Query 001998
Match_columns 984
No_of_seqs 514 out of 4454
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 08:04:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001998.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001998hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 2.6E-49 8.9E-54 465.1 27.1 316 182-524 131-473 (549)
2 1vt4_I APAF-1 related killer D 100.0 9.9E-40 3.4E-44 383.9 16.7 285 180-515 129-436 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 6.7E-37 2.3E-41 400.5 25.1 312 176-522 121-452 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 5.8E-34 2E-38 340.5 25.3 306 177-519 122-449 (591)
5 3rgz_A Protein brassinosteroid 99.9 7.1E-26 2.4E-30 278.4 17.3 391 542-968 268-721 (768)
6 3rgz_A Protein brassinosteroid 99.9 5.2E-26 1.8E-30 279.6 14.7 253 543-823 294-554 (768)
7 4ecn_A Leucine-rich repeat pro 99.9 5.5E-25 1.9E-29 267.9 17.7 344 541-935 446-840 (876)
8 4eco_A Uncharacterized protein 99.9 1.6E-25 5.5E-30 268.7 12.8 153 543-697 81-342 (636)
9 3vq2_A TLR4, TOLL-like recepto 99.9 6.7E-24 2.3E-28 254.9 23.9 388 541-967 30-513 (606)
10 4eco_A Uncharacterized protein 99.9 7.2E-25 2.4E-29 263.0 14.5 342 541-935 204-600 (636)
11 3t6q_A CD180 antigen; protein- 99.9 1E-23 3.4E-28 253.4 22.6 365 541-934 31-461 (606)
12 3vq2_A TLR4, TOLL-like recepto 99.9 2.7E-24 9.4E-29 258.3 16.5 105 542-648 55-164 (606)
13 4ecn_A Leucine-rich repeat pro 99.9 7.1E-24 2.4E-28 258.2 19.0 337 585-967 441-843 (876)
14 1o6v_A Internalin A; bacterial 99.9 3.7E-23 1.3E-27 239.3 24.2 337 542-934 45-387 (466)
15 1ziw_A TOLL-like receptor 3; i 99.9 2.6E-23 8.9E-28 253.3 20.7 155 541-698 23-184 (680)
16 3t6q_A CD180 antigen; protein- 99.9 4.7E-23 1.6E-27 247.5 21.3 276 615-933 255-534 (606)
17 2z63_A TOLL-like receptor 4, v 99.9 1.8E-23 6E-28 249.5 17.4 144 541-687 26-175 (570)
18 2z7x_B TOLL-like receptor 1, v 99.9 4.4E-23 1.5E-27 242.8 20.3 125 542-673 20-150 (520)
19 2id5_A Lingo-1, leucine rich r 99.9 9.3E-23 3.2E-27 237.1 21.7 307 551-933 19-331 (477)
20 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.6E-22 5.6E-27 240.0 23.3 142 546-697 34-181 (562)
21 3v47_A TOLL-like receptor 5B a 99.9 3.1E-23 1.1E-27 239.8 16.5 367 541-934 28-407 (455)
22 4fmz_A Internalin; leucine ric 99.9 6.2E-23 2.1E-27 228.0 18.1 301 543-934 44-345 (347)
23 3o6n_A APL1; leucine-rich repe 99.9 1.2E-22 4.1E-27 229.5 20.0 305 564-936 43-353 (390)
24 3j0a_A TOLL-like receptor 5; m 99.9 2.4E-22 8.3E-27 249.6 24.6 280 541-841 22-373 (844)
25 2z81_A CD282 antigen, TOLL-lik 99.9 8.6E-23 2.9E-27 242.2 18.6 151 541-693 24-180 (549)
26 2z7x_B TOLL-like receptor 1, v 99.9 4.5E-22 1.6E-26 234.1 24.1 142 546-697 3-150 (520)
27 4fmz_A Internalin; leucine ric 99.9 1.5E-22 5.3E-27 224.8 18.7 306 562-964 40-346 (347)
28 3oja_B Anopheles plasmodium-re 99.9 1.9E-22 6.4E-27 240.7 19.8 306 564-936 49-359 (597)
29 3bz5_A Internalin-J, INLJ; leu 99.9 1.1E-21 3.7E-26 224.9 23.9 308 562-934 38-351 (457)
30 2z63_A TOLL-like receptor 4, v 99.9 1.1E-22 3.8E-27 242.5 16.0 128 541-671 50-187 (570)
31 2z81_A CD282 antigen, TOLL-lik 99.9 4.8E-22 1.6E-26 235.8 21.3 386 553-964 15-510 (549)
32 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 4.1E-22 1.4E-26 236.5 19.6 126 541-673 50-181 (562)
33 1o6v_A Internalin A; bacterial 99.9 7E-22 2.4E-26 228.6 21.0 320 541-918 66-394 (466)
34 3j0a_A TOLL-like receptor 5; m 99.9 3.1E-21 1.1E-25 239.6 25.8 275 541-840 46-391 (844)
35 1ziw_A TOLL-like receptor 3; i 99.9 2E-21 7E-26 236.6 22.6 263 549-840 10-306 (680)
36 4fcg_A Uncharacterized protein 99.9 7.1E-22 2.4E-26 216.6 16.6 230 591-932 80-311 (328)
37 3v47_A TOLL-like receptor 5B a 99.9 9.3E-22 3.2E-26 227.4 17.4 332 541-915 52-412 (455)
38 3bz5_A Internalin-J, INLJ; leu 99.9 6.6E-21 2.2E-25 218.5 21.6 298 588-966 38-354 (457)
39 3o6n_A APL1; leucine-rich repe 99.9 2.1E-21 7.1E-26 219.3 15.8 304 541-910 43-351 (390)
40 2id5_A Lingo-1, leucine rich r 99.9 7.2E-21 2.5E-25 221.2 19.7 297 592-964 32-333 (477)
41 3oja_B Anopheles plasmodium-re 99.8 2.9E-21 1E-25 230.4 14.5 303 542-910 50-357 (597)
42 2ft3_A Biglycan; proteoglycan, 99.8 8.3E-21 2.8E-25 209.2 17.0 289 545-933 35-331 (332)
43 1xku_A Decorin; proteoglycan, 99.8 2.5E-20 8.4E-25 205.3 17.2 97 593-693 53-153 (330)
44 4fcg_A Uncharacterized protein 99.8 1.1E-20 3.6E-25 207.3 11.3 201 588-840 100-311 (328)
45 1ogq_A PGIP-2, polygalacturona 99.8 8.3E-21 2.8E-25 206.8 9.2 247 543-843 50-304 (313)
46 1ogq_A PGIP-2, polygalacturona 99.8 6.7E-21 2.3E-25 207.6 6.9 249 566-936 50-305 (313)
47 4g8a_A TOLL-like receptor 4; l 99.8 1.2E-19 4.2E-24 219.3 18.6 147 541-690 50-202 (635)
48 1xku_A Decorin; proteoglycan, 99.8 3.4E-19 1.1E-23 196.2 18.8 289 591-961 30-329 (330)
49 2ft3_A Biglycan; proteoglycan, 99.8 4E-19 1.4E-23 195.7 16.9 285 594-961 35-330 (332)
50 1jl5_A Outer protein YOPM; leu 99.8 5.8E-19 2E-23 202.1 17.2 245 542-841 10-268 (454)
51 4g8a_A TOLL-like receptor 4; l 99.8 2.5E-18 8.5E-23 207.8 21.1 139 555-698 43-186 (635)
52 1jl5_A Outer protein YOPM; leu 99.8 8.1E-18 2.8E-22 192.6 22.7 133 542-694 90-224 (454)
53 2z80_A TOLL-like receptor 2, v 99.8 4.9E-19 1.7E-23 196.8 11.7 269 597-935 37-314 (353)
54 2z66_A Variable lymphocyte rec 99.8 2.1E-18 7.3E-23 187.6 13.2 92 597-692 13-108 (306)
55 2z66_A Variable lymphocyte rec 99.8 1.6E-18 5.4E-23 188.6 11.3 240 548-841 12-259 (306)
56 3zyi_A Leucine-rich repeat-con 99.8 4.6E-18 1.6E-22 195.7 15.4 239 546-841 57-301 (452)
57 3zyj_A Leucine-rich repeat-con 99.7 5.3E-18 1.8E-22 194.4 15.4 239 546-841 46-290 (440)
58 3g06_A SSPH2 (leucine-rich rep 99.7 1.3E-17 4.6E-22 196.5 19.1 256 544-935 41-297 (622)
59 2z80_A TOLL-like receptor 2, v 99.7 5.5E-18 1.9E-22 188.3 13.1 263 551-841 39-312 (353)
60 3zyi_A Leucine-rich repeat-con 99.7 2.9E-17 1E-21 189.0 19.3 93 597-693 60-155 (452)
61 3zyj_A Leucine-rich repeat-con 99.7 4.8E-17 1.6E-21 186.5 20.0 93 597-693 49-144 (440)
62 3g06_A SSPH2 (leucine-rich rep 99.7 9.5E-17 3.2E-21 189.3 21.5 259 592-966 40-299 (622)
63 1z7x_W Ribonuclease inhibitor; 99.7 4.3E-20 1.5E-24 213.8 -9.3 358 543-934 3-410 (461)
64 3ogk_B Coronatine-insensitive 99.7 2.6E-18 8.9E-23 205.7 2.3 62 869-933 461-524 (592)
65 3o53_A Protein LRIM1, AGAP0063 99.7 1.9E-18 6.6E-23 188.6 1.1 262 567-936 11-276 (317)
66 1ozn_A Reticulon 4 receptor; N 99.7 5.4E-16 1.9E-20 166.5 19.0 216 597-934 17-237 (285)
67 3o53_A Protein LRIM1, AGAP0063 99.7 4.4E-17 1.5E-21 177.8 9.8 217 562-841 30-248 (317)
68 1ozn_A Reticulon 4 receptor; N 99.7 6.7E-17 2.3E-21 173.7 9.8 63 779-841 173-236 (285)
69 3ogk_B Coronatine-insensitive 99.7 7.3E-18 2.5E-22 201.8 2.4 101 568-669 140-251 (592)
70 1wwl_A Monocyte differentiatio 99.7 3.4E-17 1.2E-21 178.3 7.4 105 780-934 198-308 (312)
71 3oja_A Leucine-rich immune mol 99.7 6.4E-17 2.2E-21 187.0 10.1 129 779-930 140-270 (487)
72 1z7x_W Ribonuclease inhibitor; 99.7 1.4E-19 4.9E-24 209.4 -13.8 369 566-966 3-413 (461)
73 3oja_A Leucine-rich immune mol 99.7 1.3E-16 4.4E-21 184.5 10.5 213 566-841 34-248 (487)
74 1wwl_A Monocyte differentiatio 99.7 3.7E-17 1.3E-21 178.0 4.9 246 564-841 41-307 (312)
75 3qfl_A MLA10; coiled-coil, (CC 99.7 1.2E-16 4E-21 142.5 7.1 80 9-88 2-83 (115)
76 2xwt_C Thyrotropin receptor; s 99.6 2.6E-15 8.9E-20 156.5 17.4 206 603-934 23-238 (239)
77 1h6u_A Internalin H; cell adhe 99.6 1.2E-15 4E-20 165.5 13.5 193 590-846 39-232 (308)
78 1p9a_G Platelet glycoprotein I 99.6 6.6E-15 2.3E-19 157.9 18.1 200 610-934 6-207 (290)
79 1h6u_A Internalin H; cell adhe 99.6 2.4E-15 8.3E-20 163.0 13.7 91 597-693 25-115 (308)
80 2z62_A TOLL-like receptor 4, v 99.6 5.5E-15 1.9E-19 157.9 15.7 93 596-692 12-107 (276)
81 2ast_B S-phase kinase-associat 99.6 9.7E-17 3.3E-21 177.1 1.9 196 568-841 49-258 (336)
82 2p1m_B Transport inhibitor res 99.6 6.1E-17 2.1E-21 193.9 -0.5 148 543-690 105-270 (594)
83 1w5s_A Origin recognition comp 99.6 2E-14 7E-19 163.3 20.4 300 177-495 20-372 (412)
84 2z62_A TOLL-like receptor 4, v 99.6 3.4E-15 1.2E-19 159.4 13.1 124 566-693 28-157 (276)
85 2o6q_A Variable lymphocyte rec 99.6 8.3E-15 2.8E-19 155.8 15.4 190 597-841 22-216 (270)
86 1p9a_G Platelet glycoprotein I 99.6 8E-15 2.7E-19 157.2 14.0 63 778-841 143-206 (290)
87 2qen_A Walker-type ATPase; unk 99.6 7.7E-14 2.6E-18 154.7 21.5 296 175-515 8-348 (350)
88 2o6q_A Variable lymphocyte rec 99.6 6.1E-14 2.1E-18 149.0 19.3 198 614-934 16-217 (270)
89 4ay9_X Follicle-stimulating ho 99.6 1.2E-14 4.2E-19 160.7 13.3 234 597-907 15-255 (350)
90 3rfs_A Internalin B, repeat mo 99.5 1.8E-14 6E-19 153.3 13.0 79 610-692 37-116 (272)
91 2xwt_C Thyrotropin receptor; s 99.5 9.5E-15 3.3E-19 152.3 10.5 56 783-841 179-237 (239)
92 2ast_B S-phase kinase-associat 99.5 4.2E-16 1.4E-20 171.9 -0.8 222 593-908 48-282 (336)
93 2fna_A Conserved hypothetical 99.5 7.9E-13 2.7E-17 147.0 24.5 294 176-515 10-356 (357)
94 2ca6_A RAN GTPase-activating p 99.5 4.9E-16 1.7E-20 174.9 -3.2 244 556-841 22-314 (386)
95 3rfs_A Internalin B, repeat mo 99.5 4.1E-14 1.4E-18 150.5 11.3 57 779-841 177-233 (272)
96 2p1m_B Transport inhibitor res 99.5 1.1E-15 3.8E-20 182.9 -1.6 131 563-694 102-244 (594)
97 4glp_A Monocyte differentiatio 99.5 1.1E-13 3.8E-18 150.3 14.2 224 565-841 63-305 (310)
98 1h6t_A Internalin B; cell adhe 99.5 9.5E-14 3.2E-18 149.0 11.7 60 779-841 152-211 (291)
99 4ay9_X Follicle-stimulating ho 99.5 5.2E-13 1.8E-17 147.7 17.4 246 610-931 6-255 (350)
100 4glp_A Monocyte differentiatio 99.5 1E-13 3.5E-18 150.6 11.5 201 612-934 89-306 (310)
101 2ca6_A RAN GTPase-activating p 99.5 1.8E-15 6.1E-20 170.2 -3.0 212 587-841 27-285 (386)
102 1m9s_A Internalin B; cell inva 99.5 1.7E-13 5.7E-18 161.5 12.4 77 591-671 42-119 (605)
103 1xeu_A Internalin C; cellular 99.4 1.3E-13 4.4E-18 145.5 9.7 166 590-841 17-183 (263)
104 3m19_A Variable lymphocyte rec 99.4 7.6E-13 2.6E-17 138.8 14.7 169 594-841 16-190 (251)
105 1m9s_A Internalin B; cell inva 99.4 1.1E-13 3.6E-18 163.1 9.1 182 597-841 27-208 (605)
106 1h6t_A Internalin B; cell adhe 99.4 2.9E-13 9.8E-18 145.3 10.5 160 597-841 30-189 (291)
107 4ezg_A Putative uncharacterize 99.4 6.1E-13 2.1E-17 133.8 10.0 153 610-841 40-192 (197)
108 2qby_B CDC6 homolog 3, cell di 99.4 5.7E-11 2E-15 133.3 25.5 297 178-496 19-341 (384)
109 3cvr_A Invasion plasmid antige 99.4 1.5E-12 5.1E-17 151.5 12.3 173 593-841 60-241 (571)
110 3goz_A Leucine-rich repeat-con 99.4 1.8E-14 6.3E-19 160.2 -4.2 89 582-671 12-119 (362)
111 2v1u_A Cell division control p 99.3 4.5E-11 1.5E-15 134.4 22.9 295 178-495 18-352 (387)
112 3cvr_A Invasion plasmid antige 99.3 1.5E-12 5E-17 151.6 10.5 41 783-824 207-247 (571)
113 1fnn_A CDC6P, cell division co 99.3 1.6E-10 5.4E-15 129.9 25.9 321 178-519 16-384 (389)
114 3goz_A Leucine-rich repeat-con 99.3 2.5E-13 8.7E-18 151.0 1.8 233 562-841 18-295 (362)
115 4ezg_A Putative uncharacterize 99.3 4.1E-12 1.4E-16 127.7 10.2 148 541-696 42-192 (197)
116 3m19_A Variable lymphocyte rec 99.3 4.7E-12 1.6E-16 132.8 10.7 152 542-697 34-191 (251)
117 2v9t_B SLIT homolog 2 protein 99.3 1.6E-11 5.4E-16 125.6 14.4 78 597-678 17-96 (220)
118 3e6j_A Variable lymphocyte rec 99.3 2.1E-11 7.3E-16 125.6 14.8 144 596-841 24-170 (229)
119 2o6s_A Variable lymphocyte rec 99.3 3.2E-12 1.1E-16 129.8 7.8 103 566-671 28-134 (208)
120 1dce_A Protein (RAB geranylger 99.3 1.8E-13 6.1E-18 160.2 -1.8 60 778-837 503-567 (567)
121 4b8c_D Glucose-repressible alc 99.3 4.8E-12 1.6E-16 153.1 9.5 155 542-698 172-329 (727)
122 1dce_A Protein (RAB geranylger 99.3 5.5E-14 1.9E-18 164.6 -8.0 64 776-841 479-544 (567)
123 3e6j_A Variable lymphocyte rec 99.3 8E-12 2.7E-16 128.8 9.1 144 548-697 24-171 (229)
124 2v70_A SLIT-2, SLIT homolog 2 99.3 3.2E-11 1.1E-15 123.3 13.2 72 597-671 17-91 (220)
125 2v9t_B SLIT homolog 2 protein 99.2 1.1E-11 3.8E-16 126.8 8.8 144 548-697 16-164 (220)
126 2qby_A CDC6 homolog 1, cell di 99.2 3.7E-10 1.3E-14 126.7 22.0 296 177-495 18-349 (386)
127 2o6s_A Variable lymphocyte rec 99.2 1.8E-11 6.3E-16 124.2 9.6 162 596-842 12-177 (208)
128 2ell_A Acidic leucine-rich nuc 99.2 1.1E-11 3.8E-16 121.0 7.7 128 566-697 24-159 (168)
129 2ell_A Acidic leucine-rich nuc 99.2 1.4E-11 5E-16 120.2 8.1 134 541-680 22-165 (168)
130 2v70_A SLIT-2, SLIT homolog 2 99.2 2.5E-11 8.6E-16 124.1 9.4 146 546-697 14-165 (220)
131 2xot_A Amphoterin-induced prot 99.2 1.6E-11 5.4E-16 136.3 8.5 93 597-693 24-120 (361)
132 4b8c_D Glucose-repressible alc 99.2 2E-12 6.8E-17 156.4 1.2 126 566-695 173-303 (727)
133 1njg_A DNA polymerase III subu 99.2 1.6E-10 5.4E-15 120.7 15.6 198 179-393 23-231 (250)
134 2je0_A Acidic leucine-rich nuc 99.2 9.9E-12 3.4E-16 118.7 5.5 124 565-692 16-147 (149)
135 1a9n_A U2A', U2A'; complex (nu 99.2 1.8E-11 6.3E-16 120.4 7.3 130 561-696 14-151 (176)
136 1xeu_A Internalin C; cellular 99.2 7.9E-11 2.7E-15 124.0 10.8 145 542-698 40-185 (263)
137 2je0_A Acidic leucine-rich nuc 99.1 3.2E-11 1.1E-15 115.1 5.9 124 541-669 15-148 (149)
138 2chg_A Replication factor C sm 99.1 1.4E-09 4.9E-14 111.5 16.3 185 179-390 17-204 (226)
139 2xot_A Amphoterin-induced prot 99.1 7.9E-11 2.7E-15 130.6 6.2 142 549-696 24-174 (361)
140 1a9n_A U2A', U2A'; complex (nu 99.0 1.7E-10 5.7E-15 113.5 6.4 126 541-672 17-151 (176)
141 3sb4_A Hypothetical leucine ri 99.0 7.3E-10 2.5E-14 121.1 11.7 287 565-928 24-327 (329)
142 1w8a_A SLIT protein; signaling 99.0 4.9E-10 1.7E-14 111.8 8.0 98 597-695 35-136 (192)
143 1w8a_A SLIT protein; signaling 99.0 8.3E-10 2.8E-14 110.1 7.8 123 546-672 11-137 (192)
144 2wfh_A SLIT homolog 2 protein 98.9 1.2E-09 4.2E-14 108.8 8.3 100 593-694 32-135 (193)
145 2o6r_A Variable lymphocyte rec 98.9 1.6E-09 5.5E-14 106.5 8.9 119 548-671 12-134 (177)
146 2wfh_A SLIT homolog 2 protein 98.9 1.9E-09 6.5E-14 107.5 9.5 120 547-672 14-137 (193)
147 1ds9_A Outer arm dynein; leuci 98.9 2E-11 6.9E-16 122.7 -6.4 112 555-672 37-151 (198)
148 1sxj_B Activator 1 37 kDa subu 98.9 9.8E-09 3.4E-13 111.9 14.1 186 179-391 21-211 (323)
149 1hqc_A RUVB; extended AAA-ATPa 98.9 3.9E-09 1.3E-13 115.2 9.1 268 178-493 11-324 (324)
150 2r9u_A Variable lymphocyte rec 98.9 4E-09 1.4E-13 103.1 8.2 96 597-696 18-116 (174)
151 3g39_A Variable lymphocyte rec 98.8 5.6E-09 1.9E-13 101.7 8.2 97 597-697 15-114 (170)
152 3sb4_A Hypothetical leucine ri 98.8 1.4E-08 4.8E-13 110.8 11.0 288 542-905 24-328 (329)
153 1ds9_A Outer arm dynein; leuci 98.8 1.9E-10 6.3E-15 115.6 -4.0 104 587-694 43-149 (198)
154 2r9u_A Variable lymphocyte rec 98.8 5.7E-09 1.9E-13 102.0 6.4 87 592-680 33-123 (174)
155 2o6r_A Variable lymphocyte rec 98.8 1.3E-08 4.5E-13 100.0 8.5 123 568-697 9-136 (177)
156 3te6_A Regulatory protein SIR3 98.7 2E-07 6.8E-12 98.9 16.1 208 180-393 21-283 (318)
157 3g39_A Variable lymphocyte rec 98.7 2.6E-08 8.9E-13 96.9 7.2 80 592-672 30-113 (170)
158 1iqp_A RFCS; clamp loader, ext 98.7 7.9E-08 2.7E-12 104.9 11.8 183 179-392 25-214 (327)
159 4fdw_A Leucine rich hypothetic 98.6 1.8E-06 6.1E-11 96.3 21.2 126 783-933 248-381 (401)
160 1jr3_A DNA polymerase III subu 98.6 4.7E-07 1.6E-11 100.7 14.4 195 179-390 16-221 (373)
161 2ifg_A High affinity nerve gro 98.5 1.1E-07 3.6E-12 104.8 8.3 101 595-698 12-116 (347)
162 2chq_A Replication factor C sm 98.4 8.2E-07 2.8E-11 96.3 12.2 182 179-390 17-204 (319)
163 1jbk_A CLPB protein; beta barr 98.4 2E-06 6.8E-11 85.4 12.2 151 179-352 22-194 (195)
164 4fdw_A Leucine rich hypothetic 98.3 8.8E-06 3E-10 90.6 17.8 256 566-908 113-380 (401)
165 3bos_A Putative DNA replicatio 98.3 1.3E-06 4.6E-11 90.3 9.0 173 179-389 28-216 (242)
166 4fs7_A Uncharacterized protein 98.2 2E-05 7E-10 88.0 17.2 305 560-931 65-375 (394)
167 2ifg_A High affinity nerve gro 98.2 1.7E-06 5.8E-11 95.1 7.9 84 588-672 27-114 (347)
168 2z4s_A Chromosomal replication 98.2 2.1E-05 7.2E-10 88.6 16.2 160 207-387 130-303 (440)
169 1sxj_E Activator 1 40 kDa subu 98.2 8.2E-06 2.8E-10 89.8 12.3 196 179-390 14-237 (354)
170 3pfi_A Holliday junction ATP-d 98.2 4E-05 1.4E-09 83.6 17.5 178 178-389 28-226 (338)
171 1sxj_D Activator 1 41 kDa subu 98.1 1.2E-05 4.2E-10 88.3 13.1 195 179-390 37-235 (353)
172 3h4m_A Proteasome-activating n 98.1 3.8E-05 1.3E-09 81.5 15.9 186 177-387 15-228 (285)
173 2ra8_A Uncharacterized protein 98.1 2.3E-07 7.8E-12 101.5 -1.8 143 778-934 167-319 (362)
174 3un9_A NLR family member X1; l 98.1 1E-06 3.6E-11 97.2 3.0 35 614-648 101-137 (372)
175 3uk6_A RUVB-like 2; hexameric 98.0 6E-05 2E-09 83.3 16.5 195 178-388 43-301 (368)
176 1sxj_A Activator 1 95 kDa subu 98.0 3.5E-05 1.2E-09 88.9 14.5 199 178-390 38-253 (516)
177 3pvs_A Replication-associated 98.0 9.9E-05 3.4E-09 82.9 17.7 178 179-389 26-214 (447)
178 2ra8_A Uncharacterized protein 98.0 2.6E-06 9E-11 93.1 4.5 66 743-819 250-319 (362)
179 3u61_B DNA polymerase accessor 98.0 3.1E-05 1.1E-09 83.9 12.6 179 178-387 25-213 (324)
180 1a5t_A Delta prime, HOLB; zinc 98.0 7.4E-05 2.5E-09 81.1 15.4 173 184-389 7-204 (334)
181 3un9_A NLR family member X1; l 98.0 1.1E-06 3.8E-11 97.0 0.7 151 543-696 72-250 (372)
182 2qz4_A Paraplegin; AAA+, SPG7, 98.0 7.4E-05 2.5E-09 78.1 14.3 184 178-384 5-215 (262)
183 2p65_A Hypothetical protein PF 98.0 1.6E-05 5.4E-10 78.3 8.5 45 179-230 22-66 (187)
184 1l8q_A Chromosomal replication 97.9 0.00011 3.8E-09 79.5 15.4 170 186-384 21-202 (324)
185 3syl_A Protein CBBX; photosynt 97.9 5.3E-05 1.8E-09 81.5 12.7 160 180-357 32-218 (309)
186 1d2n_A N-ethylmaleimide-sensit 97.9 0.00024 8.1E-09 74.6 17.2 171 179-381 33-228 (272)
187 3ec2_A DNA replication protein 97.8 1.6E-05 5.6E-10 77.8 6.2 121 184-325 19-142 (180)
188 3e4g_A ATP synthase subunit S, 97.8 6.5E-06 2.2E-10 78.7 2.0 39 898-937 114-154 (176)
189 4fs7_A Uncharacterized protein 97.8 0.0007 2.4E-08 75.4 18.8 306 584-959 63-374 (394)
190 2w58_A DNAI, primosome compone 97.8 4.9E-05 1.7E-09 75.9 8.3 119 186-325 36-158 (202)
191 3eie_A Vacuolar protein sortin 97.7 0.00098 3.4E-08 71.8 18.9 187 178-389 17-227 (322)
192 3n70_A Transport activator; si 97.7 3.2E-05 1.1E-09 72.5 6.2 113 180-325 2-115 (145)
193 1sxj_C Activator 1 40 kDa subu 97.7 0.00017 5.9E-09 78.5 12.8 174 179-386 25-208 (340)
194 3d8b_A Fidgetin-like protein 1 97.7 0.00042 1.4E-08 75.8 15.3 188 178-390 83-295 (357)
195 2qp9_X Vacuolar protein sortin 97.6 0.00063 2.1E-08 74.3 15.5 187 178-390 50-261 (355)
196 3b9p_A CG5977-PA, isoform A; A 97.6 0.0015 5.3E-08 69.4 18.3 185 178-389 20-232 (297)
197 1xwi_A SKD1 protein; VPS4B, AA 97.6 0.0017 5.6E-08 69.8 18.0 191 177-390 10-223 (322)
198 3cf0_A Transitional endoplasmi 97.6 0.00086 2.9E-08 71.4 15.1 182 178-384 14-222 (301)
199 1io0_A Tropomodulin; LRR prote 97.6 5.2E-05 1.8E-09 74.4 5.0 110 561-671 31-161 (185)
200 3e4g_A ATP synthase subunit S, 97.5 7.6E-05 2.6E-09 71.3 5.7 62 614-675 61-128 (176)
201 3rw6_A Nuclear RNA export fact 97.5 3.4E-05 1.2E-09 79.7 3.3 81 611-693 167-259 (267)
202 2gno_A DNA polymerase III, gam 97.5 0.00032 1.1E-08 74.4 10.8 148 183-356 1-152 (305)
203 3rw6_A Nuclear RNA export fact 97.5 4.4E-05 1.5E-09 78.9 3.7 105 563-668 138-258 (267)
204 3vfd_A Spastin; ATPase, microt 97.4 0.0028 9.6E-08 70.2 17.1 189 177-389 113-325 (389)
205 1io0_A Tropomodulin; LRR prote 97.4 5.7E-05 1.9E-09 74.1 2.7 113 580-694 24-160 (185)
206 1qvr_A CLPB protein; coiled co 97.4 0.00062 2.1E-08 83.7 12.5 154 179-355 170-344 (854)
207 2zan_A Vacuolar protein sortin 97.4 0.0019 6.5E-08 72.7 15.5 189 178-389 133-344 (444)
208 4fcw_A Chaperone protein CLPB; 97.4 0.00041 1.4E-08 74.5 9.4 137 180-325 18-169 (311)
209 3co5_A Putative two-component 97.3 0.00011 3.9E-09 68.5 3.9 111 179-325 4-115 (143)
210 2kjq_A DNAA-related protein; s 97.3 0.00013 4.6E-09 68.4 4.4 86 208-325 37-124 (149)
211 3hu3_A Transitional endoplasmi 97.3 0.0016 5.5E-08 73.8 13.8 184 179-387 204-412 (489)
212 4gt6_A Cell surface protein; l 97.3 0.0022 7.6E-08 71.3 14.8 107 803-933 261-368 (394)
213 3pxg_A Negative regulator of g 97.3 0.0013 4.5E-08 74.6 13.0 145 179-356 180-338 (468)
214 3pxi_A Negative regulator of g 97.2 0.00037 1.3E-08 84.7 7.7 157 179-356 491-675 (758)
215 4gt6_A Cell surface protein; l 97.2 0.0036 1.2E-07 69.5 14.8 126 778-931 260-387 (394)
216 2bjv_A PSP operon transcriptio 97.2 0.00057 2E-08 71.4 7.8 47 179-230 6-52 (265)
217 1in4_A RUVB, holliday junction 97.2 0.0046 1.6E-07 66.8 15.0 177 179-389 25-222 (334)
218 1ofh_A ATP-dependent HSL prote 97.2 0.002 6.8E-08 69.0 12.1 154 179-354 15-213 (310)
219 1ojl_A Transcriptional regulat 97.1 0.00087 3E-08 71.3 7.9 46 179-229 2-47 (304)
220 4b4t_J 26S protease regulatory 97.1 0.013 4.4E-07 63.6 16.9 182 177-383 146-354 (405)
221 1lv7_A FTSH; alpha/beta domain 97.1 0.0066 2.3E-07 62.8 14.4 186 177-387 10-222 (257)
222 4b4t_L 26S protease subunit RP 97.0 0.015 5.1E-07 64.2 17.2 183 176-383 178-387 (437)
223 4b4t_K 26S protease regulatory 97.0 0.011 3.7E-07 65.3 16.0 182 176-382 169-378 (428)
224 2c9o_A RUVB-like 1; hexameric 97.0 0.0019 6.6E-08 73.1 10.4 96 289-389 298-409 (456)
225 1r6b_X CLPA protein; AAA+, N-t 96.9 0.006 2E-07 74.1 14.7 157 179-356 186-362 (758)
226 2ce7_A Cell division protein F 96.7 0.013 4.6E-07 65.7 14.2 181 178-383 15-221 (476)
227 3pxi_A Negative regulator of g 96.7 0.0078 2.7E-07 73.0 13.2 147 179-356 180-338 (758)
228 2qgz_A Helicase loader, putati 96.7 0.0011 3.9E-08 70.4 5.1 120 184-325 133-257 (308)
229 2r44_A Uncharacterized protein 96.7 0.0031 1.1E-07 68.2 8.5 153 179-358 27-200 (331)
230 4h09_A Hypothetical leucine ri 96.7 0.018 6.1E-07 63.5 14.8 13 562-574 65-77 (379)
231 4b4t_H 26S protease regulatory 96.6 0.019 6.4E-07 63.3 14.2 180 179-383 209-415 (467)
232 1r6b_X CLPA protein; AAA+, N-t 96.6 0.0037 1.3E-07 75.9 9.4 134 179-325 458-607 (758)
233 2r62_A Cell division protease 96.4 0.00095 3.2E-08 69.8 2.3 159 178-356 10-196 (268)
234 4b4t_I 26S protease regulatory 96.4 0.045 1.5E-06 59.7 15.1 180 177-382 180-387 (437)
235 2vhj_A Ntpase P4, P4; non- hyd 96.4 0.0012 4.3E-08 69.0 2.6 68 207-296 123-192 (331)
236 4b4t_M 26S protease regulatory 96.4 0.015 5E-07 64.2 11.2 180 177-382 179-386 (434)
237 1qvr_A CLPB protein; coiled co 96.3 0.0068 2.3E-07 74.5 9.4 137 179-325 558-710 (854)
238 2cvh_A DNA repair and recombin 96.3 0.014 4.9E-07 58.5 9.9 84 207-296 20-115 (220)
239 3m6a_A ATP-dependent protease 96.2 0.018 6.2E-07 66.4 11.7 162 179-356 81-266 (543)
240 1g5t_A COB(I)alamin adenosyltr 96.2 0.0079 2.7E-07 58.2 7.2 117 208-326 29-163 (196)
241 3t15_A Ribulose bisphosphate c 95.9 0.026 8.9E-07 59.5 10.3 25 206-230 35-59 (293)
242 1jr3_D DNA polymerase III, del 95.9 0.094 3.2E-06 56.7 15.0 157 207-389 18-184 (343)
243 2b8t_A Thymidine kinase; deoxy 95.9 0.0062 2.1E-07 60.9 4.7 113 207-327 12-127 (223)
244 4h09_A Hypothetical leucine ri 95.9 0.08 2.7E-06 58.1 14.4 57 869-930 284-341 (379)
245 1um8_A ATP-dependent CLP prote 95.7 0.042 1.4E-06 60.4 11.3 50 180-229 22-94 (376)
246 3cf2_A TER ATPase, transitiona 95.6 0.072 2.5E-06 63.5 13.3 181 178-383 203-407 (806)
247 2w0m_A SSO2452; RECA, SSPF, un 95.5 0.027 9.3E-07 57.0 8.3 114 208-326 24-168 (235)
248 1ypw_A Transitional endoplasmi 95.5 0.023 7.9E-07 68.8 8.9 159 178-356 203-385 (806)
249 1iy2_A ATP-dependent metallopr 95.5 0.14 4.9E-06 53.3 14.0 181 177-383 38-245 (278)
250 1n0w_A DNA repair protein RAD5 95.4 0.035 1.2E-06 56.6 8.8 88 208-296 25-129 (243)
251 3hr8_A Protein RECA; alpha and 95.4 0.037 1.3E-06 59.5 9.0 84 206-296 60-149 (356)
252 1v5w_A DMC1, meiotic recombina 95.2 0.061 2.1E-06 58.0 10.2 57 206-263 121-181 (343)
253 2i1q_A DNA repair and recombin 95.2 0.044 1.5E-06 58.7 8.7 57 206-263 97-167 (322)
254 2x8a_A Nuclear valosin-contain 95.1 0.15 5.3E-06 52.8 12.5 126 210-356 47-191 (274)
255 1xp8_A RECA protein, recombina 95.1 0.061 2.1E-06 58.2 9.6 83 207-296 74-162 (366)
256 2z43_A DNA repair and recombin 95.1 0.058 2E-06 57.7 9.3 56 207-263 107-166 (324)
257 2px0_A Flagellar biosynthesis 95.0 0.051 1.8E-06 57.1 8.6 85 207-294 105-190 (296)
258 2zr9_A Protein RECA, recombina 94.9 0.063 2.1E-06 57.9 9.1 83 207-296 61-149 (349)
259 2dhr_A FTSH; AAA+ protein, hex 94.9 0.22 7.4E-06 56.2 13.9 178 177-383 29-236 (499)
260 1rz3_A Hypothetical protein rb 94.9 0.025 8.6E-07 55.8 5.6 43 183-229 2-44 (201)
261 3io5_A Recombination and repai 94.9 0.087 3E-06 54.9 9.5 84 209-297 30-122 (333)
262 2pze_A Cystic fibrosis transme 94.8 0.2 6.9E-06 50.3 12.0 23 208-230 35-57 (229)
263 2cbz_A Multidrug resistance-as 94.7 0.11 3.6E-06 52.7 9.6 23 208-230 32-54 (237)
264 3rfe_A Platelet glycoprotein I 94.6 0.036 1.2E-06 50.1 5.2 51 596-648 13-66 (130)
265 1mv5_A LMRA, multidrug resista 94.4 0.23 7.9E-06 50.4 11.4 23 207-229 28-50 (243)
266 1u94_A RECA protein, recombina 94.4 0.086 2.9E-06 56.8 8.4 83 207-296 63-151 (356)
267 1cr0_A DNA primase/helicase; R 94.3 0.089 3.1E-06 55.5 8.5 38 207-245 35-72 (296)
268 3tqc_A Pantothenate kinase; bi 94.1 0.12 4E-06 54.7 8.7 45 182-229 70-114 (321)
269 2pjz_A Hypothetical protein ST 93.8 0.25 8.6E-06 50.7 10.3 21 209-229 32-52 (263)
270 4a74_A DNA repair and recombin 93.6 0.21 7.3E-06 50.1 9.4 46 206-251 24-73 (231)
271 1vma_A Cell division protein F 93.5 0.34 1.2E-05 50.9 10.8 107 186-295 82-195 (306)
272 1pzn_A RAD51, DNA repair and r 93.5 0.23 7.9E-06 53.5 9.7 90 206-296 130-241 (349)
273 3bh0_A DNAB-like replicative h 93.4 0.25 8.4E-06 52.5 9.8 52 207-262 68-119 (315)
274 2orw_A Thymidine kinase; TMTK, 93.4 0.015 5E-07 56.5 0.2 107 208-325 4-112 (184)
275 1zp6_A Hypothetical protein AT 93.4 0.039 1.3E-06 53.8 3.3 24 207-230 9-32 (191)
276 3ice_A Transcription terminati 93.3 0.048 1.6E-06 58.3 3.9 82 208-295 175-270 (422)
277 1qhx_A CPT, protein (chloramph 93.3 0.034 1.2E-06 53.5 2.7 22 208-229 4-25 (178)
278 3lw7_A Adenylate kinase relate 93.3 0.035 1.2E-06 53.2 2.7 19 209-227 3-21 (179)
279 3c8u_A Fructokinase; YP_612366 93.2 0.06 2E-06 53.4 4.3 38 187-229 7-44 (208)
280 3nbx_X ATPase RAVA; AAA+ ATPas 93.2 0.059 2E-06 60.9 4.6 42 180-230 23-64 (500)
281 3kb2_A SPBC2 prophage-derived 93.0 0.041 1.4E-06 52.6 2.7 22 208-229 2-23 (173)
282 3rfe_A Platelet glycoprotein I 93.0 0.1 3.6E-06 47.1 5.2 53 617-672 11-66 (130)
283 1ly1_A Polynucleotide kinase; 92.9 0.047 1.6E-06 52.6 2.9 22 208-229 3-24 (181)
284 3vaa_A Shikimate kinase, SK; s 92.8 0.041 1.4E-06 54.2 2.3 23 207-229 25-47 (199)
285 1sky_E F1-ATPase, F1-ATP synth 92.8 0.15 5.2E-06 56.4 7.0 86 209-295 153-254 (473)
286 3lda_A DNA repair protein RAD5 92.8 0.21 7E-06 54.7 8.1 56 207-263 178-237 (400)
287 1kgd_A CASK, peripheral plasma 92.7 0.042 1.4E-06 53.1 2.3 23 207-229 5-27 (180)
288 2ga8_A Hypothetical 39.9 kDa p 92.7 0.099 3.4E-06 55.6 5.2 45 182-229 2-46 (359)
289 3fwy_A Light-independent proto 92.7 0.053 1.8E-06 57.5 3.1 39 206-246 47-85 (314)
290 4a1f_A DNAB helicase, replicat 92.7 0.26 8.8E-06 52.5 8.4 53 207-263 46-98 (338)
291 2ffh_A Protein (FFH); SRP54, s 92.6 0.76 2.6E-05 50.5 12.4 25 206-230 97-121 (425)
292 2bbs_A Cystic fibrosis transme 92.6 0.56 1.9E-05 48.9 10.8 23 208-230 65-87 (290)
293 3uie_A Adenylyl-sulfate kinase 92.6 0.057 2E-06 53.2 3.2 25 206-230 24-48 (200)
294 2xxa_A Signal recognition part 92.6 0.57 2E-05 51.8 11.5 43 187-229 78-122 (433)
295 3e70_C DPA, signal recognition 92.5 0.62 2.1E-05 49.4 11.2 25 206-230 128-152 (328)
296 1gvn_B Zeta; postsegregational 92.5 0.1 3.5E-06 54.6 5.1 41 187-229 15-55 (287)
297 1kag_A SKI, shikimate kinase I 92.4 0.045 1.5E-06 52.4 2.1 22 208-229 5-26 (173)
298 3kl4_A SRP54, signal recogniti 92.4 0.51 1.7E-05 52.0 10.6 25 206-230 96-120 (433)
299 1odf_A YGR205W, hypothetical 3 92.4 0.12 3.9E-06 54.1 5.3 81 205-285 29-117 (290)
300 2p5t_B PEZT; postsegregational 92.4 0.11 3.7E-06 53.4 4.9 43 185-229 12-54 (253)
301 3trf_A Shikimate kinase, SK; a 92.3 0.052 1.8E-06 52.6 2.3 23 207-229 5-27 (185)
302 1nks_A Adenylate kinase; therm 92.3 0.066 2.3E-06 52.2 3.1 22 208-229 2-23 (194)
303 3dm5_A SRP54, signal recogniti 92.2 1 3.4E-05 49.7 12.7 24 206-229 99-122 (443)
304 1knq_A Gluconate kinase; ALFA/ 92.2 0.064 2.2E-06 51.4 2.9 23 207-229 8-30 (175)
305 2rhm_A Putative kinase; P-loop 92.2 0.073 2.5E-06 51.9 3.2 23 207-229 5-27 (193)
306 4gp7_A Metallophosphoesterase; 92.2 0.068 2.3E-06 51.1 2.9 23 207-229 9-31 (171)
307 2bdt_A BH3686; alpha-beta prot 92.1 0.074 2.5E-06 51.8 3.1 22 208-229 3-24 (189)
308 3hws_A ATP-dependent CLP prote 92.0 0.096 3.3E-06 57.1 4.3 50 180-229 16-73 (363)
309 1ixz_A ATP-dependent metallopr 92.0 0.091 3.1E-06 54.0 3.9 158 178-356 15-199 (254)
310 1fx0_B ATP synthase beta chain 92.0 0.35 1.2E-05 53.5 8.6 53 208-261 166-219 (498)
311 3t61_A Gluconokinase; PSI-biol 91.9 0.057 1.9E-06 53.3 2.1 23 207-229 18-40 (202)
312 4eun_A Thermoresistant glucoki 91.9 0.069 2.4E-06 52.6 2.6 23 207-229 29-51 (200)
313 2qt1_A Nicotinamide riboside k 91.8 0.092 3.1E-06 52.0 3.6 24 206-229 20-43 (207)
314 2dr3_A UPF0273 protein PH0284; 91.8 0.29 1E-05 49.7 7.5 38 208-247 24-61 (247)
315 3tr0_A Guanylate kinase, GMP k 91.7 0.078 2.7E-06 52.3 2.8 22 208-229 8-29 (205)
316 1kht_A Adenylate kinase; phosp 91.7 0.074 2.5E-06 51.8 2.6 22 208-229 4-25 (192)
317 3asz_A Uridine kinase; cytidin 91.7 0.086 2.9E-06 52.3 3.1 24 206-229 5-28 (211)
318 1ye8_A Protein THEP1, hypothet 91.6 0.078 2.7E-06 51.0 2.7 22 209-230 2-23 (178)
319 2if2_A Dephospho-COA kinase; a 91.6 0.082 2.8E-06 52.2 2.8 21 209-229 3-23 (204)
320 3a00_A Guanylate kinase, GMP k 91.6 0.062 2.1E-06 52.2 1.9 22 208-229 2-23 (186)
321 2ck3_D ATP synthase subunit be 91.6 0.63 2.1E-05 51.4 10.0 53 208-261 154-207 (482)
322 3tau_A Guanylate kinase, GMP k 91.5 0.074 2.5E-06 52.7 2.5 24 207-230 8-31 (208)
323 1uf9_A TT1252 protein; P-loop, 91.5 0.094 3.2E-06 51.6 3.3 24 206-229 7-30 (203)
324 2ze6_A Isopentenyl transferase 91.5 0.083 2.8E-06 54.2 2.9 22 208-229 2-23 (253)
325 2j37_W Signal recognition part 91.5 1.1 3.7E-05 50.5 12.1 25 205-229 99-123 (504)
326 1zuh_A Shikimate kinase; alpha 91.5 0.072 2.5E-06 50.7 2.2 24 206-229 6-29 (168)
327 1q57_A DNA primase/helicase; d 91.5 0.61 2.1E-05 53.2 10.4 53 207-263 242-295 (503)
328 2jaq_A Deoxyguanosine kinase; 91.4 0.081 2.8E-06 52.2 2.6 21 209-229 2-22 (205)
329 3iij_A Coilin-interacting nucl 91.4 0.062 2.1E-06 51.8 1.7 23 207-229 11-33 (180)
330 1zu4_A FTSY; GTPase, signal re 91.4 0.91 3.1E-05 48.0 10.9 25 205-229 103-127 (320)
331 1pgv_A TMD-1, tropomodulin TMD 91.3 0.17 5.6E-06 49.1 4.6 84 564-647 39-136 (197)
332 1g8p_A Magnesium-chelatase 38 91.3 0.11 3.8E-06 56.2 3.9 45 178-229 23-67 (350)
333 1ukz_A Uridylate kinase; trans 91.3 0.1 3.4E-06 51.5 3.2 24 206-229 14-37 (203)
334 2qor_A Guanylate kinase; phosp 91.3 0.064 2.2E-06 53.0 1.7 23 207-229 12-34 (204)
335 1jjv_A Dephospho-COA kinase; P 91.3 0.1 3.4E-06 51.6 3.1 22 208-229 3-24 (206)
336 2yvu_A Probable adenylyl-sulfa 91.3 0.11 3.7E-06 50.4 3.3 25 206-230 12-36 (186)
337 1xjc_A MOBB protein homolog; s 91.3 0.081 2.8E-06 50.0 2.3 24 206-229 3-26 (169)
338 1via_A Shikimate kinase; struc 91.2 0.076 2.6E-06 50.9 2.1 21 209-229 6-26 (175)
339 2j41_A Guanylate kinase; GMP, 91.1 0.09 3.1E-06 51.9 2.6 24 207-230 6-29 (207)
340 1j8m_F SRP54, signal recogniti 91.1 0.5 1.7E-05 49.4 8.5 87 207-295 98-189 (297)
341 1lvg_A Guanylate kinase, GMP k 91.1 0.07 2.4E-06 52.4 1.7 22 208-229 5-26 (198)
342 1y63_A LMAJ004144AAA protein; 91.0 0.097 3.3E-06 50.7 2.7 23 207-229 10-32 (184)
343 1cke_A CK, MSSA, protein (cyti 91.0 0.095 3.3E-06 52.7 2.7 22 208-229 6-27 (227)
344 1tev_A UMP-CMP kinase; ploop, 91.0 0.1 3.6E-06 50.8 2.9 22 208-229 4-25 (196)
345 3a4m_A L-seryl-tRNA(SEC) kinas 90.9 0.1 3.6E-06 53.7 3.0 23 207-229 4-26 (260)
346 1htw_A HI0065; nucleotide-bind 90.9 0.12 4.2E-06 48.4 3.1 23 207-229 33-55 (158)
347 1uj2_A Uridine-cytidine kinase 90.9 0.11 3.6E-06 53.4 2.9 24 206-229 21-44 (252)
348 3ney_A 55 kDa erythrocyte memb 90.8 0.095 3.2E-06 51.0 2.3 24 206-229 18-41 (197)
349 3cm0_A Adenylate kinase; ATP-b 90.8 0.11 3.8E-06 50.3 2.9 23 207-229 4-26 (186)
350 2grj_A Dephospho-COA kinase; T 90.8 0.13 4.5E-06 50.0 3.4 25 205-229 10-34 (192)
351 2c95_A Adenylate kinase 1; tra 90.7 0.11 3.8E-06 50.7 2.8 23 207-229 9-31 (196)
352 2hf9_A Probable hydrogenase ni 90.7 0.2 6.7E-06 50.3 4.8 25 206-230 37-61 (226)
353 1pgv_A TMD-1, tropomodulin TMD 90.7 0.24 8.2E-06 48.0 5.1 91 580-671 29-136 (197)
354 1qf9_A UMP/CMP kinase, protein 90.7 0.12 4.1E-06 50.3 3.1 23 207-229 6-28 (194)
355 1ex7_A Guanylate kinase; subst 90.7 0.082 2.8E-06 51.0 1.7 22 208-229 2-23 (186)
356 2f1r_A Molybdopterin-guanine d 90.7 0.096 3.3E-06 49.9 2.2 22 208-229 3-24 (171)
357 2iyv_A Shikimate kinase, SK; t 90.6 0.085 2.9E-06 51.0 1.8 21 209-229 4-24 (184)
358 3aez_A Pantothenate kinase; tr 90.6 0.13 4.3E-06 54.5 3.3 24 206-229 89-112 (312)
359 2bwj_A Adenylate kinase 5; pho 90.6 0.12 4E-06 50.7 2.8 22 208-229 13-34 (199)
360 2bbw_A Adenylate kinase 4, AK4 90.6 0.11 3.9E-06 52.9 2.9 23 207-229 27-49 (246)
361 1znw_A Guanylate kinase, GMP k 90.5 0.12 4.1E-06 51.1 2.9 23 207-229 20-42 (207)
362 2plr_A DTMP kinase, probable t 90.5 0.12 4.1E-06 51.2 2.9 23 208-230 5-27 (213)
363 2pt5_A Shikimate kinase, SK; a 90.4 0.11 3.9E-06 49.2 2.5 21 209-229 2-22 (168)
364 4akg_A Glutathione S-transfera 90.4 3.1 0.00011 56.5 16.8 138 209-356 1269-1431(2695)
365 3l0o_A Transcription terminati 90.4 0.76 2.6E-05 49.1 8.9 52 190-248 164-216 (427)
366 2pcj_A ABC transporter, lipopr 90.4 0.2 6.8E-06 50.2 4.4 33 208-243 31-63 (224)
367 3tif_A Uncharacterized ABC tra 90.4 0.19 6.5E-06 50.8 4.2 33 208-243 32-64 (235)
368 1sq5_A Pantothenate kinase; P- 90.4 0.28 9.6E-06 51.9 5.8 24 206-229 79-102 (308)
369 2wsm_A Hydrogenase expression/ 90.3 0.18 6.1E-06 50.4 4.0 41 183-230 13-53 (221)
370 2pez_A Bifunctional 3'-phospho 90.3 0.13 4.6E-06 49.3 3.0 23 207-229 5-27 (179)
371 2cdn_A Adenylate kinase; phosp 90.3 0.12 4.2E-06 50.8 2.7 23 207-229 20-42 (201)
372 3jvv_A Twitching mobility prot 90.3 0.073 2.5E-06 57.4 1.1 110 208-330 124-235 (356)
373 1e6c_A Shikimate kinase; phosp 90.2 0.1 3.5E-06 49.8 2.0 21 209-229 4-24 (173)
374 1ls1_A Signal recognition part 90.2 0.59 2E-05 48.9 8.1 24 207-230 98-121 (295)
375 1gtv_A TMK, thymidylate kinase 90.2 0.1 3.6E-06 51.8 2.1 21 209-229 2-22 (214)
376 2vli_A Antibiotic resistance p 90.1 0.095 3.3E-06 50.6 1.7 23 207-229 5-27 (183)
377 2pbr_A DTMP kinase, thymidylat 90.1 0.13 4.4E-06 50.2 2.6 21 209-229 2-22 (195)
378 2onk_A Molybdate/tungstate ABC 90.1 0.19 6.6E-06 50.8 4.0 22 208-229 25-46 (240)
379 3gfo_A Cobalt import ATP-bindi 90.0 0.2 7E-06 51.7 4.2 22 208-229 35-56 (275)
380 2jeo_A Uridine-cytidine kinase 90.0 0.15 5.2E-06 51.9 3.2 24 206-229 24-47 (245)
381 3umf_A Adenylate kinase; rossm 90.0 0.15 5.2E-06 50.5 3.1 26 205-230 27-52 (217)
382 4e22_A Cytidylate kinase; P-lo 90.0 0.14 4.7E-06 52.5 2.9 23 207-229 27-49 (252)
383 3tlx_A Adenylate kinase 2; str 89.9 0.23 7.9E-06 50.4 4.5 24 206-229 28-51 (243)
384 3hjn_A DTMP kinase, thymidylat 89.9 0.5 1.7E-05 46.1 6.6 48 210-259 3-50 (197)
385 1rj9_A FTSY, signal recognitio 89.8 0.13 4.6E-06 54.0 2.7 23 207-229 102-124 (304)
386 1z6g_A Guanylate kinase; struc 89.8 0.12 4.2E-06 51.5 2.3 22 208-229 24-45 (218)
387 2z0h_A DTMP kinase, thymidylat 89.8 0.32 1.1E-05 47.4 5.3 21 209-229 2-22 (197)
388 1b0u_A Histidine permease; ABC 89.8 0.22 7.5E-06 51.2 4.2 33 208-243 33-65 (262)
389 2f6r_A COA synthase, bifunctio 89.7 0.18 6.1E-06 52.6 3.5 24 206-229 74-97 (281)
390 2wwf_A Thymidilate kinase, put 89.6 0.15 5.3E-06 50.4 2.8 23 207-229 10-32 (212)
391 2pt7_A CAG-ALFA; ATPase, prote 89.6 0.46 1.6E-05 50.6 6.7 105 208-327 172-276 (330)
392 1s96_A Guanylate kinase, GMP k 89.6 0.16 5.4E-06 50.6 2.8 23 207-229 16-38 (219)
393 1yrb_A ATP(GTP)binding protein 89.5 0.2 6.9E-06 51.5 3.8 26 204-229 11-36 (262)
394 2i3b_A HCR-ntpase, human cance 89.5 0.13 4.5E-06 49.8 2.2 22 209-230 3-24 (189)
395 1zd8_A GTP:AMP phosphotransfer 89.4 0.16 5.6E-06 51.0 2.8 23 207-229 7-29 (227)
396 1nn5_A Similar to deoxythymidy 89.4 0.16 5.6E-06 50.4 2.8 23 207-229 9-31 (215)
397 2yhs_A FTSY, cell division pro 89.4 0.46 1.6E-05 53.0 6.5 24 206-229 292-315 (503)
398 2r6a_A DNAB helicase, replicat 89.4 0.61 2.1E-05 52.3 7.8 51 207-260 203-253 (454)
399 3b9q_A Chloroplast SRP recepto 89.3 0.18 6.2E-06 53.0 3.2 24 206-229 99-122 (302)
400 1m7g_A Adenylylsulfate kinase; 89.3 0.18 6.2E-06 50.0 3.1 24 207-230 25-48 (211)
401 2olj_A Amino acid ABC transpor 89.3 0.25 8.7E-06 50.7 4.2 22 208-229 51-72 (263)
402 4g1u_C Hemin import ATP-bindin 89.3 0.25 8.7E-06 50.8 4.2 33 208-243 38-70 (266)
403 1sgw_A Putative ABC transporte 89.2 0.23 7.7E-06 49.2 3.6 22 208-229 36-57 (214)
404 1ji0_A ABC transporter; ATP bi 89.2 0.26 9E-06 49.9 4.2 22 208-229 33-54 (240)
405 2ff7_A Alpha-hemolysin translo 89.2 0.26 9E-06 50.1 4.2 22 208-229 36-57 (247)
406 3upu_A ATP-dependent DNA helic 89.1 0.4 1.4E-05 53.9 6.1 22 209-230 47-68 (459)
407 1vpl_A ABC transporter, ATP-bi 89.1 0.27 9.2E-06 50.3 4.2 22 208-229 42-63 (256)
408 2og2_A Putative signal recogni 89.0 0.4 1.4E-05 51.5 5.7 25 206-230 156-180 (359)
409 3p32_A Probable GTPase RV1496/ 89.0 0.36 1.2E-05 52.2 5.4 37 188-229 65-101 (355)
410 1g6h_A High-affinity branched- 89.0 0.27 9.3E-06 50.4 4.2 22 208-229 34-55 (257)
411 1aky_A Adenylate kinase; ATP:A 89.0 0.17 5.9E-06 50.5 2.7 22 208-229 5-26 (220)
412 3b5x_A Lipid A export ATP-bind 88.9 1.4 4.6E-05 51.3 10.6 23 207-229 369-391 (582)
413 3fb4_A Adenylate kinase; psych 88.9 0.18 6.1E-06 50.2 2.7 21 209-229 2-22 (216)
414 2ixe_A Antigen peptide transpo 88.9 0.28 9.6E-06 50.7 4.2 22 208-229 46-67 (271)
415 1g41_A Heat shock protein HSLU 88.9 0.22 7.6E-06 55.0 3.6 51 179-229 15-72 (444)
416 2v54_A DTMP kinase, thymidylat 88.8 0.18 6.2E-06 49.5 2.7 23 208-230 5-27 (204)
417 3nwj_A ATSK2; P loop, shikimat 88.8 0.15 5.2E-06 51.9 2.1 22 208-229 49-70 (250)
418 1vht_A Dephospho-COA kinase; s 88.7 0.2 6.8E-06 49.9 2.9 23 207-229 4-26 (218)
419 2q6t_A DNAB replication FORK h 88.7 1.2 4.3E-05 49.6 9.7 53 207-262 200-252 (444)
420 2yz2_A Putative ABC transporte 88.6 0.3 1E-05 50.3 4.2 22 208-229 34-55 (266)
421 3dl0_A Adenylate kinase; phosp 88.6 0.19 6.6E-06 50.0 2.7 21 209-229 2-22 (216)
422 2ehv_A Hypothetical protein PH 88.5 0.2 6.9E-06 51.1 2.9 23 207-229 30-52 (251)
423 1np6_A Molybdopterin-guanine d 88.5 0.18 6.1E-06 48.1 2.2 23 207-229 6-28 (174)
424 3d3q_A TRNA delta(2)-isopenten 88.4 0.21 7.2E-06 53.0 2.9 22 208-229 8-29 (340)
425 1tue_A Replication protein E1; 88.3 0.29 9.8E-06 47.5 3.5 23 208-230 59-81 (212)
426 1tf7_A KAIC; homohexamer, hexa 88.3 0.33 1.1E-05 55.7 4.8 24 207-230 281-304 (525)
427 3lnc_A Guanylate kinase, GMP k 88.3 0.16 5.3E-06 51.3 1.8 22 208-229 28-50 (231)
428 1oix_A RAS-related protein RAB 88.3 0.28 9.6E-06 47.6 3.6 25 206-230 28-52 (191)
429 3ake_A Cytidylate kinase; CMP 88.3 0.21 7.1E-06 49.3 2.7 21 209-229 4-24 (208)
430 1zak_A Adenylate kinase; ATP:A 88.2 0.21 7E-06 50.0 2.6 22 208-229 6-27 (222)
431 2ihy_A ABC transporter, ATP-bi 88.2 0.33 1.1E-05 50.3 4.2 33 208-243 48-80 (279)
432 3be4_A Adenylate kinase; malar 88.1 0.2 6.7E-06 50.0 2.3 22 208-229 6-27 (217)
433 2wji_A Ferrous iron transport 88.1 0.29 1E-05 46.1 3.5 23 208-230 4-26 (165)
434 3end_A Light-independent proto 87.9 0.41 1.4E-05 50.6 4.9 41 205-247 39-79 (307)
435 2zej_A Dardarin, leucine-rich 87.9 0.22 7.6E-06 48.0 2.6 22 209-230 4-25 (184)
436 3vr4_D V-type sodium ATPase su 87.9 0.45 1.5E-05 52.2 5.1 85 209-295 153-257 (465)
437 3b85_A Phosphate starvation-in 87.8 0.18 6.1E-06 49.8 1.8 22 209-230 24-45 (208)
438 3r20_A Cytidylate kinase; stru 87.8 0.23 8E-06 49.7 2.7 23 207-229 9-31 (233)
439 2r9v_A ATP synthase subunit al 87.8 0.7 2.4E-05 51.3 6.6 83 209-295 177-276 (515)
440 3gqb_B V-type ATP synthase bet 87.7 0.34 1.2E-05 53.1 4.1 87 209-295 149-260 (464)
441 3a8t_A Adenylate isopentenyltr 87.7 0.27 9.3E-06 51.9 3.2 24 207-230 40-63 (339)
442 2d2e_A SUFC protein; ABC-ATPas 87.6 0.26 8.8E-06 50.3 2.9 22 208-229 30-51 (250)
443 1e4v_A Adenylate kinase; trans 87.6 0.26 8.8E-06 49.0 2.8 21 209-229 2-22 (214)
444 2ged_A SR-beta, signal recogni 87.5 0.4 1.4E-05 46.4 4.2 25 206-230 47-71 (193)
445 3crm_A TRNA delta(2)-isopenten 87.4 0.26 9E-06 51.8 2.9 22 208-229 6-27 (323)
446 2zu0_C Probable ATP-dependent 87.4 0.27 9.2E-06 50.7 2.9 22 208-229 47-68 (267)
447 2xb4_A Adenylate kinase; ATP-b 87.4 0.25 8.6E-06 49.4 2.6 21 209-229 2-22 (223)
448 3k1j_A LON protease, ATP-depen 87.3 0.41 1.4E-05 56.0 4.8 43 179-230 41-83 (604)
449 3cmu_A Protein RECA, recombina 87.2 0.8 2.7E-05 59.8 7.6 81 208-295 1428-1514(2050)
450 3nh6_A ATP-binding cassette SU 87.2 0.4 1.4E-05 50.3 4.1 22 208-229 81-102 (306)
451 2qi9_C Vitamin B12 import ATP- 87.2 0.28 9.6E-06 49.9 2.9 22 208-229 27-48 (249)
452 2ghi_A Transport protein; mult 87.1 0.28 9.6E-06 50.3 2.9 23 208-230 47-69 (260)
453 2dyk_A GTP-binding protein; GT 87.1 0.31 1.1E-05 45.5 3.0 23 208-230 2-24 (161)
454 2nq2_C Hypothetical ABC transp 87.0 0.29 9.9E-06 50.0 2.9 23 208-230 32-54 (253)
455 3exa_A TRNA delta(2)-isopenten 86.9 0.3 1E-05 50.9 2.9 23 207-229 3-25 (322)
456 2vp4_A Deoxynucleoside kinase; 86.9 0.29 9.9E-06 49.2 2.8 24 206-229 19-42 (230)
457 1ltq_A Polynucleotide kinase; 86.7 0.3 1E-05 51.5 2.9 22 208-229 3-24 (301)
458 2qe7_A ATP synthase subunit al 86.6 0.96 3.3E-05 50.2 6.9 81 209-295 164-263 (502)
459 1cp2_A CP2, nitrogenase iron p 86.6 0.35 1.2E-05 50.0 3.3 37 208-246 2-38 (269)
460 2f9l_A RAB11B, member RAS onco 86.6 0.29 1E-05 47.8 2.6 24 207-230 5-28 (199)
461 2ce2_X GTPase HRAS; signaling 86.6 0.32 1.1E-05 45.5 2.7 22 209-230 5-26 (166)
462 3bgw_A DNAB-like replicative h 86.5 2.2 7.5E-05 47.4 10.0 51 207-261 197-247 (444)
463 2wjg_A FEOB, ferrous iron tran 86.5 0.39 1.3E-05 46.2 3.5 25 206-230 6-30 (188)
464 1ak2_A Adenylate kinase isoenz 86.5 0.3 1E-05 49.2 2.7 23 207-229 16-38 (233)
465 3sop_A Neuronal-specific septi 86.4 0.32 1.1E-05 50.2 2.9 21 209-229 4-24 (270)
466 2eyu_A Twitching motility prot 86.4 0.33 1.1E-05 49.8 2.9 23 207-229 25-47 (261)
467 4eaq_A DTMP kinase, thymidylat 86.2 0.53 1.8E-05 47.2 4.3 25 206-230 25-49 (229)
468 3sr0_A Adenylate kinase; phosp 86.1 0.33 1.1E-05 47.7 2.7 22 209-230 2-23 (206)
469 3zvl_A Bifunctional polynucleo 86.1 0.31 1.1E-05 54.0 2.7 25 206-230 257-281 (416)
470 1q3t_A Cytidylate kinase; nucl 86.1 0.31 1.1E-05 49.2 2.5 25 205-229 14-38 (236)
471 2v3c_C SRP54, signal recogniti 86.1 0.41 1.4E-05 53.0 3.7 25 206-230 98-122 (432)
472 3fvq_A Fe(3+) IONS import ATP- 86.0 0.54 1.9E-05 50.3 4.5 22 208-229 31-52 (359)
473 2afh_E Nitrogenase iron protei 86.0 0.39 1.3E-05 50.2 3.3 39 207-247 2-40 (289)
474 2v9p_A Replication protein E1; 86.0 0.33 1.1E-05 50.8 2.7 23 207-229 126-148 (305)
475 3foz_A TRNA delta(2)-isopenten 85.8 0.4 1.4E-05 49.8 3.2 24 206-229 9-32 (316)
476 3tui_C Methionine import ATP-b 85.8 0.54 1.8E-05 50.4 4.3 22 208-229 55-76 (366)
477 3e1s_A Exodeoxyribonuclease V, 85.8 1 3.5E-05 52.0 6.9 22 208-229 205-226 (574)
478 2nzj_A GTP-binding protein REM 85.8 0.37 1.3E-05 45.6 2.8 24 207-230 4-27 (175)
479 3mfy_A V-type ATP synthase alp 85.7 1.2 4.2E-05 49.8 7.1 47 208-258 228-275 (588)
480 3con_A GTPase NRAS; structural 85.5 0.36 1.2E-05 46.7 2.6 23 208-230 22-44 (190)
481 1nlf_A Regulatory protein REPA 85.5 0.4 1.4E-05 49.9 3.0 22 208-229 31-52 (279)
482 3q72_A GTP-binding protein RAD 85.5 0.38 1.3E-05 45.1 2.7 22 209-230 4-25 (166)
483 2c61_A A-type ATP synthase non 85.3 0.5 1.7E-05 52.1 3.8 87 209-295 154-258 (469)
484 2qmh_A HPR kinase/phosphorylas 85.3 0.41 1.4E-05 46.1 2.8 23 208-230 35-57 (205)
485 1z2a_A RAS-related protein RAB 85.3 0.48 1.6E-05 44.4 3.3 24 207-230 5-28 (168)
486 1fzq_A ADP-ribosylation factor 85.2 0.52 1.8E-05 45.2 3.6 25 206-230 15-39 (181)
487 2iw3_A Elongation factor 3A; a 85.2 3.9 0.00013 49.7 11.8 118 208-331 462-610 (986)
488 1nij_A Hypothetical protein YJ 85.2 0.41 1.4E-05 50.9 3.0 25 206-230 3-27 (318)
489 2r8r_A Sensor protein; KDPD, P 85.1 0.69 2.4E-05 45.7 4.3 104 209-326 8-127 (228)
490 3kta_A Chromosome segregation 85.0 0.45 1.6E-05 45.6 3.0 21 209-229 28-48 (182)
491 1a7j_A Phosphoribulokinase; tr 85.0 0.19 6.6E-06 52.5 0.3 23 207-229 5-27 (290)
492 2gj8_A MNME, tRNA modification 84.9 0.51 1.7E-05 44.8 3.3 23 208-230 5-27 (172)
493 3d31_A Sulfate/molybdate ABC t 84.9 0.62 2.1E-05 49.8 4.2 33 208-243 27-59 (348)
494 3q85_A GTP-binding protein REM 84.9 0.42 1.4E-05 45.0 2.7 22 208-229 3-24 (169)
495 1f6b_A SAR1; gtpases, N-termin 84.8 0.43 1.5E-05 46.6 2.8 23 208-230 26-48 (198)
496 1m7b_A RND3/RHOE small GTP-bin 84.8 0.43 1.5E-05 45.9 2.7 25 206-230 6-30 (184)
497 3vkw_A Replicase large subunit 84.8 1.2 4.2E-05 48.8 6.6 25 205-229 159-183 (446)
498 3llm_A ATP-dependent RNA helic 84.7 2.1 7.2E-05 42.9 8.0 21 208-228 77-97 (235)
499 2erx_A GTP-binding protein DI- 84.7 0.43 1.5E-05 45.0 2.7 23 208-230 4-26 (172)
500 1u8z_A RAS-related protein RAL 84.7 0.41 1.4E-05 44.8 2.6 23 208-230 5-27 (168)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=2.6e-49 Score=465.06 Aligned_cols=316 Identities=17% Similarity=0.251 Sum_probs=259.3
Q ss_pred cccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhc--CcccccCCCeEEEEEecCCC--CHHHHHHH
Q 001998 182 RGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYN--DNDVINNFEIRVWVCVSDPF--DEFSVAKA 257 (984)
Q Consensus 182 ~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~--~~~~~~~F~~~~wv~~s~~~--~~~~~~~~ 257 (984)
|||++++++|.++|.... .+..+||+|+||||+||||||++||+ |.+++.+|+.++||++++.+ +...+++.
T Consensus 131 ~GR~~~~~~l~~~L~~~~----~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~ 206 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC----DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTD 206 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT----TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHH
T ss_pred CCchHHHHHHHHHHhccc----CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHH
Confidence 599999999999997653 23589999999999999999999998 67899999999999999985 89999999
Q ss_pred HHHHhcCCCC-------CcccHHHHHHHHHHHhCCC-ceEEEEEcCCCCCcCChhhHHHhhcCCCCCcEEEEEccchHHH
Q 001998 258 IIEELEGSAT-------DLHELNSLLRRIGANIAGQ-KFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILLTTRKETVA 329 (984)
Q Consensus 258 i~~~l~~~~~-------~~~~~~~~~~~l~~~l~~k-r~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~v~ 329 (984)
|+++++.... +..+.+.+...+++.|.++ ||||||||||+.+...|.. .+||+||||||++.++
T Consensus 207 il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~--------~~gs~ilvTTR~~~v~ 278 (549)
T 2a5y_B 207 ILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQ--------ELRLRCLVTTRDVEIS 278 (549)
T ss_dssp HHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHH--------HTTCEEEEEESBGGGG
T ss_pred HHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhcccc--------cCCCEEEEEcCCHHHH
Confidence 9999986421 2234567889999999996 9999999999853212221 2799999999999999
Q ss_pred hhcC-CCCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHHHHhhccCCCHHHHHHHHhh
Q 001998 330 RMME-STDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLPLAAKTIGSLLQFKRTKEEWQSVLDS 408 (984)
Q Consensus 330 ~~~~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~~l~~~~~~~~w~~~l~~ 408 (984)
..++ ...+|+|++|+.++||+||.+++|... .++.+++++++|+++|+|+||||+++|+.|+.+ + .+|...+.+
T Consensus 279 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~---~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~-w~~~~~l~~ 353 (549)
T 2a5y_B 279 NAASQTCEFIEVTSLEIDECYDFLEAYGMPMP---VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T-FEKMAQLNN 353 (549)
T ss_dssp GGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S-HHHHHHHHH
T ss_pred HHcCCCCeEEECCCCCHHHHHHHHHHHhcCCC---CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h-HHHHHHhHH
Confidence 9876 346899999999999999999987653 246889999999999999999999999999765 2 334444444
Q ss_pred hhhhhhhhcccccchhhccccCCChhhhhhhh-----------hcccCCCCCccChHHHHHHHHHc--CCcCCCC-CchH
Q 001998 409 EMWQLEEFERGLSAPLFLSYNDLPFEIKRCFS-----------YCAIFPKGSSLKKDELVKLWMAQ--GYIVPKG-NKEM 474 (984)
Q Consensus 409 ~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl-----------~~~~fp~~~~i~~~~li~~Wiae--g~i~~~~-~~~~ 474 (984)
..+.. ....+.+++.+||++||+++|.||+ |||+||+++.|+ +++|+|+ ||+...+ +.++
T Consensus 354 ~l~~~--~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~ 427 (549)
T 2a5y_B 354 KLESR--GLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLD 427 (549)
T ss_dssp HHHHH--CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCT
T ss_pred Hhhcc--cHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCH
Confidence 43332 2456999999999999999999999 999999999998 8999999 9998776 6678
Q ss_pred HHhHHHHHHHHhhcccccceecCCCCceeeEEechHHHHHHHHhhccceE
Q 001998 475 EVIGLEYFDCLASRSFYQQFVKDDDNMVIGCTMHDVVHDFAQFLTNNECV 524 (984)
Q Consensus 475 e~~~~~~~~~L~~r~l~~~~~~~~~~~~~~~~~Hdlv~~~~~~~~~~e~~ 524 (984)
+++++ ||++|+++||+++...+ ...+|+|||+||+||+.++.+++.
T Consensus 428 ~~~~~-~l~~L~~rsLl~~~~~~---~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 428 DEVAD-RLKRLSKRGALLSGKRM---PVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp HHHHH-HHHHTTTBSSCSEEECS---SSCEEECCHHHHHHHHTTSCTHHH
T ss_pred HHHHH-HHHHHHHcCCeeEecCC---CceEEEeChHHHHHHHHHHHHHHH
Confidence 88888 99999999999987543 445799999999999999887654
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=9.9e-40 Score=383.93 Aligned_cols=285 Identities=18% Similarity=0.204 Sum_probs=228.8
Q ss_pred cccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCe-EEEEEecCCCCHHHHHHHH
Q 001998 180 EVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEI-RVWVCVSDPFDEFSVAKAI 258 (984)
Q Consensus 180 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~~s~~~~~~~~~~~i 258 (984)
..|||++++++|.++|...+ ..++|+|+||||+||||||+++|++.+++.+|+. ++||++++.++...++..|
T Consensus 129 ~~VGRe~eLeeL~elL~~~d------~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~L 202 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELR------PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML 202 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCC------SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhccC------CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHH
Confidence 34999999999999997532 3789999999999999999999998788999986 9999999999998888888
Q ss_pred HHHhcCC------CCC-----cccHHHHHHHHHHHh---CCCceEEEEEcCCCCCcCChhhHHHhhcCCCCCcEEEEEcc
Q 001998 259 IEELEGS------ATD-----LHELNSLLRRIGANI---AGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILLTTR 324 (984)
Q Consensus 259 ~~~l~~~------~~~-----~~~~~~~~~~l~~~l---~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr 324 (984)
++.+... ..+ ..+.+.+...+++.| .+||+||||||||+. +.|+.+ + +||+||||||
T Consensus 203 l~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~--eqLe~f----~---pGSRILVTTR 273 (1221)
T 1vt4_I 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA--KAWNAF----N---LSCKILLTTR 273 (1221)
T ss_dssp HHHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCH--HHHHHH----H---SSCCEEEECS
T ss_pred HHHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChH--HHHHhh----C---CCeEEEEecc
Confidence 8754321 000 123455667777765 789999999999973 345443 3 6899999999
Q ss_pred chHHHhhcCCCCeEeCC------CCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHHHHhhccCC-
Q 001998 325 KETVARMMESTDIVYVQ------GLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLPLAAKTIGSLLQFKR- 397 (984)
Q Consensus 325 ~~~v~~~~~~~~~~~l~------~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~~l~~~~- 397 (984)
++.++..+.....+.++ +|+.+|||+||.+.. +.. ..++..+| |+|+||||+++|+.|+.+.
T Consensus 274 d~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~-------~eeL~~eI---CgGLPLALkLaGs~Lr~k~~ 342 (1221)
T 1vt4_I 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR-------PQDLPREV---LTTNPRRLSIIAESIRDGLA 342 (1221)
T ss_dssp CSHHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC-------TTTHHHHH---CCCCHHHHHHHHHHHHHSCS
T ss_pred ChHHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCC-------HHHHHHHH---hCCCHHHHHHHHHHHhCCCC
Confidence 99998755544456666 999999999999983 222 12223333 9999999999999998874
Q ss_pred CHHHHHHHHhhhhhhhhhhcccccchhhccccCCChhh-hhhhhhcccCCCCCccChHHHHHHHHHcCCcCCCCCchHHH
Q 001998 398 TKEEWQSVLDSEMWQLEEFERGLSAPLFLSYNDLPFEI-KRCFSYCAIFPKGSSLKKDELVKLWMAQGYIVPKGNKEMEV 476 (984)
Q Consensus 398 ~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~-k~cfl~~~~fp~~~~i~~~~li~~Wiaeg~i~~~~~~~~e~ 476 (984)
+.++|... ....+..+|.+||+.||+++ |.||+|||+||+++.|+++.++.+|+++| ++
T Consensus 343 s~eeW~~~----------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG----------ee 402 (1221)
T 1vt4_I 343 TWDNWKHV----------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI----------KS 402 (1221)
T ss_dssp SHHHHHHC----------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC----------SH
T ss_pred CHHHHhcC----------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC----------HH
Confidence 67788753 13458899999999999999 99999999999999999999999999987 13
Q ss_pred hHHHHHHHHhhcccccceecCCCCceeeEEechHHHHHH
Q 001998 477 IGLEYFDCLASRSFYQQFVKDDDNMVIGCTMHDVVHDFA 515 (984)
Q Consensus 477 ~~~~~~~~L~~r~l~~~~~~~~~~~~~~~~~Hdlv~~~~ 515 (984)
.+..++++|+++||++.. +...+|+|||++++++
T Consensus 403 dAe~~L~eLvdRSLLq~d-----~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 403 DVMVVVNKLHKYSLVEKQ-----PKESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHHHHHHHTSSSSSBC-----SSSSEEBCCCHHHHHH
T ss_pred HHHHHHHHHHhhCCEEEe-----CCCCEEEehHHHHHHh
Confidence 588899999999999863 2234689999999865
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=6.7e-37 Score=400.50 Aligned_cols=312 Identities=19% Similarity=0.252 Sum_probs=249.8
Q ss_pred ccCCcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCccc-ccCC-CeEEEEEecCCCC--H
Q 001998 176 IDVSEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDV-INNF-EIRVWVCVSDPFD--E 251 (984)
Q Consensus 176 ~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F-~~~~wv~~s~~~~--~ 251 (984)
.+...||||++++++|.++|.... ...++|+|+||||+||||||+++|++.+. ..+| +.++||++++..+ .
T Consensus 121 ~~~~~~vgR~~~~~~l~~~l~~~~-----~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 195 (1249)
T 3sfz_A 121 QRPVIFVTRKKLVHAIQQKLWKLN-----GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGL 195 (1249)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHTTT-----TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHH
T ss_pred CCCceeccHHHHHHHHHHHHhhcc-----CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHH
Confidence 445679999999999999997543 35899999999999999999999997544 4445 6788999998544 4
Q ss_pred HHHHHHHHHHhcCCC----CCcccHHHHHHHHHHHhCCC--ceEEEEEcCCCCCcCChhhHHHhhcCCCCCcEEEEEccc
Q 001998 252 FSVAKAIIEELEGSA----TDLHELNSLLRRIGANIAGQ--KFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILLTTRK 325 (984)
Q Consensus 252 ~~~~~~i~~~l~~~~----~~~~~~~~~~~~l~~~l~~k--r~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~ 325 (984)
...+..++..+.... ....+.+.+...++..+.++ ||||||||||+. ..|.. ..+||+||||||+
T Consensus 196 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~--~~~~~-------~~~~~~ilvTtR~ 266 (1249)
T 3sfz_A 196 LMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP--WVLKA-------FDNQCQILLTTRD 266 (1249)
T ss_dssp HHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH--HHHTT-------TCSSCEEEEEESS
T ss_pred HHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH--HHHHh-------hcCCCEEEEEcCC
Confidence 455777777776532 22356788899999999887 999999999864 23332 3679999999999
Q ss_pred hHHHhh-cCCCCeEeCCC-CChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHHHHhhccCCCHHHHH
Q 001998 326 ETVARM-MESTDIVYVQG-LSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLPLAAKTIGSLLQFKRTKEEWQ 403 (984)
Q Consensus 326 ~~v~~~-~~~~~~~~l~~-L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~~l~~~~~~~~w~ 403 (984)
+.++.. ++....+.+.+ |+.+++++||...++... +.+.+++++|+++|+|+||||+++|++|+.+. ..|.
T Consensus 267 ~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~-----~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~ 339 (1249)
T 3sfz_A 267 KSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKK-----EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWA 339 (1249)
T ss_dssp TTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCS-----TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHH
T ss_pred HHHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCCh-----hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHH
Confidence 999854 45677899996 999999999999885332 34456788999999999999999999998765 3577
Q ss_pred HHHhhhhhhh----h----hhcccccchhhccccCCChhhhhhhhhcccCCCCCccChHHHHHHHHHcCCcCCCCCchHH
Q 001998 404 SVLDSEMWQL----E----EFERGLSAPLFLSYNDLPFEIKRCFSYCAIFPKGSSLKKDELVKLWMAQGYIVPKGNKEME 475 (984)
Q Consensus 404 ~~l~~~~~~~----~----~~~~~~~~~l~~sy~~L~~~~k~cfl~~~~fp~~~~i~~~~li~~Wiaeg~i~~~~~~~~e 475 (984)
..++...... . .....+..++.+||+.||+++|.||+|||+||+++.|+++.++.+|.++ +
T Consensus 340 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-----------~ 408 (1249)
T 3sfz_A 340 YYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE-----------T 408 (1249)
T ss_dssp HHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-----------H
T ss_pred HHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC-----------H
Confidence 6665432211 0 1114588999999999999999999999999999999999999999654 4
Q ss_pred HhHHHHHHHHhhcccccceecCCCCceeeEEechHHHHHHHHhhccc
Q 001998 476 VIGLEYFDCLASRSFYQQFVKDDDNMVIGCTMHDVVHDFAQFLTNNE 522 (984)
Q Consensus 476 ~~~~~~~~~L~~r~l~~~~~~~~~~~~~~~~~Hdlv~~~~~~~~~~e 522 (984)
+.++.++++|+++||++... ++...+|+|||++|++++..+.++
T Consensus 409 ~~~~~~l~~L~~~sl~~~~~---~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 409 EEVEDILQEFVNKSLLFCNR---NGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHHHHHHHTTSCEEEE---SSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHhccceEEec---CCCceEEEecHHHHHHHHhhhhHH
Confidence 67899999999999998543 344567999999999999987765
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=5.8e-34 Score=340.55 Aligned_cols=306 Identities=20% Similarity=0.242 Sum_probs=234.7
Q ss_pred cCCcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCccc-ccCC-CeEEEEEecCCCCHHHH
Q 001998 177 DVSEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDV-INNF-EIRVWVCVSDPFDEFSV 254 (984)
Q Consensus 177 ~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F-~~~~wv~~s~~~~~~~~ 254 (984)
.+..||||+.++++|.++|.... ...++|+|+||||+||||||+.+|++.++ ..+| +.++|++++.. +...+
T Consensus 122 ~~~~~vGR~~~l~~L~~~L~~~~-----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~ 195 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKLSKLK-----GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGL 195 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTST-----TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHH
T ss_pred CCCeecccHHHHHHHHHHHhccc-----CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHH
Confidence 34679999999999999997532 25789999999999999999999998666 7889 58999999876 44444
Q ss_pred HHHH---HHHhcCC----CCCcccHHHHHHHHHHHhCC--CceEEEEEcCCCCCcCChhhHHHhhcCCCCCcEEEEEccc
Q 001998 255 AKAI---IEELEGS----ATDLHELNSLLRRIGANIAG--QKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILLTTRK 325 (984)
Q Consensus 255 ~~~i---~~~l~~~----~~~~~~~~~~~~~l~~~l~~--kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~ 325 (984)
+..+ +..+... .....+.+.+...+...+.+ +++||||||+|+. ..+. ...+|++||||||+
T Consensus 196 ~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~-----~~l~----~l~~~~~ilvTsR~ 266 (591)
T 1z6t_A 196 LMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS-----WVLK----AFDSQCQILLTTRD 266 (591)
T ss_dssp HHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH-----HHHH----TTCSSCEEEEEESC
T ss_pred HHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH-----HHHH----HhcCCCeEEEECCC
Confidence 4444 3344421 12335567777888887776 7999999999863 2222 22568999999999
Q ss_pred hHHHhhcCCCCeEeC---CCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHHHHhhccCCCHHHH
Q 001998 326 ETVARMMESTDIVYV---QGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLPLAAKTIGSLLQFKRTKEEW 402 (984)
Q Consensus 326 ~~v~~~~~~~~~~~l---~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~~l~~~~~~~~w 402 (984)
..++..+. ...+.+ ++|+.+|+++||...++.. .+...+.+.+|+++|+|+||||..+|+.++.+. ..|
T Consensus 267 ~~~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~-----~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w 338 (591)
T 1z6t_A 267 KSVTDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMK-----KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRW 338 (591)
T ss_dssp GGGGTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSC-----GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCH
T ss_pred cHHHHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCC-----cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhH
Confidence 99887654 233443 6999999999999988642 122345678899999999999999999998764 368
Q ss_pred HHHHhhhhhhhh--------hhcccccchhhccccCCChhhhhhhhhcccCCCCCccChHHHHHHHHHcCCcCCCCCchH
Q 001998 403 QSVLDSEMWQLE--------EFERGLSAPLFLSYNDLPFEIKRCFSYCAIFPKGSSLKKDELVKLWMAQGYIVPKGNKEM 474 (984)
Q Consensus 403 ~~~l~~~~~~~~--------~~~~~~~~~l~~sy~~L~~~~k~cfl~~~~fp~~~~i~~~~li~~Wiaeg~i~~~~~~~~ 474 (984)
..+++....... .....+..++..||+.||++.|.||++||+||+++.|+.+.+..+|.++
T Consensus 339 ~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~----------- 407 (591)
T 1z6t_A 339 EYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME----------- 407 (591)
T ss_dssp HHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-----------
T ss_pred HHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC-----------
Confidence 777664332110 1123578899999999999999999999999999999999999999543
Q ss_pred HHhHHHHHHHHhhcccccceecCCCCceeeEEechHHHHHHHHhh
Q 001998 475 EVIGLEYFDCLASRSFYQQFVKDDDNMVIGCTMHDVVHDFAQFLT 519 (984)
Q Consensus 475 e~~~~~~~~~L~~r~l~~~~~~~~~~~~~~~~~Hdlv~~~~~~~~ 519 (984)
.+.+..++++|+++||++... ++...+|+||+++|++++...
T Consensus 408 ~~~~~~~l~~L~~~~Ll~~~~---~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 408 TEEVEDILQEFVNKSLLFCDR---NGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp HHHHHHHHHHHHHTTSSEEEE---ETTEEEEECCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCcCeEEec---CCCccEEEEcHHHHHHHHhhh
Confidence 245788999999999998543 234457899999999998873
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.93 E-value=7.1e-26 Score=278.39 Aligned_cols=391 Identities=19% Similarity=0.190 Sum_probs=285.0
Q ss_pred ccceeEEEEEecCcc-cccccccCC-CceeEEeccCCCcchhhhHHhhhccccccee-cCCCCccc-cCccc-ccccCcc
Q 001998 542 QDKLRHSILVLDKVA-SFPVSIFNA-KKLRSLLIHSPLEVLSPVLKGLFDHLTYGED-DGGENTVH-DIPRE-IEKLIHL 616 (984)
Q Consensus 542 ~~~~r~l~l~~~~~~-~~~~~~~~~-~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lrv-~l~~~~i~-~lp~~-i~~L~~L 616 (984)
..+++++.+..+.+. .+|..+... ++|+.|++.+|. +....+..|.+++.|+. ++++|.+. .+|.. ++++++|
T Consensus 268 l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~--l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L 345 (768)
T 3rgz_A 268 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNH--FYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGL 345 (768)
T ss_dssp CTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSE--EEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTC
T ss_pred cCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCc--CCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCC
Confidence 456888888877665 556666554 899999998886 33345666888899999 99999886 78866 8899999
Q ss_pred ceEEecCCCcc-ccchhhccCC-cccEEecccccccccccccccC--CCCCCeEEeccCCCcccCCccCCCCCCCCcCCc
Q 001998 617 RSLRLAGLKIE-ELPETCCKLF-NLQTLDINECYRLKRLPQGVGS--LVNLRHLVVSLNGDLDYLPKGVERLTSLRTLRE 692 (984)
Q Consensus 617 r~L~L~~~~i~-~lp~~i~~L~-~L~~L~L~~~~~l~~lP~~i~~--L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~ 692 (984)
++|+|++|.+. .+|..+.++. +|++|++++|.....+|..+.. +++|++|++++|.....+|..++++++|+.|++
T Consensus 346 ~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 425 (768)
T 3rgz_A 346 KVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHL 425 (768)
T ss_dssp CEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEEC
T ss_pred CEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEEC
Confidence 99999999987 8888888887 8999999998855667877776 888999999998655578888999999999988
Q ss_pred eEecCCCCcccccccccccccccccCCCeeEEcCCCCCCChhhhhHhcccCCCCCCeEEEEEcCCcccccCcCchhhccH
Q 001998 693 FVVSSTGGKYCTKACKVEGLRQLNHLRGTLRIRGLGNVTDVEEAEKADLEKKKNIVGLELRFDKEEAATEGINEENEINH 772 (984)
Q Consensus 693 ~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~ 772 (984)
..+...+ .....+..+.+|+ .|.+.+..-... ....+..+++|+.|+++.|.....
T Consensus 426 s~N~l~~-------~~p~~l~~l~~L~-~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~------------ 481 (768)
T 3rgz_A 426 SFNYLSG-------TIPSSLGSLSKLR-DLKLWLNMLEGE----IPQELMYVKTLETLILDFNDLTGE------------ 481 (768)
T ss_dssp CSSEEES-------CCCGGGGGCTTCC-EEECCSSCCCSC----CCGGGGGCTTCCEEECCSSCCCSC------------
T ss_pred cCCcccC-------cccHHHhcCCCCC-EEECCCCcccCc----CCHHHcCCCCceEEEecCCcccCc------------
Confidence 7665432 1122344444555 666554432111 123456788999999998876532
Q ss_pred HHHhhcCCCCCCCCeEEEeecCCCCCCCchhhcCCCCcEEEEeCcCCCCcCCC-CCCCCCcceeeeccccCceEecceec
Q 001998 773 QAISEALRPPPDLEALEIMHYKGQTAFPSWIVSLNKLKKLKLSSCCKCEIMPP-LGALPSLEILQIQRMESVKRVGVEFL 851 (984)
Q Consensus 773 ~~~~~~l~~~~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~l~~-l~~Lp~L~~L~L~~~~~l~~~~~~~~ 851 (984)
++..+..+++|++|++++|.+.+.+|.|++.+++|+.|+|++|.....+|. ++.+++|+.|++++|.....++..++
T Consensus 482 --~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~ 559 (768)
T 3rgz_A 482 --IPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF 559 (768)
T ss_dssp --CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGG
T ss_pred --CCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHh
Confidence 355677789999999999999977999999999999999999988877776 89999999999999875545555443
Q ss_pred CccCCCC-----------------------------------------------------CCCCCCccCccccccccccc
Q 001998 852 GIESFND-----------------------------------------------------YAPSSSLSLTAFPKLKELTL 878 (984)
Q Consensus 852 ~~~~~~~-----------------------------------------------------l~~~~~~~~~~f~~L~~L~l 878 (984)
....... +.+..+..++.+++|+.|++
T Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdL 639 (768)
T 3rgz_A 560 KQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDM 639 (768)
T ss_dssp TTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEEC
T ss_pred cccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEEC
Confidence 2211100 00011222333455555555
Q ss_pred ccCCCCcccccCCCCcccCCcccEEeeecCcCCCCCCcCCCCCCCcCeEEeccCcchHHhhccCCCCCccccccccceee
Q 001998 879 FHLDGCEEWDFGKEDVIIMPQLCYLDIRFCRKLKSLPDQLLQSSTLEKLRIIRAPILRERFKKDTGEDWSKISHIRDIQI 958 (984)
Q Consensus 879 ~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~i~~i~~l~~ 958 (984)
++ +......+..++.+++|+.|+|++|.....+|..+..+++|+.|++++|..- ...+..+..+..+..+++
T Consensus 640 s~---N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~-----g~ip~~l~~l~~L~~L~l 711 (768)
T 3rgz_A 640 SY---NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD-----GRIPQAMSALTMLTEIDL 711 (768)
T ss_dssp CS---SCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCE-----ECCCGGGGGCCCCSEEEC
T ss_pred cC---CcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCccc-----CcCChHHhCCCCCCEEEC
Confidence 44 3333445566778999999999999866789999999999999999998752 123345566777888888
Q ss_pred cCceeeeeee
Q 001998 959 DHEYVQGFGF 968 (984)
Q Consensus 959 ~~~~~~~~~~ 968 (984)
.+|.+.+.-.
T Consensus 712 s~N~l~g~iP 721 (768)
T 3rgz_A 712 SNNNLSGPIP 721 (768)
T ss_dssp CSSEEEEECC
T ss_pred cCCcccccCC
Confidence 8888887633
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.93 E-value=5.2e-26 Score=279.59 Aligned_cols=253 Identities=18% Similarity=0.146 Sum_probs=186.8
Q ss_pred cceeEEEEEecCcc-cccccccCCCceeEEeccCCCcchh-hhHHhhhccccccee-cCCCCccc-cCcccccccC-ccc
Q 001998 543 DKLRHSILVLDKVA-SFPVSIFNAKKLRSLLIHSPLEVLS-PVLKGLFDHLTYGED-DGGENTVH-DIPREIEKLI-HLR 617 (984)
Q Consensus 543 ~~~r~l~l~~~~~~-~~~~~~~~~~~Lr~L~l~~~~~~~~-~~~~~~~~~l~~Lrv-~l~~~~i~-~lp~~i~~L~-~Lr 617 (984)
.+++++.+..+.+. ..|..+..+++|++|++.+|. +. ......+.+++.|+. ++++|.+. .+|..+.++. +|+
T Consensus 294 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~--l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~ 371 (768)
T 3rgz_A 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN--FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLL 371 (768)
T ss_dssp TTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSE--EEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCS
T ss_pred CcCCEEECcCCcCCCccchHHhcCCCccEEECCCCc--ccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCc
Confidence 67889998888765 457788899999999999986 32 223445888999999 99999986 7898898887 899
Q ss_pred eEEecCCCcc-ccchhhcc--CCcccEEecccccccccccccccCCCCCCeEEeccCCCcccCCccCCCCCCCCcCCceE
Q 001998 618 SLRLAGLKIE-ELPETCCK--LFNLQTLDINECYRLKRLPQGVGSLVNLRHLVVSLNGDLDYLPKGVERLTSLRTLREFV 694 (984)
Q Consensus 618 ~L~L~~~~i~-~lp~~i~~--L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~ 694 (984)
+|++++|.+. .+|..++. +++|++|++++|.....+|..+.++++|++|++++|.....+|..++++++|+.|++..
T Consensus 372 ~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~ 451 (768)
T 3rgz_A 372 TLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWL 451 (768)
T ss_dssp EEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCS
T ss_pred EEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCC
Confidence 9999999877 67777776 78899999999885557888888999999999988855557788888888998888876
Q ss_pred ecCCCCcccccccccccccccccCCCeeEEcCCCCCCChhhhhHhcccCCCCCCeEEEEEcCCcccccCcCchhhccHHH
Q 001998 695 VSSTGGKYCTKACKVEGLRQLNHLRGTLRIRGLGNVTDVEEAEKADLEKKKNIVGLELRFDKEEAATEGINEENEINHQA 774 (984)
Q Consensus 695 ~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~ 774 (984)
+...+ .....+..+.+|+ .|.+.+..-... ....+..+++|+.|+++.|.....
T Consensus 452 n~l~~-------~~p~~~~~l~~L~-~L~L~~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~-------------- 505 (768)
T 3rgz_A 452 NMLEG-------EIPQELMYVKTLE-TLILDFNDLTGE----IPSGLSNCTNLNWISLSNNRLTGE-------------- 505 (768)
T ss_dssp SCCCS-------CCCGGGGGCTTCC-EEECCSSCCCSC----CCGGGGGCTTCCEEECCSSCCCSC--------------
T ss_pred CcccC-------cCCHHHcCCCCce-EEEecCCcccCc----CCHHHhcCCCCCEEEccCCccCCc--------------
Confidence 65442 1122333444444 555554322111 123456778888888888876432
Q ss_pred HhhcCCCCCCCCeEEEeecCCCCCCCchhhcCCCCcEEEEeCcCCCCcC
Q 001998 775 ISEALRPPPDLEALEIMHYKGQTAFPSWIVSLNKLKKLKLSSCCKCEIM 823 (984)
Q Consensus 775 ~~~~l~~~~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~l 823 (984)
++..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|.....+
T Consensus 506 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i 554 (768)
T 3rgz_A 506 IPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 554 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBC
T ss_pred CChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcC
Confidence 3455666788888888888887668888888888888888887654333
No 7
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.92 E-value=5.5e-25 Score=267.90 Aligned_cols=344 Identities=14% Similarity=0.122 Sum_probs=249.5
Q ss_pred cccceeEEEEEecCccc------------------cccccc--CCCceeEEeccCCCcchhhhHHhhhccccccee-cCC
Q 001998 541 SQDKLRHSILVLDKVAS------------------FPVSIF--NAKKLRSLLIHSPLEVLSPVLKGLFDHLTYGED-DGG 599 (984)
Q Consensus 541 ~~~~~r~l~l~~~~~~~------------------~~~~~~--~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lrv-~l~ 599 (984)
...+++.|.+..+.+.. +|..+. ++++|++|++.+|. +...++..|.+++.|+. +++
T Consensus 446 ~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~--l~~~iP~~l~~L~~L~~L~Ls 523 (876)
T 4ecn_A 446 RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCP--NMTQLPDFLYDLPELQSLNIA 523 (876)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCT--TCCSCCGGGGGCSSCCEEECT
T ss_pred cCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCC--CCccChHHHhCCCCCCEEECc
Confidence 44689999999998887 788877 99999999999986 33335667899999999 999
Q ss_pred CCc-ccc--CcccccccC-------ccceEEecCCCccccch--hhccCCcccEEecccccccccccccccCCCCCCeEE
Q 001998 600 ENT-VHD--IPREIEKLI-------HLRSLRLAGLKIEELPE--TCCKLFNLQTLDINECYRLKRLPQGVGSLVNLRHLV 667 (984)
Q Consensus 600 ~~~-i~~--lp~~i~~L~-------~Lr~L~L~~~~i~~lp~--~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~ 667 (984)
+|. +.. +|..++++. +|++|+|++|.+..+|. .++++++|++|+|++|. +..+| .+.++++|++|+
T Consensus 524 ~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-~~~~L~~L~~L~ 601 (876)
T 4ecn_A 524 CNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK-VRHLE-AFGTNVKLTDLK 601 (876)
T ss_dssp TCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSC-CCBCC-CCCTTSEESEEE
T ss_pred CCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCC-cccch-hhcCCCcceEEE
Confidence 998 774 888888776 99999999999999999 99999999999999998 77999 799999999999
Q ss_pred eccCCCcccCCccCCCCCC-CCcCCceEecCCCCcccccccccccccccccCCCeeEEcCCCCCCChhhhhHhccc--CC
Q 001998 668 VSLNGDLDYLPKGVERLTS-LRTLREFVVSSTGGKYCTKACKVEGLRQLNHLRGTLRIRGLGNVTDVEEAEKADLE--KK 744 (984)
Q Consensus 668 l~~~~~l~~~p~~i~~l~~-L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~--~~ 744 (984)
+++| .+..+|..+.++++ |+.|++..+..... ...+..+.. .+|+ .|.+.+..-....... ...+. .+
T Consensus 602 Ls~N-~l~~lp~~l~~l~~~L~~L~Ls~N~L~~l-----p~~~~~~~~-~~L~-~L~Ls~N~l~g~ip~l-~~~l~~~~~ 672 (876)
T 4ecn_A 602 LDYN-QIEEIPEDFCAFTDQVEGLGFSHNKLKYI-----PNIFNAKSV-YVMG-SVDFSYNKIGSEGRNI-SCSMDDYKG 672 (876)
T ss_dssp CCSS-CCSCCCTTSCEECTTCCEEECCSSCCCSC-----CSCCCTTCS-SCEE-EEECCSSCTTTTSSSC-SSCTTTCCC
T ss_pred CcCC-ccccchHHHhhccccCCEEECcCCCCCcC-----chhhhcccc-CCCC-EEECcCCcCCCccccc-hhhhccccC
Confidence 9999 45689999999999 99999877654421 111111110 1122 3333332111100000 01111 33
Q ss_pred CCCCeEEEEEcCCcccccCcCchhhccHHHHhhc-CCCCCCCCeEEEeecCCCCCCCchhhc--------CCCCcEEEEe
Q 001998 745 KNIVGLELRFDKEEAATEGINEENEINHQAISEA-LRPPPDLEALEIMHYKGQTAFPSWIVS--------LNKLKKLKLS 815 (984)
Q Consensus 745 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~L~~L~L~~~~~~~~lp~~l~~--------l~~L~~L~L~ 815 (984)
.+|+.|+|+.|..... +.. +..+++|+.|+|++|.+.. +|.++.. +++|+.|+|+
T Consensus 673 ~~L~~L~Ls~N~L~~l---------------p~~~~~~l~~L~~L~Ls~N~L~~-ip~~~~~~~~~~l~nl~~L~~L~Ls 736 (876)
T 4ecn_A 673 INASTVTLSYNEIQKF---------------PTELFATGSPISTIILSNNLMTS-IPENSLKPKDGNYKNTYLLTTIDLR 736 (876)
T ss_dssp CCEEEEECCSSCCCSC---------------CHHHHHTTCCCSEEECCSCCCSC-CCTTSSSCTTSCCTTGGGCCEEECC
T ss_pred CCcCEEEccCCcCCcc---------------CHHHHccCCCCCEEECCCCcCCc-cChHHhccccccccccCCccEEECC
Confidence 4788888888776422 221 2356789999999988875 8876653 2389999999
Q ss_pred CcCCCCcCCC-CC--CCCCcceeeeccccCceEecceecCccCCCCCCCCCCccCcccccccccccccCC---CCccccc
Q 001998 816 SCCKCEIMPP-LG--ALPSLEILQIQRMESVKRVGVEFLGIESFNDYAPSSSLSLTAFPKLKELTLFHLD---GCEEWDF 889 (984)
Q Consensus 816 ~~~~~~~l~~-l~--~Lp~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~f~~L~~L~l~~l~---~l~~~~~ 889 (984)
+|... .+|. +. .+++|+.|+|++|. +..++. .+..+++|+.|.+.+++ ++.....
T Consensus 737 ~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~-L~~lp~-----------------~l~~L~~L~~L~Ls~N~~ls~N~l~~~ 797 (876)
T 4ecn_A 737 FNKLT-SLSDDFRATTLPYLSNMDVSYNC-FSSFPT-----------------QPLNSSQLKAFGIRHQRDAEGNRILRQ 797 (876)
T ss_dssp SSCCC-CCCGGGSTTTCTTCCEEECCSSC-CSSCCC-----------------GGGGCTTCCEEECCCCBCTTCCBCCCC
T ss_pred CCCCc-cchHHhhhccCCCcCEEEeCCCC-CCccch-----------------hhhcCCCCCEEECCCCCCccccccccc
Confidence 88666 4554 55 88999999998876 322322 14567888888887643 2333344
Q ss_pred CCCCcccCCcccEEeeecCcCCCCCCcCCCCCCCcCeEEeccCcch
Q 001998 890 GKEDVIIMPQLCYLDIRFCRKLKSLPDQLLQSSTLEKLRIIRAPIL 935 (984)
Q Consensus 890 ~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~i~~c~~l 935 (984)
.+..+..+++|+.|+|++|. +..+|..+. ++|+.|+|++||..
T Consensus 798 ip~~l~~L~~L~~L~Ls~N~-L~~Ip~~l~--~~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 798 WPTGITTCPSLIQLQIGSND-IRKVDEKLT--PQLYILDIADNPNI 840 (876)
T ss_dssp CCTTGGGCSSCCEEECCSSC-CCBCCSCCC--SSSCEEECCSCTTC
T ss_pred ChHHHhcCCCCCEEECCCCC-CCccCHhhc--CCCCEEECCCCCCC
Confidence 55567789999999999997 588998764 68999999999863
No 8
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.92 E-value=1.6e-25 Score=268.65 Aligned_cols=153 Identities=15% Similarity=0.141 Sum_probs=107.7
Q ss_pred cceeEEEEEecCcc-cccccccCCCceeEEeccCCCc-------------------------------------------
Q 001998 543 DKLRHSILVLDKVA-SFPVSIFNAKKLRSLLIHSPLE------------------------------------------- 578 (984)
Q Consensus 543 ~~~r~l~l~~~~~~-~~~~~~~~~~~Lr~L~l~~~~~------------------------------------------- 578 (984)
.++..+.+.++.+. .+|..+.++++|++|++++|..
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 46777887777664 5678889999999999988742
Q ss_pred ---------------------------------chhhhHHhhhccccccee-cCCCCcccc------------------C
Q 001998 579 ---------------------------------VLSPVLKGLFDHLTYGED-DGGENTVHD------------------I 606 (984)
Q Consensus 579 ---------------------------------~~~~~~~~~~~~l~~Lrv-~l~~~~i~~------------------l 606 (984)
.+.. +|..+.+++.|++ ++++|.+.. +
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~i 239 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK 239 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccC
Confidence 1112 3344667777777 777777766 7
Q ss_pred ccccc--ccCccceEEecCCCcc-ccchhhccCCcccEEecccccccc--cccccccCC------CCCCeEEeccCCCcc
Q 001998 607 PREIE--KLIHLRSLRLAGLKIE-ELPETCCKLFNLQTLDINECYRLK--RLPQGVGSL------VNLRHLVVSLNGDLD 675 (984)
Q Consensus 607 p~~i~--~L~~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~--~lP~~i~~L------~~L~~L~l~~~~~l~ 675 (984)
|..++ ++++|++|+|++|.+. .+|..++++++|++|++++|..++ .+|..++++ ++|++|++++| .+.
T Consensus 240 p~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~ 318 (636)
T 4eco_A 240 TEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLK 318 (636)
T ss_dssp TSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCS
T ss_pred chhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCC
Confidence 77777 7777777777777754 677777777777777777776233 477777665 77777777777 444
Q ss_pred cCCc--cCCCCCCCCcCCceEecC
Q 001998 676 YLPK--GVERLTSLRTLREFVVSS 697 (984)
Q Consensus 676 ~~p~--~i~~l~~L~~L~~~~~~~ 697 (984)
.+|. .++++++|+.|++..+..
T Consensus 319 ~ip~~~~l~~l~~L~~L~L~~N~l 342 (636)
T 4eco_A 319 TFPVETSLQKMKKLGMLECLYNQL 342 (636)
T ss_dssp SCCCHHHHTTCTTCCEEECCSCCC
T ss_pred ccCchhhhccCCCCCEEeCcCCcC
Confidence 7776 677777777777665443
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.92 E-value=6.7e-24 Score=254.94 Aligned_cols=388 Identities=16% Similarity=0.150 Sum_probs=231.5
Q ss_pred cccceeEEEEEecCcccccc-cccCCCceeEEeccCCCcchhhhHHhhhccccccee-cCCCCccccC-cccccccCccc
Q 001998 541 SQDKLRHSILVLDKVASFPV-SIFNAKKLRSLLIHSPLEVLSPVLKGLFDHLTYGED-DGGENTVHDI-PREIEKLIHLR 617 (984)
Q Consensus 541 ~~~~~r~l~l~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lrv-~l~~~~i~~l-p~~i~~L~~Lr 617 (984)
.+..++++.+..+.+..++. .+.++++|++|++.+|. +....+..|.+++.|++ ++++|.+..+ |..|+++++|+
T Consensus 30 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~--l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 107 (606)
T 3vq2_A 30 IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCE--IETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLE 107 (606)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC--CCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCC
T ss_pred CCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCc--ccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCC
Confidence 45789999999988876654 68899999999999986 44545667899999999 9999999887 78899999999
Q ss_pred eEEecCCCccccc-hhhccCCcccEEecccccccc--cccccccCCCCCCeEEeccCCCcccCCccCCCCCCCC----cC
Q 001998 618 SLRLAGLKIEELP-ETCCKLFNLQTLDINECYRLK--RLPQGVGSLVNLRHLVVSLNGDLDYLPKGVERLTSLR----TL 690 (984)
Q Consensus 618 ~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~--~lP~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~----~L 690 (984)
+|+|++|.+..+| ..++++++|++|++++|. +. .+|..++++++|++|++++|......|..++.+++|+ +|
T Consensus 108 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L 186 (606)
T 3vq2_A 108 NLVAVETKLASLESFPIGQLITLKKLNVAHNF-IHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSL 186 (606)
T ss_dssp EEECTTSCCCCSSSSCCTTCTTCCEEECCSSC-CCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEE
T ss_pred EEEccCCccccccccccCCCCCCCEEeCCCCc-ccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhcccccccee
Confidence 9999999998877 689999999999999998 55 5799999999999999999844333355566666665 34
Q ss_pred CceEecCCCCcccccccccccccccccCCCeeEEcCC---------------------------CC--------------
Q 001998 691 REFVVSSTGGKYCTKACKVEGLRQLNHLRGTLRIRGL---------------------------GN-------------- 729 (984)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~~---------------------------~~-------------- 729 (984)
++..+...... ...+.. .+ |+ .|.+.+. ..
T Consensus 187 ~l~~n~l~~~~----~~~~~~-~~---L~-~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~ 257 (606)
T 3vq2_A 187 DMSLNPIDFIQ----DQAFQG-IK---LH-ELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEG 257 (606)
T ss_dssp ECTTCCCCEEC----TTTTTT-CE---EE-EEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTT
T ss_pred eccCCCcceeC----cccccC-ce---ee-eeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhh
Confidence 44333222100 000000 01 11 1111111 00
Q ss_pred -------------CCChhhhhHhcccCCCCCCeEEEEEcCCcccccCcCchhhccHHHHhhcCCCCCCCCeEEEeecCCC
Q 001998 730 -------------VTDVEEAEKADLEKKKNIVGLELRFDKEEAATEGINEENEINHQAISEALRPPPDLEALEIMHYKGQ 796 (984)
Q Consensus 730 -------------~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~ 796 (984)
........ ..+..+++|+.|+++.+..... + .+..+++|++|++++|.+.
T Consensus 258 l~~l~l~~l~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~l---------------~-~l~~~~~L~~L~l~~n~l~ 320 (606)
T 3vq2_A 258 LCDVTIDEFRLTYTNDFSDDI-VKFHCLANVSAMSLAGVSIKYL---------------E-DVPKHFKWQSLSIIRCQLK 320 (606)
T ss_dssp GGGSEEEEEEECCCTTCCGGG-GSCGGGTTCSEEEEESCCCCCC---------------C-CCCTTCCCSEEEEESCCCS
T ss_pred hhhccHhheeccccccccccc-cccccCCCCCEEEecCccchhh---------------h-hccccccCCEEEcccccCc
Confidence 00000111 1145566777777776654321 2 5666778888888888874
Q ss_pred CCCCchhhcCCCCcEEEEeCcCCCCcCCCCCCCCCcceeeeccccCceEe---cceecCccCCCCCCCCC------CccC
Q 001998 797 TAFPSWIVSLNKLKKLKLSSCCKCEIMPPLGALPSLEILQIQRMESVKRV---GVEFLGIESFNDYAPSS------SLSL 867 (984)
Q Consensus 797 ~~lp~~l~~l~~L~~L~L~~~~~~~~l~~l~~Lp~L~~L~L~~~~~l~~~---~~~~~~~~~~~~l~~~~------~~~~ 867 (984)
. +|.+ .+++|+.|++++|...... .++.+++|++|++++|. +..+ +..+.....+..+.... +..+
T Consensus 321 ~-lp~~--~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~-l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 395 (606)
T 3vq2_A 321 Q-FPTL--DLPFLKSLTLTMNKGSISF-KKVALPSLSYLDLSRNA-LSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANF 395 (606)
T ss_dssp S-CCCC--CCSSCCEEEEESCSSCEEC-CCCCCTTCCEEECCSSC-EEEEEECCHHHHCCSCCCEEECCSCSEEEECCCC
T ss_pred c-cccC--CCCccceeeccCCcCccch-hhccCCCCCEEECcCCc-cCCCcchhhhhccCCcccEeECCCCccccchhhc
Confidence 4 7754 7888888888887554433 45667777777777664 3322 22222222221111110 1122
Q ss_pred cccccccccccccC----------------------CCCcccccCCCCcccCCcccEEeeecCcCCC-CCCcCCCCCCCc
Q 001998 868 TAFPKLKELTLFHL----------------------DGCEEWDFGKEDVIIMPQLCYLDIRFCRKLK-SLPDQLLQSSTL 924 (984)
Q Consensus 868 ~~f~~L~~L~l~~l----------------------~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~-~lp~~~~~l~~L 924 (984)
..+++|+.|.+.++ .++......+..+..+++|++|++++|.... .+|..+..+++|
T Consensus 396 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 475 (606)
T 3vq2_A 396 MGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNL 475 (606)
T ss_dssp TTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred cCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCC
Confidence 33344444444322 1111111222334455555555555554322 145555555666
Q ss_pred CeEEeccCcchHHhhccCCCCCccccccccceeecCceeeeee
Q 001998 925 EKLRIIRAPILRERFKKDTGEDWSKISHIRDIQIDHEYVQGFG 967 (984)
Q Consensus 925 ~~L~i~~c~~l~~~~~~~~~~~~~~i~~i~~l~~~~~~~~~~~ 967 (984)
++|++++|..-. .....+....++..+.+.+|.+.+..
T Consensus 476 ~~L~Ls~n~l~~-----~~~~~~~~l~~L~~L~Ls~N~l~~~~ 513 (606)
T 3vq2_A 476 TFLDLSKCQLEQ-----ISWGVFDTLHRLQLLNMSHNNLLFLD 513 (606)
T ss_dssp CEEECTTSCCCE-----ECTTTTTTCTTCCEEECCSSCCSCEE
T ss_pred CEEECCCCcCCc-----cChhhhcccccCCEEECCCCcCCCcC
Confidence 666666654311 11223445566666777777666653
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.91 E-value=7.2e-25 Score=263.05 Aligned_cols=342 Identities=14% Similarity=0.147 Sum_probs=247.8
Q ss_pred cccceeEEEEEecCccc------------------cccccc--CCCceeEEeccCCCcchhhhHHhhhccccccee-cCC
Q 001998 541 SQDKLRHSILVLDKVAS------------------FPVSIF--NAKKLRSLLIHSPLEVLSPVLKGLFDHLTYGED-DGG 599 (984)
Q Consensus 541 ~~~~~r~l~l~~~~~~~------------------~~~~~~--~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lrv-~l~ 599 (984)
...+++.+.+..+.+.. +|..+. ++++|++|++.+|. +...++..|.+++.|+. +++
T Consensus 204 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~--l~~~~p~~l~~l~~L~~L~Ls 281 (636)
T 4eco_A 204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCP--NLTKLPTFLKALPEMQLINVA 281 (636)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCT--TCSSCCTTTTTCSSCCEEECT
T ss_pred cccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCc--CCccChHHHhcCCCCCEEECc
Confidence 35678999999998887 888888 99999999999986 33335666889999999 999
Q ss_pred CCc-cc--cCccccccc------CccceEEecCCCccccch--hhccCCcccEEecccccccc-cccccccCCCCCCeEE
Q 001998 600 ENT-VH--DIPREIEKL------IHLRSLRLAGLKIEELPE--TCCKLFNLQTLDINECYRLK-RLPQGVGSLVNLRHLV 667 (984)
Q Consensus 600 ~~~-i~--~lp~~i~~L------~~Lr~L~L~~~~i~~lp~--~i~~L~~L~~L~L~~~~~l~-~lP~~i~~L~~L~~L~ 667 (984)
+|. +. .+|..++++ ++|++|+|++|.++.+|. .++++++|++|++++|. +. .+| .+..+++|++|+
T Consensus 282 ~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~-l~g~ip-~~~~l~~L~~L~ 359 (636)
T 4eco_A 282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQ-LEGKLP-AFGSEIKLASLN 359 (636)
T ss_dssp TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCC-CEEECC-CCEEEEEESEEE
T ss_pred CCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCc-Cccchh-hhCCCCCCCEEE
Confidence 998 77 489888887 999999999999999998 89999999999999998 55 899 899999999999
Q ss_pred eccCCCcccCCccCCCCCC-CCcCCceEecCCCCcccccccccccccccccCCCeeEEcCCCCCCChhhhhHhccc----
Q 001998 668 VSLNGDLDYLPKGVERLTS-LRTLREFVVSSTGGKYCTKACKVEGLRQLNHLRGTLRIRGLGNVTDVEEAEKADLE---- 742 (984)
Q Consensus 668 l~~~~~l~~~p~~i~~l~~-L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~---- 742 (984)
+++| .+..+|..++.+++ |+.|++..+..... ...+..+ .+.+|+ .|.+.+.. +. ......+.
T Consensus 360 L~~N-~l~~lp~~l~~l~~~L~~L~Ls~N~l~~l-----p~~~~~~-~l~~L~-~L~Ls~N~-l~---~~~p~~l~~~~~ 427 (636)
T 4eco_A 360 LAYN-QITEIPANFCGFTEQVENLSFAHNKLKYI-----PNIFDAK-SVSVMS-AIDFSYNE-IG---SVDGKNFDPLDP 427 (636)
T ss_dssp CCSS-EEEECCTTSEEECTTCCEEECCSSCCSSC-----CSCCCTT-CSSCEE-EEECCSSC-TT---TTTTCSSCTTCS
T ss_pred CCCC-ccccccHhhhhhcccCcEEEccCCcCccc-----chhhhhc-ccCccC-EEECcCCc-CC---Ccchhhhccccc
Confidence 9988 56688988999998 99998876654421 1111111 011222 34333321 11 11111222
Q ss_pred ---CCCCCCeEEEEEcCCcccccCcCchhhccHHHHhhcCCCCCCCCeEEEeecCCCCCCCchhhc--------CCCCcE
Q 001998 743 ---KKKNIVGLELRFDKEEAATEGINEENEINHQAISEALRPPPDLEALEIMHYKGQTAFPSWIVS--------LNKLKK 811 (984)
Q Consensus 743 ---~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~lp~~l~~--------l~~L~~ 811 (984)
.+.+|+.|+++.|.....+ ...+..+++|++|++++|.+.. +|..+.. +++|+.
T Consensus 428 ~~~~~~~L~~L~Ls~N~l~~lp--------------~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~~~~~~~~~l~~L~~ 492 (636)
T 4eco_A 428 TPFKGINVSSINLSNNQISKFP--------------KELFSTGSPLSSINLMGNMLTE-IPKNSLKDENENFKNTYLLTS 492 (636)
T ss_dssp SCCCCCCEEEEECCSSCCCSCC--------------THHHHTTCCCSEEECCSSCCSB-CCSSSSEETTEECTTGGGCCE
T ss_pred ccccCCCCCEEECcCCccCcCC--------------HHHHccCCCCCEEECCCCCCCC-cCHHHhccccccccccCCccE
Confidence 4568888888887664221 1112346788999999988885 7776543 238999
Q ss_pred EEEeCcCCCCcCCC-CC--CCCCcceeeeccccCceEecceecCccCCCCCCCCCCccCcccccccccccccCC---CCc
Q 001998 812 LKLSSCCKCEIMPP-LG--ALPSLEILQIQRMESVKRVGVEFLGIESFNDYAPSSSLSLTAFPKLKELTLFHLD---GCE 885 (984)
Q Consensus 812 L~L~~~~~~~~l~~-l~--~Lp~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~f~~L~~L~l~~l~---~l~ 885 (984)
|+|++|... .+|. +. .+++|+.|+|++|. +..++. .+..+++|+.|.+.++. ++.
T Consensus 493 L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~-l~~ip~-----------------~~~~l~~L~~L~Ls~N~~ls~N~ 553 (636)
T 4eco_A 493 IDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNS-FSKFPT-----------------QPLNSSTLKGFGIRNQRDAQGNR 553 (636)
T ss_dssp EECCSSCCC-BCCGGGSTTTCTTCCEEECCSSC-CSSCCC-----------------GGGGCSSCCEEECCSCBCTTCCB
T ss_pred EECcCCcCC-ccChhhhhccCCCcCEEECCCCC-CCCcCh-----------------hhhcCCCCCEEECCCCcccccCc
Confidence 999988766 4554 54 88999999998876 322332 14567888888886543 333
Q ss_pred ccccCCCCcccCCcccEEeeecCcCCCCCCcCCCCCCCcCeEEeccCcch
Q 001998 886 EWDFGKEDVIIMPQLCYLDIRFCRKLKSLPDQLLQSSTLEKLRIIRAPIL 935 (984)
Q Consensus 886 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~i~~c~~l 935 (984)
.....+..+..+++|++|+|++|. ++.+|..+. ++|+.|++++||..
T Consensus 554 l~~~~p~~l~~l~~L~~L~Ls~N~-l~~ip~~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 554 TLREWPEGITLCPSLTQLQIGSND-IRKVNEKIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp CCCCCCTTGGGCSSCCEEECCSSC-CCBCCSCCC--TTCCEEECCSCTTC
T ss_pred ccccChHHHhcCCCCCEEECCCCc-CCccCHhHh--CcCCEEECcCCCCc
Confidence 334445567789999999999997 588998765 79999999999863
No 11
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.91 E-value=1e-23 Score=253.39 Aligned_cols=365 Identities=11% Similarity=0.033 Sum_probs=224.8
Q ss_pred cccceeEEEEEecCcccc-cccccCCCceeEEeccCCCcchhhhHHhhhccccccee-cCCCCccccC-cccccccCccc
Q 001998 541 SQDKLRHSILVLDKVASF-PVSIFNAKKLRSLLIHSPLEVLSPVLKGLFDHLTYGED-DGGENTVHDI-PREIEKLIHLR 617 (984)
Q Consensus 541 ~~~~~r~l~l~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lrv-~l~~~~i~~l-p~~i~~L~~Lr 617 (984)
.+..++++.+..+.+..+ +..+.++++|++|++.+|. +....+..|.+++.|+. ++++|.+..+ |..++++++|+
T Consensus 31 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~--i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 108 (606)
T 3t6q_A 31 LPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQ--IYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALK 108 (606)
T ss_dssp SCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCC--CCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCC
T ss_pred CCCcCcEEEccCCccCcCChhHhccCccceEEECCCCc--cceeChhhccCccccCeeeCCCCcccccChhhhccccccc
Confidence 556889999999988876 5578899999999999987 44445677899999999 9999998775 77899999999
Q ss_pred eEEecCCCcccc-chhhccCCcccEEeccccccccccc-ccccCCCCCCeEEeccCCCcccCCccCCCCCCCC--cCCce
Q 001998 618 SLRLAGLKIEEL-PETCCKLFNLQTLDINECYRLKRLP-QGVGSLVNLRHLVVSLNGDLDYLPKGVERLTSLR--TLREF 693 (984)
Q Consensus 618 ~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lP-~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~--~L~~~ 693 (984)
+|++++|.++.+ |..++++++|++|++++|. +..++ ..+..+++|++|++++|......|..++.+++|+ .|++.
T Consensus 109 ~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~ 187 (606)
T 3t6q_A 109 HLFFIQTGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLN 187 (606)
T ss_dssp EEECTTSCCSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECT
T ss_pred EeeccccCcccCCcchhccCCcccEEECCCCc-ccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecC
Confidence 999999999987 6789999999999999998 66652 3355599999999999844333355688888888 45444
Q ss_pred EecCCCCccccccccccccccc---------------c-------------------------------cCCCeeEEcCC
Q 001998 694 VVSSTGGKYCTKACKVEGLRQL---------------N-------------------------------HLRGTLRIRGL 727 (984)
Q Consensus 694 ~~~~~~~~~~~~~~~l~~L~~L---------------~-------------------------------~L~~~L~i~~~ 727 (984)
.+....... .......++.| . .++ .+.+.+.
T Consensus 188 ~n~l~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~-~L~l~~n 264 (606)
T 3t6q_A 188 GNDIAGIEP--GAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVE-SINLQKH 264 (606)
T ss_dssp TCCCCEECT--TTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEE-EEECTTC
T ss_pred CCccCccCh--hHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCcee-EEEeecC
Confidence 433221100 00000000000 0 000 1111110
Q ss_pred CCCCChhhhhHhcccCCCCCCeEEEEEcCCcccccCcCchhhccHHHHhhcCCCCCCCCeEEEeecCCCCCCCchhhcCC
Q 001998 728 GNVTDVEEAEKADLEKKKNIVGLELRFDKEEAATEGINEENEINHQAISEALRPPPDLEALEIMHYKGQTAFPSWIVSLN 807 (984)
Q Consensus 728 ~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~lp~~l~~l~ 807 (984)
.+.......+..+++|+.|+++.|.... ++..+..+++|++|++++|.+....|..+..++
T Consensus 265 ----~l~~~~~~~~~~l~~L~~L~l~~n~l~~---------------lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 325 (606)
T 3t6q_A 265 ----YFFNISSNTFHCFSGLQELDLTATHLSE---------------LPSGLVGLSTLKKLVLSANKFENLCQISASNFP 325 (606)
T ss_dssp ----CCSSCCTTTTTTCTTCSEEECTTSCCSC---------------CCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCT
T ss_pred ----ccCccCHHHhccccCCCEEeccCCccCC---------------CChhhcccccCCEEECccCCcCcCchhhhhccC
Confidence 0111112235566778888877765532 344566667777777777776663455666777
Q ss_pred CCcEEEEeCcCCCCcCCC--CCCCCCcceeeeccccCceEe---cceecCccCCCCCCCC-------CCccCcccccccc
Q 001998 808 KLKKLKLSSCCKCEIMPP--LGALPSLEILQIQRMESVKRV---GVEFLGIESFNDYAPS-------SSLSLTAFPKLKE 875 (984)
Q Consensus 808 ~L~~L~L~~~~~~~~l~~--l~~Lp~L~~L~L~~~~~l~~~---~~~~~~~~~~~~l~~~-------~~~~~~~f~~L~~ 875 (984)
+|++|++++|.....+|. ++.+++|++|++++|. +..+ +..+.....+..+... .+..+..+++|+.
T Consensus 326 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 404 (606)
T 3t6q_A 326 SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD-IETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLEL 404 (606)
T ss_dssp TCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSC-CCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSE
T ss_pred cCCEEECCCCCcccccchhhhhccCcCCEEECCCCc-cccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCe
Confidence 777777777765544443 6677777777777665 2222 1222222222111111 1222334455555
Q ss_pred cccccCCCCcccccC-CCCcccCCcccEEeeecCcCCCCCCcCCCCCCCcCeEEeccCcc
Q 001998 876 LTLFHLDGCEEWDFG-KEDVIIMPQLCYLDIRFCRKLKSLPDQLLQSSTLEKLRIIRAPI 934 (984)
Q Consensus 876 L~l~~l~~l~~~~~~-~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~i~~c~~ 934 (984)
|.+.++. ..... +..+..+++|++|++++|......|..+..+++|++|++++|+.
T Consensus 405 L~l~~n~---l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 461 (606)
T 3t6q_A 405 LDLAFTR---LKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHF 461 (606)
T ss_dssp EECTTCC---EECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBC
T ss_pred EECCCCc---CCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCC
Confidence 5554431 11111 12244566777777777654334455556666777777776653
No 12
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.91 E-value=2.7e-24 Score=258.31 Aligned_cols=105 Identities=23% Similarity=0.266 Sum_probs=71.2
Q ss_pred ccceeEEEEEecCcccc-cccccCCCceeEEeccCCCcchhhhHHhhhccccccee-cCCCCccccCc-ccccccCccce
Q 001998 542 QDKLRHSILVLDKVASF-PVSIFNAKKLRSLLIHSPLEVLSPVLKGLFDHLTYGED-DGGENTVHDIP-REIEKLIHLRS 618 (984)
Q Consensus 542 ~~~~r~l~l~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lrv-~l~~~~i~~lp-~~i~~L~~Lr~ 618 (984)
..+++++.+..+.+..+ |..+.++++|++|++.+|. +....+..|.+++.|++ ++++|.+..+| ..++++.+|++
T Consensus 55 l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~--l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 132 (606)
T 3vq2_A 55 FSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP--IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKK 132 (606)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC--CCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCE
T ss_pred CccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCc--ccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCE
Confidence 45677777776666554 3456677777777777765 33333555677777777 77777776665 56777777777
Q ss_pred EEecCCCcc--ccchhhccCCcccEEeccccc
Q 001998 619 LRLAGLKIE--ELPETCCKLFNLQTLDINECY 648 (984)
Q Consensus 619 L~L~~~~i~--~lp~~i~~L~~L~~L~L~~~~ 648 (984)
|++++|.+. .+|..++++++|++|++++|.
T Consensus 133 L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~ 164 (606)
T 3vq2_A 133 LNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY 164 (606)
T ss_dssp EECCSSCCCCCCCCGGGGTCTTCCEEECCSSC
T ss_pred EeCCCCcccceechHhHhhcCCCCEEEccCCc
Confidence 777777766 467777777777777777765
No 13
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.91 E-value=7.1e-24 Score=258.17 Aligned_cols=337 Identities=16% Similarity=0.170 Sum_probs=196.2
Q ss_pred Hhhhccccccee-cCCCCcccc------------------Cccccc--ccCccceEEecCCCcc-ccchhhccCCcccEE
Q 001998 585 KGLFDHLTYGED-DGGENTVHD------------------IPREIE--KLIHLRSLRLAGLKIE-ELPETCCKLFNLQTL 642 (984)
Q Consensus 585 ~~~~~~l~~Lrv-~l~~~~i~~------------------lp~~i~--~L~~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L 642 (984)
|..|.+++.|+. ++++|.+.. +|..++ ++++|++|+|++|.+. .+|..+++|++|++|
T Consensus 441 P~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L 520 (876)
T 4ecn_A 441 SKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSL 520 (876)
T ss_dssp CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEE
T ss_pred hHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEE
Confidence 334666777777 777777666 777766 7777777777777643 667777777777777
Q ss_pred ecccccccc--cccccccCCC-------CCCeEEeccCCCcccCCc--cCCCCCCCCcCCceEecCCCCccccccccccc
Q 001998 643 DINECYRLK--RLPQGVGSLV-------NLRHLVVSLNGDLDYLPK--GVERLTSLRTLREFVVSSTGGKYCTKACKVEG 711 (984)
Q Consensus 643 ~L~~~~~l~--~lP~~i~~L~-------~L~~L~l~~~~~l~~~p~--~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~ 711 (984)
+|++|..++ .+|..+++++ +|++|++++| .+..+|. .++++++|+.|++..+.... +..
T Consensus 521 ~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~---------lp~ 590 (876)
T 4ecn_A 521 NIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEEFPASASLQKMVKLGLLDCVHNKVRH---------LEA 590 (876)
T ss_dssp ECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCCBCCCHHHHTTCTTCCEEECTTSCCCB---------CCC
T ss_pred ECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCCccCChhhhhcCCCCCEEECCCCCccc---------chh
Confidence 777775233 4666555554 7777777776 3446776 67777777777665544321 112
Q ss_pred ccccccCCCeeEEcCCCCCCChhhhhHhcccCCCC-CCeEEEEEcCCcccccCcCch-----------hhccHH---HHh
Q 001998 712 LRQLNHLRGTLRIRGLGNVTDVEEAEKADLEKKKN-IVGLELRFDKEEAATEGINEE-----------NEINHQ---AIS 776 (984)
Q Consensus 712 L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~~~~-L~~L~L~~~~~~~~~~~~~~~-----------~~~~~~---~~~ 776 (984)
+..+.+|+ .|.+.+.. +..+ ...+..+++ |+.|+|+.|.+...+..+... ...... .++
T Consensus 591 ~~~L~~L~-~L~Ls~N~-l~~l----p~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~ 664 (876)
T 4ecn_A 591 FGTNVKLT-DLKLDYNQ-IEEI----PEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNIS 664 (876)
T ss_dssp CCTTSEES-EEECCSSC-CSCC----CTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCS
T ss_pred hcCCCcce-EEECcCCc-cccc----hHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccch
Confidence 33333333 44443321 1111 122445555 777777766554221111000 000000 000
Q ss_pred hcCC--CCCCCCeEEEeecCCCCCCCchhh-cCCCCcEEEEeCcCCCCcCCC-CC--------CCCCcceeeeccccCce
Q 001998 777 EALR--PPPDLEALEIMHYKGQTAFPSWIV-SLNKLKKLKLSSCCKCEIMPP-LG--------ALPSLEILQIQRMESVK 844 (984)
Q Consensus 777 ~~l~--~~~~L~~L~L~~~~~~~~lp~~l~-~l~~L~~L~L~~~~~~~~l~~-l~--------~Lp~L~~L~L~~~~~l~ 844 (984)
..+. ..++|+.|++++|.+.. +|.++. .+++|+.|+|++|... .+|. +. ++++|+.|+|++|. +.
T Consensus 665 ~~l~~~~~~~L~~L~Ls~N~L~~-lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~-L~ 741 (876)
T 4ecn_A 665 CSMDDYKGINASTVTLSYNEIQK-FPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNK-LT 741 (876)
T ss_dssp SCTTTCCCCCEEEEECCSSCCCS-CCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSC-CC
T ss_pred hhhccccCCCcCEEEccCCcCCc-cCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCC-Cc
Confidence 1111 23467777777777765 776655 6777777777777555 3333 21 23377777777764 43
Q ss_pred EecceecCccCCCCCCCCCCccCcccccccccccccCCCCcccccCCCCcccCCcccEEeeec------CcCCCCCCcCC
Q 001998 845 RVGVEFLGIESFNDYAPSSSLSLTAFPKLKELTLFHLDGCEEWDFGKEDVIIMPQLCYLDIRF------CRKLKSLPDQL 918 (984)
Q Consensus 845 ~~~~~~~~~~~~~~l~~~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~------c~~l~~lp~~~ 918 (984)
.++..+. ...+++|+.|.++++ .+.. .+..+..+++|+.|+|++ |.....+|..+
T Consensus 742 ~lp~~l~---------------~~~l~~L~~L~Ls~N-~L~~---lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l 802 (876)
T 4ecn_A 742 SLSDDFR---------------ATTLPYLSNMDVSYN-CFSS---FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGI 802 (876)
T ss_dssp CCCGGGS---------------TTTCTTCCEEECCSS-CCSS---CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTG
T ss_pred cchHHhh---------------hccCCCcCEEEeCCC-CCCc---cchhhhcCCCCCEEECCCCCCcccccccccChHHH
Confidence 3332211 026778888888765 2222 244466788999998876 55566788888
Q ss_pred CCCCCcCeEEeccCcchHHhhccCCCCCccccccccceeecCceeeeee
Q 001998 919 LQSSTLEKLRIIRAPILRERFKKDTGEDWSKISHIRDIQIDHEYVQGFG 967 (984)
Q Consensus 919 ~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~i~~i~~l~~~~~~~~~~~ 967 (984)
..+++|+.|++++|+. . ..+..+. +.+..+++.+|.+..+.
T Consensus 803 ~~L~~L~~L~Ls~N~L-~-----~Ip~~l~--~~L~~LdLs~N~l~~i~ 843 (876)
T 4ecn_A 803 TTCPSLIQLQIGSNDI-R-----KVDEKLT--PQLYILDIADNPNISID 843 (876)
T ss_dssp GGCSSCCEEECCSSCC-C-----BCCSCCC--SSSCEEECCSCTTCEEE
T ss_pred hcCCCCCEEECCCCCC-C-----ccCHhhc--CCCCEEECCCCCCCccC
Confidence 8888999999998875 2 1112222 47778888888777764
No 14
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.91 E-value=3.7e-23 Score=239.32 Aligned_cols=337 Identities=17% Similarity=0.235 Sum_probs=194.1
Q ss_pred ccceeEEEEEecCcccccccccCCCceeEEeccCCCcchhhhHHhhhccccccee-cCCCCccccCcccccccCccceEE
Q 001998 542 QDKLRHSILVLDKVASFPVSIFNAKKLRSLLIHSPLEVLSPVLKGLFDHLTYGED-DGGENTVHDIPREIEKLIHLRSLR 620 (984)
Q Consensus 542 ~~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lrv-~l~~~~i~~lp~~i~~L~~Lr~L~ 620 (984)
...++.+.+..+.+..++ .+..+++|++|++.++. +.... . +.+++.|+. ++++|.+..++. ++++++|++|+
T Consensus 45 l~~l~~L~l~~~~i~~l~-~~~~l~~L~~L~Ls~n~--l~~~~-~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~ 118 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQ--LTDIT-P-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLT 118 (466)
T ss_dssp HHTCCEEECCSSCCCCCT-TGGGCTTCCEEECCSSC--CCCCG-G-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEE
T ss_pred hccccEEecCCCCCccCc-chhhhcCCCEEECCCCc--cCCch-h-hhccccCCEEECCCCccccChh-hcCCCCCCEEE
Confidence 356778888777776654 46778888888888876 33322 2 778888888 888888888777 88888888888
Q ss_pred ecCCCccccchhhccCCcccEEecccccccccccccccCCCCCCeEEeccCCCcccCCccCCCCCCCCcCCceEecCCCC
Q 001998 621 LAGLKIEELPETCCKLFNLQTLDINECYRLKRLPQGVGSLVNLRHLVVSLNGDLDYLPKGVERLTSLRTLREFVVSSTGG 700 (984)
Q Consensus 621 L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~ 700 (984)
+++|.++.+|. +.++++|++|++++|. +..+|. +..+++|++|+++++ +..++ .+.++++|+.|++..+....
T Consensus 119 L~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~~--~~~~~-~~~~l~~L~~L~l~~n~l~~- 191 (466)
T 1o6v_A 119 LFNNQITDIDP-LKNLTNLNRLELSSNT-ISDISA-LSGLTSLQQLSFGNQ--VTDLK-PLANLTTLERLDISSNKVSD- 191 (466)
T ss_dssp CCSSCCCCCGG-GTTCTTCSEEEEEEEE-ECCCGG-GTTCTTCSEEEEEES--CCCCG-GGTTCTTCCEEECCSSCCCC-
T ss_pred CCCCCCCCChH-HcCCCCCCEEECCCCc-cCCChh-hccCCcccEeecCCc--ccCch-hhccCCCCCEEECcCCcCCC-
Confidence 88888888875 8888888888888887 777764 788888888888643 33333 37777788877776554332
Q ss_pred cccccccccccccccccCCCeeEEcCCCCCCChhhhhHhcccCCCCCCeEEEEEcCCcccccCcCchhhccHHHHhhcCC
Q 001998 701 KYCTKACKVEGLRQLNHLRGTLRIRGLGNVTDVEEAEKADLEKKKNIVGLELRFDKEEAATEGINEENEINHQAISEALR 780 (984)
Q Consensus 701 ~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 780 (984)
+..+..+.+|+ .|.+.+.. +.... .+..+++|+.|+++.|..... ..+.
T Consensus 192 --------~~~l~~l~~L~-~L~l~~n~-l~~~~-----~~~~l~~L~~L~l~~n~l~~~----------------~~l~ 240 (466)
T 1o6v_A 192 --------ISVLAKLTNLE-SLIATNNQ-ISDIT-----PLGILTNLDELSLNGNQLKDI----------------GTLA 240 (466)
T ss_dssp --------CGGGGGCTTCS-EEECCSSC-CCCCG-----GGGGCTTCCEEECCSSCCCCC----------------GGGG
T ss_pred --------ChhhccCCCCC-EEEecCCc-ccccc-----cccccCCCCEEECCCCCcccc----------------hhhh
Confidence 12233444444 55544432 11111 134466677777766654321 1233
Q ss_pred CCCCCCeEEEeecCCCCCCCchhhcCCCCcEEEEeCcCCCCcCCCCCCCCCcceeeeccccCceEecceecCccCCCCCC
Q 001998 781 PPPDLEALEIMHYKGQTAFPSWIVSLNKLKKLKLSSCCKCEIMPPLGALPSLEILQIQRMESVKRVGVEFLGIESFNDYA 860 (984)
Q Consensus 781 ~~~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~l~~l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~ 860 (984)
.+++|++|++++|.+.+ ++. +..+++|+.|++++|.... ++.++.+++|+.|++++|. +..++. +.....+..+.
T Consensus 241 ~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~ 315 (466)
T 1o6v_A 241 SLTNLTDLDLANNQISN-LAP-LSGLTKLTELKLGANQISN-ISPLAGLTALTNLELNENQ-LEDISP-ISNLKNLTYLT 315 (466)
T ss_dssp GCTTCSEEECCSSCCCC-CGG-GTTCTTCSEEECCSSCCCC-CGGGTTCTTCSEEECCSSC-CSCCGG-GGGCTTCSEEE
T ss_pred cCCCCCEEECCCCcccc-chh-hhcCCCCCEEECCCCccCc-cccccCCCccCeEEcCCCc-ccCchh-hcCCCCCCEEE
Confidence 45566666666666554 333 4556666666666654433 2235556666666665554 222111 00000000000
Q ss_pred CC-----CCccCcccccccccccccCCCCcccccCCCCcccCCcccEEeeecCcCCCCCCcCCCCCCCcCeEEeccCcc
Q 001998 861 PS-----SSLSLTAFPKLKELTLFHLDGCEEWDFGKEDVIIMPQLCYLDIRFCRKLKSLPDQLLQSSTLEKLRIIRAPI 934 (984)
Q Consensus 861 ~~-----~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~i~~c~~ 934 (984)
.. .......+++|+.|.+.++ .+... ..+..+++|+.|++++|+ +..+++ +..+++|+.|++++|+.
T Consensus 316 L~~n~l~~~~~~~~l~~L~~L~l~~n-~l~~~----~~l~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~~ 387 (466)
T 1o6v_A 316 LYFNNISDISPVSSLTKLQRLFFYNN-KVSDV----SSLANLTNINWLSAGHNQ-ISDLTP-LANLTRITQLGLNDQAW 387 (466)
T ss_dssp CCSSCCSCCGGGGGCTTCCEEECCSS-CCCCC----GGGTTCTTCCEEECCSSC-CCBCGG-GTTCTTCCEEECCCEEE
T ss_pred CcCCcCCCchhhccCccCCEeECCCC-ccCCc----hhhccCCCCCEEeCCCCc-cCccch-hhcCCCCCEEeccCCcc
Confidence 00 0000234555555555544 12211 124456666666666664 333333 55566666666666653
No 15
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.90 E-value=2.6e-23 Score=253.32 Aligned_cols=155 Identities=19% Similarity=0.138 Sum_probs=126.1
Q ss_pred cccceeEEEEEecCcccccc-cccCCCceeEEeccCCCcchhhhHHhhhccccccee-cCCCCccccCcc-cccccCccc
Q 001998 541 SQDKLRHSILVLDKVASFPV-SIFNAKKLRSLLIHSPLEVLSPVLKGLFDHLTYGED-DGGENTVHDIPR-EIEKLIHLR 617 (984)
Q Consensus 541 ~~~~~r~l~l~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lrv-~l~~~~i~~lp~-~i~~L~~Lr 617 (984)
.+.+++++.+..+.+..++. .+.++++|++|++.++. +....+..|.+++.|++ ++++|.+..+|. .++++++|+
T Consensus 23 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~ 100 (680)
T 1ziw_A 23 LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT--ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLT 100 (680)
T ss_dssp SCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSC--CCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCS
T ss_pred cCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCc--cCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCC
Confidence 45789999999998877654 58899999999999886 44445677899999999 999999999986 599999999
Q ss_pred eEEecCCCccccc-hhhccCCcccEEecccccccccccccccCCCCCCeEEeccCCCcccCCcc-C--CCCCCCCcCCce
Q 001998 618 SLRLAGLKIEELP-ETCCKLFNLQTLDINECYRLKRLPQGVGSLVNLRHLVVSLNGDLDYLPKG-V--ERLTSLRTLREF 693 (984)
Q Consensus 618 ~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~~p~~-i--~~l~~L~~L~~~ 693 (984)
+|+|++|.+..+| ..++++++|++|++++|......|..+.++++|++|++++| .+..++.. + ..+++|+.|++.
T Consensus 101 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~L~ 179 (680)
T 1ziw_A 101 ELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN-KIQALKSEELDIFANSSLKKLELS 179 (680)
T ss_dssp EEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSS-CCCCBCHHHHGGGTTCEESEEECT
T ss_pred EEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCC-cccccCHHHhhccccccccEEECC
Confidence 9999999999887 57999999999999999844445677889999999999998 44555432 3 356888888877
Q ss_pred EecCC
Q 001998 694 VVSST 698 (984)
Q Consensus 694 ~~~~~ 698 (984)
.+...
T Consensus 180 ~n~l~ 184 (680)
T 1ziw_A 180 SNQIK 184 (680)
T ss_dssp TCCCC
T ss_pred CCccc
Confidence 65443
No 16
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.90 E-value=4.7e-23 Score=247.50 Aligned_cols=276 Identities=20% Similarity=0.207 Sum_probs=139.1
Q ss_pred ccceEEecCCCccccchh-hccCCcccEEecccccccccccccccCCCCCCeEEeccCCCcccCCccCCCCCCCCcCCce
Q 001998 615 HLRSLRLAGLKIEELPET-CCKLFNLQTLDINECYRLKRLPQGVGSLVNLRHLVVSLNGDLDYLPKGVERLTSLRTLREF 693 (984)
Q Consensus 615 ~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~ 693 (984)
+|++|++++|.+..+|.. ++++++|++|++++|. ++.+|..+.++++|++|++++|......|..++.+++|+.|++.
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 333 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATH-LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK 333 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSC-CSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECC
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCc-cCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECC
Confidence 455555555555555443 6666666666666665 55666666666666666666663322234456666666666655
Q ss_pred EecCCCCcccccccccccccccccCCCeeEEcCCCCCCChhhhhHhcccCCCCCCeEEEEEcCCcccccCcCchhhccHH
Q 001998 694 VVSSTGGKYCTKACKVEGLRQLNHLRGTLRIRGLGNVTDVEEAEKADLEKKKNIVGLELRFDKEEAATEGINEENEINHQ 773 (984)
Q Consensus 694 ~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~ 773 (984)
.+.... ......+..+.+|+ .|.+.+.. +.... .....+..+++|+.|+++.|.....
T Consensus 334 ~n~~~~------~~~~~~~~~l~~L~-~L~l~~n~-l~~~~-~~~~~~~~l~~L~~L~l~~n~l~~~------------- 391 (606)
T 3t6q_A 334 GNTKRL------ELGTGCLENLENLR-ELDLSHDD-IETSD-CCNLQLRNLSHLQSLNLSYNEPLSL------------- 391 (606)
T ss_dssp SCSSCC------BCCSSTTTTCTTCC-EEECCSSC-CCEEE-ESTTTTTTCTTCCEEECCSCSCEEE-------------
T ss_pred CCCccc------ccchhhhhccCcCC-EEECCCCc-ccccc-CcchhcccCCCCCEEECCCCcCCcC-------------
Confidence 443321 00011122333333 34333221 11100 0012345566667777666654322
Q ss_pred HHhhcCCCCCCCCeEEEeecCCCCCCC-chhhcCCCCcEEEEeCcCCCCcCCC-CCCCCCcceeeeccccCce-Eeccee
Q 001998 774 AISEALRPPPDLEALEIMHYKGQTAFP-SWIVSLNKLKKLKLSSCCKCEIMPP-LGALPSLEILQIQRMESVK-RVGVEF 850 (984)
Q Consensus 774 ~~~~~l~~~~~L~~L~L~~~~~~~~lp-~~l~~l~~L~~L~L~~~~~~~~l~~-l~~Lp~L~~L~L~~~~~l~-~~~~~~ 850 (984)
.+..+..+++|++|++++|.+.+..| .++..+++|+.|++++|......|. ++.+++|++|++++|.... .++.
T Consensus 392 -~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-- 468 (606)
T 3t6q_A 392 -KTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQK-- 468 (606)
T ss_dssp -CTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECS--
T ss_pred -CHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCcccccc--
Confidence 23445556667777777666554223 3356667777777776665544443 6667777777776665211 0000
Q ss_pred cCccCCCCCCCCCCccCcccccccccccccCCCCcccccCCCCcccCCcccEEeeecCcCCCCCCcCCCCCCCcCeEEec
Q 001998 851 LGIESFNDYAPSSSLSLTAFPKLKELTLFHLDGCEEWDFGKEDVIIMPQLCYLDIRFCRKLKSLPDQLLQSSTLEKLRII 930 (984)
Q Consensus 851 ~~~~~~~~l~~~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~i~ 930 (984)
+..+..+++|+.|.+.++ ....+.+..+..+++|++|++++|......|..+..+++| .|+++
T Consensus 469 -------------~~~~~~l~~L~~L~Ls~n---~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~ 531 (606)
T 3t6q_A 469 -------------TNSLQTLGRLEILVLSFC---DLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLA 531 (606)
T ss_dssp -------------SCGGGGCTTCCEEECTTS---CCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECC
T ss_pred -------------chhhccCCCccEEECCCC---ccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECc
Confidence 000233444444444433 2222333334455666666666665333344555555555 56666
Q ss_pred cCc
Q 001998 931 RAP 933 (984)
Q Consensus 931 ~c~ 933 (984)
+|.
T Consensus 532 ~N~ 534 (606)
T 3t6q_A 532 SNH 534 (606)
T ss_dssp SSC
T ss_pred CCc
Confidence 554
No 17
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.90 E-value=1.8e-23 Score=249.48 Aligned_cols=144 Identities=17% Similarity=0.200 Sum_probs=119.3
Q ss_pred cccceeEEEEEecCccccc-ccccCCCceeEEeccCCCcchhhhHHhhhccccccee-cCCCCccccCc-ccccccCccc
Q 001998 541 SQDKLRHSILVLDKVASFP-VSIFNAKKLRSLLIHSPLEVLSPVLKGLFDHLTYGED-DGGENTVHDIP-REIEKLIHLR 617 (984)
Q Consensus 541 ~~~~~r~l~l~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lrv-~l~~~~i~~lp-~~i~~L~~Lr 617 (984)
.+..++++.+..+.+..++ ..+.++++|++|++.+|. +....+..|.+++.|++ ++++|.+..+| ..++++.+|+
T Consensus 26 l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~--i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (570)
T 2z63_A 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE--IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 103 (570)
T ss_dssp SCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCC--CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCC
T ss_pred ccccccEEEccCCccCccChhHhhCCCCceEEECCCCc--CCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccc
Confidence 4567899999988887654 468899999999999986 44445667899999999 99999988876 6799999999
Q ss_pred eEEecCCCccccch-hhccCCcccEEeccccccccc--ccccccCCCCCCeEEeccCCCcccCCccCCCCCCC
Q 001998 618 SLRLAGLKIEELPE-TCCKLFNLQTLDINECYRLKR--LPQGVGSLVNLRHLVVSLNGDLDYLPKGVERLTSL 687 (984)
Q Consensus 618 ~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~--lP~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L 687 (984)
+|++++|.++.+|. .++++++|++|++++|. +.. +|..++++++|++|++++|......|..++.+++|
T Consensus 104 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 175 (570)
T 2z63_A 104 KLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175 (570)
T ss_dssp EEECTTSCCCCSTTCSCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTC
T ss_pred cccccccccccCCCccccccccccEEecCCCc-cceecChhhhcccCCCCEEeCcCCccceecHHHccchhcc
Confidence 99999999998886 79999999999999998 554 78999999999999999984433334557777777
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.90 E-value=4.4e-23 Score=242.83 Aligned_cols=125 Identities=17% Similarity=0.186 Sum_probs=95.0
Q ss_pred ccceeEEEEEecCccccc-ccccCCCceeEEeccCCCcchhhhHHhhhccccccee-cCCCCccccCcccccccCccceE
Q 001998 542 QDKLRHSILVLDKVASFP-VSIFNAKKLRSLLIHSPLEVLSPVLKGLFDHLTYGED-DGGENTVHDIPREIEKLIHLRSL 619 (984)
Q Consensus 542 ~~~~r~l~l~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lrv-~l~~~~i~~lp~~i~~L~~Lr~L 619 (984)
+.+++++.+..+.+..++ ..+..+++|++|++.+|. +....+..|.+++.|++ ++++|.+..+|.. .+++|++|
T Consensus 20 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L 95 (520)
T 2z7x_B 20 SQKTTILNISQNYISELWTSDILSLSKLRILIISHNR--IQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHL 95 (520)
T ss_dssp CTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSC--CCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEE
T ss_pred cccccEEECCCCcccccChhhccccccccEEecCCCc--cCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEE
Confidence 367888888888777654 467788888888888886 44444566788888888 8888888888876 78888888
Q ss_pred EecCCCccc--cchhhccCCcccEEecccccccccccccccCCCCC--CeEEeccCCC
Q 001998 620 RLAGLKIEE--LPETCCKLFNLQTLDINECYRLKRLPQGVGSLVNL--RHLVVSLNGD 673 (984)
Q Consensus 620 ~L~~~~i~~--lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L--~~L~l~~~~~ 673 (984)
+|++|.++. +|..++++++|++|++++|. +.. ..+..+++| ++|++++|..
T Consensus 96 ~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 96 DLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEK--SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp ECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCG--GGGGGGTTSCEEEEEEEECTT
T ss_pred eccCCccccccchhhhccCCcceEEEecCcc-cch--hhccccccceeeEEEeecccc
Confidence 888888875 56788888888888888877 444 346667777 8888887744
No 19
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.90 E-value=9.3e-23 Score=237.14 Aligned_cols=307 Identities=21% Similarity=0.207 Sum_probs=182.8
Q ss_pred EecCcccccccccCCCceeEEeccCCCcchhhhHHhhhccccccee-cCCCCccccC-cccccccCccceEEecCCCccc
Q 001998 551 VLDKVASFPVSIFNAKKLRSLLIHSPLEVLSPVLKGLFDHLTYGED-DGGENTVHDI-PREIEKLIHLRSLRLAGLKIEE 628 (984)
Q Consensus 551 ~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lrv-~l~~~~i~~l-p~~i~~L~~Lr~L~L~~~~i~~ 628 (984)
....+..+|..+. ++++.|++.++. +....+..|.+++.|+. ++++|.+..+ |..++++++|++|+|++|.++.
T Consensus 19 ~~~~l~~ip~~~~--~~l~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~ 94 (477)
T 2id5_A 19 HRKRFVAVPEGIP--TETRLLDLGKNR--IKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKL 94 (477)
T ss_dssp CSCCCSSCCSCCC--TTCSEEECCSSC--CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCS
T ss_pred CCCCcCcCCCCCC--CCCcEEECCCCc--cceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCc
Confidence 3344555565443 578888888876 44444556788888888 8888888776 6778888888888888888888
Q ss_pred cchh-hccCCcccEEecccccccccccccccCCCCCCeEEeccCCCcccCCccCCCCCCCCcCCceEecCCCCccccccc
Q 001998 629 LPET-CCKLFNLQTLDINECYRLKRLPQGVGSLVNLRHLVVSLNGDLDYLPKGVERLTSLRTLREFVVSSTGGKYCTKAC 707 (984)
Q Consensus 629 lp~~-i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~ 707 (984)
+|.. +.++++|++|+|++|......|..+.++++|++|++++|......|..+..+++|+.|++..+.....
T Consensus 95 ~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------- 167 (477)
T 2id5_A 95 IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI------- 167 (477)
T ss_dssp CCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSC-------
T ss_pred cCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCccc-------
Confidence 8764 67888888888888874344566788888888888888844333455677888888887654432210
Q ss_pred ccccccccccCCCeeEEcCCCCCCChhhhhHhcccCCCCCCeEEEEEcCCcccccCcCchhhccHHHHhhcCCCCCCCCe
Q 001998 708 KVEGLRQLNHLRGTLRIRGLGNVTDVEEAEKADLEKKKNIVGLELRFDKEEAATEGINEENEINHQAISEALRPPPDLEA 787 (984)
Q Consensus 708 ~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~ 787 (984)
....+..+++|+.|+++.|..... ....+..+++|++
T Consensus 168 -----------------------------~~~~l~~l~~L~~L~l~~n~i~~~--------------~~~~~~~l~~L~~ 204 (477)
T 2id5_A 168 -----------------------------PTEALSHLHGLIVLRLRHLNINAI--------------RDYSFKRLYRLKV 204 (477)
T ss_dssp -----------------------------CHHHHTTCTTCCEEEEESCCCCEE--------------CTTCSCSCTTCCE
T ss_pred -----------------------------ChhHhcccCCCcEEeCCCCcCcEe--------------ChhhcccCcccce
Confidence 011233445555555555544321 1123445556666
Q ss_pred EEEeecCCCCCCCchhhcCCCCcEEEEeCcCCCCcCC--CCCCCCCcceeeeccccCceEecceecCccCCCCCCCCCCc
Q 001998 788 LEIMHYKGQTAFPSWIVSLNKLKKLKLSSCCKCEIMP--PLGALPSLEILQIQRMESVKRVGVEFLGIESFNDYAPSSSL 865 (984)
Q Consensus 788 L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~l~--~l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~~~~~ 865 (984)
|++++|...+.+|..+....+|++|+|++|.... +| .++.+++|+.|+|++|. +..++...
T Consensus 205 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~--------------- 267 (477)
T 2id5_A 205 LEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA-VPYLAVRHLVYLRFLNLSYNP-ISTIEGSM--------------- 267 (477)
T ss_dssp EEEECCTTCCEECTTTTTTCCCSEEEEESSCCCS-CCHHHHTTCTTCCEEECCSSC-CCEECTTS---------------
T ss_pred eeCCCCccccccCcccccCccccEEECcCCcccc-cCHHHhcCccccCeeECCCCc-CCccChhh---------------
Confidence 6666655554455554444566666666664332 33 15556666666666554 33322110
Q ss_pred cCcccccccccccccCCCCcccccCCCCcccCCcccEEeeecCcCCCCCCcC-CCCCCCcCeEEeccCc
Q 001998 866 SLTAFPKLKELTLFHLDGCEEWDFGKEDVIIMPQLCYLDIRFCRKLKSLPDQ-LLQSSTLEKLRIIRAP 933 (984)
Q Consensus 866 ~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L~i~~c~ 933 (984)
+..+++|+.|.+.++ ....+.+..+..+++|+.|+|++|. +..+|.. +..+++|+.|++++||
T Consensus 268 -~~~l~~L~~L~L~~n---~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 268 -LHELLRLQEIQLVGG---QLAVVEPYAFRGLNYLRVLNVSGNQ-LTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp -CTTCTTCCEEECCSS---CCSEECTTTBTTCTTCCEEECCSSC-CSCCCGGGBSCGGGCCEEECCSSC
T ss_pred -ccccccCCEEECCCC---ccceECHHHhcCcccCCEEECCCCc-CceeCHhHcCCCcccCEEEccCCC
Confidence 223444555544432 2222333344556666666666663 4455442 3455666666666655
No 20
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.89 E-value=1.6e-22 Score=239.98 Aligned_cols=142 Identities=13% Similarity=0.081 Sum_probs=104.6
Q ss_pred eEEEEEecCcccccccccCCCceeEEeccCCCcchhhhHHhhhccccccee-cCCCCccccC-cccccccCccceEEecC
Q 001998 546 RHSILVLDKVASFPVSIFNAKKLRSLLIHSPLEVLSPVLKGLFDHLTYGED-DGGENTVHDI-PREIEKLIHLRSLRLAG 623 (984)
Q Consensus 546 r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lrv-~l~~~~i~~l-p~~i~~L~~Lr~L~L~~ 623 (984)
+++.+.++.+..+|..+. ++|+.|++.+|. +....+..|.+++.|++ ++++|.+..+ |..++++++|++|+|++
T Consensus 34 ~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~--i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 109 (562)
T 3a79_B 34 SMVDYSNRNLTHVPKDLP--PRTKALSLSQNS--ISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109 (562)
T ss_dssp CEEECTTSCCCSCCTTSC--TTCCEEECCSSC--CCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred cEEEcCCCCCccCCCCCC--CCcCEEECCCCC--ccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence 667777777776676554 788888888886 44444556788888888 8888888776 56788888888888888
Q ss_pred CCccccchhhccCCcccEEecccccccccc--cccccCCCCCCeEEeccCCCcccCCccCCCCCCC--CcCCceEecC
Q 001998 624 LKIEELPETCCKLFNLQTLDINECYRLKRL--PQGVGSLVNLRHLVVSLNGDLDYLPKGVERLTSL--RTLREFVVSS 697 (984)
Q Consensus 624 ~~i~~lp~~i~~L~~L~~L~L~~~~~l~~l--P~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L--~~L~~~~~~~ 697 (984)
|.++.+|.. .+++|++|++++|. +..+ |..++++++|++|++++|. +.. ..+..+++| +.|++..+..
T Consensus 110 N~l~~lp~~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 110 NRLQNISCC--PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAK-FRQ--LDLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp SCCCEECSC--CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSB-CCT--TTTGGGTTSCEEEEEEEESSC
T ss_pred CcCCccCcc--ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCc-ccc--CchhhhhhceeeEEEeecccc
Confidence 888888877 78888888888887 6654 4678888888888888873 332 235555555 7777666544
No 21
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.89 E-value=3.1e-23 Score=239.81 Aligned_cols=367 Identities=16% Similarity=0.134 Sum_probs=235.4
Q ss_pred cccceeEEEEEecCcccc-cccccCCCceeEEeccCCCcchhhhHHhhhccccccee-cCCCCccccC-cccccccCccc
Q 001998 541 SQDKLRHSILVLDKVASF-PVSIFNAKKLRSLLIHSPLEVLSPVLKGLFDHLTYGED-DGGENTVHDI-PREIEKLIHLR 617 (984)
Q Consensus 541 ~~~~~r~l~l~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lrv-~l~~~~i~~l-p~~i~~L~~Lr 617 (984)
.+.+++++.+..+.+..+ +..+.++++|++|++.++... ....+..|.+++.|++ ++++|.+..+ |..++++++|+
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~-~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 106 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPG-LVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLE 106 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTT-CEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCC
T ss_pred CCCccCEEEecCCccCcCChhHhccCccccEEECcCCccc-ceECcccccccccCCEEeCCCCccCccChhhccCcccCC
Confidence 456788888888877765 556788888888888887521 1223455788888888 8888887765 67788888888
Q ss_pred eEEecCCCccc-cchh--hccCCcccEEecccccccccc-ccc-ccCCCCCCeEEeccCCCcccCCccCCCC--CCCCcC
Q 001998 618 SLRLAGLKIEE-LPET--CCKLFNLQTLDINECYRLKRL-PQG-VGSLVNLRHLVVSLNGDLDYLPKGVERL--TSLRTL 690 (984)
Q Consensus 618 ~L~L~~~~i~~-lp~~--i~~L~~L~~L~L~~~~~l~~l-P~~-i~~L~~L~~L~l~~~~~l~~~p~~i~~l--~~L~~L 690 (984)
+|+|++|.++. +|.. ++++++|++|++++|. +..+ |.. +.++++|++|++++|......|..+..+ .+|+.|
T Consensus 107 ~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L 185 (455)
T 3v47_A 107 VLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLL 185 (455)
T ss_dssp EEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEE
T ss_pred EEeCCCCCCCccccCcccccCcccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccc
Confidence 88888888874 4444 7888888888888887 5554 554 7888888888888885444445555554 455555
Q ss_pred CceEecCCCCccccc-ccccccccccccCCCeeEEcCCCCCCChhhhhHhcccCCCCCCeEEEEEcCCcccccCcCchhh
Q 001998 691 REFVVSSTGGKYCTK-ACKVEGLRQLNHLRGTLRIRGLGNVTDVEEAEKADLEKKKNIVGLELRFDKEEAATEGINEENE 769 (984)
Q Consensus 691 ~~~~~~~~~~~~~~~-~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~ 769 (984)
++..+.......... ......+..+.+|+ .|.+.+.. +...............+|+.|.++.+...........-..
T Consensus 186 ~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~-~L~Ls~n~-l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 263 (455)
T 3v47_A 186 RLSSITLQDMNEYWLGWEKCGNPFKNTSIT-TLDLSGNG-FKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKD 263 (455)
T ss_dssp ECTTCBCTTCSTTCTTHHHHCCTTTTCEEE-EEECTTSC-CCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCC
T ss_pred ccccCcccccchhhccccccccccccceee-eEecCCCc-ccccchhhhhccccccceeeEeeccccccccccchhhhcc
Confidence 554433322100000 00001111223333 44443321 1111111122223346777777765543211000000000
Q ss_pred ccHHHHhhcCCCCCCCCeEEEeecCCCCCCCchhhcCCCCcEEEEeCcCCCCcCC-CCCCCCCcceeeeccccCceEecc
Q 001998 770 INHQAISEALRPPPDLEALEIMHYKGQTAFPSWIVSLNKLKKLKLSSCCKCEIMP-PLGALPSLEILQIQRMESVKRVGV 848 (984)
Q Consensus 770 ~~~~~~~~~l~~~~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~l~-~l~~Lp~L~~L~L~~~~~l~~~~~ 848 (984)
.. ...... ...++|++|++++|.+.+..|.++..+++|+.|+|++|......| .++.+++|++|++++|. +..+..
T Consensus 264 ~~-~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~ 340 (455)
T 3v47_A 264 PD-NFTFKG-LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF-LGSIDS 340 (455)
T ss_dssp CC-TTTTGG-GTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCEECG
T ss_pred Cc-cccccc-ccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCc-cCCcCh
Confidence 00 000000 123689999999999988778889999999999999998777655 48999999999999986 444432
Q ss_pred eecCccCCCCCCCCCCccCcccccccccccccCCCCcccccCCCCcccCCcccEEeeecCcCCCCCCcC-CCCCCCcCeE
Q 001998 849 EFLGIESFNDYAPSSSLSLTAFPKLKELTLFHLDGCEEWDFGKEDVIIMPQLCYLDIRFCRKLKSLPDQ-LLQSSTLEKL 927 (984)
Q Consensus 849 ~~~~~~~~~~l~~~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L 927 (984)
.. +..+++|+.|.+.++ ....+.+..+..+++|++|++++|. +..+|.. +..+++|+.|
T Consensus 341 ~~----------------~~~l~~L~~L~Ls~N---~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L 400 (455)
T 3v47_A 341 RM----------------FENLDKLEVLDLSYN---HIRALGDQSFLGLPNLKELALDTNQ-LKSVPDGIFDRLTSLQKI 400 (455)
T ss_dssp GG----------------GTTCTTCCEEECCSS---CCCEECTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEE
T ss_pred hH----------------hcCcccCCEEECCCC---cccccChhhccccccccEEECCCCc-cccCCHhHhccCCcccEE
Confidence 11 346778888877765 2334445567789999999999996 7777764 4689999999
Q ss_pred EeccCcc
Q 001998 928 RIIRAPI 934 (984)
Q Consensus 928 ~i~~c~~ 934 (984)
++++||.
T Consensus 401 ~l~~N~l 407 (455)
T 3v47_A 401 WLHTNPW 407 (455)
T ss_dssp ECCSSCB
T ss_pred EccCCCc
Confidence 9999885
No 22
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.89 E-value=6.2e-23 Score=228.03 Aligned_cols=301 Identities=17% Similarity=0.230 Sum_probs=169.2
Q ss_pred cceeEEEEEecCcccccccccCCCceeEEeccCCCcchhhhHHhhhccccccee-cCCCCccccCcccccccCccceEEe
Q 001998 543 DKLRHSILVLDKVASFPVSIFNAKKLRSLLIHSPLEVLSPVLKGLFDHLTYGED-DGGENTVHDIPREIEKLIHLRSLRL 621 (984)
Q Consensus 543 ~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lrv-~l~~~~i~~lp~~i~~L~~Lr~L~L 621 (984)
.+++++.+.++.+..++ .+..+++|++|++.++. +... +. +..++.|+. ++++|.+..+| .+.++++|++|++
T Consensus 44 ~~L~~L~l~~~~i~~~~-~~~~~~~L~~L~l~~n~--i~~~-~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l 117 (347)
T 4fmz_A 44 ESITKLVVAGEKVASIQ-GIEYLTNLEYLNLNGNQ--ITDI-SP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYL 117 (347)
T ss_dssp TTCSEEECCSSCCCCCT-TGGGCTTCCEEECCSSC--CCCC-GG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEEC
T ss_pred ccccEEEEeCCccccch-hhhhcCCccEEEccCCc--cccc-hh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEEC
Confidence 34555555555444432 24445555555555543 1111 11 445555555 55555554443 2555555555555
Q ss_pred cCCCccccchhhccCCcccEEecccccccccccccccCCCCCCeEEeccCCCcccCCccCCCCCCCCcCCceEecCCCCc
Q 001998 622 AGLKIEELPETCCKLFNLQTLDINECYRLKRLPQGVGSLVNLRHLVVSLNGDLDYLPKGVERLTSLRTLREFVVSSTGGK 701 (984)
Q Consensus 622 ~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~ 701 (984)
++|.+..+|. +.++++|++|++++|..+..+|. +..+++|++|++++| .+..++. +..+++|+.|++.
T Consensus 118 ~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~-~~~~~~~-~~~l~~L~~L~l~-------- 185 (347)
T 4fmz_A 118 NEDNISDISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTES-KVKDVTP-IANLTDLYSLSLN-------- 185 (347)
T ss_dssp TTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GGGCTTCSEEECT--------
T ss_pred cCCcccCchh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCC-CcCCchh-hccCCCCCEEEcc--------
Confidence 5555554444 44555555555555543333333 455555555555544 2222222 3444444444332
Q ss_pred ccccccccccccccccCCCeeEEcCCCCCCChhhhhHhcccCCCCCCeEEEEEcCCcccccCcCchhhccHHHHhhcCCC
Q 001998 702 YCTKACKVEGLRQLNHLRGTLRIRGLGNVTDVEEAEKADLEKKKNIVGLELRFDKEEAATEGINEENEINHQAISEALRP 781 (984)
Q Consensus 702 ~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 781 (984)
++. +.... .+..+++|+.|+++.|..... ..+..
T Consensus 186 ------------------------~n~-l~~~~-----~~~~l~~L~~L~l~~n~l~~~----------------~~~~~ 219 (347)
T 4fmz_A 186 ------------------------YNQ-IEDIS-----PLASLTSLHYFTAYVNQITDI----------------TPVAN 219 (347)
T ss_dssp ------------------------TSC-CCCCG-----GGGGCTTCCEEECCSSCCCCC----------------GGGGG
T ss_pred ------------------------CCc-ccccc-----cccCCCccceeecccCCCCCC----------------chhhc
Confidence 211 11111 144566777777777655322 11455
Q ss_pred CCCCCeEEEeecCCCCCCCchhhcCCCCcEEEEeCcCCCCcCCCCCCCCCcceeeeccccCceEecceecCccCCCCCCC
Q 001998 782 PPDLEALEIMHYKGQTAFPSWIVSLNKLKKLKLSSCCKCEIMPPLGALPSLEILQIQRMESVKRVGVEFLGIESFNDYAP 861 (984)
Q Consensus 782 ~~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~l~~l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~ 861 (984)
+++|++|++++|.+.. +|. +..+++|++|++++|.... ++.+..+++|++|++++|. +..++.
T Consensus 220 ~~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~n~-l~~~~~------------- 282 (347)
T 4fmz_A 220 MTRLNSLKIGNNKITD-LSP-LANLSQLTWLEIGTNQISD-INAVKDLTKLKMLNVGSNQ-ISDISV------------- 282 (347)
T ss_dssp CTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-CGGGTTCTTCCEEECCSSC-CCCCGG-------------
T ss_pred CCcCCEEEccCCccCC-Ccc-hhcCCCCCEEECCCCccCC-ChhHhcCCCcCEEEccCCc-cCCChh-------------
Confidence 6788888888888776 665 7788888888888885443 4667888888888888875 333210
Q ss_pred CCCccCcccccccccccccCCCCcccccCCCCcccCCcccEEeeecCcCCCCCCcCCCCCCCcCeEEeccCcc
Q 001998 862 SSSLSLTAFPKLKELTLFHLDGCEEWDFGKEDVIIMPQLCYLDIRFCRKLKSLPDQLLQSSTLEKLRIIRAPI 934 (984)
Q Consensus 862 ~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~i~~c~~ 934 (984)
+..+++|+.|.+.++. +. ...+..+..+++|++|++++|+ +..+++ +..+++|++|++++|+.
T Consensus 283 -----~~~l~~L~~L~L~~n~-l~--~~~~~~l~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 283 -----LNNLSQLNSLFLNNNQ-LG--NEDMEVIGGLTNLTTLFLSQNH-ITDIRP-LASLSKMDSADFANQVI 345 (347)
T ss_dssp -----GGGCTTCSEEECCSSC-CC--GGGHHHHHTCTTCSEEECCSSS-CCCCGG-GGGCTTCSEESSSCC--
T ss_pred -----hcCCCCCCEEECcCCc-CC--CcChhHhhccccCCEEEccCCc-cccccC-hhhhhccceeehhhhcc
Confidence 3467777777777652 21 1222335568888888888886 556655 66788888888888874
No 23
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.89 E-value=1.2e-22 Score=229.49 Aligned_cols=305 Identities=17% Similarity=0.149 Sum_probs=207.4
Q ss_pred CCCceeEEeccCCCcchhhhHHhhhccccccee-cCCCCccccCcc-cccccCccceEEecCCCccccch-hhccCCccc
Q 001998 564 NAKKLRSLLIHSPLEVLSPVLKGLFDHLTYGED-DGGENTVHDIPR-EIEKLIHLRSLRLAGLKIEELPE-TCCKLFNLQ 640 (984)
Q Consensus 564 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lrv-~l~~~~i~~lp~-~i~~L~~Lr~L~L~~~~i~~lp~-~i~~L~~L~ 640 (984)
.+++++.|.+.++. +....+.+|..++.|++ ++++|.+..++. .++.+++|++|+|++|.++.+|+ .++++++|+
T Consensus 43 ~l~~l~~l~l~~~~--l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 43 TLNNQKIVTFKNST--MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 120 (390)
T ss_dssp GGCCCSEEEEESCE--ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred ccCCceEEEecCCc--hhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCC
Confidence 45667777777665 33434455667777777 777777766653 67777777777777777776644 467777777
Q ss_pred EEecccccccccccccc-cCCCCCCeEEeccCCCcccC-CccCCCCCCCCcCCceEecCCCCcccccccccccccccccC
Q 001998 641 TLDINECYRLKRLPQGV-GSLVNLRHLVVSLNGDLDYL-PKGVERLTSLRTLREFVVSSTGGKYCTKACKVEGLRQLNHL 718 (984)
Q Consensus 641 ~L~L~~~~~l~~lP~~i-~~L~~L~~L~l~~~~~l~~~-p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L 718 (984)
+|++++|. +..+|..+ .++++|++|++++|. +..+ |..++.+++|+.|++..+.... ..+..+ .+|
T Consensus 121 ~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~-------~~~~~l---~~L 188 (390)
T 3o6n_A 121 VLVLERND-LSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTH-------VDLSLI---PSL 188 (390)
T ss_dssp EEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSSCCSB-------CCGGGC---TTC
T ss_pred EEECCCCc-cCcCCHHHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCCcCCc-------cccccc---ccc
Confidence 77777776 66777653 677777777777773 3344 3446777777777766544332 112222 223
Q ss_pred CCeeEEcCCCCCCChhhhhHhcccCCCCCCeEEEEEcCCcccccCcCchhhccHHHHhhcCCCCCCCCeEEEeecCCCCC
Q 001998 719 RGTLRIRGLGNVTDVEEAEKADLEKKKNIVGLELRFDKEEAATEGINEENEINHQAISEALRPPPDLEALEIMHYKGQTA 798 (984)
Q Consensus 719 ~~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~ 798 (984)
+ .+.+... .+ ..+....+|+.|+++.|..... + ...+++|++|++++|.+..
T Consensus 189 ~-~L~l~~n-~l--------~~~~~~~~L~~L~l~~n~l~~~---------------~--~~~~~~L~~L~l~~n~l~~- 240 (390)
T 3o6n_A 189 F-HANVSYN-LL--------STLAIPIAVEELDASHNSINVV---------------R--GPVNVELTILKLQHNNLTD- 240 (390)
T ss_dssp S-EEECCSS-CC--------SEEECCSSCSEEECCSSCCCEE---------------E--CCCCSSCCEEECCSSCCCC-
T ss_pred c-eeecccc-cc--------cccCCCCcceEEECCCCeeeec---------------c--ccccccccEEECCCCCCcc-
Confidence 2 3333221 11 1223445788899888776432 1 1224789999999999876
Q ss_pred CCchhhcCCCCcEEEEeCcCCCCcCCC-CCCCCCcceeeeccccCceEecceecCccCCCCCCCCCCccCcccccccccc
Q 001998 799 FPSWIVSLNKLKKLKLSSCCKCEIMPP-LGALPSLEILQIQRMESVKRVGVEFLGIESFNDYAPSSSLSLTAFPKLKELT 877 (984)
Q Consensus 799 lp~~l~~l~~L~~L~L~~~~~~~~l~~-l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~f~~L~~L~ 877 (984)
. .++..+++|++|++++|......|. ++.+++|+.|++++|. +..++.. ...+|+|+.|.
T Consensus 241 ~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-----------------~~~l~~L~~L~ 301 (390)
T 3o6n_A 241 T-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLY-----------------GQPIPTLKVLD 301 (390)
T ss_dssp C-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSC-CCEEECS-----------------SSCCTTCCEEE
T ss_pred c-HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCc-CcccCcc-----------------cCCCCCCCEEE
Confidence 4 6788999999999999987765554 8899999999999986 5444321 24688999999
Q ss_pred cccCCCCcccccCCCCcccCCcccEEeeecCcCCCCCCcCCCCCCCcCeEEeccCcchH
Q 001998 878 LFHLDGCEEWDFGKEDVIIMPQLCYLDIRFCRKLKSLPDQLLQSSTLEKLRIIRAPILR 936 (984)
Q Consensus 878 l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~i~~c~~l~ 936 (984)
+.++ .+... +..+..+++|++|++++|+ +..+| +..+++|+.|++++||.-.
T Consensus 302 L~~n-~l~~~---~~~~~~l~~L~~L~L~~N~-i~~~~--~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 302 LSHN-HLLHV---ERNQPQFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp CCSS-CCCCC---GGGHHHHTTCSEEECCSSC-CCCCC--CCTTCCCSEEECCSSCEEH
T ss_pred CCCC-cceec---CccccccCcCCEEECCCCc-cceeC--chhhccCCEEEcCCCCccc
Confidence 9876 23322 2235578999999999997 67776 5678999999999998644
No 24
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.89 E-value=2.4e-22 Score=249.58 Aligned_cols=280 Identities=19% Similarity=0.174 Sum_probs=192.4
Q ss_pred cccceeEEEEEecCcccc-cccccCCCceeEEeccCCCcchhhhHHhhhccccccee-cCCCCccccC-cccccccCccc
Q 001998 541 SQDKLRHSILVLDKVASF-PVSIFNAKKLRSLLIHSPLEVLSPVLKGLFDHLTYGED-DGGENTVHDI-PREIEKLIHLR 617 (984)
Q Consensus 541 ~~~~~r~l~l~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lrv-~l~~~~i~~l-p~~i~~L~~Lr 617 (984)
.+.++++|.+..+.+..+ +..+.++++|++|++.+|.. ...+.+..|.+++.|++ ++++|.+..+ |..++++.+|+
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~-~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 100 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYT-PLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLF 100 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCC-CCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCC-ccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccC
Confidence 567899999999988765 56788999999999999842 22333667899999999 9999998876 88999999999
Q ss_pred eEEecCCCccc-cchh--hccCCcccEEecccccccccc--cccccCCCCCCeEEeccCCCcccCCccCCCC--CCCCcC
Q 001998 618 SLRLAGLKIEE-LPET--CCKLFNLQTLDINECYRLKRL--PQGVGSLVNLRHLVVSLNGDLDYLPKGVERL--TSLRTL 690 (984)
Q Consensus 618 ~L~L~~~~i~~-lp~~--i~~L~~L~~L~L~~~~~l~~l--P~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l--~~L~~L 690 (984)
+|+|++|.+.. +|.. +++|++|++|+|++|. +..+ |..++++++|++|++++|......|..+..+ ++|+.|
T Consensus 101 ~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L 179 (844)
T 3j0a_A 101 ELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFF 179 (844)
T ss_dssp CEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCC
T ss_pred EeeCcCCCCCcccccCccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceE
Confidence 99999999985 5655 8999999999999998 5554 3568999999999999985444455666666 777777
Q ss_pred CceEecCCCCcccccccccccccc-c--ccCCCeeEEcCC-----------------------------------CCCCC
Q 001998 691 REFVVSSTGGKYCTKACKVEGLRQ-L--NHLRGTLRIRGL-----------------------------------GNVTD 732 (984)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~l~~L~~-L--~~L~~~L~i~~~-----------------------------------~~~~~ 732 (984)
++..+........ .+..+.+ + ..|+ .|.+.+. .++..
T Consensus 180 ~L~~n~l~~~~~~----~~~~~~~~~~~~~L~-~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~ 254 (844)
T 3j0a_A 180 SLAANSLYSRVSV----DWGKCMNPFRNMVLE-ILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKD 254 (844)
T ss_dssp EECCSBSCCCCCC----CCCSSSCTTTTCCBS-EEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTT
T ss_pred ECCCCcccccccc----chhhcCCccccCcee-EEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCC
Confidence 7765544321100 0000000 0 0011 1111110 00000
Q ss_pred -----------------------hhhhhHhcccCCCCCCeEEEEEcCCcccccCcCchhhccHHHHhhcCCCCCCCCeEE
Q 001998 733 -----------------------VEEAEKADLEKKKNIVGLELRFDKEEAATEGINEENEINHQAISEALRPPPDLEALE 789 (984)
Q Consensus 733 -----------------------~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~ 789 (984)
+.......+..+++|+.|+|+.|..... .+..+..+++|++|+
T Consensus 255 ~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~--------------~~~~~~~l~~L~~L~ 320 (844)
T 3j0a_A 255 PDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKI--------------ADEAFYGLDNLQVLN 320 (844)
T ss_dssp GGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEE--------------CTTTTTTCSSCCEEE
T ss_pred CChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCC--------------ChHHhcCCCCCCEEE
Confidence 0011112244556666666666654322 234567778889999
Q ss_pred EeecCCCCCCCchhhcCCCCcEEEEeCcCCCCcCCC-CCCCCCcceeeecccc
Q 001998 790 IMHYKGQTAFPSWIVSLNKLKKLKLSSCCKCEIMPP-LGALPSLEILQIQRME 841 (984)
Q Consensus 790 L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~l~~-l~~Lp~L~~L~L~~~~ 841 (984)
+++|.+....|.++..+++|+.|++++|......+. ++.+++|++|++++|.
T Consensus 321 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 373 (844)
T 3j0a_A 321 LSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA 373 (844)
T ss_dssp EESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCC
T ss_pred CCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCC
Confidence 988888774577788888999999988866544443 7888899999998775
No 25
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.89 E-value=8.6e-23 Score=242.21 Aligned_cols=151 Identities=18% Similarity=0.235 Sum_probs=121.9
Q ss_pred cccceeEEEEEecCcccc-cccccCCCceeEEeccCCCcchhhhHHhhhccccccee-cCCCCccccCccc-ccccCccc
Q 001998 541 SQDKLRHSILVLDKVASF-PVSIFNAKKLRSLLIHSPLEVLSPVLKGLFDHLTYGED-DGGENTVHDIPRE-IEKLIHLR 617 (984)
Q Consensus 541 ~~~~~r~l~l~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lrv-~l~~~~i~~lp~~-i~~L~~Lr 617 (984)
.+..++++.+..+.+..+ +..+.++++|++|++.+|. +....+..|.+++.|++ ++++|.+..+|.. ++++++|+
T Consensus 24 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~--i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 101 (549)
T 2z81_A 24 LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR--INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLK 101 (549)
T ss_dssp CCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSC--CCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCC
T ss_pred CCCCccEEECcCCccCccChhhhhcCCcccEEECCCCC--cCccChhhccccccCCEEECCCCccCccCHHHhccCCCCc
Confidence 346789999998887765 4568899999999999987 44445567889999999 9999999888765 89999999
Q ss_pred eEEecCCCccc--cchhhccCCcccEEeccccccccccc-ccccCCCCCCeEEeccCCCcccCCccCCCCCCCCcCCce
Q 001998 618 SLRLAGLKIEE--LPETCCKLFNLQTLDINECYRLKRLP-QGVGSLVNLRHLVVSLNGDLDYLPKGVERLTSLRTLREF 693 (984)
Q Consensus 618 ~L~L~~~~i~~--lp~~i~~L~~L~~L~L~~~~~l~~lP-~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~ 693 (984)
+|+|++|.++. .|..++++++|++|++++|..+..+| ..+.++++|++|++++|......|..++.+++|+.|++.
T Consensus 102 ~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 180 (549)
T 2z81_A 102 YLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLH 180 (549)
T ss_dssp EEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEE
T ss_pred EEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecc
Confidence 99999999884 46789999999999999988677777 578999999999999886555567777766666655543
No 26
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.89 E-value=4.5e-22 Score=234.14 Aligned_cols=142 Identities=15% Similarity=0.090 Sum_probs=119.5
Q ss_pred eEEEEEecCcccccccccCCCceeEEeccCCCcchhhhHHhhhccccccee-cCCCCccccC-cccccccCccceEEecC
Q 001998 546 RHSILVLDKVASFPVSIFNAKKLRSLLIHSPLEVLSPVLKGLFDHLTYGED-DGGENTVHDI-PREIEKLIHLRSLRLAG 623 (984)
Q Consensus 546 r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lrv-~l~~~~i~~l-p~~i~~L~~Lr~L~L~~ 623 (984)
+++.+..+.+..+|..+. ++|+.|++.+|. +....+..|..++.|++ ++++|.+..+ |..++++++|++|+|++
T Consensus 3 ~~l~ls~n~l~~ip~~~~--~~L~~L~Ls~n~--i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS--QKTTILNISQNY--ISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78 (520)
T ss_dssp CEEECTTSCCSSCCCSCC--TTCSEEECCSSC--CCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred ceEecCCCCccccccccc--ccccEEECCCCc--ccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence 456677777777777665 899999999997 44545667899999999 9999999887 78899999999999999
Q ss_pred CCccccchhhccCCcccEEeccccccccc--ccccccCCCCCCeEEeccCCCcccCCccCCCCCCC--CcCCceEecC
Q 001998 624 LKIEELPETCCKLFNLQTLDINECYRLKR--LPQGVGSLVNLRHLVVSLNGDLDYLPKGVERLTSL--RTLREFVVSS 697 (984)
Q Consensus 624 ~~i~~lp~~i~~L~~L~~L~L~~~~~l~~--lP~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L--~~L~~~~~~~ 697 (984)
|.++.+|.. .+++|++|++++|. +.. +|..++++++|++|++++|. +.. ..+..+++| +.|++..+..
T Consensus 79 N~l~~lp~~--~l~~L~~L~L~~N~-l~~~~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 79 NKLVKISCH--PTVNLKHLDLSFNA-FDALPICKEFGNMSQLKFLGLSTTH-LEK--SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp SCCCEEECC--CCCCCSEEECCSSC-CSSCCCCGGGGGCTTCCEEEEEESS-CCG--GGGGGGTTSCEEEEEEEECTT
T ss_pred CceeecCcc--ccCCccEEeccCCc-cccccchhhhccCCcceEEEecCcc-cch--hhccccccceeeEEEeecccc
Confidence 999999988 89999999999998 554 67899999999999999984 333 356777888 8888877654
No 27
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.89 E-value=1.5e-22 Score=224.83 Aligned_cols=306 Identities=17% Similarity=0.229 Sum_probs=221.7
Q ss_pred ccCCCceeEEeccCCCcchhhhHHhhhccccccee-cCCCCccccCcccccccCccceEEecCCCccccchhhccCCccc
Q 001998 562 IFNAKKLRSLLIHSPLEVLSPVLKGLFDHLTYGED-DGGENTVHDIPREIEKLIHLRSLRLAGLKIEELPETCCKLFNLQ 640 (984)
Q Consensus 562 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lrv-~l~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~ 640 (984)
+..+++|+.|.+.++.. .. ++. +..++.|+. ++++|.+..+|. +.++++|++|++++|.++.+| .+.++++|+
T Consensus 40 ~~~l~~L~~L~l~~~~i--~~-~~~-~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~ 113 (347)
T 4fmz_A 40 QEELESITKLVVAGEKV--AS-IQG-IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLR 113 (347)
T ss_dssp HHHHTTCSEEECCSSCC--CC-CTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCS
T ss_pred chhcccccEEEEeCCcc--cc-chh-hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCC
Confidence 44677888888888762 22 222 677888888 888888888777 888888888888888888775 578888888
Q ss_pred EEecccccccccccccccCCCCCCeEEeccCCCcccCCccCCCCCCCCcCCceEecCCCCcccccccccccccccccCCC
Q 001998 641 TLDINECYRLKRLPQGVGSLVNLRHLVVSLNGDLDYLPKGVERLTSLRTLREFVVSSTGGKYCTKACKVEGLRQLNHLRG 720 (984)
Q Consensus 641 ~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~ 720 (984)
+|++++|. +..+|. +..+++|++|++++|.....++ .+..+++|+.|++..+....
T Consensus 114 ~L~l~~n~-i~~~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~--------------------- 169 (347)
T 4fmz_A 114 ELYLNEDN-ISDISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKD--------------------- 169 (347)
T ss_dssp EEECTTSC-CCCCGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCC---------------------
T ss_pred EEECcCCc-ccCchh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCC---------------------
Confidence 88888887 777776 7888888888888886555443 36777777777654322111
Q ss_pred eeEEcCCCCCCChhhhhHhcccCCCCCCeEEEEEcCCcccccCcCchhhccHHHHhhcCCCCCCCCeEEEeecCCCCCCC
Q 001998 721 TLRIRGLGNVTDVEEAEKADLEKKKNIVGLELRFDKEEAATEGINEENEINHQAISEALRPPPDLEALEIMHYKGQTAFP 800 (984)
Q Consensus 721 ~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~lp 800 (984)
. ..+..+++|+.|++++|..... ..+..+++|+.|++++|.+.. ++
T Consensus 170 ------------~-----~~~~~l~~L~~L~l~~n~l~~~----------------~~~~~l~~L~~L~l~~n~l~~-~~ 215 (347)
T 4fmz_A 170 ------------V-----TPIANLTDLYSLSLNYNQIEDI----------------SPLASLTSLHYFTAYVNQITD-IT 215 (347)
T ss_dssp ------------C-----GGGGGCTTCSEEECTTSCCCCC----------------GGGGGCTTCCEEECCSSCCCC-CG
T ss_pred ------------c-----hhhccCCCCCEEEccCCccccc----------------ccccCCCccceeecccCCCCC-Cc
Confidence 0 0145677899999988865432 115567899999999999887 55
Q ss_pred chhhcCCCCcEEEEeCcCCCCcCCCCCCCCCcceeeeccccCceEecceecCccCCCCCCCCCCccCccccccccccccc
Q 001998 801 SWIVSLNKLKKLKLSSCCKCEIMPPLGALPSLEILQIQRMESVKRVGVEFLGIESFNDYAPSSSLSLTAFPKLKELTLFH 880 (984)
Q Consensus 801 ~~l~~l~~L~~L~L~~~~~~~~l~~l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~f~~L~~L~l~~ 880 (984)
. +..+++|++|++++|.... ++.+..+++|++|++++|. +..++ .+..+++|+.|.+.+
T Consensus 216 ~-~~~~~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~n~-l~~~~------------------~~~~l~~L~~L~l~~ 274 (347)
T 4fmz_A 216 P-VANMTRLNSLKIGNNKITD-LSPLANLSQLTWLEIGTNQ-ISDIN------------------AVKDLTKLKMLNVGS 274 (347)
T ss_dssp G-GGGCTTCCEEECCSSCCCC-CGGGTTCTTCCEEECCSSC-CCCCG------------------GGTTCTTCCEEECCS
T ss_pred h-hhcCCcCCEEEccCCccCC-CcchhcCCCCCEEECCCCc-cCCCh------------------hHhcCCCcCEEEccC
Confidence 5 7899999999999996654 4448899999999999885 33321 135788999999887
Q ss_pred CCCCcccccCCCCcccCCcccEEeeecCcCCCCCCcCCCCCCCcCeEEeccCcchHHhhccCCCCCccccccccceeecC
Q 001998 881 LDGCEEWDFGKEDVIIMPQLCYLDIRFCRKLKSLPDQLLQSSTLEKLRIIRAPILRERFKKDTGEDWSKISHIRDIQIDH 960 (984)
Q Consensus 881 l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~i~~i~~l~~~~ 960 (984)
+ .+..+ ..+..+++|++|++++|+.....|..+..+++|++|++++|+.-. -..+.....+..+++.+
T Consensus 275 n-~l~~~----~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-------~~~~~~l~~L~~L~l~~ 342 (347)
T 4fmz_A 275 N-QISDI----SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD-------IRPLASLSKMDSADFAN 342 (347)
T ss_dssp S-CCCCC----GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCC-------CGGGGGCTTCSEESSSC
T ss_pred C-ccCCC----hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcccc-------ccChhhhhccceeehhh
Confidence 6 33333 235679999999999997555556667789999999999998521 11244566777778887
Q ss_pred ceee
Q 001998 961 EYVQ 964 (984)
Q Consensus 961 ~~~~ 964 (984)
|.++
T Consensus 343 N~i~ 346 (347)
T 4fmz_A 343 QVIK 346 (347)
T ss_dssp C---
T ss_pred hccc
Confidence 7664
No 28
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=1.9e-22 Score=240.74 Aligned_cols=306 Identities=17% Similarity=0.134 Sum_probs=218.2
Q ss_pred CCCceeEEeccCCCcchhhhHHhhhccccccee-cCCCCccccCc-ccccccCccceEEecCCCccccch-hhccCCccc
Q 001998 564 NAKKLRSLLIHSPLEVLSPVLKGLFDHLTYGED-DGGENTVHDIP-REIEKLIHLRSLRLAGLKIEELPE-TCCKLFNLQ 640 (984)
Q Consensus 564 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lrv-~l~~~~i~~lp-~~i~~L~~Lr~L~L~~~~i~~lp~-~i~~L~~L~ 640 (984)
.+++++.|.+.++. +...++.+|..++.|++ ++++|.+..+| ..++.+++|++|+|++|.++.+|+ .++++++|+
T Consensus 49 ~l~~l~~l~l~~~~--l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 126 (597)
T 3oja_B 49 TLNNQKIVTFKNST--MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 126 (597)
T ss_dssp GGCCCSEEEESSCE--ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cCCCceEEEeeCCC--CCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCC
Confidence 45677888887775 44445566777888888 88888887765 478888888888888888887765 457888888
Q ss_pred EEecccccccccccccc-cCCCCCCeEEeccCCCcccCCccCCCCCCCCcCCceEecCCCCcccccccccccccccccCC
Q 001998 641 TLDINECYRLKRLPQGV-GSLVNLRHLVVSLNGDLDYLPKGVERLTSLRTLREFVVSSTGGKYCTKACKVEGLRQLNHLR 719 (984)
Q Consensus 641 ~L~L~~~~~l~~lP~~i-~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~ 719 (984)
+|+|++|. +..+|..+ +++++|++|++++|......|..++.+++|+.|++..+.... ..+..+ .+|.
T Consensus 127 ~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-------~~~~~l---~~L~ 195 (597)
T 3oja_B 127 VLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-------VDLSLI---PSLF 195 (597)
T ss_dssp EEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB-------CCGGGC---TTCS
T ss_pred EEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC-------cChhhh---hhhh
Confidence 88888886 77777664 788888888888884333334457888888888776554432 112222 3333
Q ss_pred CeeEEcCCCCCCChhhhhHhcccCCCCCCeEEEEEcCCcccccCcCchhhccHHHHhhcCCCCCCCCeEEEeecCCCCCC
Q 001998 720 GTLRIRGLGNVTDVEEAEKADLEKKKNIVGLELRFDKEEAATEGINEENEINHQAISEALRPPPDLEALEIMHYKGQTAF 799 (984)
Q Consensus 720 ~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~l 799 (984)
.+.+.+. .+ ..+....+|+.|++++|..... +. ..+++|+.|++++|.+.+
T Consensus 196 -~L~l~~n-~l--------~~l~~~~~L~~L~ls~n~l~~~---------------~~--~~~~~L~~L~L~~n~l~~-- 246 (597)
T 3oja_B 196 -HANVSYN-LL--------STLAIPIAVEELDASHNSINVV---------------RG--PVNVELTILKLQHNNLTD-- 246 (597)
T ss_dssp -EEECCSS-CC--------SEEECCTTCSEEECCSSCCCEE---------------EC--SCCSCCCEEECCSSCCCC--
T ss_pred -hhhcccC-cc--------ccccCCchhheeeccCCccccc---------------cc--ccCCCCCEEECCCCCCCC--
Confidence 3333321 11 1234456789999988876433 11 123689999999999876
Q ss_pred CchhhcCCCCcEEEEeCcCCCCcCCC-CCCCCCcceeeeccccCceEecceecCccCCCCCCCCCCccCccccccccccc
Q 001998 800 PSWIVSLNKLKKLKLSSCCKCEIMPP-LGALPSLEILQIQRMESVKRVGVEFLGIESFNDYAPSSSLSLTAFPKLKELTL 878 (984)
Q Consensus 800 p~~l~~l~~L~~L~L~~~~~~~~l~~-l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~f~~L~~L~l 878 (984)
|.++..+++|+.|+|++|......|. ++.+++|+.|+|++|. +..++.. ...+|+|+.|.+
T Consensus 247 ~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~-----------------~~~l~~L~~L~L 308 (597)
T 3oja_B 247 TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLY-----------------GQPIPTLKVLDL 308 (597)
T ss_dssp CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSC-CCEEECS-----------------SSCCTTCCEEEC
T ss_pred ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCC-CCCCCcc-----------------cccCCCCcEEEC
Confidence 57889999999999999987776554 8999999999999986 5444321 346889999999
Q ss_pred ccCCCCcccccCCCCcccCCcccEEeeecCcCCCCCCcCCCCCCCcCeEEeccCcchH
Q 001998 879 FHLDGCEEWDFGKEDVIIMPQLCYLDIRFCRKLKSLPDQLLQSSTLEKLRIIRAPILR 936 (984)
Q Consensus 879 ~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~i~~c~~l~ 936 (984)
.++. +.. .+..+..+++|+.|+|++|+ +..+| +..+++|+.|++++||.-.
T Consensus 309 s~N~-l~~---i~~~~~~l~~L~~L~L~~N~-l~~~~--~~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 309 SHNH-LLH---VERNQPQFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp CSSC-CCC---CGGGHHHHTTCSEEECCSSC-CCCCC--CCTTCCCSEEECCSSCEEH
T ss_pred CCCC-CCc---cCcccccCCCCCEEECCCCC-CCCcC--hhhcCCCCEEEeeCCCCCC
Confidence 8763 222 23335678999999999997 66666 5568899999999998643
No 29
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.88 E-value=1.1e-21 Score=224.93 Aligned_cols=308 Identities=19% Similarity=0.175 Sum_probs=165.9
Q ss_pred ccCCCceeEEeccCCCcchhhhHHhhhccccccee-cCCCCccccCcccccccCccceEEecCCCccccchhhccCCccc
Q 001998 562 IFNAKKLRSLLIHSPLEVLSPVLKGLFDHLTYGED-DGGENTVHDIPREIEKLIHLRSLRLAGLKIEELPETCCKLFNLQ 640 (984)
Q Consensus 562 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lrv-~l~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~ 640 (984)
+.++++|++|++.++. +... + .+..++.|+. ++++|.+..+| ++.+++|++|++++|.++.+| ++++++|+
T Consensus 38 ~~~l~~L~~L~Ls~n~--l~~~-~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~ 109 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSS--ITDM-T-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLT 109 (457)
T ss_dssp HHHHTTCCEEECCSSC--CCCC-T-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCC
T ss_pred hhHcCCCCEEEccCCC--cccC-h-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCC
Confidence 3445555555555554 2121 2 2455555555 55555555554 555555555555555555553 55555555
Q ss_pred EEecccccccccccccccCCCCCCeEEeccCCCcccCCccCCCCCCCCcCCceEecCCCCcccccccccccccccccCCC
Q 001998 641 TLDINECYRLKRLPQGVGSLVNLRHLVVSLNGDLDYLPKGVERLTSLRTLREFVVSSTGGKYCTKACKVEGLRQLNHLRG 720 (984)
Q Consensus 641 ~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~ 720 (984)
+|++++|. ++.+| ++++++|++|++++| .+..+| ++.+++|+.|++..+...+ .. .+..+.+|+
T Consensus 110 ~L~L~~N~-l~~l~--~~~l~~L~~L~l~~N-~l~~l~--l~~l~~L~~L~l~~n~~~~------~~---~~~~l~~L~- 173 (457)
T 3bz5_A 110 YLNCDTNK-LTKLD--VSQNPLLTYLNCARN-TLTEID--VSHNTQLTELDCHLNKKIT------KL---DVTPQTQLT- 173 (457)
T ss_dssp EEECCSSC-CSCCC--CTTCTTCCEEECTTS-CCSCCC--CTTCTTCCEEECTTCSCCC------CC---CCTTCTTCC-
T ss_pred EEECCCCc-CCeec--CCCCCcCCEEECCCC-ccceec--cccCCcCCEEECCCCCccc------cc---ccccCCcCC-
Confidence 55555554 44444 555555555555555 333332 4555555555544332211 11 122222232
Q ss_pred eeEEcCCCCCCChhhhhHhcccCCCCCCeEEEEEcCCcccccCcCchhhccHHHHhhcCCCCCCCCeEEEeecCCCCCCC
Q 001998 721 TLRIRGLGNVTDVEEAEKADLEKKKNIVGLELRFDKEEAATEGINEENEINHQAISEALRPPPDLEALEIMHYKGQTAFP 800 (984)
Q Consensus 721 ~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~lp 800 (984)
.|.+.+. .+..+ .+..+++|+.|+++.|..... .+..+++|++|++++|.+.+ +|
T Consensus 174 ~L~ls~n-~l~~l------~l~~l~~L~~L~l~~N~l~~~-----------------~l~~l~~L~~L~Ls~N~l~~-ip 228 (457)
T 3bz5_A 174 TLDCSFN-KITEL------DVSQNKLLNRLNCDTNNITKL-----------------DLNQNIQLTFLDCSSNKLTE-ID 228 (457)
T ss_dssp EEECCSS-CCCCC------CCTTCTTCCEEECCSSCCSCC-----------------CCTTCTTCSEEECCSSCCSC-CC
T ss_pred EEECCCC-cccee------ccccCCCCCEEECcCCcCCee-----------------ccccCCCCCEEECcCCcccc-cC
Confidence 3333322 11111 145566777777777665321 25566788888888888777 77
Q ss_pred chhhcCCCCcEEEEeCcCCCCcCCCCCCCCCcceeeeccccCceEecceecCccCCCCCCCCCCccCccccccccccccc
Q 001998 801 SWIVSLNKLKKLKLSSCCKCEIMPPLGALPSLEILQIQRMESVKRVGVEFLGIESFNDYAPSSSLSLTAFPKLKELTLFH 880 (984)
Q Consensus 801 ~~l~~l~~L~~L~L~~~~~~~~l~~l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~f~~L~~L~l~~ 880 (984)
+..+++|+.|++++|..... | ++.+++|+.|+++.+. ++.+..... .... ....+.+++|+.|.+.+
T Consensus 229 --~~~l~~L~~L~l~~N~l~~~-~-~~~l~~L~~L~l~~n~-L~~L~l~~n------~~~~--~~~~~~l~~L~~L~Ls~ 295 (457)
T 3bz5_A 229 --VTPLTQLTYFDCSVNPLTEL-D-VSTLSKLTTLHCIQTD-LLEIDLTHN------TQLI--YFQAEGCRKIKELDVTH 295 (457)
T ss_dssp --CTTCTTCSEEECCSSCCSCC-C-CTTCTTCCEEECTTCC-CSCCCCTTC------TTCC--EEECTTCTTCCCCCCTT
T ss_pred --ccccCCCCEEEeeCCcCCCc-C-HHHCCCCCEEeccCCC-CCEEECCCC------ccCC--cccccccccCCEEECCC
Confidence 66778888888888765543 2 4556666666655432 322221100 0000 00124567777777777
Q ss_pred CCCCcccccC-----CCCcccCCcccEEeeecCcCCCCCCcCCCCCCCcCeEEeccCcc
Q 001998 881 LDGCEEWDFG-----KEDVIIMPQLCYLDIRFCRKLKSLPDQLLQSSTLEKLRIIRAPI 934 (984)
Q Consensus 881 l~~l~~~~~~-----~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~i~~c~~ 934 (984)
+..+..+... .-.+..+++|++|++++|. +..+| +..+++|+.|++++|..
T Consensus 296 n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~-l~~l~--l~~l~~L~~L~l~~N~l 351 (457)
T 3bz5_A 296 NTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTE-LTELD--VSHNTKLKSLSCVNAHI 351 (457)
T ss_dssp CTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCC-CSCCC--CTTCTTCSEEECCSSCC
T ss_pred CcccceeccCCCcceEechhhcccCCEEECCCCc-ccccc--cccCCcCcEEECCCCCC
Confidence 6544333211 1124456888888888875 66664 67788888888888763
No 30
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.88 E-value=1.1e-22 Score=242.51 Aligned_cols=128 Identities=22% Similarity=0.258 Sum_probs=93.4
Q ss_pred cccceeEEEEEecCccccc-ccccCCCceeEEeccCCCcchhhhHHhhhccccccee-cCCCCccccCcc-cccccCccc
Q 001998 541 SQDKLRHSILVLDKVASFP-VSIFNAKKLRSLLIHSPLEVLSPVLKGLFDHLTYGED-DGGENTVHDIPR-EIEKLIHLR 617 (984)
Q Consensus 541 ~~~~~r~l~l~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lrv-~l~~~~i~~lp~-~i~~L~~Lr 617 (984)
...+++++.+..+.+..++ ..+.++++|++|++.+|. +....+..|.+++.|+. ++++|.+..+|. .++++++|+
T Consensus 50 ~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~ 127 (570)
T 2z63_A 50 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP--IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127 (570)
T ss_dssp TCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC--CCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCC
T ss_pred CCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCc--CCccCHhhhcCccccccccccccccccCCCcccccccccc
Confidence 3457888888887776653 457788889999888886 43434566888888888 888888888765 588888888
Q ss_pred eEEecCCCccc--cchhhccCCcccEEecccccccccc-cccccCCCCC----CeEEeccC
Q 001998 618 SLRLAGLKIEE--LPETCCKLFNLQTLDINECYRLKRL-PQGVGSLVNL----RHLVVSLN 671 (984)
Q Consensus 618 ~L~L~~~~i~~--lp~~i~~L~~L~~L~L~~~~~l~~l-P~~i~~L~~L----~~L~l~~~ 671 (984)
+|++++|.+.. +|..++++++|++|++++|. +..+ |..+..+++| ++|++++|
T Consensus 128 ~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~~~~~L~l~~n 187 (570)
T 2z63_A 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (570)
T ss_dssp EEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC-CCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred EEecCCCccceecChhhhcccCCCCEEeCcCCc-cceecHHHccchhccchhhhhcccCCC
Confidence 88888888874 68888888888888888887 4443 3445555555 45555443
No 31
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.88 E-value=4.8e-22 Score=235.79 Aligned_cols=386 Identities=17% Similarity=0.144 Sum_probs=234.2
Q ss_pred cCcccccccccCCCceeEEeccCCCcchhhhHHhhhccccccee-cCCCCccccCc-ccccccCccceEEecCCCccccc
Q 001998 553 DKVASFPVSIFNAKKLRSLLIHSPLEVLSPVLKGLFDHLTYGED-DGGENTVHDIP-REIEKLIHLRSLRLAGLKIEELP 630 (984)
Q Consensus 553 ~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lrv-~l~~~~i~~lp-~~i~~L~~Lr~L~L~~~~i~~lp 630 (984)
+.+..+|..+. ++|++|++.++. +....+..|.+++.|++ ++++|.+..++ ..++++++|++|+|++|.++.+|
T Consensus 15 ~~l~~ip~~~~--~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 90 (549)
T 2z81_A 15 RSFTSIPSGLT--AAMKSLDLSFNK--ITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLS 90 (549)
T ss_dssp SCCSSCCSCCC--TTCCEEECCSSC--CCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCC
T ss_pred CccccccccCC--CCccEEECcCCc--cCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccC
Confidence 34555666554 789999999997 44444566899999999 99999998875 67999999999999999999887
Q ss_pred hh-hccCCcccEEeccccccccc--ccccccCCCCCCeEEeccCCCcccCC-ccCCCCCCCCcCCceEecCCCCcccccc
Q 001998 631 ET-CCKLFNLQTLDINECYRLKR--LPQGVGSLVNLRHLVVSLNGDLDYLP-KGVERLTSLRTLREFVVSSTGGKYCTKA 706 (984)
Q Consensus 631 ~~-i~~L~~L~~L~L~~~~~l~~--lP~~i~~L~~L~~L~l~~~~~l~~~p-~~i~~l~~L~~L~~~~~~~~~~~~~~~~ 706 (984)
.. ++++++|++|++++|. +.. .|..+.++++|++|++++|..+..+| ..++++++|+.|++..+....
T Consensus 91 ~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~------- 162 (549)
T 2z81_A 91 SSWFGPLSSLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN------- 162 (549)
T ss_dssp HHHHTTCTTCCEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE-------
T ss_pred HHHhccCCCCcEEECCCCc-ccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccc-------
Confidence 75 9999999999999998 663 57789999999999999997677776 469999999999998766542
Q ss_pred cccccccccccCCCeeEEcCCCCCCChhhhhHhcccCCCCCCeEEEEEcCCcccc---cCc----------Cchh----h
Q 001998 707 CKVEGLRQLNHLRGTLRIRGLGNVTDVEEAEKADLEKKKNIVGLELRFDKEEAAT---EGI----------NEEN----E 769 (984)
Q Consensus 707 ~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~---~~~----------~~~~----~ 769 (984)
.....+..+.+|+ .|.+..... ..... ..+..+++|+.|+++.|...... ... .... .
T Consensus 163 ~~~~~l~~l~~L~-~L~l~~n~~-~~~~~---~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 237 (549)
T 2z81_A 163 YQSQSLKSIRDIH-HLTLHLSES-AFLLE---IFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTD 237 (549)
T ss_dssp ECTTTTTTCSEEE-EEEEECSBS-TTHHH---HHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEH
T ss_pred cChhhhhccccCc-eEecccCcc-cccch---hhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccch
Confidence 1112233333333 444443221 11111 11233555666666655443210 000 0000 0
Q ss_pred ccHHHHhhc------------------------------C-----------------------------CCCCCCCeEEE
Q 001998 770 INHQAISEA------------------------------L-----------------------------RPPPDLEALEI 790 (984)
Q Consensus 770 ~~~~~~~~~------------------------------l-----------------------------~~~~~L~~L~L 790 (984)
.....+... + ...++|++|++
T Consensus 238 ~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l 317 (549)
T 2z81_A 238 ESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITV 317 (549)
T ss_dssp HHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEE
T ss_pred hHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEe
Confidence 000000000 0 01246777788
Q ss_pred eecCCCCCCCchhh-cCCCCcEEEEeCcCCCCcCC----CCCCCCCcceeeeccccCceEecc---eecCccCCCCCCC-
Q 001998 791 MHYKGQTAFPSWIV-SLNKLKKLKLSSCCKCEIMP----PLGALPSLEILQIQRMESVKRVGV---EFLGIESFNDYAP- 861 (984)
Q Consensus 791 ~~~~~~~~lp~~l~-~l~~L~~L~L~~~~~~~~l~----~l~~Lp~L~~L~L~~~~~l~~~~~---~~~~~~~~~~l~~- 861 (984)
++|.+.. +|.++. .+++|+.|++++|.....+| .++.+++|++|++++|. +..++. .+.....+..+..
T Consensus 318 ~~n~l~~-ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~l~~L~~L~Ls 395 (549)
T 2z81_A 318 ENSKVFL-VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH-LRSMQKTGEILLTLKNLTSLDIS 395 (549)
T ss_dssp ESSCCCC-CCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSC-CCCHHHHHHHGGGCTTCCEEECT
T ss_pred ccCcccc-CCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCc-ccccccchhhhhcCCCCCEEECC
Confidence 8777765 887774 78889999998887665432 26778888888888775 333221 1112222211110
Q ss_pred -----CCCccCcccccccccccccCC----------CCcccccCCC----CcccCCcccEEeeecCcCCCCCCcCCCCCC
Q 001998 862 -----SSSLSLTAFPKLKELTLFHLD----------GCEEWDFGKE----DVIIMPQLCYLDIRFCRKLKSLPDQLLQSS 922 (984)
Q Consensus 862 -----~~~~~~~~f~~L~~L~l~~l~----------~l~~~~~~~~----~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~ 922 (984)
..+.....+++|+.|.+.++. .++.+.+... ....+++|++|++++|. +..+|. ...++
T Consensus 396 ~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~-l~~ip~-~~~l~ 473 (549)
T 2z81_A 396 RNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNK-LKTLPD-ASLFP 473 (549)
T ss_dssp TCCCCCCCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSC-CSSCCC-GGGCT
T ss_pred CCCCccCChhhcccccccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCc-cCcCCC-cccCc
Confidence 112233445556666555431 0111111000 01256777777777774 667776 34577
Q ss_pred CcCeEEeccCcchHHhhccCCCCCccccccccceeecCceee
Q 001998 923 TLEKLRIIRAPILRERFKKDTGEDWSKISHIRDIQIDHEYVQ 964 (984)
Q Consensus 923 ~L~~L~i~~c~~l~~~~~~~~~~~~~~i~~i~~l~~~~~~~~ 964 (984)
+|+.|++++|..- ......+.....+..+++.+|.+.
T Consensus 474 ~L~~L~Ls~N~l~-----~~~~~~~~~l~~L~~L~l~~N~~~ 510 (549)
T 2z81_A 474 VLLVMKISRNQLK-----SVPDGIFDRLTSLQKIWLHTNPWD 510 (549)
T ss_dssp TCCEEECCSSCCC-----CCCTTGGGGCTTCCEEECCSSCBC
T ss_pred cCCEEecCCCccC-----CcCHHHHhcCcccCEEEecCCCcc
Confidence 7777777777531 111122345566667777766654
No 32
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.88 E-value=4.1e-22 Score=236.54 Aligned_cols=126 Identities=17% Similarity=0.164 Sum_probs=107.4
Q ss_pred cccceeEEEEEecCccccc-ccccCCCceeEEeccCCCcchhhhHHhhhccccccee-cCCCCccccCcccccccCccce
Q 001998 541 SQDKLRHSILVLDKVASFP-VSIFNAKKLRSLLIHSPLEVLSPVLKGLFDHLTYGED-DGGENTVHDIPREIEKLIHLRS 618 (984)
Q Consensus 541 ~~~~~r~l~l~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lrv-~l~~~~i~~lp~~i~~L~~Lr~ 618 (984)
.+..++++.+..+.+..++ ..+.++++|++|++.+|. +....+..|.+++.|++ ++++|.+..+|.. .+++|++
T Consensus 50 ~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~ 125 (562)
T 3a79_B 50 LPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNR--IRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRH 125 (562)
T ss_dssp SCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCC--CCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSE
T ss_pred CCCCcCEEECCCCCccccChhhhccCCCccEEECCCCC--CCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCE
Confidence 4478999999999888765 578899999999999997 44545677999999999 9999999999987 8999999
Q ss_pred EEecCCCccccc--hhhccCCcccEEecccccccccccccccCCCCC--CeEEeccCCC
Q 001998 619 LRLAGLKIEELP--ETCCKLFNLQTLDINECYRLKRLPQGVGSLVNL--RHLVVSLNGD 673 (984)
Q Consensus 619 L~L~~~~i~~lp--~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L--~~L~l~~~~~ 673 (984)
|+|++|.++.+| ..++++++|++|++++|. +.. ..+..+++| ++|++++|..
T Consensus 126 L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 126 LDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK-FRQ--LDLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp EECCSSCCSBCCCCGGGGGCTTCCEEEEECSB-CCT--TTTGGGTTSCEEEEEEEESSC
T ss_pred EECCCCCccccCchHhhcccCcccEEecCCCc-ccc--CchhhhhhceeeEEEeecccc
Confidence 999999999765 789999999999999987 554 345666666 9999998854
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.88 E-value=7e-22 Score=228.62 Aligned_cols=320 Identities=20% Similarity=0.226 Sum_probs=183.7
Q ss_pred cccceeEEEEEecCcccccccccCCCceeEEeccCCCcchhhhHHhhhccccccee-cCCCCccccCcccccccCccceE
Q 001998 541 SQDKLRHSILVLDKVASFPVSIFNAKKLRSLLIHSPLEVLSPVLKGLFDHLTYGED-DGGENTVHDIPREIEKLIHLRSL 619 (984)
Q Consensus 541 ~~~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lrv-~l~~~~i~~lp~~i~~L~~Lr~L 619 (984)
....++++.+..+.+..++. +..+++|++|.+.++. +.... . +.+++.|+. ++++|.+..+|. +.++++|++|
T Consensus 66 ~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~--l~~~~-~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L 139 (466)
T 1o6v_A 66 YLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQ--IADIT-P-LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRL 139 (466)
T ss_dssp GCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC--CCCCG-G-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEE
T ss_pred hhcCCCEEECCCCccCCchh-hhccccCCEEECCCCc--cccCh-h-hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEE
Confidence 45678999998888877665 8889999999999886 33322 2 788899999 999999888876 8899999999
Q ss_pred EecCCCccccchhhccCCcccEEecccccccccccccccCCCCCCeEEeccCCCcccCCccCCCCCCCCcCCceEecCCC
Q 001998 620 RLAGLKIEELPETCCKLFNLQTLDINECYRLKRLPQGVGSLVNLRHLVVSLNGDLDYLPKGVERLTSLRTLREFVVSSTG 699 (984)
Q Consensus 620 ~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~ 699 (984)
++++|.+..+|. ++++++|++|++++ . +..++. +.++++|++|++++| .+..++ .+..+++|+.|++..+....
T Consensus 140 ~l~~n~l~~~~~-~~~l~~L~~L~l~~-~-~~~~~~-~~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n~l~~ 213 (466)
T 1o6v_A 140 ELSSNTISDISA-LSGLTSLQQLSFGN-Q-VTDLKP-LANLTTLERLDISSN-KVSDIS-VLAKLTNLESLIATNNQISD 213 (466)
T ss_dssp EEEEEEECCCGG-GTTCTTCSEEEEEE-S-CCCCGG-GTTCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSSCCCC
T ss_pred ECCCCccCCChh-hccCCcccEeecCC-c-ccCchh-hccCCCCCEEECcCC-cCCCCh-hhccCCCCCEEEecCCcccc
Confidence 999999888764 67777777777753 2 444444 667777777777766 344443 35666667666665544332
Q ss_pred CcccccccccccccccccCCCeeEEcCCCCCCChhhhhHhcccCCCCCCeEEEEEcCCcccccCc--------Cchhhcc
Q 001998 700 GKYCTKACKVEGLRQLNHLRGTLRIRGLGNVTDVEEAEKADLEKKKNIVGLELRFDKEEAATEGI--------NEENEIN 771 (984)
Q Consensus 700 ~~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~--------~~~~~~~ 771 (984)
. .. +..+.+|+ .|.+.+.. +... ..+..+++|+.|+++.|......... ......
T Consensus 214 ~------~~---~~~l~~L~-~L~l~~n~-l~~~-----~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~- 276 (466)
T 1o6v_A 214 I------TP---LGILTNLD-ELSLNGNQ-LKDI-----GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQ- 276 (466)
T ss_dssp C------GG---GGGCTTCC-EEECCSSC-CCCC-----GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSC-
T ss_pred c------cc---ccccCCCC-EEECCCCC-cccc-----hhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCc-
Confidence 1 11 22233333 34433321 1111 12344555555555555432210000 000000
Q ss_pred HHHHhhcCCCCCCCCeEEEeecCCCCCCCchhhcCCCCcEEEEeCcCCCCcCCCCCCCCCcceeeeccccCceEecceec
Q 001998 772 HQAISEALRPPPDLEALEIMHYKGQTAFPSWIVSLNKLKKLKLSSCCKCEIMPPLGALPSLEILQIQRMESVKRVGVEFL 851 (984)
Q Consensus 772 ~~~~~~~l~~~~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~l~~l~~Lp~L~~L~L~~~~~l~~~~~~~~ 851 (984)
...++ .+..+++|++|++++|.+.+ +|. +..+++|+.|++++|...... +++.+++|+.|++++|. +..+
T Consensus 277 l~~~~-~~~~l~~L~~L~L~~n~l~~-~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~-l~~~----- 346 (466)
T 1o6v_A 277 ISNIS-PLAGLTALTNLELNENQLED-ISP-ISNLKNLTYLTLYFNNISDIS-PVSSLTKLQRLFFYNNK-VSDV----- 346 (466)
T ss_dssp CCCCG-GGTTCTTCSEEECCSSCCSC-CGG-GGGCTTCSEEECCSSCCSCCG-GGGGCTTCCEEECCSSC-CCCC-----
T ss_pred cCccc-cccCCCccCeEEcCCCcccC-chh-hcCCCCCCEEECcCCcCCCch-hhccCccCCEeECCCCc-cCCc-----
Confidence 00000 13334455555555554444 332 344555555555555333322 24445555555555443 2111
Q ss_pred CccCCCCCCCCCCccCcccccccccccccCCCCcccccCCCCcccCCcccEEeeecCcCCCCCCcCC
Q 001998 852 GIESFNDYAPSSSLSLTAFPKLKELTLFHLDGCEEWDFGKEDVIIMPQLCYLDIRFCRKLKSLPDQL 918 (984)
Q Consensus 852 ~~~~~~~l~~~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~ 918 (984)
..+..+++|+.|.+.++. +..+. + +..+++|+.|++++|+ +..+|...
T Consensus 347 -------------~~l~~l~~L~~L~l~~n~-l~~~~--~--~~~l~~L~~L~l~~n~-~~~~p~~~ 394 (466)
T 1o6v_A 347 -------------SSLANLTNINWLSAGHNQ-ISDLT--P--LANLTRITQLGLNDQA-WTNAPVNY 394 (466)
T ss_dssp -------------GGGTTCTTCCEEECCSSC-CCBCG--G--GTTCTTCCEEECCCEE-EECCCBCC
T ss_pred -------------hhhccCCCCCEEeCCCCc-cCccc--h--hhcCCCCCEEeccCCc-ccCCchhh
Confidence 124567888888887653 22222 2 5679999999999997 55566543
No 34
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.87 E-value=3.1e-21 Score=239.59 Aligned_cols=275 Identities=15% Similarity=0.078 Sum_probs=188.6
Q ss_pred cccceeEEEEEecC-cccc-cccccCCCceeEEeccCCCcchhhhHHhhhccccccee-cCCCCcccc-Cccc--ccccC
Q 001998 541 SQDKLRHSILVLDK-VASF-PVSIFNAKKLRSLLIHSPLEVLSPVLKGLFDHLTYGED-DGGENTVHD-IPRE--IEKLI 614 (984)
Q Consensus 541 ~~~~~r~l~l~~~~-~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lrv-~l~~~~i~~-lp~~--i~~L~ 614 (984)
....++.|.+..+. ...+ |..+.++++|++|++.+|. +....+..|.+++.|+. ++++|.+.. +|.. +++++
T Consensus 46 ~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~--l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~ 123 (844)
T 3j0a_A 46 FLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK--IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK 123 (844)
T ss_dssp SCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC--CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCS
T ss_pred ccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc--CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccC
Confidence 45678999998873 3334 5678999999999999987 44445777999999999 999999876 5554 89999
Q ss_pred ccceEEecCCCccccc--hhhccCCcccEEecccccccccccccccCC--CCCCeEEeccCCCcccCCccCCCCCC----
Q 001998 615 HLRSLRLAGLKIEELP--ETCCKLFNLQTLDINECYRLKRLPQGVGSL--VNLRHLVVSLNGDLDYLPKGVERLTS---- 686 (984)
Q Consensus 615 ~Lr~L~L~~~~i~~lp--~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L--~~L~~L~l~~~~~l~~~p~~i~~l~~---- 686 (984)
+|++|+|++|.+..++ ..++++++|++|++++|......|..+..+ ++|+.|++++|......|..++.+++
T Consensus 124 ~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~ 203 (844)
T 3j0a_A 124 ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRN 203 (844)
T ss_dssp SCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTT
T ss_pred CCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCcccc
Confidence 9999999999998663 579999999999999998445566777777 88999999888655556666665554
Q ss_pred --CCcCCceEecCCCCccccc--------------------------------c-----------------------ccc
Q 001998 687 --LRTLREFVVSSTGGKYCTK--------------------------------A-----------------------CKV 709 (984)
Q Consensus 687 --L~~L~~~~~~~~~~~~~~~--------------------------------~-----------------------~~l 709 (984)
|+.|++..+.......... . ...
T Consensus 204 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~ 283 (844)
T 3j0a_A 204 MVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNS 283 (844)
T ss_dssp CCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECS
T ss_pred CceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccCh
Confidence 7777766553211000000 0 000
Q ss_pred ccccccccCCCeeEEcCCCCCCChhhhhHhcccCCCCCCeEEEEEcCCcccccCcCchhhccHHHHhhcCCCCCCCCeEE
Q 001998 710 EGLRQLNHLRGTLRIRGLGNVTDVEEAEKADLEKKKNIVGLELRFDKEEAATEGINEENEINHQAISEALRPPPDLEALE 789 (984)
Q Consensus 710 ~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~ 789 (984)
..+..+.+|+ .|.+.+.. +.......+..+++|+.|+|+.|..... .+..+..+++|++|+
T Consensus 284 ~~~~~l~~L~-~L~L~~n~----i~~~~~~~~~~l~~L~~L~Ls~N~l~~~--------------~~~~~~~l~~L~~L~ 344 (844)
T 3j0a_A 284 RVFETLKDLK-VLNLAYNK----INKIADEAFYGLDNLQVLNLSYNLLGEL--------------YSSNFYGLPKVAYID 344 (844)
T ss_dssp CCSSSCCCCC-EEEEESCC----CCEECTTTTTTCSSCCEEEEESCCCSCC--------------CSCSCSSCTTCCEEE
T ss_pred hhhhcCCCCC-EEECCCCc----CCCCChHHhcCCCCCCEEECCCCCCCcc--------------CHHHhcCCCCCCEEE
Confidence 1112222233 33333211 1112223467789999999999876432 245677889999999
Q ss_pred EeecCCCCCCCchhhcCCCCcEEEEeCcCCCCcCCCCCCCCCcceeeeccc
Q 001998 790 IMHYKGQTAFPSWIVSLNKLKKLKLSSCCKCEIMPPLGALPSLEILQIQRM 840 (984)
Q Consensus 790 L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~l~~l~~Lp~L~~L~L~~~ 840 (984)
+++|.+....|..+..+++|+.|+|++|.... + ..+|+|+.|.+++|
T Consensus 345 L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-i---~~~~~L~~L~l~~N 391 (844)
T 3j0a_A 345 LQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-I---HFIPSIPDIFLSGN 391 (844)
T ss_dssp CCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-C---SSCCSCSEEEEESC
T ss_pred CCCCCCCccChhhhcCCCCCCEEECCCCCCCc-c---cCCCCcchhccCCC
Confidence 99999887344567789999999999986442 1 12444444444443
No 35
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.87 E-value=2e-21 Score=236.57 Aligned_cols=263 Identities=17% Similarity=0.128 Sum_probs=172.3
Q ss_pred EEEecCcccccccccCCCceeEEeccCCCcchhhhHHhhhccccccee-cCCCCccccC-cccccccCccceEEecCCCc
Q 001998 549 ILVLDKVASFPVSIFNAKKLRSLLIHSPLEVLSPVLKGLFDHLTYGED-DGGENTVHDI-PREIEKLIHLRSLRLAGLKI 626 (984)
Q Consensus 549 ~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lrv-~l~~~~i~~l-p~~i~~L~~Lr~L~L~~~~i 626 (984)
......+..+|..+. +++++|++.++. +....+..|.+++.|++ ++++|.+..+ |..++++++|++|+|++|.+
T Consensus 10 ~cs~~~L~~ip~~~~--~~l~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 85 (680)
T 1ziw_A 10 DCSHLKLTQVPDDLP--TNITVLNLTHNQ--LRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 85 (680)
T ss_dssp ECCSSCCSSCCSCSC--TTCSEEECCSSC--CCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCC
T ss_pred ECCCCCccccccccC--CCCcEEECCCCC--CCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCcc
Confidence 333445556666554 789999999987 44445666899999999 9999998876 67789999999999999999
Q ss_pred cccch-hhccCCcccEEeccccccccccc-ccccCCCCCCeEEeccCCCcccCCccCCCCCCCCcCCceEecCCCCcccc
Q 001998 627 EELPE-TCCKLFNLQTLDINECYRLKRLP-QGVGSLVNLRHLVVSLNGDLDYLPKGVERLTSLRTLREFVVSSTGGKYCT 704 (984)
Q Consensus 627 ~~lp~-~i~~L~~L~~L~L~~~~~l~~lP-~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~ 704 (984)
+.+|. .++++++|++|++++|. +..+| ..++++++|++|++++|......|..++++++|+.|++..+.......
T Consensus 86 ~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-- 162 (680)
T 1ziw_A 86 SQLSDKTFAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKS-- 162 (680)
T ss_dssp CCCCTTTTTTCTTCSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCH--
T ss_pred CccChhhhccCCCCCEEECCCCc-cCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCH--
Confidence 99997 69999999999999998 66766 679999999999999995544556678999999999887665443110
Q ss_pred cccccccccccccCCCeeEEcCCCCCCChhhhhHhccc---------------------------CCCCCCeEEEEEcCC
Q 001998 705 KACKVEGLRQLNHLRGTLRIRGLGNVTDVEEAEKADLE---------------------------KKKNIVGLELRFDKE 757 (984)
Q Consensus 705 ~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~---------------------------~~~~L~~L~L~~~~~ 757 (984)
..+. ...+.+|+ .|.+.+. .+.... ...+. ...+|+.|++++|..
T Consensus 163 --~~~~-~~~~~~L~-~L~L~~n-~l~~~~---~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l 234 (680)
T 1ziw_A 163 --EELD-IFANSSLK-KLELSSN-QIKEFS---PGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQL 234 (680)
T ss_dssp --HHHG-GGTTCEES-EEECTTC-CCCCBC---TTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCC
T ss_pred --HHhh-cccccccc-EEECCCC-cccccC---hhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcc
Confidence 0000 00112222 3333322 111110 01111 224566666655544
Q ss_pred cccccCcCchhhccHHHHhhcCCCC--CCCCeEEEeecCCCCCCCchhhcCCCCcEEEEeCcCCCCcCCC-CCCCCCcce
Q 001998 758 EAATEGINEENEINHQAISEALRPP--PDLEALEIMHYKGQTAFPSWIVSLNKLKKLKLSSCCKCEIMPP-LGALPSLEI 834 (984)
Q Consensus 758 ~~~~~~~~~~~~~~~~~~~~~l~~~--~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~l~~-l~~Lp~L~~ 834 (984)
... .+..+..+ ++|++|++++|.+.+..|.++..+++|++|++++|......|. ++.+++|++
T Consensus 235 ~~~--------------~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 300 (680)
T 1ziw_A 235 STT--------------SNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRY 300 (680)
T ss_dssp CEE--------------CTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCE
T ss_pred ccc--------------ChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccE
Confidence 322 11122222 3477777777766654455666677777777776655554443 666667777
Q ss_pred eeeccc
Q 001998 835 LQIQRM 840 (984)
Q Consensus 835 L~L~~~ 840 (984)
|++++|
T Consensus 301 L~L~~~ 306 (680)
T 1ziw_A 301 LNLKRS 306 (680)
T ss_dssp EECTTC
T ss_pred Eeccch
Confidence 766654
No 36
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.87 E-value=7.1e-22 Score=216.58 Aligned_cols=230 Identities=22% Similarity=0.301 Sum_probs=156.8
Q ss_pred ccccee-cCCCCccccCcccccccCccceEEecCCCccccchhhccCCcccEEecccccccccccccccCCCCCCeEEec
Q 001998 591 LTYGED-DGGENTVHDIPREIEKLIHLRSLRLAGLKIEELPETCCKLFNLQTLDINECYRLKRLPQGVGSLVNLRHLVVS 669 (984)
Q Consensus 591 l~~Lrv-~l~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~ 669 (984)
...++. ++++|.+..+|..++++++|++|+|++|.++.+|..++++++|++|+|++|. +..+|..+.++++|++|+++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNP-LRALPASIASLNRLRELSIR 158 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGCTTCCEEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCc-cccCcHHHhcCcCCCEEECC
Confidence 355666 7778888888888889999999999999988999889999999999999987 77889889999999999998
Q ss_pred cCCCcccCCccCCCCCCCCcCCceEecCCCCcccccccccccccccccCCCeeEEcCCCCCCChhhhhHhcccCCCCCCe
Q 001998 670 LNGDLDYLPKGVERLTSLRTLREFVVSSTGGKYCTKACKVEGLRQLNHLRGTLRIRGLGNVTDVEEAEKADLEKKKNIVG 749 (984)
Q Consensus 670 ~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~ 749 (984)
+|.....+|..++... +. ..+..+++|+.
T Consensus 159 ~n~~~~~~p~~~~~~~--------------------------------~~-------------------~~~~~l~~L~~ 187 (328)
T 4fcg_A 159 ACPELTELPEPLASTD--------------------------------AS-------------------GEHQGLVNLQS 187 (328)
T ss_dssp EETTCCCCCSCSEEEC---------------------------------C-------------------CCEEESTTCCE
T ss_pred CCCCccccChhHhhcc--------------------------------ch-------------------hhhccCCCCCE
Confidence 8866666665432200 00 01223445555
Q ss_pred EEEEEcCCcccccCcCchhhccHHHHhhcCCCCCCCCeEEEeecCCCCCCCchhhcCCCCcEEEEeCcCCCCcCCC-CCC
Q 001998 750 LELRFDKEEAATEGINEENEINHQAISEALRPPPDLEALEIMHYKGQTAFPSWIVSLNKLKKLKLSSCCKCEIMPP-LGA 828 (984)
Q Consensus 750 L~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~l~~-l~~ 828 (984)
|++++|.... ++..+..+++|++|++++|.+.+ +|..+..+++|+.|+|++|.....+|. ++.
T Consensus 188 L~L~~n~l~~---------------lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~ 251 (328)
T 4fcg_A 188 LRLEWTGIRS---------------LPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGG 251 (328)
T ss_dssp EEEEEECCCC---------------CCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTC
T ss_pred EECcCCCcCc---------------chHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcC
Confidence 5555554321 22334445556666666665554 555555566666666666555554444 555
Q ss_pred CCCcceeeeccccCceEecceecCccCCCCCCCCCCccCcccccccccccccCCCCcccccCCCCcccCCcccEEeeecC
Q 001998 829 LPSLEILQIQRMESVKRVGVEFLGIESFNDYAPSSSLSLTAFPKLKELTLFHLDGCEEWDFGKEDVIIMPQLCYLDIRFC 908 (984)
Q Consensus 829 Lp~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c 908 (984)
+++|++|++++|... . ..+..+..+++|++|+|++|
T Consensus 252 l~~L~~L~L~~n~~~-----------------------------------------~---~~p~~~~~l~~L~~L~L~~n 287 (328)
T 4fcg_A 252 RAPLKRLILKDCSNL-----------------------------------------L---TLPLDIHRLTQLEKLDLRGC 287 (328)
T ss_dssp CCCCCEEECTTCTTC-----------------------------------------C---BCCTTGGGCTTCCEEECTTC
T ss_pred CCCCCEEECCCCCch-----------------------------------------h---hcchhhhcCCCCCEEeCCCC
Confidence 555555555554422 1 11223456899999999999
Q ss_pred cCCCCCCcCCCCCCCcCeEEeccC
Q 001998 909 RKLKSLPDQLLQSSTLEKLRIIRA 932 (984)
Q Consensus 909 ~~l~~lp~~~~~l~~L~~L~i~~c 932 (984)
+.+..+|..+..+++|+.+++..+
T Consensus 288 ~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 288 VNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp TTCCCCCGGGGGSCTTCEEECCGG
T ss_pred CchhhccHHHhhccCceEEeCCHH
Confidence 999999999999999999988754
No 37
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.87 E-value=9.3e-22 Score=227.39 Aligned_cols=332 Identities=17% Similarity=0.087 Sum_probs=234.1
Q ss_pred cccceeEEEEEecCcc-cc-cccccCCCceeEEeccCCCcchhhhHHhhhccccccee-cCCCCcccc-Cccc--ccccC
Q 001998 541 SQDKLRHSILVLDKVA-SF-PVSIFNAKKLRSLLIHSPLEVLSPVLKGLFDHLTYGED-DGGENTVHD-IPRE--IEKLI 614 (984)
Q Consensus 541 ~~~~~r~l~l~~~~~~-~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lrv-~l~~~~i~~-lp~~--i~~L~ 614 (984)
...+++.+.+..+.+. .+ +..+..+++|++|++.+|. +....+..|.+++.|+. ++++|.+.. +|.. +++++
T Consensus 52 ~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~ 129 (455)
T 3v47_A 52 RLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ--FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLT 129 (455)
T ss_dssp SCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT--TCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCT
T ss_pred cCccccEEECcCCcccceECcccccccccCCEEeCCCCc--cCccChhhccCcccCCEEeCCCCCCCccccCcccccCcc
Confidence 4567999999888764 33 4568899999999999987 44445667899999999 999999875 4544 89999
Q ss_pred ccceEEecCCCcccc-chh-hccCCcccEEecccccccccccccccCC--CCCCeEEeccCCCcccCCcc---------C
Q 001998 615 HLRSLRLAGLKIEEL-PET-CCKLFNLQTLDINECYRLKRLPQGVGSL--VNLRHLVVSLNGDLDYLPKG---------V 681 (984)
Q Consensus 615 ~Lr~L~L~~~~i~~l-p~~-i~~L~~L~~L~L~~~~~l~~lP~~i~~L--~~L~~L~l~~~~~l~~~p~~---------i 681 (984)
+|++|+|++|.+..+ |.. +.++++|++|++++|......|..+..+ .+|++|++++| .+..++.. +
T Consensus 130 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~~ 208 (455)
T 3v47_A 130 SLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSI-TLQDMNEYWLGWEKCGNP 208 (455)
T ss_dssp TCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTC-BCTTCSTTCTTHHHHCCT
T ss_pred cCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccC-cccccchhhccccccccc
Confidence 999999999999977 555 8999999999999998444456667766 78999999988 44444422 3
Q ss_pred CCCCCCCcCCceEecCCCCcccccccccccccccccCCCeeEEcCCCCC---------CChhhhhHhcccCCCCCCeEEE
Q 001998 682 ERLTSLRTLREFVVSSTGGKYCTKACKVEGLRQLNHLRGTLRIRGLGNV---------TDVEEAEKADLEKKKNIVGLEL 752 (984)
Q Consensus 682 ~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~---------~~~~~~~~~~l~~~~~L~~L~L 752 (984)
..+++|+.|++..+...... ...+..+....+++ .+.+.+.... ......... -....+|+.|++
T Consensus 209 ~~~~~L~~L~Ls~n~l~~~~----~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~~L~l 282 (455)
T 3v47_A 209 FKNTSITTLDLSGNGFKESM----AKRFFDAIAGTKIQ-SLILSNSYNMGSSFGHTNFKDPDNFTFK-GLEASGVKTCDL 282 (455)
T ss_dssp TTTCEEEEEECTTSCCCHHH----HHHHHHHTTTCCEE-EEECTTCTTTSCCTTCCSSCCCCTTTTG-GGTTSCCCEEEC
T ss_pred cccceeeeEecCCCcccccc----hhhhhcccccccee-eEeeccccccccccchhhhccCcccccc-cccccCceEEEe
Confidence 46678888887665433210 11111111112222 3333322111 111100001 113468999999
Q ss_pred EEcCCcccccCcCchhhccHHHHhhcCCCCCCCCeEEEeecCCCCCCCchhhcCCCCcEEEEeCcCCCCcCCC-CCCCCC
Q 001998 753 RFDKEEAATEGINEENEINHQAISEALRPPPDLEALEIMHYKGQTAFPSWIVSLNKLKKLKLSSCCKCEIMPP-LGALPS 831 (984)
Q Consensus 753 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~l~~-l~~Lp~ 831 (984)
+.|..... .+..+..+++|++|++++|.+.+..|..+..+++|++|+|++|......|. ++.+++
T Consensus 283 ~~n~l~~~--------------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 348 (455)
T 3v47_A 283 SKSKIFAL--------------LKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDK 348 (455)
T ss_dssp CSSCCCEE--------------CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTT
T ss_pred cCcccccc--------------chhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCccc
Confidence 98876533 355678889999999999999885677899999999999999977665554 889999
Q ss_pred cceeeeccccCceEecceecCccCCCCCCCCCCccCcccccccccccccCCCCcccccCCCCcccCCcccEEeeecCcCC
Q 001998 832 LEILQIQRMESVKRVGVEFLGIESFNDYAPSSSLSLTAFPKLKELTLFHLDGCEEWDFGKEDVIIMPQLCYLDIRFCRKL 911 (984)
Q Consensus 832 L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l 911 (984)
|++|++++|. +..+... .+..+++|+.|.+.++ .+. .+.+..+..+++|++|+|++|+..
T Consensus 349 L~~L~Ls~N~-l~~~~~~----------------~~~~l~~L~~L~L~~N-~l~--~~~~~~~~~l~~L~~L~l~~N~l~ 408 (455)
T 3v47_A 349 LEVLDLSYNH-IRALGDQ----------------SFLGLPNLKELALDTN-QLK--SVPDGIFDRLTSLQKIWLHTNPWD 408 (455)
T ss_dssp CCEEECCSSC-CCEECTT----------------TTTTCTTCCEEECCSS-CCS--CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCEEECCCCc-ccccChh----------------hccccccccEEECCCC-ccc--cCCHhHhccCCcccEEEccCCCcc
Confidence 9999999986 4444211 1456788888888764 232 344444678999999999999855
Q ss_pred CCCC
Q 001998 912 KSLP 915 (984)
Q Consensus 912 ~~lp 915 (984)
...|
T Consensus 409 ~~~~ 412 (455)
T 3v47_A 409 CSCP 412 (455)
T ss_dssp CCTT
T ss_pred cCCC
Confidence 4444
No 38
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.86 E-value=6.6e-21 Score=218.46 Aligned_cols=298 Identities=21% Similarity=0.181 Sum_probs=219.7
Q ss_pred hccccccee-cCCCCccccCcccccccCccceEEecCCCccccchhhccCCcccEEecccccccccccccccCCCCCCeE
Q 001998 588 FDHLTYGED-DGGENTVHDIPREIEKLIHLRSLRLAGLKIEELPETCCKLFNLQTLDINECYRLKRLPQGVGSLVNLRHL 666 (984)
Q Consensus 588 ~~~l~~Lrv-~l~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L 666 (984)
+.+++.|+. ++++|.+..+| .++.+++|++|+|++|.++.+| ++++++|++|++++|. ++.+| ++++++|++|
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~-l~~~~--~~~l~~L~~L 111 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNK-LTNLD--VTPLTKLTYL 111 (457)
T ss_dssp HHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSC-CSCCC--CTTCTTCCEE
T ss_pred hhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCC-Cceee--cCCCCcCCEE
Confidence 677899999 99999999998 6999999999999999999987 8999999999999998 87776 8999999999
Q ss_pred EeccCCCcccCCccCCCCCCCCcCCceEecCCCCcccccccccccccccccCCCeeEEcCCCCCCChhhhhHhcccCCCC
Q 001998 667 VVSLNGDLDYLPKGVERLTSLRTLREFVVSSTGGKYCTKACKVEGLRQLNHLRGTLRIRGLGNVTDVEEAEKADLEKKKN 746 (984)
Q Consensus 667 ~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~~~~ 746 (984)
++++| .+..+| ++.+++|+.|++..+.... . .+..+.+|+ .|.+.....+... .+..+++
T Consensus 112 ~L~~N-~l~~l~--~~~l~~L~~L~l~~N~l~~-------l---~l~~l~~L~-~L~l~~n~~~~~~------~~~~l~~ 171 (457)
T 3bz5_A 112 NCDTN-KLTKLD--VSQNPLLTYLNCARNTLTE-------I---DVSHNTQLT-ELDCHLNKKITKL------DVTPQTQ 171 (457)
T ss_dssp ECCSS-CCSCCC--CTTCTTCCEEECTTSCCSC-------C---CCTTCTTCC-EEECTTCSCCCCC------CCTTCTT
T ss_pred ECCCC-cCCeec--CCCCCcCCEEECCCCccce-------e---ccccCCcCC-EEECCCCCccccc------ccccCCc
Confidence 99999 566665 8899999999887665443 1 244455555 6666655443332 3667899
Q ss_pred CCeEEEEEcCCcccccCcCchhhccHHHHhhcCCCCCCCCeEEEeecCCCCCCCchhhcCCCCcEEEEeCcCCCCcCCCC
Q 001998 747 IVGLELRFDKEEAATEGINEENEINHQAISEALRPPPDLEALEIMHYKGQTAFPSWIVSLNKLKKLKLSSCCKCEIMPPL 826 (984)
Q Consensus 747 L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~l~~l 826 (984)
|+.|++++|..... + +..+++|++|++++|.+.+ ++ +..+++|+.|++++|.... +| +
T Consensus 172 L~~L~ls~n~l~~l---------------~--l~~l~~L~~L~l~~N~l~~-~~--l~~l~~L~~L~Ls~N~l~~-ip-~ 229 (457)
T 3bz5_A 172 LTTLDCSFNKITEL---------------D--VSQNKLLNRLNCDTNNITK-LD--LNQNIQLTFLDCSSNKLTE-ID-V 229 (457)
T ss_dssp CCEEECCSSCCCCC---------------C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC-CC-C
T ss_pred CCEEECCCCcccee---------------c--cccCCCCCEEECcCCcCCe-ec--cccCCCCCEEECcCCcccc-cC-c
Confidence 99999998876432 1 6678899999999999887 64 7789999999999997766 56 8
Q ss_pred CCCCCcceeeeccccCceEecceecCccCCCCCCCCCCccCccccccc----------ccccccCCCCcccccCCCCccc
Q 001998 827 GALPSLEILQIQRMESVKRVGVEFLGIESFNDYAPSSSLSLTAFPKLK----------ELTLFHLDGCEEWDFGKEDVII 896 (984)
Q Consensus 827 ~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~f~~L~----------~L~l~~l~~l~~~~~~~~~~~~ 896 (984)
+.+++|++|++++|. +..++ .+.|++|+ .|.+.++.....+. ...
T Consensus 230 ~~l~~L~~L~l~~N~-l~~~~-------------------~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~-----~~~ 284 (457)
T 3bz5_A 230 TPLTQLTYFDCSVNP-LTELD-------------------VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ-----AEG 284 (457)
T ss_dssp TTCTTCSEEECCSSC-CSCCC-------------------CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE-----CTT
T ss_pred cccCCCCEEEeeCCc-CCCcC-------------------HHHCCCCCEEeccCCCCCEEECCCCccCCccc-----ccc
Confidence 899999999999886 43332 23445444 44444443333322 346
Q ss_pred CCcccEEeeecCcCCCCCCcC--------CCCCCCcCeEEeccCcchHHhhccCCCCCccccccccceeecCceeeee
Q 001998 897 MPQLCYLDIRFCRKLKSLPDQ--------LLQSSTLEKLRIIRAPILRERFKKDTGEDWSKISHIRDIQIDHEYVQGF 966 (984)
Q Consensus 897 l~~L~~L~l~~c~~l~~lp~~--------~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~i~~i~~l~~~~~~~~~~ 966 (984)
+++|+.|++++|+.++.+|.. +..+++|++|++++|.. .+-+......+..+.+.+|.++++
T Consensus 285 l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l--------~~l~l~~l~~L~~L~l~~N~l~~l 354 (457)
T 3bz5_A 285 CRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTEL--------TELDVSHNTKLKSLSCVNAHIQDF 354 (457)
T ss_dssp CTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCC--------SCCCCTTCTTCSEEECCSSCCCBC
T ss_pred cccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcc--------cccccccCCcCcEEECCCCCCCCc
Confidence 899999999999887777642 23345555555555542 112244445566666777766653
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.86 E-value=2.1e-21 Score=219.32 Aligned_cols=304 Identities=15% Similarity=0.133 Sum_probs=230.7
Q ss_pred cccceeEEEEEecCccccccc-ccCCCceeEEeccCCCcchhhhHHhhhccccccee-cCCCCccccCc-ccccccCccc
Q 001998 541 SQDKLRHSILVLDKVASFPVS-IFNAKKLRSLLIHSPLEVLSPVLKGLFDHLTYGED-DGGENTVHDIP-REIEKLIHLR 617 (984)
Q Consensus 541 ~~~~~r~l~l~~~~~~~~~~~-~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lrv-~l~~~~i~~lp-~~i~~L~~Lr 617 (984)
...+++.+.+..+.+..+|.. +..+++|++|++.++. +....+..|..++.|+. ++++|.+..+| ..++++++|+
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~--i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ--IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 120 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSC--CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCc--ccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCC
Confidence 346789999999988887765 5789999999999987 44445556899999999 99999998875 5589999999
Q ss_pred eEEecCCCccccchh-hccCCcccEEecccccccccc-cccccCCCCCCeEEeccCCCcccCCccCCCCCCCCcCCceEe
Q 001998 618 SLRLAGLKIEELPET-CCKLFNLQTLDINECYRLKRL-PQGVGSLVNLRHLVVSLNGDLDYLPKGVERLTSLRTLREFVV 695 (984)
Q Consensus 618 ~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~l-P~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~ 695 (984)
+|+|++|.++.+|.. ++++++|++|++++|. +..+ |..+.++++|++|++++| .+..++ ++.+++|+.|++..+
T Consensus 121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~--~~~l~~L~~L~l~~n 196 (390)
T 3o6n_A 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSN-RLTHVD--LSLIPSLFHANVSYN 196 (390)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSS-CCSBCC--GGGCTTCSEEECCSS
T ss_pred EEECCCCccCcCCHHHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCC-cCCccc--cccccccceeecccc
Confidence 999999999999987 4899999999999998 6665 456899999999999998 455553 667888888877544
Q ss_pred cCCCCcccccccccccccccccCCCeeEEcCCCCCCChhhhhHhcccCCCCCCeEEEEEcCCcccccCcCchhhccHHHH
Q 001998 696 SSTGGKYCTKACKVEGLRQLNHLRGTLRIRGLGNVTDVEEAEKADLEKKKNIVGLELRFDKEEAATEGINEENEINHQAI 775 (984)
Q Consensus 696 ~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~ 775 (984)
... .+.....++ .|.+.+.. +... ......+|+.|+++.|.....
T Consensus 197 ~l~------------~~~~~~~L~-~L~l~~n~-l~~~------~~~~~~~L~~L~l~~n~l~~~--------------- 241 (390)
T 3o6n_A 197 LLS------------TLAIPIAVE-ELDASHNS-INVV------RGPVNVELTILKLQHNNLTDT--------------- 241 (390)
T ss_dssp CCS------------EEECCSSCS-EEECCSSC-CCEE------ECCCCSSCCEEECCSSCCCCC---------------
T ss_pred ccc------------ccCCCCcce-EEECCCCe-eeec------cccccccccEEECCCCCCccc---------------
Confidence 322 222223333 44443321 1111 112346899999998876432
Q ss_pred hhcCCCCCCCCeEEEeecCCCCCCCchhhcCCCCcEEEEeCcCCCCcCCCCCCCCCcceeeeccccCceEecceecCccC
Q 001998 776 SEALRPPPDLEALEIMHYKGQTAFPSWIVSLNKLKKLKLSSCCKCEIMPPLGALPSLEILQIQRMESVKRVGVEFLGIES 855 (984)
Q Consensus 776 ~~~l~~~~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~l~~l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~ 855 (984)
..+..+++|++|++++|.+.+..|..+..+++|++|+|++|......+.++.+|+|++|++++|. +..++..
T Consensus 242 -~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~------ 313 (390)
T 3o6n_A 242 -AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH-LLHVERN------ 313 (390)
T ss_dssp -GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSC-CCCCGGG------
T ss_pred -HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCc-ceecCcc------
Confidence 34567889999999999998856888999999999999999766544447789999999999986 4444322
Q ss_pred CCCCCCCCCccCcccccccccccccCCCCcccccCCCCcccCCcccEEeeecCcC
Q 001998 856 FNDYAPSSSLSLTAFPKLKELTLFHLDGCEEWDFGKEDVIIMPQLCYLDIRFCRK 910 (984)
Q Consensus 856 ~~~l~~~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~ 910 (984)
+..+++|+.|.+.++. +... .+..+++|+.|++++|+.
T Consensus 314 -----------~~~l~~L~~L~L~~N~-i~~~-----~~~~~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 314 -----------QPQFDRLENLYLDHNS-IVTL-----KLSTHHTLKNLTLSHNDW 351 (390)
T ss_dssp -----------HHHHTTCSEEECCSSC-CCCC-----CCCTTCCCSEEECCSSCE
T ss_pred -----------ccccCcCCEEECCCCc-ccee-----CchhhccCCEEEcCCCCc
Confidence 3467889998887753 3322 245789999999999974
No 40
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.85 E-value=7.2e-21 Score=221.17 Aligned_cols=297 Identities=19% Similarity=0.140 Sum_probs=213.7
Q ss_pred cccee-cCCCCccccC-cccccccCccceEEecCCCcccc-chhhccCCcccEEeccccccccccccc-ccCCCCCCeEE
Q 001998 592 TYGED-DGGENTVHDI-PREIEKLIHLRSLRLAGLKIEEL-PETCCKLFNLQTLDINECYRLKRLPQG-VGSLVNLRHLV 667 (984)
Q Consensus 592 ~~Lrv-~l~~~~i~~l-p~~i~~L~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lP~~-i~~L~~L~~L~ 667 (984)
..+++ ++++|.+..+ |..+.++++|++|+|++|.++.+ |..+.++++|++|+|++|. +..+|.. +.++++|++|+
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSSTTCTTCCEEE
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc-CCccCcccccCCCCCCEEE
Confidence 46677 8888888776 46788888888888888888866 6678888888888888887 7777754 67888888888
Q ss_pred eccCCCcccCCccCCCCCCCCcCCceEecCCCCcccccccccccccccccCCCeeEEcCCCCCCChhhhhHhcccCCCCC
Q 001998 668 VSLNGDLDYLPKGVERLTSLRTLREFVVSSTGGKYCTKACKVEGLRQLNHLRGTLRIRGLGNVTDVEEAEKADLEKKKNI 747 (984)
Q Consensus 668 l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~~~~L 747 (984)
+++|......|..+..+++|+.|++..+.... + ....+..+++|
T Consensus 111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~----------------------~--------------~~~~~~~l~~L 154 (477)
T 2id5_A 111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVY----------------------I--------------SHRAFSGLNSL 154 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEEECCTTCCE----------------------E--------------CTTSSTTCTTC
T ss_pred CCCCccccCChhHccccccCCEEECCCCccce----------------------e--------------ChhhccCCCCC
Confidence 88885444445567778888877664322110 0 01234567789
Q ss_pred CeEEEEEcCCcccccCcCchhhccHHHHhhcCCCCCCCCeEEEeecCCCCCCCchhhcCCCCcEEEEeCcCCCCcCCC-C
Q 001998 748 VGLELRFDKEEAATEGINEENEINHQAISEALRPPPDLEALEIMHYKGQTAFPSWIVSLNKLKKLKLSSCCKCEIMPP-L 826 (984)
Q Consensus 748 ~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~l~~-l 826 (984)
+.|+++.|..... ....+..+++|+.|++++|.+....+..+..+++|+.|++++|.....+|. .
T Consensus 155 ~~L~l~~n~l~~~--------------~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 220 (477)
T 2id5_A 155 EQLTLEKCNLTSI--------------PTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNC 220 (477)
T ss_dssp CEEEEESCCCSSC--------------CHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTT
T ss_pred CEEECCCCcCccc--------------ChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCccc
Confidence 9999998876432 123456778999999999998874455677899999999999988776655 5
Q ss_pred CCCCCcceeeeccccCceEecceecCccCCCCCCCCCCccCcccccccccccccCCCCcccccCCCCcccCCcccEEeee
Q 001998 827 GALPSLEILQIQRMESVKRVGVEFLGIESFNDYAPSSSLSLTAFPKLKELTLFHLDGCEEWDFGKEDVIIMPQLCYLDIR 906 (984)
Q Consensus 827 ~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~ 906 (984)
...++|+.|++++|. +..++... +..+++|+.|.+.+.. ...+.+..+..+++|++|+|+
T Consensus 221 ~~~~~L~~L~l~~n~-l~~~~~~~----------------~~~l~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~L~ 280 (477)
T 2id5_A 221 LYGLNLTSLSITHCN-LTAVPYLA----------------VRHLVYLRFLNLSYNP---ISTIEGSMLHELLRLQEIQLV 280 (477)
T ss_dssp TTTCCCSEEEEESSC-CCSCCHHH----------------HTTCTTCCEEECCSSC---CCEECTTSCTTCTTCCEEECC
T ss_pred ccCccccEEECcCCc-ccccCHHH----------------hcCccccCeeECCCCc---CCccChhhccccccCCEEECC
Confidence 566799999999885 44333211 2457788888877642 223444557789999999999
Q ss_pred cCcCCCCCCcCCCCCCCcCeEEeccCcchHHhhccCCCCCccccccccceeecCceee
Q 001998 907 FCRKLKSLPDQLLQSSTLEKLRIIRAPILRERFKKDTGEDWSKISHIRDIQIDHEYVQ 964 (984)
Q Consensus 907 ~c~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~i~~i~~l~~~~~~~~ 964 (984)
+|......|..+..+++|+.|++++|..-. .....+.....+..+.+.+|.|.
T Consensus 281 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-----~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 281 GGQLAVVEPYAFRGLNYLRVLNVSGNQLTT-----LEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp SSCCSEECTTTBTTCTTCCEEECCSSCCSC-----CCGGGBSCGGGCCEEECCSSCEE
T ss_pred CCccceECHHHhcCcccCCEEECCCCcCce-----eCHhHcCCCcccCEEEccCCCcc
Confidence 997544457788899999999999996411 11122345667778888887766
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.85 E-value=2.9e-21 Score=230.40 Aligned_cols=303 Identities=15% Similarity=0.132 Sum_probs=229.6
Q ss_pred ccceeEEEEEecCccccccc-ccCCCceeEEeccCCCcchhhhHHhhhccccccee-cCCCCccccCcc-cccccCccce
Q 001998 542 QDKLRHSILVLDKVASFPVS-IFNAKKLRSLLIHSPLEVLSPVLKGLFDHLTYGED-DGGENTVHDIPR-EIEKLIHLRS 618 (984)
Q Consensus 542 ~~~~r~l~l~~~~~~~~~~~-~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lrv-~l~~~~i~~lp~-~i~~L~~Lr~ 618 (984)
...++.+.+..+.+..+|.. +..+++|++|++.++. +....+..|..++.|+. ++++|.+..+|. .++++++|++
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ--IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSC--CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCC--CCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence 35678888888888777765 5679999999999987 44445557899999999 999999988865 5699999999
Q ss_pred EEecCCCccccchh-hccCCcccEEecccccccccc-cccccCCCCCCeEEeccCCCcccCCccCCCCCCCCcCCceEec
Q 001998 619 LRLAGLKIEELPET-CCKLFNLQTLDINECYRLKRL-PQGVGSLVNLRHLVVSLNGDLDYLPKGVERLTSLRTLREFVVS 696 (984)
Q Consensus 619 L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~l-P~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~ 696 (984)
|+|++|.++.+|.. ++++++|++|+|++|. +..+ |..+.++++|++|++++| .+..++ ++.+++|+.|++..+.
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~--~~~l~~L~~L~l~~n~ 203 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSN-RLTHVD--LSLIPSLFHANVSYNL 203 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECTTS-CCSBCC--GGGCTTCSEEECCSSC
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCCc-CCCCChhhhhcCCcCcEEECcCC-CCCCcC--hhhhhhhhhhhcccCc
Confidence 99999999999987 4899999999999998 5555 457999999999999998 555554 5678888888776443
Q ss_pred CCCCcccccccccccccccccCCCeeEEcCCCCCCChhhhhHhcccCCCCCCeEEEEEcCCcccccCcCchhhccHHHHh
Q 001998 697 STGGKYCTKACKVEGLRQLNHLRGTLRIRGLGNVTDVEEAEKADLEKKKNIVGLELRFDKEEAATEGINEENEINHQAIS 776 (984)
Q Consensus 697 ~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~ 776 (984)
.. .+.....|. .|.+.+.. +.... .....+|+.|+|++|.... +
T Consensus 204 l~------------~l~~~~~L~-~L~ls~n~-l~~~~------~~~~~~L~~L~L~~n~l~~----------------~ 247 (597)
T 3oja_B 204 LS------------TLAIPIAVE-ELDASHNS-INVVR------GPVNVELTILKLQHNNLTD----------------T 247 (597)
T ss_dssp CS------------EEECCTTCS-EEECCSSC-CCEEE------CSCCSCCCEEECCSSCCCC----------------C
T ss_pred cc------------cccCCchhh-eeeccCCc-ccccc------cccCCCCCEEECCCCCCCC----------------C
Confidence 22 222223333 44443321 11111 1123689999999887642 1
Q ss_pred hcCCCCCCCCeEEEeecCCCCCCCchhhcCCCCcEEEEeCcCCCCcCCCCCCCCCcceeeeccccCceEecceecCccCC
Q 001998 777 EALRPPPDLEALEIMHYKGQTAFPSWIVSLNKLKKLKLSSCCKCEIMPPLGALPSLEILQIQRMESVKRVGVEFLGIESF 856 (984)
Q Consensus 777 ~~l~~~~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~l~~l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~~ 856 (984)
..+..+++|++|+|++|.+.+..|..+..+++|+.|+|++|......+.++.+|+|+.|+|++|. +..++..
T Consensus 248 ~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~-l~~i~~~------- 319 (597)
T 3oja_B 248 AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH-LLHVERN------- 319 (597)
T ss_dssp GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSC-CCCCGGG-------
T ss_pred hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCC-CCccCcc-------
Confidence 44667899999999999998866889999999999999999766644447789999999999986 4443322
Q ss_pred CCCCCCCCccCcccccccccccccCCCCcccccCCCCcccCCcccEEeeecCcC
Q 001998 857 NDYAPSSSLSLTAFPKLKELTLFHLDGCEEWDFGKEDVIIMPQLCYLDIRFCRK 910 (984)
Q Consensus 857 ~~l~~~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~ 910 (984)
+..+++|+.|.+.++. +... .+..+++|+.|+|++|+.
T Consensus 320 ----------~~~l~~L~~L~L~~N~-l~~~-----~~~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 320 ----------QPQFDRLENLYLDHNS-IVTL-----KLSTHHTLKNLTLSHNDW 357 (597)
T ss_dssp ----------HHHHTTCSEEECCSSC-CCCC-----CCCTTCCCSEEECCSSCE
T ss_pred ----------cccCCCCCEEECCCCC-CCCc-----ChhhcCCCCEEEeeCCCC
Confidence 3468888888887753 2222 245789999999999984
No 42
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.85 E-value=8.3e-21 Score=209.19 Aligned_cols=289 Identities=18% Similarity=0.153 Sum_probs=161.8
Q ss_pred eeEEEEEecCcccccccccCCCceeEEeccCCCcchhhhHHhhhccccccee-cCCCCccccC-cccccccCccceEEec
Q 001998 545 LRHSILVLDKVASFPVSIFNAKKLRSLLIHSPLEVLSPVLKGLFDHLTYGED-DGGENTVHDI-PREIEKLIHLRSLRLA 622 (984)
Q Consensus 545 ~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lrv-~l~~~~i~~l-p~~i~~L~~Lr~L~L~ 622 (984)
++.+.+..+.+..+|..+. ++|++|++.++. +....+..|.+++.|+. ++++|.+..+ |..++++++|++|+|+
T Consensus 35 l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~--i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 35 LRVVQCSDLGLKAVPKEIS--PDTTLLDLQNND--ISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp TTEEECCSSCCSSCCSCCC--TTCCEEECCSSC--CCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred CCEEECCCCCccccCCCCC--CCCeEEECCCCc--CCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 4555555555555554442 567777776665 33333444666666666 7776666655 5566667777777777
Q ss_pred CCCccccchhhccCCcccEEecccccccccccc-cccCCCCCCeEEeccCCCc--ccCCccCCCCCCCCcCCceEecCCC
Q 001998 623 GLKIEELPETCCKLFNLQTLDINECYRLKRLPQ-GVGSLVNLRHLVVSLNGDL--DYLPKGVERLTSLRTLREFVVSSTG 699 (984)
Q Consensus 623 ~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~-~i~~L~~L~~L~l~~~~~l--~~~p~~i~~l~~L~~L~~~~~~~~~ 699 (984)
+|.++.+|..+. ++|++|++++|. +..+|. .+.++++|++|++++|... ...|..+..+ +|+.|++..+....
T Consensus 111 ~n~l~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 111 KNHLVEIPPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG 186 (332)
T ss_dssp SSCCCSCCSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred CCcCCccCcccc--ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence 777666666554 667777777666 555554 3566777777777666321 1233344444 55555543322110
Q ss_pred CcccccccccccccccccCCCeeEEcCCCCCCChhhhhHhcccCCCCCCeEEEEEcCCcccccCcCchhhccHHHHhhcC
Q 001998 700 GKYCTKACKVEGLRQLNHLRGTLRIRGLGNVTDVEEAEKADLEKKKNIVGLELRFDKEEAATEGINEENEINHQAISEAL 779 (984)
Q Consensus 700 ~~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~l 779 (984)
+.. ...++|+.|++++|..... .+..+
T Consensus 187 ------------------------------l~~---------~~~~~L~~L~l~~n~i~~~--------------~~~~l 213 (332)
T 2ft3_A 187 ------------------------------IPK---------DLPETLNELHLDHNKIQAI--------------ELEDL 213 (332)
T ss_dssp ------------------------------CCS---------SSCSSCSCCBCCSSCCCCC--------------CTTSS
T ss_pred ------------------------------cCc---------cccCCCCEEECCCCcCCcc--------------CHHHh
Confidence 000 0013566666666554322 12345
Q ss_pred CCCCCCCeEEEeecCCCCCCCchhhcCCCCcEEEEeCcCCCCcCCC-CCCCCCcceeeeccccCceEecceecCccCCCC
Q 001998 780 RPPPDLEALEIMHYKGQTAFPSWIVSLNKLKKLKLSSCCKCEIMPP-LGALPSLEILQIQRMESVKRVGVEFLGIESFND 858 (984)
Q Consensus 780 ~~~~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~l~~-l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~~~~ 858 (984)
..+++|++|++++|.+....|.++..+++|+.|++++|... .+|. ++.+++|++|++++|. +..++...+.
T Consensus 214 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~-l~~~~~~~~~------ 285 (332)
T 2ft3_A 214 LRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNN-ITKVGVNDFC------ 285 (332)
T ss_dssp TTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSC-CCBCCTTSSS------
T ss_pred cCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCC-CCccChhHcc------
Confidence 66677777777777776633446777777777777777555 3443 7777777777777665 3333221110
Q ss_pred CCCCCCccCcccccccccccccCCCCcccccCCCCcccCCcccEEeeecCcCC--CCCCcCCCCCCCcCeEEeccCc
Q 001998 859 YAPSSSLSLTAFPKLKELTLFHLDGCEEWDFGKEDVIIMPQLCYLDIRFCRKL--KSLPDQLLQSSTLEKLRIIRAP 933 (984)
Q Consensus 859 l~~~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l--~~lp~~~~~l~~L~~L~i~~c~ 933 (984)
.+. . ....++|+.|++.+|+.. ...|..+..+++|+.+++++|.
T Consensus 286 -------------~~~--------------~----~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 286 -------------PVG--------------F----GVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp -------------CSS--------------C----CSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred -------------ccc--------------c----ccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 000 0 002466777777777643 2344556667777777777764
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.84 E-value=2.5e-20 Score=205.28 Aligned_cols=97 Identities=24% Similarity=0.300 Sum_probs=49.4
Q ss_pred ccee-cCCCCccccCcc-cccccCccceEEecCCCcccc-chhhccCCcccEEecccccccccccccccCCCCCCeEEec
Q 001998 593 YGED-DGGENTVHDIPR-EIEKLIHLRSLRLAGLKIEEL-PETCCKLFNLQTLDINECYRLKRLPQGVGSLVNLRHLVVS 669 (984)
Q Consensus 593 ~Lrv-~l~~~~i~~lp~-~i~~L~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~ 669 (984)
.|++ ++++|.+..+|. .++++++|++|+|++|.++.+ |..++++++|++|++++|. ++.+|..+. ++|++|+++
T Consensus 53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~--~~L~~L~l~ 129 (330)
T 1xku_A 53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-LKELPEKMP--KTLQELRVH 129 (330)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CSBCCSSCC--TTCCEEECC
T ss_pred CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc-CCccChhhc--ccccEEECC
Confidence 3444 555555555443 455555555555555555544 4455555555555555554 455554443 455555555
Q ss_pred cCCCcccCCc-cCCCCCCCCcCCce
Q 001998 670 LNGDLDYLPK-GVERLTSLRTLREF 693 (984)
Q Consensus 670 ~~~~l~~~p~-~i~~l~~L~~L~~~ 693 (984)
+| .+..++. .+.++++|+.|++.
T Consensus 130 ~n-~l~~~~~~~~~~l~~L~~L~l~ 153 (330)
T 1xku_A 130 EN-EITKVRKSVFNGLNQMIVVELG 153 (330)
T ss_dssp SS-CCCBBCHHHHTTCTTCCEEECC
T ss_pred CC-cccccCHhHhcCCccccEEECC
Confidence 55 2333332 24555555555443
No 44
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.83 E-value=1.1e-20 Score=207.26 Aligned_cols=201 Identities=22% Similarity=0.328 Sum_probs=150.5
Q ss_pred hccccccee-cCCCCccccCcccccccCccceEEecCCCccccchhhccCCcccEEecccccccccccccccC-------
Q 001998 588 FDHLTYGED-DGGENTVHDIPREIEKLIHLRSLRLAGLKIEELPETCCKLFNLQTLDINECYRLKRLPQGVGS------- 659 (984)
Q Consensus 588 ~~~l~~Lrv-~l~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~------- 659 (984)
+.+++.|+. ++++|.+..+|..++++++|++|+|++|.++.+|..++++++|++|++++|..+..+|..+..
T Consensus 100 l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~ 179 (328)
T 4fcg_A 100 AFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEH 179 (328)
T ss_dssp GGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCE
T ss_pred hhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhh
Confidence 333455555 555556667788888888888888888888888888888888888888888777788877654
Q ss_pred --CCCCCeEEeccCCCcccCCccCCCCCCCCcCCceEecCCCCcccccccccccccccccCCCeeEEcCCCCCCChhhhh
Q 001998 660 --LVNLRHLVVSLNGDLDYLPKGVERLTSLRTLREFVVSSTGGKYCTKACKVEGLRQLNHLRGTLRIRGLGNVTDVEEAE 737 (984)
Q Consensus 660 --L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~ 737 (984)
+++|++|++++| .+..+|..++++++|+.|++..+.... +.
T Consensus 180 ~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~N~l~~------------------------------l~------ 222 (328)
T 4fcg_A 180 QGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNSPLSA------------------------------LG------ 222 (328)
T ss_dssp EESTTCCEEEEEEE-CCCCCCGGGGGCTTCCEEEEESSCCCC------------------------------CC------
T ss_pred ccCCCCCEEECcCC-CcCcchHhhcCCCCCCEEEccCCCCCc------------------------------Cc------
Confidence 888888888887 556778778888888887765433221 00
Q ss_pred HhcccCCCCCCeEEEEEcCCcccccCcCchhhccHHHHhhcCCCCCCCCeEEEeecCCCCCCCchhhcCCCCcEEEEeCc
Q 001998 738 KADLEKKKNIVGLELRFDKEEAATEGINEENEINHQAISEALRPPPDLEALEIMHYKGQTAFPSWIVSLNKLKKLKLSSC 817 (984)
Q Consensus 738 ~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~ 817 (984)
..+..+++|+.|++++|..... ++..+..+++|++|++++|...+.+|.++..+++|+.|+|++|
T Consensus 223 -~~l~~l~~L~~L~Ls~n~~~~~--------------~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n 287 (328)
T 4fcg_A 223 -PAIHHLPKLEELDLRGCTALRN--------------YPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGC 287 (328)
T ss_dssp -GGGGGCTTCCEEECTTCTTCCB--------------CCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTC
T ss_pred -hhhccCCCCCEEECcCCcchhh--------------hHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCC
Confidence 1133455667777766554322 3456777889999999999888889999999999999999999
Q ss_pred CCCCcCCC-CCCCCCcceeeeccc
Q 001998 818 CKCEIMPP-LGALPSLEILQIQRM 840 (984)
Q Consensus 818 ~~~~~l~~-l~~Lp~L~~L~L~~~ 840 (984)
...+.+|. ++.+++|+.+.+..+
T Consensus 288 ~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 288 VNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp TTCCCCCGGGGGSCTTCEEECCGG
T ss_pred CchhhccHHHhhccCceEEeCCHH
Confidence 98888877 899999999988754
No 45
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.82 E-value=8.3e-21 Score=206.83 Aligned_cols=247 Identities=17% Similarity=0.150 Sum_probs=177.5
Q ss_pred cceeEEEEEecCcc---cccccccCCCceeEEeccC-CCcchhhhHHhhhccccccee-cCCCCccc-cCcccccccCcc
Q 001998 543 DKLRHSILVLDKVA---SFPVSIFNAKKLRSLLIHS-PLEVLSPVLKGLFDHLTYGED-DGGENTVH-DIPREIEKLIHL 616 (984)
Q Consensus 543 ~~~r~l~l~~~~~~---~~~~~~~~~~~Lr~L~l~~-~~~~~~~~~~~~~~~l~~Lrv-~l~~~~i~-~lp~~i~~L~~L 616 (984)
.+++++.+..+.+. .+|..+.++++|++|++.+ +. +....+..|.+++.|+. ++++|.+. .+|..++++++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~--l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN--LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETT--EESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCc--ccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCC
Confidence 46778888777765 3567777788888888874 43 22223445677777777 77777765 567777777777
Q ss_pred ceEEecCCCcc-ccchhhccCCcccEEecccccccccccccccCCC-CCCeEEeccCCCcccCCccCCCCCCCCcCCceE
Q 001998 617 RSLRLAGLKIE-ELPETCCKLFNLQTLDINECYRLKRLPQGVGSLV-NLRHLVVSLNGDLDYLPKGVERLTSLRTLREFV 694 (984)
Q Consensus 617 r~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~-~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~ 694 (984)
++|+|++|.+. .+|..+.++++|++|++++|.....+|..+..++ +|++|++++|.....+|..++.++ |+.|++..
T Consensus 128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~ 206 (313)
T 1ogq_A 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSR 206 (313)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCS
T ss_pred CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcC
Confidence 77777777776 6677777777777777777763336777777776 777777777744345666666665 66665433
Q ss_pred ecCCCCcccccccccccccccccCCCeeEEcCCCCCCChhhhhHhcccCCCCCCeEEEEEcCCcccccCcCchhhccHHH
Q 001998 695 VSSTGGKYCTKACKVEGLRQLNHLRGTLRIRGLGNVTDVEEAEKADLEKKKNIVGLELRFDKEEAATEGINEENEINHQA 774 (984)
Q Consensus 695 ~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~ 774 (984)
+... ......+..+++|+.|+++.|.....
T Consensus 207 N~l~------------------------------------~~~~~~~~~l~~L~~L~L~~N~l~~~-------------- 236 (313)
T 1ogq_A 207 NMLE------------------------------------GDASVLFGSDKNTQKIHLAKNSLAFD-------------- 236 (313)
T ss_dssp SEEE------------------------------------ECCGGGCCTTSCCSEEECCSSEECCB--------------
T ss_pred Cccc------------------------------------CcCCHHHhcCCCCCEEECCCCceeee--------------
Confidence 2111 01113356678899999988866422
Q ss_pred HhhcCCCCCCCCeEEEeecCCCCCCCchhhcCCCCcEEEEeCcCCCCcCCCCCCCCCcceeeeccccCc
Q 001998 775 ISEALRPPPDLEALEIMHYKGQTAFPSWIVSLNKLKKLKLSSCCKCEIMPPLGALPSLEILQIQRMESV 843 (984)
Q Consensus 775 ~~~~l~~~~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~l~~l~~Lp~L~~L~L~~~~~l 843 (984)
+..+..+++|++|++++|.+.+.+|.++..+++|+.|+|++|.....+|..+.+++|+.|++.+|+.+
T Consensus 237 -~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 237 -LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCL 304 (313)
T ss_dssp -GGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEE
T ss_pred -cCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCc
Confidence 23366789999999999999866999999999999999999988878888899999999999998743
No 46
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.82 E-value=6.7e-21 Score=207.58 Aligned_cols=249 Identities=16% Similarity=0.146 Sum_probs=142.3
Q ss_pred CceeEEeccCCCcchhh--hHHhhhccccccee-cCCC-Cccc-cCcccccccCccceEEecCCCcc-ccchhhccCCcc
Q 001998 566 KKLRSLLIHSPLEVLSP--VLKGLFDHLTYGED-DGGE-NTVH-DIPREIEKLIHLRSLRLAGLKIE-ELPETCCKLFNL 639 (984)
Q Consensus 566 ~~Lr~L~l~~~~~~~~~--~~~~~~~~l~~Lrv-~l~~-~~i~-~lp~~i~~L~~Lr~L~L~~~~i~-~lp~~i~~L~~L 639 (984)
.+++.|++.++. +.. ..+..|.+++.|++ ++++ |.+. .+|..++++++|++|+|++|.++ .+|..++++++|
T Consensus 50 ~~l~~L~L~~~~--l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLN--LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127 (313)
T ss_dssp CCEEEEEEECCC--CSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred ceEEEEECCCCC--ccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCC
Confidence 467788887775 222 23344666666666 6663 4443 45666666666666666666665 566666666666
Q ss_pred cEEecccccccccccccccCCCCCCeEEeccCCCcccCCccCCCCC-CCCcCCceEecCCCCcccccccccccccccccC
Q 001998 640 QTLDINECYRLKRLPQGVGSLVNLRHLVVSLNGDLDYLPKGVERLT-SLRTLREFVVSSTGGKYCTKACKVEGLRQLNHL 718 (984)
Q Consensus 640 ~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~-~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L 718 (984)
++|++++|.....+|..+..+++|++|++++|.....+|..++.++ +|+.|++.
T Consensus 128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~------------------------- 182 (313)
T 1ogq_A 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTIS------------------------- 182 (313)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECC-------------------------
T ss_pred CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECc-------------------------
Confidence 6666666663335666666666666666666633224555454444 44444332
Q ss_pred CCeeEEcCCCCCCChhhhhHhcccCCCCCCeEEEEEcCCcccccCcCchhhccHHHHhhcCCCCCCCCeEEEeecCCCCC
Q 001998 719 RGTLRIRGLGNVTDVEEAEKADLEKKKNIVGLELRFDKEEAATEGINEENEINHQAISEALRPPPDLEALEIMHYKGQTA 798 (984)
Q Consensus 719 ~~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~ 798 (984)
.|..... ++..+..++ |++|++++|.+.+.
T Consensus 183 -----------------------------------~N~l~~~--------------~~~~~~~l~-L~~L~Ls~N~l~~~ 212 (313)
T 1ogq_A 183 -----------------------------------RNRLTGK--------------IPPTFANLN-LAFVDLSRNMLEGD 212 (313)
T ss_dssp -----------------------------------SSEEEEE--------------CCGGGGGCC-CSEEECCSSEEEEC
T ss_pred -----------------------------------CCeeecc--------------CChHHhCCc-ccEEECcCCcccCc
Confidence 2211100 111122222 66666666665554
Q ss_pred CCchhhcCCCCcEEEEeCcCCCCcCCCCCCCCCcceeeeccccCceEecceecCccCCCCCCCCCCccCccccccccccc
Q 001998 799 FPSWIVSLNKLKKLKLSSCCKCEIMPPLGALPSLEILQIQRMESVKRVGVEFLGIESFNDYAPSSSLSLTAFPKLKELTL 878 (984)
Q Consensus 799 lp~~l~~l~~L~~L~L~~~~~~~~l~~l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~f~~L~~L~l 878 (984)
.|..+..+++|+.|+|++|.....+|.+..+++|++|++++|. +.
T Consensus 213 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~-l~---------------------------------- 257 (313)
T 1ogq_A 213 ASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNR-IY---------------------------------- 257 (313)
T ss_dssp CGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSC-CE----------------------------------
T ss_pred CCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCc-cc----------------------------------
Confidence 5556666666666666666655555556666666666666554 11
Q ss_pred ccCCCCcccccCCCCcccCCcccEEeeecCcCCCCCCcCCCCCCCcCeEEeccCcchH
Q 001998 879 FHLDGCEEWDFGKEDVIIMPQLCYLDIRFCRKLKSLPDQLLQSSTLEKLRIIRAPILR 936 (984)
Q Consensus 879 ~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~i~~c~~l~ 936 (984)
...+..+..+++|++|++++|+....+|.. ..+++|+.|++.+||.+.
T Consensus 258 ---------~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 258 ---------GTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp ---------ECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEE
T ss_pred ---------CcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCcc
Confidence 011222345677888888888655567765 667788888888887543
No 47
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.81 E-value=1.2e-19 Score=219.29 Aligned_cols=147 Identities=18% Similarity=0.204 Sum_probs=119.1
Q ss_pred cccceeEEEEEecCccccc-ccccCCCceeEEeccCCCcchhhhHHhhhccccccee-cCCCCccccCcc-cccccCccc
Q 001998 541 SQDKLRHSILVLDKVASFP-VSIFNAKKLRSLLIHSPLEVLSPVLKGLFDHLTYGED-DGGENTVHDIPR-EIEKLIHLR 617 (984)
Q Consensus 541 ~~~~~r~l~l~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lrv-~l~~~~i~~lp~-~i~~L~~Lr 617 (984)
.+..+++|.+..+.+..++ ..|.++++|++|++++|. +..+.+..|.+++.|++ ++++|.+..+|. .|++|.+|+
T Consensus 50 lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~--i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~ 127 (635)
T 4g8a_A 50 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE--IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 127 (635)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC--CCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCC
T ss_pred CCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCc--CCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCC
Confidence 5678899999999888775 468899999999999987 55555667899999999 999999999875 578999999
Q ss_pred eEEecCCCccccch-hhccCCcccEEecccccccc--cccccccCCCCCCeEEeccCCCcccCCccCCCCCCCCcC
Q 001998 618 SLRLAGLKIEELPE-TCCKLFNLQTLDINECYRLK--RLPQGVGSLVNLRHLVVSLNGDLDYLPKGVERLTSLRTL 690 (984)
Q Consensus 618 ~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~--~lP~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L 690 (984)
+|+|++|.++.+|. .+++|++|++|++++|. +. .+|..+..+++|++|++++|......|..+..+.+++.+
T Consensus 128 ~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~ 202 (635)
T 4g8a_A 128 KLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 202 (635)
T ss_dssp EEECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTC
T ss_pred EEECCCCcCCCCChhhhhcCcccCeeccccCc-cccCCCchhhccchhhhhhcccCccccccccccccchhhhhhh
Confidence 99999999998886 58999999999999997 54 367888999999999999984333334445555555543
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.81 E-value=3.4e-19 Score=196.20 Aligned_cols=289 Identities=17% Similarity=0.181 Sum_probs=193.6
Q ss_pred ccccee-cCCCCccccCcccccccCccceEEecCCCccccch-hhccCCcccEEecccccccccc-cccccCCCCCCeEE
Q 001998 591 LTYGED-DGGENTVHDIPREIEKLIHLRSLRLAGLKIEELPE-TCCKLFNLQTLDINECYRLKRL-PQGVGSLVNLRHLV 667 (984)
Q Consensus 591 l~~Lrv-~l~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~l-P~~i~~L~~L~~L~ 667 (984)
...+++ +++++.+..+|..+. ++|++|+|++|.++.+|. .++++++|++|++++|. +..+ |..+.++++|++|+
T Consensus 30 ~c~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~ 106 (330)
T 1xku_A 30 QCHLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK-ISKISPGAFAPLVKLERLY 106 (330)
T ss_dssp EEETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEE
T ss_pred cCCCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCc-CCeeCHHHhcCCCCCCEEE
Confidence 345677 888888888887665 689999999999998876 79999999999999998 6665 88899999999999
Q ss_pred eccCCCcccCCccCCCCCCCCcCCceEecCCCCcccccccccccccccccCCCeeEEcCCCCCCChhhhhHhcccCCCCC
Q 001998 668 VSLNGDLDYLPKGVERLTSLRTLREFVVSSTGGKYCTKACKVEGLRQLNHLRGTLRIRGLGNVTDVEEAEKADLEKKKNI 747 (984)
Q Consensus 668 l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~~~~L 747 (984)
+++| .+..+|..+. ++|+.|++..+.... .....+..+++|
T Consensus 107 Ls~n-~l~~l~~~~~--~~L~~L~l~~n~l~~------------------------------------~~~~~~~~l~~L 147 (330)
T 1xku_A 107 LSKN-QLKELPEKMP--KTLQELRVHENEITK------------------------------------VRKSVFNGLNQM 147 (330)
T ss_dssp CCSS-CCSBCCSSCC--TTCCEEECCSSCCCB------------------------------------BCHHHHTTCTTC
T ss_pred CCCC-cCCccChhhc--ccccEEECCCCcccc------------------------------------cCHhHhcCCccc
Confidence 9998 5677887654 677777654332211 011224456677
Q ss_pred CeEEEEEcCCcccccCcCchhhccHHHHhhcCCCCCCCCeEEEeecCCCCCCCchhhcCCCCcEEEEeCcCCCCcCCC-C
Q 001998 748 VGLELRFDKEEAATEGINEENEINHQAISEALRPPPDLEALEIMHYKGQTAFPSWIVSLNKLKKLKLSSCCKCEIMPP-L 826 (984)
Q Consensus 748 ~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~l~~-l 826 (984)
+.|+++.|..... ...+..+..+++|++|++++|.+.. +|..+. ++|++|++++|......+. +
T Consensus 148 ~~L~l~~n~l~~~------------~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~ 212 (330)
T 1xku_A 148 IVVELGTNPLKSS------------GIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASL 212 (330)
T ss_dssp CEEECCSSCCCGG------------GBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGG
T ss_pred cEEECCCCcCCcc------------CcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHh
Confidence 7777776654321 0122345567788888888888776 776653 7888888888866554443 7
Q ss_pred CCCCCcceeeeccccCceEecceecCccCCCCCCCCCCccCcccccccccccccCCCCcccccCCCCcccCCcccEEeee
Q 001998 827 GALPSLEILQIQRMESVKRVGVEFLGIESFNDYAPSSSLSLTAFPKLKELTLFHLDGCEEWDFGKEDVIIMPQLCYLDIR 906 (984)
Q Consensus 827 ~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~ 906 (984)
+.+++|+.|++++|. +..++.. .+..+++|+.|.+.++ .+. ..+..+..+++|++|+++
T Consensus 213 ~~l~~L~~L~Ls~n~-l~~~~~~----------------~~~~l~~L~~L~L~~N-~l~---~lp~~l~~l~~L~~L~l~ 271 (330)
T 1xku_A 213 KGLNNLAKLGLSFNS-ISAVDNG----------------SLANTPHLRELHLNNN-KLV---KVPGGLADHKYIQVVYLH 271 (330)
T ss_dssp TTCTTCCEEECCSSC-CCEECTT----------------TGGGSTTCCEEECCSS-CCS---SCCTTTTTCSSCCEEECC
T ss_pred cCCCCCCEEECCCCc-CceeChh----------------hccCCCCCCEEECCCC-cCc---cCChhhccCCCcCEEECC
Confidence 788888888888775 4333221 1345677777777665 222 223345678888888888
Q ss_pred cCcCCCCCCcCCC-------CCCCcCeEEeccCcchHHhhccCCCCCccccccccceeecCc
Q 001998 907 FCRKLKSLPDQLL-------QSSTLEKLRIIRAPILRERFKKDTGEDWSKISHIRDIQIDHE 961 (984)
Q Consensus 907 ~c~~l~~lp~~~~-------~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~i~~i~~l~~~~~ 961 (984)
+|+ +..+|.... ..++|+.|++.+||..... .....+.....+..+++.+|
T Consensus 272 ~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~---i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 272 NNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE---IQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp SSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGG---SCGGGGTTCCCGGGEEC---
T ss_pred CCc-CCccChhhcCCcccccccccccceEeecCcccccc---cCccccccccceeEEEeccc
Confidence 885 666664332 2367888888888853211 11233445566666666554
No 49
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.80 E-value=4e-19 Score=195.67 Aligned_cols=285 Identities=18% Similarity=0.147 Sum_probs=162.6
Q ss_pred cee-cCCCCccccCcccccccCccceEEecCCCccccc-hhhccCCcccEEecccccccccc-cccccCCCCCCeEEecc
Q 001998 594 GED-DGGENTVHDIPREIEKLIHLRSLRLAGLKIEELP-ETCCKLFNLQTLDINECYRLKRL-PQGVGSLVNLRHLVVSL 670 (984)
Q Consensus 594 Lrv-~l~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~l-P~~i~~L~~L~~L~l~~ 670 (984)
+++ +++++.+..+|..+. .+|++|+|++|.+..+| ..+.++++|++|++++|. +..+ |..+.++++|++|++++
T Consensus 35 l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 35 LRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK-ISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp TTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECGGGSTTCTTCCEEECCS
T ss_pred CCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCc-cCccCHhHhhCcCCCCEEECCC
Confidence 444 555555555655443 45666666666666553 356666666666666665 4433 45566666666666666
Q ss_pred CCCcccCCccCCCCCCCCcCCceEecCCCCcccccccccccccccccCCCeeEEcCCCCCCChhhhhHhcccCCCCCCeE
Q 001998 671 NGDLDYLPKGVERLTSLRTLREFVVSSTGGKYCTKACKVEGLRQLNHLRGTLRIRGLGNVTDVEEAEKADLEKKKNIVGL 750 (984)
Q Consensus 671 ~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L 750 (984)
| .+..+|..+. ++|++|++..+.... + ....+..+++|+.|
T Consensus 112 n-~l~~l~~~~~--~~L~~L~l~~n~i~~----------------------~--------------~~~~~~~l~~L~~L 152 (332)
T 2ft3_A 112 N-HLVEIPPNLP--SSLVELRIHDNRIRK----------------------V--------------PKGVFSGLRNMNCI 152 (332)
T ss_dssp S-CCCSCCSSCC--TTCCEEECCSSCCCC----------------------C--------------CSGGGSSCSSCCEE
T ss_pred C-cCCccCcccc--ccCCEEECCCCccCc----------------------c--------------CHhHhCCCccCCEE
Confidence 5 3445554443 455555443221110 0 00113344555566
Q ss_pred EEEEcCCcccccCcCchhhccHHHHhhcCCCCCCCCeEEEeecCCCCCCCchhhcCCCCcEEEEeCcCCCCcCC-CCCCC
Q 001998 751 ELRFDKEEAATEGINEENEINHQAISEALRPPPDLEALEIMHYKGQTAFPSWIVSLNKLKKLKLSSCCKCEIMP-PLGAL 829 (984)
Q Consensus 751 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~l~-~l~~L 829 (984)
+++.|..... ...+..+..+ +|++|++++|.+.. +|..+. ++|++|++++|......+ .+..+
T Consensus 153 ~l~~n~l~~~------------~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l 216 (332)
T 2ft3_A 153 EMGGNPLENS------------GFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRY 216 (332)
T ss_dssp ECCSCCCBGG------------GSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTC
T ss_pred ECCCCccccC------------CCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCC
Confidence 6655544211 0112334444 78888888887776 776553 688888888886665443 37788
Q ss_pred CCcceeeeccccCceEecceecCccCCCCCCCCCCccCcccccccccccccCCCCcccccCCCCcccCCcccEEeeecCc
Q 001998 830 PSLEILQIQRMESVKRVGVEFLGIESFNDYAPSSSLSLTAFPKLKELTLFHLDGCEEWDFGKEDVIIMPQLCYLDIRFCR 909 (984)
Q Consensus 830 p~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~ 909 (984)
++|++|++++|. +..++.. .+..+++|+.|.+.++ .+. ..+..+..+++|++|++++|+
T Consensus 217 ~~L~~L~L~~N~-l~~~~~~----------------~~~~l~~L~~L~L~~N-~l~---~lp~~l~~l~~L~~L~l~~N~ 275 (332)
T 2ft3_A 217 SKLYRLGLGHNQ-IRMIENG----------------SLSFLPTLRELHLDNN-KLS---RVPAGLPDLKLLQVVYLHTNN 275 (332)
T ss_dssp TTCSCCBCCSSC-CCCCCTT----------------GGGGCTTCCEEECCSS-CCC---BCCTTGGGCTTCCEEECCSSC
T ss_pred CCCCEEECCCCc-CCcCChh----------------HhhCCCCCCEEECCCC-cCe---ecChhhhcCccCCEEECCCCC
Confidence 888888888775 3322211 1345677777777654 222 223346679999999999996
Q ss_pred CCCCCCcCCC-C------CCCcCeEEeccCcchHHhhccCCCCCccccccccceeecCc
Q 001998 910 KLKSLPDQLL-Q------SSTLEKLRIIRAPILRERFKKDTGEDWSKISHIRDIQIDHE 961 (984)
Q Consensus 910 ~l~~lp~~~~-~------l~~L~~L~i~~c~~l~~~~~~~~~~~~~~i~~i~~l~~~~~ 961 (984)
+..+|.... . .++|+.|++.+||...... ....+..+..+..+.+.++
T Consensus 276 -l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~---~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 276 -ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEV---QPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp -CCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGS---CGGGGTTBCCSTTEEC---
T ss_pred -CCccChhHccccccccccccccceEeecCccccccc---Ccccccccchhhhhhcccc
Confidence 667664322 2 4679999999999642111 1233455666777766554
No 50
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.79 E-value=5.8e-19 Score=202.11 Aligned_cols=245 Identities=18% Similarity=0.117 Sum_probs=161.3
Q ss_pred ccceeEEEEEecCcccccccccCCCceeEEeccCCCcchhhhHHhhhcccccc-------------ee-cCCCCccccCc
Q 001998 542 QDKLRHSILVLDKVASFPVSIFNAKKLRSLLIHSPLEVLSPVLKGLFDHLTYG-------------ED-DGGENTVHDIP 607 (984)
Q Consensus 542 ~~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L-------------rv-~l~~~~i~~lp 607 (984)
...++.+.+.++.+..+|..+.++++|+.|++.++. +....+..+.+++.| +. ++++|.+..+|
T Consensus 10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~--~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp 87 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSE--WERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLP 87 (454)
T ss_dssp ------------------------CCHHHHHHHHHH--HHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCC
T ss_pred cccchhhhcccCchhhCChhHhcccchhhhhccCCc--ccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCC
Confidence 456888889888888889999999999999998875 333344445555554 77 99999998888
Q ss_pred ccccccCccceEEecCCCccccchhhccCCcccEEecccccccccccccccCCCCCCeEEeccCCCcccCCccCCCCCCC
Q 001998 608 REIEKLIHLRSLRLAGLKIEELPETCCKLFNLQTLDINECYRLKRLPQGVGSLVNLRHLVVSLNGDLDYLPKGVERLTSL 687 (984)
Q Consensus 608 ~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L 687 (984)
.. .++|++|++++|.++.+|.. +.+|++|++++|. +..+|.. .++|++|++++| .+..+| .++++++|
T Consensus 88 ~~---~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~-l~~l~~~---~~~L~~L~L~~n-~l~~lp-~~~~l~~L 155 (454)
T 1jl5_A 88 EL---PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNN-LKALSDL---PPLLEYLGVSNN-QLEKLP-ELQNSSFL 155 (454)
T ss_dssp SC---CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSC-CSCCCSC---CTTCCEEECCSS-CCSSCC-CCTTCTTC
T ss_pred CC---cCCCCEEEccCCcCCccccc---cCCCcEEECCCCc-cCcccCC---CCCCCEEECcCC-CCCCCc-ccCCCCCC
Confidence 73 47899999999999999864 4789999999987 7777652 279999999998 566788 69999999
Q ss_pred CcCCceEecCCCCcccccccccccccccccCCCeeEEcCCCCCCChhhhhHhcccCCCCCCeEEEEEcCCcccccCcCch
Q 001998 688 RTLREFVVSSTGGKYCTKACKVEGLRQLNHLRGTLRIRGLGNVTDVEEAEKADLEKKKNIVGLELRFDKEEAATEGINEE 767 (984)
Q Consensus 688 ~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~ 767 (984)
+.|++..+..... ...+ .+|+ .|.+.+. .+..+ ..+..+++|+.|++++|.....
T Consensus 156 ~~L~l~~N~l~~l-----p~~~------~~L~-~L~L~~n-~l~~l-----~~~~~l~~L~~L~l~~N~l~~l------- 210 (454)
T 1jl5_A 156 KIIDVDNNSLKKL-----PDLP------PSLE-FIAAGNN-QLEEL-----PELQNLPFLTAIYADNNSLKKL------- 210 (454)
T ss_dssp CEEECCSSCCSCC-----CCCC------TTCC-EEECCSS-CCSSC-----CCCTTCTTCCEEECCSSCCSSC-------
T ss_pred CEEECCCCcCccc-----CCCc------cccc-EEECcCC-cCCcC-----ccccCCCCCCEEECCCCcCCcC-------
Confidence 9998876654421 1111 1333 4544443 22222 1367889999999998875422
Q ss_pred hhccHHHHhhcCCCCCCCCeEEEeecCCCCCCCchhhcCCCCcEEEEeCcCCCCcCCCCCCCCCcceeeecccc
Q 001998 768 NEINHQAISEALRPPPDLEALEIMHYKGQTAFPSWIVSLNKLKKLKLSSCCKCEIMPPLGALPSLEILQIQRME 841 (984)
Q Consensus 768 ~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~l~~l~~Lp~L~~L~L~~~~ 841 (984)
+ ..+++|++|++++|.+.. +|. ++.+++|+.|++++|.... +|. .+++|+.|++++|.
T Consensus 211 --------~---~~~~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~l~~N~l~~-l~~--~~~~L~~L~l~~N~ 268 (454)
T 1jl5_A 211 --------P---DLPLSLESIVAGNNILEE-LPE-LQNLPFLTTIYADNNLLKT-LPD--LPPSLEALNVRDNY 268 (454)
T ss_dssp --------C---CCCTTCCEEECCSSCCSS-CCC-CTTCTTCCEEECCSSCCSS-CCS--CCTTCCEEECCSSC
T ss_pred --------C---CCcCcccEEECcCCcCCc-ccc-cCCCCCCCEEECCCCcCCc-ccc--cccccCEEECCCCc
Confidence 1 113589999999999886 885 7899999999999996554 444 24788888888775
No 51
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.78 E-value=2.5e-18 Score=207.83 Aligned_cols=139 Identities=24% Similarity=0.173 Sum_probs=115.7
Q ss_pred cccccccccCCCceeEEeccCCCcchhhhHHhhhccccccee-cCCCCccccCcc-cccccCccceEEecCCCccccch-
Q 001998 555 VASFPVSIFNAKKLRSLLIHSPLEVLSPVLKGLFDHLTYGED-DGGENTVHDIPR-EIEKLIHLRSLRLAGLKIEELPE- 631 (984)
Q Consensus 555 ~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lrv-~l~~~~i~~lp~-~i~~L~~Lr~L~L~~~~i~~lp~- 631 (984)
+..+|..+. ++++.|++++|. +..+.+..|.+++.|++ ++++|.+..+|+ .|++|++|++|+|++|.|+.+|.
T Consensus 43 l~~vP~~lp--~~~~~LdLs~N~--i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~ 118 (635)
T 4g8a_A 43 FYKIPDNLP--FSTKNLDLSFNP--LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG 118 (635)
T ss_dssp CSSCCSSSC--TTCCEEECTTSC--CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGG
T ss_pred cCccCCCCC--cCCCEEEeeCCC--CCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHH
Confidence 445565543 479999999997 55555667999999999 999999999865 68999999999999999999986
Q ss_pred hhccCCcccEEecccccccccccc-cccCCCCCCeEEeccCCCcc-cCCccCCCCCCCCcCCceEecCC
Q 001998 632 TCCKLFNLQTLDINECYRLKRLPQ-GVGSLVNLRHLVVSLNGDLD-YLPKGVERLTSLRTLREFVVSST 698 (984)
Q Consensus 632 ~i~~L~~L~~L~L~~~~~l~~lP~-~i~~L~~L~~L~l~~~~~l~-~~p~~i~~l~~L~~L~~~~~~~~ 698 (984)
.+.+|++|++|++++|. ++.+|. .++++++|++|++++|.... .+|..++.+++|++|++..+...
T Consensus 119 ~f~~L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 186 (635)
T 4g8a_A 119 AFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 186 (635)
T ss_dssp GGTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred HhcCCCCCCEEECCCCc-CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccc
Confidence 58999999999999998 888875 48999999999999994322 35677899999999988766543
No 52
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.78 E-value=8.1e-18 Score=192.58 Aligned_cols=133 Identities=20% Similarity=0.284 Sum_probs=74.3
Q ss_pred ccceeEEEEEecCcccccccccCCCceeEEeccCCCcchhhhHHhhhccc-cccee-cCCCCccccCcccccccCccceE
Q 001998 542 QDKLRHSILVLDKVASFPVSIFNAKKLRSLLIHSPLEVLSPVLKGLFDHL-TYGED-DGGENTVHDIPREIEKLIHLRSL 619 (984)
Q Consensus 542 ~~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l-~~Lrv-~l~~~~i~~lp~~i~~L~~Lr~L 619 (984)
+.+++.+.+..+.+..+|.. .++|+.|++.+|. +.. +..+ +.|+. ++++|.+..+| .++++++|++|
T Consensus 90 ~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~--l~~-----l~~~~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L 158 (454)
T 1jl5_A 90 PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNN--LKA-----LSDLPPLLEYLGVSNNQLEKLP-ELQNSSFLKII 158 (454)
T ss_dssp CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSC--CSC-----CCSCCTTCCEEECCSSCCSSCC-CCTTCTTCCEE
T ss_pred cCCCCEEEccCCcCCccccc---cCCCcEEECCCCc--cCc-----ccCCCCCCCEEECcCCCCCCCc-ccCCCCCCCEE
Confidence 34566666666655554432 2566666666654 111 1111 45566 66666666666 36666666666
Q ss_pred EecCCCccccchhhccCCcccEEecccccccccccccccCCCCCCeEEeccCCCcccCCccCCCCCCCCcCCceE
Q 001998 620 RLAGLKIEELPETCCKLFNLQTLDINECYRLKRLPQGVGSLVNLRHLVVSLNGDLDYLPKGVERLTSLRTLREFV 694 (984)
Q Consensus 620 ~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~ 694 (984)
++++|.++.+|..+ .+|++|++++|. ++.+| +++++++|++|++++| .+..+|... ++|+.|++..
T Consensus 159 ~l~~N~l~~lp~~~---~~L~~L~L~~n~-l~~l~-~~~~l~~L~~L~l~~N-~l~~l~~~~---~~L~~L~l~~ 224 (454)
T 1jl5_A 159 DVDNNSLKKLPDLP---PSLEFIAAGNNQ-LEELP-ELQNLPFLTAIYADNN-SLKKLPDLP---LSLESIVAGN 224 (454)
T ss_dssp ECCSSCCSCCCCCC---TTCCEEECCSSC-CSSCC-CCTTCTTCCEEECCSS-CCSSCCCCC---TTCCEEECCS
T ss_pred ECCCCcCcccCCCc---ccccEEECcCCc-CCcCc-cccCCCCCCEEECCCC-cCCcCCCCc---CcccEEECcC
Confidence 66666666666443 366666666665 55566 3666666666666666 344444322 3555554443
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.77 E-value=4.9e-19 Score=196.84 Aligned_cols=269 Identities=19% Similarity=0.180 Sum_probs=133.0
Q ss_pred cCCCCccccCcccccccCccceEEecCCCccccch-hhccCCcccEEecccccccccc-cccccCCCCCCeEEeccCCCc
Q 001998 597 DGGENTVHDIPREIEKLIHLRSLRLAGLKIEELPE-TCCKLFNLQTLDINECYRLKRL-PQGVGSLVNLRHLVVSLNGDL 674 (984)
Q Consensus 597 ~l~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~l-P~~i~~L~~L~~L~l~~~~~l 674 (984)
+++++.+..+|..+. .+|++|++++|.++.+|. .+.++++|++|++++|. +..+ |..+.++++|++|++++| .+
T Consensus 37 ~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~l 112 (353)
T 2z80_A 37 KGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG-INTIEEDSFSSLGSLEHLDLSYN-YL 112 (353)
T ss_dssp ECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSS-CC
T ss_pred eCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCc-cCccCHhhcCCCCCCCEEECCCC-cC
Confidence 444455555554433 255555555555555544 45555555555555554 3333 233555555555555555 33
Q ss_pred ccCCcc-CCCCCCCCcCCceEecCCCCcccccccccccccccccCCCeeEEcCCCCCCChhhhhHhcccCCCCCCeEEEE
Q 001998 675 DYLPKG-VERLTSLRTLREFVVSSTGGKYCTKACKVEGLRQLNHLRGTLRIRGLGNVTDVEEAEKADLEKKKNIVGLELR 753 (984)
Q Consensus 675 ~~~p~~-i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~ 753 (984)
..+|.. ++++++|+.|++..+.... +.. ...+..+++|+.|+++
T Consensus 113 ~~~~~~~~~~l~~L~~L~L~~n~l~~------------l~~-----------------------~~~~~~l~~L~~L~l~ 157 (353)
T 2z80_A 113 SNLSSSWFKPLSSLTFLNLLGNPYKT------------LGE-----------------------TSLFSHLTKLQILRVG 157 (353)
T ss_dssp SSCCHHHHTTCTTCSEEECTTCCCSS------------SCS-----------------------SCSCTTCTTCCEEEEE
T ss_pred CcCCHhHhCCCccCCEEECCCCCCcc------------cCc-----------------------hhhhccCCCCcEEECC
Confidence 344433 4445555555443221110 000 0012233455555555
Q ss_pred EcC-CcccccCcCchhhccHHHHhhcCCCCCCCCeEEEeecCCCCCCCchhhcCCCCcEEEEeCcCCCCcCCC--CCCCC
Q 001998 754 FDK-EEAATEGINEENEINHQAISEALRPPPDLEALEIMHYKGQTAFPSWIVSLNKLKKLKLSSCCKCEIMPP--LGALP 830 (984)
Q Consensus 754 ~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~l~~--l~~Lp 830 (984)
.|. .... .+..+..+++|++|++++|.+.+..|.++..+++|++|++++|.... +|. ++.++
T Consensus 158 ~n~~~~~~--------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~~~ 222 (353)
T 2z80_A 158 NMDTFTKI--------------QRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL-LLEIFVDVTS 222 (353)
T ss_dssp ESSSCCEE--------------CTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTT-HHHHHHHHTT
T ss_pred CCcccccc--------------CHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcccc-chhhhhhhcc
Confidence 542 1111 12234445566666666666555445556666666666666664322 222 33456
Q ss_pred CcceeeeccccCceEecceecCccCCCCCCCCCCccCcccccccccccccCCCCccc--ccCCCCcccCCcccEEeeecC
Q 001998 831 SLEILQIQRMESVKRVGVEFLGIESFNDYAPSSSLSLTAFPKLKELTLFHLDGCEEW--DFGKEDVIIMPQLCYLDIRFC 908 (984)
Q Consensus 831 ~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~f~~L~~L~l~~l~~l~~~--~~~~~~~~~l~~L~~L~l~~c 908 (984)
+|+.|++++|. +..++...... ....+.++.+.+.++. +..- ...+..+..+++|++|++++|
T Consensus 223 ~L~~L~L~~n~-l~~~~~~~l~~-------------~~~~~~l~~l~L~~~~-l~~~~l~~l~~~l~~l~~L~~L~Ls~N 287 (353)
T 2z80_A 223 SVECLELRDTD-LDTFHFSELST-------------GETNSLIKKFTFRNVK-ITDESLFQVMKLLNQISGLLELEFSRN 287 (353)
T ss_dssp TEEEEEEESCB-CTTCCCC-------------------CCCCCCEEEEESCB-CCHHHHHHHHHHHHTCTTCCEEECCSS
T ss_pred cccEEECCCCc-ccccccccccc-------------ccccchhhcccccccc-ccCcchhhhHHHHhcccCCCEEECCCC
Confidence 66666666554 21111100000 1122334444443321 1110 001123456899999999999
Q ss_pred cCCCCCCcCC-CCCCCcCeEEeccCcch
Q 001998 909 RKLKSLPDQL-LQSSTLEKLRIIRAPIL 935 (984)
Q Consensus 909 ~~l~~lp~~~-~~l~~L~~L~i~~c~~l 935 (984)
. +..+|..+ ..+++|++|++++||..
T Consensus 288 ~-l~~i~~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 288 Q-LKSVPDGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp C-CCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred C-CCccCHHHHhcCCCCCEEEeeCCCcc
Confidence 5 77899875 68999999999999853
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.76 E-value=2.1e-18 Score=187.57 Aligned_cols=92 Identities=22% Similarity=0.206 Sum_probs=58.0
Q ss_pred cCCCCccccCcccccccCccceEEecCCCccccchh-hccCCcccEEecccccccccc---cccccCCCCCCeEEeccCC
Q 001998 597 DGGENTVHDIPREIEKLIHLRSLRLAGLKIEELPET-CCKLFNLQTLDINECYRLKRL---PQGVGSLVNLRHLVVSLNG 672 (984)
Q Consensus 597 ~l~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~l---P~~i~~L~~L~~L~l~~~~ 672 (984)
+++++.+..+|..+. .+|++|+|++|.++.+|.. +.++++|++|++++|. +..+ |..+..+++|++|++++|
T Consensus 13 ~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n- 88 (306)
T 2z66_A 13 RCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNG-LSFKGCCSQSDFGTTSLKYLDLSFN- 88 (306)
T ss_dssp ECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCEEEEEEHHHHSCSCCCEEECCSC-
T ss_pred EcCCCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCc-cCcccCcccccccccccCEEECCCC-
Confidence 555566666665443 5677777777777777664 4677777777777765 4433 455566777777777766
Q ss_pred CcccCCccCCCCCCCCcCCc
Q 001998 673 DLDYLPKGVERLTSLRTLRE 692 (984)
Q Consensus 673 ~l~~~p~~i~~l~~L~~L~~ 692 (984)
.+..+|..+..+++|+.|++
T Consensus 89 ~i~~l~~~~~~l~~L~~L~l 108 (306)
T 2z66_A 89 GVITMSSNFLGLEQLEHLDF 108 (306)
T ss_dssp SEEEEEEEEETCTTCCEEEC
T ss_pred ccccChhhcCCCCCCCEEEC
Confidence 44555555555666665544
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.75 E-value=1.6e-18 Score=188.60 Aligned_cols=240 Identities=21% Similarity=0.118 Sum_probs=172.2
Q ss_pred EEEEecCcccccccccCCCceeEEeccCCCcchhhhHHhhhccccccee-cCCCCccccC---cccccccCccceEEecC
Q 001998 548 SILVLDKVASFPVSIFNAKKLRSLLIHSPLEVLSPVLKGLFDHLTYGED-DGGENTVHDI---PREIEKLIHLRSLRLAG 623 (984)
Q Consensus 548 l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lrv-~l~~~~i~~l---p~~i~~L~~Lr~L~L~~ 623 (984)
+......+..+|..+. ++|+.|++.++. +.......|.+++.|+. ++++|.+..+ |..+..+++|++|+|++
T Consensus 12 l~c~~~~l~~ip~~~~--~~l~~L~L~~n~--l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 12 IRCNSKGLTSVPTGIP--SSATRLELESNK--LQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp EECCSSCCSSCCSCCC--TTCCEEECCSSC--CCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred EEcCCCCcccCCCCCC--CCCCEEECCCCc--cCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 3334444555555443 578888888876 33444455778888888 8888887654 56677788888888888
Q ss_pred CCccccchhhccCCcccEEecccccccccccc--cccCCCCCCeEEeccCCCcccCCccCCCCCCCCcCCceEecCCCCc
Q 001998 624 LKIEELPETCCKLFNLQTLDINECYRLKRLPQ--GVGSLVNLRHLVVSLNGDLDYLPKGVERLTSLRTLREFVVSSTGGK 701 (984)
Q Consensus 624 ~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~--~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~ 701 (984)
|.+..+|..+.++++|++|++++|. +..+|. .+..+++|++|++++|......|..+..+++|+.|++..+....
T Consensus 88 n~i~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-- 164 (306)
T 2z66_A 88 NGVITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE-- 164 (306)
T ss_dssp CSEEEEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG--
T ss_pred CccccChhhcCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc--
Confidence 8888888888888888888888887 666663 67888888888888885444445557777888877654322110
Q ss_pred ccccccccccccccccCCCeeEEcCCCCCCChhhhhHhcccCCCCCCeEEEEEcCCcccccCcCchhhccHHHHhhcCCC
Q 001998 702 YCTKACKVEGLRQLNHLRGTLRIRGLGNVTDVEEAEKADLEKKKNIVGLELRFDKEEAATEGINEENEINHQAISEALRP 781 (984)
Q Consensus 702 ~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 781 (984)
. .....+..+++|+.|++++|..... .+..+..
T Consensus 165 -------------------~--------------~~~~~~~~l~~L~~L~Ls~n~l~~~--------------~~~~~~~ 197 (306)
T 2z66_A 165 -------------------N--------------FLPDIFTELRNLTFLDLSQCQLEQL--------------SPTAFNS 197 (306)
T ss_dssp -------------------G--------------EECSCCTTCTTCCEEECTTSCCCEE--------------CTTTTTT
T ss_pred -------------------c--------------cchhHHhhCcCCCEEECCCCCcCCc--------------CHHHhcC
Confidence 0 0011244566788888877765432 2455777
Q ss_pred CCCCCeEEEeecCCCCCCCchhhcCCCCcEEEEeCcCCCCcCCC-CCCCC-Ccceeeecccc
Q 001998 782 PPDLEALEIMHYKGQTAFPSWIVSLNKLKKLKLSSCCKCEIMPP-LGALP-SLEILQIQRME 841 (984)
Q Consensus 782 ~~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~l~~-l~~Lp-~L~~L~L~~~~ 841 (984)
+++|++|++++|.+.+..+..+..+++|+.|+|++|......|. +..+| +|++|++++|+
T Consensus 198 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 198 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp CTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred CCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 89999999999998883344678899999999999987775554 78885 99999999987
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.75 E-value=4.6e-18 Score=195.66 Aligned_cols=239 Identities=18% Similarity=0.178 Sum_probs=182.9
Q ss_pred eEEEEEecCcccccccccCCCceeEEeccCCCcchhhhHHhhhccccccee-cCCCCccccCc-ccccccCccceEEecC
Q 001998 546 RHSILVLDKVASFPVSIFNAKKLRSLLIHSPLEVLSPVLKGLFDHLTYGED-DGGENTVHDIP-REIEKLIHLRSLRLAG 623 (984)
Q Consensus 546 r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lrv-~l~~~~i~~lp-~~i~~L~~Lr~L~L~~ 623 (984)
+.+......+..+|..+. ++++.|++.+|. +....+..|.+++.|+. ++++|.+..++ ..+.++.+|++|+|++
T Consensus 57 ~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~--i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 57 SKVVCTRRGLSEVPQGIP--SNTRYLNLMENN--IQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp CEEECCSSCCSSCCSCCC--TTCSEEECCSSC--CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred cEEEECCCCcCccCCCCC--CCccEEECcCCc--CceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 344444445555665543 689999999886 44444566888999999 99999988765 6788899999999999
Q ss_pred CCccccchh-hccCCcccEEecccccccccccc-cccCCCCCCeEEeccCCCcccCCcc-CCCCCCCCcCCceEecCCCC
Q 001998 624 LKIEELPET-CCKLFNLQTLDINECYRLKRLPQ-GVGSLVNLRHLVVSLNGDLDYLPKG-VERLTSLRTLREFVVSSTGG 700 (984)
Q Consensus 624 ~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lP~-~i~~L~~L~~L~l~~~~~l~~~p~~-i~~l~~L~~L~~~~~~~~~~ 700 (984)
|.++.+|.. +.++++|++|+|++|. +..+|. .+.++++|++|++++|..+..+|.. +..+++|+.|++..+....
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~- 210 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD- 210 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-
T ss_pred CcCCccChhhhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-
Confidence 999988764 7889999999999988 777764 6788999999999987778777754 7788888888765332211
Q ss_pred cccccccccccccccccCCCeeEEcCCCCCCChhhhhHhcccCCCCCCeEEEEEcCCcccccCcCchhhccHHHHhhcCC
Q 001998 701 KYCTKACKVEGLRQLNHLRGTLRIRGLGNVTDVEEAEKADLEKKKNIVGLELRFDKEEAATEGINEENEINHQAISEALR 780 (984)
Q Consensus 701 ~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 780 (984)
+ ..+..+++|+.|+|++|.+... .+..+.
T Consensus 211 -----------~--------------------------~~~~~l~~L~~L~Ls~N~l~~~--------------~~~~~~ 239 (452)
T 3zyi_A 211 -----------M--------------------------PNLTPLVGLEELEMSGNHFPEI--------------RPGSFH 239 (452)
T ss_dssp -----------C--------------------------CCCTTCTTCCEEECTTSCCSEE--------------CGGGGT
T ss_pred -----------c--------------------------ccccccccccEEECcCCcCccc--------------Cccccc
Confidence 0 0134566788888887766433 245677
Q ss_pred CCCCCCeEEEeecCCCCCCCchhhcCCCCcEEEEeCcCCCCcCCC-CCCCCCcceeeecccc
Q 001998 781 PPPDLEALEIMHYKGQTAFPSWIVSLNKLKKLKLSSCCKCEIMPP-LGALPSLEILQIQRME 841 (984)
Q Consensus 781 ~~~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~l~~-l~~Lp~L~~L~L~~~~ 841 (984)
.+++|++|++++|.+....|..+..+++|+.|+|++|......+. +..+++|+.|+|++|+
T Consensus 240 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 240 GLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred CccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 889999999999998886677888999999999999976654444 7889999999999886
No 57
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.75 E-value=5.3e-18 Score=194.44 Aligned_cols=239 Identities=19% Similarity=0.215 Sum_probs=182.3
Q ss_pred eEEEEEecCcccccccccCCCceeEEeccCCCcchhhhHHhhhccccccee-cCCCCccccCc-ccccccCccceEEecC
Q 001998 546 RHSILVLDKVASFPVSIFNAKKLRSLLIHSPLEVLSPVLKGLFDHLTYGED-DGGENTVHDIP-REIEKLIHLRSLRLAG 623 (984)
Q Consensus 546 r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lrv-~l~~~~i~~lp-~~i~~L~~Lr~L~L~~ 623 (984)
+.+......+..+|..+. ++++.|++.+|. +....+..|.+++.|+. ++++|.+..++ ..+.++++|++|+|++
T Consensus 46 ~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~--i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 46 SKVICVRKNLREVPDGIS--TNTRLLNLHENQ--IQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp CEEECCSCCCSSCCSCCC--TTCSEEECCSCC--CCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CEEEeCCCCcCcCCCCCC--CCCcEEEccCCc--CCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 344444455666666554 688999998887 44444566888899999 99999888775 6788899999999999
Q ss_pred CCccccch-hhccCCcccEEecccccccccccc-cccCCCCCCeEEeccCCCcccCCc-cCCCCCCCCcCCceEecCCCC
Q 001998 624 LKIEELPE-TCCKLFNLQTLDINECYRLKRLPQ-GVGSLVNLRHLVVSLNGDLDYLPK-GVERLTSLRTLREFVVSSTGG 700 (984)
Q Consensus 624 ~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lP~-~i~~L~~L~~L~l~~~~~l~~~p~-~i~~l~~L~~L~~~~~~~~~~ 700 (984)
|.++.+|. .+.++++|++|+|++|. +..+|. .+.++++|++|++++|..+..+|. .+.++++|+.|++..+....
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~- 199 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE- 199 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-
T ss_pred CcCCeeCHhHhhccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-
Confidence 99998876 58889999999999988 667664 678899999999998777777765 47788888888765332211
Q ss_pred cccccccccccccccccCCCeeEEcCCCCCCChhhhhHhcccCCCCCCeEEEEEcCCcccccCcCchhhccHHHHhhcCC
Q 001998 701 KYCTKACKVEGLRQLNHLRGTLRIRGLGNVTDVEEAEKADLEKKKNIVGLELRFDKEEAATEGINEENEINHQAISEALR 780 (984)
Q Consensus 701 ~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 780 (984)
++ .+..+++|+.|+|+.|..... .+..+.
T Consensus 200 -----------~~--------------------------~~~~l~~L~~L~Ls~N~l~~~--------------~~~~~~ 228 (440)
T 3zyj_A 200 -----------IP--------------------------NLTPLIKLDELDLSGNHLSAI--------------RPGSFQ 228 (440)
T ss_dssp -----------CC--------------------------CCTTCSSCCEEECTTSCCCEE--------------CTTTTT
T ss_pred -----------cc--------------------------ccCCCcccCEEECCCCccCcc--------------Chhhhc
Confidence 10 134556788888887765432 245677
Q ss_pred CCCCCCeEEEeecCCCCCCCchhhcCCCCcEEEEeCcCCCCcCCC-CCCCCCcceeeecccc
Q 001998 781 PPPDLEALEIMHYKGQTAFPSWIVSLNKLKKLKLSSCCKCEIMPP-LGALPSLEILQIQRME 841 (984)
Q Consensus 781 ~~~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~l~~-l~~Lp~L~~L~L~~~~ 841 (984)
.+++|++|++++|.+....|..+..+++|+.|+|++|......+. +..+++|+.|+|++|+
T Consensus 229 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 229 GLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred cCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 889999999999998885577788999999999999976654444 7889999999999887
No 58
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.75 E-value=1.3e-17 Score=196.49 Aligned_cols=256 Identities=19% Similarity=0.145 Sum_probs=139.0
Q ss_pred ceeEEEEEecCcccccccccCCCceeEEeccCCCcchhhhHHhhhccccccee-cCCCCccccCcccccccCccceEEec
Q 001998 544 KLRHSILVLDKVASFPVSIFNAKKLRSLLIHSPLEVLSPVLKGLFDHLTYGED-DGGENTVHDIPREIEKLIHLRSLRLA 622 (984)
Q Consensus 544 ~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lrv-~l~~~~i~~lp~~i~~L~~Lr~L~L~ 622 (984)
.++.+.+..+.+..+|..+. ++|++|++.+|. +.. ++. .++.|++ ++++|.+..+|. .+++|++|+|+
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~--l~~-lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNN--LTS-LPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC--TTCSEEEECSCC--CSC-CCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEEC
T ss_pred CCcEEEecCCCcCccChhhC--CCCcEEEecCCC--CCC-CCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECc
Confidence 35566666666666665544 567777776665 211 111 3455555 566666555554 45566666666
Q ss_pred CCCccccchhhccCCcccEEecccccccccccccccCCCCCCeEEeccCCCcccCCccCCCCCCCCcCCceEecCCCCcc
Q 001998 623 GLKIEELPETCCKLFNLQTLDINECYRLKRLPQGVGSLVNLRHLVVSLNGDLDYLPKGVERLTSLRTLREFVVSSTGGKY 702 (984)
Q Consensus 623 ~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~ 702 (984)
+|.++.+|. .+.+|++|++++|. ++.+|.. +++|++|++++| .+..+|.. +++
T Consensus 110 ~N~l~~l~~---~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N-~l~~l~~~---~~~---------------- 162 (622)
T 3g06_A 110 SNPLTHLPA---LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDN-QLASLPAL---PSE---------------- 162 (622)
T ss_dssp SCCCCCCCC---CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSS-CCSCCCCC---CTT----------------
T ss_pred CCcCCCCCC---CCCCcCEEECCCCC-CCcCCCC---CCCCCEEECcCC-cCCCcCCc---cCC----------------
Confidence 666665555 34556666666655 5555543 355666666555 33334322 122
Q ss_pred cccccccccccccccCCCeeEEcCCCCCCChhhhhHhcccCCCCCCeEEEEEcCCcccccCcCchhhccHHHHhhcCCCC
Q 001998 703 CTKACKVEGLRQLNHLRGTLRIRGLGNVTDVEEAEKADLEKKKNIVGLELRFDKEEAATEGINEENEINHQAISEALRPP 782 (984)
Q Consensus 703 ~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 782 (984)
|+.|+++.|.+... + ..+
T Consensus 163 --------------------------------------------L~~L~L~~N~l~~l---------------~---~~~ 180 (622)
T 3g06_A 163 --------------------------------------------LCKLWAYNNQLTSL---------------P---MLP 180 (622)
T ss_dssp --------------------------------------------CCEEECCSSCCSCC---------------C---CCC
T ss_pred --------------------------------------------CCEEECCCCCCCCC---------------c---ccC
Confidence 33333333322111 1 123
Q ss_pred CCCCeEEEeecCCCCCCCchhhcCCCCcEEEEeCcCCCCcCCCCCCCCCcceeeeccccCceEecceecCccCCCCCCCC
Q 001998 783 PDLEALEIMHYKGQTAFPSWIVSLNKLKKLKLSSCCKCEIMPPLGALPSLEILQIQRMESVKRVGVEFLGIESFNDYAPS 862 (984)
Q Consensus 783 ~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~l~~l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~~ 862 (984)
++|+.|++++|.+.+ +|.. +++|+.|++++|... .+|. .+++|+.|++++|. +..++
T Consensus 181 ~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~--~~~~L~~L~Ls~N~-L~~lp--------------- 237 (622)
T 3g06_A 181 SGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPA--LPSGLKELIVSGNR-LTSLP--------------- 237 (622)
T ss_dssp TTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCC--CCTTCCEEECCSSC-CSCCC---------------
T ss_pred CCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCC--CCCCCCEEEccCCc-cCcCC---------------
Confidence 456666666665554 5542 356666666665433 2332 23566666666553 22221
Q ss_pred CCccCcccccccccccccCCCCcccccCCCCcccCCcccEEeeecCcCCCCCCcCCCCCCCcCeEEeccCcch
Q 001998 863 SSLSLTAFPKLKELTLFHLDGCEEWDFGKEDVIIMPQLCYLDIRFCRKLKSLPDQLLQSSTLEKLRIIRAPIL 935 (984)
Q Consensus 863 ~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~i~~c~~l 935 (984)
..+++|+.|.++++ .+..+ .. .+++|+.|++++|. +..+|..+..+++|+.|++++|+.-
T Consensus 238 -----~~l~~L~~L~Ls~N-~L~~l--p~----~~~~L~~L~Ls~N~-L~~lp~~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 238 -----VLPSELKELMVSGN-RLTSL--PM----LPSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp -----CCCTTCCEEECCSS-CCSCC--CC----CCTTCCEEECCSSC-CCSCCGGGGGSCTTCEEECCSCCCC
T ss_pred -----CCCCcCcEEECCCC-CCCcC--Cc----ccccCcEEeCCCCC-CCcCCHHHhhccccCEEEecCCCCC
Confidence 13455666665553 22211 11 36788888888884 6688888888888888888888753
No 59
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.74 E-value=5.5e-18 Score=188.31 Aligned_cols=263 Identities=14% Similarity=0.087 Sum_probs=182.7
Q ss_pred EecCcccccccccCCCceeEEeccCCCcchhhhHHhhhccccccee-cCCCCccccCc-ccccccCccceEEecCCCccc
Q 001998 551 VLDKVASFPVSIFNAKKLRSLLIHSPLEVLSPVLKGLFDHLTYGED-DGGENTVHDIP-REIEKLIHLRSLRLAGLKIEE 628 (984)
Q Consensus 551 ~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lrv-~l~~~~i~~lp-~~i~~L~~Lr~L~L~~~~i~~ 628 (984)
..+.+..+|..+. ++|++|++.++. +....+..|.+++.|+. ++++|.+..++ ..++++++|++|+|++|.++.
T Consensus 39 ~~~~l~~iP~~~~--~~L~~L~l~~n~--i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 114 (353)
T 2z80_A 39 SSGSLNSIPSGLT--EAVKSLDLSNNR--ITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSN 114 (353)
T ss_dssp CSTTCSSCCTTCC--TTCCEEECTTSC--CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSS
T ss_pred CCCCccccccccc--ccCcEEECCCCc--CcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCc
Confidence 3445555565544 478888888876 44444446788888888 88888887764 568888889999998888888
Q ss_pred cchh-hccCCcccEEecccccccccccc--cccCCCCCCeEEeccCCCcccC-CccCCCCCCCCcCCceEecCCCCcccc
Q 001998 629 LPET-CCKLFNLQTLDINECYRLKRLPQ--GVGSLVNLRHLVVSLNGDLDYL-PKGVERLTSLRTLREFVVSSTGGKYCT 704 (984)
Q Consensus 629 lp~~-i~~L~~L~~L~L~~~~~l~~lP~--~i~~L~~L~~L~l~~~~~l~~~-p~~i~~l~~L~~L~~~~~~~~~~~~~~ 704 (984)
+|.. ++++++|++|++++|. +..+|. .+.++++|++|++++|..+..+ |..++++++|+.|++..+....
T Consensus 115 ~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~----- 188 (353)
T 2z80_A 115 LSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS----- 188 (353)
T ss_dssp CCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE-----
T ss_pred CCHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc-----
Confidence 8876 7888889999998887 777776 6788888999988888555555 3567888888888887665432
Q ss_pred cccccccccccccCCCeeEEcCCCCCCChhhhhHhcccCCCCCCeEEEEEcCCcccccCcCchhhccHHHHhhcCCCCCC
Q 001998 705 KACKVEGLRQLNHLRGTLRIRGLGNVTDVEEAEKADLEKKKNIVGLELRFDKEEAATEGINEENEINHQAISEALRPPPD 784 (984)
Q Consensus 705 ~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 784 (984)
.....+..+.+|+ .|.+.+.. +.... ...+..+++|+.|+++.|....... ...........
T Consensus 189 --~~~~~l~~l~~L~-~L~l~~n~-l~~~~---~~~~~~~~~L~~L~L~~n~l~~~~~-----------~~l~~~~~~~~ 250 (353)
T 2z80_A 189 --YEPKSLKSIQNVS-HLILHMKQ-HILLL---EIFVDVTSSVECLELRDTDLDTFHF-----------SELSTGETNSL 250 (353)
T ss_dssp --ECTTTTTTCSEEE-EEEEECSC-STTHH---HHHHHHTTTEEEEEEESCBCTTCCC-----------C------CCCC
T ss_pred --cCHHHHhccccCC-eecCCCCc-cccch---hhhhhhcccccEEECCCCccccccc-----------cccccccccch
Confidence 1112233334444 55555432 22222 2233457899999999887643210 00112234567
Q ss_pred CCeEEEeecCCCC----CCCchhhcCCCCcEEEEeCcCCCCcCCC-CCCCCCcceeeecccc
Q 001998 785 LEALEIMHYKGQT----AFPSWIVSLNKLKKLKLSSCCKCEIMPP-LGALPSLEILQIQRME 841 (984)
Q Consensus 785 L~~L~L~~~~~~~----~lp~~l~~l~~L~~L~L~~~~~~~~l~~-l~~Lp~L~~L~L~~~~ 841 (984)
++.++++++.+.. .+|.++..+++|+.|+|++|......+. ++.+++|++|++++|+
T Consensus 251 l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 251 IKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp CCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred hhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCC
Confidence 8888888887654 2678888999999999999977643333 6899999999999986
No 60
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.74 E-value=2.9e-17 Score=188.97 Aligned_cols=93 Identities=24% Similarity=0.325 Sum_probs=62.2
Q ss_pred cCCCCccccCcccccccCccceEEecCCCcccc-chhhccCCcccEEeccccccccccc-ccccCCCCCCeEEeccCCCc
Q 001998 597 DGGENTVHDIPREIEKLIHLRSLRLAGLKIEEL-PETCCKLFNLQTLDINECYRLKRLP-QGVGSLVNLRHLVVSLNGDL 674 (984)
Q Consensus 597 ~l~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lP-~~i~~L~~L~~L~l~~~~~l 674 (984)
+.++..+..+|..+. .+|++|+|++|.|+.+ |..+.++++|++|+|++|. +..++ ..+.++++|++|++++| .+
T Consensus 60 ~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n-~l 135 (452)
T 3zyi_A 60 VCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS-IRQIEVGAFNGLASLNTLELFDN-WL 135 (452)
T ss_dssp ECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CC
T ss_pred EECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCc-cCCcChhhccCcccCCEEECCCC-cC
Confidence 555666666776554 5777788887777765 4567777788888887776 55544 56777777888877777 45
Q ss_pred ccCCcc-CCCCCCCCcCCce
Q 001998 675 DYLPKG-VERLTSLRTLREF 693 (984)
Q Consensus 675 ~~~p~~-i~~l~~L~~L~~~ 693 (984)
..+|.. +..+++|+.|++.
T Consensus 136 ~~~~~~~~~~l~~L~~L~L~ 155 (452)
T 3zyi_A 136 TVIPSGAFEYLSKLRELWLR 155 (452)
T ss_dssp SBCCTTTSSSCTTCCEEECC
T ss_pred CccChhhhcccCCCCEEECC
Confidence 555543 5666666666554
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.73 E-value=4.8e-17 Score=186.49 Aligned_cols=93 Identities=20% Similarity=0.269 Sum_probs=59.5
Q ss_pred cCCCCccccCcccccccCccceEEecCCCccccc-hhhccCCcccEEeccccccccccc-ccccCCCCCCeEEeccCCCc
Q 001998 597 DGGENTVHDIPREIEKLIHLRSLRLAGLKIEELP-ETCCKLFNLQTLDINECYRLKRLP-QGVGSLVNLRHLVVSLNGDL 674 (984)
Q Consensus 597 ~l~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lP-~~i~~L~~L~~L~l~~~~~l 674 (984)
+.++..+..+|..+. .+|++|+|++|.|+.++ ..+.++++|++|+|++|. +..++ ..+.++++|++|++++| .+
T Consensus 49 ~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~n-~l 124 (440)
T 3zyj_A 49 ICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLELFDN-RL 124 (440)
T ss_dssp ECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSC-CCEECGGGGTTCSSCCEEECCSS-CC
T ss_pred EeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCc-CCccChhhccCCccCCEEECCCC-cC
Confidence 555556666666554 56777777777777654 466777777777777776 54444 45677777777777776 44
Q ss_pred ccCCc-cCCCCCCCCcCCce
Q 001998 675 DYLPK-GVERLTSLRTLREF 693 (984)
Q Consensus 675 ~~~p~-~i~~l~~L~~L~~~ 693 (984)
..+|. .+..+++|+.|++.
T Consensus 125 ~~~~~~~~~~l~~L~~L~L~ 144 (440)
T 3zyj_A 125 TTIPNGAFVYLSKLKELWLR 144 (440)
T ss_dssp SSCCTTTSCSCSSCCEEECC
T ss_pred CeeCHhHhhccccCceeeCC
Confidence 55544 35666666666544
No 62
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.73 E-value=9.5e-17 Score=189.26 Aligned_cols=259 Identities=20% Similarity=0.189 Sum_probs=192.2
Q ss_pred cccee-cCCCCccccCcccccccCccceEEecCCCccccchhhccCCcccEEecccccccccccccccCCCCCCeEEecc
Q 001998 592 TYGED-DGGENTVHDIPREIEKLIHLRSLRLAGLKIEELPETCCKLFNLQTLDINECYRLKRLPQGVGSLVNLRHLVVSL 670 (984)
Q Consensus 592 ~~Lrv-~l~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~ 670 (984)
..+++ +++++.+..+|..+. ++|++|+|++|.|+.+|. .+++|++|+|++|. ++.+|. .+++|++|++++
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~ 110 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQ-LTSLPV---LPPGLLELSIFS 110 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCC-CSCCCC---CCTTCCEEEECS
T ss_pred CCCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCc-CCcCCC---CCCCCCEEECcC
Confidence 34677 889999999998776 799999999999999987 57899999999998 888887 789999999998
Q ss_pred CCCcccCCccCCCCCCCCcCCceEecCCCCcccccccccccccccccCCCeeEEcCCCCCCChhhhhHhcccCCCCCCeE
Q 001998 671 NGDLDYLPKGVERLTSLRTLREFVVSSTGGKYCTKACKVEGLRQLNHLRGTLRIRGLGNVTDVEEAEKADLEKKKNIVGL 750 (984)
Q Consensus 671 ~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L 750 (984)
| .+..+|. .+++|+.|++..+.... + + ...++|+.|
T Consensus 111 N-~l~~l~~---~l~~L~~L~L~~N~l~~----------------------l--------p----------~~l~~L~~L 146 (622)
T 3g06_A 111 N-PLTHLPA---LPSGLCKLWIFGNQLTS----------------------L--------P----------VLPPGLQEL 146 (622)
T ss_dssp C-CCCCCCC---CCTTCCEEECCSSCCSC----------------------C--------C----------CCCTTCCEE
T ss_pred C-cCCCCCC---CCCCcCEEECCCCCCCc----------------------C--------C----------CCCCCCCEE
Confidence 8 5677776 46677777654322110 0 0 012578888
Q ss_pred EEEEcCCcccccCcCchhhccHHHHhhcCCCCCCCCeEEEeecCCCCCCCchhhcCCCCcEEEEeCcCCCCcCCCCCCCC
Q 001998 751 ELRFDKEEAATEGINEENEINHQAISEALRPPPDLEALEIMHYKGQTAFPSWIVSLNKLKKLKLSSCCKCEIMPPLGALP 830 (984)
Q Consensus 751 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~l~~l~~Lp 830 (984)
+++.|..... + ..+++|+.|++++|.+.. +| ..+++|+.|++++|.... +|. .++
T Consensus 147 ~Ls~N~l~~l---------------~---~~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~--~~~ 201 (622)
T 3g06_A 147 SVSDNQLASL---------------P---ALPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPT--LPS 201 (622)
T ss_dssp ECCSSCCSCC---------------C---CCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC--CCT
T ss_pred ECcCCcCCCc---------------C---CccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCC--ccc
Confidence 8888765322 1 135789999999999888 88 457999999999997654 444 358
Q ss_pred CcceeeeccccCceEecceecCccCCCCCCCCCCccCcccccccccccccCCCCcccccCCCCcccCCcccEEeeecCcC
Q 001998 831 SLEILQIQRMESVKRVGVEFLGIESFNDYAPSSSLSLTAFPKLKELTLFHLDGCEEWDFGKEDVIIMPQLCYLDIRFCRK 910 (984)
Q Consensus 831 ~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~ 910 (984)
+|+.|++++|. +..++ ..+++|+.|.++++ .+..+. ..+++|+.|++++|.
T Consensus 202 ~L~~L~L~~N~-l~~l~--------------------~~~~~L~~L~Ls~N-~L~~lp------~~l~~L~~L~Ls~N~- 252 (622)
T 3g06_A 202 ELYKLWAYNNR-LTSLP--------------------ALPSGLKELIVSGN-RLTSLP------VLPSELKELMVSGNR- 252 (622)
T ss_dssp TCCEEECCSSC-CSSCC--------------------CCCTTCCEEECCSS-CCSCCC------CCCTTCCEEECCSSC-
T ss_pred hhhEEECcCCc-ccccC--------------------CCCCCCCEEEccCC-ccCcCC------CCCCcCcEEECCCCC-
Confidence 99999999875 33222 23578999988765 333321 257999999999994
Q ss_pred CCCCCcCCCCCCCcCeEEeccCcchHHhhccCCCCCccccccccceeecCceeeee
Q 001998 911 LKSLPDQLLQSSTLEKLRIIRAPILRERFKKDTGEDWSKISHIRDIQIDHEYVQGF 966 (984)
Q Consensus 911 l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~i~~i~~l~~~~~~~~~~ 966 (984)
+..+|. .+++|+.|++++|..- .....+..+.++..+.+.+|.+.+.
T Consensus 253 L~~lp~---~~~~L~~L~Ls~N~L~------~lp~~l~~l~~L~~L~L~~N~l~~~ 299 (622)
T 3g06_A 253 LTSLPM---LPSGLLSLSVYRNQLT------RLPESLIHLSSETTVNLEGNPLSER 299 (622)
T ss_dssp CSCCCC---CCTTCCEEECCSSCCC------SCCGGGGGSCTTCEEECCSCCCCHH
T ss_pred CCcCCc---ccccCcEEeCCCCCCC------cCCHHHhhccccCEEEecCCCCCCc
Confidence 888987 5789999999999642 1223455667777888888877653
No 63
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.71 E-value=4.3e-20 Score=213.85 Aligned_cols=358 Identities=15% Similarity=0.074 Sum_probs=226.1
Q ss_pred cceeEEEEEecCccccc--ccccCCCceeEEeccCCCcchh--hhHHhhhccccccee-cCCCCccccC-ccccc-ccC-
Q 001998 543 DKLRHSILVLDKVASFP--VSIFNAKKLRSLLIHSPLEVLS--PVLKGLFDHLTYGED-DGGENTVHDI-PREIE-KLI- 614 (984)
Q Consensus 543 ~~~r~l~l~~~~~~~~~--~~~~~~~~Lr~L~l~~~~~~~~--~~~~~~~~~l~~Lrv-~l~~~~i~~l-p~~i~-~L~- 614 (984)
.+++++.+..+.+...+ ..+..+++|++|++.+|..... ..++..+..++.|+. ++++|.+... +..+. .+.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 45778888777765322 2256788899999998873211 134566778888999 9999887652 33333 344
Q ss_pred ---ccceEEecCCCcc-----ccchhhccCCcccEEeccccccccc-ccccc-----cCCCCCCeEEeccCCCcc----c
Q 001998 615 ---HLRSLRLAGLKIE-----ELPETCCKLFNLQTLDINECYRLKR-LPQGV-----GSLVNLRHLVVSLNGDLD----Y 676 (984)
Q Consensus 615 ---~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~~l~~-lP~~i-----~~L~~L~~L~l~~~~~l~----~ 676 (984)
+|++|+|++|.++ .+|..+.++++|++|++++|. +.. -+..+ ...++|++|++++|.... .
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 161 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence 6999999999887 568888899999999999987 432 22222 235679999998884322 2
Q ss_pred CCccCCCCCCCCcCCceEecCCCCccccccccccccc-----ccccCCCeeEEcCCCCCCChhhhhHhcccCCCCCCeEE
Q 001998 677 LPKGVERLTSLRTLREFVVSSTGGKYCTKACKVEGLR-----QLNHLRGTLRIRGLGNVTDVEEAEKADLEKKKNIVGLE 751 (984)
Q Consensus 677 ~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~-----~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~ 751 (984)
++..+..+++|+.|++..+.... .....+. .+.+|+ .|.+.++.-...........+..+++|+.|+
T Consensus 162 l~~~l~~~~~L~~L~L~~n~i~~-------~~~~~l~~~l~~~~~~L~-~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~ 233 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNNDINE-------AGVRVLCQGLKDSPCQLE-ALKLESCGVTSDNCRDLCGIVASKASLRELA 233 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHH-------HHHHHHHHHHHHSCCCCC-EEECTTSCCBTTHHHHHHHHHHHCTTCCEEE
T ss_pred HHHHHhhCCCCCEEECcCCCcch-------HHHHHHHHHHhcCCCCce-EEEccCCCCcHHHHHHHHHHHHhCCCccEEe
Confidence 34456677888888876554321 1111111 122444 6666554221111122334466789999999
Q ss_pred EEEcCCcccccCcCchhhccHHHHhh-cCCCCCCCCeEEEeecCCCCC----CCchhhcCCCCcEEEEeCcCCCCc----
Q 001998 752 LRFDKEEAATEGINEENEINHQAISE-ALRPPPDLEALEIMHYKGQTA----FPSWIVSLNKLKKLKLSSCCKCEI---- 822 (984)
Q Consensus 752 L~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~L~~L~L~~~~~~~~----lp~~l~~l~~L~~L~L~~~~~~~~---- 822 (984)
+++|..... ....+.. ....+++|++|++++|.+... +|..+..+++|++|++++|.....
T Consensus 234 Ls~n~l~~~----------~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~ 303 (461)
T 1z7x_W 234 LGSNKLGDV----------GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 303 (461)
T ss_dssp CCSSBCHHH----------HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHH
T ss_pred ccCCcCChH----------HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHH
Confidence 998865321 1122222 234578999999999977652 466677899999999999965321
Q ss_pred CCC--CCCCCCcceeeeccccCceEecceecCccCCCCCCCCCCccCcccccccccccccCCCCcccccC--CCCcc-cC
Q 001998 823 MPP--LGALPSLEILQIQRMESVKRVGVEFLGIESFNDYAPSSSLSLTAFPKLKELTLFHLDGCEEWDFG--KEDVI-IM 897 (984)
Q Consensus 823 l~~--l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~f~~L~~L~l~~l~~l~~~~~~--~~~~~-~l 897 (984)
+.. ....++|++|++++|. +...+..... ..+..+++|+.|.++++ .+...... ...+. ..
T Consensus 304 l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~------------~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~ 369 (461)
T 1z7x_W 304 LCETLLEPGCQLESLWVKSCS-FTAACCSHFS------------SVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPG 369 (461)
T ss_dssp HHHHHTSTTCCCCEEECTTSC-CBGGGHHHHH------------HHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTT
T ss_pred HHHHhccCCccceeeEcCCCC-CchHHHHHHH------------HHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCC
Confidence 111 1234799999999886 3221111000 00234678888888765 23221110 00011 26
Q ss_pred CcccEEeeecCcCCC-----CCCcCCCCCCCcCeEEeccCcc
Q 001998 898 PQLCYLDIRFCRKLK-----SLPDQLLQSSTLEKLRIIRAPI 934 (984)
Q Consensus 898 ~~L~~L~l~~c~~l~-----~lp~~~~~l~~L~~L~i~~c~~ 934 (984)
++|++|++++|. +. .+|..+..+++|++|++++|+.
T Consensus 370 ~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~N~i 410 (461)
T 1z7x_W 370 SVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSNNCL 410 (461)
T ss_dssp CCCCEEECTTSC-CCHHHHHHHHHHHHHCCCCCEEECCSSSC
T ss_pred CceEEEECCCCC-CChhhHHHHHHHHHhCCCccEEECCCCCC
Confidence 899999999996 55 5777777889999999999975
No 64
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.69 E-value=2.6e-18 Score=205.66 Aligned_cols=62 Identities=16% Similarity=0.123 Sum_probs=35.4
Q ss_pred ccccccccccccCCCCcccccCCCCcccCCcccEEeeecCcCCCC--CCcCCCCCCCcCeEEeccCc
Q 001998 869 AFPKLKELTLFHLDGCEEWDFGKEDVIIMPQLCYLDIRFCRKLKS--LPDQLLQSSTLEKLRIIRAP 933 (984)
Q Consensus 869 ~f~~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~--lp~~~~~l~~L~~L~i~~c~ 933 (984)
.+++|+.|.+.++. +....+. ..+..+++|++|+|++|+ +.. ++.....+++|+.|++++|+
T Consensus 461 ~~~~L~~L~L~~n~-l~~~~~~-~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 461 YSPNVRWMLLGYVG-ESDEGLM-EFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp SCTTCCEEEECSCC-SSHHHHH-HHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred hCccceEeeccCCC-CCHHHHH-HHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence 35667777776542 2221110 012356778888888876 332 33334456778888888877
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.69 E-value=1.9e-18 Score=188.63 Aligned_cols=262 Identities=15% Similarity=0.120 Sum_probs=141.6
Q ss_pred ceeEEeccCCCcchhhhHHhhhccccccee-cCCCCccccCc-ccccccCccceEEecCCCccccchhhccCCcccEEec
Q 001998 567 KLRSLLIHSPLEVLSPVLKGLFDHLTYGED-DGGENTVHDIP-REIEKLIHLRSLRLAGLKIEELPETCCKLFNLQTLDI 644 (984)
Q Consensus 567 ~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lrv-~l~~~~i~~lp-~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L 644 (984)
.+..+.+..+. +...+...+..++.|+. ++++|.+..++ ..++++++|++|+|++|.++.+++ +..+++|++|++
T Consensus 11 ~l~i~~ls~~~--l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~L 87 (317)
T 3o53_A 11 RYKIEKVTDSS--LKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDL 87 (317)
T ss_dssp EEEEESCCTTT--HHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEEC
T ss_pred ceeEeeccccc--hhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEEC
Confidence 44555555544 44445555666667777 77777776654 567777777777777777766554 677777777777
Q ss_pred ccccccccccccccCCCCCCeEEeccCCCcccCCccCCCCCCCCcCCceEecCCCCcccccccccccccccccCCCeeEE
Q 001998 645 NECYRLKRLPQGVGSLVNLRHLVVSLNGDLDYLPKGVERLTSLRTLREFVVSSTGGKYCTKACKVEGLRQLNHLRGTLRI 724 (984)
Q Consensus 645 ~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i 724 (984)
++|. ++.+|. +++|++|++++| .+..++.. .+++|+.|
T Consensus 88 s~n~-l~~l~~----~~~L~~L~l~~n-~l~~~~~~--~~~~L~~L---------------------------------- 125 (317)
T 3o53_A 88 NNNY-VQELLV----GPSIETLHAANN-NISRVSCS--RGQGKKNI---------------------------------- 125 (317)
T ss_dssp CSSE-EEEEEE----CTTCCEEECCSS-CCSEEEEC--CCSSCEEE----------------------------------
T ss_pred cCCc-cccccC----CCCcCEEECCCC-ccCCcCcc--ccCCCCEE----------------------------------
Confidence 7776 655553 367777777766 33333221 13333333
Q ss_pred cCCCCCCChhhhhHhcccCCCCCCeEEEEEcCCcccccCcCchhhccHHHHhhcCCCCCCCCeEEEeecCCCCCCCchh-
Q 001998 725 RGLGNVTDVEEAEKADLEKKKNIVGLELRFDKEEAATEGINEENEINHQAISEALRPPPDLEALEIMHYKGQTAFPSWI- 803 (984)
Q Consensus 725 ~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~lp~~l- 803 (984)
+++.|..... ....+..+++|++|++++|.+....|..+
T Consensus 126 --------------------------~l~~N~l~~~--------------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 165 (317)
T 3o53_A 126 --------------------------YLANNKITML--------------RDLDEGCRSRVQYLDLKLNEIDTVNFAELA 165 (317)
T ss_dssp --------------------------ECCSSCCCSG--------------GGBCTGGGSSEEEEECTTSCCCEEEGGGGG
T ss_pred --------------------------ECCCCCCCCc--------------cchhhhccCCCCEEECCCCCCCcccHHHHh
Confidence 3333322111 11123334566666666666555223333
Q ss_pred hcCCCCcEEEEeCcCCCCcCCCCCCCCCcceeeeccccCceEecceecCccCCCCCCCCCCccCcccccccccccccCCC
Q 001998 804 VSLNKLKKLKLSSCCKCEIMPPLGALPSLEILQIQRMESVKRVGVEFLGIESFNDYAPSSSLSLTAFPKLKELTLFHLDG 883 (984)
Q Consensus 804 ~~l~~L~~L~L~~~~~~~~l~~l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~f~~L~~L~l~~l~~ 883 (984)
..+++|+.|+|++|.... ++....+++|++|++++|. +..++.. +..+++|+.|.+.++ .
T Consensus 166 ~~l~~L~~L~L~~N~l~~-~~~~~~l~~L~~L~Ls~N~-l~~l~~~-----------------~~~l~~L~~L~L~~N-~ 225 (317)
T 3o53_A 166 ASSDTLEHLNLQYNFIYD-VKGQVVFAKLKTLDLSSNK-LAFMGPE-----------------FQSAAGVTWISLRNN-K 225 (317)
T ss_dssp GGTTTCCEEECTTSCCCE-EECCCCCTTCCEEECCSSC-CCEECGG-----------------GGGGTTCSEEECTTS-C
T ss_pred hccCcCCEEECCCCcCcc-cccccccccCCEEECCCCc-CCcchhh-----------------hcccCcccEEECcCC-c
Confidence 256666666666664433 2444446666666666654 3333321 123455555555443 1
Q ss_pred CcccccCCCCcccCCcccEEeeecCcCC-CCCCcCCCCCCCcCeEEeccCcchH
Q 001998 884 CEEWDFGKEDVIIMPQLCYLDIRFCRKL-KSLPDQLLQSSTLEKLRIIRAPILR 936 (984)
Q Consensus 884 l~~~~~~~~~~~~l~~L~~L~l~~c~~l-~~lp~~~~~l~~L~~L~i~~c~~l~ 936 (984)
+.. + +..+..+++|+.|++++|+.. ..+|..+..+++|+.|++.+|+.+.
T Consensus 226 l~~--l-~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~ 276 (317)
T 3o53_A 226 LVL--I-EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLT 276 (317)
T ss_dssp CCE--E-CTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred ccc--h-hhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhcc
Confidence 221 1 222445666666666666533 2445555556666666666555443
No 66
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.68 E-value=5.4e-16 Score=166.55 Aligned_cols=216 Identities=21% Similarity=0.175 Sum_probs=134.8
Q ss_pred cCCCCccccCcccccccCccceEEecCCCccccch-hhccCCcccEEecccccccccc-cccccCCCCCCeEEeccCCCc
Q 001998 597 DGGENTVHDIPREIEKLIHLRSLRLAGLKIEELPE-TCCKLFNLQTLDINECYRLKRL-PQGVGSLVNLRHLVVSLNGDL 674 (984)
Q Consensus 597 ~l~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~l-P~~i~~L~~L~~L~l~~~~~l 674 (984)
+++++.+..+|..+ ..+|++|+|++|.++.+|. .+.++++|++|++++|. +..+ |..+..+++|++|++++|..+
T Consensus 17 ~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~l 93 (285)
T 1ozn_A 17 SCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNAQL 93 (285)
T ss_dssp ECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSCTTC
T ss_pred EcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCc-cceeCHhhcCCccCCCEEeCCCCCCc
Confidence 67777788888644 4688999999998887774 68888899999998887 5555 677888888999988888534
Q ss_pred ccC-CccCCCCCCCCcCCceEecCCCCcccccccccccccccccCCCeeEEcCCCCCCChhhhhHhcccCCCCCCeEEEE
Q 001998 675 DYL-PKGVERLTSLRTLREFVVSSTGGKYCTKACKVEGLRQLNHLRGTLRIRGLGNVTDVEEAEKADLEKKKNIVGLELR 753 (984)
Q Consensus 675 ~~~-p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~ 753 (984)
..+ |..+..+++|+.|++..
T Consensus 94 ~~~~~~~~~~l~~L~~L~l~~----------------------------------------------------------- 114 (285)
T 1ozn_A 94 RSVDPATFHGLGRLHTLHLDR----------------------------------------------------------- 114 (285)
T ss_dssp CCCCTTTTTTCTTCCEEECTT-----------------------------------------------------------
T ss_pred cccCHHHhcCCcCCCEEECCC-----------------------------------------------------------
Confidence 444 33344444444443321
Q ss_pred EcCCcccccCcCchhhccHHHHhhcCCCCCCCCeEEEeecCCCCCCCchhhcCCCCcEEEEeCcCCCCcCCC-CCCCCCc
Q 001998 754 FDKEEAATEGINEENEINHQAISEALRPPPDLEALEIMHYKGQTAFPSWIVSLNKLKKLKLSSCCKCEIMPP-LGALPSL 832 (984)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~l~~-l~~Lp~L 832 (984)
|..... .+..+..+++|++|++++|.+....+..+..+++|+.|++++|......+. +..+++|
T Consensus 115 -n~l~~~--------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 179 (285)
T 1ozn_A 115 -CGLQEL--------------GPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSL 179 (285)
T ss_dssp -SCCCCC--------------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred -CcCCEE--------------CHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCcccc
Confidence 111000 012234455666666666666552223355666666666666644433332 5566666
Q ss_pred ceeeeccccCceEecceecCccCCCCCCCCCCccCcccccccccccccCCCCcccccCCCCcccCCcccEEeeecCcCCC
Q 001998 833 EILQIQRMESVKRVGVEFLGIESFNDYAPSSSLSLTAFPKLKELTLFHLDGCEEWDFGKEDVIIMPQLCYLDIRFCRKLK 912 (984)
Q Consensus 833 ~~L~L~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~ 912 (984)
+.|++++|. +.. +.+..+..+++|+.|++++|. +.
T Consensus 180 ~~L~l~~n~-l~~-------------------------------------------~~~~~~~~l~~L~~L~l~~n~-l~ 214 (285)
T 1ozn_A 180 DRLLLHQNR-VAH-------------------------------------------VHPHAFRDLGRLMTLYLFANN-LS 214 (285)
T ss_dssp CEEECCSSC-CCE-------------------------------------------ECTTTTTTCTTCCEEECCSSC-CS
T ss_pred CEEECCCCc-ccc-------------------------------------------cCHhHccCcccccEeeCCCCc-CC
Confidence 666665553 111 112234456788888888875 55
Q ss_pred CCCc-CCCCCCCcCeEEeccCcc
Q 001998 913 SLPD-QLLQSSTLEKLRIIRAPI 934 (984)
Q Consensus 913 ~lp~-~~~~l~~L~~L~i~~c~~ 934 (984)
.+|. .+..+++|+.|++++||.
T Consensus 215 ~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 215 ALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp CCCHHHHTTCTTCCEEECCSSCE
T ss_pred cCCHHHcccCcccCEEeccCCCc
Confidence 5553 366778888888888775
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.68 E-value=4.4e-17 Score=177.80 Aligned_cols=217 Identities=15% Similarity=0.072 Sum_probs=165.5
Q ss_pred ccCCCceeEEeccCCCcchhhhHHhhhccccccee-cCCCCccccCcccccccCccceEEecCCCccccchhhccCCccc
Q 001998 562 IFNAKKLRSLLIHSPLEVLSPVLKGLFDHLTYGED-DGGENTVHDIPREIEKLIHLRSLRLAGLKIEELPETCCKLFNLQ 640 (984)
Q Consensus 562 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lrv-~l~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~ 640 (984)
+..+++|+.|++.+|. +....+..|..++.|+. ++++|.+..+++ +..+++|++|+|++|.++.+|. +++|+
T Consensus 30 ~~~~~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~----~~~L~ 102 (317)
T 3o53_A 30 RQSAWNVKELDLSGNP--LSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIE 102 (317)
T ss_dssp HTTGGGCSEEECTTSC--CCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEEE----CTTCC
T ss_pred hccCCCCCEEECcCCc--cCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccccC----CCCcC
Confidence 3467799999999997 44445667899999999 999999988776 9999999999999999998873 48999
Q ss_pred EEecccccccccccccccCCCCCCeEEeccCCCcccC-CccCCCCCCCCcCCceEecCCCCcccccccccccccccccCC
Q 001998 641 TLDINECYRLKRLPQGVGSLVNLRHLVVSLNGDLDYL-PKGVERLTSLRTLREFVVSSTGGKYCTKACKVEGLRQLNHLR 719 (984)
Q Consensus 641 ~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~~-p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~ 719 (984)
+|++++|. +..+|.. .+++|++|++++|. +..+ |..++.+++|+.|++..+....
T Consensus 103 ~L~l~~n~-l~~~~~~--~~~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~-------------------- 158 (317)
T 3o53_A 103 TLHAANNN-ISRVSCS--RGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEIDT-------------------- 158 (317)
T ss_dssp EEECCSSC-CSEEEEC--CCSSCEEEECCSSC-CCSGGGBCTGGGSSEEEEECTTSCCCE--------------------
T ss_pred EEECCCCc-cCCcCcc--ccCCCCEEECCCCC-CCCccchhhhccCCCCEEECCCCCCCc--------------------
Confidence 99999998 7777653 48899999999994 4544 4467788888888765432221
Q ss_pred CeeEEcCCCCCCChhhhhHhcccCCCCCCeEEEEEcCCcccccCcCchhhccHHHHhhcCCCCCCCCeEEEeecCCCCCC
Q 001998 720 GTLRIRGLGNVTDVEEAEKADLEKKKNIVGLELRFDKEEAATEGINEENEINHQAISEALRPPPDLEALEIMHYKGQTAF 799 (984)
Q Consensus 720 ~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~l 799 (984)
+.. ......+++|+.|++++|..... .....+++|++|++++|.+.. +
T Consensus 159 --~~~-------------~~~~~~l~~L~~L~L~~N~l~~~----------------~~~~~l~~L~~L~Ls~N~l~~-l 206 (317)
T 3o53_A 159 --VNF-------------AELAASSDTLEHLNLQYNFIYDV----------------KGQVVFAKLKTLDLSSNKLAF-M 206 (317)
T ss_dssp --EEG-------------GGGGGGTTTCCEEECTTSCCCEE----------------ECCCCCTTCCEEECCSSCCCE-E
T ss_pred --ccH-------------HHHhhccCcCCEEECCCCcCccc----------------ccccccccCCEEECCCCcCCc-c
Confidence 100 01112456788888887765432 223347889999999998887 7
Q ss_pred CchhhcCCCCcEEEEeCcCCCCcCCCCCCCCCcceeeecccc
Q 001998 800 PSWIVSLNKLKKLKLSSCCKCEIMPPLGALPSLEILQIQRME 841 (984)
Q Consensus 800 p~~l~~l~~L~~L~L~~~~~~~~l~~l~~Lp~L~~L~L~~~~ 841 (984)
|..+..+++|+.|+|++|......+.+..+++|+.|++++|.
T Consensus 207 ~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 207 GPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNG 248 (317)
T ss_dssp CGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCC
T ss_pred hhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCC
Confidence 878888999999999998766544448888999999998876
No 68
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.67 E-value=6.7e-17 Score=173.66 Aligned_cols=63 Identities=19% Similarity=0.221 Sum_probs=43.6
Q ss_pred CCCCCCCCeEEEeecCCCCCCCchhhcCCCCcEEEEeCcCCCCcCCC-CCCCCCcceeeecccc
Q 001998 779 LRPPPDLEALEIMHYKGQTAFPSWIVSLNKLKKLKLSSCCKCEIMPP-LGALPSLEILQIQRME 841 (984)
Q Consensus 779 l~~~~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~l~~-l~~Lp~L~~L~L~~~~ 841 (984)
+..+++|++|++++|.+.+..|.++..+++|+.|++++|......+. +..+++|+.|++++|+
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 173 FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred hcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCC
Confidence 45566777777777777664467777777777777777755543333 6777777777777765
No 69
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.67 E-value=7.3e-18 Score=201.75 Aligned_cols=101 Identities=12% Similarity=0.073 Sum_probs=46.3
Q ss_pred eeEEeccCCCcchhhhHHhhhccccccee-cCCCCcccc-----CcccccccCccceEEecCCCcc-----ccchhhccC
Q 001998 568 LRSLLIHSPLEVLSPVLKGLFDHLTYGED-DGGENTVHD-----IPREIEKLIHLRSLRLAGLKIE-----ELPETCCKL 636 (984)
Q Consensus 568 Lr~L~l~~~~~~~~~~~~~~~~~l~~Lrv-~l~~~~i~~-----lp~~i~~L~~Lr~L~L~~~~i~-----~lp~~i~~L 636 (984)
|++|.+.++.......+..+..+++.|+. ++++|.+.. ++..+..+++|++|++++|.++ .++..+.++
T Consensus 140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~ 219 (592)
T 3ogk_B 140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC 219 (592)
T ss_dssp CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHC
T ss_pred CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhC
Confidence 55555554432112223333344555555 555554322 2223334555555555555543 333344445
Q ss_pred CcccEEecccccccccccccccCCCCCCeEEec
Q 001998 637 FNLQTLDINECYRLKRLPQGVGSLVNLRHLVVS 669 (984)
Q Consensus 637 ~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~ 669 (984)
++|++|++++|. +..+|..+.++++|++|+++
T Consensus 220 ~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~ 251 (592)
T 3ogk_B 220 RSLVSVKVGDFE-ILELVGFFKAAANLEEFCGG 251 (592)
T ss_dssp TTCCEEECSSCB-GGGGHHHHHHCTTCCEEEEC
T ss_pred CCCcEEeccCcc-HHHHHHHHhhhhHHHhhccc
Confidence 555555555544 44455545555555555554
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.67 E-value=3.4e-17 Score=178.29 Aligned_cols=105 Identities=21% Similarity=0.226 Sum_probs=70.4
Q ss_pred CCCCCCCeEEEeecCCCCCCC---ch-hhcCCCCcEEEEeCcCCCCcC--CCCCCCCCcceeeeccccCceEecceecCc
Q 001998 780 RPPPDLEALEIMHYKGQTAFP---SW-IVSLNKLKKLKLSSCCKCEIM--PPLGALPSLEILQIQRMESVKRVGVEFLGI 853 (984)
Q Consensus 780 ~~~~~L~~L~L~~~~~~~~lp---~~-l~~l~~L~~L~L~~~~~~~~l--~~l~~Lp~L~~L~L~~~~~l~~~~~~~~~~ 853 (984)
..+++|++|++++|.+.. +| .. +..+++|+.|++++|...... +.+..+++|++|++++|. ++.++
T Consensus 198 ~~l~~L~~L~L~~N~l~~-~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ip------ 269 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMET-PSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG-LKQVP------ 269 (312)
T ss_dssp TSCTTCCEEECTTSCCCC-HHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC-CSSCC------
T ss_pred ccCCCCCEEECCCCcCcc-hHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc-cChhh------
Confidence 567788888888888764 33 22 236788888888888766644 336667888888887765 21111
Q ss_pred cCCCCCCCCCCccCcccccccccccccCCCCcccccCCCCcccCCcccEEeeecCcCCCCCCcCCCCCCCcCeEEeccCc
Q 001998 854 ESFNDYAPSSSLSLTAFPKLKELTLFHLDGCEEWDFGKEDVIIMPQLCYLDIRFCRKLKSLPDQLLQSSTLEKLRIIRAP 933 (984)
Q Consensus 854 ~~~~~l~~~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~i~~c~ 933 (984)
..+ .++|++|++++|. +..+|. +..+++|++|++++|+
T Consensus 270 --------------------------------------~~~--~~~L~~L~Ls~N~-l~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 270 --------------------------------------KGL--PAKLSVLDLSYNR-LDRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp --------------------------------------SSC--CSEEEEEECCSSC-CCSCCC-TTTSCEEEEEECTTCT
T ss_pred --------------------------------------hhc--cCCceEEECCCCC-CCCChh-HhhCCCCCEEeccCCC
Confidence 111 1677777777774 666665 6677788888888776
Q ss_pred c
Q 001998 934 I 934 (984)
Q Consensus 934 ~ 934 (984)
.
T Consensus 308 l 308 (312)
T 1wwl_A 308 F 308 (312)
T ss_dssp T
T ss_pred C
Confidence 4
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.67 E-value=6.4e-17 Score=187.05 Aligned_cols=129 Identities=12% Similarity=0.054 Sum_probs=66.1
Q ss_pred CCCCCCCCeEEEeecCCCCCCCchhh-cCCCCcEEEEeCcCCCCcCCCCCCCCCcceeeeccccCceEecceecCccCCC
Q 001998 779 LRPPPDLEALEIMHYKGQTAFPSWIV-SLNKLKKLKLSSCCKCEIMPPLGALPSLEILQIQRMESVKRVGVEFLGIESFN 857 (984)
Q Consensus 779 l~~~~~L~~L~L~~~~~~~~lp~~l~-~l~~L~~L~L~~~~~~~~l~~l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~~~ 857 (984)
+..+++|++|++++|.+.+..|..+. .+++|+.|+|++|.... +|....+++|++|+|++|. +..++..
T Consensus 140 ~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~-~~~~~~l~~L~~L~Ls~N~-l~~~~~~-------- 209 (487)
T 3oja_A 140 EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-VKGQVVFAKLKTLDLSSNK-LAFMGPE-------- 209 (487)
T ss_dssp GGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE-EECCCCCTTCCEEECCSSC-CCEECGG--------
T ss_pred hcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc-ccccccCCCCCEEECCCCC-CCCCCHh--------
Confidence 33456677777777766654455554 56777777777775443 3444557777777776664 3333221
Q ss_pred CCCCCCCccCcccccccccccccCCCCcccccCCCCcccCCcccEEeeecCcCC-CCCCcCCCCCCCcCeEEec
Q 001998 858 DYAPSSSLSLTAFPKLKELTLFHLDGCEEWDFGKEDVIIMPQLCYLDIRFCRKL-KSLPDQLLQSSTLEKLRII 930 (984)
Q Consensus 858 ~l~~~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l-~~lp~~~~~l~~L~~L~i~ 930 (984)
+..+++|+.|.+.++ .+.. .+..+..+++|+.|++++|+.. ..+|..+..++.|+.+++.
T Consensus 210 ---------~~~l~~L~~L~Ls~N-~l~~---lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 210 ---------FQSAAGVTWISLRNN-KLVL---IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp ---------GGGGTTCSEEECTTS-CCCE---ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred ---------HcCCCCccEEEecCC-cCcc---cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 123444444444432 1111 1222334555556666555533 2344444444555554443
No 72
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.66 E-value=1.4e-19 Score=209.40 Aligned_cols=369 Identities=16% Similarity=0.103 Sum_probs=223.7
Q ss_pred CceeEEeccCCCcchhhhHHhhhccccccee-cCCCCccc-----cCcccccccCccceEEecCCCcccc-chhh-ccCC
Q 001998 566 KKLRSLLIHSPLEVLSPVLKGLFDHLTYGED-DGGENTVH-----DIPREIEKLIHLRSLRLAGLKIEEL-PETC-CKLF 637 (984)
Q Consensus 566 ~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lrv-~l~~~~i~-----~lp~~i~~L~~Lr~L~L~~~~i~~l-p~~i-~~L~ 637 (984)
++|++|++.++..... ....++..++.|+. ++++|.+. .++..+..+++|++|+|++|.+... +..+ ..+.
T Consensus 3 ~~l~~L~Ls~~~l~~~-~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDA-RWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp EEEEEEEEESCCCCHH-HHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred ccceehhhhhcccCch-hHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 5789999998873222 24555888999999 99999977 4678889999999999999998742 3333 3455
Q ss_pred ----cccEEecccccccc-----cccccccCCCCCCeEEeccCCCcccCCcc-----CCCCCCCCcCCceEecCCCCccc
Q 001998 638 ----NLQTLDINECYRLK-----RLPQGVGSLVNLRHLVVSLNGDLDYLPKG-----VERLTSLRTLREFVVSSTGGKYC 703 (984)
Q Consensus 638 ----~L~~L~L~~~~~l~-----~lP~~i~~L~~L~~L~l~~~~~l~~~p~~-----i~~l~~L~~L~~~~~~~~~~~~~ 703 (984)
+|++|++++|. +. .+|..+..+++|++|++++|......+.. ....++|+.|++..+.......
T Consensus 82 ~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~- 159 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC- 159 (461)
T ss_dssp STTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH-
T ss_pred hCCCceeEEEccCCC-CCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHH-
Confidence 79999999998 55 57888999999999999998532211221 2235678888876554332100
Q ss_pred ccccccccccccccCCCeeEEcCCCCCCChhh-hhHhcc-cCCCCCCeEEEEEcCCcccccCcCchhhccHHHHhhcCCC
Q 001998 704 TKACKVEGLRQLNHLRGTLRIRGLGNVTDVEE-AEKADL-EKKKNIVGLELRFDKEEAATEGINEENEINHQAISEALRP 781 (984)
Q Consensus 704 ~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~-~~~~~l-~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 781 (984)
......+..+++|+ .|.+.+.. +..... .....+ ...++|+.|++++|..... ....++..+..
T Consensus 160 --~~l~~~l~~~~~L~-~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~----------~~~~l~~~l~~ 225 (461)
T 1z7x_W 160 --EPLASVLRAKPDFK-ELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCGVTSD----------NCRDLCGIVAS 225 (461)
T ss_dssp --HHHHHHHHHCTTCC-EEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTT----------HHHHHHHHHHH
T ss_pred --HHHHHHHhhCCCCC-EEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCCCcHH----------HHHHHHHHHHh
Confidence 00112233344555 56655432 211111 111111 2356888888888765432 12234555566
Q ss_pred CCCCCeEEEeecCCCCCC-----CchhhcCCCCcEEEEeCcCCCCc----CCC-CCCCCCcceeeeccccCceEecceec
Q 001998 782 PPDLEALEIMHYKGQTAF-----PSWIVSLNKLKKLKLSSCCKCEI----MPP-LGALPSLEILQIQRMESVKRVGVEFL 851 (984)
Q Consensus 782 ~~~L~~L~L~~~~~~~~l-----p~~l~~l~~L~~L~L~~~~~~~~----l~~-l~~Lp~L~~L~L~~~~~l~~~~~~~~ 851 (984)
+++|++|++++|.+.... +.....+++|++|++++|..... ++. +..+++|++|++++|. +...+....
T Consensus 226 ~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l 304 (461)
T 1z7x_W 226 KASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE-LGDEGARLL 304 (461)
T ss_dssp CTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC-CHHHHHHHH
T ss_pred CCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCC-CchHHHHHH
Confidence 788999999888754411 22223578899999998855431 333 5668889999998875 322211111
Q ss_pred CccCCCCCCCCCCccCcccccccccccccCCCCcccc--cCCCCcccCCcccEEeeecCcCCCCC-C----cCCC-CCCC
Q 001998 852 GIESFNDYAPSSSLSLTAFPKLKELTLFHLDGCEEWD--FGKEDVIIMPQLCYLDIRFCRKLKSL-P----DQLL-QSST 923 (984)
Q Consensus 852 ~~~~~~~l~~~~~~~~~~f~~L~~L~l~~l~~l~~~~--~~~~~~~~l~~L~~L~l~~c~~l~~l-p----~~~~-~l~~ 923 (984)
...- ....++|+.|.+.++. +.... ..+..+..+++|++|++++|. +... + ..+. ..++
T Consensus 305 ~~~l-----------~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~ 371 (461)
T 1z7x_W 305 CETL-----------LEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNNR-LEDAGVRELCQGLGQPGSV 371 (461)
T ss_dssp HHHH-----------TSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSSB-CHHHHHHHHHHHHTSTTCC
T ss_pred HHHh-----------ccCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCCc-cccccHHHHHHHHcCCCCc
Confidence 0000 1123688888888763 22211 112224467999999999995 4432 2 2222 2678
Q ss_pred cCeEEeccCcchHHhhccCCCCCccccccccceeecCceeeee
Q 001998 924 LEKLRIIRAPILRERFKKDTGEDWSKISHIRDIQIDHEYVQGF 966 (984)
Q Consensus 924 L~~L~i~~c~~l~~~~~~~~~~~~~~i~~i~~l~~~~~~~~~~ 966 (984)
|++|++++|..-...+. ..........++..+++.+|.+...
T Consensus 372 L~~L~L~~n~i~~~~~~-~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 372 LRVLWLADCDVSDSSCS-SLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp CCEEECTTSCCCHHHHH-HHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred eEEEECCCCCCChhhHH-HHHHHHHhCCCccEEECCCCCCCHH
Confidence 99999999974321110 0111123345677777877766654
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.66 E-value=1.3e-16 Score=184.55 Aligned_cols=213 Identities=15% Similarity=0.069 Sum_probs=140.7
Q ss_pred CceeEEeccCCCcchhhhHHhhhccccccee-cCCCCccccCcccccccCccceEEecCCCccccchhhccCCcccEEec
Q 001998 566 KKLRSLLIHSPLEVLSPVLKGLFDHLTYGED-DGGENTVHDIPREIEKLIHLRSLRLAGLKIEELPETCCKLFNLQTLDI 644 (984)
Q Consensus 566 ~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lrv-~l~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L 644 (984)
++|++|++.+|. +....+..|..++.|++ ++++|.+..+++ ++.+++|++|+|++|.++.+|.. ++|++|++
T Consensus 34 ~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L~L 106 (487)
T 3oja_A 34 WNVKELDLSGNP--LSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVG----PSIETLHA 106 (487)
T ss_dssp GGCCEEECCSSC--CCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEEC----TTCCEEEC
T ss_pred CCccEEEeeCCc--CCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCCC----CCcCEEEC
Confidence 367777776665 33334445666666666 666666665544 66666777777777766665532 66677777
Q ss_pred ccccccccccccccCCCCCCeEEeccCCCcccCCccCCCCCCCCcCCceEecCCCCcccccccccccccccccCCCeeEE
Q 001998 645 NECYRLKRLPQGVGSLVNLRHLVVSLNGDLDYLPKGVERLTSLRTLREFVVSSTGGKYCTKACKVEGLRQLNHLRGTLRI 724 (984)
Q Consensus 645 ~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i 724 (984)
++|. +..+|.. .+++|++|++++|......|..++.+++|+.|++..+...+
T Consensus 107 ~~N~-l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~------------------------- 158 (487)
T 3oja_A 107 ANNN-ISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT------------------------- 158 (487)
T ss_dssp CSSC-CCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCE-------------------------
T ss_pred cCCc-CCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCC-------------------------
Confidence 7666 5555432 35666777776663333334455666666666544322111
Q ss_pred cCCCCCCChhhhhHhcc-cCCCCCCeEEEEEcCCcccccCcCchhhccHHHHhhcCCCCCCCCeEEEeecCCCCCCCchh
Q 001998 725 RGLGNVTDVEEAEKADL-EKKKNIVGLELRFDKEEAATEGINEENEINHQAISEALRPPPDLEALEIMHYKGQTAFPSWI 803 (984)
Q Consensus 725 ~~~~~~~~~~~~~~~~l-~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~lp~~l 803 (984)
.....+ ..+++|+.|+|++|.+... .....+++|++|+|++|.+.+ +|..+
T Consensus 159 -----------~~~~~l~~~l~~L~~L~Ls~N~l~~~----------------~~~~~l~~L~~L~Ls~N~l~~-~~~~~ 210 (487)
T 3oja_A 159 -----------VNFAELAASSDTLEHLNLQYNFIYDV----------------KGQVVFAKLKTLDLSSNKLAF-MGPEF 210 (487)
T ss_dssp -----------EEGGGGGGGTTTCCEEECTTSCCCEE----------------ECCCCCTTCCEEECCSSCCCE-ECGGG
T ss_pred -----------cChHHHhhhCCcccEEecCCCccccc----------------cccccCCCCCEEECCCCCCCC-CCHhH
Confidence 001112 2467888899888876432 233457899999999999988 88889
Q ss_pred hcCCCCcEEEEeCcCCCCcCCCCCCCCCcceeeecccc
Q 001998 804 VSLNKLKKLKLSSCCKCEIMPPLGALPSLEILQIQRME 841 (984)
Q Consensus 804 ~~l~~L~~L~L~~~~~~~~l~~l~~Lp~L~~L~L~~~~ 841 (984)
..+++|+.|+|++|......+.++.+++|+.|++++|+
T Consensus 211 ~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 211 QSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp GGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCC
T ss_pred cCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCC
Confidence 99999999999999777644458899999999999987
No 74
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.65 E-value=3.7e-17 Score=177.99 Aligned_cols=246 Identities=20% Similarity=0.183 Sum_probs=158.3
Q ss_pred CCCceeEEeccCCCcchhhhHHhhhccccccee-cCCCCcccc--Cccccc-------ccCccceEEecCCCcc-ccchh
Q 001998 564 NAKKLRSLLIHSPLEVLSPVLKGLFDHLTYGED-DGGENTVHD--IPREIE-------KLIHLRSLRLAGLKIE-ELPET 632 (984)
Q Consensus 564 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lrv-~l~~~~i~~--lp~~i~-------~L~~Lr~L~L~~~~i~-~lp~~ 632 (984)
..++|+.|.+.++.. ..+..+... |+. ++++|.+.. +|..+. ++.+|++|+|++|.++ .+|..
T Consensus 41 ~~~~L~~l~l~~n~l---~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE---ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEECTTHHHHCCTT---CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred cCCCceeEeeccccc---ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 345566666666652 212222222 555 666666543 555554 6777777777777776 56666
Q ss_pred h--ccCCcccEEecccccccccccccccCC-----CCCCeEEeccCCCcccCC-ccCCCCCCCCcCCceEecCCCCcccc
Q 001998 633 C--CKLFNLQTLDINECYRLKRLPQGVGSL-----VNLRHLVVSLNGDLDYLP-KGVERLTSLRTLREFVVSSTGGKYCT 704 (984)
Q Consensus 633 i--~~L~~L~~L~L~~~~~l~~lP~~i~~L-----~~L~~L~l~~~~~l~~~p-~~i~~l~~L~~L~~~~~~~~~~~~~~ 704 (984)
+ +.+++|++|++++|. +..+|..+..+ ++|++|++++|. +..+| ..++++++|+.|++..+...+.
T Consensus 115 ~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~---- 188 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQVRVFPALSTLDLSDNPELGE---- 188 (312)
T ss_dssp SSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTCCCCSSCCEEECCSCTTCHH----
T ss_pred HHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHhccCCCCCEEECCCCCcCcc----
Confidence 5 777777777777776 55556666665 777777777773 34443 5677777777777765543210
Q ss_pred cccccccc--cccccCCCeeEEcCCCCCCChhhhhHhcccCCCCCCeEEEEEcCCcccccCcCchhhccHHHHhhcCCCC
Q 001998 705 KACKVEGL--RQLNHLRGTLRIRGLGNVTDVEEAEKADLEKKKNIVGLELRFDKEEAATEGINEENEINHQAISEALRPP 782 (984)
Q Consensus 705 ~~~~l~~L--~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 782 (984)
......+ ..+.+|+ .|.+.+. .+..........+..+++|+.|++++|...... ....+..+
T Consensus 189 -~~~~~~~~~~~l~~L~-~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-------------~~~~~~~l 252 (312)
T 1wwl_A 189 -RGLISALCPLKFPTLQ-VLALRNA-GMETPSGVCSALAAARVQLQGLDLSHNSLRDAA-------------GAPSCDWP 252 (312)
T ss_dssp -HHHHHHSCTTSCTTCC-EEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSC-------------CCSCCCCC
T ss_pred -hHHHHHHHhccCCCCC-EEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCCcCCccc-------------chhhhhhc
Confidence 0001111 3334444 5554443 233333333344567789999999988765421 01334557
Q ss_pred CCCCeEEEeecCCCCCCCchhhcCCCCcEEEEeCcCCCCcCCCCCCCCCcceeeecccc
Q 001998 783 PDLEALEIMHYKGQTAFPSWIVSLNKLKKLKLSSCCKCEIMPPLGALPSLEILQIQRME 841 (984)
Q Consensus 783 ~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~l~~l~~Lp~L~~L~L~~~~ 841 (984)
++|++|++++|.+.. +|.++. ++|++|+|++|..... |.+..+++|++|++++|+
T Consensus 253 ~~L~~L~Ls~N~l~~-ip~~~~--~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 253 SQLNSLNLSFTGLKQ-VPKGLP--AKLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGNP 307 (312)
T ss_dssp TTCCEEECTTSCCSS-CCSSCC--SEEEEEECCSSCCCSC-CCTTTSCEEEEEECTTCT
T ss_pred CCCCEEECCCCccCh-hhhhcc--CCceEEECCCCCCCCC-hhHhhCCCCCEEeccCCC
Confidence 899999999999986 998876 8999999999976554 679999999999999886
No 75
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.65 E-value=1.2e-16 Score=142.52 Aligned_cols=80 Identities=26% Similarity=0.464 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHHhhhhc--cccchHHHHHHHHHHhhhhchhhHHHHHHHH
Q 001998 9 VLEQLISVAAKEATEEVRLVVGVGQQVEKLKRNFRAIQAVLHDAEHR--QVREEGVRLWLDQLKDTSYDMEDVLDEWITA 86 (984)
Q Consensus 9 ~~~~l~~~l~~~~~~~~~~~~~v~~~~~~l~~~l~~i~~~l~~a~~~--~~~~~~~~~wl~~lr~~ayd~eD~ld~~~~~ 86 (984)
+|+.+++||.+++.+|+.++.||++++++|+++|++|++||.+|+.+ +..+++++.|++||||+|||+|||||+|.++
T Consensus 2 ~v~~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~~ 81 (115)
T 3qfl_A 2 AISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLVQ 81 (115)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778999999999999999999999999999999999999999987 5679999999999999999999999999998
Q ss_pred HH
Q 001998 87 RL 88 (984)
Q Consensus 87 ~~ 88 (984)
..
T Consensus 82 ~~ 83 (115)
T 3qfl_A 82 VD 83 (115)
T ss_dssp HH
T ss_pred hc
Confidence 74
No 76
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.64 E-value=2.6e-15 Score=156.54 Aligned_cols=206 Identities=17% Similarity=0.225 Sum_probs=123.7
Q ss_pred cccCcccccccCccceEEecCCCccccch-hhccCCcccEEecccccccccccc-cccCCCCCCeEEeccCCCcccCCc-
Q 001998 603 VHDIPREIEKLIHLRSLRLAGLKIEELPE-TCCKLFNLQTLDINECYRLKRLPQ-GVGSLVNLRHLVVSLNGDLDYLPK- 679 (984)
Q Consensus 603 i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lP~-~i~~L~~L~~L~l~~~~~l~~~p~- 679 (984)
+..+|. +. .+|++|++++|.++.+|. .+.++++|++|++++|..++.+|. .+.++++|++|++++|..+..+|.
T Consensus 23 l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~ 99 (239)
T 2xwt_C 23 IQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD 99 (239)
T ss_dssp CSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred ccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence 666776 43 378888888888888776 677888888888888864666664 577888888888877324444432
Q ss_pred cCCCCCCCCcCCceEecCCCCcccccccccccccccccCCCeeEEcCCCCCCChhhhhHhcccCCCCCCeEEEEEcCCcc
Q 001998 680 GVERLTSLRTLREFVVSSTGGKYCTKACKVEGLRQLNHLRGTLRIRGLGNVTDVEEAEKADLEKKKNIVGLELRFDKEEA 759 (984)
Q Consensus 680 ~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~ 759 (984)
.+..+
T Consensus 100 ~f~~l--------------------------------------------------------------------------- 104 (239)
T 2xwt_C 100 ALKEL--------------------------------------------------------------------------- 104 (239)
T ss_dssp SEECC---------------------------------------------------------------------------
T ss_pred HhCCC---------------------------------------------------------------------------
Confidence 12222
Q ss_pred cccCcCchhhccHHHHhhcCCCCCCCCeEEEeecCCCCCCCchhhcCCCCc---EEEEeCcCCCCcCCC--CCCCCCcc-
Q 001998 760 ATEGINEENEINHQAISEALRPPPDLEALEIMHYKGQTAFPSWIVSLNKLK---KLKLSSCCKCEIMPP--LGALPSLE- 833 (984)
Q Consensus 760 ~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~lp~~l~~l~~L~---~L~L~~~~~~~~l~~--l~~Lp~L~- 833 (984)
++|++|++++|.+.+ +|. +..+++|+ .|++++|.....+|. ++.+++|+
T Consensus 105 -----------------------~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~ 159 (239)
T 2xwt_C 105 -----------------------PLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETL 159 (239)
T ss_dssp -----------------------TTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEE
T ss_pred -----------------------CCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhccee
Confidence 344444444444444 444 44444444 666665522222222 55566666
Q ss_pred eeeeccccCceEecceecCccCCCCCCCCCCccCcccccccccccccCCCCcccccCCCCcccC-CcccEEeeecCcCCC
Q 001998 834 ILQIQRMESVKRVGVEFLGIESFNDYAPSSSLSLTAFPKLKELTLFHLDGCEEWDFGKEDVIIM-PQLCYLDIRFCRKLK 912 (984)
Q Consensus 834 ~L~L~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~l-~~L~~L~l~~c~~l~ 912 (984)
.|++++|. +..++... ... ++|+.|.+.++..+. .+.+..+..+ ++|+.|++++|+ +.
T Consensus 160 ~L~l~~n~-l~~i~~~~----------------~~~-~~L~~L~L~~n~~l~--~i~~~~~~~l~~~L~~L~l~~N~-l~ 218 (239)
T 2xwt_C 160 TLKLYNNG-FTSVQGYA----------------FNG-TKLDAVYLNKNKYLT--VIDKDAFGGVYSGPSLLDVSQTS-VT 218 (239)
T ss_dssp EEECCSCC-CCEECTTT----------------TTT-CEEEEEECTTCTTCC--EECTTTTTTCSBCCSEEECTTCC-CC
T ss_pred EEEcCCCC-CcccCHhh----------------cCC-CCCCEEEcCCCCCcc--cCCHHHhhccccCCcEEECCCCc-cc
Confidence 66665554 33333211 111 455555555443333 2233345567 899999999985 77
Q ss_pred CCCcCCCCCCCcCeEEeccCcc
Q 001998 913 SLPDQLLQSSTLEKLRIIRAPI 934 (984)
Q Consensus 913 ~lp~~~~~l~~L~~L~i~~c~~ 934 (984)
.+|.. .+++|+.|++.+|+.
T Consensus 219 ~l~~~--~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 219 ALPSK--GLEHLKELIARNTWT 238 (239)
T ss_dssp CCCCT--TCTTCSEEECTTC--
T ss_pred cCChh--HhccCceeeccCccC
Confidence 88876 578899999998865
No 77
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.63 E-value=1.2e-15 Score=165.49 Aligned_cols=193 Identities=18% Similarity=0.203 Sum_probs=126.3
Q ss_pred cccccee-cCCCCccccCcccccccCccceEEecCCCccccchhhccCCcccEEecccccccccccccccCCCCCCeEEe
Q 001998 590 HLTYGED-DGGENTVHDIPREIEKLIHLRSLRLAGLKIEELPETCCKLFNLQTLDINECYRLKRLPQGVGSLVNLRHLVV 668 (984)
Q Consensus 590 ~l~~Lrv-~l~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l 668 (984)
.+..|+. +++++.+..+| .+..+++|++|+|++|.+..+|. +.++++|++|++++|. +..+| .+..+++|++|++
T Consensus 39 ~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEEEC
T ss_pred HcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-CCCch-hhcCCCCCCEEEC
Confidence 3445555 55556666555 46667777777777777666665 6667777777777766 56655 3666777777777
Q ss_pred ccCCCcccCCccCCCCCCCCcCCceEecCCCCcccccccccccccccccCCCeeEEcCCCCCCChhhhhHhcccCCCCCC
Q 001998 669 SLNGDLDYLPKGVERLTSLRTLREFVVSSTGGKYCTKACKVEGLRQLNHLRGTLRIRGLGNVTDVEEAEKADLEKKKNIV 748 (984)
Q Consensus 669 ~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~~~~L~ 748 (984)
++| .+..+|. +..+++|+.|++..+.... .. .+..+++|+
T Consensus 115 ~~n-~l~~~~~-l~~l~~L~~L~l~~n~l~~---------------------------------~~-----~l~~l~~L~ 154 (308)
T 1h6u_A 115 TST-QITDVTP-LAGLSNLQVLYLDLNQITN---------------------------------IS-----PLAGLTNLQ 154 (308)
T ss_dssp TTS-CCCCCGG-GTTCTTCCEEECCSSCCCC---------------------------------CG-----GGGGCTTCC
T ss_pred CCC-CCCCchh-hcCCCCCCEEECCCCccCc---------------------------------Cc-----cccCCCCcc
Confidence 666 3444443 5666666666554322111 00 033455667
Q ss_pred eEEEEEcCCcccccCcCchhhccHHHHhhcCCCCCCCCeEEEeecCCCCCCCchhhcCCCCcEEEEeCcCCCCcCCCCCC
Q 001998 749 GLELRFDKEEAATEGINEENEINHQAISEALRPPPDLEALEIMHYKGQTAFPSWIVSLNKLKKLKLSSCCKCEIMPPLGA 828 (984)
Q Consensus 749 ~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~l~~l~~ 828 (984)
.|+++.|..... . .+..+++|++|++++|.+.. +|. +..+++|++|+|++|.... ++.+..
T Consensus 155 ~L~l~~n~l~~~---------------~-~l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~L~~N~l~~-~~~l~~ 215 (308)
T 1h6u_A 155 YLSIGNAQVSDL---------------T-PLANLSKLTTLKADDNKISD-ISP-LASLPNLIEVHLKNNQISD-VSPLAN 215 (308)
T ss_dssp EEECCSSCCCCC---------------G-GGTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECTTSCCCB-CGGGTT
T ss_pred EEEccCCcCCCC---------------h-hhcCCCCCCEEECCCCccCc-Chh-hcCCCCCCEEEccCCccCc-cccccC
Confidence 777766654321 1 15667899999999999877 665 7789999999999996654 445889
Q ss_pred CCCcceeeeccccCceEe
Q 001998 829 LPSLEILQIQRMESVKRV 846 (984)
Q Consensus 829 Lp~L~~L~L~~~~~l~~~ 846 (984)
+++|+.|++++|. +...
T Consensus 216 l~~L~~L~l~~N~-i~~~ 232 (308)
T 1h6u_A 216 TSNLFIVTLTNQT-ITNQ 232 (308)
T ss_dssp CTTCCEEEEEEEE-EECC
T ss_pred CCCCCEEEccCCe-eecC
Confidence 9999999999887 4433
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.62 E-value=6.6e-15 Score=157.88 Aligned_cols=200 Identities=17% Similarity=0.153 Sum_probs=123.1
Q ss_pred ccccCccceEEecCCCccccchhhccCCcccEEecccccccccc-cccccCCCCCCeEEeccCCCcccCCccCCCCCCCC
Q 001998 610 IEKLIHLRSLRLAGLKIEELPETCCKLFNLQTLDINECYRLKRL-PQGVGSLVNLRHLVVSLNGDLDYLPKGVERLTSLR 688 (984)
Q Consensus 610 i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~l-P~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~ 688 (984)
++++.+|++++++++.++.+|..+. ++|++|++++|. +..+ |..+..+++|++|++++| .+..+|.. +.+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENL-LYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSC-CSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-SCCTTCC
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCc-CCccCHHHhhcCCCCCEEECCCC-ccCcccCC-CCCCcCC
Confidence 5567777777777777777776664 577777777776 4444 455777777777777766 33333321 2333333
Q ss_pred cCCceEecCCCCcccccccccccccccccCCCeeEEcCCCCCCChhhhhHhcccCCCCCCeEEEEEcCCcccccCcCchh
Q 001998 689 TLREFVVSSTGGKYCTKACKVEGLRQLNHLRGTLRIRGLGNVTDVEEAEKADLEKKKNIVGLELRFDKEEAATEGINEEN 768 (984)
Q Consensus 689 ~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~ 768 (984)
.|++ ++|....
T Consensus 81 ~L~L------------------------------------------------------------s~N~l~~--------- 91 (290)
T 1p9a_G 81 TLDL------------------------------------------------------------SHNQLQS--------- 91 (290)
T ss_dssp EEEC------------------------------------------------------------CSSCCSS---------
T ss_pred EEEC------------------------------------------------------------CCCcCCc---------
Confidence 3322 2111110
Q ss_pred hccHHHHhhcCCCCCCCCeEEEeecCCCCCCCchhhcCCCCcEEEEeCcCCCCcCCC-CCCCCCcceeeeccccCceEec
Q 001998 769 EINHQAISEALRPPPDLEALEIMHYKGQTAFPSWIVSLNKLKKLKLSSCCKCEIMPP-LGALPSLEILQIQRMESVKRVG 847 (984)
Q Consensus 769 ~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~l~~-l~~Lp~L~~L~L~~~~~l~~~~ 847 (984)
++..+..+++|++|++++|.+....|..+..+++|+.|+|++|......+. +..+++|+.|++++|. +..
T Consensus 92 ------l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~-- 162 (290)
T 1p9a_G 92 ------LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN-LTE-- 162 (290)
T ss_dssp ------CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CSC--
T ss_pred ------CchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc-CCc--
Confidence 111233445667777777776662234566777777777777755543333 5667777777776654 211
Q ss_pred ceecCccCCCCCCCCCCccCcccccccccccccCCCCcccccCCCCcccCCcccEEeeecCcCCCCCCcCCCCCCCcCeE
Q 001998 848 VEFLGIESFNDYAPSSSLSLTAFPKLKELTLFHLDGCEEWDFGKEDVIIMPQLCYLDIRFCRKLKSLPDQLLQSSTLEKL 927 (984)
Q Consensus 848 ~~~~~~~~~~~l~~~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L 927 (984)
+.+..+..+++|+.|++++|. +..+|..+...++|+.|
T Consensus 163 -----------------------------------------l~~~~~~~l~~L~~L~L~~N~-l~~ip~~~~~~~~L~~l 200 (290)
T 1p9a_G 163 -----------------------------------------LPAGLLNGLENLDTLLLQENS-LYTIPKGFFGSHLLPFA 200 (290)
T ss_dssp -----------------------------------------CCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCCCSEE
T ss_pred -----------------------------------------cCHHHhcCcCCCCEEECCCCc-CCccChhhcccccCCeE
Confidence 112223457888999999885 77889888888899999
Q ss_pred EeccCcc
Q 001998 928 RIIRAPI 934 (984)
Q Consensus 928 ~i~~c~~ 934 (984)
++++||.
T Consensus 201 ~L~~Np~ 207 (290)
T 1p9a_G 201 FLHGNPW 207 (290)
T ss_dssp ECCSCCB
T ss_pred EeCCCCc
Confidence 9998875
No 79
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.61 E-value=2.4e-15 Score=163.01 Aligned_cols=91 Identities=22% Similarity=0.284 Sum_probs=71.3
Q ss_pred cCCCCccccCcccccccCccceEEecCCCccccchhhccCCcccEEecccccccccccccccCCCCCCeEEeccCCCccc
Q 001998 597 DGGENTVHDIPREIEKLIHLRSLRLAGLKIEELPETCCKLFNLQTLDINECYRLKRLPQGVGSLVNLRHLVVSLNGDLDY 676 (984)
Q Consensus 597 ~l~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~ 676 (984)
.+..+.+..+. ...++.+|++|++++|.++.+| .+..+++|++|++++|. +..+|. +..+++|++|++++| .+..
T Consensus 25 ~l~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~-i~~~~~-~~~l~~L~~L~L~~n-~l~~ 99 (308)
T 1h6u_A 25 AAGKSNVTDTV-TQADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQ-ITDLAP-LKNLTKITELELSGN-PLKN 99 (308)
T ss_dssp HTTCSSTTSEE-CHHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCCSCCEEECCSC-CCSC
T ss_pred HhCCCCcCcee-cHHHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCc-CCCChh-HccCCCCCEEEccCC-cCCC
Confidence 44444444432 3567999999999999999998 68999999999999997 888888 999999999999998 4555
Q ss_pred CCccCCCCCCCCcCCce
Q 001998 677 LPKGVERLTSLRTLREF 693 (984)
Q Consensus 677 ~p~~i~~l~~L~~L~~~ 693 (984)
+| .+..+++|+.|++.
T Consensus 100 ~~-~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 100 VS-AIAGLQSIKTLDLT 115 (308)
T ss_dssp CG-GGTTCTTCCEEECT
T ss_pred ch-hhcCCCCCCEEECC
Confidence 54 46666666666543
No 80
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.60 E-value=5.5e-15 Score=157.86 Aligned_cols=93 Identities=23% Similarity=0.314 Sum_probs=70.5
Q ss_pred ecCCCCccccCcccccccCccceEEecCCCccccch-hhccCCcccEEecccccccccccc-cccCCCCCCeEEeccCCC
Q 001998 596 DDGGENTVHDIPREIEKLIHLRSLRLAGLKIEELPE-TCCKLFNLQTLDINECYRLKRLPQ-GVGSLVNLRHLVVSLNGD 673 (984)
Q Consensus 596 v~l~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lP~-~i~~L~~L~~L~l~~~~~ 673 (984)
++..+..+..+|..+. .+|++|+|++|.++.+|. .+.++++|++|++++|. +..+|. .+.++++|++|++++|.
T Consensus 12 ~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~- 87 (276)
T 2z62_A 12 YQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNP- 87 (276)
T ss_dssp EECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTCC-
T ss_pred EEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCc-CCccCHHHccCCcCCCEEECCCCc-
Confidence 3556666777887664 579999999999998876 78899999999999987 666654 68889999999999884
Q ss_pred cccCC-ccCCCCCCCCcCCc
Q 001998 674 LDYLP-KGVERLTSLRTLRE 692 (984)
Q Consensus 674 l~~~p-~~i~~l~~L~~L~~ 692 (984)
+..++ ..+.++++|+.|++
T Consensus 88 l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 88 IQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp CCEECTTTTTTCTTCCEEEC
T ss_pred cCccChhhhcCCccccEEEC
Confidence 44443 44666666666654
No 81
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.60 E-value=9.7e-17 Score=177.09 Aligned_cols=196 Identities=15% Similarity=0.095 Sum_probs=117.5
Q ss_pred eeEEeccCCCcchhhhHHhhhccc--cccee-cCCCCccccCcccccccCccceEEecCCCccc--cchhhccCCcccEE
Q 001998 568 LRSLLIHSPLEVLSPVLKGLFDHL--TYGED-DGGENTVHDIPREIEKLIHLRSLRLAGLKIEE--LPETCCKLFNLQTL 642 (984)
Q Consensus 568 Lr~L~l~~~~~~~~~~~~~~~~~l--~~Lrv-~l~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~--lp~~i~~L~~L~~L 642 (984)
++.+++.++... +..+..+ +.++. ++++|.+...+..+.++++|++|+|++|.+.. +|..+.++++|++|
T Consensus 49 ~~~l~l~~~~~~-----~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 49 WQTLDLTGKNLH-----PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp SSEEECTTCBCC-----HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred heeeccccccCC-----HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 445555554311 2224444 56666 77777777766667778888888888888763 77778888888888
Q ss_pred ecccccccccccccccCCCCCCeEEeccCCCccc--CCccCCCCCCCCcCCceEecCCCCcccccccccccccccccCCC
Q 001998 643 DINECYRLKRLPQGVGSLVNLRHLVVSLNGDLDY--LPKGVERLTSLRTLREFVVSSTGGKYCTKACKVEGLRQLNHLRG 720 (984)
Q Consensus 643 ~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~--~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~ 720 (984)
++++|......|..+..+++|++|++++|..+.. +|..+.++++|
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L--------------------------------- 170 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL--------------------------------- 170 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC---------------------------------
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCC---------------------------------
Confidence 8888873335677777888888888887743331 23223333444
Q ss_pred eeEEcCCCCCCChhhhhHhcccCCCCCCeEEEEEc-CCcccccCcCchhhccHHHHhhcCCCCC-CCCeEEEeecC--CC
Q 001998 721 TLRIRGLGNVTDVEEAEKADLEKKKNIVGLELRFD-KEEAATEGINEENEINHQAISEALRPPP-DLEALEIMHYK--GQ 796 (984)
Q Consensus 721 ~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~L~~L~L~~~~--~~ 796 (984)
+.|++++| .... ..+...+..++ +|++|++++|. +.
T Consensus 171 ---------------------------~~L~l~~~~~l~~-------------~~~~~~~~~l~~~L~~L~l~~~~~~~~ 210 (336)
T 2ast_B 171 ---------------------------DELNLSWCFDFTE-------------KHVQVAVAHVSETITQLNLSGYRKNLQ 210 (336)
T ss_dssp ---------------------------CEEECCCCTTCCH-------------HHHHHHHHHSCTTCCEEECCSCGGGSC
T ss_pred ---------------------------CEEcCCCCCCcCh-------------HHHHHHHHhcccCCCEEEeCCCcccCC
Confidence 44444333 2210 11222233345 67777776663 22
Q ss_pred -CCCCchhhcCCCCcEEEEeCcCCCC--cCCCCCCCCCcceeeecccc
Q 001998 797 -TAFPSWIVSLNKLKKLKLSSCCKCE--IMPPLGALPSLEILQIQRME 841 (984)
Q Consensus 797 -~~lp~~l~~l~~L~~L~L~~~~~~~--~l~~l~~Lp~L~~L~L~~~~ 841 (984)
..+|..+..+++|++|++++|.... .++.++.+++|++|++++|.
T Consensus 211 ~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 211 KSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp HHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred HHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence 2245566677777777777776322 33446667777777777765
No 82
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.60 E-value=6.1e-17 Score=193.88 Aligned_cols=148 Identities=20% Similarity=0.137 Sum_probs=102.6
Q ss_pred cceeEEEEEecCcccc-ccccc-CCCceeEEeccCCCcchhhhHHhhhccccccee-cCCCCcccc-----CcccccccC
Q 001998 543 DKLRHSILVLDKVASF-PVSIF-NAKKLRSLLIHSPLEVLSPVLKGLFDHLTYGED-DGGENTVHD-----IPREIEKLI 614 (984)
Q Consensus 543 ~~~r~l~l~~~~~~~~-~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lrv-~l~~~~i~~-----lp~~i~~L~ 614 (984)
..++++.+..+.+... +..+. .+++|++|.+.+|.......++.++.+++.|+. ++++|.+.. ++.....++
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~ 184 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT 184 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence 4678888887765421 22333 578999999998853333335666678899999 999888654 334444778
Q ss_pred ccceEEecCCC--cc--ccchhhccCCcccEEecccccccccccccccCCCCCCeEEeccCCC------cccCCccCCCC
Q 001998 615 HLRSLRLAGLK--IE--ELPETCCKLFNLQTLDINECYRLKRLPQGVGSLVNLRHLVVSLNGD------LDYLPKGVERL 684 (984)
Q Consensus 615 ~Lr~L~L~~~~--i~--~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~------l~~~p~~i~~l 684 (984)
+|++|++++|. +. .++..+.++++|++|++++|..+..+|..+.++++|++|+++.+.. +..++..+.++
T Consensus 185 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~ 264 (594)
T 2p1m_B 185 SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGC 264 (594)
T ss_dssp CCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTC
T ss_pred cCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcC
Confidence 99999999986 32 3444456689999999999976777888888999999998766532 12233345566
Q ss_pred CCCCcC
Q 001998 685 TSLRTL 690 (984)
Q Consensus 685 ~~L~~L 690 (984)
++|+.|
T Consensus 265 ~~L~~L 270 (594)
T 2p1m_B 265 KELRCL 270 (594)
T ss_dssp TTCCEE
T ss_pred CCcccc
Confidence 666665
No 83
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.60 E-value=2e-14 Score=163.29 Aligned_cols=300 Identities=12% Similarity=0.028 Sum_probs=181.5
Q ss_pred cCCcccccHHHHHHHHHHH-hcCCCCCCCCceEEEEE--EecCcchHHHHHHHHhcCcccc---cCCC-eEEEEEecCCC
Q 001998 177 DVSEVRGRDEEMRTLKSML-LCQGSDQQTNTVQIFSM--VGMGGIGKTTLAQLAYNDNDVI---NNFE-IRVWVCVSDPF 249 (984)
Q Consensus 177 ~~~~~~Gr~~~~~~l~~~L-~~~~~~~~~~~~~vi~I--~G~gGiGKTtLa~~v~~~~~~~---~~F~-~~~wv~~s~~~ 249 (984)
.+..++||+++++++..++ .....+. ....+.+.| +|++|+||||||+.+++..... ..|. .++|+.+....
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~~~-~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLSGA-GLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAP 98 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHTSS-CBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCC
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhcCC-CCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCC
Confidence 3468999999999999988 4321000 012345556 9999999999999999842211 1223 36788877778
Q ss_pred CHHHHHHHHHHHhcCCCCC-cccHHHHHHHHHHHhC--CCceEEEEEcCCCCCc------CChhhHHHhhcCC---C--C
Q 001998 250 DEFSVAKAIIEELEGSATD-LHELNSLLRRIGANIA--GQKFFMVLDNLWTDDY------RKWEPFRNCLMNG---L--R 315 (984)
Q Consensus 250 ~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l~--~kr~LlVlDdvw~~~~------~~~~~l~~~l~~~---~--~ 315 (984)
+...++..++.+++..... ..+...+...+.+.+. +++++|||||+|.-.. +.+..+...+... + .
T Consensus 99 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 178 (412)
T 1w5s_A 99 NLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVN 178 (412)
T ss_dssp SHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCC
T ss_pred CHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCc
Confidence 8999999999998654221 2234555566666654 7899999999976321 2222232333221 2 3
Q ss_pred CcEEEEEccchHHHhhcC--------C-CCeEeCCCCChHhHHHHHHHHh---cCCCCCCCchhHHHHHHHHHHhcC---
Q 001998 316 GSKILLTTRKETVARMME--------S-TDIVYVQGLSEPECWSLFRRFA---FSGRTPLECDQLEEIGRGIVRKCK--- 380 (984)
Q Consensus 316 gs~iiiTtr~~~v~~~~~--------~-~~~~~l~~L~~~~~~~lf~~~~---~~~~~~~~~~~l~~~~~~i~~~~~--- 380 (984)
...||+||+...+...+. . ...+.+.+++.++++++|..++ +... ... .+..+.|++.++
T Consensus 179 ~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~--~~~---~~~~~~i~~~~~~~~ 253 (412)
T 1w5s_A 179 RIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDT--VWE---PRHLELISDVYGEDK 253 (412)
T ss_dssp BEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTT--SCC---HHHHHHHHHHHCGGG
T ss_pred eEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCC--CCC---hHHHHHHHHHHHHhc
Confidence 455888887655332111 1 2238999999999999997653 3211 111 355667888999
Q ss_pred ---CChHHHHHHHHhh---c--cC---CCHHHHHHHHhhhhhhhhhhcccc-cchhhccccCCChhhhhhhhhcccCC--
Q 001998 381 ---GLPLAAKTIGSLL---Q--FK---RTKEEWQSVLDSEMWQLEEFERGL-SAPLFLSYNDLPFEIKRCFSYCAIFP-- 446 (984)
Q Consensus 381 ---GlPLai~~~~~~l---~--~~---~~~~~w~~~l~~~~~~~~~~~~~~-~~~l~~sy~~L~~~~k~cfl~~~~fp-- 446 (984)
|.|..+..+.... . .. -+.+.+..++... . ...+.-++..||.+.+.++..++.+.
T Consensus 254 ~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~----------~~~~~~~~~l~~l~~~~~~~l~aia~l~~~ 323 (412)
T 1w5s_A 254 GGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSEN----------EAASIQTHELEALSIHELIILRLIAEATLG 323 (412)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC----------------CCSSSSSCHHHHHHHHHHHHHHHT
T ss_pred cCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH----------hccchHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 9997665554321 1 11 1233343333211 1 23455678889999999998888754
Q ss_pred CCCccChHHHHHHHH--H-cCCcCCCCCchHHHhHHHHHHHHhhccccccee
Q 001998 447 KGSSLKKDELVKLWM--A-QGYIVPKGNKEMEVIGLEYFDCLASRSFYQQFV 495 (984)
Q Consensus 447 ~~~~i~~~~li~~Wi--a-eg~i~~~~~~~~e~~~~~~~~~L~~r~l~~~~~ 495 (984)
.+..++...+...+. + +-. . .... .......++++|...+++....
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~-~-~~~~-~~~~~~~~l~~L~~~gli~~~~ 372 (412)
T 1w5s_A 324 GMEWINAGLLRQRYEDASLTMY-N-VKPR-GYTQYHIYLKHLTSLGLVDAKP 372 (412)
T ss_dssp TCSSBCHHHHHHHHHHHHHHHS-C-CCCC-CHHHHHHHHHHHHHTTSEEEEC
T ss_pred CCCCccHHHHHHHHHHHHHhhc-C-CCCC-CHHHHHHHHHHHHhCCCEEeec
Confidence 333566666655442 2 111 0 0111 1234567899999999997653
No 84
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.60 E-value=3.4e-15 Score=159.44 Aligned_cols=124 Identities=26% Similarity=0.226 Sum_probs=74.7
Q ss_pred CceeEEeccCCCcchhhhHHhhhccccccee-cCCCCccccCcc-cccccCccceEEecCCCccccc-hhhccCCcccEE
Q 001998 566 KKLRSLLIHSPLEVLSPVLKGLFDHLTYGED-DGGENTVHDIPR-EIEKLIHLRSLRLAGLKIEELP-ETCCKLFNLQTL 642 (984)
Q Consensus 566 ~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lrv-~l~~~~i~~lp~-~i~~L~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L 642 (984)
++|++|++.++. +....+..|.+++.|+. ++++|.+..++. .+.++++|++|+|++|.++.++ ..+.++++|++|
T Consensus 28 ~~l~~L~ls~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (276)
T 2z62_A 28 FSTKNLDLSFNP--LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105 (276)
T ss_dssp TTCCEEECTTCC--CCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred CCccEEECCCCc--ccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEE
Confidence 457777777765 33323334566666666 666666666543 5666677777777777666554 456666777777
Q ss_pred ecccccccccccc-cccCCCCCCeEEeccCCCccc--CCccCCCCCCCCcCCce
Q 001998 643 DINECYRLKRLPQ-GVGSLVNLRHLVVSLNGDLDY--LPKGVERLTSLRTLREF 693 (984)
Q Consensus 643 ~L~~~~~l~~lP~-~i~~L~~L~~L~l~~~~~l~~--~p~~i~~l~~L~~L~~~ 693 (984)
++++|. +..++. .+.++++|++|++++|. +.. +|..++.+++|+.|++.
T Consensus 106 ~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~~~~l~~L~~L~Ls 157 (276)
T 2z62_A 106 VAVETN-LASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLS 157 (276)
T ss_dssp ECTTSC-CCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECC
T ss_pred ECCCCC-ccccCchhcccCCCCCEEECcCCc-cceecCchhhccCCCCCEEECC
Confidence 777665 444443 46666777777776663 332 35555556666655543
No 85
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.59 E-value=8.3e-15 Score=155.75 Aligned_cols=190 Identities=25% Similarity=0.326 Sum_probs=122.9
Q ss_pred cCCCCccccCcccccccCccceEEecCCCccccch-hhccCCcccEEecccccccccccccc-cCCCCCCeEEeccCCCc
Q 001998 597 DGGENTVHDIPREIEKLIHLRSLRLAGLKIEELPE-TCCKLFNLQTLDINECYRLKRLPQGV-GSLVNLRHLVVSLNGDL 674 (984)
Q Consensus 597 ~l~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lP~~i-~~L~~L~~L~l~~~~~l 674 (984)
+++++.+..+|..+. .+|++|+|++|.++.+|. .+.++++|++|++++|. ++.+|..+ .++++|++|++++| .+
T Consensus 22 ~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n-~l 97 (270)
T 2o6q_A 22 DCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWVTDN-KL 97 (270)
T ss_dssp ECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEECCSS-CC
T ss_pred EccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEECCCC-cC
Confidence 566666666665443 466777777777666654 56667777777777665 55666543 56777777777666 34
Q ss_pred ccCCc-cCCCCCCCCcCCceEecCCCCcccccccccccccccccCCCeeEEcCCCCCCChhhhhHhcccCCCCCCeEEEE
Q 001998 675 DYLPK-GVERLTSLRTLREFVVSSTGGKYCTKACKVEGLRQLNHLRGTLRIRGLGNVTDVEEAEKADLEKKKNIVGLELR 753 (984)
Q Consensus 675 ~~~p~-~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~ 753 (984)
..+|. .+..+++|+.|++..+.... + ....+..+++|+.|+++
T Consensus 98 ~~~~~~~~~~l~~L~~L~l~~n~l~~----------------------~--------------~~~~~~~l~~L~~L~Ls 141 (270)
T 2o6q_A 98 QALPIGVFDQLVNLAELRLDRNQLKS----------------------L--------------PPRVFDSLTKLTYLSLG 141 (270)
T ss_dssp CCCCTTTTTTCSSCCEEECCSSCCCC----------------------C--------------CTTTTTTCTTCCEEECC
T ss_pred CcCCHhHcccccCCCEEECCCCccCe----------------------e--------------CHHHhCcCcCCCEEECC
Confidence 44443 34566666666554322111 0 00113445667777777
Q ss_pred EcCCcccccCcCchhhccHHHHhhcCCCCCCCCeEEEeecCCCCCCCc-hhhcCCCCcEEEEeCcCCCCcCCC-CCCCCC
Q 001998 754 FDKEEAATEGINEENEINHQAISEALRPPPDLEALEIMHYKGQTAFPS-WIVSLNKLKKLKLSSCCKCEIMPP-LGALPS 831 (984)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~lp~-~l~~l~~L~~L~L~~~~~~~~l~~-l~~Lp~ 831 (984)
+|..... ....+..+++|++|++++|.+.. +|. .+..+++|+.|+|++|......+. +..+++
T Consensus 142 ~n~l~~~--------------~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 206 (270)
T 2o6q_A 142 YNELQSL--------------PKGVFDKLTSLKELRLYNNQLKR-VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEK 206 (270)
T ss_dssp SSCCCCC--------------CTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred CCcCCcc--------------CHhHccCCcccceeEecCCcCcE-eChhHhccCCCcCEEECCCCcCCcCCHHHhccccC
Confidence 6654322 12235677899999999998887 554 577899999999999976654443 888999
Q ss_pred cceeeecccc
Q 001998 832 LEILQIQRME 841 (984)
Q Consensus 832 L~~L~L~~~~ 841 (984)
|+.|++++|+
T Consensus 207 L~~L~l~~N~ 216 (270)
T 2o6q_A 207 LKMLQLQENP 216 (270)
T ss_dssp CCEEECCSSC
T ss_pred CCEEEecCCC
Confidence 9999999886
No 86
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.58 E-value=8e-15 Score=157.24 Aligned_cols=63 Identities=21% Similarity=0.215 Sum_probs=49.0
Q ss_pred cCCCCCCCCeEEEeecCCCCCCCch-hhcCCCCcEEEEeCcCCCCcCCCCCCCCCcceeeecccc
Q 001998 778 ALRPPPDLEALEIMHYKGQTAFPSW-IVSLNKLKKLKLSSCCKCEIMPPLGALPSLEILQIQRME 841 (984)
Q Consensus 778 ~l~~~~~L~~L~L~~~~~~~~lp~~-l~~l~~L~~L~L~~~~~~~~l~~l~~Lp~L~~L~L~~~~ 841 (984)
.+..+++|+.|++++|.+.. +|.. +..+++|+.|+|++|......+.+..+++|+.|.+++|+
T Consensus 143 ~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 143 LLTPTPKLEKLSLANNNLTE-LPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp TTTTCTTCCEEECTTSCCSC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred hcccccCCCEEECCCCcCCc-cCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCC
Confidence 34567788899999888877 6654 467899999999998766544447778899999998876
No 87
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.57 E-value=7.7e-14 Score=154.70 Aligned_cols=296 Identities=14% Similarity=0.085 Sum_probs=179.1
Q ss_pred cccCCcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCC-----
Q 001998 175 LIDVSEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPF----- 249 (984)
Q Consensus 175 ~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~----- 249 (984)
...+..|+||+++++.+.+++.. + +++.|+|++|+|||||++.+++. . . .+|+.+....
T Consensus 8 ~~~~~~~~gR~~el~~L~~~l~~--------~-~~v~i~G~~G~GKT~Ll~~~~~~--~----~-~~~~~~~~~~~~~~~ 71 (350)
T 2qen_A 8 KTRREDIFDREEESRKLEESLEN--------Y-PLTLLLGIRRVGKSSLLRAFLNE--R----P-GILIDCRELYAERGH 71 (350)
T ss_dssp CCSGGGSCSCHHHHHHHHHHHHH--------C-SEEEEECCTTSSHHHHHHHHHHH--S----S-EEEEEHHHHHHTTTC
T ss_pred CCChHhcCChHHHHHHHHHHHhc--------C-CeEEEECCCcCCHHHHHHHHHHH--c----C-cEEEEeecccccccC
Confidence 34556899999999999998853 1 58999999999999999999874 2 1 6777765432
Q ss_pred -CHHHHHHHHHHHhcC-----------------C-CCCcccHHHHHHHHHHHhCC-CceEEEEEcCCCCCc-------CC
Q 001998 250 -DEFSVAKAIIEELEG-----------------S-ATDLHELNSLLRRIGANIAG-QKFFMVLDNLWTDDY-------RK 302 (984)
Q Consensus 250 -~~~~~~~~i~~~l~~-----------------~-~~~~~~~~~~~~~l~~~l~~-kr~LlVlDdvw~~~~-------~~ 302 (984)
+...+++.+.+.+.. . .....+..++...+.+.... ++++||+||++.-+. +.
T Consensus 72 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~ 151 (350)
T 2qen_A 72 ITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKEL 151 (350)
T ss_dssp BCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHH
T ss_pred CCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhH
Confidence 566677777665532 0 00123456666666665543 389999999965321 11
Q ss_pred hhhHHHhhcCCCCCcEEEEEccchHH-Hhh----------cCC-CCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHH
Q 001998 303 WEPFRNCLMNGLRGSKILLTTRKETV-ARM----------MES-TDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEE 370 (984)
Q Consensus 303 ~~~l~~~l~~~~~gs~iiiTtr~~~v-~~~----------~~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~ 370 (984)
+..+..... ...+.++|+|++.... ... .+. ...+.+.+|+.+|+.+++.......+.... .+
T Consensus 152 ~~~L~~~~~-~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~----~~ 226 (350)
T 2qen_A 152 LALFAYAYD-SLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVP----EN 226 (350)
T ss_dssp HHHHHHHHH-HCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCC----HH
T ss_pred HHHHHHHHH-hcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCC----HH
Confidence 222322222 2257899999887653 221 111 237899999999999999875422111111 34
Q ss_pred HHHHHHHhcCCChHHHHHHHHhhccCCCHHHHHH-HHhhhhhhhhhhcccccchhhccccCCChhhhhhhhhcccCCCCC
Q 001998 371 IGRGIVRKCKGLPLAAKTIGSLLQFKRTKEEWQS-VLDSEMWQLEEFERGLSAPLFLSYNDLPFEIKRCFSYCAIFPKGS 449 (984)
Q Consensus 371 ~~~~i~~~~~GlPLai~~~~~~l~~~~~~~~w~~-~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl~~~~fp~~~ 449 (984)
.+..|++.++|+|+++..++..+....+...+.. +.+.....+ ...+. .+.+ . ++..+..+..+|. +
T Consensus 227 ~~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~---~l~~-~-~~~~~~~l~~la~---g- 294 (350)
T 2qen_A 227 EIEEAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVAKGLI---MGELE---ELRR-R-SPRYVDILRAIAL---G- 294 (350)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH---HHHHH---HHHH-H-CHHHHHHHHHHHT---T-
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHHHHHHH---HHHHH---HHHh-C-ChhHHHHHHHHHh---C-
Confidence 5678999999999999999876533222222211 111100000 01111 1122 2 6788888888887 2
Q ss_pred ccChHHHHHHHHHcCCcCCCCCchHHHhHHHHHHHHhhcccccceecCCCCceeeEEechHHHHHH
Q 001998 450 SLKKDELVKLWMAQGYIVPKGNKEMEVIGLEYFDCLASRSFYQQFVKDDDNMVIGCTMHDVVHDFA 515 (984)
Q Consensus 450 ~i~~~~li~~Wiaeg~i~~~~~~~~e~~~~~~~~~L~~r~l~~~~~~~~~~~~~~~~~Hdlv~~~~ 515 (984)
..+...+....-+. .- +.+ ......+++.|++.+++.... + .+...|.+++++.
T Consensus 295 ~~~~~~l~~~~~~~-~~----~~~-~~~~~~~l~~L~~~gli~~~~----~--~y~~~~p~~~~~~ 348 (350)
T 2qen_A 295 YNRWSLIRDYLAVK-GT----KIP-EPRLYALLENLKKMNWIVEED----N--TYKIADPVVATVL 348 (350)
T ss_dssp CCSHHHHHHHHHHT-TC----CCC-HHHHHHHHHHHHHTTSEEEET----T--EEEESSHHHHHHH
T ss_pred CCCHHHHHHHHHHH-hC----CCC-HHHHHHHHHHHHhCCCEEecC----C--EEEEecHHHHHHH
Confidence 24555555443221 10 111 244668999999999996541 2 2334577888765
No 88
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.57 E-value=6.1e-14 Score=149.04 Aligned_cols=198 Identities=24% Similarity=0.256 Sum_probs=133.6
Q ss_pred CccceEEecCCCccccchhhccCCcccEEecccccccccccc-cccCCCCCCeEEeccCCCcccCCcc-CCCCCCCCcCC
Q 001998 614 IHLRSLRLAGLKIEELPETCCKLFNLQTLDINECYRLKRLPQ-GVGSLVNLRHLVVSLNGDLDYLPKG-VERLTSLRTLR 691 (984)
Q Consensus 614 ~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~-~i~~L~~L~~L~l~~~~~l~~~p~~-i~~l~~L~~L~ 691 (984)
.++++++++++.++.+|..+. .+|++|++++|. +..+|. .+.++++|++|++++| .+..+|.. +..+++|++|+
T Consensus 16 ~~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNK-LSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLW 91 (270)
T ss_dssp TTTTEEECTTSCCSSCCSCCC--TTCSEEECCSSC-CSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEE
T ss_pred CCCCEEEccCCCCCccCCCCC--CCCCEEECcCCC-CCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEE
Confidence 357899999999999998765 689999999998 777774 6899999999999988 45566544 35566666554
Q ss_pred ceEecCCCCcccccccccccccccccCCCeeEEcCCCCCCChhhhhHhcccCCCCCCeEEEEEcCCcccccCcCchhhcc
Q 001998 692 EFVVSSTGGKYCTKACKVEGLRQLNHLRGTLRIRGLGNVTDVEEAEKADLEKKKNIVGLELRFDKEEAATEGINEENEIN 771 (984)
Q Consensus 692 ~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~ 771 (984)
+..+ .....
T Consensus 92 l~~n------------------------------------------------------------~l~~~----------- 100 (270)
T 2o6q_A 92 VTDN------------------------------------------------------------KLQAL----------- 100 (270)
T ss_dssp CCSS------------------------------------------------------------CCCCC-----------
T ss_pred CCCC------------------------------------------------------------cCCcC-----------
Confidence 4321 11100
Q ss_pred HHHHhhcCCCCCCCCeEEEeecCCCCCCCchhhcCCCCcEEEEeCcCCCCcCCC-CCCCCCcceeeeccccCceEeccee
Q 001998 772 HQAISEALRPPPDLEALEIMHYKGQTAFPSWIVSLNKLKKLKLSSCCKCEIMPP-LGALPSLEILQIQRMESVKRVGVEF 850 (984)
Q Consensus 772 ~~~~~~~l~~~~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~l~~-l~~Lp~L~~L~L~~~~~l~~~~~~~ 850 (984)
....+..+++|++|++++|.+....|..+..+++|++|+|++|......+. ++.+++|+.|++++|. +..+
T Consensus 101 ---~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~---- 172 (270)
T 2o6q_A 101 ---PIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ-LKRV---- 172 (270)
T ss_dssp ---CTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCC----
T ss_pred ---CHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCc-CcEe----
Confidence 012244567788888888887773344567788888888888865544333 6778888888887664 2111
Q ss_pred cCccCCCCCCCCCCccCcccccccccccccCCCCcccccCCCCcccCCcccEEeeecCcCCCCCCcC-CCCCCCcCeEEe
Q 001998 851 LGIESFNDYAPSSSLSLTAFPKLKELTLFHLDGCEEWDFGKEDVIIMPQLCYLDIRFCRKLKSLPDQ-LLQSSTLEKLRI 929 (984)
Q Consensus 851 ~~~~~~~~l~~~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L~i 929 (984)
.+..+..+++|++|++++|. +..+|.. +..+++|+.|++
T Consensus 173 ---------------------------------------~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l 212 (270)
T 2o6q_A 173 ---------------------------------------PEGAFDKLTELKTLKLDNNQ-LKRVPEGAFDSLEKLKMLQL 212 (270)
T ss_dssp ---------------------------------------CTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEEC
T ss_pred ---------------------------------------ChhHhccCCCcCEEECCCCc-CCcCCHHHhccccCCCEEEe
Confidence 11123346777777777774 5566553 556777888888
Q ss_pred ccCcc
Q 001998 930 IRAPI 934 (984)
Q Consensus 930 ~~c~~ 934 (984)
++||.
T Consensus 213 ~~N~~ 217 (270)
T 2o6q_A 213 QENPW 217 (270)
T ss_dssp CSSCB
T ss_pred cCCCe
Confidence 77764
No 89
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.56 E-value=1.2e-14 Score=160.73 Aligned_cols=234 Identities=15% Similarity=0.127 Sum_probs=160.5
Q ss_pred cCCCCccccCcccccccCccceEEecCCCccccch-hhccCCcccEEecccccccccccc-cccCCCCCCeEEeccCCCc
Q 001998 597 DGGENTVHDIPREIEKLIHLRSLRLAGLKIEELPE-TCCKLFNLQTLDINECYRLKRLPQ-GVGSLVNLRHLVVSLNGDL 674 (984)
Q Consensus 597 ~l~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lP~-~i~~L~~L~~L~l~~~~~l 674 (984)
+.+++.++.+|..+ ..+|++|+|++|.|+.+|. .+.+|++|++|+|++|..++.+|. .+.++++|+++....+..+
T Consensus 15 ~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l 92 (350)
T 4ay9_X 15 LCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNL 92 (350)
T ss_dssp EEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTC
T ss_pred EecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcc
Confidence 67777888899877 3689999999999999987 589999999999999985566775 4688999887665554467
Q ss_pred ccCC-ccCCCCCCCCcCCceEecCCCCcccccccccccccccccCCCeeEEcCCCCCCChhhhhHhcccCCCCCCeEEEE
Q 001998 675 DYLP-KGVERLTSLRTLREFVVSSTGGKYCTKACKVEGLRQLNHLRGTLRIRGLGNVTDVEEAEKADLEKKKNIVGLELR 753 (984)
Q Consensus 675 ~~~p-~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~ 753 (984)
..+| ..+..+++|+.|++..+...... ... +....++..|.+.
T Consensus 93 ~~l~~~~f~~l~~L~~L~l~~n~l~~~~------------~~~------------------------~~~~~~l~~l~l~ 136 (350)
T 4ay9_X 93 LYINPEAFQNLPNLQYLLISNTGIKHLP------------DVH------------------------KIHSLQKVLLDIQ 136 (350)
T ss_dssp CEECTTSBCCCTTCCEEEEEEECCSSCC------------CCT------------------------TCCBSSCEEEEEE
T ss_pred cccCchhhhhccccccccccccccccCC------------chh------------------------hcccchhhhhhhc
Confidence 7775 45788999999988776543210 000 0011122333333
Q ss_pred EcC-CcccccCcCchhhccHHHHhhcCCCC-CCCCeEEEeecCCCCCCCchhhcCCCCcEEEEeCcCCCCcCCC--CCCC
Q 001998 754 FDK-EEAATEGINEENEINHQAISEALRPP-PDLEALEIMHYKGQTAFPSWIVSLNKLKKLKLSSCCKCEIMPP--LGAL 829 (984)
Q Consensus 754 ~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~-~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~l~~--l~~L 829 (984)
.+. .... ....+... ..++.|++++|.+.. +|..+....+|++|.+.+|.....+|. ++.+
T Consensus 137 ~~~~i~~l--------------~~~~f~~~~~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l 201 (350)
T 4ay9_X 137 DNINIHTI--------------ERNSFVGLSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGA 201 (350)
T ss_dssp SCTTCCEE--------------CTTSSTTSBSSCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTE
T ss_pred cccccccc--------------cccchhhcchhhhhhccccccccC-CChhhccccchhHHhhccCCcccCCCHHHhccC
Confidence 211 1110 01122232 468889999998877 777777778899999988777777765 7889
Q ss_pred CCcceeeeccccCceEecceecCccCCCCCCCCCCccCcccccccccccccCCCCcccccCCCCcccCCcccEEeeec
Q 001998 830 PSLEILQIQRMESVKRVGVEFLGIESFNDYAPSSSLSLTAFPKLKELTLFHLDGCEEWDFGKEDVIIMPQLCYLDIRF 907 (984)
Q Consensus 830 p~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~ 907 (984)
++|++|++++|. ++.++. ..|.+|++|...++.+++.+.. +..+++|+.+++.+
T Consensus 202 ~~L~~LdLs~N~-l~~lp~-------------------~~~~~L~~L~~l~~~~l~~lP~----l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 202 SGPVILDISRTR-IHSLPS-------------------YGLENLKKLRARSTYNLKKLPT----LEKLVALMEASLTY 255 (350)
T ss_dssp ECCSEEECTTSC-CCCCCS-------------------SSCTTCCEEECTTCTTCCCCCC----TTTCCSCCEEECSC
T ss_pred cccchhhcCCCC-cCccCh-------------------hhhccchHhhhccCCCcCcCCC----chhCcChhhCcCCC
Confidence 999999998875 554442 3567777777777766655432 34678888888764
No 90
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.55 E-value=1.8e-14 Score=153.35 Aligned_cols=79 Identities=24% Similarity=0.336 Sum_probs=42.7
Q ss_pred ccccCccceEEecCCCccccchhhccCCcccEEecccccccccccccccCCCCCCeEEeccCCCcccCCcc-CCCCCCCC
Q 001998 610 IEKLIHLRSLRLAGLKIEELPETCCKLFNLQTLDINECYRLKRLPQGVGSLVNLRHLVVSLNGDLDYLPKG-VERLTSLR 688 (984)
Q Consensus 610 i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~~p~~-i~~l~~L~ 688 (984)
...+.+|++|++++|.++.++ .+..+++|++|++++|. +..+| .+..+++|++|++++| .+..+|.. ++++++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNK-LHDIS-ALKELTNLTYLILTGN-QLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSC-CCCCG-GGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCC
T ss_pred cccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCC-CCCch-hhcCCCCCCEEECCCC-ccCccChhHhcCCcCCC
Confidence 445556666666666555544 35556666666666655 44443 3556666666666655 33334332 45555555
Q ss_pred cCCc
Q 001998 689 TLRE 692 (984)
Q Consensus 689 ~L~~ 692 (984)
.|++
T Consensus 113 ~L~L 116 (272)
T 3rfs_A 113 ELVL 116 (272)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 5544
No 91
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.55 E-value=9.5e-15 Score=152.25 Aligned_cols=56 Identities=16% Similarity=0.117 Sum_probs=40.9
Q ss_pred CCCCeEEEeecC-CCCCCC-chhhcC-CCCcEEEEeCcCCCCcCCCCCCCCCcceeeecccc
Q 001998 783 PDLEALEIMHYK-GQTAFP-SWIVSL-NKLKKLKLSSCCKCEIMPPLGALPSLEILQIQRME 841 (984)
Q Consensus 783 ~~L~~L~L~~~~-~~~~lp-~~l~~l-~~L~~L~L~~~~~~~~l~~l~~Lp~L~~L~L~~~~ 841 (984)
++|++|++++|. +.. +| ..+..+ ++|+.|++++|.... +|.. .+++|+.|+++++.
T Consensus 179 ~~L~~L~L~~n~~l~~-i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~-~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 179 TKLDAVYLNKNKYLTV-IDKDAFGGVYSGPSLLDVSQTSVTA-LPSK-GLEHLKELIARNTW 237 (239)
T ss_dssp CEEEEEECTTCTTCCE-ECTTTTTTCSBCCSEEECTTCCCCC-CCCT-TCTTCSEEECTTC-
T ss_pred CCCCEEEcCCCCCccc-CCHHHhhccccCCcEEECCCCcccc-CChh-HhccCceeeccCcc
Confidence 678888888884 665 54 456778 899999998886553 4433 67888888887764
No 92
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.54 E-value=4.2e-16 Score=171.93 Aligned_cols=222 Identities=14% Similarity=0.107 Sum_probs=134.4
Q ss_pred ccee-cCCCCccccCccccccc--CccceEEecCCCccccchhhccCCcccEEecccccccc-c-ccccccCCCCCCeEE
Q 001998 593 YGED-DGGENTVHDIPREIEKL--IHLRSLRLAGLKIEELPETCCKLFNLQTLDINECYRLK-R-LPQGVGSLVNLRHLV 667 (984)
Q Consensus 593 ~Lrv-~l~~~~i~~lp~~i~~L--~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~-~-lP~~i~~L~~L~~L~ 667 (984)
.++. +++++.+. |..+..+ .+|++|++++|.+...+..+.++++|++|++++|. +. . +|..+..+++|++|+
T Consensus 48 ~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 48 LWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp TSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEE
T ss_pred hheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCC-cCHHHHHHHHhhCCCCCEEe
Confidence 3445 77776655 5556666 77888888888877776667778888888888876 43 2 676677788888888
Q ss_pred eccCCCcccCCccCCCCCCCCcCCceEecCCCCcccccccccccccccccCCCeeEEcCCCCCCChhhhhHhcccCCCCC
Q 001998 668 VSLNGDLDYLPKGVERLTSLRTLREFVVSSTGGKYCTKACKVEGLRQLNHLRGTLRIRGLGNVTDVEEAEKADLEKKKNI 747 (984)
Q Consensus 668 l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~~~~L 747 (984)
+++|......|..++++++|+.|
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L--------------------------------------------------------- 147 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRL--------------------------------------------------------- 147 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEE---------------------------------------------------------
T ss_pred CcCcccCHHHHHHHhcCCCCCEE---------------------------------------------------------
Confidence 87773222333334444444443
Q ss_pred CeEEEEEc-CCcccccCcCchhhccHHHHhhcCCCCCCCCeEEEeec-CCCCC-CCchhhcCC-CCcEEEEeCcC--CC-
Q 001998 748 VGLELRFD-KEEAATEGINEENEINHQAISEALRPPPDLEALEIMHY-KGQTA-FPSWIVSLN-KLKKLKLSSCC--KC- 820 (984)
Q Consensus 748 ~~L~L~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~-~~~~~-lp~~l~~l~-~L~~L~L~~~~--~~- 820 (984)
++++| ... ...+...+..+++|++|++++| .+... +|..+..++ +|++|+|++|. ..
T Consensus 148 ---~L~~~~~l~-------------~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~ 211 (336)
T 2ast_B 148 ---NLSGCSGFS-------------EFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQK 211 (336)
T ss_dssp ---ECTTCBSCC-------------HHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCH
T ss_pred ---ECCCCCCCC-------------HHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCH
Confidence 33332 111 0112333445678999999988 65532 566677888 99999998884 22
Q ss_pred CcCCC-CCCCCCcceeeeccccCceEecceecCccCCCCCCCCCCccCcccccccccccccCCCCcccccCCCCcccCCc
Q 001998 821 EIMPP-LGALPSLEILQIQRMESVKRVGVEFLGIESFNDYAPSSSLSLTAFPKLKELTLFHLDGCEEWDFGKEDVIIMPQ 899 (984)
Q Consensus 821 ~~l~~-l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~l~~ 899 (984)
..++. ++.+|+|+.|++++|..+...... .+..+++|+.|.+.++.......+ ..+..+++
T Consensus 212 ~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~----------------~l~~l~~L~~L~l~~~~~~~~~~~--~~l~~~~~ 273 (336)
T 2ast_B 212 SDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ----------------EFFQLNYLQHLSLSRCYDIIPETL--LELGEIPT 273 (336)
T ss_dssp HHHHHHHHHCTTCSEEECTTCTTCCGGGGG----------------GGGGCTTCCEEECTTCTTCCGGGG--GGGGGCTT
T ss_pred HHHHHHHhhCCCCCEEeCCCCCcCCHHHHH----------------HHhCCCCCCEeeCCCCCCCCHHHH--HHHhcCCC
Confidence 23333 567888888888887633211110 133556677777666653322211 12345677
Q ss_pred ccEEeeecC
Q 001998 900 LCYLDIRFC 908 (984)
Q Consensus 900 L~~L~l~~c 908 (984)
|++|++++|
T Consensus 274 L~~L~l~~~ 282 (336)
T 2ast_B 274 LKTLQVFGI 282 (336)
T ss_dssp CCEEECTTS
T ss_pred CCEEeccCc
Confidence 777777776
No 93
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.52 E-value=7.9e-13 Score=146.96 Aligned_cols=294 Identities=12% Similarity=0.103 Sum_probs=175.1
Q ss_pred ccCCcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCC-----CC
Q 001998 176 IDVSEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDP-----FD 250 (984)
Q Consensus 176 ~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-----~~ 250 (984)
..+..++||+++++.+.+ +. . +++.|+|++|+|||||++.+++. ... ..+|+.+... .+
T Consensus 10 ~~~~~~~gR~~el~~L~~-l~--------~--~~v~i~G~~G~GKT~L~~~~~~~--~~~---~~~~~~~~~~~~~~~~~ 73 (357)
T 2fna_A 10 DNRKDFFDREKEIEKLKG-LR--------A--PITLVLGLRRTGKSSIIKIGINE--LNL---PYIYLDLRKFEERNYIS 73 (357)
T ss_dssp CSGGGSCCCHHHHHHHHH-TC--------S--SEEEEEESTTSSHHHHHHHHHHH--HTC---CEEEEEGGGGTTCSCCC
T ss_pred CCHHHhcChHHHHHHHHH-hc--------C--CcEEEECCCCCCHHHHHHHHHHh--cCC---CEEEEEchhhccccCCC
Confidence 345689999999999999 73 1 48999999999999999999874 222 2578887642 34
Q ss_pred HHHHHHHHHHHhcC-------------C-------CC---------CcccHHHHHHHHHHHhCCCceEEEEEcCCCCCc-
Q 001998 251 EFSVAKAIIEELEG-------------S-------AT---------DLHELNSLLRRIGANIAGQKFFMVLDNLWTDDY- 300 (984)
Q Consensus 251 ~~~~~~~i~~~l~~-------------~-------~~---------~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~- 300 (984)
...++..+.+.+.. . .. .......+...+.+.-. ++++|||||++.-+.
T Consensus 74 ~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~ 152 (357)
T 2fna_A 74 YKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKL 152 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGC
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhcc
Confidence 45555555444310 0 00 12345556666655433 499999999965321
Q ss_pred --CChhhHHHhhcCCCCCcEEEEEccchHHHh-h---------c-CC-CCeEeCCCCChHhHHHHHHHHhcCCCCCCCch
Q 001998 301 --RKWEPFRNCLMNGLRGSKILLTTRKETVAR-M---------M-ES-TDIVYVQGLSEPECWSLFRRFAFSGRTPLECD 366 (984)
Q Consensus 301 --~~~~~l~~~l~~~~~gs~iiiTtr~~~v~~-~---------~-~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~ 366 (984)
..|..+...+.....+.++|+|++...... . + +. ...+.+.+|+.+++.+++........... +
T Consensus 153 ~~~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~--~ 230 (357)
T 2fna_A 153 RGVNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDF--K 230 (357)
T ss_dssp TTCCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCC--C
T ss_pred CchhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCC--C
Confidence 233333333333234779999999865322 1 1 11 25788999999999999987532111111 1
Q ss_pred hHHHHHHHHHHhcCCChHHHHHHHHhhccCCCHHHHHHH-Hhhhhhhhhhhcccccchhhccc--cCCChhhhhhhhhcc
Q 001998 367 QLEEIGRGIVRKCKGLPLAAKTIGSLLQFKRTKEEWQSV-LDSEMWQLEEFERGLSAPLFLSY--NDLPFEIKRCFSYCA 443 (984)
Q Consensus 367 ~l~~~~~~i~~~~~GlPLai~~~~~~l~~~~~~~~w~~~-l~~~~~~~~~~~~~~~~~l~~sy--~~L~~~~k~cfl~~~ 443 (984)
.. ..|++.|+|+|+++..++..+....+...|..- .+.....+ ...+. .+.+ ..||+..+..+..+|
T Consensus 231 ~~----~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~---~~~~~~~~l~~~~~~~l~~la 300 (357)
T 2fna_A 231 DY----EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKKLI---LKEFE---NFLHGREIARKRYLNIMRTLS 300 (357)
T ss_dssp CH----HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH---HHHHH---HHHTTCGGGHHHHHHHHHHHT
T ss_pred cH----HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHHHHH---HHHHH---HHhhccccccHHHHHHHHHHH
Confidence 11 679999999999999998876543333334221 11100000 00111 1111 167888999999999
Q ss_pred cCCCCCccChHHHHHHHH-HcCCcCCCCCchHHHhHHHHHHHHhhcccccceecCCCCceeeEEechHHHHHH
Q 001998 444 IFPKGSSLKKDELVKLWM-AQGYIVPKGNKEMEVIGLEYFDCLASRSFYQQFVKDDDNMVIGCTMHDVVHDFA 515 (984)
Q Consensus 444 ~fp~~~~i~~~~li~~Wi-aeg~i~~~~~~~~e~~~~~~~~~L~~r~l~~~~~~~~~~~~~~~~~Hdlv~~~~ 515 (984)
+ +. +...+....- ..|. .........+++.|++.+++.... + .+...|++++++.
T Consensus 301 ~---g~--~~~~l~~~~~~~~g~------~~~~~~~~~~L~~L~~~gli~~~~----~--~y~f~~~~~~~~l 356 (357)
T 2fna_A 301 K---CG--KWSDVKRALELEEGI------EISDSEIYNYLTQLTKHSWIIKEG----E--KYCPSEPLISLAF 356 (357)
T ss_dssp T---CB--CHHHHHHHHHHHHCS------CCCHHHHHHHHHHHHHTTSEEESS----S--CEEESSHHHHHHT
T ss_pred c---CC--CHHHHHHHHHHhcCC------CCCHHHHHHHHHHHHhCCCEEecC----C--EEEecCHHHHHhh
Confidence 8 22 4444443211 1121 001234567899999999986431 2 2223578888753
No 94
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.51 E-value=4.9e-16 Score=174.88 Aligned_cols=244 Identities=15% Similarity=0.112 Sum_probs=163.8
Q ss_pred ccccccccCCCceeEEeccCCCcchh--hhHHhhhccccccee-cCCCCcccc----Ccccc-------cccCccceEEe
Q 001998 556 ASFPVSIFNAKKLRSLLIHSPLEVLS--PVLKGLFDHLTYGED-DGGENTVHD----IPREI-------EKLIHLRSLRL 621 (984)
Q Consensus 556 ~~~~~~~~~~~~Lr~L~l~~~~~~~~--~~~~~~~~~l~~Lrv-~l~~~~i~~----lp~~i-------~~L~~Lr~L~L 621 (984)
..++..+..+++|++|++.+|..... ..+...+..++.|+. ++++|.+.. +|..+ .++++|++|+|
T Consensus 22 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L 101 (386)
T 2ca6_A 22 KSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL 101 (386)
T ss_dssp HTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred HHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence 34556677888999999999862211 113344678888888 888875543 34443 68899999999
Q ss_pred cCCCccc-----cchhhccCCcccEEecccccccc-----cccccccCC---------CCCCeEEeccCCCc-ccCC---
Q 001998 622 AGLKIEE-----LPETCCKLFNLQTLDINECYRLK-----RLPQGVGSL---------VNLRHLVVSLNGDL-DYLP--- 678 (984)
Q Consensus 622 ~~~~i~~-----lp~~i~~L~~L~~L~L~~~~~l~-----~lP~~i~~L---------~~L~~L~l~~~~~l-~~~p--- 678 (984)
++|.+.. +|..+.++++|++|+|++|. +. .++..+..+ ++|++|++++|... ..+|
T Consensus 102 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 180 (386)
T 2ca6_A 102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA 180 (386)
T ss_dssp CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHH
Confidence 9999875 78888999999999999987 43 234444445 89999999888432 2333
Q ss_pred ccCCCCCCCCcCCceEecCCCCcccccccccccccccccCCCeeEEcCCCCCCChhhhhHhcccCCCCCCeEEEEEcCCc
Q 001998 679 KGVERLTSLRTLREFVVSSTGGKYCTKACKVEGLRQLNHLRGTLRIRGLGNVTDVEEAEKADLEKKKNIVGLELRFDKEE 758 (984)
Q Consensus 679 ~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~ 758 (984)
..+..+++|++|++..+.... ..........+..+++|+.|+|++|..+
T Consensus 181 ~~l~~~~~L~~L~L~~n~l~~-------------------------------~g~~~l~~~~l~~~~~L~~L~Ls~n~l~ 229 (386)
T 2ca6_A 181 KTFQSHRLLHTVKMVQNGIRP-------------------------------EGIEHLLLEGLAYCQELKVLDLQDNTFT 229 (386)
T ss_dssp HHHHHCTTCCEEECCSSCCCH-------------------------------HHHHHHHHTTGGGCTTCCEEECCSSCCH
T ss_pred HHHHhCCCcCEEECcCCCCCH-------------------------------hHHHHHHHHHhhcCCCccEEECcCCCCC
Confidence 234556666666554322110 0000111124567788888888887653
Q ss_pred ccccCcCchhhccHHHHhhcCCCCCCCCeEEEeecCCCCC----CCchhh--cCCCCcEEEEeCcCCCC----cCCC-C-
Q 001998 759 AATEGINEENEINHQAISEALRPPPDLEALEIMHYKGQTA----FPSWIV--SLNKLKKLKLSSCCKCE----IMPP-L- 826 (984)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~----lp~~l~--~l~~L~~L~L~~~~~~~----~l~~-l- 826 (984)
.. ....++..+..+++|++|+|++|.+... +|.++. .+++|++|+|++|.... .+|. +
T Consensus 230 ~~----------g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~ 299 (386)
T 2ca6_A 230 HL----------GSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVID 299 (386)
T ss_dssp HH----------HHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHH
T ss_pred cH----------HHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHH
Confidence 21 1234566677788999999999987652 355553 38899999999987665 2544 4
Q ss_pred CCCCCcceeeecccc
Q 001998 827 GALPSLEILQIQRME 841 (984)
Q Consensus 827 ~~Lp~L~~L~L~~~~ 841 (984)
..+|+|++|++++|.
T Consensus 300 ~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 300 EKMPDLLFLELNGNR 314 (386)
T ss_dssp HHCTTCCEEECTTSB
T ss_pred hcCCCceEEEccCCc
Confidence 568999999998876
No 95
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.50 E-value=4.1e-14 Score=150.49 Aligned_cols=57 Identities=12% Similarity=0.037 Sum_probs=41.6
Q ss_pred CCCCCCCCeEEEeecCCCCCCCchhhcCCCCcEEEEeCcCCCCcCCCCCCCCCcceeeecccc
Q 001998 779 LRPPPDLEALEIMHYKGQTAFPSWIVSLNKLKKLKLSSCCKCEIMPPLGALPSLEILQIQRME 841 (984)
Q Consensus 779 l~~~~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~l~~l~~Lp~L~~L~L~~~~ 841 (984)
+..+++|++|++++|.+.+..|..+..+++|+.|++++|+.. +.+|+|+.|++..|.
T Consensus 177 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~l~~~~n~ 233 (272)
T 3rfs_A 177 FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINK 233 (272)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC------CCTTTTHHHHHHHHH
T ss_pred hcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc------ccCcHHHHHHHHHHh
Confidence 455678888888888887734445678888888888888543 456778888877665
No 96
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.50 E-value=1.1e-15 Score=182.86 Aligned_cols=131 Identities=15% Similarity=0.064 Sum_probs=95.8
Q ss_pred cCCCceeEEeccCCCcchhhhHHhhhccccccee-cCCCC-cccc--CcccccccCccceEEecCCCccc-----cchhh
Q 001998 563 FNAKKLRSLLIHSPLEVLSPVLKGLFDHLTYGED-DGGEN-TVHD--IPREIEKLIHLRSLRLAGLKIEE-----LPETC 633 (984)
Q Consensus 563 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lrv-~l~~~-~i~~--lp~~i~~L~~Lr~L~L~~~~i~~-----lp~~i 633 (984)
..+++|+.|++.++... ...+..+...++.|+. ++++| .+.. ++..+.++++|++|+|++|.++. ++...
T Consensus 102 ~~~~~L~~L~L~~~~~~-~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~ 180 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMVVT-DDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP 180 (594)
T ss_dssp HHCTTCCEEEEESCBCC-HHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSC
T ss_pred HhCCCCCeEEeeCcEEc-HHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHh
Confidence 46789999999998622 2223333346888888 88888 4544 56666689999999999998663 34444
Q ss_pred ccCCcccEEeccccc-cc--ccccccccCCCCCCeEEeccCCCcccCCccCCCCCCCCcCCceE
Q 001998 634 CKLFNLQTLDINECY-RL--KRLPQGVGSLVNLRHLVVSLNGDLDYLPKGVERLTSLRTLREFV 694 (984)
Q Consensus 634 ~~L~~L~~L~L~~~~-~l--~~lP~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~ 694 (984)
..+++|++|++++|. .+ ..++.-+.++++|++|++++|..+..+|..+.++++|+.|.+..
T Consensus 181 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~ 244 (594)
T 2p1m_B 181 DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGG 244 (594)
T ss_dssp TTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSB
T ss_pred hcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEccccc
Confidence 577899999999986 11 22333345689999999999977777777788889999987543
No 97
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.50 E-value=1.1e-13 Score=150.27 Aligned_cols=224 Identities=17% Similarity=0.109 Sum_probs=156.0
Q ss_pred CCceeEEeccCCCcchhhhHHhh--hccccccee-cCCCCcccc-Ccccc--cccCccceEEecCCCcccc-c----hhh
Q 001998 565 AKKLRSLLIHSPLEVLSPVLKGL--FDHLTYGED-DGGENTVHD-IPREI--EKLIHLRSLRLAGLKIEEL-P----ETC 633 (984)
Q Consensus 565 ~~~Lr~L~l~~~~~~~~~~~~~~--~~~l~~Lrv-~l~~~~i~~-lp~~i--~~L~~Lr~L~L~~~~i~~l-p----~~i 633 (984)
...++.|.+.+....... +..+ +..+..|+. ++++|.+.. .|..+ +++.+|++|+|++|.+... | ..+
T Consensus 63 ~~~l~~l~l~~~~~~~~~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~ 141 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQL-LVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ 141 (310)
T ss_dssp SCCCCEEEECSCCCBHHH-HHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred hcceeEEEEeCCcCCHHH-HHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence 345677777666522111 2221 223455787 888888764 56666 8899999999999998842 2 345
Q ss_pred ccCCcccEEecccccccccc-cccccCCCCCCeEEeccCCCccc--CC--ccCCCCCCCCcCCceEecCCCCcccccccc
Q 001998 634 CKLFNLQTLDINECYRLKRL-PQGVGSLVNLRHLVVSLNGDLDY--LP--KGVERLTSLRTLREFVVSSTGGKYCTKACK 708 (984)
Q Consensus 634 ~~L~~L~~L~L~~~~~l~~l-P~~i~~L~~L~~L~l~~~~~l~~--~p--~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~ 708 (984)
..+++|++|++++|. +..+ |..+..+++|++|++++|..... ++ ..++.+++|++|++..+...
T Consensus 142 ~~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~---------- 210 (310)
T 4glp_A 142 WLKPGLKVLSIAQAH-SPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME---------- 210 (310)
T ss_dssp TBCSCCCEEEEECCS-SCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC----------
T ss_pred hhccCCCEEEeeCCC-cchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC----------
Confidence 679999999999998 5554 46788999999999999853321 22 23467888888876543221
Q ss_pred cccccccccCCCeeEEcCCCCCCChhhhhHhcccCCCCCCeEEEEEcCCcccccCcCchhhccHHHHhhc---CCCCCCC
Q 001998 709 VEGLRQLNHLRGTLRIRGLGNVTDVEEAEKADLEKKKNIVGLELRFDKEEAATEGINEENEINHQAISEA---LRPPPDL 785 (984)
Q Consensus 709 l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~~~L 785 (984)
.........+..+++|+.|+|++|..... .+.. +..+++|
T Consensus 211 -----------------------~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~--------------~p~~~~~~~~~~~L 253 (310)
T 4glp_A 211 -----------------------TPTGVCAALAAAGVQPHSLDLSHNSLRAT--------------VNPSAPRCMWSSAL 253 (310)
T ss_dssp -----------------------CHHHHHHHHHHHTCCCSSEECTTSCCCCC--------------CCSCCSSCCCCTTC
T ss_pred -----------------------chHHHHHHHHhcCCCCCEEECCCCCCCcc--------------chhhHHhccCcCcC
Confidence 11121112235667899999998876533 1222 3334799
Q ss_pred CeEEEeecCCCCCCCchhhcCCCCcEEEEeCcCCCCcCCCCCCCCCcceeeecccc
Q 001998 786 EALEIMHYKGQTAFPSWIVSLNKLKKLKLSSCCKCEIMPPLGALPSLEILQIQRME 841 (984)
Q Consensus 786 ~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~l~~l~~Lp~L~~L~L~~~~ 841 (984)
++|++++|.+.. +|.++. ++|+.|+|++|.... +|.+..+++|+.|++++|+
T Consensus 254 ~~L~Ls~N~l~~-lp~~~~--~~L~~L~Ls~N~l~~-~~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 254 NSLNLSFAGLEQ-VPKGLP--AKLRVLDLSSNRLNR-APQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp CCEECCSSCCCS-CCSCCC--SCCSCEECCSCCCCS-CCCTTSCCCCSCEECSSTT
T ss_pred CEEECCCCCCCc-hhhhhc--CCCCEEECCCCcCCC-CchhhhCCCccEEECcCCC
Confidence 999999999986 898774 899999999997654 4667889999999999886
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.48 E-value=9.5e-14 Score=149.02 Aligned_cols=60 Identities=23% Similarity=0.310 Sum_probs=47.3
Q ss_pred CCCCCCCCeEEEeecCCCCCCCchhhcCCCCcEEEEeCcCCCCcCCCCCCCCCcceeeecccc
Q 001998 779 LRPPPDLEALEIMHYKGQTAFPSWIVSLNKLKKLKLSSCCKCEIMPPLGALPSLEILQIQRME 841 (984)
Q Consensus 779 l~~~~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~l~~l~~Lp~L~~L~L~~~~ 841 (984)
+..+++|++|++++|.+.. ++. +..+++|+.|++++|... .++.+..+++|+.|++++|.
T Consensus 152 l~~l~~L~~L~L~~N~l~~-~~~-l~~l~~L~~L~L~~N~i~-~l~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 152 LSRLTKLDTLSLEDNQISD-IVP-LAGLTKLQNLYLSKNHIS-DLRALAGLKNLDVLELFSQE 211 (291)
T ss_dssp GGGCTTCSEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCC-BCGGGTTCTTCSEEEEEEEE
T ss_pred hccCCCCCEEEccCCcccc-chh-hcCCCccCEEECCCCcCC-CChhhccCCCCCEEECcCCc
Confidence 4456788888888888777 655 778889999999888544 45668889999999998875
No 99
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.47 E-value=5.2e-13 Score=147.65 Aligned_cols=246 Identities=15% Similarity=0.080 Sum_probs=169.4
Q ss_pred ccccCccceEEecCCCccccchhhccCCcccEEecccccccccccc-cccCCCCCCeEEeccCCCcccCCcc-CCCCCCC
Q 001998 610 IEKLIHLRSLRLAGLKIEELPETCCKLFNLQTLDINECYRLKRLPQ-GVGSLVNLRHLVVSLNGDLDYLPKG-VERLTSL 687 (984)
Q Consensus 610 i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~-~i~~L~~L~~L~l~~~~~l~~~p~~-i~~l~~L 687 (984)
++.+. -+.++.+++.++++|..+ .++|++|+|++|. ++.+|. .+.+|++|++|++++|.....+|.+ +.++++|
T Consensus 6 ~C~C~-~~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l 81 (350)
T 4ay9_X 6 ICHCS-NRVFLCQESKVTEIPSDL--PRNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKL 81 (350)
T ss_dssp SSEEE-TTEEEEESTTCCSCCTTC--CTTCSEEEEESCC-CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTC
T ss_pred ccEee-CCEEEecCCCCCccCcCc--CCCCCEEEccCCc-CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhh
Confidence 44443 367888999999999887 4789999999998 899996 4799999999999999666667654 5667776
Q ss_pred CcCCceEecCCCCcccccccccccccccccCCCeeEEcCCCCCCChhhhhHhcccCCCCCCeEEEEEcCCcccccCcCch
Q 001998 688 RTLREFVVSSTGGKYCTKACKVEGLRQLNHLRGTLRIRGLGNVTDVEEAEKADLEKKKNIVGLELRFDKEEAATEGINEE 767 (984)
Q Consensus 688 ~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~ 767 (984)
+.+...... ++. .+ ....+..+++|+.|+++.|......
T Consensus 82 ~~~l~~~~N--------------------~l~-~l--------------~~~~f~~l~~L~~L~l~~n~l~~~~------ 120 (350)
T 4ay9_X 82 HEIRIEKAN--------------------NLL-YI--------------NPEAFQNLPNLQYLLISNTGIKHLP------ 120 (350)
T ss_dssp CEEEEEEET--------------------TCC-EE--------------CTTSBCCCTTCCEEEEEEECCSSCC------
T ss_pred hhhhcccCC--------------------ccc-cc--------------CchhhhhccccccccccccccccCC------
Confidence 654322211 111 11 0123566788999999988764321
Q ss_pred hhccHHHHhhcCCCCCCCCeEEEeecCCCCCCCc-hhhcC-CCCcEEEEeCcCCCCcCCCCCCCCCcceeeeccccCceE
Q 001998 768 NEINHQAISEALRPPPDLEALEIMHYKGQTAFPS-WIVSL-NKLKKLKLSSCCKCEIMPPLGALPSLEILQIQRMESVKR 845 (984)
Q Consensus 768 ~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~lp~-~l~~l-~~L~~L~L~~~~~~~~l~~l~~Lp~L~~L~L~~~~~l~~ 845 (984)
...+....++..|.+.++.....+|. .+..+ ..|+.|++++|......+.....++|+.|.+.++..++.
T Consensus 121 --------~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~ 192 (350)
T 4ay9_X 121 --------DVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEE 192 (350)
T ss_dssp --------CCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCC
T ss_pred --------chhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccC
Confidence 11233445677888877544333543 34444 468899999987665555555677899999988776776
Q ss_pred ecceecCccCCCCCCCCCCccCcccccccccccccCCCCcccccCCCCcccCCcccEEeeecCcCCCCCCcCCCCCCCcC
Q 001998 846 VGVEFLGIESFNDYAPSSSLSLTAFPKLKELTLFHLDGCEEWDFGKEDVIIMPQLCYLDIRFCRKLKSLPDQLLQSSTLE 925 (984)
Q Consensus 846 ~~~~~~~~~~~~~l~~~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~ 925 (984)
++.+. +..+++|+.|++++. ....+... .+.+|+.|.+.+|..++.+|. +..+++|+
T Consensus 193 i~~~~----------------f~~l~~L~~LdLs~N---~l~~lp~~---~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~ 249 (350)
T 4ay9_X 193 LPNDV----------------FHGASGPVILDISRT---RIHSLPSY---GLENLKKLRARSTYNLKKLPT-LEKLVALM 249 (350)
T ss_dssp CCTTT----------------TTTEECCSEEECTTS---CCCCCCSS---SCTTCCEEECTTCTTCCCCCC-TTTCCSCC
T ss_pred CCHHH----------------hccCcccchhhcCCC---CcCccChh---hhccchHhhhccCCCcCcCCC-chhCcChh
Confidence 65422 245667777776654 22223332 478899999999999999995 77899999
Q ss_pred eEEecc
Q 001998 926 KLRIIR 931 (984)
Q Consensus 926 ~L~i~~ 931 (984)
.+++.+
T Consensus 250 ~l~l~~ 255 (350)
T 4ay9_X 250 EASLTY 255 (350)
T ss_dssp EEECSC
T ss_pred hCcCCC
Confidence 999875
No 100
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.47 E-value=1e-13 Score=150.56 Aligned_cols=201 Identities=16% Similarity=0.149 Sum_probs=116.8
Q ss_pred ccCccceEEecCCCcc-ccchhh--ccCCcccEEeccccccccccc----ccccCCCCCCeEEeccCCCcccCCccCCCC
Q 001998 612 KLIHLRSLRLAGLKIE-ELPETC--CKLFNLQTLDINECYRLKRLP----QGVGSLVNLRHLVVSLNGDLDYLPKGVERL 684 (984)
Q Consensus 612 ~L~~Lr~L~L~~~~i~-~lp~~i--~~L~~L~~L~L~~~~~l~~lP----~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l 684 (984)
.+.+|++|+|++|.+. ..|..+ .++++|++|++++|......| ..+..+++|++|++++|......|..++.+
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 168 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF 168 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence 3456777777777766 455555 777777777777776322222 234567777777777773322222345555
Q ss_pred CCCCcCCceEecCCCCcccccccccccccccccCCCeeEEcCCCCCCChhhhhHhcccCCCCCCeEEEEEcCCcccccCc
Q 001998 685 TSLRTLREFVVSSTGGKYCTKACKVEGLRQLNHLRGTLRIRGLGNVTDVEEAEKADLEKKKNIVGLELRFDKEEAATEGI 764 (984)
Q Consensus 685 ~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~ 764 (984)
++|++|++ ++|.....
T Consensus 169 ~~L~~L~L------------------------------------------------------------s~N~l~~~---- 184 (310)
T 4glp_A 169 PALTSLDL------------------------------------------------------------SDNPGLGE---- 184 (310)
T ss_dssp TTCCEEEC------------------------------------------------------------CSCTTCHH----
T ss_pred CCCCEEEC------------------------------------------------------------CCCCCccc----
Confidence 55555543 33322100
Q ss_pred CchhhccHHHHh--hcCCCCCCCCeEEEeecCCCCCCCch----hhcCCCCcEEEEeCcCCCCcCCC-CCCC---CCcce
Q 001998 765 NEENEINHQAIS--EALRPPPDLEALEIMHYKGQTAFPSW----IVSLNKLKKLKLSSCCKCEIMPP-LGAL---PSLEI 834 (984)
Q Consensus 765 ~~~~~~~~~~~~--~~l~~~~~L~~L~L~~~~~~~~lp~~----l~~l~~L~~L~L~~~~~~~~l~~-l~~L---p~L~~ 834 (984)
..+. ..+..+++|++|++++|.+.. +|.. +..+++|++|+|++|......|. ++.+ ++|++
T Consensus 185 --------~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~ 255 (310)
T 4glp_A 185 --------RGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNS 255 (310)
T ss_dssp --------HHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCC
T ss_pred --------hhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCE
Confidence 1111 123456778888888887764 4442 45778888888888876665333 4444 67888
Q ss_pred eeeccccCceEecceecCccCCCCCCCCCCccCcccccccccccccCCCCcccccCCCCcccCCcccEEeeecCcCCCCC
Q 001998 835 LQIQRMESVKRVGVEFLGIESFNDYAPSSSLSLTAFPKLKELTLFHLDGCEEWDFGKEDVIIMPQLCYLDIRFCRKLKSL 914 (984)
Q Consensus 835 L~L~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l 914 (984)
|++++|. ++.++ .. .+++|++|++++|. +..+
T Consensus 256 L~Ls~N~-l~~lp--------------------------------------------~~--~~~~L~~L~Ls~N~-l~~~ 287 (310)
T 4glp_A 256 LNLSFAG-LEQVP--------------------------------------------KG--LPAKLRVLDLSSNR-LNRA 287 (310)
T ss_dssp EECCSSC-CCSCC--------------------------------------------SC--CCSCCSCEECCSCC-CCSC
T ss_pred EECCCCC-CCchh--------------------------------------------hh--hcCCCCEEECCCCc-CCCC
Confidence 8887764 21111 00 12566777777764 5555
Q ss_pred CcCCCCCCCcCeEEeccCcc
Q 001998 915 PDQLLQSSTLEKLRIIRAPI 934 (984)
Q Consensus 915 p~~~~~l~~L~~L~i~~c~~ 934 (984)
|. +..+++|+.|++++|+.
T Consensus 288 ~~-~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 288 PQ-PDELPEVDNLTLDGNPF 306 (310)
T ss_dssp CC-TTSCCCCSCEECSSTTT
T ss_pred ch-hhhCCCccEEECcCCCC
Confidence 54 45567777777777764
No 101
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.47 E-value=1.8e-15 Score=170.23 Aligned_cols=212 Identities=15% Similarity=0.131 Sum_probs=125.5
Q ss_pred hhccccccee-cCCCCcccc-----CcccccccCccceEEecCCCcc----ccchhh-------ccCCcccEEecccccc
Q 001998 587 LFDHLTYGED-DGGENTVHD-----IPREIEKLIHLRSLRLAGLKIE----ELPETC-------CKLFNLQTLDINECYR 649 (984)
Q Consensus 587 ~~~~l~~Lrv-~l~~~~i~~-----lp~~i~~L~~Lr~L~L~~~~i~----~lp~~i-------~~L~~L~~L~L~~~~~ 649 (984)
.+..++.|+. ++++|.+.. ++..+.++++|++|+|++|.+. .+|..+ .++++|++|+|++|.
T Consensus 27 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~- 105 (386)
T 2ca6_A 27 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA- 105 (386)
T ss_dssp HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC-
T ss_pred HHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc-
Confidence 3556666777 777776553 3344666777777777776543 234333 566777777777766
Q ss_pred ccc-----ccccccCCCCCCeEEeccCCCccc----CCccCCCC---------CCCCcCCceEecCCCCccccccccccc
Q 001998 650 LKR-----LPQGVGSLVNLRHLVVSLNGDLDY----LPKGVERL---------TSLRTLREFVVSSTGGKYCTKACKVEG 711 (984)
Q Consensus 650 l~~-----lP~~i~~L~~L~~L~l~~~~~l~~----~p~~i~~l---------~~L~~L~~~~~~~~~~~~~~~~~~l~~ 711 (984)
+.. +|..+.++++|++|++++|..... ++..+..+ ++|++|++..+....
T Consensus 106 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~------------ 173 (386)
T 2ca6_A 106 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN------------ 173 (386)
T ss_dssp CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG------------
T ss_pred CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc------------
Confidence 433 666667777777777776632111 11112222 444444332211110
Q ss_pred ccccccCCCeeEEcCCCCCCChhhhhHhcccCCCCCCeEEEEEcCCcccccCcCchhhccHHHHhh-cCCCCCCCCeEEE
Q 001998 712 LRQLNHLRGTLRIRGLGNVTDVEEAEKADLEKKKNIVGLELRFDKEEAATEGINEENEINHQAISE-ALRPPPDLEALEI 790 (984)
Q Consensus 712 L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~L~~L~L 790 (984)
..-......+..+++|+.|++++|..... ....+.. .+..+++|++|+|
T Consensus 174 --------------------~~~~~l~~~l~~~~~L~~L~L~~n~l~~~----------g~~~l~~~~l~~~~~L~~L~L 223 (386)
T 2ca6_A 174 --------------------GSMKEWAKTFQSHRLLHTVKMVQNGIRPE----------GIEHLLLEGLAYCQELKVLDL 223 (386)
T ss_dssp --------------------GGHHHHHHHHHHCTTCCEEECCSSCCCHH----------HHHHHHHTTGGGCTTCCEEEC
T ss_pred --------------------HHHHHHHHHHHhCCCcCEEECcCCCCCHh----------HHHHHHHHHhhcCCCccEEEC
Confidence 00011123455667888888888765421 1112333 6777888999999
Q ss_pred eecCCC----CCCCchhhcCCCCcEEEEeCcCCCCc----CCC-C--CCCCCcceeeecccc
Q 001998 791 MHYKGQ----TAFPSWIVSLNKLKKLKLSSCCKCEI----MPP-L--GALPSLEILQIQRME 841 (984)
Q Consensus 791 ~~~~~~----~~lp~~l~~l~~L~~L~L~~~~~~~~----l~~-l--~~Lp~L~~L~L~~~~ 841 (984)
++|.+. ..+|.++..+++|++|+|++|..... ++. + +.+++|++|+|++|.
T Consensus 224 s~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~ 285 (386)
T 2ca6_A 224 QDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE 285 (386)
T ss_dssp CSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred cCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc
Confidence 988873 33677788888999999988875442 222 3 458889999998876
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.45 E-value=1.7e-13 Score=161.48 Aligned_cols=77 Identities=23% Similarity=0.298 Sum_probs=37.3
Q ss_pred ccccee-cCCCCccccCcccccccCccceEEecCCCccccchhhccCCcccEEecccccccccccccccCCCCCCeEEec
Q 001998 591 LTYGED-DGGENTVHDIPREIEKLIHLRSLRLAGLKIEELPETCCKLFNLQTLDINECYRLKRLPQGVGSLVNLRHLVVS 669 (984)
Q Consensus 591 l~~Lrv-~l~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~ 669 (984)
+..|+. ++++|.+..+| .++.|++|++|+|++|.+..+|. +++|++|+.|+|++|. +..+| .+..|++|++|+++
T Consensus 42 L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L~Ls 117 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENK-IKDLS-SLKDLKKLKSLSLE 117 (605)
T ss_dssp HTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSC-CCCCT-TSTTCTTCCEEECT
T ss_pred CCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCC-CCCCh-hhccCCCCCEEEec
Confidence 344444 44444444444 24455555555555555554443 4455555555555544 44443 24555555555555
Q ss_pred cC
Q 001998 670 LN 671 (984)
Q Consensus 670 ~~ 671 (984)
+|
T Consensus 118 ~N 119 (605)
T 1m9s_A 118 HN 119 (605)
T ss_dssp TS
T ss_pred CC
Confidence 44
No 103
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.45 E-value=1.3e-13 Score=145.53 Aligned_cols=166 Identities=20% Similarity=0.209 Sum_probs=126.5
Q ss_pred cccccee-cCCCCccccCcccccccCccceEEecCCCccccchhhccCCcccEEecccccccccccccccCCCCCCeEEe
Q 001998 590 HLTYGED-DGGENTVHDIPREIEKLIHLRSLRLAGLKIEELPETCCKLFNLQTLDINECYRLKRLPQGVGSLVNLRHLVV 668 (984)
Q Consensus 590 ~l~~Lrv-~l~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l 668 (984)
.+..+.. +++++.+..++ .+..+.+|++|++++|.++.+| .+..+++|++|++++|. +..+|. +.++++|++|++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQ-ISDLSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCSSCCEEEC
T ss_pred HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCc-cCCChh-hccCCCCCEEEC
Confidence 4455555 77888888887 6889999999999999999988 78899999999999987 888887 899999999999
Q ss_pred ccCCCcccCCccCCCCCCCCcCCceEecCCCCcccccccccccccccccCCCeeEEcCCCCCCChhhhhHhcccCCCCCC
Q 001998 669 SLNGDLDYLPKGVERLTSLRTLREFVVSSTGGKYCTKACKVEGLRQLNHLRGTLRIRGLGNVTDVEEAEKADLEKKKNIV 748 (984)
Q Consensus 669 ~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~~~~L~ 748 (984)
++| .+..+|... . ++|+.
T Consensus 93 ~~N-~l~~l~~~~-~-~~L~~----------------------------------------------------------- 110 (263)
T 1xeu_A 93 NRN-RLKNLNGIP-S-ACLSR----------------------------------------------------------- 110 (263)
T ss_dssp CSS-CCSCCTTCC-C-SSCCE-----------------------------------------------------------
T ss_pred CCC-ccCCcCccc-c-CcccE-----------------------------------------------------------
Confidence 988 444444311 1 33333
Q ss_pred eEEEEEcCCcccccCcCchhhccHHHHhhcCCCCCCCCeEEEeecCCCCCCCchhhcCCCCcEEEEeCcCCCCcCCCCCC
Q 001998 749 GLELRFDKEEAATEGINEENEINHQAISEALRPPPDLEALEIMHYKGQTAFPSWIVSLNKLKKLKLSSCCKCEIMPPLGA 828 (984)
Q Consensus 749 ~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~l~~l~~ 828 (984)
|+++.|..... +.+..+++|++|++++|.+.+ +| .+..+++|+.|++++|..... +.+..
T Consensus 111 -L~L~~N~l~~~----------------~~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~-~~l~~ 170 (263)
T 1xeu_A 111 -LFLDNNELRDT----------------DSLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT-GGLTR 170 (263)
T ss_dssp -EECCSSCCSBS----------------GGGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC-TTSTT
T ss_pred -EEccCCccCCC----------------hhhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch-HHhcc
Confidence 33333332111 234556788999999998877 65 678899999999999976554 67889
Q ss_pred CCCcceeeecccc
Q 001998 829 LPSLEILQIQRME 841 (984)
Q Consensus 829 Lp~L~~L~L~~~~ 841 (984)
+++|+.|++++|.
T Consensus 171 l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 171 LKKVNWIDLTGQK 183 (263)
T ss_dssp CCCCCEEEEEEEE
T ss_pred CCCCCEEeCCCCc
Confidence 9999999999876
No 104
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.44 E-value=7.6e-13 Score=138.83 Aligned_cols=169 Identities=21% Similarity=0.221 Sum_probs=122.0
Q ss_pred cee-cCCCCccccCcccccccCccceEEecCCCccccch-hhccCCcccEEeccccccccccc-ccccCCCCCCeEEecc
Q 001998 594 GED-DGGENTVHDIPREIEKLIHLRSLRLAGLKIEELPE-TCCKLFNLQTLDINECYRLKRLP-QGVGSLVNLRHLVVSL 670 (984)
Q Consensus 594 Lrv-~l~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lP-~~i~~L~~L~~L~l~~ 670 (984)
.+. +++++.+..+|..+. .+|++|+|++|.+..++. .+.++++|++|+|++|. +..+| ..+..+++|++|++++
T Consensus 16 ~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 16 KKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ-LQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTT
T ss_pred CeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCc-CCccCHhHhccCCcCCEEECCC
Confidence 444 788888888887766 588999999999887655 68889999999999987 55555 4478889999999988
Q ss_pred CCCcccCCc-cCCCCCCCCcCCceEecCCCCcccccccccccccccccCCCeeEEcCCCCCCChhhhhHhcccCCCCCCe
Q 001998 671 NGDLDYLPK-GVERLTSLRTLREFVVSSTGGKYCTKACKVEGLRQLNHLRGTLRIRGLGNVTDVEEAEKADLEKKKNIVG 749 (984)
Q Consensus 671 ~~~l~~~p~-~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~ 749 (984)
| .+..+|. .+..+++|+.|++..
T Consensus 93 n-~l~~~~~~~~~~l~~L~~L~L~~------------------------------------------------------- 116 (251)
T 3m19_A 93 N-QLASLPLGVFDHLTQLDKLYLGG------------------------------------------------------- 116 (251)
T ss_dssp S-CCCCCCTTTTTTCTTCCEEECCS-------------------------------------------------------
T ss_pred C-cccccChhHhcccCCCCEEEcCC-------------------------------------------------------
Confidence 8 4445543 345555555554432
Q ss_pred EEEEEcCCcccccCcCchhhccHHHHhhcCCCCCCCCeEEEeecCCCCCCCc-hhhcCCCCcEEEEeCcCCCCcCCC-CC
Q 001998 750 LELRFDKEEAATEGINEENEINHQAISEALRPPPDLEALEIMHYKGQTAFPS-WIVSLNKLKKLKLSSCCKCEIMPP-LG 827 (984)
Q Consensus 750 L~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~lp~-~l~~l~~L~~L~L~~~~~~~~l~~-l~ 827 (984)
|.+... ....+..+++|++|++++|.+.. +|. .+..+++|+.|+|++|......+. +.
T Consensus 117 -----N~l~~~--------------~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 176 (251)
T 3m19_A 117 -----NQLKSL--------------PSGVFDRLTKLKELRLNTNQLQS-IPAGAFDKLTNLQTLSLSTNQLQSVPHGAFD 176 (251)
T ss_dssp -----SCCCCC--------------CTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred -----CcCCCc--------------ChhHhccCCcccEEECcCCcCCc-cCHHHcCcCcCCCEEECCCCcCCccCHHHHh
Confidence 222111 01224556788888888888877 554 677889999999999977665543 88
Q ss_pred CCCCcceeeecccc
Q 001998 828 ALPSLEILQIQRME 841 (984)
Q Consensus 828 ~Lp~L~~L~L~~~~ 841 (984)
.+++|+.|++++|+
T Consensus 177 ~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 177 RLGKLQTITLFGNQ 190 (251)
T ss_dssp TCTTCCEEECCSCC
T ss_pred CCCCCCEEEeeCCc
Confidence 89999999998876
No 105
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.44 E-value=1.1e-13 Score=163.12 Aligned_cols=182 Identities=20% Similarity=0.212 Sum_probs=145.3
Q ss_pred cCCCCccccCcccccccCccceEEecCCCccccchhhccCCcccEEecccccccccccccccCCCCCCeEEeccCCCccc
Q 001998 597 DGGENTVHDIPREIEKLIHLRSLRLAGLKIEELPETCCKLFNLQTLDINECYRLKRLPQGVGSLVNLRHLVVSLNGDLDY 676 (984)
Q Consensus 597 ~l~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~ 676 (984)
.+..+.+..++. +..|.+|++|++++|.|..+| .+..|++|++|+|++|. +..+|. +..|++|++|++++| .+..
T Consensus 27 ~l~~~~i~~~~~-~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N-~l~~ 101 (605)
T 1m9s_A 27 NLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNK-LTDIKP-LTNLKNLGWLFLDEN-KIKD 101 (605)
T ss_dssp HTTCSCTTSEEC-HHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSC-CCCCGG-GGGCTTCCEEECCSS-CCCC
T ss_pred hccCCCcccccc-hhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCC-CCCChh-hccCCCCCEEECcCC-CCCC
Confidence 666666665543 678999999999999999997 68999999999999998 888887 999999999999999 5666
Q ss_pred CCccCCCCCCCCcCCceEecCCCCcccccccccccccccccCCCeeEEcCCCCCCChhhhhHhcccCCCCCCeEEEEEcC
Q 001998 677 LPKGVERLTSLRTLREFVVSSTGGKYCTKACKVEGLRQLNHLRGTLRIRGLGNVTDVEEAEKADLEKKKNIVGLELRFDK 756 (984)
Q Consensus 677 ~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~ 756 (984)
+| .+..+++|+.|++..+.... + ..+..+++|+.|+|+.|.
T Consensus 102 l~-~l~~l~~L~~L~Ls~N~l~~---------------------------------l-----~~l~~l~~L~~L~Ls~N~ 142 (605)
T 1m9s_A 102 LS-SLKDLKKLKSLSLEHNGISD---------------------------------I-----NGLVHLPQLESLYLGNNK 142 (605)
T ss_dssp CT-TSTTCTTCCEEECTTSCCCC---------------------------------C-----GGGGGCTTCSEEECCSSC
T ss_pred Ch-hhccCCCCCEEEecCCCCCC---------------------------------C-----ccccCCCccCEEECCCCc
Confidence 65 68888888888765432211 0 124456788888888776
Q ss_pred CcccccCcCchhhccHHHHhhcCCCCCCCCeEEEeecCCCCCCCchhhcCCCCcEEEEeCcCCCCcCCCCCCCCCcceee
Q 001998 757 EEAATEGINEENEINHQAISEALRPPPDLEALEIMHYKGQTAFPSWIVSLNKLKKLKLSSCCKCEIMPPLGALPSLEILQ 836 (984)
Q Consensus 757 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~l~~l~~Lp~L~~L~ 836 (984)
+... ..+..+++|+.|+|++|.+.. ++. +..+++|+.|+|++|... .++.+..|++|+.|+
T Consensus 143 l~~l----------------~~l~~l~~L~~L~Ls~N~l~~-~~~-l~~l~~L~~L~Ls~N~i~-~l~~l~~l~~L~~L~ 203 (605)
T 1m9s_A 143 ITDI----------------TVLSRLTKLDTLSLEDNQISD-IVP-LAGLTKLQNLYLSKNHIS-DLRALAGLKNLDVLE 203 (605)
T ss_dssp CCCC----------------GGGGSCTTCSEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCC-BCGGGTTCTTCSEEE
T ss_pred cCCc----------------hhhcccCCCCEEECcCCcCCC-chh-hccCCCCCEEECcCCCCC-CChHHccCCCCCEEE
Confidence 5321 346678899999999999887 655 889999999999999655 457799999999999
Q ss_pred ecccc
Q 001998 837 IQRME 841 (984)
Q Consensus 837 L~~~~ 841 (984)
|++|.
T Consensus 204 L~~N~ 208 (605)
T 1m9s_A 204 LFSQE 208 (605)
T ss_dssp CCSEE
T ss_pred ccCCc
Confidence 99886
No 106
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.42 E-value=2.9e-13 Score=145.25 Aligned_cols=160 Identities=22% Similarity=0.240 Sum_probs=114.4
Q ss_pred cCCCCccccCcccccccCccceEEecCCCccccchhhccCCcccEEecccccccccccccccCCCCCCeEEeccCCCccc
Q 001998 597 DGGENTVHDIPREIEKLIHLRSLRLAGLKIEELPETCCKLFNLQTLDINECYRLKRLPQGVGSLVNLRHLVVSLNGDLDY 676 (984)
Q Consensus 597 ~l~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~ 676 (984)
.+..+.+..+. .+..+.+|++|++++|.+..+| .+..+++|++|++++|. +..+|. +.++++|++|++++| .+..
T Consensus 30 ~l~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~-l~~~~~-l~~l~~L~~L~l~~n-~l~~ 104 (291)
T 1h6t_A 30 NLKKKSVTDAV-TQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNK-LTDIKP-LANLKNLGWLFLDEN-KVKD 104 (291)
T ss_dssp HTTCSCTTSEE-CHHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSS-CCCC
T ss_pred HhcCCCccccc-chhhcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCc-cCCCcc-cccCCCCCEEECCCC-cCCC
Confidence 45555544433 2567888899999988888886 47888889999998887 777777 888888888888887 4444
Q ss_pred CCccCCCCCCCCcCCceEecCCCCcccccccccccccccccCCCeeEEcCCCCCCChhhhhHhcccCCCCCCeEEEEEcC
Q 001998 677 LPKGVERLTSLRTLREFVVSSTGGKYCTKACKVEGLRQLNHLRGTLRIRGLGNVTDVEEAEKADLEKKKNIVGLELRFDK 756 (984)
Q Consensus 677 ~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~ 756 (984)
+| .+..+++|+.|++.. |.
T Consensus 105 ~~-~l~~l~~L~~L~L~~------------------------------------------------------------n~ 123 (291)
T 1h6t_A 105 LS-SLKDLKKLKSLSLEH------------------------------------------------------------NG 123 (291)
T ss_dssp GG-GGTTCTTCCEEECTT------------------------------------------------------------SC
T ss_pred Ch-hhccCCCCCEEECCC------------------------------------------------------------Cc
Confidence 43 255555555554322 11
Q ss_pred CcccccCcCchhhccHHHHhhcCCCCCCCCeEEEeecCCCCCCCchhhcCCCCcEEEEeCcCCCCcCCCCCCCCCcceee
Q 001998 757 EEAATEGINEENEINHQAISEALRPPPDLEALEIMHYKGQTAFPSWIVSLNKLKKLKLSSCCKCEIMPPLGALPSLEILQ 836 (984)
Q Consensus 757 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~l~~l~~Lp~L~~L~ 836 (984)
... ...+..+++|++|++++|.+.. + ..+..+++|+.|++++|..... +.+..+++|+.|+
T Consensus 124 i~~----------------~~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~N~l~~~-~~l~~l~~L~~L~ 184 (291)
T 1h6t_A 124 ISD----------------INGLVHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLY 184 (291)
T ss_dssp CCC----------------CGGGGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCC-GGGTTCTTCCEEE
T ss_pred CCC----------------ChhhcCCCCCCEEEccCCcCCc-c-hhhccCCCCCEEEccCCccccc-hhhcCCCccCEEE
Confidence 110 0123345688888888888877 5 5788999999999999976554 3489999999999
Q ss_pred ecccc
Q 001998 837 IQRME 841 (984)
Q Consensus 837 L~~~~ 841 (984)
+++|.
T Consensus 185 L~~N~ 189 (291)
T 1h6t_A 185 LSKNH 189 (291)
T ss_dssp CCSSC
T ss_pred CCCCc
Confidence 99875
No 107
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.39 E-value=6.1e-13 Score=133.81 Aligned_cols=153 Identities=18% Similarity=0.175 Sum_probs=110.6
Q ss_pred ccccCccceEEecCCCccccchhhccCCcccEEecccccccccccccccCCCCCCeEEeccCCCcccCCccCCCCCCCCc
Q 001998 610 IEKLIHLRSLRLAGLKIEELPETCCKLFNLQTLDINECYRLKRLPQGVGSLVNLRHLVVSLNGDLDYLPKGVERLTSLRT 689 (984)
Q Consensus 610 i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~ 689 (984)
.+++.+|++|++++|.+..+| .+..+++|++|++++|. +..+| .+..+++|++|++++|......|..++.+++|+.
T Consensus 40 ~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~-~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIH-ATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCC-CSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCC-CCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 477889999999999999888 78899999999999985 76665 5888999999999988443334555666666666
Q ss_pred CCceEecCCCCcccccccccccccccccCCCeeEEcCCCCCCChhhhhHhcccCCCCCCeEEEEEcCCcccccCcCchhh
Q 001998 690 LREFVVSSTGGKYCTKACKVEGLRQLNHLRGTLRIRGLGNVTDVEEAEKADLEKKKNIVGLELRFDKEEAATEGINEENE 769 (984)
Q Consensus 690 L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~ 769 (984)
|++.. |....
T Consensus 117 L~Ls~------------------------------------------------------------n~i~~---------- 126 (197)
T 4ezg_A 117 LDISH------------------------------------------------------------SAHDD---------- 126 (197)
T ss_dssp EECCS------------------------------------------------------------SBCBG----------
T ss_pred EEecC------------------------------------------------------------CccCc----------
Confidence 54432 22111
Q ss_pred ccHHHHhhcCCCCCCCCeEEEeecCCCCCCCchhhcCCCCcEEEEeCcCCCCcCCCCCCCCCcceeeecccc
Q 001998 770 INHQAISEALRPPPDLEALEIMHYKGQTAFPSWIVSLNKLKKLKLSSCCKCEIMPPLGALPSLEILQIQRME 841 (984)
Q Consensus 770 ~~~~~~~~~l~~~~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~l~~l~~Lp~L~~L~L~~~~ 841 (984)
..+..+..+++|++|++++|...+.+| .+..+++|+.|++++|.... ++.+..+++|++|++++|.
T Consensus 127 ----~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 127 ----SILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YRGIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp ----GGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CTTGGGCSSCCEEEECBC-
T ss_pred ----HhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hHHhccCCCCCEEEeeCcc
Confidence 012334556788888888887333366 57788889999998886544 5577888899999988775
No 108
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.37 E-value=5.7e-11 Score=133.29 Aligned_cols=297 Identities=13% Similarity=0.039 Sum_probs=179.5
Q ss_pred CCcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccc----cC--CCeEEEEEecCCC-C
Q 001998 178 VSEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVI----NN--FEIRVWVCVSDPF-D 250 (984)
Q Consensus 178 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~--F~~~~wv~~s~~~-~ 250 (984)
+..++||+.+++++..++..... ....+.+.|+|++|+||||||+.+++...-. .. ....+|+++.... +
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~---~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 95 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVK---NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGT 95 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHT---TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSC
T ss_pred CCCCCChHHHHHHHHHHHHHHHc---CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCC
Confidence 37899999999999988864211 1234589999999999999999999842111 11 3456788877767 8
Q ss_pred HHHHHHHHHHHhcCCCCC--cccHHHHHHHHHHHhCCCceEEEEEcCCCCCcCChhhH-HHhhcCCCCCcEEEEEccchH
Q 001998 251 EFSVAKAIIEELEGSATD--LHELNSLLRRIGANIAGQKFFMVLDNLWTDDYRKWEPF-RNCLMNGLRGSKILLTTRKET 327 (984)
Q Consensus 251 ~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l-~~~l~~~~~gs~iiiTtr~~~ 327 (984)
...++..++.++.+.... ......+...+.+.+..++.+|||||++.-....+... ...+.....+..||+||+...
T Consensus 96 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~ 175 (384)
T 2qby_B 96 PQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDIN 175 (384)
T ss_dssp HHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTT
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCc
Confidence 889999999988433211 22335566777777777777999999965322222222 333333226788999998753
Q ss_pred HH----hhc-CC-CCeEeCCCCChHhHHHHHHHHhcC-CCCCCCchhHHHHHHHHHHhcC---CChH-HHHHHHHhh--c
Q 001998 328 VA----RMM-ES-TDIVYVQGLSEPECWSLFRRFAFS-GRTPLECDQLEEIGRGIVRKCK---GLPL-AAKTIGSLL--Q 394 (984)
Q Consensus 328 v~----~~~-~~-~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~l~~~~~~i~~~~~---GlPL-ai~~~~~~l--~ 394 (984)
.. ..+ .. ...+.+.+++.++..++|...+.. -...... .+..+.|++.++ |.|. |+..+-.+. .
T Consensus 176 ~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a 252 (384)
T 2qby_B 176 VRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYD---DEILSYIAAISAKEHGDARKAVNLLFRAAQLA 252 (384)
T ss_dssp TTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCC---SHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred hHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcC---HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHh
Confidence 21 111 11 238999999999999999987531 1111112 233455777777 8887 444433322 2
Q ss_pred c---CCCHHHHHHHHhhhhhhhhhhcccccchhhccccCCChhhhhhhhhcccCCCCCccChHHHHHHHHHcCCcCCCCC
Q 001998 395 F---KRTKEEWQSVLDSEMWQLEEFERGLSAPLFLSYNDLPFEIKRCFSYCAIFPKGSSLKKDELVKLWMAQGYIVPKGN 471 (984)
Q Consensus 395 ~---~~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl~~~~fp~~~~i~~~~li~~Wiaeg~i~~~~~ 471 (984)
. .-+.+.+..++..... ..+.-+++.|+.+.+..+.-++....+-.+. +......-..| +.+
T Consensus 253 ~~~~~i~~~~v~~~~~~~~~----------~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~-~~~~~~~~~~g-~~~--- 317 (384)
T 2qby_B 253 SGGGIIRKEHVDKAIVDYEQ----------ERLIEAVKALPFHYKLALRSLIESEDVMSAH-KMYTDLCNKFK-QKP--- 317 (384)
T ss_dssp TSSSCCCHHHHHHHHHHHHH----------HHHHHHHHSSCHHHHHHHHHHHTCCBHHHHH-HHHHHHHHHTT-CCC---
T ss_pred cCCCccCHHHHHHHHHHHhc----------chHHHHHHcCCHHHHHHHHHHHHhcccChHH-HHHHHHHHHcC-CCC---
Confidence 1 2356777777654321 2345567788887777666566511100110 11111111223 111
Q ss_pred chHHHhHHHHHHHHhhcccccceec
Q 001998 472 KEMEVIGLEYFDCLASRSFYQQFVK 496 (984)
Q Consensus 472 ~~~e~~~~~~~~~L~~r~l~~~~~~ 496 (984)
........++..|..++++.....
T Consensus 318 -~~~~~~~~~l~~L~~~gli~~~~~ 341 (384)
T 2qby_B 318 -LSYRRFSDIISELDMFGIVKIRII 341 (384)
T ss_dssp -CCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred -CCHHHHHHHHHHHHhCCCEEEEec
Confidence 122455678999999999976543
No 109
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.37 E-value=1.5e-12 Score=151.49 Aligned_cols=173 Identities=18% Similarity=0.206 Sum_probs=117.3
Q ss_pred ccee-cCCCCccccCcccccccCccceEEecCCCccccchhhccCCcccEEecccccccccccccccCCCCCCeEEeccC
Q 001998 593 YGED-DGGENTVHDIPREIEKLIHLRSLRLAGLKIEELPETCCKLFNLQTLDINECYRLKRLPQGVGSLVNLRHLVVSLN 671 (984)
Q Consensus 593 ~Lrv-~l~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~ 671 (984)
.|+. ++++|.+..+|..+. ++|++|+|++|.|+.+| ..+++|++|++++|. ++.+|. +.+ +|++|++++|
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~-l~~ip~-l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNR-LSTLPE-LPA--SLKHLDVDNN 130 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSC-CSCCCC-CCT--TCCEEECCSS
T ss_pred CccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCC-CCCcch-hhc--CCCEEECCCC
Confidence 6667 888888888887664 78888888888888888 457888888888886 777887 655 8888888887
Q ss_pred CCcccCCccCCCCCCCCcCCceEecCCCCcccccccccccccccccCCCeeEEcCCCCCCChhhhhHhcccCCCCCCeEE
Q 001998 672 GDLDYLPKGVERLTSLRTLREFVVSSTGGKYCTKACKVEGLRQLNHLRGTLRIRGLGNVTDVEEAEKADLEKKKNIVGLE 751 (984)
Q Consensus 672 ~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~ 751 (984)
.+..+|. .+++|+.|++..+.... + +. .+++|+.|+
T Consensus 131 -~l~~lp~---~l~~L~~L~Ls~N~l~~------------l------------------p~----------~l~~L~~L~ 166 (571)
T 3cvr_A 131 -QLTMLPE---LPALLEYINADNNQLTM------------L------------------PE----------LPTSLEVLS 166 (571)
T ss_dssp -CCSCCCC---CCTTCCEEECCSSCCSC------------C------------------CC----------CCTTCCEEE
T ss_pred -cCCCCCC---cCccccEEeCCCCccCc------------C------------------CC----------cCCCcCEEE
Confidence 5566766 56777777664432211 0 00 234667777
Q ss_pred EEEcCCcccccCcCchhhccHHHHhhcCCCCCCCCeEEEeecCCCCCCCchhhcCCCC-------cEEEEeCcCCCCcCC
Q 001998 752 LRFDKEEAATEGINEENEINHQAISEALRPPPDLEALEIMHYKGQTAFPSWIVSLNKL-------KKLKLSSCCKCEIMP 824 (984)
Q Consensus 752 L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~lp~~l~~l~~L-------~~L~L~~~~~~~~l~ 824 (984)
|++|.+... +. +. ++|+.|+|++|.+.. +|. +.. +| +.|+|++|.... +|
T Consensus 167 Ls~N~L~~l---------------p~-l~--~~L~~L~Ls~N~L~~-lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~-lp 223 (571)
T 3cvr_A 167 VRNNQLTFL---------------PE-LP--ESLEALDVSTNLLES-LPA-VPV--RNHHSEETEIFFRCRENRITH-IP 223 (571)
T ss_dssp CCSSCCSCC---------------CC-CC--TTCCEEECCSSCCSS-CCC-CC----------CCEEEECCSSCCCC-CC
T ss_pred CCCCCCCCc---------------ch-hh--CCCCEEECcCCCCCc-hhh-HHH--hhhcccccceEEecCCCccee-cC
Confidence 776655322 22 22 678888888887775 777 443 56 888888876554 44
Q ss_pred C-CCCCCCcceeeecccc
Q 001998 825 P-LGALPSLEILQIQRME 841 (984)
Q Consensus 825 ~-l~~Lp~L~~L~L~~~~ 841 (984)
. +..+++|+.|+|++|.
T Consensus 224 ~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 224 ENILSLDPTCTIILEDNP 241 (571)
T ss_dssp GGGGGSCTTEEEECCSSS
T ss_pred HHHhcCCCCCEEEeeCCc
Confidence 4 6668888888888776
No 110
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.36 E-value=1.8e-14 Score=160.23 Aligned_cols=89 Identities=13% Similarity=0.168 Sum_probs=53.0
Q ss_pred hhHHhhhccccccee-cCCCCccccCc-----ccccccC-ccceEEecCCCcccc-chhhccC-----CcccEEeccccc
Q 001998 582 PVLKGLFDHLTYGED-DGGENTVHDIP-----REIEKLI-HLRSLRLAGLKIEEL-PETCCKL-----FNLQTLDINECY 648 (984)
Q Consensus 582 ~~~~~~~~~l~~Lrv-~l~~~~i~~lp-----~~i~~L~-~Lr~L~L~~~~i~~l-p~~i~~L-----~~L~~L~L~~~~ 648 (984)
...+.++...+.|+. ++++|.+...+ ..+.+++ +|++|+|++|.++.. +..+..+ ++|++|+|++|.
T Consensus 12 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~ 91 (362)
T 3goz_A 12 NPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF 91 (362)
T ss_dssp CHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC
T ss_pred HHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc
Confidence 334555555555666 77777766654 4556666 677777777776643 4445443 677777777766
Q ss_pred cccccc-cc----ccCC-CCCCeEEeccC
Q 001998 649 RLKRLP-QG----VGSL-VNLRHLVVSLN 671 (984)
Q Consensus 649 ~l~~lP-~~----i~~L-~~L~~L~l~~~ 671 (984)
++..+ .. +..+ ++|++|++++|
T Consensus 92 -l~~~~~~~l~~~l~~~~~~L~~L~Ls~N 119 (362)
T 3goz_A 92 -LSYKSSDELVKTLAAIPFTITVLDLGWN 119 (362)
T ss_dssp -GGGSCHHHHHHHHHTSCTTCCEEECCSS
T ss_pred -CChHHHHHHHHHHHhCCCCccEEECcCC
Confidence 44332 22 3333 66777777666
No 111
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.35 E-value=4.5e-11 Score=134.36 Aligned_cols=295 Identities=13% Similarity=0.049 Sum_probs=178.6
Q ss_pred CCcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccc----cCCCeEEEEEecCCCCHHH
Q 001998 178 VSEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVI----NNFEIRVWVCVSDPFDEFS 253 (984)
Q Consensus 178 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~~s~~~~~~~ 253 (984)
+..++||+.+++++..++...-. ....+.+.|+|++|+||||+|+.+++..... +.-...+|+++....+...
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~---~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 94 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALR---GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYR 94 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTS---SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHc---CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHH
Confidence 47899999999999998854311 1235578899999999999999999742111 0023467888888889999
Q ss_pred HHHHHHHHhcCCCCC-cccHHHHHHHHHHHh--CCCceEEEEEcCCCCCcC--ChhhHHHhhcC--C---CCCcEEEEEc
Q 001998 254 VAKAIIEELEGSATD-LHELNSLLRRIGANI--AGQKFFMVLDNLWTDDYR--KWEPFRNCLMN--G---LRGSKILLTT 323 (984)
Q Consensus 254 ~~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l--~~kr~LlVlDdvw~~~~~--~~~~l~~~l~~--~---~~gs~iiiTt 323 (984)
++..++.+++..... ......+...+.+.+ .+++.+|||||++.-... ..+.+...+.. . ..+..+|.||
T Consensus 95 ~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t 174 (387)
T 2v1u_A 95 VASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGIT 174 (387)
T ss_dssp HHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEEC
T ss_pred HHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEE
Confidence 999999999654222 233555566666666 456889999999653221 12223332321 1 4456788888
Q ss_pred cchHH--------HhhcCCCCeEeCCCCChHhHHHHHHHHhcC--CCCCCCchhHHHHHHHHHHhcC---CChH-HHHHH
Q 001998 324 RKETV--------ARMMESTDIVYVQGLSEPECWSLFRRFAFS--GRTPLECDQLEEIGRGIVRKCK---GLPL-AAKTI 389 (984)
Q Consensus 324 r~~~v--------~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~--~~~~~~~~~l~~~~~~i~~~~~---GlPL-ai~~~ 389 (984)
+.... ...+. ...+.+.+++.++..+++...+.. ...... + +..+.|++.++ |.|- ++..+
T Consensus 175 ~~~~~~~~l~~~l~~r~~-~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~-~---~~~~~l~~~~~~~~G~~r~~~~~l 249 (387)
T 2v1u_A 175 NSLGFVENLEPRVKSSLG-EVELVFPPYTAPQLRDILETRAEEAFNPGVLD-P---DVVPLCAALAAREHGDARRALDLL 249 (387)
T ss_dssp SCSTTSSSSCHHHHTTTT-SEECCBCCCCHHHHHHHHHHHHHHHBCTTTBC-S---SHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred CCCchHhhhCHHHHhcCC-CeEEeeCCCCHHHHHHHHHHHHHhhccCCCCC-H---HHHHHHHHHHHHhccCHHHHHHHH
Confidence 76532 22211 147889999999999999887431 111112 2 23445777777 9994 33333
Q ss_pred HHhhc-----c--CCCHHHHHHHHhhhhhhhhhhcccccchhhccccCCChhhhhhhhhcc-cCCCCCccChHHHHHHH-
Q 001998 390 GSLLQ-----F--KRTKEEWQSVLDSEMWQLEEFERGLSAPLFLSYNDLPFEIKRCFSYCA-IFPKGSSLKKDELVKLW- 460 (984)
Q Consensus 390 ~~~l~-----~--~~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl~~~-~fp~~~~i~~~~li~~W- 460 (984)
..+.. . .-+.+.+..++..... ..+.-++..||.+.+..+..++ ++-....+....+.+..
T Consensus 250 ~~a~~~a~~~~~~~i~~~~v~~a~~~~~~----------~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~ 319 (387)
T 2v1u_A 250 RVAGEIAERRREERVRREHVYSARAEIER----------DRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYK 319 (387)
T ss_dssp HHHHHHHHHTTCSCBCHHHHHHHHHHHHH----------HHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcCHHHHHHHHHHHhh----------chHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHH
Confidence 32221 1 1256667666654321 1244467788888777666555 33322245445333332
Q ss_pred ---HHcCCcCCCCCchHHHhHHHHHHHHhhccccccee
Q 001998 461 ---MAQGYIVPKGNKEMEVIGLEYFDCLASRSFYQQFV 495 (984)
Q Consensus 461 ---iaeg~i~~~~~~~~e~~~~~~~~~L~~r~l~~~~~ 495 (984)
-..| +.+ ........+++.|...+++....
T Consensus 320 ~~~~~~~-~~~----~~~~~~~~~l~~L~~~gli~~~~ 352 (387)
T 2v1u_A 320 ELTSTLG-LEH----VTLRRVSGIISELDMLGIVKSRV 352 (387)
T ss_dssp HHHHHTT-CCC----CCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHhcC-CCC----CCHHHHHHHHHHHHhCCCeEEEe
Confidence 2223 111 12356678999999999998654
No 112
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.34 E-value=1.5e-12 Score=151.55 Aligned_cols=41 Identities=12% Similarity=0.010 Sum_probs=32.7
Q ss_pred CCCCeEEEeecCCCCCCCchhhcCCCCcEEEEeCcCCCCcCC
Q 001998 783 PDLEALEIMHYKGQTAFPSWIVSLNKLKKLKLSSCCKCEIMP 824 (984)
Q Consensus 783 ~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~l~ 824 (984)
+.|+.|+|++|.+.. +|.++..+++|+.|+|++|.....+|
T Consensus 207 ~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 207 ETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp -CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred ccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence 345889999988887 89888889999999999987765444
No 113
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.33 E-value=1.6e-10 Score=129.94 Aligned_cols=321 Identities=11% Similarity=0.024 Sum_probs=192.0
Q ss_pred CCcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccC-CCeEEEEEecCCCCHHHHHH
Q 001998 178 VSEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINN-FEIRVWVCVSDPFDEFSVAK 256 (984)
Q Consensus 178 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~~~wv~~s~~~~~~~~~~ 256 (984)
+..++||+.+++++..++.....+ .....+.+.|+|.+|+||||||+.+++. .... -...+|+.++...+...++.
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~~-~~~~~~~~li~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~i~~~~~~~~~~~~~ 92 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLRN-PGHHYPRATLLGRPGTGKTVTLRKLWEL--YKDKTTARFVYINGFIYRNFTAIIG 92 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHHS-TTSSCCEEEEECCTTSSHHHHHHHHHHH--HTTSCCCEEEEEETTTCCSHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcC-CCCCCCeEEEECCCCCCHHHHHHHHHHH--HhhhcCeeEEEEeCccCCCHHHHHH
Confidence 368999999999999988652100 0112347899999999999999999973 3332 13567888888888899999
Q ss_pred HHHHHhcCCCCC-cccHHHHHHHHHHHhC--CCceEEEEEcCCCCCcCChhhHHHhhcCC-C---CCcEEEEEccchHHH
Q 001998 257 AIIEELEGSATD-LHELNSLLRRIGANIA--GQKFFMVLDNLWTDDYRKWEPFRNCLMNG-L---RGSKILLTTRKETVA 329 (984)
Q Consensus 257 ~i~~~l~~~~~~-~~~~~~~~~~l~~~l~--~kr~LlVlDdvw~~~~~~~~~l~~~l~~~-~---~gs~iiiTtr~~~v~ 329 (984)
.++..++..... ......+...+.+.+. +++.+||||+++.-+......+...+... . .+..||+||+.....
T Consensus 93 ~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~ 172 (389)
T 1fnn_A 93 EIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVL 172 (389)
T ss_dssp HHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHH
T ss_pred HHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHH
Confidence 999988653221 2234555555555553 66889999999765433444454444321 1 467888888876443
Q ss_pred hhcC-------CCCeEeCCCCChHhHHHHHHHHhcCCC-CCCCchhHHHHHHHHHHhc---------CCChHHHHHHHHh
Q 001998 330 RMME-------STDIVYVQGLSEPECWSLFRRFAFSGR-TPLECDQLEEIGRGIVRKC---------KGLPLAAKTIGSL 392 (984)
Q Consensus 330 ~~~~-------~~~~~~l~~L~~~~~~~lf~~~~~~~~-~~~~~~~l~~~~~~i~~~~---------~GlPLai~~~~~~ 392 (984)
..+. ....+.+.+++.++..+++...+.... .... -.+..+.|++.+ +|.|-.+..+...
T Consensus 173 ~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~ 249 (389)
T 1fnn_A 173 NNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSY---SEDILQMIADITGAQTPLDTNRGDARLAIDILYR 249 (389)
T ss_dssp HTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSS---CHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHH
T ss_pred HHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCC---CHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHH
Confidence 3221 123699999999999999988753210 1111 134566788888 7887554443322
Q ss_pred -h--c---cC--CCHHHHHHHHhhhhhhhhhhcccccchhhccccCCChhhhhhhhhcccCC---CCCccChHHHHHHHH
Q 001998 393 -L--Q---FK--RTKEEWQSVLDSEMWQLEEFERGLSAPLFLSYNDLPFEIKRCFSYCAIFP---KGSSLKKDELVKLWM 461 (984)
Q Consensus 393 -l--~---~~--~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl~~~~fp---~~~~i~~~~li~~Wi 461 (984)
. . .. -+.+....+.... ....+.-.+..||.+.+.++..++.+. .+-.+....+...+-
T Consensus 250 a~~~a~~~~~~~i~~~~v~~~~~~~----------~~~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~ 319 (389)
T 1fnn_A 250 SAYAAQQNGRKHIAPEDVRKSSKEV----------LFGISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYK 319 (389)
T ss_dssp HHHHHHHTTCSSCCHHHHHHHHHHH----------SCCCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHH
T ss_pred HHHHHHHhCCCCcCHHHHHHHHHHH----------hhhhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHH
Confidence 1 1 11 1233333332211 122334446678888888777777554 222456666665543
Q ss_pred H----cCCcCCCCCchHHHhHHHHHHHHhhcccccceec----CCCCceeeEE----echHHHHHHHHhh
Q 001998 462 A----QGYIVPKGNKEMEVIGLEYFDCLASRSFYQQFVK----DDDNMVIGCT----MHDVVHDFAQFLT 519 (984)
Q Consensus 462 a----eg~i~~~~~~~~e~~~~~~~~~L~~r~l~~~~~~----~~~~~~~~~~----~Hdlv~~~~~~~~ 519 (984)
. .|... .+ ......++++|...+++..... ...|....++ .|+++..+...+.
T Consensus 320 ~~~~~~~~~~----~~-~~~~~~~l~~L~~~gli~~~~~~~~~g~~g~~~~~~l~~~~~~v~~~~~~~~~ 384 (389)
T 1fnn_A 320 IVCEEYGERP----RV-HSQLWSYLNDLREKGIVETRQNKRGEGVRGRTTLISIGTEPLDTLEAVITKLI 384 (389)
T ss_dssp HHHHHTTCCC----CC-HHHHHHHHHHHHHTTSSEEEEC---------CEEEECCSSCHHHHHHHHHHHH
T ss_pred HHHHHcCCCC----CC-HHHHHHHHHHHHhCCCeEEeeeccCCCCCCceeEEEeCCCHHHHHHHHHHHHH
Confidence 3 23111 11 2345678999999999987543 1223322222 4566665555443
No 114
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.32 E-value=2.5e-13 Score=150.96 Aligned_cols=233 Identities=12% Similarity=0.067 Sum_probs=155.8
Q ss_pred ccCCCceeEEeccCCCcchhhhHH----hhhcccc-ccee-cCCCCccccC-ccccccc-----CccceEEecCCCcccc
Q 001998 562 IFNAKKLRSLLIHSPLEVLSPVLK----GLFDHLT-YGED-DGGENTVHDI-PREIEKL-----IHLRSLRLAGLKIEEL 629 (984)
Q Consensus 562 ~~~~~~Lr~L~l~~~~~~~~~~~~----~~~~~l~-~Lrv-~l~~~~i~~l-p~~i~~L-----~~Lr~L~L~~~~i~~l 629 (984)
+...++|+.|++.+|. +..... ..|..++ .|+. ++++|.+... +..+..+ .+|++|+|++|.++..
T Consensus 18 ~~~~~~L~~L~Ls~n~--l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~ 95 (362)
T 3goz_A 18 TSIPHGVTSLDLSLNN--LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYK 95 (362)
T ss_dssp HTSCTTCCEEECTTSC--GGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS
T ss_pred HhCCCCceEEEccCCC--CChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChH
Confidence 3444569999999997 332222 5677787 8999 9999998775 5566665 9999999999999855
Q ss_pred ch-h----hccC-CcccEEecccccccccccc-c----ccC-CCCCCeEEeccCCCcc-----cCCccCCCCC-CCCcCC
Q 001998 630 PE-T----CCKL-FNLQTLDINECYRLKRLPQ-G----VGS-LVNLRHLVVSLNGDLD-----YLPKGVERLT-SLRTLR 691 (984)
Q Consensus 630 p~-~----i~~L-~~L~~L~L~~~~~l~~lP~-~----i~~-L~~L~~L~l~~~~~l~-----~~p~~i~~l~-~L~~L~ 691 (984)
+. . +..+ ++|++|++++|. ++..+. . +.. .++|++|++++|. +. .++..+..++ +|+.|+
T Consensus 96 ~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~ 173 (362)
T 3goz_A 96 SSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGND-LGIKSSDELIQILAAIPANVNSLN 173 (362)
T ss_dssp CHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEE
T ss_pred HHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCc-CCHHHHHHHHHHHhcCCccccEee
Confidence 43 3 4455 899999999998 665543 2 334 3699999999983 33 2223334444 666665
Q ss_pred ceEecCCCCcccccccccccccccccCCCeeEEcCCCCCCChhhhhHhcccCC-CCCCeEEEEEcCCcccccCcCchhhc
Q 001998 692 EFVVSSTGGKYCTKACKVEGLRQLNHLRGTLRIRGLGNVTDVEEAEKADLEKK-KNIVGLELRFDKEEAATEGINEENEI 770 (984)
Q Consensus 692 ~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~~-~~L~~L~L~~~~~~~~~~~~~~~~~~ 770 (984)
+..+.... .........+..+ ++|+.|+|++|.....
T Consensus 174 Ls~n~l~~--------------------------------~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~---------- 211 (362)
T 3goz_A 174 LRGNNLAS--------------------------------KNCAELAKFLASIPASVTSLDLSANLLGLK---------- 211 (362)
T ss_dssp CTTSCGGG--------------------------------SCHHHHHHHHHTSCTTCCEEECTTSCGGGS----------
T ss_pred ecCCCCch--------------------------------hhHHHHHHHHHhCCCCCCEEECCCCCCChh----------
Confidence 54322111 0011122234455 4899999998876432
Q ss_pred cHHHHhhcCCC-CCCCCeEEEeecCCCCCCCc-----hhhcCCCCcEEEEeCcCCCC-------cC-CCCCCCCCcceee
Q 001998 771 NHQAISEALRP-PPDLEALEIMHYKGQTAFPS-----WIVSLNKLKKLKLSSCCKCE-------IM-PPLGALPSLEILQ 836 (984)
Q Consensus 771 ~~~~~~~~l~~-~~~L~~L~L~~~~~~~~lp~-----~l~~l~~L~~L~L~~~~~~~-------~l-~~l~~Lp~L~~L~ 836 (984)
....++..+.. +++|++|+|++|.+.. .+. .+..+++|+.|+|++|.... .+ ..+..+++|+.|+
T Consensus 212 ~~~~l~~~l~~~~~~L~~L~Ls~N~l~~-~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~Ld 290 (362)
T 3goz_A 212 SYAELAYIFSSIPNHVVSLNLCLNCLHG-PSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVD 290 (362)
T ss_dssp CHHHHHHHHHHSCTTCCEEECCSSCCCC-CCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEEC
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCc-HHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEe
Confidence 12334444444 4689999999998876 332 33578999999999996221 11 2367888999999
Q ss_pred ecccc
Q 001998 837 IQRME 841 (984)
Q Consensus 837 L~~~~ 841 (984)
+++|.
T Consensus 291 L~~N~ 295 (362)
T 3goz_A 291 KNGKE 295 (362)
T ss_dssp TTSCB
T ss_pred cCCCc
Confidence 99886
No 115
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.31 E-value=4.1e-12 Score=127.74 Aligned_cols=148 Identities=16% Similarity=0.176 Sum_probs=121.6
Q ss_pred cccceeEEEEEecCcccccccccCCCceeEEeccCCCcchhhhHHhhhccccccee-cCCCCcccc-CcccccccCccce
Q 001998 541 SQDKLRHSILVLDKVASFPVSIFNAKKLRSLLIHSPLEVLSPVLKGLFDHLTYGED-DGGENTVHD-IPREIEKLIHLRS 618 (984)
Q Consensus 541 ~~~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lrv-~l~~~~i~~-lp~~i~~L~~Lr~ 618 (984)
...+++++.+..+.+..++ .+..+++|++|++.+|. +.. ++ .+..++.|+. ++++|.+.. .|..++++++|++
T Consensus 42 ~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~--~~~-~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIH--ATN-YN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCC--CSC-CG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCC--CCc-ch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 3457889999998888767 78889999999999985 222 22 4778889999 999999875 6788999999999
Q ss_pred EEecCCCccc-cchhhccCCcccEEecccccccccccccccCCCCCCeEEeccCCCcccCCccCCCCCCCCcCCceEec
Q 001998 619 LRLAGLKIEE-LPETCCKLFNLQTLDINECYRLKRLPQGVGSLVNLRHLVVSLNGDLDYLPKGVERLTSLRTLREFVVS 696 (984)
Q Consensus 619 L~L~~~~i~~-lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~ 696 (984)
|++++|.++. .|..++++++|++|++++|..+..+| .+..+++|++|++++| .+..++ .+..+++|+.|++..+.
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n-~i~~~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD-GVHDYR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB-CCCCCT-TGGGCSSCCEEEECBC-
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC-CCcChH-HhccCCCCCEEEeeCcc
Confidence 9999999884 77889999999999999997678887 5899999999999988 556666 68888888888876554
No 116
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.31 E-value=4.7e-12 Score=132.77 Aligned_cols=152 Identities=26% Similarity=0.341 Sum_probs=98.9
Q ss_pred ccceeEEEEEecCcccccc-cccCCCceeEEeccCCCcchhhhHHhhhccccccee-cCCCCccccCcc-cccccCccce
Q 001998 542 QDKLRHSILVLDKVASFPV-SIFNAKKLRSLLIHSPLEVLSPVLKGLFDHLTYGED-DGGENTVHDIPR-EIEKLIHLRS 618 (984)
Q Consensus 542 ~~~~r~l~l~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lrv-~l~~~~i~~lp~-~i~~L~~Lr~ 618 (984)
+..++.+.+..+.+..++. .+.++++|++|++.+|. +....+..|..++.|+. ++++|.+..+|. .+..+++|++
T Consensus 34 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 111 (251)
T 3m19_A 34 PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ--LQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDK 111 (251)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC--CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCc--CCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCE
Confidence 4566777777666655433 46667777777777765 33334455667777777 777777766653 4567777777
Q ss_pred EEecCCCccccchh-hccCCcccEEecccccccccccc-cccCCCCCCeEEeccCCCcccCCc-cCCCCCCCCcCCceEe
Q 001998 619 LRLAGLKIEELPET-CCKLFNLQTLDINECYRLKRLPQ-GVGSLVNLRHLVVSLNGDLDYLPK-GVERLTSLRTLREFVV 695 (984)
Q Consensus 619 L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lP~-~i~~L~~L~~L~l~~~~~l~~~p~-~i~~l~~L~~L~~~~~ 695 (984)
|+|++|.++.+|.. +.++++|++|+|++|. ++.+|. .+..+++|++|++++| .+..+|. .+..+++|+.|++..+
T Consensus 112 L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 112 LYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTN-QLQSVPHGAFDRLGKLQTITLFGN 189 (251)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSC
T ss_pred EEcCCCcCCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCC
Confidence 77777777766654 4667777777777776 666665 4667777777777777 3444443 4666777777766554
Q ss_pred cC
Q 001998 696 SS 697 (984)
Q Consensus 696 ~~ 697 (984)
..
T Consensus 190 ~~ 191 (251)
T 3m19_A 190 QF 191 (251)
T ss_dssp CB
T ss_pred ce
Confidence 43
No 117
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.31 E-value=1.6e-11 Score=125.61 Aligned_cols=78 Identities=23% Similarity=0.396 Sum_probs=59.3
Q ss_pred cCCCCccccCcccccccCccceEEecCCCccccch-hhccCCcccEEecccccccccc-cccccCCCCCCeEEeccCCCc
Q 001998 597 DGGENTVHDIPREIEKLIHLRSLRLAGLKIEELPE-TCCKLFNLQTLDINECYRLKRL-PQGVGSLVNLRHLVVSLNGDL 674 (984)
Q Consensus 597 ~l~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~l-P~~i~~L~~L~~L~l~~~~~l 674 (984)
+++++.+..+|..+. .+|++|+|++|.|+.+|. .+.++++|++|+|++|. +..+ |..+.++++|++|++++| .+
T Consensus 17 ~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N-~l 92 (220)
T 2v9t_B 17 DCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ-ISELAPDAFQGLRSLNSLVLYGN-KI 92 (220)
T ss_dssp ECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSC-CCEECTTTTTTCSSCCEEECCSS-CC
T ss_pred EcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCc-CCCcCHHHhhCCcCCCEEECCCC-cC
Confidence 777777888887665 678888888888887766 67888888888888887 5554 677888888888888877 44
Q ss_pred ccCC
Q 001998 675 DYLP 678 (984)
Q Consensus 675 ~~~p 678 (984)
..+|
T Consensus 93 ~~l~ 96 (220)
T 2v9t_B 93 TELP 96 (220)
T ss_dssp CCCC
T ss_pred CccC
Confidence 4444
No 118
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.30 E-value=2.1e-11 Score=125.56 Aligned_cols=144 Identities=26% Similarity=0.254 Sum_probs=98.9
Q ss_pred ecCCCCccccCcccccccCccceEEecCCCcccc-chhhccCCcccEEeccccccccccccc-ccCCCCCCeEEeccCCC
Q 001998 596 DDGGENTVHDIPREIEKLIHLRSLRLAGLKIEEL-PETCCKLFNLQTLDINECYRLKRLPQG-VGSLVNLRHLVVSLNGD 673 (984)
Q Consensus 596 v~l~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lP~~-i~~L~~L~~L~l~~~~~ 673 (984)
++++++.+..+|..+. .+|++|+|++|.|+.+ |..+.++++|++|+|++|. +..+|.. +..+++|++|++++| .
T Consensus 24 v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N-~ 99 (229)
T 3e6j_A 24 VDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTN-Q 99 (229)
T ss_dssp EECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-C
T ss_pred eEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCCC-c
Confidence 3666667777776554 7788888888887766 5567778888888888877 6666644 467777777777776 3
Q ss_pred cccCCccCCCCCCCCcCCceEecCCCCcccccccccccccccccCCCeeEEcCCCCCCChhhhhHhcccCCCCCCeEEEE
Q 001998 674 LDYLPKGVERLTSLRTLREFVVSSTGGKYCTKACKVEGLRQLNHLRGTLRIRGLGNVTDVEEAEKADLEKKKNIVGLELR 753 (984)
Q Consensus 674 l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~ 753 (984)
+..+|..
T Consensus 100 l~~l~~~------------------------------------------------------------------------- 106 (229)
T 3e6j_A 100 LTVLPSA------------------------------------------------------------------------- 106 (229)
T ss_dssp CCCCCTT-------------------------------------------------------------------------
T ss_pred CCccChh-------------------------------------------------------------------------
Confidence 3333221
Q ss_pred EcCCcccccCcCchhhccHHHHhhcCCCCCCCCeEEEeecCCCCCCCchhhcCCCCcEEEEeCcCCCCcCCC-CCCCCCc
Q 001998 754 FDKEEAATEGINEENEINHQAISEALRPPPDLEALEIMHYKGQTAFPSWIVSLNKLKKLKLSSCCKCEIMPP-LGALPSL 832 (984)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~l~~-l~~Lp~L 832 (984)
.+..+++|++|++++|.+.. +|..+..+++|+.|+|++|......+. +..+++|
T Consensus 107 ------------------------~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 161 (229)
T 3e6j_A 107 ------------------------VFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSL 161 (229)
T ss_dssp ------------------------TTTTCTTCCEEECCSSCCCS-CCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTC
T ss_pred ------------------------HhCcchhhCeEeccCCcccc-cCcccccCCCCCEEECCCCcCCccCHHHHhCCCCC
Confidence 12234566677777777665 777777888888888888865544333 7778888
Q ss_pred ceeeecccc
Q 001998 833 EILQIQRME 841 (984)
Q Consensus 833 ~~L~L~~~~ 841 (984)
+.|++.+|+
T Consensus 162 ~~L~l~~N~ 170 (229)
T 3e6j_A 162 THAYLFGNP 170 (229)
T ss_dssp CEEECTTSC
T ss_pred CEEEeeCCC
Confidence 888888775
No 119
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.28 E-value=3.2e-12 Score=129.82 Aligned_cols=103 Identities=29% Similarity=0.419 Sum_probs=51.3
Q ss_pred CceeEEeccCCCcchhhhHHhhhccccccee-cCCCCccccCccc-ccccCccceEEecCCCccccchh-hccCCcccEE
Q 001998 566 KKLRSLLIHSPLEVLSPVLKGLFDHLTYGED-DGGENTVHDIPRE-IEKLIHLRSLRLAGLKIEELPET-CCKLFNLQTL 642 (984)
Q Consensus 566 ~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lrv-~l~~~~i~~lp~~-i~~L~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L 642 (984)
++|+.|++.++. +....+..|..++.|+. ++++|.+..+|.. +..+++|++|+|++|.++.+|.. +.++++|++|
T Consensus 28 ~~l~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 105 (208)
T 2o6s_A 28 AQTTYLDLETNS--LKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKEL 105 (208)
T ss_dssp TTCSEEECCSSC--CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCcEEEcCCCc--cCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEE
Confidence 456666666654 22223333445555555 5555555544432 34555555555555555544433 3455555555
Q ss_pred eccccccccccccc-ccCCCCCCeEEeccC
Q 001998 643 DINECYRLKRLPQG-VGSLVNLRHLVVSLN 671 (984)
Q Consensus 643 ~L~~~~~l~~lP~~-i~~L~~L~~L~l~~~ 671 (984)
++++|. +..+|.. +.++++|++|++++|
T Consensus 106 ~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N 134 (208)
T 2o6s_A 106 ALNTNQ-LQSLPDGVFDKLTQLKDLRLYQN 134 (208)
T ss_dssp ECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred EcCCCc-CcccCHhHhccCCcCCEEECCCC
Confidence 555554 4444432 345555555555554
No 120
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.28 E-value=1.8e-13 Score=160.25 Aligned_cols=60 Identities=22% Similarity=0.208 Sum_probs=45.4
Q ss_pred cCCCCCCCCeEEEeecCCCCCC-CchhhcCCCCcEEEEeCcCCCCcCCCCC----CCCCcceeee
Q 001998 778 ALRPPPDLEALEIMHYKGQTAF-PSWIVSLNKLKKLKLSSCCKCEIMPPLG----ALPSLEILQI 837 (984)
Q Consensus 778 ~l~~~~~L~~L~L~~~~~~~~l-p~~l~~l~~L~~L~L~~~~~~~~l~~l~----~Lp~L~~L~L 837 (984)
.+..+++|++|+|++|.+.+.. |..++.+++|+.|+|++|.....+|... .+|+|+.|++
T Consensus 503 ~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 503 GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 4556778888888888888722 8888899999999999987666555433 3788888864
No 121
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.27 E-value=4.8e-12 Score=153.08 Aligned_cols=155 Identities=22% Similarity=0.149 Sum_probs=97.0
Q ss_pred ccceeEEEEEecCcccccccccCCCceeEEeccCCCc--chhhhHHhhhccccccee-cCCCCccccCcccccccCccce
Q 001998 542 QDKLRHSILVLDKVASFPVSIFNAKKLRSLLIHSPLE--VLSPVLKGLFDHLTYGED-DGGENTVHDIPREIEKLIHLRS 618 (984)
Q Consensus 542 ~~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~--~~~~~~~~~~~~l~~Lrv-~l~~~~i~~lp~~i~~L~~Lr~ 618 (984)
...++++.+..+.+...+..+.....|+.+.+..... ......+..|..+..|+. ++++|.+..+|..+.++.+|++
T Consensus 172 ~~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~ 251 (727)
T 4b8c_D 172 TPLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTR 251 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSC
T ss_pred CCccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCE
Confidence 3457777777766655455544445555554433210 011134666888999999 9999999999998999999999
Q ss_pred EEecCCCccccchhhccCCcccEEecccccccccccccccCCCCCCeEEeccCCCcccCCccCCCCCCCCcCCceEecCC
Q 001998 619 LRLAGLKIEELPETCCKLFNLQTLDINECYRLKRLPQGVGSLVNLRHLVVSLNGDLDYLPKGVERLTSLRTLREFVVSST 698 (984)
Q Consensus 619 L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~ 698 (984)
|+|++|.|+.+|..+++|++|++|+|++|. ++.+|..+++|++|++|++++| .+..+|..|++|++|+.|++..+...
T Consensus 252 L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 252 LYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp CBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSCCC
T ss_pred EEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCCCEEECCCC-CCCccChhhhcCCCccEEeCCCCccC
Confidence 999999999999999999999999999998 7799999999999999999988 67788988999999999988776654
No 122
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.26 E-value=5.5e-14 Score=164.60 Aligned_cols=64 Identities=23% Similarity=0.218 Sum_probs=54.9
Q ss_pred hhcCCCCCCCCeEEEeecCCCCCCCchhhcCCCCcEEEEeCcCCCCcC-C-CCCCCCCcceeeecccc
Q 001998 776 SEALRPPPDLEALEIMHYKGQTAFPSWIVSLNKLKKLKLSSCCKCEIM-P-PLGALPSLEILQIQRME 841 (984)
Q Consensus 776 ~~~l~~~~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~l-~-~l~~Lp~L~~L~L~~~~ 841 (984)
+..+..+++|+.|+|++|.+.+ +| .++.+++|+.|+|++|...... | .++.+++|+.|+|++|.
T Consensus 479 p~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~ 544 (567)
T 1dce_A 479 PPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS 544 (567)
T ss_dssp CGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred chhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCc
Confidence 4456667899999999999988 88 7889999999999999877653 4 49999999999999987
No 123
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.26 E-value=8e-12 Score=128.81 Aligned_cols=144 Identities=26% Similarity=0.366 Sum_probs=115.3
Q ss_pred EEEEecCcccccccccCCCceeEEeccCCCcchhhhHHhhhccccccee-cCCCCccccCccc-ccccCccceEEecCCC
Q 001998 548 SILVLDKVASFPVSIFNAKKLRSLLIHSPLEVLSPVLKGLFDHLTYGED-DGGENTVHDIPRE-IEKLIHLRSLRLAGLK 625 (984)
Q Consensus 548 l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lrv-~l~~~~i~~lp~~-i~~L~~Lr~L~L~~~~ 625 (984)
+......+..+|..+. ++|+.|++.+|. +....+..|..++.|+. ++++|.+..+|.. +..+++|++|+|++|.
T Consensus 24 v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~--i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 24 VDCRSKRHASVPAGIP--TNAQILYLHDNQ--ITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp EECTTSCCSSCCSCCC--TTCSEEECCSSC--CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred eEccCCCcCccCCCCC--CCCCEEEcCCCc--cCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence 4444445556665543 789999999987 44445666888999999 9999999888754 6889999999999999
Q ss_pred ccccchh-hccCCcccEEecccccccccccccccCCCCCCeEEeccCCCcccCCc-cCCCCCCCCcCCceEecC
Q 001998 626 IEELPET-CCKLFNLQTLDINECYRLKRLPQGVGSLVNLRHLVVSLNGDLDYLPK-GVERLTSLRTLREFVVSS 697 (984)
Q Consensus 626 i~~lp~~-i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~~p~-~i~~l~~L~~L~~~~~~~ 697 (984)
|+.+|.. +..+++|++|+|++|. +..+|..+..+++|++|++++| .+..+|. .+..+++|+.|++..+..
T Consensus 100 l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 100 LTVLPSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred CCccChhHhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCCc
Confidence 9988765 6889999999999988 8899999999999999999998 5666764 478888888887765543
No 124
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.25 E-value=3.2e-11 Score=123.33 Aligned_cols=72 Identities=17% Similarity=0.288 Sum_probs=49.5
Q ss_pred cCCCCccccCcccccccCccceEEecCCCccccch--hhccCCcccEEecccccccccccc-cccCCCCCCeEEeccC
Q 001998 597 DGGENTVHDIPREIEKLIHLRSLRLAGLKIEELPE--TCCKLFNLQTLDINECYRLKRLPQ-GVGSLVNLRHLVVSLN 671 (984)
Q Consensus 597 ~l~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~--~i~~L~~L~~L~L~~~~~l~~lP~-~i~~L~~L~~L~l~~~ 671 (984)
+++++.+..+|..+.. .+++|+|++|.|+.++. .+.++++|++|+|++|. ++.+|. .+.++++|++|++++|
T Consensus 17 ~~s~n~l~~iP~~~~~--~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 17 DCSNQKLNKIPEHIPQ--YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp ECCSSCCSSCCSCCCT--TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS
T ss_pred EeCCCCcccCccCCCC--CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc-CCEECHHHhCCCCCCCEEECCCC
Confidence 6677777777765543 45777777777776643 36777777777777776 555554 5677777777777766
No 125
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.24 E-value=1.1e-11 Score=126.82 Aligned_cols=144 Identities=23% Similarity=0.270 Sum_probs=111.3
Q ss_pred EEEEecCcccccccccCCCceeEEeccCCCcchhhhHHhhhccccccee-cCCCCccccC-cccccccCccceEEecCCC
Q 001998 548 SILVLDKVASFPVSIFNAKKLRSLLIHSPLEVLSPVLKGLFDHLTYGED-DGGENTVHDI-PREIEKLIHLRSLRLAGLK 625 (984)
Q Consensus 548 l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lrv-~l~~~~i~~l-p~~i~~L~~Lr~L~L~~~~ 625 (984)
+....+.+..+|..+. ++|+.|++.+|. +....+..|..++.|+. ++++|.+..+ |..+.++++|++|+|++|.
T Consensus 16 v~c~~~~l~~iP~~l~--~~l~~L~l~~n~--i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 16 VDCRGKGLTEIPTNLP--ETITEIRLEQNT--IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp EECTTSCCSSCCSSCC--TTCCEEECCSSC--CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred EEcCCCCcCcCCCccC--cCCCEEECCCCc--CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 3344445555665544 688999998886 44444556888889999 9999998876 7789999999999999999
Q ss_pred ccccchh-hccCCcccEEecccccccccc-cccccCCCCCCeEEeccCCCcccCCc-cCCCCCCCCcCCceEecC
Q 001998 626 IEELPET-CCKLFNLQTLDINECYRLKRL-PQGVGSLVNLRHLVVSLNGDLDYLPK-GVERLTSLRTLREFVVSS 697 (984)
Q Consensus 626 i~~lp~~-i~~L~~L~~L~L~~~~~l~~l-P~~i~~L~~L~~L~l~~~~~l~~~p~-~i~~l~~L~~L~~~~~~~ 697 (984)
|+.+|.. +.++++|++|+|++|. +..+ |..+..+++|++|++++| .+..+|. .+..+++|+.|++..+..
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCccCHhHccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 9988875 5789999999999988 6655 567889999999999988 5566654 478888888887765443
No 126
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.23 E-value=3.7e-10 Score=126.74 Aligned_cols=296 Identities=12% Similarity=0.079 Sum_probs=173.3
Q ss_pred cCCcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccC---CCeEEEEEecCCCCHHH
Q 001998 177 DVSEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINN---FEIRVWVCVSDPFDEFS 253 (984)
Q Consensus 177 ~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---F~~~~wv~~s~~~~~~~ 253 (984)
.+..++||+.+++.+.+++..... ....+.+.|+|++|+||||||+.+++. .... -...+|+.+....+...
T Consensus 18 ~p~~~~gr~~e~~~l~~~l~~~~~---~~~~~~vli~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~i~~~~~~~~~~ 92 (386)
T 2qby_A 18 IPDELPHREDQIRKIASILAPLYR---EEKPNNIFIYGLTGTGKTAVVKFVLSK--LHKKFLGKFKHVYINTRQIDTPYR 92 (386)
T ss_dssp CCSCCTTCHHHHHHHHHSSGGGGG---TCCCCCEEEEECTTSSHHHHHHHHHHH--HHHHTCSSCEEEEEEHHHHCSHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHc---CCCCCeEEEECCCCCCHHHHHHHHHHH--HHHHhcCCceEEEEECCCCCCHHH
Confidence 347899999999999998864211 123457899999999999999999983 3332 23567888777777888
Q ss_pred HHHHHHHHhcCCCC-CcccHHHHHHHHHHHhC--CCceEEEEEcCCCCC----cCChhhHHHhhcC-CCCCcEEEEEccc
Q 001998 254 VAKAIIEELEGSAT-DLHELNSLLRRIGANIA--GQKFFMVLDNLWTDD----YRKWEPFRNCLMN-GLRGSKILLTTRK 325 (984)
Q Consensus 254 ~~~~i~~~l~~~~~-~~~~~~~~~~~l~~~l~--~kr~LlVlDdvw~~~----~~~~~~l~~~l~~-~~~gs~iiiTtr~ 325 (984)
++..++.+++.... .......+...+.+.+. +++.+||||+++.-. .+.+..+...+.. ...+..+|+||+.
T Consensus 93 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~ 172 (386)
T 2qby_A 93 VLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITND 172 (386)
T ss_dssp HHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESC
T ss_pred HHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECC
Confidence 88888887754322 11234455555555554 458999999996521 2223334333322 2345677888876
Q ss_pred hHHHhhcCC-------CCeEeCCCCChHhHHHHHHHHhcCC-CCCCCchhHHHHHHHHHHhcC---CChHHHHHH-HHhh
Q 001998 326 ETVARMMES-------TDIVYVQGLSEPECWSLFRRFAFSG-RTPLECDQLEEIGRGIVRKCK---GLPLAAKTI-GSLL 393 (984)
Q Consensus 326 ~~v~~~~~~-------~~~~~l~~L~~~~~~~lf~~~~~~~-~~~~~~~~l~~~~~~i~~~~~---GlPLai~~~-~~~l 393 (984)
......+.. ...+.+.+++.++..+++...+... ...... .++.+.|++.++ |.|..+..+ ..+.
T Consensus 173 ~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~ll~~a~ 249 (386)
T 2qby_A 173 VKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLP---DNVIKLCAALAAREHGDARRALDLLRVSG 249 (386)
T ss_dssp GGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSC---HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 543222211 1478999999999999998764211 111112 344555777776 999844333 2222
Q ss_pred --c---c--CCCHHHHHHHHhhhhhhhhhhcccccchhhccccCCChhhhhhhhhcccCCC-C-CccChHHHHHHH--HH
Q 001998 394 --Q---F--KRTKEEWQSVLDSEMWQLEEFERGLSAPLFLSYNDLPFEIKRCFSYCAIFPK-G-SSLKKDELVKLW--MA 462 (984)
Q Consensus 394 --~---~--~~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl~~~~fp~-~-~~i~~~~li~~W--ia 462 (984)
. . .-+.+.+..++..... ..+.-++..+|.+.+..+..++...+ + ..+....+.+.. ++
T Consensus 250 ~~a~~~~~~~i~~~~v~~a~~~~~~----------~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~ 319 (386)
T 2qby_A 250 EIAERMKDTKVKEEYVYMAKEEIER----------DRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNIC 319 (386)
T ss_dssp HHHHHTTCSSCCHHHHHHHHHHHHH----------HHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHH
T ss_pred HHHHhcCCCccCHHHHHHHHHHHhh----------chHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHH
Confidence 1 1 1245666665543221 12444566788777776665553222 2 123333332221 11
Q ss_pred --cCCcCCCCCchHHHhHHHHHHHHhhccccccee
Q 001998 463 --QGYIVPKGNKEMEVIGLEYFDCLASRSFYQQFV 495 (984)
Q Consensus 463 --eg~i~~~~~~~~e~~~~~~~~~L~~r~l~~~~~ 495 (984)
-| +.+. .......+++.|...+++....
T Consensus 320 ~~~g-~~~~----~~~~~~~~l~~L~~~gli~~~~ 349 (386)
T 2qby_A 320 KKLG-VEAV----TQRRVSDIINELDMVGILTAKV 349 (386)
T ss_dssp HHHT-CCCC----CHHHHHHHHHHHHHHTSEEEEE
T ss_pred HhcC-CCCC----CHHHHHHHHHHHHhCCCEEEEe
Confidence 12 1111 1234567899999999997643
No 127
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.22 E-value=1.8e-11 Score=124.20 Aligned_cols=162 Identities=21% Similarity=0.237 Sum_probs=113.2
Q ss_pred ecCCCCccccCcccccccCccceEEecCCCccccchh-hccCCcccEEeccccccccccccc-ccCCCCCCeEEeccCCC
Q 001998 596 DDGGENTVHDIPREIEKLIHLRSLRLAGLKIEELPET-CCKLFNLQTLDINECYRLKRLPQG-VGSLVNLRHLVVSLNGD 673 (984)
Q Consensus 596 v~l~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lP~~-i~~L~~L~~L~l~~~~~ 673 (984)
++++++.+..+|..+ ..+|++|++++|.++.+|.. +.++++|++|++++|. ++.+|.. +..+++|++|++++| .
T Consensus 12 v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~ 87 (208)
T 2o6s_A 12 VECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLNLSTN-Q 87 (208)
T ss_dssp EECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-C
T ss_pred EEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCc-cCccChhhcCCCCCcCEEECCCC-c
Confidence 366777778888655 45899999999999888764 6789999999999987 7777754 578999999999888 4
Q ss_pred cccCCcc-CCCCCCCCcCCceEecCCCCcccccccccccccccccCCCeeEEcCCCCCCChhhhhHhcccCCCCCCeEEE
Q 001998 674 LDYLPKG-VERLTSLRTLREFVVSSTGGKYCTKACKVEGLRQLNHLRGTLRIRGLGNVTDVEEAEKADLEKKKNIVGLEL 752 (984)
Q Consensus 674 l~~~p~~-i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L 752 (984)
+..+|.. +..+++|+.|++..+
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N--------------------------------------------------------- 110 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTN--------------------------------------------------------- 110 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSS---------------------------------------------------------
T ss_pred CCccCHhHhcCccCCCEEEcCCC---------------------------------------------------------
Confidence 5555543 456666666654321
Q ss_pred EEcCCcccccCcCchhhccHHHHhhcCCCCCCCCeEEEeecCCCCCCCc-hhhcCCCCcEEEEeCcCCCCcCCCCCCCCC
Q 001998 753 RFDKEEAATEGINEENEINHQAISEALRPPPDLEALEIMHYKGQTAFPS-WIVSLNKLKKLKLSSCCKCEIMPPLGALPS 831 (984)
Q Consensus 753 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~lp~-~l~~l~~L~~L~L~~~~~~~~l~~l~~Lp~ 831 (984)
..... ....+..+++|++|++++|.+.+ +|. .+..+++|+.|++++|.. .+.+|+
T Consensus 111 ---~l~~~--------------~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~------~~~~~~ 166 (208)
T 2o6s_A 111 ---QLQSL--------------PDGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDNPW------DCTCPG 166 (208)
T ss_dssp ---CCCCC--------------CTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSCCB------CCCTTT
T ss_pred ---cCccc--------------CHhHhccCCcCCEEECCCCccce-eCHHHhccCCCccEEEecCCCe------ecCCCC
Confidence 11100 01124456778888888887776 554 466788888888888843 345678
Q ss_pred cceeeeccccC
Q 001998 832 LEILQIQRMES 842 (984)
Q Consensus 832 L~~L~L~~~~~ 842 (984)
|++|++..+..
T Consensus 167 l~~L~~~~n~~ 177 (208)
T 2o6s_A 167 IRYLSEWINKH 177 (208)
T ss_dssp THHHHHHHHHC
T ss_pred HHHHHHHHHhC
Confidence 88888877653
No 128
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.22 E-value=1.1e-11 Score=121.02 Aligned_cols=128 Identities=20% Similarity=0.167 Sum_probs=81.8
Q ss_pred CceeEEeccCCCcchhhhHHhhhccccccee-cCCCCccccCcccccccCccceEEecCCCccc-cchhhccCCcccEEe
Q 001998 566 KKLRSLLIHSPLEVLSPVLKGLFDHLTYGED-DGGENTVHDIPREIEKLIHLRSLRLAGLKIEE-LPETCCKLFNLQTLD 643 (984)
Q Consensus 566 ~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lrv-~l~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~-lp~~i~~L~~L~~L~ 643 (984)
++|+.|++.++.... ..++..+..++.|+. ++++|.+..+ ..++.+++|++|+|++|.+.. +|..+.++++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~-~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSND-GKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBT-TBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCCh-hhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 556666666654210 113333556666666 6666666666 566777777777777777775 666666677777777
Q ss_pred ccccccccccc--ccccCCCCCCeEEeccCCCcccCCc----cCCCCCCCCcCCceEecC
Q 001998 644 INECYRLKRLP--QGVGSLVNLRHLVVSLNGDLDYLPK----GVERLTSLRTLREFVVSS 697 (984)
Q Consensus 644 L~~~~~l~~lP--~~i~~L~~L~~L~l~~~~~l~~~p~----~i~~l~~L~~L~~~~~~~ 697 (984)
+++|. ++.+| ..+..+++|++|++++| .+..+|. .+..+++|+.|++..+..
T Consensus 102 Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 102 LSGNK-LKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp CBSSS-CCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred ccCCc-cCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 77775 66655 56677777777777777 4555554 566777777777766543
No 129
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.22 E-value=1.4e-11 Score=120.19 Aligned_cols=134 Identities=22% Similarity=0.177 Sum_probs=111.1
Q ss_pred cccceeEEEEEecCcc--cccccccCCCceeEEeccCCCcchhhhHHhhhccccccee-cCCCCcccc-CcccccccCcc
Q 001998 541 SQDKLRHSILVLDKVA--SFPVSIFNAKKLRSLLIHSPLEVLSPVLKGLFDHLTYGED-DGGENTVHD-IPREIEKLIHL 616 (984)
Q Consensus 541 ~~~~~r~l~l~~~~~~--~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lrv-~l~~~~i~~-lp~~i~~L~~L 616 (984)
.+.+++++.+..+.+. .+|..+..+++|+.|++.+|. +... ..+..++.|+. ++++|.+.. +|..+.++++|
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~--l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 97 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG--LISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL 97 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC--CCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTC
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC--CCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCC
Confidence 4567899999888877 677777889999999999987 3332 45788899999 999999887 77777789999
Q ss_pred ceEEecCCCccccc--hhhccCCcccEEecccccccccccc----cccCCCCCCeEEeccCCCcccCCcc
Q 001998 617 RSLRLAGLKIEELP--ETCCKLFNLQTLDINECYRLKRLPQ----GVGSLVNLRHLVVSLNGDLDYLPKG 680 (984)
Q Consensus 617 r~L~L~~~~i~~lp--~~i~~L~~L~~L~L~~~~~l~~lP~----~i~~L~~L~~L~l~~~~~l~~~p~~ 680 (984)
++|+|++|.++.+| ..+..+++|++|++++|. +..+|. .+..+++|++|++++| ....+|..
T Consensus 98 ~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~~ 165 (168)
T 2ell_A 98 THLNLSGNKLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDR-EDQEAPDS 165 (168)
T ss_dssp CEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEET-TSCBCCSS
T ss_pred CEEeccCCccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCC-Chhhcccc
Confidence 99999999999877 688999999999999997 777776 7889999999999988 45556643
No 130
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.20 E-value=2.5e-11 Score=124.14 Aligned_cols=146 Identities=18% Similarity=0.202 Sum_probs=113.3
Q ss_pred eEEEEEecCcccccccccCCCceeEEeccCCCcchhhh-HHhhhccccccee-cCCCCccccCcc-cccccCccceEEec
Q 001998 546 RHSILVLDKVASFPVSIFNAKKLRSLLIHSPLEVLSPV-LKGLFDHLTYGED-DGGENTVHDIPR-EIEKLIHLRSLRLA 622 (984)
Q Consensus 546 r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~-~~~~~~~l~~Lrv-~l~~~~i~~lp~-~i~~L~~Lr~L~L~ 622 (984)
+.+.+..+.+..+|..+. +.++.|++.+|. +... ....|..++.|+. ++++|.+..++. .+.++.+|++|+|+
T Consensus 14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~--l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNE--FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSSC--CCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCCCcccCccCCC--CCCCEEEcCCCc--CCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 356666666666666553 456889998887 3332 2345788899999 999999888765 78899999999999
Q ss_pred CCCccccch-hhccCCcccEEecccccccccc-cccccCCCCCCeEEeccCCCcccC-CccCCCCCCCCcCCceEecC
Q 001998 623 GLKIEELPE-TCCKLFNLQTLDINECYRLKRL-PQGVGSLVNLRHLVVSLNGDLDYL-PKGVERLTSLRTLREFVVSS 697 (984)
Q Consensus 623 ~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~l-P~~i~~L~~L~~L~l~~~~~l~~~-p~~i~~l~~L~~L~~~~~~~ 697 (984)
+|.++.+|. .+.++++|++|+|++|. +..+ |..+..+++|++|++++|. +..+ |..+..+++|+.|++..+..
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCcCC
Confidence 999998776 48899999999999998 5555 6778999999999999984 4545 67788899999888765543
No 131
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.20 E-value=1.6e-11 Score=136.25 Aligned_cols=93 Identities=22% Similarity=0.258 Sum_probs=63.3
Q ss_pred cCCCCccccCcccccccCccceEEecCCCccccchh-hc-cCCcccEEeccccccccccc-ccccCCCCCCeEEeccCCC
Q 001998 597 DGGENTVHDIPREIEKLIHLRSLRLAGLKIEELPET-CC-KLFNLQTLDINECYRLKRLP-QGVGSLVNLRHLVVSLNGD 673 (984)
Q Consensus 597 ~l~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~-i~-~L~~L~~L~L~~~~~l~~lP-~~i~~L~~L~~L~l~~~~~ 673 (984)
+++++.+..+|..+. .+|++|+|++|.|+.+|.. +. ++++|++|+|++|. +..+| ..+.++++|++|++++| .
T Consensus 24 ~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N-~ 99 (361)
T 2xot_A 24 SCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSN-H 99 (361)
T ss_dssp ECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-C
T ss_pred EeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEEECCCC-c
Confidence 666777777776554 3577888888888877664 33 77888888888876 66665 45778888888888877 4
Q ss_pred cccCCc-cCCCCCCCCcCCce
Q 001998 674 LDYLPK-GVERLTSLRTLREF 693 (984)
Q Consensus 674 l~~~p~-~i~~l~~L~~L~~~ 693 (984)
+..+|. .+..+++|+.|++.
T Consensus 100 l~~~~~~~~~~l~~L~~L~L~ 120 (361)
T 2xot_A 100 LHTLDEFLFSDLQALEVLLLY 120 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECC
T ss_pred CCcCCHHHhCCCcCCCEEECC
Confidence 455543 35566666666543
No 132
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.20 E-value=2e-12 Score=156.39 Aligned_cols=126 Identities=22% Similarity=0.147 Sum_probs=76.0
Q ss_pred CceeEEeccCCCcchhhhHHhhh--ccccccee---cCCCCccccCcccccccCccceEEecCCCccccchhhccCCccc
Q 001998 566 KKLRSLLIHSPLEVLSPVLKGLF--DHLTYGED---DGGENTVHDIPREIEKLIHLRSLRLAGLKIEELPETCCKLFNLQ 640 (984)
Q Consensus 566 ~~Lr~L~l~~~~~~~~~~~~~~~--~~l~~Lrv---~l~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~ 640 (984)
+.++.|.+.++. ........+ ..+..+.+ +++.+.+...|..+..+.+|++|+|++|.+..+|..+.++++|+
T Consensus 173 ~~~~~l~L~~n~--~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~ 250 (727)
T 4b8c_D 173 PLTPKIELFANG--KDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLT 250 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCS
T ss_pred CccceEEeeCCC--CCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCC
Confidence 457777776664 222111111 22333333 34455566667889999999999999999999999999999999
Q ss_pred EEecccccccccccccccCCCCCCeEEeccCCCcccCCccCCCCCCCCcCCceEe
Q 001998 641 TLDINECYRLKRLPQGVGSLVNLRHLVVSLNGDLDYLPKGVERLTSLRTLREFVV 695 (984)
Q Consensus 641 ~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~ 695 (984)
+|+|++|. ++.+|..+++|++|++|++++| .+..+|..+++|++|+.|++..+
T Consensus 251 ~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N 303 (727)
T 4b8c_D 251 RLYLNGNS-LTELPAEIKNLSNLRVLDLSHN-RLTSLPAELGSCFQLKYFYFFDN 303 (727)
T ss_dssp CCBCTTSC-CSCCCGGGGGGTTCCEEECTTS-CCSSCCSSGGGGTTCSEEECCSS
T ss_pred EEEeeCCc-CcccChhhhCCCCCCEEeCcCC-cCCccChhhcCCCCCCEEECCCC
Confidence 99999998 7799999999999999999999 56689999999999999877543
No 133
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.20 E-value=1.6e-10 Score=120.73 Aligned_cols=198 Identities=14% Similarity=0.088 Sum_probs=120.2
Q ss_pred CcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHH
Q 001998 179 SEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAI 258 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 258 (984)
.+++||+.+++.+..++.... ..+++.|+|.+|+||||||+.+++.. ...+.... ....... ....+
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~------~~~~~ll~G~~G~GKT~l~~~~~~~~--~~~~~~~~----~~~~~~~-~~~~~ 89 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGR------IHHAYLFSGTRGVGKTSIARLLAKGL--NCETGITA----TPCGVCD-NCREI 89 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTC------CCSEEEEECSTTSCHHHHHHHHHHHH--HCTTCSCS----SCCSCSH-HHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC------CCeEEEEECCCCCCHHHHHHHHHHHh--cCCCCCCC----CCCcccH-HHHHH
Confidence 469999999999999987543 23478899999999999999998742 21110000 0000000 00011
Q ss_pred HHHh-----cCCCCCcccHHHHHHHHHHH----hCCCceEEEEEcCCCCCcCChhhHHHhhcCCCCCcEEEEEccchHH-
Q 001998 259 IEEL-----EGSATDLHELNSLLRRIGAN----IAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILLTTRKETV- 328 (984)
Q Consensus 259 ~~~l-----~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~v- 328 (984)
.... ..........+.+...+... ..+++.+||+||++.-+...+..+...+.....+..+|+||+....
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 90 EQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 169 (250)
T ss_dssp HTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred hccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 0000 00000111112222222211 2357899999999765555667777777666667889998876432
Q ss_pred Hhh-cCCCCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHHHHhh
Q 001998 329 ARM-MESTDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLPLAAKTIGSLL 393 (984)
Q Consensus 329 ~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~~l 393 (984)
... ......+.+.+++.++..+++...+........ .+..+.|++.|+|.|..+..+...+
T Consensus 170 ~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~----~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 170 PVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE----PRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp CHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCBC----HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 111 122468899999999999999887754322111 3456679999999999988776543
No 134
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.19 E-value=9.9e-12 Score=118.66 Aligned_cols=124 Identities=22% Similarity=0.221 Sum_probs=87.7
Q ss_pred CCceeEEeccCCCcchhhhHHhhhccccccee-cCCCCccccCcccccccCccceEEecCCCccc-cchhhccCCcccEE
Q 001998 565 AKKLRSLLIHSPLEVLSPVLKGLFDHLTYGED-DGGENTVHDIPREIEKLIHLRSLRLAGLKIEE-LPETCCKLFNLQTL 642 (984)
Q Consensus 565 ~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lrv-~l~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~-lp~~i~~L~~L~~L 642 (984)
.++|+.|++.++.... ..++..+..++.|+. ++++|.+..+ ..++++++|++|+|++|.++. +|..++++++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~-~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNE-GKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBT-TBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCCh-hHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 3567777777665210 123344566777777 7777777766 667788888888888888876 77777778888888
Q ss_pred eccccccccccc--ccccCCCCCCeEEeccCCCcccCCc----cCCCCCCCCcCCc
Q 001998 643 DINECYRLKRLP--QGVGSLVNLRHLVVSLNGDLDYLPK----GVERLTSLRTLRE 692 (984)
Q Consensus 643 ~L~~~~~l~~lP--~~i~~L~~L~~L~l~~~~~l~~~p~----~i~~l~~L~~L~~ 692 (984)
++++|. ++.+| ..+..+++|++|++++| .+..+|. .++.+++|+.|++
T Consensus 94 ~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 94 NLSGNK-IKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp ECTTSC-CCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETT
T ss_pred ECCCCc-CCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccC
Confidence 888887 66654 67788888888888887 5555654 4677777777765
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.19 E-value=1.8e-11 Score=120.43 Aligned_cols=130 Identities=20% Similarity=0.167 Sum_probs=105.7
Q ss_pred cccCCCceeEEeccCCCcchhhhHHhhhccccccee-cCCCCccccCcccccccCccceEEecCCCccccchhh-ccCCc
Q 001998 561 SIFNAKKLRSLLIHSPLEVLSPVLKGLFDHLTYGED-DGGENTVHDIPREIEKLIHLRSLRLAGLKIEELPETC-CKLFN 638 (984)
Q Consensus 561 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lrv-~l~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i-~~L~~ 638 (984)
.+.++++|+.|++.+|. +.. ++.+....+.|+. ++++|.+..+ ..++.+++|++|+|++|.|+.+|+.+ +.+++
T Consensus 14 ~~~~~~~L~~L~l~~n~--l~~-i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYK--IPV-IENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp EEECTTSCEEEECTTSC--CCS-CCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred hcCCcCCceEEEeeCCC--Cch-hHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 45678889999999886 333 2333333348888 9999998888 67899999999999999999998765 89999
Q ss_pred ccEEecccccccccccc--cccCCCCCCeEEeccCCCcccCCcc----CCCCCCCCcCCceEec
Q 001998 639 LQTLDINECYRLKRLPQ--GVGSLVNLRHLVVSLNGDLDYLPKG----VERLTSLRTLREFVVS 696 (984)
Q Consensus 639 L~~L~L~~~~~l~~lP~--~i~~L~~L~~L~l~~~~~l~~~p~~----i~~l~~L~~L~~~~~~ 696 (984)
|++|++++|. +..+|. .+..+++|++|++++| .+..+|.. +..+++|+.|++..+.
T Consensus 90 L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 90 LTELILTNNS-LVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 9999999998 788887 7899999999999998 56677764 7889999999877654
No 136
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.16 E-value=7.9e-11 Score=124.03 Aligned_cols=145 Identities=18% Similarity=0.155 Sum_probs=106.8
Q ss_pred ccceeEEEEEecCcccccccccCCCceeEEeccCCCcchhhhHHhhhccccccee-cCCCCccccCcccccccCccceEE
Q 001998 542 QDKLRHSILVLDKVASFPVSIFNAKKLRSLLIHSPLEVLSPVLKGLFDHLTYGED-DGGENTVHDIPREIEKLIHLRSLR 620 (984)
Q Consensus 542 ~~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lrv-~l~~~~i~~lp~~i~~L~~Lr~L~ 620 (984)
..+++.+.+..+.+..++ .+..+++|+.|++.+|. +....+ +..++.|+. ++++|.+..+|.... .+|++|+
T Consensus 40 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~--i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~ 112 (263)
T 1xeu_A 40 LSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQ--ISDLSP--LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLF 112 (263)
T ss_dssp HTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSC--CCCCGG--GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEE
T ss_pred cCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCc--cCCChh--hccCCCCCEEECCCCccCCcCcccc--CcccEEE
Confidence 356777777777777655 67778888888888876 333222 777888888 888888887776443 8888888
Q ss_pred ecCCCccccchhhccCCcccEEecccccccccccccccCCCCCCeEEeccCCCcccCCccCCCCCCCCcCCceEecCC
Q 001998 621 LAGLKIEELPETCCKLFNLQTLDINECYRLKRLPQGVGSLVNLRHLVVSLNGDLDYLPKGVERLTSLRTLREFVVSST 698 (984)
Q Consensus 621 L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~ 698 (984)
|++|.++.+| .+.++++|++|++++|. ++.+| .+..+++|++|++++| .+..+ ..+..+++|+.|++..+...
T Consensus 113 L~~N~l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~L~~L~L~~N-~i~~~-~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 113 LDNNELRDTD-SLIHLKNLEILSIRNNK-LKSIV-MLGFLSKLEVLDLHGN-EITNT-GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp CCSSCCSBSG-GGTTCTTCCEEECTTSC-CCBCG-GGGGCTTCCEEECTTS-CCCBC-TTSTTCCCCCEEEEEEEEEE
T ss_pred ccCCccCCCh-hhcCcccccEEECCCCc-CCCCh-HHccCCCCCEEECCCC-cCcch-HHhccCCCCCEEeCCCCccc
Confidence 8888888775 57788888888888887 77776 4788888888888887 44555 45777888888877765543
No 137
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.13 E-value=3.2e-11 Score=115.08 Aligned_cols=124 Identities=23% Similarity=0.208 Sum_probs=108.2
Q ss_pred cccceeEEEEEecCcc--cccccccCCCceeEEeccCCCcchhhhHHhhhccccccee-cCCCCcccc-CcccccccCcc
Q 001998 541 SQDKLRHSILVLDKVA--SFPVSIFNAKKLRSLLIHSPLEVLSPVLKGLFDHLTYGED-DGGENTVHD-IPREIEKLIHL 616 (984)
Q Consensus 541 ~~~~~r~l~l~~~~~~--~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lrv-~l~~~~i~~-lp~~i~~L~~L 616 (984)
.+.+++++.+..+.+. .+|..+..+++|+.|++.+|. +... ..+..++.|+. ++++|.+.. +|..++.+++|
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~--l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 90 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG--LTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNL 90 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC--CCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTC
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC--CCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCC
Confidence 4567899999988887 677778899999999999987 3332 55889999999 999999988 88888889999
Q ss_pred ceEEecCCCccccc--hhhccCCcccEEecccccccccccc----cccCCCCCCeEEec
Q 001998 617 RSLRLAGLKIEELP--ETCCKLFNLQTLDINECYRLKRLPQ----GVGSLVNLRHLVVS 669 (984)
Q Consensus 617 r~L~L~~~~i~~lp--~~i~~L~~L~~L~L~~~~~l~~lP~----~i~~L~~L~~L~l~ 669 (984)
++|++++|.++.+| ..++.+++|++|++++|. ++.+|. .+..+++|++|+++
T Consensus 91 ~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 91 THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCC
Confidence 99999999999876 889999999999999997 777776 68999999999875
No 138
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.09 E-value=1.4e-09 Score=111.53 Aligned_cols=185 Identities=15% Similarity=0.043 Sum_probs=116.7
Q ss_pred CcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCC-eEEEEEecCCCCHHHHHHH
Q 001998 179 SEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFE-IRVWVCVSDPFDEFSVAKA 257 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~s~~~~~~~~~~~ 257 (984)
.+++|++..++.+.+++.... ...+.|+|.+|+|||++|+.+++... ...+. ..+.+..+.......+...
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~-------~~~~ll~G~~G~GKT~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKN-------IPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGIDVVRHK 88 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC-------CCCEEEECSTTSSHHHHHHHHHHHHH-GGGGGGGEEEEETTCTTCHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHhCCC-------CCeEEEECCCCCCHHHHHHHHHHHHh-ccccccceEEeccccccChHHHHHH
Confidence 468999999999999986532 22388999999999999999987311 11221 2344444443333222221
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHHHhCCCceEEEEEcCCCCCcCChhhHHHhhcCCCCCcEEEEEccchHH-Hh-hcCCC
Q 001998 258 IIEELEGSATDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILLTTRKETV-AR-MMEST 335 (984)
Q Consensus 258 i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~v-~~-~~~~~ 335 (984)
+........ .-.+++.+||+||++.-.....+.+...+.....+.++|+||+.... .. .....
T Consensus 89 ~~~~~~~~~---------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~ 153 (226)
T 2chg_A 89 IKEFARTAP---------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRC 153 (226)
T ss_dssp HHHHHTSCC---------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred HHHHhcccC---------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhC
Confidence 111111000 11367889999999765444555666666665667889999886531 11 11223
Q ss_pred CeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHHH
Q 001998 336 DIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLPLAAKTIG 390 (984)
Q Consensus 336 ~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~ 390 (984)
..+.+.+++.++..+++.+.+...+.... .+..+.|++.++|.|..+..+.
T Consensus 154 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~l~~~~~g~~r~l~~~l 204 (226)
T 2chg_A 154 AVFRFKPVPKEAMKKRLLEICEKEGVKIT----EDGLEALIYISGGDFRKAINAL 204 (226)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHTCCBC----HHHHHHHHHHHTTCHHHHHHHH
T ss_pred ceeecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 48899999999999999887643222111 3455678899999998655443
No 139
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.07 E-value=7.9e-11 Score=130.60 Aligned_cols=142 Identities=18% Similarity=0.146 Sum_probs=73.0
Q ss_pred EEEecCcccccccccCCCceeEEeccCCCcchhhhHHhhhc-cccccee-cCCCCccccCc-ccccccCccceEEecCCC
Q 001998 549 ILVLDKVASFPVSIFNAKKLRSLLIHSPLEVLSPVLKGLFD-HLTYGED-DGGENTVHDIP-REIEKLIHLRSLRLAGLK 625 (984)
Q Consensus 549 ~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~-~l~~Lrv-~l~~~~i~~lp-~~i~~L~~Lr~L~L~~~~ 625 (984)
....+.+..+|..+. +.++.|++.+|. +....+..|. ++..|+. ++++|.+..++ ..+.++++|++|+|++|.
T Consensus 24 ~c~~~~l~~iP~~~~--~~l~~L~Ls~N~--l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 99 (361)
T 2xot_A 24 SCSKQQLPNVPQSLP--SYTALLDLSHNN--LSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99 (361)
T ss_dssp ECCSSCCSSCCSSCC--TTCSEEECCSSC--CCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EeCCCCcCccCccCC--CCCCEEECCCCC--CCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence 333334444444332 235556665554 2222333344 5555665 66666655554 345566666666666666
Q ss_pred ccccch-hhccCCcccEEecccccccccc-cccccCCCCCCeEEeccCCCcccCCccC----CCCCCCCcCCceEec
Q 001998 626 IEELPE-TCCKLFNLQTLDINECYRLKRL-PQGVGSLVNLRHLVVSLNGDLDYLPKGV----ERLTSLRTLREFVVS 696 (984)
Q Consensus 626 i~~lp~-~i~~L~~L~~L~L~~~~~l~~l-P~~i~~L~~L~~L~l~~~~~l~~~p~~i----~~l~~L~~L~~~~~~ 696 (984)
|+.+|. .+.++++|++|+|++|. +..+ |..+..+++|++|++++| .+..+|..+ ..+++|+.|++..+.
T Consensus 100 l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 100 LHTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSSC
T ss_pred CCcCCHHHhCCCcCCCEEECCCCc-ccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCCC
Confidence 665544 35556666666666655 3333 445556666666666655 444455442 345555555555443
No 140
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.04 E-value=1.7e-10 Score=113.50 Aligned_cols=126 Identities=15% Similarity=0.043 Sum_probs=107.9
Q ss_pred cccceeEEEEEecCcccccccccCCC-ceeEEeccCCCcchhhhHHhhhccccccee-cCCCCccccCcccc-cccCccc
Q 001998 541 SQDKLRHSILVLDKVASFPVSIFNAK-KLRSLLIHSPLEVLSPVLKGLFDHLTYGED-DGGENTVHDIPREI-EKLIHLR 617 (984)
Q Consensus 541 ~~~~~r~l~l~~~~~~~~~~~~~~~~-~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lrv-~l~~~~i~~lp~~i-~~L~~Lr 617 (984)
...+++.+.+.++.+..++. +..+. +|+.|++.+|. +... ..|..++.|+. ++++|.+..+|..+ +.+++|+
T Consensus 17 ~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~--l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNE--IRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp CTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSC--CCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred CcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCC--CCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 35578999999888887643 44444 99999999997 3332 45888999999 99999999998665 8999999
Q ss_pred eEEecCCCccccch--hhccCCcccEEeccccccccccccc----ccCCCCCCeEEeccCC
Q 001998 618 SLRLAGLKIEELPE--TCCKLFNLQTLDINECYRLKRLPQG----VGSLVNLRHLVVSLNG 672 (984)
Q Consensus 618 ~L~L~~~~i~~lp~--~i~~L~~L~~L~L~~~~~l~~lP~~----i~~L~~L~~L~l~~~~ 672 (984)
+|+|++|.|+.+|. .++.+++|++|++++|. +..+|.. +..+++|++|+++.|.
T Consensus 92 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 92 ELILTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred EEECCCCcCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 99999999999998 89999999999999998 7888885 8999999999999884
No 141
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.03 E-value=7.3e-10 Score=121.12 Aligned_cols=287 Identities=12% Similarity=0.048 Sum_probs=152.5
Q ss_pred CCceeEEeccCCCcchhhhHHhhhcc-ccccee-cCCCCccccCcccccccCccceEEecCCCccccch-hhcc------
Q 001998 565 AKKLRSLLIHSPLEVLSPVLKGLFDH-LTYGED-DGGENTVHDIPREIEKLIHLRSLRLAGLKIEELPE-TCCK------ 635 (984)
Q Consensus 565 ~~~Lr~L~l~~~~~~~~~~~~~~~~~-l~~Lrv-~l~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~-~i~~------ 635 (984)
..+++.|.+.++- ....+.. +.. +..|++ |+++|.+......-+.++.++++.+..+ .+|. .+.+
T Consensus 24 ~~~l~~L~l~g~i--~~~~~~~-l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~---~I~~~aF~~~~~~~~ 97 (329)
T 3sb4_A 24 ANSITHLTLTGKL--NAEDFRH-LRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN---FVPAYAFSNVVNGVT 97 (329)
T ss_dssp HHHCSEEEEEEEE--CHHHHHH-HHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT---EECTTTTEEEETTEE
T ss_pred hCceeEEEEeccc--cHHHHHH-HHHhhccCeEEecCcceeEEecCcccccccccccccccc---ccCHHHhcccccccc
Confidence 5678888887642 1111222 333 667777 8888877622211222333566666555 3443 4556
Q ss_pred --CCcccEEecccccccccccc-cccCCCCCCeEEeccCCCcccCCc-cCCCCCCCCcCCceEecCCCCccccccccccc
Q 001998 636 --LFNLQTLDINECYRLKRLPQ-GVGSLVNLRHLVVSLNGDLDYLPK-GVERLTSLRTLREFVVSSTGGKYCTKACKVEG 711 (984)
Q Consensus 636 --L~~L~~L~L~~~~~l~~lP~-~i~~L~~L~~L~l~~~~~l~~~p~-~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~ 711 (984)
+++|+.|+|.+ . ++.++. .+.++++|+.|++..| .+..++. .+..+.++..+....... ..
T Consensus 98 ~g~~~L~~l~L~~-~-i~~I~~~aF~~~~~L~~l~l~~n-~i~~i~~~aF~~~~~l~~l~~~~~~~-----------~~- 162 (329)
T 3sb4_A 98 KGKQTLEKVILSE-K-IKNIEDAAFKGCDNLKICQIRKK-TAPNLLPEALADSVTAIFIPLGSSDA-----------YR- 162 (329)
T ss_dssp EECTTCCC-CBCT-T-CCEECTTTTTTCTTCCEEEBCCS-SCCEECTTSSCTTTCEEEECTTCTHH-----------HH-
T ss_pred cccCCCcEEECCc-c-ccchhHHHhhcCcccceEEcCCC-CccccchhhhcCCCceEEecCcchhh-----------hh-
Confidence 88888888887 4 777764 4788888999988877 3344443 344444443332211000 00
Q ss_pred ccccccCCCeeEEcCCCCCCChhhhhHhcccCCCCCC-eEEEEEcCCcccccCcCchhhccHHHHhhcCCCCCCCCeEEE
Q 001998 712 LRQLNHLRGTLRIRGLGNVTDVEEAEKADLEKKKNIV-GLELRFDKEEAATEGINEENEINHQAISEALRPPPDLEALEI 790 (984)
Q Consensus 712 L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~~~~L~-~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L 790 (984)
.+..+ ....+..+..|+ .+.+.... .....+...-..+.++..+.+
T Consensus 163 --~~~~i------------------~~~~f~~~~~L~~~i~~~~~~-------------~l~~~~~~~~~~~~~~~~l~~ 209 (329)
T 3sb4_A 163 --FKNRW------------------EHFAFIEGEPLETTIQVGAMG-------------KLEDEIMKAGLQPRDINFLTI 209 (329)
T ss_dssp --TSTTT------------------TTSCEEESCCCEEEEEECTTC-------------CHHHHHHHTTCCGGGCSEEEE
T ss_pred --ccccc------------------cccccccccccceeEEecCCC-------------cHHHHHhhcccCccccceEEE
Confidence 00000 001112222232 11111100 001122222233456677777
Q ss_pred eecCCCCCCCchhhcCCCCcEEEEeCcCCCCcCCC-CCCCCCcceeeeccccCceEecceecCccCCCCCCCCCCccCcc
Q 001998 791 MHYKGQTAFPSWIVSLNKLKKLKLSSCCKCEIMPP-LGALPSLEILQIQRMESVKRVGVEFLGIESFNDYAPSSSLSLTA 869 (984)
Q Consensus 791 ~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~l~~-l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~ 869 (984)
.++.....+......+++|+.|+|.+|......+. |..+++|+.|.|.++ ++.++... ..+
T Consensus 210 ~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~a----------------F~~ 271 (329)
T 3sb4_A 210 EGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRV----------------FSN 271 (329)
T ss_dssp EECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTT----------------TTT
T ss_pred eeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHH----------------hhC
Confidence 66532221111112477888888887754433222 778888888888765 66665321 234
Q ss_pred ccccc-ccccccCCCCcccccCCCCcccCCcccEEeeecCcCCCCCCc-CCCCCCCcCeEE
Q 001998 870 FPKLK-ELTLFHLDGCEEWDFGKEDVIIMPQLCYLDIRFCRKLKSLPD-QLLQSSTLEKLR 928 (984)
Q Consensus 870 f~~L~-~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~ 928 (984)
+++|+ .|.+.+ ....+.+..|..+++|+.|++.++. +..++. .+.++++|+.++
T Consensus 272 ~~~L~~~l~l~~----~l~~I~~~aF~~c~~L~~l~l~~n~-i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 272 CGRLAGTLELPA----SVTAIEFGAFMGCDNLRYVLATGDK-ITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp CTTCCEEEEECT----TCCEECTTTTTTCTTEEEEEECSSC-CCEECTTTTCTTCCCCEEE
T ss_pred ChhccEEEEEcc----cceEEchhhhhCCccCCEEEeCCCc-cCccchhhhcCCcchhhhc
Confidence 45555 555543 2334556668889999999998774 777765 566788888876
No 142
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.00 E-value=4.9e-10 Score=111.78 Aligned_cols=98 Identities=22% Similarity=0.229 Sum_probs=48.4
Q ss_pred cCCCCccccCccc--ccccCccceEEecCCCcccc-chhhccCCcccEEecccccccccccc-cccCCCCCCeEEeccCC
Q 001998 597 DGGENTVHDIPRE--IEKLIHLRSLRLAGLKIEEL-PETCCKLFNLQTLDINECYRLKRLPQ-GVGSLVNLRHLVVSLNG 672 (984)
Q Consensus 597 ~l~~~~i~~lp~~--i~~L~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lP~-~i~~L~~L~~L~l~~~~ 672 (984)
++++|.+..++.. ++.+++|++|+|++|.|+.+ |..+.++++|++|+|++|. ++.+|. .+..+++|++|++++|.
T Consensus 35 ~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 113 (192)
T 1w8a_A 35 LLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK-IKEISNKMFLGLHQLKTLNLYDNQ 113 (192)
T ss_dssp ECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC-CCEECSSSSTTCTTCCEEECCSSC
T ss_pred ECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCc
Confidence 4444444444432 45555555555555555544 3455555555555555554 333332 24555555555555553
Q ss_pred CcccCCccCCCCCCCCcCCceEe
Q 001998 673 DLDYLPKGVERLTSLRTLREFVV 695 (984)
Q Consensus 673 ~l~~~p~~i~~l~~L~~L~~~~~ 695 (984)
.....|..+..+++|+.|++..+
T Consensus 114 l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 114 ISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp CCEECTTSSTTCTTCCEEECTTC
T ss_pred CCeeCHHHhhcCCCCCEEEeCCC
Confidence 32233444555555555554443
No 143
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.95 E-value=8.3e-10 Score=110.12 Aligned_cols=123 Identities=23% Similarity=0.258 Sum_probs=98.1
Q ss_pred eEEEEEecCcccccccccCCCceeEEeccCCCcchhhhHH-hhhccccccee-cCCCCccccC-cccccccCccceEEec
Q 001998 546 RHSILVLDKVASFPVSIFNAKKLRSLLIHSPLEVLSPVLK-GLFDHLTYGED-DGGENTVHDI-PREIEKLIHLRSLRLA 622 (984)
Q Consensus 546 r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~-~~~~~l~~Lrv-~l~~~~i~~l-p~~i~~L~~Lr~L~L~ 622 (984)
+.+.+..+.+..+|..+.. +|+.|++.++. +....+ ..|..++.|+. ++++|.+..+ |..+.++.+|++|+|+
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~--i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNE--LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCC--CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCc--CCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 4566667777777765543 89999999886 333333 24788999999 9999998887 6789999999999999
Q ss_pred CCCccccch-hhccCCcccEEecccccccccccccccCCCCCCeEEeccCC
Q 001998 623 GLKIEELPE-TCCKLFNLQTLDINECYRLKRLPQGVGSLVNLRHLVVSLNG 672 (984)
Q Consensus 623 ~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~ 672 (984)
+|.|+.+|. .+.++++|++|+|++|......|..+..+++|++|++++|.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 999997765 48899999999999998334457788999999999999884
No 144
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.94 E-value=1.2e-09 Score=108.84 Aligned_cols=100 Identities=24% Similarity=0.326 Sum_probs=59.6
Q ss_pred ccee-cCCCCccccCcccccccCccceEEecCCCccccch-hhccCCcccEEeccccccccccc-ccccCCCCCCeEEec
Q 001998 593 YGED-DGGENTVHDIPREIEKLIHLRSLRLAGLKIEELPE-TCCKLFNLQTLDINECYRLKRLP-QGVGSLVNLRHLVVS 669 (984)
Q Consensus 593 ~Lrv-~l~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lP-~~i~~L~~L~~L~l~ 669 (984)
.|+. ++++|.+..+|..+.++.+|++|+|++|.|+.++. .+.++++|++|+|++|. ++.+| ..+..+++|++|+++
T Consensus 32 ~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 32 DVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR-LRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc-cCEeCHHHhCCCCCCCEEECC
Confidence 3444 55555566666666666666666666666665553 46666666666666665 44444 346666666666666
Q ss_pred cCCCcccCCcc-CCCCCCCCcCCceE
Q 001998 670 LNGDLDYLPKG-VERLTSLRTLREFV 694 (984)
Q Consensus 670 ~~~~l~~~p~~-i~~l~~L~~L~~~~ 694 (984)
+| .+..+|.. +..+++|+.|++..
T Consensus 111 ~N-~l~~~~~~~~~~l~~L~~L~L~~ 135 (193)
T 2wfh_A 111 GN-DISVVPEGAFNDLSALSHLAIGA 135 (193)
T ss_dssp SS-CCCBCCTTTTTTCTTCCEEECCS
T ss_pred CC-CCCeeChhhhhcCccccEEEeCC
Confidence 66 44455543 55566666665543
No 145
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.93 E-value=1.6e-09 Score=106.54 Aligned_cols=119 Identities=27% Similarity=0.379 Sum_probs=58.3
Q ss_pred EEEEecCcccccccccCCCceeEEeccCCCcchhhhHHhhhccccccee-cCCCCccccCccc-ccccCccceEEecCCC
Q 001998 548 SILVLDKVASFPVSIFNAKKLRSLLIHSPLEVLSPVLKGLFDHLTYGED-DGGENTVHDIPRE-IEKLIHLRSLRLAGLK 625 (984)
Q Consensus 548 l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lrv-~l~~~~i~~lp~~-i~~L~~Lr~L~L~~~~ 625 (984)
+....+.+..+|..+. ++|+.|.+.++. +....+..|..++.|+. ++++|.+..+|.. ++.+++|++|+|++|.
T Consensus 12 l~~~~~~l~~~p~~~~--~~l~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 12 IRCNSKGLTSVPTGIP--SSATRLELESNK--LQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp EECCSSCCSSCCTTCC--TTCSEEECCSSC--CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEecCCCCccCCCCCC--CCCcEEEeCCCc--ccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 3444444444443322 456666666554 22222333445555555 5555555554432 3455555555555555
Q ss_pred ccccchh-hccCCcccEEecccccccccccccc-cCCCCCCeEEeccC
Q 001998 626 IEELPET-CCKLFNLQTLDINECYRLKRLPQGV-GSLVNLRHLVVSLN 671 (984)
Q Consensus 626 i~~lp~~-i~~L~~L~~L~L~~~~~l~~lP~~i-~~L~~L~~L~l~~~ 671 (984)
++.+|.. +.++++|++|++++|. ++.+|..+ ..+++|++|++++|
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 88 LQSLPNGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSS
T ss_pred ccccCHHHhhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCC
Confidence 5554443 3455555555555554 44444432 44555555555554
No 146
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.93 E-value=1.9e-09 Score=107.47 Aligned_cols=120 Identities=17% Similarity=0.225 Sum_probs=99.6
Q ss_pred EEEEEecCcccccccccCCCceeEEeccCCCcchhhhHHhhhccccccee-cCCCCccccCc-ccccccCccceEEecCC
Q 001998 547 HSILVLDKVASFPVSIFNAKKLRSLLIHSPLEVLSPVLKGLFDHLTYGED-DGGENTVHDIP-REIEKLIHLRSLRLAGL 624 (984)
Q Consensus 547 ~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lrv-~l~~~~i~~lp-~~i~~L~~Lr~L~L~~~ 624 (984)
.+....+.+..+|..+. ++|+.|++.+|. +.. ++..|..++.|+. ++++|.+..++ ..|.++.+|++|+|++|
T Consensus 14 ~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~--i~~-ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 14 VVRCSNKGLKVLPKGIP--RDVTELYLDGNQ--FTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp EEECTTSCCSSCCSCCC--TTCCEEECCSSC--CCS-CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEEcCCCCCCcCCCCCC--CCCCEEECCCCc--Cch-hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 34455556666665543 689999999987 333 3456899999999 99999999886 56899999999999999
Q ss_pred Cccccch-hhccCCcccEEeccccccccccccc-ccCCCCCCeEEeccCC
Q 001998 625 KIEELPE-TCCKLFNLQTLDINECYRLKRLPQG-VGSLVNLRHLVVSLNG 672 (984)
Q Consensus 625 ~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lP~~-i~~L~~L~~L~l~~~~ 672 (984)
.|+.+|. .+.++++|++|+|++|. ++.+|.. +..+++|++|++++|+
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCC
Confidence 9998876 69999999999999998 8888864 7899999999999884
No 147
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.90 E-value=2e-11 Score=122.71 Aligned_cols=112 Identities=16% Similarity=0.165 Sum_probs=71.8
Q ss_pred cccccccccCCCceeEEeccCCCcchhhhHHhhhccccccee-cCCCCccccCcccccccCccceEEecCCCccccchhh
Q 001998 555 VASFPVSIFNAKKLRSLLIHSPLEVLSPVLKGLFDHLTYGED-DGGENTVHDIPREIEKLIHLRSLRLAGLKIEELPETC 633 (984)
Q Consensus 555 ~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lrv-~l~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i 633 (984)
+..+|..+..+++|++|++.+|. +.. ++ .+..++.|+. ++++|.+..+|..+..+++|++|+|++|.++.+| .+
T Consensus 37 l~~l~~~~~~l~~L~~L~ls~n~--l~~-l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~ 111 (198)
T 1ds9_A 37 IEKMDATLSTLKACKHLALSTNN--IEK-IS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GI 111 (198)
T ss_dssp CCCCHHHHHHTTTCSEEECSEEE--ESC-CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HH
T ss_pred HhhhhHHHhcCCCCCEEECCCCC--Ccc-cc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-cc
Confidence 33444466667777777776664 222 22 3566666666 7777776667766666677777777777776666 56
Q ss_pred ccCCcccEEecccccccccccc--cccCCCCCCeEEeccCC
Q 001998 634 CKLFNLQTLDINECYRLKRLPQ--GVGSLVNLRHLVVSLNG 672 (984)
Q Consensus 634 ~~L~~L~~L~L~~~~~l~~lP~--~i~~L~~L~~L~l~~~~ 672 (984)
+++++|++|++++|. +..+|. .+..+++|++|++++|.
T Consensus 112 ~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 112 EKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp HHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred ccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCc
Confidence 667777777777766 555543 56667777777777663
No 148
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.89 E-value=9.8e-09 Score=111.90 Aligned_cols=186 Identities=14% Similarity=0.134 Sum_probs=115.8
Q ss_pred CcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCC-CeEEEEEecCCCCHHHHHHH
Q 001998 179 SEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNF-EIRVWVCVSDPFDEFSVAKA 257 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~~s~~~~~~~~~~~ 257 (984)
.+++|++..++.+..++.... .+.+.|+|++|+||||+|+.+++... ...+ ...+++..+...... ..++
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~-------~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~-~i~~ 91 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGN-------MPHMIISGMPGIGKTTSVHCLAHELL-GRSYADGVLELNASDDRGID-VVRN 91 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCC-------CCCEEEECSTTSSHHHHHHHHHHHHH-GGGHHHHEEEECTTSCCSHH-HHHT
T ss_pred HHHHCCHHHHHHHHHHHHcCC-------CCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCCEEEecCccccChH-HHHH
Confidence 569999999999999986432 22288999999999999999987311 1111 123444433322221 1122
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHHHh-CCCceEEEEEcCCCCCcCChhhHHHhhcCCCCCcEEEEEccchH-HHhh-cCC
Q 001998 258 IIEELEGSATDLHELNSLLRRIGANI-AGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILLTTRKET-VARM-MES 334 (984)
Q Consensus 258 i~~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~-v~~~-~~~ 334 (984)
+++.+... ...+ .+++.+||+||++.-....++.+...+.....++++|+||+... +... ...
T Consensus 92 ~~~~~~~~--------------~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr 157 (323)
T 1sxj_B 92 QIKHFAQK--------------KLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQ 157 (323)
T ss_dssp HHHHHHHB--------------CCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTT
T ss_pred HHHHHHhc--------------cccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhh
Confidence 22221100 0011 45688999999976544455666666666566788888887643 1111 123
Q ss_pred CCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCChHH-HHHHHH
Q 001998 335 TDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLPLA-AKTIGS 391 (984)
Q Consensus 335 ~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlPLa-i~~~~~ 391 (984)
...+.+.+++.++..+++...+...+.... .+....|++.++|.|.. +..+..
T Consensus 158 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 158 CAILRYSKLSDEDVLKRLLQIIKLEDVKYT----NDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHHHTCCBC----HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ceEEeecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 458999999999999999887642221111 34556799999999954 444443
No 149
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.85 E-value=3.9e-09 Score=115.18 Aligned_cols=268 Identities=14% Similarity=0.060 Sum_probs=145.9
Q ss_pred CCcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHH
Q 001998 178 VSEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKA 257 (984)
Q Consensus 178 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 257 (984)
-.+++|++..++.+..++...... ......+.|+|.+|+|||++|+.+++. ... ..+++..+......+
T Consensus 11 ~~~~ig~~~~~~~l~~~l~~~~~~--~~~~~~vll~G~~GtGKT~la~~i~~~--~~~---~~~~~~~~~~~~~~~---- 79 (324)
T 1hqc_A 11 LDEYIGQERLKQKLRVYLEAAKAR--KEPLEHLLLFGPPGLGKTTLAHVIAHE--LGV---NLRVTSGPAIEKPGD---- 79 (324)
T ss_dssp TTTCCSCHHHHHHHHHHHHHHHHH--CSCCCCCEEECCTTCCCHHHHHHHHHH--HTC---CEEEECTTTCCSHHH----
T ss_pred HHHhhCHHHHHHHHHHHHHHHHcc--CCCCCcEEEECCCCCCHHHHHHHHHHH--hCC---CEEEEeccccCChHH----
Confidence 357999999999988887532100 012346789999999999999999873 222 223444333222211
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHHHhCCCceEEEEEcCCCCCcCChhhHHHhhcCCC------------------CCcEE
Q 001998 258 IIEELEGSATDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGL------------------RGSKI 319 (984)
Q Consensus 258 i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~------------------~gs~i 319 (984)
+...+... ..+..+|+||++..........+...+.... .+.++
T Consensus 80 -----------------l~~~l~~~-~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~ 141 (324)
T 1hqc_A 80 -----------------LAAILANS-LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTL 141 (324)
T ss_dssp -----------------HHHHHTTT-CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEE
T ss_pred -----------------HHHHHHHh-ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEE
Confidence 11111111 1356689999996543333344444433221 23567
Q ss_pred EEEccchH-HHhhc-CC-CCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHHHHhhcc-
Q 001998 320 LLTTRKET-VARMM-ES-TDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLPLAAKTIGSLLQF- 395 (984)
Q Consensus 320 iiTtr~~~-v~~~~-~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~~l~~- 395 (984)
|.||.... +...+ .. ...+.+.+++.++..+++...+........ .+..+.+++.++|.|-.+..+...+..
T Consensus 142 i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~----~~~~~~l~~~~~G~~r~l~~~l~~~~~~ 217 (324)
T 1hqc_A 142 IGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRIT----EEAALEIGRRSRGTMRVAKRLFRRVRDF 217 (324)
T ss_dssp EEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCC----HHHHHHHHHHSCSCHHHHHHHHHHHTTT
T ss_pred EEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 76666432 11111 11 257899999999999999887654332222 345667899999999887766554321
Q ss_pred -----C--CCHHHHHHHHhhhhhhhhhhcccccchhhccccCCChhhhhhhhhcc-cCCCC----------CccChHHHH
Q 001998 396 -----K--RTKEEWQSVLDSEMWQLEEFERGLSAPLFLSYNDLPFEIKRCFSYCA-IFPKG----------SSLKKDELV 457 (984)
Q Consensus 396 -----~--~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl~~~-~fp~~----------~~i~~~~li 457 (984)
. -+.+....++... ...+..++...+..+..+. .|..+ ..+++..+.
T Consensus 218 a~~~~~~~i~~~~~~~~~~~~---------------~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~ 282 (324)
T 1hqc_A 218 AQVAGEEVITRERALEALAAL---------------GLDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLE 282 (324)
T ss_dssp STTTSCSCCCHHHHHHHHHHH---------------TCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHHh---------------cccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHH
Confidence 1 1334444433321 1223344444444443322 12111 113333332
Q ss_pred ----HHHHHcCCcCCC-CCchHHHhHHHHHH-HHhhcccccc
Q 001998 458 ----KLWMAQGYIVPK-GNKEMEVIGLEYFD-CLASRSFYQQ 493 (984)
Q Consensus 458 ----~~Wiaeg~i~~~-~~~~~e~~~~~~~~-~L~~r~l~~~ 493 (984)
++-+..|++... .+....+.|.+||+ ++.+|++||+
T Consensus 283 ~~l~~~~i~~~li~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 283 EVHEPYLIRQGLLKRTPRGRVPTELAYRHLGYPPPVGPLLEP 324 (324)
T ss_dssp HHTHHHHHHTTSEEEETTEEEECHHHHHHTTCCCCC------
T ss_pred HHHhHHHHHhcchhcCCccceecHHHHHHHhcCCCCCCCCCC
Confidence 234567888543 45667788999997 8999999885
No 150
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.85 E-value=4e-09 Score=103.07 Aligned_cols=96 Identities=27% Similarity=0.396 Sum_probs=61.4
Q ss_pred cCCCCccccCcccccccCccceEEecCCCcccc-chhhccCCcccEEeccccccccccccc-ccCCCCCCeEEeccCCCc
Q 001998 597 DGGENTVHDIPREIEKLIHLRSLRLAGLKIEEL-PETCCKLFNLQTLDINECYRLKRLPQG-VGSLVNLRHLVVSLNGDL 674 (984)
Q Consensus 597 ~l~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lP~~-i~~L~~L~~L~l~~~~~l 674 (984)
+++++.+..+|..+. .+|++|+|++|.|+.+ |..+.++++|++|+|++|. ++.+|.. +.++++|++|++++| .+
T Consensus 18 ~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N-~l 93 (174)
T 2r9u_A 18 NCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLNDN-HL 93 (174)
T ss_dssp ECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CC
T ss_pred EeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECCCC-cc
Confidence 666666666666554 6677777777776665 3456667777777777765 6666654 366777777777666 45
Q ss_pred ccCCcc-CCCCCCCCcCCceEec
Q 001998 675 DYLPKG-VERLTSLRTLREFVVS 696 (984)
Q Consensus 675 ~~~p~~-i~~l~~L~~L~~~~~~ 696 (984)
..+|.. +..+++|+.|++..+.
T Consensus 94 ~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 94 KSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp CCCCTTTTTTCTTCSEEECCSSC
T ss_pred ceeCHHHhccccCCCEEEeCCCC
Confidence 555554 6666666666665443
No 151
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.82 E-value=5.6e-09 Score=101.67 Aligned_cols=97 Identities=27% Similarity=0.403 Sum_probs=72.5
Q ss_pred cCCCCccccCcccccccCccceEEecCCCcccc-chhhccCCcccEEeccccccccccccc-ccCCCCCCeEEeccCCCc
Q 001998 597 DGGENTVHDIPREIEKLIHLRSLRLAGLKIEEL-PETCCKLFNLQTLDINECYRLKRLPQG-VGSLVNLRHLVVSLNGDL 674 (984)
Q Consensus 597 ~l~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lP~~-i~~L~~L~~L~l~~~~~l 674 (984)
+++++.+..+|..+. .+|++|+|++|.|+.+ |..+.++++|++|+|++|. ++.+|.. +..+++|++|++++| .+
T Consensus 15 ~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~N-~l 90 (170)
T 3g39_A 15 DCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSLNDN-QL 90 (170)
T ss_dssp ECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CC
T ss_pred EeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCCCEEECCCC-cc
Confidence 777777777887663 7788888888888877 4567888888888888887 7777765 478888888888887 55
Q ss_pred ccCCcc-CCCCCCCCcCCceEecC
Q 001998 675 DYLPKG-VERLTSLRTLREFVVSS 697 (984)
Q Consensus 675 ~~~p~~-i~~l~~L~~L~~~~~~~ 697 (984)
..+|.. +..+++|+.|++..+..
T Consensus 91 ~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 91 KSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CEeCHHHhcCCCCCCEEEeCCCCC
Confidence 666654 77788888887766544
No 152
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.79 E-value=1.4e-08 Score=110.84 Aligned_cols=288 Identities=15% Similarity=0.100 Sum_probs=164.0
Q ss_pred ccceeEEEEEecCcccccccccC-CCceeEEeccCCCcchhhhHHhhhccccccee-cCCCCccccCc-ccccc------
Q 001998 542 QDKLRHSILVLDKVASFPVSIFN-AKKLRSLLIHSPLEVLSPVLKGLFDHLTYGED-DGGENTVHDIP-REIEK------ 612 (984)
Q Consensus 542 ~~~~r~l~l~~~~~~~~~~~~~~-~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lrv-~l~~~~i~~lp-~~i~~------ 612 (984)
..++.+|.+.+.-...-...+.. +++|++|+++++...........+.. ++. .+..+ .+| ..|.+
T Consensus 24 ~~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~---~~~~~~~~~---~I~~~aF~~~~~~~~ 97 (329)
T 3sb4_A 24 ANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPN---GKFYIYMAN---FVPAYAFSNVVNGVT 97 (329)
T ss_dssp HHHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGG---GCCEEECTT---EECTTTTEEEETTEE
T ss_pred hCceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEecCccccccc---ccccccccc---ccCHHHhcccccccc
Confidence 34678888876421110122233 78899999999873210111111222 233 33333 233 34556
Q ss_pred --cCccceEEecCCCccccch-hhccCCcccEEeccccccccccc-ccccCCCCCCeEEeccCCCcccCCccCCCCCCCC
Q 001998 613 --LIHLRSLRLAGLKIEELPE-TCCKLFNLQTLDINECYRLKRLP-QGVGSLVNLRHLVVSLNGDLDYLPKGVERLTSLR 688 (984)
Q Consensus 613 --L~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lP-~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~ 688 (984)
|.+|+.|+|.+ .++.+++ .+.++++|+.|++.+|. +..++ ..+..+.++.++...... . ......+.
T Consensus 98 ~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~-i~~i~~~aF~~~~~l~~l~~~~~~--~-----~~~~~~i~ 168 (329)
T 3sb4_A 98 KGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKT-APNLLPEALADSVTAIFIPLGSSD--A-----YRFKNRWE 168 (329)
T ss_dssp EECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSS-CCEECTTSSCTTTCEEEECTTCTH--H-----HHTSTTTT
T ss_pred cccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCC-ccccchhhhcCCCceEEecCcchh--h-----hhcccccc
Confidence 99999999999 8998876 68899999999999987 55555 445666656555443310 0 00111111
Q ss_pred cCCceEecCCCCcccccccccccccccccCCCeeEEcCCCCCCChhhhhHhcccCCCCCCeEEEEEcCCcccccCcCchh
Q 001998 689 TLREFVVSSTGGKYCTKACKVEGLRQLNHLRGTLRIRGLGNVTDVEEAEKADLEKKKNIVGLELRFDKEEAATEGINEEN 768 (984)
Q Consensus 689 ~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~ 768 (984)
..... .+..| ...+.+. ....+.......-....++..+.+...-....
T Consensus 169 ~~~f~-----------------~~~~L---~~~i~~~---~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~-------- 217 (329)
T 3sb4_A 169 HFAFI-----------------EGEPL---ETTIQVG---AMGKLEDEIMKAGLQPRDINFLTIEGKLDNAD-------- 217 (329)
T ss_dssp TSCEE-----------------ESCCC---EEEEEEC---TTCCHHHHHHHTTCCGGGCSEEEEEECCCHHH--------
T ss_pred ccccc-----------------ccccc---ceeEEec---CCCcHHHHHhhcccCccccceEEEeeeecHHH--------
Confidence 11111 11111 1112211 12223332222223345666677665422110
Q ss_pred hccHHHHhhcCCCCCCCCeEEEeecCCCCCCCch-hhcCCCCcEEEEeCcCCCCcCCC--CCCCCCcc-eeeeccccCce
Q 001998 769 EINHQAISEALRPPPDLEALEIMHYKGQTAFPSW-IVSLNKLKKLKLSSCCKCEIMPP--LGALPSLE-ILQIQRMESVK 844 (984)
Q Consensus 769 ~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~lp~~-l~~l~~L~~L~L~~~~~~~~l~~--l~~Lp~L~-~L~L~~~~~l~ 844 (984)
...+. ..+++|++|+|.+|.... +|.. +.++++|++|+|.++ ...++. |..+++|+ .|.+.+ .++
T Consensus 218 ---~~~l~---~~~~~L~~l~L~~n~i~~-I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~ 286 (329)
T 3sb4_A 218 ---FKLIR---DYMPNLVSLDISKTNATT-IPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVT 286 (329)
T ss_dssp ---HHHHH---HHCTTCCEEECTTBCCCE-ECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCC
T ss_pred ---HHHHH---HhcCCCeEEECCCCCcce-ecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cce
Confidence 01111 125799999999988777 6654 668999999999987 444544 88999999 999977 466
Q ss_pred EecceecCccCCCCCCCCCCccCcccccccccccccCCCCcccccCCCCcccCCcccEEee
Q 001998 845 RVGVEFLGIESFNDYAPSSSLSLTAFPKLKELTLFHLDGCEEWDFGKEDVIIMPQLCYLDI 905 (984)
Q Consensus 845 ~~~~~~~~~~~~~~l~~~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l 905 (984)
.++... ..++++|+.|.+. ......+.+..|..+++|+.|+.
T Consensus 287 ~I~~~a----------------F~~c~~L~~l~l~---~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 287 AIEFGA----------------FMGCDNLRYVLAT---GDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EECTTT----------------TTTCTTEEEEEEC---SSCCCEECTTTTCTTCCCCEEEC
T ss_pred EEchhh----------------hhCCccCCEEEeC---CCccCccchhhhcCCcchhhhcc
Confidence 665321 2456667777653 23334455666788899998864
No 153
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.78 E-value=1.9e-10 Score=115.62 Aligned_cols=104 Identities=23% Similarity=0.222 Sum_probs=75.5
Q ss_pred hhccccccee-cCCCCccccCcccccccCccceEEecCCCccccchhhccCCcccEEecccccccccccccccCCCCCCe
Q 001998 587 LFDHLTYGED-DGGENTVHDIPREIEKLIHLRSLRLAGLKIEELPETCCKLFNLQTLDINECYRLKRLPQGVGSLVNLRH 665 (984)
Q Consensus 587 ~~~~l~~Lrv-~l~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L~~ 665 (984)
.+..++.|+. ++++|.+..+| .+.++++|++|++++|.++.+|..+..+++|++|++++|. +..+| .+..+++|++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~-l~~l~-~~~~l~~L~~ 119 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ-IASLS-GIEKLVNLRV 119 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEE-CCCHH-HHHHHHHSSE
T ss_pred HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCc-CCcCC-ccccCCCCCE
Confidence 5677777777 78877777777 7777888888888888877777777777788888888776 66676 4777788888
Q ss_pred EEeccCCCcccCCc--cCCCCCCCCcCCceE
Q 001998 666 LVVSLNGDLDYLPK--GVERLTSLRTLREFV 694 (984)
Q Consensus 666 L~l~~~~~l~~~p~--~i~~l~~L~~L~~~~ 694 (984)
|++++| .+..+|. .+..+++|+.|++..
T Consensus 120 L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~ 149 (198)
T 1ds9_A 120 LYMSNN-KITNWGEIDKLAALDKLEDLLLAG 149 (198)
T ss_dssp EEESEE-ECCCHHHHHHHTTTTTCSEEEECS
T ss_pred EECCCC-cCCchhHHHHHhcCCCCCEEEecC
Confidence 888777 4444433 466667777666543
No 154
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.77 E-value=5.7e-09 Score=101.98 Aligned_cols=87 Identities=26% Similarity=0.394 Sum_probs=71.7
Q ss_pred cccee-cCCCCccccC-cccccccCccceEEecCCCccccchh-hccCCcccEEeccccccccccccc-ccCCCCCCeEE
Q 001998 592 TYGED-DGGENTVHDI-PREIEKLIHLRSLRLAGLKIEELPET-CCKLFNLQTLDINECYRLKRLPQG-VGSLVNLRHLV 667 (984)
Q Consensus 592 ~~Lrv-~l~~~~i~~l-p~~i~~L~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lP~~-i~~L~~L~~L~ 667 (984)
..|+. ++++|.+..+ |..++++++|++|+|++|.|+.+|.. +.++++|++|+|++|. ++.+|.. +..+++|++|+
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~ 111 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH-LKSIPRGAFDNLKSLTHIY 111 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc-cceeCHHHhccccCCCEEE
Confidence 55666 7788888777 56788999999999999999999876 5889999999999987 8888876 88999999999
Q ss_pred eccCCCcccCCcc
Q 001998 668 VSLNGDLDYLPKG 680 (984)
Q Consensus 668 l~~~~~l~~~p~~ 680 (984)
+++| .+...+..
T Consensus 112 L~~N-~~~c~~~~ 123 (174)
T 2r9u_A 112 LYNN-PWDCECRD 123 (174)
T ss_dssp CCSS-CBCTTBGG
T ss_pred eCCC-Cccccccc
Confidence 9988 44444443
No 155
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.76 E-value=1.3e-08 Score=99.96 Aligned_cols=123 Identities=28% Similarity=0.405 Sum_probs=93.7
Q ss_pred eeEEeccCCCcchhhhHHhhhccccccee-cCCCCccccCccc-ccccCccceEEecCCCccccchh-hccCCcccEEec
Q 001998 568 LRSLLIHSPLEVLSPVLKGLFDHLTYGED-DGGENTVHDIPRE-IEKLIHLRSLRLAGLKIEELPET-CCKLFNLQTLDI 644 (984)
Q Consensus 568 Lr~L~l~~~~~~~~~~~~~~~~~l~~Lrv-~l~~~~i~~lp~~-i~~L~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~L 644 (984)
.+.+.+.++. +..+... -...|+. ++++|.+..+|.. ++.+++|++|+|++|.++.+|.. +.++++|++|++
T Consensus 9 ~~~l~~~~~~--l~~~p~~---~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 83 (177)
T 2o6r_A 9 GTEIRCNSKG--LTSVPTG---IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYL 83 (177)
T ss_dssp TTEEECCSSC--CSSCCTT---CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCEEEecCCC--CccCCCC---CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEEC
Confidence 3556666654 2222222 2356777 8999998888754 68899999999999999988865 689999999999
Q ss_pred cccccccccccc-ccCCCCCCeEEeccCCCcccCCcc-CCCCCCCCcCCceEecC
Q 001998 645 NECYRLKRLPQG-VGSLVNLRHLVVSLNGDLDYLPKG-VERLTSLRTLREFVVSS 697 (984)
Q Consensus 645 ~~~~~l~~lP~~-i~~L~~L~~L~l~~~~~l~~~p~~-i~~l~~L~~L~~~~~~~ 697 (984)
++|. ++.+|.. +..+++|++|++++| .+..+|.. +..+++|+.|++..+..
T Consensus 84 ~~N~-l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 84 HENK-LQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp CSSC-CCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCCC-ccccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCCe
Confidence 9998 7777765 688999999999998 56677765 57789999888766544
No 156
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.71 E-value=2e-07 Score=98.89 Aligned_cols=208 Identities=8% Similarity=-0.047 Sum_probs=125.5
Q ss_pred cccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCccccc---CC--CeEEEEEecCCCCHHHH
Q 001998 180 EVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVIN---NF--EIRVWVCVSDPFDEFSV 254 (984)
Q Consensus 180 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~F--~~~~wv~~s~~~~~~~~ 254 (984)
.+.||++|++++...|...-. ......+.|+|.+|.|||++|+.|++...... .. -..++|++....+...+
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~---~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~ 97 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLM---SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDAL 97 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHH
T ss_pred ccCCHHHHHHHHHHHHHHHhc---CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHH
Confidence 378999999999988865321 23456789999999999999999998532111 11 13567777788889999
Q ss_pred HHHHHHHhcCCCCCc-ccHHHHHHHHHHH--hCCCceEEEEEcCCCCCcCChhhHHHhhc--CC-CCCcEEEEEccchH-
Q 001998 255 AKAIIEELEGSATDL-HELNSLLRRIGAN--IAGQKFFMVLDNLWTDDYRKWEPFRNCLM--NG-LRGSKILLTTRKET- 327 (984)
Q Consensus 255 ~~~i~~~l~~~~~~~-~~~~~~~~~l~~~--l~~kr~LlVlDdvw~~~~~~~~~l~~~l~--~~-~~gs~iiiTtr~~~- 327 (984)
+..|++++.+..... ...+.+...+... -.+++++||||++..-. .-+.+...+. .. .....||.++...+
T Consensus 98 ~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~ 175 (318)
T 3te6_A 98 YEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGHNVT 175 (318)
T ss_dssp HHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCSSCC
T ss_pred HHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecCccc
Confidence 999999997643221 2233333333322 24678999999995432 2233433332 11 11223344443321
Q ss_pred ----H----HhhcCCCCeEeCCCCChHhHHHHHHHHhcCCCC-----------------------------------CCC
Q 001998 328 ----V----ARMMESTDIVYVQGLSEPECWSLFRRFAFSGRT-----------------------------------PLE 364 (984)
Q Consensus 328 ----v----~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~-----------------------------------~~~ 364 (984)
+ ...++ ...+.+.+.+.+|-.+++.+++-.... ...
T Consensus 176 ~~~~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 254 (318)
T 3te6_A 176 IREQINIMPSLKAH-FTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINHKIN 254 (318)
T ss_dssp CHHHHHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--------CTTEEEECEECC
T ss_pred chhhcchhhhccCC-ceEEEeCCCCHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccC
Confidence 1 12221 246899999999999999887632111 013
Q ss_pred chhHHHHHHHHHHhcCCChHHHHHHHHhh
Q 001998 365 CDQLEEIGRGIVRKCKGLPLAAKTIGSLL 393 (984)
Q Consensus 365 ~~~l~~~~~~i~~~~~GlPLai~~~~~~l 393 (984)
+..++-+|++++...|-.-.|+.++-.+.
T Consensus 255 ~~ai~~~A~~vA~~~GD~R~Al~ilr~A~ 283 (318)
T 3te6_A 255 NKITQLIAKNVANVSGSTEKAFKICEAAV 283 (318)
T ss_dssp HHHHHHHHHHHHHHHCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCChHHHHHHHHHHHH
Confidence 34556666666666666666666664443
No 157
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.66 E-value=2.6e-08 Score=96.90 Aligned_cols=80 Identities=28% Similarity=0.382 Sum_probs=67.9
Q ss_pred cccee-cCCCCccccC-cccccccCccceEEecCCCccccchh-hccCCcccEEeccccccccccccc-ccCCCCCCeEE
Q 001998 592 TYGED-DGGENTVHDI-PREIEKLIHLRSLRLAGLKIEELPET-CCKLFNLQTLDINECYRLKRLPQG-VGSLVNLRHLV 667 (984)
Q Consensus 592 ~~Lrv-~l~~~~i~~l-p~~i~~L~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lP~~-i~~L~~L~~L~ 667 (984)
+.|+. ++++|.+..+ |..+.++.+|++|+|++|.|+.+|.. +.++++|++|+|++|. ++.+|.. +.++++|++|+
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~ 108 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ-LKSIPRGAFDNLKSLTHIW 108 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc-cCEeCHHHhcCCCCCCEEE
Confidence 56666 7888888877 56788999999999999999988875 5899999999999997 7788764 88999999999
Q ss_pred eccCC
Q 001998 668 VSLNG 672 (984)
Q Consensus 668 l~~~~ 672 (984)
+++|+
T Consensus 109 L~~N~ 113 (170)
T 3g39_A 109 LLNNP 113 (170)
T ss_dssp CCSSC
T ss_pred eCCCC
Confidence 99883
No 158
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.66 E-value=7.9e-08 Score=104.87 Aligned_cols=183 Identities=16% Similarity=0.123 Sum_probs=114.7
Q ss_pred CcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccC-C-CeEEEEEecCCCCHHHHHH
Q 001998 179 SEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINN-F-EIRVWVCVSDPFDEFSVAK 256 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F-~~~~wv~~s~~~~~~~~~~ 256 (984)
.+++|++..++.+..++.... ...+.++|.+|+||||+|+.+++. .... + ...+.+..+...... ..+
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~~-------~~~~ll~G~~G~GKT~la~~l~~~--l~~~~~~~~~~~~~~~~~~~~~-~~~ 94 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTGS-------MPHLLFAGPPGVGKTTAALALARE--LFGENWRHNFLELNASDERGIN-VIR 94 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC-------CCEEEEESCTTSSHHHHHHHHHHH--HHGGGHHHHEEEEETTCHHHHH-TTH
T ss_pred HHhhCCHHHHHHHHHHHHcCC-------CCeEEEECcCCCCHHHHHHHHHHH--hcCCcccCceEEeeccccCchH-HHH
Confidence 469999999999999886533 223889999999999999999873 2111 1 123333332211100 001
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHHH--h-CCCceEEEEEcCCCCCcCChhhHHHhhcCCCCCcEEEEEccchHH-Hhh-
Q 001998 257 AIIEELEGSATDLHELNSLLRRIGAN--I-AGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILLTTRKETV-ARM- 331 (984)
Q Consensus 257 ~i~~~l~~~~~~~~~~~~~~~~l~~~--l-~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~v-~~~- 331 (984)
......... + .+++.++|+||++.-....+..+...+.....++++|+||....- ...
T Consensus 95 -----------------~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l 157 (327)
T 1iqp_A 95 -----------------EKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPI 157 (327)
T ss_dssp -----------------HHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHH
T ss_pred -----------------HHHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHH
Confidence 111111110 1 267889999999765545566677766666667889998876431 111
Q ss_pred cCCCCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHHHHh
Q 001998 332 MESTDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLPLAAKTIGSL 392 (984)
Q Consensus 332 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~~ 392 (984)
......+.+.+++.++..+++...+...+.... .+..+.|++.++|.|..+..+...
T Consensus 158 ~sr~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~----~~~~~~l~~~~~g~~r~~~~~l~~ 214 (327)
T 1iqp_A 158 QSRCAIFRFRPLRDEDIAKRLRYIAENEGLELT----EEGLQAILYIAEGDMRRAINILQA 214 (327)
T ss_dssp HHTEEEEECCCCCHHHHHHHHHHHHHTTTCEEC----HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HhhCcEEEecCCCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHCCCCHHHHHHHHHH
Confidence 112347899999999999999887643322111 345567889999999876554443
No 159
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.61 E-value=1.8e-06 Score=96.29 Aligned_cols=126 Identities=10% Similarity=0.100 Sum_probs=75.3
Q ss_pred CCCCeEEEeecCCCCCCCchhhcCCCCcEEEEeCcCCC----CcCCC--CCCCCCcceeeeccccCceEecceecCccCC
Q 001998 783 PDLEALEIMHYKGQTAFPSWIVSLNKLKKLKLSSCCKC----EIMPP--LGALPSLEILQIQRMESVKRVGVEFLGIESF 856 (984)
Q Consensus 783 ~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~----~~l~~--l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~~ 856 (984)
.+|+.+.|.. .....-+..+.+|++|+.+.+.++... ..++. |..+++|+.+.|.. .++.++...
T Consensus 248 ~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~a------ 318 (401)
T 4fdw_A 248 SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGL------ 318 (401)
T ss_dssp CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTT------
T ss_pred CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhh------
Confidence 4566666633 223312344557778888888776433 12332 77888888888863 366665321
Q ss_pred CCCCCCCCccCcccccccccccccCCCCcccccCCCCcccCCcccEEeeecCcCCCCCCcC-CCCC-CCcCeEEeccCc
Q 001998 857 NDYAPSSSLSLTAFPKLKELTLFHLDGCEEWDFGKEDVIIMPQLCYLDIRFCRKLKSLPDQ-LLQS-STLEKLRIIRAP 933 (984)
Q Consensus 857 ~~l~~~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l-~~L~~L~i~~c~ 933 (984)
..++++|+.|.+.. + ...+....|..+ +|+.|.+.+|. +..++.. +..+ .++..|.+-...
T Consensus 319 ----------F~~c~~L~~l~lp~--~--l~~I~~~aF~~~-~L~~l~l~~n~-~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 319 ----------LGGNRKVTQLTIPA--N--VTQINFSAFNNT-GIKEVKVEGTT-PPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp ----------TTTCCSCCEEEECT--T--CCEECTTSSSSS-CCCEEEECCSS-CCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred ----------hcCCCCccEEEECc--c--ccEEcHHhCCCC-CCCEEEEcCCC-CcccccccccCCCCCccEEEeCHHH
Confidence 23456677666632 1 233455667778 99999999885 5555443 4445 367888876643
No 160
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.55 E-value=4.7e-07 Score=100.69 Aligned_cols=195 Identities=14% Similarity=0.193 Sum_probs=115.1
Q ss_pred CcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHH
Q 001998 179 SEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAI 258 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 258 (984)
.+++|++..++.+...+.... ....+.|+|..|+||||+|+.+.+.......+. ...+........+
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~------~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~-------~~~~~~~~~~~~~ 82 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGR------IHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT-------ATPCGVCDNCREI 82 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTC------CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC-------SSCCSSSHHHHHH
T ss_pred hhccCcHHHHHHHHHHHHhCC------CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC-------CCCCcccHHHHHH
Confidence 469999999999999986543 234678999999999999999886321111110 0000000011111
Q ss_pred HHH-------hcCC-CCCcccHHHHHHHHHHH-hCCCceEEEEEcCCCCCcCChhhHHHhhcCCCCCcEEEEEccchH-H
Q 001998 259 IEE-------LEGS-ATDLHELNSLLRRIGAN-IAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILLTTRKET-V 328 (984)
Q Consensus 259 ~~~-------l~~~-~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~-v 328 (984)
... +... .....+...+...+... ..+++.+||+||+..-+....+.+...+.....+..+|++|.... +
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l 162 (373)
T 1jr3_A 83 EQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 162 (373)
T ss_dssp HTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGS
T ss_pred hccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 100 0000 01112333333332211 235678999999966554556667777766556777887776533 1
Q ss_pred Hh-hcCCCCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHHH
Q 001998 329 AR-MMESTDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLPLAAKTIG 390 (984)
Q Consensus 329 ~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~ 390 (984)
.. .......+.+.+++.++..+++.+.+...+.... .+....|++.++|.|..+..+.
T Consensus 163 ~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~----~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 163 PVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE----PRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp CHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBC----HHHHHHHHHHSSSCHHHHHHHH
T ss_pred cHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHCCCCHHHHHHHH
Confidence 11 1223468899999999999999876532221111 3445679999999998876654
No 161
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.53 E-value=1.1e-07 Score=104.80 Aligned_cols=101 Identities=17% Similarity=0.103 Sum_probs=77.3
Q ss_pred eecCCCC-ccccCcccccccCccceEEecC-CCccccc-hhhccCCcccEEeccccccccccc-ccccCCCCCCeEEecc
Q 001998 595 EDDGGEN-TVHDIPREIEKLIHLRSLRLAG-LKIEELP-ETCCKLFNLQTLDINECYRLKRLP-QGVGSLVNLRHLVVSL 670 (984)
Q Consensus 595 rv~l~~~-~i~~lp~~i~~L~~Lr~L~L~~-~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lP-~~i~~L~~L~~L~l~~ 670 (984)
.++++++ .+..+|. +..+.+|++|+|++ |.|+.+| ..+++|++|++|+|++|. ++.+| ..+.+|++|++|++++
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCCC
Confidence 3467776 7888888 88889999999986 8888887 468889999999999987 66655 4578899999999988
Q ss_pred CCCcccCCccCCCCCCCCcCCceEecCC
Q 001998 671 NGDLDYLPKGVERLTSLRTLREFVVSST 698 (984)
Q Consensus 671 ~~~l~~~p~~i~~l~~L~~L~~~~~~~~ 698 (984)
| .+..+|..+.....|+.|++..+...
T Consensus 90 N-~l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 N-ALESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp S-CCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred C-ccceeCHHHcccCCceEEEeeCCCcc
Confidence 8 66777766444334888777655443
No 162
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.44 E-value=8.2e-07 Score=96.31 Aligned_cols=182 Identities=14% Similarity=0.078 Sum_probs=111.0
Q ss_pred CcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCC-eEEEEEecCCCCHHHHHHH
Q 001998 179 SEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFE-IRVWVCVSDPFDEFSVAKA 257 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~s~~~~~~~~~~~ 257 (984)
.+++|++..++.+.+++.... ...+.++|.+|+||||+|+.+++... ...+. ..+.++.+.....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~-------~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~------ 82 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERKN-------IPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGI------ 82 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTTC-------CCCEEEESSSSSSHHHHHHHHHHHHH-TTCHHHHCEEEETTSTTCT------
T ss_pred HHHhCCHHHHHHHHHHHhCCC-------CCeEEEECcCCcCHHHHHHHHHHHhc-CCcccCCeEEEeCccccCh------
Confidence 469999999999998885432 22378999999999999999887310 11111 1223333321110
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHHH--h-CCCceEEEEEcCCCCCcCChhhHHHhhcCCCCCcEEEEEccchH-HHhh-c
Q 001998 258 IIEELEGSATDLHELNSLLRRIGAN--I-AGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILLTTRKET-VARM-M 332 (984)
Q Consensus 258 i~~~l~~~~~~~~~~~~~~~~l~~~--l-~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~-v~~~-~ 332 (984)
.........+... + .+++-++|+|++..-.....+.+...+.....+.++|+||.... +... .
T Consensus 83 ------------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~ 150 (319)
T 2chq_A 83 ------------DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQ 150 (319)
T ss_dssp ------------TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHH
T ss_pred ------------HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHH
Confidence 0111111111111 1 25678999999965443444556666655556778888887643 1111 1
Q ss_pred CCCCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHHH
Q 001998 333 ESTDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLPLAAKTIG 390 (984)
Q Consensus 333 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~ 390 (984)
.....+.+.+++.++..+++...+...+.... .+....+++.++|.+-.+....
T Consensus 151 sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~----~~~l~~l~~~~~G~~r~~~~~l 204 (319)
T 2chq_A 151 SRCAVFRFKPVPKEAMKKRLLEICEKEGVKIT----EDGLEALIYISGGDFRKAINAL 204 (319)
T ss_dssp TTCEEEECCCCCHHHHHHHHHHHHHTTCCCBC----HHHHHHHHHTTTTCHHHHHHHH
T ss_pred hhCeEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 22458999999999999999887654332222 3445668899999997654443
No 163
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.37 E-value=2e-06 Score=85.38 Aligned_cols=151 Identities=17% Similarity=0.159 Sum_probs=83.1
Q ss_pred CcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccc---c--CCCeEEEEEecCCCCHHH
Q 001998 179 SEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVI---N--NFEIRVWVCVSDPFDEFS 253 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~--~F~~~~wv~~s~~~~~~~ 253 (984)
..++||+++++++.+.+... ..+.+.|+|.+|+|||++|+.+++...-. . .....+++.++ .
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~-------~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 88 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRR-------TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMG------A 88 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSS-------SSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHH------H
T ss_pred cccccchHHHHHHHHHHhcC-------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHH------H
Confidence 46899999999999998642 23457899999999999999998732110 0 12234444321 1
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHHh--CCCceEEEEEcCCCCC--------cCChhhHHHhhcCCCCCcEEEEEc
Q 001998 254 VAKAIIEELEGSATDLHELNSLLRRIGANI--AGQKFFMVLDNLWTDD--------YRKWEPFRNCLMNGLRGSKILLTT 323 (984)
Q Consensus 254 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~kr~LlVlDdvw~~~--------~~~~~~l~~~l~~~~~gs~iiiTt 323 (984)
.. ... ............+.+.+ .+++.+|||||+.... ......+...+.. .+..+|.||
T Consensus 89 ~~-------~~~-~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~--~~~~~i~~~ 158 (195)
T 1jbk_A 89 LV-------AGA-KYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR--GELHCVGAT 158 (195)
T ss_dssp HH-------TTT-CSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHT--TSCCEEEEE
T ss_pred Hh-------ccC-CccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhcc--CCeEEEEeC
Confidence 11 000 01111111111221111 4667899999996532 1223334433332 234567766
Q ss_pred cchHHHh-------hcCCCCeEeCCCCChHhHHHHH
Q 001998 324 RKETVAR-------MMESTDIVYVQGLSEPECWSLF 352 (984)
Q Consensus 324 r~~~v~~-------~~~~~~~~~l~~L~~~~~~~lf 352 (984)
....... .......+.+.+++.++..+++
T Consensus 159 ~~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 159 TLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp CHHHHHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred CHHHHHHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 6544221 1122236888999888876653
No 164
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.34 E-value=8.8e-06 Score=90.64 Aligned_cols=256 Identities=14% Similarity=0.183 Sum_probs=132.8
Q ss_pred CceeEEeccCCCcchhhhHHhhhccccccee-cCCCCccccCcc-cccccCccceEEecCCCccccch-hhccCCcccEE
Q 001998 566 KKLRSLLIHSPLEVLSPVLKGLFDHLTYGED-DGGENTVHDIPR-EIEKLIHLRSLRLAGLKIEELPE-TCCKLFNLQTL 642 (984)
Q Consensus 566 ~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lrv-~l~~~~i~~lp~-~i~~L~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L 642 (984)
..+..+.+...- ..+....|.++ .|+. .+..+ +..++. +|.+ .+|+.+.+.. .++.++. .+.++.+|+.+
T Consensus 113 ~~l~~i~ip~~i---~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 113 KGYNEIILPNSV---KSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp SSCSEEECCTTC---CEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred CCccEEEECCcc---CEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCee
Confidence 455555555432 22233445554 3444 55544 555543 3444 3677777765 5666653 67777778888
Q ss_pred ecccccccccccccccCCCCCCeEEeccCCCcccCCcc-CCCCCCCCcCCceEecCCCCcccccccccccccccccCCCe
Q 001998 643 DINECYRLKRLPQGVGSLVNLRHLVVSLNGDLDYLPKG-VERLTSLRTLREFVVSSTGGKYCTKACKVEGLRQLNHLRGT 721 (984)
Q Consensus 643 ~L~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~~p~~-i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~ 721 (984)
++.+|. +..+|...-...+|+.+.+..+ +..++.. +.++++|+.+.+... +. .
T Consensus 186 ~l~~n~-l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~-------------------l~----~ 239 (401)
T 4fdw_A 186 DLSKTK-ITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPEN-------------------VS----T 239 (401)
T ss_dssp ECTTSC-CSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTT-------------------CC----E
T ss_pred ecCCCc-ceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCC-------------------cc----C
Confidence 887765 7777765555677777777643 4555433 556666666643210 00 0
Q ss_pred eEEcCCCCCCChhhhhHhcccCCCCCCeEEEEEcCCcccccCcCchhhccHHHHhhcCCCCCCCCeEEEeecCCC-----
Q 001998 722 LRIRGLGNVTDVEEAEKADLEKKKNIVGLELRFDKEEAATEGINEENEINHQAISEALRPPPDLEALEIMHYKGQ----- 796 (984)
Q Consensus 722 L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~----- 796 (984)
+. ...+.+ .+|+.+.+..+ .... -...+..+++|+.+.+.++...
T Consensus 240 I~--------------~~aF~~-~~L~~i~lp~~-i~~I--------------~~~aF~~c~~L~~l~l~~~~~~~~~~~ 289 (401)
T 4fdw_A 240 IG--------------QEAFRE-SGITTVKLPNG-VTNI--------------ASRAFYYCPELAEVTTYGSTFNDDPEA 289 (401)
T ss_dssp EC--------------TTTTTT-CCCSEEEEETT-CCEE--------------CTTTTTTCTTCCEEEEESSCCCCCTTC
T ss_pred cc--------------cccccc-CCccEEEeCCC-ccEE--------------ChhHhhCCCCCCEEEeCCccccCCccc
Confidence 00 011112 34555555211 1110 0234555667777777665543
Q ss_pred CCCCchhhcCCCCcEEEEeCcCCCCcCCC--CCCCCCcceeeeccccCceEecceecCccCCCCCCCCCCccCccccccc
Q 001998 797 TAFPSWIVSLNKLKKLKLSSCCKCEIMPP--LGALPSLEILQIQRMESVKRVGVEFLGIESFNDYAPSSSLSLTAFPKLK 874 (984)
Q Consensus 797 ~~lp~~l~~l~~L~~L~L~~~~~~~~l~~--l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~f~~L~ 874 (984)
..-+..+.+|++|+.+.|.++ ...++. |.++++|+.+.|..+ +..++... ..++ +|+
T Consensus 290 ~I~~~aF~~c~~L~~l~l~~~--i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~a----------------F~~~-~L~ 348 (401)
T 4fdw_A 290 MIHPYCLEGCPKLARFEIPES--IRILGQGLLGGNRKVTQLTIPAN--VTQINFSA----------------FNNT-GIK 348 (401)
T ss_dssp EECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCCSCCEEEECTT--CCEECTTS----------------SSSS-CCC
T ss_pred EECHHHhhCCccCCeEEeCCc--eEEEhhhhhcCCCCccEEEECcc--ccEEcHHh----------------CCCC-CCC
Confidence 112334557777777777643 333333 777777887777543 55554321 2234 566
Q ss_pred ccccccCCCCcccccCCCCcccCC-cccEEeeecC
Q 001998 875 ELTLFHLDGCEEWDFGKEDVIIMP-QLCYLDIRFC 908 (984)
Q Consensus 875 ~L~l~~l~~l~~~~~~~~~~~~l~-~L~~L~l~~c 908 (984)
.|.+.+. ....+....+..++ +++.|++-.+
T Consensus 349 ~l~l~~n---~~~~l~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 349 EVKVEGT---TPPQVFEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp EEEECCS---SCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred EEEEcCC---CCcccccccccCCCCCccEEEeCHH
Confidence 6665442 22223333344453 5666666554
No 165
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.29 E-value=1.3e-06 Score=90.28 Aligned_cols=173 Identities=14% Similarity=0.069 Sum_probs=100.4
Q ss_pred Cccccc---HHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHH
Q 001998 179 SEVRGR---DEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVA 255 (984)
Q Consensus 179 ~~~~Gr---~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 255 (984)
.+++|. +..++.+..+.... ..+.+.|+|.+|+||||||+.+++. .......+.|+.++.-.+.
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~ll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~~~~~~---- 94 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGD-------GVQAIYLWGPVKSGRTHLIHAACAR--ANELERRSFYIPLGIHASI---- 94 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTC-------SCSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEGGGGGGS----
T ss_pred hhccCCCCCHHHHHHHHHHHhCC-------CCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEHHHHHHH----
Confidence 456763 35566666665432 2456889999999999999999873 3333345667765431110
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHHHhCCCceEEEEEcCCCCCcCC--hhhHHHhhcCC-CCC-cEEEEEccchH----
Q 001998 256 KAIIEELEGSATDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDYRK--WEPFRNCLMNG-LRG-SKILLTTRKET---- 327 (984)
Q Consensus 256 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~--~~~l~~~l~~~-~~g-s~iiiTtr~~~---- 327 (984)
+ ... + +.+ .++-+||+||++...... .+.+...+... ..+ .++|+||+...
T Consensus 95 ------~----------~~~---~-~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~ 153 (242)
T 3bos_A 95 ------S----------TAL---L-EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAG 153 (242)
T ss_dssp ------C----------GGG---G-TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTT
T ss_pred ------H----------HHH---H-Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHH
Confidence 0 000 0 011 346799999996543322 23344333221 112 25777776421
Q ss_pred -----HHhhcCCCCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHH
Q 001998 328 -----VARMMESTDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLPLAAKTI 389 (984)
Q Consensus 328 -----v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~ 389 (984)
+...+.....+.+.+++.++..+++...+...+.... .+..+.|++.++|.+-.+..+
T Consensus 154 ~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~l~~~~~g~~r~l~~~ 216 (242)
T 3bos_A 154 FVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLP----EDVGRFLLNRMARDLRTLFDV 216 (242)
T ss_dssp CCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCC----HHHHHHHHHHTTTCHHHHHHH
T ss_pred HhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHccCCHHHHHHH
Confidence 2222222368899999999999999887643222111 345567888999988666544
No 166
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.22 E-value=2e-05 Score=87.98 Aligned_cols=305 Identities=13% Similarity=0.074 Sum_probs=155.5
Q ss_pred ccccCCCceeEEeccCCCcchhhhHHhhhccccccee-cCCCCccccCc-ccccccCccceEEecCCCccccch-hhccC
Q 001998 560 VSIFNAKKLRSLLIHSPLEVLSPVLKGLFDHLTYGED-DGGENTVHDIP-REIEKLIHLRSLRLAGLKIEELPE-TCCKL 636 (984)
Q Consensus 560 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lrv-~l~~~~i~~lp-~~i~~L~~Lr~L~L~~~~i~~lp~-~i~~L 636 (984)
.+|.+|.+|+++.+..+ +..+...+|.++..|+. ++..+ +..++ ..+.++..|+.+.+..+ +..++. .+.+.
T Consensus 65 ~AF~~c~~L~~i~lp~~---i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~ 139 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPST---VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGC 139 (394)
T ss_dssp TTTTTCTTEEEEECCTT---CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTC
T ss_pred HHhhCCCCceEEEeCCC---ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecc
Confidence 45777888888888654 33333456778888877 77644 55554 34667777777766543 333332 34444
Q ss_pred CcccEEeccccccccccc-ccccCCCCCCeEEeccCCCcccCCcc-CCCCCCCCcCCceEecCCCCcccccccccccccc
Q 001998 637 FNLQTLDINECYRLKRLP-QGVGSLVNLRHLVVSLNGDLDYLPKG-VERLTSLRTLREFVVSSTGGKYCTKACKVEGLRQ 714 (984)
Q Consensus 637 ~~L~~L~L~~~~~l~~lP-~~i~~L~~L~~L~l~~~~~l~~~p~~-i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~ 714 (984)
..+........ ..+. ..+.++++|+.+.+..+ +..++.+ +..+++|+.+.+...-.. .....+..+..
T Consensus 140 ~~~~~~~~~~~---~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~~~~-----I~~~~F~~~~~ 209 (394)
T 4fs7_A 140 DFKEITIPEGV---TVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRNLKI-----IRDYCFAECIL 209 (394)
T ss_dssp CCSEEECCTTC---CEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTTCCE-----ECTTTTTTCTT
T ss_pred cccccccCccc---cccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCCceE-----eCchhhccccc
Confidence 33333332222 2222 34566777777777543 2334332 556666766654221000 00112222222
Q ss_pred cccCCCeeEEcCCCCCCChhhhhHhcccCCCCCCeEEEEEcCCcccccCcCchhhccHHHHhhcCCCCCCCCeEEEeecC
Q 001998 715 LNHLRGTLRIRGLGNVTDVEEAEKADLEKKKNIVGLELRFDKEEAATEGINEENEINHQAISEALRPPPDLEALEIMHYK 794 (984)
Q Consensus 715 L~~L~~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~ 794 (984)
|..+. +.. ...... ...-.+.+|+.+.+..... .. -...+..+..|+.+.+..+.
T Consensus 210 L~~i~----~~~--~~~~i~----~~~~~~~~l~~i~ip~~~~-~i--------------~~~~f~~~~~l~~~~~~~~~ 264 (394)
T 4fs7_A 210 LENME----FPN--SLYYLG----DFALSKTGVKNIIIPDSFT-EL--------------GKSVFYGCTDLESISIQNNK 264 (394)
T ss_dssp CCBCC----CCT--TCCEEC----TTTTTTCCCCEEEECTTCC-EE--------------CSSTTTTCSSCCEEEECCTT
T ss_pred cceee----cCC--CceEee----hhhcccCCCceEEECCCce-ec--------------ccccccccccceeEEcCCCc
Confidence 22111 000 000000 1112334566665532110 00 01234556677777776553
Q ss_pred CCCCCCchhhcCCCCcEEEEeCcCCCCcCCCCCCCCCcceeeeccccCceEecceecCccCCCCCCCCCCccCccccccc
Q 001998 795 GQTAFPSWIVSLNKLKKLKLSSCCKCEIMPPLGALPSLEILQIQRMESVKRVGVEFLGIESFNDYAPSSSLSLTAFPKLK 874 (984)
Q Consensus 795 ~~~~lp~~l~~l~~L~~L~L~~~~~~~~l~~l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~f~~L~ 874 (984)
..- -...+..+.+|+.+.+...... -..+..+.+|+.+.+..+ ++.++... ..++.+|+
T Consensus 265 ~~i-~~~~F~~~~~l~~~~~~~~~i~--~~~F~~~~~L~~i~l~~~--i~~I~~~a----------------F~~c~~L~ 323 (394)
T 4fs7_A 265 LRI-GGSLFYNCSGLKKVIYGSVIVP--EKTFYGCSSLTEVKLLDS--VKFIGEEA----------------FESCTSLV 323 (394)
T ss_dssp CEE-CSCTTTTCTTCCEEEECSSEEC--TTTTTTCTTCCEEEECTT--CCEECTTT----------------TTTCTTCC
T ss_pred cee-eccccccccccceeccCceeec--cccccccccccccccccc--cceechhh----------------hcCCCCCC
Confidence 321 2334556777777776543211 112667778888877542 55554321 23455666
Q ss_pred ccccccCCCCcccccCCCCcccCCcccEEeeecCcCCCCCCc-CCCCCCCcCeEEecc
Q 001998 875 ELTLFHLDGCEEWDFGKEDVIIMPQLCYLDIRFCRKLKSLPD-QLLQSSTLEKLRIIR 931 (984)
Q Consensus 875 ~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~i~~ 931 (984)
++.+.+ + ...++..+|..+++|+.+.|..+ +..++. .+.+|++|+.+++..
T Consensus 324 ~i~lp~--~--v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 324 SIDLPY--L--VEEIGKRSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp EECCCT--T--CCEECTTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEEG
T ss_pred EEEeCC--c--ccEEhHHhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEECC
Confidence 666532 1 22345556777888888888654 555544 455778888888754
No 167
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.20 E-value=1.7e-06 Score=95.06 Aligned_cols=84 Identities=17% Similarity=0.117 Sum_probs=64.2
Q ss_pred hccccccee-cCCC-CccccCc-ccccccCccceEEecCCCccccch-hhccCCcccEEecccccccccccccccCCCCC
Q 001998 588 FDHLTYGED-DGGE-NTVHDIP-REIEKLIHLRSLRLAGLKIEELPE-TCCKLFNLQTLDINECYRLKRLPQGVGSLVNL 663 (984)
Q Consensus 588 ~~~l~~Lrv-~l~~-~~i~~lp-~~i~~L~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~~L 663 (984)
+..+..|+. ++++ |.+..+| ..|++|.+|++|+|++|.|+.+|+ .+.+|++|++|+|++|. +..+|..+....+|
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~L 105 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA-LESLSWKTVQGLSL 105 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC-CSCCCSTTTCSCCC
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc-cceeCHHHcccCCc
Confidence 556666666 7764 6777776 568888999999999998887765 67889999999999887 77888665544448
Q ss_pred CeEEeccCC
Q 001998 664 RHLVVSLNG 672 (984)
Q Consensus 664 ~~L~l~~~~ 672 (984)
++|++.+|.
T Consensus 106 ~~l~l~~N~ 114 (347)
T 2ifg_A 106 QELVLSGNP 114 (347)
T ss_dssp CEEECCSSC
T ss_pred eEEEeeCCC
Confidence 999988873
No 168
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.17 E-value=2.1e-05 Score=88.63 Aligned_cols=160 Identities=13% Similarity=0.102 Sum_probs=95.9
Q ss_pred eEEEEEEecCcchHHHHHHHHhcCcccccCC--CeEEEEEecCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhC
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYNDNDVINNF--EIRVWVCVSDPFDEFSVAKAIIEELEGSATDLHELNSLLRRIGANIA 284 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 284 (984)
...+.|+|.+|+||||||+.+++. ....+ ..+++++.. .+..++...+... ... .+.+.+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~--l~~~~~~~~v~~v~~~------~~~~~~~~~~~~~-----~~~----~~~~~~~ 192 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITSE------KFLNDLVDSMKEG-----KLN----EFREKYR 192 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHH--HHHHCCSSCEEEEEHH------HHHHHHHHHHHTT-----CHH----HHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEeeHH------HHHHHHHHHHHcc-----cHH----HHHHHhc
Confidence 456889999999999999999983 33332 234555433 3444555544332 111 2333334
Q ss_pred CCceEEEEEcCCCCCc--CChhhHHHhhcC-CCCCcEEEEEccch---------HHHhhcCCCCeEeCCCCChHhHHHHH
Q 001998 285 GQKFFMVLDNLWTDDY--RKWEPFRNCLMN-GLRGSKILLTTRKE---------TVARMMESTDIVYVQGLSEPECWSLF 352 (984)
Q Consensus 285 ~kr~LlVlDdvw~~~~--~~~~~l~~~l~~-~~~gs~iiiTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf 352 (984)
.+.-+|++||+..-.. ..-+.+...+.. ...|..||+||.+. .+...+.....+.+++++.++..+++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL 272 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIA 272 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHH
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHH
Confidence 4677999999965322 112234443322 23467888888762 23333433467889999999999999
Q ss_pred HHHhcCCCCCCCchhHHHHHHHHHHhcCCChHHHH
Q 001998 353 RRFAFSGRTPLECDQLEEIGRGIVRKCKGLPLAAK 387 (984)
Q Consensus 353 ~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~ 387 (984)
.+.+...+....+ ++...|++.+.|.+-.+.
T Consensus 273 ~~~~~~~~~~i~~----e~l~~la~~~~gn~R~l~ 303 (440)
T 2z4s_A 273 RKMLEIEHGELPE----EVLNFVAENVDDNLRRLR 303 (440)
T ss_dssp HHHHHHHTCCCCT----THHHHHHHHCCSCHHHHH
T ss_pred HHHHHHcCCCCCH----HHHHHHHHhcCCCHHHHH
Confidence 8876422211221 234558888888886543
No 169
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.16 E-value=8.2e-06 Score=89.82 Aligned_cols=196 Identities=12% Similarity=0.132 Sum_probs=106.3
Q ss_pred CcccccHHHHHHHHHHH-hcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcC---ccccc-CCCe--------------
Q 001998 179 SEVRGRDEEMRTLKSML-LCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYND---NDVIN-NFEI-------------- 239 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L-~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~---~~~~~-~F~~-------------- 239 (984)
.+++|.+..++.+..++ .... ... +.|+|..|+||||+|+.+.+. +.... .++.
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~~------~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~ 86 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPRD------LPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELN 86 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTTC------CCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------C
T ss_pred HHhcCCHHHHHHHHHHHhhCCC------CCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceee
Confidence 56899999999988887 3222 223 889999999999999987762 11000 0110
Q ss_pred ------EEEEEecCCC-CHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCceEEEEEcCCCCCcCChhhHHHhhcC
Q 001998 240 ------RVWVCVSDPF-DEFSVAKAIIEELEGSATDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDYRKWEPFRNCLMN 312 (984)
Q Consensus 240 ------~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~ 312 (984)
.+.+..+... ......+++++.+..... ..... .+.. +.+++-++|+|++..-+......+...+..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~-~ls~-l~~~~~vlilDE~~~L~~~~~~~L~~~le~ 160 (354)
T 1sxj_E 87 VVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQ----VDFQD-SKDG-LAHRYKCVIINEANSLTKDAQAALRRTMEK 160 (354)
T ss_dssp CEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------------CCEEEEEECTTSSCHHHHHHHHHHHHH
T ss_pred eecccceEEecHhhcCCcchHHHHHHHHHHHHhcc----ccccc-cccc-cCCCCeEEEEeCccccCHHHHHHHHHHHHh
Confidence 1111111100 000012223332221100 00000 0000 234667999999976554445556666655
Q ss_pred CCCCcEEEEEccchH-HHhh-cCCCCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHHH
Q 001998 313 GLRGSKILLTTRKET-VARM-MESTDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLPLAAKTIG 390 (984)
Q Consensus 313 ~~~gs~iiiTtr~~~-v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~ 390 (984)
...+..+|++|.+.. +... ......+++.+++.++..+++...+...+..... .+....|++.++|.+-.+..+.
T Consensus 161 ~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 161 YSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLET---KDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp STTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECC---SHHHHHHHHHHTTCHHHHHHHH
T ss_pred hcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCc---HHHHHHHHHHcCCCHHHHHHHH
Confidence 455678888887632 2111 1234688999999999999998776432211110 2344568899999887665444
No 170
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.15 E-value=4e-05 Score=83.61 Aligned_cols=178 Identities=12% Similarity=0.098 Sum_probs=105.0
Q ss_pred CCcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHH
Q 001998 178 VSEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKA 257 (984)
Q Consensus 178 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 257 (984)
-.+++|++..++.+..++...... ......+.|+|.+|+|||++|+.+++. ....| +.++.+....
T Consensus 28 ~~~iiG~~~~~~~l~~~l~~~~~~--~~~~~~vll~G~~GtGKT~la~~ia~~--~~~~~---~~~~~~~~~~------- 93 (338)
T 3pfi_A 28 FDGYIGQESIKKNLNVFIAAAKKR--NECLDHILFSGPAGLGKTTLANIISYE--MSANI---KTTAAPMIEK------- 93 (338)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHT--TSCCCCEEEECSTTSSHHHHHHHHHHH--TTCCE---EEEEGGGCCS-------
T ss_pred HHHhCChHHHHHHHHHHHHHHHhc--CCCCCeEEEECcCCCCHHHHHHHHHHH--hCCCe---EEecchhccc-------
Confidence 457999999999999888643100 113345789999999999999999873 32222 2333322111
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHHHhCCCceEEEEEcCCCCCcCChhhHHHhhcCCC------------------CCcEE
Q 001998 258 IIEELEGSATDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGL------------------RGSKI 319 (984)
Q Consensus 258 i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~------------------~gs~i 319 (984)
.......+.. ..+..+|+||++..........+...+.... ++..+
T Consensus 94 --------------~~~~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (338)
T 3pfi_A 94 --------------SGDLAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTL 157 (338)
T ss_dssp --------------HHHHHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEE
T ss_pred --------------hhHHHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEE
Confidence 1111111211 2456789999996544333444554444321 12456
Q ss_pred EEEccchHH-Hhh-cCC-CCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHH
Q 001998 320 LLTTRKETV-ARM-MES-TDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLPLAAKTI 389 (984)
Q Consensus 320 iiTtr~~~v-~~~-~~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~ 389 (984)
|.||..... ... ... ...+.+.+++.++...++.+.+...... --.+..+.|++.+.|.|-.+..+
T Consensus 158 i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~----~~~~~~~~l~~~~~G~~r~l~~~ 226 (338)
T 3pfi_A 158 IGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKT----CEEKAALEIAKRSRSTPRIALRL 226 (338)
T ss_dssp EEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCE----ECHHHHHHHHHTTTTCHHHHHHH
T ss_pred EEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCC----CCHHHHHHHHHHHCcCHHHHHHH
Confidence 666665321 111 111 3578999999999999998776432211 12345567888999999555443
No 171
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.13 E-value=1.2e-05 Score=88.33 Aligned_cols=195 Identities=12% Similarity=0.043 Sum_probs=112.6
Q ss_pred CcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCC-eEEEEEecCCCCHHHHHHH
Q 001998 179 SEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFE-IRVWVCVSDPFDEFSVAKA 257 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~s~~~~~~~~~~~ 257 (984)
.+++|++..++.+..++.... ...+.++|..|+||||+|+.+.+.......+. ..+.+..+....... +++
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~-------~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~ 108 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSAN-------LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISI-VRE 108 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTT-------CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHH-HTT
T ss_pred HHhhCCHHHHHHHHHHHhcCC-------CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHH-HHH
Confidence 578999999999999886432 12278999999999999999987421111111 233344443322222 222
Q ss_pred HHHHhcCC-CCCcccHHHHHHHHHHHhCCCceEEEEEcCCCCCcCChhhHHHhhcCCCCCcEEEEEccchH-HHhh-cCC
Q 001998 258 IIEELEGS-ATDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILLTTRKET-VARM-MES 334 (984)
Q Consensus 258 i~~~l~~~-~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~-v~~~-~~~ 334 (984)
.+..+... ....... .....-.+++-+|++|++..-.......+...+.......++|++|.... +... ...
T Consensus 109 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR 183 (353)
T 1sxj_D 109 KVKNFARLTVSKPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQ 183 (353)
T ss_dssp HHHHHHHSCCCCCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHH
T ss_pred HHHHHhhhcccccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhcc
Confidence 22222110 0000000 00011124556999999865444444556666655555677888775532 1111 112
Q ss_pred CCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHHH
Q 001998 335 TDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLPLAAKTIG 390 (984)
Q Consensus 335 ~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~ 390 (984)
...+.+.+++.++....+...+...+.... .+..+.|++.++|.|-.+..+.
T Consensus 184 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~----~~~l~~l~~~~~G~~r~~~~~l 235 (353)
T 1sxj_D 184 CSKFRFKALDASNAIDRLRFISEQENVKCD----DGVLERILDISAGDLRRGITLL 235 (353)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHTTTCCCC----HHHHHHHHHHTSSCHHHHHHHH
T ss_pred CceEEeCCCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 347889999999999999887643322122 3456679999999987654443
No 172
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.12 E-value=3.8e-05 Score=81.54 Aligned_cols=186 Identities=13% Similarity=0.105 Sum_probs=101.0
Q ss_pred cCCcccccHHHHHHHHHHHhcCCCC------CCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCC
Q 001998 177 DVSEVRGRDEEMRTLKSMLLCQGSD------QQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFD 250 (984)
Q Consensus 177 ~~~~~~Gr~~~~~~l~~~L~~~~~~------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~ 250 (984)
.-.+++|.+..++++.+.+...-.. .+-...+-+.|+|.+|+|||+||+.+++. .... .+.+..+.-
T Consensus 15 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~--~~~~---~~~v~~~~~-- 87 (285)
T 3h4m_A 15 RYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE--TNAT---FIRVVGSEL-- 87 (285)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH--TTCE---EEEEEGGGG--
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCC---EEEEehHHH--
Confidence 3467999999999998887432000 00012345889999999999999999873 2222 222322211
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCceEEEEEcCCCC-----------CcCChhhHHHhhc-----CCC
Q 001998 251 EFSVAKAIIEELEGSATDLHELNSLLRRIGANIAGQKFFMVLDNLWTD-----------DYRKWEPFRNCLM-----NGL 314 (984)
Q Consensus 251 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~-----------~~~~~~~l~~~l~-----~~~ 314 (984)
.....+ .....+...+......++.+|+|||+..- +......+...+. ...
T Consensus 88 ------------~~~~~~-~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~ 154 (285)
T 3h4m_A 88 ------------VKKFIG-EGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDAR 154 (285)
T ss_dssp ------------CCCSTT-HHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSS
T ss_pred ------------HHhccc-hHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCC
Confidence 111111 11112222333333456789999999431 0011122222221 223
Q ss_pred CCcEEEEEccchHHHh-h-cC---CCCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCC-ChHHHH
Q 001998 315 RGSKILLTTRKETVAR-M-ME---STDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKG-LPLAAK 387 (984)
Q Consensus 315 ~gs~iiiTtr~~~v~~-~-~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~G-lPLai~ 387 (984)
.+..||.||....... . .. -...+.+.+.+.++..+++......... .....+ ..+++.+.| .|-.+.
T Consensus 155 ~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~~----~~l~~~~~g~~~~~i~ 228 (285)
T 3h4m_A 155 GDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNL-AEDVNL----EEIAKMTEGCVGAELK 228 (285)
T ss_dssp SSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCB-CTTCCH----HHHHHHCTTCCHHHHH
T ss_pred CCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCC-CCcCCH----HHHHHHcCCCCHHHHH
Confidence 4667888887543211 1 11 1247889999999999999887644322 112233 346777776 443443
No 173
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.10 E-value=2.3e-07 Score=101.50 Aligned_cols=143 Identities=22% Similarity=0.185 Sum_probs=87.2
Q ss_pred cCCCCCCCCeEEEeecCCCCCCCchhhcCCCCcEEEEeCcCCCC-cCCCC--CCCCCcceeeeccccCceEecceecCcc
Q 001998 778 ALRPPPDLEALEIMHYKGQTAFPSWIVSLNKLKKLKLSSCCKCE-IMPPL--GALPSLEILQIQRMESVKRVGVEFLGIE 854 (984)
Q Consensus 778 ~l~~~~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~-~l~~l--~~Lp~L~~L~L~~~~~l~~~~~~~~~~~ 854 (984)
.+.++|+|++|.|++|.... +|. + .+++|++|+|..|.... .+..+ ..+|+|+.|+|+.+.... .+. .+..
T Consensus 167 ll~~~P~L~~L~L~g~~~l~-l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~-~~~--~~~~ 240 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNLS-IGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDY-GFD--GDMN 240 (362)
T ss_dssp HHHTCTTCCEEEEECCBTCB-CCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGG-TCC--SCGG
T ss_pred HHhcCCCCcEEEEeCCCCce-ecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEecccccc-ccc--hhHH
Confidence 34567899999999885454 565 3 48899999998876432 12122 368999999986321110 000 0000
Q ss_pred CCCCCCCCCCccCcccccccccccccCCCCccc--ccCCCCcccCCcccEEeeecCcCCCC-----CCcCCCCCCCcCeE
Q 001998 855 SFNDYAPSSSLSLTAFPKLKELTLFHLDGCEEW--DFGKEDVIIMPQLCYLDIRFCRKLKS-----LPDQLLQSSTLEKL 927 (984)
Q Consensus 855 ~~~~l~~~~~~~~~~f~~L~~L~l~~l~~l~~~--~~~~~~~~~l~~L~~L~l~~c~~l~~-----lp~~~~~l~~L~~L 927 (984)
.+. .......||+|+.|.+.++.-.... .+.. ...+|+|++|+|+.|. +.. ++.++..+++|+.|
T Consensus 241 ~l~-----~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~--a~~~~~L~~LdLs~n~-L~d~G~~~L~~~L~~l~~L~~L 312 (362)
T 2ra8_A 241 VFR-----PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLE--SDILPQLETMDISAGV-LTDEGARLLLDHVDKIKHLKFI 312 (362)
T ss_dssp GTG-----GGSCTTTCTTCCEEEEESCTTHHHHHHHHHH--CSSGGGCSEEECCSSC-CBHHHHHHHHTTHHHHTTCSEE
T ss_pred HHH-----HHHhcCCCCCcCEEeCCCCCCchHHHHHHHh--CccCCCCCEEECCCCC-CChHHHHHHHhhcccCCcceEE
Confidence 000 0011246899999999775322111 0111 1258999999999875 544 45555678899999
Q ss_pred EeccCcc
Q 001998 928 RIIRAPI 934 (984)
Q Consensus 928 ~i~~c~~ 934 (984)
++++|+.
T Consensus 313 ~L~~n~i 319 (362)
T 2ra8_A 313 NMKYNYL 319 (362)
T ss_dssp ECCSBBC
T ss_pred ECCCCcC
Confidence 9999874
No 174
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.08 E-value=1e-06 Score=97.17 Aligned_cols=35 Identities=14% Similarity=0.154 Sum_probs=16.6
Q ss_pred CccceEEecCCCccc--cchhhccCCcccEEeccccc
Q 001998 614 IHLRSLRLAGLKIEE--LPETCCKLFNLQTLDINECY 648 (984)
Q Consensus 614 ~~Lr~L~L~~~~i~~--lp~~i~~L~~L~~L~L~~~~ 648 (984)
.+|++|+|++|.++. +..-...+++|++|+|++|.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~ 137 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNS 137 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSC
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCC
Confidence 455555555555542 11122234455555555554
No 175
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.05 E-value=6e-05 Score=83.33 Aligned_cols=195 Identities=13% Similarity=0.066 Sum_probs=105.3
Q ss_pred CCcccccHHHHHHH---HHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEE----ecCCCC
Q 001998 178 VSEVRGRDEEMRTL---KSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVC----VSDPFD 250 (984)
Q Consensus 178 ~~~~~Gr~~~~~~l---~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~----~s~~~~ 250 (984)
-.+++|++..++.+ .+.+.... ...+.+.|+|.+|+|||++|+.+.+. ...... .+.+. .+....
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~-----~~~~~vLl~GppGtGKT~la~~la~~--l~~~~~-~~~~~~~~~~~~~~~ 114 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGK-----IAGRAVLIAGQPGTGKTAIAMGMAQA--LGPDTP-FTAIAGSEIFSLEMS 114 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTC-----CTTCEEEEEESTTSSHHHHHHHHHHH--HCSSCC-EEEEEGGGGSCSSSC
T ss_pred hhhccChHHHHHHHHHHHHHHHcCC-----CCCCEEEEECCCCCCHHHHHHHHHHH--hcccCC-cccccchhhhhcccc
Confidence 45799999987764 44444322 12357889999999999999999974 322211 12222 122344
Q ss_pred HHHHHHHHHHHhcCC---------------------C-------CC-----cccHHHHHHHHHHH--hCCC----ceEEE
Q 001998 251 EFSVAKAIIEELEGS---------------------A-------TD-----LHELNSLLRRIGAN--IAGQ----KFFMV 291 (984)
Q Consensus 251 ~~~~~~~i~~~l~~~---------------------~-------~~-----~~~~~~~~~~l~~~--l~~k----r~LlV 291 (984)
..+.+.+......+. . .. ..++.......... ..++ +.+|+
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~ 194 (368)
T 3uk6_A 115 KTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLF 194 (368)
T ss_dssp HHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEE
T ss_pred hhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEE
Confidence 444444444432110 0 00 11112222221111 1233 35999
Q ss_pred EEcCCCCCcCChhhHHHhhcCCCCCcEEEEEccc-----------------hHHHhhcCCCCeEeCCCCChHhHHHHHHH
Q 001998 292 LDNLWTDDYRKWEPFRNCLMNGLRGSKILLTTRK-----------------ETVARMMESTDIVYVQGLSEPECWSLFRR 354 (984)
Q Consensus 292 lDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~-----------------~~v~~~~~~~~~~~l~~L~~~~~~~lf~~ 354 (984)
+|++..-+......+...+...... .++++|.. ..+... ...+.+.+++.++..+++..
T Consensus 195 IDEi~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR---~~~i~~~~~~~~e~~~il~~ 270 (368)
T 3uk6_A 195 IDEVHMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDR---LLIVSTTPYSEKDTKQILRI 270 (368)
T ss_dssp EESGGGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTT---EEEEEECCCCHHHHHHHHHH
T ss_pred EhhccccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhh---ccEEEecCCCHHHHHHHHHH
Confidence 9999654444445555555443333 34444431 122222 34578999999999999988
Q ss_pred HhcCCCCCCCchhHHHHHHHHHHhcC-CChHHHHH
Q 001998 355 FAFSGRTPLECDQLEEIGRGIVRKCK-GLPLAAKT 388 (984)
Q Consensus 355 ~~~~~~~~~~~~~l~~~~~~i~~~~~-GlPLai~~ 388 (984)
.+........ .+..+.|++.+. |.|-.+..
T Consensus 271 ~~~~~~~~~~----~~~l~~l~~~~~~G~~r~~~~ 301 (368)
T 3uk6_A 271 RCEEEDVEMS----EDAYTVLTRIGLETSLRYAIQ 301 (368)
T ss_dssp HHHHTTCCBC----HHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHcCCCCC----HHHHHHHHHHhcCCCHHHHHH
Confidence 7643322122 344566888887 77755443
No 176
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.02 E-value=3.5e-05 Score=88.95 Aligned_cols=199 Identities=13% Similarity=0.135 Sum_probs=109.4
Q ss_pred CCcccccHHHHHHHHHHHhcCC---------CC-CCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecC
Q 001998 178 VSEVRGRDEEMRTLKSMLLCQG---------SD-QQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSD 247 (984)
Q Consensus 178 ~~~~~Gr~~~~~~l~~~L~~~~---------~~-~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~ 247 (984)
-.+++|++..++++..++.... .+ ...+..+.+.|+|.+|+||||+|+.+++. . .+ ..+.++.+.
T Consensus 38 ~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~--l--~~-~~i~in~s~ 112 (516)
T 1sxj_A 38 LQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQE--L--GY-DILEQNASD 112 (516)
T ss_dssp GGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHH--T--TC-EEEEECTTS
T ss_pred HHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHH--c--CC-CEEEEeCCC
Confidence 3579999999999999986411 00 00113468899999999999999999973 2 22 234455554
Q ss_pred CCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCceEEEEEcCCCCCcCC---hhhHHHhhcCCCCCcEEEEEcc
Q 001998 248 PFDEFSVAKAIIEELEGSATDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDYRK---WEPFRNCLMNGLRGSKILLTTR 324 (984)
Q Consensus 248 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~---~~~l~~~l~~~~~gs~iiiTtr 324 (984)
..... +....+........-..-...... .....+++.+||+|++..-.... +..+...+... +..||+++.
T Consensus 113 ~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~~ 187 (516)
T 1sxj_A 113 VRSKT-LLNAGVKNALDNMSVVGYFKHNEE--AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILICN 187 (516)
T ss_dssp CCCHH-HHHHTGGGGTTBCCSTTTTTC------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEES
T ss_pred cchHH-HHHHHHHHHhccccHHHHHhhhhh--hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEEc
Confidence 44433 233322222111000000000000 00123678899999996532221 24454444432 234555554
Q ss_pred chH---HHhhcCCCCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCC-hHHHHHHH
Q 001998 325 KET---VARMMESTDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGL-PLAAKTIG 390 (984)
Q Consensus 325 ~~~---v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~Gl-PLai~~~~ 390 (984)
... +.........+.+.+++.++..+++...+........+. ....|++.++|. +-++..+.
T Consensus 188 ~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~----~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 188 ERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPN----VIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp CTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTT----HHHHHHHHTTTCHHHHHHHHT
T ss_pred CCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHcCCcHHHHHHHHH
Confidence 422 222222245789999999999999887664333222222 345688889994 45555543
No 177
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.02 E-value=9.9e-05 Score=82.91 Aligned_cols=178 Identities=15% Similarity=0.192 Sum_probs=101.6
Q ss_pred CcccccHHHH---HHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHH
Q 001998 179 SEVRGRDEEM---RTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVA 255 (984)
Q Consensus 179 ~~~~Gr~~~~---~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 255 (984)
.+++|.+..+ ..+...+... ....+.|+|.+|+||||||+.+.+. ....| +.++......+-.
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~-------~~~~vLL~GppGtGKTtlAr~ia~~--~~~~f-----~~l~a~~~~~~~i 91 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAG-------HLHSMILWGPPGTGKTTLAEVIARY--ANADV-----ERISAVTSGVKEI 91 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHT-------CCCEEEEECSTTSSHHHHHHHHHHH--TTCEE-----EEEETTTCCHHHH
T ss_pred HHhCCcHHHHhchHHHHHHHHcC-------CCcEEEEECCCCCcHHHHHHHHHHH--hCCCe-----EEEEeccCCHHHH
Confidence 5789998888 6777777543 2457889999999999999999973 32222 2222211111111
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHH-HHhCCCceEEEEEcCCCCCcCChhhHHHhhcCCCCCcEEE-EEccchH--H-Hh
Q 001998 256 KAIIEELEGSATDLHELNSLLRRIG-ANIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKIL-LTTRKET--V-AR 330 (984)
Q Consensus 256 ~~i~~~l~~~~~~~~~~~~~~~~l~-~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ii-iTtr~~~--v-~~ 330 (984)
+.++ .... ....+++.+|++|++..-.....+.+...+..+ . ..+| .||.+.. + ..
T Consensus 92 r~~~-----------------~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~-~-v~lI~att~n~~~~l~~a 152 (447)
T 3pvs_A 92 REAI-----------------ERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDG-T-ITFIGATTENPSFELNSA 152 (447)
T ss_dssp HHHH-----------------HHHHHHHHTTCCEEEEEETTTCC------CCHHHHHTT-S-CEEEEEESSCGGGSSCHH
T ss_pred HHHH-----------------HHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcC-c-eEEEecCCCCcccccCHH
Confidence 1111 1111 112467889999999765555556666666552 2 2333 3555532 1 11
Q ss_pred hcCCCCeEeCCCCChHhHHHHHHHHhcCCCCC---CCchhHHHHHHHHHHhcCCChHHHHHH
Q 001998 331 MMESTDIVYVQGLSEPECWSLFRRFAFSGRTP---LECDQLEEIGRGIVRKCKGLPLAAKTI 389 (984)
Q Consensus 331 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~---~~~~~l~~~~~~i~~~~~GlPLai~~~ 389 (984)
......++.+.+++.++...++.+........ ....--.+..+.|++.++|.+-.+..+
T Consensus 153 L~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~ 214 (447)
T 3pvs_A 153 LLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNT 214 (447)
T ss_dssp HHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHH
T ss_pred HhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHH
Confidence 22334588899999999999998876431110 011112345566888888887655443
No 178
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.02 E-value=2.6e-06 Score=93.08 Aligned_cols=66 Identities=15% Similarity=0.099 Sum_probs=34.1
Q ss_pred CCCCCCeEEEEEcCCcccccCcCchhhccHHHHhhcCCCCCCCCeEEEeecCCCCC----CCchhhcCCCCcEEEEeCcC
Q 001998 743 KKKNIVGLELRFDKEEAATEGINEENEINHQAISEALRPPPDLEALEIMHYKGQTA----FPSWIVSLNKLKKLKLSSCC 818 (984)
Q Consensus 743 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~----lp~~l~~l~~L~~L~L~~~~ 818 (984)
.+++|+.|.|..|..... ....+.+ ...+++|++|+|+.|.+... ++..+..+++|+.|+|+.|.
T Consensus 250 ~~p~Lr~L~L~~~~i~~~----------~~~~la~-a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNV----------VVEMFLE-SDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp TCTTCCEEEEESCTTHHH----------HHHHHHH-CSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CCCCcCEEeCCCCCCchH----------HHHHHHh-CccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 356777777776554311 0111222 12356777777766654331 22233456667777776664
Q ss_pred C
Q 001998 819 K 819 (984)
Q Consensus 819 ~ 819 (984)
.
T Consensus 319 i 319 (362)
T 2ra8_A 319 L 319 (362)
T ss_dssp C
T ss_pred C
Confidence 3
No 179
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.99 E-value=3.1e-05 Score=83.88 Aligned_cols=179 Identities=14% Similarity=0.123 Sum_probs=101.8
Q ss_pred CCcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHH
Q 001998 178 VSEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKA 257 (984)
Q Consensus 178 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 257 (984)
-.+++|.+..++.+..++.... ...++.+.|..|+|||++|+.+.+. .. ...+.++.+. .. ...+++
T Consensus 25 ~~~ivg~~~~~~~l~~~l~~~~------~~~~~L~~G~~G~GKT~la~~la~~--l~---~~~~~i~~~~-~~-~~~i~~ 91 (324)
T 3u61_B 25 IDECILPAFDKETFKSITSKGK------IPHIILHSPSPGTGKTTVAKALCHD--VN---ADMMFVNGSD-CK-IDFVRG 91 (324)
T ss_dssp TTTSCCCHHHHHHHHHHHHTTC------CCSEEEECSSTTSSHHHHHHHHHHH--TT---EEEEEEETTT-CC-HHHHHT
T ss_pred HHHHhCcHHHHHHHHHHHHcCC------CCeEEEeeCcCCCCHHHHHHHHHHH--hC---CCEEEEcccc-cC-HHHHHH
Confidence 3579999999999999987433 2356778888999999999999873 21 2234454433 22 222222
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHHHhCCCceEEEEEcCCCCC-cCChhhHHHhhcCCCCCcEEEEEccchH-HHhh-cCC
Q 001998 258 IIEELEGSATDLHELNSLLRRIGANIAGQKFFMVLDNLWTDD-YRKWEPFRNCLMNGLRGSKILLTTRKET-VARM-MES 334 (984)
Q Consensus 258 i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~-~~~~~~l~~~l~~~~~gs~iiiTtr~~~-v~~~-~~~ 334 (984)
++...... ....+++-+||+||+..-. .+..+.+...+.....+.++|+||.... +... ...
T Consensus 92 ~~~~~~~~---------------~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR 156 (324)
T 3u61_B 92 PLTNFASA---------------ASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSR 156 (324)
T ss_dssp HHHHHHHB---------------CCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHH
T ss_pred HHHHHHhh---------------cccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhh
Confidence 22111100 0012477899999996543 3334445555544344668888887643 1111 111
Q ss_pred CCeEeCCCCChHhHHHHH-------HHHhcCCCCCCCchhHHHHHHHHHHhcCCChHHHH
Q 001998 335 TDIVYVQGLSEPECWSLF-------RRFAFSGRTPLECDQLEEIGRGIVRKCKGLPLAAK 387 (984)
Q Consensus 335 ~~~~~l~~L~~~~~~~lf-------~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~ 387 (984)
...+.+.+++.++-.+++ ...+........+ .+....|++.++|.+-.+.
T Consensus 157 ~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~---~~~~~~l~~~~~gd~R~a~ 213 (324)
T 3u61_B 157 CRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIAD---MKVVAALVKKNFPDFRKTI 213 (324)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSC---HHHHHHHHHHTCSCTTHHH
T ss_pred CcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCc---HHHHHHHHHhCCCCHHHHH
Confidence 347899999988743332 2222211111111 2455668888888765443
No 180
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.99 E-value=7.4e-05 Score=81.07 Aligned_cols=173 Identities=12% Similarity=0.068 Sum_probs=103.3
Q ss_pred cHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccc--------------------cCCCeEEEE
Q 001998 184 RDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVI--------------------NNFEIRVWV 243 (984)
Q Consensus 184 r~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~F~~~~wv 243 (984)
.++..+.+...+..+. -...+.++|..|+||||+|+.+.+...-. .|+|. .++
T Consensus 7 ~~~~~~~l~~~i~~~~------~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~-~~~ 79 (334)
T 1a5t_A 7 LRPDFEKLVASYQAGR------GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDY-YTL 79 (334)
T ss_dssp GHHHHHHHHHHHHTTC------CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTE-EEE
T ss_pred hHHHHHHHHHHHHcCC------cceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCE-EEE
Confidence 3556667777665432 34578899999999999998887631100 12232 233
Q ss_pred Eec---CCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCceEEEEEcCCCCCcCChhhHHHhhcCCCCCcEEE
Q 001998 244 CVS---DPFDEFSVAKAIIEELEGSATDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKIL 320 (984)
Q Consensus 244 ~~s---~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ii 320 (984)
... ....++. .+++.+.+...+ ..+++-++|+|++..-+....+.+...+.....++.+|
T Consensus 80 ~~~~~~~~~~i~~-ir~l~~~~~~~~----------------~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~I 142 (334)
T 1a5t_A 80 APEKGKNTLGVDA-VREVTEKLNEHA----------------RLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFF 142 (334)
T ss_dssp CCCTTCSSBCHHH-HHHHHHHTTSCC----------------TTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEE
T ss_pred eccccCCCCCHHH-HHHHHHHHhhcc----------------ccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEE
Confidence 221 1111111 112222221110 13567799999996654444566777776656677878
Q ss_pred EEccchH-HHhh-cCCCCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHH
Q 001998 321 LTTRKET-VARM-MESTDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLPLAAKTI 389 (984)
Q Consensus 321 iTtr~~~-v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~ 389 (984)
++|.+.+ +... ......+.+.+++.++..+.+.+.. ... .+....+++.++|.|..+..+
T Consensus 143 l~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~-----~~~----~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 143 LATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV-----TMS----QDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp EEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC-----CCC----HHHHHHHHHHTTTCHHHHHHT
T ss_pred EEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc-----CCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 7777643 2222 2335689999999999999998775 111 234466899999999766544
No 181
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.98 E-value=1.1e-06 Score=96.97 Aligned_cols=151 Identities=17% Similarity=0.119 Sum_probs=92.3
Q ss_pred cceeEEEEEecCcccc-----ccccc-CCCceeEEeccCCCcchhhhHHhhhccccccee-cCCCCccccC-----cccc
Q 001998 543 DKLRHSILVLDKVASF-----PVSIF-NAKKLRSLLIHSPLEVLSPVLKGLFDHLTYGED-DGGENTVHDI-----PREI 610 (984)
Q Consensus 543 ~~~r~l~l~~~~~~~~-----~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lrv-~l~~~~i~~l-----p~~i 610 (984)
..++.+.+..+.+... ...+. ..++|+.|++.+|.... .....+...++.|+. ++++|.+... ...+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~-~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDP-AGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCH-HHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCH-HHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 3456666666655421 11122 23688888888876321 223344455667777 8888877542 2222
Q ss_pred -cccCccceEEecCCCccc-----cchhhccCCcccEEeccccccccc-----ccccccCCCCCCeEEeccCCCccc---
Q 001998 611 -EKLIHLRSLRLAGLKIEE-----LPETCCKLFNLQTLDINECYRLKR-----LPQGVGSLVNLRHLVVSLNGDLDY--- 676 (984)
Q Consensus 611 -~~L~~Lr~L~L~~~~i~~-----lp~~i~~L~~L~~L~L~~~~~l~~-----lP~~i~~L~~L~~L~l~~~~~l~~--- 676 (984)
....+|++|+|++|.|+. ++..+..+++|++|+|++|. +.. ++..+...++|++|++++|. +..
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~~g~ 228 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNG-AGDTAA 228 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSC-CCHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCC-CCHHHH
Confidence 245778888888888753 55566778888888888887 432 45556777788888888873 322
Q ss_pred --CCccCCCCCCCCcCCceEec
Q 001998 677 --LPKGVERLTSLRTLREFVVS 696 (984)
Q Consensus 677 --~p~~i~~l~~L~~L~~~~~~ 696 (984)
++..+...++|++|++..+.
T Consensus 229 ~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 229 LALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHHHHHHHCSSCCEEECTTSS
T ss_pred HHHHHHHHhCCCCCEEeccCCC
Confidence 22234455677777665544
No 182
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.96 E-value=7.4e-05 Score=78.13 Aligned_cols=184 Identities=10% Similarity=0.045 Sum_probs=97.1
Q ss_pred CCcccccHHHHHHHHHHHhc---CCCC--CCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHH
Q 001998 178 VSEVRGRDEEMRTLKSMLLC---QGSD--QQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEF 252 (984)
Q Consensus 178 ~~~~~Gr~~~~~~l~~~L~~---~~~~--~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 252 (984)
-.+++|.+..++.+.+++.. ...- .+....+.+.|+|.+|+|||++|+.+++. .... .+.+..+.-.+.
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~--~~~~---~~~~~~~~~~~~- 78 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE--AQVP---FLAMAGAEFVEV- 78 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHH--HTCC---EEEEETTTTSSS-
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHH--hCCC---EEEechHHHHhh-
Confidence 35789999888887665432 1100 00122345789999999999999999873 3222 233443321110
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCceEEEEEcCCCC------------CcCChhh---HHHhhcC--CCC
Q 001998 253 SVAKAIIEELEGSATDLHELNSLLRRIGANIAGQKFFMVLDNLWTD------------DYRKWEP---FRNCLMN--GLR 315 (984)
Q Consensus 253 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~------------~~~~~~~---l~~~l~~--~~~ 315 (984)
... .....+...+.......+.+|++|++..- +...... +...+.. ...
T Consensus 79 -------------~~~-~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~ 144 (262)
T 2qz4_A 79 -------------IGG-LGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTD 144 (262)
T ss_dssp -------------STT-HHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTC
T ss_pred -------------ccC-hhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCC
Confidence 000 11122223333333456789999999642 1111222 2222222 223
Q ss_pred CcEEEEEccchHHH-hhc-C--C-CCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCChH
Q 001998 316 GSKILLTTRKETVA-RMM-E--S-TDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLPL 384 (984)
Q Consensus 316 gs~iiiTtr~~~v~-~~~-~--~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlPL 384 (984)
+..||.||...... ..+ . . ...+.+...+.++-.+++...+..... .. ........+++.+.|.+-
T Consensus 145 ~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~-~~--~~~~~~~~l~~~~~g~~~ 215 (262)
T 2qz4_A 145 HVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKL-TQ--SSTFYSQRLAELTPGFSG 215 (262)
T ss_dssp CEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTC-CB--THHHHHHHHHHTCTTCCH
T ss_pred CEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCC-Cc--chhhHHHHHHHHCCCCCH
Confidence 55677777654321 111 1 1 257789999999999999887643221 11 112234668888888754
No 183
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.95 E-value=1.6e-05 Score=78.29 Aligned_cols=45 Identities=27% Similarity=0.307 Sum_probs=37.5
Q ss_pred CcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcC
Q 001998 179 SEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
.+++||+.+++.+.+.+.... .+.+.|+|..|+||||||+.+++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~-------~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRRT-------KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS-------SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCCC-------CCceEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999986422 345689999999999999999873
No 184
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.93 E-value=0.00011 Score=79.50 Aligned_cols=170 Identities=16% Similarity=0.122 Sum_probs=93.2
Q ss_pred HHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHHHHHhcCC
Q 001998 186 EEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAIIEELEGS 265 (984)
Q Consensus 186 ~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 265 (984)
.....+..++..+. .....+.|+|.+|+||||||+.+++. ....-...++++. ..+...+...+...
T Consensus 21 ~a~~~~~~~~~~~~-----~~~~~lll~G~~GtGKT~la~~i~~~--~~~~~~~~~~i~~------~~~~~~~~~~~~~~ 87 (324)
T 1l8q_A 21 LAYEVVKEALENLG-----SLYNPIFIYGSVGTGKTHLLQAAGNE--AKKRGYRVIYSSA------DDFAQAMVEHLKKG 87 (324)
T ss_dssp HHHHHHHHHHHTTT-----TSCSSEEEECSSSSSHHHHHHHHHHH--HHHTTCCEEEEEH------HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCcC-----CCCCeEEEECCCCCcHHHHHHHHHHH--HHHCCCEEEEEEH------HHHHHHHHHHHHcC
Confidence 34445555544322 12346889999999999999999983 2221123455543 33444444443211
Q ss_pred CCCcccHHHHHHHHHHHhCCCceEEEEEcCCCCCcC--ChhhHHHhhcC-CCCCcEEEEEccch---------HHHhhcC
Q 001998 266 ATDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDYR--KWEPFRNCLMN-GLRGSKILLTTRKE---------TVARMME 333 (984)
Q Consensus 266 ~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~--~~~~l~~~l~~-~~~gs~iiiTtr~~---------~v~~~~~ 333 (984)
..... ...+ .+.-+|++||+..-... ....+...+.. ...|..||+||... .+...+.
T Consensus 88 -----~~~~~----~~~~-~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~ 157 (324)
T 1l8q_A 88 -----TINEF----RNMY-KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFE 157 (324)
T ss_dssp -----CHHHH----HHHH-HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHH
T ss_pred -----cHHHH----HHHh-cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhccc
Confidence 11222 2222 23679999999553221 12223333321 12355788887642 2223333
Q ss_pred CCCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCChH
Q 001998 334 STDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLPL 384 (984)
Q Consensus 334 ~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlPL 384 (984)
....+.+.+ +.++..+++...+........ .+....|++.+ |..-
T Consensus 158 ~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~----~~~l~~l~~~~-g~~r 202 (324)
T 1l8q_A 158 GGILVEIEL-DNKTRFKIIKEKLKEFNLELR----KEVIDYLLENT-KNVR 202 (324)
T ss_dssp TSEEEECCC-CHHHHHHHHHHHHHHTTCCCC----HHHHHHHHHHC-SSHH
T ss_pred CceEEEeCC-CHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHhC-CCHH
Confidence 335789999 999999999887643222122 34455677777 6654
No 185
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.92 E-value=5.3e-05 Score=81.46 Aligned_cols=160 Identities=13% Similarity=0.090 Sum_probs=88.7
Q ss_pred cccccHHHHHHHHHHHhcCC--------CCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCH
Q 001998 180 EVRGRDEEMRTLKSMLLCQG--------SDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDE 251 (984)
Q Consensus 180 ~~~Gr~~~~~~l~~~L~~~~--------~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~ 251 (984)
+++|.+..++.+.+.+.... .-........+.|+|.+|+|||++|+.+++...........-++.++.
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~---- 107 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTR---- 107 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECG----
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcH----
Confidence 47899988888887654210 000012345688999999999999998877321111111111233221
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCceEEEEEcCCCC---------CcCChhhHHHhhcCCCCCcEEEEE
Q 001998 252 FSVAKAIIEELEGSATDLHELNSLLRRIGANIAGQKFFMVLDNLWTD---------DYRKWEPFRNCLMNGLRGSKILLT 322 (984)
Q Consensus 252 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~---------~~~~~~~l~~~l~~~~~gs~iiiT 322 (984)
..+.....+ .....+...+... +.-+|++|++..- .......+...+.....+..||.|
T Consensus 108 --------~~l~~~~~g-~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~ 175 (309)
T 3syl_A 108 --------DDLVGQYIG-HTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILA 175 (309)
T ss_dssp --------GGTCCSSTT-CHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEE
T ss_pred --------HHhhhhccc-ccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEe
Confidence 011111111 1111222222222 3459999999632 222234455555555566788888
Q ss_pred ccchHH----------HhhcCCCCeEeCCCCChHhHHHHHHHHhc
Q 001998 323 TRKETV----------ARMMESTDIVYVQGLSEPECWSLFRRFAF 357 (984)
Q Consensus 323 tr~~~v----------~~~~~~~~~~~l~~L~~~~~~~lf~~~~~ 357 (984)
|..... ...+ ...+.+.+++.++..+++...+.
T Consensus 176 ~~~~~~~~~~~~~~~l~~R~--~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 176 GYADRMENFFQSNPGFRSRI--AHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp ECHHHHHHHHHHSTTHHHHE--EEEEEECCCCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHhhCHHHHHhC--CeEEEcCCcCHHHHHHHHHHHHH
Confidence 865432 1221 26788999999999999987764
No 186
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.91 E-value=0.00024 Score=74.65 Aligned_cols=171 Identities=14% Similarity=0.159 Sum_probs=91.3
Q ss_pred CcccccHHHHHHHHH-------HHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCH
Q 001998 179 SEVRGRDEEMRTLKS-------MLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDE 251 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~-------~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~ 251 (984)
..++|....++++.. .+.... ....+.+.|+|.+|+|||+||+.+++. ....| +.+..+.
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~----~~~~~~vLl~G~~GtGKT~la~~ia~~--~~~~~---~~i~~~~---- 99 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSD----RTPLVSVLLEGPPHSGKTALAAKIAEE--SNFPF---IKICSPD---- 99 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCS----SCSEEEEEEECSTTSSHHHHHHHHHHH--HTCSE---EEEECGG----
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccC----CCCCeEEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEeCHH----
Confidence 357787777666665 232211 235678899999999999999999983 22222 2222221
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCceEEEEEcCCCC------CcCCh----hhHHHhhcC---CCCCcE
Q 001998 252 FSVAKAIIEELEGSATDLHELNSLLRRIGANIAGQKFFMVLDNLWTD------DYRKW----EPFRNCLMN---GLRGSK 318 (984)
Q Consensus 252 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~------~~~~~----~~l~~~l~~---~~~gs~ 318 (984)
.+.+. ........+...+......+..+|+|||+..- ....- ..+...+.. ......
T Consensus 100 ---------~~~g~-~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ 169 (272)
T 1d2n_A 100 ---------KMIGF-SETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLL 169 (272)
T ss_dssp ---------GCTTC-CHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEE
T ss_pred ---------HhcCC-chHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEE
Confidence 01110 00011122233333444567889999998431 11111 222222221 222345
Q ss_pred EEEEccchHHHhh---cCC-CCeEeCCCCCh-HhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCC
Q 001998 319 ILLTTRKETVARM---MES-TDIVYVQGLSE-PECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKG 381 (984)
Q Consensus 319 iiiTtr~~~v~~~---~~~-~~~~~l~~L~~-~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~G 381 (984)
||.||........ .+. ...+.+.+++. ++...++.+.. . .. .+....|++.+.|
T Consensus 170 ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~----~-~~----~~~~~~l~~~~~g 228 (272)
T 1d2n_A 170 IIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG----N-FK----DKERTTIAQQVKG 228 (272)
T ss_dssp EEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT----C-SC----HHHHHHHHHHHTT
T ss_pred EEEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC----C-CC----HHHHHHHHHHhcC
Confidence 6777776654332 122 35678899988 77777766532 1 11 3345568888877
No 187
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.83 E-value=1.6e-05 Score=77.77 Aligned_cols=121 Identities=15% Similarity=0.221 Sum_probs=66.6
Q ss_pred cHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHHHHHhc
Q 001998 184 RDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAIIEELE 263 (984)
Q Consensus 184 r~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 263 (984)
....++.+.+++..-. ...-..+.|+|..|+||||||+.+++.......+ .++++ +..++...+.....
T Consensus 19 ~~~~~~~~~~~~~~~~----~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~-~~~~~------~~~~~~~~~~~~~~ 87 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFN----PEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI-RGYFF------DTKDLIFRLKHLMD 87 (180)
T ss_dssp HHHHHHHHHHHHHSCC----GGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC-CCCEE------EHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc----ccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC-eEEEE------EHHHHHHHHHHHhc
Confidence 4445555555554322 1234678999999999999999998842212222 23333 34455555544443
Q ss_pred CCCCCcccHHHHHHHHHHHhCCCceEEEEEcCCCCCcCChhh--HHHhhcCC-CCCcEEEEEccc
Q 001998 264 GSATDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDYRKWEP--FRNCLMNG-LRGSKILLTTRK 325 (984)
Q Consensus 264 ~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~--l~~~l~~~-~~gs~iiiTtr~ 325 (984)
..... .....+ . +.-+|||||++....+.|.. +...+... ..|..||+||..
T Consensus 88 ~~~~~-----~~~~~~----~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 88 EGKDT-----KFLKTV----L-NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp HTCCS-----HHHHHH----H-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred CchHH-----HHHHHh----c-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 22111 222222 1 45689999997544445542 33333221 246789998874
No 188
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.77 E-value=6.5e-06 Score=78.69 Aligned_cols=39 Identities=18% Similarity=0.272 Sum_probs=27.9
Q ss_pred CcccEEeeecCcCCCC--CCcCCCCCCCcCeEEeccCcchHH
Q 001998 898 PQLCYLDIRFCRKLKS--LPDQLLQSSTLEKLRIIRAPILRE 937 (984)
Q Consensus 898 ~~L~~L~l~~c~~l~~--lp~~~~~l~~L~~L~i~~c~~l~~ 937 (984)
++|++|+|++|+.+++ +. .+..+++|+.|+|++||.+++
T Consensus 114 ~~L~~L~Ls~C~~ITD~Gl~-~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 114 KSMLEMEIISCGNVTDKGII-ALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHCCEEEEESCTTCCHHHHH-HGGGCTTCCEEEEESCTTCCC
T ss_pred CCCCEEEcCCCCcCCHHHHH-HHhcCCCCCEEECCCCCCCCc
Confidence 5788888888887665 21 234578888888888887654
No 189
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.76 E-value=0.0007 Score=75.42 Aligned_cols=306 Identities=10% Similarity=0.068 Sum_probs=167.7
Q ss_pred HHhhhccccccee-cCCCCccccCc-ccccccCccceEEecCCCccccch-hhccCCcccEEeccccccccccc-ccccC
Q 001998 584 LKGLFDHLTYGED-DGGENTVHDIP-REIEKLIHLRSLRLAGLKIEELPE-TCCKLFNLQTLDINECYRLKRLP-QGVGS 659 (984)
Q Consensus 584 ~~~~~~~l~~Lrv-~l~~~~i~~lp-~~i~~L~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lP-~~i~~ 659 (984)
-..+|.++..|+. .+.. .+..++ .+|.+|.+|+.++|..+ ++.++. .+.++.+|+.+.+..+ +..++ ..+.+
T Consensus 63 g~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~--l~~i~~~aF~~ 138 (394)
T 4fs7_A 63 GYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM--LKSIGVEAFKG 138 (394)
T ss_dssp CTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT--CCEECTTTTTT
T ss_pred HHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc--eeeecceeeec
Confidence 3455788888877 7754 366664 45778888888888754 666654 5677788887766543 33433 23344
Q ss_pred CCCCCeEEeccCCCcccCC-ccCCCCCCCCcCCceEecCCCCcccccccccccccccccCCCeeEEcCCCCCCChhhhhH
Q 001998 660 LVNLRHLVVSLNGDLDYLP-KGVERLTSLRTLREFVVSSTGGKYCTKACKVEGLRQLNHLRGTLRIRGLGNVTDVEEAEK 738 (984)
Q Consensus 660 L~~L~~L~l~~~~~l~~~p-~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~ 738 (984)
+..+...... ....+. ..+.++++|+.+.+..... ......+..+.+|+.+. +. .++.. ...
T Consensus 139 ~~~~~~~~~~---~~~~i~~~aF~~c~~L~~i~l~~~~~-----~I~~~~F~~c~~L~~i~----l~--~~~~~---I~~ 201 (394)
T 4fs7_A 139 CDFKEITIPE---GVTVIGDEAFATCESLEYVSLPDSME-----TLHNGLFSGCGKLKSIK----LP--RNLKI---IRD 201 (394)
T ss_dssp CCCSEEECCT---TCCEECTTTTTTCTTCCEEECCTTCC-----EECTTTTTTCTTCCBCC----CC--TTCCE---ECT
T ss_pred ccccccccCc---cccccchhhhcccCCCcEEecCCccc-----eeccccccCCCCceEEE----cC--CCceE---eCc
Confidence 4333222222 122232 3367778888776532110 00122333344444222 11 11111 122
Q ss_pred hcccCCCCCCeEEEEEcCCcccccCcCchhhccHHHHhhcCCCCCCCCeEEEeecCCCCCCCchhhcCCCCcEEEEeCcC
Q 001998 739 ADLEKKKNIVGLELRFDKEEAATEGINEENEINHQAISEALRPPPDLEALEIMHYKGQTAFPSWIVSLNKLKKLKLSSCC 818 (984)
Q Consensus 739 ~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~ 818 (984)
..+..+..|+.+.+..+... +........+|+.+.+.... ...-...+..+.+|+.+.+..+.
T Consensus 202 ~~F~~~~~L~~i~~~~~~~~----------------i~~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~ 264 (394)
T 4fs7_A 202 YCFAECILLENMEFPNSLYY----------------LGDFALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNK 264 (394)
T ss_dssp TTTTTCTTCCBCCCCTTCCE----------------ECTTTTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTT
T ss_pred hhhccccccceeecCCCceE----------------eehhhcccCCCceEEECCCc-eecccccccccccceeEEcCCCc
Confidence 34556667766654322110 11223345688888886432 22122345578999999997763
Q ss_pred CCCcCCCCCCCCCcceeeeccccCceEecceecCccCCCCCCCCCCccCcccccccccccccCCCCcccccCCCCcccCC
Q 001998 819 KCEIMPPLGALPSLEILQIQRMESVKRVGVEFLGIESFNDYAPSSSLSLTAFPKLKELTLFHLDGCEEWDFGKEDVIIMP 898 (984)
Q Consensus 819 ~~~~l~~l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~l~ 898 (984)
..-....+..+++|+.+.+.... ++... ...+.+|+.+.+.+ ++ ..++...|..++
T Consensus 265 ~~i~~~~F~~~~~l~~~~~~~~~----i~~~~----------------F~~~~~L~~i~l~~--~i--~~I~~~aF~~c~ 320 (394)
T 4fs7_A 265 LRIGGSLFYNCSGLKKVIYGSVI----VPEKT----------------FYGCSSLTEVKLLD--SV--KFIGEEAFESCT 320 (394)
T ss_dssp CEECSCTTTTCTTCCEEEECSSE----ECTTT----------------TTTCTTCCEEEECT--TC--CEECTTTTTTCT
T ss_pred ceeeccccccccccceeccCcee----ecccc----------------cccccccccccccc--cc--ceechhhhcCCC
Confidence 32222337778888887775421 22110 23566777777643 22 235566678899
Q ss_pred cccEEeeecCcCCCCCCc-CCCCCCCcCeEEeccCcchHHhhccCCCCCccccccccceeec
Q 001998 899 QLCYLDIRFCRKLKSLPD-QLLQSSTLEKLRIIRAPILRERFKKDTGEDWSKISHIRDIQID 959 (984)
Q Consensus 899 ~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~i~~i~~l~~~ 959 (984)
+|+.++|.++ +..++. .+.+|++|+.+.+..+ +. .-+...+.....+..|.+.
T Consensus 321 ~L~~i~lp~~--v~~I~~~aF~~c~~L~~i~lp~~--l~----~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 321 SLVSIDLPYL--VEEIGKRSFRGCTSLSNINFPLS--LR----KIGANAFQGCINLKKVELP 374 (394)
T ss_dssp TCCEECCCTT--CCEECTTTTTTCTTCCEECCCTT--CC----EECTTTBTTCTTCCEEEEE
T ss_pred CCCEEEeCCc--ccEEhHHhccCCCCCCEEEECcc--cc----EehHHHhhCCCCCCEEEEC
Confidence 9999999753 667754 4667899999998654 21 1122334444556666654
No 190
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.76 E-value=4.9e-05 Score=75.94 Aligned_cols=119 Identities=17% Similarity=0.207 Sum_probs=64.0
Q ss_pred HHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHHHHHhcCC
Q 001998 186 EEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAIIEELEGS 265 (984)
Q Consensus 186 ~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 265 (984)
..++.+.+++..... ....+.+.|+|.+|+||||||+.+++. .......++|+++. ++...+.......
T Consensus 36 ~~~~~~~~~~~~~~~---~~~~~~~~l~G~~GtGKT~la~~i~~~--~~~~~~~~~~~~~~------~~~~~~~~~~~~~ 104 (202)
T 2w58_A 36 KAIRFAERFVAEYEP---GKKMKGLYLHGSFGVGKTYLLAAIANE--LAKRNVSSLIVYVP------ELFRELKHSLQDQ 104 (202)
T ss_dssp HHHHHHHHHHHHCCS---SCCCCEEEEECSTTSSHHHHHHHHHHH--HHTTTCCEEEEEHH------HHHHHHHHC---C
T ss_pred HHHHHHHHHHHHhhh---ccCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEhH------HHHHHHHHHhccc
Confidence 345555566554321 111257889999999999999999984 43444456677543 4444444332211
Q ss_pred CCCcccHHHHHHHHHHHhCCCceEEEEEcCCCCCcCChhh--HHH-hhcCC-CCCcEEEEEccc
Q 001998 266 ATDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDYRKWEP--FRN-CLMNG-LRGSKILLTTRK 325 (984)
Q Consensus 266 ~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~--l~~-~l~~~-~~gs~iiiTtr~ 325 (984)
........+.+ .-+|||||++......|.. +.. .+... ..+.++|+||..
T Consensus 105 -----~~~~~~~~~~~-----~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 105 -----TMNEKLDYIKK-----VPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp -----CCHHHHHHHHH-----SSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred -----hHHHHHHHhcC-----CCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 12223333322 2399999997654445533 222 22221 235578888874
No 191
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.74 E-value=0.00098 Score=71.76 Aligned_cols=187 Identities=14% Similarity=0.086 Sum_probs=102.0
Q ss_pred CCcccccHHHHHHHHHHHhcCC-----CCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHH
Q 001998 178 VSEVRGRDEEMRTLKSMLLCQG-----SDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEF 252 (984)
Q Consensus 178 ~~~~~Gr~~~~~~l~~~L~~~~-----~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 252 (984)
-.+++|.+..++.+...+..+. -.......+-+.++|.+|+|||+||+.+++. ....| +.++.+
T Consensus 17 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~~~---~~v~~~------ 85 (322)
T 3eie_A 17 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANSTF---FSVSSS------ 85 (322)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHH--HTCEE---EEEEHH------
T ss_pred HHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--HCCCE---EEEchH------
Confidence 4579999999999988773110 0000123456889999999999999999983 32222 223221
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHH-HHHHHHhCCCceEEEEEcCCCCCc-------CC----hhhHHHhhc---CCCCCc
Q 001998 253 SVAKAIIEELEGSATDLHELNSLL-RRIGANIAGQKFFMVLDNLWTDDY-------RK----WEPFRNCLM---NGLRGS 317 (984)
Q Consensus 253 ~~~~~i~~~l~~~~~~~~~~~~~~-~~l~~~l~~kr~LlVlDdvw~~~~-------~~----~~~l~~~l~---~~~~gs 317 (984)
++ ..... .+.+... ..+...-..++.+|+||++..-.. .. ...+...+. ....+.
T Consensus 86 ~l----~~~~~------g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v 155 (322)
T 3eie_A 86 DL----VSKWM------GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGV 155 (322)
T ss_dssp HH----HTTTG------GGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCE
T ss_pred HH----hhccc------chHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCce
Confidence 11 11100 1112222 222333345678999999954211 01 222333332 233455
Q ss_pred EEEEEccchHHH-hhc--CCCCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCC-hHHHHHH
Q 001998 318 KILLTTRKETVA-RMM--ESTDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGL-PLAAKTI 389 (984)
Q Consensus 318 ~iiiTtr~~~v~-~~~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~Gl-PLai~~~ 389 (984)
.||.||...... ..+ .-...+.+...+.++-.+++...+........ ......|++.+.|. +-.|..+
T Consensus 156 ~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~----~~~l~~la~~t~g~sg~di~~l 227 (322)
T 3eie_A 156 LVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLT----KEDYRTLGAMTEGYSGSDIAVV 227 (322)
T ss_dssp EEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCC----HHHHHHHHHTTTTCCHHHHHHH
T ss_pred EEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCC----HHHHHHHHHHcCCCCHHHHHHH
Confidence 666677653221 111 11346778889999999999987754322112 22345688888774 4444443
No 192
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.73 E-value=3.2e-05 Score=72.48 Aligned_cols=113 Identities=19% Similarity=0.078 Sum_probs=67.7
Q ss_pred cccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCccc-ccCCCeEEEEEecCCCCHHHHHHHH
Q 001998 180 EVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDV-INNFEIRVWVCVSDPFDEFSVAKAI 258 (984)
Q Consensus 180 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F~~~~wv~~s~~~~~~~~~~~i 258 (984)
+++|+...++++.+.+..-.. ...-|.|+|..|+|||++|+.+++.... ...| + +.++...+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~-----~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~---v-~~~~~~~~~------- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSE-----TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEF---V-YRELTPDNA------- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTT-----CCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCC---E-EEECCTTTS-------
T ss_pred CceeCCHHHHHHHHHHHHHhC-----CCCCEEEECCCCCCHHHHHHHHHHhCCccCCCE---E-EECCCCCcc-------
Confidence 578999999999988754321 1123679999999999999999874211 2222 2 555433222
Q ss_pred HHHhcCCCCCcccHHHHHHHHHHHhCCCceEEEEEcCCCCCcCChhhHHHhhcCCCCCcEEEEEccc
Q 001998 259 IEELEGSATDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILLTTRK 325 (984)
Q Consensus 259 ~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~ 325 (984)
..... .+... +.-.|+||++..-.......+...+.......+||.||..
T Consensus 66 -----------~~~~~---~~~~a---~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 66 -----------PQLND---FIALA---QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp -----------SCHHH---HHHHH---TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred -----------hhhhc---HHHHc---CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 11111 11111 2347899999765544445566666555556678777764
No 193
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.73 E-value=0.00017 Score=78.49 Aligned_cols=174 Identities=12% Similarity=0.125 Sum_probs=103.0
Q ss_pred CcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCccccc-CCC-eEEEEEecCCCCHHHHHH
Q 001998 179 SEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVIN-NFE-IRVWVCVSDPFDEFSVAK 256 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~-~~~wv~~s~~~~~~~~~~ 256 (984)
.+++|.+..++.+...+.... ...+.++|..|+||||+|+.+++. +.. .+. ....++.+.....
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g~-------~~~~ll~Gp~G~GKTtla~~la~~--l~~~~~~~~~~~~~~~~~~~~----- 90 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEGK-------LPHLLFYGPPGTGKTSTIVALARE--IYGKNYSNMVLELNASDDRGI----- 90 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC-------CCCEEEECSSSSSHHHHHHHHHHH--HHTTSHHHHEEEECTTSCCSH-----
T ss_pred HHhcCcHHHHHHHHHHHhcCC-------CceEEEECCCCCCHHHHHHHHHHH--HcCCCccceEEEEcCcccccH-----
Confidence 467899999999888886432 222789999999999999998873 211 111 1222222221121
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHHH------hCCCceEEEEEcCCCCCcCChhhHHHhhcCCCCCcEEEEEccchH-HH
Q 001998 257 AIIEELEGSATDLHELNSLLRRIGAN------IAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILLTTRKET-VA 329 (984)
Q Consensus 257 ~i~~~l~~~~~~~~~~~~~~~~l~~~------l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~-v~ 329 (984)
+.+.+.+... +.+.+-++|+|++..-.....+.+...+.......++|++|.... +.
T Consensus 91 ----------------~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~ 154 (340)
T 1sxj_C 91 ----------------DVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLT 154 (340)
T ss_dssp ----------------HHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSC
T ss_pred ----------------HHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccc
Confidence 1111111111 123467899999855433444556665655455677777776532 11
Q ss_pred hh-cCCCCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCChHHH
Q 001998 330 RM-MESTDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLPLAA 386 (984)
Q Consensus 330 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai 386 (984)
.. ......+.+.+++.++..+.+...+........ .+..+.|++.++|.+--+
T Consensus 155 ~~i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~~~i~----~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 155 PALLSQCTRFRFQPLPQEAIERRIANVLVHEKLKLS----PNAEKALIELSNGDMRRV 208 (340)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHTTTCCBC----HHHHHHHHHHHTTCHHHH
T ss_pred hhHHhhceeEeccCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 11 122347889999999998888776632221111 344566888889887644
No 194
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.69 E-value=0.00042 Score=75.78 Aligned_cols=188 Identities=12% Similarity=0.056 Sum_probs=101.5
Q ss_pred CCcccccHHHHHHHHHHHhcC----CC-CCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHH
Q 001998 178 VSEVRGRDEEMRTLKSMLLCQ----GS-DQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEF 252 (984)
Q Consensus 178 ~~~~~Gr~~~~~~l~~~L~~~----~~-~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 252 (984)
-.+++|.+..++.+.+.+... .. .......+.+.|+|..|+|||+||+.+++. ... ..+.++.+.-..
T Consensus 83 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~---~~~~i~~~~l~~-- 155 (357)
T 3d8b_A 83 WEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQ--SGA---TFFSISASSLTS-- 155 (357)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHH--TTC---EEEEEEGGGGCC--
T ss_pred HHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHH--cCC---eEEEEehHHhhc--
Confidence 357899999999998877431 00 000123456889999999999999999873 222 233444432111
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHH-HHHHHhCCCceEEEEEcCCCCCc-----------CChhhHHHhhcC----CCCC
Q 001998 253 SVAKAIIEELEGSATDLHELNSLLR-RIGANIAGQKFFMVLDNLWTDDY-----------RKWEPFRNCLMN----GLRG 316 (984)
Q Consensus 253 ~~~~~i~~~l~~~~~~~~~~~~~~~-~l~~~l~~kr~LlVlDdvw~~~~-----------~~~~~l~~~l~~----~~~g 316 (984)
...+ ....... .+...-..++.+|+||++..-.. .....+...+.. ...+
T Consensus 156 ------------~~~g--~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~ 221 (357)
T 3d8b_A 156 ------------KWVG--EGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDR 221 (357)
T ss_dssp ------------SSTT--HHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCC
T ss_pred ------------cccc--hHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCC
Confidence 0000 1111122 22222235678999999842100 011233333332 1234
Q ss_pred cEEEEEccchH-HHhhc-CC-CCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCC-ChHHHHHHH
Q 001998 317 SKILLTTRKET-VARMM-ES-TDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKG-LPLAAKTIG 390 (984)
Q Consensus 317 s~iiiTtr~~~-v~~~~-~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~G-lPLai~~~~ 390 (984)
..||.||.... +...+ .. ...+.+...+.++..+++...+........ .+....|++.+.| .+-.+..+.
T Consensus 222 v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~----~~~l~~la~~t~G~s~~dl~~l~ 295 (357)
T 3d8b_A 222 ILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLS----EEEIEQIVQQSDAFSGADMTQLC 295 (357)
T ss_dssp EEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCC----HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCcc----HHHHHHHHHHcCCCCHHHHHHHH
Confidence 45666665432 21111 11 246788889999999988877643221111 3445668888888 455555544
No 195
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.64 E-value=0.00063 Score=74.27 Aligned_cols=187 Identities=13% Similarity=0.064 Sum_probs=99.9
Q ss_pred CCcccccHHHHHHHHHHHhcC----CC-CCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHH
Q 001998 178 VSEVRGRDEEMRTLKSMLLCQ----GS-DQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEF 252 (984)
Q Consensus 178 ~~~~~Gr~~~~~~l~~~L~~~----~~-~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 252 (984)
-.+++|.+..++.|...+..+ .. .......+-+.++|.+|+|||+||+.+++. .... .+.+..+
T Consensus 50 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~--~~~~---~~~v~~~------ 118 (355)
T 2qp9_X 50 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANST---FFSVSSS------ 118 (355)
T ss_dssp GGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHH--HTCE---EEEEEHH------
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCC---EEEeeHH------
Confidence 357899999999998876321 00 000122345789999999999999999983 3222 2223221
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCceEEEEEcCCCCCcC------C-----hhhHHHhhcC---CCCCcE
Q 001998 253 SVAKAIIEELEGSATDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDYR------K-----WEPFRNCLMN---GLRGSK 318 (984)
Q Consensus 253 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~------~-----~~~l~~~l~~---~~~gs~ 318 (984)
++. ....+ .....+...+...-..++.+|+||++..-... . ...+...+.. ...+..
T Consensus 119 ~l~----~~~~g-----~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~ 189 (355)
T 2qp9_X 119 DLV----SKWMG-----ESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVL 189 (355)
T ss_dssp HHH----SCC--------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEE
T ss_pred HHh----hhhcc-----hHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeE
Confidence 111 11111 01112222222233467889999999642211 0 1222222221 234556
Q ss_pred EEEEccchH-----HHhhcCCCCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCC-ChHHHHHHH
Q 001998 319 ILLTTRKET-----VARMMESTDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKG-LPLAAKTIG 390 (984)
Q Consensus 319 iiiTtr~~~-----v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~G-lPLai~~~~ 390 (984)
||.||.... +.. .-...+.+...+.++-.+++............ ......|++.+.| .+-.|..+.
T Consensus 190 vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~----~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 190 VLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLT----KEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp EEEEESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCC----HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEeecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHcCCCCHHHHHHHH
Confidence 666676442 222 12356788889999999999887643321112 2334558888887 444444443
No 196
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.63 E-value=0.0015 Score=69.40 Aligned_cols=185 Identities=16% Similarity=0.140 Sum_probs=98.4
Q ss_pred CCcccccHHHHHHHHHHHhcCCC-----CCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHH
Q 001998 178 VSEVRGRDEEMRTLKSMLLCQGS-----DQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEF 252 (984)
Q Consensus 178 ~~~~~Gr~~~~~~l~~~L~~~~~-----~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 252 (984)
-.+++|.+..++.+.+.+..+.. .......+.+.|+|.+|+||||+|+.+++. ... ..+.++.+.-..
T Consensus 20 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~--~~~---~~~~i~~~~l~~-- 92 (297)
T 3b9p_A 20 WTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATE--CSA---TFLNISAASLTS-- 92 (297)
T ss_dssp GGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHH--TTC---EEEEEESTTTSS--
T ss_pred HHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--hCC---CeEEeeHHHHhh--
Confidence 35799999999999887743100 000112456889999999999999999873 222 223344332111
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHH-HHHHHHhCCCceEEEEEcCCCCCcC-------Chh----hHHHhhc---CC--CC
Q 001998 253 SVAKAIIEELEGSATDLHELNSLL-RRIGANIAGQKFFMVLDNLWTDDYR-------KWE----PFRNCLM---NG--LR 315 (984)
Q Consensus 253 ~~~~~i~~~l~~~~~~~~~~~~~~-~~l~~~l~~kr~LlVlDdvw~~~~~-------~~~----~l~~~l~---~~--~~ 315 (984)
.... +..... ..+......++.+|++|++..-... .-. .+...+. .. +.
T Consensus 93 ------------~~~~--~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 158 (297)
T 3b9p_A 93 ------------KYVG--DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGD 158 (297)
T ss_dssp ------------SSCS--CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------
T ss_pred ------------cccc--hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCC
Confidence 1001 112222 2222233456789999999542110 001 1222221 11 13
Q ss_pred CcEEEEEccchH-----HHhhcCCCCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCChH-HHHHH
Q 001998 316 GSKILLTTRKET-----VARMMESTDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLPL-AAKTI 389 (984)
Q Consensus 316 gs~iiiTtr~~~-----v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlPL-ai~~~ 389 (984)
+..||.||.... +...+ ...+.+...+.++...++...+........ .+....|++.+.|.+- ++..+
T Consensus 159 ~v~vi~~tn~~~~l~~~l~~R~--~~~i~~~~p~~~~r~~il~~~~~~~~~~~~----~~~~~~la~~~~g~~~~~l~~l 232 (297)
T 3b9p_A 159 RIVVLAATNRPQELDEAALRRF--TKRVYVSLPDEQTRELLLNRLLQKQGSPLD----TEALRRLAKITDGYSGSDLTAL 232 (297)
T ss_dssp CEEEEEEESCGGGBCHHHHHHC--CEEEECCCCCHHHHHHHHHHHHGGGSCCSC----HHHHHHHHHHTTTCCHHHHHHH
T ss_pred cEEEEeecCChhhCCHHHHhhC--CeEEEeCCcCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHcCCCCHHHHHHH
Confidence 456676776532 22222 246777778888888888776533221111 2344568888888775 44333
No 197
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.60 E-value=0.0017 Score=69.82 Aligned_cols=191 Identities=15% Similarity=0.082 Sum_probs=100.7
Q ss_pred cCCcccccHHHHHHHHHHHhcC----CC-CCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCH
Q 001998 177 DVSEVRGRDEEMRTLKSMLLCQ----GS-DQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDE 251 (984)
Q Consensus 177 ~~~~~~Gr~~~~~~l~~~L~~~----~~-~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~ 251 (984)
.-.+++|.+..++.+.+.+..+ .- .......+-+.++|.+|+|||+||+.+++. ..+ ...+.+..+.-.
T Consensus 10 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~--~~~--~~~~~i~~~~l~-- 83 (322)
T 1xwi_A 10 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE--ANN--STFFSISSSDLV-- 83 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHH--TTS--CEEEEEECCSSC--
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHH--cCC--CcEEEEEhHHHH--
Confidence 3457899999999888766321 00 000123467889999999999999999973 211 112233333211
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCceEEEEEcCCCCCc------CC-h----hhHHHhhcC---CCCCc
Q 001998 252 FSVAKAIIEELEGSATDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDY------RK-W----EPFRNCLMN---GLRGS 317 (984)
Q Consensus 252 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~------~~-~----~~l~~~l~~---~~~gs 317 (984)
....+ .....+...+...-..++.+|++|++..-.. .. . ..+...+.. ...+.
T Consensus 84 ------------~~~~g-~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v 150 (322)
T 1xwi_A 84 ------------SKWLG-ESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGI 150 (322)
T ss_dssp ------------CSSCC-SCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTE
T ss_pred ------------hhhhh-HHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCE
Confidence 11001 1112222222223346788999999964210 01 1 112222222 23345
Q ss_pred EEEEEccchHH-Hhhc--CCCCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCC-hHHHHHHH
Q 001998 318 KILLTTRKETV-ARMM--ESTDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGL-PLAAKTIG 390 (984)
Q Consensus 318 ~iiiTtr~~~v-~~~~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~Gl-PLai~~~~ 390 (984)
.||.||..... ...+ .-...+.+...+.++-.+++............ ......|++.+.|. +-.|..+.
T Consensus 151 ~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~----~~~l~~la~~t~G~sgadl~~l~ 223 (322)
T 1xwi_A 151 LVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLT----EADFRELGRKTDGYSGADISIIV 223 (322)
T ss_dssp EEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCC----HHHHHHHHHTCTTCCHHHHHHHH
T ss_pred EEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHcCCCCHHHHHHHH
Confidence 56656654321 1111 12356788888999999999887643221112 23445688888886 44454444
No 198
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.57 E-value=0.00086 Score=71.40 Aligned_cols=182 Identities=12% Similarity=0.102 Sum_probs=99.3
Q ss_pred CCcccccHHHHHHHHHHHhcCCC------CCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCH
Q 001998 178 VSEVRGRDEEMRTLKSMLLCQGS------DQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDE 251 (984)
Q Consensus 178 ~~~~~Gr~~~~~~l~~~L~~~~~------~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~ 251 (984)
-.+++|.+..++.+.+.+...-. ..+-...+.+.|+|.+|+|||+||+.+++. .... .+.+ +.
T Consensus 14 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~--~~~~---~i~v------~~ 82 (301)
T 3cf0_A 14 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQAN---FISI------KG 82 (301)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHH--TTCE---EEEE------CH
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHH--hCCC---EEEE------Eh
Confidence 35699999999988887653200 000113456889999999999999999983 3222 2222 22
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCceEEEEEcCCCCC----------cCC----hhhHHHhhcC--CCC
Q 001998 252 FSVAKAIIEELEGSATDLHELNSLLRRIGANIAGQKFFMVLDNLWTDD----------YRK----WEPFRNCLMN--GLR 315 (984)
Q Consensus 252 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~----------~~~----~~~l~~~l~~--~~~ 315 (984)
.++.. ...+... . .+...+.......+.+|++|++..-. ... ...+...+.. ...
T Consensus 83 ~~l~~----~~~g~~~--~---~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~ 153 (301)
T 3cf0_A 83 PELLT----MWFGESE--A---NVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKK 153 (301)
T ss_dssp HHHHH----HHHTTCT--T---HHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTS
T ss_pred HHHHh----hhcCchH--H---HHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCC
Confidence 23322 2222211 1 12223333334567899999995310 001 1333333332 233
Q ss_pred CcEEEEEccchHHH-hh-cC--C-CCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCChH
Q 001998 316 GSKILLTTRKETVA-RM-ME--S-TDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLPL 384 (984)
Q Consensus 316 gs~iiiTtr~~~v~-~~-~~--~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlPL 384 (984)
+..||.||...... .. .. . ...+.+...+.++-.+++......... .....+.. +++.+.|.|=
T Consensus 154 ~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~-~~~~~~~~----la~~~~g~sg 222 (301)
T 3cf0_A 154 NVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPV-AKDVDLEF----LAKMTNGFSG 222 (301)
T ss_dssp SEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB-CSSCCHHH----HHHTCSSCCH
T ss_pred CEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCC-CccchHHH----HHHHcCCCCH
Confidence 56777777655322 21 12 1 347889999999988888776633221 11222333 5566766653
No 199
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.56 E-value=5.2e-05 Score=74.39 Aligned_cols=110 Identities=15% Similarity=0.050 Sum_probs=70.2
Q ss_pred cccCCCceeEEeccCC-Ccchh--hhHHhhhccccccee-cCCCCcccc-----CcccccccCccceEEecCCCccc---
Q 001998 561 SIFNAKKLRSLLIHSP-LEVLS--PVLKGLFDHLTYGED-DGGENTVHD-----IPREIEKLIHLRSLRLAGLKIEE--- 628 (984)
Q Consensus 561 ~~~~~~~Lr~L~l~~~-~~~~~--~~~~~~~~~l~~Lrv-~l~~~~i~~-----lp~~i~~L~~Lr~L~L~~~~i~~--- 628 (984)
.+...+.|++|++.+| ..... ..+...+...+.|+. ++++|.+.. +...+...++|++|+|++|.|..
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3456777888888877 52211 123344556667777 777777653 44556666778888888887763
Q ss_pred --cchhhccCCcccEEec--cccccccc-----ccccccCCCCCCeEEeccC
Q 001998 629 --LPETCCKLFNLQTLDI--NECYRLKR-----LPQGVGSLVNLRHLVVSLN 671 (984)
Q Consensus 629 --lp~~i~~L~~L~~L~L--~~~~~l~~-----lP~~i~~L~~L~~L~l~~~ 671 (984)
+...+...++|++|+| ++|. +.. +...+...++|++|++++|
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 5566667777888888 6665 432 3444555677777777766
No 200
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.54 E-value=7.6e-05 Score=71.25 Aligned_cols=62 Identities=8% Similarity=0.159 Sum_probs=36.0
Q ss_pred CccceEEecCCCcccc-chhhccCCcccEEeccccccccccc-ccccCC----CCCCeEEeccCCCcc
Q 001998 614 IHLRSLRLAGLKIEEL-PETCCKLFNLQTLDINECYRLKRLP-QGVGSL----VNLRHLVVSLNGDLD 675 (984)
Q Consensus 614 ~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lP-~~i~~L----~~L~~L~l~~~~~l~ 675 (984)
.+|++||+++|.|+.. -..+.++++|++|+|++|..++.-- ..+..+ ++|++|++++|..++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT 128 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT 128 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC
Confidence 4677777777776521 2345667777777777776554311 113333 357777777775443
No 201
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.53 E-value=3.4e-05 Score=79.70 Aligned_cols=81 Identities=25% Similarity=0.224 Sum_probs=54.7
Q ss_pred cccCccceEEecCCCcccc---chhhccCCcccEEecccccccccccccccCCC--CCCeEEeccCCCcccCCc------
Q 001998 611 EKLIHLRSLRLAGLKIEEL---PETCCKLFNLQTLDINECYRLKRLPQGVGSLV--NLRHLVVSLNGDLDYLPK------ 679 (984)
Q Consensus 611 ~~L~~Lr~L~L~~~~i~~l---p~~i~~L~~L~~L~L~~~~~l~~lP~~i~~L~--~L~~L~l~~~~~l~~~p~------ 679 (984)
.++++|++|+|++|.|+.+ |..+..+++|++|+|++|. +..+. .+..+. +|++|++.+|+....+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCch-hhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 4577888888888887754 3566778888888888877 66552 244444 788888888864444442
Q ss_pred -cCCCCCCCCcCCce
Q 001998 680 -GVERLTSLRTLREF 693 (984)
Q Consensus 680 -~i~~l~~L~~L~~~ 693 (984)
.+..+++|+.|+..
T Consensus 245 ~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 245 AIRERFPKLLRLDGH 259 (267)
T ss_dssp HHHHHCTTCCEESSC
T ss_pred HHHHHCcccCeECCc
Confidence 25567777777643
No 202
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.52 E-value=0.00032 Score=74.38 Aligned_cols=148 Identities=12% Similarity=0.030 Sum_probs=92.7
Q ss_pred ccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcc-cc-cCCCeEEEEEecC-CCCHHHHHHHHH
Q 001998 183 GRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDND-VI-NNFEIRVWVCVSD-PFDEFSVAKAII 259 (984)
Q Consensus 183 Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~-~~F~~~~wv~~s~-~~~~~~~~~~i~ 259 (984)
|-++.++.+...+... ......++|..|+||||+|+.+.+... .. .+.+. .++..+. ...++. .+++.
T Consensus 1 g~~~~~~~L~~~i~~~-------~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~-~~l~~~~~~~~id~-ir~li 71 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS-------EGISILINGEDLSYPREVSLELPEYVEKFPPKASDV-LEIDPEGENIGIDD-IRTIK 71 (305)
T ss_dssp ---CHHHHHHHHHHTC-------SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTE-EEECCSSSCBCHHH-HHHHH
T ss_pred ChHHHHHHHHHHHHCC-------CCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCE-EEEcCCcCCCCHHH-HHHHH
Confidence 3455666677766432 256888999999999999999876311 11 23333 4444332 222222 23343
Q ss_pred HHhcCCCCCcccHHHHHHHHHHHhCCCceEEEEEcCCCCCcCChhhHHHhhcCCCCCcEEEEEccch-HHHhhcCCCCeE
Q 001998 260 EELEGSATDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILLTTRKE-TVARMMESTDIV 338 (984)
Q Consensus 260 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~-~v~~~~~~~~~~ 338 (984)
+.+...+ ..+++-++|+|++..-.....+.+...+......+.+|++|.+. .+...+... .+
T Consensus 72 ~~~~~~p----------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~ 134 (305)
T 2gno_A 72 DFLNYSP----------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VF 134 (305)
T ss_dssp HHHTSCC----------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SE
T ss_pred HHHhhcc----------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eE
Confidence 3332211 12456789999997655556677777777766778888877554 344444444 99
Q ss_pred eCCCCChHhHHHHHHHHh
Q 001998 339 YVQGLSEPECWSLFRRFA 356 (984)
Q Consensus 339 ~l~~L~~~~~~~lf~~~~ 356 (984)
++.+++.++..+.+.+..
T Consensus 135 ~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 135 RVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp EEECCCCHHHHHHHHHHH
T ss_pred eCCCCCHHHHHHHHHHHh
Confidence 999999999999998776
No 203
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.50 E-value=4.4e-05 Score=78.87 Aligned_cols=105 Identities=12% Similarity=0.068 Sum_probs=73.6
Q ss_pred cCCCceeE--EeccCCCcc-hhhhHHhhhccccccee-cCCCCccccCc---ccccccCccceEEecCCCccccchhhcc
Q 001998 563 FNAKKLRS--LLIHSPLEV-LSPVLKGLFDHLTYGED-DGGENTVHDIP---REIEKLIHLRSLRLAGLKIEELPETCCK 635 (984)
Q Consensus 563 ~~~~~Lr~--L~l~~~~~~-~~~~~~~~~~~l~~Lrv-~l~~~~i~~lp---~~i~~L~~Lr~L~L~~~~i~~lp~~i~~ 635 (984)
...+.|.. +++..|... +...++.+..++..|+. ++++|.+..++ ..+..+++|++|+|++|.|+.+ ..+..
T Consensus 138 ~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~ 216 (267)
T 3rw6_A 138 RSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDK 216 (267)
T ss_dssp GGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGG
T ss_pred CCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhh
Confidence 33444554 444444311 22222333467889999 99999987654 6677999999999999999977 34555
Q ss_pred CC--cccEEecccccccccccc-------cccCCCCCCeEEe
Q 001998 636 LF--NLQTLDINECYRLKRLPQ-------GVGSLVNLRHLVV 668 (984)
Q Consensus 636 L~--~L~~L~L~~~~~l~~lP~-------~i~~L~~L~~L~l 668 (984)
+. +|++|+|++|.....+|. .+..+++|+.|+-
T Consensus 217 l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 217 IKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp GTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred cccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 55 999999999994444552 3678999999973
No 204
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.40 E-value=0.0028 Score=70.19 Aligned_cols=189 Identities=13% Similarity=0.099 Sum_probs=97.9
Q ss_pred cCCcccccHHHHHHHHHHHhcCCC-----CCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCH
Q 001998 177 DVSEVRGRDEEMRTLKSMLLCQGS-----DQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDE 251 (984)
Q Consensus 177 ~~~~~~Gr~~~~~~l~~~L~~~~~-----~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~ 251 (984)
.-.+++|.+..++.+...+..... .......+-+.|+|..|+|||+||+.+++. ... ..+.++.+.-...
T Consensus 113 ~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~--~~~---~~~~v~~~~l~~~ 187 (389)
T 3vfd_A 113 KFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE--SNA---TFFNISAASLTSK 187 (389)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH--TTC---EEEEECSCCC---
T ss_pred ChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh--hcC---cEEEeeHHHhhcc
Confidence 345799999999999988732100 000112356889999999999999999873 222 2233333221110
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCceEEEEEcCCCCC-------cCChh----hHHHhhc---C-CCCC
Q 001998 252 FSVAKAIIEELEGSATDLHELNSLLRRIGANIAGQKFFMVLDNLWTDD-------YRKWE----PFRNCLM---N-GLRG 316 (984)
Q Consensus 252 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~-------~~~~~----~l~~~l~---~-~~~g 316 (984)
. . + .....+...+...-...+.+|+||++..-. ..... .+...+. . ....
T Consensus 188 --~--------~----g-~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 252 (389)
T 3vfd_A 188 --Y--------V----G-EGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDR 252 (389)
T ss_dssp -------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----C
T ss_pred --c--------c----c-hHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCC
Confidence 0 0 0 001112222222223456799999994320 00111 1222221 1 1223
Q ss_pred cEEEEEccchH-HHhhc-CC-CCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCChH-HHHHH
Q 001998 317 SKILLTTRKET-VARMM-ES-TDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLPL-AAKTI 389 (984)
Q Consensus 317 s~iiiTtr~~~-v~~~~-~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlPL-ai~~~ 389 (984)
..||.||.... +...+ .. ...+.+...+.++..+++...+........ .+....|++.+.|..- ++..+
T Consensus 253 v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~----~~~~~~la~~~~g~~~~~l~~L 325 (389)
T 3vfd_A 253 VLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLT----QKELAQLARMTDGYSGSDLTAL 325 (389)
T ss_dssp EEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSC----HHHHHHHHHHTTTCCHHHHHHH
T ss_pred EEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHcCCCCHHHHHHH
Confidence 45666665432 11111 12 246788999999999999887643322122 2345668888887543 44443
No 205
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.39 E-value=5.7e-05 Score=74.13 Aligned_cols=113 Identities=14% Similarity=0.170 Sum_probs=82.5
Q ss_pred hhhhHHhhhccccccee-cCCCC-cccc-----CcccccccCccceEEecCCCcc-----ccchhhccCCcccEEecccc
Q 001998 580 LSPVLKGLFDHLTYGED-DGGEN-TVHD-----IPREIEKLIHLRSLRLAGLKIE-----ELPETCCKLFNLQTLDINEC 647 (984)
Q Consensus 580 ~~~~~~~~~~~l~~Lrv-~l~~~-~i~~-----lp~~i~~L~~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~ 647 (984)
....+...+...+.|+. ++++| .+.. +...+...++|++|+|++|.|. .+...+...++|++|+|++|
T Consensus 24 ~~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N 103 (185)
T 1io0_A 24 VEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN 103 (185)
T ss_dssp HHHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred HHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC
Confidence 44556667888899999 99998 7653 5667778899999999999986 35666777789999999999
Q ss_pred ccccc-----ccccccCCCCCCeEEe--ccCCCccc-----CCccCCCCCCCCcCCceE
Q 001998 648 YRLKR-----LPQGVGSLVNLRHLVV--SLNGDLDY-----LPKGVERLTSLRTLREFV 694 (984)
Q Consensus 648 ~~l~~-----lP~~i~~L~~L~~L~l--~~~~~l~~-----~p~~i~~l~~L~~L~~~~ 694 (984)
. +.. +...+...++|++|++ ++|. +.. +...+...++|+.|++..
T Consensus 104 ~-i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~ 160 (185)
T 1io0_A 104 F-ISGSGILALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKFGYHF 160 (185)
T ss_dssp C-CCHHHHHHHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred c-CCHHHHHHHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEEeccC
Confidence 7 543 5666788889999999 6663 322 222344456677766543
No 206
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.38 E-value=0.00062 Score=83.70 Aligned_cols=154 Identities=20% Similarity=0.223 Sum_probs=80.4
Q ss_pred CcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccc---cCC-C-eEEEEEecCCCCHHH
Q 001998 179 SEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVI---NNF-E-IRVWVCVSDPFDEFS 253 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~F-~-~~~wv~~s~~~~~~~ 253 (984)
..++||+.+++++...|.... ..-+.++|.+|+||||+|+.+++...-. ... . .++++.++.-..
T Consensus 170 d~viGr~~~i~~l~~~l~~~~-------~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~--- 239 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRT-------KNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA--- 239 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSS-------CCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC--------
T ss_pred cccCCcHHHHHHHHHHHhcCC-------CCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc---
Confidence 468999999999999986533 2236789999999999999998732100 001 1 233443321100
Q ss_pred HHHHHHHHhcCCCCCcccHHH-HHHHHHHHhC-CCceEEEEEcCCCCC--------cCChhhHHHhhcCCCCCcEEEEEc
Q 001998 254 VAKAIIEELEGSATDLHELNS-LLRRIGANIA-GQKFFMVLDNLWTDD--------YRKWEPFRNCLMNGLRGSKILLTT 323 (984)
Q Consensus 254 ~~~~i~~~l~~~~~~~~~~~~-~~~~l~~~l~-~kr~LlVlDdvw~~~--------~~~~~~l~~~l~~~~~gs~iiiTt 323 (984)
+.. ...+.+. +...+...-. +++.+|++|++..-. .+....+...+..+ +..+|.+|
T Consensus 240 ----------g~~-~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~--~i~~I~at 306 (854)
T 1qvr_A 240 ----------GAK-YRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARG--ELRLIGAT 306 (854)
T ss_dssp -----------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHTT--CCCEEEEE
T ss_pred ----------cCc-cchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhCC--CeEEEEec
Confidence 000 0011222 2222222222 467899999995421 11112244444332 33455555
Q ss_pred cchHHH-----hhc-CCCCeEeCCCCChHhHHHHHHHH
Q 001998 324 RKETVA-----RMM-ESTDIVYVQGLSEPECWSLFRRF 355 (984)
Q Consensus 324 r~~~v~-----~~~-~~~~~~~l~~L~~~~~~~lf~~~ 355 (984)
...... ..+ .....+.+.+++.++..+++...
T Consensus 307 ~~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 307 TLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGL 344 (854)
T ss_dssp CHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHH
T ss_pred CchHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhh
Confidence 443321 111 22346889999999999988643
No 207
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.38 E-value=0.0019 Score=72.75 Aligned_cols=189 Identities=15% Similarity=0.121 Sum_probs=98.3
Q ss_pred CCcccccHHHHHHHHHHHhcC----CC-CCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHH
Q 001998 178 VSEVRGRDEEMRTLKSMLLCQ----GS-DQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEF 252 (984)
Q Consensus 178 ~~~~~Gr~~~~~~l~~~L~~~----~~-~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 252 (984)
-.+++|.+..++.+...+..+ .. .......+-+.++|.+|+|||+||+.+++. .. ..-++.++...
T Consensus 133 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~--~~----~~~~~~v~~~~--- 203 (444)
T 2zan_A 133 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE--AN----NSTFFSISSSD--- 203 (444)
T ss_dssp GGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHH--CC----SSEEEEECCC----
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH--cC----CCCEEEEeHHH---
Confidence 457999999999998876321 00 000123457889999999999999999973 21 11223333221
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCceEEEEEcCCCCCc-------CChhhHHHh----hcC---CCCCcE
Q 001998 253 SVAKAIIEELEGSATDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDY-------RKWEPFRNC----LMN---GLRGSK 318 (984)
Q Consensus 253 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~-------~~~~~l~~~----l~~---~~~gs~ 318 (984)
+. ....+. ....+..+.. ..-..++.+|+||++..-.. .....+... +.. ...+..
T Consensus 204 -l~----~~~~g~--~~~~~~~~f~---~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~ 273 (444)
T 2zan_A 204 -LV----SKWLGE--SEKLVKNLFQ---LARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGIL 273 (444)
T ss_dssp ---------------CCCTHHHHHH---HHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCE
T ss_pred -HH----hhhcch--HHHHHHHHHH---HHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEE
Confidence 11 111111 1112222222 22235678999999964211 111122222 211 134556
Q ss_pred EEEEccchHHH-hh-cCC-CCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCC-hHHHHHH
Q 001998 319 ILLTTRKETVA-RM-MES-TDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGL-PLAAKTI 389 (984)
Q Consensus 319 iiiTtr~~~v~-~~-~~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~Gl-PLai~~~ 389 (984)
||.||...... .. ... ...+.+...+.++...+|............ ......|++.+.|. +-.|..+
T Consensus 274 vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~----~~~l~~la~~t~G~sgadl~~l 344 (444)
T 2zan_A 274 VLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLT----EADFQELGRKTDGYSGADISII 344 (444)
T ss_dssp EEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECC----HHHHHHHHHHTTTCCHHHHHHH
T ss_pred EEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHcCCCCHHHHHHH
Confidence 77677654211 11 111 246778888888888888887633221111 23345688888884 4444444
No 208
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.36 E-value=0.00041 Score=74.46 Aligned_cols=137 Identities=16% Similarity=0.267 Sum_probs=74.2
Q ss_pred cccccHHHHHHHHHHHhcCCCC--CCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHH
Q 001998 180 EVRGRDEEMRTLKSMLLCQGSD--QQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKA 257 (984)
Q Consensus 180 ~~~Gr~~~~~~l~~~L~~~~~~--~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 257 (984)
.++|.+..++.+...+...... ........+.++|..|+||||+|+.+++. ....-...+.+.++...... ....
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~--~~~~~~~~~~~~~~~~~~~~-~~~~ 94 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMTEYMEKH-AVSR 94 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHH--HHSCGGGEEEEEGGGCCSTT-HHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHH--HcCCCcceEEeecccccccc-cHHH
Confidence 5789999999988887653110 00123468899999999999999999873 22222234555555433221 1111
Q ss_pred HHHHhcCCCC--CcccHHHHHHHHHHHhCCCceEEEEEcCCCCCcCChhhHHHhhcCCC-----------CCcEEEEEcc
Q 001998 258 IIEELEGSAT--DLHELNSLLRRIGANIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGL-----------RGSKILLTTR 324 (984)
Q Consensus 258 i~~~l~~~~~--~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iiiTtr 324 (984)
+ ++.... .......+...+. ....-+++||++..........+...+..+. ....||.||.
T Consensus 95 l---~g~~~~~~~~~~~~~~~~~~~---~~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn 168 (311)
T 4fcw_A 95 L---IGAPPGYVGYEEGGQLTEAVR---RRPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSN 168 (311)
T ss_dssp H---HCCCTTSTTTTTCCHHHHHHH---HCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEES
T ss_pred h---cCCCCccccccccchHHHHHH---hCCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecc
Confidence 1 111110 1010012222222 2334699999996655445555665554321 2344777776
Q ss_pred c
Q 001998 325 K 325 (984)
Q Consensus 325 ~ 325 (984)
.
T Consensus 169 ~ 169 (311)
T 4fcw_A 169 L 169 (311)
T ss_dssp T
T ss_pred c
Confidence 5
No 209
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.33 E-value=0.00011 Score=68.51 Aligned_cols=111 Identities=5% Similarity=-0.013 Sum_probs=61.3
Q ss_pred CcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHH
Q 001998 179 SEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAI 258 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 258 (984)
.+++|++..++++.+.+..-.. ...-|.|+|..|+|||++|+.+++... ..+.++++. .. ...
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~-----~~~~vll~G~~GtGKt~lA~~i~~~~~------~~~~~~~~~---~~---~~~ 66 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAK-----RTSPVFLTGEAGSPFETVARYFHKNGT------PWVSPARVE---YL---IDM 66 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHT-----CSSCEEEEEETTCCHHHHHGGGCCTTS------CEECCSSTT---HH---HHC
T ss_pred cCceeCCHHHHHHHHHHHHHhC-----CCCcEEEECCCCccHHHHHHHHHHhCC------CeEEechhh---CC---hHh
Confidence 3678999999988888754221 112367999999999999999987421 222222211 10 000
Q ss_pred HHHhcCCCCCcccHHHHHHHHHHHhCCCceEEEEEcCCCCCcCChhhHHHhhcCC-CCCcEEEEEccc
Q 001998 259 IEELEGSATDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNG-LRGSKILLTTRK 325 (984)
Q Consensus 259 ~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~-~~gs~iiiTtr~ 325 (984)
...+.+. .+.-.|+||++..-..+....+...+... ..+.+||.||..
T Consensus 67 -----------------~~~~~~~--a~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 67 -----------------PMELLQK--AEGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSY 115 (143)
T ss_dssp -----------------HHHHHHH--TTTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEE
T ss_pred -----------------hhhHHHh--CCCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 1111111 12347899999765443344455545433 345678888764
No 210
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.33 E-value=0.00013 Score=68.38 Aligned_cols=86 Identities=14% Similarity=0.042 Sum_probs=48.9
Q ss_pred EEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCc
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAIIEELEGSATDLHELNSLLRRIGANIAGQK 287 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 287 (984)
..++|+|..|.|||||++.+++.... ..+ .++++....-... . +..+.
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~-~~~~~~~~~~~~~-----------------------------~-~~~~~ 84 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQALE-AGK-NAAYIDAASMPLT-----------------------------D-AAFEA 84 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHHT-TTC-CEEEEETTTSCCC-----------------------------G-GGGGC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHh-cCC-cEEEEcHHHhhHH-----------------------------H-HHhCC
Confidence 46889999999999999999984221 111 2566654432211 1 12345
Q ss_pred eEEEEEcCCCCCcCChhhHHHhhcC-CCCCc-EEEEEccc
Q 001998 288 FFMVLDNLWTDDYRKWEPFRNCLMN-GLRGS-KILLTTRK 325 (984)
Q Consensus 288 ~LlVlDdvw~~~~~~~~~l~~~l~~-~~~gs-~iiiTtr~ 325 (984)
-+|||||+...+...-+.+...+.. ...|. +||+||+.
T Consensus 85 ~lLilDE~~~~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 85 EYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp SEEEEESTTCCCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred CEEEEeCccccChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 6899999965332222223333322 11233 58888874
No 211
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.31 E-value=0.0016 Score=73.80 Aligned_cols=184 Identities=11% Similarity=0.084 Sum_probs=100.2
Q ss_pred CcccccHHHHHHHHHHHhcCCCC------CCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHH
Q 001998 179 SEVRGRDEEMRTLKSMLLCQGSD------QQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEF 252 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 252 (984)
.+++|.+..++++.+++...-.. .+....+-+.|+|.+|+|||++|+.+++. .... .+.++++
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~--~~~~---fv~vn~~------ 272 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAF---FFLINGP------ 272 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHH--CSSE---EEEEEHH------
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHH--hCCC---EEEEEch------
Confidence 46899999999998887542000 00012345789999999999999999873 3222 2333321
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCceEEEEEcCCCCCc-----------CChhhHHHhhcC--CCCCcEE
Q 001998 253 SVAKAIIEELEGSATDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDY-----------RKWEPFRNCLMN--GLRGSKI 319 (984)
Q Consensus 253 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~-----------~~~~~l~~~l~~--~~~gs~i 319 (984)
++...+. + .....+...+.....+++.+|+||++..-.. .....+...+.. ...+..|
T Consensus 273 ----~l~~~~~----g-~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~v 343 (489)
T 3hu3_A 273 ----EIMSKLA----G-ESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (489)
T ss_dssp ----HHHTSCT----T-HHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEE
T ss_pred ----Hhhhhhc----c-hhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEE
Confidence 1111111 1 1112233344445567788999999832110 011223333332 2334566
Q ss_pred EEEccchH-HHhhc----CCCCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCC-hHHHH
Q 001998 320 LLTTRKET-VARMM----ESTDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGL-PLAAK 387 (984)
Q Consensus 320 iiTtr~~~-v~~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~Gl-PLai~ 387 (984)
|.||.... +...+ .-...+.+...+.++-.+++..++..... .....+.. +++.+.|. +-.+.
T Consensus 344 IaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l-~~~~~l~~----la~~t~g~s~~dL~ 412 (489)
T 3hu3_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL-ADDVDLEQ----VANETHGHVGADLA 412 (489)
T ss_dssp EEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCB-CTTCCHHH----HHHTCTTCCHHHHH
T ss_pred EEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCC-cchhhHHH----HHHHccCCcHHHHH
Confidence 66666542 22222 11346889999999999999887633221 12223433 66667664 43343
No 212
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.30 E-value=0.0022 Score=71.28 Aligned_cols=107 Identities=12% Similarity=0.141 Sum_probs=54.5
Q ss_pred hhcCCCCcEEEEeCcCCCCcCCCCCCCCCcceeeeccccCceEecceecCccCCCCCCCCCCccCcccccccccccccCC
Q 001998 803 IVSLNKLKKLKLSSCCKCEIMPPLGALPSLEILQIQRMESVKRVGVEFLGIESFNDYAPSSSLSLTAFPKLKELTLFHLD 882 (984)
Q Consensus 803 l~~l~~L~~L~L~~~~~~~~l~~l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~f~~L~~L~l~~l~ 882 (984)
+.++.+|+.+.+.+....-.-..+..+++|+.+.+.. .+..++... ..++.+|+++.+..
T Consensus 261 F~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~--~i~~I~~~a----------------F~~c~~L~~i~lp~-- 320 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSS--RITELPESV----------------FAGCISLKSIDIPE-- 320 (394)
T ss_dssp TTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCT--TCCEECTTT----------------TTTCTTCCEEECCT--
T ss_pred eeecccccEEecccccceecCcccccccccccccCCC--cccccCcee----------------ecCCCCcCEEEeCC--
Confidence 3355666666664432111111255666666666642 244443211 23445555555532
Q ss_pred CCcccccCCCCcccCCcccEEeeecCcCCCCCCc-CCCCCCCcCeEEeccCc
Q 001998 883 GCEEWDFGKEDVIIMPQLCYLDIRFCRKLKSLPD-QLLQSSTLEKLRIIRAP 933 (984)
Q Consensus 883 ~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~i~~c~ 933 (984)
+ ...++...|..+.+|+.+.|-.+ +..+.. .+.+|++|+.+++.++.
T Consensus 321 ~--v~~I~~~aF~~C~~L~~i~ip~s--v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 321 G--ITQILDDAFAGCEQLERIAIPSS--VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp T--CCEECTTTTTTCTTCCEEEECTT--CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred c--ccEehHhHhhCCCCCCEEEECcc--cCEEhHhHhhCCCCCCEEEECCce
Confidence 1 12344445666777777777542 555543 34567777777777654
No 213
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.30 E-value=0.0013 Score=74.58 Aligned_cols=145 Identities=15% Similarity=0.190 Sum_probs=78.9
Q ss_pred CcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCC------Ce-EEEEEecCCCCH
Q 001998 179 SEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNF------EI-RVWVCVSDPFDE 251 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F------~~-~~wv~~s~~~~~ 251 (984)
+.++||+.+++.+...|.... ..-+.++|.+|+|||++|+.+++. +...+ +. .+.+.++
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~-------~~~~LL~G~pG~GKT~la~~la~~--l~~~~~p~~l~~~~~~~l~~~----- 245 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRT-------KNNPVLIGEPGVGKTAIAEGLAQQ--IINNEVPEILRDKRVMTLDMG----- 245 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS-------SCEEEEESCTTTTTHHHHHHHHHH--HHSSCSCTTTSSCCEECC--------
T ss_pred CCccCcHHHHHHHHHHHhccC-------CCCeEEECCCCCCHHHHHHHHHHH--HHhCCCChhhcCCeEEEeeCC-----
Confidence 469999999999999986533 123569999999999999998873 21111 11 2222222
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCceEEEEEcCCCCCcCChhhHHHhhcCCCCCcEEEEEccchHHHh-
Q 001998 252 FSVAKAIIEELEGSATDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILLTTRKETVAR- 330 (984)
Q Consensus 252 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~v~~- 330 (984)
....+. .......+... .-..++.+|++|. . .+....+...+.. ..-++|.+|.......
T Consensus 246 --------~~~~g~--~e~~~~~~~~~---~~~~~~~iLfiD~--~--~~a~~~L~~~L~~--g~v~vI~at~~~e~~~~ 306 (468)
T 3pxg_A 246 --------TKYRGE--FEDRLKKVMDE---IRQAGNIILFIDA--A--IDASNILKPSLAR--GELQCIGATTLDEYRKY 306 (468)
T ss_dssp -----------------CTTHHHHHHH---HHTCCCCEEEECC------------CCCTTS--SSCEEEEECCTTTTHHH
T ss_pred --------ccccch--HHHHHHHHHHH---HHhcCCeEEEEeC--c--hhHHHHHHHhhcC--CCEEEEecCCHHHHHHH
Confidence 000010 01122233322 2335678999991 1 1222233333332 2346666665543111
Q ss_pred ------hcCCCCeEeCCCCChHhHHHHHHHHh
Q 001998 331 ------MMESTDIVYVQGLSEPECWSLFRRFA 356 (984)
Q Consensus 331 ------~~~~~~~~~l~~L~~~~~~~lf~~~~ 356 (984)
.......+.+.+.+.++..+++....
T Consensus 307 ~~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 307 IEKDAALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp HTTCSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred hhcCHHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 11123478999999999999998754
No 214
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.21 E-value=0.00037 Score=84.69 Aligned_cols=157 Identities=16% Similarity=0.273 Sum_probs=89.4
Q ss_pred CcccccHHHHHHHHHHHhcCCCCCC--CCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHH
Q 001998 179 SEVRGRDEEMRTLKSMLLCQGSDQQ--TNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAK 256 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 256 (984)
..++|.+..++.+...+........ ......+.++|.+|+|||++|+.+.+. ....-...+.++++.-.+..
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~--l~~~~~~~i~i~~s~~~~~~---- 564 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES--IFGDEESMIRIDMSEYMEKH---- 564 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHH--HHSCTTCEEEEEGGGGCSSC----
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCcceEEEechhccccc----
Confidence 4689999999999888875432111 123457899999999999999999873 22222334555544321100
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHHHhCCCceEEEEEcCCCCCcCChhhHHHhhcCC-----------CCCcEEEEEccc
Q 001998 257 AIIEELEGSATDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNG-----------LRGSKILLTTRK 325 (984)
Q Consensus 257 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~-----------~~gs~iiiTtr~ 325 (984)
... ...+...++. ...-+|+||++.....+....+...+..+ ....+||+||..
T Consensus 565 ----------~~~--~~~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~ 629 (758)
T 3pxi_A 565 ----------STS--GGQLTEKVRR---KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNV 629 (758)
T ss_dssp ----------CCC-----CHHHHHH---CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESS
T ss_pred ----------ccc--cchhhHHHHh---CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCC
Confidence 000 1111111211 23348999999765555555566555432 135688888873
Q ss_pred -----hH----HHhhc-----CC-CCeEeCCCCChHhHHHHHHHHh
Q 001998 326 -----ET----VARMM-----ES-TDIVYVQGLSEPECWSLFRRFA 356 (984)
Q Consensus 326 -----~~----v~~~~-----~~-~~~~~l~~L~~~~~~~lf~~~~ 356 (984)
.. +...+ .. ...+.+.+++.++..+++....
T Consensus 630 ~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 630 GASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp STTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHH
Confidence 11 11111 11 2478889999888877776543
No 215
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.18 E-value=0.0036 Score=69.54 Aligned_cols=126 Identities=12% Similarity=0.127 Sum_probs=76.2
Q ss_pred cCCCCCCCCeEEEeecCCCCCCCchhhcCCCCcEEEEeCcCCCCcCCC--CCCCCCcceeeeccccCceEecceecCccC
Q 001998 778 ALRPPPDLEALEIMHYKGQTAFPSWIVSLNKLKKLKLSSCCKCEIMPP--LGALPSLEILQIQRMESVKRVGVEFLGIES 855 (984)
Q Consensus 778 ~l~~~~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~l~~--l~~Lp~L~~L~L~~~~~l~~~~~~~~~~~~ 855 (984)
++..+.+|+.+.+..... ..-...+.++++|+.+.+... ...++. +.++.+|+.+.|.. .++.++...
T Consensus 260 aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~a----- 329 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFSSR--ITELPESVFAGCISLKSIDIPE--GITQILDDA----- 329 (394)
T ss_dssp TTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCT--TCCEECTTT-----
T ss_pred eeeecccccEEecccccc-eecCcccccccccccccCCCc--ccccCceeecCCCCcCEEEeCC--cccEehHhH-----
Confidence 466678888888765432 212334557899999998643 333443 88899999999964 356665321
Q ss_pred CCCCCCCCCccCcccccccccccccCCCCcccccCCCCcccCCcccEEeeecCcCCCCCCcCCCCCCCcCeEEecc
Q 001998 856 FNDYAPSSSLSLTAFPKLKELTLFHLDGCEEWDFGKEDVIIMPQLCYLDIRFCRKLKSLPDQLLQSSTLEKLRIIR 931 (984)
Q Consensus 856 ~~~l~~~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~i~~ 931 (984)
..+|.+|+++.+-. + ...++..+|..+++|+.+++.++... + ..+..+.+|+.+.+..
T Consensus 330 -----------F~~C~~L~~i~ip~--s--v~~I~~~aF~~C~~L~~i~~~~~~~~--~-~~~~~~~~L~~i~i~~ 387 (394)
T 4gt6_A 330 -----------FAGCEQLERIAIPS--S--VTKIPESAFSNCTALNNIEYSGSRSQ--W-NAISTDSGLQNLPVAP 387 (394)
T ss_dssp -----------TTTCTTCCEEEECT--T--CCBCCGGGGTTCTTCCEEEESSCHHH--H-HTCBCCCCC-------
T ss_pred -----------hhCCCCCCEEEECc--c--cCEEhHhHhhCCCCCCEEEECCceee--h-hhhhccCCCCEEEeCC
Confidence 24567777777632 1 22355566778999999999886422 1 2455677788777654
No 216
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.18 E-value=0.00057 Score=71.38 Aligned_cols=47 Identities=13% Similarity=0.111 Sum_probs=33.5
Q ss_pred CcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcC
Q 001998 179 SEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
..++|.+..+.++.+.+..-.. ....+.|+|..|+|||++|+.+++.
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~-----~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAP-----LDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTT-----SCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred ccceeCCHHHHHHHHHHHHHhC-----CCCCEEEECCCCCcHHHHHHHHHHh
Confidence 4588999999988877654321 1234779999999999999999874
No 217
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.17 E-value=0.0046 Score=66.80 Aligned_cols=177 Identities=16% Similarity=0.168 Sum_probs=93.5
Q ss_pred CcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHH
Q 001998 179 SEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAI 258 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 258 (984)
..++|.+..++.+...+...... +.....+.++|..|+||||||+.+++. ....|. .. +....
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~--~~~~~~~ll~Gp~G~GKTTLa~~ia~~--l~~~~~---~~--sg~~~-------- 87 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMR--GEVLDHVLLAGPPGLGKTTLAHIIASE--LQTNIH---VT--SGPVL-------- 87 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHH--TCCCCCEEEESSTTSSHHHHHHHHHHH--HTCCEE---EE--ETTTC--------
T ss_pred HHccCcHHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCEE---EE--echHh--------
Confidence 46889988888877666432000 112356899999999999999999983 322221 11 11100
Q ss_pred HHHhcCCCCCcccHHHHHHHHHHHhCCCceEEEEEcCCCCCcCChhhHHHhhcCCC------------------CCcEEE
Q 001998 259 IEELEGSATDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGL------------------RGSKIL 320 (984)
Q Consensus 259 ~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~------------------~gs~ii 320 (984)
.....+.. +...+ .++-++++|++..-.....+.+...+.... ....++
T Consensus 88 -----------~~~~~l~~-~~~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li 154 (334)
T 1in4_A 88 -----------VKQGDMAA-ILTSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLV 154 (334)
T ss_dssp -----------CSHHHHHH-HHHHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEE
T ss_pred -----------cCHHHHHH-HHHHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEE
Confidence 00111111 11112 234577888874322212222322222211 011222
Q ss_pred -EEccchHHHhhcC-C-CCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHH
Q 001998 321 -LTTRKETVARMME-S-TDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLPLAAKTI 389 (984)
Q Consensus 321 -iTtr~~~v~~~~~-~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~ 389 (984)
.|++...+...+. . .-.+.+++.+.++-.+++.+.+...... .-.+.+..|++.+.|.|-.+..+
T Consensus 155 ~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~----~~~~~~~~ia~~~~G~~R~a~~l 222 (334)
T 1in4_A 155 GATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVE----IEDAAAEMIAKRSRGTPRIAIRL 222 (334)
T ss_dssp EEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCC----BCHHHHHHHHHTSTTCHHHHHHH
T ss_pred EecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCC----cCHHHHHHHHHhcCCChHHHHHH
Confidence 3444333221111 1 2357899999999999998876322211 12455778999999999755443
No 218
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.16 E-value=0.002 Score=68.97 Aligned_cols=154 Identities=14% Similarity=0.105 Sum_probs=83.8
Q ss_pred CcccccHHHHHHHHHHHhcC--CCCC-----CCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCC-
Q 001998 179 SEVRGRDEEMRTLKSMLLCQ--GSDQ-----QTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFD- 250 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~--~~~~-----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~- 250 (984)
..++|.+..++.+...+... .... ......-+.++|.+|+|||++|+.+.+. .... .+.+.++.-.+
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--l~~~---~~~i~~~~~~~~ 89 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL--ANAP---FIKVEATKFTEV 89 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHH--HTCC---EEEEEGGGGSSC
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHH--hCCC---EEEEcchhcccC
Confidence 46899999999998877541 0000 0012345779999999999999999873 2222 33444432211
Q ss_pred ------HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCceEEEEEcCCCCCcCC------------hhhHHHhhcC
Q 001998 251 ------EFSVAKAIIEELEGSATDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDYRK------------WEPFRNCLMN 312 (984)
Q Consensus 251 ------~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~------------~~~l~~~l~~ 312 (984)
....++++.....+ .+.. .+++.+|+||++..-.... ...+...+..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~-------------~~~~--~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~ 154 (310)
T 1ofh_A 90 GYVGKEVDSIIRDLTDSAGG-------------AIDA--VEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEG 154 (310)
T ss_dssp CSGGGSTTHHHHHHHHTTTT-------------CHHH--HHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHC
T ss_pred CccCccHHHHHHHHHHHhhH-------------HHhh--ccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcC
Confidence 11122222211100 0000 1236799999996543333 3444444433
Q ss_pred C----------CCCcEEEEEcc----ch-----HHHhhcCCCCeEeCCCCChHhHHHHHHH
Q 001998 313 G----------LRGSKILLTTR----KE-----TVARMMESTDIVYVQGLSEPECWSLFRR 354 (984)
Q Consensus 313 ~----------~~gs~iiiTtr----~~-----~v~~~~~~~~~~~l~~L~~~~~~~lf~~ 354 (984)
. ..+..+|.|+. .. .+...+ ...+.+.+++.++..+++.+
T Consensus 155 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~R~--~~~i~~~~~~~~~~~~il~~ 213 (310)
T 1ofh_A 155 STVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRL--PIRVELTALSAADFERILTE 213 (310)
T ss_dssp CEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHHTC--CEEEECCCCCHHHHHHHHHS
T ss_pred CeEecccccccCCcEEEEEcCCcccCCcccCCHHHHhhC--CceEEcCCcCHHHHHHHHHh
Confidence 2 12445666642 21 122222 24689999999998888874
No 219
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.07 E-value=0.00087 Score=71.31 Aligned_cols=46 Identities=20% Similarity=0.220 Sum_probs=36.1
Q ss_pred CcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhc
Q 001998 179 SEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
..++|+...+.++.+.+..-.. ....|.|+|..|+|||++|+.+.+
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~-----~~~~vLi~Ge~GtGKt~lAr~i~~ 47 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAP-----SDATVLIHGDSGTGKELVARALHA 47 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCS-----TTSCEEEESCTTSCHHHHHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHhC-----CCCcEEEECCCCchHHHHHHHHHH
Confidence 4689999999999888765331 122467999999999999999987
No 220
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.05 E-value=0.013 Score=63.64 Aligned_cols=182 Identities=13% Similarity=0.074 Sum_probs=98.1
Q ss_pred cCCcccccHHHHHHHHHHHhcCCC------CCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCC
Q 001998 177 DVSEVRGRDEEMRTLKSMLLCQGS------DQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFD 250 (984)
Q Consensus 177 ~~~~~~Gr~~~~~~l~~~L~~~~~------~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~ 250 (984)
.-.++.|.++.+++|.+.+.-+-. ..+-...+-+.++|++|.|||.||+++++. ....| +.|..+.-.
T Consensus 146 ~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e--~~~~f---~~v~~s~l~- 219 (405)
T 4b4t_J 146 TYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHH--TDCKF---IRVSGAELV- 219 (405)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHH--HTCEE---EEEEGGGGS-
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHh--hCCCc---eEEEhHHhh-
Confidence 345788999998888776542100 000123456789999999999999999983 33333 333332111
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCceEEEEEcCCCCCc--------CC------hhhHHHhhcC--CC
Q 001998 251 EFSVAKAIIEELEGSATDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDY--------RK------WEPFRNCLMN--GL 314 (984)
Q Consensus 251 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~--------~~------~~~l~~~l~~--~~ 314 (984)
....+ .....+...+...-...+++|++|++..--. .. ...+...+.. ..
T Consensus 220 -------------sk~vG-ese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~ 285 (405)
T 4b4t_J 220 -------------QKYIG-EGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETS 285 (405)
T ss_dssp -------------CSSTT-HHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCC
T ss_pred -------------ccccc-hHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCC
Confidence 11111 1111222223333346789999999964210 00 1112222222 23
Q ss_pred CCcEEEEEccchHHH-hhc----CCCCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCCh
Q 001998 315 RGSKILLTTRKETVA-RMM----ESTDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLP 383 (984)
Q Consensus 315 ~gs~iiiTtr~~~v~-~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlP 383 (984)
.+-.||.||...+.. ..+ .-...+.+..-+.++-.++|+.+.-.... ...-++.. |++.+.|.-
T Consensus 286 ~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l-~~dvdl~~----lA~~t~G~S 354 (405)
T 4b4t_J 286 KNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNL-TRGINLRK----VAEKMNGCS 354 (405)
T ss_dssp CCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBC-CSSCCHHH----HHHHCCSCC
T ss_pred CCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCC-CccCCHHH----HHHHCCCCC
Confidence 444566677654322 111 22568888888888888888776533221 12223444 777777644
No 221
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.05 E-value=0.0066 Score=62.85 Aligned_cols=186 Identities=13% Similarity=0.058 Sum_probs=93.3
Q ss_pred cCCcccccHHHHHHHHHHHhc---CCC--CCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCH
Q 001998 177 DVSEVRGRDEEMRTLKSMLLC---QGS--DQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDE 251 (984)
Q Consensus 177 ~~~~~~Gr~~~~~~l~~~L~~---~~~--~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~ 251 (984)
.-.+++|.+..++++.+.+.. ... .......+-+.|+|..|+||||||+.+++. ....| +.+..+.-.+
T Consensus 10 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--~~~~~---~~i~~~~~~~- 83 (257)
T 1lv7_A 10 TFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE--AKVPF---FTISGSDFVE- 83 (257)
T ss_dssp CGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHH--HTCCE---EEECSCSSTT-
T ss_pred CHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCCE---EEEeHHHHHH-
Confidence 345789999888877665421 100 000011234789999999999999999873 22222 3332221100
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCceEEEEEcCCCCCc---------CC-----hhhHHHhhcC--CCC
Q 001998 252 FSVAKAIIEELEGSATDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDY---------RK-----WEPFRNCLMN--GLR 315 (984)
Q Consensus 252 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~---------~~-----~~~l~~~l~~--~~~ 315 (984)
... . .....+...++......+.++++|++..-.. .. ...+...+.. ...
T Consensus 84 ---------~~~----~-~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 149 (257)
T 1lv7_A 84 ---------MFV----G-VGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNE 149 (257)
T ss_dssp ---------SCC----C-CCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSS
T ss_pred ---------Hhh----h-hhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCC
Confidence 000 0 1122233334444455678999999832110 01 1112222221 233
Q ss_pred CcEEEEEccchH-HHhhc-C---CCCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCC-ChHHHH
Q 001998 316 GSKILLTTRKET-VARMM-E---STDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKG-LPLAAK 387 (984)
Q Consensus 316 gs~iiiTtr~~~-v~~~~-~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~G-lPLai~ 387 (984)
+..||.||...+ +...+ . -...+.+...+.++-.+++....-...- ...... ..+++.+.| .+--+.
T Consensus 150 ~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l-~~~~~~----~~la~~~~G~~~~dl~ 222 (257)
T 1lv7_A 150 GIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPL-APDIDA----AIIARGTPGFSGADLA 222 (257)
T ss_dssp CEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB-CTTCCH----HHHHHTCTTCCHHHHH
T ss_pred CEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCC-CccccH----HHHHHHcCCCCHHHHH
Confidence 456777776543 21211 1 1346778888888888888766532111 111112 236677777 554443
No 222
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.00 E-value=0.015 Score=64.23 Aligned_cols=183 Identities=14% Similarity=0.141 Sum_probs=98.3
Q ss_pred ccCCcccccHHHHHHHHHHHhcCCC------CCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCC
Q 001998 176 IDVSEVRGRDEEMRTLKSMLLCQGS------DQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPF 249 (984)
Q Consensus 176 ~~~~~~~Gr~~~~~~l~~~L~~~~~------~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~ 249 (984)
+.-.++.|.++.+++|.+.+.-+-. ..+-...+-|.++|++|.|||+||+++++. ....| +.|..+.-.
T Consensus 178 v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e--~~~~~---~~v~~s~l~ 252 (437)
T 4b4t_L 178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT--IGANF---IFSPASGIV 252 (437)
T ss_dssp SCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCEE---EEEEGGGTC
T ss_pred CChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEehhhhc
Confidence 3345788999988888776542100 000123567889999999999999999983 33332 334333211
Q ss_pred CHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCceEEEEEcCCCCC------cCC--------hhhHHHhhcC--C
Q 001998 250 DEFSVAKAIIEELEGSATDLHELNSLLRRIGANIAGQKFFMVLDNLWTDD------YRK--------WEPFRNCLMN--G 313 (984)
Q Consensus 250 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~------~~~--------~~~l~~~l~~--~ 313 (984)
....+ .....+...+...-...+++|++|++..-- ... ...+...+.. .
T Consensus 253 --------------sk~~G-ese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 317 (437)
T 4b4t_L 253 --------------DKYIG-ESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDN 317 (437)
T ss_dssp --------------CSSSS-HHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSC
T ss_pred --------------cccch-HHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccC
Confidence 11111 111122222333335678999999996411 001 1122222322 2
Q ss_pred CCCcEEEEEccchHHHh-hc-CC---CCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCCh
Q 001998 314 LRGSKILLTTRKETVAR-MM-ES---TDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLP 383 (984)
Q Consensus 314 ~~gs~iiiTtr~~~v~~-~~-~~---~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlP 383 (984)
..+..||.||...+... .+ .. ...+.+..-+.++-.++|+.+.-.... ...-++.. +++.+.|.-
T Consensus 318 ~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-~~d~dl~~----lA~~t~G~s 387 (437)
T 4b4t_L 318 LGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKK-TGEFDFEA----AVKMSDGFN 387 (437)
T ss_dssp TTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCB-CSCCCHHH----HHHTCCSCC
T ss_pred CCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCC-CcccCHHH----HHHhCCCCC
Confidence 34556777777654322 11 11 346778877888878888766533221 11223444 677777653
No 223
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.00 E-value=0.011 Score=65.25 Aligned_cols=182 Identities=12% Similarity=0.108 Sum_probs=92.3
Q ss_pred ccCCcccccHHHHHHHHHHHhcCCC------CCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCC
Q 001998 176 IDVSEVRGRDEEMRTLKSMLLCQGS------DQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPF 249 (984)
Q Consensus 176 ~~~~~~~Gr~~~~~~l~~~L~~~~~------~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~ 249 (984)
..-.++.|.++.+++|.+.+..+-. ..+-...+-+.++|++|.|||+||+++++. ...+| +.|..+.-.
T Consensus 169 v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~--~~~~~---~~v~~~~l~ 243 (428)
T 4b4t_K 169 VTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANS--TKAAF---IRVNGSEFV 243 (428)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHH--HTCEE---EEEEGGGTC
T ss_pred CCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHH--hCCCe---EEEecchhh
Confidence 3445789999999988776542100 000123556889999999999999999983 33332 334333211
Q ss_pred CHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCceEEEEEcCCC--------C-CcC-C----hhhHHHhhc--CC
Q 001998 250 DEFSVAKAIIEELEGSATDLHELNSLLRRIGANIAGQKFFMVLDNLWT--------D-DYR-K----WEPFRNCLM--NG 313 (984)
Q Consensus 250 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~--------~-~~~-~----~~~l~~~l~--~~ 313 (984)
....+ .....+...+...-...+.+|++|++.. . ..+ . ...+...+. ..
T Consensus 244 --------------~~~~G-e~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~ 308 (428)
T 4b4t_K 244 --------------HKYLG-EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQ 308 (428)
T ss_dssp --------------CSSCS-HHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCS
T ss_pred --------------ccccc-hhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCC
Confidence 11111 1111222223333346789999999842 0 001 1 112222222 12
Q ss_pred CCCcEEEEEccchHHH-hhc-C--C-CCeEeCCCCChHh-HHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCC
Q 001998 314 LRGSKILLTTRKETVA-RMM-E--S-TDIVYVQGLSEPE-CWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGL 382 (984)
Q Consensus 314 ~~gs~iiiTtr~~~v~-~~~-~--~-~~~~~l~~L~~~~-~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~Gl 382 (984)
..+-.||.||...+.. ..+ . . ...+++..+++.+ -..+|..+.-.... ...-++.. +++.+.|.
T Consensus 309 ~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l-~~~~dl~~----lA~~t~G~ 378 (428)
T 4b4t_K 309 STNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSL-APEADLDS----LIIRNDSL 378 (428)
T ss_dssp SCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCB-CTTCCHHH----HHHHTTTC
T ss_pred CCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCC-CcccCHHH----HHHHCCCC
Confidence 3455667777654321 111 1 1 3466776665544 44566555432211 11223444 66777664
No 224
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.00 E-value=0.0019 Score=73.11 Aligned_cols=96 Identities=9% Similarity=0.088 Sum_probs=57.1
Q ss_pred EEEEEcCCCCCcCChhhHHHhhcCCCCCcEEEEEc----------c----chHH-HhhcCCCCeEeCCCCChHhHHHHHH
Q 001998 289 FMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILLTT----------R----KETV-ARMMESTDIVYVQGLSEPECWSLFR 353 (984)
Q Consensus 289 LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTt----------r----~~~v-~~~~~~~~~~~l~~L~~~~~~~lf~ 353 (984)
++++|++..-+.+..+.+...+...... .+|+.| . ...+ .........+.+.+++.++..+++.
T Consensus 298 VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL~ 376 (456)
T 2c9o_A 298 VLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQIIK 376 (456)
T ss_dssp EEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHHH
T ss_pred EEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHHH
Confidence 8999999765555666676666554444 344343 2 1111 0111223457999999999999998
Q ss_pred HHhcCCCCCCCchhHHHHHHHHHHhc-CCChHHHHHH
Q 001998 354 RFAFSGRTPLECDQLEEIGRGIVRKC-KGLPLAAKTI 389 (984)
Q Consensus 354 ~~~~~~~~~~~~~~l~~~~~~i~~~~-~GlPLai~~~ 389 (984)
.++-....... .+....|++.+ .|.|-.+..+
T Consensus 377 ~~~~~~~~~~~----~~~~~~i~~~a~~g~~r~a~~l 409 (456)
T 2c9o_A 377 IRAQTEGINIS----EEALNHLGEIGTKTTLRYSVQL 409 (456)
T ss_dssp HHHHHHTCCBC----HHHHHHHHHHHHHSCHHHHHHT
T ss_pred HHHHHhCCCCC----HHHHHHHHHHccCCCHHHHHHH
Confidence 77632221111 34455677887 7888755444
No 225
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.93 E-value=0.006 Score=74.15 Aligned_cols=157 Identities=12% Similarity=0.111 Sum_probs=85.5
Q ss_pred CcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccc----cCCCeEEEE-EecCCCCHHH
Q 001998 179 SEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVI----NNFEIRVWV-CVSDPFDEFS 253 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv-~~s~~~~~~~ 253 (984)
..++||+.+++++.+.|.... ..-+.++|.+|+||||+|+.+.+...-. ......+|. ..+.
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~-------~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~------ 252 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRR-------KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGS------ 252 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS-------SCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC-------
T ss_pred CCccCCHHHHHHHHHHHhccC-------CCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHH------
Confidence 468999999999999986532 2345799999999999999988731100 012333332 1111
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHHh-CCCceEEEEEcCCCCCc-----CChhhHHHhhcC--CCCCcEEEEEccc
Q 001998 254 VAKAIIEELEGSATDLHELNSLLRRIGANI-AGQKFFMVLDNLWTDDY-----RKWEPFRNCLMN--GLRGSKILLTTRK 325 (984)
Q Consensus 254 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdvw~~~~-----~~~~~l~~~l~~--~~~gs~iiiTtr~ 325 (984)
+ +.+. ....+.+.....+.+.+ ..++.+|++|++..-.. ..-......+.. ...+.++|.+|..
T Consensus 253 l-------~~~~-~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~~~~~~I~at~~ 324 (758)
T 1r6b_X 253 L-------LAGT-KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTY 324 (758)
T ss_dssp ---------CCC-CCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSCCCEEEEEECH
T ss_pred H-------hccc-cccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhCCCeEEEEEeCc
Confidence 0 0011 11122333233333333 34678999999954210 001111222222 1234566777665
Q ss_pred hHHHhhc-------CCCCeEeCCCCChHhHHHHHHHHh
Q 001998 326 ETVARMM-------ESTDIVYVQGLSEPECWSLFRRFA 356 (984)
Q Consensus 326 ~~v~~~~-------~~~~~~~l~~L~~~~~~~lf~~~~ 356 (984)
....... .....+.+.+.+.++..+++....
T Consensus 325 ~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 325 QEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp HHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred hHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 4432211 112368899999999888887643
No 226
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.72 E-value=0.013 Score=65.69 Aligned_cols=181 Identities=14% Similarity=0.122 Sum_probs=96.3
Q ss_pred CCcccccHHHHHHHHHHHhcCCCC-----CCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHH
Q 001998 178 VSEVRGRDEEMRTLKSMLLCQGSD-----QQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEF 252 (984)
Q Consensus 178 ~~~~~Gr~~~~~~l~~~L~~~~~~-----~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 252 (984)
-.+++|.+..++++.+.+..-... ......+-+.|+|++|.|||+||+.+++. ....| +.++.+.-...
T Consensus 15 f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~--~~~~f---~~is~~~~~~~- 88 (476)
T 2ce7_A 15 FKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGE--ANVPF---FHISGSDFVEL- 88 (476)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHH--HTCCE---EEEEGGGTTTC-
T ss_pred HHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--cCCCe---eeCCHHHHHHH-
Confidence 357999998887777654321000 00011233779999999999999999983 32222 33433321110
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCceEEEEEcCCCCCc----------C----ChhhHHHhhcC--CCCC
Q 001998 253 SVAKAIIEELEGSATDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDY----------R----KWEPFRNCLMN--GLRG 316 (984)
Q Consensus 253 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~----------~----~~~~l~~~l~~--~~~g 316 (984)
+ .. .........+.......+.+|+||++..-.. . ....+...+.. ...+
T Consensus 89 ---------~----~g-~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~ 154 (476)
T 2ce7_A 89 ---------F----VG-VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEG 154 (476)
T ss_dssp ---------C----TT-HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGT
T ss_pred ---------H----hc-ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCC
Confidence 0 00 0112223334444456789999999954211 0 11222222221 2245
Q ss_pred cEEEEEccchHHHh-h-cCC---CCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCCh
Q 001998 317 SKILLTTRKETVAR-M-MES---TDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLP 383 (984)
Q Consensus 317 s~iiiTtr~~~v~~-~-~~~---~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlP 383 (984)
..||.||...+... . ... ...+.+...+.++-.+++..+...... .....+. .|++.+.|..
T Consensus 155 viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l-~~~v~l~----~la~~t~G~s 221 (476)
T 2ce7_A 155 IIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPL-AEDVNLE----IIAKRTPGFV 221 (476)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB-CTTCCHH----HHHHTCTTCC
T ss_pred EEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCC-cchhhHH----HHHHhcCCCc
Confidence 56777777654322 1 121 237788888888888888776533211 1111233 3778888876
No 227
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.72 E-value=0.0078 Score=73.01 Aligned_cols=147 Identities=15% Similarity=0.129 Sum_probs=79.4
Q ss_pred CcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcc---cccC-CCeEE-EEEecCCCCHHH
Q 001998 179 SEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDND---VINN-FEIRV-WVCVSDPFDEFS 253 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~---~~~~-F~~~~-wv~~s~~~~~~~ 253 (984)
..++||+.+++++...|.... ..-+.++|.+|+|||++|+.+.+... +-.. ..+.+ .+..
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~-------~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~-------- 244 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRT-------KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM-------- 244 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS-------SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------
T ss_pred CCccCchHHHHHHHHHHhCCC-------CCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc--------
Confidence 469999999999999997533 12367999999999999999887310 0000 11111 1211
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCceEEEEEcCCCCCcCChhhHHHhhcCCCCCcEEEEEccchHHHhh--
Q 001998 254 VAKAIIEELEGSATDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILLTTRKETVARM-- 331 (984)
Q Consensus 254 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~v~~~-- 331 (984)
.....+ .-...+..+ +......++.+|++|.- .+.-..+...+. ....++|.||........
T Consensus 245 -----g~~~~G--~~e~~l~~~---~~~~~~~~~~iLfiD~~----~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~ 308 (758)
T 3pxi_A 245 -----GTKYRG--EFEDRLKKV---MDEIRQAGNIILFIDAA----IDASNILKPSLA--RGELQCIGATTLDEYRKYIE 308 (758)
T ss_dssp ---------------CTTHHHH---HHHHHTCCCCEEEECC------------CCCTT--SSSCEEEEECCTTTTHHHHT
T ss_pred -----cccccc--hHHHHHHHH---HHHHHhcCCEEEEEcCc----hhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhh
Confidence 000001 011122222 33333467889999921 122222333332 224567766665441110
Q ss_pred -----cCCCCeEeCCCCChHhHHHHHHHHh
Q 001998 332 -----MESTDIVYVQGLSEPECWSLFRRFA 356 (984)
Q Consensus 332 -----~~~~~~~~l~~L~~~~~~~lf~~~~ 356 (984)
......+.+.+.+.++..+++....
T Consensus 309 ~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 309 KDAALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp TCSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred ccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 1112478999999999999998654
No 228
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.70 E-value=0.0011 Score=70.44 Aligned_cols=120 Identities=14% Similarity=0.167 Sum_probs=58.4
Q ss_pred cHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccc-cCCCeEEEEEecCCCCHHHHHHHHHHHh
Q 001998 184 RDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVI-NNFEIRVWVCVSDPFDEFSVAKAIIEEL 262 (984)
Q Consensus 184 r~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~~s~~~~~~~~~~~i~~~l 262 (984)
+...++.+.+++..... .....+.|+|..|+|||+||+.+++. .. ..-..++++++. +++..+....
T Consensus 133 ~~~~~~~~~~~i~~~~~----~~~~~lll~G~~GtGKT~La~aia~~--~~~~~g~~v~~~~~~------~l~~~l~~~~ 200 (308)
T 2qgz_A 133 RMEAFSAILDFVEQYPS----AEQKGLYLYGDMGIGKSYLLAAMAHE--LSEKKGVSTTLLHFP------SFAIDVKNAI 200 (308)
T ss_dssp HHHHHHHHHHHHHHCSC----SSCCEEEEECSTTSSHHHHHHHHHHH--HHHHSCCCEEEEEHH------HHHHHHHCCC
T ss_pred HHHHHHHHHHHHHhccc----cCCceEEEECCCCCCHHHHHHHHHHH--HHHhcCCcEEEEEHH------HHHHHHHHHh
Confidence 33445555566654321 12356889999999999999999984 33 332345566543 3333332222
Q ss_pred cCCCCCcccHHHHHHHHHHHhCCCceEEEEEcCCCCCcCChhh--HHH-hhcCC-CCCcEEEEEccc
Q 001998 263 EGSATDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDYRKWEP--FRN-CLMNG-LRGSKILLTTRK 325 (984)
Q Consensus 263 ~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~--l~~-~l~~~-~~gs~iiiTtr~ 325 (984)
... ........+ . +.-+|||||+.......|.. +.. .+... ..+..+|+||..
T Consensus 201 ~~~-----~~~~~~~~~----~-~~~lLiiDdig~~~~~~~~~~~ll~~ll~~r~~~~~~~IitSN~ 257 (308)
T 2qgz_A 201 SNG-----SVKEEIDAV----K-NVPVLILDDIGAEQATSWVRDEVLQVILQYRMLEELPTFFTSNY 257 (308)
T ss_dssp C---------CCTTHHH----H-TSSEEEEETCCC------CTTTTHHHHHHHHHHHTCCEEEEESS
T ss_pred ccc-----hHHHHHHHh----c-CCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEECCC
Confidence 110 011111111 1 22389999996543333421 322 22211 123468888874
No 229
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.68 E-value=0.0031 Score=68.23 Aligned_cols=153 Identities=13% Similarity=0.108 Sum_probs=84.9
Q ss_pred CcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHH
Q 001998 179 SEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAI 258 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 258 (984)
..++|++..++.+...+.... -+.++|.+|+|||+||+.+.+. ....| ..+.++......++....
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~~---------~vll~G~pGtGKT~la~~la~~--~~~~~---~~i~~~~~~~~~~l~g~~ 92 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTGG---------HILLEGVPGLAKTLSVNTLAKT--MDLDF---HRIQFTPDLLPSDLIGTM 92 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC---------CEEEESCCCHHHHHHHHHHHHH--TTCCE---EEEECCTTCCHHHHHEEE
T ss_pred cceeCcHHHHHHHHHHHHcCC---------eEEEECCCCCcHHHHHHHHHHH--hCCCe---EEEecCCCCChhhcCCce
Confidence 468899999999988886532 3789999999999999999872 32222 233343333333322111
Q ss_pred HHHhcCCCCCcccHHHHHHHHHHHhCC--CceEEEEEcCCCCCcCChhhHHHhhcCC-----------CCCcEEEEEccc
Q 001998 259 IEELEGSATDLHELNSLLRRIGANIAG--QKFFMVLDNLWTDDYRKWEPFRNCLMNG-----------LRGSKILLTTRK 325 (984)
Q Consensus 259 ~~~l~~~~~~~~~~~~~~~~l~~~l~~--kr~LlVlDdvw~~~~~~~~~l~~~l~~~-----------~~gs~iiiTtr~ 325 (984)
. ......... .-.+ ...++++|++..........+...+... .....||.|+..
T Consensus 93 ~---~~~~~~~~~----------~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np 159 (331)
T 2r44_A 93 I---YNQHKGNFE----------VKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNP 159 (331)
T ss_dssp E---EETTTTEEE----------EEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECT
T ss_pred e---ecCCCCceE----------eccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCC
Confidence 0 000000000 0001 1258999999664444444444444321 224456656552
Q ss_pred hH------HHhh-cCCCC-eEeCCCCChHhHHHHHHHHhcC
Q 001998 326 ET------VARM-MESTD-IVYVQGLSEPECWSLFRRFAFS 358 (984)
Q Consensus 326 ~~------v~~~-~~~~~-~~~l~~L~~~~~~~lf~~~~~~ 358 (984)
.. +... ..... .+.+.+.+.++-.+++......
T Consensus 160 ~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 160 VEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNM 200 (331)
T ss_dssp TCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCT
T ss_pred CcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhcccc
Confidence 21 1111 11122 5789999999999999887643
No 230
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.67 E-value=0.018 Score=63.50 Aligned_cols=13 Identities=0% Similarity=0.092 Sum_probs=6.2
Q ss_pred ccCCCceeEEecc
Q 001998 562 IFNAKKLRSLLIH 574 (984)
Q Consensus 562 ~~~~~~Lr~L~l~ 574 (984)
|.+|.+|+.+.+.
T Consensus 65 F~~C~~L~~I~lp 77 (379)
T 4h09_A 65 FNSCYNMTKVTVA 77 (379)
T ss_dssp TTTCTTCCEEEEC
T ss_pred hhCCCCCCEEEeC
Confidence 4444455555443
No 231
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.64 E-value=0.019 Score=63.29 Aligned_cols=180 Identities=15% Similarity=0.080 Sum_probs=95.9
Q ss_pred CcccccHHHHHHHHHHHhc----CCC--CCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHH
Q 001998 179 SEVRGRDEEMRTLKSMLLC----QGS--DQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEF 252 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~----~~~--~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 252 (984)
.++.|.++.+++|.+.+.- +.- ..+-...+-|.++|++|.|||+||+++++. ....| +.|..+.
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e--~~~~f---i~vs~s~----- 278 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANR--TDATF---IRVIGSE----- 278 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHH--HTCEE---EEEEGGG-----
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCCCe---EEEEhHH-----
Confidence 4788999999988775432 100 000124566789999999999999999983 33333 3333221
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCceEEEEEcCCCCC------cCC--------hhhHHHhhcC--CCCC
Q 001998 253 SVAKAIIEELEGSATDLHELNSLLRRIGANIAGQKFFMVLDNLWTDD------YRK--------WEPFRNCLMN--GLRG 316 (984)
Q Consensus 253 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~------~~~--------~~~l~~~l~~--~~~g 316 (984)
+.....+. ....+...+...-...+++|++|++..-- ... ...+...+.. ...+
T Consensus 279 ---------L~sk~vGe-sek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ 348 (467)
T 4b4t_H 279 ---------LVQKYVGE-GARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGN 348 (467)
T ss_dssp ---------GCCCSSSH-HHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTT
T ss_pred ---------hhcccCCH-HHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCc
Confidence 11111111 11122222333335678999999986411 000 0112222222 2234
Q ss_pred cEEEEEccchHHH-hhc---C-CCCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCCh
Q 001998 317 SKILLTTRKETVA-RMM---E-STDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLP 383 (984)
Q Consensus 317 s~iiiTtr~~~v~-~~~---~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlP 383 (984)
-.||.||...+.. ..+ + -...+.+..-+.++-.++|+.+.-.-.. ...-++.. |++.+.|.-
T Consensus 349 ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l-~~dvdl~~----LA~~T~GfS 415 (467)
T 4b4t_H 349 IKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSV-ERGIRWEL----ISRLCPNST 415 (467)
T ss_dssp EEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCB-CSSCCHHH----HHHHCCSCC
T ss_pred EEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCC-CCCCCHHH----HHHHCCCCC
Confidence 4566677654321 111 1 2457888888888888888776533221 12223444 677777753
No 232
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.61 E-value=0.0037 Score=75.94 Aligned_cols=134 Identities=16% Similarity=0.211 Sum_probs=73.4
Q ss_pred CcccccHHHHHHHHHHHhcCCCCC--CCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHH
Q 001998 179 SEVRGRDEEMRTLKSMLLCQGSDQ--QTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAK 256 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~--~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 256 (984)
..++|.+..++.+...+.....+. .......+.++|..|+|||++|+.+.+. .. ...+-+.++.......
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~--l~---~~~~~i~~s~~~~~~~--- 529 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA--LG---IELLRFDMSEYMERHT--- 529 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHH--HT---CEEEEEEGGGCSSSSC---
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHH--hc---CCEEEEechhhcchhh---
Confidence 458899999998888775432111 0123457899999999999999999873 21 2334455443221100
Q ss_pred HHHHHhcCCCCCcccH---HHHHHHHHHHhCCCceEEEEEcCCCCCcCChhhHHHhhcCCC-----------CCcEEEEE
Q 001998 257 AIIEELEGSATDLHEL---NSLLRRIGANIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGL-----------RGSKILLT 322 (984)
Q Consensus 257 ~i~~~l~~~~~~~~~~---~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iiiT 322 (984)
...+.+...+.... ..+...++ ....-+|+||++.....+....+...+..+. ....||.|
T Consensus 530 --~~~l~g~~~g~~g~~~~~~l~~~~~---~~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~t 604 (758)
T 1r6b_X 530 --VSRLIGAPPGYVGFDQGGLLTDAVI---KHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMT 604 (758)
T ss_dssp --CSSSCCCCSCSHHHHHTTHHHHHHH---HCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEE
T ss_pred --HhhhcCCCCCCcCccccchHHHHHH---hCCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEe
Confidence 00111111111111 11222222 2345689999997655555555665554321 23557778
Q ss_pred ccc
Q 001998 323 TRK 325 (984)
Q Consensus 323 tr~ 325 (984)
|..
T Consensus 605 sN~ 607 (758)
T 1r6b_X 605 TNA 607 (758)
T ss_dssp ECS
T ss_pred cCc
Confidence 764
No 233
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.44 E-value=0.00095 Score=69.82 Aligned_cols=159 Identities=13% Similarity=0.086 Sum_probs=79.8
Q ss_pred CCcccccHHHHHHHHHHHhcCCCCC-----CCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHH
Q 001998 178 VSEVRGRDEEMRTLKSMLLCQGSDQ-----QTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEF 252 (984)
Q Consensus 178 ~~~~~Gr~~~~~~l~~~L~~~~~~~-----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 252 (984)
-.+++|.+..++.+.+.+..-.... .....+-+.|+|.+|+|||+||+.+++. ....|- .+..+.-.
T Consensus 10 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--~~~~~~---~v~~~~~~--- 81 (268)
T 2r62_A 10 FKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE--AHVPFF---SMGGSSFI--- 81 (268)
T ss_dssp STTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHH--HTCCCC---CCCSCTTT---
T ss_pred HHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCEE---EechHHHH---
Confidence 3578999888887777654100000 0011223679999999999999999983 333331 11111100
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCceEEEEEcCCCCCc---------------CChhhHHHhhcC---CC
Q 001998 253 SVAKAIIEELEGSATDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDY---------------RKWEPFRNCLMN---GL 314 (984)
Q Consensus 253 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~---------------~~~~~l~~~l~~---~~ 314 (984)
....+.. ......+ +......++.+|++|++..-.. .....+...+.. ..
T Consensus 82 -------~~~~~~~--~~~~~~~---~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 149 (268)
T 2r62_A 82 -------EMFVGLG--ASRVRDL---FETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSEN 149 (268)
T ss_dssp -------TSCSSSC--SSSSSTT---HHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSC
T ss_pred -------HhhcchH--HHHHHHH---HHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCC
Confidence 0011111 0111111 1222234668999999943211 112223322221 11
Q ss_pred CCcEEEEEccchHHHh-h-cC---CCCeEeCCCCChHhHHHHHHHHh
Q 001998 315 RGSKILLTTRKETVAR-M-ME---STDIVYVQGLSEPECWSLFRRFA 356 (984)
Q Consensus 315 ~gs~iiiTtr~~~v~~-~-~~---~~~~~~l~~L~~~~~~~lf~~~~ 356 (984)
....||.||....... . .. -...+.+...+.++-.+++....
T Consensus 150 ~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~ 196 (268)
T 2r62_A 150 APVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHI 196 (268)
T ss_dssp SCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHT
T ss_pred CCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHH
Confidence 2245676776553211 1 11 13467788888888888887665
No 234
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.41 E-value=0.045 Score=59.68 Aligned_cols=180 Identities=15% Similarity=0.123 Sum_probs=94.8
Q ss_pred cCCcccccHHHHHHHHHHHhcC---CC---CCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCC
Q 001998 177 DVSEVRGRDEEMRTLKSMLLCQ---GS---DQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFD 250 (984)
Q Consensus 177 ~~~~~~Gr~~~~~~l~~~L~~~---~~---~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~ 250 (984)
.-.++.|.++.+++|.+.+..+ .. ..+-...+-|.++|++|.|||.||+++++. ....| +.+..+.
T Consensus 180 ~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e--~~~~f---i~v~~s~--- 251 (437)
T 4b4t_I 180 SYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQ--TSATF---LRIVGSE--- 251 (437)
T ss_dssp CGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHH--HTCEE---EEEESGG---
T ss_pred cceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHH--hCCCE---EEEEHHH---
Confidence 3457889999888887765321 00 000123466889999999999999999983 33332 2233221
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHH-HHHHhCCCceEEEEEcCCCCC--------cCC------hhhHHHhhc--CC
Q 001998 251 EFSVAKAIIEELEGSATDLHELNSLLRR-IGANIAGQKFFMVLDNLWTDD--------YRK------WEPFRNCLM--NG 313 (984)
Q Consensus 251 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~-l~~~l~~kr~LlVlDdvw~~~--------~~~------~~~l~~~l~--~~ 313 (984)
+.....+ +.+...+. +...-...+++|++|++..-- ... ...+...+. ..
T Consensus 252 -----------l~sk~vG--esek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~ 318 (437)
T 4b4t_I 252 -----------LIQKYLG--DGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDD 318 (437)
T ss_dssp -----------GCCSSSS--HHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCC
T ss_pred -----------hhhccCc--hHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCC
Confidence 1111111 11222222 222334678999999986310 001 111222221 12
Q ss_pred CCCcEEEEEccchHHHh-hc-C--C-CCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCC
Q 001998 314 LRGSKILLTTRKETVAR-MM-E--S-TDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGL 382 (984)
Q Consensus 314 ~~gs~iiiTtr~~~v~~-~~-~--~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~Gl 382 (984)
..+-.||.||...+... .+ . . ...+.+..-+.++-.++|..+.-.... ...-++.. |++.+.|.
T Consensus 319 ~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l-~~dvdl~~----LA~~T~Gf 387 (437)
T 4b4t_I 319 RGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNL-SEDVNLET----LVTTKDDL 387 (437)
T ss_dssp SSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCB-CSCCCHHH----HHHHCCSC
T ss_pred CCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCC-CCcCCHHH----HHHhCCCC
Confidence 33456666776654322 22 1 1 346778877888888888776533221 12223444 66677664
No 235
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.37 E-value=0.0012 Score=68.97 Aligned_cols=68 Identities=19% Similarity=0.282 Sum_probs=44.7
Q ss_pred eEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEe--cCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhC
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCV--SDPFDEFSVAKAIIEELEGSATDLHELNSLLRRIGANIA 284 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~--s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 284 (984)
-+++.|+|++|+||||||.++... .-..++|+++ ....+. - ..+.+.....+.+.+.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~~~eE~v~~-------------~---~~~le~~l~~i~~~l~ 181 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATVRFGEPLSG-------------Y---NTDFNVFVDDIARAML 181 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEEEBSCSSTT-------------C---BCCHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEecchhhhhh-------------h---hcCHHHHHHHHHHHHh
Confidence 356789999999999999998863 1123456666 322111 0 0345666666666666
Q ss_pred CCceEEEEEcCC
Q 001998 285 GQKFFMVLDNLW 296 (984)
Q Consensus 285 ~kr~LlVlDdvw 296 (984)
..+ +||+|++.
T Consensus 182 ~~~-LLVIDsI~ 192 (331)
T 2vhj_A 182 QHR-VIVIDSLK 192 (331)
T ss_dssp HCS-EEEEECCT
T ss_pred hCC-EEEEeccc
Confidence 556 99999994
No 236
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.36 E-value=0.015 Score=64.25 Aligned_cols=180 Identities=18% Similarity=0.132 Sum_probs=94.1
Q ss_pred cCCcccccHHHHHHHHHHHhc----CCC--CCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCC
Q 001998 177 DVSEVRGRDEEMRTLKSMLLC----QGS--DQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFD 250 (984)
Q Consensus 177 ~~~~~~Gr~~~~~~l~~~L~~----~~~--~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~ 250 (984)
.-.++.|-++.+++|.+.+.. +.- ..+-...+-|.++|++|.|||.||+++++. ....| +.+..+.
T Consensus 179 t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e--~~~~f---~~v~~s~--- 250 (434)
T 4b4t_M 179 TYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQ--TNATF---LKLAAPQ--- 250 (434)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCEE---EEEEGGG---
T ss_pred ChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHH--hCCCE---EEEehhh---
Confidence 345789999999988876432 100 000123567889999999999999999983 33332 3333221
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHH-HHHhCCCceEEEEEcCCCC-------CcC---Ch----hhHHHhhcC--C
Q 001998 251 EFSVAKAIIEELEGSATDLHELNSLLRRI-GANIAGQKFFMVLDNLWTD-------DYR---KW----EPFRNCLMN--G 313 (984)
Q Consensus 251 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l-~~~l~~kr~LlVlDdvw~~-------~~~---~~----~~l~~~l~~--~ 313 (984)
+.....+ +.+...+.+ ...-...+++|++|++..- ... .. ..+...+.. .
T Consensus 251 -----------l~~~~vG--ese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~ 317 (434)
T 4b4t_M 251 -----------LVQMYIG--EGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSS 317 (434)
T ss_dssp -----------GCSSCSS--HHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCS
T ss_pred -----------hhhcccc--hHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCC
Confidence 1111111 111222222 2222356899999998420 000 01 112222222 2
Q ss_pred CCCcEEEEEccchHHHh-hc-CC---CCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCC
Q 001998 314 LRGSKILLTTRKETVAR-MM-ES---TDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGL 382 (984)
Q Consensus 314 ~~gs~iiiTtr~~~v~~-~~-~~---~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~Gl 382 (984)
..+-.||.||...+... .+ .+ ...+.+..-+.++-.++|+.+.-.... ...-++.. |++.+.|.
T Consensus 318 ~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-~~dvdl~~----lA~~t~G~ 386 (434)
T 4b4t_M 318 DDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTT-DDDINWQE----LARSTDEF 386 (434)
T ss_dssp SCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCB-CSCCCHHH----HHHHCSSC
T ss_pred CCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCC-CCcCCHHH----HHHhCCCC
Confidence 23445666777654322 22 11 347788888888888888765432211 11123444 67777764
No 237
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.34 E-value=0.0068 Score=74.45 Aligned_cols=137 Identities=18% Similarity=0.287 Sum_probs=72.6
Q ss_pred CcccccHHHHHHHHHHHhcCCCCC--CCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHH
Q 001998 179 SEVRGRDEEMRTLKSMLLCQGSDQ--QTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAK 256 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~--~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 256 (984)
..++|.+..++.+...+.....+. .+.....+.|+|..|+|||++|+.+.+. ....-...+.+.++.-.... .
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~--~~~~~~~~i~i~~~~~~~~~-~-- 632 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMTEYMEKH-A-- 632 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHH--HHSSGGGEEEECTTTCCSSG-G--
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhccchh-H--
Confidence 358999999999888876432110 0123467889999999999999999873 21111223444444322110 0
Q ss_pred HHHHHhcCCCCC---cccHHHHHHHHHHHhCCCceEEEEEcCCCCCcCChhhHHHhhcCCC-----------CCcEEEEE
Q 001998 257 AIIEELEGSATD---LHELNSLLRRIGANIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGL-----------RGSKILLT 322 (984)
Q Consensus 257 ~i~~~l~~~~~~---~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iiiT 322 (984)
...+.+...+ ......+...++. ...-+|+||++.....+....+...+..+. .+..||+|
T Consensus 633 --~s~l~g~~~~~~G~~~~g~l~~~~~~---~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~t 707 (854)
T 1qvr_A 633 --VSRLIGAPPGYVGYEEGGQLTEAVRR---RPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILT 707 (854)
T ss_dssp --GGGC--------------CHHHHHHH---CSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEE
T ss_pred --HHHHcCCCCCCcCccccchHHHHHHh---CCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEe
Confidence 0111111000 0001122222222 233589999997655555556666665431 34558888
Q ss_pred ccc
Q 001998 323 TRK 325 (984)
Q Consensus 323 tr~ 325 (984)
|..
T Consensus 708 sn~ 710 (854)
T 1qvr_A 708 SNL 710 (854)
T ss_dssp CCT
T ss_pred cCc
Confidence 875
No 238
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.27 E-value=0.014 Score=58.52 Aligned_cols=84 Identities=17% Similarity=0.137 Sum_probs=51.8
Q ss_pred eEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHHHHHhcC------------CCCCcccHHH
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAIIEELEG------------SATDLHELNS 274 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~------------~~~~~~~~~~ 274 (984)
-.++.|+|.+|+||||||..+.. ..-..++|++....++...+.. +.+.... ......+..+
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~-----~~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL-----LSGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQRR 93 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH-----HHCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-----HcCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHHH
Confidence 34899999999999999999886 1224678888776666655443 3332221 1111122233
Q ss_pred HHHHHHHHhCCCceEEEEEcCC
Q 001998 275 LLRRIGANIAGQKFFMVLDNLW 296 (984)
Q Consensus 275 ~~~~l~~~l~~kr~LlVlDdvw 296 (984)
....++..+..+.-+||+|.+-
T Consensus 94 ~~~~~~~l~~~~~~lliiD~~~ 115 (220)
T 2cvh_A 94 VIGSLKKTVDSNFALVVVDSIT 115 (220)
T ss_dssp HHHHHHHHCCTTEEEEEEECCC
T ss_pred HHHHHHHHhhcCCCEEEEcCcH
Confidence 4445555554456789999874
No 239
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.24 E-value=0.018 Score=66.39 Aligned_cols=162 Identities=15% Similarity=0.160 Sum_probs=77.8
Q ss_pred CcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHH
Q 001998 179 SEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAI 258 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 258 (984)
.+++|.+...+.+.+.+.-..-.. .....++.++|.+|+||||||+.+++. ....| .-+.++...+...+....
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~-~~~g~~vll~Gp~GtGKTtlar~ia~~--l~~~~---~~i~~~~~~~~~~~~g~~ 154 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTK-SLKGPILCLAGPPGVGKTSLAKSIAKS--LGRKF---VRISLGGVRDESEIRGHR 154 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSS-SCCSCEEEEESSSSSSHHHHHHHHHHH--HTCEE---EEECCCC-----------
T ss_pred HHhccHHHHHHHHHHHHHHHHhcc-cCCCCEEEEECCCCCCHHHHHHHHHHh--cCCCe---EEEEecccchhhhhhhHH
Confidence 468898888877765443111000 113457899999999999999999873 22222 222333222222211111
Q ss_pred HHHhcCCCCCcccHHHHHHHHHHHhCCCceEEEEEcCCCCCcC----ChhhHHHhhcCCC---------------CCcEE
Q 001998 259 IEELEGSATDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDYR----KWEPFRNCLMNGL---------------RGSKI 319 (984)
Q Consensus 259 ~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~----~~~~l~~~l~~~~---------------~gs~i 319 (984)
...++. ....+...+..... ..-+++||++..-... ....+...+.... ....|
T Consensus 155 ~~~ig~------~~~~~~~~~~~a~~-~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~i 227 (543)
T 3m6a_A 155 RTYVGA------MPGRIIQGMKKAGK-LNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLF 227 (543)
T ss_dssp ---------------CHHHHHHTTCS-SSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEE
T ss_pred HHHhcc------CchHHHHHHHHhhc-cCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEE
Confidence 111110 00111222222222 3338889999653222 1233333332111 23467
Q ss_pred EEEccchH-----HHhhcCCCCeEeCCCCChHhHHHHHHHHh
Q 001998 320 LLTTRKET-----VARMMESTDIVYVQGLSEPECWSLFRRFA 356 (984)
Q Consensus 320 iiTtr~~~-----v~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 356 (984)
|.||.... +...+ ..+.+.+++.++-.+++..+.
T Consensus 228 I~ttN~~~~l~~aL~~R~---~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 228 IATANNLATIPGPLRDRM---EIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp EEECSSTTTSCHHHHHHE---EEEECCCCCHHHHHHHHHHTH
T ss_pred EeccCccccCCHHHHhhc---ceeeeCCCCHHHHHHHHHHHH
Confidence 77766532 22223 467889999888888776643
No 240
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.24 E-value=0.0079 Score=58.17 Aligned_cols=117 Identities=19% Similarity=0.088 Sum_probs=65.4
Q ss_pred EEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecC---CCCHHHHHHHHHHHh---c----CCCCC----cccHH
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSD---PFDEFSVAKAIIEEL---E----GSATD----LHELN 273 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~---~~~~~~~~~~i~~~l---~----~~~~~----~~~~~ 273 (984)
..|-|++-.|.||||.|-...- +..++=..+.++.... .....+++..+.-.+ + ....+ .....
T Consensus 29 g~i~v~tG~GkGKTTaA~Glal--RA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~ 106 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAA--RAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACM 106 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHH--HHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHH
Confidence 4566777777999999966554 2333333455554433 223333443331000 0 00000 01123
Q ss_pred HHHHHHHHHhCCCce-EEEEEcCCC---CCcCChhhHHHhhcCCCCCcEEEEEccch
Q 001998 274 SLLRRIGANIAGQKF-FMVLDNLWT---DDYRKWEPFRNCLMNGLRGSKILLTTRKE 326 (984)
Q Consensus 274 ~~~~~l~~~l~~kr~-LlVlDdvw~---~~~~~~~~l~~~l~~~~~gs~iiiTtr~~ 326 (984)
......++.+.+.+| |||||++-. -.....+.+...+........||+|+|..
T Consensus 107 ~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 107 AVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 344556666666666 999999821 12345566777777766778999999985
No 241
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.94 E-value=0.026 Score=59.49 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=21.8
Q ss_pred ceEEEEEEecCcchHHHHHHHHhcC
Q 001998 206 TVQIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
..+.+.++|++|+|||+||+.+++.
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3567889999999999999999983
No 242
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=95.93 E-value=0.094 Score=56.68 Aligned_cols=157 Identities=10% Similarity=-0.034 Sum_probs=99.4
Q ss_pred eEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHH-HhCC
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAIIEELEGSATDLHELNSLLRRIGA-NIAG 285 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~ 285 (984)
.++..++|..|.||++.|+.+.+.. ....|+....+.+....+. .++.+.+.. -+.+
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~---------------------~~l~~~~~~~plf~ 75 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVA-AAQGFEEHHTFSIDPNTDW---------------------NAIFSLCQAMSLFA 75 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHH-HHHTCCEEEEEECCTTCCH---------------------HHHHHHHHHHHHCC
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHH-HhCCCCeeEEEEecCCCCH---------------------HHHHHHhcCcCCcc
Confidence 4578899999999999998887631 1234543222222222233 333333221 2346
Q ss_pred CceEEEEEcCCC-CCcCChhhHHHhhcCCCCCcEEEEEccc-------hHHHhhc-CCCCeEeCCCCChHhHHHHHHHHh
Q 001998 286 QKFFMVLDNLWT-DDYRKWEPFRNCLMNGLRGSKILLTTRK-------ETVARMM-ESTDIVYVQGLSEPECWSLFRRFA 356 (984)
Q Consensus 286 kr~LlVlDdvw~-~~~~~~~~l~~~l~~~~~gs~iiiTtr~-------~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~ 356 (984)
++-++|+|++.. .....++.+...+.....++.+|++|.. ..+...+ .....++..+++.++....+.+.+
T Consensus 76 ~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~~ 155 (343)
T 1jr3_D 76 SRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARA 155 (343)
T ss_dssp SCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHHH
Confidence 677889999865 4445677788888766667887776643 2344443 335688899999999888887766
Q ss_pred cCCCCCCCchhHHHHHHHHHHhcCCChHHHHHH
Q 001998 357 FSGRTPLECDQLEEIGRGIVRKCKGLPLAAKTI 389 (984)
Q Consensus 357 ~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~ 389 (984)
-..+...+ .+.+..+++.++|.+.++...
T Consensus 156 ~~~g~~i~----~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 156 KQLNLELD----DAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp HHTTCEEC----HHHHHHHHHSSTTCHHHHHHH
T ss_pred HHcCCCCC----HHHHHHHHHHhchHHHHHHHH
Confidence 43322112 355667999999988877653
No 243
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.86 E-value=0.0062 Score=60.85 Aligned_cols=113 Identities=14% Similarity=-0.006 Sum_probs=63.4
Q ss_pred eEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHHHHHhcCCCC--CcccHHHHHHHHHHHhC
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAIIEELEGSAT--DLHELNSLLRRIGANIA 284 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~l~~~l~ 284 (984)
-.++.|+|..|.||||++..+... ...+-..++.+..... .+ ....+++.++.... ......++...+.+.+.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r--~~~~g~kVli~~~~~d--~r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~ 86 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHR--LEYADVKYLVFKPKID--TR-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNSF 86 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHH--HHHTTCCEEEEEECCC--GG-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTS
T ss_pred cEEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEEeccC--ch-HHHHHHHhcCCCccccccCCHHHHHHHHHHHhh
Confidence 468899999999999999877763 3333333444433322 12 22234444432211 12233455666666555
Q ss_pred CCce-EEEEEcCCCCCcCChhhHHHhhcCCCCCcEEEEEccchH
Q 001998 285 GQKF-FMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILLTTRKET 327 (984)
Q Consensus 285 ~kr~-LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~ 327 (984)
+.++ +||+|.+..-+.+..+.+. .+.+ .|-.||+|-+..+
T Consensus 87 ~~~~dvViIDEaQ~l~~~~ve~l~-~L~~--~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 87 NDETKVIGIDEVQFFDDRICEVAN-ILAE--NGFVVIISGLDKN 127 (223)
T ss_dssp CTTCCEEEECSGGGSCTHHHHHHH-HHHH--TTCEEEEECCSBC
T ss_pred CCCCCEEEEecCccCcHHHHHHHH-HHHh--CCCeEEEEecccc
Confidence 5555 9999999543322233332 2333 2778999998543
No 244
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.86 E-value=0.08 Score=58.14 Aligned_cols=57 Identities=9% Similarity=0.082 Sum_probs=28.7
Q ss_pred ccccccccccccCCCCcccccCCCCcccCCcccEEeeecCcCCCCCCc-CCCCCCCcCeEEec
Q 001998 869 AFPKLKELTLFHLDGCEEWDFGKEDVIIMPQLCYLDIRFCRKLKSLPD-QLLQSSTLEKLRII 930 (984)
Q Consensus 869 ~f~~L~~L~l~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~i~ 930 (984)
++++|+.+.+.+ .....++...|..+++|+.+.|..+ ++.+.. .+.+|++|+.+.|-
T Consensus 284 ~c~~L~~i~l~~---~~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 284 GCSNLTKVVMDN---SAIETLEPRVFMDCVKLSSVTLPTA--LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp TCTTCCEEEECC---TTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCCCCCC
T ss_pred cccccccccccc---cccceehhhhhcCCCCCCEEEcCcc--ccEEHHHHhhCCCCCCEEEEC
Confidence 345555554422 1112234444556666776666532 445443 34456666666653
No 245
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.72 E-value=0.042 Score=60.35 Aligned_cols=50 Identities=18% Similarity=0.223 Sum_probs=34.1
Q ss_pred cccccHHHHHHHHHHHhc----CCC-------------------CCCCCceEEEEEEecCcchHHHHHHHHhc
Q 001998 180 EVRGRDEEMRTLKSMLLC----QGS-------------------DQQTNTVQIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 180 ~~~Gr~~~~~~l~~~L~~----~~~-------------------~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
.++|.+..++.+...+.. ... .........+.++|..|+|||++|+.+++
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHH
Confidence 578888888888776620 000 00001234578999999999999999987
No 246
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.62 E-value=0.072 Score=63.48 Aligned_cols=181 Identities=11% Similarity=0.108 Sum_probs=96.7
Q ss_pred CCcccccHHHHHHHHHHHh----cCC--CCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCH
Q 001998 178 VSEVRGRDEEMRTLKSMLL----CQG--SDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDE 251 (984)
Q Consensus 178 ~~~~~Gr~~~~~~l~~~L~----~~~--~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~ 251 (984)
-.++.|.++.+++|.+.+. .+. ...+-...+-|.++|.+|.|||+||+.+++. ...+| +.|+.+
T Consensus 203 ~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~e--lg~~~---~~v~~~----- 272 (806)
T 3cf2_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGP----- 272 (806)
T ss_dssp GGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTT--TTCEE---EEEEHH-----
T ss_pred hhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCeE---EEEEhH-----
Confidence 3467888887777776543 111 0001234567889999999999999999984 33332 334322
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCceEEEEEcCCCCC------cCCh-hh----HHHhhcC--CCCCcE
Q 001998 252 FSVAKAIIEELEGSATDLHELNSLLRRIGANIAGQKFFMVLDNLWTDD------YRKW-EP----FRNCLMN--GLRGSK 318 (984)
Q Consensus 252 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~------~~~~-~~----l~~~l~~--~~~gs~ 318 (984)
+ +. ....+ .....+...+.......+.+|++|++..-- .... .. +...+.. ...+-.
T Consensus 273 -~----l~----sk~~g-ese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~ 342 (806)
T 3cf2_A 273 -E----IM----SKLAG-ESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (806)
T ss_dssp -H----HH----SSCTT-HHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEE
T ss_pred -H----hh----cccch-HHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEE
Confidence 1 11 11111 112233344444556788999999985411 1111 11 2222211 122344
Q ss_pred EEEEccchH-HHhhcC---C-CCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCCh
Q 001998 319 ILLTTRKET-VARMME---S-TDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLP 383 (984)
Q Consensus 319 iiiTtr~~~-v~~~~~---~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlP 383 (984)
||.||...+ +-..+. . ...+++...+.++-.++|..+...... ..+-++.. |++++.|.-
T Consensus 343 VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~-~~dvdl~~----lA~~T~Gfs 407 (806)
T 3cf2_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL-ADDVDLEQ----VANETHGHV 407 (806)
T ss_dssp EEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEE-CTTCCHHH----HHHHCCSCC
T ss_pred EEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCC-CcccCHHH----HHHhcCCCC
Confidence 566666543 222221 1 347788888888888888765432211 22223444 777777764
No 247
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.53 E-value=0.027 Score=57.03 Aligned_cols=114 Identities=11% Similarity=0.035 Sum_probs=60.7
Q ss_pred EEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHHHHHhcCCCC--------------------
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAIIEELEGSAT-------------------- 267 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-------------------- 267 (984)
.++.|+|.+|+|||||++.+..... ..-..++|+.... ....+...+. .++....
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~--~~~~~v~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGL--RDGDPCIYVTTEE--SRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEKEDQ 98 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH--HHTCCEEEEESSS--CHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC----CT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH--HCCCeEEEEEccc--CHHHHHHHHH-HhcchHHHHhhCCEEEEeccccccCce
Confidence 5889999999999999999885321 1112456665433 4444444332 3321100
Q ss_pred ---CcccHHHHHHHHHHHhC-CCc--eEEEEEcCCCC---CcCChhhHHHhhcC--CCCCcEEEEEccch
Q 001998 268 ---DLHELNSLLRRIGANIA-GQK--FFMVLDNLWTD---DYRKWEPFRNCLMN--GLRGSKILLTTRKE 326 (984)
Q Consensus 268 ---~~~~~~~~~~~l~~~l~-~kr--~LlVlDdvw~~---~~~~~~~l~~~l~~--~~~gs~iiiTtr~~ 326 (984)
...+.+++...+...+. .+. .+||+|..-.- +......+...+.. ...|.-||++|...
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 99 WSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp TBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred eeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 01144555555544432 233 49999998531 22223334333332 13477888888764
No 248
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.52 E-value=0.023 Score=68.82 Aligned_cols=159 Identities=11% Similarity=0.084 Sum_probs=85.6
Q ss_pred CCcccccHHHHHHHHHHHhcC----C--CCCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCH
Q 001998 178 VSEVRGRDEEMRTLKSMLLCQ----G--SDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDE 251 (984)
Q Consensus 178 ~~~~~Gr~~~~~~l~~~L~~~----~--~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~ 251 (984)
-.+++|.+..++++.+++... . ....-.....+.|+|.+|+||||||+.+.+. ....| +.+..+
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~--l~~~~---i~v~~~----- 272 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGP----- 272 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHT--TTCEE---EEEEHH-----
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCcE---EEEEch-----
Confidence 357899999998888877531 0 0000123346889999999999999999873 32222 333321
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCceEEEEEcCCCCCc------C-----ChhhHHHhhcCC--CCCcE
Q 001998 252 FSVAKAIIEELEGSATDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDY------R-----KWEPFRNCLMNG--LRGSK 318 (984)
Q Consensus 252 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~------~-----~~~~l~~~l~~~--~~gs~ 318 (984)
.+...... .....+...++........++++|++..-.. . ....+...+... ..+..
T Consensus 273 ---------~l~~~~~g-~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~ 342 (806)
T 1ypw_A 273 ---------EIMSKLAG-ESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (806)
T ss_dssp ---------HHSSSSTT-HHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCE
T ss_pred ---------Hhhhhhhh-hHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEE
Confidence 11111111 1112233334444445678999999843110 0 011222222221 23446
Q ss_pred EEEEccchH-HHhhcC---C-CCeEeCCCCChHhHHHHHHHHh
Q 001998 319 ILLTTRKET-VARMME---S-TDIVYVQGLSEPECWSLFRRFA 356 (984)
Q Consensus 319 iiiTtr~~~-v~~~~~---~-~~~~~l~~L~~~~~~~lf~~~~ 356 (984)
+|.||.... +...+. . ...+.+...+.++-.+++...+
T Consensus 343 vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp EEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred EecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHH
Confidence 666666542 211111 1 2456788888888888887665
No 249
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.51 E-value=0.14 Score=53.28 Aligned_cols=181 Identities=13% Similarity=0.079 Sum_probs=88.5
Q ss_pred cCCcccccHHHHHHHHHHHhcCCCC-----CC-CCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCC
Q 001998 177 DVSEVRGRDEEMRTLKSMLLCQGSD-----QQ-TNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFD 250 (984)
Q Consensus 177 ~~~~~~Gr~~~~~~l~~~L~~~~~~-----~~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~ 250 (984)
.-.+++|.+..++++.+....-... .. .-... +.|+|..|+||||||+.+++. .. ...+.+...
T Consensus 38 ~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~g-vll~Gp~GtGKTtl~~~i~~~--~~---~~~i~~~~~---- 107 (278)
T 1iy2_A 38 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAGE--AR---VPFITASGS---- 107 (278)
T ss_dssp CGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCE-EEEECCTTSSHHHHHHHHHHH--TT---CCEEEEEHH----
T ss_pred CHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCe-EEEECCCcChHHHHHHHHHHH--cC---CCEEEecHH----
Confidence 3457899988777766544221000 00 00112 889999999999999999973 22 223333221
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCceEEEEEcCCCCC----------cCChhh----HHHhhcCCC--
Q 001998 251 EFSVAKAIIEELEGSATDLHELNSLLRRIGANIAGQKFFMVLDNLWTDD----------YRKWEP----FRNCLMNGL-- 314 (984)
Q Consensus 251 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~----------~~~~~~----l~~~l~~~~-- 314 (984)
.+ ..... . .....+...++..-.....++|+|++..-. ...+.. +...+..+.
T Consensus 108 --~~----~~~~~----~-~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~ 176 (278)
T 1iy2_A 108 --DF----VEMFV----G-VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD 176 (278)
T ss_dssp --HH----HHSTT----T-HHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTT
T ss_pred --HH----HHHHh----h-HHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCC
Confidence 11 11100 0 001112222333323456899999983210 011111 222222222
Q ss_pred CCcEEEEEccchHHHh-h-c---CCCCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCCh
Q 001998 315 RGSKILLTTRKETVAR-M-M---ESTDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLP 383 (984)
Q Consensus 315 ~gs~iiiTtr~~~v~~-~-~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlP 383 (984)
....++.||...++.. . . .-...+.+...+.++-.+++...+-.... .....+. .+++.+.|..
T Consensus 177 ~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~-~~~~~~~----~la~~~~G~~ 245 (278)
T 1iy2_A 177 TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPL-AEDVDLA----LLAKRTPGFV 245 (278)
T ss_dssp CCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCB-CTTCCHH----HHHHTCTTCC
T ss_pred CCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCC-CcccCHH----HHHHHcCCCC
Confidence 2234445565543321 1 1 22457888888888888888776532111 1111222 3666776654
No 250
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.44 E-value=0.035 Score=56.62 Aligned_cols=88 Identities=16% Similarity=0.133 Sum_probs=51.4
Q ss_pred EEEEEEecCcchHHHHHHHHhcCccccc----CCCeEEEEEecCCCCHHHHHHHHHHHhcCCC------------CCccc
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYNDNDVIN----NFEIRVWVCVSDPFDEFSVAKAIIEELEGSA------------TDLHE 271 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~------------~~~~~ 271 (984)
.++.|+|.+|+|||||++.+........ .-..++|+.....++...+. ++++.++... ....+
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~ 103 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNTDH 103 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCHHH
Confidence 4899999999999999998876311111 23578899877765554433 3444443221 01111
Q ss_pred HHHHHHHHHHHhC-CCceEEEEEcCC
Q 001998 272 LNSLLRRIGANIA-GQKFFMVLDNLW 296 (984)
Q Consensus 272 ~~~~~~~l~~~l~-~kr~LlVlDdvw 296 (984)
.......+.+.+. .+.-+||+|.+.
T Consensus 104 ~~~~~~~~~~~~~~~~~~lliiD~~~ 129 (243)
T 1n0w_A 104 QTQLLYQASAMMVESRYALLIVDSAT 129 (243)
T ss_dssp HHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHHHHhcCCceEEEEeCch
Confidence 1222333444443 466788999884
No 251
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.43 E-value=0.037 Score=59.50 Aligned_cols=84 Identities=18% Similarity=0.185 Sum_probs=54.2
Q ss_pred ceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHHHHHhcCCCC-----CcccHHHHHHHHH
Q 001998 206 TVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAIIEELEGSAT-----DLHELNSLLRRIG 280 (984)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 280 (984)
.-+++.|+|.+|+||||||..+... ....=..++|++....++.. .++.++.... ...+.++....+.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~--~~~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAE--AQKMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 3469999999999999999988863 22222357888877777654 3444443211 1234555555555
Q ss_pred HHhC-CCceEEEEEcCC
Q 001998 281 ANIA-GQKFFMVLDNLW 296 (984)
Q Consensus 281 ~~l~-~kr~LlVlDdvw 296 (984)
..++ .+.-++|+|.+-
T Consensus 133 ~l~~~~~~dlvVIDSi~ 149 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSVA 149 (356)
T ss_dssp HHHHTSCCSEEEEECTT
T ss_pred HHhhhcCCCeEEehHhh
Confidence 5443 455689999984
No 252
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.23 E-value=0.061 Score=57.98 Aligned_cols=57 Identities=14% Similarity=0.142 Sum_probs=39.9
Q ss_pred ceEEEEEEecCcchHHHHHHHHhcCcccc----cCCCeEEEEEecCCCCHHHHHHHHHHHhc
Q 001998 206 TVQIFSMVGMGGIGKTTLAQLAYNDNDVI----NNFEIRVWVCVSDPFDEFSVAKAIIEELE 263 (984)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 263 (984)
.-.++.|+|.+|+||||||..++...... +.-..++|++....++...+.. +++.++
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g 181 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFN 181 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcC
Confidence 45789999999999999998887632111 1234788999888877766543 444443
No 253
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.16 E-value=0.044 Score=58.68 Aligned_cols=57 Identities=14% Similarity=0.185 Sum_probs=39.5
Q ss_pred ceEEEEEEecCcchHHHHHHHHhcCccccc---------CC-----CeEEEEEecCCCCHHHHHHHHHHHhc
Q 001998 206 TVQIFSMVGMGGIGKTTLAQLAYNDNDVIN---------NF-----EIRVWVCVSDPFDEFSVAKAIIEELE 263 (984)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---------~F-----~~~~wv~~s~~~~~~~~~~~i~~~l~ 263 (984)
.-.++.|+|.+|+||||||..++....... .. ..++|++....++...+.+ +++.++
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g 167 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAG 167 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcC
Confidence 346899999999999999988775321111 11 4788999888887776654 345554
No 254
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.13 E-value=0.15 Score=52.83 Aligned_cols=126 Identities=11% Similarity=0.047 Sum_probs=66.3
Q ss_pred EEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCcccHHH-HHHHHHHHhCCCce
Q 001998 210 FSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAIIEELEGSATDLHELNS-LLRRIGANIAGQKF 288 (984)
Q Consensus 210 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~-~~~~l~~~l~~kr~ 288 (984)
+.++|.+|.||||||+.+++. ... ..+++....-.+. . ..+... +....+..-...+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~--~~~---~~i~i~g~~l~~~--------------~--~~~~~~~i~~vf~~a~~~~p~ 105 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE--SGL---NFISVKGPELLNM--------------Y--VGESERAVRQVFQRAKNSAPC 105 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH--TTC---EEEEEETTTTCSS--------------T--THHHHHHHHHHHHHHHHTCSE
T ss_pred EEEECCCCCcHHHHHHHHHHH--cCC---CEEEEEcHHHHhh--------------h--hhHHHHHHHHHHHHHHhcCCC
Confidence 899999999999999999873 221 2344432221100 0 000111 11122222234578
Q ss_pred EEEEEcCCCCCc-------CC----hhhHHHhhcCC--CCCcEEEEEccchHHHhh-c----CCCCeEeCCCCChHhHHH
Q 001998 289 FMVLDNLWTDDY-------RK----WEPFRNCLMNG--LRGSKILLTTRKETVARM-M----ESTDIVYVQGLSEPECWS 350 (984)
Q Consensus 289 LlVlDdvw~~~~-------~~----~~~l~~~l~~~--~~gs~iiiTtr~~~v~~~-~----~~~~~~~l~~L~~~~~~~ 350 (984)
++++|++..-.. .. ...+...+..+ ....-++.+|...++... + .-...+.+...+.++-.+
T Consensus 106 i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~ 185 (274)
T 2x8a_A 106 VIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLA 185 (274)
T ss_dssp EEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHH
T ss_pred eEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHH
Confidence 999999854110 01 11222223322 234445566666544321 1 124567788888888888
Q ss_pred HHHHHh
Q 001998 351 LFRRFA 356 (984)
Q Consensus 351 lf~~~~ 356 (984)
+|....
T Consensus 186 il~~~~ 191 (274)
T 2x8a_A 186 ILKTIT 191 (274)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 887765
No 255
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.09 E-value=0.061 Score=58.22 Aligned_cols=83 Identities=17% Similarity=0.111 Sum_probs=53.8
Q ss_pred eEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHHHHHhcCCCC-----CcccHHHHHHHHHH
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAIIEELEGSAT-----DLHELNSLLRRIGA 281 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~ 281 (984)
-+++.|.|.+|+||||||..+... ....-..++|++....++.. .++.++.... ...+.+++...+..
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~--~~~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~~ 146 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQ--AQKAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMEL 146 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHH--HHHCCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHHH
Confidence 347888999999999999887763 22223478999988777654 2344433211 11345666666665
Q ss_pred HhC-CCceEEEEEcCC
Q 001998 282 NIA-GQKFFMVLDNLW 296 (984)
Q Consensus 282 ~l~-~kr~LlVlDdvw 296 (984)
..+ .+.-+||+|.+-
T Consensus 147 l~~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 147 LVRSGAIDVVVVDSVA 162 (366)
T ss_dssp HHTTTCCSEEEEECTT
T ss_pred HHhcCCCCEEEEeChH
Confidence 554 345599999984
No 256
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.07 E-value=0.058 Score=57.73 Aligned_cols=56 Identities=16% Similarity=0.131 Sum_probs=38.9
Q ss_pred eEEEEEEecCcchHHHHHHHHhcCcccc----cCCCeEEEEEecCCCCHHHHHHHHHHHhc
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYNDNDVI----NNFEIRVWVCVSDPFDEFSVAKAIIEELE 263 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 263 (984)
-.++.|+|.+|+||||||..++...... +.-..++|++....++...+. ++++.++
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g 166 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALG 166 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTT
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhC
Confidence 3588999999999999998887532111 012478999988887776655 3445553
No 257
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.04 E-value=0.051 Score=57.07 Aligned_cols=85 Identities=12% Similarity=0.073 Sum_probs=44.0
Q ss_pred eEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecC-CCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCC
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSD-PFDEFSVAKAIIEELEGSATDLHELNSLLRRIGANIAG 285 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 285 (984)
.++++|+|.+|+||||++..+......... ..+..+.... .....+.+....+..+.......+...+...+.. + .
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G-~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~-~-~ 181 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKH-KKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKEL-F-S 181 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTC-CCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHH-G-G
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcC-CEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHH-h-c
Confidence 469999999999999999988763221112 2344554332 2223333333333332221111223334444443 3 3
Q ss_pred CceEEEEEc
Q 001998 286 QKFFMVLDN 294 (984)
Q Consensus 286 kr~LlVlDd 294 (984)
+.=++|+|-
T Consensus 182 ~~dlvIiDT 190 (296)
T 2px0_A 182 EYDHVFVDT 190 (296)
T ss_dssp GSSEEEEEC
T ss_pred CCCEEEEeC
Confidence 345788894
No 258
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=94.95 E-value=0.063 Score=57.87 Aligned_cols=83 Identities=17% Similarity=0.147 Sum_probs=53.0
Q ss_pred eEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHHHHHhcCCCC-----CcccHHHHHHHHHH
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAIIEELEGSAT-----DLHELNSLLRRIGA 281 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~ 281 (984)
-+++.|+|.+|+||||||.++... ....=..++|++....++.. .++.++.... ...+.++....+..
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~--~~~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~~ 133 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVAN--AQAAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIADM 133 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 458999999999999999888753 22223468899888777653 2344443211 11235555555554
Q ss_pred HhC-CCceEEEEEcCC
Q 001998 282 NIA-GQKFFMVLDNLW 296 (984)
Q Consensus 282 ~l~-~kr~LlVlDdvw 296 (984)
... .+.-+||+|.+-
T Consensus 134 l~~~~~~~lIVIDsl~ 149 (349)
T 2zr9_A 134 LVRSGALDIIVIDSVA 149 (349)
T ss_dssp HHTTTCCSEEEEECGG
T ss_pred HHhcCCCCEEEEcChH
Confidence 443 345699999984
No 259
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=94.94 E-value=0.22 Score=56.24 Aligned_cols=178 Identities=13% Similarity=0.085 Sum_probs=90.9
Q ss_pred cCCcccccHHHHHHHHHHHhc---CCC--CCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCH
Q 001998 177 DVSEVRGRDEEMRTLKSMLLC---QGS--DQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDE 251 (984)
Q Consensus 177 ~~~~~~Gr~~~~~~l~~~L~~---~~~--~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~ 251 (984)
.-.+++|.+..++++.+.... ... +....-.+-+.|+|.+|.||||||+.+++. ... ..+.++.+.-..
T Consensus 29 ~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~--~~~---~~i~i~g~~~~~- 102 (499)
T 2dhr_A 29 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE--ARV---PFITASGSDFVE- 102 (499)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHH--TTC---CEEEEEGGGGTS-
T ss_pred CHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHH--hCC---CEEEEehhHHHH-
Confidence 345789999887777665432 100 000011123889999999999999999973 222 233443321100
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhC----CCceEEEEEcCCCCCc----------CCh----hhHHHhhcCC
Q 001998 252 FSVAKAIIEELEGSATDLHELNSLLRRIGANIA----GQKFFMVLDNLWTDDY----------RKW----EPFRNCLMNG 313 (984)
Q Consensus 252 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~kr~LlVlDdvw~~~~----------~~~----~~l~~~l~~~ 313 (984)
... ......+...++ ..+.++++|++..-.. +.+ ..+...+..+
T Consensus 103 -------------~~~-----g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~ 164 (499)
T 2dhr_A 103 -------------MFV-----GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGF 164 (499)
T ss_dssp -------------SCT-----THHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGC
T ss_pred -------------hhh-----hhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccc
Confidence 000 011122222232 2357999999943110 111 1222223222
Q ss_pred --CCCcEEEEEccchHHHh-hc-C---CCCeEeCCCCChHhHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhcCCCh
Q 001998 314 --LRGSKILLTTRKETVAR-MM-E---STDIVYVQGLSEPECWSLFRRFAFSGRTPLECDQLEEIGRGIVRKCKGLP 383 (984)
Q Consensus 314 --~~gs~iiiTtr~~~v~~-~~-~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~~~GlP 383 (984)
..+..|+.||...++.. .+ . -...+.+...+.++-.+++..++-... ......+. .|++.+.|..
T Consensus 165 ~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~-l~~dv~l~----~lA~~t~G~~ 236 (499)
T 2dhr_A 165 EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKP-LAEDVDLA----LLAKRTPGFV 236 (499)
T ss_dssp CSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSC-CCCSSTTH----HHHTTSCSCC
T ss_pred ccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCC-CChHHHHH----HHHHhcCCCC
Confidence 23445666666655422 11 1 134778888888888888876653211 11111222 3677777765
No 260
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.94 E-value=0.025 Score=55.84 Aligned_cols=43 Identities=23% Similarity=0.252 Sum_probs=33.7
Q ss_pred ccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhc
Q 001998 183 GRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 183 Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
.|++.++.+.+.+.... .....+++|+|..|.||||+++.+..
T Consensus 2 ~~~~~~~~l~~~~~~~~----~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIK----TAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp CHHHHHHHHHHHHHTSC----CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhc----cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 35667788888776532 23467999999999999999998876
No 261
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.88 E-value=0.087 Score=54.87 Aligned_cols=84 Identities=11% Similarity=0.105 Sum_probs=53.3
Q ss_pred EEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCC-----cccHHHH-HHHHHHH
Q 001998 209 IFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAIIEELEGSATD-----LHELNSL-LRRIGAN 282 (984)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~-~~~l~~~ 282 (984)
++-|.|.+|+||||||.++.........=..++||+....++.. .+++++..... ..+.++. ...+...
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l 104 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQL 104 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence 68999999999999998776532211112468899888887764 25666544221 1244454 3333222
Q ss_pred --h-CCCceEEEEEcCCC
Q 001998 283 --I-AGQKFFMVLDNLWT 297 (984)
Q Consensus 283 --l-~~kr~LlVlDdvw~ 297 (984)
+ .++.-+||+|-+..
T Consensus 105 ~~i~~~~~~lvVIDSI~a 122 (333)
T 3io5_A 105 DAIERGEKVVVFIDSLGN 122 (333)
T ss_dssp HTCCTTCCEEEEEECSTT
T ss_pred HHhhccCceEEEEecccc
Confidence 2 45678999999854
No 262
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.83 E-value=0.2 Score=50.33 Aligned_cols=23 Identities=30% Similarity=0.590 Sum_probs=20.9
Q ss_pred EEEEEEecCcchHHHHHHHHhcC
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
.+++|+|..|.|||||.+.+..-
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999873
No 263
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.70 E-value=0.11 Score=52.69 Aligned_cols=23 Identities=26% Similarity=0.471 Sum_probs=20.9
Q ss_pred EEEEEEecCcchHHHHHHHHhcC
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
.+++|+|..|.|||||++.+..-
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999874
No 264
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.56 E-value=0.036 Score=50.11 Aligned_cols=51 Identities=22% Similarity=0.294 Sum_probs=34.0
Q ss_pred ecCCCCccc--cCcccccccCccceEEecCCCccccch-hhccCCcccEEeccccc
Q 001998 596 DDGGENTVH--DIPREIEKLIHLRSLRLAGLKIEELPE-TCCKLFNLQTLDINECY 648 (984)
Q Consensus 596 v~l~~~~i~--~lp~~i~~L~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~ 648 (984)
|+.+++.++ .+|..+. .+|++|+|++|.|+.+|. .+..+++|++|+|++|.
T Consensus 13 v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 13 VDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 366666666 6765432 357777777777777765 35667777777777765
No 265
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.41 E-value=0.23 Score=50.44 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=20.8
Q ss_pred eEEEEEEecCcchHHHHHHHHhc
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
-.+++|+|..|.|||||.+.+..
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999876
No 266
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=94.36 E-value=0.086 Score=56.84 Aligned_cols=83 Identities=17% Similarity=0.125 Sum_probs=51.7
Q ss_pred eEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHHHHHhcCCCC-----CcccHHHHHHHHHH
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAIIEELEGSAT-----DLHELNSLLRRIGA 281 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~ 281 (984)
-+++.|.|.+|+||||||..+... ....-..++|++....++... ++.++.... ...+.+++...+..
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~--~~~~g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~~~ 135 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDA 135 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHHHH
Confidence 458899999999999999888763 222234688999887776442 344433211 11234444444443
Q ss_pred Hh-CCCceEEEEEcCC
Q 001998 282 NI-AGQKFFMVLDNLW 296 (984)
Q Consensus 282 ~l-~~kr~LlVlDdvw 296 (984)
.. ..+.-+||+|.+-
T Consensus 136 l~~~~~~~lVVIDsl~ 151 (356)
T 1u94_A 136 LARSGAVDVIVVDSVA 151 (356)
T ss_dssp HHHHTCCSEEEEECGG
T ss_pred HHhccCCCEEEEcCHH
Confidence 33 2445599999973
No 267
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.35 E-value=0.089 Score=55.47 Aligned_cols=38 Identities=11% Similarity=0.027 Sum_probs=26.2
Q ss_pred eEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEe
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCV 245 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~ 245 (984)
-.+++|+|.+|+|||||++.+....... .-..++|+..
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~~~-~G~~v~~~~~ 72 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWGTA-MGKKVGLAML 72 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHHHT-SCCCEEEEES
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHH-cCCeEEEEeC
Confidence 3489999999999999999888642211 1114566654
No 268
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.11 E-value=0.12 Score=54.69 Aligned_cols=45 Identities=13% Similarity=0.196 Sum_probs=32.3
Q ss_pred cccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhc
Q 001998 182 RGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 182 ~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
+|....+..+...+..... .....+++|.|..|+||||||+.+..
T Consensus 70 ~~~~~~l~~~~~~~l~~~~---~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKPE---PKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp HHHHHHHHHHHHHHHTCCC---CCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHhccCC---CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4555555555555554432 34577999999999999999998865
No 269
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.81 E-value=0.25 Score=50.69 Aligned_cols=21 Identities=33% Similarity=0.406 Sum_probs=19.8
Q ss_pred EEEEEecCcchHHHHHHHHhc
Q 001998 209 IFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~ 229 (984)
+++|+|..|.|||||.+.++.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 789999999999999999986
No 270
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=93.62 E-value=0.21 Score=50.11 Aligned_cols=46 Identities=24% Similarity=0.234 Sum_probs=31.2
Q ss_pred ceEEEEEEecCcchHHHHHHHHhcCccc---cc-CCCeEEEEEecCCCCH
Q 001998 206 TVQIFSMVGMGGIGKTTLAQLAYNDNDV---IN-NFEIRVWVCVSDPFDE 251 (984)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~-~F~~~~wv~~s~~~~~ 251 (984)
.-.+++|+|..|+|||||++.+...... .. .-...+|+.-...+..
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~ 73 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRP 73 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCH
Confidence 3468999999999999999998752111 11 2345788876554443
No 271
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=93.48 E-value=0.34 Score=50.87 Aligned_cols=107 Identities=14% Similarity=0.160 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhcCCC-CCCCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHH--HHHHHHHHHh
Q 001998 186 EEMRTLKSMLLCQGS-DQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEF--SVAKAIIEEL 262 (984)
Q Consensus 186 ~~~~~l~~~L~~~~~-~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~--~~~~~i~~~l 262 (984)
.-.+++.+.|..... ........++.|+|.+|+||||++..++.. ....-..+.++... .+... +-+...++..
T Consensus 82 ~~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~--l~~~g~kV~lv~~D-~~r~~a~eqL~~~~~~~ 158 (306)
T 1vma_A 82 SLKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKM--FVDEGKSVVLAAAD-TFRAAAIEQLKIWGERV 158 (306)
T ss_dssp HHHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHH--HHHTTCCEEEEEEC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHHH--HHhcCCEEEEEccc-cccHHHHHHHHHHHHHc
Confidence 445555555543221 001234689999999999999999988863 22222234455432 23222 2223334433
Q ss_pred cCC---CCCcccHHHH-HHHHHHHhCCCceEEEEEcC
Q 001998 263 EGS---ATDLHELNSL-LRRIGANIAGQKFFMVLDNL 295 (984)
Q Consensus 263 ~~~---~~~~~~~~~~-~~~l~~~l~~kr~LlVlDdv 295 (984)
+.. .....+...+ ...+...+..+.=++|+|-.
T Consensus 159 gl~~~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtp 195 (306)
T 1vma_A 159 GATVISHSEGADPAAVAFDAVAHALARNKDVVIIDTA 195 (306)
T ss_dssp TCEEECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEEC
T ss_pred CCcEEecCCccCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 321 1111122222 33444445455558888866
No 272
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=93.46 E-value=0.23 Score=53.49 Aligned_cols=90 Identities=18% Similarity=0.210 Sum_probs=51.5
Q ss_pred ceEEEEEEecCcchHHHHHHHHhcCcccc---cCC-CeEEEEEecCCCCHHHHHHHHHHHhcCCC------------CCc
Q 001998 206 TVQIFSMVGMGGIGKTTLAQLAYNDNDVI---NNF-EIRVWVCVSDPFDEFSVAKAIIEELEGSA------------TDL 269 (984)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~F-~~~~wv~~s~~~~~~~~~~~i~~~l~~~~------------~~~ 269 (984)
.-.++.|+|..|+|||||+..++...... +.. ..++|++....+....+ ..+.+...... ...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~~ 208 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFNS 208 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCSH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCCh
Confidence 45799999999999999999887632111 111 24588887665544333 33444332210 011
Q ss_pred ccHHHHHHHHHHHhC------CCceEEEEEcCC
Q 001998 270 HELNSLLRRIGANIA------GQKFFMVLDNLW 296 (984)
Q Consensus 270 ~~~~~~~~~l~~~l~------~kr~LlVlDdvw 296 (984)
....++...+...+. .+.=+||+|.+-
T Consensus 209 ~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~t 241 (349)
T 1pzn_A 209 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLT 241 (349)
T ss_dssp HHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSS
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCEEEEeCch
Confidence 112333444444443 466799999984
No 273
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=93.44 E-value=0.25 Score=52.48 Aligned_cols=52 Identities=12% Similarity=0.088 Sum_probs=36.9
Q ss_pred eEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHHHHHh
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAIIEEL 262 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l 262 (984)
-.++.|.|.+|+||||+|..++.+.-..+ ..++|++.. .+..++...++...
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~~ 119 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVTA 119 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHHH
Confidence 35788999999999999988875322222 567777654 56777777776653
No 274
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.43 E-value=0.015 Score=56.50 Aligned_cols=107 Identities=11% Similarity=-0.021 Sum_probs=49.8
Q ss_pred EEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHHHHHhcCC--CCCcccHHHHHHHHHHHhCC
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAIIEELEGS--ATDLHELNSLLRRIGANIAG 285 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~--~~~~~~~~~~~~~l~~~l~~ 285 (984)
.++.|+|..|+||||++..+..... .... .++++.... +.+.....+...++.. .....+.. .+.+.+.+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~-~~g~-~v~~~~~~~--d~r~~~~~i~s~~g~~~~~~~~~~~~----~~~~~~~~ 75 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYK-LGKK-KVAVFKPKI--DSRYHSTMIVSHSGNGVEAHVIERPE----EMRKYIEE 75 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH-HTTC-EEEEEEEC-------CCCEECC----CEECEEESSGG----GGGGGCCT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH-HCCC-eEEEEeecc--ccccCcccEEecCCCceeeEEECCHH----HHHHHhcC
Confidence 3778999999999999966554221 1122 233332221 1000000000001100 00001111 12223334
Q ss_pred CceEEEEEcCCCCCcCChhhHHHhhcCCCCCcEEEEEccc
Q 001998 286 QKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILLTTRK 325 (984)
Q Consensus 286 kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~ 325 (984)
+.-+|++|.+..-+. .|......+.+. |..||+|.+.
T Consensus 76 ~~dvviIDE~Q~~~~-~~~~~l~~l~~~--~~~Vi~~Gl~ 112 (184)
T 2orw_A 76 DTRGVFIDEVQFFNP-SLFEVVKDLLDR--GIDVFCAGLD 112 (184)
T ss_dssp TEEEEEECCGGGSCT-THHHHHHHHHHT--TCEEEEEEES
T ss_pred CCCEEEEECcccCCH-HHHHHHHHHHHC--CCCEEEEeec
Confidence 556999999965433 354443333333 6789998874
No 275
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=93.43 E-value=0.039 Score=53.82 Aligned_cols=24 Identities=33% Similarity=0.383 Sum_probs=21.5
Q ss_pred eEEEEEEecCcchHHHHHHHHhcC
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
-.+++|+|+.|.|||||++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999999873
No 276
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=93.35 E-value=0.048 Score=58.29 Aligned_cols=82 Identities=15% Similarity=0.127 Sum_probs=45.4
Q ss_pred EEEEEEecCcchHHHHHHHHhcCccc-ccCCCeEEEEEecCCCCHHHHHHHHHHHhcC-----CCCCcccHH--------
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYNDNDV-INNFEIRVWVCVSDPFDEFSVAKAIIEELEG-----SATDLHELN-------- 273 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~-----~~~~~~~~~-------- 273 (984)
..++|+|..|.|||||++.+.+.... ...++ ++++-+.+..... .++.+.+.. ...+.....
T Consensus 175 Qr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~-~I~~lIGER~~Ev---~~~~~~~~~~vV~atadep~~~r~~~a~~al 250 (422)
T 3ice_A 175 QRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV-LMVLLIDERPEEV---TEMQRLVKGEVVASTFDEPASRHVQVAEMVI 250 (422)
T ss_dssp CEEEEECCSSSSHHHHHHHHHHHHHHHCTTSE-EEEEEESSCHHHH---HHHHTTCSSEEEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEecCCCCChhHHHHHHHHHHhhcCCCee-EEEEEecCChHHH---HHHHHHhCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 47899999999999999988763111 12333 3456666554222 223333321 111111111
Q ss_pred HHHHHHHHHhCCCceEEEEEcC
Q 001998 274 SLLRRIGANIAGQKFFMVLDNL 295 (984)
Q Consensus 274 ~~~~~l~~~l~~kr~LlVlDdv 295 (984)
...+.+++ +++.+||++||+
T Consensus 251 t~AEyfrd--~G~dVLil~Dsl 270 (422)
T 3ice_A 251 EKAKRLVE--HKKDVIILLDSI 270 (422)
T ss_dssp HHHHHHHH--TSCEEEEEEECH
T ss_pred HHHHHHHh--cCCCEEEEEeCc
Confidence 11222332 589999999998
No 277
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=93.34 E-value=0.034 Score=53.55 Aligned_cols=22 Identities=14% Similarity=0.274 Sum_probs=20.3
Q ss_pred EEEEEEecCcchHHHHHHHHhc
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
.+|.|+|++|+||||+|+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999987
No 278
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.32 E-value=0.035 Score=53.22 Aligned_cols=19 Identities=37% Similarity=0.676 Sum_probs=18.2
Q ss_pred EEEEEecCcchHHHHHHHH
Q 001998 209 IFSMVGMGGIGKTTLAQLA 227 (984)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v 227 (984)
+|+|+|+.|+||||+|+.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999999998
No 279
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=93.22 E-value=0.06 Score=53.41 Aligned_cols=38 Identities=21% Similarity=0.182 Sum_probs=28.0
Q ss_pred HHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhc
Q 001998 187 EMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 187 ~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
-.++|.+.+... .+...+++|+|..|.|||||++.+..
T Consensus 7 ~~~~~~~~~~~~-----~~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 7 LCQGVLERLDPR-----QPGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp HHHHHHHHSCTT-----CCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHHhc-----CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 445555555432 12467999999999999999998876
No 280
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=93.16 E-value=0.059 Score=60.90 Aligned_cols=42 Identities=19% Similarity=0.158 Sum_probs=35.6
Q ss_pred cccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcC
Q 001998 180 EVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 180 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
.++|++..++.+...+.... -+.++|.+|+|||+||+.+.+.
T Consensus 23 ~ivGq~~~i~~l~~al~~~~---------~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSGE---------SVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHTC---------EEEEECCSSSSHHHHHHHGGGG
T ss_pred hhHHHHHHHHHHHHHHhcCC---------eeEeecCchHHHHHHHHHHHHH
Confidence 57899999999888876432 4789999999999999999983
No 281
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=93.01 E-value=0.041 Score=52.56 Aligned_cols=22 Identities=18% Similarity=0.089 Sum_probs=20.0
Q ss_pred EEEEEEecCcchHHHHHHHHhc
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
.+|.|.|+.|+||||+|+.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999876
No 282
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.01 E-value=0.1 Score=47.05 Aligned_cols=53 Identities=21% Similarity=0.260 Sum_probs=44.1
Q ss_pred ceEEecCCCcc--ccchhhccCCcccEEeccccccccccccc-ccCCCCCCeEEeccCC
Q 001998 617 RSLRLAGLKIE--ELPETCCKLFNLQTLDINECYRLKRLPQG-VGSLVNLRHLVVSLNG 672 (984)
Q Consensus 617 r~L~L~~~~i~--~lp~~i~~L~~L~~L~L~~~~~l~~lP~~-i~~L~~L~~L~l~~~~ 672 (984)
..++.+++.++ .+|..+. .+|++|+|++|. ++.+|.+ +..+++|++|++.+|+
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCc-CCccChhhhhhccccCEEEecCCC
Confidence 47888899988 8997653 479999999998 8888865 5789999999999884
No 283
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=92.88 E-value=0.047 Score=52.61 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=20.3
Q ss_pred EEEEEEecCcchHHHHHHHHhc
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999886
No 284
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=92.80 E-value=0.041 Score=54.18 Aligned_cols=23 Identities=30% Similarity=0.332 Sum_probs=20.9
Q ss_pred eEEEEEEecCcchHHHHHHHHhc
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
..+|.|+|+.|+||||+|+.+..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 45899999999999999999986
No 285
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=92.79 E-value=0.15 Score=56.35 Aligned_cols=86 Identities=17% Similarity=0.233 Sum_probs=48.9
Q ss_pred EEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCC-HHHHHHHHHHH--hc------CCCCCcccHHH----H
Q 001998 209 IFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFD-EFSVAKAIIEE--LE------GSATDLHELNS----L 275 (984)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~-~~~~~~~i~~~--l~------~~~~~~~~~~~----~ 275 (984)
.++|+|..|+|||||++.+...... ..-+..+++.+.+..+ ..+++.++.+. +. ....+...... .
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~~~-~~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~~~ 231 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNIAQ-EHGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVALT 231 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHHH-HTCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhhhhh-ccCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHHHH
Confidence 5789999999999999998874222 2234556777776553 34444444332 00 11111111111 0
Q ss_pred HHHHHHHh---CCCceEEEEEcC
Q 001998 276 LRRIGANI---AGQKFFMVLDNL 295 (984)
Q Consensus 276 ~~~l~~~l---~~kr~LlVlDdv 295 (984)
.-.+.+++ ++++.||++||+
T Consensus 232 ~ltiAEyFrd~~G~~VLl~~D~i 254 (473)
T 1sky_E 232 GLTMAEYFRDEQGQDGLLFIDNI 254 (473)
T ss_dssp HHHHHHHHHHHSCCEEEEEEECT
T ss_pred HHHHHHHHHHhcCCcEEEEeccH
Confidence 11222322 589999999998
No 286
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=92.78 E-value=0.21 Score=54.74 Aligned_cols=56 Identities=13% Similarity=0.116 Sum_probs=36.8
Q ss_pred eEEEEEEecCcchHHHHHHHHhcCcc----cccCCCeEEEEEecCCCCHHHHHHHHHHHhc
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYNDND----VINNFEIRVWVCVSDPFDEFSVAKAIIEELE 263 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~----~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 263 (984)
-.++.|+|..|+|||||+..++-... ..+.-..++|++....+....+ +.+++.++
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~g 237 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFG 237 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTT
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcC
Confidence 35899999999999999996642111 1113356889987776665543 33555554
No 287
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=92.75 E-value=0.042 Score=53.06 Aligned_cols=23 Identities=13% Similarity=0.405 Sum_probs=20.7
Q ss_pred eEEEEEEecCcchHHHHHHHHhc
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
-++++|+|+.|+|||||++.+..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35899999999999999999876
No 288
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=92.73 E-value=0.099 Score=55.61 Aligned_cols=45 Identities=20% Similarity=0.157 Sum_probs=31.9
Q ss_pred cccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhc
Q 001998 182 RGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 182 ~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
++.+.-.+++++.+...-. ......+.|+|+.|.||||+++.++.
T Consensus 2 ~~~~~L~~~il~~l~~~i~---~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIE---DNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTT---TCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhc---cCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 4455666667666643221 22456788999999999999998887
No 289
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=92.70 E-value=0.053 Score=57.46 Aligned_cols=39 Identities=21% Similarity=0.228 Sum_probs=26.8
Q ss_pred ceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEec
Q 001998 206 TVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVS 246 (984)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s 246 (984)
+.+||+|.|-|||||||.|..+.-- ....=..+.-|.+.
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~a--LA~~GkkVllID~D 85 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSAA--FSILGKRVLQIGCD 85 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEES
T ss_pred CceEEEEECCCccCHHHHHHHHHHH--HHHCCCeEEEEecC
Confidence 5789999999999999999766542 22222235555554
No 290
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=92.67 E-value=0.26 Score=52.46 Aligned_cols=53 Identities=11% Similarity=-0.004 Sum_probs=37.3
Q ss_pred eEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHHHHHhc
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAIIEELE 263 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 263 (984)
-.++.|.|.+|+||||+|..++.+... +=..++|++. +-+..++...++....
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSl--Ems~~ql~~Rlls~~~ 98 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSL--EMSAEQLALRALSDLT 98 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEES--SSCHHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeC--CCCHHHHHHHHHHHhh
Confidence 357889999999999999888764222 2235666654 5667777777766543
No 291
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=92.65 E-value=0.76 Score=50.52 Aligned_cols=25 Identities=32% Similarity=0.349 Sum_probs=21.7
Q ss_pred ceEEEEEEecCcchHHHHHHHHhcC
Q 001998 206 TVQIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
...++.|+|.+|+||||++..+...
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~ 121 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALY 121 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999888763
No 292
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=92.65 E-value=0.56 Score=48.86 Aligned_cols=23 Identities=30% Similarity=0.590 Sum_probs=20.9
Q ss_pred EEEEEEecCcchHHHHHHHHhcC
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
.+++|+|..|.|||||.+.+..-
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 48999999999999999999873
No 293
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=92.64 E-value=0.057 Score=53.16 Aligned_cols=25 Identities=28% Similarity=0.310 Sum_probs=22.2
Q ss_pred ceEEEEEEecCcchHHHHHHHHhcC
Q 001998 206 TVQIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
...+|+|+|+.|.||||+|+.+...
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999873
No 294
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=92.60 E-value=0.57 Score=51.84 Aligned_cols=43 Identities=19% Similarity=0.154 Sum_probs=28.8
Q ss_pred HHHHHHHHHhcCCCCC--CCCceEEEEEEecCcchHHHHHHHHhc
Q 001998 187 EMRTLKSMLLCQGSDQ--QTNTVQIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 187 ~~~~l~~~L~~~~~~~--~~~~~~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
-.+++.+.|....... .....++|.++|.+|+||||+|..+..
T Consensus 78 ~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~ 122 (433)
T 2xxa_A 78 VRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGK 122 (433)
T ss_dssp HHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3445555554322110 123578999999999999999988875
No 295
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=92.53 E-value=0.62 Score=49.43 Aligned_cols=25 Identities=32% Similarity=0.312 Sum_probs=22.4
Q ss_pred ceEEEEEEecCcchHHHHHHHHhcC
Q 001998 206 TVQIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
...+++|+|..|+||||+++.+..-
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999998863
No 296
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=92.51 E-value=0.1 Score=54.60 Aligned_cols=41 Identities=20% Similarity=0.271 Sum_probs=28.1
Q ss_pred HHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhc
Q 001998 187 EMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 187 ~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
..++++..++..... .....+|.|+|++|+||||+|+.+..
T Consensus 15 ~~~~~~~~~l~~~~~--~~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 15 RLNDNLEELIQGKKA--VESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp HHHHHHHHHHTTCCC--CSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHhccccC--CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344444444433211 23467899999999999999999976
No 297
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=92.44 E-value=0.045 Score=52.37 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=20.1
Q ss_pred EEEEEEecCcchHHHHHHHHhc
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
.+|+|+|+.|+||||+++.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999986
No 298
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=92.41 E-value=0.51 Score=51.98 Aligned_cols=25 Identities=36% Similarity=0.263 Sum_probs=22.1
Q ss_pred ceEEEEEEecCcchHHHHHHHHhcC
Q 001998 206 TVQIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
..+++.++|.+|+||||++..+...
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999888763
No 299
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=92.40 E-value=0.12 Score=54.15 Aligned_cols=81 Identities=14% Similarity=0.131 Sum_probs=43.8
Q ss_pred CceEEEEEEecCcchHHHHHHHHhcCccccc-CCCeEEEEEecCCCCHHHHHHHHHHHh------cC-CCCCcccHHHHH
Q 001998 205 NTVQIFSMVGMGGIGKTTLAQLAYNDNDVIN-NFEIRVWVCVSDPFDEFSVAKAIIEEL------EG-SATDLHELNSLL 276 (984)
Q Consensus 205 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~~~~wv~~s~~~~~~~~~~~i~~~l------~~-~~~~~~~~~~~~ 276 (984)
....+|+|+|..|+||||||+.+..-....+ ....+..|+...-+-.......+.... .. ...+..+.+.+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d~~~l~ 108 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKLLQ 108 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHhccccccchhhhccCcchhHHHHHH
Confidence 3567999999999999999998876322111 123444445444333334444443321 11 113445556565
Q ss_pred HHHHHHhCC
Q 001998 277 RRIGANIAG 285 (984)
Q Consensus 277 ~~l~~~l~~ 285 (984)
+.+.....+
T Consensus 109 ~~l~~l~~g 117 (290)
T 1odf_A 109 EVLNTIFNN 117 (290)
T ss_dssp HHHHHHTC-
T ss_pred HHHHHhhcc
Confidence 555554433
No 300
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=92.36 E-value=0.11 Score=53.35 Aligned_cols=43 Identities=16% Similarity=0.180 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhc
Q 001998 185 DEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 185 ~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
+...+.+++.+...... .....+|.|+|++|.||||+|+.+..
T Consensus 12 ~~~~~~~~~~~~~~~~~--~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 12 KHALARNLRSLTRGKKS--SKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp HHHHHHHHHHHHTTCCC--CSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCc--ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34444555555543321 23467899999999999999999876
No 301
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=92.30 E-value=0.052 Score=52.64 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=20.5
Q ss_pred eEEEEEEecCcchHHHHHHHHhc
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
.+.|.|+|+.|+||||+|+.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34788999999999999999986
No 302
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=92.26 E-value=0.066 Score=52.22 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=20.3
Q ss_pred EEEEEEecCcchHHHHHHHHhc
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
.+|.|.|+.|+||||+|+.+..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999987
No 303
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=92.24 E-value=1 Score=49.68 Aligned_cols=24 Identities=38% Similarity=0.432 Sum_probs=21.5
Q ss_pred ceEEEEEEecCcchHHHHHHHHhc
Q 001998 206 TVQIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
...||.++|.+|+||||++..++.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 468999999999999999988875
No 304
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=92.23 E-value=0.064 Score=51.42 Aligned_cols=23 Identities=26% Similarity=0.547 Sum_probs=21.0
Q ss_pred eEEEEEEecCcchHHHHHHHHhc
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
-.+++|+|+.|.||||+++.+..
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 305
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=92.15 E-value=0.073 Score=51.92 Aligned_cols=23 Identities=30% Similarity=0.345 Sum_probs=21.0
Q ss_pred eEEEEEEecCcchHHHHHHHHhc
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
..+|.|.|+.|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 306
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=92.15 E-value=0.068 Score=51.09 Aligned_cols=23 Identities=26% Similarity=0.622 Sum_probs=20.1
Q ss_pred eEEEEEEecCcchHHHHHHHHhc
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
-.+++|+|..|.|||||++.++.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHcc
Confidence 46899999999999999997654
No 307
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=92.06 E-value=0.074 Score=51.77 Aligned_cols=22 Identities=23% Similarity=0.502 Sum_probs=20.1
Q ss_pred EEEEEEecCcchHHHHHHHHhc
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
.+++|+|+.|.|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999975
No 308
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=92.03 E-value=0.096 Score=57.11 Aligned_cols=50 Identities=20% Similarity=0.238 Sum_probs=35.5
Q ss_pred cccccHHHHHHHHHHHhcC-------CC-CCCCCceEEEEEEecCcchHHHHHHHHhc
Q 001998 180 EVRGRDEEMRTLKSMLLCQ-------GS-DQQTNTVQIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 180 ~~~Gr~~~~~~l~~~L~~~-------~~-~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
.++|.+..++.+...+... .. .......+.+.++|.+|+|||++|+.+++
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 4689999999888877310 00 00011335688999999999999999987
No 309
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=92.01 E-value=0.091 Score=53.97 Aligned_cols=158 Identities=11% Similarity=0.067 Sum_probs=78.3
Q ss_pred CCcccccHHHHHHHHHHHhcCCCC-----C-CCCceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCH
Q 001998 178 VSEVRGRDEEMRTLKSMLLCQGSD-----Q-QTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDE 251 (984)
Q Consensus 178 ~~~~~Gr~~~~~~l~~~L~~~~~~-----~-~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~ 251 (984)
-.+++|.+..+.++.+....-... . -.-... +.|+|..|+||||||+.+++. ... ..+.+..
T Consensus 15 ~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g-~ll~G~~G~GKTtl~~~i~~~--~~~---~~i~~~~------ 82 (254)
T 1ixz_A 15 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAGE--ARV---PFITASG------ 82 (254)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSE-EEEECCTTSSHHHHHHHHHHH--TTC---CEEEEEH------
T ss_pred HHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCe-EEEECCCCCCHHHHHHHHHHH--hCC---CEEEeeH------
Confidence 357889887766665543211000 0 000112 889999999999999999973 221 2233321
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCceEEEEEcCCCCC----------cCCh----hhHHHhhcCCC--C
Q 001998 252 FSVAKAIIEELEGSATDLHELNSLLRRIGANIAGQKFFMVLDNLWTDD----------YRKW----EPFRNCLMNGL--R 315 (984)
Q Consensus 252 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~----------~~~~----~~l~~~l~~~~--~ 315 (984)
.. +..... . .....+...++..-.....++++|++..-. ...+ ..+...+..+. .
T Consensus 83 ~~----~~~~~~----~-~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~ 153 (254)
T 1ixz_A 83 SD----FVEMFV----G-VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDT 153 (254)
T ss_dssp HH----HHHSCT----T-HHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTC
T ss_pred HH----HHHHHh----h-HHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCC
Confidence 11 111100 0 001112222333223456899999983210 0111 12222233222 2
Q ss_pred CcEEEEEccchHHHh-hc----CCCCeEeCCCCChHhHHHHHHHHh
Q 001998 316 GSKILLTTRKETVAR-MM----ESTDIVYVQGLSEPECWSLFRRFA 356 (984)
Q Consensus 316 gs~iiiTtr~~~v~~-~~----~~~~~~~l~~L~~~~~~~lf~~~~ 356 (984)
..-++.||....+.. .+ .-...+.+...+.++-.+++...+
T Consensus 154 ~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~ 199 (254)
T 1ixz_A 154 AIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA 199 (254)
T ss_dssp CEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHH
T ss_pred CEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHH
Confidence 234455666554322 11 123467888888888888887665
No 310
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=91.97 E-value=0.35 Score=53.54 Aligned_cols=53 Identities=19% Similarity=0.191 Sum_probs=38.9
Q ss_pred EEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCC-CHHHHHHHHHHH
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPF-DEFSVAKAIIEE 261 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~ 261 (984)
..++|+|..|+|||+|+..+.+.. .+.+-+..+++-+.+.. .+.++.+++.+.
T Consensus 166 qr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 219 (498)
T 1fx0_B 166 GKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEMKES 219 (498)
T ss_dssp CCEEEEECSSSSHHHHHHHHHHHT-TTTCSSCEEEEEESCCSHHHHHHHHHHHHT
T ss_pred CeEEeecCCCCCchHHHHHHHHHH-HhhCCCEEEEEEcccCcHHHHHHHHhhhcc
Confidence 358899999999999999888731 23355788888888766 455666666653
No 311
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=91.88 E-value=0.057 Score=53.27 Aligned_cols=23 Identities=17% Similarity=0.371 Sum_probs=20.7
Q ss_pred eEEEEEEecCcchHHHHHHHHhc
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
..+|+|+|+.|+||||+|+.+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999876
No 312
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=91.86 E-value=0.069 Score=52.57 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=21.0
Q ss_pred eEEEEEEecCcchHHHHHHHHhc
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
..+++|+|+.|.|||||++.+..
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999986
No 313
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=91.83 E-value=0.092 Score=51.96 Aligned_cols=24 Identities=33% Similarity=0.386 Sum_probs=21.7
Q ss_pred ceEEEEEEecCcchHHHHHHHHhc
Q 001998 206 TVQIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
...+|+|+|..|.||||+|+.+..
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999886
No 314
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=91.81 E-value=0.29 Score=49.66 Aligned_cols=38 Identities=21% Similarity=0.282 Sum_probs=27.0
Q ss_pred EEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecC
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSD 247 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~ 247 (984)
.++.|.|.+|+||||||.+++.. ....=..++|++...
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~--~~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWN--GLKMGEPGIYVALEE 61 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH--HHHTTCCEEEEESSS
T ss_pred cEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEccC
Confidence 48899999999999999877653 222224577776544
No 315
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=91.70 E-value=0.078 Score=52.34 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=20.3
Q ss_pred EEEEEEecCcchHHHHHHHHhc
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
.+++|+|..|+|||||++.+..
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHh
Confidence 4899999999999999999876
No 316
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=91.66 E-value=0.074 Score=51.76 Aligned_cols=22 Identities=36% Similarity=0.658 Sum_probs=20.2
Q ss_pred EEEEEEecCcchHHHHHHHHhc
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
.+|.|.|+.|+||||+|+.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999987
No 317
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=91.66 E-value=0.086 Score=52.34 Aligned_cols=24 Identities=33% Similarity=0.322 Sum_probs=21.5
Q ss_pred ceEEEEEEecCcchHHHHHHHHhc
Q 001998 206 TVQIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
...+++|+|..|.|||||++.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999876
No 318
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=91.63 E-value=0.078 Score=50.96 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=19.6
Q ss_pred EEEEEecCcchHHHHHHHHhcC
Q 001998 209 IFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
.++|+|..|+|||||++.+...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999988764
No 319
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=91.58 E-value=0.082 Score=52.18 Aligned_cols=21 Identities=33% Similarity=0.438 Sum_probs=19.6
Q ss_pred EEEEEecCcchHHHHHHHHhc
Q 001998 209 IFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~ 229 (984)
+|+|+|+.|+||||+++.+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999876
No 320
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=91.57 E-value=0.062 Score=52.21 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=20.0
Q ss_pred EEEEEEecCcchHHHHHHHHhc
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
++++|+|+.|+|||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999999886
No 321
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=91.56 E-value=0.63 Score=51.35 Aligned_cols=53 Identities=21% Similarity=0.243 Sum_probs=38.3
Q ss_pred EEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCC-CHHHHHHHHHHH
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPF-DEFSVAKAIIEE 261 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~ 261 (984)
..++|+|..|+|||+|+..+.+.. .+.+-+.++++-+.+.. .+.++.+++.+.
T Consensus 154 Qr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 154 GKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred CeeeeecCCCCChHHHHHHHHHhh-HhhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 368899999999999999888731 22344677888887765 355666776654
No 322
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=91.55 E-value=0.074 Score=52.72 Aligned_cols=24 Identities=25% Similarity=0.523 Sum_probs=21.4
Q ss_pred eEEEEEEecCcchHHHHHHHHhcC
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
-.+++|+|+.|+|||||++.+...
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 458999999999999999999863
No 323
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=91.55 E-value=0.094 Score=51.62 Aligned_cols=24 Identities=33% Similarity=0.394 Sum_probs=22.1
Q ss_pred ceEEEEEEecCcchHHHHHHHHhc
Q 001998 206 TVQIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
...+|+|+|+.|.||||+|+.+..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999987
No 324
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=91.54 E-value=0.083 Score=54.20 Aligned_cols=22 Identities=23% Similarity=0.175 Sum_probs=20.2
Q ss_pred EEEEEEecCcchHHHHHHHHhc
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
.++.|+|+.|+||||||+.+..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 4789999999999999999886
No 325
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=91.48 E-value=1.1 Score=50.55 Aligned_cols=25 Identities=28% Similarity=0.373 Sum_probs=20.9
Q ss_pred CceEEEEEEecCcchHHHHHHHHhc
Q 001998 205 NTVQIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 205 ~~~~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
...++|.|+|.+|+||||++.++..
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999988875
No 326
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=91.47 E-value=0.072 Score=50.66 Aligned_cols=24 Identities=33% Similarity=0.405 Sum_probs=20.7
Q ss_pred ceEEEEEEecCcchHHHHHHHHhc
Q 001998 206 TVQIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
...+|+|.|+.|+||||+|+.+..
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999886
No 327
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=91.46 E-value=0.61 Score=53.18 Aligned_cols=53 Identities=8% Similarity=-0.098 Sum_probs=36.6
Q ss_pred eEEEEEEecCcchHHHHHHHHhcCcccccC-CCeEEEEEecCCCCHHHHHHHHHHHhc
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYNDNDVINN-FEIRVWVCVSDPFDEFSVAKAIIEELE 263 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~~~wv~~s~~~~~~~~~~~i~~~l~ 263 (984)
-.++.|.|.+|+||||||..++.+ .... =..++|++. +.+..++...++....
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~--~a~~~g~~vl~~s~--E~s~~~l~~r~~~~~~ 295 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQ--WGTAMGKKVGLAML--EESVEETAEDLIGLHN 295 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHH--HTTTSCCCEEEEES--SSCHHHHHHHHHHHHT
T ss_pred CeEEEEeecCCCCchHHHHHHHHH--HHHhcCCcEEEEec--cCCHHHHHHHHHHHHc
Confidence 457889999999999999888764 2222 235777765 4456777777765543
No 328
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=91.43 E-value=0.081 Score=52.15 Aligned_cols=21 Identities=24% Similarity=0.381 Sum_probs=19.5
Q ss_pred EEEEEecCcchHHHHHHHHhc
Q 001998 209 IFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~ 229 (984)
.|+|.|+.|+||||+|+.+.+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 588999999999999999887
No 329
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=91.42 E-value=0.062 Score=51.81 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=20.6
Q ss_pred eEEEEEEecCcchHHHHHHHHhc
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
.++|.|+|+.|+||||+|+.+..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 45788999999999999999886
No 330
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=91.39 E-value=0.91 Score=48.03 Aligned_cols=25 Identities=44% Similarity=0.622 Sum_probs=22.3
Q ss_pred CceEEEEEEecCcchHHHHHHHHhc
Q 001998 205 NTVQIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 205 ~~~~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
...++++|+|.+|+||||++..++.
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999998876
No 331
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=91.35 E-value=0.17 Score=49.14 Aligned_cols=84 Identities=13% Similarity=0.051 Sum_probs=41.7
Q ss_pred CCCceeEEeccCC-Ccchh--hhHHhhhccccccee-cCCCCcccc-----CcccccccCccceEEecCCCcc-----cc
Q 001998 564 NAKKLRSLLIHSP-LEVLS--PVLKGLFDHLTYGED-DGGENTVHD-----IPREIEKLIHLRSLRLAGLKIE-----EL 629 (984)
Q Consensus 564 ~~~~Lr~L~l~~~-~~~~~--~~~~~~~~~l~~Lrv-~l~~~~i~~-----lp~~i~~L~~Lr~L~L~~~~i~-----~l 629 (984)
+-+.|+.|++.++ ..... ..+.+.+..-+.|+. ++++|.+.. +.+.+..-..|++|+|++|.|. .|
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 4456677777654 31111 112333444455555 666665542 3344444556666666666654 23
Q ss_pred chhhccCCcccEEecccc
Q 001998 630 PETCCKLFNLQTLDINEC 647 (984)
Q Consensus 630 p~~i~~L~~L~~L~L~~~ 647 (984)
-..+..-+.|++|+|++|
T Consensus 119 a~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHTTTTCCCSEEECCCC
T ss_pred HHHHhhCCceeEEECCCC
Confidence 333444445666666543
No 332
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=91.31 E-value=0.11 Score=56.19 Aligned_cols=45 Identities=20% Similarity=0.225 Sum_probs=33.0
Q ss_pred CCcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhc
Q 001998 178 VSEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 178 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
-.+++|.+..++.+...+.... ..-+.|+|..|+|||++|+.+.+
T Consensus 23 f~~i~G~~~~~~~l~~~~~~~~-------~~~vLl~G~~GtGKT~la~~la~ 67 (350)
T 1g8p_A 23 FSAIVGQEDMKLALLLTAVDPG-------IGGVLVFGDRGTGKSTAVRALAA 67 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHCGG-------GCCEEEECCGGGCTTHHHHHHHH
T ss_pred chhccChHHHHHHHHHHhhCCC-------CceEEEECCCCccHHHHHHHHHH
Confidence 3468999887766554443222 11288999999999999999987
No 333
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=91.31 E-value=0.1 Score=51.46 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=21.8
Q ss_pred ceEEEEEEecCcchHHHHHHHHhc
Q 001998 206 TVQIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
...+|+|.|+.|+||||+|+.+.+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999886
No 334
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=91.30 E-value=0.064 Score=53.00 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=20.8
Q ss_pred eEEEEEEecCcchHHHHHHHHhc
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
.++|.|+|+.|+|||||++.+..
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999876
No 335
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=91.28 E-value=0.1 Score=51.63 Aligned_cols=22 Identities=41% Similarity=0.481 Sum_probs=20.2
Q ss_pred EEEEEEecCcchHHHHHHHHhc
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
.+|+|+|+.|.||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
No 336
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=91.27 E-value=0.11 Score=50.44 Aligned_cols=25 Identities=28% Similarity=0.305 Sum_probs=22.0
Q ss_pred ceEEEEEEecCcchHHHHHHHHhcC
Q 001998 206 TVQIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
...+|.|+|+.|+||||+++.+...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999873
No 337
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=91.25 E-value=0.081 Score=50.01 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=21.3
Q ss_pred ceEEEEEEecCcchHHHHHHHHhc
Q 001998 206 TVQIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
..++++|+|..|+|||||+..+..
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999887
No 338
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=91.17 E-value=0.076 Score=50.92 Aligned_cols=21 Identities=33% Similarity=0.466 Sum_probs=19.5
Q ss_pred EEEEEecCcchHHHHHHHHhc
Q 001998 209 IFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~ 229 (984)
+|.|+|+.|+||||+|+.+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 588999999999999999986
No 339
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=91.14 E-value=0.09 Score=51.94 Aligned_cols=24 Identities=25% Similarity=0.495 Sum_probs=21.1
Q ss_pred eEEEEEEecCcchHHHHHHHHhcC
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
..+++|+|+.|+||||+++.+...
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 358999999999999999998763
No 340
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=91.11 E-value=0.5 Score=49.43 Aligned_cols=87 Identities=14% Similarity=0.074 Sum_probs=46.0
Q ss_pred eEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCC-CCHHHHHHHHHHHhcCC---CCCcccHHHHHHHHHHH
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDP-FDEFSVAKAIIEELEGS---ATDLHELNSLLRRIGAN 282 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~---~~~~~~~~~~~~~l~~~ 282 (984)
..++.++|.+|+||||++..+... ....-..+.++..... ....+.++...+..+.. .....+...+.....+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~--~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~ 175 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYF--YKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEK 175 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHH--HHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHH
Confidence 578999999999999999988763 2222224555554322 22233344444443321 11112333443333333
Q ss_pred hCCCce-EEEEEcC
Q 001998 283 IAGQKF-FMVLDNL 295 (984)
Q Consensus 283 l~~kr~-LlVlDdv 295 (984)
++.+.| ++|+|-.
T Consensus 176 ~~~~~~D~ViIDTp 189 (297)
T 1j8m_F 176 FLSEKMEIIIVDTA 189 (297)
T ss_dssp HHHTTCSEEEEECC
T ss_pred HHhCCCCEEEEeCC
Confidence 432333 7888875
No 341
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=91.09 E-value=0.07 Score=52.41 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=20.0
Q ss_pred EEEEEEecCcchHHHHHHHHhc
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
++++|+|+.|+|||||++.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4789999999999999998876
No 342
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=91.04 E-value=0.097 Score=50.68 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=20.8
Q ss_pred eEEEEEEecCcchHHHHHHHHhc
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
..+|.|+|+.|+||||+|+.+..
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999876
No 343
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=90.96 E-value=0.095 Score=52.69 Aligned_cols=22 Identities=27% Similarity=0.446 Sum_probs=20.2
Q ss_pred EEEEEEecCcchHHHHHHHHhc
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
.+|+|+|..|.||||+|+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999876
No 344
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=90.96 E-value=0.1 Score=50.84 Aligned_cols=22 Identities=23% Similarity=0.247 Sum_probs=20.2
Q ss_pred EEEEEEecCcchHHHHHHHHhc
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
.+|.|.|+.|+||||+|+.+..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998876
No 345
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=90.93 E-value=0.1 Score=53.73 Aligned_cols=23 Identities=22% Similarity=0.540 Sum_probs=20.9
Q ss_pred eEEEEEEecCcchHHHHHHHHhc
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
..+|.|+|++|+||||+|+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999886
No 346
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=90.87 E-value=0.12 Score=48.40 Aligned_cols=23 Identities=30% Similarity=0.306 Sum_probs=20.9
Q ss_pred eEEEEEEecCcchHHHHHHHHhc
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
-.+++|+|..|.|||||++.+..
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999998876
No 347
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=90.86 E-value=0.11 Score=53.37 Aligned_cols=24 Identities=13% Similarity=0.177 Sum_probs=21.7
Q ss_pred ceEEEEEEecCcchHHHHHHHHhc
Q 001998 206 TVQIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
...+|+|.|+.|.||||+|+.+..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999998876
No 348
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=90.80 E-value=0.095 Score=51.00 Aligned_cols=24 Identities=13% Similarity=0.457 Sum_probs=21.3
Q ss_pred ceEEEEEEecCcchHHHHHHHHhc
Q 001998 206 TVQIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
..++++|+|+.|+|||||++.+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 356899999999999999999875
No 349
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=90.80 E-value=0.11 Score=50.27 Aligned_cols=23 Identities=30% Similarity=0.234 Sum_probs=20.6
Q ss_pred eEEEEEEecCcchHHHHHHHHhc
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
-.+|.|.|+.|+||||+|+.+.+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999876
No 350
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=90.77 E-value=0.13 Score=49.99 Aligned_cols=25 Identities=24% Similarity=0.425 Sum_probs=22.4
Q ss_pred CceEEEEEEecCcchHHHHHHHHhc
Q 001998 205 NTVQIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 205 ~~~~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
....+|+|+|+.|.||||+|+.+..
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999999876
No 351
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=90.74 E-value=0.11 Score=50.74 Aligned_cols=23 Identities=30% Similarity=0.330 Sum_probs=20.8
Q ss_pred eEEEEEEecCcchHHHHHHHHhc
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
..+|.|.|+.|+||||+|+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999876
No 352
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=90.74 E-value=0.2 Score=50.27 Aligned_cols=25 Identities=32% Similarity=0.444 Sum_probs=21.9
Q ss_pred ceEEEEEEecCcchHHHHHHHHhcC
Q 001998 206 TVQIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
...+|.|+|.+|+|||||+..+...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678899999999999999988764
No 353
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=90.73 E-value=0.24 Score=47.98 Aligned_cols=91 Identities=14% Similarity=0.114 Sum_probs=55.4
Q ss_pred hhhhHHhhhccccccee-cCCCC-cccc-----CcccccccCccceEEecCCCcc-----ccchhhccCCcccEEecccc
Q 001998 580 LSPVLKGLFDHLTYGED-DGGEN-TVHD-----IPREIEKLIHLRSLRLAGLKIE-----ELPETCCKLFNLQTLDINEC 647 (984)
Q Consensus 580 ~~~~~~~~~~~l~~Lrv-~l~~~-~i~~-----lp~~i~~L~~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~ 647 (984)
....+...+.+-..|+. +++++ .|.. +-+.+..-.+|+.|+|++|.|. .|...+..-+.|++|+|++|
T Consensus 29 v~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N 108 (197)
T 1pgv_A 29 VESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN 108 (197)
T ss_dssp HHHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS
T ss_pred HHHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC
Confidence 34445555566666776 77764 5542 4455666677888888888775 34455556677788888777
Q ss_pred ccccc-----ccccccCCCCCCeEEeccC
Q 001998 648 YRLKR-----LPQGVGSLVNLRHLVVSLN 671 (984)
Q Consensus 648 ~~l~~-----lP~~i~~L~~L~~L~l~~~ 671 (984)
. +.. +-..+..=+.|++|+++++
T Consensus 109 ~-Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 109 F-LTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp B-CCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred c-CCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 6 432 3333444455777777643
No 354
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=90.71 E-value=0.12 Score=50.28 Aligned_cols=23 Identities=22% Similarity=0.209 Sum_probs=21.0
Q ss_pred eEEEEEEecCcchHHHHHHHHhc
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
..+|+|.|+.|+||||+|+.+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 355
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=90.70 E-value=0.082 Score=51.03 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=19.4
Q ss_pred EEEEEEecCcchHHHHHHHHhc
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
|.|.|+|+.|+|||||++.+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3478999999999999999875
No 356
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=90.67 E-value=0.096 Score=49.87 Aligned_cols=22 Identities=41% Similarity=0.474 Sum_probs=20.2
Q ss_pred EEEEEEecCcchHHHHHHHHhc
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
++++|+|..|.|||||++.+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998876
No 357
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=90.63 E-value=0.085 Score=51.05 Aligned_cols=21 Identities=29% Similarity=0.433 Sum_probs=19.4
Q ss_pred EEEEEecCcchHHHHHHHHhc
Q 001998 209 IFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~ 229 (984)
+|.|+|+.|+||||+|+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999876
No 358
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=90.59 E-value=0.13 Score=54.49 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=21.9
Q ss_pred ceEEEEEEecCcchHHHHHHHHhc
Q 001998 206 TVQIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
...+++|+|..|.|||||++.+..
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHh
Confidence 467999999999999999998876
No 359
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=90.57 E-value=0.12 Score=50.71 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=20.4
Q ss_pred EEEEEEecCcchHHHHHHHHhc
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
.+|+|.|+.|+||||+|+.+..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999886
No 360
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=90.57 E-value=0.11 Score=52.90 Aligned_cols=23 Identities=26% Similarity=0.261 Sum_probs=20.7
Q ss_pred eEEEEEEecCcchHHHHHHHHhc
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
..+++|+|+.|+|||||++.+..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999984
No 361
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=90.51 E-value=0.12 Score=51.12 Aligned_cols=23 Identities=17% Similarity=0.349 Sum_probs=20.8
Q ss_pred eEEEEEEecCcchHHHHHHHHhc
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
-.+++|+|..|.|||||++.+..
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35899999999999999999886
No 362
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=90.50 E-value=0.12 Score=51.22 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.8
Q ss_pred EEEEEEecCcchHHHHHHHHhcC
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
.+|.|.|+.|+||||+|+.+...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 57899999999999999999873
No 363
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=90.42 E-value=0.11 Score=49.17 Aligned_cols=21 Identities=24% Similarity=0.335 Sum_probs=19.4
Q ss_pred EEEEEecCcchHHHHHHHHhc
Q 001998 209 IFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~ 229 (984)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999886
No 364
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=90.41 E-value=3.1 Score=56.48 Aligned_cols=138 Identities=13% Similarity=0.070 Sum_probs=73.1
Q ss_pred EEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCce
Q 001998 209 IFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAIIEELEGSATDLHELNSLLRRIGANIAGQKF 288 (984)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~ 288 (984)
-+.++|++|.|||++|+.+.... ..+ ..+.++.+...+...+.+.+-..+.......... ..-.-.+|+.
T Consensus 1269 ~vLL~GPpGtGKT~la~~~l~~~---~~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~------~~P~~~gk~~ 1338 (2695)
T 4akg_A 1269 GIILCGPPGSGKTMIMNNALRNS---SLY-DVVGINFSKDTTTEHILSALHRHTNYVTTSKGLT------LLPKSDIKNL 1338 (2695)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC---SSC-EEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEE------EEEBSSSSCE
T ss_pred eEEEECCCCCCHHHHHHHHHhcC---CCC-ceEEEEeecCCCHHHHHHHHHHHhhhccccCCcc------ccCCCCCceE
Confidence 47799999999999997776531 222 3456777777777666655554433210000000 0000146888
Q ss_pred EEEEEcCCCCCcCC------hhhHHHhhcCCC-----C-------CcEEEEEccchH------HHhhc-CCCCeEeCCCC
Q 001998 289 FMVLDNLWTDDYRK------WEPFRNCLMNGL-----R-------GSKILLTTRKET------VARMM-ESTDIVYVQGL 343 (984)
Q Consensus 289 LlVlDdvw~~~~~~------~~~l~~~l~~~~-----~-------gs~iiiTtr~~~------v~~~~-~~~~~~~l~~L 343 (984)
++++||+--...+. .+.++..+..++ . +..+|.++.... +...+ .-...+.+...
T Consensus 1339 VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~vi~i~~P 1418 (2695)
T 4akg_A 1339 VLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAILYLGYP 1418 (2695)
T ss_dssp EEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTEEEEECCCC
T ss_pred EEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhheeeEEEeCCC
Confidence 99999974433332 223444433221 1 123444443221 11111 11246778888
Q ss_pred ChHhHHHHHHHHh
Q 001998 344 SEPECWSLFRRFA 356 (984)
Q Consensus 344 ~~~~~~~lf~~~~ 356 (984)
+.++-..+|....
T Consensus 1419 ~~~~l~~I~~~il 1431 (2695)
T 4akg_A 1419 SGKSLSQIYEIYY 1431 (2695)
T ss_dssp TTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 8887777776653
No 365
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=90.40 E-value=0.76 Score=49.11 Aligned_cols=52 Identities=17% Similarity=0.051 Sum_probs=32.4
Q ss_pred HHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcCcccc-cCCCeEEEEEecCC
Q 001998 190 TLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYNDNDVI-NNFEIRVWVCVSDP 248 (984)
Q Consensus 190 ~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~~s~~ 248 (984)
++++.+..-. .-..++|+|..|+|||+|++.+.+..... ..+.+ +++-+.+.
T Consensus 164 raID~l~Pig------rGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~-V~~lIGER 216 (427)
T 3l0o_A 164 RLIDLFAPIG------KGQRGMIVAPPKAGKTTILKEIANGIAENHPDTIR-IILLIDER 216 (427)
T ss_dssp HHHHHHSCCB------TTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSEE-EEEECSCC
T ss_pred hhhhhccccc------CCceEEEecCCCCChhHHHHHHHHHHhhcCCCeEE-EEEEeccC
Confidence 5566665432 22357899999999999999888732111 22333 45665544
No 366
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=90.39 E-value=0.2 Score=50.18 Aligned_cols=33 Identities=27% Similarity=0.311 Sum_probs=24.9
Q ss_pred EEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEE
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWV 243 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 243 (984)
.+++|+|..|.|||||.+.+..- .......+++
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl---~~p~~G~i~~ 63 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLL---DAPTEGKVFL 63 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTS---SCCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcC---CCCCceEEEE
Confidence 47999999999999999999872 2233445544
No 367
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=90.37 E-value=0.19 Score=50.75 Aligned_cols=33 Identities=24% Similarity=0.371 Sum_probs=25.4
Q ss_pred EEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEE
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWV 243 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 243 (984)
.+++|+|..|.|||||.+.+.. ........+++
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~G---l~~p~~G~I~~ 64 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGC---LDKPTEGEVYI 64 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT---SSCCSEEEEEE
T ss_pred CEEEEECCCCCcHHHHHHHHhc---CCCCCceEEEE
Confidence 4799999999999999999987 22334455555
No 368
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=90.36 E-value=0.28 Score=51.86 Aligned_cols=24 Identities=29% Similarity=0.365 Sum_probs=21.8
Q ss_pred ceEEEEEEecCcchHHHHHHHHhc
Q 001998 206 TVQIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
...+++|+|..|.|||||++.+..
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999998886
No 369
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=90.31 E-value=0.18 Score=50.37 Aligned_cols=41 Identities=17% Similarity=0.152 Sum_probs=29.3
Q ss_pred ccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcC
Q 001998 183 GRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 183 Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
+.++..+.+.+.+.. ....++.|+|.+|+|||||+..+...
T Consensus 13 ~~~~~~~~~~~~~~~-------~~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 13 ENKRLAEKNREALRE-------SGTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HHHHHHHHHHHHHHH-------HTCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred hcHHHHHHHHHhhcc-------cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 344455555554432 24678999999999999999988763
No 370
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=90.29 E-value=0.13 Score=49.34 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=20.8
Q ss_pred eEEEEEEecCcchHHHHHHHHhc
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
-.+|+|+|+.|.||||+++.+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999999876
No 371
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=90.26 E-value=0.12 Score=50.76 Aligned_cols=23 Identities=26% Similarity=0.169 Sum_probs=20.6
Q ss_pred eEEEEEEecCcchHHHHHHHHhc
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
..+|.|+|+.|+||||+|+.+..
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34789999999999999999876
No 372
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=90.26 E-value=0.073 Score=57.38 Aligned_cols=110 Identities=14% Similarity=0.151 Sum_probs=58.4
Q ss_pred EEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCH--HHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCC
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDE--FSVAKAIIEELEGSATDLHELNSLLRRIGANIAG 285 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 285 (984)
.+++|+|..|.|||||.+.+.+- +.......++ .+.++... ... ..++.+... .... ......+...|..
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~--~~~~~~~~i~-t~ed~~e~~~~~~-~~~v~q~~~-~~~~---~~~~~~La~aL~~ 195 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDY--LNNTKYHHIL-TIEDPIEFVHESK-KCLVNQREV-HRDT---LGFSEALRSALRE 195 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH--HHHHCCCEEE-EEESSCCSCCCCS-SSEEEEEEB-TTTB---SCHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhc--ccCCCCcEEE-EccCcHHhhhhcc-ccceeeeee-cccc---CCHHHHHHHHhhh
Confidence 48999999999999999988762 2111112221 22221110 000 000000000 0011 1234467788888
Q ss_pred CceEEEEEcCCCCCcCChhhHHHhhcCCCCCcEEEEEccchHHHh
Q 001998 286 QKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILLTTRKETVAR 330 (984)
Q Consensus 286 kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~v~~ 330 (984)
.+=+|++|.+-+ .+.+..+.... ..|.-||+||...+.+.
T Consensus 196 ~PdvillDEp~d--~e~~~~~~~~~---~~G~~vl~t~H~~~~~~ 235 (356)
T 3jvv_A 196 DPDIILVGEMRD--LETIRLALTAA---ETGHLVFGTLHTTSAAK 235 (356)
T ss_dssp CCSEEEESCCCS--HHHHHHHHHHH---HTTCEEEEEESCSSHHH
T ss_pred CcCEEecCCCCC--HHHHHHHHHHH---hcCCEEEEEEccChHHH
Confidence 899999999953 33444433332 23556888888765543
No 373
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=90.24 E-value=0.1 Score=49.82 Aligned_cols=21 Identities=33% Similarity=0.347 Sum_probs=19.5
Q ss_pred EEEEEecCcchHHHHHHHHhc
Q 001998 209 IFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~ 229 (984)
+|.|.|+.|+||||+|+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999886
No 374
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=90.23 E-value=0.59 Score=48.89 Aligned_cols=24 Identities=33% Similarity=0.364 Sum_probs=21.2
Q ss_pred eEEEEEEecCcchHHHHHHHHhcC
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
.++++|+|.+|+||||++..++.-
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~ 121 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALY 121 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998863
No 375
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=90.19 E-value=0.1 Score=51.81 Aligned_cols=21 Identities=29% Similarity=0.520 Sum_probs=19.5
Q ss_pred EEEEEecCcchHHHHHHHHhc
Q 001998 209 IFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~ 229 (984)
+|+|.|..|+||||+|+.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999999876
No 376
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=90.09 E-value=0.095 Score=50.57 Aligned_cols=23 Identities=30% Similarity=0.291 Sum_probs=16.6
Q ss_pred eEEEEEEecCcchHHHHHHHHhc
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
..+|.|.|+.|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999876
No 377
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=90.09 E-value=0.13 Score=50.18 Aligned_cols=21 Identities=38% Similarity=0.653 Sum_probs=19.6
Q ss_pred EEEEEecCcchHHHHHHHHhc
Q 001998 209 IFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~ 229 (984)
+|+|.|..|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 378
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=90.07 E-value=0.19 Score=50.82 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=20.8
Q ss_pred EEEEEEecCcchHHHHHHHHhc
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
.+++|+|..|.|||||.+.+..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 6899999999999999999987
No 379
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=90.04 E-value=0.2 Score=51.72 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=20.3
Q ss_pred EEEEEEecCcchHHHHHHHHhc
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
.+++|+|..|.|||||++.+..
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 4799999999999999999986
No 380
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=90.00 E-value=0.15 Score=51.91 Aligned_cols=24 Identities=17% Similarity=0.231 Sum_probs=21.3
Q ss_pred ceEEEEEEecCcchHHHHHHHHhc
Q 001998 206 TVQIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
...+++|+|..|.|||||++.+..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998876
No 381
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=90.00 E-value=0.15 Score=50.52 Aligned_cols=26 Identities=19% Similarity=0.271 Sum_probs=23.1
Q ss_pred CceEEEEEEecCcchHHHHHHHHhcC
Q 001998 205 NTVQIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 205 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
...+||.|.|++|+||||.|+.+...
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999998863
No 382
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=89.99 E-value=0.14 Score=52.50 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=20.8
Q ss_pred eEEEEEEecCcchHHHHHHHHhc
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
..+|+|+|+.|.||||+++.+..
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999985
No 383
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=89.90 E-value=0.23 Score=50.45 Aligned_cols=24 Identities=21% Similarity=0.185 Sum_probs=21.3
Q ss_pred ceEEEEEEecCcchHHHHHHHHhc
Q 001998 206 TVQIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
...+|.|.|+.|+||||+|+.+.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999875
No 384
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=89.85 E-value=0.5 Score=46.12 Aligned_cols=48 Identities=17% Similarity=0.130 Sum_probs=28.9
Q ss_pred EEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHHH
Q 001998 210 FSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAII 259 (984)
Q Consensus 210 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 259 (984)
|+|=|..|+||||.++.+++. .+..-..+++..-.......+..+.++
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~--L~~~g~~v~~treP~~t~~~~~ir~~l 50 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQY--LEKRGKKVILKREPGGTETGEKIRKIL 50 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH--HHHCCCcEEEEECCCCCcHHHHHHHHh
Confidence 677899999999999999873 433333344443332223334444443
No 385
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=89.84 E-value=0.13 Score=54.04 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=21.0
Q ss_pred eEEEEEEecCcchHHHHHHHHhc
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
..+++|+|.+|+||||+++.+..
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 46899999999999999999886
No 386
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=89.81 E-value=0.12 Score=51.50 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=20.2
Q ss_pred EEEEEEecCcchHHHHHHHHhc
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
.+++|+|..|+|||||++.+..
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4799999999999999999876
No 387
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=89.80 E-value=0.32 Score=47.42 Aligned_cols=21 Identities=33% Similarity=0.518 Sum_probs=19.5
Q ss_pred EEEEEecCcchHHHHHHHHhc
Q 001998 209 IFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~ 229 (984)
.|+|.|..|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999887
No 388
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=89.78 E-value=0.22 Score=51.18 Aligned_cols=33 Identities=24% Similarity=0.265 Sum_probs=25.0
Q ss_pred EEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEE
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWV 243 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 243 (984)
.+++|+|..|.|||||.+.+..- .......+++
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl---~~p~~G~i~~ 65 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFL---EKPSEGAIIV 65 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS---SCCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcC---CCCCCcEEEE
Confidence 48999999999999999999873 2233445554
No 389
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=89.74 E-value=0.18 Score=52.58 Aligned_cols=24 Identities=29% Similarity=0.551 Sum_probs=21.5
Q ss_pred ceEEEEEEecCcchHHHHHHHHhc
Q 001998 206 TVQIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999873
No 390
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=89.62 E-value=0.15 Score=50.44 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=20.9
Q ss_pred eEEEEEEecCcchHHHHHHHHhc
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
..+|+|.|..|+||||+|+.+..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 35899999999999999999987
No 391
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=89.59 E-value=0.46 Score=50.62 Aligned_cols=105 Identities=13% Similarity=0.032 Sum_probs=53.2
Q ss_pred EEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCc
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAIIEELEGSATDLHELNSLLRRIGANIAGQK 287 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 287 (984)
.+++|+|..|.|||||++.+..- + ..-...+.+.-........ .+ +.+..-.. .-......+...|..++
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~--~-~~~~g~i~i~~~~e~~~~~-~~---~~i~~~~g---gg~~~r~~la~aL~~~p 241 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEF--I-PKEERIISIEDTEEIVFKH-HK---NYTQLFFG---GNITSADCLKSCLRMRP 241 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGG--S-CTTSCEEEEESSCCCCCSS-CS---SEEEEECB---TTBCHHHHHHHHTTSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC--C-cCCCcEEEECCeecccccc-ch---hEEEEEeC---CChhHHHHHHHHhhhCC
Confidence 37899999999999999999873 1 1223444443221111000 00 00000000 01122334556677788
Q ss_pred eEEEEEcCCCCCcCChhhHHHhhcCCCCCcEEEEEccchH
Q 001998 288 FFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILLTTRKET 327 (984)
Q Consensus 288 ~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~ 327 (984)
=+|++|++-. .+.++.+. .+..+ +.-+|+||....
T Consensus 242 ~ilildE~~~--~e~~~~l~-~~~~g--~~tvi~t~H~~~ 276 (330)
T 2pt7_A 242 DRIILGELRS--SEAYDFYN-VLCSG--HKGTLTTLHAGS 276 (330)
T ss_dssp SEEEECCCCS--THHHHHHH-HHHTT--CCCEEEEEECSS
T ss_pred CEEEEcCCCh--HHHHHHHH-HHhcC--CCEEEEEEcccH
Confidence 8999999854 23343332 33332 222666666543
No 392
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=89.57 E-value=0.16 Score=50.64 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=20.8
Q ss_pred eEEEEEEecCcchHHHHHHHHhc
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
-.+++|+|+.|+|||||.+.+..
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999876
No 393
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=89.53 E-value=0.2 Score=51.52 Aligned_cols=26 Identities=35% Similarity=0.313 Sum_probs=22.4
Q ss_pred CCceEEEEEEecCcchHHHHHHHHhc
Q 001998 204 TNTVQIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 204 ~~~~~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
.....++.++|.||+||||++..+..
T Consensus 11 ~~~~~i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 11 GMASMIVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp TCCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcceEEEEEeCCCCCCHHHHHHHHHH
Confidence 34578899999999999999998874
No 394
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=89.52 E-value=0.13 Score=49.83 Aligned_cols=22 Identities=36% Similarity=0.392 Sum_probs=19.7
Q ss_pred EEEEEecCcchHHHHHHHHhcC
Q 001998 209 IFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
+++|+|..|+|||||++.+...
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5899999999999999988764
No 395
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=89.41 E-value=0.16 Score=51.00 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=20.6
Q ss_pred eEEEEEEecCcchHHHHHHHHhc
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
...|.|.|+.|+||||+|+.+..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999886
No 396
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=89.40 E-value=0.16 Score=50.36 Aligned_cols=23 Identities=17% Similarity=0.263 Sum_probs=20.9
Q ss_pred eEEEEEEecCcchHHHHHHHHhc
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
..+|+|.|+.|+||||+|+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999987
No 397
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=89.37 E-value=0.46 Score=52.95 Aligned_cols=24 Identities=33% Similarity=0.428 Sum_probs=21.9
Q ss_pred ceEEEEEEecCcchHHHHHHHHhc
Q 001998 206 TVQIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
...+++|+|..|+|||||++.+..
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHH
Confidence 457999999999999999999886
No 398
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=89.36 E-value=0.61 Score=52.33 Aligned_cols=51 Identities=10% Similarity=0.074 Sum_probs=34.3
Q ss_pred eEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHHHH
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAIIE 260 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 260 (984)
-.++.|.|.+|+||||||..++...... .-..++|++.. .+...+...++.
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~-~g~~Vl~~s~E--~s~~~l~~r~~~ 253 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATK-TNENVAIFSLE--MSAQQLVMRMLC 253 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHH-SSCCEEEEESS--SCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEEECC--CCHHHHHHHHHH
Confidence 3588999999999999999888642221 22357777644 345666666543
No 399
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=89.34 E-value=0.18 Score=52.98 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=21.8
Q ss_pred ceEEEEEEecCcchHHHHHHHHhc
Q 001998 206 TVQIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
...+++|+|..|+||||+++.++.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 457999999999999999999887
No 400
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=89.32 E-value=0.18 Score=49.99 Aligned_cols=24 Identities=25% Similarity=0.246 Sum_probs=21.3
Q ss_pred eEEEEEEecCcchHHHHHHHHhcC
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
..+|.|.|+.|.||||+|+.+...
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998863
No 401
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=89.31 E-value=0.25 Score=50.67 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=20.5
Q ss_pred EEEEEEecCcchHHHHHHHHhc
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
.+++|+|..|.|||||.+.+..
T Consensus 51 ei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEEcCCCCcHHHHHHHHHc
Confidence 4899999999999999999987
No 402
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=89.31 E-value=0.25 Score=50.81 Aligned_cols=33 Identities=21% Similarity=0.358 Sum_probs=25.1
Q ss_pred EEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEE
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWV 243 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 243 (984)
.+++|+|..|.|||||++.+..- .......+++
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl---~~p~~G~I~~ 70 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGY---LSPSHGECHL 70 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSS---SCCSSCEEEE
T ss_pred CEEEEECCCCCcHHHHHHHHhcC---CCCCCcEEEE
Confidence 47999999999999999999872 2233445555
No 403
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=89.23 E-value=0.23 Score=49.25 Aligned_cols=22 Identities=36% Similarity=0.534 Sum_probs=20.2
Q ss_pred EEEEEEecCcchHHHHHHHHhc
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
.+++|+|..|.|||||.+.++.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3789999999999999999987
No 404
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.21 E-value=0.26 Score=49.89 Aligned_cols=22 Identities=36% Similarity=0.531 Sum_probs=20.5
Q ss_pred EEEEEEecCcchHHHHHHHHhc
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
.+++|+|..|.|||||.+.++.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999987
No 405
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=89.16 E-value=0.26 Score=50.07 Aligned_cols=22 Identities=36% Similarity=0.665 Sum_probs=20.5
Q ss_pred EEEEEEecCcchHHHHHHHHhc
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
.+++|+|..|.|||||++.+..
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999999987
No 406
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=89.13 E-value=0.4 Score=53.94 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=19.9
Q ss_pred EEEEEecCcchHHHHHHHHhcC
Q 001998 209 IFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
.+.|.|.+|.||||++..+...
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~ 68 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEA 68 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 7899999999999999888763
No 407
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.11 E-value=0.27 Score=50.28 Aligned_cols=22 Identities=36% Similarity=0.664 Sum_probs=20.5
Q ss_pred EEEEEEecCcchHHHHHHHHhc
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
.+++|+|..|.|||||.+.++.
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999987
No 408
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=89.04 E-value=0.4 Score=51.50 Aligned_cols=25 Identities=28% Similarity=0.312 Sum_probs=22.3
Q ss_pred ceEEEEEEecCcchHHHHHHHHhcC
Q 001998 206 TVQIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
...+++|+|..|+||||+++.++.-
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhh
Confidence 4579999999999999999998873
No 409
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=89.04 E-value=0.36 Score=52.24 Aligned_cols=37 Identities=22% Similarity=0.264 Sum_probs=27.0
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhc
Q 001998 188 MRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 188 ~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
...+.+.+.... ....+|+|+|.+|+|||||+..+..
T Consensus 65 ~~~~~~~~~~~~-----~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 65 AQQLLLRLLPDS-----GNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp HHHHHHHHGGGC-----CCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHhHhhc-----CCceEEEEECCCCCCHHHHHHHHHH
Confidence 444555554322 2567999999999999999988865
No 410
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=89.02 E-value=0.27 Score=50.37 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=20.5
Q ss_pred EEEEEEecCcchHHHHHHHHhc
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
.+++|+|..|.|||||.+.+..
T Consensus 34 e~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999987
No 411
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=89.00 E-value=0.17 Score=50.52 Aligned_cols=22 Identities=27% Similarity=0.265 Sum_probs=20.1
Q ss_pred EEEEEEecCcchHHHHHHHHhc
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
..|.|.|+.|+||||+|+.+..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999886
No 412
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=88.95 E-value=1.4 Score=51.26 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=20.6
Q ss_pred eEEEEEEecCcchHHHHHHHHhc
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
-.+++|+|..|.|||||++.+..
T Consensus 369 G~~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 369 GKTVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999876
No 413
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=88.89 E-value=0.18 Score=50.22 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=18.9
Q ss_pred EEEEEecCcchHHHHHHHHhc
Q 001998 209 IFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~ 229 (984)
.|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999876
No 414
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=88.88 E-value=0.28 Score=50.67 Aligned_cols=22 Identities=41% Similarity=0.634 Sum_probs=20.5
Q ss_pred EEEEEEecCcchHHHHHHHHhc
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
.+++|+|..|.|||||++.++.
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999986
No 415
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=88.87 E-value=0.22 Score=54.96 Aligned_cols=51 Identities=22% Similarity=0.294 Sum_probs=35.8
Q ss_pred CcccccHHHHHHHHHHHhcC------CCCCC-CCceEEEEEEecCcchHHHHHHHHhc
Q 001998 179 SEVRGRDEEMRTLKSMLLCQ------GSDQQ-TNTVQIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~------~~~~~-~~~~~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
..++|.+..++.+...+... ..... ....+-+.++|++|+||||+|+.++.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~ 72 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 46889999888887766321 00000 11234588999999999999999987
No 416
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=88.82 E-value=0.18 Score=49.54 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=20.8
Q ss_pred EEEEEEecCcchHHHHHHHHhcC
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
.+|+|.|+.|+||||+++.+...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 47899999999999999999873
No 417
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=88.76 E-value=0.15 Score=51.86 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=20.2
Q ss_pred EEEEEEecCcchHHHHHHHHhc
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
.+|+|+|+.|.||||+++.+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999986
No 418
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=88.67 E-value=0.2 Score=49.94 Aligned_cols=23 Identities=30% Similarity=0.333 Sum_probs=20.6
Q ss_pred eEEEEEEecCcchHHHHHHHHhc
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
..+|+|.|+.|.||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999864
No 419
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=88.67 E-value=1.2 Score=49.60 Aligned_cols=53 Identities=8% Similarity=-0.029 Sum_probs=36.0
Q ss_pred eEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHHHHHh
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAIIEEL 262 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l 262 (984)
-.++.|.|.+|+||||+|..++..... .+=..++|++.. -+..++...++...
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~-~~g~~vl~~slE--~~~~~l~~R~~~~~ 252 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAAL-KEGVGVGIYSLE--MPAAQLTLRMMCSE 252 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHH-TTCCCEEEEESS--SCHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH-hCCCeEEEEECC--CCHHHHHHHHHHHH
Confidence 357889999999999999888764221 112357776554 45667777766543
No 420
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=88.61 E-value=0.3 Score=50.32 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=20.4
Q ss_pred EEEEEEecCcchHHHHHHHHhc
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
.+++|+|..|.|||||.+.++.
T Consensus 34 e~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4899999999999999999986
No 421
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=88.58 E-value=0.19 Score=49.98 Aligned_cols=21 Identities=24% Similarity=0.395 Sum_probs=18.9
Q ss_pred EEEEEecCcchHHHHHHHHhc
Q 001998 209 IFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~ 229 (984)
.|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999875
No 422
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=88.55 E-value=0.2 Score=51.09 Aligned_cols=23 Identities=30% Similarity=0.261 Sum_probs=20.3
Q ss_pred eEEEEEEecCcchHHHHHHHHhc
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
-.+++|+|..|+|||||++.+..
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH
Confidence 35899999999999999998873
No 423
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=88.50 E-value=0.18 Score=48.09 Aligned_cols=23 Identities=26% Similarity=0.445 Sum_probs=21.1
Q ss_pred eEEEEEEecCcchHHHHHHHHhc
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
.++++|+|..|+|||||+..+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHH
Confidence 56899999999999999999886
No 424
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=88.43 E-value=0.21 Score=52.96 Aligned_cols=22 Identities=27% Similarity=0.292 Sum_probs=20.5
Q ss_pred EEEEEEecCcchHHHHHHHHhc
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
.+|+|.|+.|+||||||+.++.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5899999999999999999886
No 425
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=88.32 E-value=0.29 Score=47.49 Aligned_cols=23 Identities=13% Similarity=0.135 Sum_probs=20.1
Q ss_pred EEEEEEecCcchHHHHHHHHhcC
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
..+.|+|++|.||||+|..+++.
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999888873
No 426
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=88.30 E-value=0.33 Score=55.67 Aligned_cols=24 Identities=29% Similarity=0.322 Sum_probs=21.1
Q ss_pred eEEEEEEecCcchHHHHHHHHhcC
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
-.++.|+|..|+|||||++.++..
T Consensus 281 G~i~~i~G~~GsGKSTLl~~l~g~ 304 (525)
T 1tf7_A 281 DSIILATGATGTGKTLLVSRFVEN 304 (525)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHH
Confidence 358999999999999999998863
No 427
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=88.30 E-value=0.16 Score=51.31 Aligned_cols=22 Identities=32% Similarity=0.401 Sum_probs=15.8
Q ss_pred EEEEEEecCcchHHHHHHHHh-c
Q 001998 208 QIFSMVGMGGIGKTTLAQLAY-N 229 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~-~ 229 (984)
.+++|+|..|+|||||++.+. .
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC-
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 589999999999999999998 5
No 428
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=88.29 E-value=0.28 Score=47.62 Aligned_cols=25 Identities=20% Similarity=0.332 Sum_probs=21.7
Q ss_pred ceEEEEEEecCcchHHHHHHHHhcC
Q 001998 206 TVQIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
..-.++|+|..|+|||||.+.+...
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcC
Confidence 3567899999999999999998864
No 429
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=88.26 E-value=0.21 Score=49.28 Aligned_cols=21 Identities=24% Similarity=0.357 Sum_probs=19.8
Q ss_pred EEEEEecCcchHHHHHHHHhc
Q 001998 209 IFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~ 229 (984)
+|+|.|..|+||||+|+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999876
No 430
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=88.20 E-value=0.21 Score=50.02 Aligned_cols=22 Identities=23% Similarity=0.197 Sum_probs=20.1
Q ss_pred EEEEEEecCcchHHHHHHHHhc
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
..|.|.|+.|+||||+|+.+..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999986
No 431
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=88.19 E-value=0.33 Score=50.32 Aligned_cols=33 Identities=24% Similarity=0.247 Sum_probs=25.0
Q ss_pred EEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEE
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWV 243 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 243 (984)
.+++|+|..|.|||||.+.++.- .......+++
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl---~~p~~G~I~~ 80 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAY---EPATSGTVNL 80 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS---SCCSEEEEEE
T ss_pred CEEEEECCCCCcHHHHHHHHhCC---CCCCCeEEEE
Confidence 47999999999999999999873 2233455554
No 432
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=88.08 E-value=0.2 Score=49.98 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=19.9
Q ss_pred EEEEEEecCcchHHHHHHHHhc
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
..|.|.|+.|+||||+|+.+..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999876
No 433
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=88.06 E-value=0.29 Score=46.10 Aligned_cols=23 Identities=17% Similarity=0.345 Sum_probs=20.5
Q ss_pred EEEEEEecCcchHHHHHHHHhcC
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
..|+|+|.+|+|||||...+.+.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999998864
No 434
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=87.92 E-value=0.41 Score=50.56 Aligned_cols=41 Identities=20% Similarity=0.216 Sum_probs=27.9
Q ss_pred CceEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecC
Q 001998 205 NTVQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSD 247 (984)
Q Consensus 205 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~ 247 (984)
...++|+|+|-||+||||+|..+..- ....=..++-|....
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~--La~~G~~VlliD~D~ 79 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAA--FSILGKRVLQIGCDP 79 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEESS
T ss_pred CCceEEEEECCCCccHHHHHHHHHHH--HHHCCCeEEEEeCCC
Confidence 45788999999999999999877652 222222455666543
No 435
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=87.92 E-value=0.22 Score=48.00 Aligned_cols=22 Identities=41% Similarity=0.465 Sum_probs=19.6
Q ss_pred EEEEEecCcchHHHHHHHHhcC
Q 001998 209 IFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
-|+|+|.+|+|||||++.+.+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998873
No 436
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=87.87 E-value=0.45 Score=52.16 Aligned_cols=85 Identities=8% Similarity=0.161 Sum_probs=50.3
Q ss_pred EEEEEecCcchHHHHHHHHhcCcccccCCC----eEEEEEecCCC-CHHHHHHHHHHH--hcC-----CCCCcccHH---
Q 001998 209 IFSMVGMGGIGKTTLAQLAYNDNDVINNFE----IRVWVCVSDPF-DEFSVAKAIIEE--LEG-----SATDLHELN--- 273 (984)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~----~~~wv~~s~~~-~~~~~~~~i~~~--l~~-----~~~~~~~~~--- 273 (984)
.++|.|..|+|||+|+.++.+.... +-+ .++++-+.+.. .+.++.+++.+. +.. ...+.....
T Consensus 153 r~~Ifgg~G~GKt~L~~~Ia~~~~~--~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~~ 230 (465)
T 3vr4_D 153 KLPVFSGSGLPHKELAAQIARQATV--LDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIA 230 (465)
T ss_dssp BCCEEECTTSCHHHHHHHHHHHCBC--SSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHHH
T ss_pred EEEEeCCCCcChHHHHHHHHHHHHh--ccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHHH
Confidence 3678999999999999999885332 223 56677777554 455566665443 110 011111111
Q ss_pred --HHHHHHHHHh---CCCceEEEEEcC
Q 001998 274 --SLLRRIGANI---AGQKFFMVLDNL 295 (984)
Q Consensus 274 --~~~~~l~~~l---~~kr~LlVlDdv 295 (984)
...-.+.+++ +++.+||++||+
T Consensus 231 a~~~a~tiAEyfrd~~G~~VLl~~Dsl 257 (465)
T 3vr4_D 231 TPRMALTAAEYLAYEKGMHVLVIMTDM 257 (465)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 1122333444 379999999998
No 437
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=87.84 E-value=0.18 Score=49.77 Aligned_cols=22 Identities=36% Similarity=0.301 Sum_probs=19.9
Q ss_pred EEEEEecCcchHHHHHHHHhcC
Q 001998 209 IFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
+++|+|..|.|||||++.+..-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7899999999999999988763
No 438
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=87.80 E-value=0.23 Score=49.69 Aligned_cols=23 Identities=17% Similarity=0.303 Sum_probs=20.7
Q ss_pred eEEEEEEecCcchHHHHHHHHhc
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
..+|+|.|+.|.||||+|+.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999886
No 439
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=87.77 E-value=0.7 Score=51.30 Aligned_cols=83 Identities=19% Similarity=0.238 Sum_probs=48.6
Q ss_pred EEEEEecCcchHHHHH-HHHhcCcccccCCCe-EEEEEecCCCC-HHHHHHHHHHHhc--------CCCCCcccHHH---
Q 001998 209 IFSMVGMGGIGKTTLA-QLAYNDNDVINNFEI-RVWVCVSDPFD-EFSVAKAIIEELE--------GSATDLHELNS--- 274 (984)
Q Consensus 209 vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~-~~wv~~s~~~~-~~~~~~~i~~~l~--------~~~~~~~~~~~--- 274 (984)
.++|+|..|+|||+|| ..+.+.. .-+. .+++-+.+... +.++.+.+.+.=. .+..+......
T Consensus 177 R~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~~a~ 252 (515)
T 2r9v_A 177 RELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQYIAP 252 (515)
T ss_dssp BEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHHHH
T ss_pred EEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHHHHH
Confidence 5789999999999996 5777742 3453 46777776653 4555555554210 11111111111
Q ss_pred -HHHHHHHHh--CCCceEEEEEcC
Q 001998 275 -LLRRIGANI--AGQKFFMVLDNL 295 (984)
Q Consensus 275 -~~~~l~~~l--~~kr~LlVlDdv 295 (984)
..-.+.+++ +++..||++||+
T Consensus 253 ~~a~tiAEyfrd~G~dVLli~Dsl 276 (515)
T 2r9v_A 253 YAGCAMGEYFAYSGRDALVVYDDL 276 (515)
T ss_dssp HHHHHHHHHHHTTTCEEEEEEETH
T ss_pred HHHHHHHHHHHHcCCcEEEEeccH
Confidence 111222333 589999999998
No 440
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=87.74 E-value=0.34 Score=53.05 Aligned_cols=87 Identities=8% Similarity=0.110 Sum_probs=49.7
Q ss_pred EEEEEecCcchHHHHHHHHhcCcccc--------cCCC-eEEEEEecCCC-CHHHHHHHHHHH--hcC-----CCCCccc
Q 001998 209 IFSMVGMGGIGKTTLAQLAYNDNDVI--------NNFE-IRVWVCVSDPF-DEFSVAKAIIEE--LEG-----SATDLHE 271 (984)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~~~~~~--------~~F~-~~~wv~~s~~~-~~~~~~~~i~~~--l~~-----~~~~~~~ 271 (984)
.++|.|..|+|||+|+.++.+..... .+=+ ..+++-+.+.. .+.++.+++.+. +.. ...+...
T Consensus 149 r~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~p~ 228 (464)
T 3gqb_B 149 KLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADDPT 228 (464)
T ss_dssp BCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTSCT
T ss_pred EEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCCCH
Confidence 46788999999999999998754331 1112 56677777554 445555554432 110 0111111
Q ss_pred HH-----HHHHHHHHHh---CCCceEEEEEcC
Q 001998 272 LN-----SLLRRIGANI---AGQKFFMVLDNL 295 (984)
Q Consensus 272 ~~-----~~~~~l~~~l---~~kr~LlVlDdv 295 (984)
.. ...-.+.+++ +++.+||++||+
T Consensus 229 ~~r~~~~~~a~tiAEyfrd~~G~~VLl~~Ddl 260 (464)
T 3gqb_B 229 IERILTPRMALTVAEYLAFEHDYHVLVILTDM 260 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCEEEEEEETH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 11 1122333444 379999999998
No 441
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=87.68 E-value=0.27 Score=51.91 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=21.6
Q ss_pred eEEEEEEecCcchHHHHHHHHhcC
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
.++|.|+|+.|+||||||..++..
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999873
No 442
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=87.63 E-value=0.26 Score=50.31 Aligned_cols=22 Identities=27% Similarity=0.610 Sum_probs=20.6
Q ss_pred EEEEEEecCcchHHHHHHHHhc
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
.+++|+|..|.|||||.+.+..
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999987
No 443
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=87.56 E-value=0.26 Score=48.97 Aligned_cols=21 Identities=29% Similarity=0.290 Sum_probs=19.1
Q ss_pred EEEEEecCcchHHHHHHHHhc
Q 001998 209 IFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~ 229 (984)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999876
No 444
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=87.53 E-value=0.4 Score=46.41 Aligned_cols=25 Identities=28% Similarity=0.280 Sum_probs=21.4
Q ss_pred ceEEEEEEecCcchHHHHHHHHhcC
Q 001998 206 TVQIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
....|.|+|.+|+|||||...+.+.
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3457889999999999999998874
No 445
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=87.41 E-value=0.26 Score=51.84 Aligned_cols=22 Identities=27% Similarity=0.300 Sum_probs=20.5
Q ss_pred EEEEEEecCcchHHHHHHHHhc
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
++|.|+|+.|+||||||+.+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999886
No 446
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=87.39 E-value=0.27 Score=50.68 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=20.6
Q ss_pred EEEEEEecCcchHHHHHHHHhc
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
.+++|+|..|.|||||++.++.
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4799999999999999999987
No 447
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=87.36 E-value=0.25 Score=49.44 Aligned_cols=21 Identities=29% Similarity=0.368 Sum_probs=19.2
Q ss_pred EEEEEecCcchHHHHHHHHhc
Q 001998 209 IFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~ 229 (984)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999876
No 448
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=87.34 E-value=0.41 Score=56.01 Aligned_cols=43 Identities=21% Similarity=0.319 Sum_probs=35.9
Q ss_pred CcccccHHHHHHHHHHHhcCCCCCCCCceEEEEEEecCcchHHHHHHHHhcC
Q 001998 179 SEVRGRDEEMRTLKSMLLCQGSDQQTNTVQIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
..++|.+..++.+...+... ..+.|+|..|+||||||+.+.+-
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g---------~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK---------RHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT---------CCEEEECCTTSSHHHHHHHHHHT
T ss_pred ceEECchhhHhhccccccCC---------CEEEEEeCCCCCHHHHHHHHhcc
Confidence 46899999998888777532 36899999999999999999873
No 449
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=87.20 E-value=0.8 Score=59.82 Aligned_cols=81 Identities=19% Similarity=0.181 Sum_probs=0.0
Q ss_pred EEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCc-----ccHHHHHHHHHHH
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAIIEELEGSATDL-----HELNSLLRRIGAN 282 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~-----~~~~~~~~~l~~~ 282 (984)
+++.|+|++|+|||+||.++.. ....+=..++|+.+...++... ++.++.+-... ...++....+++.
T Consensus 1428 ~~vll~GppGtGKT~LA~ala~--ea~~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~~l 1500 (2050)
T 3cmu_A 1428 RIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDAL 1500 (2050)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH--HHHTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHHHH
Q ss_pred hC-CCceEEEEEcC
Q 001998 283 IA-GQKFFMVLDNL 295 (984)
Q Consensus 283 l~-~kr~LlVlDdv 295 (984)
.+ .+.-+||+|.+
T Consensus 1501 vr~~~~~lVVIDsi 1514 (2050)
T 3cmu_A 1501 ARSGAVDVIVVDSV 1514 (2050)
T ss_dssp HHHTCCSEEEESCG
T ss_pred HhcCCCCEEEEcCh
No 450
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=87.18 E-value=0.4 Score=50.32 Aligned_cols=22 Identities=36% Similarity=0.711 Sum_probs=20.4
Q ss_pred EEEEEEecCcchHHHHHHHHhc
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
.+++|+|..|.|||||++.+..
T Consensus 81 e~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTT
T ss_pred CEEEEECCCCchHHHHHHHHHc
Confidence 4899999999999999999876
No 451
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=87.18 E-value=0.28 Score=49.90 Aligned_cols=22 Identities=36% Similarity=0.543 Sum_probs=20.5
Q ss_pred EEEEEEecCcchHHHHHHHHhc
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
.+++|+|..|.|||||.+.+..
T Consensus 27 e~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 3799999999999999999987
No 452
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=87.10 E-value=0.28 Score=50.31 Aligned_cols=23 Identities=39% Similarity=0.606 Sum_probs=20.9
Q ss_pred EEEEEEecCcchHHHHHHHHhcC
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
.+++|+|..|.|||||.+.+..-
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 48999999999999999999873
No 453
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=87.08 E-value=0.31 Score=45.47 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=20.2
Q ss_pred EEEEEEecCcchHHHHHHHHhcC
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
.-|.|+|.+|+|||||+..+.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45889999999999999998764
No 454
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=87.00 E-value=0.29 Score=49.95 Aligned_cols=23 Identities=35% Similarity=0.577 Sum_probs=20.8
Q ss_pred EEEEEEecCcchHHHHHHHHhcC
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
.+++|+|..|.|||||.+.++.-
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 37999999999999999999873
No 455
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=86.88 E-value=0.3 Score=50.90 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=20.8
Q ss_pred eEEEEEEecCcchHHHHHHHHhc
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
.++|.|+|+.|+||||||..++.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 35889999999999999999986
No 456
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=86.86 E-value=0.29 Score=49.24 Aligned_cols=24 Identities=25% Similarity=0.093 Sum_probs=21.8
Q ss_pred ceEEEEEEecCcchHHHHHHHHhc
Q 001998 206 TVQIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
.-.+|+|.|..|.||||+++.+..
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 457999999999999999999887
No 457
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=86.65 E-value=0.3 Score=51.47 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=20.3
Q ss_pred EEEEEEecCcchHHHHHHHHhc
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999886
No 458
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=86.63 E-value=0.96 Score=50.16 Aligned_cols=81 Identities=20% Similarity=0.228 Sum_probs=48.2
Q ss_pred EEEEEecCcchHHHHH-HHHhcCcccccCCCe-EEEEEecCCCC-HHHHHHHHHHHhcC--------CCCCcccHH----
Q 001998 209 IFSMVGMGGIGKTTLA-QLAYNDNDVINNFEI-RVWVCVSDPFD-EFSVAKAIIEELEG--------SATDLHELN---- 273 (984)
Q Consensus 209 vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~-~~wv~~s~~~~-~~~~~~~i~~~l~~--------~~~~~~~~~---- 273 (984)
.++|+|..|+|||+|| ..+.+.. +-+. .+++-+.+... +.++.+.+.+.=.. +..+.....
T Consensus 164 R~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~~a~ 239 (502)
T 2qe7_A 164 RELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLYLAP 239 (502)
T ss_dssp BCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHHHHH
T ss_pred EEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHHHHH
Confidence 4789999999999996 5777742 3453 46777776653 44555555442111 111111111
Q ss_pred ----HHHHHHHHHhCCCceEEEEEcC
Q 001998 274 ----SLLRRIGANIAGQKFFMVLDNL 295 (984)
Q Consensus 274 ----~~~~~l~~~l~~kr~LlVlDdv 295 (984)
.+.+.++. +++.+||++||+
T Consensus 240 ~~a~tiAEyfrd--~G~dVLl~~Dsl 263 (502)
T 2qe7_A 240 YAGCAMGEYFMY--KGKHALVVYDDL 263 (502)
T ss_dssp HHHHHHHHHHHT--TTCEEEEEEECH
T ss_pred HHHHHHHHHHHH--cCCcEEEEEecH
Confidence 12233333 589999999998
No 459
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=86.59 E-value=0.35 Score=50.00 Aligned_cols=37 Identities=24% Similarity=0.239 Sum_probs=25.4
Q ss_pred EEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEec
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVS 246 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s 246 (984)
++|+|.|-||+||||+|..+..- ....=..++-|...
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~--la~~G~~VlliD~D 38 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSG--LHAMGKTIMVVGCD 38 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH--HHTTTCCEEEEEEC
T ss_pred cEEEEecCCCCcHHHHHHHHHHH--HHHCCCcEEEEcCC
Confidence 57888999999999999877752 22222245556554
No 460
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=86.59 E-value=0.29 Score=47.84 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=21.1
Q ss_pred eEEEEEEecCcchHHHHHHHHhcC
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
.-.++|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 456889999999999999998874
No 461
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=86.58 E-value=0.32 Score=45.52 Aligned_cols=22 Identities=32% Similarity=0.608 Sum_probs=19.4
Q ss_pred EEEEEecCcchHHHHHHHHhcC
Q 001998 209 IFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
-|.++|.+|+|||||+..+.+.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998764
No 462
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=86.55 E-value=2.2 Score=47.43 Aligned_cols=51 Identities=12% Similarity=0.054 Sum_probs=34.0
Q ss_pred eEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHHHHH
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAIIEE 261 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~ 261 (984)
-.++.|.|.+|+||||+|..++.+.-.. =..++|++.. -+..++...++..
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlE--ms~~ql~~R~~~~ 247 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLE--MGKKENIKRLIVT 247 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSS--SCTTHHHHHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECC--CCHHHHHHHHHHH
Confidence 4578899999999999998887642222 2356666543 4455566655544
No 463
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=86.52 E-value=0.39 Score=46.22 Aligned_cols=25 Identities=16% Similarity=0.306 Sum_probs=21.7
Q ss_pred ceEEEEEEecCcchHHHHHHHHhcC
Q 001998 206 TVQIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
....|+|+|.+|+|||||...+.+.
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3467899999999999999999874
No 464
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=86.48 E-value=0.3 Score=49.24 Aligned_cols=23 Identities=26% Similarity=0.141 Sum_probs=20.5
Q ss_pred eEEEEEEecCcchHHHHHHHHhc
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
...|.|.|+.|+||||+|+.+..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34688999999999999999986
No 465
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=86.42 E-value=0.32 Score=50.18 Aligned_cols=21 Identities=33% Similarity=0.623 Sum_probs=19.5
Q ss_pred EEEEEecCcchHHHHHHHHhc
Q 001998 209 IFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~ 229 (984)
.++|+|..|+|||||.+.++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 578999999999999999987
No 466
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=86.38 E-value=0.33 Score=49.82 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=20.8
Q ss_pred eEEEEEEecCcchHHHHHHHHhc
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
-.+++|+|..|.|||||++.+..
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHH
Confidence 46899999999999999998876
No 467
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=86.19 E-value=0.53 Score=47.22 Aligned_cols=25 Identities=28% Similarity=0.429 Sum_probs=22.0
Q ss_pred ceEEEEEEecCcchHHHHHHHHhcC
Q 001998 206 TVQIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
.-.+|.|.|+.|+||||+++.+...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999874
No 468
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=86.13 E-value=0.33 Score=47.72 Aligned_cols=22 Identities=32% Similarity=0.428 Sum_probs=19.5
Q ss_pred EEEEEecCcchHHHHHHHHhcC
Q 001998 209 IFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
+|.|.|++|+||+|.|+.+...
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5778999999999999998863
No 469
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=86.12 E-value=0.31 Score=54.00 Aligned_cols=25 Identities=28% Similarity=0.403 Sum_probs=22.3
Q ss_pred ceEEEEEEecCcchHHHHHHHHhcC
Q 001998 206 TVQIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
...+|.|+|++|.||||+|+.+...
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4678999999999999999998873
No 470
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=86.09 E-value=0.31 Score=49.23 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=21.9
Q ss_pred CceEEEEEEecCcchHHHHHHHHhc
Q 001998 205 NTVQIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 205 ~~~~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
....+|+|+|+.|.||||+++.+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999999886
No 471
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=86.07 E-value=0.41 Score=52.97 Aligned_cols=25 Identities=32% Similarity=0.376 Sum_probs=21.7
Q ss_pred ceEEEEEEecCcchHHHHHHHHhcC
Q 001998 206 TVQIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
..++|.|+|.+|+||||+|..+...
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999888763
No 472
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=86.04 E-value=0.54 Score=50.35 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=20.6
Q ss_pred EEEEEEecCcchHHHHHHHHhc
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
.+++|+|..|.|||||.+.+..
T Consensus 31 e~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCchHHHHHHHHhc
Confidence 4799999999999999999987
No 473
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=85.99 E-value=0.39 Score=50.25 Aligned_cols=39 Identities=23% Similarity=0.239 Sum_probs=26.1
Q ss_pred eEEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecC
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSD 247 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~ 247 (984)
.++|+|.|-||+||||+|..+..- ....=..++-|....
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~--La~~G~rVlliD~D~ 40 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAA--LAEMGKKVMIVGCDP 40 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH--HHHTTCCEEEEEECS
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHH--HHHCCCeEEEEecCC
Confidence 367888999999999999887752 222212455555543
No 474
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=85.99 E-value=0.33 Score=50.81 Aligned_cols=23 Identities=17% Similarity=0.309 Sum_probs=20.8
Q ss_pred eEEEEEEecCcchHHHHHHHHhc
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
-.+++|+|..|.|||||++.+..
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhh
Confidence 35799999999999999999886
No 475
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=85.79 E-value=0.4 Score=49.82 Aligned_cols=24 Identities=25% Similarity=0.202 Sum_probs=21.5
Q ss_pred ceEEEEEEecCcchHHHHHHHHhc
Q 001998 206 TVQIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
..+++.|+|+.|+||||||..++.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHH
Confidence 356899999999999999999986
No 476
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=85.79 E-value=0.54 Score=50.42 Aligned_cols=22 Identities=36% Similarity=0.632 Sum_probs=20.4
Q ss_pred EEEEEEecCcchHHHHHHHHhc
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
.+++|+|..|.|||||.+.+..
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEEcCCCchHHHHHHHHhc
Confidence 4899999999999999999986
No 477
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=85.78 E-value=1 Score=51.98 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=19.7
Q ss_pred EEEEEEecCcchHHHHHHHHhc
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
+++.|.|.+|.||||++..+..
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~ 226 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVAD 226 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4788999999999999988876
No 478
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=85.76 E-value=0.37 Score=45.63 Aligned_cols=24 Identities=33% Similarity=0.472 Sum_probs=20.7
Q ss_pred eEEEEEEecCcchHHHHHHHHhcC
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
.--|.|+|.+|+|||||...+.+.
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 346889999999999999998764
No 479
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=85.71 E-value=1.2 Score=49.77 Aligned_cols=47 Identities=13% Similarity=0.157 Sum_probs=34.8
Q ss_pred EEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCC-HHHHHHHH
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFD-EFSVAKAI 258 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~-~~~~~~~i 258 (984)
..++|.|..|+|||+|+..+.+. .+-+.++++-+.+... +.++++++
T Consensus 228 qr~~I~g~~g~GKT~L~~~ia~~----~~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 228 GTAAIPGPAGSGKTVTQHQLAKW----SDAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp CEEEECSCCSHHHHHHHHHHHHH----SSCSEEEEEECCSSSSHHHHHHHHT
T ss_pred CeEEeecCCCCCHHHHHHHHHhc----cCCCEEEEEEecccHHHHHHHHHHH
Confidence 36889999999999999998763 2335788888887765 44455543
No 480
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=85.52 E-value=0.36 Score=46.67 Aligned_cols=23 Identities=30% Similarity=0.557 Sum_probs=20.1
Q ss_pred EEEEEEecCcchHHHHHHHHhcC
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
-.|.|+|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46789999999999999998764
No 481
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=85.47 E-value=0.4 Score=49.90 Aligned_cols=22 Identities=32% Similarity=0.392 Sum_probs=19.9
Q ss_pred EEEEEEecCcchHHHHHHHHhc
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
.++.|+|.+|+|||||+..+..
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4899999999999999988875
No 482
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=85.45 E-value=0.38 Score=45.14 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=19.2
Q ss_pred EEEEEecCcchHHHHHHHHhcC
Q 001998 209 IFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
-|.|+|.+|+|||||...+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 3689999999999999998753
No 483
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=85.32 E-value=0.5 Score=52.13 Aligned_cols=87 Identities=9% Similarity=0.055 Sum_probs=50.6
Q ss_pred EEEEEecCcchHHHHHHHHhcCcccccC--CCeEEEEEecCCC-CHHHHHHHHHHHhcC--------CCCCcccH----H
Q 001998 209 IFSMVGMGGIGKTTLAQLAYNDNDVINN--FEIRVWVCVSDPF-DEFSVAKAIIEELEG--------SATDLHEL----N 273 (984)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~~~~~~~~--F~~~~wv~~s~~~-~~~~~~~~i~~~l~~--------~~~~~~~~----~ 273 (984)
.++|.|..|+|||+|+.+++++....+. =+..+++-+.+.. .+.++.+++.+.=.. +..+.... .
T Consensus 154 r~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~~~~ 233 (469)
T 2c61_A 154 KLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVTP 233 (469)
T ss_dssp BCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHHHHH
Confidence 4678899999999999999885433211 1356677776554 455666666543110 11111111 1
Q ss_pred HHHHHHHHHh---CCCceEEEEEcC
Q 001998 274 SLLRRIGANI---AGQKFFMVLDNL 295 (984)
Q Consensus 274 ~~~~~l~~~l---~~kr~LlVlDdv 295 (984)
...-.+.+++ +++.+||++||+
T Consensus 234 ~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 234 RMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp HHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred HHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 1122233333 479999999997
No 484
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=85.32 E-value=0.41 Score=46.11 Aligned_cols=23 Identities=22% Similarity=0.206 Sum_probs=20.3
Q ss_pred EEEEEEecCcchHHHHHHHHhcC
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
+.|.|.|..|+||||||..+...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 46889999999999999998763
No 485
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=85.28 E-value=0.48 Score=44.43 Aligned_cols=24 Identities=25% Similarity=0.415 Sum_probs=20.5
Q ss_pred eEEEEEEecCcchHHHHHHHHhcC
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
.--|.|+|.+|+|||||+..+.+.
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 445789999999999999998764
No 486
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=85.24 E-value=0.52 Score=45.19 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=21.6
Q ss_pred ceEEEEEEecCcchHHHHHHHHhcC
Q 001998 206 TVQIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
....|.|+|.+|+|||||...+.+.
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 3456889999999999999998874
No 487
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=85.21 E-value=3.9 Score=49.73 Aligned_cols=118 Identities=17% Similarity=0.144 Sum_probs=63.5
Q ss_pred EEEEEEecCcchHHHHHHHHhcCcccccCCC-----eEEEEEecCC-------CCHH-----------HHHHHHHHHhcC
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYNDNDVINNFE-----IRVWVCVSDP-------FDEF-----------SVAKAIIEELEG 264 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-----~~~wv~~s~~-------~~~~-----------~~~~~i~~~l~~ 264 (984)
.+++|+|..|.|||||.+.+..- .+.+ ++ ... .+.+. .++. +...++++.++.
T Consensus 462 e~v~LiGpNGsGKSTLLk~LagG-~i~g-~~~~~~~~~~--~v~q~~~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~lgL 537 (986)
T 2iw3_A 462 RRYGICGPNGCGKSTLMRAIANG-QVDG-FPTQEECRTV--YVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGF 537 (986)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHT-CSTT-CCCTTTSCEE--ETTCCCCCCCTTSBHHHHHHTTCSSCHHHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC-CcCC-CccccceeEE--EEcccccccccCCcHHHHHHHhhcCHHHHHHHHHHHcCC
Confidence 47899999999999999999831 1111 11 122 22221 1222 223344555443
Q ss_pred CC-------CCcccHHHHHHHHHHHhCCCceEEEEEcCCCC-CcCChhhHHHhhcCCCCCcEEEEEccchHHHhh
Q 001998 265 SA-------TDLHELNSLLRRIGANIAGQKFFMVLDNLWTD-DYRKWEPFRNCLMNGLRGSKILLTTRKETVARM 331 (984)
Q Consensus 265 ~~-------~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~~~gs~iiiTtr~~~v~~~ 331 (984)
.. ...+.-+.-.-.|.+.+-.++=+++||.--+. |...-..+...+.. .|.-||++|.+......
T Consensus 538 ~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~ 610 (986)
T 2iw3_A 538 TDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDN 610 (986)
T ss_dssp CHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHH
T ss_pred ChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHH
Confidence 20 11112222233455566677789999996431 22222334555554 46778888888766554
No 488
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=85.18 E-value=0.41 Score=50.87 Aligned_cols=25 Identities=32% Similarity=0.496 Sum_probs=22.6
Q ss_pred ceEEEEEEecCcchHHHHHHHHhcC
Q 001998 206 TVQIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
...+++|+|+.|.|||||.+.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4789999999999999999999864
No 489
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=85.10 E-value=0.69 Score=45.69 Aligned_cols=104 Identities=15% Similarity=0.238 Sum_probs=53.3
Q ss_pred EEEEEecCcchHHHHHHHHhcCcccccCCCeEEEEEecCCCCHHHHHHHHHHHhcCCC--------C--CcccHHHHHHH
Q 001998 209 IFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWVCVSDPFDEFSVAKAIIEELEGSA--------T--DLHELNSLLRR 278 (984)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~--------~--~~~~~~~~~~~ 278 (984)
.|.+.|.||+||||+|..+.... ....++. ..+.+...-... . ...+..+.... . ...++...
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l-~~~G~~V-~v~d~D~q~~~~-~-~al~~gl~~~~~~~~~~~~~~~~e~~l~~~--- 80 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQ-LRQGVRV-MAGVVETHGRAE-T-EALLNGLPQQPLLRTEYRGMTLEEMDLDAL--- 80 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHH-HHTTCCE-EEEECCCTTCHH-H-HHHHTTSCBCCCEEEEETTEEEEECCHHHH---
T ss_pred EEEEECCCCCcHHHHHHHHHHHH-HHCCCCE-EEEEeCCCCChh-H-HHHhcCccccCcceeecCCcccccccHHHH---
Confidence 47789999999999988777632 2233443 344443322222 1 11222222111 0 11233332
Q ss_pred HHHHhCCCceEEEEEcCCCCC------cCChhhHHHhhcCCCCCcEEEEEccch
Q 001998 279 IGANIAGQKFFMVLDNLWTDD------YRKWEPFRNCLMNGLRGSKILLTTRKE 326 (984)
Q Consensus 279 l~~~l~~kr~LlVlDdvw~~~------~~~~~~l~~~l~~~~~gs~iiiTtr~~ 326 (984)
+ ..+.=++|+|++-..+ ..-|..+...++. |-.|+.|+.-.
T Consensus 81 L----~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~s---gidVitT~Nlq 127 (228)
T 2r8r_A 81 L----KAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAA---GIDVYTTVNVQ 127 (228)
T ss_dssp H----HHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHT---TCEEEEEEEGG
T ss_pred H----hcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcC---CCCEEEEcccc
Confidence 2 2245599999864321 1245555554443 55788887754
No 490
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=85.03 E-value=0.45 Score=45.63 Aligned_cols=21 Identities=24% Similarity=0.442 Sum_probs=19.2
Q ss_pred EEEEEecCcchHHHHHHHHhc
Q 001998 209 IFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 209 vi~I~G~gGiGKTtLa~~v~~ 229 (984)
+.+|+|..|.|||||+..++-
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999998864
No 491
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=85.02 E-value=0.19 Score=52.53 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=17.9
Q ss_pred eEEEEEEecCcchHHHHHHHHhc
Q 001998 207 VQIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 207 ~~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
..+|+|.|..|+||||+|+.+..
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999998876
No 492
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=84.93 E-value=0.51 Score=44.83 Aligned_cols=23 Identities=17% Similarity=0.195 Sum_probs=20.2
Q ss_pred EEEEEEecCcchHHHHHHHHhcC
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
..|+|+|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999999864
No 493
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=84.88 E-value=0.62 Score=49.82 Aligned_cols=33 Identities=24% Similarity=0.258 Sum_probs=25.4
Q ss_pred EEEEEEecCcchHHHHHHHHhcCcccccCCCeEEEE
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYNDNDVINNFEIRVWV 243 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 243 (984)
.+++|+|..|.|||||.+.++.- .......+++
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl---~~p~~G~I~~ 59 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGF---HVPDSGRILL 59 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTS---SCCSEEEEEE
T ss_pred CEEEEECCCCccHHHHHHHHHcC---CCCCCcEEEE
Confidence 47999999999999999999873 2333455555
No 494
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=84.86 E-value=0.42 Score=44.96 Aligned_cols=22 Identities=36% Similarity=0.409 Sum_probs=19.2
Q ss_pred EEEEEEecCcchHHHHHHHHhc
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
--|.|+|.+|+|||||+..+.+
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 3478999999999999998864
No 495
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=84.80 E-value=0.43 Score=46.62 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=19.9
Q ss_pred EEEEEEecCcchHHHHHHHHhcC
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
..|+|+|.+|+|||||...+.+.
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 35789999999999999998763
No 496
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=84.78 E-value=0.43 Score=45.85 Aligned_cols=25 Identities=28% Similarity=0.274 Sum_probs=20.9
Q ss_pred ceEEEEEEecCcchHHHHHHHHhcC
Q 001998 206 TVQIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 206 ~~~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
..--|.|+|.+|+|||||+..+.+.
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcC
Confidence 3456789999999999999988764
No 497
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=84.76 E-value=1.2 Score=48.77 Aligned_cols=25 Identities=24% Similarity=0.310 Sum_probs=22.7
Q ss_pred CceEEEEEEecCcchHHHHHHHHhc
Q 001998 205 NTVQIFSMVGMGGIGKTTLAQLAYN 229 (984)
Q Consensus 205 ~~~~vi~I~G~gGiGKTtLa~~v~~ 229 (984)
...++..|.|.+|.||||+.+..++
T Consensus 159 ~~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 159 SSAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp CCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred ccccEEEEEcCCCCCHHHHHHHHhc
Confidence 4688999999999999999999886
No 498
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=84.73 E-value=2.1 Score=42.94 Aligned_cols=21 Identities=29% Similarity=0.333 Sum_probs=16.8
Q ss_pred EEEEEEecCcchHHHHHHHHh
Q 001998 208 QIFSMVGMGGIGKTTLAQLAY 228 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~ 228 (984)
+.+.|+|..|.||||+.....
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHH
Confidence 368899999999998765443
No 499
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=84.73 E-value=0.43 Score=44.95 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=19.8
Q ss_pred EEEEEEecCcchHHHHHHHHhcC
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
--|.|+|.+|+|||||...+.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 34789999999999999998764
No 500
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=84.72 E-value=0.41 Score=44.82 Aligned_cols=23 Identities=39% Similarity=0.590 Sum_probs=20.1
Q ss_pred EEEEEEecCcchHHHHHHHHhcC
Q 001998 208 QIFSMVGMGGIGKTTLAQLAYND 230 (984)
Q Consensus 208 ~vi~I~G~gGiGKTtLa~~v~~~ 230 (984)
.-|.|+|.+|+|||||...+.+.
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 45789999999999999998764
Done!