHhcC
Q 001998 210 FSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 210 i~I~G~gGiGKTtLa~~v~~~ 230 (984)
|.|+|.+|+|||+||+.++.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999998874
No 422
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=92.89 E-value=1.1 Score=45.31 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=21.4
Q ss_pred eEEEEEEecCcchHHHHHHHHhcC
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
-.+++|+|..|.|||||++.+..-
T Consensus 31 G~~~~i~G~nG~GKSTLl~~i~G~ 54 (204)
T cd03250 31 GELVAIVGPVGSGKSSLLSALLGE 54 (204)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCc
Confidence 358999999999999999999874
No 423
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=92.84 E-value=0.38 Score=53.87 Aligned_cols=85 Identities=18% Similarity=0.222 Sum_probs=47.7
Q ss_pred eEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEec-CCCCHHHHHHHHHHHhcCC-------CCCcccHH-----
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVS-DPFDEFSVAKAIIEELEGS-------ATDLHELN----- 273 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s-~~~~~~~~~~~i~~~l~~~-------~~~~~~~~----- 273 (984)
-..++|+|..|+|||||++.+.+..+ . +..+.+.+. +.-.+.++..+.+..-... ..+.....
T Consensus 140 Gq~i~I~G~sG~GKTtLl~~I~~~~~---~-~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~ 215 (418)
T TIGR03498 140 GQRLGIFAGSGVGKSTLLSMLARNTD---A-DVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAA 215 (418)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCC---C-CEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHH
Confidence 35789999999999999999887422 2 222333333 3344555555544432111 11111111
Q ss_pred HHHHHHHHHh--CCCceEEEEEcC
Q 001998 274 SLLRRIGANI--AGQKFFMVLDNL 295 (984)
Q Consensus 274 ~~~~~l~~~l--~~kr~LlVlDdv 295 (984)
...-.+.+++ +++++|+++||+
T Consensus 216 ~~a~~iAEyfrd~G~~Vll~~Dsl 239 (418)
T TIGR03498 216 YTATAIAEYFRDQGKDVLLLMDSV 239 (418)
T ss_pred HHHHHHHHHHHHcCCCEEEeccch
Confidence 1122233444 589999999998
No 424
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=92.83 E-value=2.4 Score=44.28 Aligned_cols=98 Identities=17% Similarity=0.232 Sum_probs=65.9
Q ss_pred EEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCc
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAIIEELEGSATDLHELNSLLRRIGANIAGQK 287 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 287 (984)
+.+.|+|+.|+|||+-++.+++.. .....+..+..+....+...+.......... ........+...+++..
T Consensus 95 ~l~~vyg~~g~gKt~a~~~y~~s~------p~~~l~~~~p~~~a~~~i~~i~~~~~~~~~~--~~~d~~~~~~~~l~~~~ 166 (297)
T COG2842 95 SLVVVYGYAGLGKTQAAKNYAPSN------PNALLIEADPSYTALVLILIICAAAFGATDG--TINDLTERLMIRLRDTV 166 (297)
T ss_pred ceEEEeccccchhHHHHHhhcccC------ccceeecCChhhHHHHHHHHHHHHHhcccch--hHHHHHHHHHHHHccCc
Confidence 378899999999999999998842 2233355667777777777666665543322 23344455556668888
Q ss_pred eEEEEEcCCCCCcCChhhHHHhhcCC
Q 001998 288 FFMVLDNLWTDDYRKWEPFRNCLMNG 313 (984)
Q Consensus 288 ~LlVlDdvw~~~~~~~~~l~~~l~~~ 313 (984)
-+|+.|+...-..+..+.++......
T Consensus 167 ~~iivDEA~~L~~~ale~lr~i~d~~ 192 (297)
T COG2842 167 RLIIVDEADRLPYRALEELRRIHDKT 192 (297)
T ss_pred ceeeeehhhccChHHHHHHHHHHHhh
Confidence 89999998766556666666544333
No 425
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=92.81 E-value=0.074 Score=53.17 Aligned_cols=24 Identities=29% Similarity=0.344 Sum_probs=21.6
Q ss_pred ceEEEEEEecCcchHHHHHHHHhc
Q 001998 206 TVQIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
...+|.|+|.+|+||||+|+.+..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999885
No 426
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=92.79 E-value=0.011 Score=69.23 Aligned_cols=170 Identities=22% Similarity=0.237 Sum_probs=91.8
Q ss_pred ccCCCCCCeEEEEEcCCcccccCcCchhhccHHHHhhcCCCCCCCCeEEEeec-CCCCCCC----chhhcCCCCcEEEEe
Q 001998 741 LEKKKNIVGLELRFDKEEAATEGINEENEINHQAISEALRPPPDLEALEIMHY-KGQTAFP----SWIVSLNKLKKLKLS 815 (984)
Q Consensus 741 l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~-~~~~~lp----~~l~~l~~L~~L~L~ 815 (984)
...+++|+.|.+..+..... ..+.......++|++|+++++ ......+ .....+++|+.|+++
T Consensus 184 ~~~~~~L~~l~l~~~~~~~~------------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~ 251 (482)
T KOG1947|consen 184 LSSCPLLKRLSLSGCSKITD------------DSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLS 251 (482)
T ss_pred HhhCchhhHhhhcccccCCh------------hhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchh
Confidence 33477888888776543211 113444556778888888773 2222122 112256888888888
Q ss_pred CcCCCCc--CCCCC-CCCCcceeeeccccCceEecceecCccCCCCCCCCCCccCcccccccccccccCCCCcccccCCC
Q 001998 816 SCCKCEI--MPPLG-ALPSLEILQIQRMESVKRVGVEFLGIESFNDYAPSSSLSLTAFPKLKELTLFHLDGCEEWDFGKE 892 (984)
Q Consensus 816 ~~~~~~~--l~~l~-~Lp~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~ 892 (984)
.|..... +..+. .+|+|+.|.+.+|..++..+.... ...+|+|++|.+..+..+.+......
T Consensus 252 ~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i---------------~~~~~~L~~L~l~~c~~~~d~~l~~~ 316 (482)
T KOG1947|consen 252 GCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSI---------------AERCPSLRELDLSGCHGLTDSGLEAL 316 (482)
T ss_pred hhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHH---------------HHhcCcccEEeeecCccchHHHHHHH
Confidence 8864332 22222 378888888777765333222111 24677888888887766533322221
Q ss_pred CcccCCcccEEeeecCc---CCCCCCc--CCCCC-CCcCeEEeccCcchHHh
Q 001998 893 DVIIMPQLCYLDIRFCR---KLKSLPD--QLLQS-STLEKLRIIRAPILRER 938 (984)
Q Consensus 893 ~~~~l~~L~~L~l~~c~---~l~~lp~--~~~~l-~~L~~L~i~~c~~l~~~ 938 (984)
...+|+|+.|.+..++ .++.+-- ..... ..+..+.+.+||.+.+.
T Consensus 317 -~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~ 367 (482)
T KOG1947|consen 317 -LKNCPNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDL 367 (482)
T ss_pred -HHhCcchhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchh
Confidence 2235665555544443 3333211 11112 25777777777776543
No 427
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=92.79 E-value=0.086 Score=64.19 Aligned_cols=23 Identities=17% Similarity=0.137 Sum_probs=20.6
Q ss_pred eEEEEEEecCcchHHHHHHHHhc
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
.+++.|+|+.|.||||+.+.+..
T Consensus 322 ~~~liItGpNg~GKSTlLK~i~~ 344 (771)
T TIGR01069 322 KRVLAITGPNTGGKTVTLKTLGL 344 (771)
T ss_pred ceEEEEECCCCCCchHHHHHHHH
Confidence 47899999999999999988865
No 428
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=92.78 E-value=0.77 Score=49.69 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=21.4
Q ss_pred eEEEEEEecCcchHHHHHHHHhcC
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
-.+++|+|..|.|||||.+.+...
T Consensus 28 Gei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 28 GRIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999874
No 429
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=92.76 E-value=0.42 Score=53.35 Aligned_cols=84 Identities=18% Similarity=0.229 Sum_probs=50.8
Q ss_pred EEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCC-HHHHHHHHHHHhcCC-------CCCcccHH-----H
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFD-EFSVAKAIIEELEGS-------ATDLHELN-----S 274 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~-~~~~~~~i~~~l~~~-------~~~~~~~~-----~ 274 (984)
..++|+|..|+|||||++.+.+.. ..+.++.+-+.+... +.++..+++..-... ..+..... .
T Consensus 163 qrigI~G~sG~GKSTLL~~I~~~~----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~ 238 (444)
T PRK08972 163 QRMGLFAGSGVGKSVLLGMMTRGT----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGCE 238 (444)
T ss_pred CEEEEECCCCCChhHHHHHhccCC----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHHH
Confidence 578999999999999999998731 225666676765543 455666654431111 11111111 1
Q ss_pred HHHHHHHHh--CCCceEEEEEcC
Q 001998 275 LLRRIGANI--AGQKFFMVLDNL 295 (984)
Q Consensus 275 ~~~~l~~~l--~~kr~LlVlDdv 295 (984)
..-.+.+++ +++++|+++||+
T Consensus 239 ~A~tiAEyfrd~G~~VLl~~Dsl 261 (444)
T PRK08972 239 TATTIAEYFRDQGLNVLLLMDSL 261 (444)
T ss_pred HHHHHHHHHHHcCCCEEEEEcCh
Confidence 122233333 689999999998
No 430
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=92.76 E-value=0.27 Score=48.96 Aligned_cols=44 Identities=20% Similarity=0.176 Sum_probs=29.5
Q ss_pred EEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHH
Q 001998 210 FSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKA 257 (984)
Q Consensus 210 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 257 (984)
+.|.|.+|+|||+||.++... ....=..++|++... +...+.+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~--~~~~g~~v~~~s~e~--~~~~~~~~ 45 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYA--GLARGEPGLYVTLEE--SPEELIEN 45 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHH--HHHCCCcEEEEECCC--CHHHHHHH
Confidence 678999999999999887653 212234577886543 44554444
No 431
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=92.75 E-value=0.14 Score=48.12 Aligned_cols=39 Identities=23% Similarity=0.275 Sum_probs=27.5
Q ss_pred EEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecC
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSD 247 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~ 247 (984)
++|.|+|..|+|||||++.+.+. -.+..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~-l~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINE-LKRRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH-HHHTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHH-HhHcCCceEEEEEccC
Confidence 47999999999999999999984 2235566666666554
No 432
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=92.75 E-value=0.23 Score=48.28 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=19.3
Q ss_pred EEEEEEecCcchHHHHHHHHhc
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
..|.+.|.+|+||||+|+.+..
T Consensus 2 pLiIlTGyPgsGKTtfakeLak 23 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAK 23 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHH
Confidence 3577899999999999998887
No 433
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=92.74 E-value=0.13 Score=55.09 Aligned_cols=51 Identities=24% Similarity=0.329 Sum_probs=42.6
Q ss_pred CCcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhc
Q 001998 178 VSEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 178 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
..+|+|.++.++++++.+...+.+ .+..-+|+.++|+.|.||||||+.+-+
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g-~~~~krIl~L~GPvg~GKSsl~~~Lk~ 110 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQG-LEERKRILLLLGPVGGGKSSLAELLKR 110 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhc-cCccceEEEEECCCCCCHHHHHHHHHH
Confidence 458999999999999988765432 245678999999999999999998876
No 434
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.73 E-value=0.35 Score=55.04 Aligned_cols=88 Identities=11% Similarity=0.147 Sum_probs=45.0
Q ss_pred eEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecC-CCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCC
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSD-PFDEFSVAKAIIEELEGSATDLHELNSLLRRIGANIAG 285 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 285 (984)
.+|++++|..|+||||++.+++.....+..-..+..|.... .....+-++...+..+.......+..+....+ ..+.+
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL-~~L~d 334 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLAL-SELRN 334 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHH-HhccC
Confidence 47999999999999999999887422222222345554332 12333334444444433221111212222222 23344
Q ss_pred CceEEEEEcCC
Q 001998 286 QKFFMVLDNLW 296 (984)
Q Consensus 286 kr~LlVlDdvw 296 (984)
+ ..+++|-.-
T Consensus 335 ~-d~VLIDTaG 344 (484)
T PRK06995 335 K-HIVLIDTIG 344 (484)
T ss_pred C-CeEEeCCCC
Confidence 4 466777753
No 435
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=92.71 E-value=1 Score=51.75 Aligned_cols=23 Identities=35% Similarity=0.645 Sum_probs=21.1
Q ss_pred EEEEEEecCcchHHHHHHHHhcC
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
.+++|+|..|.|||||++.+..-
T Consensus 51 EivgIiGpNGSGKSTLLkiLaGL 73 (549)
T PRK13545 51 EIVGIIGLNGSGKSTLSNLIAGV 73 (549)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Confidence 48999999999999999999874
No 436
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=92.65 E-value=0.41 Score=49.54 Aligned_cols=40 Identities=15% Similarity=0.168 Sum_probs=29.1
Q ss_pred ceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecC
Q 001998 206 TVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSD 247 (984)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~ 247 (984)
.-.++.|.|.+|.||||+|.++... ....-..++|++...
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~--~~~~g~~~~~is~e~ 58 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYK--GLRDGDPVIYVTTEE 58 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHH--HHhcCCeEEEEEccC
Confidence 4578999999999999999876542 112345678887643
No 437
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=92.65 E-value=0.45 Score=53.35 Aligned_cols=85 Identities=14% Similarity=0.177 Sum_probs=50.6
Q ss_pred eEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCC-CHHHHHHHHHHHhcCC-------CCCcccHH-----
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPF-DEFSVAKAIIEELEGS-------ATDLHELN----- 273 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~----- 273 (984)
-..++|+|..|+|||||++.+++.. ..+..+++-+.+.. .+.++..+.+..-... ..+.....
T Consensus 158 Gqri~I~G~sG~GKTtLL~~I~~~~----~~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a~ 233 (442)
T PRK08927 158 GQRMGIFAGSGVGKSVLLSMLARNA----DADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQAA 233 (442)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcc----CCCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHHH
Confidence 3578999999999999999998742 22455666666554 3445555554432111 11111111
Q ss_pred HHHHHHHHHh--CCCceEEEEEcC
Q 001998 274 SLLRRIGANI--AGQKFFMVLDNL 295 (984)
Q Consensus 274 ~~~~~l~~~l--~~kr~LlVlDdv 295 (984)
...-.+.+++ +++.+|+++||+
T Consensus 234 ~~a~tiAEyfrd~G~~Vll~~Dsl 257 (442)
T PRK08927 234 YLTLAIAEYFRDQGKDVLCLMDSV 257 (442)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeCc
Confidence 1122233333 589999999998
No 438
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=92.63 E-value=0.37 Score=54.23 Aligned_cols=87 Identities=17% Similarity=0.142 Sum_probs=52.8
Q ss_pred EEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCC-CHHHHHHHHHHHhcCC-------CCCcccHH-----H
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPF-DEFSVAKAIIEELEGS-------ATDLHELN-----S 274 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~-----~ 274 (984)
..++|.|..|+|||||+.++....... +=+.++++-+.+.. .+.++..++...-... ..+..... .
T Consensus 145 QR~gIfa~~GvGKt~Ll~~i~~~~~~~-~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~~ 223 (463)
T PRK09280 145 GKIGLFGGAGVGKTVLIQELINNIAKE-HGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVAL 223 (463)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHhc-CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHH
Confidence 468999999999999998876532211 12457777776544 4566666666532111 11111111 1
Q ss_pred HHHHHHHHh---CCCceEEEEEcC
Q 001998 275 LLRRIGANI---AGQKFFMVLDNL 295 (984)
Q Consensus 275 ~~~~l~~~l---~~kr~LlVlDdv 295 (984)
..-.+.+++ +++++||++||+
T Consensus 224 ~a~tiAEyfrd~~G~~VLll~Dsl 247 (463)
T PRK09280 224 TGLTMAEYFRDVEGQDVLLFIDNI 247 (463)
T ss_pred HHHHHHHHHHHhcCCceEEEecch
Confidence 223344555 689999999998
No 439
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=92.63 E-value=1 Score=46.31 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=21.4
Q ss_pred eEEEEEEecCcchHHHHHHHHhcC
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
-.+++|+|..|.|||||++.+..-
T Consensus 6 Ge~~~l~G~nGsGKSTLl~~l~G~ 29 (223)
T TIGR03771 6 GELLGLLGPNGAGKTTLLRAILGL 29 (223)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999874
No 440
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=92.62 E-value=0.47 Score=47.58 Aligned_cols=40 Identities=25% Similarity=0.269 Sum_probs=26.0
Q ss_pred EEEEEecCcchHHHHHHHHhcCcccccCC--------CeEEEEEecCC
Q 001998 209 IFSMVGMGGIGKTTLAQLAYNDNDVINNF--------EIRVWVCVSDP 248 (984)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--------~~~~wv~~s~~ 248 (984)
+..|+|.+|+||||++..+....-....| ..++|++....
T Consensus 34 l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 34 LTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp EEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 78899999999999998776642222222 35778876655
No 441
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=92.56 E-value=0.92 Score=54.60 Aligned_cols=53 Identities=13% Similarity=0.146 Sum_probs=32.4
Q ss_pred HHHHHhCCCceEEEEEcCCCC-CcCChhhHHHhhcC-CCCCcEEEEEccchHHHh
Q 001998 278 RIGANIAGQKFFMVLDNLWTD-DYRKWEPFRNCLMN-GLRGSKILLTTRKETVAR 330 (984)
Q Consensus 278 ~l~~~l~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~-~~~gs~iiiTtr~~~v~~ 330 (984)
.+.+.+-.++=+++||..-+. |.+.=..+...+.. ....+.|+||=|...+..
T Consensus 619 alARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~ 673 (709)
T COG2274 619 ALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRS 673 (709)
T ss_pred HHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhh
Confidence 355777888899999998442 22222235555544 334667888888765543
No 442
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=92.53 E-value=0.7 Score=48.28 Aligned_cols=55 Identities=18% Similarity=0.175 Sum_probs=36.5
Q ss_pred HHHHHhCCCceEEEEEcCCC-CCcCChhhHHHhhcC--CCCCcEEEEEccchHHHhhc
Q 001998 278 RIGANIAGQKFFMVLDNLWT-DDYRKWEPFRNCLMN--GLRGSKILLTTRKETVARMM 332 (984)
Q Consensus 278 ~l~~~l~~kr~LlVlDdvw~-~~~~~~~~l~~~l~~--~~~gs~iiiTtr~~~v~~~~ 332 (984)
.+.+.|...+-++..|..-+ -|+..-..+...|.. ...|--|++.|...+|-+.+
T Consensus 151 aIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~i 208 (339)
T COG1135 151 AIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRI 208 (339)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHH
Confidence 45677777888999999854 233444456665554 34677888888887766543
No 443
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=92.52 E-value=0.27 Score=54.18 Aligned_cols=101 Identities=17% Similarity=0.184 Sum_probs=57.1
Q ss_pred ceEEEEEEecCcchHHHHHHHHhcCccc----ccCCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHH
Q 001998 206 TVQIFSMVGMGGIGKTTLAQLAYNDNDV----INNFEIRVWVCVSDPFDEFSVAKAIIEELEGSATDLHELNSLLRRIGA 281 (984)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~----~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~ 281 (984)
..+=+.|+|..|.|||.|.-.+|+...+ +-|| .+++.++.+.+..-......+..+ .+
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HF--------------h~Fm~~vh~~l~~~~~~~~~l~~v----a~ 122 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHF--------------HEFMLDVHSRLHQLRGQDDPLPQV----AD 122 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCccccccccc--------------cHHHHHHHHHHHHHhCCCccHHHH----HH
Confidence 4677999999999999999999986433 2233 234444444443221122223333 34
Q ss_pred HhCCCceEEEEEcCCCCCcCChhhHHHhhcC-CCCCcEEEEEcc
Q 001998 282 NIAGQKFFMVLDNLWTDDYRKWEPFRNCLMN-GLRGSKILLTTR 324 (984)
Q Consensus 282 ~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~-~~~gs~iiiTtr 324 (984)
.+.++..||.||...-.|..+--.+...|.. ...|..+|.||.
T Consensus 123 ~l~~~~~lLcfDEF~V~DiaDAmil~rLf~~l~~~gvvlVaTSN 166 (362)
T PF03969_consen 123 ELAKESRLLCFDEFQVTDIADAMILKRLFEALFKRGVVLVATSN 166 (362)
T ss_pred HHHhcCCEEEEeeeeccchhHHHHHHHHHHHHHHCCCEEEecCC
Confidence 4466677999999855444332223333332 245654554444
No 444
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=92.51 E-value=0.22 Score=54.84 Aligned_cols=112 Identities=13% Similarity=0.140 Sum_probs=59.4
Q ss_pred eEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCC
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAIIEELEGSATDLHELNSLLRRIGANIAGQ 286 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 286 (984)
...+.|.|..|.||||+.+.+.+. +..+...+++. +.++... ........+.....+ .+.......++..|+..
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~--i~~~~~~~i~t-iEdp~E~--~~~~~~~~i~q~evg-~~~~~~~~~l~~~lr~~ 195 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDY--INKNAAGHIIT-IEDPIEY--VHRNKRSLINQREVG-LDTLSFANALRAALRED 195 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh--hCcCCCCEEEE-EcCChhh--hccCccceEEccccC-CCCcCHHHHHHHhhccC
Confidence 357999999999999999988863 43444455554 2222111 000000000000111 11123455567778888
Q ss_pred ceEEEEEcCCCCCcCChhhHHHhhcCCCCCcEEEEEccchHHH
Q 001998 287 KFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILLTTRKETVA 329 (984)
Q Consensus 287 r~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~v~ 329 (984)
+=.|++|.+-+ .+.+..... ....|-.|+.|....++.
T Consensus 196 pd~i~vgEird--~~~~~~~l~---aa~tGh~v~~T~Ha~~~~ 233 (343)
T TIGR01420 196 PDVILIGEMRD--LETVELALT---AAETGHLVFGTLHTNSAA 233 (343)
T ss_pred CCEEEEeCCCC--HHHHHHHHH---HHHcCCcEEEEEcCCCHH
Confidence 88999999943 334433222 223354566666554443
No 445
>PRK08760 replicative DNA helicase; Provisional
Probab=92.51 E-value=4.2 Score=46.93 Aligned_cols=54 Identities=15% Similarity=0.066 Sum_probs=35.7
Q ss_pred ceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHHHHHh
Q 001998 206 TVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAIIEEL 262 (984)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l 262 (984)
.-.++.|.|.+|+||||+|..+....-.+... .++++ |-+-+..++...++...
T Consensus 228 ~G~LivIaarPg~GKTafal~iA~~~a~~~g~-~V~~f--SlEMs~~ql~~Rl~a~~ 281 (476)
T PRK08760 228 PTDLIILAARPAMGKTTFALNIAEYAAIKSKK-GVAVF--SMEMSASQLAMRLISSN 281 (476)
T ss_pred CCceEEEEeCCCCChhHHHHHHHHHHHHhcCC-ceEEE--eccCCHHHHHHHHHHhh
Confidence 34578899999999999998887642222233 34444 45556667777776554
No 446
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=92.49 E-value=0.6 Score=50.36 Aligned_cols=84 Identities=17% Similarity=0.215 Sum_probs=48.1
Q ss_pred EEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEec-CCCCHHHHHHHHHHHhcCC-------CCCcccHH-----H
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVS-DPFDEFSVAKAIIEELEGS-------ATDLHELN-----S 274 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s-~~~~~~~~~~~i~~~l~~~-------~~~~~~~~-----~ 274 (984)
..++|+|..|.|||||.+.+.+... -+..+...+. ...++.++.......-... ..+..... .
T Consensus 70 qri~I~G~sG~GKTtLl~~Ia~~~~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~~ 145 (326)
T cd01136 70 QRLGIFAGSGVGKSTLLGMIARGTT----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAAY 145 (326)
T ss_pred cEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHHH
Confidence 4689999999999999999987422 2334444444 3345555555555432111 11111111 1
Q ss_pred HHHHHHHHh--CCCceEEEEEcC
Q 001998 275 LLRRIGANI--AGQKFFMVLDNL 295 (984)
Q Consensus 275 ~~~~l~~~l--~~kr~LlVlDdv 295 (984)
..-.+.+++ ++|.+|+++||+
T Consensus 146 ~a~~~AEyfr~~g~~Vll~~Dsl 168 (326)
T cd01136 146 TATAIAEYFRDQGKDVLLLMDSL 168 (326)
T ss_pred HHHHHHHHHHHcCCCeEEEeccc
Confidence 112222333 589999999998
No 447
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=92.47 E-value=0.07 Score=53.86 Aligned_cols=21 Identities=38% Similarity=0.534 Sum_probs=19.4
Q ss_pred EEEEEecCcchHHHHHHHHhc
Q 001998 209 IFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~ 229 (984)
+|+|.|..|+||||||+.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999876
No 448
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=92.47 E-value=0.071 Score=52.63 Aligned_cols=22 Identities=41% Similarity=0.486 Sum_probs=19.9
Q ss_pred EEEEEecCcchHHHHHHHHhcC
Q 001998 209 IFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
+|+|.|.+|.||||+|+.+...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999873
No 449
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=92.46 E-value=0.085 Score=52.25 Aligned_cols=23 Identities=35% Similarity=0.505 Sum_probs=20.4
Q ss_pred EEEEEEecCcchHHHHHHHHhcC
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
.++.|+|+.|+|||||++.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999998763
No 450
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=92.43 E-value=0.065 Score=53.35 Aligned_cols=21 Identities=19% Similarity=0.099 Sum_probs=18.6
Q ss_pred EEEEEecCcchHHHHHHHHhc
Q 001998 209 IFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~ 229 (984)
++.|+|..|.||||+.+.+.-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 467999999999999998873
No 451
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=92.40 E-value=0.23 Score=53.16 Aligned_cols=84 Identities=21% Similarity=0.140 Sum_probs=49.3
Q ss_pred ceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCC-----cccHHHHHHHHH
Q 001998 206 TVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAIIEELEGSATD-----LHELNSLLRRIG 280 (984)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~ 280 (984)
.-+++-|+|..|+||||||..+.. .....-..++||.....++... ++.++.+... ....++......
T Consensus 52 ~G~ivEi~G~~ssGKttLaL~~ia--~~q~~g~~~a~ID~e~~ld~~~-----a~~lGvdl~rllv~~P~~~E~al~~~e 124 (322)
T PF00154_consen 52 RGRIVEIYGPESSGKTTLALHAIA--EAQKQGGICAFIDAEHALDPEY-----AESLGVDLDRLLVVQPDTGEQALWIAE 124 (322)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH--HHHHTT-EEEEEESSS---HHH-----HHHTT--GGGEEEEE-SSHHHHHHHHH
T ss_pred cCceEEEeCCCCCchhhhHHHHHH--hhhcccceeEEecCcccchhhH-----HHhcCccccceEEecCCcHHHHHHHHH
Confidence 456899999999999999988876 3444456789998887776643 3333322110 112344444444
Q ss_pred HHhC-CCceEEEEEcCC
Q 001998 281 ANIA-GQKFFMVLDNLW 296 (984)
Q Consensus 281 ~~l~-~kr~LlVlDdvw 296 (984)
..++ +..-++|+|.|-
T Consensus 125 ~lirsg~~~lVVvDSv~ 141 (322)
T PF00154_consen 125 QLIRSGAVDLVVVDSVA 141 (322)
T ss_dssp HHHHTTSESEEEEE-CT
T ss_pred HHhhcccccEEEEecCc
Confidence 4444 444588999983
No 452
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=92.39 E-value=0.72 Score=49.99 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=21.0
Q ss_pred EEEEEEecCcchHHHHHHHHhcC
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
.+++|+|..|.|||||.+.+..-
T Consensus 34 ei~gllGpNGaGKSTLl~~l~Gl 56 (306)
T PRK13537 34 ECFGLLGPNGAGKTTTLRMLLGL 56 (306)
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999873
No 453
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=92.39 E-value=1 Score=47.24 Aligned_cols=24 Identities=33% Similarity=0.549 Sum_probs=21.3
Q ss_pred eEEEEEEecCcchHHHHHHHHhcC
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
-.+++|+|..|.|||||.+.++.-
T Consensus 26 Ge~~~IvG~nGsGKSTLlk~l~Gl 49 (255)
T cd03236 26 GQVLGLVGPNGIGKSTALKILAGK 49 (255)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999998863
No 454
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=92.37 E-value=0.39 Score=53.40 Aligned_cols=53 Identities=26% Similarity=0.324 Sum_probs=37.5
Q ss_pred CCcccccHH---HHHHHHHHHhcCCC--CCCCCceEEEEEEecCcchHHHHHHHHhcC
Q 001998 178 VSEVRGRDE---EMRTLKSMLLCQGS--DQQTNTVQIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 178 ~~~~~Gr~~---~~~~l~~~L~~~~~--~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
-.++-|-|+ |+++|+++|.++.. ..++.=.+-|.++|++|.|||-||++|+..
T Consensus 303 F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGE 360 (752)
T KOG0734|consen 303 FEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGE 360 (752)
T ss_pred cccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcc
Confidence 345677765 66677788865431 111233567889999999999999999984
No 455
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=92.35 E-value=0.33 Score=50.24 Aligned_cols=116 Identities=12% Similarity=0.134 Sum_probs=66.5
Q ss_pred CcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccC-CCeEEEEEecCCCCHHHHHHH
Q 001998 179 SEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINN-FEIRVWVCVSDPFDEFSVAKA 257 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~~~wv~~s~~~~~~~~~~~ 257 (984)
..++|..-.++.++..+..--.+....+.-|++.+|..|.||.-.++.+.++....+- =+.+ ..
T Consensus 82 ~~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V---------------~~ 146 (344)
T KOG2170|consen 82 RALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFV---------------HH 146 (344)
T ss_pred HHhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhH---------------HH
Confidence 3577877777777776654221112456779999999999999999888875221110 0000 00
Q ss_pred HHHHhcCCCCCcccH----HHHHHHHHHHhC-CCceEEEEEcCCCCCcCChhhHHHhhc
Q 001998 258 IIEELEGSATDLHEL----NSLLRRIGANIA-GQKFFMVLDNLWTDDYRKWEPFRNCLM 311 (984)
Q Consensus 258 i~~~l~~~~~~~~~~----~~~~~~l~~~l~-~kr~LlVlDdvw~~~~~~~~~l~~~l~ 311 (984)
.+... .-+....+ +++...++..++ -+|-|+|+|+++.....-.+.|.+.+.
T Consensus 147 fvat~--hFP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~gLld~lkpfLd 203 (344)
T KOG2170|consen 147 FVATL--HFPHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPPGLLDVLKPFLD 203 (344)
T ss_pred hhhhc--cCCChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcCHhHHHHHhhhhc
Confidence 11111 11111112 345555555443 578999999997655555566666554
No 456
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=92.34 E-value=0.18 Score=54.19 Aligned_cols=49 Identities=22% Similarity=0.232 Sum_probs=33.6
Q ss_pred eEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHH
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKA 257 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 257 (984)
.+++.+.|.|||||||+|.+..- ........++-|+.....++..++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~--~lA~~g~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAV--KLAESGKKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHH--HHHHcCCcEEEEEeCCCCchHhhhcc
Confidence 47899999999999999987543 22233344777776666666555544
No 457
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=92.33 E-value=0.54 Score=44.98 Aligned_cols=21 Identities=33% Similarity=0.550 Sum_probs=19.3
Q ss_pred EEEEecCcchHHHHHHHHhcC
Q 001998 210 FSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 210 i~I~G~gGiGKTtLa~~v~~~ 230 (984)
|+|+|..|+|||||.+.+.+.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 689999999999999999875
No 458
>PF13479 AAA_24: AAA domain
Probab=92.33 E-value=0.35 Score=49.35 Aligned_cols=20 Identities=40% Similarity=0.358 Sum_probs=17.8
Q ss_pred EEEEEEecCcchHHHHHHHH
Q 001998 208 QIFSMVGMGGIGKTTLAQLA 227 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v 227 (984)
-.+.|+|.+|+||||+|..+
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC
Confidence 35789999999999999987
No 459
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=92.33 E-value=0.56 Score=48.93 Aligned_cols=88 Identities=11% Similarity=0.115 Sum_probs=54.0
Q ss_pred EEEEEEecCcchHHHHHHHHhcCccc--ccCCCeEEEEEecCCC-CHHHHHHHHHHHhcCC-------CCCcccHH----
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYNDNDV--INNFEIRVWVCVSDPF-DEFSVAKAIIEELEGS-------ATDLHELN---- 273 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~~~~--~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~---- 273 (984)
..++|.|-.|+|||+|+..+.+.... +++-+.++++-+.+.. .+.++..++.+.=... ..+.....
T Consensus 70 QR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~a 149 (276)
T cd01135 70 QKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERIIT 149 (276)
T ss_pred CEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHHH
Confidence 45789999999999999988875331 2335778888887665 4556666655431111 11111111
Q ss_pred -HHHHHHHHHh---CCCceEEEEEcC
Q 001998 274 -SLLRRIGANI---AGQKFFMVLDNL 295 (984)
Q Consensus 274 -~~~~~l~~~l---~~kr~LlVlDdv 295 (984)
...-.+.+++ +++++|+++||+
T Consensus 150 ~~~a~aiAEyfrd~~g~~VLl~~D~l 175 (276)
T cd01135 150 PRMALTTAEYLAYEKGKHVLVILTDM 175 (276)
T ss_pred HHHHHHHHHHHHhccCCeEEEEEcCh
Confidence 1122333444 378999999998
No 460
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=92.29 E-value=0.37 Score=53.93 Aligned_cols=87 Identities=14% Similarity=0.131 Sum_probs=50.0
Q ss_pred eEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHHHHHhcCC-------CCCccc-----HHH
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAIIEELEGS-------ATDLHE-----LNS 274 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~-------~~~~~~-----~~~ 274 (984)
-..++|+|..|.|||||++.++.... ....++...-.+...+.++++..+..-+.. ..+... ...
T Consensus 156 Gqri~I~G~sG~GKTtLl~~Ia~~~~---~~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~~ 232 (432)
T PRK06793 156 GQKIGIFAGSGVGKSTLLGMIAKNAK---ADINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAAK 232 (432)
T ss_pred CcEEEEECCCCCChHHHHHHHhccCC---CCeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHHH
Confidence 34789999999999999999987432 112233332233366767766665542211 111111 111
Q ss_pred HHHHHHHHh--CCCceEEEEEcCC
Q 001998 275 LLRRIGANI--AGQKFFMVLDNLW 296 (984)
Q Consensus 275 ~~~~l~~~l--~~kr~LlVlDdvw 296 (984)
....+.+++ ++++.||++||+-
T Consensus 233 ~a~~iAEyfr~~G~~VLlilDslT 256 (432)
T PRK06793 233 LATSIAEYFRDQGNNVLLMMDSVT 256 (432)
T ss_pred HHHHHHHHHHHcCCcEEEEecchH
Confidence 222233333 5899999999983
No 461
>PRK05973 replicative DNA helicase; Provisional
Probab=92.28 E-value=0.61 Score=47.89 Aligned_cols=49 Identities=16% Similarity=0.129 Sum_probs=32.1
Q ss_pred ceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHH
Q 001998 206 TVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAI 258 (984)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 258 (984)
.-.++.|.|.+|+|||++|.++... ...+-..+++++.... ..++...+
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~--~a~~Ge~vlyfSlEes--~~~i~~R~ 111 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVE--AMKSGRTGVFFTLEYT--EQDVRDRL 111 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEEEeCC--HHHHHHHH
Confidence 3457889999999999999887653 2223345667755443 44554444
No 462
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=92.27 E-value=0.11 Score=48.80 Aligned_cols=23 Identities=30% Similarity=0.629 Sum_probs=20.9
Q ss_pred eEEEEEEecCcchHHHHHHHHhc
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
.+++.|+|.+|+||||+.+.+-.
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~ 26 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALK 26 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHH
Confidence 68999999999999999987776
No 463
>PRK04328 hypothetical protein; Provisional
Probab=92.25 E-value=0.38 Score=50.37 Aligned_cols=40 Identities=20% Similarity=0.264 Sum_probs=29.6
Q ss_pred ceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecC
Q 001998 206 TVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSD 247 (984)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~ 247 (984)
.-+++.|.|.+|.|||+||.++... .. ..-...+|++...
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~-~~-~~ge~~lyis~ee 61 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWN-GL-QMGEPGVYVALEE 61 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH-HH-hcCCcEEEEEeeC
Confidence 4578999999999999999876542 12 2345678887665
No 464
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=92.22 E-value=1.3 Score=45.62 Aligned_cols=24 Identities=33% Similarity=0.430 Sum_probs=21.2
Q ss_pred eEEEEEEecCcchHHHHHHHHhcC
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
-.+++|+|..|.|||||++.++.-
T Consensus 40 Ge~~~i~G~nGsGKSTLl~~l~Gl 63 (226)
T cd03248 40 GEVTALVGPSGSGKSTVVALLENF 63 (226)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 348999999999999999999864
No 465
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=92.19 E-value=0.63 Score=52.20 Aligned_cols=85 Identities=19% Similarity=0.268 Sum_probs=49.6
Q ss_pred eEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCC-CCHHHHHHHHHHHhcCC-------CCCcccHHH----
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDP-FDEFSVAKAIIEELEGS-------ATDLHELNS---- 274 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~-------~~~~~~~~~---- 274 (984)
-..++|+|..|+|||||++.+.+.. +.+..+++.+.+. ..+.+++.+....-... ..+....+.
T Consensus 155 GqrigI~G~sG~GKSTLL~~I~~~~----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a~ 230 (433)
T PRK07594 155 GQRVGIFSAPGVGKSTLLAMLCNAP----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRAL 230 (433)
T ss_pred CCEEEEECCCCCCccHHHHHhcCCC----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHHH
Confidence 3578999999999999999998742 3455566655543 34445555543311000 111111111
Q ss_pred -HHHHHHHHh--CCCceEEEEEcC
Q 001998 275 -LLRRIGANI--AGQKFFMVLDNL 295 (984)
Q Consensus 275 -~~~~l~~~l--~~kr~LlVlDdv 295 (984)
..-.+.+++ +++++|+++||+
T Consensus 231 ~~a~tiAEyfrd~G~~VLl~~Dsl 254 (433)
T PRK07594 231 FVATTIAEFFRDNGKRVVLLADSL 254 (433)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeCH
Confidence 112233333 589999999998
No 466
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=92.18 E-value=0.72 Score=45.82 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=22.1
Q ss_pred ceEEEEEEecCcchHHHHHHHHhcC
Q 001998 206 TVQIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
...++.|.|.+|.||||+|+.+...
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~~ 41 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEKK 41 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3569999999999999999999873
No 467
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=92.15 E-value=0.28 Score=51.49 Aligned_cols=21 Identities=24% Similarity=0.525 Sum_probs=19.1
Q ss_pred EEEEecCcchHHHHHHHHhcC
Q 001998 210 FSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 210 i~I~G~gGiGKTtLa~~v~~~ 230 (984)
|.++|.+|+||||+|+.+...
T Consensus 2 Ivl~G~pGSGKST~a~~La~~ 22 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKK 22 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 789999999999999998863
No 468
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=92.14 E-value=0.17 Score=50.95 Aligned_cols=22 Identities=41% Similarity=0.635 Sum_probs=20.4
Q ss_pred EEEEEEecCcchHHHHHHHHhc
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
.+++|+|..|.|||||++.+..
T Consensus 34 e~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 34 ETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CEEEEEcCCCCCHHHHHHHHhc
Confidence 4799999999999999999976
No 469
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.12 E-value=0.0091 Score=58.62 Aligned_cols=83 Identities=12% Similarity=0.054 Sum_probs=57.0
Q ss_pred ccccccee-cCCCCccccCcccccccCccceEEecCCCccccchhhccCCcccEEecccccccccccccccCCCCCCeEE
Q 001998 589 DHLTYGED-DGGENTVHDIPREIEKLIHLRSLRLAGLKIEELPETCCKLFNLQTLDINECYRLKRLPQGVGSLVNLRHLV 667 (984)
Q Consensus 589 ~~l~~Lrv-~l~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~ 667 (984)
..++...+ |++.|.+..+-..++.++.|..|+++.|.|..+|...+.+..+..+++..|+ .+.+|.+.+.++.+++++
T Consensus 39 ~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNN-HSQQPKSQKKEPHPKKNE 117 (326)
T ss_pred hccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccc-hhhCCccccccCCcchhh
Confidence 34455555 6666666666666777777777777777777777777777777777776665 677777777777777777
Q ss_pred eccCC
Q 001998 668 VSLNG 672 (984)
Q Consensus 668 l~~~~ 672 (984)
..++.
T Consensus 118 ~k~~~ 122 (326)
T KOG0473|consen 118 QKKTE 122 (326)
T ss_pred hccCc
Confidence 76663
No 470
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=92.11 E-value=0.082 Score=52.58 Aligned_cols=21 Identities=24% Similarity=0.270 Sum_probs=19.4
Q ss_pred EEEEEecCcchHHHHHHHHhc
Q 001998 209 IFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~ 229 (984)
||.|+|++|+||||+|+.+..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999886
No 471
>PRK15115 response regulator GlrR; Provisional
Probab=92.11 E-value=1 Score=51.95 Aligned_cols=46 Identities=24% Similarity=0.168 Sum_probs=32.7
Q ss_pred cccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcC
Q 001998 180 EVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 180 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
.++|....+.++.+....-.. .-..+.|.|..|.|||++|+.+.+.
T Consensus 135 ~lig~s~~~~~~~~~~~~~a~-----~~~~vli~Ge~GtGk~~lA~~ih~~ 180 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVAQ-----SDVSVLINGQSGTGKEILAQAIHNA 180 (444)
T ss_pred cccccCHHHHHHHHHHHhhcc-----CCCeEEEEcCCcchHHHHHHHHHHh
Confidence 567877777776665543221 1234679999999999999999874
No 472
>PRK15453 phosphoribulokinase; Provisional
Probab=92.08 E-value=0.64 Score=48.54 Aligned_cols=78 Identities=14% Similarity=0.026 Sum_probs=42.4
Q ss_pred ceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCC--CCHHHHHHHHHH--Hhc--CCC--CCcccHHHHHH
Q 001998 206 TVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDP--FDEFSVAKAIIE--ELE--GSA--TDLHELNSLLR 277 (984)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~--~~~~~~~~~i~~--~l~--~~~--~~~~~~~~~~~ 277 (984)
...+|+|.|.+|.||||+|+.+... ....=...+.++...- ++..+.-..+.. .-+ -+. .+..+.+.+.+
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~i--f~~~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~~ 81 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKI--FRRENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELEQ 81 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH--HhhcCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHHH
Confidence 4579999999999999999988752 2111112333433222 233332222211 111 112 45566777777
Q ss_pred HHHHHhCC
Q 001998 278 RIGANIAG 285 (984)
Q Consensus 278 ~l~~~l~~ 285 (984)
.++...++
T Consensus 82 ~l~~l~~~ 89 (290)
T PRK15453 82 LFREYGET 89 (290)
T ss_pred HHHHHhcC
Confidence 77766553
No 473
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=92.08 E-value=0.46 Score=56.15 Aligned_cols=118 Identities=15% Similarity=0.150 Sum_probs=58.8
Q ss_pred eEEEEEEecCcchHHHHHHHHhcCcc-cccCCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCC-------cccHHHHHHH
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYNDND-VINNFEIRVWVCVSDPFDEFSVAKAIIEELEGSATD-------LHELNSLLRR 278 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~~~~~ 278 (984)
.++..|.|.+|.||||+++.+..... ....=...+.+......-...+...+...+..-... ......+.+.
T Consensus 167 ~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~~~~~~~~~~~a~TiHrl 246 (615)
T PRK10875 167 RRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEEASTLHRL 246 (615)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccchhhhhcCCCchHHHHHH
Confidence 45788999999999999988876311 111112455555554444444444443332211000 0011222222
Q ss_pred HHHHhCC--------Cc---eEEEEEcCCCCCcCChhhHHHhhcCCCCCcEEEEEccchH
Q 001998 279 IGANIAG--------QK---FFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILLTTRKET 327 (984)
Q Consensus 279 l~~~l~~--------kr---~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~ 327 (984)
+.....+ .+ =+||+|.+..-+......+...++ +++|+|+---..+
T Consensus 247 Lg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd~~lm~~ll~al~---~~~rlIlvGD~~Q 303 (615)
T PRK10875 247 LGAQPGSQRLRYHAGNPLHLDVLVVDEASMVDLPMMARLIDALP---PHARVIFLGDRDQ 303 (615)
T ss_pred hCcCCCccchhhccccCCCCCeEEEChHhcccHHHHHHHHHhcc---cCCEEEEecchhh
Confidence 2111111 11 289999985544333444444444 4678887654433
No 474
>PRK00131 aroK shikimate kinase; Reviewed
Probab=92.07 E-value=0.097 Score=51.55 Aligned_cols=24 Identities=25% Similarity=0.415 Sum_probs=21.3
Q ss_pred eEEEEEEecCcchHHHHHHHHhcC
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
...|.++|++|+||||+|+.+...
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~ 27 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKR 27 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Confidence 357899999999999999999873
No 475
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=92.06 E-value=0.12 Score=49.96 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=22.3
Q ss_pred ceEEEEEEecCcchHHHHHHHHhcC
Q 001998 206 TVQIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
...+++|+|..|.|||||++.+...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 4669999999999999999999873
No 476
>PRK08149 ATP synthase SpaL; Validated
Probab=92.00 E-value=0.5 Score=52.86 Aligned_cols=85 Identities=12% Similarity=0.246 Sum_probs=50.1
Q ss_pred eEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEec-CCCCHHHHHHHHHHHhcCC-------CCCcccHH-----
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVS-DPFDEFSVAKAIIEELEGS-------ATDLHELN----- 273 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s-~~~~~~~~~~~i~~~l~~~-------~~~~~~~~----- 273 (984)
-..++|+|..|.|||||+..+++.. .-+.++...+. ...++.++..+........ ..+.....
T Consensus 151 Gq~i~I~G~sG~GKTTLl~~i~~~~----~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~ 226 (428)
T PRK08149 151 GQRMGIFASAGCGKTSLMNMLIEHS----EADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAA 226 (428)
T ss_pred CCEEEEECCCCCChhHHHHHHhcCC----CCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHH
Confidence 3478999999999999999998742 22344444444 3345566666666543211 11111111
Q ss_pred HHHHHHHHHh--CCCceEEEEEcC
Q 001998 274 SLLRRIGANI--AGQKFFMVLDNL 295 (984)
Q Consensus 274 ~~~~~l~~~l--~~kr~LlVlDdv 295 (984)
.....+.+++ ++|++||++||+
T Consensus 227 ~~a~tiAE~fr~~G~~Vll~~Dsl 250 (428)
T PRK08149 227 LVATTVAEYFRDQGKRVVLFIDSM 250 (428)
T ss_pred HHHHHHHHHHHHcCCCEEEEccch
Confidence 1122223333 599999999998
No 477
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=91.98 E-value=1.5 Score=46.38 Aligned_cols=59 Identities=10% Similarity=0.029 Sum_probs=40.1
Q ss_pred CCceEEEEEcCCCCCcCChhhHHHhhcCCCCCcEEEEEccch-HHHhh-cCCCCeEeCCCC
Q 001998 285 GQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILLTTRKE-TVARM-MESTDIVYVQGL 343 (984)
Q Consensus 285 ~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~-~v~~~-~~~~~~~~l~~L 343 (984)
+++=++|+|++...+.+.+..+...+-.-..++.+|++|.+. .+... ......+.+.++
T Consensus 94 ~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SRcq~~~~~~~ 154 (290)
T PRK05917 94 SPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRSLSIHIPME 154 (290)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhcceEEEccch
Confidence 555588999998777778888888887766777777777663 44333 233456666654
No 478
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=91.97 E-value=0.12 Score=52.39 Aligned_cols=27 Identities=37% Similarity=0.416 Sum_probs=22.9
Q ss_pred CceEEEEEEecCcchHHHHHHHHhcCc
Q 001998 205 NTVQIFSMVGMGGIGKTTLAQLAYNDN 231 (984)
Q Consensus 205 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 231 (984)
+...+|.++||+|.||||..+.++.+.
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl 43 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHL 43 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHH
Confidence 346678899999999999999998753
No 479
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=91.95 E-value=0.68 Score=45.57 Aligned_cols=25 Identities=32% Similarity=0.380 Sum_probs=21.5
Q ss_pred ceEEEEEEecCcchHHHHHHHHhcC
Q 001998 206 TVQIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
...-|.|.|+.|+||||+.+.+...
T Consensus 13 ~~~~ililGl~~sGKTtll~~l~~~ 37 (175)
T PF00025_consen 13 KEIKILILGLDGSGKTTLLNRLKNG 37 (175)
T ss_dssp SEEEEEEEESTTSSHHHHHHHHHSS
T ss_pred cEEEEEEECCCccchHHHHHHhhhc
Confidence 4556789999999999999999864
No 480
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=91.95 E-value=1.2 Score=48.18 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=22.4
Q ss_pred ceEEEEEEecCcchHHHHHHHHhcC
Q 001998 206 TVQIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
...++.++|.+|+||||++..++..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~ 137 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHK 137 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4689999999999999999988874
No 481
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=91.95 E-value=0.1 Score=51.47 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=20.8
Q ss_pred EEEEEEecCcchHHHHHHHHhcC
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
++|.+.|++|+||||+|+.+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 48999999999999999999863
No 482
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=91.95 E-value=0.39 Score=57.00 Aligned_cols=74 Identities=15% Similarity=0.150 Sum_probs=51.1
Q ss_pred CcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCccccc-CCCeEEEEEecCCCCHHHHHHH
Q 001998 179 SEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVIN-NFEIRVWVCVSDPFDEFSVAKA 257 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~~~~wv~~s~~~~~~~~~~~ 257 (984)
++++|.++.++.+...+... +-+.++|+.|+||||+|+.+.+. +.. .|...+++ .....+...+++.
T Consensus 18 ~~viG~~~a~~~l~~a~~~~---------~~~ll~G~pG~GKT~la~~la~~--l~~~~~~~~~~~-~n~~~~~~~~~~~ 85 (608)
T TIGR00764 18 DQVIGQEEAVEIIKKAAKQK---------RNVLLIGEPGVGKSMLAKAMAEL--LPDEELEDILVY-PNPEDPNMPRIVE 85 (608)
T ss_pred hhccCHHHHHHHHHHHHHcC---------CCEEEECCCCCCHHHHHHHHHHH--cCchhheeEEEE-eCCCCCchHHHHH
Confidence 47899999888888777532 24558999999999999999873 333 33333322 3334466677888
Q ss_pred HHHHhcC
Q 001998 258 IIEELEG 264 (984)
Q Consensus 258 i~~~l~~ 264 (984)
++..++.
T Consensus 86 v~~~~g~ 92 (608)
T TIGR00764 86 VPAGEGR 92 (608)
T ss_pred HHHhhch
Confidence 8877654
No 483
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=91.94 E-value=0.096 Score=50.11 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=19.5
Q ss_pred EEEEEecCcchHHHHHHHHhcC
Q 001998 209 IFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
++.|+|.+|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 3678999999999999998873
No 484
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=91.94 E-value=0.11 Score=51.53 Aligned_cols=22 Identities=27% Similarity=0.530 Sum_probs=20.5
Q ss_pred EEEEEEecCcchHHHHHHHHhc
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
++++|+|+.|+||||||+.+.+
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHc
Confidence 4789999999999999999987
No 485
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=91.94 E-value=0.25 Score=49.06 Aligned_cols=42 Identities=29% Similarity=0.372 Sum_probs=32.2
Q ss_pred CcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhc
Q 001998 179 SEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
++++|.+..+..+.-.... ..-+.++|..|+|||++|+.+-.
T Consensus 3 ~dI~GQe~aKrAL~iAAaG---------~h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAG---------GHHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHC---------C--EEEES-CCCTHHHHHHHHHH
T ss_pred hhhcCcHHHHHHHHHHHcC---------CCCeEEECCCCCCHHHHHHHHHH
Confidence 5789999998888776642 23578999999999999998865
No 486
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=91.93 E-value=0.16 Score=51.79 Aligned_cols=66 Identities=21% Similarity=0.191 Sum_probs=37.4
Q ss_pred HHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHH
Q 001998 187 EMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKA 257 (984)
Q Consensus 187 ~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 257 (984)
+..++++.+.... .+..+|+|.|.+|+|||||...+....+.+++=-.++=|.=|.+++--.++.+
T Consensus 14 ~~~~ll~~l~~~~-----g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGD 79 (266)
T PF03308_consen 14 EARELLKRLYPHT-----GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGD 79 (266)
T ss_dssp HHHHHHHHHGGGT-----T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--
T ss_pred HHHHHHHHHHhhc-----CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCccccc
Confidence 4456666665443 25679999999999999999887764322222234555555666766555544
No 487
>PRK12678 transcription termination factor Rho; Provisional
Probab=91.93 E-value=0.23 Score=56.50 Aligned_cols=84 Identities=23% Similarity=0.230 Sum_probs=46.3
Q ss_pred EEEEEEecCcchHHHHHHHHhcCcccccCCCeEEE-EEecCCCCHHHHHHHHHHHhcC-----CCCCccc----HHHHHH
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVW-VCVSDPFDEFSVAKAIIEELEG-----SATDLHE----LNSLLR 277 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~w-v~~s~~~~~~~~~~~i~~~l~~-----~~~~~~~----~~~~~~ 277 (984)
....|+|..|+|||||++.+.+.. ...+-++.++ +-|.+..... .+|-+.+.+ ....... ...+.-
T Consensus 417 QR~LIvgpp~aGKTtLL~~IAn~i-~~n~~~~~~ivvLIgERpeEV---tdm~rsVkgeVVasT~D~p~~~~~~~a~~ai 492 (672)
T PRK12678 417 QRGLIVSPPKAGKTTILQNIANAI-TTNNPECHLMVVLVDERPEEV---TDMQRSVKGEVIASTFDRPPSDHTTVAELAI 492 (672)
T ss_pred CEeEEeCCCCCCHHHHHHHHHHHH-hhcCCCeEEEEEEEeCchhhH---HHHHHhccceEEEECCCCCHHHHHHHHHHHH
Confidence 457899999999999999999831 1223344443 3444433222 223333321 1111111 112222
Q ss_pred HHHHHh--CCCceEEEEEcC
Q 001998 278 RIGANI--AGQKFFMVLDNL 295 (984)
Q Consensus 278 ~l~~~l--~~kr~LlVlDdv 295 (984)
.+.+++ .++.+||++|++
T Consensus 493 ~~Ae~fre~G~dVlillDSl 512 (672)
T PRK12678 493 ERAKRLVELGKDVVVLLDSI 512 (672)
T ss_pred HHHHHHHHcCCCEEEEEeCc
Confidence 333444 689999999998
No 488
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=91.88 E-value=0.56 Score=44.10 Aligned_cols=35 Identities=23% Similarity=0.380 Sum_probs=27.3
Q ss_pred EEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEE
Q 001998 209 IFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVC 244 (984)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 244 (984)
-+.|+|-||+||+++.+.+|.- -..+.|...+||.
T Consensus 22 K~vivGng~VGKssmiqryCkg-ifTkdykktIgvd 56 (246)
T KOG4252|consen 22 KFVIVGNGSVGKSSMIQRYCKG-IFTKDYKKTIGVD 56 (246)
T ss_pred EEEEECCCccchHHHHHHHhcc-ccccccccccchh
Confidence 4579999999999999999973 2245566788884
No 489
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=91.88 E-value=0.13 Score=48.73 Aligned_cols=25 Identities=24% Similarity=0.399 Sum_probs=22.6
Q ss_pred CceEEEEEEecCcchHHHHHHHHhc
Q 001998 205 NTVQIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 205 ~~~~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
+...||.+.|.+|.||||+|.+++.
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~ 45 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEE 45 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHH
Confidence 3467999999999999999999987
No 490
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=91.86 E-value=1.7 Score=46.27 Aligned_cols=23 Identities=30% Similarity=0.343 Sum_probs=20.7
Q ss_pred EEEEEEecCcchHHHHHHHHhcC
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
.+++|+|..|.|||||++.++.-
T Consensus 31 e~~~IvG~nGsGKSTLl~~L~gl 53 (275)
T cd03289 31 QRVGLLGRTGSGKSTLLSAFLRL 53 (275)
T ss_pred CEEEEECCCCCCHHHHHHHHhhh
Confidence 47999999999999999999863
No 491
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=91.85 E-value=1.3 Score=47.66 Aligned_cols=24 Identities=38% Similarity=0.552 Sum_probs=21.6
Q ss_pred eEEEEEEecCcchHHHHHHHHhcC
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
-.++++.|..|.|||||.+.+..-
T Consensus 31 Gei~gllG~NGAGKTTllk~l~gl 54 (293)
T COG1131 31 GEIFGLLGPNGAGKTTLLKILAGL 54 (293)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999874
No 492
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=91.78 E-value=1.4 Score=52.04 Aligned_cols=23 Identities=26% Similarity=0.592 Sum_probs=21.0
Q ss_pred EEEEEEecCcchHHHHHHHHhcC
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
.+++|+|..|.|||||.+.++..
T Consensus 28 e~~~liG~NGsGKSTLl~~l~Gl 50 (530)
T PRK15064 28 NRYGLIGANGCGKSTFMKILGGD 50 (530)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999874
No 493
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=91.78 E-value=1.7 Score=49.42 Aligned_cols=155 Identities=20% Similarity=0.276 Sum_probs=87.4
Q ss_pred eEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCC
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAIIEELEGSATDLHELNSLLRRIGANIAGQ 286 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 286 (984)
..=|.++|++|.|||-||++|+| +.+.+| ++|-.+ +++..- -+ .....+.+.+++.-..-
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVAN--Eag~NF-----isVKGP----ELlNkY----VG-----ESErAVR~vFqRAR~sa 604 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVAN--EAGANF-----ISVKGP----ELLNKY----VG-----ESERAVRQVFQRARASA 604 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhh--hccCce-----EeecCH----HHHHHH----hh-----hHHHHHHHHHHHhhcCC
Confidence 44577999999999999999999 455565 222211 122111 11 11223344455555678
Q ss_pred ceEEEEEcCCCC-----CcCChh------hHHHhhcC--CCCCcEEEEEccchHHHh-hc-CC---CCeEeCCCCChHhH
Q 001998 287 KFFMVLDNLWTD-----DYRKWE------PFRNCLMN--GLRGSKILLTTRKETVAR-MM-ES---TDIVYVQGLSEPEC 348 (984)
Q Consensus 287 r~LlVlDdvw~~-----~~~~~~------~l~~~l~~--~~~gs~iiiTtr~~~v~~-~~-~~---~~~~~l~~L~~~~~ 348 (984)
++.|+||.+..- +...|. ++..-+.. ...|--||-.|...++-. .+ .+ .....++.-+.+|-
T Consensus 605 PCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR 684 (802)
T KOG0733|consen 605 PCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEER 684 (802)
T ss_pred CeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHH
Confidence 999999998531 112332 22222221 235666666666555432 22 22 45667788888888
Q ss_pred HHHHHHHhcCCCCC-CCchhHHHHHHHHHHhcCCCh
Q 001998 349 WSLFRRFAFSGRTP-LECDQLEEIGRGIVRKCKGLP 383 (984)
Q Consensus 349 ~~lf~~~~~~~~~~-~~~~~l~~~~~~i~~~~~GlP 383 (984)
.++++........+ ..+-++.+||+. .+|.|.-
T Consensus 685 ~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 685 VAILKTITKNTKPPLSSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred HHHHHHHhccCCCCCCcccCHHHHhhc--ccccCCc
Confidence 99998887542222 233467776554 3555543
No 494
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=91.77 E-value=1.8 Score=41.87 Aligned_cols=22 Identities=32% Similarity=0.529 Sum_probs=19.8
Q ss_pred EEEEEEecCcchHHHHHHHHhc
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
..+.|.|..|+|||||.+.++.
T Consensus 29 e~~~i~G~NG~GKTtLLRilaG 50 (209)
T COG4133 29 EALQITGPNGAGKTTLLRILAG 50 (209)
T ss_pred CEEEEECCCCCcHHHHHHHHHc
Confidence 3678999999999999999986
No 495
>PRK05922 type III secretion system ATPase; Validated
Probab=91.77 E-value=0.59 Score=52.36 Aligned_cols=84 Identities=15% Similarity=0.194 Sum_probs=47.9
Q ss_pred EEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCC-CCHHHHHHHHHHHhcCC-------CCCcccHH-----H
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDP-FDEFSVAKAIIEELEGS-------ATDLHELN-----S 274 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~-------~~~~~~~~-----~ 274 (984)
..++|+|..|+|||||.+.+.+.. ..+...++.+... ..+.+.+.+........ ..+..... .
T Consensus 158 qrigI~G~nG~GKSTLL~~Ia~~~----~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~~ 233 (434)
T PRK05922 158 QRIGVFSEPGSGKSSLLSTIAKGS----KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAGR 233 (434)
T ss_pred cEEEEECCCCCChHHHHHHHhccC----CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHHH
Confidence 458999999999999999998742 2234444444332 33445555544333211 11111111 1
Q ss_pred HHHHHHHHh--CCCceEEEEEcC
Q 001998 275 LLRRIGANI--AGQKFFMVLDNL 295 (984)
Q Consensus 275 ~~~~l~~~l--~~kr~LlVlDdv 295 (984)
..-.+.+++ +++++|+++||+
T Consensus 234 ~a~tiAEyfrd~G~~VLl~~Dsl 256 (434)
T PRK05922 234 AAMTIAEYFRDQGHRVLFIMDSL 256 (434)
T ss_pred HHHHHHHHHHHcCCCEEEeccch
Confidence 122233443 589999999998
No 496
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=91.75 E-value=0.23 Score=61.68 Aligned_cols=138 Identities=16% Similarity=0.207 Sum_probs=71.4
Q ss_pred eEEEEEEecCcchHHHHHHHHhcCc--ccccCCCeEEEEEecCC-----CCHH-HHHHHHHHHhcCCCCCcccHHHHHHH
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYNDN--DVINNFEIRVWVCVSDP-----FDEF-SVAKAIIEELEGSATDLHELNSLLRR 278 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~--~~~~~F~~~~wv~~s~~-----~~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~ 278 (984)
..-+.|+|.+|.||||+.+.+.-.. +....=+..+++.+... +... .+..-+...+...... .+....
T Consensus 222 ~~~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~~~~~~~q~~~~~~l~~~~~~~~~~----~~~~~~ 297 (824)
T COG5635 222 YAKLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALARKFEKQLSLIDYLAEELFSQGIA----KQLIEA 297 (824)
T ss_pred hhheeeecCCCCCceehHHHHHHHhccCcCCcccCceeeechhHHHhhhhHhhccHHHHHHHHHhccCCc----chhhHH
Confidence 3468899999999999998765321 11111233444443311 1111 2222222222222111 122222
Q ss_pred HHHHhCCCceEEEEEcCCCCCcCChhh----HHHhhcCCCCCcEEEEEccchHHHhhcCCCCeEeCCCCChHhHH
Q 001998 279 IGANIAGQKFFMVLDNLWTDDYRKWEP----FRNCLMNGLRGSKILLTTRKETVARMMESTDIVYVQGLSEPECW 349 (984)
Q Consensus 279 l~~~l~~kr~LlVlDdvw~~~~~~~~~----l~~~l~~~~~gs~iiiTtr~~~v~~~~~~~~~~~l~~L~~~~~~ 349 (984)
..+.++..++++.+|.+.......-.. +.. +-..-+.+++|+|+|....-........+++..+.++...
T Consensus 298 ~~e~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~-f~~~~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~ 371 (824)
T COG5635 298 HQELLKTGKLLLLLDGLDELEPKNQRALIREINK-FLQEYPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQIN 371 (824)
T ss_pred HHHHHhccchhhHhhccchhhhhhHHHHHHHHHH-HhhhccCCeEEEEeccchhhhhhhhhhhccchhhhHHHHH
Confidence 356788999999999985422211111 111 2223468899999997654444333445556666555543
No 497
>PTZ00185 ATPase alpha subunit; Provisional
Probab=91.72 E-value=0.87 Score=51.45 Aligned_cols=87 Identities=20% Similarity=0.243 Sum_probs=51.7
Q ss_pred EEEEEEecCcchHHHHH-HHHhcCccc-----ccCCCeEEEEEecCCCCHHHHHHHHHHHhcC-C--------CCCcccH
Q 001998 208 QIFSMVGMGGIGKTTLA-QLAYNDNDV-----INNFEIRVWVCVSDPFDEFSVAKAIIEELEG-S--------ATDLHEL 272 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa-~~v~~~~~~-----~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~-~--------~~~~~~~ 272 (984)
..++|.|-.|+|||+|| ..+.|...+ .++-+.++++-+.+......-+.+.+++-+. . ..+..-.
T Consensus 190 QR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~~~ 269 (574)
T PTZ00185 190 QRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAGL 269 (574)
T ss_pred CEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCHHH
Confidence 45789999999999997 566664322 1344577888888776544334444444321 1 1111111
Q ss_pred --------HHHHHHHHHHhCCCceEEEEEcCC
Q 001998 273 --------NSLLRRIGANIAGQKFFMVLDNLW 296 (984)
Q Consensus 273 --------~~~~~~l~~~l~~kr~LlVlDdvw 296 (984)
-.+.+.++. +++..|+|+||+-
T Consensus 270 r~~Apy~a~tiAEYFrd--~GkdVLiv~DDLT 299 (574)
T PTZ00185 270 QYLAPYSGVTMGEYFMN--RGRHCLCVYDDLS 299 (574)
T ss_pred HHHHHHHHHHHHHHHHH--cCCCEEEEEcCch
Confidence 122333332 5899999999984
No 498
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=91.71 E-value=0.4 Score=57.60 Aligned_cols=85 Identities=16% Similarity=0.134 Sum_probs=54.9
Q ss_pred CceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHHHHHhcCCCC-----CcccHHHHHHHH
Q 001998 205 NTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAIIEELEGSAT-----DLHELNSLLRRI 279 (984)
Q Consensus 205 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l 279 (984)
+.-+++-|+|..|+||||||..++.. ....=..++|+.....++.. .+++++.+.. .....++....+
T Consensus 58 p~GsiteI~G~~GsGKTtLal~~~~~--a~~~G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~~~~~E~~l~~i 130 (790)
T PRK09519 58 PRGRVIEIYGPESSGKTTVALHAVAN--AQAAGGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQPDTGEQALEIA 130 (790)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchhHH-----HHHHcCCChhHeEEecCCCHHHHHHHH
Confidence 35678899999999999999776542 22333567899887777742 5566654321 112234455555
Q ss_pred HHHhC-CCceEEEEEcCC
Q 001998 280 GANIA-GQKFFMVLDNLW 296 (984)
Q Consensus 280 ~~~l~-~kr~LlVlDdvw 296 (984)
...+. ++--|||+|.+-
T Consensus 131 ~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 131 DMLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHHhhcCCCeEEEEcchh
Confidence 55554 456689999984
No 499
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.68 E-value=1.8 Score=45.39 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=20.8
Q ss_pred EEEEEEecCcchHHHHHHHHhcC
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
.+++|+|..|.|||||.+.++..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl 51 (246)
T PRK14269 29 KITALIGASGCGKSTFLRCFNRM 51 (246)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 47999999999999999999863
No 500
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=91.68 E-value=0.16 Score=52.66 Aligned_cols=67 Identities=22% Similarity=0.213 Sum_probs=45.7
Q ss_pred HHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHHHH
Q 001998 189 RTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAIIE 260 (984)
Q Consensus 189 ~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 260 (984)
.+++..+.... .+..||+|.|.+|+|||||.-.+.....-+++=-.++=|.-|++++--.++.+=++
T Consensus 38 ~~ll~~l~p~t-----G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiR 104 (323)
T COG1703 38 RELLRALYPRT-----GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIR 104 (323)
T ss_pred HHHHHHHhhcC-----CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhh
Confidence 34455454333 35779999999999999999888765434444445666777888877666655443
Done!