Query 001999
Match_columns 984
No_of_seqs 452 out of 4364
Neff 9.5
Searched_HMMs 46136
Date Thu Mar 28 14:14:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001999.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001999hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.8E-92 3.9E-97 843.9 49.3 597 12-622 3-650 (889)
2 PLN03210 Resistant to P. syrin 100.0 2.6E-63 5.7E-68 628.7 52.5 677 152-941 182-945 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 4.7E-43 1E-47 381.8 19.2 271 159-431 1-285 (287)
4 PLN00113 leucine-rich repeat r 99.9 1.4E-24 3E-29 276.8 21.1 412 498-961 118-534 (968)
5 PLN00113 leucine-rich repeat r 99.9 5.4E-24 1.2E-28 271.4 20.7 426 497-962 139-583 (968)
6 KOG4194 Membrane glycoprotein 99.9 2.3E-22 5E-27 215.9 5.6 384 499-955 53-444 (873)
7 PLN03210 Resistant to P. syrin 99.8 4.5E-20 9.8E-25 235.0 19.1 357 499-943 533-910 (1153)
8 KOG0444 Cytoskeletal regulator 99.8 2.1E-21 4.5E-26 209.5 0.0 390 500-969 9-405 (1255)
9 KOG0472 Leucine-rich repeat pr 99.8 7.3E-22 1.6E-26 203.4 -8.4 176 499-698 46-222 (565)
10 KOG4194 Membrane glycoprotein 99.8 5.4E-20 1.2E-24 197.9 5.0 365 521-960 53-426 (873)
11 KOG0444 Cytoskeletal regulator 99.7 1.1E-19 2.3E-24 196.5 -3.1 322 498-919 55-380 (1255)
12 KOG0618 Serine/threonine phosp 99.7 2.8E-18 6E-23 195.0 -0.1 404 500-962 23-488 (1081)
13 KOG0472 Leucine-rich repeat pr 99.7 2.8E-19 6E-24 184.6 -7.9 177 499-699 115-292 (565)
14 KOG0618 Serine/threonine phosp 99.6 5.2E-17 1.1E-21 184.8 -0.7 363 500-939 47-489 (1081)
15 KOG0617 Ras suppressor protein 99.5 1.2E-15 2.7E-20 139.8 -4.1 166 511-700 24-191 (264)
16 KOG4658 Apoptotic ATPase [Sign 99.4 5.5E-13 1.2E-17 161.4 7.9 104 498-602 545-653 (889)
17 PRK15387 E3 ubiquitin-protein 99.3 5E-12 1.1E-16 149.8 12.5 108 500-622 203-310 (788)
18 KOG0617 Ras suppressor protein 99.3 7E-14 1.5E-18 128.4 -3.2 148 498-659 33-182 (264)
19 PRK15387 E3 ubiquitin-protein 99.3 1E-11 2.3E-16 147.1 12.6 124 791-946 342-465 (788)
20 PRK04841 transcriptional regul 99.3 3.2E-10 7E-15 144.3 26.8 290 150-478 10-333 (903)
21 PRK15370 E3 ubiquitin-protein 99.3 8E-12 1.7E-16 149.2 10.5 113 499-622 179-291 (754)
22 KOG4237 Extracellular matrix p 99.2 7.7E-13 1.7E-17 137.5 -2.4 127 520-658 67-196 (498)
23 TIGR03015 pepcterm_ATPase puta 99.1 5.4E-09 1.2E-13 112.5 23.0 177 173-352 41-242 (269)
24 PRK15370 E3 ubiquitin-protein 99.1 8.8E-11 1.9E-15 140.3 9.8 115 520-659 178-292 (754)
25 PRK00411 cdc6 cell division co 99.1 1.6E-08 3.4E-13 115.4 27.2 289 152-457 28-358 (394)
26 TIGR00635 ruvB Holliday juncti 99.1 2.9E-09 6.3E-14 116.8 19.8 270 154-458 4-290 (305)
27 PRK00080 ruvB Holliday junctio 99.1 8.1E-09 1.8E-13 113.9 20.2 272 152-458 23-311 (328)
28 TIGR02928 orc1/cdc6 family rep 99.0 8.8E-08 1.9E-12 108.1 27.8 288 153-457 14-350 (365)
29 KOG4341 F-box protein containi 99.0 3E-11 6.6E-16 126.9 -3.0 151 790-943 293-443 (483)
30 cd00116 LRR_RI Leucine-rich re 99.0 2.2E-10 4.7E-15 127.0 2.9 140 540-691 19-174 (319)
31 PF01637 Arch_ATPase: Archaeal 98.9 3.5E-09 7.6E-14 111.5 11.1 187 156-347 1-233 (234)
32 COG2909 MalT ATP-dependent tra 98.9 5.3E-08 1.1E-12 112.3 20.5 290 151-479 16-340 (894)
33 cd00116 LRR_RI Leucine-rich re 98.9 7.5E-10 1.6E-14 122.7 3.7 130 548-693 2-148 (319)
34 PF05729 NACHT: NACHT domain 98.8 2.7E-08 5.8E-13 98.4 11.9 137 176-317 1-163 (166)
35 COG2256 MGS1 ATPase related to 98.8 3.8E-07 8.2E-12 96.8 19.8 225 150-396 20-266 (436)
36 PF14580 LRR_9: Leucine-rich r 98.8 7.3E-09 1.6E-13 100.9 6.6 99 520-622 19-121 (175)
37 KOG4237 Extracellular matrix p 98.8 1.4E-09 3E-14 113.7 -0.1 266 496-800 65-355 (498)
38 PRK13342 recombination factor 98.7 3.9E-07 8.5E-12 103.7 18.9 179 150-351 8-199 (413)
39 PF14580 LRR_9: Leucine-rich r 98.7 2E-08 4.3E-13 97.9 6.3 122 498-622 19-148 (175)
40 KOG0532 Leucine-rich repeat (L 98.6 1.7E-09 3.6E-14 118.1 -4.6 174 499-698 76-250 (722)
41 KOG4341 F-box protein containi 98.6 4.7E-09 1E-13 110.7 -1.2 139 789-935 318-461 (483)
42 PRK06893 DNA replication initi 98.5 8.6E-07 1.9E-11 92.2 13.1 149 173-349 37-204 (229)
43 PTZ00112 origin recognition co 98.5 1.6E-05 3.4E-10 93.0 23.8 198 154-352 755-986 (1164)
44 KOG2120 SCF ubiquitin ligase, 98.5 7.3E-09 1.6E-13 104.3 -3.2 117 788-911 257-373 (419)
45 COG3899 Predicted ATPase [Gene 98.5 1.1E-05 2.3E-10 99.2 22.8 299 155-476 1-385 (849)
46 PRK04195 replication factor C 98.4 1.3E-05 2.9E-10 93.1 21.1 241 150-430 10-271 (482)
47 TIGR03420 DnaA_homol_Hda DnaA 98.4 3.4E-06 7.3E-11 88.2 13.5 165 158-350 21-203 (226)
48 KOG1259 Nischarin, modulator o 98.4 6.8E-08 1.5E-12 97.3 -0.1 125 494-622 280-407 (490)
49 PF05496 RuvB_N: Holliday junc 98.4 5.4E-06 1.2E-10 82.6 12.9 171 150-349 20-222 (233)
50 KOG3207 Beta-tubulin folding c 98.4 2E-07 4.4E-12 99.2 3.0 38 648-692 195-232 (505)
51 PRK07003 DNA polymerase III su 98.4 3.6E-05 7.9E-10 89.8 21.4 178 152-347 14-220 (830)
52 KOG1259 Nischarin, modulator o 98.3 8.3E-08 1.8E-12 96.7 -0.3 127 517-659 281-408 (490)
53 cd01128 rho_factor Transcripti 98.3 1.4E-06 3E-11 90.7 8.3 99 166-265 6-115 (249)
54 TIGR02903 spore_lon_C ATP-depe 98.3 7E-05 1.5E-09 89.0 23.7 169 151-319 151-368 (615)
55 PRK12402 replication factor C 98.3 1.4E-05 3E-10 89.2 17.0 190 153-347 14-225 (337)
56 PF13173 AAA_14: AAA domain 98.3 1.8E-06 4E-11 80.9 8.3 116 175-309 2-127 (128)
57 COG4886 Leucine-rich repeat (L 98.3 5.1E-07 1.1E-11 103.1 4.6 171 498-693 116-288 (394)
58 PF13855 LRR_8: Leucine rich r 98.3 6.7E-07 1.5E-11 71.4 3.3 58 520-577 1-59 (61)
59 PRK05564 DNA polymerase III su 98.3 3.3E-05 7.2E-10 84.7 17.6 172 154-347 4-189 (313)
60 KOG2028 ATPase related to the 98.2 6.4E-06 1.4E-10 85.7 11.0 174 152-343 136-331 (554)
61 PRK14961 DNA polymerase III su 98.2 4.1E-05 9E-10 85.5 18.4 179 152-348 14-220 (363)
62 PLN03025 replication factor C 98.2 2.7E-05 5.9E-10 85.6 15.8 179 151-345 10-197 (319)
63 PTZ00202 tuzin; Provisional 98.2 4.2E-05 9.2E-10 83.1 16.4 159 149-317 257-434 (550)
64 PRK14949 DNA polymerase III su 98.2 3E-05 6.5E-10 92.3 16.6 180 152-349 14-221 (944)
65 cd00009 AAA The AAA+ (ATPases 98.2 1.3E-05 2.8E-10 77.2 11.7 121 157-290 1-131 (151)
66 PRK00440 rfc replication facto 98.2 0.00014 3.1E-09 80.3 21.5 179 152-347 15-202 (319)
67 KOG0532 Leucine-rich repeat (L 98.2 3.4E-07 7.3E-12 100.5 0.3 124 496-622 119-242 (722)
68 PRK09376 rho transcription ter 98.2 2.9E-06 6.2E-11 91.7 7.3 100 165-265 158-268 (416)
69 COG3903 Predicted ATPase [Gene 98.2 1.2E-05 2.6E-10 86.4 11.3 292 174-481 13-318 (414)
70 PRK13341 recombination factor 98.2 2.2E-05 4.8E-10 94.0 14.9 168 152-343 26-212 (725)
71 PRK14963 DNA polymerase III su 98.1 0.00012 2.5E-09 84.6 19.8 182 152-345 12-214 (504)
72 COG4886 Leucine-rich repeat (L 98.1 1.5E-06 3.3E-11 99.2 4.2 172 503-698 98-271 (394)
73 PLN03150 hypothetical protein; 98.1 7.1E-06 1.5E-10 98.3 9.9 101 521-622 419-523 (623)
74 PRK08727 hypothetical protein; 98.1 4.8E-05 1E-09 79.3 14.8 163 155-345 20-201 (233)
75 PF13401 AAA_22: AAA domain; P 98.1 4.3E-06 9.3E-11 78.9 6.4 115 174-288 3-125 (131)
76 KOG2120 SCF ubiquitin ligase, 98.1 2E-07 4.3E-12 94.2 -2.9 186 744-939 186-376 (419)
77 COG1474 CDC6 Cdc6-related prot 98.1 9.9E-05 2.1E-09 81.5 17.8 194 154-348 17-238 (366)
78 PRK14960 DNA polymerase III su 98.1 0.00021 4.6E-09 82.7 20.4 179 152-348 13-219 (702)
79 PRK08084 DNA replication initi 98.1 6.1E-05 1.3E-09 78.7 14.6 163 157-347 26-208 (235)
80 KOG3207 Beta-tubulin folding c 98.0 1.2E-06 2.6E-11 93.5 0.9 127 496-622 119-254 (505)
81 PF13191 AAA_16: AAA ATPase do 98.0 1.1E-05 2.3E-10 81.4 7.7 46 155-200 1-49 (185)
82 PRK12323 DNA polymerase III su 98.0 6.4E-05 1.4E-09 86.6 14.5 179 152-348 14-225 (700)
83 PRK09087 hypothetical protein; 98.0 6.8E-05 1.5E-09 77.4 13.5 137 174-347 43-194 (226)
84 PRK06645 DNA polymerase III su 98.0 0.00019 4.2E-09 82.4 18.3 176 152-345 19-226 (507)
85 PRK09112 DNA polymerase III su 98.0 0.00019 4.1E-09 79.0 17.4 193 150-349 19-241 (351)
86 PRK14956 DNA polymerase III su 98.0 8E-05 1.7E-09 83.7 14.2 188 152-344 16-218 (484)
87 PRK07471 DNA polymerase III su 98.0 0.00025 5.5E-09 78.5 18.0 189 150-349 15-239 (365)
88 PRK14957 DNA polymerase III su 98.0 0.00018 3.9E-09 83.2 17.4 172 153-343 15-215 (546)
89 PRK14962 DNA polymerase III su 98.0 0.00022 4.7E-09 81.7 17.5 182 151-350 11-221 (472)
90 PLN03150 hypothetical protein; 98.0 1.5E-05 3.2E-10 95.5 8.5 78 545-622 419-498 (623)
91 PRK08691 DNA polymerase III su 98.0 0.00013 2.9E-09 85.1 15.7 178 152-347 14-219 (709)
92 COG2255 RuvB Holliday junction 98.0 0.00074 1.6E-08 68.9 18.8 170 150-348 22-223 (332)
93 PRK07940 DNA polymerase III su 97.9 0.0003 6.4E-09 78.6 17.4 171 154-348 5-213 (394)
94 PF13855 LRR_8: Leucine rich r 97.9 7.7E-06 1.7E-10 65.2 3.5 59 544-603 1-61 (61)
95 TIGR01242 26Sp45 26S proteasom 97.9 0.0001 2.2E-09 82.7 13.8 165 154-342 122-328 (364)
96 PRK14964 DNA polymerase III su 97.9 0.00029 6.2E-09 80.3 16.9 176 152-345 11-214 (491)
97 PRK07994 DNA polymerase III su 97.9 0.00018 3.9E-09 84.6 15.6 179 151-348 13-220 (647)
98 PRK14951 DNA polymerase III su 97.9 0.00026 5.6E-09 83.0 16.8 178 152-347 14-224 (618)
99 PRK14958 DNA polymerase III su 97.9 0.00019 4.1E-09 83.1 15.5 178 152-347 14-219 (509)
100 PRK05896 DNA polymerase III su 97.9 0.00023 4.9E-09 82.4 15.7 177 151-345 13-217 (605)
101 TIGR00767 rho transcription te 97.9 6.3E-05 1.4E-09 82.0 10.4 92 173-265 166-267 (415)
102 TIGR02397 dnaX_nterm DNA polym 97.9 0.00057 1.2E-08 76.8 18.6 180 151-349 11-219 (355)
103 PF14516 AAA_35: AAA-like doma 97.9 0.007 1.5E-07 66.7 26.4 195 152-355 9-246 (331)
104 PRK05642 DNA replication initi 97.8 0.00014 3.1E-09 75.8 11.9 145 175-347 45-207 (234)
105 TIGR00678 holB DNA polymerase 97.8 0.00052 1.1E-08 69.2 15.6 155 165-344 3-187 (188)
106 PRK14970 DNA polymerase III su 97.8 0.00072 1.6E-08 76.2 18.0 176 152-345 15-206 (367)
107 PRK14969 DNA polymerase III su 97.8 0.00035 7.7E-09 81.5 15.8 176 152-345 14-217 (527)
108 PRK14955 DNA polymerase III su 97.8 0.00034 7.4E-09 79.2 14.9 196 150-347 12-227 (397)
109 PRK15386 type III secretion pr 97.8 5.6E-05 1.2E-09 82.9 7.9 32 901-936 156-187 (426)
110 PRK08903 DnaA regulatory inact 97.8 0.00037 8E-09 72.7 13.8 167 154-352 18-203 (227)
111 PRK03992 proteasome-activating 97.7 0.0005 1.1E-08 77.5 15.2 164 154-341 131-336 (389)
112 PRK14087 dnaA chromosomal repl 97.7 0.0012 2.6E-08 75.6 18.1 163 175-350 141-321 (450)
113 TIGR03345 VI_ClpV1 type VI sec 97.7 0.00049 1.1E-08 84.8 15.9 175 153-340 186-388 (852)
114 KOG1859 Leucine-rich repeat pr 97.7 3E-06 6.5E-11 95.6 -3.1 158 494-667 105-296 (1096)
115 PRK14959 DNA polymerase III su 97.7 0.0021 4.6E-08 74.9 19.9 183 152-352 14-225 (624)
116 PF00308 Bac_DnaA: Bacterial d 97.7 0.00046 1E-08 71.0 13.1 151 174-341 33-201 (219)
117 PRK09111 DNA polymerase III su 97.7 0.00098 2.1E-08 78.5 16.9 190 152-348 22-233 (598)
118 KOG3665 ZYG-1-like serine/thre 97.7 3.2E-05 7E-10 92.2 4.3 124 497-622 121-258 (699)
119 PHA02544 44 clamp loader, smal 97.7 0.00063 1.4E-08 75.0 14.2 143 152-315 19-171 (316)
120 PRK15386 type III secretion pr 97.6 0.00016 3.5E-09 79.4 8.9 82 497-589 51-136 (426)
121 PRK08451 DNA polymerase III su 97.6 0.0023 4.9E-08 73.8 18.5 180 152-349 12-219 (535)
122 PRK14950 DNA polymerase III su 97.6 0.0018 4E-08 77.0 18.0 190 152-349 14-222 (585)
123 PRK14971 DNA polymerase III su 97.6 0.0019 4.2E-08 76.6 18.1 176 153-347 16-221 (614)
124 PTZ00454 26S protease regulato 97.6 0.0012 2.7E-08 74.0 15.5 166 154-342 145-351 (398)
125 PRK14952 DNA polymerase III su 97.6 0.002 4.4E-08 75.4 17.8 178 152-348 11-220 (584)
126 PRK11331 5-methylcytosine-spec 97.6 0.00039 8.5E-09 77.3 11.2 109 153-265 174-284 (459)
127 PRK14954 DNA polymerase III su 97.6 0.0018 4E-08 76.3 17.3 190 152-344 14-224 (620)
128 KOG1909 Ran GTPase-activating 97.6 1.8E-05 3.8E-10 82.6 0.3 44 646-693 181-224 (382)
129 PRK07133 DNA polymerase III su 97.6 0.0016 3.6E-08 77.1 16.6 185 152-348 16-219 (725)
130 PF05621 TniB: Bacterial TniB 97.6 0.0028 6E-08 66.7 16.4 194 154-347 34-260 (302)
131 KOG2543 Origin recognition com 97.6 0.0015 3.2E-08 69.5 14.2 158 153-316 5-192 (438)
132 PRK07764 DNA polymerase III su 97.5 0.0018 3.8E-08 79.1 17.0 175 153-346 14-219 (824)
133 PRK14953 DNA polymerase III su 97.5 0.0031 6.8E-08 72.7 17.9 174 153-349 15-221 (486)
134 TIGR00763 lon ATP-dependent pr 97.5 0.017 3.7E-07 71.4 25.4 153 154-317 320-505 (775)
135 PRK06305 DNA polymerase III su 97.5 0.0023 4.9E-08 73.3 16.6 175 152-345 15-219 (451)
136 KOG2004 Mitochondrial ATP-depe 97.5 0.0038 8.2E-08 71.5 17.4 151 153-317 410-596 (906)
137 KOG2227 Pre-initiation complex 97.5 0.0044 9.6E-08 67.8 17.2 187 152-341 148-361 (529)
138 PRK06620 hypothetical protein; 97.5 0.0009 1.9E-08 68.5 11.5 128 176-342 45-183 (214)
139 CHL00181 cbbX CbbX; Provisiona 97.5 0.0016 3.6E-08 69.8 13.9 150 155-319 24-211 (287)
140 COG1373 Predicted ATPase (AAA+ 97.5 0.0016 3.5E-08 73.3 14.4 134 158-314 21-164 (398)
141 PTZ00361 26 proteosome regulat 97.5 0.0006 1.3E-08 76.9 10.8 148 154-320 183-370 (438)
142 CHL00095 clpC Clp protease ATP 97.5 0.001 2.2E-08 82.6 13.8 151 154-316 179-353 (821)
143 COG0466 Lon ATP-dependent Lon 97.5 0.0059 1.3E-07 70.4 18.4 150 154-317 323-508 (782)
144 TIGR02881 spore_V_K stage V sp 97.5 0.0013 2.8E-08 70.1 12.7 150 155-319 7-193 (261)
145 TIGR02639 ClpA ATP-dependent C 97.4 0.0013 2.9E-08 80.6 14.2 154 153-318 181-359 (731)
146 KOG0991 Replication factor C, 97.4 0.0031 6.7E-08 62.3 13.3 100 153-266 26-126 (333)
147 TIGR00362 DnaA chromosomal rep 97.4 0.0038 8.3E-08 71.2 16.8 152 175-345 136-307 (405)
148 KOG3665 ZYG-1-like serine/thre 97.4 0.00012 2.7E-09 87.3 4.6 137 544-694 122-262 (699)
149 PRK00149 dnaA chromosomal repl 97.4 0.0072 1.6E-07 69.9 18.9 187 163-368 134-349 (450)
150 TIGR03689 pup_AAA proteasome A 97.4 0.002 4.3E-08 73.9 13.8 153 154-320 182-381 (512)
151 PRK06647 DNA polymerase III su 97.4 0.0061 1.3E-07 71.5 18.2 178 151-348 13-220 (563)
152 KOG0989 Replication factor C, 97.4 0.0028 6E-08 65.6 13.2 180 152-343 34-225 (346)
153 PRK07399 DNA polymerase III su 97.4 0.022 4.8E-07 61.9 21.1 191 154-349 4-222 (314)
154 COG0593 DnaA ATPase involved i 97.4 0.0049 1.1E-07 68.1 15.9 131 174-320 112-260 (408)
155 PF12799 LRR_4: Leucine Rich r 97.4 0.0002 4.3E-09 52.3 3.5 32 545-576 2-33 (44)
156 TIGR02880 cbbX_cfxQ probable R 97.3 0.0034 7.4E-08 67.4 14.3 150 155-319 23-210 (284)
157 PF12799 LRR_4: Leucine Rich r 97.3 0.00019 4.1E-09 52.4 3.2 41 520-561 1-41 (44)
158 PRK14086 dnaA chromosomal repl 97.3 0.0043 9.3E-08 72.1 15.6 149 175-342 314-482 (617)
159 PRK14088 dnaA chromosomal repl 97.3 0.0042 9.1E-08 71.1 15.6 163 165-344 119-301 (440)
160 KOG1859 Leucine-rich repeat pr 97.3 1.4E-05 3E-10 90.4 -4.7 128 491-623 157-288 (1096)
161 PRK10787 DNA-binding ATP-depen 97.3 0.0059 1.3E-07 74.6 17.2 153 154-317 322-506 (784)
162 KOG1644 U2-associated snRNP A' 97.3 0.00034 7.3E-09 67.7 5.1 78 500-577 44-123 (233)
163 KOG4579 Leucine-rich repeat (L 97.3 7.4E-05 1.6E-09 67.4 0.4 89 520-609 53-141 (177)
164 PRK14948 DNA polymerase III su 97.3 0.011 2.4E-07 70.3 18.6 192 152-350 14-224 (620)
165 PRK05563 DNA polymerase III su 97.2 0.015 3.2E-07 68.7 18.6 186 152-346 14-218 (559)
166 PF04665 Pox_A32: Poxvirus A32 97.2 0.0019 4.2E-08 66.2 9.8 35 177-213 15-49 (241)
167 PF05673 DUF815: Protein of un 97.2 0.015 3.3E-07 59.2 15.7 48 152-199 25-76 (249)
168 TIGR03346 chaperone_ClpB ATP-d 97.2 0.0063 1.4E-07 75.9 15.9 154 153-318 172-350 (852)
169 PRK14965 DNA polymerase III su 97.2 0.0089 1.9E-07 70.9 16.3 169 151-343 13-215 (576)
170 KOG1909 Ran GTPase-activating 97.1 0.00013 2.8E-09 76.4 0.8 184 499-694 93-310 (382)
171 PRK11034 clpA ATP-dependent Cl 97.1 0.0022 4.8E-08 77.6 11.3 152 154-317 186-362 (758)
172 PRK10865 protein disaggregatio 97.1 0.004 8.6E-08 77.3 13.7 152 153-317 177-354 (857)
173 PRK12422 chromosomal replicati 97.1 0.02 4.2E-07 65.5 18.1 147 175-340 141-305 (445)
174 PRK08116 hypothetical protein; 97.1 0.0025 5.5E-08 67.7 10.1 100 175-288 114-220 (268)
175 KOG1947 Leucine rich repeat pr 97.1 0.0002 4.3E-09 84.4 1.9 36 848-884 403-439 (482)
176 PRK10536 hypothetical protein; 97.1 0.0049 1.1E-07 63.5 11.5 130 150-286 51-210 (262)
177 KOG2982 Uncharacterized conser 97.1 0.00045 9.7E-09 70.5 3.5 41 845-886 223-263 (418)
178 COG0542 clpA ATP-binding subun 97.0 0.022 4.8E-07 67.7 17.9 104 154-265 491-605 (786)
179 smart00382 AAA ATPases associa 97.0 0.0024 5.2E-08 60.7 8.4 90 175-267 2-92 (148)
180 KOG4579 Leucine-rich repeat (L 97.0 0.00019 4E-09 64.8 0.3 97 525-622 32-131 (177)
181 TIGR00602 rad24 checkpoint pro 97.0 0.0065 1.4E-07 71.7 13.0 197 151-351 81-326 (637)
182 TIGR01241 FtsH_fam ATP-depende 97.0 0.0086 1.9E-07 70.2 14.1 166 154-341 55-259 (495)
183 KOG0531 Protein phosphatase 1, 97.0 0.00019 4.2E-09 82.1 0.3 120 499-622 73-194 (414)
184 KOG1644 U2-associated snRNP A' 97.0 0.001 2.2E-08 64.4 5.1 99 521-622 43-148 (233)
185 KOG0531 Protein phosphatase 1, 97.0 0.00014 3.1E-09 83.2 -1.0 122 496-622 93-216 (414)
186 CHL00176 ftsH cell division pr 97.0 0.012 2.6E-07 70.0 14.9 165 154-340 183-386 (638)
187 PRK08181 transposase; Validate 96.9 0.015 3.3E-07 61.4 14.1 103 168-289 101-209 (269)
188 PRK08118 topology modulation p 96.9 0.00051 1.1E-08 67.4 2.6 35 176-210 2-37 (167)
189 PRK12608 transcription termina 96.9 0.0071 1.5E-07 66.0 11.4 101 163-264 120-231 (380)
190 COG1222 RPT1 ATP-dependent 26S 96.8 0.052 1.1E-06 57.7 16.5 188 154-367 151-391 (406)
191 PRK10865 protein disaggregatio 96.8 0.11 2.4E-06 64.7 22.4 46 154-199 568-622 (857)
192 PRK05707 DNA polymerase III su 96.8 0.032 7E-07 61.1 15.5 91 252-348 105-203 (328)
193 KOG0733 Nuclear AAA ATPase (VC 96.7 0.037 7.9E-07 62.6 15.2 91 154-264 190-293 (802)
194 PF00004 AAA: ATPase family as 96.7 0.0044 9.6E-08 58.2 7.2 23 178-200 1-23 (132)
195 PRK12377 putative replication 96.7 0.0063 1.4E-07 63.5 8.8 75 174-264 100-174 (248)
196 PF10443 RNA12: RNA12 protein; 96.6 0.13 2.8E-06 56.9 18.6 189 159-355 1-285 (431)
197 PRK07261 topology modulation p 96.6 0.0071 1.5E-07 59.7 8.1 67 177-265 2-69 (171)
198 KOG2982 Uncharacterized conser 96.6 0.0015 3.2E-08 66.9 3.0 33 590-622 70-105 (418)
199 KOG1969 DNA replication checkp 96.6 0.12 2.7E-06 59.9 18.2 76 173-265 324-399 (877)
200 KOG2035 Replication factor C, 96.5 0.14 3.1E-06 52.4 16.5 225 154-392 13-281 (351)
201 KOG1947 Leucine rich repeat pr 96.5 0.00045 9.8E-09 81.3 -1.3 190 742-939 187-389 (482)
202 COG3267 ExeA Type II secretory 96.5 0.19 4.1E-06 51.3 17.2 173 173-350 49-247 (269)
203 PRK07952 DNA replication prote 96.5 0.013 2.8E-07 61.0 9.2 112 161-287 83-203 (244)
204 KOG2123 Uncharacterized conser 96.3 0.00039 8.5E-09 70.3 -3.0 81 497-579 18-100 (388)
205 smart00763 AAA_PrkA PrkA AAA d 96.3 0.012 2.7E-07 63.8 8.1 46 155-200 52-103 (361)
206 KOG2228 Origin recognition com 96.2 0.058 1.3E-06 56.8 12.2 164 152-318 22-220 (408)
207 cd01133 F1-ATPase_beta F1 ATP 96.2 0.024 5.1E-07 59.6 9.4 91 173-265 67-175 (274)
208 CHL00095 clpC Clp protease ATP 96.2 0.096 2.1E-06 65.3 16.5 105 154-265 509-623 (821)
209 PRK09361 radB DNA repair and r 96.2 0.029 6.2E-07 58.4 10.2 87 173-263 21-117 (225)
210 PRK08769 DNA polymerase III su 96.2 0.21 4.5E-06 54.3 16.9 169 160-349 10-209 (319)
211 PF13177 DNA_pol3_delta2: DNA 96.2 0.083 1.8E-06 51.5 12.7 132 158-305 1-162 (162)
212 TIGR01243 CDC48 AAA family ATP 96.2 0.059 1.3E-06 66.5 14.4 168 154-343 178-382 (733)
213 PRK14722 flhF flagellar biosyn 96.2 0.31 6.8E-06 53.9 18.3 85 174-263 136-225 (374)
214 TIGR02237 recomb_radB DNA repa 96.2 0.023 5E-07 58.3 9.2 88 173-263 10-107 (209)
215 PF02562 PhoH: PhoH-like prote 96.2 0.0057 1.2E-07 61.3 4.5 125 158-286 4-153 (205)
216 PRK05541 adenylylsulfate kinas 96.1 0.014 3.1E-07 58.0 7.2 36 174-211 6-41 (176)
217 TIGR01243 CDC48 AAA family ATP 96.1 0.11 2.5E-06 64.0 16.5 165 154-342 453-657 (733)
218 TIGR03346 chaperone_ClpB ATP-d 96.1 0.043 9.4E-07 68.5 12.8 60 154-215 565-633 (852)
219 PRK06921 hypothetical protein; 96.1 0.019 4.1E-07 61.0 8.3 38 174-213 116-154 (266)
220 PRK12727 flagellar biosynthesi 96.1 0.19 4.2E-06 57.4 16.5 25 174-198 349-373 (559)
221 PRK08058 DNA polymerase III su 96.1 0.12 2.7E-06 56.9 14.9 145 155-315 6-180 (329)
222 PHA00729 NTP-binding motif con 96.0 0.019 4.1E-07 58.4 7.5 35 165-199 7-41 (226)
223 PTZ00494 tuzin-like protein; P 96.0 1.5 3.2E-05 48.6 21.6 155 152-317 369-544 (664)
224 PF13207 AAA_17: AAA domain; P 96.0 0.0053 1.1E-07 56.8 3.1 23 177-199 1-23 (121)
225 COG1875 NYN ribonuclease and A 95.9 0.034 7.3E-07 59.2 9.0 129 157-287 227-386 (436)
226 PRK09183 transposase/IS protei 95.9 0.025 5.3E-07 59.9 8.1 25 174-198 101-125 (259)
227 cd01393 recA_like RecA is a b 95.9 0.064 1.4E-06 55.8 11.2 88 173-263 17-124 (226)
228 PRK06526 transposase; Provisio 95.9 0.014 3.1E-07 61.3 6.2 74 174-264 97-170 (254)
229 PRK05703 flhF flagellar biosyn 95.9 0.32 7E-06 55.3 17.5 83 175-262 221-308 (424)
230 TIGR02639 ClpA ATP-dependent C 95.9 0.026 5.7E-07 69.3 9.3 102 154-265 454-565 (731)
231 PRK08939 primosomal protein Dn 95.9 0.024 5.3E-07 61.3 8.0 113 158-287 135-259 (306)
232 TIGR02902 spore_lonB ATP-depen 95.8 0.12 2.6E-06 60.7 14.3 46 153-198 64-109 (531)
233 CHL00195 ycf46 Ycf46; Provisio 95.8 0.15 3.2E-06 58.9 14.5 168 154-342 228-429 (489)
234 PRK06835 DNA replication prote 95.8 0.021 4.6E-07 62.3 7.3 111 162-287 168-287 (329)
235 COG1484 DnaC DNA replication p 95.8 0.03 6.6E-07 58.9 8.1 89 158-264 87-178 (254)
236 COG2812 DnaX DNA polymerase II 95.7 0.053 1.1E-06 62.0 10.3 182 153-343 15-215 (515)
237 cd01120 RecA-like_NTPases RecA 95.7 0.041 9E-07 53.7 8.5 40 177-218 1-40 (165)
238 KOG0730 AAA+-type ATPase [Post 95.7 0.4 8.6E-06 55.4 16.9 51 153-205 433-496 (693)
239 cd01123 Rad51_DMC1_radA Rad51_ 95.7 0.049 1.1E-06 57.1 9.4 91 173-264 17-126 (235)
240 KOG0736 Peroxisome assembly fa 95.7 0.36 7.9E-06 56.5 16.5 164 153-339 671-876 (953)
241 TIGR03345 VI_ClpV1 type VI sec 95.7 0.048 1E-06 67.7 10.5 47 154-200 566-621 (852)
242 KOG2739 Leucine-rich acidic nu 95.7 0.0068 1.5E-07 61.6 2.6 37 541-577 62-101 (260)
243 COG0470 HolB ATPase involved i 95.7 0.1 2.2E-06 57.7 12.4 137 155-306 2-170 (325)
244 cd01394 radB RadB. The archaea 95.6 0.074 1.6E-06 55.0 10.2 44 173-218 17-60 (218)
245 PRK06871 DNA polymerase III su 95.6 0.65 1.4E-05 50.6 17.6 170 161-345 9-200 (325)
246 PRK06090 DNA polymerase III su 95.6 0.52 1.1E-05 51.2 16.7 156 161-348 10-201 (319)
247 PRK06696 uridine kinase; Valid 95.5 0.03 6.4E-07 58.1 7.0 43 158-200 2-47 (223)
248 KOG2123 Uncharacterized conser 95.5 0.0011 2.3E-08 67.2 -3.6 101 845-957 18-124 (388)
249 PRK05800 cobU adenosylcobinami 95.5 0.0099 2.2E-07 58.3 3.0 80 176-262 2-85 (170)
250 KOG0741 AAA+-type ATPase [Post 95.4 0.28 6.1E-06 54.8 13.8 141 173-338 536-704 (744)
251 PF08423 Rad51: Rad51; InterP 95.4 0.088 1.9E-06 55.6 9.9 89 174-263 37-143 (256)
252 PRK04296 thymidine kinase; Pro 95.4 0.023 5E-07 57.1 5.3 110 176-290 3-117 (190)
253 PRK00771 signal recognition pa 95.4 0.46 1E-05 54.0 16.1 85 174-262 94-184 (437)
254 PRK07993 DNA polymerase III su 95.4 0.57 1.2E-05 51.5 16.4 160 161-346 9-202 (334)
255 KOG3864 Uncharacterized conser 95.4 0.0027 5.8E-08 61.7 -1.4 84 849-937 104-187 (221)
256 PRK13695 putative NTPase; Prov 95.3 0.028 6.1E-07 55.7 5.8 34 177-211 2-35 (174)
257 PRK04301 radA DNA repair and r 95.3 0.14 3.1E-06 56.1 11.5 58 173-231 100-161 (317)
258 cd01131 PilT Pilus retraction 95.2 0.033 7.1E-07 56.5 5.9 108 176-289 2-109 (198)
259 PF00448 SRP54: SRP54-type pro 95.2 0.088 1.9E-06 53.1 8.9 57 176-234 2-59 (196)
260 PRK15455 PrkA family serine pr 95.2 0.021 4.5E-07 65.3 4.7 47 154-200 76-128 (644)
261 PF01583 APS_kinase: Adenylyls 95.2 0.016 3.4E-07 55.4 3.2 35 175-211 2-36 (156)
262 TIGR02640 gas_vesic_GvpN gas v 95.2 0.27 5.9E-06 52.3 13.0 56 161-223 9-64 (262)
263 PF00158 Sigma54_activat: Sigm 95.2 0.18 3.9E-06 49.4 10.7 70 156-228 1-72 (168)
264 PF13671 AAA_33: AAA domain; P 95.2 0.06 1.3E-06 51.3 7.3 23 177-199 1-23 (143)
265 TIGR01359 UMP_CMP_kin_fam UMP- 95.1 0.051 1.1E-06 54.4 6.8 24 177-200 1-24 (183)
266 COG4608 AppF ABC-type oligopep 95.1 0.087 1.9E-06 54.5 8.3 118 173-293 37-174 (268)
267 cd03214 ABC_Iron-Siderophores_ 95.1 0.19 4.2E-06 50.0 10.8 116 173-292 23-161 (180)
268 cd03238 ABC_UvrA The excision 95.0 0.11 2.4E-06 51.3 8.8 119 173-301 19-161 (176)
269 PRK04132 replication factor C 95.0 0.46 9.9E-06 58.2 15.6 149 183-350 574-733 (846)
270 PRK11889 flhF flagellar biosyn 95.0 0.19 4.1E-06 55.3 11.1 26 174-199 240-265 (436)
271 cd03216 ABC_Carb_Monos_I This 95.0 0.086 1.9E-06 51.6 8.0 112 173-291 24-144 (163)
272 KOG0731 AAA+-type ATPase conta 95.0 0.53 1.1E-05 56.1 15.5 170 154-345 311-521 (774)
273 PRK09270 nucleoside triphospha 95.0 0.096 2.1E-06 54.5 8.6 28 173-200 31-58 (229)
274 COG1136 SalX ABC-type antimicr 94.9 0.15 3.3E-06 51.8 9.6 63 240-302 147-216 (226)
275 PF07693 KAP_NTPase: KAP famil 94.9 0.99 2.2E-05 49.8 17.2 41 160-200 2-45 (325)
276 cd03115 SRP The signal recogni 94.9 0.099 2.1E-06 51.8 8.3 24 177-200 2-25 (173)
277 PF01695 IstB_IS21: IstB-like 94.9 0.049 1.1E-06 54.0 5.9 74 174-265 46-120 (178)
278 TIGR03499 FlhF flagellar biosy 94.9 0.11 2.3E-06 55.9 8.9 26 174-199 193-218 (282)
279 KOG2739 Leucine-rich acidic nu 94.9 0.018 4E-07 58.5 2.8 81 496-577 41-126 (260)
280 cd00561 CobA_CobO_BtuR ATP:cor 94.9 0.19 4.1E-06 48.3 9.6 111 176-290 3-139 (159)
281 cd03247 ABCC_cytochrome_bd The 94.8 0.18 3.9E-06 50.1 10.0 114 173-292 26-160 (178)
282 PLN03187 meiotic recombination 94.8 0.14 3.1E-06 56.1 9.7 60 173-233 124-187 (344)
283 COG0468 RecA RecA/RadA recombi 94.8 0.15 3.3E-06 53.8 9.5 90 173-264 58-152 (279)
284 TIGR02012 tigrfam_recA protein 94.8 0.073 1.6E-06 57.5 7.3 84 173-263 53-143 (321)
285 PRK10867 signal recognition pa 94.8 0.18 3.9E-06 57.1 10.7 25 174-198 99-123 (433)
286 PTZ00301 uridine kinase; Provi 94.8 0.032 6.9E-07 56.8 4.3 27 174-200 2-28 (210)
287 PF00006 ATP-synt_ab: ATP synt 94.7 0.14 3.1E-06 52.1 8.9 95 166-264 5-116 (215)
288 COG0572 Udk Uridine kinase [Nu 94.7 0.07 1.5E-06 53.6 6.4 27 174-200 7-33 (218)
289 PRK08233 hypothetical protein; 94.7 0.096 2.1E-06 52.3 7.6 26 175-200 3-28 (182)
290 cd03222 ABC_RNaseL_inhibitor T 94.7 0.32 6.9E-06 48.1 11.0 109 173-302 23-146 (177)
291 PF00485 PRK: Phosphoribulokin 94.7 0.12 2.7E-06 52.1 8.5 24 177-200 1-24 (194)
292 PRK06964 DNA polymerase III su 94.7 1.4 3.1E-05 48.4 17.0 87 252-348 131-225 (342)
293 TIGR00959 ffh signal recogniti 94.7 0.21 4.5E-06 56.5 10.8 25 174-198 98-122 (428)
294 cd03223 ABCD_peroxisomal_ALDP 94.7 0.35 7.6E-06 47.4 11.3 113 173-292 25-151 (166)
295 PF13306 LRR_5: Leucine rich r 94.6 0.09 2E-06 49.0 6.8 101 516-622 8-111 (129)
296 COG1223 Predicted ATPase (AAA+ 94.6 0.39 8.4E-06 48.8 11.2 164 154-341 121-318 (368)
297 PRK10733 hflB ATP-dependent me 94.6 0.4 8.6E-06 57.9 13.7 147 155-320 153-338 (644)
298 PRK07667 uridine kinase; Provi 94.6 0.064 1.4E-06 54.1 5.9 38 163-200 3-42 (193)
299 COG4088 Predicted nucleotide k 94.6 0.028 6.2E-07 54.8 3.1 25 176-200 2-26 (261)
300 PRK00889 adenylylsulfate kinas 94.5 0.11 2.3E-06 51.7 7.4 27 174-200 3-29 (175)
301 PRK09354 recA recombinase A; P 94.5 0.099 2.1E-06 57.1 7.6 84 173-263 58-148 (349)
302 cd02027 APSK Adenosine 5'-phos 94.5 0.11 2.5E-06 49.8 7.3 23 177-199 1-23 (149)
303 COG2884 FtsE Predicted ATPase 94.5 0.22 4.7E-06 48.4 8.9 54 240-293 142-201 (223)
304 cd00983 recA RecA is a bacter 94.5 0.084 1.8E-06 57.1 6.9 84 173-263 53-143 (325)
305 PRK06547 hypothetical protein; 94.5 0.048 1E-06 53.6 4.7 34 166-199 6-39 (172)
306 COG1121 ZnuC ABC-type Mn/Zn tr 94.5 0.13 2.8E-06 53.2 7.9 129 173-301 28-212 (254)
307 COG1618 Predicted nucleotide k 94.5 0.038 8.3E-07 51.9 3.7 25 176-200 6-30 (179)
308 KOG0739 AAA+-type ATPase [Post 94.5 0.51 1.1E-05 48.9 11.9 176 154-352 133-348 (439)
309 PLN00020 ribulose bisphosphate 94.5 0.099 2.1E-06 56.6 7.3 28 173-200 146-173 (413)
310 COG0542 clpA ATP-binding subun 94.5 0.26 5.7E-06 59.0 11.4 153 153-317 169-346 (786)
311 PRK08699 DNA polymerase III su 94.5 0.48 1E-05 51.9 12.8 83 252-344 112-202 (325)
312 cd03230 ABC_DR_subfamily_A Thi 94.5 0.29 6.2E-06 48.4 10.3 117 173-301 24-168 (173)
313 COG1102 Cmk Cytidylate kinase 94.4 0.077 1.7E-06 49.9 5.5 46 177-235 2-47 (179)
314 KOG0734 AAA+-type ATPase conta 94.4 0.13 2.8E-06 57.4 8.0 91 154-264 304-407 (752)
315 KOG0729 26S proteasome regulat 94.4 0.28 6E-06 49.8 9.6 90 154-263 177-280 (435)
316 PF13604 AAA_30: AAA domain; P 94.3 0.19 4.1E-06 50.8 8.8 35 166-200 9-43 (196)
317 PF00560 LRR_1: Leucine Rich R 94.3 0.023 5E-07 34.4 1.2 21 592-612 1-21 (22)
318 PF00560 LRR_1: Leucine Rich R 94.3 0.015 3.2E-07 35.3 0.3 18 546-563 2-19 (22)
319 KOG0743 AAA+-type ATPase [Post 94.3 2.3 4.9E-05 47.4 17.1 71 280-355 338-417 (457)
320 PRK10463 hydrogenase nickel in 94.3 0.47 1E-05 50.4 11.6 36 165-200 94-129 (290)
321 COG2607 Predicted ATPase (AAA+ 94.2 0.25 5.5E-06 49.7 9.0 49 152-200 58-110 (287)
322 cd03221 ABCF_EF-3 ABCF_EF-3 E 94.2 0.33 7.1E-06 46.3 9.8 101 173-292 24-130 (144)
323 PF14532 Sigma54_activ_2: Sigm 94.2 0.098 2.1E-06 49.6 6.0 42 157-198 1-44 (138)
324 PRK08972 fliI flagellum-specif 94.2 0.23 5E-06 55.8 9.6 88 173-264 160-263 (444)
325 PF13238 AAA_18: AAA domain; P 94.1 0.036 7.8E-07 51.6 2.9 21 178-198 1-21 (129)
326 PRK06217 hypothetical protein; 94.1 0.19 4.1E-06 50.3 8.2 24 177-200 3-26 (183)
327 COG1126 GlnQ ABC-type polar am 94.1 0.41 8.8E-06 47.7 10.0 24 173-196 26-49 (240)
328 TIGR00390 hslU ATP-dependent p 94.1 0.13 2.9E-06 57.0 7.5 74 155-230 13-104 (441)
329 KOG1514 Origin recognition com 94.1 2.1 4.4E-05 50.1 17.0 160 155-318 397-590 (767)
330 PTZ00088 adenylate kinase 1; P 94.1 0.061 1.3E-06 55.6 4.6 23 178-200 9-31 (229)
331 PRK12726 flagellar biosynthesi 94.0 0.49 1.1E-05 51.9 11.5 88 174-264 205-296 (407)
332 KOG0728 26S proteasome regulat 94.0 1.8 3.8E-05 43.8 14.2 189 158-367 151-387 (404)
333 cd03246 ABCC_Protease_Secretio 94.0 0.33 7.1E-06 48.0 9.5 113 173-292 26-159 (173)
334 PRK06002 fliI flagellum-specif 93.9 0.25 5.3E-06 55.8 9.4 89 173-264 163-265 (450)
335 cd03269 ABC_putative_ATPase Th 93.9 0.47 1E-05 48.6 10.8 24 173-196 24-47 (210)
336 TIGR00064 ftsY signal recognit 93.8 0.3 6.5E-06 52.1 9.4 88 173-263 70-164 (272)
337 cd03228 ABCC_MRP_Like The MRP 93.8 0.34 7.3E-06 47.8 9.2 113 173-292 26-158 (171)
338 TIGR02236 recomb_radA DNA repa 93.8 0.33 7.1E-06 53.2 10.1 58 173-231 93-154 (310)
339 PRK04040 adenylate kinase; Pro 93.8 0.16 3.4E-06 50.9 6.9 25 176-200 3-27 (188)
340 COG0194 Gmk Guanylate kinase [ 93.8 0.17 3.6E-06 49.2 6.6 24 175-198 4-27 (191)
341 cd03237 ABC_RNaseL_inhibitor_d 93.8 0.57 1.2E-05 49.3 11.4 128 174-301 24-189 (246)
342 KOG3864 Uncharacterized conser 93.8 0.019 4.2E-07 56.0 0.3 64 819-884 125-188 (221)
343 TIGR02238 recomb_DMC1 meiotic 93.8 0.41 8.8E-06 52.1 10.5 60 173-233 94-157 (313)
344 PRK08927 fliI flagellum-specif 93.8 0.32 7E-06 54.8 9.9 88 173-264 156-259 (442)
345 PF07728 AAA_5: AAA domain (dy 93.8 0.12 2.7E-06 48.9 5.8 75 178-264 2-76 (139)
346 PLN03186 DNA repair protein RA 93.8 0.4 8.7E-06 52.7 10.4 60 173-233 121-184 (342)
347 PRK12597 F0F1 ATP synthase sub 93.8 0.24 5.2E-06 56.3 8.9 91 173-264 141-248 (461)
348 TIGR00554 panK_bact pantothena 93.8 0.28 6E-06 52.5 9.0 27 173-199 60-86 (290)
349 PF05659 RPW8: Arabidopsis bro 93.8 0.74 1.6E-05 43.7 10.8 108 2-127 3-110 (147)
350 cd02019 NK Nucleoside/nucleoti 93.7 0.053 1.2E-06 44.2 2.7 22 177-198 1-22 (69)
351 PRK12678 transcription termina 93.7 0.16 3.5E-06 58.1 7.3 98 166-264 406-514 (672)
352 KOG1532 GTPase XAB1, interacts 93.7 0.32 6.9E-06 49.8 8.6 28 173-200 17-44 (366)
353 COG0464 SpoVK ATPases of the A 93.7 1.4 2.9E-05 52.0 15.5 128 174-320 275-426 (494)
354 TIGR00235 udk uridine kinase. 93.7 0.055 1.2E-06 55.4 3.4 28 173-200 4-31 (207)
355 PRK05480 uridine/cytidine kina 93.6 0.057 1.2E-06 55.4 3.5 27 173-199 4-30 (209)
356 cd03265 ABC_DrrA DrrA is the A 93.6 0.64 1.4E-05 48.0 11.4 24 173-196 24-47 (220)
357 TIGR03574 selen_PSTK L-seryl-t 93.6 0.14 3.1E-06 54.0 6.6 24 177-200 1-24 (249)
358 PF03205 MobB: Molybdopterin g 93.6 0.11 2.4E-06 49.1 5.1 38 176-215 1-39 (140)
359 COG0563 Adk Adenylate kinase a 93.6 0.13 2.9E-06 50.8 5.7 23 177-199 2-24 (178)
360 PTZ00035 Rad51 protein; Provis 93.5 0.62 1.3E-05 51.3 11.5 59 173-232 116-178 (337)
361 PRK11034 clpA ATP-dependent Cl 93.5 0.14 3E-06 62.4 7.0 47 154-200 458-513 (758)
362 KOG0733 Nuclear AAA ATPase (VC 93.5 1.7 3.6E-05 49.9 14.6 167 155-342 512-718 (802)
363 TIGR01069 mutS2 MutS2 family p 93.5 0.046 1E-06 66.9 3.0 111 252-371 401-523 (771)
364 cd03285 ABC_MSH2_euk MutS2 hom 93.5 0.098 2.1E-06 54.0 5.0 168 174-354 29-219 (222)
365 cd03266 ABC_NatA_sodium_export 93.5 0.55 1.2E-05 48.5 10.6 24 173-196 29-52 (218)
366 TIGR02858 spore_III_AA stage I 93.5 0.55 1.2E-05 49.8 10.6 124 163-291 98-231 (270)
367 PRK12724 flagellar biosynthesi 93.5 0.23 4.9E-06 55.4 7.9 22 175-196 223-244 (432)
368 KOG0744 AAA+-type ATPase [Post 93.4 0.13 2.7E-06 53.9 5.4 82 174-264 176-261 (423)
369 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 93.4 0.49 1.1E-05 49.1 10.1 24 173-196 46-69 (224)
370 PF12775 AAA_7: P-loop contain 93.4 0.089 1.9E-06 56.0 4.6 87 164-263 23-110 (272)
371 PRK00279 adk adenylate kinase; 93.4 0.28 6.2E-06 50.5 8.3 24 177-200 2-25 (215)
372 PRK03846 adenylylsulfate kinas 93.4 0.21 4.5E-06 50.7 7.1 27 173-199 22-48 (198)
373 PRK13975 thymidylate kinase; P 93.4 0.23 4.9E-06 50.3 7.4 25 176-200 3-27 (196)
374 cd02025 PanK Pantothenate kina 93.4 0.29 6.3E-06 50.4 8.2 24 177-200 1-24 (220)
375 cd00267 ABC_ATPase ABC (ATP-bi 93.3 0.36 7.8E-06 46.8 8.4 113 173-293 23-144 (157)
376 PRK05201 hslU ATP-dependent pr 93.3 0.2 4.3E-06 55.7 7.0 75 154-230 15-107 (443)
377 KOG0735 AAA+-type ATPase [Post 93.3 0.17 3.8E-06 58.4 6.7 73 174-263 430-504 (952)
378 PF08433 KTI12: Chromatin asso 93.2 0.14 3E-06 54.4 5.6 25 176-200 2-26 (270)
379 PRK12723 flagellar biosynthesi 93.2 0.71 1.5E-05 51.6 11.4 87 174-263 173-264 (388)
380 TIGR02239 recomb_RAD51 DNA rep 93.2 0.54 1.2E-05 51.3 10.2 59 173-232 94-156 (316)
381 TIGR01313 therm_gnt_kin carboh 93.1 0.23 5E-06 48.5 6.8 22 178-199 1-22 (163)
382 PRK14974 cell division protein 93.1 0.67 1.4E-05 50.8 10.8 57 174-233 139-197 (336)
383 PRK00625 shikimate kinase; Pro 93.1 0.072 1.6E-06 52.4 3.1 24 177-200 2-25 (173)
384 PRK08149 ATP synthase SpaL; Va 93.1 0.41 8.9E-06 53.9 9.4 88 173-264 149-252 (428)
385 COG1120 FepC ABC-type cobalami 93.1 0.35 7.7E-06 50.3 8.2 130 173-302 26-213 (258)
386 cd00544 CobU Adenosylcobinamid 93.1 0.33 7E-06 47.6 7.6 80 177-262 1-82 (169)
387 PRK11248 tauB taurine transpor 93.1 0.77 1.7E-05 48.6 11.1 24 173-196 25-48 (255)
388 PRK05342 clpX ATP-dependent pr 93.1 0.24 5.2E-06 56.0 7.6 47 154-200 71-133 (412)
389 PRK06067 flagellar accessory p 93.1 0.47 1E-05 49.6 9.4 85 173-263 23-130 (234)
390 KOG0738 AAA+-type ATPase [Post 93.1 0.65 1.4E-05 50.1 10.1 47 154-200 212-270 (491)
391 PRK03839 putative kinase; Prov 93.0 0.074 1.6E-06 53.1 3.1 24 177-200 2-25 (180)
392 TIGR00150 HI0065_YjeE ATPase, 93.0 0.16 3.5E-06 47.2 5.1 40 161-200 6-47 (133)
393 TIGR03740 galliderm_ABC gallid 93.0 0.88 1.9E-05 47.1 11.3 23 173-195 24-46 (223)
394 TIGR03877 thermo_KaiC_1 KaiC d 93.0 0.65 1.4E-05 48.6 10.3 49 173-226 19-68 (237)
395 PRK05022 anaerobic nitric oxid 93.0 1.4 3E-05 52.0 14.1 61 153-215 186-248 (509)
396 cd01136 ATPase_flagellum-secre 93.0 0.62 1.4E-05 50.6 10.3 88 173-264 67-170 (326)
397 TIGR01360 aden_kin_iso1 adenyl 93.0 0.084 1.8E-06 53.0 3.5 26 174-199 2-27 (188)
398 PRK06762 hypothetical protein; 93.0 0.076 1.7E-06 52.2 3.1 25 175-199 2-26 (166)
399 COG0125 Tmk Thymidylate kinase 93.0 0.39 8.4E-06 48.6 8.2 49 175-225 3-51 (208)
400 COG3640 CooC CO dehydrogenase 93.0 0.18 3.8E-06 50.8 5.4 49 177-235 2-52 (255)
401 COG1428 Deoxynucleoside kinase 92.9 0.079 1.7E-06 52.5 3.0 26 175-200 4-29 (216)
402 TIGR01420 pilT_fam pilus retra 92.9 0.24 5.1E-06 55.0 7.2 108 174-287 121-228 (343)
403 cd01132 F1_ATPase_alpha F1 ATP 92.9 0.38 8.3E-06 50.5 8.1 95 173-271 67-180 (274)
404 TIGR01425 SRP54_euk signal rec 92.9 0.71 1.5E-05 52.0 10.8 26 174-199 99-124 (429)
405 PRK13543 cytochrome c biogenes 92.9 0.65 1.4E-05 47.8 9.9 24 173-196 35-58 (214)
406 PRK15429 formate hydrogenlyase 92.9 1.5 3.4E-05 53.7 14.8 45 154-198 376-422 (686)
407 PRK00131 aroK shikimate kinase 92.8 0.095 2.1E-06 51.9 3.6 27 174-200 3-29 (175)
408 COG5238 RNA1 Ran GTPase-activa 92.8 0.15 3.3E-06 52.0 4.8 37 586-622 87-128 (388)
409 PRK11247 ssuB aliphatic sulfon 92.8 1 2.2E-05 47.7 11.5 24 173-196 36-59 (257)
410 TIGR03498 FliI_clade3 flagella 92.8 0.4 8.7E-06 54.0 8.7 88 173-264 138-241 (418)
411 COG5238 RNA1 Ran GTPase-activa 92.7 0.31 6.7E-06 49.8 6.8 119 563-693 88-225 (388)
412 COG0467 RAD55 RecA-superfamily 92.7 0.24 5.1E-06 52.8 6.6 51 173-228 21-72 (260)
413 cd01121 Sms Sms (bacterial rad 92.7 0.24 5.1E-06 55.2 6.7 86 174-264 81-169 (372)
414 PRK09280 F0F1 ATP synthase sub 92.6 0.55 1.2E-05 53.3 9.5 91 173-264 142-249 (463)
415 TIGR03305 alt_F1F0_F1_bet alte 92.6 0.37 8.1E-06 54.4 8.2 92 173-265 136-244 (449)
416 COG0541 Ffh Signal recognition 92.6 7.4 0.00016 43.3 17.6 27 174-200 99-125 (451)
417 PF07726 AAA_3: ATPase family 92.6 0.07 1.5E-06 48.7 2.0 28 178-207 2-29 (131)
418 cd02028 UMPK_like Uridine mono 92.6 0.11 2.4E-06 51.6 3.6 24 177-200 1-24 (179)
419 PRK13531 regulatory ATPase Rav 92.6 0.18 3.9E-06 57.2 5.6 43 156-200 22-64 (498)
420 PRK14721 flhF flagellar biosyn 92.6 0.66 1.4E-05 52.3 10.1 22 174-195 190-211 (420)
421 PRK08533 flagellar accessory p 92.6 0.65 1.4E-05 48.3 9.4 49 173-226 22-71 (230)
422 COG2274 SunT ABC-type bacterio 92.5 5.3 0.00011 48.6 18.2 50 243-292 617-672 (709)
423 PF06309 Torsin: Torsin; Inte 92.5 0.18 4E-06 45.8 4.6 43 155-197 26-75 (127)
424 PRK09544 znuC high-affinity zi 92.5 0.91 2E-05 47.9 10.7 25 173-197 28-52 (251)
425 PF00625 Guanylate_kin: Guanyl 92.5 0.15 3.3E-06 50.9 4.6 36 175-212 2-37 (183)
426 TIGR00764 lon_rel lon-related 92.5 0.33 7.2E-06 57.9 8.0 77 152-232 16-92 (608)
427 COG1124 DppF ABC-type dipeptid 92.4 0.17 3.7E-06 51.2 4.6 24 173-196 31-54 (252)
428 KOG3347 Predicted nucleotide k 92.4 0.095 2.1E-06 48.5 2.5 35 175-216 7-41 (176)
429 cd02023 UMPK Uridine monophosp 92.4 0.082 1.8E-06 53.7 2.4 23 177-199 1-23 (198)
430 PF00154 RecA: recA bacterial 92.3 0.33 7.1E-06 52.5 7.0 85 173-264 51-142 (322)
431 cd00071 GMPK Guanosine monopho 92.3 0.11 2.4E-06 49.1 3.1 24 177-200 1-24 (137)
432 COG4619 ABC-type uncharacteriz 92.3 1.3 2.8E-05 42.2 9.8 27 174-200 28-54 (223)
433 PRK14723 flhF flagellar biosyn 92.3 0.94 2E-05 54.7 11.3 86 175-263 185-273 (767)
434 TIGR03881 KaiC_arch_4 KaiC dom 92.3 0.85 1.8E-05 47.4 10.0 48 173-225 18-66 (229)
435 TIGR01188 drrA daunorubicin re 92.2 1.3 2.7E-05 48.4 11.7 24 173-196 17-40 (302)
436 PRK04182 cytidylate kinase; Pr 92.2 0.46 1E-05 47.2 7.7 24 177-200 2-25 (180)
437 PRK14532 adenylate kinase; Pro 92.2 0.46 1E-05 47.7 7.6 23 178-200 3-25 (188)
438 PRK06995 flhF flagellar biosyn 92.2 0.89 1.9E-05 52.1 10.6 24 175-198 256-279 (484)
439 cd01135 V_A-ATPase_B V/A-type 92.1 0.67 1.5E-05 48.7 8.8 93 173-265 67-178 (276)
440 PRK13947 shikimate kinase; Pro 92.1 0.11 2.4E-06 51.3 3.0 24 177-200 3-26 (171)
441 TIGR02030 BchI-ChlI magnesium 92.1 0.21 4.5E-06 54.8 5.3 45 153-197 3-47 (337)
442 TIGR01039 atpD ATP synthase, F 92.1 0.63 1.4E-05 52.6 9.1 92 173-265 141-249 (461)
443 TIGR03575 selen_PSTK_euk L-ser 92.1 0.48 1E-05 51.8 8.0 23 178-200 2-24 (340)
444 TIGR01287 nifH nitrogenase iro 92.1 0.14 3.1E-06 55.0 4.0 21 176-196 1-21 (275)
445 PRK10751 molybdopterin-guanine 92.1 0.13 2.8E-06 50.3 3.2 27 174-200 5-31 (173)
446 cd02024 NRK1 Nicotinamide ribo 92.1 0.11 2.3E-06 51.8 2.7 23 177-199 1-23 (187)
447 PLN02924 thymidylate kinase 92.0 0.65 1.4E-05 47.7 8.5 54 174-228 15-68 (220)
448 PRK13765 ATP-dependent proteas 92.0 0.43 9.3E-06 56.9 8.1 78 152-233 29-106 (637)
449 PF08298 AAA_PrkA: PrkA AAA do 92.0 0.25 5.4E-06 53.4 5.5 47 154-200 61-113 (358)
450 COG4133 CcmA ABC-type transpor 91.9 1.6 3.4E-05 42.7 10.2 52 240-291 135-192 (209)
451 cd01129 PulE-GspE PulE/GspE Th 91.9 0.44 9.5E-06 50.6 7.4 104 157-269 62-165 (264)
452 COG1419 FlhF Flagellar GTP-bin 91.9 1.5 3.2E-05 48.4 11.4 99 162-263 186-291 (407)
453 cd02020 CMPK Cytidine monophos 91.9 0.12 2.6E-06 49.4 2.9 24 177-200 1-24 (147)
454 PF00910 RNA_helicase: RNA hel 91.9 0.1 2.3E-06 46.8 2.3 23 178-200 1-23 (107)
455 PRK05439 pantothenate kinase; 91.9 0.96 2.1E-05 48.8 9.9 28 173-200 84-111 (311)
456 KOG1051 Chaperone HSP104 and r 91.9 0.56 1.2E-05 57.1 8.9 103 154-266 562-673 (898)
457 PRK05973 replicative DNA helic 91.9 0.85 1.8E-05 47.2 9.1 49 173-226 62-111 (237)
458 CHL00060 atpB ATP synthase CF1 91.8 0.58 1.3E-05 53.3 8.5 91 173-265 159-274 (494)
459 PF06745 KaiC: KaiC; InterPro 91.8 0.3 6.5E-06 50.7 5.9 85 173-262 17-124 (226)
460 PF13481 AAA_25: AAA domain; P 91.8 0.61 1.3E-05 47.0 8.1 52 174-227 31-90 (193)
461 cd00227 CPT Chloramphenicol (C 91.8 0.16 3.6E-06 50.3 3.8 26 175-200 2-27 (175)
462 COG0237 CoaE Dephospho-CoA kin 91.8 0.3 6.6E-06 49.1 5.6 23 175-197 2-24 (201)
463 TIGR01351 adk adenylate kinase 91.8 0.4 8.7E-06 49.1 6.8 22 178-199 2-23 (210)
464 TIGR03496 FliI_clade1 flagella 91.8 0.73 1.6E-05 51.9 9.2 88 173-264 135-238 (411)
465 PF13504 LRR_7: Leucine rich r 91.8 0.12 2.6E-06 29.0 1.5 16 592-607 2-17 (17)
466 PRK10416 signal recognition pa 91.7 0.84 1.8E-05 49.8 9.5 27 174-200 113-139 (318)
467 KOG0727 26S proteasome regulat 91.7 3.5 7.6E-05 41.8 12.7 50 154-205 155-217 (408)
468 PRK06793 fliI flagellum-specif 91.7 0.82 1.8E-05 51.6 9.5 90 173-265 154-258 (432)
469 PRK13949 shikimate kinase; Pro 91.7 0.14 3E-06 50.3 3.2 25 176-200 2-26 (169)
470 PRK07594 type III secretion sy 91.7 0.82 1.8E-05 51.6 9.5 89 173-265 153-257 (433)
471 PRK06936 type III secretion sy 91.7 0.86 1.9E-05 51.4 9.6 89 173-265 160-264 (439)
472 PRK09099 type III secretion sy 91.7 0.77 1.7E-05 52.0 9.3 90 173-265 161-265 (441)
473 PRK05922 type III secretion sy 91.7 1.1 2.4E-05 50.6 10.4 89 173-265 155-259 (434)
474 PRK13634 cbiO cobalt transport 91.6 1.4 3E-05 47.7 11.0 60 242-301 152-219 (290)
475 KOG0473 Leucine-rich repeat pr 91.6 0.011 2.3E-07 58.7 -4.7 87 516-604 38-124 (326)
476 PRK14531 adenylate kinase; Pro 91.6 0.41 8.9E-06 47.8 6.4 25 176-200 3-27 (183)
477 TIGR02322 phosphon_PhnN phosph 91.6 0.13 2.9E-06 51.2 2.9 24 176-199 2-25 (179)
478 PRK15064 ABC transporter ATP-b 91.6 1.3 2.7E-05 52.7 11.6 26 173-198 25-50 (530)
479 TIGR00041 DTMP_kinase thymidyl 91.6 0.84 1.8E-05 46.1 8.8 25 176-200 4-28 (195)
480 TIGR02173 cyt_kin_arch cytidyl 91.6 0.6 1.3E-05 45.9 7.6 24 177-200 2-25 (171)
481 cd00820 PEPCK_HprK Phosphoenol 91.5 0.15 3.3E-06 45.2 2.8 23 174-196 14-36 (107)
482 PTZ00185 ATPase alpha subunit; 91.5 1 2.2E-05 51.3 9.8 92 173-264 187-300 (574)
483 cd01134 V_A-ATPase_A V/A-type 91.5 1.7 3.6E-05 47.3 11.0 95 166-264 147-265 (369)
484 PF13504 LRR_7: Leucine rich r 91.5 0.12 2.6E-06 29.0 1.4 17 926-943 1-17 (17)
485 TIGR01040 V-ATPase_V1_B V-type 91.5 0.76 1.6E-05 51.8 8.8 91 173-264 139-258 (466)
486 COG3638 ABC-type phosphate/pho 91.4 0.52 1.1E-05 47.6 6.6 28 173-200 28-55 (258)
487 TIGR00176 mobB molybdopterin-g 91.4 0.23 4.9E-06 48.0 4.1 36 177-213 1-36 (155)
488 PRK07721 fliI flagellum-specif 91.3 1 2.2E-05 51.3 9.8 89 173-264 156-259 (438)
489 PRK00409 recombination and DNA 91.3 0.16 3.5E-06 62.4 3.7 175 173-370 325-527 (782)
490 TIGR00455 apsK adenylylsulfate 91.3 0.62 1.3E-05 46.6 7.4 27 173-199 16-42 (184)
491 COG4107 PhnK ABC-type phosphon 91.3 1.8 4E-05 41.3 9.7 25 174-198 31-55 (258)
492 TIGR02868 CydC thiol reductant 91.3 0.76 1.6E-05 54.7 9.4 23 173-195 359-381 (529)
493 COG1936 Predicted nucleotide k 91.3 0.15 3.3E-06 48.8 2.6 20 177-196 2-21 (180)
494 cd03369 ABCC_NFT1 Domain 2 of 91.2 2.6 5.5E-05 43.0 12.1 23 173-195 32-54 (207)
495 PRK04328 hypothetical protein; 91.1 0.84 1.8E-05 48.1 8.5 40 173-215 21-61 (249)
496 TIGR00708 cobA cob(I)alamin ad 91.1 1.8 4E-05 42.2 10.0 111 175-289 5-140 (173)
497 CHL00081 chlI Mg-protoporyphyr 91.1 0.23 5E-06 54.5 4.3 47 152-198 15-61 (350)
498 cd01672 TMPK Thymidine monopho 91.1 0.42 9E-06 48.4 6.1 25 176-200 1-25 (200)
499 COG1122 CbiO ABC-type cobalt t 91.1 0.97 2.1E-05 46.8 8.7 26 173-198 28-53 (235)
500 COG2019 AdkA Archaeal adenylat 91.1 0.18 3.9E-06 47.8 2.9 25 175-199 4-28 (189)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.8e-92 Score=843.90 Aligned_cols=597 Identities=27% Similarity=0.432 Sum_probs=498.6
Q ss_pred hhhhhhhhchhhhHHHHhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCchhHHHHHHHHHHHHHHHH
Q 001999 12 SVLTPAVEGGSGIFHYLKLNCGYVKHLKRNFVELEKELTFLCDCETEVNEELNSNKTKKKMTRGCKLWLDSVKEVRDEFE 91 (984)
Q Consensus 12 ~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~a~~~~~~~~~v~~wl~~l~~~~~d~e 91 (984)
+.++..++++ ++++.+++..+.+.++.+..|+++|..|+.++.|++++- .....+..|.+.+++++|++|
T Consensus 3 ~~~s~~~~~~---~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~-------~~~~~~~~~~e~~~~~~~~~e 72 (889)
T KOG4658|consen 3 ACVSFGVEKL---DQLLNRESECLDGKDNYILELKENLKALQSALEDLDAKR-------DDLERRVNWEEDVGDLVYLAE 72 (889)
T ss_pred eEEEEehhhH---HHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhc-------chHHHHHHHHHHHHHHHHHHH
Confidence 3444444444 477888899999999999999999999999999988542 245668899999999999999
Q ss_pred HHHHhhhhhC------C------------ccCC--ccCcccccchhHHHHHHHHHHHHHHhhhccc-cccC-CCCCCCCc
Q 001999 92 ILRSQYQQTG------G------------CLCG--KRPIHSQLKLGKQIVEMVVKIRSLRTEIGQI-IKME-PKPQDPFV 149 (984)
Q Consensus 92 d~ld~~~~~~------~------------~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~ 149 (984)
|.++.+..+. . |+.. ......-+.+++++.+.+++++....+ +.| .+.. ..+++...
T Consensus 73 ~~~~~~~v~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~-~~~~~~~~~~~~~~~~e 151 (889)
T KOG4658|consen 73 DIIWLFLVEEIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSK-GVFEVVGESLDPREKVE 151 (889)
T ss_pred HHHHHHHHHHHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccc-cceecccccccchhhcc
Confidence 9999987650 0 1111 122223345566666666666665544 334 2221 11222222
Q ss_pred ccCCCCC--CchHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHH-hhhhcccCCCCCeEEEEEeCCCCCHHHHHHHH
Q 001999 150 SRHASKF--PSHKEYVETLEKHLSSGGLKKICICGPLGVGKTTIMEN-SHDSVGESGRFDIIFWVNVNTDGNISDIQEII 226 (984)
Q Consensus 150 ~~~~~~~--vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~-~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i 226 (984)
.++.... ||.+..++++.+.|.+++..+++|+||||+||||||++ +.+......+||.++||+||+.|+...++++|
T Consensus 152 ~~~~~~~~~VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~I 231 (889)
T KOG4658|consen 152 TRPIQSESDVGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTI 231 (889)
T ss_pred cCCCCccccccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHH
Confidence 2222222 99999999999999998889999999999999999999 33332234999999999999999999999999
Q ss_pred HHHhccCccccch---HHHHHHHHHHHcCCcEEEEEECCCCccchhhhc--cccCCCCcEEEEEcCCccccc---cCCce
Q 001999 227 LERLKVNAKELDN---AQRADNISKELKDKRYVLFLDGVSSEINFKEIG--IHDDHGRGKVVFACRSREFCW---QADDV 298 (984)
Q Consensus 227 ~~~l~~~~~~~~~---~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~--~~~~~~gs~ilvTTR~~~v~~---~~~~~ 298 (984)
++.++.....+.+ ++++..|.+.|++|||+|||||||+..+|+.++ +|...+||||++|||++.||. ++...
T Consensus 232 l~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~ 311 (889)
T KOG4658|consen 232 LERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYP 311 (889)
T ss_pred HHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCcc
Confidence 9999876655544 688999999999999999999999999999985 447778999999999999998 66789
Q ss_pred EEccCCChHHHHHHHHHHhCCC-CCCCcchHHHHHHHHHHcCCCchHHHHHHHHhhcCccHHHHHHHHHHhhcCCccccc
Q 001999 299 IHVERLSPREAKKLFWEVVGVN-LKKNPDIEQEADSIVEECGGMPYMLKLIGKELVNQSEVAIWRATVDDLRSTSSEEKK 377 (984)
Q Consensus 299 ~~l~~L~~~~~~~Lf~~~~~~~-~~~~~~l~~~~~~I~~~c~GlPlai~~~~~~l~~~~~~~~w~~~l~~l~~~~~~~~~ 377 (984)
+++.+|+.+|||+||++.++.. ...++.++++|++|+++|+|+|||++++|+.|+.|.+..+|+++.+.+......+.+
T Consensus 312 ~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~ 391 (889)
T KOG4658|consen 312 IEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFS 391 (889)
T ss_pred ccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCC
Confidence 9999999999999999999987 556677999999999999999999999999999999999999999998877443444
Q ss_pred c-HHHHHHHHHHHHhcChHHHHHHHhhhcccCCCCccCHHHHHHHHhhcCCCCccCcccchhhHHHHHHHHHhhcccccc
Q 001999 378 E-LEEVYRFFKLVYKNLSSVQQHCLLGWAIFPTGLEISQDYIIDCWAAQKFLPRFGKIGDARDTGCLILDKFEKKSLLQK 456 (984)
Q Consensus 378 ~-~~~i~~~l~~sy~~L~~~~k~cfl~~s~fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~ 456 (984)
+ .+.++++|++||++||+++|.||+|||+||+||.|+++.|+.+||||||+.+...+..++++|+.|+.+|++++|++.
T Consensus 392 ~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~ 471 (889)
T KOG4658|consen 392 GMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIE 471 (889)
T ss_pred chhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhh
Confidence 4 445999999999999988999999999999999999999999999999999977788999999999999999999998
Q ss_pred cc---cccccchHHHHHHHHHHHhh-----hcCCceeeecC----CCCChhhhccCeEeeeccCCCCCCCCCCCcCceeE
Q 001999 457 QS---KEKRYKMIEFFQRAALRIAN-----ERDGGILVKEE----KHISEEEWKDTKKLSLFGFPSSTLPDMPNCCEILT 524 (984)
Q Consensus 457 ~~---~~~~~~mHdlv~~~a~~~~~-----~~~~~~~~~~~----~~~~~~~~~~~r~l~l~~~~~~~l~~~~~~~~L~~ 524 (984)
.. +..+|+|||+|||+|.++|+ +++ .++..+ +.+....|..+|++++.+|.+..++....+++|++
T Consensus 472 ~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~--~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~t 549 (889)
T KOG4658|consen 472 ERDEGRKETVKMHDVVREMALWIASDFGKQEEN--QIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRT 549 (889)
T ss_pred cccccceeEEEeeHHHHHHHHHHhccccccccc--eEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccce
Confidence 76 35799999999999999999 443 344332 35566778899999999999999988899999999
Q ss_pred EEecCcc--cCCCcchHhhcCCCccEEeccCC-CCccCCcchhcccccCeEecCCCcccccCchhhhccCCCcEEEecCc
Q 001999 525 LIVEGRR--LEKLPMSFFEYMCHLQLLDLHDT-SIRCLPPSISRLINLNALFLRSCSLLFQLPKEIRYLQKLEILDVRHT 601 (984)
Q Consensus 525 L~l~~~~--l~~l~~~~~~~l~~Lr~L~L~~~-~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~~ 601 (984)
|.+..|. +..++..+|..+++||||||++| .+..+|.+|+.|.|||||++++ +.+..+|.++++|+.|.+|++..+
T Consensus 550 Lll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L~~Lnl~~~ 628 (889)
T KOG4658|consen 550 LLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGISHLPSGLGNLKKLIYLNLEVT 628 (889)
T ss_pred EEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC-CCccccchHHHHHHhhheeccccc
Confidence 9999886 78889999999999999999988 7889999999999999999998 678999999999999999999988
Q ss_pred c-ccccchhhhccCCCCeeecc
Q 001999 602 R-IQCLPSEIGQLIKLKCLRVS 622 (984)
Q Consensus 602 ~-l~~lp~~~~~L~~L~~L~l~ 622 (984)
. +..+|.....|++||+|.+.
T Consensus 629 ~~l~~~~~i~~~L~~Lr~L~l~ 650 (889)
T KOG4658|consen 629 GRLESIPGILLELQSLRVLRLP 650 (889)
T ss_pred cccccccchhhhcccccEEEee
Confidence 4 44555556668999999887
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=2.6e-63 Score=628.70 Aligned_cols=677 Identities=17% Similarity=0.230 Sum_probs=488.1
Q ss_pred CCCCCCchHHHHHHHHHHhc--cCCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEe---CCC----------
Q 001999 152 HASKFPSHKEYVETLEKHLS--SGGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNV---NTD---------- 216 (984)
Q Consensus 152 ~~~~~vgr~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~v---s~~---------- 216 (984)
+..++|||+..++++..+|. .+++++|+|+||||+||||||++++.++. .+|+..+|+.. +..
T Consensus 182 ~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~--~~F~g~vfv~~~~v~~~~~~~~~~~~~ 259 (1153)
T PLN03210 182 DFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLS--RQFQSSVFIDRAFISKSMEIYSSANPD 259 (1153)
T ss_pred ccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHh--hcCCeEEEeeccccccchhhccccccc
Confidence 45679999999999998875 36799999999999999999999988888 89998888742 111
Q ss_pred -CC-HHHHHHHHHHHhccCccccchHHHHHHHHHHHcCCcEEEEEECCCCccchhhhccc--cCCCCcEEEEEcCCcccc
Q 001999 217 -GN-ISDIQEIILERLKVNAKELDNAQRADNISKELKDKRYVLFLDGVSSEINFKEIGIH--DDHGRGKVVFACRSREFC 292 (984)
Q Consensus 217 -~~-~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~~~--~~~~gs~ilvTTR~~~v~ 292 (984)
++ ...++++++.++........ .....+++.++++|+||||||||+...|+.+... ..++||+||||||+..++
T Consensus 260 ~~~~~~~l~~~~l~~il~~~~~~~--~~~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl 337 (1153)
T PLN03210 260 DYNMKLHLQRAFLSEILDKKDIKI--YHLGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFL 337 (1153)
T ss_pred ccchhHHHHHHHHHHHhCCCCccc--CCHHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHH
Confidence 11 12344555554432211110 1124677889999999999999999888887432 447899999999999998
Q ss_pred c--cCCceEEccCCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCCchHHHHHHHHhhcCccHHHHHHHHHHhhc
Q 001999 293 W--QADDVIHVERLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGMPYMLKLIGKELVNQSEVAIWRATVDDLRS 370 (984)
Q Consensus 293 ~--~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~~~~~l~~~~~~~~w~~~l~~l~~ 370 (984)
. +....|+++.+++++||+||+++||......+++.+++++|+++|+|+|||++++|++|+.+ +..+|+.++++++.
T Consensus 338 ~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~~W~~~l~~L~~ 416 (1153)
T PLN03210 338 RAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKEDWMDMLPRLRN 416 (1153)
T ss_pred HhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHHh
Confidence 7 57789999999999999999999997754556789999999999999999999999999987 78999999999876
Q ss_pred CCccccccHHHHHHHHHHHHhcChHH-HHHHHhhhcccCCCCccCHHHHHHHHhhcCCCCccCcccchhhHHHHHHHHHh
Q 001999 371 TSSEEKKELEEVYRFFKLVYKNLSSV-QQHCLLGWAIFPTGLEISQDYIIDCWAAQKFLPRFGKIGDARDTGCLILDKFE 449 (984)
Q Consensus 371 ~~~~~~~~~~~i~~~l~~sy~~L~~~-~k~cfl~~s~fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~~~~~~~~~~~~L~ 449 (984)
... .+|..+|++||++|+++ .|.||+++|+|+.+..++ .+..|++.+.... +.-++.|+
T Consensus 417 ~~~------~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~-----------~~~l~~L~ 476 (1153)
T PLN03210 417 GLD------GKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV-----------NIGLKNLV 476 (1153)
T ss_pred Ccc------HHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCc-----------hhChHHHH
Confidence 543 57999999999999875 999999999999987653 4778888765532 12288999
Q ss_pred hcccccccccccccchHHHHHHHHHHHhhhcCC-----ceeeecCCC------------------------------CCh
Q 001999 450 KKSLLQKQSKEKRYKMIEFFQRAALRIANERDG-----GILVKEEKH------------------------------ISE 494 (984)
Q Consensus 450 ~~~ll~~~~~~~~~~mHdlv~~~a~~~~~~~~~-----~~~~~~~~~------------------------------~~~ 494 (984)
++||++... ..++|||++|+||+.+++++.. .+++...+. ...
T Consensus 477 ~ksLi~~~~--~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF 554 (1153)
T PLN03210 477 DKSLIHVRE--DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAF 554 (1153)
T ss_pred hcCCEEEcC--CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHH
Confidence 999998764 5799999999999999977531 233221100 001
Q ss_pred hhhccCeEeeeccCCCC-------CCCC-CCCc-CceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCCcchhc
Q 001999 495 EEWKDTKKLSLFGFPSS-------TLPD-MPNC-CEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLPPSISR 565 (984)
Q Consensus 495 ~~~~~~r~l~l~~~~~~-------~l~~-~~~~-~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~ 565 (984)
..+.+++.+.+..+... .+|. +..+ ++||.|.+.++.+..+|.. | .+.+|+.|+++++.+..+|..+..
T Consensus 555 ~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~-f-~~~~L~~L~L~~s~l~~L~~~~~~ 632 (1153)
T PLN03210 555 KGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSN-F-RPENLVKLQMQGSKLEKLWDGVHS 632 (1153)
T ss_pred hcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCc-C-CccCCcEEECcCcccccccccccc
Confidence 12233444444322111 1121 1222 3578888888888888876 3 467888999998888888888888
Q ss_pred ccccCeEecCCCcccccCchhhhccCCCcEEEecCc-cccccchhhhccCCCCeeecccccccCccccCCCCCCcccchh
Q 001999 566 LINLNALFLRSCSLLFQLPKEIRYLQKLEILDVRHT-RIQCLPSEIGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSN 644 (984)
Q Consensus 566 l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~~-~l~~lp~~~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~ 644 (984)
+++|++|+|++|..+..+|. ++.+++|++|++++| .+..+|..++++++|+.|+++ +|..+. .+|.+
T Consensus 633 l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~-----~c~~L~------~Lp~~ 700 (1153)
T PLN03210 633 LTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMS-----RCENLE------ILPTG 700 (1153)
T ss_pred CCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCC-----CCCCcC------ccCCc
Confidence 99999999988887888875 788889999999887 577888888899999999998 555555 56654
Q ss_pred hhhccccccceeeeecCCchhHHhhhhhhhHHHhhccCCCceEEEecCCcchhhhhhhcccccCCCCCCCCCCcceeEEE
Q 001999 645 IISKLCLLEELIIEVLDPSDRRWKQNVESIAGEIAALEQLTTLHFYFPTIKCFKTFINRRKSVNGNKSRHGDNFKSFNIV 724 (984)
Q Consensus 645 ~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 724 (984)
+ ++++|+.|.+.++... ...+ ....+|+.|+++.+....++....
T Consensus 701 -i-~l~sL~~L~Lsgc~~L--------~~~p---~~~~nL~~L~L~~n~i~~lP~~~~---------------------- 745 (1153)
T PLN03210 701 -I-NLKSLYRLNLSGCSRL--------KSFP---DISTNISWLDLDETAIEEFPSNLR---------------------- 745 (1153)
T ss_pred -C-CCCCCCEEeCCCCCCc--------cccc---cccCCcCeeecCCCcccccccccc----------------------
Confidence 2 6888888888764321 1111 124578888887665444332110
Q ss_pred ecccCccceeccccccccccccceEEc--------cCCCCchhHHHHHhhhccceeeccccccccccccccccccccCee
Q 001999 725 VGYPQSTSLLAGFDVSEWSAEKHLRFS--------AGVEEIPGEFLTILKQAYSFELIGSQYAVNLSNFGVDNLVRLQAC 796 (984)
Q Consensus 725 ~g~~~~~~~l~~~~~p~~~~L~~L~l~--------~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L 796 (984)
+ .+|..|.+. +.+..+++......++|+.|.+.++.....+|. .++++++|+.|
T Consensus 746 --------------l---~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~-si~~L~~L~~L 807 (1153)
T PLN03210 746 --------------L---ENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPS-SIQNLHKLEHL 807 (1153)
T ss_pred --------------c---cccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccCh-hhhCCCCCCEE
Confidence 0 112222222 011122222223345677777777777777766 47788899999
Q ss_pred EEcccCCceEEecCCCCCcccCCCcceeecccccccccccccccccCcccccceeeecccccccccCcHHHHhhcccccE
Q 001999 797 VIEDCNEMTSIIDGNHRGVVPFQGLNNLHIKNLPKLMHIWVGPIASGSLNSLRTLRVKICHSIKTLFSKEMVAQLNELQD 876 (984)
Q Consensus 797 ~l~~~~~l~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~l~~l~~L~~ 876 (984)
+|++|..++.++... .+++|+.|.+++|..+..++. ..++|+.|+++++ .++.+ +..+..+++|+.
T Consensus 808 ~Ls~C~~L~~LP~~~-----~L~sL~~L~Ls~c~~L~~~p~------~~~nL~~L~Ls~n-~i~~i--P~si~~l~~L~~ 873 (1153)
T PLN03210 808 EIENCINLETLPTGI-----NLESLESLDLSGCSRLRTFPD------ISTNISDLNLSRT-GIEEV--PWWIEKFSNLSF 873 (1153)
T ss_pred ECCCCCCcCeeCCCC-----CccccCEEECCCCCccccccc------cccccCEeECCCC-CCccC--hHHHhcCCCCCE
Confidence 999998888887543 368899999999888776522 3468888998887 78777 356788899999
Q ss_pred EeecccchhHHHhhcCcccccCCCCcccEeeccCCccccccCCCC------------ccCCCCcceEeecccccccc
Q 001999 877 LQVEDCQMIEEIVEAGTVLAIGEFPKLKTLELIDLPKLSTICNSL------------LLPWPSLETIKIKACNALKS 941 (984)
Q Consensus 877 L~l~~c~~l~~i~~~~~~~~~~~~~~L~~L~L~~c~~L~~i~~~~------------~~~l~sL~~L~i~~C~~L~~ 941 (984)
|++++|..++. ++.....+++|+.|++++|++|+.++... ...+|+...+.+.+|.+|..
T Consensus 874 L~L~~C~~L~~-----l~~~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~~ 945 (1153)
T PLN03210 874 LDMNGCNNLQR-----VSLNISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLDQ 945 (1153)
T ss_pred EECCCCCCcCc-----cCcccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCCc
Confidence 99999888764 34455678888888999998887654311 12344555666777776653
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=4.7e-43 Score=381.79 Aligned_cols=271 Identities=30% Similarity=0.521 Sum_probs=223.6
Q ss_pred hHHHHHHHHHHhcc--CCccEEEEEcCCCChHHHHHHHhhhh--cccCCCCCeEEEEEeCCCCCHHHHHHHHHHHhccCc
Q 001999 159 HKEYVETLEKHLSS--GGLKKICICGPLGVGKTTIMENSHDS--VGESGRFDIIFWVNVNTDGNISDIQEIILERLKVNA 234 (984)
Q Consensus 159 r~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~~~~~--~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~ 234 (984)
|+.++++|.++|.+ ++.++|+|+||||+||||||++++++ ++ .+|+.++||.++...+...+++.|+++++...
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~--~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~ 78 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIK--NRFDGVIWVSLSKNPSLEQLLEQILRQLGEPD 78 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHC--CCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccc--cccccccccccccccccccccccccccccccc
Confidence 78999999999998 78999999999999999999997777 66 99999999999999999999999999998874
Q ss_pred ccc----chHHHHHHHHHHHcCCcEEEEEECCCCccchhhhc--cccCCCCcEEEEEcCCccccc---cCCceEEccCCC
Q 001999 235 KEL----DNAQRADNISKELKDKRYVLFLDGVSSEINFKEIG--IHDDHGRGKVVFACRSREFCW---QADDVIHVERLS 305 (984)
Q Consensus 235 ~~~----~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~--~~~~~~gs~ilvTTR~~~v~~---~~~~~~~l~~L~ 305 (984)
... ..++....+++.|+++++||||||||+...|+.+. ++....|++||||||+..++. .....+++++|+
T Consensus 79 ~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~ 158 (287)
T PF00931_consen 79 SSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLS 158 (287)
T ss_dssp STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--
T ss_pred cccccccccccccccchhhhccccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 432 23778999999999999999999999999997773 345667999999999999987 337899999999
Q ss_pred hHHHHHHHHHHhCCCC-CCCcchHHHHHHHHHHcCCCchHHHHHHHHhhcCccHHHHHHHHHHhhcCCccccccHHHHHH
Q 001999 306 PREAKKLFWEVVGVNL-KKNPDIEQEADSIVEECGGMPYMLKLIGKELVNQSEVAIWRATVDDLRSTSSEEKKELEEVYR 384 (984)
Q Consensus 306 ~~~~~~Lf~~~~~~~~-~~~~~l~~~~~~I~~~c~GlPlai~~~~~~l~~~~~~~~w~~~l~~l~~~~~~~~~~~~~i~~ 384 (984)
.++|++||++.++... ...+.+++.+++|+++|+|+|||++++|++|+.+.+..+|+.+++.+.............++.
T Consensus 159 ~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~ 238 (287)
T PF00931_consen 159 EEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFS 238 (287)
T ss_dssp HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999998764 345566779999999999999999999999977667789999998876654311123467999
Q ss_pred HHHHHHhcChHHHHHHHhhhcccCCCCccCHHHHHHHHhhcCCCCcc
Q 001999 385 FFKLVYKNLSSVQQHCLLGWAIFPTGLEISQDYIIDCWAAQKFLPRF 431 (984)
Q Consensus 385 ~l~~sy~~L~~~~k~cfl~~s~fp~~~~i~~~~Li~~W~aeg~i~~~ 431 (984)
++.+||+.||+++|+||+|||+||+++.|+++.|+++|++||||...
T Consensus 239 ~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 239 ALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred cceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 99999999999999999999999999999999999999999999763
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.92 E-value=1.4e-24 Score=276.77 Aligned_cols=412 Identities=15% Similarity=0.121 Sum_probs=194.0
Q ss_pred ccCeEeeeccCCCCCCCCCCCcCceeEEEecCcccC-CCcchHhhcCCCccEEeccCCCCc-cCCcchhcccccCeEecC
Q 001999 498 KDTKKLSLFGFPSSTLPDMPNCCEILTLIVEGRRLE-KLPMSFFEYMCHLQLLDLHDTSIR-CLPPSISRLINLNALFLR 575 (984)
Q Consensus 498 ~~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~-~l~~~~~~~l~~Lr~L~L~~~~i~-~lp~~i~~l~~L~~L~L~ 575 (984)
.++|+|.+.+|.+........+++|++|++++|.+. .+|.. ++++++|++|+|++|.+. .+|..++++++|++|+|+
T Consensus 118 ~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 196 (968)
T PLN00113 118 SSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPND-IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLA 196 (968)
T ss_pred CCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChH-HhcCCCCCEEECccCcccccCChhhhhCcCCCeeecc
Confidence 344555555444433222233455555555555444 22333 455555555555555443 345555555555555555
Q ss_pred CCcccccCchhhhccCCCcEEEecCcccc-ccchhhhccCCCCeeecccccccCccccCCCCCCcccchhhhhccccccc
Q 001999 576 SCSLLFQLPKEIRYLQKLEILDVRHTRIQ-CLPSEIGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSNIISKLCLLEE 654 (984)
Q Consensus 576 ~c~~l~~lp~~i~~L~~L~~L~l~~~~l~-~lp~~~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~~L~~L~~ 654 (984)
+|.....+|..++++++|++|++++|++. .+|..++++++|++|+++ +|.... .+|. .++++++|+.
T Consensus 197 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~-----~n~l~~------~~p~-~l~~l~~L~~ 264 (968)
T PLN00113 197 SNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLV-----YNNLTG------PIPS-SLGNLKNLQY 264 (968)
T ss_pred CCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECc-----Cceecc------ccCh-hHhCCCCCCE
Confidence 55444445555555555555555555544 455555555555555555 332222 2332 2555555555
Q ss_pred eeeeecCCchhHHhhhhhhhHHHhhccCCCceEEEecCCcch-hhhhhhcccccCCCCCCCCCCcceeEEEecccCccce
Q 001999 655 LIIEVLDPSDRRWKQNVESIAGEIAALEQLTTLHFYFPTIKC-FKTFINRRKSVNGNKSRHGDNFKSFNIVVGYPQSTSL 733 (984)
Q Consensus 655 L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~ 733 (984)
|.+..+.. ....+..+..+++|+.|+++.+.... ++..+. ....++...+.++.-....
T Consensus 265 L~L~~n~l--------~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~------------~l~~L~~L~l~~n~~~~~~ 324 (968)
T PLN00113 265 LFLYQNKL--------SGPIPPSIFSLQKLISLDLSDNSLSGEIPELVI------------QLQNLEILHLFSNNFTGKI 324 (968)
T ss_pred EECcCCee--------eccCchhHhhccCcCEEECcCCeeccCCChhHc------------CCCCCcEEECCCCccCCcC
Confidence 55543221 12233344455555555555433221 111000 0001111111111000000
Q ss_pred eccccccccccccceEEc-cCCCCchhHHHHHhhhccceeeccccccccccccccccccccCeeEEcccCCceEEecCCC
Q 001999 734 LAGFDVSEWSAEKHLRFS-AGVEEIPGEFLTILKQAYSFELIGSQYAVNLSNFGVDNLVRLQACVIEDCNEMTSIIDGNH 812 (984)
Q Consensus 734 l~~~~~p~~~~L~~L~l~-~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~ 812 (984)
.. .+..+++|+.|.+. +...+..+..+..+++|+.|++.++.....++. .+..+++|+.|+++++.-...++.
T Consensus 325 ~~--~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~-~~~~~~~L~~L~l~~n~l~~~~p~--- 398 (968)
T PLN00113 325 PV--ALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPE-GLCSSGNLFKLILFSNSLEGEIPK--- 398 (968)
T ss_pred Ch--hHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCCh-hHhCcCCCCEEECcCCEecccCCH---
Confidence 00 01112224444444 111111112233334444444443333222222 223344445554444322212211
Q ss_pred CCcccCCCcceeecccccccccccccccccCcccccceeeecccccccccCcHHHHhhcccccEEeecccchhHHHhhcC
Q 001999 813 RGVVPFQGLNNLHIKNLPKLMHIWVGPIASGSLNSLRTLRVKICHSIKTLFSKEMVAQLNELQDLQVEDCQMIEEIVEAG 892 (984)
Q Consensus 813 ~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~ 892 (984)
....+++|+.|.+.+|.-...+ +.....+++|+.|++++| .+...+ +..+..+++|+.|++++|.....
T Consensus 399 -~~~~~~~L~~L~L~~n~l~~~~---p~~~~~l~~L~~L~Ls~N-~l~~~~-~~~~~~l~~L~~L~L~~n~~~~~----- 467 (968)
T PLN00113 399 -SLGACRSLRRVRLQDNSFSGEL---PSEFTKLPLVYFLDISNN-NLQGRI-NSRKWDMPSLQMLSLARNKFFGG----- 467 (968)
T ss_pred -HHhCCCCCCEEECcCCEeeeEC---ChhHhcCCCCCEEECcCC-cccCcc-ChhhccCCCCcEEECcCceeeee-----
Confidence 1123456666666665422221 112245667777777776 455542 24455677777777777765321
Q ss_pred cccccCCCCcccEeeccCCccccccCCCCccCCCCcceEeecccccccccCcCCcCCcCcceeechHHh
Q 001999 893 TVLAIGEFPKLKTLELIDLPKLSTICNSLLLPWPSLETIKIKACNALKSFPSTFKNTTMLKVIKGDQAW 961 (984)
Q Consensus 893 ~~~~~~~~~~L~~L~L~~c~~L~~i~~~~~~~l~sL~~L~i~~C~~L~~lp~~~~~l~~L~~l~~~~~~ 961 (984)
.+ .....++|+.|++++|.--..++. .+..+++|+.|++++|.-...+|..+.++++|+.|+.+.+.
T Consensus 468 ~p-~~~~~~~L~~L~ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 534 (968)
T PLN00113 468 LP-DSFGSKRLENLDLSRNQFSGAVPR-KLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQ 534 (968)
T ss_pred cC-cccccccceEEECcCCccCCccCh-hhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCc
Confidence 11 122446788888888654344454 56678899999999988666788888888899988876543
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.91 E-value=5.4e-24 Score=271.35 Aligned_cols=426 Identities=17% Similarity=0.162 Sum_probs=228.8
Q ss_pred hccCeEeeeccCCCCC-CCC-CCCcCceeEEEecCcccC-CCcchHhhcCCCccEEeccCCCCc-cCCcchhcccccCeE
Q 001999 497 WKDTKKLSLFGFPSST-LPD-MPNCCEILTLIVEGRRLE-KLPMSFFEYMCHLQLLDLHDTSIR-CLPPSISRLINLNAL 572 (984)
Q Consensus 497 ~~~~r~l~l~~~~~~~-l~~-~~~~~~L~~L~l~~~~l~-~l~~~~~~~l~~Lr~L~L~~~~i~-~lp~~i~~l~~L~~L 572 (984)
...++.|.+++|.+.. +|. +..+++|++|++++|.+. .+|.. +.++++|++|+|++|.+. .+|..++++.+|++|
T Consensus 139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 217 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS-LTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWI 217 (968)
T ss_pred cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChh-hhhCcCCCeeeccCCCCcCcCChHHcCcCCccEE
Confidence 4567777777776653 332 456677777777777654 34444 677777777777777665 456677777777777
Q ss_pred ecCCCcccccCchhhhccCCCcEEEecCcccc-ccchhhhccCCCCeeecccccccCccccCCCCCCcccchhhhhcccc
Q 001999 573 FLRSCSLLFQLPKEIRYLQKLEILDVRHTRIQ-CLPSEIGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSNIISKLCL 651 (984)
Q Consensus 573 ~L~~c~~l~~lp~~i~~L~~L~~L~l~~~~l~-~lp~~~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~~L~~ 651 (984)
+|++|.....+|..++++++|++|++++|.+. .+|..++++++|+.|+++ .+.... .+|.. +.++++
T Consensus 218 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~-----~n~l~~------~~p~~-l~~l~~ 285 (968)
T PLN00113 218 YLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLY-----QNKLSG------PIPPS-IFSLQK 285 (968)
T ss_pred ECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECc-----CCeeec------cCchh-HhhccC
Confidence 77776555566777777777777777777665 566667777777777776 333222 23322 555666
Q ss_pred ccceeeeecCCchhHHhhhhhhhHHHhhccCCCceEEEecCCcch-hhhhhhccc-cc---------CCCCCCC--CCCc
Q 001999 652 LEELIIEVLDPSDRRWKQNVESIAGEIAALEQLTTLHFYFPTIKC-FKTFINRRK-SV---------NGNKSRH--GDNF 718 (984)
Q Consensus 652 L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~-~~---------~~~~~~~--~~~~ 718 (984)
|+.|++.++.. ....+..+..+++|+.|+++.+.... .+....... +. .+..|.. ....
T Consensus 286 L~~L~Ls~n~l--------~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~ 357 (968)
T PLN00113 286 LISLDLSDNSL--------SGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNN 357 (968)
T ss_pred cCEEECcCCee--------ccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCC
Confidence 66666654222 12233344455555555554433221 110000000 00 0000000 0001
Q ss_pred ceeEEEecccCccceeccccccccccccceEEc-cCCCCchhHHHHHhhhccceeeccccccccccccccccccccCeeE
Q 001999 719 KSFNIVVGYPQSTSLLAGFDVSEWSAEKHLRFS-AGVEEIPGEFLTILKQAYSFELIGSQYAVNLSNFGVDNLVRLQACV 797 (984)
Q Consensus 719 l~~~~~~g~~~~~~~l~~~~~p~~~~L~~L~l~-~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~ 797 (984)
+....+.++.-...+... +.....++.|.+. +...+..+..+..+++|+.|.+.++.....++. .+.++++|+.|+
T Consensus 358 L~~L~Ls~n~l~~~~p~~--~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~ 434 (968)
T PLN00113 358 LTVLDLSTNNLTGEIPEG--LCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPS-EFTKLPLVYFLD 434 (968)
T ss_pred CcEEECCCCeeEeeCChh--HhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECCh-hHhcCCCCCEEE
Confidence 111111111000000000 0111234455554 122222222344556666666665554444443 355667777777
Q ss_pred EcccCCceEEecCCCCCcccCCCcceeecccccccccccccccccCcccccceeeecccccccccCcHHHHhhcccccEE
Q 001999 798 IEDCNEMTSIIDGNHRGVVPFQGLNNLHIKNLPKLMHIWVGPIASGSLNSLRTLRVKICHSIKTLFSKEMVAQLNELQDL 877 (984)
Q Consensus 798 l~~~~~l~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~l~~l~~L~~L 877 (984)
++++.-...++.. ...+++|+.|++++|.-...++. ....++|+.|++++| ++... .+..+..+++|++|
T Consensus 435 Ls~N~l~~~~~~~----~~~l~~L~~L~L~~n~~~~~~p~----~~~~~~L~~L~ls~n-~l~~~-~~~~~~~l~~L~~L 504 (968)
T PLN00113 435 ISNNNLQGRINSR----KWDMPSLQMLSLARNKFFGGLPD----SFGSKRLENLDLSRN-QFSGA-VPRKLGSLSELMQL 504 (968)
T ss_pred CcCCcccCccChh----hccCCCCcEEECcCceeeeecCc----ccccccceEEECcCC-ccCCc-cChhhhhhhccCEE
Confidence 7664432222211 12357777777777654333211 123467777777777 55544 23456677778888
Q ss_pred eecccchhHHHhhcCcccccCCCCcccEeeccCCccccccCCCCccCCCCcceEeecccccccccCcCCcCCcCcceeec
Q 001999 878 QVEDCQMIEEIVEAGTVLAIGEFPKLKTLELIDLPKLSTICNSLLLPWPSLETIKIKACNALKSFPSTFKNTTMLKVIKG 957 (984)
Q Consensus 878 ~l~~c~~l~~i~~~~~~~~~~~~~~L~~L~L~~c~~L~~i~~~~~~~l~sL~~L~i~~C~~L~~lp~~~~~l~~L~~l~~ 957 (984)
++++|.... ..+..+..+++|++|+|++|.-...++. .+..+++|+.|++++|+....+|..+.++++|+.++.
T Consensus 505 ~Ls~N~l~~-----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~l 578 (968)
T PLN00113 505 KLSENKLSG-----EIPDELSSCKKLVSLDLSHNQLSGQIPA-SFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNI 578 (968)
T ss_pred ECcCCccee-----eCChHHcCccCCCEEECCCCcccccCCh-hHhCcccCCEEECCCCcccccCChhHhcCcccCEEec
Confidence 887776522 2344556777777888877654344444 5667777888888777766677777777777777776
Q ss_pred hHHhh
Q 001999 958 DQAWF 962 (984)
Q Consensus 958 ~~~~w 962 (984)
..+-+
T Consensus 579 s~N~l 583 (968)
T PLN00113 579 SHNHL 583 (968)
T ss_pred cCCcc
Confidence 65433
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.86 E-value=2.3e-22 Score=215.94 Aligned_cols=384 Identities=17% Similarity=0.220 Sum_probs=274.3
Q ss_pred cCeEeeeccCCCCCCCC--C--CCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCCcchhcccccCeEec
Q 001999 499 DTKKLSLFGFPSSTLPD--M--PNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLPPSISRLINLNALFL 574 (984)
Q Consensus 499 ~~r~l~l~~~~~~~l~~--~--~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L 574 (984)
..+.+..+++.+..+.. + .-.+.-++|++++|.+..+...+|.++++|+.+++..|.++.+|...+..-||+.|+|
T Consensus 53 ~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L 132 (873)
T KOG4194|consen 53 NTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDL 132 (873)
T ss_pred CceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEee
Confidence 34445555555544311 1 1235668899999999999888899999999999999999999998888899999999
Q ss_pred CCCcccccC-chhhhccCCCcEEEecCccccccchh-hhccCCCCeeecccccccCccccCCCCCCcccchhhhhccccc
Q 001999 575 RSCSLLFQL-PKEIRYLQKLEILDVRHTRIQCLPSE-IGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSNIISKLCLL 652 (984)
Q Consensus 575 ~~c~~l~~l-p~~i~~L~~L~~L~l~~~~l~~lp~~-~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~~L~~L 652 (984)
++|. ++.+ .+.+..++.|++|||+.|.|.++|.. +..=.++++|+++ ++.+.. +..+.+..+.+|
T Consensus 133 ~~N~-I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La-----~N~It~-------l~~~~F~~lnsL 199 (873)
T KOG4194|consen 133 RHNL-ISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLA-----SNRITT-------LETGHFDSLNSL 199 (873)
T ss_pred eccc-cccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeec-----cccccc-------cccccccccchh
Confidence 9965 4544 45688999999999999999988754 5566789999998 555443 455567888888
Q ss_pred cceeeeecCCchhHHhhhhhhhHHHhhccCCCceEEEecCCcchhhhhhhcccccCCCCCCCCCCcceeEEEecccCccc
Q 001999 653 EELIIEVLDPSDRRWKQNVESIAGEIAALEQLTTLHFYFPTIKCFKTFINRRKSVNGNKSRHGDNFKSFNIVVGYPQSTS 732 (984)
Q Consensus 653 ~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~ 732 (984)
-+|.+..... ..--...++.|++|+.|++..+.+...
T Consensus 200 ~tlkLsrNri--------ttLp~r~Fk~L~~L~~LdLnrN~iriv----------------------------------- 236 (873)
T KOG4194|consen 200 LTLKLSRNRI--------TTLPQRSFKRLPKLESLDLNRNRIRIV----------------------------------- 236 (873)
T ss_pred eeeecccCcc--------cccCHHHhhhcchhhhhhccccceeee-----------------------------------
Confidence 8888875322 223445677899999999986654322
Q ss_pred eeccccccccccccceEEc-cCCCCchhHHHHHhhhccceeeccccccccccccccccccccCeeEEcccCCceEEecCC
Q 001999 733 LLAGFDVSEWSAEKHLRFS-AGVEEIPGEFLTILKQAYSFELIGSQYAVNLSNFGVDNLVRLQACVIEDCNEMTSIIDGN 811 (984)
Q Consensus 733 ~l~~~~~p~~~~L~~L~l~-~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~l~~i~~~~ 811 (984)
++..|-.+++++.|.+. |++..+.+-.+.++.+++.|++..+ .+..+..-.+-++..|+.|+++. +.++.|....
T Consensus 237 --e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N-~l~~vn~g~lfgLt~L~~L~lS~-NaI~rih~d~ 312 (873)
T KOG4194|consen 237 --EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETN-RLQAVNEGWLFGLTSLEQLDLSY-NAIQRIHIDS 312 (873)
T ss_pred --hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccc-hhhhhhcccccccchhhhhccch-hhhheeecch
Confidence 11112222336666665 5667777767777777888877433 33333333456788999999987 6677776544
Q ss_pred CCCcccCCCcceeecccccccccccccccccCcccccceeeecccccccccCcHHHHhhcccccEEeecccchhHHHhhc
Q 001999 812 HRGVVPFQGLNNLHIKNLPKLMHIWVGPIASGSLNSLRTLRVKICHSIKTLFSKEMVAQLNELQDLQVEDCQMIEEIVEA 891 (984)
Q Consensus 812 ~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~ 891 (984)
+ .-+++|+.|+|++. .+..+..+.+ ..+..|+.|.++.+ ++..+ ....+..+++|++|++++|..-- .+ +
T Consensus 313 W---sftqkL~~LdLs~N-~i~~l~~~sf--~~L~~Le~LnLs~N-si~~l-~e~af~~lssL~~LdLr~N~ls~-~I-E 382 (873)
T KOG4194|consen 313 W---SFTQKLKELDLSSN-RITRLDEGSF--RVLSQLEELNLSHN-SIDHL-AEGAFVGLSSLHKLDLRSNELSW-CI-E 382 (873)
T ss_pred h---hhcccceeEecccc-ccccCChhHH--HHHHHhhhhccccc-chHHH-HhhHHHHhhhhhhhcCcCCeEEE-EE-e
Confidence 3 33589999999874 4555433322 35778899999998 77777 44567789999999998876421 11 1
Q ss_pred CcccccCCCCcccEeeccCCccccccCCCCccCCCCcceEeeccccccccc-CcCCcCCcCccee
Q 001999 892 GTVLAIGEFPKLKTLELIDLPKLSTICNSLLLPWPSLETIKIKACNALKSF-PSTFKNTTMLKVI 955 (984)
Q Consensus 892 ~~~~~~~~~~~L~~L~L~~c~~L~~i~~~~~~~l~sL~~L~i~~C~~L~~l-p~~~~~l~~L~~l 955 (984)
.....+.++|+|+.|.+.+ ++|++|+...+..+++||.|++.+++ +.++ |..|..+ .|++|
T Consensus 383 Daa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~Na-iaSIq~nAFe~m-~Lk~L 444 (873)
T KOG4194|consen 383 DAAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDNA-IASIQPNAFEPM-ELKEL 444 (873)
T ss_pred cchhhhccchhhhheeecC-ceeeecchhhhccCcccceecCCCCc-ceeecccccccc-hhhhh
Confidence 2334567899999999999 78999998778899999999999877 6666 5556655 55544
No 7
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.83 E-value=4.5e-20 Score=235.04 Aligned_cols=357 Identities=22% Similarity=0.284 Sum_probs=241.4
Q ss_pred cCeEeeeccCCCCCCC----CCCCcCceeEEEecCccc-------CCCcchHhhcC-CCccEEeccCCCCccCCcchhcc
Q 001999 499 DTKKLSLFGFPSSTLP----DMPNCCEILTLIVEGRRL-------EKLPMSFFEYM-CHLQLLDLHDTSIRCLPPSISRL 566 (984)
Q Consensus 499 ~~r~l~l~~~~~~~l~----~~~~~~~L~~L~l~~~~l-------~~l~~~~~~~l-~~Lr~L~L~~~~i~~lp~~i~~l 566 (984)
+++.+++....+..+. .+..+++|+.|.+..+.. -.+|.+ |..+ ..||.|++.++.++.+|..+ .+
T Consensus 533 ~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~-~~~lp~~Lr~L~~~~~~l~~lP~~f-~~ 610 (1153)
T PLN03210 533 KVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEG-FDYLPPKLRLLRWDKYPLRCMPSNF-RP 610 (1153)
T ss_pred eeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcc-hhhcCcccEEEEecCCCCCCCCCcC-Cc
Confidence 3455555444333321 246778888888764421 135655 4444 45888888888888888776 46
Q ss_pred cccCeEecCCCcccccCchhhhccCCCcEEEecCc-cccccchhhhccCCCCeeecccccccCccccCCCCCCcccchhh
Q 001999 567 INLNALFLRSCSLLFQLPKEIRYLQKLEILDVRHT-RIQCLPSEIGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSNI 645 (984)
Q Consensus 567 ~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~~-~l~~lp~~~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~ 645 (984)
.+|+.|++++| .+..+|..+..+++|+.|+++++ .+..+| .++.+++|+.|++. +|..+. .+|..
T Consensus 611 ~~L~~L~L~~s-~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~-----~c~~L~------~lp~s- 676 (1153)
T PLN03210 611 ENLVKLQMQGS-KLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLS-----DCSSLV------ELPSS- 676 (1153)
T ss_pred cCCcEEECcCc-cccccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEec-----CCCCcc------ccchh-
Confidence 78888888885 47788888888888888888877 466776 47788888888888 555555 56754
Q ss_pred hhccccccceeeeecCCchhHHhhhhhhhHHHhhccCCCceEEEecCCc-chhhhhhhcccccCCCCCCCCCCcceeEEE
Q 001999 646 ISKLCLLEELIIEVLDPSDRRWKQNVESIAGEIAALEQLTTLHFYFPTI-KCFKTFINRRKSVNGNKSRHGDNFKSFNIV 724 (984)
Q Consensus 646 l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 724 (984)
++++++|+.|.+.++... ...+..+ ++++|+.|+++.+.. ..++.
T Consensus 677 i~~L~~L~~L~L~~c~~L--------~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~------------------------- 722 (1153)
T PLN03210 677 IQYLNKLEDLDMSRCENL--------EILPTGI-NLKSLYRLNLSGCSRLKSFPD------------------------- 722 (1153)
T ss_pred hhccCCCCEEeCCCCCCc--------CccCCcC-CCCCCCEEeCCCCCCcccccc-------------------------
Confidence 788888888888764321 2222222 577788877764321 00100
Q ss_pred ecccCccceeccccccccccccceEEc-cCCCCchhHHHHHhhhccceeeccccc------cccccccccccccccCeeE
Q 001999 725 VGYPQSTSLLAGFDVSEWSAEKHLRFS-AGVEEIPGEFLTILKQAYSFELIGSQY------AVNLSNFGVDNLVRLQACV 797 (984)
Q Consensus 725 ~g~~~~~~~l~~~~~p~~~~L~~L~l~-~~~~~l~~~~~~~l~~L~~L~l~~~~~------~~~l~~~~~~~l~~L~~L~ 797 (984)
.+ .+++.|.+. +.+..+|... .+++|..|.+.++.. ...++.......++|+.|+
T Consensus 723 --------------~~--~nL~~L~L~~n~i~~lP~~~--~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~ 784 (1153)
T PLN03210 723 --------------IS--TNISWLDLDETAIEEFPSNL--RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLF 784 (1153)
T ss_pred --------------cc--CCcCeeecCCCccccccccc--cccccccccccccchhhccccccccchhhhhccccchhee
Confidence 00 124455555 2333343321 345666665544321 1112222223457899999
Q ss_pred EcccCCceEEecCCCCCcccCCCcceeecccccccccccccccccCcccccceeeecccccccccCcHHHHhhcccccEE
Q 001999 798 IEDCNEMTSIIDGNHRGVVPFQGLNNLHIKNLPKLMHIWVGPIASGSLNSLRTLRVKICHSIKTLFSKEMVAQLNELQDL 877 (984)
Q Consensus 798 l~~~~~l~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~l~~l~~L~~L 877 (984)
+++|+.+..+|... ..+++|+.|.|++|.+++.++.. ..+++|+.|++++|.++..++ ...++|++|
T Consensus 785 Ls~n~~l~~lP~si----~~L~~L~~L~Ls~C~~L~~LP~~----~~L~sL~~L~Ls~c~~L~~~p-----~~~~nL~~L 851 (1153)
T PLN03210 785 LSDIPSLVELPSSI----QNLHKLEHLEIENCINLETLPTG----INLESLESLDLSGCSRLRTFP-----DISTNISDL 851 (1153)
T ss_pred CCCCCCccccChhh----hCCCCCCEEECCCCCCcCeeCCC----CCccccCEEECCCCCcccccc-----ccccccCEe
Confidence 99998887777543 34689999999999988876432 268999999999998887762 234789999
Q ss_pred eecccchhHHHhhcCcccccCCCCcccEeeccCCccccccCCCCccCCCCcceEeecccccccccC
Q 001999 878 QVEDCQMIEEIVEAGTVLAIGEFPKLKTLELIDLPKLSTICNSLLLPWPSLETIKIKACNALKSFP 943 (984)
Q Consensus 878 ~l~~c~~l~~i~~~~~~~~~~~~~~L~~L~L~~c~~L~~i~~~~~~~l~sL~~L~i~~C~~L~~lp 943 (984)
+++++.. + .++..+..+++|++|+|++|++|+.++. ....+++|+.|++++|++|+.++
T Consensus 852 ~Ls~n~i-~-----~iP~si~~l~~L~~L~L~~C~~L~~l~~-~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 852 NLSRTGI-E-----EVPWWIEKFSNLSFLDMNGCNNLQRVSL-NISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred ECCCCCC-c-----cChHHHhcCCCCCEEECCCCCCcCccCc-ccccccCCCeeecCCCccccccc
Confidence 9998754 3 3555678899999999999999999988 77889999999999999998764
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.81 E-value=2.1e-21 Score=209.52 Aligned_cols=390 Identities=19% Similarity=0.231 Sum_probs=239.3
Q ss_pred CeEeeeccCCCCC--CCC-CCCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCCcchhcccccCeEecCC
Q 001999 500 TKKLSLFGFPSST--LPD-MPNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLPPSISRLINLNALFLRS 576 (984)
Q Consensus 500 ~r~l~l~~~~~~~--l~~-~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~ 576 (984)
+|-+.+++|..+. +|. ...+++++-|.+....+..+|+. ++.+.+|+.|.+++|++.++-..+..|+.||.+.+++
T Consensus 9 VrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeE-L~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~ 87 (1255)
T KOG0444|consen 9 VRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEE-LSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRD 87 (1255)
T ss_pred eecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHH-HHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhc
Confidence 4445555555442 332 24455666666666666666666 5666666666666666666555566666666666666
Q ss_pred Cccc-ccCchhhhccCCCcEEEecCccccccchhhhccCCCCeeecccccccCccccCCCCCCcccchhhhhccccccce
Q 001999 577 CSLL-FQLPKEIRYLQKLEILDVRHTRIQCLPSEIGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSNIISKLCLLEEL 655 (984)
Q Consensus 577 c~~l-~~lp~~i~~L~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~~L~~L~~L 655 (984)
|..- ..+|..|-+|..|.+||+++|++++.|..+.+-+++-.|+++ .+++- .||...+-+|+.|-.|
T Consensus 88 N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS-----~N~Ie-------tIPn~lfinLtDLLfL 155 (1255)
T KOG0444|consen 88 NNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLS-----YNNIE-------TIPNSLFINLTDLLFL 155 (1255)
T ss_pred cccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcc-----cCccc-------cCCchHHHhhHhHhhh
Confidence 4311 235666666666666666666666666666666666666666 33333 3565556666666555
Q ss_pred eeeecCCchhHHhhhhhhhHHHhhccCCCceEEEecCCcchhhhhhhcccccCCCCCCCCCCcceeEEEecccCccceec
Q 001999 656 IIEVLDPSDRRWKQNVESIAGEIAALEQLTTLHFYFPTIKCFKTFINRRKSVNGNKSRHGDNFKSFNIVVGYPQSTSLLA 735 (984)
Q Consensus 656 ~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~l~ 735 (984)
++++. ..+..+..+..+.+|++|.++.+....++.
T Consensus 156 DLS~N---------rLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQL------------------------------------ 190 (1255)
T KOG0444|consen 156 DLSNN---------RLEMLPPQIRRLSMLQTLKLSNNPLNHFQL------------------------------------ 190 (1255)
T ss_pred ccccc---------hhhhcCHHHHHHhhhhhhhcCCChhhHHHH------------------------------------
Confidence 55531 234455556666666666666554333220
Q ss_pred cccccccccccceEEccC---CCCchhHHHHHhhhccceeeccccccccccccccccccccCeeEEcccCCceEEecCCC
Q 001999 736 GFDVSEWSAEKHLRFSAG---VEEIPGEFLTILKQAYSFELIGSQYAVNLSNFGVDNLVRLQACVIEDCNEMTSIIDGNH 812 (984)
Q Consensus 736 ~~~~p~~~~L~~L~l~~~---~~~l~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~ 812 (984)
-++|+.+.|..|++++- ..++|. .+..+.+|..+++..+ .+..+|+ .+-++++|+.|++++ +.++.+.-..
T Consensus 191 -rQLPsmtsL~vLhms~TqRTl~N~Pt-sld~l~NL~dvDlS~N-~Lp~vPe-cly~l~~LrrLNLS~-N~iteL~~~~- 264 (1255)
T KOG0444|consen 191 -RQLPSMTSLSVLHMSNTQRTLDNIPT-SLDDLHNLRDVDLSEN-NLPIVPE-CLYKLRNLRRLNLSG-NKITELNMTE- 264 (1255)
T ss_pred -hcCccchhhhhhhcccccchhhcCCC-chhhhhhhhhcccccc-CCCcchH-HHhhhhhhheeccCc-CceeeeeccH-
Confidence 01334344444444411 112221 2445666666666322 3333443 345678899999987 5666655322
Q ss_pred CCcccCCCcceeecccccccccccccccccCcccccceeeecccccccccCcHHHHhhcccccEEeecccchhHHHhhcC
Q 001999 813 RGVVPFQGLNNLHIKNLPKLMHIWVGPIASGSLNSLRTLRVKICHSIKTLFSKEMVAQLNELQDLQVEDCQMIEEIVEAG 892 (984)
Q Consensus 813 ~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~ 892 (984)
....+|++|+++.. .+..+ |.....++.|++|.+.++ +|+--..++.++.|.+|+.+...+|.. + -
T Consensus 265 ---~~W~~lEtLNlSrN-QLt~L---P~avcKL~kL~kLy~n~N-kL~FeGiPSGIGKL~~Levf~aanN~L-E-----l 330 (1255)
T KOG0444|consen 265 ---GEWENLETLNLSRN-QLTVL---PDAVCKLTKLTKLYANNN-KLTFEGIPSGIGKLIQLEVFHAANNKL-E-----L 330 (1255)
T ss_pred ---HHHhhhhhhccccc-hhccc---hHHHhhhHHHHHHHhccC-cccccCCccchhhhhhhHHHHhhcccc-c-----c
Confidence 12378888888873 34433 334467899999999888 776655568899999999999987653 2 2
Q ss_pred cccccCCCCcccEeeccCCccccccCCCCccCCCCcceEeecccccccccCcCCcCCcCcceeechHHhhhhccccC
Q 001999 893 TVLAIGEFPKLKTLELIDLPKLSTICNSLLLPWPSLETIKIKACNALKSFPSTFKNTTMLKVIKGDQAWFDQLEWEN 969 (984)
Q Consensus 893 ~~~~~~~~~~L~~L~L~~c~~L~~i~~~~~~~l~sL~~L~i~~C~~L~~lp~~~~~l~~L~~l~~~~~~w~~l~~~~ 969 (984)
.+.+++.+++|+.|.|+. +.|-.+|. .+.-+|.|+.|+++.+|+|-.-|.-...-++|..-+++-.--+++..-+
T Consensus 331 VPEglcRC~kL~kL~L~~-NrLiTLPe-aIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNIDFSLq~QlrlAG 405 (1255)
T KOG0444|consen 331 VPEGLCRCVKLQKLKLDH-NRLITLPE-AIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNIDFSLQHQLRLAG 405 (1255)
T ss_pred CchhhhhhHHHHHhcccc-cceeechh-hhhhcCCcceeeccCCcCccCCCCcchhhhcceeeecceehhhHHhhcc
Confidence 345778999999999986 77888888 7788899999999999999887754444456666666655555554444
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.79 E-value=7.3e-22 Score=203.45 Aligned_cols=176 Identities=30% Similarity=0.364 Sum_probs=142.6
Q ss_pred cCeEeeeccCCCCCC-CCCCCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCCcchhcccccCeEecCCC
Q 001999 499 DTKKLSLFGFPSSTL-PDMPNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLPPSISRLINLNALFLRSC 577 (984)
Q Consensus 499 ~~r~l~l~~~~~~~l-~~~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c 577 (984)
.+..+.+..|.+..+ +...++..|.+|.++.|.+.++|+. ++.+..+..|+.++|++..+|+.++.+..|+.|+.+++
T Consensus 46 ~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~a-ig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n 124 (565)
T KOG0472|consen 46 DLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPAA-IGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSN 124 (565)
T ss_pred chhhhhhccCchhhccHhhhcccceeEEEeccchhhhCCHH-HHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcccc
Confidence 345566666776654 4457788899999999999999888 78888999999999999999999999999999999884
Q ss_pred cccccCchhhhccCCCcEEEecCccccccchhhhccCCCCeeecccccccCccccCCCCCCcccchhhhhccccccceee
Q 001999 578 SLLFQLPKEIRYLQKLEILDVRHTRIQCLPSEIGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSNIISKLCLLEELII 657 (984)
Q Consensus 578 ~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~~L~~L~~L~l 657 (984)
.+.++|++++.+..|+.|+..+|++..+|.+++.+.+|..|++. ++.... +|.+.+. ++.|++|+.
T Consensus 125 -~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~-----~n~l~~-------l~~~~i~-m~~L~~ld~ 190 (565)
T KOG0472|consen 125 -ELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLE-----GNKLKA-------LPENHIA-MKRLKHLDC 190 (565)
T ss_pred -ceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhcc-----ccchhh-------CCHHHHH-HHHHHhccc
Confidence 57889999999999999999999999999999999999888887 665544 6766555 888888876
Q ss_pred eecCCchhHHhhhhhhhHHHhhccCCCceEEEecCCcchhh
Q 001999 658 EVLDPSDRRWKQNVESIAGEIAALEQLTTLHFYFPTIKCFK 698 (984)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 698 (984)
-. +..+..+.+++.+..|..|.+..+.+..+|
T Consensus 191 ~~---------N~L~tlP~~lg~l~~L~~LyL~~Nki~~lP 222 (565)
T KOG0472|consen 191 NS---------NLLETLPPELGGLESLELLYLRRNKIRFLP 222 (565)
T ss_pred ch---------hhhhcCChhhcchhhhHHHHhhhcccccCC
Confidence 53 135668888999999988888877665554
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.79 E-value=5.4e-20 Score=197.92 Aligned_cols=365 Identities=19% Similarity=0.231 Sum_probs=266.0
Q ss_pred ceeEEEecCcccCCCcchHhhcCC--CccEEeccCCCCccC-CcchhcccccCeEecCCCcccccCchhhhccCCCcEEE
Q 001999 521 EILTLIVEGRRLEKLPMSFFEYMC--HLQLLDLHDTSIRCL-PPSISRLINLNALFLRSCSLLFQLPKEIRYLQKLEILD 597 (984)
Q Consensus 521 ~L~~L~l~~~~l~~l~~~~~~~l~--~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~ 597 (984)
+-+.|+++.+.+..+...-+..+- .-+.||+++|.+..+ +..|.++++|+.++++.| .++.+|...+...+|+.|+
T Consensus 53 ~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N-~Lt~IP~f~~~sghl~~L~ 131 (873)
T KOG4194|consen 53 NTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKN-ELTRIPRFGHESGHLEKLD 131 (873)
T ss_pred CceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccc-hhhhcccccccccceeEEe
Confidence 346678888888776444333333 346699999999987 667889999999999995 5899999888888899999
Q ss_pred ecCccccccch-hhhccCCCCeeecccccccCccccCCCCCCcccchhhhhccccccceeeeecCCchhHHhhhhhhhHH
Q 001999 598 VRHTRIQCLPS-EIGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSNIISKLCLLEELIIEVLDPSDRRWKQNVESIAG 676 (984)
Q Consensus 598 l~~~~l~~lp~-~~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~ 676 (984)
|.+|.|.++-. .+..++.||.|+++ .+... ++|...+.+-.++++|++....+ .+-...
T Consensus 132 L~~N~I~sv~se~L~~l~alrslDLS-----rN~is-------~i~~~sfp~~~ni~~L~La~N~I--------t~l~~~ 191 (873)
T KOG4194|consen 132 LRHNLISSVTSEELSALPALRSLDLS-----RNLIS-------EIPKPSFPAKVNIKKLNLASNRI--------TTLETG 191 (873)
T ss_pred eeccccccccHHHHHhHhhhhhhhhh-----hchhh-------cccCCCCCCCCCceEEeeccccc--------cccccc
Confidence 99999987754 48889999999999 55443 36655566667899999986332 233344
Q ss_pred HhhccCCCceEEEecCCcchhhhhhhcccccCCCCCCCCCCcceeEEEecccCccceeccccccccccccceEEc-cCCC
Q 001999 677 EIAALEQLTTLHFYFPTIKCFKTFINRRKSVNGNKSRHGDNFKSFNIVVGYPQSTSLLAGFDVSEWSAEKHLRFS-AGVE 755 (984)
Q Consensus 677 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~l~~~~~p~~~~L~~L~l~-~~~~ 755 (984)
.+.++.+|-.|.++-+.++.++... |..++.|+.|.+. |.++
T Consensus 192 ~F~~lnsL~tlkLsrNrittLp~r~-------------------------------------Fk~L~~L~~LdLnrN~ir 234 (873)
T KOG4194|consen 192 HFDSLNSLLTLKLSRNRITTLPQRS-------------------------------------FKRLPKLESLDLNRNRIR 234 (873)
T ss_pred cccccchheeeecccCcccccCHHH-------------------------------------hhhcchhhhhhcccccee
Confidence 6677888999999877766654321 2333447777777 5555
Q ss_pred CchhHHHHHhhhccceeeccccccccccccccccccccCeeEEcccCCceEEecCCCCCcccCCCcceeecccccccccc
Q 001999 756 EIPGEFLTILKQAYSFELIGSQYAVNLSNFGVDNLVRLQACVIEDCNEMTSIIDGNHRGVVPFQGLNNLHIKNLPKLMHI 835 (984)
Q Consensus 756 ~l~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~i 835 (984)
......+.+++.|+.|.+-.+ .+..+.+-.|-++.+++.|+++. +.+..+..+. +..+.+|+.|++++.. +..|
T Consensus 235 ive~ltFqgL~Sl~nlklqrN-~I~kL~DG~Fy~l~kme~l~L~~-N~l~~vn~g~---lfgLt~L~~L~lS~Na-I~ri 308 (873)
T KOG4194|consen 235 IVEGLTFQGLPSLQNLKLQRN-DISKLDDGAFYGLEKMEHLNLET-NRLQAVNEGW---LFGLTSLEQLDLSYNA-IQRI 308 (873)
T ss_pred eehhhhhcCchhhhhhhhhhc-CcccccCcceeeecccceeeccc-chhhhhhccc---ccccchhhhhccchhh-hhee
Confidence 555667778888888877443 45556654566789999999986 5666665443 3346899999998843 3333
Q ss_pred cccccccCcccccceeeecccccccccCcHHHHhhcccccEEeecccchhHHHhhcCcccccCCCCcccEeeccCCcccc
Q 001999 836 WVGPIASGSLNSLRTLRVKICHSIKTLFSKEMVAQLNELQDLQVEDCQMIEEIVEAGTVLAIGEFPKLKTLELIDLPKLS 915 (984)
Q Consensus 836 ~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~L~~L~L~~c~~L~ 915 (984)
-...+ ...++|+.|+++++ .++.+ +...+..|..|++|.+++|.. ..+- ...+..+.+|++|+|++ +.|.
T Consensus 309 h~d~W--sftqkL~~LdLs~N-~i~~l-~~~sf~~L~~Le~LnLs~Nsi-~~l~----e~af~~lssL~~LdLr~-N~ls 378 (873)
T KOG4194|consen 309 HIDSW--SFTQKLKELDLSSN-RITRL-DEGSFRVLSQLEELNLSHNSI-DHLA----EGAFVGLSSLHKLDLRS-NELS 378 (873)
T ss_pred ecchh--hhcccceeEecccc-ccccC-ChhHHHHHHHhhhhcccccch-HHHH----hhHHHHhhhhhhhcCcC-CeEE
Confidence 21111 46899999999999 89998 668899999999999999764 3332 23567889999999998 4455
Q ss_pred ccCCC---CccCCCCcceEeecccccccccCc-CCcCCcCcceeechHH
Q 001999 916 TICNS---LLLPWPSLETIKIKACNALKSFPS-TFKNTTMLKVIKGDQA 960 (984)
Q Consensus 916 ~i~~~---~~~~l~sL~~L~i~~C~~L~~lp~-~~~~l~~L~~l~~~~~ 960 (984)
....+ .+..+|+|++|.+.|++ ++++|. .+..+..|++|+...+
T Consensus 379 ~~IEDaa~~f~gl~~LrkL~l~gNq-lk~I~krAfsgl~~LE~LdL~~N 426 (873)
T KOG4194|consen 379 WCIEDAAVAFNGLPSLRKLRLTGNQ-LKSIPKRAFSGLEALEHLDLGDN 426 (873)
T ss_pred EEEecchhhhccchhhhheeecCce-eeecchhhhccCcccceecCCCC
Confidence 43322 34569999999999965 999985 5778889998876543
No 11
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.73 E-value=1.1e-19 Score=196.50 Aligned_cols=322 Identities=21% Similarity=0.278 Sum_probs=179.7
Q ss_pred ccCeEeeeccCCCCCCC-CCCCcCceeEEEecCcccC--CCcchHhhcCCCccEEeccCCCCccCCcchhcccccCeEec
Q 001999 498 KDTKKLSLFGFPSSTLP-DMPNCCEILTLIVEGRRLE--KLPMSFFEYMCHLQLLDLHDTSIRCLPPSISRLINLNALFL 574 (984)
Q Consensus 498 ~~~r~l~l~~~~~~~l~-~~~~~~~L~~L~l~~~~l~--~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L 574 (984)
.++.||++..|.+..+. .+..++.||++.+..|++. .+|+. +-.+.-|.+||||+|+++..|..+..-+++-.|+|
T Consensus 55 qkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~d-iF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNL 133 (1255)
T KOG0444|consen 55 QKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTD-IFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNL 133 (1255)
T ss_pred hhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCch-hcccccceeeecchhhhhhcchhhhhhcCcEEEEc
Confidence 34455555555444322 2345555555555555543 34555 23355555566666655555555555555555666
Q ss_pred CCCcccccCchh-hhccCCCcEEEecCccccccchhhhccCCCCeeecccccccCccccCCCCCCcccchhhhhcccccc
Q 001999 575 RSCSLLFQLPKE-IRYLQKLEILDVRHTRIQCLPSEIGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSNIISKLCLLE 653 (984)
Q Consensus 575 ~~c~~l~~lp~~-i~~L~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~~L~~L~ 653 (984)
++| .+..+|.. +-+|+.|-.||+++|++..+|+.+.+|..|++|.++ ++.... +....+..|++|+
T Consensus 134 S~N-~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls-----~NPL~h-------fQLrQLPsmtsL~ 200 (1255)
T KOG0444|consen 134 SYN-NIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLS-----NNPLNH-------FQLRQLPSMTSLS 200 (1255)
T ss_pred ccC-ccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcC-----CChhhH-------HHHhcCccchhhh
Confidence 553 35555544 345555555666666666666555556666665555 332111 1111123344444
Q ss_pred ceeeeecCCchhHHhhhhhhhHHHhhccCCCceEEEecCCcchhhhhhhcccccCCCCCCCCCCcceeEEEecccCccce
Q 001999 654 ELIIEVLDPSDRRWKQNVESIAGEIAALEQLTTLHFYFPTIKCFKTFINRRKSVNGNKSRHGDNFKSFNIVVGYPQSTSL 733 (984)
Q Consensus 654 ~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~ 733 (984)
.|.++++.-. ...++..+..+.||+.++++.++....|..
T Consensus 201 vLhms~TqRT-------l~N~Ptsld~l~NL~dvDlS~N~Lp~vPec--------------------------------- 240 (1255)
T KOG0444|consen 201 VLHMSNTQRT-------LDNIPTSLDDLHNLRDVDLSENNLPIVPEC--------------------------------- 240 (1255)
T ss_pred hhhcccccch-------hhcCCCchhhhhhhhhccccccCCCcchHH---------------------------------
Confidence 4444432211 222344445555555555554433222211
Q ss_pred eccccccccccccceEEccCCCCchhHHHHHhhhccceeeccccccccccccccccccccCeeEEcccCCceEEecCCCC
Q 001999 734 LAGFDVSEWSAEKHLRFSAGVEEIPGEFLTILKQAYSFELIGSQYAVNLSNFGVDNLVRLQACVIEDCNEMTSIIDGNHR 813 (984)
Q Consensus 734 l~~~~~p~~~~L~~L~l~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~ 813 (984)
+..+++|+.|++.++ .++.+.. +.+...+|++|+++. ++++.+|..
T Consensus 241 ----------------------------ly~l~~LrrLNLS~N-~iteL~~-~~~~W~~lEtLNlSr-NQLt~LP~a--- 286 (1255)
T KOG0444|consen 241 ----------------------------LYKLRNLRRLNLSGN-KITELNM-TEGEWENLETLNLSR-NQLTVLPDA--- 286 (1255)
T ss_pred ----------------------------HhhhhhhheeccCcC-ceeeeec-cHHHHhhhhhhcccc-chhccchHH---
Confidence 112233333333222 1111111 344567888888887 667777643
Q ss_pred CcccCCCcceeecccccccccccccccccCcccccceeeecccccccccCcHHHHhhcccccEEeecccchhHHHhhcCc
Q 001999 814 GVVPFQGLNNLHIKNLPKLMHIWVGPIASGSLNSLRTLRVKICHSIKTLFSKEMVAQLNELQDLQVEDCQMIEEIVEAGT 893 (984)
Q Consensus 814 ~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~ 893 (984)
.+.+++|++|.+.+. ++. +...|...+.+.+|+.+...++ +|.-. +..+..++.|+.|.++.|..++ +
T Consensus 287 -vcKL~kL~kLy~n~N-kL~-FeGiPSGIGKL~~Levf~aanN-~LElV--PEglcRC~kL~kL~L~~NrLiT------L 354 (1255)
T KOG0444|consen 287 -VCKLTKLTKLYANNN-KLT-FEGIPSGIGKLIQLEVFHAANN-KLELV--PEGLCRCVKLQKLKLDHNRLIT------L 354 (1255)
T ss_pred -HhhhHHHHHHHhccC-ccc-ccCCccchhhhhhhHHHHhhcc-ccccC--chhhhhhHHHHHhcccccceee------c
Confidence 445688888887653 221 1122334477888888888887 77766 4788999999999999887763 6
Q ss_pred ccccCCCCcccEeeccCCccccccCC
Q 001999 894 VLAIGEFPKLKTLELIDLPKLSTICN 919 (984)
Q Consensus 894 ~~~~~~~~~L~~L~L~~c~~L~~i~~ 919 (984)
+..+.-+|.|+.|++.+.|+|.-.|.
T Consensus 355 PeaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 355 PEAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred hhhhhhcCCcceeeccCCcCccCCCC
Confidence 67888899999999999999876655
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.69 E-value=2.8e-18 Score=195.02 Aligned_cols=404 Identities=18% Similarity=0.200 Sum_probs=221.0
Q ss_pred CeEeeeccCCCCCCC--CCCCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCCcchhcccccCeEecCCC
Q 001999 500 TKKLSLFGFPSSTLP--DMPNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLPPSISRLINLNALFLRSC 577 (984)
Q Consensus 500 ~r~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c 577 (984)
+.++++..|..-..| ...++-+|++|++++|.+..+|.. +..+.+|+.|+++.|.|...|.++.++.+|++|.|.+
T Consensus 23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~-it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~- 100 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSFPIQ-ITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKN- 100 (1081)
T ss_pred HHhhhccccccccCchHHhhheeeeEEeeccccccccCCch-hhhHHHHhhcccchhhHhhCchhhhhhhcchhheecc-
Confidence 445555555444433 234455699999999999998887 7888899999999999999998899999999999987
Q ss_pred cccccCchhhhccCCCcEEEecCccccccchhhhccCCCCeeecccccccCccccCC-------------CCCCcccchh
Q 001999 578 SLLFQLPKEIRYLQKLEILDVRHTRIQCLPSEIGQLIKLKCLRVSWVENVGNHTHAG-------------AWPGEMISSN 644 (984)
Q Consensus 578 ~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~~l~~-------------~~~~~~ip~~ 644 (984)
+.+..+|.++..+++|+.||+++|.+...|..+..++.+..+.++ ++..... ..-+..++.+
T Consensus 101 n~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s-----~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~ 175 (1081)
T KOG0618|consen 101 NRLQSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAAS-----NNEKIQRLGQTSIKKLDLRLNVLGGSFLID 175 (1081)
T ss_pred chhhcCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhh-----cchhhhhhccccchhhhhhhhhcccchhcc
Confidence 568899999999999999999999999888888888888777777 3311110 0000011100
Q ss_pred hhhccccccceeeeecCCchhHHhhhhhhhHHHhhccCCCceEEEecCCcchhhhhhhcccccCCCCCCCCCCcceeEEE
Q 001999 645 IISKLCLLEELIIEVLDPSDRRWKQNVESIAGEIAALEQLTTLHFYFPTIKCFKTFINRRKSVNGNKSRHGDNFKSFNIV 724 (984)
Q Consensus 645 ~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 724 (984)
+..++. .|++... .- ...++..+.+|+.+...-+....+...... ++....
T Consensus 176 -i~~l~~--~ldLr~N----------~~-~~~dls~~~~l~~l~c~rn~ls~l~~~g~~---------------l~~L~a 226 (1081)
T KOG0618|consen 176 -IYNLTH--QLDLRYN----------EM-EVLDLSNLANLEVLHCERNQLSELEISGPS---------------LTALYA 226 (1081)
T ss_pred -hhhhhe--eeecccc----------hh-hhhhhhhccchhhhhhhhcccceEEecCcc---------------hheeee
Confidence 111111 1222210 00 123344444444443332221111100000 000000
Q ss_pred ecccCccceeccccccccccccceEEc-cCCCCchhHHHHHhhhccceeeccc----------------------ccccc
Q 001999 725 VGYPQSTSLLAGFDVSEWSAEKHLRFS-AGVEEIPGEFLTILKQAYSFELIGS----------------------QYAVN 781 (984)
Q Consensus 725 ~g~~~~~~~l~~~~~p~~~~L~~L~l~-~~~~~l~~~~~~~l~~L~~L~l~~~----------------------~~~~~ 781 (984)
..++ +......|.-.+++.+.++ +...+++ .+...+.+++.+....+ +.+..
T Consensus 227 ~~n~----l~~~~~~p~p~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~y 301 (1081)
T KOG0618|consen 227 DHNP----LTTLDVHPVPLNLQYLDISHNNLSNLP-EWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEY 301 (1081)
T ss_pred ccCc----ceeeccccccccceeeecchhhhhcch-HHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhh
Confidence 0000 0011111222234455554 4445555 34444444444443222 22333
Q ss_pred ccccccccccccCeeEEcccCCceEEecCCCC----------------------CcccCCCcceeecccccccccccccc
Q 001999 782 LSNFGVDNLVRLQACVIEDCNEMTSIIDGNHR----------------------GVVPFQGLNNLHIKNLPKLMHIWVGP 839 (984)
Q Consensus 782 l~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~----------------------~~~~~~~L~~L~l~~~~~l~~i~~~~ 839 (984)
+++ ..++++.|++|++.. +++..++..... +...++.|+.|++.+.. +.+- ..
T Consensus 302 ip~-~le~~~sL~tLdL~~-N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~-Ltd~--c~ 376 (1081)
T KOG0618|consen 302 IPP-FLEGLKSLRTLDLQS-NNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNH-LTDS--CF 376 (1081)
T ss_pred CCC-cccccceeeeeeehh-ccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCc-cccc--ch
Confidence 333 234466777777765 344444432210 01112334444443321 1110 01
Q ss_pred cccCcccccceeeecccccccccCcHHHHhhcccccEEeecccchhHHHhhcCcccccCCCCcccEeeccCCccccccCC
Q 001999 840 IASGSLNSLRTLRVKICHSIKTLFSKEMVAQLNELQDLQVEDCQMIEEIVEAGTVLAIGEFPKLKTLELIDLPKLSTICN 919 (984)
Q Consensus 840 ~~~~~l~~L~~L~l~~c~~L~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~L~~L~L~~c~~L~~i~~ 919 (984)
....++.+|+.|+++++ .|..+ |...+.++..|++|++++|.. +. ++.....++.|++|...+ +.|..+|.
T Consensus 377 p~l~~~~hLKVLhLsyN-rL~~f-pas~~~kle~LeeL~LSGNkL-~~-----Lp~tva~~~~L~tL~ahs-N~l~~fPe 447 (1081)
T KOG0618|consen 377 PVLVNFKHLKVLHLSYN-RLNSF-PASKLRKLEELEELNLSGNKL-TT-----LPDTVANLGRLHTLRAHS-NQLLSFPE 447 (1081)
T ss_pred hhhccccceeeeeeccc-ccccC-CHHHHhchHHhHHHhcccchh-hh-----hhHHHHhhhhhHHHhhcC-Cceeechh
Confidence 12246788999999998 78877 678888999999999998754 33 233445566666666555 45566664
Q ss_pred CCccCCCCcceEeeccccccccc--CcCCcCCcCcceeechHHhh
Q 001999 920 SLLLPWPSLETIKIKACNALKSF--PSTFKNTTMLKVIKGDQAWF 962 (984)
Q Consensus 920 ~~~~~l~sL~~L~i~~C~~L~~l--p~~~~~l~~L~~l~~~~~~w 962 (984)
+..+|+|+.++++ |.+|+.+ |....+ ++|+.++.+.+-|
T Consensus 448 --~~~l~qL~~lDlS-~N~L~~~~l~~~~p~-p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 448 --LAQLPQLKVLDLS-CNNLSEVTLPEALPS-PNLKYLDLSGNTR 488 (1081)
T ss_pred --hhhcCcceEEecc-cchhhhhhhhhhCCC-cccceeeccCCcc
Confidence 5566677777774 4556653 322222 5666666666655
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.68 E-value=2.8e-19 Score=184.58 Aligned_cols=177 Identities=26% Similarity=0.323 Sum_probs=115.3
Q ss_pred cCeEeeeccCCCCCCCC-CCCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCCcchhcccccCeEecCCC
Q 001999 499 DTKKLSLFGFPSSTLPD-MPNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLPPSISRLINLNALFLRSC 577 (984)
Q Consensus 499 ~~r~l~l~~~~~~~l~~-~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c 577 (984)
.++++.++.|...+++. +..+..|..|+..+|++..+|.+ +.++..|..|++.+|.+..+|+..-+++.|+.|+...
T Consensus 115 ~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~-~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~- 192 (565)
T KOG0472|consen 115 SLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPED-MVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNS- 192 (565)
T ss_pred hhhhhhccccceeecCchHHHHhhhhhhhccccccccCchH-HHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccch-
Confidence 45556666666665443 35666677777777777777776 5666677777777777777766655677777777766
Q ss_pred cccccCchhhhccCCCcEEEecCccccccchhhhccCCCCeeecccccccCccccCCCCCCcccchhhhhccccccceee
Q 001999 578 SLLFQLPKEIRYLQKLEILDVRHTRIQCLPSEIGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSNIISKLCLLEELII 657 (984)
Q Consensus 578 ~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~~L~~L~~L~l 657 (984)
+.++.+|+.++.+.+|+-|++++|++..+| +|..+..|..|+++ .+ ... .+|....+++.+|..|++
T Consensus 193 N~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g-----~N-~i~------~lpae~~~~L~~l~vLDL 259 (565)
T KOG0472|consen 193 NLLETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVG-----EN-QIE------MLPAEHLKHLNSLLVLDL 259 (565)
T ss_pred hhhhcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhc-----cc-HHH------hhHHHHhcccccceeeec
Confidence 346777777777777777777777777777 66677777777665 22 233 355554556666666666
Q ss_pred eecCCchhHHhhhhhhhHHHhhccCCCceEEEecCCcchhhh
Q 001999 658 EVLDPSDRRWKQNVESIAGEIAALEQLTTLHFYFPTIKCFKT 699 (984)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 699 (984)
... ...+++.++.-+++|..|+++.+++..++.
T Consensus 260 RdN---------klke~Pde~clLrsL~rLDlSNN~is~Lp~ 292 (565)
T KOG0472|consen 260 RDN---------KLKEVPDEICLLRSLERLDLSNNDISSLPY 292 (565)
T ss_pred ccc---------ccccCchHHHHhhhhhhhcccCCccccCCc
Confidence 532 234456666666667777776666655543
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.61 E-value=5.2e-17 Score=184.81 Aligned_cols=363 Identities=22% Similarity=0.320 Sum_probs=189.9
Q ss_pred CeEeeeccCCCCCCCC-CCCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCCcchhcccccCeEecCCCc
Q 001999 500 TKKLSLFGFPSSTLPD-MPNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLPPSISRLINLNALFLRSCS 578 (984)
Q Consensus 500 ~r~l~l~~~~~~~l~~-~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~ 578 (984)
+++|.+++|.+..+|. +..+.+|+.|.+++|.+.++|.+ ..++.+|++|.|.+|.+..+|.++..+++|++|++++|.
T Consensus 47 L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s-~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~ 125 (1081)
T KOG0618|consen 47 LKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSS-CSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNH 125 (1081)
T ss_pred eEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchh-hhhhhcchhheeccchhhcCchhHHhhhcccccccchhc
Confidence 5556666665555543 24455666666666666666544 555666666666666666666666666666666666532
Q ss_pred ccccCchhhhccC----------------------------------------CCcE-EEecCccccccchhhhc-----
Q 001999 579 LLFQLPKEIRYLQ----------------------------------------KLEI-LDVRHTRIQCLPSEIGQ----- 612 (984)
Q Consensus 579 ~l~~lp~~i~~L~----------------------------------------~L~~-L~l~~~~l~~lp~~~~~----- 612 (984)
....|..+..+. +|++ ||+++|.+..+ .+..
T Consensus 126 -f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~--dls~~~~l~ 202 (1081)
T KOG0618|consen 126 -FGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVL--DLSNLANLE 202 (1081)
T ss_pred -cCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhhhh--hhhhccchh
Confidence 333332222111 2333 66666654411 0111
Q ss_pred ---------------cCCCCeeecccccc----------------cCccccCCCCCCcccchhhhhccccccceeeeecC
Q 001999 613 ---------------LIKLKCLRVSWVEN----------------VGNHTHAGAWPGEMISSNIISKLCLLEELIIEVLD 661 (984)
Q Consensus 613 ---------------L~~L~~L~l~~~~~----------------~~~~~l~~~~~~~~ip~~~l~~L~~L~~L~l~~~~ 661 (984)
.++|++|+...+.- ++-+.+. .+| ..++.+.+|+.+.....
T Consensus 203 ~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~------~lp-~wi~~~~nle~l~~n~N- 274 (1081)
T KOG0618|consen 203 VLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLS------NLP-EWIGACANLEALNANHN- 274 (1081)
T ss_pred hhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhh------cch-HHHHhcccceEecccch-
Confidence 12334443332210 0111222 567 66888999998887642
Q ss_pred CchhHHhhhhhhhHHHhhccCCCceEEEecCCcchhhhhhhcccccCCCCCCCCCCcceeEEEecccCccceeccccccc
Q 001999 662 PSDRRWKQNVESIAGEIAALEQLTTLHFYFPTIKCFKTFINRRKSVNGNKSRHGDNFKSFNIVVGYPQSTSLLAGFDVSE 741 (984)
Q Consensus 662 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~l~~~~~p~ 741 (984)
...+.+..+...++|+.|.+..+....++.....
T Consensus 275 --------~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~-------------------------------------- 308 (1081)
T KOG0618|consen 275 --------RLVALPLRISRITSLVSLSAAYNELEYIPPFLEG-------------------------------------- 308 (1081)
T ss_pred --------hHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccc--------------------------------------
Confidence 2345666677777777777766554443322110
Q ss_pred cccccceEEc-cCCCCchhHHHHHhhh-ccceeeccccccccccccccccccccCeeEEcccCCceEEecCCCCCcccCC
Q 001999 742 WSAEKHLRFS-AGVEEIPGEFLTILKQ-AYSFELIGSQYAVNLSNFGVDNLVRLQACVIEDCNEMTSIIDGNHRGVVPFQ 819 (984)
Q Consensus 742 ~~~L~~L~l~-~~~~~l~~~~~~~l~~-L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~ 819 (984)
...|.+|.+. ++...++...+..+.- +..|.. .+..+..++.++-..++.|+.|.+.+. .+ .+.....+..|.
T Consensus 309 ~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~-s~n~l~~lp~~~e~~~~~Lq~LylanN-~L---td~c~p~l~~~~ 383 (1081)
T KOG0618|consen 309 LKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNV-SSNKLSTLPSYEENNHAALQELYLANN-HL---TDSCFPVLVNFK 383 (1081)
T ss_pred cceeeeeeehhccccccchHHHhhhhHHHHHHhh-hhccccccccccchhhHHHHHHHHhcC-cc---cccchhhhcccc
Confidence 0113344444 3444444432222221 222211 112233333334445666666666652 22 122222334467
Q ss_pred CcceeecccccccccccccccccCcccccceeeecccccccccCcHHHHhhcccccEEeecccchhHHHhhcCcccccCC
Q 001999 820 GLNNLHIKNLPKLMHIWVGPIASGSLNSLRTLRVKICHSIKTLFSKEMVAQLNELQDLQVEDCQMIEEIVEAGTVLAIGE 899 (984)
Q Consensus 820 ~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~ 899 (984)
+|+.|++++. .+..++.... ..++.|+.|+++++ +|+.+ +..+.+++.|+.|...+|..+ ..| .+..
T Consensus 384 hLKVLhLsyN-rL~~fpas~~--~kle~LeeL~LSGN-kL~~L--p~tva~~~~L~tL~ahsN~l~------~fP-e~~~ 450 (1081)
T KOG0618|consen 384 HLKVLHLSYN-RLNSFPASKL--RKLEELEELNLSGN-KLTTL--PDTVANLGRLHTLRAHSNQLL------SFP-ELAQ 450 (1081)
T ss_pred ceeeeeeccc-ccccCCHHHH--hchHHhHHHhcccc-hhhhh--hHHHHhhhhhHHHhhcCCcee------ech-hhhh
Confidence 7777777663 3443332221 36677778888887 77777 266777777877777665442 122 4556
Q ss_pred CCcccEeeccCCccccccCCCCccCCCCcceEeecccccc
Q 001999 900 FPKLKTLELIDLPKLSTICNSLLLPWPSLETIKIKACNAL 939 (984)
Q Consensus 900 ~~~L~~L~L~~c~~L~~i~~~~~~~l~sL~~L~i~~C~~L 939 (984)
+|.|+.++++. ++|+.+........|.|++|+++|+..+
T Consensus 451 l~qL~~lDlS~-N~L~~~~l~~~~p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 451 LPQLKVLDLSC-NNLSEVTLPEALPSPNLKYLDLSGNTRL 489 (1081)
T ss_pred cCcceEEeccc-chhhhhhhhhhCCCcccceeeccCCccc
Confidence 77777777774 6676655422334477888888777653
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.47 E-value=1.2e-15 Score=139.78 Aligned_cols=166 Identities=26% Similarity=0.372 Sum_probs=139.3
Q ss_pred CCCCCCCCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCCcchhcccccCeEecCCCcccccCchhhhcc
Q 001999 511 STLPDMPNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLPPSISRLINLNALFLRSCSLLFQLPKEIRYL 590 (984)
Q Consensus 511 ~~l~~~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L 590 (984)
..++.+..+.+++.|.++.|.+..+|+. +..+.+|++|++++|+++.+|.+|+.++.||.|++.- +.+..+|.++|.+
T Consensus 24 ~~~~gLf~~s~ITrLtLSHNKl~~vppn-ia~l~nlevln~~nnqie~lp~~issl~klr~lnvgm-nrl~~lprgfgs~ 101 (264)
T KOG0617|consen 24 EELPGLFNMSNITRLTLSHNKLTVVPPN-IAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGM-NRLNILPRGFGSF 101 (264)
T ss_pred hhcccccchhhhhhhhcccCceeecCCc-HHHhhhhhhhhcccchhhhcChhhhhchhhhheecch-hhhhcCccccCCC
Confidence 3456667788888899999999999988 8899999999999999999999999999999999976 5688899999999
Q ss_pred CCCcEEEecCcccc--ccchhhhccCCCCeeecccccccCccccCCCCCCcccchhhhhccccccceeeeecCCchhHHh
Q 001999 591 QKLEILDVRHTRIQ--CLPSEIGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSNIISKLCLLEELIIEVLDPSDRRWK 668 (984)
Q Consensus 591 ~~L~~L~l~~~~l~--~lp~~~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~~L~~L~~L~l~~~~~~~~~~~ 668 (984)
+-|++||+.+|++. .+|..+..++.|+-|+++ .+.. . .+|.+ +++|++||.|.+...+
T Consensus 102 p~levldltynnl~e~~lpgnff~m~tlralyl~-----dndf-e------~lp~d-vg~lt~lqil~lrdnd------- 161 (264)
T KOG0617|consen 102 PALEVLDLTYNNLNENSLPGNFFYMTTLRALYLG-----DNDF-E------ILPPD-VGKLTNLQILSLRDND------- 161 (264)
T ss_pred chhhhhhccccccccccCCcchhHHHHHHHHHhc-----CCCc-c------cCChh-hhhhcceeEEeeccCc-------
Confidence 99999999999876 789889999999999997 4443 2 46755 8999999999887532
Q ss_pred hhhhhhHHHhhccCCCceEEEecCCcchhhhh
Q 001999 669 QNVESIAGEIAALEQLTTLHFYFPTIKCFKTF 700 (984)
Q Consensus 669 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 700 (984)
.-..+.+++.+.+|++|+|..+....++.-
T Consensus 162 --ll~lpkeig~lt~lrelhiqgnrl~vlppe 191 (264)
T KOG0617|consen 162 --LLSLPKEIGDLTRLRELHIQGNRLTVLPPE 191 (264)
T ss_pred --hhhCcHHHHHHHHHHHHhcccceeeecChh
Confidence 445788899999999999998877666543
No 16
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.37 E-value=5.5e-13 Score=161.42 Aligned_cols=104 Identities=28% Similarity=0.331 Sum_probs=90.2
Q ss_pred ccCeEeeeccCC--CCCCCC--CCCcCceeEEEecCc-ccCCCcchHhhcCCCccEEeccCCCCccCCcchhcccccCeE
Q 001999 498 KDTKKLSLFGFP--SSTLPD--MPNCCEILTLIVEGR-RLEKLPMSFFEYMCHLQLLDLHDTSIRCLPPSISRLINLNAL 572 (984)
Q Consensus 498 ~~~r~l~l~~~~--~~~l~~--~~~~~~L~~L~l~~~-~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L 572 (984)
++++.|-+.+|. +..++. +..++.||+|++++| .+..+|.+ ++++-+||+|+|+++.+..+|.++++|+.|.||
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~-I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS-IGELVHLRYLDLSDTGISHLPSGLGNLKKLIYL 623 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChH-HhhhhhhhcccccCCCccccchHHHHHHhhhee
Confidence 368889888886 455555 678999999999954 56789988 899999999999999999999999999999999
Q ss_pred ecCCCcccccCchhhhccCCCcEEEecCcc
Q 001999 573 FLRSCSLLFQLPKEIRYLQKLEILDVRHTR 602 (984)
Q Consensus 573 ~L~~c~~l~~lp~~i~~L~~L~~L~l~~~~ 602 (984)
++..+..+..+|..+..|++|++|.+....
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred ccccccccccccchhhhcccccEEEeeccc
Confidence 999987777777777789999999998764
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.33 E-value=5e-12 Score=149.81 Aligned_cols=108 Identities=27% Similarity=0.234 Sum_probs=75.0
Q ss_pred CeEeeeccCCCCCCCCCCCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCCcchhcccccCeEecCCCcc
Q 001999 500 TKKLSLFGFPSSTLPDMPNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLPPSISRLINLNALFLRSCSL 579 (984)
Q Consensus 500 ~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~ 579 (984)
-..|.+.++.+..+|... .++|+.|.+.+|.++.+|.. +++|++|+|++|.++.+|.. ..+|+.|++++|.
T Consensus 203 ~~~LdLs~~~LtsLP~~l-~~~L~~L~L~~N~Lt~LP~l----p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~- 273 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCL-PAHITTLVIPDNNLTSLPAL----PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNP- 273 (788)
T ss_pred CcEEEcCCCCCCcCCcch-hcCCCEEEccCCcCCCCCCC----CCCCcEEEecCCccCcccCc---ccccceeeccCCc-
Confidence 345667777777666522 24678888888888877753 46788888888888877753 3567788887754
Q ss_pred cccCchhhhccCCCcEEEecCccccccchhhhccCCCCeeecc
Q 001999 580 LFQLPKEIRYLQKLEILDVRHTRIQCLPSEIGQLIKLKCLRVS 622 (984)
Q Consensus 580 l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~ 622 (984)
+..+|... .+|..|++++|+++.+|.. +++|+.|+++
T Consensus 274 L~~Lp~lp---~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS 310 (788)
T PRK15387 274 LTHLPALP---SGLCKLWIFGNQLTSLPVL---PPGLQELSVS 310 (788)
T ss_pred hhhhhhch---hhcCEEECcCCcccccccc---ccccceeECC
Confidence 66666532 5677788888888877753 4678888887
No 18
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.32 E-value=7e-14 Score=128.40 Aligned_cols=148 Identities=23% Similarity=0.372 Sum_probs=87.6
Q ss_pred ccCeEeeeccCCCCCCC-CCCCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCCcchhcccccCeEecCC
Q 001999 498 KDTKKLSLFGFPSSTLP-DMPNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLPPSISRLINLNALFLRS 576 (984)
Q Consensus 498 ~~~r~l~l~~~~~~~l~-~~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~ 576 (984)
+.++++.++.|++..+| ....+.+|++|++++|.++.+|.+ +++++.||.|+++-|.+..+|..+|.++-|+.|+|.+
T Consensus 33 s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~-issl~klr~lnvgmnrl~~lprgfgs~p~levldlty 111 (264)
T KOG0617|consen 33 SNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTS-ISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTY 111 (264)
T ss_pred hhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChh-hhhchhhhheecchhhhhcCccccCCCchhhhhhccc
Confidence 45556666666665543 345566666666666666666665 5666666666666666666666666666666666665
Q ss_pred Cccc-ccCchhhhccCCCcEEEecCccccccchhhhccCCCCeeecccccccCccccCCCCCCcccchhhhhccccccce
Q 001999 577 CSLL-FQLPKEIRYLQKLEILDVRHTRIQCLPSEIGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSNIISKLCLLEEL 655 (984)
Q Consensus 577 c~~l-~~lp~~i~~L~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~~L~~L~~L 655 (984)
|+.- ..+|..+..++.|+.|+++.|.++.+|..+++|++|+.|.+. .+..+. +|.. ++.|+.|++|
T Consensus 112 nnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lr-----dndll~-------lpke-ig~lt~lrel 178 (264)
T KOG0617|consen 112 NNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLR-----DNDLLS-------LPKE-IGDLTRLREL 178 (264)
T ss_pred cccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeec-----cCchhh-------CcHH-HHHHHHHHHH
Confidence 4311 135655666666666666666666666666666666666665 443332 5543 6666666666
Q ss_pred eeee
Q 001999 656 IIEV 659 (984)
Q Consensus 656 ~l~~ 659 (984)
.+.+
T Consensus 179 hiqg 182 (264)
T KOG0617|consen 179 HIQG 182 (264)
T ss_pred hccc
Confidence 5553
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.30 E-value=1e-11 Score=147.09 Aligned_cols=124 Identities=19% Similarity=0.160 Sum_probs=85.6
Q ss_pred cccCeeEEcccCCceEEecCCCCCcccCCCcceeecccccccccccccccccCcccccceeeecccccccccCcHHHHhh
Q 001999 791 VRLQACVIEDCNEMTSIIDGNHRGVVPFQGLNNLHIKNLPKLMHIWVGPIASGSLNSLRTLRVKICHSIKTLFSKEMVAQ 870 (984)
Q Consensus 791 ~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~l~~ 870 (984)
++|+.|++++ +.++.++.. +++|+.|.++++ .+..++. ..++|+.|+++++ .++.++. .
T Consensus 342 ~~Lq~LdLS~-N~Ls~LP~l-------p~~L~~L~Ls~N-~L~~LP~------l~~~L~~LdLs~N-~Lt~LP~-----l 400 (788)
T PRK15387 342 SGLQELSVSD-NQLASLPTL-------PSELYKLWAYNN-RLTSLPA------LPSGLKELIVSGN-RLTSLPV-----L 400 (788)
T ss_pred cccceEecCC-CccCCCCCC-------Ccccceehhhcc-ccccCcc------cccccceEEecCC-cccCCCC-----c
Confidence 4788888887 456555431 367888888764 3444321 2457999999998 7887732 2
Q ss_pred cccccEEeecccchhHHHhhcCcccccCCCCcccEeeccCCccccccCCCCccCCCCcceEeecccccccccCcCC
Q 001999 871 LNELQDLQVEDCQMIEEIVEAGTVLAIGEFPKLKTLELIDLPKLSTICNSLLLPWPSLETIKIKACNALKSFPSTF 946 (984)
Q Consensus 871 l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~L~~L~L~~c~~L~~i~~~~~~~l~sL~~L~i~~C~~L~~lp~~~ 946 (984)
.++|+.|++++|.. +. ++. .+.+|+.|++++ +.++.+|. .+..+++|+.|++++++--...|..+
T Consensus 401 ~s~L~~LdLS~N~L-ss-----IP~---l~~~L~~L~Ls~-NqLt~LP~-sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 401 PSELKELMVSGNRL-TS-----LPM---LPSGLLSLSVYR-NQLTRLPE-SLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred ccCCCEEEccCCcC-CC-----CCc---chhhhhhhhhcc-CcccccCh-HHhhccCCCeEECCCCCCCchHHHHH
Confidence 47899999999864 32 221 235788899988 56888887 67789999999999988433444444
No 20
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.30 E-value=3.2e-10 Score=144.32 Aligned_cols=290 Identities=13% Similarity=0.223 Sum_probs=183.1
Q ss_pred ccCCCCCCchHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCC-CCCHHHHHHHHHH
Q 001999 150 SRHASKFPSHKEYVETLEKHLSSGGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNT-DGNISDIQEIILE 228 (984)
Q Consensus 150 ~~~~~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~-~~~~~~i~~~i~~ 228 (984)
|+..+.++-|..-.+.+-+. ...+++.|+|++|.||||++.+..+. ++.++|+++.. .-+.......++.
T Consensus 10 p~~~~~~~~R~rl~~~l~~~---~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~ 80 (903)
T PRK04841 10 PVRLHNTVVRERLLAKLSGA---NNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIA 80 (903)
T ss_pred CCCccccCcchHHHHHHhcc---cCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHH
Confidence 34456677887666655321 46789999999999999999985532 12689999964 3466667677777
Q ss_pred HhccCcccc-------------ch-HHHHHHHHHHHc--CCcEEEEEECCCCccc--hh-hh--ccccCCCCcEEEEEcC
Q 001999 229 RLKVNAKEL-------------DN-AQRADNISKELK--DKRYVLFLDGVSSEIN--FK-EI--GIHDDHGRGKVVFACR 287 (984)
Q Consensus 229 ~l~~~~~~~-------------~~-~~~~~~l~~~L~--~kr~LlVlDdv~~~~~--~~-~~--~~~~~~~gs~ilvTTR 287 (984)
.++...... .. ......+...+. +.+++|||||+...++ .. .+ .++....+.++|||||
T Consensus 81 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR 160 (903)
T PRK04841 81 ALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSR 160 (903)
T ss_pred HHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeC
Confidence 764211110 01 223333333333 6799999999976431 11 11 2334456778989999
Q ss_pred Cccccc-----cCCceEEcc----CCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCCchHHHHHHHHhhcCccH
Q 001999 288 SREFCW-----QADDVIHVE----RLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGMPYMLKLIGKELVNQSEV 358 (984)
Q Consensus 288 ~~~v~~-----~~~~~~~l~----~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~~~~~l~~~~~~ 358 (984)
...-.. .......+. +|+.+|+.++|....+... -.+...+|.+.|+|.|+++..++..+......
T Consensus 161 ~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~-----~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~ 235 (903)
T PRK04841 161 NLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPI-----EAAESSRLCDDVEGWATALQLIALSARQNNSS 235 (903)
T ss_pred CCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCC-----CHHHHHHHHHHhCChHHHHHHHHHHHhhCCCc
Confidence 843211 123345555 9999999999988765431 23467889999999999999988777544110
Q ss_pred HHHHHHHHHhhcCCccccccHHHHHHHHH-HHHhcChHHHHHHHhhhcccCCCCccCHHHHHHHHhhcCCCCccCcccch
Q 001999 359 AIWRATVDDLRSTSSEEKKELEEVYRFFK-LVYKNLSSVQQHCLLGWAIFPTGLEISQDYIIDCWAAQKFLPRFGKIGDA 437 (984)
Q Consensus 359 ~~w~~~l~~l~~~~~~~~~~~~~i~~~l~-~sy~~L~~~~k~cfl~~s~fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~~ 437 (984)
. ......+.... ...+...+. -.++.||++.+..++..|+++. |+.+ +.. .+..
T Consensus 236 ~--~~~~~~~~~~~------~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~~---~~~~-l~~-----~l~~-------- 290 (903)
T PRK04841 236 L--HDSARRLAGIN------ASHLSDYLVEEVLDNVDLETRHFLLRCSVLRS---MNDA-LIV-----RVTG-------- 290 (903)
T ss_pred h--hhhhHhhcCCC------chhHHHHHHHHHHhcCCHHHHHHHHHhccccc---CCHH-HHH-----HHcC--------
Confidence 0 01111111000 122444433 3478999999999999999973 3322 221 1111
Q ss_pred hhHHHHHHHHHhhcccccc-cc-cccccchHHHHHHHHHHHhh
Q 001999 438 RDTGCLILDKFEKKSLLQK-QS-KEKRYKMIEFFQRAALRIAN 478 (984)
Q Consensus 438 ~~~~~~~~~~L~~~~ll~~-~~-~~~~~~mHdlv~~~a~~~~~ 478 (984)
.+.+...+++|.+++++.. .+ ...+|+.|+++++++.....
T Consensus 291 ~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~ 333 (903)
T PRK04841 291 EENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQ 333 (903)
T ss_pred CCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHHH
Confidence 2335678999999999653 33 23579999999999987753
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.28 E-value=8e-12 Score=149.16 Aligned_cols=113 Identities=24% Similarity=0.417 Sum_probs=85.2
Q ss_pred cCeEeeeccCCCCCCCCCCCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCCcchhcccccCeEecCCCc
Q 001999 499 DTKKLSLFGFPSSTLPDMPNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLPPSISRLINLNALFLRSCS 578 (984)
Q Consensus 499 ~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~ 578 (984)
+...+.+.++.+..+|.. -.++|+.|++++|.+..+|..++ .+|++|++++|.++.+|..+. .+|+.|+|++|.
T Consensus 179 ~~~~L~L~~~~LtsLP~~-Ip~~L~~L~Ls~N~LtsLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~ 252 (754)
T PRK15370 179 NKTELRLKILGLTTIPAC-IPEQITTLILDNNELKSLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELSINR 252 (754)
T ss_pred CceEEEeCCCCcCcCCcc-cccCCcEEEecCCCCCcCChhhc---cCCCEEECCCCccccCChhhh--ccccEEECcCCc
Confidence 345677777777777652 12578888888888888887643 478888888888888887654 478888888864
Q ss_pred ccccCchhhhccCCCcEEEecCccccccchhhhccCCCCeeecc
Q 001999 579 LLFQLPKEIRYLQKLEILDVRHTRIQCLPSEIGQLIKLKCLRVS 622 (984)
Q Consensus 579 ~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~ 622 (984)
+..+|..+. .+|++|++++|++..+|..+. .+|+.|+++
T Consensus 253 -L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls 291 (754)
T PRK15370 253 -ITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVY 291 (754)
T ss_pred -cCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECC
Confidence 667887765 578888888888888887654 478888887
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.22 E-value=7.7e-13 Score=137.46 Aligned_cols=127 Identities=22% Similarity=0.362 Sum_probs=107.1
Q ss_pred CceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccC-CcchhcccccCeEecCCCcccccCchh-hhccCCCcEEE
Q 001999 520 CEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCL-PPSISRLINLNALFLRSCSLLFQLPKE-IRYLQKLEILD 597 (984)
Q Consensus 520 ~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~c~~l~~lp~~-i~~L~~L~~L~ 597 (984)
+.-..+.|..|.++.+|+..|+.++.||.|||++|+|+.+ |..|..|..|-.|-+-++++++.+|.. +++|..|+.|.
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 3556788999999999999999999999999999999988 889999999999998887889999975 88999999999
Q ss_pred ecCccccccchh-hhccCCCCeeecccccccCccccCCCCCCcccchhhhhccccccceeee
Q 001999 598 VRHTRIQCLPSE-IGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSNIISKLCLLEELIIE 658 (984)
Q Consensus 598 l~~~~l~~lp~~-~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~~L~~L~~L~l~ 658 (984)
+.-|.+..++.. +..|++|..|.+. .+.. + .++.+.+..+..++++.+.
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLsly-----Dn~~-q------~i~~~tf~~l~~i~tlhlA 196 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLY-----DNKI-Q------SICKGTFQGLAAIKTLHLA 196 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhccc-----chhh-h------hhccccccchhccchHhhh
Confidence 999988866654 8889999999887 4433 3 4666667788888887765
No 23
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.15 E-value=5.4e-09 Score=112.55 Aligned_cols=177 Identities=18% Similarity=0.203 Sum_probs=114.7
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHHHHHhccCccccchHHHHHHHHHH---
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEIILERLKVNAKELDNAQRADNISKE--- 249 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~--- 249 (984)
....++.|+|++|+||||+++........ ..+ ...|+ +....+..+++..|+..++..............+...
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l~~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~ 117 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRLDQ-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIE 117 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhcCC-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHH
Confidence 44568999999999999999996665541 111 22333 3345678889999999987654433223333333332
Q ss_pred --HcCCcEEEEEECCCCcc--chhhhc-cc----cCCCCcEEEEEcCCccc---c-----c---cCCceEEccCCChHHH
Q 001999 250 --LKDKRYVLFLDGVSSEI--NFKEIG-IH----DDHGRGKVVFACRSREF---C-----W---QADDVIHVERLSPREA 309 (984)
Q Consensus 250 --L~~kr~LlVlDdv~~~~--~~~~~~-~~----~~~~gs~ilvTTR~~~v---~-----~---~~~~~~~l~~L~~~~~ 309 (984)
..+++.+||+||++... .++.+. +. .......|++|...... . . .....+.+.+++.+|.
T Consensus 118 ~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~ 197 (269)
T TIGR03015 118 QFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLDREET 197 (269)
T ss_pred HHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCCHHHH
Confidence 26788999999998753 334331 11 12223355555543211 0 0 2245788999999999
Q ss_pred HHHHHHHhCCCC-C-CCcchHHHHHHHHHHcCCCchHHHHHHHHh
Q 001999 310 KKLFWEVVGVNL-K-KNPDIEQEADSIVEECGGMPYMLKLIGKEL 352 (984)
Q Consensus 310 ~~Lf~~~~~~~~-~-~~~~l~~~~~~I~~~c~GlPlai~~~~~~l 352 (984)
.+++...+.... . ...-..+..+.|++.++|.|..|..++..+
T Consensus 198 ~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 198 REYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 999987764321 1 122235789999999999999999988876
No 24
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.14 E-value=8.8e-11 Score=140.35 Aligned_cols=115 Identities=19% Similarity=0.281 Sum_probs=88.6
Q ss_pred CceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCCcchhcccccCeEecCCCcccccCchhhhccCCCcEEEec
Q 001999 520 CEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLPPSISRLINLNALFLRSCSLLFQLPKEIRYLQKLEILDVR 599 (984)
Q Consensus 520 ~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~ 599 (984)
.+...|.+.++.++.+|..+ .++|+.|+|++|.++.+|..+. .+|++|++++|. ++.+|..+. .+|+.|+++
T Consensus 178 ~~~~~L~L~~~~LtsLP~~I---p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACI---PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQ-LTSIPATLP--DTIQEMELS 249 (754)
T ss_pred cCceEEEeCCCCcCcCCccc---ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCc-cccCChhhh--ccccEEECc
Confidence 35678999998999998763 3579999999999999998765 589999999864 788887664 479999999
Q ss_pred CccccccchhhhccCCCCeeecccccccCccccCCCCCCcccchhhhhccccccceeeee
Q 001999 600 HTRIQCLPSEIGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSNIISKLCLLEELIIEV 659 (984)
Q Consensus 600 ~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~~L~~L~~L~l~~ 659 (984)
+|++..+|..+. .+|+.|+++ ++. +. .+|.. + .++|+.|++++
T Consensus 250 ~N~L~~LP~~l~--s~L~~L~Ls-----~N~-L~------~LP~~-l--~~sL~~L~Ls~ 292 (754)
T PRK15370 250 INRITELPERLP--SALQSLDLF-----HNK-IS------CLPEN-L--PEELRYLSVYD 292 (754)
T ss_pred CCccCcCChhHh--CCCCEEECc-----CCc-cC------ccccc-c--CCCCcEEECCC
Confidence 999999998765 589999997 443 33 35543 2 13677777764
No 25
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.13 E-value=1.6e-08 Score=115.43 Aligned_cols=289 Identities=15% Similarity=0.176 Sum_probs=170.7
Q ss_pred CCCCCCchHHHHHHHHHHhcc----CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHHH
Q 001999 152 HASKFPSHKEYVETLEKHLSS----GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEIIL 227 (984)
Q Consensus 152 ~~~~~vgr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~ 227 (984)
.++.++||++++++|...+.+ .....+.|+|++|+|||++++.+.+..+.....-..+++++....+...++..|+
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~ 107 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIA 107 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHH
Confidence 346789999999999888743 3456688999999999999999766664212123466777776677888999999
Q ss_pred HHhccC-ccc--cchHHHHHHHHHHHc--CCcEEEEEECCCCcc------chhhh-ccccCCCCcE--EEEEcCCccccc
Q 001999 228 ERLKVN-AKE--LDNAQRADNISKELK--DKRYVLFLDGVSSEI------NFKEI-GIHDDHGRGK--VVFACRSREFCW 293 (984)
Q Consensus 228 ~~l~~~-~~~--~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~~------~~~~~-~~~~~~~gs~--ilvTTR~~~v~~ 293 (984)
+++... ... .+.++....+.+.++ ++..+||+|+++... .+..+ .......+++ +|.++....+..
T Consensus 108 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~~~ 187 (394)
T PRK00411 108 RQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTFLY 187 (394)
T ss_pred HHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcchhh
Confidence 998752 111 122566667777775 456899999998642 12222 1112223333 555555443221
Q ss_pred ---------cCCceEEccCCChHHHHHHHHHHhCCC----CCCCcchHHHHHHHHHHcCCCchHHHHHHHHh--h--c--
Q 001999 294 ---------QADDVIHVERLSPREAKKLFWEVVGVN----LKKNPDIEQEADSIVEECGGMPYMLKLIGKEL--V--N-- 354 (984)
Q Consensus 294 ---------~~~~~~~l~~L~~~~~~~Lf~~~~~~~----~~~~~~l~~~~~~I~~~c~GlPlai~~~~~~l--~--~-- 354 (984)
-....+.+.+++.++..+++...+... .-....++.+++......|..+.|+..+-.+. + .
T Consensus 188 ~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~ 267 (394)
T PRK00411 188 ILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGS 267 (394)
T ss_pred hcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCC
Confidence 123578999999999999998876432 11112223333333333455677776654322 1 1
Q ss_pred -CccHHHHHHHHHHhhcCCccccccHHHHHHHHHHHHhcChHHHHHHHhhhccc-CC-CCccCHHHHHHH--HhhcCCCC
Q 001999 355 -QSEVAIWRATVDDLRSTSSEEKKELEEVYRFFKLVYKNLSSVQQHCLLGWAIF-PT-GLEISQDYIIDC--WAAQKFLP 429 (984)
Q Consensus 355 -~~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~s~f-p~-~~~i~~~~Li~~--W~aeg~i~ 429 (984)
.-+.+..+.+.+.+. .....-.+..||.+.|..+..++.. .. ...+...++... .+++.+-.
T Consensus 268 ~~I~~~~v~~a~~~~~-------------~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~ 334 (394)
T PRK00411 268 RKVTEEDVRKAYEKSE-------------IVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGY 334 (394)
T ss_pred CCcCHHHHHHHHHHHH-------------HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCC
Confidence 134555555554431 1223445789999877665554422 21 134555555543 23322111
Q ss_pred ccCcccchhhHHHHHHHHHhhccccccc
Q 001999 430 RFGKIGDARDTGCLILDKFEKKSLLQKQ 457 (984)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~L~~~~ll~~~ 457 (984)
. .-.......|+++|...|+++..
T Consensus 335 ~----~~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 335 E----PRTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred C----cCcHHHHHHHHHHHHhcCCeEEE
Confidence 1 11224456689999999998753
No 26
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.12 E-value=2.9e-09 Score=116.77 Aligned_cols=270 Identities=14% Similarity=0.130 Sum_probs=159.1
Q ss_pred CCCCchHHHHHHHHHHhcc-----CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 001999 154 SKFPSHKEYVETLEKHLSS-----GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEIILE 228 (984)
Q Consensus 154 ~~~vgr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~ 228 (984)
.+|+|+++.++.|..++.. .....+.++|++|+|||+||+...+... ..+ ..+..+....... +...+.
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~--~~~---~~~~~~~~~~~~~-l~~~l~ 77 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMG--VNL---KITSGPALEKPGD-LAAILT 77 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhC--CCE---EEeccchhcCchh-HHHHHH
Confidence 4689999999999888863 3456788999999999999999776665 332 1222211112222 222233
Q ss_pred HhccCc----cccc--hHHHHHHHHHHHcCCcEEEEEECCCCccchhhhccccCCCCcEEEEEcCCccccc----cCCce
Q 001999 229 RLKVNA----KELD--NAQRADNISKELKDKRYVLFLDGVSSEINFKEIGIHDDHGRGKVVFACRSREFCW----QADDV 298 (984)
Q Consensus 229 ~l~~~~----~~~~--~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~~~~~~~gs~ilvTTR~~~v~~----~~~~~ 298 (984)
.++... ++.. .......+...+.+.+..+|+|+..+...+... ..+.+-|..|||...+.. .....
T Consensus 78 ~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~----~~~~~li~~t~~~~~l~~~l~sR~~~~ 153 (305)
T TIGR00635 78 NLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLD----LPPFTLVGATTRAGMLTSPLRDRFGII 153 (305)
T ss_pred hcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeec----CCCeEEEEecCCccccCHHHHhhcceE
Confidence 332211 0000 133345566667777777888876655444321 123556667787765544 34467
Q ss_pred EEccCCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCCchHHHHHHHHhhcCccHHHHHHHHHHhhcCCcccccc
Q 001999 299 IHVERLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGMPYMLKLIGKELVNQSEVAIWRATVDDLRSTSSEEKKE 378 (984)
Q Consensus 299 ~~l~~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~~~~~l~~~~~~~~w~~~l~~l~~~~~~~~~~ 378 (984)
+.+.+++.++..+++.+.+.... ..--.+....|++.|+|.|-.+..++..+ |..+.. ...... ..+.
T Consensus 154 ~~l~~l~~~e~~~il~~~~~~~~--~~~~~~al~~ia~~~~G~pR~~~~ll~~~--------~~~a~~-~~~~~i-t~~~ 221 (305)
T TIGR00635 154 LRLEFYTVEELAEIVSRSAGLLN--VEIEPEAALEIARRSRGTPRIANRLLRRV--------RDFAQV-RGQKII-NRDI 221 (305)
T ss_pred EEeCCCCHHHHHHHHHHHHHHhC--CCcCHHHHHHHHHHhCCCcchHHHHHHHH--------HHHHHH-cCCCCc-CHHH
Confidence 89999999999999998876431 11224577899999999997665554432 111110 010000 1112
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHh-hhcccCCCCccCHHHHHHHHhhcCCCCccCcccchhhHHHHHHH-HHhhcccccc
Q 001999 379 LEEVYRFFKLVYKNLSSVQQHCLL-GWAIFPTGLEISQDYIIDCWAAQKFLPRFGKIGDARDTGCLILD-KFEKKSLLQK 456 (984)
Q Consensus 379 ~~~i~~~l~~sy~~L~~~~k~cfl-~~s~fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~~~~~~~~~~~-~L~~~~ll~~ 456 (984)
...+...+..+|..++++.+..+. ..+.++.+ .+..+.+-... ......++..++ .|++++|++.
T Consensus 222 v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l------------g~~~~~~~~~~e~~Li~~~li~~ 288 (305)
T TIGR00635 222 ALKALEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL------------GEDADTIEDVYEPYLLQIGFLQR 288 (305)
T ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh------------CCCcchHHHhhhHHHHHcCCccc
Confidence 233344456678888888777665 55666544 44444433221 112345666778 6999999986
Q ss_pred cc
Q 001999 457 QS 458 (984)
Q Consensus 457 ~~ 458 (984)
..
T Consensus 289 ~~ 290 (305)
T TIGR00635 289 TP 290 (305)
T ss_pred CC
Confidence 54
No 27
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.06 E-value=8.1e-09 Score=113.93 Aligned_cols=272 Identities=14% Similarity=0.132 Sum_probs=157.3
Q ss_pred CCCCCCchHHHHHHHHHHhcc-----CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHH
Q 001999 152 HASKFPSHKEYVETLEKHLSS-----GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEII 226 (984)
Q Consensus 152 ~~~~~vgr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i 226 (984)
...+|+|+++.++.+..++.. .....+.|+|++|+||||+|+...+... ..+ .++..+ ..+....+..+
T Consensus 23 ~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~--~~~---~~~~~~-~~~~~~~l~~~ 96 (328)
T PRK00080 23 SLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMG--VNI---RITSGP-ALEKPGDLAAI 96 (328)
T ss_pred CHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhC--CCe---EEEecc-cccChHHHHHH
Confidence 346799999999998877752 3456788999999999999999777765 332 112211 11212223333
Q ss_pred HHHhccCc----cccc--hHHHHHHHHHHHcCCcEEEEEECCCCccchhhhccccCCCCcEEEEEcCCccccc----cCC
Q 001999 227 LERLKVNA----KELD--NAQRADNISKELKDKRYVLFLDGVSSEINFKEIGIHDDHGRGKVVFACRSREFCW----QAD 296 (984)
Q Consensus 227 ~~~l~~~~----~~~~--~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~~~~~~~gs~ilvTTR~~~v~~----~~~ 296 (984)
+..+.... ++.. .....+.+...+.+.+..+|+|+..+...+.. ...+.+-|..|||...+.. ...
T Consensus 97 l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~----~l~~~~li~at~~~~~l~~~L~sRf~ 172 (328)
T PRK00080 97 LTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRL----DLPPFTLIGATTRAGLLTSPLRDRFG 172 (328)
T ss_pred HHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceee----cCCCceEEeecCCcccCCHHHHHhcC
Confidence 33332211 0000 02223334455555666666666544322111 1122455667777665543 345
Q ss_pred ceEEccCCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCCchHHHHHHHHhhcCccHHHHHHHHHHhhcCCcccc
Q 001999 297 DVIHVERLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGMPYMLKLIGKELVNQSEVAIWRATVDDLRSTSSEEK 376 (984)
Q Consensus 297 ~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~~~~~l~~~~~~~~w~~~l~~l~~~~~~~~ 376 (984)
..+++++++.++..+++.+.+.... ..--++....|++.|+|.|-.+..+...+ ..|....+ ......
T Consensus 173 ~~~~l~~~~~~e~~~il~~~~~~~~--~~~~~~~~~~ia~~~~G~pR~a~~~l~~~------~~~a~~~~----~~~I~~ 240 (328)
T PRK00080 173 IVQRLEFYTVEELEKIVKRSARILG--VEIDEEGALEIARRSRGTPRIANRLLRRV------RDFAQVKG----DGVITK 240 (328)
T ss_pred eeeecCCCCHHHHHHHHHHHHHHcC--CCcCHHHHHHHHHHcCCCchHHHHHHHHH------HHHHHHcC----CCCCCH
Confidence 6789999999999999998877541 12224578999999999996554444422 22222110 000012
Q ss_pred ccHHHHHHHHHHHHhcChHHHHHHHh-hhcccCCCCccCHHHHHHHHhhcCCCCccCcccchhhHHHHHHH-HHhhcccc
Q 001999 377 KELEEVYRFFKLVYKNLSSVQQHCLL-GWAIFPTGLEISQDYIIDCWAAQKFLPRFGKIGDARDTGCLILD-KFEKKSLL 454 (984)
Q Consensus 377 ~~~~~i~~~l~~sy~~L~~~~k~cfl-~~s~fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~~~~~~~~~~~-~L~~~~ll 454 (984)
.........+...|..|++..+..+. ....|+.+ .+..+.+-... - ...+.++..++ .|++.+|+
T Consensus 241 ~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l-----g-------~~~~~~~~~~e~~Li~~~li 307 (328)
T PRK00080 241 EIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL-----G-------EERDTIEDVYEPYLIQQGFI 307 (328)
T ss_pred HHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH-----C-------CCcchHHHHhhHHHHHcCCc
Confidence 22334555566778888888777664 66677765 45555543222 1 11244555566 89999999
Q ss_pred cccc
Q 001999 455 QKQS 458 (984)
Q Consensus 455 ~~~~ 458 (984)
+...
T Consensus 308 ~~~~ 311 (328)
T PRK00080 308 QRTP 311 (328)
T ss_pred ccCC
Confidence 8654
No 28
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.04 E-value=8.8e-08 Score=108.13 Aligned_cols=288 Identities=11% Similarity=0.129 Sum_probs=169.8
Q ss_pred CCCCCchHHHHHHHHHHhcc----CCccEEEEEcCCCChHHHHHHHhhhhcccC-CCC---CeEEEEEeCCCCCHHHHHH
Q 001999 153 ASKFPSHKEYVETLEKHLSS----GGLKKICICGPLGVGKTTIMENSHDSVGES-GRF---DIIFWVNVNTDGNISDIQE 224 (984)
Q Consensus 153 ~~~~vgr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~-~~F---~~~~wv~vs~~~~~~~i~~ 224 (984)
++.++||++++++|..++.+ .....+.|+|++|+|||++++.+.+.+... ... -..+|+......+...++.
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~ 93 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLV 93 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHH
Confidence 35799999999999998864 345679999999999999999965544310 111 1456777777677788999
Q ss_pred HHHHHhc---cCccc--cchHHHHHHHHHHHc--CCcEEEEEECCCCcc-c----hhhh-cc--ccCC--CCcEEEEEcC
Q 001999 225 IILERLK---VNAKE--LDNAQRADNISKELK--DKRYVLFLDGVSSEI-N----FKEI-GI--HDDH--GRGKVVFACR 287 (984)
Q Consensus 225 ~i~~~l~---~~~~~--~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~~-~----~~~~-~~--~~~~--~gs~ilvTTR 287 (984)
.|++++. ...+. .+.++....+.+.+. +++++||||+++... . +..+ .+ .... ....+|++|.
T Consensus 94 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n 173 (365)
T TIGR02928 94 ELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISN 173 (365)
T ss_pred HHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEEC
Confidence 9999883 22221 122455566666664 568899999998651 1 1111 11 1111 2234444444
Q ss_pred Cccc----cc-----cCCceEEccCCChHHHHHHHHHHhCCC---CCCCcchHHHHHHHHHHcCCCchHHHHHHH-Hh--
Q 001999 288 SREF----CW-----QADDVIHVERLSPREAKKLFWEVVGVN---LKKNPDIEQEADSIVEECGGMPYMLKLIGK-EL-- 352 (984)
Q Consensus 288 ~~~v----~~-----~~~~~~~l~~L~~~~~~~Lf~~~~~~~---~~~~~~l~~~~~~I~~~c~GlPlai~~~~~-~l-- 352 (984)
.... .. -....+.+++++.++..+++..++... ....++..+...+++....|.|-.+..+.. +.
T Consensus 174 ~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~ 253 (365)
T TIGR02928 174 DLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEI 253 (365)
T ss_pred CcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 3322 11 113568999999999999999886421 112333334555667777898854433222 11
Q ss_pred h--c---CccHHHHHHHHHHhhcCCccccccHHHHHHHHHHHHhcChHHHHHHHhhhccc--CCCCccCHHHHHHHH--h
Q 001999 353 V--N---QSEVAIWRATVDDLRSTSSEEKKELEEVYRFFKLVYKNLSSVQQHCLLGWAIF--PTGLEISQDYIIDCW--A 423 (984)
Q Consensus 353 ~--~---~~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~s~f--p~~~~i~~~~Li~~W--~ 423 (984)
+ . .-+.+..+.+.+.+. .....-++..||.+.|..+..++.. .++..+...++...+ +
T Consensus 254 a~~~~~~~it~~~v~~a~~~~~-------------~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~ 320 (365)
T TIGR02928 254 AEREGAERVTEDHVEKAQEKIE-------------KDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEV 320 (365)
T ss_pred HHHcCCCCCCHHHHHHHHHHHH-------------HHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Confidence 1 1 133444444443321 1223446678998877655554421 134456667666643 1
Q ss_pred hcCCCCccCcccchhhHHHHHHHHHhhccccccc
Q 001999 424 AQKFLPRFGKIGDARDTGCLILDKFEKKSLLQKQ 457 (984)
Q Consensus 424 aeg~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~~ 457 (984)
++.+ .. ....+.....+++.|...|++...
T Consensus 321 ~~~~-~~---~~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 321 CEDI-GV---DPLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred HHhc-CC---CCCcHHHHHHHHHHHHhcCCeEEE
Confidence 2211 11 122346677888999999998764
No 29
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.98 E-value=3e-11 Score=126.94 Aligned_cols=151 Identities=16% Similarity=0.158 Sum_probs=93.6
Q ss_pred ccccCeeEEcccCCceEEecCCCCCcccCCCcceeecccccccccccccccccCcccccceeeecccccccccCcHHHHh
Q 001999 790 LVRLQACVIEDCNEMTSIIDGNHRGVVPFQGLNNLHIKNLPKLMHIWVGPIASGSLNSLRTLRVKICHSIKTLFSKEMVA 869 (984)
Q Consensus 790 l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~l~ 869 (984)
+..|+.|..++|..+....... .....++|+.|.+.+|.++.+.-..... .+.+.|+.+++..|....+........
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~a--Lg~~~~~L~~l~l~~c~~fsd~~ft~l~-rn~~~Le~l~~e~~~~~~d~tL~sls~ 369 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWA--LGQHCHNLQVLELSGCQQFSDRGFTMLG-RNCPHLERLDLEECGLITDGTLASLSR 369 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHH--HhcCCCceEEEeccccchhhhhhhhhhh-cCChhhhhhcccccceehhhhHhhhcc
Confidence 5566777777766643322111 0112367777777777766554222222 356788888888885554441223345
Q ss_pred hcccccEEeecccchhHHHhhcCcccccCCCCcccEeeccCCccccccCCCCccCCCCcceEeecccccccccC
Q 001999 870 QLNELQDLQVEDCQMIEEIVEAGTVLAIGEFPKLKTLELIDLPKLSTICNSLLLPWPSLETIKIKACNALKSFP 943 (984)
Q Consensus 870 ~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~L~~L~L~~c~~L~~i~~~~~~~l~sL~~L~i~~C~~L~~lp 943 (984)
++|.|+.|.+++|+.++.-.-..+.........|..|.|++||.+++-.-.....+++|+.+++.+|...++-|
T Consensus 370 ~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~ 443 (483)
T KOG4341|consen 370 NCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEA 443 (483)
T ss_pred CCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhh
Confidence 78888888888888776431112233445677888888888887766433345667888888888888777654
No 30
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.97 E-value=2.2e-10 Score=127.01 Aligned_cols=140 Identities=19% Similarity=0.185 Sum_probs=72.7
Q ss_pred hhcCCCccEEeccCCCCc-----cCCcchhcccccCeEecCCCccc------ccCchhhhccCCCcEEEecCcccc-ccc
Q 001999 540 FEYMCHLQLLDLHDTSIR-----CLPPSISRLINLNALFLRSCSLL------FQLPKEIRYLQKLEILDVRHTRIQ-CLP 607 (984)
Q Consensus 540 ~~~l~~Lr~L~L~~~~i~-----~lp~~i~~l~~L~~L~L~~c~~l------~~lp~~i~~L~~L~~L~l~~~~l~-~lp 607 (984)
|..+..|++|+++++.++ .++..+...++|++|+++++..- ..++..+.++++|+.|++++|.+. ..+
T Consensus 19 ~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 98 (319)
T cd00116 19 LPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGC 98 (319)
T ss_pred HHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHH
Confidence 556666777777777663 24444555666777777664321 123344556667777777777665 344
Q ss_pred hhhhccCC---CCeeecccccccCccccCCCCCCcccchhhhhcc-ccccceeeeecCCchhHHhhhhhhhHHHhhccCC
Q 001999 608 SEIGQLIK---LKCLRVSWVENVGNHTHAGAWPGEMISSNIISKL-CLLEELIIEVLDPSDRRWKQNVESIAGEIAALEQ 683 (984)
Q Consensus 608 ~~~~~L~~---L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~~L-~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~ 683 (984)
..+..+.+ |++|+++ ++.... .+.......+..+ ++|++|++.++..... ........+..+++
T Consensus 99 ~~~~~l~~~~~L~~L~ls-----~~~~~~---~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~----~~~~~~~~~~~~~~ 166 (319)
T cd00116 99 GVLESLLRSSSLQELKLN-----NNGLGD---RGLRLLAKGLKDLPPALEKLVLGRNRLEGA----SCEALAKALRANRD 166 (319)
T ss_pred HHHHHHhccCcccEEEee-----CCccch---HHHHHHHHHHHhCCCCceEEEcCCCcCCch----HHHHHHHHHHhCCC
Confidence 44444444 7777776 332110 0000001123444 5666666665444321 12234445555666
Q ss_pred CceEEEec
Q 001999 684 LTTLHFYF 691 (984)
Q Consensus 684 L~~L~l~~ 691 (984)
|+.|+++.
T Consensus 167 L~~L~l~~ 174 (319)
T cd00116 167 LKELNLAN 174 (319)
T ss_pred cCEEECcC
Confidence 66666653
No 31
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.95 E-value=3.5e-09 Score=111.47 Aligned_cols=187 Identities=20% Similarity=0.294 Sum_probs=100.6
Q ss_pred CCchHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHH---------
Q 001999 156 FPSHKEYVETLEKHLSSGGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEII--------- 226 (984)
Q Consensus 156 ~vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i--------- 226 (984)
|+||++++++|.+++..+....+.|+|+.|+|||+|++...+..+. ..+ ..+|+...+..... ....+
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~-~~~-~~~y~~~~~~~~~~-~~~~~~~~~~~~~~ 77 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKE-KGY-KVVYIDFLEESNES-SLRSFIEETSLADE 77 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT---EE-CCCHHCCTTBSHHH-HHHHHHHHHHHHCH
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhh-cCC-cEEEEecccchhhh-HHHHHHHHHHHHHH
Confidence 6899999999999998877899999999999999999996666541 112 34444444433222 22222
Q ss_pred -HHHhccCcc----------ccch-HHHHHHHHHHHc--CCcEEEEEECCCCcc-ch---hhh------ccc---cCCCC
Q 001999 227 -LERLKVNAK----------ELDN-AQRADNISKELK--DKRYVLFLDGVSSEI-NF---KEI------GIH---DDHGR 279 (984)
Q Consensus 227 -~~~l~~~~~----------~~~~-~~~~~~l~~~L~--~kr~LlVlDdv~~~~-~~---~~~------~~~---~~~~g 279 (984)
.+.+..... .... ......+.+.+. +++++||+||+.... .. ..+ .+. ...+.
T Consensus 78 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 157 (234)
T PF01637_consen 78 LSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNV 157 (234)
T ss_dssp CHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTE
T ss_pred HHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCc
Confidence 111211110 0011 233334444443 356999999997655 11 111 111 23333
Q ss_pred cEEEEEcCCccccc----------cCCceEEccCCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCCchHHHH
Q 001999 280 GKVVFACRSREFCW----------QADDVIHVERLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGMPYMLKL 347 (984)
Q Consensus 280 s~ilvTTR~~~v~~----------~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~ 347 (984)
+.|+++|. ..... +....+.+++|+.+++++++...+...... +.-++..++|+..+||.|..|..
T Consensus 158 ~~v~~~S~-~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 158 SIVITGSS-DSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKELIKL-PFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEEEEESS-HHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHHH
T ss_pred eEEEECCc-hHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHhhcc-cCCHHHHHHHHHHhCCCHHHHhc
Confidence 44444443 22210 444559999999999999999976544111 22355679999999999988754
No 32
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.94 E-value=5.3e-08 Score=112.30 Aligned_cols=290 Identities=14% Similarity=0.244 Sum_probs=189.8
Q ss_pred cCCCCCCchHHHHHHHHHHhcc-CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCC-CCHHHHHHHHHH
Q 001999 151 RHASKFPSHKEYVETLEKHLSS-GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTD-GNISDIQEIILE 228 (984)
Q Consensus 151 ~~~~~~vgr~~~~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~-~~~~~i~~~i~~ 228 (984)
.++.+.|-|..-.+. |.+ .+.+.+.|..++|.|||||+-+...+. ..=..+.|.+.... -|+.+....++.
T Consensus 16 ~~~~~~v~R~rL~~~----L~~~~~~RL~li~APAGfGKttl~aq~~~~~---~~~~~v~Wlslde~dndp~rF~~yLi~ 88 (894)
T COG2909 16 VRPDNYVVRPRLLDR----LRRANDYRLILISAPAGFGKTTLLAQWRELA---ADGAAVAWLSLDESDNDPARFLSYLIA 88 (894)
T ss_pred CCcccccccHHHHHH----HhcCCCceEEEEeCCCCCcHHHHHHHHHHhc---CcccceeEeecCCccCCHHHHHHHHHH
Confidence 344556666655554 444 478999999999999999999965543 23346899998765 467888888888
Q ss_pred HhccCccccch--------------HHHHHHHHHHHc--CCcEEEEEECCCCccc--h-hhh--ccccCCCCcEEEEEcC
Q 001999 229 RLKVNAKELDN--------------AQRADNISKELK--DKRYVLFLDGVSSEIN--F-KEI--GIHDDHGRGKVVFACR 287 (984)
Q Consensus 229 ~l~~~~~~~~~--------------~~~~~~l~~~L~--~kr~LlVlDdv~~~~~--~-~~~--~~~~~~~gs~ilvTTR 287 (984)
+++.-.+...+ ..+...+...+. .++..+||||..-..+ . ..+ .+.....+-..|||||
T Consensus 89 al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR 168 (894)
T COG2909 89 ALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSR 168 (894)
T ss_pred HHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEec
Confidence 87643322211 223333333333 4689999999754321 1 111 2335667889999999
Q ss_pred Cccccc-----cCCceEEcc----CCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCCchHHHHHHHHhhcCccH
Q 001999 288 SREFCW-----QADDVIHVE----RLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGMPYMLKLIGKELVNQSEV 358 (984)
Q Consensus 288 ~~~v~~-----~~~~~~~l~----~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~~~~~l~~~~~~ 358 (984)
+.--.. -.....+++ .++.+|+-++|....+... -+.-.+.+.+..+|-+-|+..++=.+++..+.
T Consensus 169 ~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~L-----d~~~~~~L~~~teGW~~al~L~aLa~~~~~~~ 243 (894)
T COG2909 169 SRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPL-----DAADLKALYDRTEGWAAALQLIALALRNNTSA 243 (894)
T ss_pred cCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCC-----ChHHHHHHHhhcccHHHHHHHHHHHccCCCcH
Confidence 975443 222334443 4889999999988754331 23457889999999999999998888844343
Q ss_pred HHHHHHHHHhhcCCccccccHHHHHHH-HHHHHhcChHHHHHHHhhhcccCCCCccCHHHHHHHHhhcCCCCccCcccch
Q 001999 359 AIWRATVDDLRSTSSEEKKELEEVYRF-FKLVYKNLSSVQQHCLLGWAIFPTGLEISQDYIIDCWAAQKFLPRFGKIGDA 437 (984)
Q Consensus 359 ~~w~~~l~~l~~~~~~~~~~~~~i~~~-l~~sy~~L~~~~k~cfl~~s~fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~~ 437 (984)
+.--..+.... +.+..- ..=-++.||+++|..++-||+++.= -+.|++. -+-
T Consensus 244 ~q~~~~LsG~~----------~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~f----~~eL~~~-------------Ltg 296 (894)
T COG2909 244 EQSLRGLSGAA----------SHLSDYLVEEVLDRLPPELRDFLLQTSVLSRF----NDELCNA-------------LTG 296 (894)
T ss_pred HHHhhhccchH----------HHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh----hHHHHHH-------------Hhc
Confidence 33222221100 011111 1223689999999999999998761 1233322 223
Q ss_pred hhHHHHHHHHHhhccccc-ccc-cccccchHHHHHHHHHHHhhh
Q 001999 438 RDTGCLILDKFEKKSLLQ-KQS-KEKRYKMIEFFQRAALRIANE 479 (984)
Q Consensus 438 ~~~~~~~~~~L~~~~ll~-~~~-~~~~~~mHdlv~~~a~~~~~~ 479 (984)
++.|..++++|.+++|+- +-+ ...+|+.|.++.||...-...
T Consensus 297 ~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 297 EENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred CCcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhcc
Confidence 466888999999999875 433 377999999999999876655
No 33
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.89 E-value=7.5e-10 Score=122.70 Aligned_cols=130 Identities=20% Similarity=0.173 Sum_probs=77.0
Q ss_pred EEeccCCCCc--cCCcchhcccccCeEecCCCcc----cccCchhhhccCCCcEEEecCccccc-------cchhhhccC
Q 001999 548 LLDLHDTSIR--CLPPSISRLINLNALFLRSCSL----LFQLPKEIRYLQKLEILDVRHTRIQC-------LPSEIGQLI 614 (984)
Q Consensus 548 ~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~c~~----l~~lp~~i~~L~~L~~L~l~~~~l~~-------lp~~~~~L~ 614 (984)
.|+|.++.++ ..+..+..+.+|+.|++++|.. ...++..+...++|++|+++++.+.. ++..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 3566666664 3455567778899999988752 12355666777788888888876552 334566777
Q ss_pred CCCeeecccccccCccccCCCCCCcccchhhhhcccc---ccceeeeecCCchhHHhhhhhhhHHHhhcc-CCCceEEEe
Q 001999 615 KLKCLRVSWVENVGNHTHAGAWPGEMISSNIISKLCL---LEELIIEVLDPSDRRWKQNVESIAGEIAAL-EQLTTLHFY 690 (984)
Q Consensus 615 ~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~~L~~---L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~ 690 (984)
+|+.|+++ ++.... ..+ ..+..+.. |++|++..+..... ........+..+ ++|+.|+++
T Consensus 82 ~L~~L~l~-----~~~~~~------~~~-~~~~~l~~~~~L~~L~ls~~~~~~~----~~~~l~~~l~~~~~~L~~L~L~ 145 (319)
T cd00116 82 GLQELDLS-----DNALGP------DGC-GVLESLLRSSSLQELKLNNNGLGDR----GLRLLAKGLKDLPPALEKLVLG 145 (319)
T ss_pred ceeEEEcc-----CCCCCh------hHH-HHHHHHhccCcccEEEeeCCccchH----HHHHHHHHHHhCCCCceEEEcC
Confidence 88888887 443221 111 22444444 77777776443311 122233445555 677777776
Q ss_pred cCC
Q 001999 691 FPT 693 (984)
Q Consensus 691 ~~~ 693 (984)
.+.
T Consensus 146 ~n~ 148 (319)
T cd00116 146 RNR 148 (319)
T ss_pred CCc
Confidence 443
No 34
>PF05729 NACHT: NACHT domain
Probab=98.83 E-value=2.7e-08 Score=98.45 Aligned_cols=137 Identities=18% Similarity=0.338 Sum_probs=87.9
Q ss_pred cEEEEEcCCCChHHHHHHHhhhhcccCCC----CCeEEEEEeCCCCCHH---HHHHHHHHHhccCccccchHHHHHHHHH
Q 001999 176 KKICICGPLGVGKTTIMENSHDSVGESGR----FDIIFWVNVNTDGNIS---DIQEIILERLKVNAKELDNAQRADNISK 248 (984)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~----F~~~~wv~vs~~~~~~---~i~~~i~~~l~~~~~~~~~~~~~~~l~~ 248 (984)
+++.|+|.+|+||||+++........... +...+|++.....+.. .+...|..+........ .. .+..
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~--~~---~~~~ 75 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPI--EE---LLQE 75 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhh--HH---HHHH
Confidence 58899999999999999995544432222 4567777766644332 34444444432221111 11 2222
Q ss_pred H-HcCCcEEEEEECCCCccc---------hhhh---ccc-cCCCCcEEEEEcCCccccc-----cCCceEEccCCChHHH
Q 001999 249 E-LKDKRYVLFLDGVSSEIN---------FKEI---GIH-DDHGRGKVVFACRSREFCW-----QADDVIHVERLSPREA 309 (984)
Q Consensus 249 ~-L~~kr~LlVlDdv~~~~~---------~~~~---~~~-~~~~gs~ilvTTR~~~v~~-----~~~~~~~l~~L~~~~~ 309 (984)
. -+.+++++|+|++++... +..+ .++ ...++.+++||||...... .....+.+.+|++++.
T Consensus 76 ~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~ 155 (166)
T PF05729_consen 76 LLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDI 155 (166)
T ss_pred HHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHH
Confidence 2 257899999999976432 1111 122 2467899999999987733 4446899999999999
Q ss_pred HHHHHHHh
Q 001999 310 KKLFWEVV 317 (984)
Q Consensus 310 ~~Lf~~~~ 317 (984)
.+++.++.
T Consensus 156 ~~~~~~~f 163 (166)
T PF05729_consen 156 KQYLRKYF 163 (166)
T ss_pred HHHHHHHh
Confidence 99998765
No 35
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.80 E-value=3.8e-07 Score=96.81 Aligned_cols=225 Identities=13% Similarity=0.157 Sum_probs=139.8
Q ss_pred ccCCCCCCchHHHH---HHHHHHhccCCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHH
Q 001999 150 SRHASKFPSHKEYV---ETLEKHLSSGGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEII 226 (984)
Q Consensus 150 ~~~~~~~vgr~~~~---~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i 226 (984)
|....++||.++-+ .-|..++..+.+.-.-.||++|+||||||+....... ..| ..+|...+-.+=+++|
T Consensus 20 P~~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~--~~f-----~~~sAv~~gvkdlr~i 92 (436)
T COG2256 20 PKSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTN--AAF-----EALSAVTSGVKDLREI 92 (436)
T ss_pred CCCHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhC--Cce-----EEeccccccHHHHHHH
Confidence 44456788887765 3355677778888899999999999999999777766 554 3444444333333333
Q ss_pred HHHhccCccccchHHHHHHHHHHHcCCcEEEEEECCCCccc-hhhhccccCCCCcEEEE--EcCCccccc-----cCCce
Q 001999 227 LERLKVNAKELDNAQRADNISKELKDKRYVLFLDGVSSEIN-FKEIGIHDDHGRGKVVF--ACRSREFCW-----QADDV 298 (984)
Q Consensus 227 ~~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~-~~~~~~~~~~~gs~ilv--TTR~~~v~~-----~~~~~ 298 (984)
++... +....|++.+|++|.|..-.. -....+|.-..|.-|+| ||-+....- ....+
T Consensus 93 ~e~a~---------------~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE~G~iilIGATTENPsF~ln~ALlSR~~v 157 (436)
T COG2256 93 IEEAR---------------KNRLLGRRTILFLDEIHRFNKAQQDALLPHVENGTIILIGATTENPSFELNPALLSRARV 157 (436)
T ss_pred HHHHH---------------HHHhcCCceEEEEehhhhcChhhhhhhhhhhcCCeEEEEeccCCCCCeeecHHHhhhhhe
Confidence 33211 122348999999999976432 23345787788888887 565554422 77889
Q ss_pred EEccCCChHHHHHHHHHHhCCCC----CCCcch-HHHHHHHHHHcCCCchHHHHHHHH---hhcC---ccHHHHHHHHHH
Q 001999 299 IHVERLSPREAKKLFWEVVGVNL----KKNPDI-EQEADSIVEECGGMPYMLKLIGKE---LVNQ---SEVAIWRATVDD 367 (984)
Q Consensus 299 ~~l~~L~~~~~~~Lf~~~~~~~~----~~~~~l-~~~~~~I~~~c~GlPlai~~~~~~---l~~~---~~~~~w~~~l~~ 367 (984)
+.+++|+.++-..++++.+.... .....+ ++....+++.++|---++-..... +... ...+..++.++.
T Consensus 158 f~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l~~~l~~ 237 (436)
T COG2256 158 FELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDEVLILELLEEILQR 237 (436)
T ss_pred eeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcccCHHHHHHHHhh
Confidence 99999999999999999543321 111222 447788899999976544333322 2221 124445555443
Q ss_pred hhcCCccccccHHHHHHHHHHHHhcChHH
Q 001999 368 LRSTSSEEKKELEEVYRFFKLVYKNLSSV 396 (984)
Q Consensus 368 l~~~~~~~~~~~~~i~~~l~~sy~~L~~~ 396 (984)
-...-+.+.+..-++.+++.-|...=+++
T Consensus 238 ~~~~~Dk~gD~hYdliSA~hKSvRGSD~d 266 (436)
T COG2256 238 RSARFDKDGDAHYDLISALHKSVRGSDPD 266 (436)
T ss_pred hhhccCCCcchHHHHHHHHHHhhccCCcC
Confidence 11111112234455777777777765554
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.80 E-value=7.3e-09 Score=100.90 Aligned_cols=99 Identities=21% Similarity=0.340 Sum_probs=21.0
Q ss_pred CceeEEEecCcccCCCcchHhh-cCCCccEEeccCCCCccCCcchhcccccCeEecCCCcccccCchhh-hccCCCcEEE
Q 001999 520 CEILTLIVEGRRLEKLPMSFFE-YMCHLQLLDLHDTSIRCLPPSISRLINLNALFLRSCSLLFQLPKEI-RYLQKLEILD 597 (984)
Q Consensus 520 ~~L~~L~l~~~~l~~l~~~~~~-~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i-~~L~~L~~L~ 597 (984)
.+++.|++.+|.++.+.. ++ .+.+|++|+|++|.|+.++ .+..+++|++|++++| .++.++..+ ..+++|++|+
T Consensus 19 ~~~~~L~L~~n~I~~Ie~--L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 19 VKLRELNLRGNQISTIEN--LGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNN-RISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp -----------------S----TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE
T ss_pred cccccccccccccccccc--hhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCC-CCCccccchHHhCCcCCEEE
Confidence 344444444444444322 22 2444555555555444442 2444455555555442 244443333 2345555555
Q ss_pred ecCccccccc--hhhhccCCCCeeecc
Q 001999 598 VRHTRIQCLP--SEIGQLIKLKCLRVS 622 (984)
Q Consensus 598 l~~~~l~~lp--~~~~~L~~L~~L~l~ 622 (984)
+++|+|..+- ..+..+++|+.|++.
T Consensus 95 L~~N~I~~l~~l~~L~~l~~L~~L~L~ 121 (175)
T PF14580_consen 95 LSNNKISDLNELEPLSSLPKLRVLSLE 121 (175)
T ss_dssp -TTS---SCCCCGGGGG-TT--EEE-T
T ss_pred CcCCcCCChHHhHHHHcCCCcceeecc
Confidence 5555444221 223445555555554
No 37
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.76 E-value=1.4e-09 Score=113.68 Aligned_cols=266 Identities=15% Similarity=0.099 Sum_probs=170.8
Q ss_pred hhccCeEeeeccCCCCCCCC--CCCcCceeEEEecCcccCCCcchHhhcCCCccEEeccC-CCCccCCc-chhcccccCe
Q 001999 496 EWKDTKKLSLFGFPSSTLPD--MPNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHD-TSIRCLPP-SISRLINLNA 571 (984)
Q Consensus 496 ~~~~~r~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~-~~i~~lp~-~i~~l~~L~~ 571 (984)
-+.....|.+..|.++.+|. +..+++||.|+++.|.++.|.+..|.+++.|..|-+.+ |+|+++|+ .+++|..|+-
T Consensus 65 LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqr 144 (498)
T KOG4237|consen 65 LPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQR 144 (498)
T ss_pred CCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHH
Confidence 34577889999999999885 68999999999999999999888899999987776666 89999987 5889999999
Q ss_pred EecCCCcccccCchhhhccCCCcEEEecCccccccch-hhhccCCCCeeecccccccCccccCCCCCCc-ccchhhhhcc
Q 001999 572 LFLRSCSLLFQLPKEIRYLQKLEILDVRHTRIQCLPS-EIGQLIKLKCLRVSWVENVGNHTHAGAWPGE-MISSNIISKL 649 (984)
Q Consensus 572 L~L~~c~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~-~~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~-~ip~~~l~~L 649 (984)
|.+.-|..--.....+..|++|.-|.+..|.++.++. .+..+..++++.+.....+....+.-.-+.. ..|.. ++..
T Consensus 145 LllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ie-tsga 223 (498)
T KOG4237|consen 145 LLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIE-TSGA 223 (498)
T ss_pred HhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhh-cccc
Confidence 9998865333344568999999999999999999988 5888999999988733211100000000000 01110 2222
Q ss_pred ccccceeeee-----cCCch--hHH----------h-hhhhhhHHHhhccCCCceEEEecCCcchhhhhhhcccccCCCC
Q 001999 650 CLLEELIIEV-----LDPSD--RRW----------K-QNVESIAGEIAALEQLTTLHFYFPTIKCFKTFINRRKSVNGNK 711 (984)
Q Consensus 650 ~~L~~L~l~~-----~~~~~--~~~----------~-~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 711 (984)
+......+.. .+... ..| + -....-...++.+++|++|+++.+.++.+..--
T Consensus 224 rc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~a---------- 293 (498)
T KOG4237|consen 224 RCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGA---------- 293 (498)
T ss_pred eecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhh----------
Confidence 2111111110 00000 000 0 001112345788999999999988766554211
Q ss_pred CCCCCCcceeEEEecccCccceeccccccccccccceEEc-cCCCCchhHHHHHhhhccceeeccccccccccccccccc
Q 001999 712 SRHGDNFKSFNIVVGYPQSTSLLAGFDVSEWSAEKHLRFS-AGVEEIPGEFLTILKQAYSFELIGSQYAVNLSNFGVDNL 790 (984)
Q Consensus 712 ~~~~~~~l~~~~~~g~~~~~~~l~~~~~p~~~~L~~L~l~-~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~l 790 (984)
|.....++.|.+. +..+.+...++..+..|+.|.+.++ .++.+....|..+
T Consensus 294 ---------------------------Fe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N-~it~~~~~aF~~~ 345 (498)
T KOG4237|consen 294 ---------------------------FEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDN-QITTVAPGAFQTL 345 (498)
T ss_pred ---------------------------hcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCC-eeEEEeccccccc
Confidence 1111124566665 4566666667778888888877555 3444444456666
Q ss_pred cccCeeEEcc
Q 001999 791 VRLQACVIED 800 (984)
Q Consensus 791 ~~L~~L~l~~ 800 (984)
..|.+|.+-.
T Consensus 346 ~~l~~l~l~~ 355 (498)
T KOG4237|consen 346 FSLSTLNLLS 355 (498)
T ss_pred ceeeeeehcc
Confidence 7777777754
No 38
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.73 E-value=3.9e-07 Score=103.70 Aligned_cols=179 Identities=12% Similarity=0.168 Sum_probs=111.3
Q ss_pred ccCCCCCCchHHHHHH---HHHHhccCCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHH
Q 001999 150 SRHASKFPSHKEYVET---LEKHLSSGGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEII 226 (984)
Q Consensus 150 ~~~~~~~vgr~~~~~~---l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i 226 (984)
|....+++|+++.+.. +.+++.......+.++|++|+||||+|+...+... ..| +.++.......-.+++
T Consensus 8 P~~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~--~~~-----~~l~a~~~~~~~ir~i 80 (413)
T PRK13342 8 PKTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATD--APF-----EALSAVTSGVKDLREV 80 (413)
T ss_pred CCCHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhC--CCE-----EEEecccccHHHHHHH
Confidence 3445678999988766 88888777778899999999999999999766655 333 2222221111111222
Q ss_pred HHHhccCccccchHHHHHHHHHHHcCCcEEEEEECCCCccc--hhhhccccCCCCcEEEEE--cCCcc--ccc---cCCc
Q 001999 227 LERLKVNAKELDNAQRADNISKELKDKRYVLFLDGVSSEIN--FKEIGIHDDHGRGKVVFA--CRSRE--FCW---QADD 297 (984)
Q Consensus 227 ~~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~--~~~~~~~~~~~gs~ilvT--TR~~~--v~~---~~~~ 297 (984)
++... .....+++.+|++|+++.... .+.+ ++.-..|..++|. |.+.. +.. ....
T Consensus 81 i~~~~---------------~~~~~g~~~vL~IDEi~~l~~~~q~~L-L~~le~~~iilI~att~n~~~~l~~aL~SR~~ 144 (413)
T PRK13342 81 IEEAR---------------QRRSAGRRTILFIDEIHRFNKAQQDAL-LPHVEDGTITLIGATTENPSFEVNPALLSRAQ 144 (413)
T ss_pred HHHHH---------------HhhhcCCceEEEEechhhhCHHHHHHH-HHHhhcCcEEEEEeCCCChhhhccHHHhccce
Confidence 22111 011246889999999987532 2222 3322335555553 44332 211 4457
Q ss_pred eEEccCCChHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHcCCCchHHHHHHHH
Q 001999 298 VIHVERLSPREAKKLFWEVVGVNLKKN-PDIEQEADSIVEECGGMPYMLKLIGKE 351 (984)
Q Consensus 298 ~~~l~~L~~~~~~~Lf~~~~~~~~~~~-~~l~~~~~~I~~~c~GlPlai~~~~~~ 351 (984)
.+.+.+++.++.+.++.+.+....... +--.+..+.|++.|+|.|..+..+...
T Consensus 145 ~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~ 199 (413)
T PRK13342 145 VFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLEL 199 (413)
T ss_pred eeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 899999999999999998764321111 223567888999999999766554443
No 39
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.71 E-value=2e-08 Score=97.91 Aligned_cols=122 Identities=23% Similarity=0.289 Sum_probs=51.0
Q ss_pred ccCeEeeeccCCCCCCCCCC-CcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCCcch-hcccccCeEecC
Q 001999 498 KDTKKLSLFGFPSSTLPDMP-NCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLPPSI-SRLINLNALFLR 575 (984)
Q Consensus 498 ~~~r~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i-~~l~~L~~L~L~ 575 (984)
.+.|.|++.+|.++.+..+. .+.+|+.|++++|.+..++. +..++.|++|++++|.|+++++.+ ..+++|+.|+++
T Consensus 19 ~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~ 96 (175)
T PF14580_consen 19 VKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLS 96 (175)
T ss_dssp -----------------S--TT-TT--EEE-TTS--S--TT------TT--EEE--SS---S-CHHHHHH-TT--EEE-T
T ss_pred cccccccccccccccccchhhhhcCCCEEECCCCCCccccC--ccChhhhhhcccCCCCCCccccchHHhCCcCCEEECc
Confidence 46788899999888877665 57889999999999888864 778889999999999999887655 368899999998
Q ss_pred CCcccccCc--hhhhccCCCcEEEecCccccccch----hhhccCCCCeeecc
Q 001999 576 SCSLLFQLP--KEIRYLQKLEILDVRHTRIQCLPS----EIGQLIKLKCLRVS 622 (984)
Q Consensus 576 ~c~~l~~lp--~~i~~L~~L~~L~l~~~~l~~lp~----~~~~L~~L~~L~l~ 622 (984)
+|. +..+- ..+..+++|++|++.+|.+...+. .+..+++|+.||-.
T Consensus 97 ~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 97 NNK-ISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp TS----SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred CCc-CCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 854 55432 346778899999999988775543 36677777777754
No 40
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.62 E-value=1.7e-09 Score=118.12 Aligned_cols=174 Identities=26% Similarity=0.351 Sum_probs=120.6
Q ss_pred cCeEeeeccCCCCCCCCC-CCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCCcchhcccccCeEecCCC
Q 001999 499 DTKKLSLFGFPSSTLPDM-PNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLPPSISRLINLNALFLRSC 577 (984)
Q Consensus 499 ~~r~l~l~~~~~~~l~~~-~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c 577 (984)
+.....++.|.+..+|.- ..|-.|..+.+..|.+..+|.. +.++..|.+|||+.|.+..+|..+|.|+ |+.|-+++
T Consensus 76 dt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~-i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sN- 152 (722)
T KOG0532|consen 76 DTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEA-ICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSN- 152 (722)
T ss_pred chhhhhccccccccCchHHHHHHHHHHHHHHhccceecchh-hhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEec-
Confidence 444556666777776643 4566777777777777777776 7778888888888888888888777775 77777777
Q ss_pred cccccCchhhhccCCCcEEEecCccccccchhhhccCCCCeeecccccccCccccCCCCCCcccchhhhhccccccceee
Q 001999 578 SLLFQLPKEIRYLQKLEILDVRHTRIQCLPSEIGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSNIISKLCLLEELII 657 (984)
Q Consensus 578 ~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~~L~~L~~L~l 657 (984)
++++.+|..++.+..|..||.+.|.+..+|..++.|.+|+.|++. .+..+. +|.. +..| .|..|++
T Consensus 153 Nkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vr-----Rn~l~~-------lp~E-l~~L-pLi~lDf 218 (722)
T KOG0532|consen 153 NKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVR-----RNHLED-------LPEE-LCSL-PLIRLDF 218 (722)
T ss_pred CccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHh-----hhhhhh-------CCHH-HhCC-ceeeeec
Confidence 457788888887788888888888888888888888888888776 444433 5543 2222 2334444
Q ss_pred eecCCchhHHhhhhhhhHHHhhccCCCceEEEecCCcchhh
Q 001999 658 EVLDPSDRRWKQNVESIAGEIAALEQLTTLHFYFPTIKCFK 698 (984)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 698 (984)
+ |++...++.++..|++|++|-|..|...+-+
T Consensus 219 S---------cNkis~iPv~fr~m~~Lq~l~LenNPLqSPP 250 (722)
T KOG0532|consen 219 S---------CNKISYLPVDFRKMRHLQVLQLENNPLQSPP 250 (722)
T ss_pred c---------cCceeecchhhhhhhhheeeeeccCCCCCCh
Confidence 4 2334557777778888888888766655444
No 41
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.61 E-value=4.7e-09 Score=110.74 Aligned_cols=139 Identities=18% Similarity=0.208 Sum_probs=90.8
Q ss_pred cccccCeeEEcccCCceEEecCCCCCcccCCCcceeecccccccccccccccccCcccccceeeecccccccccCcHH--
Q 001999 789 NLVRLQACVIEDCNEMTSIIDGNHRGVVPFQGLNNLHIKNLPKLMHIWVGPIASGSLNSLRTLRVKICHSIKTLFSKE-- 866 (984)
Q Consensus 789 ~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~-- 866 (984)
+.++|+.|.++.|..+....... .....+.|+.+.+.+|....+-.. .....++|.|++|.++.|..+++. ...
T Consensus 318 ~~~~L~~l~l~~c~~fsd~~ft~--l~rn~~~Le~l~~e~~~~~~d~tL-~sls~~C~~lr~lslshce~itD~-gi~~l 393 (483)
T KOG4341|consen 318 HCHNLQVLELSGCQQFSDRGFTM--LGRNCPHLERLDLEECGLITDGTL-ASLSRNCPRLRVLSLSHCELITDE-GIRHL 393 (483)
T ss_pred CCCceEEEeccccchhhhhhhhh--hhcCChhhhhhcccccceehhhhH-hhhccCCchhccCChhhhhhhhhh-hhhhh
Confidence 46788888888888765543322 122357888888888765543210 111247899999999999777766 111
Q ss_pred --HHhhcccccEEeecccchhHHHhhcCcccccCCCCcccEeeccCCccccccCCC-CccCCCCcceEeecc
Q 001999 867 --MVAQLNELQDLQVEDCQMIEEIVEAGTVLAIGEFPKLKTLELIDLPKLSTICNS-LLLPWPSLETIKIKA 935 (984)
Q Consensus 867 --~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~L~~L~L~~c~~L~~i~~~-~~~~l~sL~~L~i~~ 935 (984)
....+..|+.|.+++|+.+++- ....+..+++|+.+++.+|...+.-+.. ...++|++++.....
T Consensus 394 ~~~~c~~~~l~~lEL~n~p~i~d~----~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~~a 461 (483)
T KOG4341|consen 394 SSSSCSLEGLEVLELDNCPLITDA----TLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAYFA 461 (483)
T ss_pred hhccccccccceeeecCCCCchHH----HHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhhcc
Confidence 1235677899999999987643 3345667889999999998877764441 234566666655543
No 42
>PRK06893 DNA replication initiation factor; Validated
Probab=98.54 E-value=8.6e-07 Score=92.19 Aligned_cols=149 Identities=7% Similarity=0.008 Sum_probs=91.0
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHHHHHhccCccccchHHHHHHHHHHHcC
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEIILERLKVNAKELDNAQRADNISKELKD 252 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~ 252 (984)
...+.+.++|++|+|||+|++...+.+. .....+.|+.++... .... .+.+.++
T Consensus 37 ~~~~~l~l~G~~G~GKThL~~ai~~~~~--~~~~~~~y~~~~~~~---~~~~--------------------~~~~~~~- 90 (229)
T PRK06893 37 LQQPFFYIWGGKSSGKSHLLKAVSNHYL--LNQRTAIYIPLSKSQ---YFSP--------------------AVLENLE- 90 (229)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHHHH--HcCCCeEEeeHHHhh---hhhH--------------------HHHhhcc-
Confidence 3446789999999999999999655543 233345677654210 0000 1111122
Q ss_pred CcEEEEEECCCCc---cchhhhccc----cCCCCcEEEEEcCCc----------cccc--cCCceEEccCCChHHHHHHH
Q 001999 253 KRYVLFLDGVSSE---INFKEIGIH----DDHGRGKVVFACRSR----------EFCW--QADDVIHVERLSPREAKKLF 313 (984)
Q Consensus 253 kr~LlVlDdv~~~---~~~~~~~~~----~~~~gs~ilvTTR~~----------~v~~--~~~~~~~l~~L~~~~~~~Lf 313 (984)
+.-+||+||+|.. .+|+...+. ....|+.+||+|.+. .+.. .....++++++++++.++++
T Consensus 91 ~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL 170 (229)
T PRK06893 91 QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVL 170 (229)
T ss_pred cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHH
Confidence 3358999999873 345533111 223455665554443 2333 55678999999999999999
Q ss_pred HHHhCCCCCCCcchHHHHHHHHHHcCCCchHHHHHH
Q 001999 314 WEVVGVNLKKNPDIEQEADSIVEECGGMPYMLKLIG 349 (984)
Q Consensus 314 ~~~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~~~ 349 (984)
++.+.... ..--+++.+-|++.+.|..-++..+-
T Consensus 171 ~~~a~~~~--l~l~~~v~~~L~~~~~~d~r~l~~~l 204 (229)
T PRK06893 171 QRNAYQRG--IELSDEVANFLLKRLDRDMHTLFDAL 204 (229)
T ss_pred HHHHHHcC--CCCCHHHHHHHHHhccCCHHHHHHHH
Confidence 99886441 12224577888888887665544433
No 43
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.52 E-value=1.6e-05 Score=93.05 Aligned_cols=198 Identities=15% Similarity=0.159 Sum_probs=116.7
Q ss_pred CCCCchHHHHHHHHHHhcc-----CCccEEEEEcCCCChHHHHHHHhhhhccc---CCCCC--eEEEEEeCCCCCHHHHH
Q 001999 154 SKFPSHKEYVETLEKHLSS-----GGLKKICICGPLGVGKTTIMENSHDSVGE---SGRFD--IIFWVNVNTDGNISDIQ 223 (984)
Q Consensus 154 ~~~vgr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~~~~~~~~---~~~F~--~~~wv~vs~~~~~~~i~ 223 (984)
..+.||++++++|...|.. ....++.|+|++|.|||+.++.+.+.+++ ..... .+++|....-.+...+.
T Consensus 755 D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIY 834 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAY 834 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHH
Confidence 5678999999999888864 23357889999999999999996555431 11222 35677776667788888
Q ss_pred HHHHHHhccCccccc--hHHHHHHHHHHHc---CCcEEEEEECCCCcc---c--hhhh-ccccCCCCcEEEE--EcCCcc
Q 001999 224 EIILERLKVNAKELD--NAQRADNISKELK---DKRYVLFLDGVSSEI---N--FKEI-GIHDDHGRGKVVF--ACRSRE 290 (984)
Q Consensus 224 ~~i~~~l~~~~~~~~--~~~~~~~l~~~L~---~kr~LlVlDdv~~~~---~--~~~~-~~~~~~~gs~ilv--TTR~~~ 290 (984)
..|.+++....+... ..+....+...+. +...+||||+|.... + +-.+ ..+ ...+++|+| +|....
T Consensus 835 qvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~-~~s~SKLiLIGISNdlD 913 (1164)
T PTZ00112 835 QVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWP-TKINSKLVLIAISNTMD 913 (1164)
T ss_pred HHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHh-hccCCeEEEEEecCchh
Confidence 999988854332221 1444555555542 234699999997532 1 1111 112 234556554 332211
Q ss_pred cc-----c----cCCceEEccCCChHHHHHHHHHHhCCC--CCCCcchHHHHHHHHHHcCCCchHHHHHHHHh
Q 001999 291 FC-----W----QADDVIHVERLSPREAKKLFWEVVGVN--LKKNPDIEQEADSIVEECGGMPYMLKLIGKEL 352 (984)
Q Consensus 291 v~-----~----~~~~~~~l~~L~~~~~~~Lf~~~~~~~--~~~~~~l~~~~~~I~~~c~GlPlai~~~~~~l 352 (984)
.. . -....+...|++.++-.+++.+++... .-...-++-+|+.++...|-.=.|+.++-.+.
T Consensus 914 LperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAg 986 (1164)
T PTZ00112 914 LPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAF 986 (1164)
T ss_pred cchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 11 1 122346779999999999999987643 11122233344434333333345555544443
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=7.3e-09 Score=104.32 Aligned_cols=117 Identities=17% Similarity=0.138 Sum_probs=65.8
Q ss_pred ccccccCeeEEcccCCceEEecCCCCCcccCCCcceeecccccccccccccccccCcccccceeeecccccccccCcHHH
Q 001999 788 DNLVRLQACVIEDCNEMTSIIDGNHRGVVPFQGLNNLHIKNLPKLMHIWVGPIASGSLNSLRTLRVKICHSIKTLFSKEM 867 (984)
Q Consensus 788 ~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~ 867 (984)
.+++.|..|+|+.|...+....-.- ...-++|..|+|+||..--.......-...+|+|..|++++|-.|+.. -...
T Consensus 257 ~scs~L~~LNlsWc~l~~~~Vtv~V--~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~-~~~~ 333 (419)
T KOG2120|consen 257 SSCSRLDELNLSWCFLFTEKVTVAV--AHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKND-CFQE 333 (419)
T ss_pred HhhhhHhhcCchHhhccchhhhHHH--hhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCch-HHHH
Confidence 3466777777777765433211000 001267777777776432211110011135677888888887777664 3455
Q ss_pred HhhcccccEEeecccchhHHHhhcCcccccCCCCcccEeeccCC
Q 001999 868 VAQLNELQDLQVEDCQMIEEIVEAGTVLAIGEFPKLKTLELIDL 911 (984)
Q Consensus 868 l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~L~~L~L~~c 911 (984)
+.+++.|++|.++.|+.+. .+....+...|+|.+|++.+|
T Consensus 334 ~~kf~~L~~lSlsRCY~i~----p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 334 FFKFNYLQHLSLSRCYDII----PETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred HHhcchheeeehhhhcCCC----hHHeeeeccCcceEEEEeccc
Confidence 6677788888888777652 122234556677777777665
No 45
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.48 E-value=1.1e-05 Score=99.17 Aligned_cols=299 Identities=13% Similarity=0.165 Sum_probs=178.2
Q ss_pred CCCchHHHHHHHHHHhcc---CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEe---CCCCC---HHHHHHH
Q 001999 155 KFPSHKEYVETLEKHLSS---GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNV---NTDGN---ISDIQEI 225 (984)
Q Consensus 155 ~~vgr~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~v---s~~~~---~~~i~~~ 225 (984)
+++||+.+++.|...+.+ ....|+.+.|..|||||++++++.+.+. +.+...+--.. ..+.. .....++
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~--~~~~~~i~~~f~q~~~~ipl~~lvq~~r~ 78 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPIT--QQRGYFIKGKFDQFERNIPLSPLVQAFRD 78 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHh--ccceeeeHhhcccccCCCchHHHHHHHHH
Confidence 378999999999988875 5677999999999999999999888776 33222111111 11111 1222333
Q ss_pred HHHHh-------------------ccCcccc-----------------------chHH-----HHHHHHHHH-cCCcEEE
Q 001999 226 ILERL-------------------KVNAKEL-----------------------DNAQ-----RADNISKEL-KDKRYVL 257 (984)
Q Consensus 226 i~~~l-------------------~~~~~~~-----------------------~~~~-----~~~~l~~~L-~~kr~Ll 257 (984)
+..++ +...... ..+. ....|..+. +.++.++
T Consensus 79 l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi 158 (849)
T COG3899 79 LMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVI 158 (849)
T ss_pred HHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEE
Confidence 33322 1111000 0011 111222233 3469999
Q ss_pred EEECC-CCcc-chhhh---cccc---CCCCcEEEEEcCCccc---cc---cCCceEEccCCChHHHHHHHHHHhCCCCCC
Q 001999 258 FLDGV-SSEI-NFKEI---GIHD---DHGRGKVVFACRSREF---CW---QADDVIHVERLSPREAKKLFWEVVGVNLKK 323 (984)
Q Consensus 258 VlDdv-~~~~-~~~~~---~~~~---~~~gs~ilvTTR~~~v---~~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~ 323 (984)
|+||+ |-+. ...-+ +... .-....|..+...... .. .....+.|.||+..+.-.+.....+..
T Consensus 159 ~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~--- 235 (849)
T COG3899 159 VLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCT--- 235 (849)
T ss_pred EEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCc---
Confidence 99999 4332 11111 1111 1112233333322222 11 556789999999999999999988753
Q ss_pred CcchHHHHHHHHHHcCCCchHHHHHHHHhhcC------ccHHHHHHHHHHhhcCCccccccHHHHHHHHHHHHhcChHHH
Q 001999 324 NPDIEQEADSIVEECGGMPYMLKLIGKELVNQ------SEVAIWRATVDDLRSTSSEEKKELEEVYRFFKLVYKNLSSVQ 397 (984)
Q Consensus 324 ~~~l~~~~~~I~~~c~GlPlai~~~~~~l~~~------~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~ 397 (984)
.....+..+.|+++..|.|+.+.-+-..+..+ .+...|+.-..++.. ....+++...+..-.+.||...
T Consensus 236 ~~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~-----~~~~~~vv~~l~~rl~kL~~~t 310 (849)
T COG3899 236 KLLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGI-----LATTDAVVEFLAARLQKLPGTT 310 (849)
T ss_pred ccccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCC-----chhhHHHHHHHHHHHhcCCHHH
Confidence 22334578899999999999999998888774 344555544333322 2234557778999999999999
Q ss_pred HHHHhhhcccCCCCccCHHHHHHHHhhcCCCCccCcccchhhHHHHHHHHHhhcccccccc------ccc---ccchHHH
Q 001999 398 QHCLLGWAIFPTGLEISQDYIIDCWAAQKFLPRFGKIGDARDTGCLILDKFEKKSLLQKQS------KEK---RYKMIEF 468 (984)
Q Consensus 398 k~cfl~~s~fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~------~~~---~~~mHdl 468 (984)
+.-+-..|++-. .|+.+.|-..|- .....++....+.|....++-..+ ... +-..||.
T Consensus 311 ~~Vl~~AA~iG~--~F~l~~La~l~~-----------~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~ 377 (849)
T COG3899 311 REVLKAAACIGN--RFDLDTLAALAE-----------DSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDR 377 (849)
T ss_pred HHHHHHHHHhCc--cCCHHHHHHHHh-----------hchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHH
Confidence 999988888764 455566655542 133455666666665555443211 011 2257888
Q ss_pred HHHHHHHH
Q 001999 469 FQRAALRI 476 (984)
Q Consensus 469 v~~~a~~~ 476 (984)
|++.|-..
T Consensus 378 vqqaaY~~ 385 (849)
T COG3899 378 VQQAAYNL 385 (849)
T ss_pred HHHHHhcc
Confidence 88887543
No 46
>PRK04195 replication factor C large subunit; Provisional
Probab=98.44 E-value=1.3e-05 Score=93.10 Aligned_cols=241 Identities=15% Similarity=0.175 Sum_probs=137.7
Q ss_pred ccCCCCCCchHHHHHHHHHHhcc----CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHH
Q 001999 150 SRHASKFPSHKEYVETLEKHLSS----GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEI 225 (984)
Q Consensus 150 ~~~~~~~vgr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~ 225 (984)
|....+++|.++.++.+.+|+.. ...+.+.|+|++|+||||+|+...+.+. |+ .+-++.++..+.. ....
T Consensus 10 P~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~----~~-~ielnasd~r~~~-~i~~ 83 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG----WE-VIELNASDQRTAD-VIER 83 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC----CC-EEEEcccccccHH-HHHH
Confidence 33456789999999999999864 2278899999999999999999776653 22 3344555433322 2223
Q ss_pred HHHHhccCccccchHHHHHHHHHHHc-CCcEEEEEECCCCccc------hhhhccccCCCCcEEEEEcCCcc-cc--c--
Q 001999 226 ILERLKVNAKELDNAQRADNISKELK-DKRYVLFLDGVSSEIN------FKEIGIHDDHGRGKVVFACRSRE-FC--W-- 293 (984)
Q Consensus 226 i~~~l~~~~~~~~~~~~~~~l~~~L~-~kr~LlVlDdv~~~~~------~~~~~~~~~~~gs~ilvTTR~~~-v~--~-- 293 (984)
++....... .+. .++-+||+|+++.... +..+.-.-...+..||+|+.+.. .. .
T Consensus 84 ~i~~~~~~~--------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~~~~iIli~n~~~~~~~k~Lr 149 (482)
T PRK04195 84 VAGEAATSG--------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKKAKQPIILTANDPYDPSLRELR 149 (482)
T ss_pred HHHHhhccC--------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHcCCCCEEEeccCccccchhhHh
Confidence 322221110 011 3678999999976421 22221111123445666654322 11 1
Q ss_pred cCCceEEccCCChHHHHHHHHHHhCCC-CCCCcchHHHHHHHHHHcCCCchHHHHHHHHhhcC---ccHHHHHHHHHHhh
Q 001999 294 QADDVIHVERLSPREAKKLFWEVVGVN-LKKNPDIEQEADSIVEECGGMPYMLKLIGKELVNQ---SEVAIWRATVDDLR 369 (984)
Q Consensus 294 ~~~~~~~l~~L~~~~~~~Lf~~~~~~~-~~~~~~l~~~~~~I~~~c~GlPlai~~~~~~l~~~---~~~~~w~~~l~~l~ 369 (984)
.....+.+.+++.++....+.+.+... ...+ .++...|++.++|..-.+......+... .+.+.-+.+..
T Consensus 150 sr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~---~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~~--- 223 (482)
T PRK04195 150 NACLMIEFKRLSTRSIVPVLKRICRKEGIECD---DEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLGR--- 223 (482)
T ss_pred ccceEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhhc---
Confidence 456789999999999999888877543 2122 4578999999999876665444444332 22332222221
Q ss_pred cCCccccccHHHHHHHHHHHHh-cChHHHHHHHhhhcccCCCCccCHHHHHHHHhhcCCCCc
Q 001999 370 STSSEEKKELEEVYRFFKLVYK-NLSSVQQHCLLGWAIFPTGLEISQDYIIDCWAAQKFLPR 430 (984)
Q Consensus 370 ~~~~~~~~~~~~i~~~l~~sy~-~L~~~~k~cfl~~s~fp~~~~i~~~~Li~~W~aeg~i~~ 430 (984)
... ..+++.++..-+. .-+......+..+ .++- +.+-.|+.|++...
T Consensus 224 ~d~------~~~if~~l~~i~~~k~~~~a~~~~~~~-------~~~~-~~i~~~l~en~~~~ 271 (482)
T PRK04195 224 RDR------EESIFDALDAVFKARNADQALEASYDV-------DEDP-DDLIEWIDENIPKE 271 (482)
T ss_pred CCC------CCCHHHHHHHHHCCCCHHHHHHHHHcc-------cCCH-HHHHHHHHhccccc
Confidence 111 1235555554443 2222233222221 1222 45778999999765
No 47
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.40 E-value=3.4e-06 Score=88.18 Aligned_cols=165 Identities=14% Similarity=0.116 Sum_probs=100.4
Q ss_pred chHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHHHHHhccCcccc
Q 001999 158 SHKEYVETLEKHLSSGGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEIILERLKVNAKEL 237 (984)
Q Consensus 158 gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~ 237 (984)
+.+..++.+.+++.......+.|+|+.|+|||+||+....... ......++++++.-.+ ..
T Consensus 21 ~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~--~~~~~~~~i~~~~~~~------~~----------- 81 (226)
T TIGR03420 21 GNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAE--ERGKSAIYLPLAELAQ------AD----------- 81 (226)
T ss_pred CcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHH--hcCCcEEEEeHHHHHH------hH-----------
Confidence 3556777888876666678899999999999999999655554 3334456665443211 00
Q ss_pred chHHHHHHHHHHHcCCcEEEEEECCCCcc---chhhhc---cc-cCCCCcEEEEEcCCccc---------cc--cCCceE
Q 001999 238 DNAQRADNISKELKDKRYVLFLDGVSSEI---NFKEIG---IH-DDHGRGKVVFACRSREF---------CW--QADDVI 299 (984)
Q Consensus 238 ~~~~~~~~l~~~L~~kr~LlVlDdv~~~~---~~~~~~---~~-~~~~gs~ilvTTR~~~v---------~~--~~~~~~ 299 (984)
..+.+.+++ .-+||+||+.... .|.... +. ....+.++|+||+.... .. .....+
T Consensus 82 ------~~~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i 154 (226)
T TIGR03420 82 ------PEVLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVF 154 (226)
T ss_pred ------HHHHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeE
Confidence 011112222 2389999997643 333221 11 11234588898875421 11 224689
Q ss_pred EccCCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCCchHHHHHHH
Q 001999 300 HVERLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGMPYMLKLIGK 350 (984)
Q Consensus 300 ~l~~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~~~~ 350 (984)
++.+++.++-..++.+.+.... .+--.+..+.|++.+.|.|..+..+..
T Consensus 155 ~l~~l~~~e~~~~l~~~~~~~~--~~~~~~~l~~L~~~~~gn~r~L~~~l~ 203 (226)
T TIGR03420 155 QLPPLSDEEKIAALQSRAARRG--LQLPDEVADYLLRHGSRDMGSLMALLD 203 (226)
T ss_pred ecCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 9999999999999887653221 111234667777788888766655543
No 48
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.37 E-value=6.8e-08 Score=97.34 Aligned_cols=125 Identities=25% Similarity=0.315 Sum_probs=79.3
Q ss_pred hhhhccCeEeeeccCCCCCCCCC-CCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCCcchhcccccCeE
Q 001999 494 EEEWKDTKKLSLFGFPSSTLPDM-PNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLPPSISRLINLNAL 572 (984)
Q Consensus 494 ~~~~~~~r~l~l~~~~~~~l~~~-~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L 572 (984)
...|+.+..+.+++|.++.+... .-.|.+|.|+++.|.+..+.. +..+++|..||||+|.++.+-.+-.+|-|.++|
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTL 357 (490)
T ss_pred cchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh--hhhcccceEeecccchhHhhhhhHhhhcCEeee
Confidence 34566666777777766655433 334667777777777666544 566677777777777666665444466666777
Q ss_pred ecCCCcccccCchhhhccCCCcEEEecCccccccc--hhhhccCCCCeeecc
Q 001999 573 FLRSCSLLFQLPKEIRYLQKLEILDVRHTRIQCLP--SEIGQLIKLKCLRVS 622 (984)
Q Consensus 573 ~L~~c~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp--~~~~~L~~L~~L~l~ 622 (984)
.|++| .+..+ +++++|.+|..||+++|+|+.+- ..||+|+.|++|.+.
T Consensus 358 ~La~N-~iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~ 407 (490)
T KOG1259|consen 358 KLAQN-KIETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLT 407 (490)
T ss_pred ehhhh-hHhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhc
Confidence 77764 24444 45667777777777777766543 346677777776665
No 49
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.36 E-value=5.4e-06 Score=82.57 Aligned_cols=171 Identities=17% Similarity=0.189 Sum_probs=94.2
Q ss_pred ccCCCCCCchHHHHHHHHHHhc-----cCCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHH
Q 001999 150 SRHASKFPSHKEYVETLEKHLS-----SGGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQE 224 (984)
Q Consensus 150 ~~~~~~~vgr~~~~~~l~~~L~-----~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~ 224 (984)
|..-.+|+|.++-++.+.-++. +....-+-++|++|+||||||+...+... ..|. +++.+.--..
T Consensus 20 P~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~--~~~~---~~sg~~i~k~----- 89 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELG--VNFK---ITSGPAIEKA----- 89 (233)
T ss_dssp -SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT----EE---EEECCC--SC-----
T ss_pred CCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccC--CCeE---eccchhhhhH-----
Confidence 4456789999998888654443 24577889999999999999999887776 5552 2222110011
Q ss_pred HHHHHhccCccccchHHHHHHHHHHHcCCcEEEEEECCCCcc-c--------hhhhcc--c-cCC-----------CCcE
Q 001999 225 IILERLKVNAKELDNAQRADNISKELKDKRYVLFLDGVSSEI-N--------FKEIGI--H-DDH-----------GRGK 281 (984)
Q Consensus 225 ~i~~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~-~--------~~~~~~--~-~~~-----------~gs~ 281 (984)
.++...+.+ + +++-+|++|++.... . .+...+ . ..+ +-+-
T Consensus 90 ---------------~dl~~il~~-l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTl 152 (233)
T PF05496_consen 90 ---------------GDLAAILTN-L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTL 152 (233)
T ss_dssp ---------------HHHHHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EE
T ss_pred ---------------HHHHHHHHh-c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceE
Confidence 112221211 1 245577778886532 1 111110 0 111 1223
Q ss_pred EEEEcCCccccc----cCCceEEccCCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCCchHHHHHH
Q 001999 282 VVFACRSREFCW----QADDVIHVERLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGMPYMLKLIG 349 (984)
Q Consensus 282 ilvTTR~~~v~~----~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~~~ 349 (984)
|=.|||...+.. ......+++..+.+|-.++..+.+..- ..+--++.+.+|+++|.|-|--+.-+-
T Consensus 153 igATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l--~i~i~~~~~~~Ia~rsrGtPRiAnrll 222 (233)
T PF05496_consen 153 IGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARIL--NIEIDEDAAEEIARRSRGTPRIANRLL 222 (233)
T ss_dssp EEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCT--T-EE-HHHHHHHHHCTTTSHHHHHHHH
T ss_pred eeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHh--CCCcCHHHHHHHHHhcCCChHHHHHHH
Confidence 446899877755 444567899999999999998876543 222336789999999999996544433
No 50
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=2e-07 Score=99.24 Aligned_cols=38 Identities=16% Similarity=0.145 Sum_probs=21.9
Q ss_pred ccccccceeeeecCCchhHHhhhhhhhHHHhhccCCCceEEEecC
Q 001999 648 KLCLLEELIIEVLDPSDRRWKQNVESIAGEIAALEQLTTLHFYFP 692 (984)
Q Consensus 648 ~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 692 (984)
.+++|+.|.+..|..+ ...+..-+..+++|..|.+..+
T Consensus 195 ~l~~lK~L~l~~CGls-------~k~V~~~~~~fPsl~~L~L~~N 232 (505)
T KOG3207|consen 195 LLSHLKQLVLNSCGLS-------WKDVQWILLTFPSLEVLYLEAN 232 (505)
T ss_pred hhhhhheEEeccCCCC-------HHHHHHHHHhCCcHHHhhhhcc
Confidence 4556666666666554 2334445556667776666644
No 51
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.35 E-value=3.6e-05 Score=89.77 Aligned_cols=178 Identities=16% Similarity=0.202 Sum_probs=109.5
Q ss_pred CCCCCCchHHHHHHHHHHhccCCc-cEEEEEcCCCChHHHHHHHhhhhcccC-------------------CCCCeEEEE
Q 001999 152 HASKFPSHKEYVETLEKHLSSGGL-KKICICGPLGVGKTTIMENSHDSVGES-------------------GRFDIIFWV 211 (984)
Q Consensus 152 ~~~~~vgr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~~~~~~~~~-------------------~~F~~~~wv 211 (984)
.-++++|.+..++.|.+++..+++ ..+.++|..|+||||+|+...+.+.-. +.|...+++
T Consensus 14 tFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEI 93 (830)
T PRK07003 14 DFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEM 93 (830)
T ss_pred cHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEe
Confidence 346789999999999999987653 456799999999999999744443200 112223333
Q ss_pred EeCCCCCHHHHHHHHHHHhccCccccchHHHHHHHHHHHcCCcEEEEEECCCCcc--chhhh--ccccCCCCcEEEEEcC
Q 001999 212 NVNTDGNISDIQEIILERLKVNAKELDNAQRADNISKELKDKRYVLFLDGVSSEI--NFKEI--GIHDDHGRGKVVFACR 287 (984)
Q Consensus 212 ~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~--~~~~~--~~~~~~~gs~ilvTTR 287 (984)
..+....+.++ +++++.+. ..-..++.-++|||++.... .+..+ .+..-....++|+||+
T Consensus 94 DAas~rgVDdI-ReLIe~a~---------------~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTt 157 (830)
T PRK07003 94 DAASNRGVDEM-AALLERAV---------------YAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATT 157 (830)
T ss_pred cccccccHHHH-HHHHHHHH---------------hccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEEC
Confidence 33222222111 11111110 00113566789999998754 24433 1223344677777766
Q ss_pred Ccc-ccc---cCCceEEccCCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCCch-HHHH
Q 001999 288 SRE-FCW---QADDVIHVERLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGMPY-MLKL 347 (984)
Q Consensus 288 ~~~-v~~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~GlPl-ai~~ 347 (984)
+.. +.. .-+..+++..++.++..+.+.+.+..+. ..--.+..+.|++.++|..- |+..
T Consensus 158 d~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~Eg--I~id~eAL~lIA~~A~GsmRdALsL 220 (830)
T PRK07003 158 DPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEER--IAFEPQALRLLARAAQGSMRDALSL 220 (830)
T ss_pred ChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 543 332 5678999999999999999998876541 11224577889999998663 4444
No 52
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.34 E-value=8.3e-08 Score=96.71 Aligned_cols=127 Identities=24% Similarity=0.246 Sum_probs=97.8
Q ss_pred CCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCCcchhcccccCeEecCCCcccccCchhhhccCCCcEE
Q 001999 517 PNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLPPSISRLINLNALFLRSCSLLFQLPKEIRYLQKLEIL 596 (984)
Q Consensus 517 ~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L 596 (984)
..++.|++++++.|.++.+.++ ..-.+.+|+|++|.|+|..+-. +..|++|+.|+|++|. +..+-..-.+|-|+++|
T Consensus 281 dTWq~LtelDLS~N~I~~iDES-vKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLITQIDES-VKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNL-LAECVGWHLKLGNIKTL 357 (490)
T ss_pred chHhhhhhccccccchhhhhhh-hhhccceeEEeccccceeeehh-hhhcccceEeecccch-hHhhhhhHhhhcCEeee
Confidence 5678889999999999888877 6778889999999998887744 7888899999999854 55554455577888999
Q ss_pred EecCccccccchhhhccCCCCeeecccccccCccccCCCCCCcccc-hhhhhccccccceeeee
Q 001999 597 DVRHTRIQCLPSEIGQLIKLKCLRVSWVENVGNHTHAGAWPGEMIS-SNIISKLCLLEELIIEV 659 (984)
Q Consensus 597 ~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip-~~~l~~L~~L~~L~l~~ 659 (984)
.+++|.+..+ .++++|-+|..|++. ++++-. +. ...+++|+.|++|.+.+
T Consensus 358 ~La~N~iE~L-SGL~KLYSLvnLDl~-----~N~Ie~-------ldeV~~IG~LPCLE~l~L~~ 408 (490)
T KOG1259|consen 358 KLAQNKIETL-SGLRKLYSLVNLDLS-----SNQIEE-------LDEVNHIGNLPCLETLRLTG 408 (490)
T ss_pred ehhhhhHhhh-hhhHhhhhheecccc-----ccchhh-------HHHhcccccccHHHHHhhcC
Confidence 9999888877 578888889999988 554432 11 12378888888887765
No 53
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.32 E-value=1.4e-06 Score=90.68 Aligned_cols=99 Identities=14% Similarity=0.233 Sum_probs=67.6
Q ss_pred HHHHhcc-CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCC--CCHHHHHHHHHHHhccCccccch---
Q 001999 166 LEKHLSS-GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTD--GNISDIQEIILERLKVNAKELDN--- 239 (984)
Q Consensus 166 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~--~~~~~i~~~i~~~l~~~~~~~~~--- 239 (984)
.++.+.. .+...++|+|++|+|||||+++.++.+.. .+|+.++|++++.+ +++.++++.+...+-....+.+.
T Consensus 6 ~id~~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~-~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~ 84 (249)
T cd01128 6 VVDLFAPIGKGQRGLIVAPPKAGKTTLLQSIANAITK-NHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERH 84 (249)
T ss_pred heeeecccCCCCEEEEECCCCCCHHHHHHHHHhcccc-ccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHH
Confidence 3444443 56778999999999999999997776653 48999999998887 89999999994333211111111
Q ss_pred ----HHHHHHHHHH-HcCCcEEEEEECCCCc
Q 001999 240 ----AQRADNISKE-LKDKRYVLFLDGVSSE 265 (984)
Q Consensus 240 ----~~~~~~l~~~-L~~kr~LlVlDdv~~~ 265 (984)
.........+ -.|++.++++|++...
T Consensus 85 ~~~~~~~~~~a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 85 VQVAEMVLEKAKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEECHHHh
Confidence 1222222222 2489999999999653
No 54
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.32 E-value=7e-05 Score=89.00 Aligned_cols=169 Identities=18% Similarity=0.143 Sum_probs=104.5
Q ss_pred cCCCCCCchHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHhhhhcccCCCC---CeEEEEEeCC---CCCHHHHHH
Q 001999 151 RHASKFPSHKEYVETLEKHLSSGGLKKICICGPLGVGKTTIMENSHDSVGESGRF---DIIFWVNVNT---DGNISDIQE 224 (984)
Q Consensus 151 ~~~~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F---~~~~wv~vs~---~~~~~~i~~ 224 (984)
...++++|++..+..+.+.+.......+.|+|++|+||||+|+......+....+ ...-|+.+.. ..+...+..
T Consensus 151 ~~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~ 230 (615)
T TIGR02903 151 RAFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTN 230 (615)
T ss_pred CcHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhH
Confidence 3446789999999999888876667789999999999999999955544321222 1234554432 123333222
Q ss_pred HHH---------------HHhccC------------------ccccchHHHHHHHHHHHcCCcEEEEEECCCCc--cchh
Q 001999 225 IIL---------------ERLKVN------------------AKELDNAQRADNISKELKDKRYVLFLDGVSSE--INFK 269 (984)
Q Consensus 225 ~i~---------------~~l~~~------------------~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~ 269 (984)
.++ ...+.. ..+.-+...+..+.+.++++++.++-|+.|.. ..|.
T Consensus 231 ~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~ 310 (615)
T TIGR02903 231 PLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPK 310 (615)
T ss_pred HhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcccch
Confidence 111 111110 00011145678888999999999997777654 2455
Q ss_pred hh--ccccCCCCcEEEE--EcCCccccc----cCCceEEccCCChHHHHHHHHHHhCC
Q 001999 270 EI--GIHDDHGRGKVVF--ACRSREFCW----QADDVIHVERLSPREAKKLFWEVVGV 319 (984)
Q Consensus 270 ~~--~~~~~~~gs~ilv--TTR~~~v~~----~~~~~~~l~~L~~~~~~~Lf~~~~~~ 319 (984)
.+ .+....+..-|++ ||++..... .....+.+.+++.+|.+.++++.+..
T Consensus 311 ~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~ 368 (615)
T TIGR02903 311 YIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEK 368 (615)
T ss_pred hhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHH
Confidence 44 2333444444555 566544322 34457889999999999999987654
No 55
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.32 E-value=1.4e-05 Score=89.20 Aligned_cols=190 Identities=13% Similarity=0.076 Sum_probs=108.8
Q ss_pred CCCCCchHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHhhhhcccCCCCC-eEEEEEeCCCCCHHHHHHHHH----
Q 001999 153 ASKFPSHKEYVETLEKHLSSGGLKKICICGPLGVGKTTIMENSHDSVGESGRFD-IIFWVNVNTDGNISDIQEIIL---- 227 (984)
Q Consensus 153 ~~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~-~~~wv~vs~~~~~~~i~~~i~---- 227 (984)
..+++|++..++.+..++..+..+.+.++|+.|+||||+|+...+.+.. ..+. ..+.+++++-.+. ....+.
T Consensus 14 ~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~-~~~~~~~~~i~~~~~~~~--~~~~~~~~~~ 90 (337)
T PRK12402 14 LEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYG-DPWENNFTEFNVADFFDQ--GKKYLVEDPR 90 (337)
T ss_pred HHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcC-cccccceEEechhhhhhc--chhhhhcCcc
Confidence 4678999999999999998877778899999999999999996655531 2222 2344444331110 000000
Q ss_pred --HHhccC-ccccch-HHHHHHHHHHH-----cCCcEEEEEECCCCccc--hhhh--ccccCCCCcEEEEEcCCcc-ccc
Q 001999 228 --ERLKVN-AKELDN-AQRADNISKEL-----KDKRYVLFLDGVSSEIN--FKEI--GIHDDHGRGKVVFACRSRE-FCW 293 (984)
Q Consensus 228 --~~l~~~-~~~~~~-~~~~~~l~~~L-----~~kr~LlVlDdv~~~~~--~~~~--~~~~~~~gs~ilvTTR~~~-v~~ 293 (984)
..++.. ...... +.....++..- .+.+-+||+||+..... ...+ .+......+++|+||.... +..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~ 170 (337)
T PRK12402 91 FAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIP 170 (337)
T ss_pred hhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCch
Confidence 000000 000001 11111111111 23456899999975421 2222 1112234567777765432 222
Q ss_pred ---cCCceEEccCCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCCchHHHH
Q 001999 294 ---QADDVIHVERLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGMPYMLKL 347 (984)
Q Consensus 294 ---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~ 347 (984)
.....+++.+++.++....+.+.+..... .--.+..+.+++.++|.+-.+..
T Consensus 171 ~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~--~~~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 171 PIRSRCLPLFFRAPTDDELVDVLESIAEAEGV--DYDDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred hhcCCceEEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHH
Confidence 44568899999999999999887654311 12255788899999997755543
No 56
>PF13173 AAA_14: AAA domain
Probab=98.32 E-value=1.8e-06 Score=80.87 Aligned_cols=116 Identities=20% Similarity=0.229 Sum_probs=76.3
Q ss_pred ccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHHHHHhccCccccchHHHHHHHHHHHcCCc
Q 001999 175 LKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEIILERLKVNAKELDNAQRADNISKELKDKR 254 (984)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~kr 254 (984)
.+++.|.|+.|+||||++++..+... ....+++++..+........ .+....+.+....++
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~ 62 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLAD----------------PDLLEYFLELIKPGK 62 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhh----------------hhhHHHHHHhhccCC
Confidence 47899999999999999999554432 22456677655432211000 002233333344578
Q ss_pred EEEEEECCCCccchhhh--ccccCCCCcEEEEEcCCccccc--------cCCceEEccCCChHHH
Q 001999 255 YVLFLDGVSSEINFKEI--GIHDDHGRGKVVFACRSREFCW--------QADDVIHVERLSPREA 309 (984)
Q Consensus 255 ~LlVlDdv~~~~~~~~~--~~~~~~~gs~ilvTTR~~~v~~--------~~~~~~~l~~L~~~~~ 309 (984)
.+|++|++....+|... .+.+..+..+|++|+.+..... +....+++.||+.+|.
T Consensus 63 ~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 63 KYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred cEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 89999999998888766 2234446789999998766542 4556789999998764
No 57
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.29 E-value=5.1e-07 Score=103.13 Aligned_cols=171 Identities=27% Similarity=0.313 Sum_probs=102.1
Q ss_pred ccCeEeeeccCCCCCCCCCCCcC--ceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCCcchhcccccCeEecC
Q 001999 498 KDTKKLSLFGFPSSTLPDMPNCC--EILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLPPSISRLINLNALFLR 575 (984)
Q Consensus 498 ~~~r~l~l~~~~~~~l~~~~~~~--~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~ 575 (984)
+.++.+.+.++.+..++...... +|+.|++++|.+..+|.. +..++.|+.|++++|.+..+|...+.+..|+.|+++
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~-~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls 194 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSP-LRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLS 194 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccchhhhhhh-hhccccccccccCCchhhhhhhhhhhhhhhhheecc
Confidence 34566666666666666554443 666666666666666533 566666777777777666666666666666667666
Q ss_pred CCcccccCchhhhccCCCcEEEecCccccccchhhhccCCCCeeecccccccCccccCCCCCCcccchhhhhccccccce
Q 001999 576 SCSLLFQLPKEIRYLQKLEILDVRHTRIQCLPSEIGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSNIISKLCLLEEL 655 (984)
Q Consensus 576 ~c~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~~L~~L~~L 655 (984)
++ .+..+|..++.+.+|++|.++++.+...+..+.++.++..|.+. .+... .++ ..++.+++|+.|
T Consensus 195 ~N-~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~-----~n~~~-------~~~-~~~~~l~~l~~L 260 (394)
T COG4886 195 GN-KISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELS-----NNKLE-------DLP-ESIGNLSNLETL 260 (394)
T ss_pred CC-ccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccC-----Cceee-------ecc-chhcccccccee
Confidence 63 46666666666666666666666555555666666666666644 22211 112 236666777777
Q ss_pred eeeecCCchhHHhhhhhhhHHHhhccCCCceEEEecCC
Q 001999 656 IIEVLDPSDRRWKQNVESIAGEIAALEQLTTLHFYFPT 693 (984)
Q Consensus 656 ~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 693 (984)
++.....+ ....++.+.+|+.|+++.+.
T Consensus 261 ~~s~n~i~----------~i~~~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 261 DLSNNQIS----------SISSLGSLTNLRELDLSGNS 288 (394)
T ss_pred cccccccc----------ccccccccCccCEEeccCcc
Confidence 76642221 11126667777777776543
No 58
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.26 E-value=6.7e-07 Score=71.38 Aligned_cols=58 Identities=26% Similarity=0.401 Sum_probs=42.1
Q ss_pred CceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCC-cchhcccccCeEecCCC
Q 001999 520 CEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLP-PSISRLINLNALFLRSC 577 (984)
Q Consensus 520 ~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~c 577 (984)
++|++|++++|.+..+|...|.++++|++|++++|.++.+| ..+..+++|++|++++|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 46777777777777777766777777777777777777764 35667777777777765
No 59
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.25 E-value=3.3e-05 Score=84.69 Aligned_cols=172 Identities=16% Similarity=0.217 Sum_probs=110.9
Q ss_pred CCCCchHHHHHHHHHHhccCCc-cEEEEEcCCCChHHHHHHHhhhhcc----cCCCCCeEEEEE-eCCCCCHHHHHHHHH
Q 001999 154 SKFPSHKEYVETLEKHLSSGGL-KKICICGPLGVGKTTIMENSHDSVG----ESGRFDIIFWVN-VNTDGNISDIQEIIL 227 (984)
Q Consensus 154 ~~~vgr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~~~~~~~----~~~~F~~~~wv~-vs~~~~~~~i~~~i~ 227 (984)
.+++|.+..++.+.+++..++. ..+.++|+.|+||||+|+...+.+- ...|+|...|.. -+....+..+. ++.
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir-~~~ 82 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIR-NII 82 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHH-HHH
Confidence 4678999999999999987554 5668999999999999999555431 125667666655 23333443322 233
Q ss_pred HHhccCccccchHHHHHHHHHHHcCCcEEEEEECCCC--ccchhhh--ccccCCCCcEEEEEcCCccccc----cCCceE
Q 001999 228 ERLKVNAKELDNAQRADNISKELKDKRYVLFLDGVSS--EINFKEI--GIHDDHGRGKVVFACRSREFCW----QADDVI 299 (984)
Q Consensus 228 ~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~--~~~~~~~gs~ilvTTR~~~v~~----~~~~~~ 299 (984)
+.+.... ..+++-++|+|++.. ...+..+ .+..-..++.+|++|.+.+... .....+
T Consensus 83 ~~~~~~p---------------~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~ 147 (313)
T PRK05564 83 EEVNKKP---------------YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIY 147 (313)
T ss_pred HHHhcCc---------------ccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceee
Confidence 3322111 124566677777644 3445544 2334456788888886554332 556799
Q ss_pred EccCCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCCchHHHH
Q 001999 300 HVERLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGMPYMLKL 347 (984)
Q Consensus 300 ~l~~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~ 347 (984)
.+.+++.++....+.+....- -.+.++.++..++|.|.-+..
T Consensus 148 ~~~~~~~~~~~~~l~~~~~~~------~~~~~~~l~~~~~g~~~~a~~ 189 (313)
T PRK05564 148 KLNRLSKEEIEKFISYKYNDI------KEEEKKSAIAFSDGIPGKVEK 189 (313)
T ss_pred eCCCcCHHHHHHHHHHHhcCC------CHHHHHHHHHHcCCCHHHHHH
Confidence 999999999988887654211 133467888999999865543
No 60
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.25 E-value=6.4e-06 Score=85.66 Aligned_cols=174 Identities=14% Similarity=0.195 Sum_probs=113.9
Q ss_pred CCCCCCchHHHHH---HHHHHhccCCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 001999 152 HASKFPSHKEYVE---TLEKHLSSGGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEIILE 228 (984)
Q Consensus 152 ~~~~~vgr~~~~~---~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~ 228 (984)
...++||.++.+. -|.+++..+.++-+.+||++|+||||||+.....-+ .+ ...||..|..-.-..-.+.|++
T Consensus 136 tL~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk--~~--SyrfvelSAt~a~t~dvR~ife 211 (554)
T KOG2028|consen 136 TLDDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSK--KH--SYRFVELSATNAKTNDVRDIFE 211 (554)
T ss_pred hHHHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcC--CC--ceEEEEEeccccchHHHHHHHH
Confidence 3455677766543 345566678899999999999999999999555544 22 1567777776544444455554
Q ss_pred HhccCccccchHHHHHHHHHHHcCCcEEEEEECCCCccc-hhhhccccCCCCcEEEE--EcCCccccc-----cCCceEE
Q 001999 229 RLKVNAKELDNAQRADNISKELKDKRYVLFLDGVSSEIN-FKEIGIHDDHGRGKVVF--ACRSREFCW-----QADDVIH 300 (984)
Q Consensus 229 ~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~-~~~~~~~~~~~gs~ilv--TTR~~~v~~-----~~~~~~~ 300 (984)
+... ...+.++|.+|++|.|..-.. -..+.+|.-.+|.-++| ||.+...-- ..+.++-
T Consensus 212 ~aq~--------------~~~l~krkTilFiDEiHRFNksQQD~fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~Vfv 277 (554)
T KOG2028|consen 212 QAQN--------------EKSLTKRKTILFIDEIHRFNKSQQDTFLPHVENGDITLIGATTENPSFQLNAALLSRCRVFV 277 (554)
T ss_pred HHHH--------------HHhhhcceeEEEeHHhhhhhhhhhhcccceeccCceEEEecccCCCccchhHHHHhccceeE
Confidence 4221 123467899999999975432 23345787788888877 666654421 6778999
Q ss_pred ccCCChHHHHHHHHHHhC---CCC---CCCcc-----hHHHHHHHHHHcCCCch
Q 001999 301 VERLSPREAKKLFWEVVG---VNL---KKNPD-----IEQEADSIVEECGGMPY 343 (984)
Q Consensus 301 l~~L~~~~~~~Lf~~~~~---~~~---~~~~~-----l~~~~~~I~~~c~GlPl 343 (984)
|+.|+.++...++.+... ... ..-++ -..+.+-++..|.|-.-
T Consensus 278 LekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 278 LEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred eccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 999999999999988432 211 11111 23466667777777653
No 61
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.24 E-value=4.1e-05 Score=85.52 Aligned_cols=179 Identities=15% Similarity=0.111 Sum_probs=106.3
Q ss_pred CCCCCCchHHHHHHHHHHhccCCc-cEEEEEcCCCChHHHHHHHhhhhcccCC-------------------CCCeEEEE
Q 001999 152 HASKFPSHKEYVETLEKHLSSGGL-KKICICGPLGVGKTTIMENSHDSVGESG-------------------RFDIIFWV 211 (984)
Q Consensus 152 ~~~~~vgr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~~~~~~~~~~-------------------~F~~~~wv 211 (984)
.-.+++|.+..++.+.+.+..+++ ..+.++|+.|+||||+|+...+.+.-.. .+....++
T Consensus 14 ~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~ 93 (363)
T PRK14961 14 YFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEI 93 (363)
T ss_pred chhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEEe
Confidence 346789999999999999887654 4678999999999999999655542000 01111222
Q ss_pred EeCCCCCHHHHHHHHHHHhccCccccchHHHHHHHHHHHcCCcEEEEEECCCCcc--chhhh--ccccCCCCcEEEEEcC
Q 001999 212 NVNTDGNISDIQEIILERLKVNAKELDNAQRADNISKELKDKRYVLFLDGVSSEI--NFKEI--GIHDDHGRGKVVFACR 287 (984)
Q Consensus 212 ~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~--~~~~~--~~~~~~~gs~ilvTTR 287 (984)
..+....+.. .+++.+.+... -..+++-++|+|++.... .++.+ .+.......++|++|.
T Consensus 94 ~~~~~~~v~~-ir~i~~~~~~~---------------p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~ 157 (363)
T PRK14961 94 DAASRTKVEE-MREILDNIYYS---------------PSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATT 157 (363)
T ss_pred cccccCCHHH-HHHHHHHHhcC---------------cccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcC
Confidence 1111111111 11111111100 012456799999998754 23333 1223334566676664
Q ss_pred C-ccccc---cCCceEEccCCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCCchHHHHH
Q 001999 288 S-REFCW---QADDVIHVERLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGMPYMLKLI 348 (984)
Q Consensus 288 ~-~~v~~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~~ 348 (984)
+ ..+.. +....+++.+++.++..+.+.+.+.... ..--++.++.|++.++|.|-.+...
T Consensus 158 ~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g--~~i~~~al~~ia~~s~G~~R~al~~ 220 (363)
T PRK14961 158 DVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKES--IDTDEYALKLIAYHAHGSMRDALNL 220 (363)
T ss_pred ChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 4 33332 4567899999999999988887665431 1112457788999999988654433
No 62
>PLN03025 replication factor C subunit; Provisional
Probab=98.21 E-value=2.7e-05 Score=85.59 Aligned_cols=179 Identities=15% Similarity=0.197 Sum_probs=107.2
Q ss_pred cCCCCCCchHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHhhhhcccCCCCC-eEEEEEeCCCCCHHHHHHHHHHH
Q 001999 151 RHASKFPSHKEYVETLEKHLSSGGLKKICICGPLGVGKTTIMENSHDSVGESGRFD-IIFWVNVNTDGNISDIQEIILER 229 (984)
Q Consensus 151 ~~~~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~-~~~wv~vs~~~~~~~i~~~i~~~ 229 (984)
..-.+++|.++.++.|..++..+..+-+-++|++|+||||+|+...+.+.. ..|. ..+-+..++...... .+++++.
T Consensus 10 ~~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~-~~~~~~~~eln~sd~~~~~~-vr~~i~~ 87 (319)
T PLN03025 10 TKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLG-PNYKEAVLELNASDDRGIDV-VRNKIKM 87 (319)
T ss_pred CCHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhc-ccCccceeeecccccccHHH-HHHHHHH
Confidence 344678999999999988888777777889999999999999996555420 2332 222333333333222 2222222
Q ss_pred hccCccccchHHHHHHHHHHHcCCcEEEEEECCCCccc--hhhh--ccccCCCCcEEEEEcCCc-cccc---cCCceEEc
Q 001999 230 LKVNAKELDNAQRADNISKELKDKRYVLFLDGVSSEIN--FKEI--GIHDDHGRGKVVFACRSR-EFCW---QADDVIHV 301 (984)
Q Consensus 230 l~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~--~~~~--~~~~~~~gs~ilvTTR~~-~v~~---~~~~~~~l 301 (984)
+...... .-.++.-++|+|++..... ...+ .+..-...++++++|... .+.. .....+++
T Consensus 88 ~~~~~~~------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f 155 (319)
T PLN03025 88 FAQKKVT------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRF 155 (319)
T ss_pred HHhcccc------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccC
Confidence 1100000 0024567999999987532 1111 011223446677666432 2222 44568999
Q ss_pred cCCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCCchHH
Q 001999 302 ERLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGMPYML 345 (984)
Q Consensus 302 ~~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~GlPlai 345 (984)
.++++++....+.+.+....... -.+....|++.++|..-.+
T Consensus 156 ~~l~~~~l~~~L~~i~~~egi~i--~~~~l~~i~~~~~gDlR~a 197 (319)
T PLN03025 156 SRLSDQEILGRLMKVVEAEKVPY--VPEGLEAIIFTADGDMRQA 197 (319)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 99999999999988775441111 1457788999999876443
No 63
>PTZ00202 tuzin; Provisional
Probab=98.20 E-value=4.2e-05 Score=83.08 Aligned_cols=159 Identities=15% Similarity=0.123 Sum_probs=106.8
Q ss_pred cccCCCCCCchHHHHHHHHHHhcc---CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHH
Q 001999 149 VSRHASKFPSHKEYVETLEKHLSS---GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEI 225 (984)
Q Consensus 149 ~~~~~~~~vgr~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~ 225 (984)
.|.+.+.|+||+++...+...|.+ ...+++.|+|++|+|||||++....... + ..++.-.. ...+++..
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~--~qL~vNpr--g~eElLr~ 328 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----M--PAVFVDVR--GTEDTLRS 328 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----c--eEEEECCC--CHHHHHHH
Confidence 355678899999999999988864 3456999999999999999999655442 1 13332222 67999999
Q ss_pred HHHHhccCccccchHHHHHHHHHHH-----c-CCcEEEEEECCCCccchhhh-----ccccCCCCcEEEEEcCCccccc-
Q 001999 226 ILERLKVNAKELDNAQRADNISKEL-----K-DKRYVLFLDGVSSEINFKEI-----GIHDDHGRGKVVFACRSREFCW- 293 (984)
Q Consensus 226 i~~~l~~~~~~~~~~~~~~~l~~~L-----~-~kr~LlVlDdv~~~~~~~~~-----~~~~~~~gs~ilvTTR~~~v~~- 293 (984)
|+.+++.+.... ..++...|.+.+ . |++.+||+- +.+...+..+ .+....+-|.|++---.+....
T Consensus 329 LL~ALGV~p~~~-k~dLLrqIqeaLl~~~~e~GrtPVLII~-lreg~~l~rvyne~v~la~drr~ch~v~evpleslt~~ 406 (550)
T PTZ00202 329 VVKALGVPNVEA-CGDLLDFISEACRRAKKMNGETPLLVLK-LREGSSLQRVYNEVVALACDRRLCHVVIEVPLESLTIA 406 (550)
T ss_pred HHHHcCCCCccc-HHHHHHHHHHHHHHHHHhCCCCEEEEEE-ecCCCcHHHHHHHHHHHHccchhheeeeeehHhhcchh
Confidence 999999743222 133444443333 3 667777765 3333333322 3446677788887655554432
Q ss_pred ----cCCceEEccCCChHHHHHHHHHHh
Q 001999 294 ----QADDVIHVERLSPREAKKLFWEVV 317 (984)
Q Consensus 294 ----~~~~~~~l~~L~~~~~~~Lf~~~~ 317 (984)
..-+.|-+++++.++|.....+..
T Consensus 407 ~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 407 NTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred cccCccceeEecCCCCHHHHHHHHhhcc
Confidence 455679999999999988876653
No 64
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.20 E-value=3e-05 Score=92.32 Aligned_cols=180 Identities=13% Similarity=0.165 Sum_probs=110.1
Q ss_pred CCCCCCchHHHHHHHHHHhccCCccE-EEEEcCCCChHHHHHHHhhhhcccCCC-------------------CCeEEEE
Q 001999 152 HASKFPSHKEYVETLEKHLSSGGLKK-ICICGPLGVGKTTIMENSHDSVGESGR-------------------FDIIFWV 211 (984)
Q Consensus 152 ~~~~~vgr~~~~~~l~~~L~~~~~~v-i~I~G~gGiGKTtLa~~~~~~~~~~~~-------------------F~~~~wv 211 (984)
.-.+++|.+..+..|.+++..+++.- +.++|+.|+||||+|+...+.+.-... |.-.+++
T Consensus 14 tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEi 93 (944)
T PRK14949 14 TFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEV 93 (944)
T ss_pred CHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEe
Confidence 34678999999999999998766655 579999999999999996655531111 1112222
Q ss_pred EeCCCCCHHHHHHHHHHHhccCccccchHHHHHHHHHHHcCCcEEEEEECCCCcc--chhhh--ccccCCCCcEEEEEc-
Q 001999 212 NVNTDGNISDIQEIILERLKVNAKELDNAQRADNISKELKDKRYVLFLDGVSSEI--NFKEI--GIHDDHGRGKVVFAC- 286 (984)
Q Consensus 212 ~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~--~~~~~--~~~~~~~gs~ilvTT- 286 (984)
..+....+.. .++|.+.+. ..-..+++-++|+|++.... ....+ .+..-....++|++|
T Consensus 94 dAas~~kVDd-IReLie~v~---------------~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTT 157 (944)
T PRK14949 94 DAASRTKVDD-TRELLDNVQ---------------YRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATT 157 (944)
T ss_pred ccccccCHHH-HHHHHHHHH---------------hhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECC
Confidence 2211111111 122222111 01124778899999997652 33332 111223345555554
Q ss_pred CCccccc---cCCceEEccCCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCCchHHHHHH
Q 001999 287 RSREFCW---QADDVIHVERLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGMPYMLKLIG 349 (984)
Q Consensus 287 R~~~v~~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~~~ 349 (984)
....+.. .....+++.+|+.++....+.+.+... ....-.+....|++.++|.|--+..+.
T Consensus 158 e~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~E--gI~~edeAL~lIA~~S~Gd~R~ALnLL 221 (944)
T PRK14949 158 DPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQE--QLPFEAEALTLLAKAANGSMRDALSLT 221 (944)
T ss_pred CchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4444443 556899999999999999998876543 112234578889999999996554443
No 65
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.20 E-value=1.3e-05 Score=77.19 Aligned_cols=121 Identities=20% Similarity=0.139 Sum_probs=73.0
Q ss_pred CchHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHHHHHhccCccc
Q 001999 157 PSHKEYVETLEKHLSSGGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEIILERLKVNAKE 236 (984)
Q Consensus 157 vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~ 236 (984)
+|++..+..+...+.....+.+.|+|.+|+||||+|+....... ..-..++++..++..........+...
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~------- 71 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLLEGLVVAELFGHF------- 71 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhhhhhhhHHHHHhhhh-------
Confidence 47888999999998876778999999999999999999666553 222346666655533322211111100
Q ss_pred cchHHHHHHHHHHHcCCcEEEEEECCCCc-----cchhhhccc-c----CCCCcEEEEEcCCcc
Q 001999 237 LDNAQRADNISKELKDKRYVLFLDGVSSE-----INFKEIGIH-D----DHGRGKVVFACRSRE 290 (984)
Q Consensus 237 ~~~~~~~~~l~~~L~~kr~LlVlDdv~~~-----~~~~~~~~~-~----~~~gs~ilvTTR~~~ 290 (984)
............++.+||+||++.. ..+...... . ...+..||+||....
T Consensus 72 ----~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 ----LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ----hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0011112223457889999999863 112221111 1 146788888887543
No 66
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.20 E-value=0.00014 Score=80.34 Aligned_cols=179 Identities=13% Similarity=0.115 Sum_probs=106.0
Q ss_pred CCCCCCchHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCe-EEEEEeCCCCCHHHHHHHHHHHh
Q 001999 152 HASKFPSHKEYVETLEKHLSSGGLKKICICGPLGVGKTTIMENSHDSVGESGRFDI-IFWVNVNTDGNISDIQEIILERL 230 (984)
Q Consensus 152 ~~~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~-~~wv~vs~~~~~~~i~~~i~~~l 230 (984)
.-.+++|+++.++.+..++.....+.+.++|..|+||||+|+........ ..+.. .+-+..+.......+. +.+..+
T Consensus 15 ~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~-~~~~~~~i~~~~~~~~~~~~~~-~~i~~~ 92 (319)
T PRK00440 15 TLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYG-EDWRENFLELNASDERGIDVIR-NKIKEF 92 (319)
T ss_pred cHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcC-CccccceEEeccccccchHHHH-HHHHHH
Confidence 34668999999999999998877777899999999999999996555421 22211 1122222222222111 111111
Q ss_pred ccCccccchHHHHHHHHHHHcCCcEEEEEECCCCcc--chhhh--ccccCCCCcEEEEEcCCc-cccc---cCCceEEcc
Q 001999 231 KVNAKELDNAQRADNISKELKDKRYVLFLDGVSSEI--NFKEI--GIHDDHGRGKVVFACRSR-EFCW---QADDVIHVE 302 (984)
Q Consensus 231 ~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~--~~~~~--~~~~~~~gs~ilvTTR~~-~v~~---~~~~~~~l~ 302 (984)
....+ .-...+-++++|++.... ....+ .+......+++|+++... .+.. .....+++.
T Consensus 93 ~~~~~-------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~ 159 (319)
T PRK00440 93 ARTAP-------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFS 159 (319)
T ss_pred HhcCC-------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeC
Confidence 10000 001345689999986542 22222 122223446777766432 2222 345578999
Q ss_pred CCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCCchHHHH
Q 001999 303 RLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGMPYMLKL 347 (984)
Q Consensus 303 ~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~ 347 (984)
+++.++....+.+.+.... ..--++....+++.++|.+.-+..
T Consensus 160 ~l~~~ei~~~l~~~~~~~~--~~i~~~al~~l~~~~~gd~r~~~~ 202 (319)
T PRK00440 160 PLKKEAVAERLRYIAENEG--IEITDDALEAIYYVSEGDMRKAIN 202 (319)
T ss_pred CCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 9999999888888775431 111245788899999998855433
No 67
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.19 E-value=3.4e-07 Score=100.50 Aligned_cols=124 Identities=27% Similarity=0.356 Sum_probs=104.7
Q ss_pred hhccCeEeeeccCCCCCCCCCCCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCCcchhcccccCeEecC
Q 001999 496 EWKDTKKLSLFGFPSSTLPDMPNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLPPSISRLINLNALFLR 575 (984)
Q Consensus 496 ~~~~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~ 575 (984)
....+..+.++.|.++.+|.-.-.--|+.|.+++|.+..+|+. ++...+|..||.+.|.+..+|..++.+..|+.|.++
T Consensus 119 ~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNNkl~~lp~~-ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vr 197 (722)
T KOG0532|consen 119 NLEALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNNKLTSLPEE-IGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVR 197 (722)
T ss_pred hhhHHHHhhhccchhhcCChhhhcCcceeEEEecCccccCCcc-cccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHh
Confidence 3455666777778888777654455689999999999999988 678889999999999999999999999999999999
Q ss_pred CCcccccCchhhhccCCCcEEEecCccccccchhhhccCCCCeeecc
Q 001999 576 SCSLLFQLPKEIRYLQKLEILDVRHTRIQCLPSEIGQLIKLKCLRVS 622 (984)
Q Consensus 576 ~c~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~ 622 (984)
.| .+..+|..++ .-.|..||++.|++..+|..|.+|+.|++|-|.
T Consensus 198 Rn-~l~~lp~El~-~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~Le 242 (722)
T KOG0532|consen 198 RN-HLEDLPEELC-SLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLE 242 (722)
T ss_pred hh-hhhhCCHHHh-CCceeeeecccCceeecchhhhhhhhheeeeec
Confidence 84 5788888888 457889999999999999999999999999986
No 68
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.19 E-value=2.9e-06 Score=91.74 Aligned_cols=100 Identities=18% Similarity=0.267 Sum_probs=68.0
Q ss_pred HHHHHhcc-CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCC--CHHHHHHHHHHHhccCc-cccch-
Q 001999 165 TLEKHLSS-GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDG--NISDIQEIILERLKVNA-KELDN- 239 (984)
Q Consensus 165 ~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~--~~~~i~~~i~~~l~~~~-~~~~~- 239 (984)
++++.+.. .......|+|++|+||||||++++..+.. .+|+.++||.+++.+ ++.++++.|...+-... +....
T Consensus 158 rvID~l~PIGkGQR~lIvgppGvGKTTLaK~Ian~I~~-nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~ 236 (416)
T PRK09376 158 RIIDLIAPIGKGQRGLIVAPPKAGKTVLLQNIANSITT-NHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAER 236 (416)
T ss_pred eeeeeecccccCceEEEeCCCCCChhHHHHHHHHHHHh-hcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHH
Confidence 34455544 56678899999999999999997776652 489999999999998 88888888874332221 11111
Q ss_pred ----HHHHHHHHHH--HcCCcEEEEEECCCCc
Q 001999 240 ----AQRADNISKE--LKDKRYVLFLDGVSSE 265 (984)
Q Consensus 240 ----~~~~~~l~~~--L~~kr~LlVlDdv~~~ 265 (984)
....-...++ -.|++++|++|++...
T Consensus 237 ~~~~a~~~ie~Ae~~~e~G~dVlL~iDsItR~ 268 (416)
T PRK09376 237 HVQVAEMVIEKAKRLVEHGKDVVILLDSITRL 268 (416)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEEChHHH
Confidence 1111122222 2589999999999643
No 69
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.17 E-value=1.2e-05 Score=86.44 Aligned_cols=292 Identities=17% Similarity=0.174 Sum_probs=187.8
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhhcccCCCCC-eEEEEEeCCCCCHHHHHHHHHHHhccCccccchHHHHHHHHHHHcC
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDSVGESGRFD-IIFWVNVNTDGNISDIQEIILERLKVNAKELDNAQRADNISKELKD 252 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~-~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~ 252 (984)
..+-+.++|.|||||||++-...+ ++ ..|. .+.+|....-.|...+.-.....++...... +.....+...+.+
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~--~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g--~~~~~~~~~~~~~ 87 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AA--SEYADGVAFVDLAPITDPALVFPTLAGALGLHVQPG--DSAVDTLVRRIGD 87 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-Hh--hhcccceeeeeccccCchhHhHHHHHhhcccccccc--hHHHHHHHHHHhh
Confidence 467899999999999999999777 66 7784 5556666665666666666666666554331 3455567777889
Q ss_pred CcEEEEEECCCCccchh-hh--ccccCCCCcEEEEEcCCccccccCCceEEccCCChH-HHHHHHHHHhCCC---CCCCc
Q 001999 253 KRYVLFLDGVSSEINFK-EI--GIHDDHGRGKVVFACRSREFCWQADDVIHVERLSPR-EAKKLFWEVVGVN---LKKNP 325 (984)
Q Consensus 253 kr~LlVlDdv~~~~~~~-~~--~~~~~~~gs~ilvTTR~~~v~~~~~~~~~l~~L~~~-~~~~Lf~~~~~~~---~~~~~ 325 (984)
+|.++|+||.....+-- .. .+-.+...-.|+.|+|..... .......+.+|+.. ++.++|...+... ..-..
T Consensus 88 rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~-~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l~~ 166 (414)
T COG3903 88 RRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILV-AGEVHRRVPSLSLFDEAIELFVCRAVLVALSFWLTD 166 (414)
T ss_pred hhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcc-cccccccCCccccCCchhHHHHHHHHHhccceeecC
Confidence 99999999986643211 11 111334445778888765543 34456677777765 7888987665322 11223
Q ss_pred chHHHHHHHHHHcCCCchHHHHHHHHhhcCccHHHHHHHHH----HhhcCCccccccHHHHHHHHHHHHhcChHHHHHHH
Q 001999 326 DIEQEADSIVEECGGMPYMLKLIGKELVNQSEVAIWRATVD----DLRSTSSEEKKELEEVYRFFKLVYKNLSSVQQHCL 401 (984)
Q Consensus 326 ~l~~~~~~I~~~c~GlPlai~~~~~~l~~~~~~~~w~~~l~----~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf 401 (984)
.-...+.+|.++..|.|++|...++..+.- ...+-...++ .+..-...-........+.+.+||.-|....+.-|
T Consensus 167 ~~~a~v~~icr~ldg~~laielaaarv~sl-~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe~~~~ 245 (414)
T COG3903 167 DNAAAVAEICRRLDGIPLAIELAAARVRSL-SPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWERALF 245 (414)
T ss_pred CchHHHHHHHHHhhcchHHHHHHHHHHHhc-CHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHHHHHh
Confidence 335678999999999999999999887765 2222222111 11111000011112377889999999999999999
Q ss_pred hhhcccCCCCccCHHHHHHHHhhcCCCCccCcccchhhHHHHHHHHHhhccccccccc--ccccchHHHHHHHHHHHhhh
Q 001999 402 LGWAIFPTGLEISQDYIIDCWAAQKFLPRFGKIGDARDTGCLILDKFEKKSLLQKQSK--EKRYKMIEFFQRAALRIANE 479 (984)
Q Consensus 402 l~~s~fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~--~~~~~mHdlv~~~a~~~~~~ 479 (984)
--++.|...+.-. ...|.+-|-.. .........-+..+++++++...+. ...|+.-+-+|.|+..+-.+
T Consensus 246 ~rLa~~~g~f~~~----l~~~~a~g~~~-----~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~YalaeL~r 316 (414)
T COG3903 246 GRLAVFVGGFDLG----LALAVAAGADV-----DVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAELHR 316 (414)
T ss_pred cchhhhhhhhccc----HHHHHhcCCcc-----ccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 9999998876644 23444443221 1123445556778888888765443 44677777888888776665
Q ss_pred cC
Q 001999 480 RD 481 (984)
Q Consensus 480 ~~ 481 (984)
..
T Consensus 317 ~~ 318 (414)
T COG3903 317 SG 318 (414)
T ss_pred hh
Confidence 43
No 70
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.17 E-value=2.2e-05 Score=94.00 Aligned_cols=168 Identities=16% Similarity=0.237 Sum_probs=100.8
Q ss_pred CCCCCCchHHHHH---HHHHHhccCCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 001999 152 HASKFPSHKEYVE---TLEKHLSSGGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEIILE 228 (984)
Q Consensus 152 ~~~~~vgr~~~~~---~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~ 228 (984)
.-++++|.+..+. .+.+.+..+....+.++|++|+||||+|+...+... .+|.. ++.+. ..+..+ +
T Consensus 26 tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~--~~f~~---lna~~-~~i~di-r---- 94 (725)
T PRK13341 26 TLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTR--AHFSS---LNAVL-AGVKDL-R---- 94 (725)
T ss_pred cHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhc--Cccee---ehhhh-hhhHHH-H----
Confidence 3467899988774 466677777777889999999999999999777665 55511 11110 011111 1
Q ss_pred HhccCccccchHHHHHHHHHHH--cCCcEEEEEECCCCcc--chhhhccccCCCCcEEEEE--cCCcc--ccc---cCCc
Q 001999 229 RLKVNAKELDNAQRADNISKEL--KDKRYVLFLDGVSSEI--NFKEIGIHDDHGRGKVVFA--CRSRE--FCW---QADD 297 (984)
Q Consensus 229 ~l~~~~~~~~~~~~~~~l~~~L--~~kr~LlVlDdv~~~~--~~~~~~~~~~~~gs~ilvT--TR~~~--v~~---~~~~ 297 (984)
+......+.+ .+++.+||+||++... ..+.+ ++.-..|+.++|+ |.+.. +.. ....
T Consensus 95 ------------~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaL-L~~lE~g~IiLI~aTTenp~~~l~~aL~SR~~ 161 (725)
T PRK13341 95 ------------AEVDRAKERLERHGKRTILFIDEVHRFNKAQQDAL-LPWVENGTITLIGATTENPYFEVNKALVSRSR 161 (725)
T ss_pred ------------HHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHH-HHHhcCceEEEEEecCCChHhhhhhHhhcccc
Confidence 1111121222 2567899999997543 33333 3333346666664 33321 111 3456
Q ss_pred eEEccCCChHHHHHHHHHHhCCC-----CCCCcchHHHHHHHHHHcCCCch
Q 001999 298 VIHVERLSPREAKKLFWEVVGVN-----LKKNPDIEQEADSIVEECGGMPY 343 (984)
Q Consensus 298 ~~~l~~L~~~~~~~Lf~~~~~~~-----~~~~~~l~~~~~~I~~~c~GlPl 343 (984)
.+.+++++.++...++.+.+... .....--++....|++.+.|..-
T Consensus 162 v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 162 LFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred ceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 89999999999999998876411 00111224567888888888643
No 71
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.15 E-value=0.00012 Score=84.62 Aligned_cols=182 Identities=14% Similarity=0.133 Sum_probs=106.5
Q ss_pred CCCCCCchHHHHHHHHHHhccCCcc-EEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCC-------CCHHHHH
Q 001999 152 HASKFPSHKEYVETLEKHLSSGGLK-KICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTD-------GNISDIQ 223 (984)
Q Consensus 152 ~~~~~vgr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~-------~~~~~i~ 223 (984)
...+++|.+..++.|..++..+... .+.++|+.|+||||+|+...+.+.-.+.+....|.|.+.. .|+..
T Consensus 12 ~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~e-- 89 (504)
T PRK14963 12 TFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLE-- 89 (504)
T ss_pred CHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEE--
Confidence 3457899999999999998876654 5699999999999999996555531122222222221110 00000
Q ss_pred HHHHHHhccCccccchHHHHHHHHHHH-----cCCcEEEEEECCCCcc--chhhh--ccccCCCCcEEEEEc-CCccccc
Q 001999 224 EIILERLKVNAKELDNAQRADNISKEL-----KDKRYVLFLDGVSSEI--NFKEI--GIHDDHGRGKVVFAC-RSREFCW 293 (984)
Q Consensus 224 ~~i~~~l~~~~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~~--~~~~~--~~~~~~~gs~ilvTT-R~~~v~~ 293 (984)
+... ....-+.+..+.+.+ .+++-++|+|+++... .+..+ .+........+|++| ....+..
T Consensus 90 ------l~~~--~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~ 161 (504)
T PRK14963 90 ------IDAA--SNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPP 161 (504)
T ss_pred ------eccc--ccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCCh
Confidence 0000 000011111222222 3567799999997643 33333 122222344555444 4444433
Q ss_pred ---cCCceEEccCCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCCchHH
Q 001999 294 ---QADDVIHVERLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGMPYML 345 (984)
Q Consensus 294 ---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~GlPlai 345 (984)
.....+++.+++.++..+.+.+.+.... ..--++....|++.++|.+--+
T Consensus 162 ~I~SRc~~~~f~~ls~~el~~~L~~i~~~eg--i~i~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 162 TILSRTQHFRFRRLTEEEIAGKLRRLLEAEG--REAEPEALQLVARLADGAMRDA 214 (504)
T ss_pred HHhcceEEEEecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHH
Confidence 5567899999999999999998875431 1112457889999999988544
No 72
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.13 E-value=1.5e-06 Score=99.18 Aligned_cols=172 Identities=28% Similarity=0.333 Sum_probs=131.9
Q ss_pred eeeccCCC-CCCCCCCCcCceeEEEecCcccCCCcchHhhcCC-CccEEeccCCCCccCCcchhcccccCeEecCCCccc
Q 001999 503 LSLFGFPS-STLPDMPNCCEILTLIVEGRRLEKLPMSFFEYMC-HLQLLDLHDTSIRCLPPSISRLINLNALFLRSCSLL 580 (984)
Q Consensus 503 l~l~~~~~-~~l~~~~~~~~L~~L~l~~~~l~~l~~~~~~~l~-~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l 580 (984)
+....+.. .........+.++.|.+.++.+.+++.. ...+. +|+.|++++|.+..+|..++.+++|+.|++++| .+
T Consensus 98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~-~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N-~l 175 (394)
T COG4886 98 LDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPL-IGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN-DL 175 (394)
T ss_pred eeccccccccCchhhhcccceeEEecCCcccccCccc-cccchhhcccccccccchhhhhhhhhccccccccccCCc-hh
Confidence 44445554 3333445668899999999999999886 45553 899999999999999988999999999999995 58
Q ss_pred ccCchhhhccCCCcEEEecCccccccchhhhccCCCCeeecccccccCccccCCCCCCcccchhhhhccccccceeeeec
Q 001999 581 FQLPKEIRYLQKLEILDVRHTRIQCLPSEIGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSNIISKLCLLEELIIEVL 660 (984)
Q Consensus 581 ~~lp~~i~~L~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~~L~~L~~L~l~~~ 660 (984)
..+|...+.+.+|+.|+++++++..+|..++.+..|+.|.++ .+.... ++. .+.+++++..|.+...
T Consensus 176 ~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~-----~N~~~~-------~~~-~~~~~~~l~~l~l~~n 242 (394)
T COG4886 176 SDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLS-----NNSIIE-------LLS-SLSNLKNLSGLELSNN 242 (394)
T ss_pred hhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhc-----CCccee-------cch-hhhhcccccccccCCc
Confidence 899988889999999999999999999988888889999998 553332 332 3777888877775431
Q ss_pred CCchhHHhhhhhhhHHHhhccCCCceEEEecCCcchhh
Q 001999 661 DPSDRRWKQNVESIAGEIAALEQLTTLHFYFPTIKCFK 698 (984)
Q Consensus 661 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 698 (984)
. .......+..+.+|+.|+++.+....+.
T Consensus 243 ~---------~~~~~~~~~~l~~l~~L~~s~n~i~~i~ 271 (394)
T COG4886 243 K---------LEDLPESIGNLSNLETLDLSNNQISSIS 271 (394)
T ss_pred e---------eeeccchhccccccceeccccccccccc
Confidence 1 1122456777888999999866555443
No 73
>PLN03150 hypothetical protein; Provisional
Probab=98.13 E-value=7.1e-06 Score=98.26 Aligned_cols=101 Identities=25% Similarity=0.396 Sum_probs=71.9
Q ss_pred ceeEEEecCcccC-CCcchHhhcCCCccEEeccCCCCc-cCCcchhcccccCeEecCCCcccccCchhhhccCCCcEEEe
Q 001999 521 EILTLIVEGRRLE-KLPMSFFEYMCHLQLLDLHDTSIR-CLPPSISRLINLNALFLRSCSLLFQLPKEIRYLQKLEILDV 598 (984)
Q Consensus 521 ~L~~L~l~~~~l~-~l~~~~~~~l~~Lr~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l 598 (984)
.++.|+|++|.+. .+|.. +..+++|+.|+|++|.+. .+|..++.+.+|++|+|++|.....+|..+++|++|++|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~-i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPND-ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHH-HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 4677777777766 34444 777778888888887776 56777778888888888877655567777788888888888
Q ss_pred cCcccc-ccchhhhcc-CCCCeeecc
Q 001999 599 RHTRIQ-CLPSEIGQL-IKLKCLRVS 622 (984)
Q Consensus 599 ~~~~l~-~lp~~~~~L-~~L~~L~l~ 622 (984)
++|++. .+|..++.+ .++..+++.
T Consensus 498 s~N~l~g~iP~~l~~~~~~~~~l~~~ 523 (623)
T PLN03150 498 NGNSLSGRVPAALGGRLLHRASFNFT 523 (623)
T ss_pred cCCcccccCChHHhhccccCceEEec
Confidence 877776 677766643 455566665
No 74
>PRK08727 hypothetical protein; Validated
Probab=98.13 E-value=4.8e-05 Score=79.33 Aligned_cols=163 Identities=12% Similarity=0.040 Sum_probs=96.1
Q ss_pred CCCch-HHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHHHHHhccC
Q 001999 155 KFPSH-KEYVETLEKHLSSGGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEIILERLKVN 233 (984)
Q Consensus 155 ~~vgr-~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~ 233 (984)
+|++. ......+...........+.|+|..|+|||+|++....... +....++|+++.+ ....+.+
T Consensus 20 ~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~--~~~~~~~y~~~~~------~~~~~~~----- 86 (233)
T PRK08727 20 SYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAE--QAGRSSAYLPLQA------AAGRLRD----- 86 (233)
T ss_pred hccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEEeHHH------hhhhHHH-----
Confidence 34443 33444443433344456799999999999999999555544 3333556776432 1111110
Q ss_pred ccccchHHHHHHHHHHHcCCcEEEEEECCCCc---cchhhhccc----cCCCCcEEEEEcCCccc------cc-----cC
Q 001999 234 AKELDNAQRADNISKELKDKRYVLFLDGVSSE---INFKEIGIH----DDHGRGKVVFACRSREF------CW-----QA 295 (984)
Q Consensus 234 ~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~---~~~~~~~~~----~~~~gs~ilvTTR~~~v------~~-----~~ 295 (984)
..+.+ .+.-+||+||+... ..|....+. ...+|..||+|++...- .. ..
T Consensus 87 ------------~~~~l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~ 153 (233)
T PRK08727 87 ------------ALEAL-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQ 153 (233)
T ss_pred ------------HHHHH-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhc
Confidence 11112 23358999999643 234333222 12346679999985321 01 34
Q ss_pred CceEEccCCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCCchHH
Q 001999 296 DDVIHVERLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGMPYML 345 (984)
Q Consensus 296 ~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~GlPlai 345 (984)
...+++++++.++-..++++++... ...--++...-|++.++|..-.+
T Consensus 154 ~~~~~l~~~~~e~~~~iL~~~a~~~--~l~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 154 CIRIGLPVLDDVARAAVLRERAQRR--GLALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred CceEEecCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHhCCCCHHHH
Confidence 6789999999999999999876543 11122457778888887765444
No 75
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.13 E-value=4.3e-06 Score=78.92 Aligned_cols=115 Identities=20% Similarity=0.255 Sum_probs=75.4
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhhccc---CCCCCeEEEEEeCCCCCHHHHHHHHHHHhccCccc-cchHHHHHHHHHH
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDSVGE---SGRFDIIFWVNVNTDGNISDIQEIILERLKVNAKE-LDNAQRADNISKE 249 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~---~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~-~~~~~~~~~l~~~ 249 (984)
+.+++.|+|.+|+|||++++...+.... ...-..++|+.+....+...+...|+++++..... .+.+++...+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 3468899999999999999994443320 01134577999988889999999999999877666 3336677888888
Q ss_pred HcCCc-EEEEEECCCCc-c--chhhhccccCCCCcEEEEEcCC
Q 001999 250 LKDKR-YVLFLDGVSSE-I--NFKEIGIHDDHGRGKVVFACRS 288 (984)
Q Consensus 250 L~~kr-~LlVlDdv~~~-~--~~~~~~~~~~~~gs~ilvTTR~ 288 (984)
+...+ .+||+|++... . .++.+.--.+..+.+||++-+.
T Consensus 83 l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLFSDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHHTHHHHHHHHHHTCSCBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcCCHHHHHHHHHHHhCCCCeEEEEECh
Confidence 87655 59999999764 2 1222211123666677776543
No 76
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=2e-07 Score=94.20 Aligned_cols=186 Identities=16% Similarity=0.107 Sum_probs=118.1
Q ss_pred cccceEEccCCCCchhH----HHHHhhhccceeeccccccccccccccccccccCeeEEcccCCceEEecCCCCCcccCC
Q 001999 744 AEKHLRFSAGVEEIPGE----FLTILKQAYSFELIGSQYAVNLSNFGVDNLVRLQACVIEDCNEMTSIIDGNHRGVVPFQ 819 (984)
Q Consensus 744 ~L~~L~l~~~~~~l~~~----~~~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~ 819 (984)
++++|++++ ..++.. ++...++|+.|.+.|...-..+.. .+..-.+|+.|+|+.|+.++.-.... ....++
T Consensus 186 Rlq~lDLS~--s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~-~iAkN~~L~~lnlsm~sG~t~n~~~l--l~~scs 260 (419)
T KOG2120|consen 186 RLQHLDLSN--SVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVN-TIAKNSNLVRLNLSMCSGFTENALQL--LLSSCS 260 (419)
T ss_pred hhHHhhcch--hheeHHHHHHHHHHHHhhhhccccccccCcHHHH-HHhccccceeeccccccccchhHHHH--HHHhhh
Confidence 366777762 122211 344555666666655432222211 34456799999999999876543221 123468
Q ss_pred CcceeecccccccccccccccccCcccccceeeeccccccccc-CcHHHHhhcccccEEeecccchhHHHhhcCcccccC
Q 001999 820 GLNNLHIKNLPKLMHIWVGPIASGSLNSLRTLRVKICHSIKTL-FSKEMVAQLNELQDLQVEDCQMIEEIVEAGTVLAIG 898 (984)
Q Consensus 820 ~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~c~~L~~l-~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~ 898 (984)
.|.+|+|+.|.-......... ..--++|+.|+|++|..--.. -.......+|+|.+|++++|..++. +....+.
T Consensus 261 ~L~~LNlsWc~l~~~~Vtv~V-~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~----~~~~~~~ 335 (419)
T KOG2120|consen 261 RLDELNLSWCFLFTEKVTVAV-AHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN----DCFQEFF 335 (419)
T ss_pred hHhhcCchHhhccchhhhHHH-hhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc----hHHHHHH
Confidence 899999999865554311111 123488999999999532111 0123456899999999999988752 3334567
Q ss_pred CCCcccEeeccCCccccccCCCCccCCCCcceEeecccccc
Q 001999 899 EFPKLKTLELIDLPKLSTICNSLLLPWPSLETIKIKACNAL 939 (984)
Q Consensus 899 ~~~~L~~L~L~~c~~L~~i~~~~~~~l~sL~~L~i~~C~~L 939 (984)
.|+.|++|.++.|..+---....+...|+|.+|++.||-.=
T Consensus 336 kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vsd 376 (419)
T KOG2120|consen 336 KFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVSD 376 (419)
T ss_pred hcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccCc
Confidence 89999999999998653222224567899999999997543
No 77
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=9.9e-05 Score=81.53 Aligned_cols=194 Identities=17% Similarity=0.207 Sum_probs=125.9
Q ss_pred CCCCchHHHHHHHHHHhcc----CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 001999 154 SKFPSHKEYVETLEKHLSS----GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEIILER 229 (984)
Q Consensus 154 ~~~vgr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~ 229 (984)
..+.+|+++++++...|.. ....-+.|+|..|+|||+.++.+.+++++...=...++|++-...+...+...|+++
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~ 96 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNK 96 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHH
Confidence 4489999999999988764 233338999999999999999977777622111127899998889999999999999
Q ss_pred hcc-CccccchHHHHHHHHHHHc--CCcEEEEEECCCCccch--h---hh-ccccCCCCcEEEEE--cCCccccc-----
Q 001999 230 LKV-NAKELDNAQRADNISKELK--DKRYVLFLDGVSSEINF--K---EI-GIHDDHGRGKVVFA--CRSREFCW----- 293 (984)
Q Consensus 230 l~~-~~~~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~~~~--~---~~-~~~~~~~gs~ilvT--TR~~~v~~----- 293 (984)
++. +.......+....+.+.+. ++.+++|||++....+- + .+ ..+. ...++|++- +-+.....
T Consensus 97 ~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~-~~~~~v~vi~i~n~~~~~~~ld~r 175 (366)
T COG1474 97 LGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPG-ENKVKVSIIAVSNDDKFLDYLDPR 175 (366)
T ss_pred cCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcc-ccceeEEEEEEeccHHHHHHhhhh
Confidence 962 2223344667777777775 58999999999764322 1 11 2222 225555443 22222111
Q ss_pred ----cCCceEEccCCChHHHHHHHHHHhCCC---CCCCcchHHHHHHHHHHcCCC-chHHHHH
Q 001999 294 ----QADDVIHVERLSPREAKKLFWEVVGVN---LKKNPDIEQEADSIVEECGGM-PYMLKLI 348 (984)
Q Consensus 294 ----~~~~~~~l~~L~~~~~~~Lf~~~~~~~---~~~~~~l~~~~~~I~~~c~Gl-Plai~~~ 348 (984)
-....+..+|.+.+|-.+.+..++... ....++.-++...++..-+|- =.|+..+
T Consensus 176 v~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidil 238 (366)
T COG1474 176 VKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDIL 238 (366)
T ss_pred hhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHH
Confidence 223348899999999999998877543 333444444455555555543 2444433
No 78
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.10 E-value=0.00021 Score=82.73 Aligned_cols=179 Identities=16% Similarity=0.173 Sum_probs=109.3
Q ss_pred CCCCCCchHHHHHHHHHHhccCC-ccEEEEEcCCCChHHHHHHHhhhhcccC-------------------CCCCeEEEE
Q 001999 152 HASKFPSHKEYVETLEKHLSSGG-LKKICICGPLGVGKTTIMENSHDSVGES-------------------GRFDIIFWV 211 (984)
Q Consensus 152 ~~~~~vgr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~~~~~~~~~-------------------~~F~~~~wv 211 (984)
.-.+++|.+..+..|.+++..++ ...+.++|+.|+||||+|+...+.+.-. +.|.-.+.+
T Consensus 13 tFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEI 92 (702)
T PRK14960 13 NFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEI 92 (702)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEe
Confidence 34678999999999999998765 4577899999999999999855444200 111122223
Q ss_pred EeCCCCCHHHHHHHHHHHhccCccccchHHHHHHHHHHHcCCcEEEEEECCCCcc--chhhh--ccccCCCCcEEEEEcC
Q 001999 212 NVNTDGNISDIQEIILERLKVNAKELDNAQRADNISKELKDKRYVLFLDGVSSEI--NFKEI--GIHDDHGRGKVVFACR 287 (984)
Q Consensus 212 ~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~--~~~~~--~~~~~~~gs~ilvTTR 287 (984)
..+....+..+ +++++.+. ..-..+++-++|+|++.... ....+ .+..-..+.++|++|.
T Consensus 93 DAAs~~~VddI-Reli~~~~---------------y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTt 156 (702)
T PRK14960 93 DAASRTKVEDT-RELLDNVP---------------YAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATT 156 (702)
T ss_pred cccccCCHHHH-HHHHHHHh---------------hhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEEC
Confidence 22222122111 11111110 01123677799999998643 22222 1222234567777665
Q ss_pred Cc-cccc---cCCceEEccCCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCCchHHHHH
Q 001999 288 SR-EFCW---QADDVIHVERLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGMPYMLKLI 348 (984)
Q Consensus 288 ~~-~v~~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~~ 348 (984)
+. .+.. .....+++.+++.++....+.+.+.... ..--.+....|++.++|.+..+..+
T Consensus 157 d~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEg--I~id~eAL~~IA~~S~GdLRdALnL 219 (702)
T PRK14960 157 DPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQ--IAADQDAIWQIAESAQGSLRDALSL 219 (702)
T ss_pred ChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 43 3322 6678999999999999999988775441 1222456788999999988555433
No 79
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.08 E-value=6.1e-05 Score=78.66 Aligned_cols=163 Identities=9% Similarity=0.064 Sum_probs=96.8
Q ss_pred Cch-HHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHHHHHhccCcc
Q 001999 157 PSH-KEYVETLEKHLSSGGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEIILERLKVNAK 235 (984)
Q Consensus 157 vgr-~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~ 235 (984)
+|. ...+..+.++......+.+.|+|+.|+|||+|++...+.+. ..-..+.++.+..... .
T Consensus 26 ~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~--~~~~~v~y~~~~~~~~---~------------- 87 (235)
T PRK08084 26 PGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELS--QRGRAVGYVPLDKRAW---F------------- 87 (235)
T ss_pred cCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEEHHHHhh---h-------------
Confidence 353 33455555555455567899999999999999998555544 2223456666543100 0
Q ss_pred ccchHHHHHHHHHHHcCCcEEEEEECCCCc---cchhhhccc----cCCCC-cEEEEEcCCcccc------c-----cCC
Q 001999 236 ELDNAQRADNISKELKDKRYVLFLDGVSSE---INFKEIGIH----DDHGR-GKVVFACRSREFC------W-----QAD 296 (984)
Q Consensus 236 ~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~---~~~~~~~~~----~~~~g-s~ilvTTR~~~v~------~-----~~~ 296 (984)
.. .+.+.+.. .-+|++||+... ..|+...+. .-..| .++|+||+...-. . ...
T Consensus 88 ---~~----~~~~~~~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g 159 (235)
T PRK08084 88 ---VP----EVLEGMEQ-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWG 159 (235)
T ss_pred ---hH----HHHHHhhh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCC
Confidence 01 11112211 248999999653 345433211 11233 4799999865221 1 556
Q ss_pred ceEEccCCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCCchHHHH
Q 001999 297 DVIHVERLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGMPYMLKL 347 (984)
Q Consensus 297 ~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~ 347 (984)
.+++++++++++-.+.+++++... ...--+++..-|++.+.|..-++..
T Consensus 160 ~~~~l~~~~~~~~~~~l~~~a~~~--~~~l~~~v~~~L~~~~~~d~r~l~~ 208 (235)
T PRK08084 160 QIYKLQPLSDEEKLQALQLRARLR--GFELPEDVGRFLLKRLDREMRTLFM 208 (235)
T ss_pred ceeeecCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHhhcCCHHHHHH
Confidence 799999999999999998866433 1122255778888888776544433
No 80
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=1.2e-06 Score=93.50 Aligned_cols=127 Identities=19% Similarity=0.194 Sum_probs=73.0
Q ss_pred hhccCeEeeeccCCCCCCC---CCCCcCceeEEEecCcccCCC--cchHhhcCCCccEEeccCCCCccCCcc--hhcccc
Q 001999 496 EWKDTKKLSLFGFPSSTLP---DMPNCCEILTLIVEGRRLEKL--PMSFFEYMCHLQLLDLHDTSIRCLPPS--ISRLIN 568 (984)
Q Consensus 496 ~~~~~r~l~l~~~~~~~l~---~~~~~~~L~~L~l~~~~l~~l--~~~~~~~l~~Lr~L~L~~~~i~~lp~~--i~~l~~ 568 (984)
..+++|.+++.++.....+ -.+.|++++.|+|+.|-+... -..+...+++|+.|+|+.|.+...-++ -..+.|
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 4567888888877666544 246678888888886654432 123356677888888887766533221 125667
Q ss_pred cCeEecCCCcccc-cCchhhhccCCCcEEEecCcc-ccccchhhhccCCCCeeecc
Q 001999 569 LNALFLRSCSLLF-QLPKEIRYLQKLEILDVRHTR-IQCLPSEIGQLIKLKCLRVS 622 (984)
Q Consensus 569 L~~L~L~~c~~l~-~lp~~i~~L~~L~~L~l~~~~-l~~lp~~~~~L~~L~~L~l~ 622 (984)
|+.|.|++|..-. ++-.....+++|+.|++.+|. +..--....-+..|+.|+++
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs 254 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLS 254 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhcccc
Confidence 7777777764211 111223345667777776662 22222223345566666666
No 81
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.04 E-value=1.1e-05 Score=81.44 Aligned_cols=46 Identities=28% Similarity=0.506 Sum_probs=31.9
Q ss_pred CCCchHHHHHHHHHHhc---cCCccEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 155 KFPSHKEYVETLEKHLS---SGGLKKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 155 ~~vgr~~~~~~l~~~L~---~~~~~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
.|+||+++++++...+. ....+.+.|+|.+|+|||+|++...+++.
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~ 49 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLA 49 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 47999999999999993 35679999999999999999999666665
No 82
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.04 E-value=6.4e-05 Score=86.64 Aligned_cols=179 Identities=13% Similarity=0.158 Sum_probs=108.1
Q ss_pred CCCCCCchHHHHHHHHHHhccCCcc-EEEEEcCCCChHHHHHHHhhhhcccC------------------------CCCC
Q 001999 152 HASKFPSHKEYVETLEKHLSSGGLK-KICICGPLGVGKTTIMENSHDSVGES------------------------GRFD 206 (984)
Q Consensus 152 ~~~~~vgr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~~~~~~~~~------------------------~~F~ 206 (984)
.-.++||.+..++.|.+++..+++. .+.++|..|+||||+|+...+.+--. +.|.
T Consensus 14 tFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hp 93 (700)
T PRK12323 14 DFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFV 93 (700)
T ss_pred cHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCC
Confidence 3467899999999999999876654 56899999999999999844443200 0111
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHhccCccccchHHHHHHHHHHHcCCcEEEEEECCCCcc--chhhh--ccccCCCCcEE
Q 001999 207 IIFWVNVNTDGNISDIQEIILERLKVNAKELDNAQRADNISKELKDKRYVLFLDGVSSEI--NFKEI--GIHDDHGRGKV 282 (984)
Q Consensus 207 ~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~--~~~~~--~~~~~~~gs~i 282 (984)
-.+++..+....+.++. +|++.+. ..-..++.-++|+|++.... .+..+ .+..-..+.++
T Consensus 94 DviEIdAas~~gVDdIR-eLie~~~---------------~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~F 157 (700)
T PRK12323 94 DYIEMDAASNRGVDEMA-QLLDKAV---------------YAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKF 157 (700)
T ss_pred cceEecccccCCHHHHH-HHHHHHH---------------hchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceE
Confidence 12233222221221111 1111110 00124677799999998653 33333 12222234454
Q ss_pred -EEEcCCccccc---cCCceEEccCCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCCchHHHHH
Q 001999 283 -VFACRSREFCW---QADDVIHVERLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGMPYMLKLI 348 (984)
Q Consensus 283 -lvTTR~~~v~~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~~ 348 (984)
++||....+.. ..+..+.+..++.++..+.+.+.+.... ...-.+..+.|++.++|.|.-+..+
T Consensus 158 ILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Eg--i~~d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 158 ILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEG--IAHEVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred EEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 45555555544 5678999999999999999988765431 1112346688999999999655443
No 83
>PRK09087 hypothetical protein; Validated
Probab=98.03 E-value=6.8e-05 Score=77.44 Aligned_cols=137 Identities=9% Similarity=0.091 Sum_probs=84.2
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHHHHHhccCccccchHHHHHHHHHHHcCC
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEIILERLKVNAKELDNAQRADNISKELKDK 253 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~k 253 (984)
..+.+.|+|+.|+|||+|++......+ ..+++.. .+..+++.. +.+
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~~-------~~~i~~~------~~~~~~~~~--------------------~~~- 88 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKSD-------ALLIHPN------EIGSDAANA--------------------AAE- 88 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhcC-------CEEecHH------HcchHHHHh--------------------hhc-
Confidence 456799999999999999998655443 1233221 111111111 111
Q ss_pred cEEEEEECCCCcc----chhhhccccCCCCcEEEEEcCCcc---------ccc--cCCceEEccCCChHHHHHHHHHHhC
Q 001999 254 RYVLFLDGVSSEI----NFKEIGIHDDHGRGKVVFACRSRE---------FCW--QADDVIHVERLSPREAKKLFWEVVG 318 (984)
Q Consensus 254 r~LlVlDdv~~~~----~~~~~~~~~~~~gs~ilvTTR~~~---------v~~--~~~~~~~l~~L~~~~~~~Lf~~~~~ 318 (984)
-+|++||+.... .+-.+.-.....|..||+|++... ... .....++++++++++-..++++++.
T Consensus 89 -~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~ 167 (226)
T PRK09087 89 -GPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFA 167 (226)
T ss_pred -CeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHH
Confidence 278889996431 121211112344678999887421 111 5668999999999999999999886
Q ss_pred CCCCCCcchHHHHHHHHHHcCCCchHHHH
Q 001999 319 VNLKKNPDIEQEADSIVEECGGMPYMLKL 347 (984)
Q Consensus 319 ~~~~~~~~l~~~~~~I~~~c~GlPlai~~ 347 (984)
... ..--+++..-|++.+.|..-++..
T Consensus 168 ~~~--~~l~~ev~~~La~~~~r~~~~l~~ 194 (226)
T PRK09087 168 DRQ--LYVDPHVVYYLVSRMERSLFAAQT 194 (226)
T ss_pred HcC--CCCCHHHHHHHHHHhhhhHHHHHH
Confidence 531 112255778888888876655543
No 84
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.03 E-value=0.00019 Score=82.42 Aligned_cols=176 Identities=18% Similarity=0.147 Sum_probs=106.8
Q ss_pred CCCCCCchHHHHHHHHHHhccCCc-cEEEEEcCCCChHHHHHHHhhhhcccCCCC-----------------------Ce
Q 001999 152 HASKFPSHKEYVETLEKHLSSGGL-KKICICGPLGVGKTTIMENSHDSVGESGRF-----------------------DI 207 (984)
Q Consensus 152 ~~~~~vgr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F-----------------------~~ 207 (984)
.-.+++|.+..+..|...+..+++ ..+-++|+.|+||||+|+...+.+.-.... .-
T Consensus 19 ~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~D 98 (507)
T PRK06645 19 NFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPD 98 (507)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCc
Confidence 346789999999999887776553 578899999999999999965554210100 01
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhccCccccchHHHHHHHHHHHcCCcEEEEEECCCCcc--chhhh--ccccCCCCcEEE
Q 001999 208 IFWVNVNTDGNISDIQEIILERLKVNAKELDNAQRADNISKELKDKRYVLFLDGVSSEI--NFKEI--GIHDDHGRGKVV 283 (984)
Q Consensus 208 ~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~--~~~~~--~~~~~~~gs~il 283 (984)
++.+..+....+..+. ++++... ..-..+++-++|+|+++... .+..+ .+......+.+|
T Consensus 99 v~eidaas~~~vd~Ir-~iie~a~---------------~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI 162 (507)
T PRK06645 99 IIEIDAASKTSVDDIR-RIIESAE---------------YKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFI 162 (507)
T ss_pred EEEeeccCCCCHHHHH-HHHHHHH---------------hccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEE
Confidence 1112211111111111 1111110 01124677899999998742 34444 122333445555
Q ss_pred -EEcCCccccc---cCCceEEccCCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCCchHH
Q 001999 284 -FACRSREFCW---QADDVIHVERLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGMPYML 345 (984)
Q Consensus 284 -vTTR~~~v~~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~GlPlai 345 (984)
+||+...+.. .....+++.+++.++....+.+.+.... ..--.+....|++.++|.+--+
T Consensus 163 ~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~eg--i~ie~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 163 FATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQEN--LKTDIEALRIIAYKSEGSARDA 226 (507)
T ss_pred EEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHH
Confidence 4555555544 5567899999999999999998876542 1112456788999999987444
No 85
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.02 E-value=0.00019 Score=79.04 Aligned_cols=193 Identities=13% Similarity=0.108 Sum_probs=111.7
Q ss_pred ccCCCCCCchHHHHHHHHHHhccCCc-cEEEEEcCCCChHHHHHHHhhhhcccCC--CCCeEEEEEeCCCCCHHHHHHHH
Q 001999 150 SRHASKFPSHKEYVETLEKHLSSGGL-KKICICGPLGVGKTTIMENSHDSVGESG--RFDIIFWVNVNTDGNISDIQEII 226 (984)
Q Consensus 150 ~~~~~~~vgr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~~~~~~~~~~--~F~~~~wv~vs~~~~~~~i~~~i 226 (984)
|+....++|.++....+...+..++. ..+.|+|+.|+||||+|+...+.+-... .+... .....+......+.|
T Consensus 19 P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~i 95 (351)
T PRK09112 19 PSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQI 95 (351)
T ss_pred CCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHHH
Confidence 45567789999999999999987664 3588999999999999998555553100 01111 001111111122222
Q ss_pred HHH-------hccCccc-----cch--HHHHHHHHHHHc-----CCcEEEEEECCCCccc--hhhh--ccc-cCCCCcEE
Q 001999 227 LER-------LKVNAKE-----LDN--AQRADNISKELK-----DKRYVLFLDGVSSEIN--FKEI--GIH-DDHGRGKV 282 (984)
Q Consensus 227 ~~~-------l~~~~~~-----~~~--~~~~~~l~~~L~-----~kr~LlVlDdv~~~~~--~~~~--~~~-~~~~gs~i 282 (984)
... +....+. ... -+.+..+.+++. +++-++|+|++..... ...+ .+. .....--|
T Consensus 96 ~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fi 175 (351)
T PRK09112 96 AQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFI 175 (351)
T ss_pred HcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEE
Confidence 211 1000000 010 122334455443 5778999999986532 2222 111 22223345
Q ss_pred EEEcCCccccc---cCCceEEccCCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCCchHHHHHH
Q 001999 283 VFACRSREFCW---QADDVIHVERLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGMPYMLKLIG 349 (984)
Q Consensus 283 lvTTR~~~v~~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~~~ 349 (984)
++|++...+.. .....+++.+++.++..+.+.+.... .. --.+....|++.++|.|..+..+.
T Consensus 176 Lit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~-~~---~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 176 LISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSS-QG---SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred EEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcc-cC---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 55555444443 55679999999999999999884321 11 124457789999999997665443
No 86
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.00 E-value=8e-05 Score=83.71 Aligned_cols=188 Identities=14% Similarity=0.080 Sum_probs=107.0
Q ss_pred CCCCCCchHHHHHHHHHHhccCCcc-EEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 001999 152 HASKFPSHKEYVETLEKHLSSGGLK-KICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEIILERL 230 (984)
Q Consensus 152 ~~~~~vgr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l 230 (984)
.-.+++|.+..+..|..++..+++. .+.++|+.|+||||+|+...+.+.-....... .+....+-..+...+...+
T Consensus 16 ~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~---pCg~C~sC~~i~~g~~~dv 92 (484)
T PRK14956 16 FFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNE---PCNECTSCLEITKGISSDV 92 (484)
T ss_pred CHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCcc---ccCCCcHHHHHHccCCccc
Confidence 4467899999999999999887754 58999999999999999966655311100000 0000001111111110000
Q ss_pred c-cCccccch----HHHHHHHHH-HHcCCcEEEEEECCCCcc--chhhhc--cccCCCCcEEE-EEcCCccccc---cCC
Q 001999 231 K-VNAKELDN----AQRADNISK-ELKDKRYVLFLDGVSSEI--NFKEIG--IHDDHGRGKVV-FACRSREFCW---QAD 296 (984)
Q Consensus 231 ~-~~~~~~~~----~~~~~~l~~-~L~~kr~LlVlDdv~~~~--~~~~~~--~~~~~~gs~il-vTTR~~~v~~---~~~ 296 (984)
. .+...... .++...+.. ...++.-++|+|++.... .+..+. +..-.....+| .||....+.. ...
T Consensus 93 iEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRC 172 (484)
T PRK14956 93 LEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRC 172 (484)
T ss_pred eeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhh
Confidence 0 00000000 111222221 124667799999998643 344441 11222334444 4555555544 666
Q ss_pred ceEEccCCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCCchH
Q 001999 297 DVIHVERLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGMPYM 344 (984)
Q Consensus 297 ~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~GlPla 344 (984)
..|.+.+++.++..+.+.+.+.... ..--.+....|++.++|.+.-
T Consensus 173 q~~~f~~ls~~~i~~~L~~i~~~Eg--i~~e~eAL~~Ia~~S~Gd~Rd 218 (484)
T PRK14956 173 QDFIFKKVPLSVLQDYSEKLCKIEN--VQYDQEGLFWIAKKGDGSVRD 218 (484)
T ss_pred heeeecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCChHHH
Confidence 7899999999999988888765431 112245778899999998843
No 87
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.00 E-value=0.00025 Score=78.49 Aligned_cols=189 Identities=13% Similarity=0.115 Sum_probs=107.8
Q ss_pred ccCCCCCCchHHHHHHHHHHhccCCcc-EEEEEcCCCChHHHHHHHhhhhcccCC--CCC------eEEEEEeCCCCCHH
Q 001999 150 SRHASKFPSHKEYVETLEKHLSSGGLK-KICICGPLGVGKTTIMENSHDSVGESG--RFD------IIFWVNVNTDGNIS 220 (984)
Q Consensus 150 ~~~~~~~vgr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~~~~~~~~~~--~F~------~~~wv~vs~~~~~~ 220 (984)
|+...+++|.++....|.+.+..+++. .+-++|+.|+||+|+|....+.+--.. ..+ ...-+| ...
T Consensus 15 P~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~--~~c--- 89 (365)
T PRK07471 15 PRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAID--PDH--- 89 (365)
T ss_pred CCchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCC--CCC---
Confidence 445567899999999999999886654 588999999999999998444431001 000 000000 000
Q ss_pred HHHHHHHHHh-------ccC--ccc---cch--HHHHHHHHHHHc-----CCcEEEEEECCCCcc--chhhh--ccccCC
Q 001999 221 DIQEIILERL-------KVN--AKE---LDN--AQRADNISKELK-----DKRYVLFLDGVSSEI--NFKEI--GIHDDH 277 (984)
Q Consensus 221 ~i~~~i~~~l-------~~~--~~~---~~~--~~~~~~l~~~L~-----~kr~LlVlDdv~~~~--~~~~~--~~~~~~ 277 (984)
...+.|...- ... ... ... -+.+..+.+++. +++.++|+||+.... ....+ .+..-.
T Consensus 90 ~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp 169 (365)
T PRK07471 90 PVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPP 169 (365)
T ss_pred hHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCC
Confidence 0111111000 000 000 000 122334444443 567799999997643 22222 112223
Q ss_pred CCcEEEEEcCCc-cccc---cCCceEEccCCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCCchHHHHHH
Q 001999 278 GRGKVVFACRSR-EFCW---QADDVIHVERLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGMPYMLKLIG 349 (984)
Q Consensus 278 ~gs~ilvTTR~~-~v~~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~~~ 349 (984)
.++.+|++|.+. .+.. .....+.+.+++.++..+.+.+..... + .+....+++.++|.|..+..+.
T Consensus 170 ~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~----~--~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 170 ARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDL----P--DDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred CCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccC----C--HHHHHHHHHHcCCCHHHHHHHh
Confidence 455666666554 3332 667899999999999999998864321 1 1223678999999998665543
No 88
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.99 E-value=0.00018 Score=83.16 Aligned_cols=172 Identities=15% Similarity=0.169 Sum_probs=104.2
Q ss_pred CCCCCchHHHHHHHHHHhccCCc-cEEEEEcCCCChHHHHHHHhhhhccc-------------------CCCCCeEEEEE
Q 001999 153 ASKFPSHKEYVETLEKHLSSGGL-KKICICGPLGVGKTTIMENSHDSVGE-------------------SGRFDIIFWVN 212 (984)
Q Consensus 153 ~~~~vgr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~~~~~~~~-------------------~~~F~~~~wv~ 212 (984)
-.+++|.+..++.|...+..+++ ..+.++|+.|+||||+|+...+.+.- ...|...+++.
T Consensus 15 f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieid 94 (546)
T PRK14957 15 FAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEID 94 (546)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEee
Confidence 46789999999999999987654 45789999999999999995544320 01122233333
Q ss_pred eCCCCCHHHHHHHHHHHhccCccccchHHHHHHHHH-HHcCCcEEEEEECCCCcc--chhhh--ccccCCCCcEEE-EEc
Q 001999 213 VNTDGNISDIQEIILERLKVNAKELDNAQRADNISK-ELKDKRYVLFLDGVSSEI--NFKEI--GIHDDHGRGKVV-FAC 286 (984)
Q Consensus 213 vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~-~L~~kr~LlVlDdv~~~~--~~~~~--~~~~~~~gs~il-vTT 286 (984)
......+..+ ++|++ .+.. -..+++-++|+|++.... .+..+ .+......+.+| +||
T Consensus 95 aas~~gvd~i-r~ii~----------------~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Tt 157 (546)
T PRK14957 95 AASRTGVEET-KEILD----------------NIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATT 157 (546)
T ss_pred cccccCHHHH-HHHHH----------------HHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEEC
Confidence 2222222211 11211 1111 124677799999997643 23333 122223445555 455
Q ss_pred CCccccc---cCCceEEccCCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCCch
Q 001999 287 RSREFCW---QADDVIHVERLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGMPY 343 (984)
Q Consensus 287 R~~~v~~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~GlPl 343 (984)
....+.. .....+++.+++.++....+.+.+.... ..--++....|++.++|.+-
T Consensus 158 d~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~eg--i~~e~~Al~~Ia~~s~GdlR 215 (546)
T PRK14957 158 DYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKEN--INSDEQSLEYIAYHAKGSLR 215 (546)
T ss_pred ChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHH
Confidence 4444443 5578999999999998888887654431 12224567789999999774
No 89
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.97 E-value=0.00022 Score=81.73 Aligned_cols=182 Identities=17% Similarity=0.193 Sum_probs=105.3
Q ss_pred cCCCCCCchHHHHHHHHHHhccCCc-cEEEEEcCCCChHHHHHHHhhhhcccCCC-------------------CCeEEE
Q 001999 151 RHASKFPSHKEYVETLEKHLSSGGL-KKICICGPLGVGKTTIMENSHDSVGESGR-------------------FDIIFW 210 (984)
Q Consensus 151 ~~~~~~vgr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~~~~~~~~~~~-------------------F~~~~w 210 (984)
..-.+++|.+.....|...+..+.+ ..+-++|++|+||||+|+...+.+..... +...+.
T Consensus 11 ~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~e 90 (472)
T PRK14962 11 KTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIE 90 (472)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEE
Confidence 3446789999998888888887766 45789999999999999995544421000 111222
Q ss_pred EEeCCCCCHHHHHHHHHHHhccCccccchHHHHHHHHHHHcCCcEEEEEECCCCcc--chhhh--ccccCCCCcEEEEEc
Q 001999 211 VNVNTDGNISDIQEIILERLKVNAKELDNAQRADNISKELKDKRYVLFLDGVSSEI--NFKEI--GIHDDHGRGKVVFAC 286 (984)
Q Consensus 211 v~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~--~~~~~--~~~~~~~gs~ilvTT 286 (984)
+..+....+..+ ++|.+.... .-..+++-++|+|++.... ....+ .+........+|++|
T Consensus 91 l~aa~~~gid~i-R~i~~~~~~---------------~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilat 154 (472)
T PRK14962 91 LDAASNRGIDEI-RKIRDAVGY---------------RPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLAT 154 (472)
T ss_pred EeCcccCCHHHH-HHHHHHHhh---------------ChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEe
Confidence 333222222222 122221110 0123567799999997542 22222 111222234444444
Q ss_pred CC-ccccc---cCCceEEccCCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCC-chHHHHHHH
Q 001999 287 RS-REFCW---QADDVIHVERLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGM-PYMLKLIGK 350 (984)
Q Consensus 287 R~-~~v~~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~Gl-Plai~~~~~ 350 (984)
.+ ..+.. .....+++.+++.++....+.+.+.... ..--++....|++.++|. +.|+..+-.
T Consensus 155 tn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~eg--i~i~~eal~~Ia~~s~GdlR~aln~Le~ 221 (472)
T PRK14962 155 TNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEG--IEIDREALSFIAKRASGGLRDALTMLEQ 221 (472)
T ss_pred CChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 33 34433 5567899999999999999888775431 111245678888888654 566555544
No 90
>PLN03150 hypothetical protein; Provisional
Probab=97.97 E-value=1.5e-05 Score=95.53 Aligned_cols=78 Identities=27% Similarity=0.503 Sum_probs=67.8
Q ss_pred CccEEeccCCCCc-cCCcchhcccccCeEecCCCcccccCchhhhccCCCcEEEecCcccc-ccchhhhccCCCCeeecc
Q 001999 545 HLQLLDLHDTSIR-CLPPSISRLINLNALFLRSCSLLFQLPKEIRYLQKLEILDVRHTRIQ-CLPSEIGQLIKLKCLRVS 622 (984)
Q Consensus 545 ~Lr~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~~~l~-~lp~~~~~L~~L~~L~l~ 622 (984)
.++.|+|++|.+. .+|..++.+.+|++|+|++|.....+|..++.+++|++|++++|++. .+|..+++|++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4778899999887 57888999999999999997755688888999999999999999887 788889999999999998
No 91
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.96 E-value=0.00013 Score=85.13 Aligned_cols=178 Identities=16% Similarity=0.174 Sum_probs=106.0
Q ss_pred CCCCCCchHHHHHHHHHHhccCCc-cEEEEEcCCCChHHHHHHHhhhhcccC-------------------CCCCeEEEE
Q 001999 152 HASKFPSHKEYVETLEKHLSSGGL-KKICICGPLGVGKTTIMENSHDSVGES-------------------GRFDIIFWV 211 (984)
Q Consensus 152 ~~~~~vgr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~~~~~~~~~-------------------~~F~~~~wv 211 (984)
.-.+++|.+..+..|.+++..+++ ..+.++|+.|+||||+|+...+.+.-. +.|.-.+.+
T Consensus 14 tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEi 93 (709)
T PRK08691 14 TFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEI 93 (709)
T ss_pred CHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEE
Confidence 346789999999999999987664 467999999999999999854433200 011111223
Q ss_pred EeCCCCCHHHHHHHHHHHhccCccccchHHHHHHHHHHHcCCcEEEEEECCCCccc--hhhh--ccccCCCCcEEEEEcC
Q 001999 212 NVNTDGNISDIQEIILERLKVNAKELDNAQRADNISKELKDKRYVLFLDGVSSEIN--FKEI--GIHDDHGRGKVVFACR 287 (984)
Q Consensus 212 ~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~--~~~~--~~~~~~~gs~ilvTTR 287 (984)
..+....+.. ++++++... ..-..+++-++|+|++..... ...+ .+..-....++|++|.
T Consensus 94 daAs~~gVd~-IRelle~a~---------------~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTt 157 (709)
T PRK08691 94 DAASNTGIDN-IREVLENAQ---------------YAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATT 157 (709)
T ss_pred eccccCCHHH-HHHHHHHHH---------------hhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeC
Confidence 2222222211 111111110 001235677999999976432 2222 1112234456666664
Q ss_pred C-ccccc---cCCceEEccCCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCCchHHHH
Q 001999 288 S-REFCW---QADDVIHVERLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGMPYMLKL 347 (984)
Q Consensus 288 ~-~~v~~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~ 347 (984)
+ ..+.. +....+.+.+++.++....+.+.+.... ..--.+....|++.++|.+.-+..
T Consensus 158 d~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEg--i~id~eAL~~Ia~~A~GslRdAln 219 (709)
T PRK08691 158 DPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEK--IAYEPPALQLLGRAAAGSMRDALS 219 (709)
T ss_pred CccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcC--CCcCHHHHHHHHHHhCCCHHHHHH
Confidence 3 33332 5567789999999999999988776441 112245778999999998854443
No 92
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.96 E-value=0.00074 Score=68.90 Aligned_cols=170 Identities=15% Similarity=0.216 Sum_probs=104.4
Q ss_pred ccCCCCCCchHHHHHHHHHHhcc-----CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHH
Q 001999 150 SRHASKFPSHKEYVETLEKHLSS-----GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQE 224 (984)
Q Consensus 150 ~~~~~~~vgr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~ 224 (984)
|..-.+|+|.++.++++.=++.. ..+--+-++|++|.||||||.-...... ..+. ++-+....-.
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emg--vn~k----~tsGp~leK~---- 91 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELG--VNLK----ITSGPALEKP---- 91 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhc--CCeE----ecccccccCh----
Confidence 33456799999999888666643 5677899999999999999999666665 2221 1111111111
Q ss_pred HHHHHhccCccccchHHHHHHHHHHHcCCcEEEEEECCCCcc---------chhhhccc---cCCCCcEE----------
Q 001999 225 IILERLKVNAKELDNAQRADNISKELKDKRYVLFLDGVSSEI---------NFKEIGIH---DDHGRGKV---------- 282 (984)
Q Consensus 225 ~i~~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~---------~~~~~~~~---~~~~gs~i---------- 282 (984)
.+++..|-. |+ +.=++.+|.+.... ..+.+.+- ..++++|.
T Consensus 92 ---------------gDlaaiLt~-Le-~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTL 154 (332)
T COG2255 92 ---------------GDLAAILTN-LE-EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTL 154 (332)
T ss_pred ---------------hhHHHHHhc-CC-cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeE
Confidence 122222211 11 23356667765421 11222111 23344443
Q ss_pred -EEEcCCccccc----cCCceEEccCCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCCchHHHHH
Q 001999 283 -VFACRSREFCW----QADDVIHVERLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGMPYMLKLI 348 (984)
Q Consensus 283 -lvTTR~~~v~~----~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~~ 348 (984)
=.|||.-.+.+ ....+.+++..+.+|-.+...+.+..- ..+--++.+.+|+++..|-|--+.-+
T Consensus 155 IGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l--~i~i~~~~a~eIA~rSRGTPRIAnRL 223 (332)
T COG2255 155 IGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKIL--GIEIDEEAALEIARRSRGTPRIANRL 223 (332)
T ss_pred eeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHh--CCCCChHHHHHHHHhccCCcHHHHHH
Confidence 35999887766 667789999999999999999887432 11122457899999999999644433
No 93
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.94 E-value=0.0003 Score=78.64 Aligned_cols=171 Identities=9% Similarity=0.092 Sum_probs=101.2
Q ss_pred CCCCchHHHHHHHHHHhccCC----------ccEEEEEcCCCChHHHHHHHhhhhccc-------------------CCC
Q 001999 154 SKFPSHKEYVETLEKHLSSGG----------LKKICICGPLGVGKTTIMENSHDSVGE-------------------SGR 204 (984)
Q Consensus 154 ~~~vgr~~~~~~l~~~L~~~~----------~~vi~I~G~gGiGKTtLa~~~~~~~~~-------------------~~~ 204 (984)
++++|.+..++.|.+++..+. ...+-++|+.|+||||+|+.....+-- ..|
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 468999999999999997643 456889999999999999985443320 011
Q ss_pred CCeEEEEEe-CCCCCHHHHHHHHHHHhccCccccchHHHHHHHHHHHcCCcEEEEEECCCCcc--chhhh--ccccCCCC
Q 001999 205 FDIIFWVNV-NTDGNISDIQEIILERLKVNAKELDNAQRADNISKELKDKRYVLFLDGVSSEI--NFKEI--GIHDDHGR 279 (984)
Q Consensus 205 F~~~~wv~v-s~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~--~~~~~--~~~~~~~g 279 (984)
.| ..++.. +....+..+ +++.+.+... -..+++-++|+|++.... ....+ .+..-..+
T Consensus 85 pD-~~~i~~~~~~i~i~~i-R~l~~~~~~~---------------p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~ 147 (394)
T PRK07940 85 PD-VRVVAPEGLSIGVDEV-RELVTIAARR---------------PSTGRWRIVVIEDADRLTERAANALLKAVEEPPPR 147 (394)
T ss_pred CC-EEEeccccccCCHHHH-HHHHHHHHhC---------------cccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCC
Confidence 11 112211 111111111 1222211110 013566688899998653 22222 11222344
Q ss_pred cEEEEEcCC-ccccc---cCCceEEccCCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCCchHHHHH
Q 001999 280 GKVVFACRS-REFCW---QADDVIHVERLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGMPYMLKLI 348 (984)
Q Consensus 280 s~ilvTTR~-~~v~~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~~ 348 (984)
..+|++|.+ ..+.. .....+.+.+++.++..+.+.+..+. . .+.+..+++.++|.|..+..+
T Consensus 148 ~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~~----~---~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 148 TVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDGV----D---PETARRAARASQGHIGRARRL 213 (394)
T ss_pred CeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcCC----C---HHHHHHHHHHcCCCHHHHHHH
Confidence 555555554 44443 55689999999999999888754321 1 346788999999999755443
No 94
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.94 E-value=7.7e-06 Score=65.23 Aligned_cols=59 Identities=32% Similarity=0.503 Sum_probs=36.9
Q ss_pred CCccEEeccCCCCccCCc-chhcccccCeEecCCCcccccCch-hhhccCCCcEEEecCccc
Q 001999 544 CHLQLLDLHDTSIRCLPP-SISRLINLNALFLRSCSLLFQLPK-EIRYLQKLEILDVRHTRI 603 (984)
Q Consensus 544 ~~Lr~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~-~i~~L~~L~~L~l~~~~l 603 (984)
++|++|++++|.++.+|. .+..+++|++|++++|. ++.+|. .+.++++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCCcC
Confidence 356777777777776653 55667777777776643 455443 456666666666666643
No 95
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.94 E-value=0.0001 Score=82.73 Aligned_cols=165 Identities=16% Similarity=0.224 Sum_probs=98.6
Q ss_pred CCCCchHHHHHHHHHHhcc-------------CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHH
Q 001999 154 SKFPSHKEYVETLEKHLSS-------------GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNIS 220 (984)
Q Consensus 154 ~~~vgr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~ 220 (984)
.++.|+++.+++|.+.+.- ...+.+.++|++|+|||++|+....... ..| +.+.. .
T Consensus 122 ~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~--~~~-----~~v~~----~ 190 (364)
T TIGR01242 122 EDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN--ATF-----IRVVG----S 190 (364)
T ss_pred HHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCC--CCE-----Eecch----H
Confidence 4578999999999887642 1245689999999999999999877766 444 22211 1
Q ss_pred HHHHHHHHHhccCccccchHHHHHHHHHHH-cCCcEEEEEECCCCcc----------------chhhhc--cc--cCCCC
Q 001999 221 DIQEIILERLKVNAKELDNAQRADNISKEL-KDKRYVLFLDGVSSEI----------------NFKEIG--IH--DDHGR 279 (984)
Q Consensus 221 ~i~~~i~~~l~~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~~----------------~~~~~~--~~--~~~~g 279 (984)
.+.... ++ ........+.+.. ...+.+|++||++... .+..+. +. ....+
T Consensus 191 ~l~~~~---~g------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~ 261 (364)
T TIGR01242 191 ELVRKY---IG------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGN 261 (364)
T ss_pred HHHHHh---hh------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCC
Confidence 111110 00 0111222222222 3467899999986531 011111 11 12346
Q ss_pred cEEEEEcCCccccc-------cCCceEEccCCChHHHHHHHHHHhCCCC-CCCcchHHHHHHHHHHcCCCc
Q 001999 280 GKVVFACRSREFCW-------QADDVIHVERLSPREAKKLFWEVVGVNL-KKNPDIEQEADSIVEECGGMP 342 (984)
Q Consensus 280 s~ilvTTR~~~v~~-------~~~~~~~l~~L~~~~~~~Lf~~~~~~~~-~~~~~l~~~~~~I~~~c~GlP 342 (984)
.+||.||....... .....+.+...+.++..++|+.++.... ....+ ...+++.+.|..
T Consensus 262 v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 262 VKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVD----LEAIAKMTEGAS 328 (364)
T ss_pred EEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCC----HHHHHHHcCCCC
Confidence 67888887543322 2345789999999999999998875442 11122 356777777754
No 96
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.91 E-value=0.00029 Score=80.33 Aligned_cols=176 Identities=15% Similarity=0.177 Sum_probs=109.0
Q ss_pred CCCCCCchHHHHHHHHHHhccCCcc-EEEEEcCCCChHHHHHHHhhhhccc-------------------CCCCCeEEEE
Q 001999 152 HASKFPSHKEYVETLEKHLSSGGLK-KICICGPLGVGKTTIMENSHDSVGE-------------------SGRFDIIFWV 211 (984)
Q Consensus 152 ~~~~~vgr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~~~~~~~~-------------------~~~F~~~~wv 211 (984)
.-.+++|.+..++.|.+.+..+++. .+-++|+.|+||||+|+...+.+-- ...+.-++.+
T Consensus 11 ~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~ei 90 (491)
T PRK14964 11 SFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEI 90 (491)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEE
Confidence 3467899999999998888877665 7899999999999999885443210 0112223444
Q ss_pred EeCCCCCHHHHHHHHHHHhccCccccchHHHHHHHHHHHcCCcEEEEEECCCCcc--chhhh--ccccCCCCcEEEEEc-
Q 001999 212 NVNTDGNISDIQEIILERLKVNAKELDNAQRADNISKELKDKRYVLFLDGVSSEI--NFKEI--GIHDDHGRGKVVFAC- 286 (984)
Q Consensus 212 ~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~--~~~~~--~~~~~~~gs~ilvTT- 286 (984)
..+....+..+. +|++..... -..+++-++|+|++.... ....+ .+..-....++|++|
T Consensus 91 daas~~~vddIR-~Iie~~~~~---------------P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatt 154 (491)
T PRK14964 91 DAASNTSVDDIK-VILENSCYL---------------PISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATT 154 (491)
T ss_pred ecccCCCHHHHH-HHHHHHHhc---------------cccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeC
Confidence 444333333322 222222100 013567789999996543 23322 122223456666555
Q ss_pred CCccccc---cCCceEEccCCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCCchHH
Q 001999 287 RSREFCW---QADDVIHVERLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGMPYML 345 (984)
Q Consensus 287 R~~~v~~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~GlPlai 345 (984)
....+.. .....+++.+++.++....+.+.+.... ..--++....|++.++|.+-.+
T Consensus 155 e~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Eg--i~i~~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 155 EVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKEN--IEHDEESLKLIAENSSGSMRNA 214 (491)
T ss_pred ChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHH
Confidence 4445443 6678899999999999999988876542 1122456788999999987543
No 97
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.91 E-value=0.00018 Score=84.55 Aligned_cols=179 Identities=15% Similarity=0.204 Sum_probs=106.6
Q ss_pred cCCCCCCchHHHHHHHHHHhccCCcc-EEEEEcCCCChHHHHHHHhhhhcccCC-------------------CCCeEEE
Q 001999 151 RHASKFPSHKEYVETLEKHLSSGGLK-KICICGPLGVGKTTIMENSHDSVGESG-------------------RFDIIFW 210 (984)
Q Consensus 151 ~~~~~~vgr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~~~~~~~~~~-------------------~F~~~~w 210 (984)
+.-.++||.+..++.|.+.+..+++. .+-++|..|+||||+|+...+.+--.. .|.-.+.
T Consensus 13 ~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ie 92 (647)
T PRK07994 13 QTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLIE 92 (647)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCcee
Confidence 34467899999999999999876654 467999999999999998554442100 1111122
Q ss_pred EEeCCCCCHHHHHHHHHHHhccCccccchHHHHHHHH-HHHcCCcEEEEEECCCCcc--chhhh--ccccCCCCcEEEE-
Q 001999 211 VNVNTDGNISDIQEIILERLKVNAKELDNAQRADNIS-KELKDKRYVLFLDGVSSEI--NFKEI--GIHDDHGRGKVVF- 284 (984)
Q Consensus 211 v~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~-~~L~~kr~LlVlDdv~~~~--~~~~~--~~~~~~~gs~ilv- 284 (984)
+..+....+.. .++|+ ..+. .-..+++-++|+|++.... ....+ .+..-....++|+
T Consensus 93 idaas~~~Vdd-iR~li----------------~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~ 155 (647)
T PRK07994 93 IDAASRTKVED-TRELL----------------DNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLA 155 (647)
T ss_pred ecccccCCHHH-HHHHH----------------HHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEe
Confidence 21111111111 11111 1111 1134678899999998643 23332 1112223445554
Q ss_pred EcCCccccc---cCCceEEccCCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCCchHHHHH
Q 001999 285 ACRSREFCW---QADDVIHVERLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGMPYMLKLI 348 (984)
Q Consensus 285 TTR~~~v~~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~~ 348 (984)
||....+.. ..+..+.+.+++.++....+.+.+.... ...-.+....|++.++|.+--+..+
T Consensus 156 Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~--i~~e~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 156 TTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQ--IPFEPRALQLLARAADGSMRDALSL 220 (647)
T ss_pred cCCccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 454455543 4578999999999999999988764321 1122456788999999988644444
No 98
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.90 E-value=0.00026 Score=83.03 Aligned_cols=178 Identities=17% Similarity=0.204 Sum_probs=105.6
Q ss_pred CCCCCCchHHHHHHHHHHhccCCc-cEEEEEcCCCChHHHHHHHhhhhcccC------------------------CCCC
Q 001999 152 HASKFPSHKEYVETLEKHLSSGGL-KKICICGPLGVGKTTIMENSHDSVGES------------------------GRFD 206 (984)
Q Consensus 152 ~~~~~vgr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~~~~~~~~~------------------------~~F~ 206 (984)
.-++++|.+..+..|.+++..+++ ..+-++|+.|+||||+|+...+.+--. +.+.
T Consensus 14 ~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g~h~ 93 (618)
T PRK14951 14 SFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSGRFV 93 (618)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcCCCC
Confidence 346789999999999999988665 566899999999999999854433100 0111
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHhccCccccchHHHHHHHHHHHcCCcEEEEEECCCCcc--chhhh--ccccCCCCcEE
Q 001999 207 IIFWVNVNTDGNISDIQEIILERLKVNAKELDNAQRADNISKELKDKRYVLFLDGVSSEI--NFKEI--GIHDDHGRGKV 282 (984)
Q Consensus 207 ~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~--~~~~~--~~~~~~~gs~i 282 (984)
-.+++..+....+..+ +++++.+.. .-..++.-++|+|++.... .+..+ .+..-....++
T Consensus 94 D~~eldaas~~~Vd~i-Reli~~~~~---------------~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~f 157 (618)
T PRK14951 94 DYTELDAASNRGVDEV-QQLLEQAVY---------------KPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKF 157 (618)
T ss_pred ceeecCcccccCHHHH-HHHHHHHHh---------------CcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEE
Confidence 1222222211111111 111111100 0013456689999998753 33333 12222344566
Q ss_pred EEEc-CCccccc---cCCceEEccCCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCCchHHHH
Q 001999 283 VFAC-RSREFCW---QADDVIHVERLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGMPYMLKL 347 (984)
Q Consensus 283 lvTT-R~~~v~~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~ 347 (984)
|++| ....+.. .....+++++++.++....+.+.+.... ..--.+....|++.++|.+--+..
T Consensus 158 IL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~eg--i~ie~~AL~~La~~s~GslR~al~ 224 (618)
T PRK14951 158 VLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAEN--VPAEPQALRLLARAARGSMRDALS 224 (618)
T ss_pred EEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 5554 4444443 5678999999999999999988765431 111245678899999998754443
No 99
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.90 E-value=0.00019 Score=83.13 Aligned_cols=178 Identities=17% Similarity=0.182 Sum_probs=107.1
Q ss_pred CCCCCCchHHHHHHHHHHhccCCcc-EEEEEcCCCChHHHHHHHhhhhcccC-------------------CCCCeEEEE
Q 001999 152 HASKFPSHKEYVETLEKHLSSGGLK-KICICGPLGVGKTTIMENSHDSVGES-------------------GRFDIIFWV 211 (984)
Q Consensus 152 ~~~~~vgr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~~~~~~~~~-------------------~~F~~~~wv 211 (984)
.-.++||-+..+..|.+++..+++. .+-++|+.|+||||+|+...+.+--. +.|.-++.+
T Consensus 14 ~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~ei 93 (509)
T PRK14958 14 CFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEV 93 (509)
T ss_pred CHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEE
Confidence 3467899999999999999876655 46899999999999999854443200 122223334
Q ss_pred EeCCCCCHHHHHHHHHHHhccCccccchHHHHHHHHHHHcCCcEEEEEECCCCcc--chhhh--ccccCCCCcEEEEEc-
Q 001999 212 NVNTDGNISDIQEIILERLKVNAKELDNAQRADNISKELKDKRYVLFLDGVSSEI--NFKEI--GIHDDHGRGKVVFAC- 286 (984)
Q Consensus 212 ~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~--~~~~~--~~~~~~~gs~ilvTT- 286 (984)
..+....+..+ +++++.+... -..++.-++|+|++.... ....+ .+..-...+++|++|
T Consensus 94 daas~~~v~~i-R~l~~~~~~~---------------p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlatt 157 (509)
T PRK14958 94 DAASRTKVEDT-RELLDNIPYA---------------PTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATT 157 (509)
T ss_pred cccccCCHHHH-HHHHHHHhhc---------------cccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEEC
Confidence 33332333322 2222222110 113677799999998642 23322 122223456666554
Q ss_pred CCccccc---cCCceEEccCCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCCchHHHH
Q 001999 287 RSREFCW---QADDVIHVERLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGMPYMLKL 347 (984)
Q Consensus 287 R~~~v~~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~ 347 (984)
....+.. .....+++.+++.++....+.+.+.... ..--.+....|++.++|.+.-+..
T Consensus 158 d~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~eg--i~~~~~al~~ia~~s~GslR~al~ 219 (509)
T PRK14958 158 DHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEEN--VEFENAALDLLARAANGSVRDALS 219 (509)
T ss_pred ChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCcHHHHHH
Confidence 4344433 5567889999999988877777654431 111234667889999998854433
No 100
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.89 E-value=0.00023 Score=82.40 Aligned_cols=177 Identities=13% Similarity=0.143 Sum_probs=101.9
Q ss_pred cCCCCCCchHHHHHHHHHHhccCCc-cEEEEEcCCCChHHHHHHHhhhhcccCCCC-------------------CeEEE
Q 001999 151 RHASKFPSHKEYVETLEKHLSSGGL-KKICICGPLGVGKTTIMENSHDSVGESGRF-------------------DIIFW 210 (984)
Q Consensus 151 ~~~~~~vgr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F-------------------~~~~w 210 (984)
+.-.+++|++..++.+.+++..+++ ..+-++|+.|+||||+|+...+.+.-.... .-.++
T Consensus 13 ~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~Diie 92 (605)
T PRK05896 13 HNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDIVE 92 (605)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCceEE
Confidence 3446789999999999999977554 468899999999999999966554210100 01122
Q ss_pred EEeCCCCCHHHHHHHHHHHhccCccccchHHHHHHHHHHHcCCcEEEEEECCCCc--cchhhh--ccccCCCCcEEEE-E
Q 001999 211 VNVNTDGNISDIQEIILERLKVNAKELDNAQRADNISKELKDKRYVLFLDGVSSE--INFKEI--GIHDDHGRGKVVF-A 285 (984)
Q Consensus 211 v~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~~--~~~~~~~gs~ilv-T 285 (984)
+..+....+..+ +++.+.+.. .-..+++-++|+|++... ..+..+ .+..-.....+|+ |
T Consensus 93 Idaas~igVd~I-ReIi~~~~~---------------~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~T 156 (605)
T PRK05896 93 LDAASNNGVDEI-RNIIDNINY---------------LPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFAT 156 (605)
T ss_pred eccccccCHHHH-HHHHHHHHh---------------chhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEEC
Confidence 221111111111 111111100 001234557999998764 233333 1112223445544 4
Q ss_pred cCCccccc---cCCceEEccCCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCCchHH
Q 001999 286 CRSREFCW---QADDVIHVERLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGMPYML 345 (984)
Q Consensus 286 TR~~~v~~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~GlPlai 345 (984)
+....+.. .....+++.+++.++....+.+.+...... --.+.+..+++.++|.+--+
T Consensus 157 t~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~--Is~eal~~La~lS~GdlR~A 217 (605)
T PRK05896 157 TEFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIK--IEDNAIDKIADLADGSLRDG 217 (605)
T ss_pred CChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCcHHHH
Confidence 44444432 556789999999999998888876543111 11446788999999976433
No 101
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.88 E-value=6.3e-05 Score=82.03 Aligned_cols=92 Identities=14% Similarity=0.230 Sum_probs=65.0
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCC--CCHHHHHHHHHHHhccCccccc-h------HHHH
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTD--GNISDIQEIILERLKVNAKELD-N------AQRA 243 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~--~~~~~i~~~i~~~l~~~~~~~~-~------~~~~ 243 (984)
.....++|+|++|+|||||++...+.+.. ++|+..+||.+.+. .++.++++.|...+-...-+.+ . ....
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I~~-nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~ 244 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAITR-NHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVI 244 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhhcc-cCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHH
Confidence 56778999999999999999997666652 47999999999977 7899999999654422221111 1 1122
Q ss_pred HHHHHH-HcCCcEEEEEECCCCc
Q 001999 244 DNISKE-LKDKRYVLFLDGVSSE 265 (984)
Q Consensus 244 ~~l~~~-L~~kr~LlVlDdv~~~ 265 (984)
...+.. -+|++++|++|++...
T Consensus 245 e~Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 245 EKAKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHHHcCCCeEEEEEChhHH
Confidence 222222 2589999999999653
No 102
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.87 E-value=0.00057 Score=76.85 Aligned_cols=180 Identities=14% Similarity=0.189 Sum_probs=107.4
Q ss_pred cCCCCCCchHHHHHHHHHHhccCCc-cEEEEEcCCCChHHHHHHHhhhhccc--------------------CCCCCeEE
Q 001999 151 RHASKFPSHKEYVETLEKHLSSGGL-KKICICGPLGVGKTTIMENSHDSVGE--------------------SGRFDIIF 209 (984)
Q Consensus 151 ~~~~~~vgr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~~~~~~~~--------------------~~~F~~~~ 209 (984)
....+++|.+..++.+.+++..++. ..+-++|+.|+||||+|+...+.+.. ..+++. +
T Consensus 11 ~~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~-~ 89 (355)
T TIGR02397 11 QTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV-I 89 (355)
T ss_pred CcHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-E
Confidence 3446789999999999999987654 46789999999999999885444320 012332 3
Q ss_pred EEEeCCCCCHHHHHHHHHHHhccCccccchHHHHHHHHHHHcCCcEEEEEECCCCc--cchhhh--ccccCCCCcEEEEE
Q 001999 210 WVNVNTDGNISDIQEIILERLKVNAKELDNAQRADNISKELKDKRYVLFLDGVSSE--INFKEI--GIHDDHGRGKVVFA 285 (984)
Q Consensus 210 wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~~--~~~~~~~gs~ilvT 285 (984)
++..+....+.. .+++.+.+... -..+++-++|+|++... .....+ .+......+.+|++
T Consensus 90 ~~~~~~~~~~~~-~~~l~~~~~~~---------------p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~ 153 (355)
T TIGR02397 90 EIDAASNNGVDD-IREILDNVKYA---------------PSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILA 153 (355)
T ss_pred EeeccccCCHHH-HHHHHHHHhcC---------------cccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEE
Confidence 332221111111 12222222110 01245668999998654 223333 12223345666666
Q ss_pred cCCcc-ccc---cCCceEEccCCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCCchHHHHHH
Q 001999 286 CRSRE-FCW---QADDVIHVERLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGMPYMLKLIG 349 (984)
Q Consensus 286 TR~~~-v~~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~~~ 349 (984)
|.+.. +.. .....+++.+++.++....+...+...... --++.+..+++.++|.|..+....
T Consensus 154 ~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~--i~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 154 TTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIK--IEDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred eCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCChHHHHHHH
Confidence 64433 222 445688999999999988888876543111 114678889999999986665444
No 103
>PF14516 AAA_35: AAA-like domain
Probab=97.87 E-value=0.007 Score=66.69 Aligned_cols=195 Identities=14% Similarity=0.232 Sum_probs=118.0
Q ss_pred CCCCCCchHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCC-----CCHHHHHHHH
Q 001999 152 HASKFPSHKEYVETLEKHLSSGGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTD-----GNISDIQEII 226 (984)
Q Consensus 152 ~~~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~-----~~~~~i~~~i 226 (984)
+.+-+|.|...-+++.+.+.++ ...+.|.|+-.+|||+|.....+..+. ..+ ..+++++..- .+.....+.+
T Consensus 9 ~~~~Yi~R~~~e~~~~~~i~~~-G~~~~I~apRq~GKTSll~~l~~~l~~-~~~-~~v~id~~~~~~~~~~~~~~f~~~~ 85 (331)
T PF14516_consen 9 DSPFYIERPPAEQECYQEIVQP-GSYIRIKAPRQMGKTSLLLRLLERLQQ-QGY-RCVYIDLQQLGSAIFSDLEQFLRWF 85 (331)
T ss_pred CCCcccCchHHHHHHHHHHhcC-CCEEEEECcccCCHHHHHHHHHHHHHH-CCC-EEEEEEeecCCCcccCCHHHHHHHH
Confidence 4455789997777777777653 468999999999999999986555542 344 4557776542 2455445444
Q ss_pred ----HHHhccCccc---cc-----hHHHHHHHHHHH-c--CCcEEEEEECCCCccc---h-hhh--ccc--------cCC
Q 001999 227 ----LERLKVNAKE---LD-----NAQRADNISKEL-K--DKRYVLFLDGVSSEIN---F-KEI--GIH--------DDH 277 (984)
Q Consensus 227 ----~~~l~~~~~~---~~-----~~~~~~~l~~~L-~--~kr~LlVlDdv~~~~~---~-~~~--~~~--------~~~ 277 (984)
.++++....- +. .......+.+.+ + +++.+|++|+|..... + ..+ .+. ...
T Consensus 86 ~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~ 165 (331)
T PF14516_consen 86 CEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPI 165 (331)
T ss_pred HHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcc
Confidence 4444433210 10 023333344432 2 6899999999975321 1 111 001 001
Q ss_pred CCc-EEEE-E-cCCccccc------cCCceEEccCCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCCchHHHHH
Q 001999 278 GRG-KVVF-A-CRSREFCW------QADDVIHVERLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGMPYMLKLI 348 (984)
Q Consensus 278 ~gs-~ilv-T-TR~~~v~~------~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~~ 348 (984)
-.+ +.++ . |+...... .....++|++++.+|...|..++-.. .. ....++|...+||+|.-+..+
T Consensus 166 ~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~---~~---~~~~~~l~~~tgGhP~Lv~~~ 239 (331)
T PF14516_consen 166 WQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE---FS---QEQLEQLMDWTGGHPYLVQKA 239 (331)
T ss_pred cceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc---CC---HHHHHHHHHHHCCCHHHHHHH
Confidence 111 1222 1 21111111 44568999999999999999876322 11 223889999999999999999
Q ss_pred HHHhhcC
Q 001999 349 GKELVNQ 355 (984)
Q Consensus 349 ~~~l~~~ 355 (984)
+..+..+
T Consensus 240 ~~~l~~~ 246 (331)
T PF14516_consen 240 CYLLVEE 246 (331)
T ss_pred HHHHHHc
Confidence 9999775
No 104
>PRK05642 DNA replication initiation factor; Validated
Probab=97.84 E-value=0.00014 Score=75.80 Aligned_cols=145 Identities=12% Similarity=0.093 Sum_probs=87.7
Q ss_pred ccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHHHHHhccCccccchHHHHHHHHHHHcCCc
Q 001999 175 LKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEIILERLKVNAKELDNAQRADNISKELKDKR 254 (984)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~kr 254 (984)
...+.|+|..|+|||.|++...+.+. ..-..++|++..+ +... ...+.+.+++-.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~--~~~~~v~y~~~~~------~~~~-----------------~~~~~~~~~~~d 99 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFE--QRGEPAVYLPLAE------LLDR-----------------GPELLDNLEQYE 99 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH--hCCCcEEEeeHHH------HHhh-----------------hHHHHHhhhhCC
Confidence 36789999999999999999554443 2223466776432 1111 012223333323
Q ss_pred EEEEEECCCCc---cchhhhccc----cCCCCcEEEEEcCCccccc-----------cCCceEEccCCChHHHHHHHHHH
Q 001999 255 YVLFLDGVSSE---INFKEIGIH----DDHGRGKVVFACRSREFCW-----------QADDVIHVERLSPREAKKLFWEV 316 (984)
Q Consensus 255 ~LlVlDdv~~~---~~~~~~~~~----~~~~gs~ilvTTR~~~v~~-----------~~~~~~~l~~L~~~~~~~Lf~~~ 316 (984)
+||+||+... ..|+...+. -...|..||+|++...-.- .....+++++++.++-...++++
T Consensus 100 -~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~k 178 (234)
T PRK05642 100 -LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLR 178 (234)
T ss_pred -EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHH
Confidence 6789999643 355443222 2335678899887532211 34578999999999999999866
Q ss_pred hCCCCCCCcchHHHHHHHHHHcCCCchHHHH
Q 001999 317 VGVNLKKNPDIEQEADSIVEECGGMPYMLKL 347 (984)
Q Consensus 317 ~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~ 347 (984)
+.... ..--+++..-|++.+.|..-++..
T Consensus 179 a~~~~--~~l~~ev~~~L~~~~~~d~r~l~~ 207 (234)
T PRK05642 179 ASRRG--LHLTDEVGHFILTRGTRSMSALFD 207 (234)
T ss_pred HHHcC--CCCCHHHHHHHHHhcCCCHHHHHH
Confidence 54321 111146778888888776544433
No 105
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.83 E-value=0.00052 Score=69.19 Aligned_cols=155 Identities=16% Similarity=0.219 Sum_probs=90.1
Q ss_pred HHHHHhccCCc-cEEEEEcCCCChHHHHHHHhhhhcccC--------------------CCCCeEEEEEe-CCCCCHHHH
Q 001999 165 TLEKHLSSGGL-KKICICGPLGVGKTTIMENSHDSVGES--------------------GRFDIIFWVNV-NTDGNISDI 222 (984)
Q Consensus 165 ~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~~~~~~~~~--------------------~~F~~~~wv~v-s~~~~~~~i 222 (984)
.+.+.+..+++ ..+.++|+.|+||||+|+.....+-.. .+.|. .++.. +....++.
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~-~~~~~~~~~~~~~~- 80 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDL-HRLEPEGQSIKVDQ- 80 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcE-EEeccccCcCCHHH-
Confidence 45566666655 578999999999999999955554311 11122 22221 11122211
Q ss_pred HHHHHHHhccCccccchHHHHHHHHHHHcCCcEEEEEECCCCcc--chhhh--ccccCCCCcEEEEEcCCc-cccc---c
Q 001999 223 QEIILERLKVNAKELDNAQRADNISKELKDKRYVLFLDGVSSEI--NFKEI--GIHDDHGRGKVVFACRSR-EFCW---Q 294 (984)
Q Consensus 223 ~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~--~~~~~--~~~~~~~gs~ilvTTR~~-~v~~---~ 294 (984)
.+++.+.+.... ..+.+-++|+||+.... ..+.+ .+......+.+|++|++. .+.. .
T Consensus 81 i~~i~~~~~~~~---------------~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~s 145 (188)
T TIGR00678 81 VRELVEFLSRTP---------------QESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRS 145 (188)
T ss_pred HHHHHHHHccCc---------------ccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHh
Confidence 112222221100 12567789999987642 23333 122233455666666543 3322 4
Q ss_pred CCceEEccCCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCCchH
Q 001999 295 ADDVIHVERLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGMPYM 344 (984)
Q Consensus 295 ~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~GlPla 344 (984)
....+.+.+++.++..+.+.+. + . . ++.+..|++.++|.|..
T Consensus 146 r~~~~~~~~~~~~~~~~~l~~~-g--i--~---~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 146 RCQVLPFPPLSEEALLQWLIRQ-G--I--S---EEAAELLLALAGGSPGA 187 (188)
T ss_pred hcEEeeCCCCCHHHHHHHHHHc-C--C--C---HHHHHHHHHHcCCCccc
Confidence 5579999999999998888776 2 1 1 45788999999998853
No 106
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.81 E-value=0.00072 Score=76.18 Aligned_cols=176 Identities=13% Similarity=0.223 Sum_probs=102.8
Q ss_pred CCCCCCchHHHHHHHHHHhccCCc-cEEEEEcCCCChHHHHHHHhhhhccc------CCCCCeEE-EEEeCCCCCHHHHH
Q 001999 152 HASKFPSHKEYVETLEKHLSSGGL-KKICICGPLGVGKTTIMENSHDSVGE------SGRFDIIF-WVNVNTDGNISDIQ 223 (984)
Q Consensus 152 ~~~~~vgr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~~~~~~~~------~~~F~~~~-wv~vs~~~~~~~i~ 223 (984)
.-.+++|.+..++.+.+++..+.. +.+-++|+.|+||||+|+...+.+.. ...|...+ -+......++.. .
T Consensus 15 ~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-i 93 (367)
T PRK14970 15 TFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDD-I 93 (367)
T ss_pred cHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHH-H
Confidence 346789999999999999987655 48889999999999999996555431 01222111 111111111111 1
Q ss_pred HHHHHHhccCccccchHHHHHHHHHHHcCCcEEEEEECCCCcc--chhhh--ccccCCCCcEEEEEc-CCccccc---cC
Q 001999 224 EIILERLKVNAKELDNAQRADNISKELKDKRYVLFLDGVSSEI--NFKEI--GIHDDHGRGKVVFAC-RSREFCW---QA 295 (984)
Q Consensus 224 ~~i~~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~--~~~~~--~~~~~~~gs~ilvTT-R~~~v~~---~~ 295 (984)
.++++++... -..+++-++|+|++.... .+..+ .+......+.+|++| ....+.. ..
T Consensus 94 ~~l~~~~~~~---------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr 158 (367)
T PRK14970 94 RNLIDQVRIP---------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSR 158 (367)
T ss_pred HHHHHHHhhc---------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhc
Confidence 1222221100 012456689999986542 23333 122222334555444 4333332 44
Q ss_pred CceEEccCCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCCchHH
Q 001999 296 DDVIHVERLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGMPYML 345 (984)
Q Consensus 296 ~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~GlPlai 345 (984)
...+++.+++.++....+.+.+..... .--.+..+.|++.++|.+-.+
T Consensus 159 ~~~v~~~~~~~~~l~~~l~~~~~~~g~--~i~~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 159 CQIFDFKRITIKDIKEHLAGIAVKEGI--KFEDDALHIIAQKADGALRDA 206 (367)
T ss_pred ceeEecCCccHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhCCCCHHHH
Confidence 568999999999999888887654311 112457888899999876543
No 107
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.81 E-value=0.00035 Score=81.50 Aligned_cols=176 Identities=15% Similarity=0.181 Sum_probs=104.8
Q ss_pred CCCCCCchHHHHHHHHHHhccCCcc-EEEEEcCCCChHHHHHHHhhhhcccC-------------------CCCCeEEEE
Q 001999 152 HASKFPSHKEYVETLEKHLSSGGLK-KICICGPLGVGKTTIMENSHDSVGES-------------------GRFDIIFWV 211 (984)
Q Consensus 152 ~~~~~vgr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~~~~~~~~~-------------------~~F~~~~wv 211 (984)
.-.+++|.+..++.+.+++..++.. .+-++|+.|+||||+|+...+.+--. +.|.-.+++
T Consensus 14 ~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei 93 (527)
T PRK14969 14 SFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEV 93 (527)
T ss_pred cHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEe
Confidence 3467899999999999999876654 56899999999999999955544200 112222333
Q ss_pred EeCCCCCHHHHHHHHHHHhccCccccchHHHHHHHHHHHcCCcEEEEEECCCCccc--hhhh--ccccCCCCcEEEEEc-
Q 001999 212 NVNTDGNISDIQEIILERLKVNAKELDNAQRADNISKELKDKRYVLFLDGVSSEIN--FKEI--GIHDDHGRGKVVFAC- 286 (984)
Q Consensus 212 ~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~--~~~~--~~~~~~~gs~ilvTT- 286 (984)
..+....+.. .+++++.+... -..+++-++|+|++..... ...+ .+..-...+.+|++|
T Consensus 94 ~~~~~~~vd~-ir~l~~~~~~~---------------p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~ 157 (527)
T PRK14969 94 DAASNTQVDA-MRELLDNAQYA---------------PTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATT 157 (527)
T ss_pred eccccCCHHH-HHHHHHHHhhC---------------cccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeC
Confidence 3222222221 11222221100 0135677999999976532 2222 122222345555554
Q ss_pred CCccccc---cCCceEEccCCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCCchHH
Q 001999 287 RSREFCW---QADDVIHVERLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGMPYML 345 (984)
Q Consensus 287 R~~~v~~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~GlPlai 345 (984)
..+.+.. .....+++.+++.++....+.+.+.... ...-++....|++.++|.+--+
T Consensus 158 d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~eg--i~~~~~al~~la~~s~Gslr~a 217 (527)
T PRK14969 158 DPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQEN--IPFDATALQLLARAAAGSMRDA 217 (527)
T ss_pred ChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHH
Confidence 4344332 4467899999999999988887764331 1122456688999999988543
No 108
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.79 E-value=0.00034 Score=79.17 Aligned_cols=196 Identities=13% Similarity=0.113 Sum_probs=106.9
Q ss_pred ccCCCCCCchHHHHHHHHHHhccCCcc-EEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEE-eCCCCCHHHHHHHHH
Q 001999 150 SRHASKFPSHKEYVETLEKHLSSGGLK-KICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVN-VNTDGNISDIQEIIL 227 (984)
Q Consensus 150 ~~~~~~~vgr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~-vs~~~~~~~i~~~i~ 227 (984)
|....+++|.+..++.|..++..++++ .+-++|+.|+||||+|+...+.+.-....+...|.. +...+..-...+.+.
T Consensus 12 P~~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~ 91 (397)
T PRK14955 12 PKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFD 91 (397)
T ss_pred CCcHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHh
Confidence 334567899999999999999887665 488999999999999998555542101111000110 000000000111111
Q ss_pred HHhccC-----ccccchHHHHHHHHHHH-----cCCcEEEEEECCCCcc--chhhh--ccccCCCCcEEEEEc-CCcccc
Q 001999 228 ERLKVN-----AKELDNAQRADNISKEL-----KDKRYVLFLDGVSSEI--NFKEI--GIHDDHGRGKVVFAC-RSREFC 292 (984)
Q Consensus 228 ~~l~~~-----~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~~--~~~~~--~~~~~~~gs~ilvTT-R~~~v~ 292 (984)
.....+ ......-+.+..+.+.+ .+++-++|+|++.... .+..+ .+..-...+.+|++| +...+.
T Consensus 92 ~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~ 171 (397)
T PRK14955 92 AGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIP 171 (397)
T ss_pred cCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhH
Confidence 000000 00000011111222222 3566789999987643 34443 222333455655544 444443
Q ss_pred c---cCCceEEccCCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCCchHHHH
Q 001999 293 W---QADDVIHVERLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGMPYMLKL 347 (984)
Q Consensus 293 ~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~ 347 (984)
. .....+++.++++++....+.+.+.... ..--.+.+..|++.++|.+--+..
T Consensus 172 ~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g--~~i~~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 172 ATIASRCQRFNFKRIPLEEIQQQLQGICEAEG--ISVDADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 3 3456899999999999888887764321 112245788999999998854433
No 109
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.77 E-value=5.6e-05 Score=82.88 Aligned_cols=32 Identities=28% Similarity=0.310 Sum_probs=17.4
Q ss_pred CcccEeeccCCccccccCCCCccCCCCcceEeeccc
Q 001999 901 PKLKTLELIDLPKLSTICNSLLLPWPSLETIKIKAC 936 (984)
Q Consensus 901 ~~L~~L~L~~c~~L~~i~~~~~~~l~sL~~L~i~~C 936 (984)
++|++|.+++|..+. ++. .-.++|+.|+++.+
T Consensus 156 sSLk~L~Is~c~~i~-LP~---~LP~SLk~L~ls~n 187 (426)
T PRK15386 156 PSLKTLSLTGCSNII-LPE---KLPESLQSITLHIE 187 (426)
T ss_pred CcccEEEecCCCccc-Ccc---cccccCcEEEeccc
Confidence 367777777766443 222 01146777776654
No 110
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.77 E-value=0.00037 Score=72.73 Aligned_cols=167 Identities=10% Similarity=0.027 Sum_probs=93.3
Q ss_pred CCCC-chHH-HHHHHHHHhcc-CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 001999 154 SKFP-SHKE-YVETLEKHLSS-GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEIILERL 230 (984)
Q Consensus 154 ~~~v-gr~~-~~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l 230 (984)
++|+ |.+. ....+.++... .....+.|+|..|+|||+||+...+.... ... ..++++..... ..+
T Consensus 18 d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~-~~~-~~~~i~~~~~~------~~~---- 85 (227)
T PRK08903 18 DNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASY-GGR-NARYLDAASPL------LAF---- 85 (227)
T ss_pred cccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHh-CCC-cEEEEehHHhH------HHH----
Confidence 3444 4433 34444444442 34568899999999999999995544420 222 34455433311 000
Q ss_pred ccCccccchHHHHHHHHHHHcCCcEEEEEECCCCccchh--hh--ccc-cCCCCc-EEEEEcCCccccc----------c
Q 001999 231 KVNAKELDNAQRADNISKELKDKRYVLFLDGVSSEINFK--EI--GIH-DDHGRG-KVVFACRSREFCW----------Q 294 (984)
Q Consensus 231 ~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~--~~--~~~-~~~~gs-~ilvTTR~~~v~~----------~ 294 (984)
... ...-+||+||+.....+. .+ .+. ....+. .||+|++...... .
T Consensus 86 -----------------~~~-~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~ 147 (227)
T PRK08903 86 -----------------DFD-PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLG 147 (227)
T ss_pred -----------------hhc-ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHh
Confidence 111 234478999997543222 11 111 112333 4667766432111 2
Q ss_pred CCceEEccCCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCCchHHHHHHHHh
Q 001999 295 ADDVIHVERLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGMPYMLKLIGKEL 352 (984)
Q Consensus 295 ~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~~~~~l 352 (984)
....+++.++++++-..++.+.+... ...--++..+.+++.+.|.+..+..+...+
T Consensus 148 ~~~~i~l~pl~~~~~~~~l~~~~~~~--~v~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 148 WGLVYELKPLSDADKIAALKAAAAER--GLQLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred cCeEEEecCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 24789999999988777776654322 111224577888888888888776666554
No 111
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.74 E-value=0.0005 Score=77.51 Aligned_cols=164 Identities=15% Similarity=0.224 Sum_probs=96.2
Q ss_pred CCCCchHHHHHHHHHHhcc-------------CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHH
Q 001999 154 SKFPSHKEYVETLEKHLSS-------------GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNIS 220 (984)
Q Consensus 154 ~~~vgr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~ 220 (984)
.++.|+++.++++.+.+.. ...+.|.++|++|+|||++|+....... ..| +.++. .
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~--~~~-----i~v~~----~ 199 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN--ATF-----IRVVG----S 199 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhC--CCE-----EEeeh----H
Confidence 4578999999998887632 2356789999999999999999777765 333 22221 1
Q ss_pred HHHHHHHHHhccCccccchHHHHHHHHHHH-cCCcEEEEEECCCCcc------------chh-hh--cc---c--cCCCC
Q 001999 221 DIQEIILERLKVNAKELDNAQRADNISKEL-KDKRYVLFLDGVSSEI------------NFK-EI--GI---H--DDHGR 279 (984)
Q Consensus 221 ~i~~~i~~~l~~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~~------------~~~-~~--~~---~--~~~~g 279 (984)
.+.... .+ ........+.+.. ...+.+|++||+.... ... .+ .+ . ....+
T Consensus 200 ~l~~~~---~g------~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~ 270 (389)
T PRK03992 200 ELVQKF---IG------EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGN 270 (389)
T ss_pred HHhHhh---cc------chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCC
Confidence 111110 00 0112222233332 3467899999996521 111 11 11 1 12235
Q ss_pred cEEEEEcCCccccc-------cCCceEEccCCChHHHHHHHHHHhCCCC-CCCcchHHHHHHHHHHcCCC
Q 001999 280 GKVVFACRSREFCW-------QADDVIHVERLSPREAKKLFWEVVGVNL-KKNPDIEQEADSIVEECGGM 341 (984)
Q Consensus 280 s~ilvTTR~~~v~~-------~~~~~~~l~~L~~~~~~~Lf~~~~~~~~-~~~~~l~~~~~~I~~~c~Gl 341 (984)
..||.||....... .....+.+++.+.++-.++|+.++.... ....+ ...+++.+.|.
T Consensus 271 v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~----~~~la~~t~g~ 336 (389)
T PRK03992 271 VKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVD----LEELAELTEGA 336 (389)
T ss_pred EEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCC----HHHHHHHcCCC
Confidence 67777776544322 2345799999999999999998875431 12223 34566666664
No 112
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.72 E-value=0.0012 Score=75.56 Aligned_cols=163 Identities=13% Similarity=0.127 Sum_probs=100.5
Q ss_pred ccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHHHHHhccCccccchHHHHHHHHHHHcCCc
Q 001999 175 LKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEIILERLKVNAKELDNAQRADNISKELKDKR 254 (984)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~kr 254 (984)
...+.|+|..|+|||+|++...+.+.....-..+++++ ..++...+..+++... .....+.+.++ +.
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~~------~~~~~~~~~~~-~~ 207 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS------GDEFARKAVDILQKTH------KEIEQFKNEIC-QN 207 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE------HHHHHHHHHHHHHHhh------hHHHHHHHHhc-cC
Confidence 46789999999999999999655443111112344443 3456677766654211 12233444444 34
Q ss_pred EEEEEECCCCcc---chhhhccc----cCCCCcEEEEEcCCcc--c-------cc--cCCceEEccCCChHHHHHHHHHH
Q 001999 255 YVLFLDGVSSEI---NFKEIGIH----DDHGRGKVVFACRSRE--F-------CW--QADDVIHVERLSPREAKKLFWEV 316 (984)
Q Consensus 255 ~LlVlDdv~~~~---~~~~~~~~----~~~~gs~ilvTTR~~~--v-------~~--~~~~~~~l~~L~~~~~~~Lf~~~ 316 (984)
-+||+||+.... .+.+..+. ....|..||+|+.... . .. ...-...+++++.++-..+++++
T Consensus 208 dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~ 287 (450)
T PRK14087 208 DVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKE 287 (450)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHH
Confidence 588899996532 22222111 2234557888866431 1 11 55678889999999999999998
Q ss_pred hCCCCCCCcchHHHHHHHHHHcCCCchHHHHHHH
Q 001999 317 VGVNLKKNPDIEQEADSIVEECGGMPYMLKLIGK 350 (984)
Q Consensus 317 ~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~~~~ 350 (984)
+....-...--+++..-|++.++|.|-.+..+..
T Consensus 288 ~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~ 321 (450)
T PRK14087 288 IKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVS 321 (450)
T ss_pred HHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHH
Confidence 7643111122367889999999999977755543
No 113
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.72 E-value=0.00049 Score=84.84 Aligned_cols=175 Identities=13% Similarity=0.126 Sum_probs=99.4
Q ss_pred CCCCCchHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHhhhhcccCC----CCCeEEE-EEeCCCCCHHHHHHHHH
Q 001999 153 ASKFPSHKEYVETLEKHLSSGGLKKICICGPLGVGKTTIMENSHDSVGESG----RFDIIFW-VNVNTDGNISDIQEIIL 227 (984)
Q Consensus 153 ~~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~----~F~~~~w-v~vs~~~~~~~i~~~i~ 227 (984)
...++||++++.++++.|......-+.++|.+|+||||+|+...+++.... -.+..+| +.++. +.
T Consensus 186 ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~------l~---- 255 (852)
T TIGR03345 186 IDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGL------LQ---- 255 (852)
T ss_pred CCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhh------hh----
Confidence 367899999999999999876666677999999999999999666653111 1123333 22221 00
Q ss_pred HHhccCccccchHHHHHHHHHHH--cCCcEEEEEECCCCc---------cchhhhccccCCCC-cEEEEEcCCccc----
Q 001999 228 ERLKVNAKELDNAQRADNISKEL--KDKRYVLFLDGVSSE---------INFKEIGIHDDHGR-GKVVFACRSREF---- 291 (984)
Q Consensus 228 ~~l~~~~~~~~~~~~~~~l~~~L--~~kr~LlVlDdv~~~---------~~~~~~~~~~~~~g-s~ilvTTR~~~v---- 291 (984)
........-+.....+.+.+ .+++.+|++|++... .+...+..|.-.+| -++|-||.....
T Consensus 256 ---ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G~l~~IgaTT~~e~~~~~ 332 (852)
T TIGR03345 256 ---AGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARGELRTIAATTWAEYKKYF 332 (852)
T ss_pred ---cccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCCCeEEEEecCHHHHhhhh
Confidence 00000000012222222222 257899999998543 12223444533334 456655554322
Q ss_pred ----cc-cCCceEEccCCChHHHHHHHHHHhCCCC--CCCcchHHHHHHHHHHcCC
Q 001999 292 ----CW-QADDVIHVERLSPREAKKLFWEVVGVNL--KKNPDIEQEADSIVEECGG 340 (984)
Q Consensus 292 ----~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~--~~~~~l~~~~~~I~~~c~G 340 (984)
|- .....+.+++++.++..++++....... ....--.+....+++.+.+
T Consensus 333 ~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~r 388 (852)
T TIGR03345 333 EKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHR 388 (852)
T ss_pred hccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccc
Confidence 11 4557899999999999999755442211 0111124455666666654
No 114
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.71 E-value=3e-06 Score=95.58 Aligned_cols=158 Identities=22% Similarity=0.204 Sum_probs=110.7
Q ss_pred hhhhccCeEeeeccCCCCCCC---------------------------------CCCCcCceeEEEecCcccCCCcchHh
Q 001999 494 EEEWKDTKKLSLFGFPSSTLP---------------------------------DMPNCCEILTLIVEGRRLEKLPMSFF 540 (984)
Q Consensus 494 ~~~~~~~r~l~l~~~~~~~l~---------------------------------~~~~~~~L~~L~l~~~~l~~l~~~~~ 540 (984)
...++.+|+|-+.++++.... ..+.+..|.+.++++|.+..+..+ +
T Consensus 105 ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD~S-L 183 (1096)
T KOG1859|consen 105 IFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMDES-L 183 (1096)
T ss_pred eccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhHHHH-H
Confidence 445677888888877665321 113345566666777777766665 7
Q ss_pred hcCCCccEEeccCCCCccCCcchhcccccCeEecCCCcccccCchh-hhccCCCcEEEecCccccccchhhhccCCCCee
Q 001999 541 EYMCHLQLLDLHDTSIRCLPPSISRLINLNALFLRSCSLLFQLPKE-IRYLQKLEILDVRHTRIQCLPSEIGQLIKLKCL 619 (984)
Q Consensus 541 ~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~-i~~L~~L~~L~l~~~~l~~lp~~~~~L~~L~~L 619 (984)
.-++.|+.|||++|+++... .+..|.+|++|+|+.| .++.+|.- ...+. |+.|.+++|.++.+ .++.+|.+|++|
T Consensus 184 qll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~-L~~L~lrnN~l~tL-~gie~LksL~~L 259 (1096)
T KOG1859|consen 184 QLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYN-CLRHVPQLSMVGCK-LQLLNLRNNALTTL-RGIENLKSLYGL 259 (1096)
T ss_pred HHHHHhhhhccchhhhhhhH-HHHhcccccccccccc-hhccccccchhhhh-heeeeecccHHHhh-hhHHhhhhhhcc
Confidence 77889999999999998775 6888999999999995 57888753 33333 99999999998887 578899999999
Q ss_pred ecccccccCccccCCCCCCcccchhhhhccccccceeeeecCCchhHH
Q 001999 620 RVSWVENVGNHTHAGAWPGEMISSNIISKLCLLEELIIEVLDPSDRRW 667 (984)
Q Consensus 620 ~l~~~~~~~~~~l~~~~~~~~ip~~~l~~L~~L~~L~l~~~~~~~~~~ 667 (984)
+++ .|-... .-....++.|..|..|++.+...-...|
T Consensus 260 Dls-----yNll~~------hseL~pLwsLs~L~~L~LeGNPl~c~p~ 296 (1096)
T KOG1859|consen 260 DLS-----YNLLSE------HSELEPLWSLSSLIVLWLEGNPLCCAPW 296 (1096)
T ss_pred chh-----Hhhhhc------chhhhHHHHHHHHHHHhhcCCccccCHH
Confidence 998 332211 0011236777888888887654444444
No 115
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.71 E-value=0.0021 Score=74.94 Aligned_cols=183 Identities=16% Similarity=0.163 Sum_probs=107.4
Q ss_pred CCCCCCchHHHHHHHHHHhccCC-ccEEEEEcCCCChHHHHHHHhhhhcccCCCC-------------------CeEEEE
Q 001999 152 HASKFPSHKEYVETLEKHLSSGG-LKKICICGPLGVGKTTIMENSHDSVGESGRF-------------------DIIFWV 211 (984)
Q Consensus 152 ~~~~~vgr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F-------------------~~~~wv 211 (984)
.-.+++|.+..++.|.+++..++ ...+-++|+.|+||||+|+...+.+--.... .-++++
T Consensus 14 sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~eI 93 (624)
T PRK14959 14 TFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVVEI 93 (624)
T ss_pred CHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceEEE
Confidence 34678999999999988888765 4677889999999999999955554210000 002222
Q ss_pred EeCCCCCHHHHHHHHHHHhccCccccchHHHHHHHHHHHcCCcEEEEEECCCCcc--chhhh--ccccCCCCcEEEEEcC
Q 001999 212 NVNTDGNISDIQEIILERLKVNAKELDNAQRADNISKELKDKRYVLFLDGVSSEI--NFKEI--GIHDDHGRGKVVFACR 287 (984)
Q Consensus 212 ~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~--~~~~~--~~~~~~~gs~ilvTTR 287 (984)
..+....+..+ +.|.+.+.. .-..+++-++|+|++.... ....+ .+..-.....+|++|.
T Consensus 94 d~a~~~~Id~i-R~L~~~~~~---------------~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt 157 (624)
T PRK14959 94 DGASNRGIDDA-KRLKEAIGY---------------APMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATT 157 (624)
T ss_pred ecccccCHHHH-HHHHHHHHh---------------hhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecC
Confidence 21111111111 111111100 0124667799999997642 23333 1212223455555544
Q ss_pred C-ccccc---cCCceEEccCCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCCc-hHHHHHHHHh
Q 001999 288 S-REFCW---QADDVIHVERLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGMP-YMLKLIGKEL 352 (984)
Q Consensus 288 ~-~~v~~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~GlP-lai~~~~~~l 352 (984)
. ..+.. .....+++.+++.++....+.+.+.... ..--.+.++.|++.++|.+ .|+..+..++
T Consensus 158 ~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~eg--i~id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 158 EPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREG--VDYDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred ChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3 44433 4456889999999999988888765431 1112457888999999966 6666665544
No 116
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.70 E-value=0.00046 Score=71.05 Aligned_cols=151 Identities=9% Similarity=0.127 Sum_probs=86.9
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHHHHHhccCccccchHHHHHHHHHHHcCC
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEIILERLKVNAKELDNAQRADNISKELKDK 253 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~k 253 (984)
....+.|+|..|+|||.|.++..+.+.....=..+++++ ..+....+...+... ....+++.++ .
T Consensus 33 ~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~------~~~f~~~~~~~~~~~--------~~~~~~~~~~-~ 97 (219)
T PF00308_consen 33 RYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS------AEEFIREFADALRDG--------EIEEFKDRLR-S 97 (219)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE------HHHHHHHHHHHHHTT--------SHHHHHHHHC-T
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec------HHHHHHHHHHHHHcc--------cchhhhhhhh-c
Confidence 356789999999999999999665554111112455663 445555665555431 1223444455 3
Q ss_pred cEEEEEECCCCc---cchhhhccc----cCCCCcEEEEEcCCccc--c-------c--cCCceEEccCCChHHHHHHHHH
Q 001999 254 RYVLFLDGVSSE---INFKEIGIH----DDHGRGKVVFACRSREF--C-------W--QADDVIHVERLSPREAKKLFWE 315 (984)
Q Consensus 254 r~LlVlDdv~~~---~~~~~~~~~----~~~~gs~ilvTTR~~~v--~-------~--~~~~~~~l~~L~~~~~~~Lf~~ 315 (984)
-=+|++||+... ..|.+..+. -...|.+||+|++..-- . + ...-.+++.+.++++-..++.+
T Consensus 98 ~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~ 177 (219)
T PF00308_consen 98 ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQK 177 (219)
T ss_dssp SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHH
T ss_pred CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHH
Confidence 457889999764 234333222 22456799999965421 1 1 5667899999999999999998
Q ss_pred HhCCCCCCCcchHHHHHHHHHHcCCC
Q 001999 316 VVGVNLKKNPDIEQEADSIVEECGGM 341 (984)
Q Consensus 316 ~~~~~~~~~~~l~~~~~~I~~~c~Gl 341 (984)
.+.... .+--+++++-|++.+.+.
T Consensus 178 ~a~~~~--~~l~~~v~~~l~~~~~~~ 201 (219)
T PF00308_consen 178 KAKERG--IELPEEVIEYLARRFRRD 201 (219)
T ss_dssp HHHHTT----S-HHHHHHHHHHTTSS
T ss_pred HHHHhC--CCCcHHHHHHHHHhhcCC
Confidence 876441 112244666666665543
No 117
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.68 E-value=0.00098 Score=78.46 Aligned_cols=190 Identities=14% Similarity=0.114 Sum_probs=106.5
Q ss_pred CCCCCCchHHHHHHHHHHhccCCcc-EEEEEcCCCChHHHHHHHhhhhcccCCCCC--eEEEEEeCCCCCHHHHHHHHHH
Q 001999 152 HASKFPSHKEYVETLEKHLSSGGLK-KICICGPLGVGKTTIMENSHDSVGESGRFD--IIFWVNVNTDGNISDIQEIILE 228 (984)
Q Consensus 152 ~~~~~vgr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~--~~~wv~vs~~~~~~~i~~~i~~ 228 (984)
.-.+++|.+..++.|.+++..++.. .+-++|+.|+||||+|+...+.+.-..... ...+- .+..-.-.+.|..
T Consensus 22 ~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~----~cg~c~~C~~i~~ 97 (598)
T PRK09111 22 TFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTID----LCGVGEHCQAIME 97 (598)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccc----cCcccHHHHHHhc
Confidence 3467899999999999999876644 688999999999999999555543101000 00000 0000011111111
Q ss_pred HhccCc-----cccch-HHHHHHHHHHH-----cCCcEEEEEECCCCcc--chhhh--ccccCCCCcEEEE-EcCCcccc
Q 001999 229 RLKVNA-----KELDN-AQRADNISKEL-----KDKRYVLFLDGVSSEI--NFKEI--GIHDDHGRGKVVF-ACRSREFC 292 (984)
Q Consensus 229 ~l~~~~-----~~~~~-~~~~~~l~~~L-----~~kr~LlVlDdv~~~~--~~~~~--~~~~~~~gs~ilv-TTR~~~v~ 292 (984)
.-..+. ..... ++ ++.+.+.+ .+++-++|+|++.... ....+ .+..-..++.+|+ ||....+.
T Consensus 98 g~h~Dv~e~~a~s~~gvd~-IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll 176 (598)
T PRK09111 98 GRHVDVLEMDAASHTGVDD-IREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVP 176 (598)
T ss_pred CCCCceEEecccccCCHHH-HHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhh
Confidence 100000 00000 11 11222222 3456789999987643 23322 1222234556655 44444443
Q ss_pred c---cCCceEEccCCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCCchHHHHH
Q 001999 293 W---QADDVIHVERLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGMPYMLKLI 348 (984)
Q Consensus 293 ~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~~ 348 (984)
. .....+++..++.++....+.+.+.... ..--.+....|++.++|.+.-+...
T Consensus 177 ~tI~SRcq~~~f~~l~~~el~~~L~~i~~keg--i~i~~eAl~lIa~~a~Gdlr~al~~ 233 (598)
T PRK09111 177 VTVLSRCQRFDLRRIEADVLAAHLSRIAAKEG--VEVEDEALALIARAAEGSVRDGLSL 233 (598)
T ss_pred HHHHhheeEEEecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 3 5567899999999999999988765431 1112357788999999988655443
No 118
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.66 E-value=3.2e-05 Score=92.24 Aligned_cols=124 Identities=23% Similarity=0.238 Sum_probs=87.9
Q ss_pred hccCeEeeeccCCCCCCC---C-CCCcCceeEEEecCcccCCCc-chHhhcCCCccEEeccCCCCccCCcchhcccccCe
Q 001999 497 WKDTKKLSLFGFPSSTLP---D-MPNCCEILTLIVEGRRLEKLP-MSFFEYMCHLQLLDLHDTSIRCLPPSISRLINLNA 571 (984)
Q Consensus 497 ~~~~r~l~l~~~~~~~l~---~-~~~~~~L~~L~l~~~~l~~l~-~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~ 571 (984)
..++++|.+.|...-.-. . ...+|.|++|.+.+-.+..-. ...+.++++|+.||+|+++++.+ .+|+.|++|+.
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV 199 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence 357788888764332111 1 256799999999976553211 12367899999999999999999 78999999999
Q ss_pred EecCCCcccccC--chhhhccCCCcEEEecCccccccchh-------hhccCCCCeeecc
Q 001999 572 LFLRSCSLLFQL--PKEIRYLQKLEILDVRHTRIQCLPSE-------IGQLIKLKCLRVS 622 (984)
Q Consensus 572 L~L~~c~~l~~l--p~~i~~L~~L~~L~l~~~~l~~lp~~-------~~~L~~L~~L~l~ 622 (984)
|.+++= .+..- -..+.+|++|++||+|.......+.. -..|++||.|+.+
T Consensus 200 L~mrnL-e~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcS 258 (699)
T KOG3665|consen 200 LSMRNL-EFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCS 258 (699)
T ss_pred HhccCC-CCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecC
Confidence 999872 23322 23578899999999998754433311 1248899999988
No 119
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.66 E-value=0.00063 Score=75.02 Aligned_cols=143 Identities=13% Similarity=0.147 Sum_probs=84.0
Q ss_pred CCCCCCchHHHHHHHHHHhccCCc-cEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 001999 152 HASKFPSHKEYVETLEKHLSSGGL-KKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEIILERL 230 (984)
Q Consensus 152 ~~~~~vgr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l 230 (984)
...+++|.++..+.+..++..+.. .++.++|++|+||||+|+...+... .. ...++.+. .....+...+.+..
T Consensus 19 ~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~--~~---~~~i~~~~-~~~~~i~~~l~~~~ 92 (316)
T PHA02544 19 TIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVG--AE---VLFVNGSD-CRIDFVRNRLTRFA 92 (316)
T ss_pred cHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhC--cc---ceEeccCc-ccHHHHHHHHHHHH
Confidence 346789999999999999987654 5666699999999999999666543 22 23344443 22221111111100
Q ss_pred ccCccccchHHHHHHHHHHHcCCcEEEEEECCCCc--cchh-hh--ccccCCCCcEEEEEcCCccccc----cCCceEEc
Q 001999 231 KVNAKELDNAQRADNISKELKDKRYVLFLDGVSSE--INFK-EI--GIHDDHGRGKVVFACRSREFCW----QADDVIHV 301 (984)
Q Consensus 231 ~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~-~~--~~~~~~~gs~ilvTTR~~~v~~----~~~~~~~l 301 (984)
. . ..+.+.+-+||+||+... .+.. .+ .+.....++++|+||....... .....+.+
T Consensus 93 ~-~--------------~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~~ 157 (316)
T PHA02544 93 S-T--------------VSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVIDF 157 (316)
T ss_pred H-h--------------hcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEEEe
Confidence 0 0 001245668999999754 1211 11 1223345678888886543221 44456777
Q ss_pred cCCChHHHHHHHHH
Q 001999 302 ERLSPREAKKLFWE 315 (984)
Q Consensus 302 ~~L~~~~~~~Lf~~ 315 (984)
...+.++..+++..
T Consensus 158 ~~p~~~~~~~il~~ 171 (316)
T PHA02544 158 GVPTKEEQIEMMKQ 171 (316)
T ss_pred CCCCHHHHHHHHHH
Confidence 77777777666544
No 120
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.64 E-value=0.00016 Score=79.39 Aligned_cols=82 Identities=22% Similarity=0.340 Sum_probs=56.2
Q ss_pred hccCeEeeeccCCCCCCCCCCCcCceeEEEecC-cccCCCcchHhhcCCCccEEeccCC-CCccCCcchhcccccCeEec
Q 001999 497 WKDTKKLSLFGFPSSTLPDMPNCCEILTLIVEG-RRLEKLPMSFFEYMCHLQLLDLHDT-SIRCLPPSISRLINLNALFL 574 (984)
Q Consensus 497 ~~~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~-~~l~~l~~~~~~~l~~Lr~L~L~~~-~i~~lp~~i~~l~~L~~L~L 574 (984)
+.+.++|.++++.+..+|.++ .+|++|.+++ +.+..+|.. + ..+|++|++++| .+..+|.+ |++|++
T Consensus 51 ~~~l~~L~Is~c~L~sLP~LP--~sLtsL~Lsnc~nLtsLP~~-L--P~nLe~L~Ls~Cs~L~sLP~s------Le~L~L 119 (426)
T PRK15386 51 ARASGRLYIKDCDIESLPVLP--NELTEITIENCNNLTTLPGS-I--PEGLEKLTVCHCPEISGLPES------VRSLEI 119 (426)
T ss_pred hcCCCEEEeCCCCCcccCCCC--CCCcEEEccCCCCcccCCch-h--hhhhhheEccCcccccccccc------cceEEe
Confidence 467788999988888887433 3689999884 566677754 3 257899999988 78788865 344444
Q ss_pred CC--CcccccCchhhhc
Q 001999 575 RS--CSLLFQLPKEIRY 589 (984)
Q Consensus 575 ~~--c~~l~~lp~~i~~ 589 (984)
.+ |..+..+|+++..
T Consensus 120 ~~n~~~~L~~LPssLk~ 136 (426)
T PRK15386 120 KGSATDSIKNVPNGLTS 136 (426)
T ss_pred CCCCCcccccCcchHhh
Confidence 43 3446677765543
No 121
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.63 E-value=0.0023 Score=73.82 Aligned_cols=180 Identities=13% Similarity=0.122 Sum_probs=106.9
Q ss_pred CCCCCCchHHHHHHHHHHhccCCcc-EEEEEcCCCChHHHHHHHhhhhccc-C-CC----------------CC-eEEEE
Q 001999 152 HASKFPSHKEYVETLEKHLSSGGLK-KICICGPLGVGKTTIMENSHDSVGE-S-GR----------------FD-IIFWV 211 (984)
Q Consensus 152 ~~~~~vgr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~~~~~~~~-~-~~----------------F~-~~~wv 211 (984)
.-.+++|-+..++.+...+..++.. ++-++|+.|+||||+|+...+.+-- . .. ++ .++.+
T Consensus 12 ~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~el 91 (535)
T PRK08451 12 HFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEM 91 (535)
T ss_pred CHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEe
Confidence 3467899999999999999876655 5689999999999999984444310 0 11 11 12222
Q ss_pred EeCCCCCHHHHHHHHHHHhccCccccchHHHHHHHHHHHcCCcEEEEEECCCCcc--chhhh--ccccCCCCcEEEEEcC
Q 001999 212 NVNTDGNISDIQEIILERLKVNAKELDNAQRADNISKELKDKRYVLFLDGVSSEI--NFKEI--GIHDDHGRGKVVFACR 287 (984)
Q Consensus 212 ~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~--~~~~~--~~~~~~~gs~ilvTTR 287 (984)
..+....+..+.. +++.... .-..+++-++|+|++.... ....+ .+..-...+++|++|.
T Consensus 92 daas~~gId~IRe-lie~~~~---------------~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~tt 155 (535)
T PRK08451 92 DAASNRGIDDIRE-LIEQTKY---------------KPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATT 155 (535)
T ss_pred ccccccCHHHHHH-HHHHHhh---------------CcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEEC
Confidence 2221111222211 1111100 0012566789999997643 22222 1222234566666665
Q ss_pred Cc-cccc---cCCceEEccCCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCCchHHHHHH
Q 001999 288 SR-EFCW---QADDVIHVERLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGMPYMLKLIG 349 (984)
Q Consensus 288 ~~-~v~~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~~~ 349 (984)
+. .+.. .....+++.+++.++....+.+.+.... ..--++.+..|++.++|.+.-+....
T Consensus 156 d~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EG--i~i~~~Al~~Ia~~s~GdlR~alnlL 219 (535)
T PRK08451 156 DPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEG--VSYEPEALEILARSGNGSLRDTLTLL 219 (535)
T ss_pred ChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCcHHHHHHHH
Confidence 43 3322 5567999999999999998887765431 11124578899999999985554443
No 122
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.61 E-value=0.0018 Score=76.97 Aligned_cols=190 Identities=14% Similarity=0.130 Sum_probs=106.9
Q ss_pred CCCCCCchHHHHHHHHHHhccCCc-cEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 001999 152 HASKFPSHKEYVETLEKHLSSGGL-KKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEIILERL 230 (984)
Q Consensus 152 ~~~~~vgr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l 230 (984)
.-.+++|.+..++.|..++..+++ ..+.++|+.|+||||+|+...+.+.-..... ....++.-...+.|....
T Consensus 14 ~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~------~~~~c~~c~~c~~i~~~~ 87 (585)
T PRK14950 14 TFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP------KGRPCGTCEMCRAIAEGS 87 (585)
T ss_pred CHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC------CCCCCccCHHHHHHhcCC
Confidence 346789999999999998887654 4568999999999999999655542001000 000111112222222211
Q ss_pred ccCc---c--ccchHHHHHHHHHHH-----cCCcEEEEEECCCCcc--chhhh--ccccCCCCcEEEEEcC-Cccccc--
Q 001999 231 KVNA---K--ELDNAQRADNISKEL-----KDKRYVLFLDGVSSEI--NFKEI--GIHDDHGRGKVVFACR-SREFCW-- 293 (984)
Q Consensus 231 ~~~~---~--~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~~--~~~~~--~~~~~~~gs~ilvTTR-~~~v~~-- 293 (984)
..+. . ....-+....+.+.+ .+++-++|+|++.... ..+.+ .+......+.+|++|. ...+..
T Consensus 88 ~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI 167 (585)
T PRK14950 88 AVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATI 167 (585)
T ss_pred CCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHH
Confidence 1100 0 000011111222222 2467799999986542 23333 1222234456665553 333332
Q ss_pred -cCCceEEccCCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCCchHHHHHH
Q 001999 294 -QADDVIHVERLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGMPYMLKLIG 349 (984)
Q Consensus 294 -~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~~~ 349 (984)
.....+.+..++.++....+.+.+..... .--.+.+..|++.++|.+..+....
T Consensus 168 ~SR~~~i~f~~l~~~el~~~L~~~a~~egl--~i~~eal~~La~~s~Gdlr~al~~L 222 (585)
T PRK14950 168 LSRCQRFDFHRHSVADMAAHLRKIAAAEGI--NLEPGALEAIARAATGSMRDAENLL 222 (585)
T ss_pred HhccceeeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 45578899999999998888887654311 1124578899999999986554443
No 123
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.61 E-value=0.0019 Score=76.56 Aligned_cols=176 Identities=14% Similarity=0.223 Sum_probs=107.4
Q ss_pred CCCCCchHHHHHHHHHHhccCCcc-EEEEEcCCCChHHHHHHHhhhhcc---------------------cCCCCCeEEE
Q 001999 153 ASKFPSHKEYVETLEKHLSSGGLK-KICICGPLGVGKTTIMENSHDSVG---------------------ESGRFDIIFW 210 (984)
Q Consensus 153 ~~~~vgr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~~~~~~~---------------------~~~~F~~~~w 210 (984)
-.+++|.+..++.|..++..+++. .+-++|+.|+||||+|+.....+- ...+|+. ..
T Consensus 16 f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~-~~ 94 (614)
T PRK14971 16 FESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI-HE 94 (614)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce-EE
Confidence 467899999999999999887665 478999999999999998444331 1124442 22
Q ss_pred EEeCCCCCHHHHHHHHHHHhccCccccchHHHHHHHHHHHcCCcEEEEEECCCCcc--chhhh--ccccCCCCcEEEE-E
Q 001999 211 VNVNTDGNISDIQEIILERLKVNAKELDNAQRADNISKELKDKRYVLFLDGVSSEI--NFKEI--GIHDDHGRGKVVF-A 285 (984)
Q Consensus 211 v~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~--~~~~~--~~~~~~~gs~ilv-T 285 (984)
+..+....+..+. ++++++.... ..+++-++|+|++.... .+..+ .+..-..++.+|+ |
T Consensus 95 ld~~~~~~vd~Ir-~li~~~~~~P---------------~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~t 158 (614)
T PRK14971 95 LDAASNNSVDDIR-NLIEQVRIPP---------------QIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILAT 158 (614)
T ss_pred ecccccCCHHHHH-HHHHHHhhCc---------------ccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 2322222222222 2222221100 12456688999987643 33333 1222233455554 5
Q ss_pred cCCccccc---cCCceEEccCCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCCchHHHH
Q 001999 286 CRSREFCW---QADDVIHVERLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGMPYMLKL 347 (984)
Q Consensus 286 TR~~~v~~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~ 347 (984)
|+...+.. .....+++.+++.++....+.+.+.... ..--.+.+..|++.++|..--+..
T Consensus 159 t~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~eg--i~i~~~al~~La~~s~gdlr~al~ 221 (614)
T PRK14971 159 TEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEG--ITAEPEALNVIAQKADGGMRDALS 221 (614)
T ss_pred CCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 55455543 5678899999999999988888765431 111234678899999997754433
No 124
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.60 E-value=0.0012 Score=73.96 Aligned_cols=166 Identities=17% Similarity=0.223 Sum_probs=94.5
Q ss_pred CCCCchHHHHHHHHHHhcc-------------CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHH
Q 001999 154 SKFPSHKEYVETLEKHLSS-------------GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNIS 220 (984)
Q Consensus 154 ~~~vgr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~ 220 (984)
.++.|.+..+++|.+.+.- ...+.+.++|++|+|||++|+....... ..| +.+.. .
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~--~~f-----i~i~~----s 213 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTT--ATF-----IRVVG----S 213 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC--CCE-----EEEeh----H
Confidence 4578999888888776531 2457899999999999999999776665 443 22211 1
Q ss_pred HHHHHHHHHhccCccccchHHHHHHHHHHHcCCcEEEEEECCCCcc------------chh----hhc--cc--cCCCCc
Q 001999 221 DIQEIILERLKVNAKELDNAQRADNISKELKDKRYVLFLDGVSSEI------------NFK----EIG--IH--DDHGRG 280 (984)
Q Consensus 221 ~i~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~------------~~~----~~~--~~--~~~~gs 280 (984)
.+... .++ .........+.......+.+|++|++.... ... .+. +. ....+.
T Consensus 214 ~l~~k---~~g-----e~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v 285 (398)
T PTZ00454 214 EFVQK---YLG-----EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNV 285 (398)
T ss_pred HHHHH---hcc-----hhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCE
Confidence 11111 011 011112222223334678999999976320 111 110 00 123456
Q ss_pred EEEEEcCCccccc-------cCCceEEccCCChHHHHHHHHHHhCCC-CCCCcchHHHHHHHHHHcCCCc
Q 001999 281 KVVFACRSREFCW-------QADDVIHVERLSPREAKKLFWEVVGVN-LKKNPDIEQEADSIVEECGGMP 342 (984)
Q Consensus 281 ~ilvTTR~~~v~~-------~~~~~~~l~~L~~~~~~~Lf~~~~~~~-~~~~~~l~~~~~~I~~~c~GlP 342 (984)
.||+||....... .....+.+..-+.++-.++|+.+.... .....++ .++++.+.|.-
T Consensus 286 ~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~----~~la~~t~g~s 351 (398)
T PTZ00454 286 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDL----EDFVSRPEKIS 351 (398)
T ss_pred EEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCH----HHHHHHcCCCC
Confidence 7888887654433 234578898888888888888765432 1122233 45566666643
No 125
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.60 E-value=0.002 Score=75.43 Aligned_cols=178 Identities=13% Similarity=0.165 Sum_probs=104.8
Q ss_pred CCCCCCchHHHHHHHHHHhccCCccE-EEEEcCCCChHHHHHHHhhhhcccCCCC---------------------CeEE
Q 001999 152 HASKFPSHKEYVETLEKHLSSGGLKK-ICICGPLGVGKTTIMENSHDSVGESGRF---------------------DIIF 209 (984)
Q Consensus 152 ~~~~~vgr~~~~~~l~~~L~~~~~~v-i~I~G~gGiGKTtLa~~~~~~~~~~~~F---------------------~~~~ 209 (984)
.-.+++|.+..++.|.+++..+++.- +.++|+.|+||||+|+.....+.-.... .-++
T Consensus 11 ~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dvi 90 (584)
T PRK14952 11 TFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDVV 90 (584)
T ss_pred cHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceEE
Confidence 34678999999999999998866554 6899999999999999955544200000 0111
Q ss_pred EEEeCCCCCHHHHHHHHHHHhccCccccchHHHHHHHHH-HHcCCcEEEEEECCCCcc--chhhh--ccccCCCCcEEE-
Q 001999 210 WVNVNTDGNISDIQEIILERLKVNAKELDNAQRADNISK-ELKDKRYVLFLDGVSSEI--NFKEI--GIHDDHGRGKVV- 283 (984)
Q Consensus 210 wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~-~L~~kr~LlVlDdv~~~~--~~~~~--~~~~~~~gs~il- 283 (984)
.+..+....+..+ .++...+.. -..+++-++|+|++.... ....+ .+..-.....+|
T Consensus 91 eidaas~~gvd~i-----------------Rel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL 153 (584)
T PRK14952 91 ELDAASHGGVDDT-----------------RELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIF 153 (584)
T ss_pred EeccccccCHHHH-----------------HHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEE
Confidence 2221111111111 111111111 113566799999997542 22222 122222344544
Q ss_pred EEcCCccccc---cCCceEEccCCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCCch-HHHHH
Q 001999 284 FACRSREFCW---QADDVIHVERLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGMPY-MLKLI 348 (984)
Q Consensus 284 vTTR~~~v~~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~GlPl-ai~~~ 348 (984)
+||....+.. .....+++.+++.++..+.+.+.+.... ..--.+....|++.++|.+- |+..+
T Consensus 154 ~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~eg--i~i~~~al~~Ia~~s~GdlR~aln~L 220 (584)
T PRK14952 154 ATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEG--VVVDDAVYPLVIRAGGGSPRDTLSVL 220 (584)
T ss_pred EeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4555555443 5578999999999999888888765431 11124467888999999874 33333
No 126
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.59 E-value=0.00039 Score=77.31 Aligned_cols=109 Identities=18% Similarity=0.191 Sum_probs=73.1
Q ss_pred CCCCCchHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcc
Q 001999 153 ASKFPSHKEYVETLEKHLSSGGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEIILERLKV 232 (984)
Q Consensus 153 ~~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~ 232 (984)
..++++.++..+.+...|.. .+.|.++|++|+|||++|+.....+.....|+.+.||++++.++..+.+..+.-. +.
T Consensus 174 l~d~~i~e~~le~l~~~L~~--~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~-~v 250 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTI--KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPN-GV 250 (459)
T ss_pred hhcccCCHHHHHHHHHHHhc--CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCC-CC
Confidence 35678889999999988874 4577889999999999999977766534678889999999988877665433111 00
Q ss_pred CccccchHHHHHHHHHHHc--CCcEEEEEECCCCc
Q 001999 233 NAKELDNAQRADNISKELK--DKRYVLFLDGVSSE 265 (984)
Q Consensus 233 ~~~~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~ 265 (984)
. ......-....+.+.-+ +++++||+|++...
T Consensus 251 g-y~~~~G~f~~~~~~A~~~p~~~~vliIDEINRa 284 (459)
T PRK11331 251 G-FRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRA 284 (459)
T ss_pred C-eEecCchHHHHHHHHHhcccCCcEEEEehhhcc
Confidence 0 00001111222222222 47899999999654
No 127
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.59 E-value=0.0018 Score=76.30 Aligned_cols=190 Identities=12% Similarity=0.082 Sum_probs=101.6
Q ss_pred CCCCCCchHHHHHHHHHHhccCCcc-EEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEE-eCCCCCHHHHHHHHHHH
Q 001999 152 HASKFPSHKEYVETLEKHLSSGGLK-KICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVN-VNTDGNISDIQEIILER 229 (984)
Q Consensus 152 ~~~~~vgr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~-vs~~~~~~~i~~~i~~~ 229 (984)
.-.+++|.+..+..|.+++..+++. .+.++|+.|+||||+|+...+.+--...++...|.. +...+..-...+.+...
T Consensus 14 ~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g 93 (620)
T PRK14954 14 KFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAG 93 (620)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhcc
Confidence 3467899999999999998876654 488999999999999998544442101110000110 00000000001111000
Q ss_pred hccC-----ccccch-HHHHHHHHHH-----HcCCcEEEEEECCCCcc--chhhh--ccccCCCCcEEE-EEcCCccccc
Q 001999 230 LKVN-----AKELDN-AQRADNISKE-----LKDKRYVLFLDGVSSEI--NFKEI--GIHDDHGRGKVV-FACRSREFCW 293 (984)
Q Consensus 230 l~~~-----~~~~~~-~~~~~~l~~~-----L~~kr~LlVlDdv~~~~--~~~~~--~~~~~~~gs~il-vTTR~~~v~~ 293 (984)
-..+ ...... ++.. .+.+. ..+++-++|+|++.... ....+ .+..-...+.+| +|++...+..
T Consensus 94 ~~~n~~~~d~~s~~~vd~Ir-~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~ 172 (620)
T PRK14954 94 TSLNISEFDAASNNSVDDIR-QLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPA 172 (620)
T ss_pred CCCCeEEecccccCCHHHHH-HHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhH
Confidence 0000 000000 1111 11121 23566689999987643 23333 122222334544 4544444433
Q ss_pred ---cCCceEEccCCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCCchH
Q 001999 294 ---QADDVIHVERLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGMPYM 344 (984)
Q Consensus 294 ---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~GlPla 344 (984)
.....+++.+++.++....+.+.+.... ..--.+.++.|++.++|..--
T Consensus 173 TI~SRc~~vef~~l~~~ei~~~L~~i~~~eg--i~I~~eal~~La~~s~Gdlr~ 224 (620)
T PRK14954 173 TIASRCQRFNFKRIPLDEIQSQLQMICRAEG--IQIDADALQLIARKAQGSMRD 224 (620)
T ss_pred HHHhhceEEecCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHhCCCHHH
Confidence 5678999999999998888877654321 111245788899999996643
No 128
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.57 E-value=1.8e-05 Score=82.57 Aligned_cols=44 Identities=18% Similarity=0.132 Sum_probs=24.6
Q ss_pred hhccccccceeeeecCCchhHHhhhhhhhHHHhhccCCCceEEEecCC
Q 001999 646 ISKLCLLEELIIEVLDPSDRRWKQNVESIAGEIAALEQLTTLHFYFPT 693 (984)
Q Consensus 646 l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 693 (984)
+...+.|+++.+....+... ........+..+++|+.|+|.-|.
T Consensus 181 ~~~~~~leevr~~qN~I~~e----G~~al~eal~~~~~LevLdl~DNt 224 (382)
T KOG1909|consen 181 FQSHPTLEEVRLSQNGIRPE----GVTALAEALEHCPHLEVLDLRDNT 224 (382)
T ss_pred HHhccccceEEEecccccCc----hhHHHHHHHHhCCcceeeecccch
Confidence 45556666666654332211 123455666777777777776443
No 129
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.57 E-value=0.0016 Score=77.08 Aligned_cols=185 Identities=14% Similarity=0.140 Sum_probs=103.2
Q ss_pred CCCCCCchHHHHHHHHHHhccCCc-cEEEEEcCCCChHHHHHHHhhhhcccCC-C--C-CeEEE-EEeCCCCCHHHHHHH
Q 001999 152 HASKFPSHKEYVETLEKHLSSGGL-KKICICGPLGVGKTTIMENSHDSVGESG-R--F-DIIFW-VNVNTDGNISDIQEI 225 (984)
Q Consensus 152 ~~~~~vgr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~~~~~~~~~~-~--F-~~~~w-v~vs~~~~~~~i~~~ 225 (984)
.-.+++|.+..+..|.+++..+++ ..+-++|+.|+||||+|+...+.+--.. . + .|... -+....+|+..
T Consensus 16 ~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvie---- 91 (725)
T PRK07133 16 TFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIE---- 91 (725)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEE----
Confidence 346789999999999999987654 4567999999999999999555442000 0 0 00000 00000001000
Q ss_pred HHHHhccCccccchHHHHHHHHHHH-----cCCcEEEEEECCCCcc--chhhh--ccccCCCCcE-EEEEcCCccccc--
Q 001999 226 ILERLKVNAKELDNAQRADNISKEL-----KDKRYVLFLDGVSSEI--NFKEI--GIHDDHGRGK-VVFACRSREFCW-- 293 (984)
Q Consensus 226 i~~~l~~~~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~~--~~~~~--~~~~~~~gs~-ilvTTR~~~v~~-- 293 (984)
.........+.++.+.+.+ .+++-++|+|++.... .+..+ .+..-..... |++||+...+..
T Consensus 92 ------idaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI 165 (725)
T PRK07133 92 ------MDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTI 165 (725)
T ss_pred ------EeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHH
Confidence 0000000011122222222 3677799999987542 33333 1111122334 445555555543
Q ss_pred -cCCceEEccCCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCCchHHHHH
Q 001999 294 -QADDVIHVERLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGMPYMLKLI 348 (984)
Q Consensus 294 -~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~~ 348 (984)
..+..+++.+++.++....+...+.... ..--.+.+..|++.++|.+--+..+
T Consensus 166 ~SRcq~ieF~~L~~eeI~~~L~~il~keg--I~id~eAl~~LA~lS~GslR~Alsl 219 (725)
T PRK07133 166 LSRVQRFNFRRISEDEIVSRLEFILEKEN--ISYEKNALKLIAKLSSGSLRDALSI 219 (725)
T ss_pred HhhceeEEccCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 4567999999999999988887654331 1112346788999999987544333
No 130
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.57 E-value=0.0028 Score=66.66 Aligned_cols=194 Identities=16% Similarity=0.153 Sum_probs=114.9
Q ss_pred CCCCchH---HHHHHHHHHhcc---CCccEEEEEcCCCChHHHHHHHhhhhcc--cC--CCCCeEEEEEeCCCCCHHHHH
Q 001999 154 SKFPSHK---EYVETLEKHLSS---GGLKKICICGPLGVGKTTIMENSHDSVG--ES--GRFDIIFWVNVNTDGNISDIQ 223 (984)
Q Consensus 154 ~~~vgr~---~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~~~~~~~--~~--~~F~~~~wv~vs~~~~~~~i~ 223 (984)
+..+|-. +.++++.+++.. ...+-+.|||.+|.|||++++....... .. ..--.++.|.....++...+.
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y 113 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFY 113 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHH
Confidence 3355543 334445555544 3567789999999999999998333222 00 111157778888889999999
Q ss_pred HHHHHHhccCccccch-HHHHHHHHHHHcC-CcEEEEEECCCCcc-----c----hhhh-ccccCCCCcEEEEEcCCccc
Q 001999 224 EIILERLKVNAKELDN-AQRADNISKELKD-KRYVLFLDGVSSEI-----N----FKEI-GIHDDHGRGKVVFACRSREF 291 (984)
Q Consensus 224 ~~i~~~l~~~~~~~~~-~~~~~~l~~~L~~-kr~LlVlDdv~~~~-----~----~~~~-~~~~~~~gs~ilvTTR~~~v 291 (984)
..|+.+++........ +.+.......++. +--+||+|.+.+.. + ...+ .+.+.-.=+-|.|-|+.-.-
T Consensus 114 ~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~ 193 (302)
T PF05621_consen 114 SAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYR 193 (302)
T ss_pred HHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHH
Confidence 9999999988755444 4444444555553 55689999997631 1 1111 12233344456666665433
Q ss_pred cc-------cCCceEEccCCChH-HHHHHHHHHhC---CCCCCCcchHHHHHHHHHHcCCCchHHHH
Q 001999 292 CW-------QADDVIHVERLSPR-EAKKLFWEVVG---VNLKKNPDIEQEADSIVEECGGMPYMLKL 347 (984)
Q Consensus 292 ~~-------~~~~~~~l~~L~~~-~~~~Lf~~~~~---~~~~~~~~l~~~~~~I~~~c~GlPlai~~ 347 (984)
+- +-..++.++.-..+ +...|+...-. -.....-...++++.|...++|+.--+..
T Consensus 194 al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~ 260 (302)
T PF05621_consen 194 ALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSR 260 (302)
T ss_pred HhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHH
Confidence 22 33455666655544 44444433211 11122234477999999999998654433
No 131
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.56 E-value=0.0015 Score=69.51 Aligned_cols=158 Identities=15% Similarity=0.165 Sum_probs=100.7
Q ss_pred CCCCCchHHHHHHHHHHhccCC---ccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 001999 153 ASKFPSHKEYVETLEKHLSSGG---LKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEIILER 229 (984)
Q Consensus 153 ~~~~vgr~~~~~~l~~~L~~~~---~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~ 229 (984)
.+.+.+|+.++..+..++-+.. ...|.|+|-.|.|||.+.++.-+... ...+|+++-..++.+-+.+.|+..
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n-----~~~vw~n~~ecft~~~lle~IL~~ 79 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLN-----LENVWLNCVECFTYAILLEKILNK 79 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcC-----CcceeeehHHhccHHHHHHHHHHH
Confidence 4568899999999999887632 34458999999999999999554443 236899999999999999999999
Q ss_pred hcc-Cccccc-h------HHHHHHHHH--HHc--CCcEEEEEECCCCccchhhhccc--------cCCCCcEEEEEcCCc
Q 001999 230 LKV-NAKELD-N------AQRADNISK--ELK--DKRYVLFLDGVSSEINFKEIGIH--------DDHGRGKVVFACRSR 289 (984)
Q Consensus 230 l~~-~~~~~~-~------~~~~~~l~~--~L~--~kr~LlVlDdv~~~~~~~~~~~~--------~~~~gs~ilvTTR~~ 289 (984)
++. +.+... + .+....+.+ ... ++.++||||++....|.+.+.++ ...+...| +++-..
T Consensus 80 ~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~i-ils~~~ 158 (438)
T KOG2543|consen 80 SQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVI-ILSAPS 158 (438)
T ss_pred hccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEE-EEeccc
Confidence 852 222111 1 111222222 112 46899999999887666554332 22333333 332211
Q ss_pred --cc-cc--cC--CceEEccCCChHHHHHHHHHH
Q 001999 290 --EF-CW--QA--DDVIHVERLSPREAKKLFWEV 316 (984)
Q Consensus 290 --~v-~~--~~--~~~~~l~~L~~~~~~~Lf~~~ 316 (984)
.. .. ++ ..++..+.-+.+|...++.+.
T Consensus 159 ~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 159 CEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred cHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 11 10 22 235666777888887777653
No 132
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.55 E-value=0.0018 Score=79.05 Aligned_cols=175 Identities=14% Similarity=0.186 Sum_probs=104.0
Q ss_pred CCCCCchHHHHHHHHHHhccCCcc-EEEEEcCCCChHHHHHHHhhhhcccCC----------------------CCCeEE
Q 001999 153 ASKFPSHKEYVETLEKHLSSGGLK-KICICGPLGVGKTTIMENSHDSVGESG----------------------RFDIIF 209 (984)
Q Consensus 153 ~~~~vgr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~~~~~~~~~~----------------------~F~~~~ 209 (984)
-.+++|.+..++.|..++..+++. .+.++|+.|+||||+|+...+.+.-.. +++ ++
T Consensus 14 f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~d-v~ 92 (824)
T PRK07764 14 FAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLD-VT 92 (824)
T ss_pred HHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCc-EE
Confidence 457899999999999999886654 578999999999999998554442001 111 12
Q ss_pred EEEeCCCCCHHHHHHHHHHHhccCccccchHHHHHHHHHHHcCCcEEEEEECCCCcc--chhhh--ccccCCCCcEEEE-
Q 001999 210 WVNVNTDGNISDIQEIILERLKVNAKELDNAQRADNISKELKDKRYVLFLDGVSSEI--NFKEI--GIHDDHGRGKVVF- 284 (984)
Q Consensus 210 wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~--~~~~~--~~~~~~~gs~ilv- 284 (984)
++.-.....+..+. ++.+.+ ...-..++.-++|||++.... ..+.+ .+..-...+.+|+
T Consensus 93 eidaas~~~Vd~iR-~l~~~~---------------~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~ 156 (824)
T PRK07764 93 EIDAASHGGVDDAR-ELRERA---------------FFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFA 156 (824)
T ss_pred EecccccCCHHHHH-HHHHHH---------------HhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEE
Confidence 22211111111111 111110 011134667789999998653 22222 1222234455554
Q ss_pred EcCCccccc---cCCceEEccCCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCCchHHH
Q 001999 285 ACRSREFCW---QADDVIHVERLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGMPYMLK 346 (984)
Q Consensus 285 TTR~~~v~~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~ 346 (984)
||....+.. .....|++..++.++..+.+.+.+.... ..--.+....|++.++|.+..+.
T Consensus 157 tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EG--v~id~eal~lLa~~sgGdlR~Al 219 (824)
T PRK07764 157 TTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEG--VPVEPGVLPLVIRAGGGSVRDSL 219 (824)
T ss_pred eCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHH
Confidence 444444443 5678899999999999888888664331 11123456789999999885443
No 133
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.53 E-value=0.0031 Score=72.71 Aligned_cols=174 Identities=13% Similarity=0.137 Sum_probs=102.5
Q ss_pred CCCCCchHHHHHHHHHHhccCCcc-EEEEEcCCCChHHHHHHHhhhhccc--C-----------------CCCCeEEEEE
Q 001999 153 ASKFPSHKEYVETLEKHLSSGGLK-KICICGPLGVGKTTIMENSHDSVGE--S-----------------GRFDIIFWVN 212 (984)
Q Consensus 153 ~~~~vgr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~~~~~~~~--~-----------------~~F~~~~wv~ 212 (984)
-.+++|.+..+..+.+++..+++. .+.++|+.|+||||+|+.....+.- . ..|...+++.
T Consensus 15 f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eid 94 (486)
T PRK14953 15 FKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEID 94 (486)
T ss_pred HHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEe
Confidence 456899999999999999876544 5678999999999999995554420 0 0111122222
Q ss_pred eCCCCCHHHHHHHHHHHhccCccccchHHHHHHHHHHH-----cCCcEEEEEECCCCcc--chhhh--ccccCCCCcEEE
Q 001999 213 VNTDGNISDIQEIILERLKVNAKELDNAQRADNISKEL-----KDKRYVLFLDGVSSEI--NFKEI--GIHDDHGRGKVV 283 (984)
Q Consensus 213 vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~~--~~~~~--~~~~~~~gs~il 283 (984)
.+....+. ..+.+.+.+ .+++-++|+|++.... ....+ .+........+|
T Consensus 95 aas~~gvd---------------------~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~I 153 (486)
T PRK14953 95 AASNRGID---------------------DIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFI 153 (486)
T ss_pred CccCCCHH---------------------HHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEE
Confidence 21111111 111222222 3567799999987542 22332 122222334444
Q ss_pred E-EcCCccccc---cCCceEEccCCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCCchHHHHHH
Q 001999 284 F-ACRSREFCW---QADDVIHVERLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGMPYMLKLIG 349 (984)
Q Consensus 284 v-TTR~~~v~~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~~~ 349 (984)
+ ||+...+.. .....+.+.+++.++....+.+.+.... ..--.+.+..|++.++|.+..+....
T Consensus 154 l~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~eg--i~id~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 154 LCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEK--IEYEEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred EEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4 444444432 4456899999999999888887665431 11123567788889999776554443
No 134
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.52 E-value=0.017 Score=71.39 Aligned_cols=153 Identities=16% Similarity=0.178 Sum_probs=84.5
Q ss_pred CCCCchHHHHHHHHHHhcc------CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHHH
Q 001999 154 SKFPSHKEYVETLEKHLSS------GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEIIL 227 (984)
Q Consensus 154 ~~~vgr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~ 227 (984)
.+++|.++.++.|.+++.. ...+++.++|++|+|||++|+....... ..|-. ++++...+..++...
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~--~~~~~---i~~~~~~~~~~i~g~-- 392 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALN--RKFVR---FSLGGVRDEAEIRGH-- 392 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhc--CCeEE---EeCCCcccHHHHcCC--
Confidence 4578999999999887642 2456899999999999999999777765 44422 223332333322110
Q ss_pred HHhccCccccchHHHHHHHHHHHcCCcEEEEEECCCCccc---------hhhhc-------cccC-------CCCcEEEE
Q 001999 228 ERLKVNAKELDNAQRADNISKELKDKRYVLFLDGVSSEIN---------FKEIG-------IHDD-------HGRGKVVF 284 (984)
Q Consensus 228 ~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~---------~~~~~-------~~~~-------~~gs~ilv 284 (984)
...............+.+. ..++-+++||++..... +-.+. +.+. ..+.-+|.
T Consensus 393 ---~~~~~g~~~g~i~~~l~~~-~~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~ 468 (775)
T TIGR00763 393 ---RRTYVGAMPGRIIQGLKKA-KTKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIA 468 (775)
T ss_pred ---CCceeCCCCchHHHHHHHh-CcCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEEE
Confidence 0000011112223333332 23445889999865411 11110 1111 12233344
Q ss_pred EcCCccc-cc---cCCceEEccCCChHHHHHHHHHHh
Q 001999 285 ACRSREF-CW---QADDVIHVERLSPREAKKLFWEVV 317 (984)
Q Consensus 285 TTR~~~v-~~---~~~~~~~l~~L~~~~~~~Lf~~~~ 317 (984)
||..... .. .....+.+.+++.++-..+++++.
T Consensus 469 TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 469 TANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred ecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHH
Confidence 4443322 22 445688999999988888887653
No 135
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.52 E-value=0.0023 Score=73.34 Aligned_cols=175 Identities=14% Similarity=0.117 Sum_probs=102.4
Q ss_pred CCCCCCchHHHHHHHHHHhccCCc-cEEEEEcCCCChHHHHHHHhhhhcccC---------------------CCCCeEE
Q 001999 152 HASKFPSHKEYVETLEKHLSSGGL-KKICICGPLGVGKTTIMENSHDSVGES---------------------GRFDIIF 209 (984)
Q Consensus 152 ~~~~~vgr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~~~~~~~~~---------------------~~F~~~~ 209 (984)
.-.+++|.+..++.+.+++..++. ..+-++|+.|+||||+|+...+.+-.. .+++ .+
T Consensus 15 ~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d-~~ 93 (451)
T PRK06305 15 TFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD-VL 93 (451)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc-eE
Confidence 346789999999999999987665 567899999999999999955544210 1122 11
Q ss_pred EEEeCCCCCHHHHHHHHHHHhccCccccchHHHHHHHHHHHcCCcEEEEEECCCCcc--chhhh--ccccCCCCcEEEEE
Q 001999 210 WVNVNTDGNISDIQEIILERLKVNAKELDNAQRADNISKELKDKRYVLFLDGVSSEI--NFKEI--GIHDDHGRGKVVFA 285 (984)
Q Consensus 210 wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~--~~~~~--~~~~~~~gs~ilvT 285 (984)
++.-.....+.. .+++.+.+. ..-..+++-++|+|++.... ....+ .+.....+..+|++
T Consensus 94 ~i~g~~~~gid~-ir~i~~~l~---------------~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~ 157 (451)
T PRK06305 94 EIDGASHRGIED-IRQINETVL---------------FTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLA 157 (451)
T ss_pred EeeccccCCHHH-HHHHHHHHH---------------hhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEE
Confidence 111111111111 111111110 01123667789999986542 22222 12222235556655
Q ss_pred c-CCccccc---cCCceEEccCCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCCchHH
Q 001999 286 C-RSREFCW---QADDVIHVERLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGMPYML 345 (984)
Q Consensus 286 T-R~~~v~~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~GlPlai 345 (984)
| +...+.. .....+++.++++++....+.+.+.... ..--++.++.|++.++|.+--+
T Consensus 158 t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg--~~i~~~al~~L~~~s~gdlr~a 219 (451)
T PRK06305 158 TTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEG--IETSREALLPIARAAQGSLRDA 219 (451)
T ss_pred eCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHH
Confidence 5 3333332 5567899999999999888887664331 1112457888999999977433
No 136
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.0038 Score=71.50 Aligned_cols=151 Identities=19% Similarity=0.258 Sum_probs=93.4
Q ss_pred CCCCCchHHHHHHHHHHhcc------CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHH
Q 001999 153 ASKFPSHKEYVETLEKHLSS------GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEII 226 (984)
Q Consensus 153 ~~~~vgr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i 226 (984)
..+-+|.++-+++|++++.- .+.+++..+|++|+|||.+|+..+.... +.| +-++|+.-.|+.+|-..=
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALn--RkF---fRfSvGG~tDvAeIkGHR 484 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALN--RKF---FRFSVGGMTDVAEIKGHR 484 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhC--Cce---EEEeccccccHHhhcccc
Confidence 35568999999999999863 4679999999999999999999777776 555 224566655655443110
Q ss_pred HHHhccCccccchHHHHHHHHHHH---cCCcEEEEEECCCCcc---------chhhhcccc------------CCCCcEE
Q 001999 227 LERLKVNAKELDNAQRADNISKEL---KDKRYVLFLDGVSSEI---------NFKEIGIHD------------DHGRGKV 282 (984)
Q Consensus 227 ~~~l~~~~~~~~~~~~~~~l~~~L---~~kr~LlVlDdv~~~~---------~~~~~~~~~------------~~~gs~i 282 (984)
-..+ ...-.++.+.| +...-|+.+|.|+... .+-++.-|. ---=|||
T Consensus 485 RTYV---------GAMPGkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkV 555 (906)
T KOG2004|consen 485 RTYV---------GAMPGKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKV 555 (906)
T ss_pred eeee---------ccCChHHHHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhhe
Confidence 0000 22233444444 3467799999996521 111221220 0112566
Q ss_pred EEEcCCccccc------cCCceEEccCCChHHHHHHHHHHh
Q 001999 283 VFACRSREFCW------QADDVIHVERLSPREAKKLFWEVV 317 (984)
Q Consensus 283 lvTTR~~~v~~------~~~~~~~l~~L~~~~~~~Lf~~~~ 317 (984)
++...-..+.. ..-..|++.+...+|-..+-.++.
T Consensus 556 LFicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 556 LFICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred EEEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhh
Confidence 65433222222 455688999998888888777764
No 137
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.50 E-value=0.0044 Score=67.75 Aligned_cols=187 Identities=11% Similarity=0.149 Sum_probs=117.4
Q ss_pred CCCCCCchHHHHHHHHHHhcc----CCccEEEEEcCCCChHHHHHHHhhhhcccC-CCCCeEEEEEeCCCCCHHHHHHHH
Q 001999 152 HASKFPSHKEYVETLEKHLSS----GGLKKICICGPLGVGKTTIMENSHDSVGES-GRFDIIFWVNVNTDGNISDIQEII 226 (984)
Q Consensus 152 ~~~~~vgr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~-~~F~~~~wv~vs~~~~~~~i~~~i 226 (984)
+++.++||+.+++.+.+|+.. +...-+-|.|-+|.|||.+...+..+.... .. .++++++...-.....+...|
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~-~~~v~inc~sl~~~~aiF~kI 226 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKS-PVTVYINCTSLTEASAIFKKI 226 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhccc-ceeEEEeeccccchHHHHHHH
Confidence 457789999999999998865 567788999999999999999865555411 22 245666655445677888888
Q ss_pred HHHhccCc-cccchHHHHHHHHHHHcCC--cEEEEEECCCCcc-----c-hhhhccccCCCCcEEEEEcCCc-------c
Q 001999 227 LERLKVNA-KELDNAQRADNISKELKDK--RYVLFLDGVSSEI-----N-FKEIGIHDDHGRGKVVFACRSR-------E 290 (984)
Q Consensus 227 ~~~l~~~~-~~~~~~~~~~~l~~~L~~k--r~LlVlDdv~~~~-----~-~~~~~~~~~~~gs~ilvTTR~~-------~ 290 (984)
...+-... ......+....+.++.++. -+|+|+|..+... . +.-+.+| .-+++++|+.=--. .
T Consensus 227 ~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp-~lp~sr~iLiGiANslDlTdR~ 305 (529)
T KOG2227|consen 227 FSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWP-KLPNSRIILIGIANSLDLTDRF 305 (529)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcc-cCCcceeeeeeehhhhhHHHHH
Confidence 88772222 2222255666777777654 5899999986421 1 1111122 23455555421111 0
Q ss_pred ccc------cCCceEEccCCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCC
Q 001999 291 FCW------QADDVIHVERLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGM 341 (984)
Q Consensus 291 v~~------~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~Gl 341 (984)
... -....+...|.+.++-.+++..+..... ..+.+....+-+|+|+.|.
T Consensus 306 LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~-t~~~~~~Aie~~ArKvaa~ 361 (529)
T KOG2227|consen 306 LPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEES-TSIFLNAAIELCARKVAAP 361 (529)
T ss_pred hhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhccc-ccccchHHHHHHHHHhccC
Confidence 111 3456788899999999999999876542 2223334555556665543
No 138
>PRK06620 hypothetical protein; Validated
Probab=97.48 E-value=0.0009 Score=68.53 Aligned_cols=128 Identities=11% Similarity=0.017 Sum_probs=75.7
Q ss_pred cEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHHHHHhccCccccchHHHHHHHHHHHcCCcE
Q 001999 176 KKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEIILERLKVNAKELDNAQRADNISKELKDKRY 255 (984)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~kr~ 255 (984)
+.+.|+|+.|+|||+|++....... . .++. ..+.. + +.. +..-
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~--~-----~~~~--~~~~~--------------------~-------~~~-~~~d 87 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN--A-----YIIK--DIFFN--------------------E-------EIL-EKYN 87 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC--C-----EEcc--hhhhc--------------------h-------hHH-hcCC
Confidence 5689999999999999998554433 1 1111 10000 0 011 2335
Q ss_pred EEEEECCCCccchh--hhccccCCCCcEEEEEcCCcccc----c-----cCCceEEccCCChHHHHHHHHHHhCCCCCCC
Q 001999 256 VLFLDGVSSEINFK--EIGIHDDHGRGKVVFACRSREFC----W-----QADDVIHVERLSPREAKKLFWEVVGVNLKKN 324 (984)
Q Consensus 256 LlVlDdv~~~~~~~--~~~~~~~~~gs~ilvTTR~~~v~----~-----~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~ 324 (984)
+|++||+....+.. .+.-.....|..||+|++..... . ....+++++++++++-..++++.+... .-
T Consensus 88 ~lliDdi~~~~~~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~--~l 165 (214)
T PRK06620 88 AFIIEDIENWQEPALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSIS--SV 165 (214)
T ss_pred EEEEeccccchHHHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHc--CC
Confidence 78899997432211 11011225577899998754321 1 456689999999999888888776532 11
Q ss_pred cchHHHHHHHHHHcCCCc
Q 001999 325 PDIEQEADSIVEECGGMP 342 (984)
Q Consensus 325 ~~l~~~~~~I~~~c~GlP 342 (984)
.--+++.+-|++.+.|.-
T Consensus 166 ~l~~ev~~~L~~~~~~d~ 183 (214)
T PRK06620 166 TISRQIIDFLLVNLPREY 183 (214)
T ss_pred CCCHHHHHHHHHHccCCH
Confidence 112456777777776643
No 139
>CHL00181 cbbX CbbX; Provisional
Probab=97.48 E-value=0.0016 Score=69.82 Aligned_cols=150 Identities=13% Similarity=0.125 Sum_probs=79.8
Q ss_pred CCCchHHHHHHHHHHh---cc------------CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCH
Q 001999 155 KFPSHKEYVETLEKHL---SS------------GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNI 219 (984)
Q Consensus 155 ~~vgr~~~~~~l~~~L---~~------------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~ 219 (984)
+++|.+..+++|.++. .- .....+.++|++|+||||+|+...+.......-...-|+.++.
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~---- 99 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR---- 99 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH----
Confidence 4677776666554432 10 1233578999999999999999655432111111112454442
Q ss_pred HHHHHHHHHHhccCccccchHHHHHHHHHHHcCCcEEEEEECCCCc------cchh-----hh--ccccCCCCcEEEEEc
Q 001999 220 SDIQEIILERLKVNAKELDNAQRADNISKELKDKRYVLFLDGVSSE------INFK-----EI--GIHDDHGRGKVVFAC 286 (984)
Q Consensus 220 ~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~------~~~~-----~~--~~~~~~~gs~ilvTT 286 (984)
..+.... .+ .. .......+.+ . ..-+|++|++... .++. .+ .+.+...+.+||+++
T Consensus 100 ~~l~~~~---~g-~~----~~~~~~~l~~-a--~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag 168 (287)
T CHL00181 100 DDLVGQY---IG-HT----APKTKEVLKK-A--MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAG 168 (287)
T ss_pred HHHHHHH---hc-cc----hHHHHHHHHH-c--cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 1222211 11 10 1111222222 1 2249999999642 1121 11 122334456777776
Q ss_pred CCcccc------c----cCCceEEccCCChHHHHHHHHHHhCC
Q 001999 287 RSREFC------W----QADDVIHVERLSPREAKKLFWEVVGV 319 (984)
Q Consensus 287 R~~~v~------~----~~~~~~~l~~L~~~~~~~Lf~~~~~~ 319 (984)
....+. . .....+.+++++.++..+++.+.+..
T Consensus 169 ~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~ 211 (287)
T CHL00181 169 YKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEE 211 (287)
T ss_pred CcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHH
Confidence 543321 1 45668999999999999998887654
No 140
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.47 E-value=0.0016 Score=73.30 Aligned_cols=134 Identities=20% Similarity=0.167 Sum_probs=85.2
Q ss_pred chHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHHHHHhccCcccc
Q 001999 158 SHKEYVETLEKHLSSGGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEIILERLKVNAKEL 237 (984)
Q Consensus 158 gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~ 237 (984)
.|..-..++.+.+..... ++.|+|+-++||||+++...+... .. .+++..-+......-+.+...
T Consensus 21 ~~~~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~--~~---~iy~~~~d~~~~~~~l~d~~~--------- 85 (398)
T COG1373 21 ERRKLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLL--EE---IIYINFDDLRLDRIELLDLLR--------- 85 (398)
T ss_pred hHHhhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCC--cc---eEEEEecchhcchhhHHHHHH---------
Confidence 344555666666654333 999999999999999977555554 22 555543332111111111111
Q ss_pred chHHHHHHHHHHHcCCcEEEEEECCCCccchhhh--ccccCCCCcEEEEEcCCccccc--------cCCceEEccCCChH
Q 001999 238 DNAQRADNISKELKDKRYVLFLDGVSSEINFKEI--GIHDDHGRGKVVFACRSREFCW--------QADDVIHVERLSPR 307 (984)
Q Consensus 238 ~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~--~~~~~~~gs~ilvTTR~~~v~~--------~~~~~~~l~~L~~~ 307 (984)
.+.+.-..++..|+||.|....+|+.. .+.+..+. +|++|+-+..... |....+.+.||+..
T Consensus 86 -------~~~~~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~ 157 (398)
T COG1373 86 -------AYIELKEREKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFR 157 (398)
T ss_pred -------HHHHhhccCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHH
Confidence 111111127889999999999999876 33355555 8998887766533 66778999999999
Q ss_pred HHHHHHH
Q 001999 308 EAKKLFW 314 (984)
Q Consensus 308 ~~~~Lf~ 314 (984)
|...+-.
T Consensus 158 Efl~~~~ 164 (398)
T COG1373 158 EFLKLKG 164 (398)
T ss_pred HHHhhcc
Confidence 9877643
No 141
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.47 E-value=0.0006 Score=76.91 Aligned_cols=148 Identities=15% Similarity=0.203 Sum_probs=86.9
Q ss_pred CCCCchHHHHHHHHHHhcc-------------CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHH
Q 001999 154 SKFPSHKEYVETLEKHLSS-------------GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNIS 220 (984)
Q Consensus 154 ~~~vgr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~ 220 (984)
.++.|.+..+++|.+.+.- ...+.+.++|++|+|||++|+.+..... ..| +.+..+.
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~--~~f---i~V~~se----- 252 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETS--ATF---LRVVGSE----- 252 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhC--CCE---EEEecch-----
Confidence 3467999999888876631 2345788999999999999999877765 444 1221111
Q ss_pred HHHHHHHHHhccCccccchHHHHHHHHHHHcCCcEEEEEECCCCcc------------ch----hhh--ccc--cCCCCc
Q 001999 221 DIQEIILERLKVNAKELDNAQRADNISKELKDKRYVLFLDGVSSEI------------NF----KEI--GIH--DDHGRG 280 (984)
Q Consensus 221 ~i~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~------------~~----~~~--~~~--~~~~gs 280 (984)
+.... .+ .........+.....+.+.+|+||++.... +. ..+ .+. ....+.
T Consensus 253 -L~~k~---~G-----e~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V 323 (438)
T PTZ00361 253 -LIQKY---LG-----DGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDV 323 (438)
T ss_pred -hhhhh---cc-----hHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCe
Confidence 11100 00 000111222222334578899999974310 01 011 000 123456
Q ss_pred EEEEEcCCccccc-------cCCceEEccCCChHHHHHHHHHHhCCC
Q 001999 281 KVVFACRSREFCW-------QADDVIHVERLSPREAKKLFWEVVGVN 320 (984)
Q Consensus 281 ~ilvTTR~~~v~~-------~~~~~~~l~~L~~~~~~~Lf~~~~~~~ 320 (984)
+||+||....... .....+.+...+.++-.++|..++..-
T Consensus 324 ~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~ 370 (438)
T PTZ00361 324 KVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKM 370 (438)
T ss_pred EEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcC
Confidence 7888887554433 234578999999999999999876543
No 142
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.46 E-value=0.001 Score=82.59 Aligned_cols=151 Identities=17% Similarity=0.143 Sum_probs=88.6
Q ss_pred CCCCchHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHhhhhcccC---CCC-CeEEEEEeCCCCCHHHHHHHHHHH
Q 001999 154 SKFPSHKEYVETLEKHLSSGGLKKICICGPLGVGKTTIMENSHDSVGES---GRF-DIIFWVNVNTDGNISDIQEIILER 229 (984)
Q Consensus 154 ~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~---~~F-~~~~wv~vs~~~~~~~i~~~i~~~ 229 (984)
..++||+++++.+++.|.....+-+.++|++|+|||++|+....++... ... +..+|.- |...++.
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l-----~~~~l~a----- 248 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITL-----DIGLLLA----- 248 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe-----eHHHHhc-----
Confidence 5689999999999999987555556799999999999999866655311 111 3445531 2222211
Q ss_pred hccCccccchHHHHHHHHHHH-cCCcEEEEEECCCCc---------cchhhhccccCCCC-cEEEEEcCCccc----cc-
Q 001999 230 LKVNAKELDNAQRADNISKEL-KDKRYVLFLDGVSSE---------INFKEIGIHDDHGR-GKVVFACRSREF----CW- 293 (984)
Q Consensus 230 l~~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~---------~~~~~~~~~~~~~g-s~ilvTTR~~~v----~~- 293 (984)
.......-++....+.+.+ +.++.+|++|++... .+...+..|.-.+| -++|.+|..... ..
T Consensus 249 --g~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg~l~~IgaTt~~ey~~~ie~D 326 (821)
T CHL00095 249 --GTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKD 326 (821)
T ss_pred --cCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCCCcEEEEeCCHHHHHHHHhcC
Confidence 1111111133333333333 356899999998532 12223333422223 455555554432 11
Q ss_pred ----cCCceEEccCCChHHHHHHHHHH
Q 001999 294 ----QADDVIHVERLSPREAKKLFWEV 316 (984)
Q Consensus 294 ----~~~~~~~l~~L~~~~~~~Lf~~~ 316 (984)
.....+.+...+.++...+++..
T Consensus 327 ~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 327 PALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 55567899999999988888754
No 143
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=0.0059 Score=70.40 Aligned_cols=150 Identities=17% Similarity=0.192 Sum_probs=92.6
Q ss_pred CCCCchHHHHHHHHHHhcc------CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHHH
Q 001999 154 SKFPSHKEYVETLEKHLSS------GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEIIL 227 (984)
Q Consensus 154 ~~~vgr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~ 227 (984)
.+-+|.++..++|+++|.- -+.+++++||++|+|||+|++..++... +.|- -++++.-.|..+|--.=-
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~--Rkfv---R~sLGGvrDEAEIRGHRR 397 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALG--RKFV---RISLGGVRDEAEIRGHRR 397 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhC--CCEE---EEecCccccHHHhccccc
Confidence 4558999999999999863 3568999999999999999999888887 6662 234444444443321100
Q ss_pred HHhccCccccchHHHHHHHHHHH---cCCcEEEEEECCCCcc---------chhhhcccc------------CCCCcEEE
Q 001999 228 ERLKVNAKELDNAQRADNISKEL---KDKRYVLFLDGVSSEI---------NFKEIGIHD------------DHGRGKVV 283 (984)
Q Consensus 228 ~~l~~~~~~~~~~~~~~~l~~~L---~~kr~LlVlDdv~~~~---------~~~~~~~~~------------~~~gs~il 283 (984)
..+ ..+-.++.+.+ +.+.-+++||.++... .+-++.-|. .--=|+|+
T Consensus 398 TYI---------GamPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~Vm 468 (782)
T COG0466 398 TYI---------GAMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVM 468 (782)
T ss_pred ccc---------ccCChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheE
Confidence 000 22222333322 4578899999996531 111221220 01123444
Q ss_pred -EEcCCc-c-ccc---cCCceEEccCCChHHHHHHHHHHh
Q 001999 284 -FACRSR-E-FCW---QADDVIHVERLSPREAKKLFWEVV 317 (984)
Q Consensus 284 -vTTR~~-~-v~~---~~~~~~~l~~L~~~~~~~Lf~~~~ 317 (984)
|||-+. + +.. ..-.++++.+.+++|-.+.-+++.
T Consensus 469 FiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 469 FIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 444332 2 222 667799999999999998888875
No 144
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.45 E-value=0.0013 Score=70.12 Aligned_cols=150 Identities=16% Similarity=0.127 Sum_probs=76.4
Q ss_pred CCCchHHHHHHHHH---Hhcc------------CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCH
Q 001999 155 KFPSHKEYVETLEK---HLSS------------GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNI 219 (984)
Q Consensus 155 ~~vgr~~~~~~l~~---~L~~------------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~ 219 (984)
.++|.+..+++|.+ +..- +...-+.++|++|+||||+|+...+.+.....-....++.++.
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~---- 82 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER---- 82 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH----
Confidence 47888776666543 3211 2455678999999999999999655432111111112333322
Q ss_pred HHHHHHHHHHhccCccccchHHHHHHHHHHHcCCcEEEEEECCCCcc----------chhhhc--cccCCCCcEEEEEcC
Q 001999 220 SDIQEIILERLKVNAKELDNAQRADNISKELKDKRYVLFLDGVSSEI----------NFKEIG--IHDDHGRGKVVFACR 287 (984)
Q Consensus 220 ~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~----------~~~~~~--~~~~~~gs~ilvTTR 287 (984)
.++.... ++ .........+.+ .. .-+|++|++.... ....+. +........+++++.
T Consensus 83 ~~l~~~~---~g-----~~~~~~~~~~~~-a~--~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~ 151 (261)
T TIGR02881 83 ADLVGEY---IG-----HTAQKTREVIKK-AL--GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGY 151 (261)
T ss_pred HHhhhhh---cc-----chHHHHHHHHHh-cc--CCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCC
Confidence 1111110 00 001111222222 12 3489999997521 112221 112222334555554
Q ss_pred Cccc------cc----cCCceEEccCCChHHHHHHHHHHhCC
Q 001999 288 SREF------CW----QADDVIHVERLSPREAKKLFWEVVGV 319 (984)
Q Consensus 288 ~~~v------~~----~~~~~~~l~~L~~~~~~~Lf~~~~~~ 319 (984)
.... .. .....+.+++++.++-.+++++.+..
T Consensus 152 ~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~ 193 (261)
T TIGR02881 152 SDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKE 193 (261)
T ss_pred cchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHH
Confidence 3322 11 33457889999999999999887754
No 145
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.44 E-value=0.0013 Score=80.56 Aligned_cols=154 Identities=16% Similarity=0.181 Sum_probs=90.4
Q ss_pred CCCCCchHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHhhhhcccC---CCC-CeEEEEEeCCCCCHHHHHHHHHH
Q 001999 153 ASKFPSHKEYVETLEKHLSSGGLKKICICGPLGVGKTTIMENSHDSVGES---GRF-DIIFWVNVNTDGNISDIQEIILE 228 (984)
Q Consensus 153 ~~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~---~~F-~~~~wv~vs~~~~~~~i~~~i~~ 228 (984)
..+++||+++++++++.|......-+.++|++|+|||++|+...+++... ..+ +..+|.. +...+...
T Consensus 181 l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~-----~~~~l~a~--- 252 (731)
T TIGR02639 181 IDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL-----DMGSLLAG--- 252 (731)
T ss_pred CCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe-----cHHHHhhh---
Confidence 35789999999999999987655667799999999999999966665311 111 3344431 21111110
Q ss_pred HhccCccccchHHHHHHHHHHH-cCCcEEEEEECCCCcc----------chhhhccccCCCCc-EEEEEcCCccc-----
Q 001999 229 RLKVNAKELDNAQRADNISKEL-KDKRYVLFLDGVSSEI----------NFKEIGIHDDHGRG-KVVFACRSREF----- 291 (984)
Q Consensus 229 ~l~~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~~----------~~~~~~~~~~~~gs-~ilvTTR~~~v----- 291 (984)
.......++....+.+.+ +.++.+|++|++.... +...+..|.-.+|- ++|-+|...+.
T Consensus 253 ----~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g~i~~IgaTt~~e~~~~~~ 328 (731)
T TIGR02639 253 ----TKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSGKLRCIGSTTYEEYKNHFE 328 (731)
T ss_pred ----ccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCCCeEEEEecCHHHHHHHhh
Confidence 000001123333333333 3468999999986321 22233334323333 44544443221
Q ss_pred ---cc-cCCceEEccCCChHHHHHHHHHHhC
Q 001999 292 ---CW-QADDVIHVERLSPREAKKLFWEVVG 318 (984)
Q Consensus 292 ---~~-~~~~~~~l~~L~~~~~~~Lf~~~~~ 318 (984)
|- .....+.+++++.++..++++....
T Consensus 329 ~d~al~rRf~~i~v~~p~~~~~~~il~~~~~ 359 (731)
T TIGR02639 329 KDRALSRRFQKIDVGEPSIEETVKILKGLKE 359 (731)
T ss_pred hhHHHHHhCceEEeCCCCHHHHHHHHHHHHH
Confidence 11 4456899999999999999987653
No 146
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.41 E-value=0.0031 Score=62.26 Aligned_cols=100 Identities=18% Similarity=0.254 Sum_probs=64.5
Q ss_pred CCCCCchHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHhhhhcccCCCC-CeEEEEEeCCCCCHHHHHHHHHHHhc
Q 001999 153 ASKFPSHKEYVETLEKHLSSGGLKKICICGPLGVGKTTIMENSHDSVGESGRF-DIIFWVNVNTDGNISDIQEIILERLK 231 (984)
Q Consensus 153 ~~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F-~~~~wv~vs~~~~~~~i~~~i~~~l~ 231 (984)
..++||-++.++.+.-.-.+++.+-+.|.||+|+||||-+....+..-. ..+ +.+.-.+.|+...+.-+...|-.-..
T Consensus 26 l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG-~~~ke~vLELNASdeRGIDvVRn~IK~FAQ 104 (333)
T KOG0991|consen 26 LQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLG-DSYKEAVLELNASDERGIDVVRNKIKMFAQ 104 (333)
T ss_pred HHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhC-hhhhhHhhhccCccccccHHHHHHHHHHHH
Confidence 3578999999999988888889999999999999999998885544420 222 44555555555444333333322111
Q ss_pred cCccccchHHHHHHHHHHHcCCcEEEEEECCCCcc
Q 001999 232 VNAKELDNAQRADNISKELKDKRYVLFLDGVSSEI 266 (984)
Q Consensus 232 ~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~ 266 (984)
...... .|+.-++|||...+..
T Consensus 105 ~kv~lp-------------~grhKIiILDEADSMT 126 (333)
T KOG0991|consen 105 KKVTLP-------------PGRHKIIILDEADSMT 126 (333)
T ss_pred hhccCC-------------CCceeEEEeeccchhh
Confidence 110000 2566789999998753
No 147
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.41 E-value=0.0038 Score=71.23 Aligned_cols=152 Identities=12% Similarity=0.131 Sum_probs=90.6
Q ss_pred ccEEEEEcCCCChHHHHHHHhhhhcccCCCC--CeEEEEEeCCCCCHHHHHHHHHHHhccCccccchHHHHHHHHHHHcC
Q 001999 175 LKKICICGPLGVGKTTIMENSHDSVGESGRF--DIIFWVNVNTDGNISDIQEIILERLKVNAKELDNAQRADNISKELKD 252 (984)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F--~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~ 252 (984)
...+.|+|..|+|||+|++...+.+. ... ..+++++. .++...+..++... . ...+.+.+++
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~--~~~~~~~v~yi~~------~~~~~~~~~~~~~~----~----~~~~~~~~~~ 199 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEIL--ENNPNAKVVYVSS------EKFTNDFVNALRNN----K----MEEFKEKYRS 199 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHH--HhCCCCcEEEEEH------HHHHHHHHHHHHcC----C----HHHHHHHHHh
Confidence 45789999999999999999666654 222 23556643 33444555544321 1 1223333333
Q ss_pred CcEEEEEECCCCcc---chhhhccc----cCCCCcEEEEEcCCcc--c-------cc--cCCceEEccCCChHHHHHHHH
Q 001999 253 KRYVLFLDGVSSEI---NFKEIGIH----DDHGRGKVVFACRSRE--F-------CW--QADDVIHVERLSPREAKKLFW 314 (984)
Q Consensus 253 kr~LlVlDdv~~~~---~~~~~~~~----~~~~gs~ilvTTR~~~--v-------~~--~~~~~~~l~~L~~~~~~~Lf~ 314 (984)
.-+||+||+.... .+....+. -...|..+|+||.... + .. .....+.+++.+.++-..++.
T Consensus 200 -~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~ 278 (405)
T TIGR00362 200 -VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQ 278 (405)
T ss_pred -CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHH
Confidence 3488999997532 12211111 1123557888876421 1 11 334578999999999999999
Q ss_pred HHhCCCCCCCcchHHHHHHHHHHcCCCchHH
Q 001999 315 EVVGVNLKKNPDIEQEADSIVEECGGMPYML 345 (984)
Q Consensus 315 ~~~~~~~~~~~~l~~~~~~I~~~c~GlPlai 345 (984)
+.+.... ..--+++...|++.+.|..-.+
T Consensus 279 ~~~~~~~--~~l~~e~l~~ia~~~~~~~r~l 307 (405)
T TIGR00362 279 KKAEEEG--LELPDEVLEFIAKNIRSNVREL 307 (405)
T ss_pred HHHHHcC--CCCCHHHHHHHHHhcCCCHHHH
Confidence 8876541 1112567888888888866543
No 148
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.41 E-value=0.00012 Score=87.33 Aligned_cols=137 Identities=22% Similarity=0.176 Sum_probs=64.0
Q ss_pred CCccEEeccCCC-Cc-cCCcchh-cccccCeEecCCCcccc-cCchhhhccCCCcEEEecCccccccchhhhccCCCCee
Q 001999 544 CHLQLLDLHDTS-IR-CLPPSIS-RLINLNALFLRSCSLLF-QLPKEIRYLQKLEILDVRHTRIQCLPSEIGQLIKLKCL 619 (984)
Q Consensus 544 ~~Lr~L~L~~~~-i~-~lp~~i~-~l~~L~~L~L~~c~~l~-~lp~~i~~L~~L~~L~l~~~~l~~lp~~~~~L~~L~~L 619 (984)
.+|+.||++|.. +. .-|..++ .|++|+.|.+++-.... ++-.-..+++||..||+++|+++.+ .++++|++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 356666666642 22 2244444 45666666665521111 1112234556666666666666665 556666666666
Q ss_pred ecccccccCccccCCCCCCcccchhhhhccccccceeeeecCCchhHHhhhhhhhHHHhhccCCCceEEEecCCc
Q 001999 620 RVSWVENVGNHTHAGAWPGEMISSNIISKLCLLEELIIEVLDPSDRRWKQNVESIAGEIAALEQLTTLHFYFPTI 694 (984)
Q Consensus 620 ~l~~~~~~~~~~l~~~~~~~~ip~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 694 (984)
.+.+. .... ......+-+|++|+.|+++.-..... ........+.-..|++||.|+++.++.
T Consensus 201 ~mrnL-----e~e~------~~~l~~LF~L~~L~vLDIS~~~~~~~--~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 201 SMRNL-----EFES------YQDLIDLFNLKKLRVLDISRDKNNDD--TKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred hccCC-----CCCc------hhhHHHHhcccCCCeeeccccccccc--hHHHHHHHHhcccCccccEEecCCcch
Confidence 65511 1110 00111245566666666654221111 001112222333466777777765543
No 149
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.40 E-value=0.0072 Score=69.93 Aligned_cols=187 Identities=10% Similarity=0.087 Sum_probs=106.2
Q ss_pred HHHHHHHhcc--CCccEEEEEcCCCChHHHHHHHhhhhcccCCCC--CeEEEEEeCCCCCHHHHHHHHHHHhccCccccc
Q 001999 163 VETLEKHLSS--GGLKKICICGPLGVGKTTIMENSHDSVGESGRF--DIIFWVNVNTDGNISDIQEIILERLKVNAKELD 238 (984)
Q Consensus 163 ~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F--~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~ 238 (984)
......+... .....+.|+|..|+|||+|++.....+. ..+ -.+++++.. .+..++...+...
T Consensus 134 ~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~--~~~~~~~v~yi~~~------~~~~~~~~~~~~~----- 200 (450)
T PRK00149 134 HAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYIL--EKNPNAKVVYVTSE------KFTNDFVNALRNN----- 200 (450)
T ss_pred HHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHH--HhCCCCeEEEEEHH------HHHHHHHHHHHcC-----
Confidence 3444444433 2346789999999999999999666665 333 235566433 3344444444211
Q ss_pred hHHHHHHHHHHHcCCcEEEEEECCCCcc---ch-hhhc--c-ccCCCCcEEEEEcCCcc--c-------cc--cCCceEE
Q 001999 239 NAQRADNISKELKDKRYVLFLDGVSSEI---NF-KEIG--I-HDDHGRGKVVFACRSRE--F-------CW--QADDVIH 300 (984)
Q Consensus 239 ~~~~~~~l~~~L~~kr~LlVlDdv~~~~---~~-~~~~--~-~~~~~gs~ilvTTR~~~--v-------~~--~~~~~~~ 300 (984)
....+.+.++ +.-+||+||+.... .+ +.+. + .-...|..||+||.... + .. .....++
T Consensus 201 ---~~~~~~~~~~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~ 276 (450)
T PRK00149 201 ---TMEEFKEKYR-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVD 276 (450)
T ss_pred ---cHHHHHHHHh-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEE
Confidence 1123333444 34489999996431 12 1220 1 11223456888876532 1 11 4456899
Q ss_pred ccCCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCCchHHH----HHHHH---hhcCccHHHHHHHHHHh
Q 001999 301 VERLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGMPYMLK----LIGKE---LVNQSEVAIWRATVDDL 368 (984)
Q Consensus 301 l~~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~----~~~~~---l~~~~~~~~w~~~l~~l 368 (984)
+++.+.++-..++++.+.... ..--+++..-|++.+.|..-.+. .+..+ .....+.+..+.+++.+
T Consensus 277 i~~pd~~~r~~il~~~~~~~~--~~l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~~~ 349 (450)
T PRK00149 277 IEPPDLETRIAILKKKAEEEG--IDLPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKDL 349 (450)
T ss_pred ecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 999999999999999876431 11124578888888888765432 22211 11225566666666654
No 150
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.39 E-value=0.002 Score=73.91 Aligned_cols=153 Identities=16% Similarity=0.233 Sum_probs=88.3
Q ss_pred CCCCchHHHHHHHHHHhcc-------------CCccEEEEEcCCCChHHHHHHHhhhhcccCCC-----CCeEEEEEeCC
Q 001999 154 SKFPSHKEYVETLEKHLSS-------------GGLKKICICGPLGVGKTTIMENSHDSVGESGR-----FDIIFWVNVNT 215 (984)
Q Consensus 154 ~~~vgr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~-----F~~~~wv~vs~ 215 (984)
.++.|.+..+++|.+.+.- ...+-+.++|++|+|||++|+.+.+.+. .. +....|+.+..
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~--~~i~~~~~~~~~fl~v~~ 259 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLA--QRIGAETGDKSYFLNIKG 259 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhc--cccccccCCceeEEeccc
Confidence 4567899999888877531 2356789999999999999999777665 32 22344555443
Q ss_pred CCCHHHHHHHHHHHhccCccccch---HHHHHHHHHH-HcCCcEEEEEECCCCc---------cchh-----hh--ccc-
Q 001999 216 DGNISDIQEIILERLKVNAKELDN---AQRADNISKE-LKDKRYVLFLDGVSSE---------INFK-----EI--GIH- 274 (984)
Q Consensus 216 ~~~~~~i~~~i~~~l~~~~~~~~~---~~~~~~l~~~-L~~kr~LlVlDdv~~~---------~~~~-----~~--~~~- 274 (984)
. .+... . ..... ..+....++. -.+++++|++|+++.. .+.+ .+ .+.
T Consensus 260 ~----eLl~k----y----vGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDg 327 (512)
T TIGR03689 260 P----ELLNK----Y----VGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDG 327 (512)
T ss_pred h----hhccc----c----cchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcc
Confidence 1 11110 0 00000 1111122221 1357899999999642 1111 11 011
Q ss_pred -cCCCCcEEEEEcCCccccc-------cCCceEEccCCChHHHHHHHHHHhCCC
Q 001999 275 -DDHGRGKVVFACRSREFCW-------QADDVIHVERLSPREAKKLFWEVVGVN 320 (984)
Q Consensus 275 -~~~~gs~ilvTTR~~~v~~-------~~~~~~~l~~L~~~~~~~Lf~~~~~~~ 320 (984)
....+..||.||-...... .....++++..+.++..++|+++....
T Consensus 328 l~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~ 381 (512)
T TIGR03689 328 VESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDS 381 (512)
T ss_pred cccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhcc
Confidence 1123445555665443322 234579999999999999999987543
No 151
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.39 E-value=0.0061 Score=71.54 Aligned_cols=178 Identities=16% Similarity=0.174 Sum_probs=105.0
Q ss_pred cCCCCCCchHHHHHHHHHHhccCCcc-EEEEEcCCCChHHHHHHHhhhhcccC--------------------CCCCeEE
Q 001999 151 RHASKFPSHKEYVETLEKHLSSGGLK-KICICGPLGVGKTTIMENSHDSVGES--------------------GRFDIIF 209 (984)
Q Consensus 151 ~~~~~~vgr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~~~~~~~~~--------------------~~F~~~~ 209 (984)
..-.+++|-+..+..|..++..++.. .+-++|+.|+||||+|+...+.+--. .+++. +
T Consensus 13 ~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv-~ 91 (563)
T PRK06647 13 RDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDV-I 91 (563)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCe-E
Confidence 33467899999999999999876554 57899999999999999955544210 11221 1
Q ss_pred EEEeCCCCCHHHHHHHHHHHhccCccccchHHHHHHHH-HHHcCCcEEEEEECCCCcc--chhhh--ccccCCCCcEEEE
Q 001999 210 WVNVNTDGNISDIQEIILERLKVNAKELDNAQRADNIS-KELKDKRYVLFLDGVSSEI--NFKEI--GIHDDHGRGKVVF 284 (984)
Q Consensus 210 wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~-~~L~~kr~LlVlDdv~~~~--~~~~~--~~~~~~~gs~ilv 284 (984)
++.......+..+. ++ ...+. .-..+++-++|+|++.... .+..+ .+..-.....+|+
T Consensus 92 ~idgas~~~vddIr-~l----------------~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~ 154 (563)
T PRK06647 92 EIDGASNTSVQDVR-QI----------------KEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIF 154 (563)
T ss_pred EecCcccCCHHHHH-HH----------------HHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEE
Confidence 11111111111111 11 11111 1123667789999987643 33333 1222234455555
Q ss_pred Ec-CCccccc---cCCceEEccCCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCCchHHHHH
Q 001999 285 AC-RSREFCW---QADDVIHVERLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGMPYMLKLI 348 (984)
Q Consensus 285 TT-R~~~v~~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~~ 348 (984)
+| ....+.. .....+++.+++.++-...+.+.+.... .+--++.+..|++.++|.+-.+...
T Consensus 155 ~tte~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~eg--i~id~eAl~lLa~~s~GdlR~alsl 220 (563)
T PRK06647 155 ATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQ--IKYEDEALKWIAYKSTGSVRDAYTL 220 (563)
T ss_pred ecCChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 54 3334432 5566899999999999888887764331 1122457788999999988554443
No 152
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.38 E-value=0.0028 Score=65.61 Aligned_cols=180 Identities=14% Similarity=0.130 Sum_probs=112.4
Q ss_pred CCCCCCchHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEE-EEeCCCCCHHHHHHHHHHHh
Q 001999 152 HASKFPSHKEYVETLEKHLSSGGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFW-VNVNTDGNISDIQEIILERL 230 (984)
Q Consensus 152 ~~~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~w-v~vs~~~~~~~i~~~i~~~l 230 (984)
...+++|.+..+.-+.+.+.....+....+|++|.|||+-|......+--.+.|.+++- .++|+...+.-+-..+-. +
T Consensus 34 t~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~Kik~-f 112 (346)
T KOG0989|consen 34 TFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREKIKN-F 112 (346)
T ss_pred cHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhhhcC-H
Confidence 34678999999999999998878899999999999999999985555432366765543 455554322211111100 0
Q ss_pred ccCccccchHHHHHHHHHHH--cCCc-EEEEEECCCCc--cchhhhc--cccCCCCcEEEEEcCC-ccccc---cCCceE
Q 001999 231 KVNAKELDNAQRADNISKEL--KDKR-YVLFLDGVSSE--INFKEIG--IHDDHGRGKVVFACRS-REFCW---QADDVI 299 (984)
Q Consensus 231 ~~~~~~~~~~~~~~~l~~~L--~~kr-~LlVlDdv~~~--~~~~~~~--~~~~~~gs~ilvTTR~-~~v~~---~~~~~~ 299 (984)
+.+........ ..++ -.+|||++... +.|..+. +....+.++.++.|-. ..+.. .....+
T Consensus 113 ---------akl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~Kf 183 (346)
T KOG0989|consen 113 ---------AKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKF 183 (346)
T ss_pred ---------HHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHh
Confidence 00000000000 0123 48899999875 5677662 2244555565544433 33333 566789
Q ss_pred EccCCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCCch
Q 001999 300 HVERLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGMPY 343 (984)
Q Consensus 300 ~l~~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~GlPl 343 (984)
+.++|.+++..+-++..+..+. .+--.+..+.|++.++|.--
T Consensus 184 rFk~L~d~~iv~rL~~Ia~~E~--v~~d~~al~~I~~~S~GdLR 225 (346)
T KOG0989|consen 184 RFKKLKDEDIVDRLEKIASKEG--VDIDDDALKLIAKISDGDLR 225 (346)
T ss_pred cCCCcchHHHHHHHHHHHHHhC--CCCCHHHHHHHHHHcCCcHH
Confidence 9999999999999998887652 12224577889999998543
No 153
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.37 E-value=0.022 Score=61.92 Aligned_cols=191 Identities=13% Similarity=0.143 Sum_probs=107.4
Q ss_pred CCCCchHHHHHHHHHHhccCCc-cEEEEEcCCCChHHHHHHHhhhhcc-c------------CCCCCeEEEEEeCCCCCH
Q 001999 154 SKFPSHKEYVETLEKHLSSGGL-KKICICGPLGVGKTTIMENSHDSVG-E------------SGRFDIIFWVNVNTDGNI 219 (984)
Q Consensus 154 ~~~vgr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~~~~~~~-~------------~~~F~~~~wv~vs~~~~~ 219 (984)
.+++|.+..++.+...+..+++ ..+-++|+.|+||+++|......+- . .....-..|+.-....+-
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g 83 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQG 83 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccc
Confidence 4689999999999999988764 7999999999999999988433331 0 011222334421100000
Q ss_pred HHHHHHHHHHhccCccccch--HHHHHHHHHHHc-----CCcEEEEEECCCCccc--hhhh--ccccCCCCcEEEEEcCC
Q 001999 220 SDIQEIILERLKVNAKELDN--AQRADNISKELK-----DKRYVLFLDGVSSEIN--FKEI--GIHDDHGRGKVVFACRS 288 (984)
Q Consensus 220 ~~i~~~i~~~l~~~~~~~~~--~~~~~~l~~~L~-----~kr~LlVlDdv~~~~~--~~~~--~~~~~~~gs~ilvTTR~ 288 (984)
..+...-++..+........ -+.++.+.+.+. +++-++|+|++..... ...+ .+..-.+..=|++|+.-
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fILi~~~~ 163 (314)
T PRK07399 84 KLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNGTLILIAPSP 163 (314)
T ss_pred cccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEEEEECCh
Confidence 00111111111100000000 122344555543 5678999999876432 2222 11111133344445444
Q ss_pred ccccc---cCCceEEccCCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCCchHHHHHH
Q 001999 289 REFCW---QADDVIHVERLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGMPYMLKLIG 349 (984)
Q Consensus 289 ~~v~~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~~~ 349 (984)
+.+.. .....+++.++++++..+.+.+...... .......++..++|.|..+....
T Consensus 164 ~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~-----~~~~~~~l~~~a~Gs~~~al~~l 222 (314)
T PRK07399 164 ESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI-----LNINFPELLALAQGSPGAAIANI 222 (314)
T ss_pred HhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc-----chhHHHHHHHHcCCCHHHHHHHH
Confidence 44444 6778999999999999999988743221 11113578899999997655433
No 154
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.36 E-value=0.0049 Score=68.09 Aligned_cols=131 Identities=12% Similarity=0.120 Sum_probs=82.6
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHHHHHhccCccccchHHHHHHHHHHHcCC
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEIILERLKVNAKELDNAQRADNISKELKDK 253 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~k 253 (984)
....+.|+|..|.|||.|++.....+. ........+.++. .....+.+..+. +......++.. .
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~--~~~~~a~v~y~~s----e~f~~~~v~a~~--------~~~~~~Fk~~y--~ 175 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEAL--ANGPNARVVYLTS----EDFTNDFVKALR--------DNEMEKFKEKY--S 175 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHH--hhCCCceEEeccH----HHHHHHHHHHHH--------hhhHHHHHHhh--c
Confidence 478999999999999999999666665 4454333333322 233333333332 23345566666 4
Q ss_pred cEEEEEECCCCc---cchhhhccc----cCCCCcEEEEEcCCccc---------cc--cCCceEEccCCChHHHHHHHHH
Q 001999 254 RYVLFLDGVSSE---INFKEIGIH----DDHGRGKVVFACRSREF---------CW--QADDVIHVERLSPREAKKLFWE 315 (984)
Q Consensus 254 r~LlVlDdv~~~---~~~~~~~~~----~~~~gs~ilvTTR~~~v---------~~--~~~~~~~l~~L~~~~~~~Lf~~ 315 (984)
-=++++||++-. +.|++-.+. -...|-.||+|++...- .. ...-.+.+.+.+.+.....+.+
T Consensus 176 ~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~k 255 (408)
T COG0593 176 LDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRK 255 (408)
T ss_pred cCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHH
Confidence 458899999753 233332222 12334489999865321 11 5567899999999999999998
Q ss_pred HhCCC
Q 001999 316 VVGVN 320 (984)
Q Consensus 316 ~~~~~ 320 (984)
.+...
T Consensus 256 ka~~~ 260 (408)
T COG0593 256 KAEDR 260 (408)
T ss_pred HHHhc
Confidence 77554
No 155
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.36 E-value=0.0002 Score=52.27 Aligned_cols=32 Identities=44% Similarity=0.637 Sum_probs=13.8
Q ss_pred CccEEeccCCCCccCCcchhcccccCeEecCC
Q 001999 545 HLQLLDLHDTSIRCLPPSISRLINLNALFLRS 576 (984)
Q Consensus 545 ~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~ 576 (984)
+|++|++++|+|+.+|+.+++|++|++|++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~ 33 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSN 33 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecC
Confidence 34444444444444444444444444444444
No 156
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.34 E-value=0.0034 Score=67.43 Aligned_cols=150 Identities=13% Similarity=0.106 Sum_probs=78.5
Q ss_pred CCCchHHHHHHHHHHhc---c------------CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCH
Q 001999 155 KFPSHKEYVETLEKHLS---S------------GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNI 219 (984)
Q Consensus 155 ~~vgr~~~~~~l~~~L~---~------------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~ 219 (984)
+++|.++.+++|.++.. - ....-+.++|++|+||||+|+.+.+.+.........-|+.++.
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~---- 98 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR---- 98 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----
Confidence 36787766666544321 1 1123578999999999999987554443111111123444442
Q ss_pred HHHHHHHHHHhccCccccchHHHHHHHHHHHcCCcEEEEEECCCCc------cch-----hhh--ccccCCCCcEEEEEc
Q 001999 220 SDIQEIILERLKVNAKELDNAQRADNISKELKDKRYVLFLDGVSSE------INF-----KEI--GIHDDHGRGKVVFAC 286 (984)
Q Consensus 220 ~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~------~~~-----~~~--~~~~~~~gs~ilvTT 286 (984)
.++ ...+.... .......+.+ . ..-+|++|++... .+| ..+ .+.....+.+||+++
T Consensus 99 ~~l----~~~~~g~~----~~~~~~~~~~-a--~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~ 167 (284)
T TIGR02880 99 DDL----VGQYIGHT----APKTKEILKR-A--MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAG 167 (284)
T ss_pred HHH----hHhhcccc----hHHHHHHHHH-c--cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 122 22211111 1111222222 2 2358999998632 122 122 112333455666665
Q ss_pred CCccccc----------cCCceEEccCCChHHHHHHHHHHhCC
Q 001999 287 RSREFCW----------QADDVIHVERLSPREAKKLFWEVVGV 319 (984)
Q Consensus 287 R~~~v~~----------~~~~~~~l~~L~~~~~~~Lf~~~~~~ 319 (984)
-...... .....+++++++.+|-..++.+.+..
T Consensus 168 ~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~ 210 (284)
T TIGR02880 168 YKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKE 210 (284)
T ss_pred CcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHH
Confidence 4332211 33567999999999999998887643
No 157
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.34 E-value=0.00019 Score=52.37 Aligned_cols=41 Identities=20% Similarity=0.372 Sum_probs=34.8
Q ss_pred CceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCCc
Q 001999 520 CEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLPP 561 (984)
Q Consensus 520 ~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~ 561 (984)
++|++|++++|.++.+|.. ++++++|++|++++|.+++++.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~-l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPE-LSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGH-GTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCCCCcccCch-HhCCCCCCEEEecCCCCCCCcC
Confidence 4789999999999999886 8999999999999999987653
No 158
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.32 E-value=0.0043 Score=72.12 Aligned_cols=149 Identities=10% Similarity=0.134 Sum_probs=89.0
Q ss_pred ccEEEEEcCCCChHHHHHHHhhhhcccCCCC--CeEEEEEeCCCCCHHHHHHHHHHHhccCccccchHHHHHHHHHHHcC
Q 001999 175 LKKICICGPLGVGKTTIMENSHDSVGESGRF--DIIFWVNVNTDGNISDIQEIILERLKVNAKELDNAQRADNISKELKD 252 (984)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F--~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~ 252 (984)
...+.|+|..|+|||.|++...+.+. ..+ -.+++++ ..++..++...+... ....+++.++.
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~~a~--~~~~g~~V~Yit------aeef~~el~~al~~~--------~~~~f~~~y~~ 377 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGHYAR--RLYPGTRVRYVS------SEEFTNEFINSIRDG--------KGDSFRRRYRE 377 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHH--HhCCCCeEEEee------HHHHHHHHHHHHHhc--------cHHHHHHHhhc
Confidence 45689999999999999999666554 222 2345554 334444554443211 11223333333
Q ss_pred CcEEEEEECCCCc---cchhhhccc----cCCCCcEEEEEcCCc--c---c----cc--cCCceEEccCCChHHHHHHHH
Q 001999 253 KRYVLFLDGVSSE---INFKEIGIH----DDHGRGKVVFACRSR--E---F----CW--QADDVIHVERLSPREAKKLFW 314 (984)
Q Consensus 253 kr~LlVlDdv~~~---~~~~~~~~~----~~~~gs~ilvTTR~~--~---v----~~--~~~~~~~l~~L~~~~~~~Lf~ 314 (984)
-=+|||||+... ..|....+. -...|..|||||+.. . + .. ...-.+.+.+.+.+.-..+++
T Consensus 378 -~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~ 456 (617)
T PRK14086 378 -MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILR 456 (617)
T ss_pred -CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHH
Confidence 347889999653 223322122 223456788888763 1 1 11 557789999999999999999
Q ss_pred HHhCCCCCCCcchHHHHHHHHHHcCCCc
Q 001999 315 EVVGVNLKKNPDIEQEADSIVEECGGMP 342 (984)
Q Consensus 315 ~~~~~~~~~~~~l~~~~~~I~~~c~GlP 342 (984)
+++.... ..--+++.+-|++.+.+..
T Consensus 457 kka~~r~--l~l~~eVi~yLa~r~~rnv 482 (617)
T PRK14086 457 KKAVQEQ--LNAPPEVLEFIASRISRNI 482 (617)
T ss_pred HHHHhcC--CCCCHHHHHHHHHhccCCH
Confidence 8876541 1112456777777766543
No 159
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.32 E-value=0.0042 Score=71.09 Aligned_cols=163 Identities=16% Similarity=0.225 Sum_probs=95.4
Q ss_pred HHHHHhcc-CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCC-eEEEEEeCCCCCHHHHHHHHHHHhccCccccchHHH
Q 001999 165 TLEKHLSS-GGLKKICICGPLGVGKTTIMENSHDSVGESGRFD-IIFWVNVNTDGNISDIQEIILERLKVNAKELDNAQR 242 (984)
Q Consensus 165 ~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~-~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~ 242 (984)
...++... +....+.|+|..|+|||+|++...+.+.. .+.+ .++|++. .++..++...+....
T Consensus 119 ~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~-~~~~~~v~yi~~------~~f~~~~~~~~~~~~-------- 183 (440)
T PRK14088 119 AALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQ-NEPDLRVMYITS------EKFLNDLVDSMKEGK-------- 183 (440)
T ss_pred HHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHHH-hCCCCeEEEEEH------HHHHHHHHHHHhccc--------
Confidence 34444433 23456999999999999999996666541 2222 4566653 345566655553211
Q ss_pred HHHHHHHHcCCcEEEEEECCCCcc---ch-hhh--ccc-cCCCCcEEEEEcCCc-c----ccc------cCCceEEccCC
Q 001999 243 ADNISKELKDKRYVLFLDGVSSEI---NF-KEI--GIH-DDHGRGKVVFACRSR-E----FCW------QADDVIHVERL 304 (984)
Q Consensus 243 ~~~l~~~L~~kr~LlVlDdv~~~~---~~-~~~--~~~-~~~~gs~ilvTTR~~-~----v~~------~~~~~~~l~~L 304 (984)
...+.+.+..+.-+|++||+.... .+ +.+ .+. -...|..||+||... . +.. .....+++++.
T Consensus 184 ~~~f~~~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~p 263 (440)
T PRK14088 184 LNEFREKYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPP 263 (440)
T ss_pred HHHHHHHHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCC
Confidence 122333444456689999997431 11 111 111 122345788888532 1 111 34568889999
Q ss_pred ChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCCchH
Q 001999 305 SPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGMPYM 344 (984)
Q Consensus 305 ~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~GlPla 344 (984)
+.++-..++++.+.... ..--+++...|++.+.|.--.
T Consensus 264 d~e~r~~IL~~~~~~~~--~~l~~ev~~~Ia~~~~~~~R~ 301 (440)
T PRK14088 264 DEETRKKIARKMLEIEH--GELPEEVLNFVAENVDDNLRR 301 (440)
T ss_pred CHHHHHHHHHHHHHhcC--CCCCHHHHHHHHhccccCHHH
Confidence 99999999988876431 111245778888887775433
No 160
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.30 E-value=1.4e-05 Score=90.45 Aligned_cols=128 Identities=20% Similarity=0.177 Sum_probs=97.1
Q ss_pred CCChhhhccCeEeeeccCCCCCCCC-CCCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCCc-chhcccc
Q 001999 491 HISEEEWKDTKKLSLFGFPSSTLPD-MPNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLPP-SISRLIN 568 (984)
Q Consensus 491 ~~~~~~~~~~r~l~l~~~~~~~l~~-~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~ 568 (984)
..+...|.++..++...|.+..+.. +.-++.|+.|+|+.|.+.++. ++..+++|+.|||+.|.+..+|. +...+.
T Consensus 157 ~~ns~~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~- 233 (1096)
T KOG1859|consen 157 ISNSPVWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK- 233 (1096)
T ss_pred cccchhhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-
Confidence 3445567778778877776654332 244688999999999998876 38899999999999999998876 334554
Q ss_pred cCeEecCCCcccccCchhhhccCCCcEEEecCccccccc--hhhhccCCCCeeeccc
Q 001999 569 LNALFLRSCSLLFQLPKEIRYLQKLEILDVRHTRIQCLP--SEIGQLIKLKCLRVSW 623 (984)
Q Consensus 569 L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp--~~~~~L~~L~~L~l~~ 623 (984)
|+.|.|++| .++.+ ..+.+|.+|+.||+++|-+...- .-++.|..|+.|++.+
T Consensus 234 L~~L~lrnN-~l~tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeG 288 (1096)
T KOG1859|consen 234 LQLLNLRNN-ALTTL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEG 288 (1096)
T ss_pred heeeeeccc-HHHhh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcC
Confidence 999999985 46666 46899999999999999666322 2367788888898883
No 161
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.29 E-value=0.0059 Score=74.62 Aligned_cols=153 Identities=14% Similarity=0.142 Sum_probs=88.6
Q ss_pred CCCCchHHHHHHHHHHhcc------CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHHH
Q 001999 154 SKFPSHKEYVETLEKHLSS------GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEIIL 227 (984)
Q Consensus 154 ~~~vgr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~ 227 (984)
.+.+|.++.++.|+++|.. ....++.++|++|+||||+|+....... ..|-. +..+...+...+...-.
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~--~~~~~---i~~~~~~d~~~i~g~~~ 396 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATG--RKYVR---MALGGVRDEAEIRGHRR 396 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhC--CCEEE---EEcCCCCCHHHhccchh
Confidence 4579999999999998863 3567899999999999999999777665 44422 33333334332221111
Q ss_pred HHhccCccccchHHHHHHHHHHHcCCcEEEEEECCCCccc-h-----hhh---cc--------------ccCCCCcEEEE
Q 001999 228 ERLKVNAKELDNAQRADNISKELKDKRYVLFLDGVSSEIN-F-----KEI---GI--------------HDDHGRGKVVF 284 (984)
Q Consensus 228 ~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~-~-----~~~---~~--------------~~~~~gs~ilv 284 (984)
...+. ........+.+ .....-+++||.+..... . ..+ .- +..-.+.-+|.
T Consensus 397 ~~~g~-----~~G~~~~~l~~-~~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~ 470 (784)
T PRK10787 397 TYIGS-----MPGKLIQKMAK-VGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVA 470 (784)
T ss_pred ccCCC-----CCcHHHHHHHh-cCCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEE
Confidence 11110 01222223322 122445789999864311 0 111 01 11113334455
Q ss_pred EcCCccccc---cCCceEEccCCChHHHHHHHHHHh
Q 001999 285 ACRSREFCW---QADDVIHVERLSPREAKKLFWEVV 317 (984)
Q Consensus 285 TTR~~~v~~---~~~~~~~l~~L~~~~~~~Lf~~~~ 317 (984)
||.+..+.. .-...+.+.+++.++-.++.+++.
T Consensus 471 TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 471 TSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred cCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 665554433 555788999999998888887764
No 162
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.28 E-value=0.00034 Score=67.68 Aligned_cols=78 Identities=19% Similarity=0.259 Sum_probs=45.4
Q ss_pred CeEeeeccCCCCCCCCCCCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCC--cchhcccccCeEecCCC
Q 001999 500 TKKLSLFGFPSSTLPDMPNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLP--PSISRLINLNALFLRSC 577 (984)
Q Consensus 500 ~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp--~~i~~l~~L~~L~L~~c 577 (984)
...+.+.+|.+..++.++.+++|.+|.+.+|.+..+.+..-.-+++|.+|.|.+|.|..+- ..+..|+.|++|.+-+|
T Consensus 44 ~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~N 123 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGN 123 (233)
T ss_pred cceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCC
Confidence 3345566666666666666666666666666666665554444556666666666655441 22444555555555553
No 163
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.26 E-value=7.4e-05 Score=67.37 Aligned_cols=89 Identities=22% Similarity=0.301 Sum_probs=61.3
Q ss_pred CceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCCcchhcccccCeEecCCCcccccCchhhhccCCCcEEEec
Q 001999 520 CEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLPPSISRLINLNALFLRSCSLLFQLPKEIRYLQKLEILDVR 599 (984)
Q Consensus 520 ~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~ 599 (984)
..|...++++|.+.++|+.+-..++.+..|+|++|.|.++|..+..++.||.|+++.|. +...|..+..|.+|-.|+..
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~-l~~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNP-LNAEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCc-cccchHHHHHHHhHHHhcCC
Confidence 44566666677777777776666667777777777777777777777777777777743 55666666667777777777
Q ss_pred Cccccccchh
Q 001999 600 HTRIQCLPSE 609 (984)
Q Consensus 600 ~~~l~~lp~~ 609 (984)
++.+..+|-.
T Consensus 132 ~na~~eid~d 141 (177)
T KOG4579|consen 132 ENARAEIDVD 141 (177)
T ss_pred CCccccCcHH
Confidence 7666666654
No 164
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.26 E-value=0.011 Score=70.29 Aligned_cols=192 Identities=10% Similarity=0.069 Sum_probs=105.2
Q ss_pred CCCCCCchHHHHHHHHHHhccCCc-cEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 001999 152 HASKFPSHKEYVETLEKHLSSGGL-KKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEIILERL 230 (984)
Q Consensus 152 ~~~~~vgr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l 230 (984)
.-.+++|.+..+..|..++..++. ..+-++|+.|+||||+|+...+.+--...... ....+..-...+.|....
T Consensus 14 ~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~-----~~~~Cg~C~~C~~i~~g~ 88 (620)
T PRK14948 14 RFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKP-----TPEPCGKCELCRAIAAGN 88 (620)
T ss_pred cHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCC-----CCCCCcccHHHHHHhcCC
Confidence 346789999999999999987653 67789999999999999996555431010000 000111111122221111
Q ss_pred ccCc-----cccchHHHHHHHHHHH-----cCCcEEEEEECCCCcc--chhhh--ccccCCCCcEEEE-EcCCccccc--
Q 001999 231 KVNA-----KELDNAQRADNISKEL-----KDKRYVLFLDGVSSEI--NFKEI--GIHDDHGRGKVVF-ACRSREFCW-- 293 (984)
Q Consensus 231 ~~~~-----~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~~--~~~~~--~~~~~~~gs~ilv-TTR~~~v~~-- 293 (984)
..+. .....-+.++.+.+.+ .+++-++|+|++.... .+..+ .+..-.....+|+ |+....+..
T Consensus 89 h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTI 168 (620)
T PRK14948 89 ALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTI 168 (620)
T ss_pred CccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHH
Confidence 1000 0000011111111211 3566789999998643 33333 1112223344444 443333332
Q ss_pred -cCCceEEccCCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCCchHHHHHHH
Q 001999 294 -QADDVIHVERLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGMPYMLKLIGK 350 (984)
Q Consensus 294 -~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~~~~ 350 (984)
.....+++..++.++....+.+.+...... --.+.+..|++.++|.+..+.....
T Consensus 169 rSRc~~~~f~~l~~~ei~~~L~~ia~kegi~--is~~al~~La~~s~G~lr~A~~lLe 224 (620)
T PRK14948 169 ISRCQRFDFRRIPLEAMVQHLSEIAEKESIE--IEPEALTLVAQRSQGGLRDAESLLD 224 (620)
T ss_pred HhheeEEEecCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 556788999999999888887766543111 1134678899999998865544433
No 165
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.19 E-value=0.015 Score=68.69 Aligned_cols=186 Identities=13% Similarity=0.104 Sum_probs=102.3
Q ss_pred CCCCCCchHHHHHHHHHHhccCC-ccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 001999 152 HASKFPSHKEYVETLEKHLSSGG-LKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEIILERL 230 (984)
Q Consensus 152 ~~~~~vgr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l 230 (984)
.-.+++|.+..++.+.+++..++ ...+-++|+.|+||||+|+...+.+--...-+ ...++.-...+.|....
T Consensus 14 ~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~-------~~pC~~C~~C~~i~~g~ 86 (559)
T PRK05563 14 TFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD-------GEPCNECEICKAITNGS 86 (559)
T ss_pred cHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCccHHHHHHhcCC
Confidence 44678999999999999998754 44567899999999999998544432001000 00111111111111100
Q ss_pred ccCc---cccc--hHHHHHHHHHH-----HcCCcEEEEEECCCCcc--chhhh--ccccCCCCcEEE-EEcCCccccc--
Q 001999 231 KVNA---KELD--NAQRADNISKE-----LKDKRYVLFLDGVSSEI--NFKEI--GIHDDHGRGKVV-FACRSREFCW-- 293 (984)
Q Consensus 231 ~~~~---~~~~--~~~~~~~l~~~-----L~~kr~LlVlDdv~~~~--~~~~~--~~~~~~~gs~il-vTTR~~~v~~-- 293 (984)
..+. +..+ .-+.+..+.+. ..+++-++|+|++.... .+..+ .+..-.....+| .||....+..
T Consensus 87 ~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI 166 (559)
T PRK05563 87 LMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATI 166 (559)
T ss_pred CCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHH
Confidence 0000 0000 01111222222 13567789999997542 33333 111222233444 4554444443
Q ss_pred -cCCceEEccCCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCCchHHH
Q 001999 294 -QADDVIHVERLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGMPYMLK 346 (984)
Q Consensus 294 -~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~ 346 (984)
.....+++.+++.++....+...+.... ..--.+....|++.++|.+..+.
T Consensus 167 ~SRc~~~~f~~~~~~ei~~~L~~i~~~eg--i~i~~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 167 LSRCQRFDFKRISVEDIVERLKYILDKEG--IEYEDEALRLIARAAEGGMRDAL 218 (559)
T ss_pred HhHheEEecCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHH
Confidence 4567899999999999888888765431 11124567888999999875443
No 166
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.19 E-value=0.0019 Score=66.19 Aligned_cols=35 Identities=31% Similarity=0.523 Sum_probs=28.3
Q ss_pred EEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEe
Q 001999 177 KICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNV 213 (984)
Q Consensus 177 vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~v 213 (984)
.++|+|..|+||||++...-.... ..|..+++++-
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~--~~f~~I~l~t~ 49 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLR--HKFDHIFLITP 49 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhc--ccCCEEEEEec
Confidence 678999999999999999555566 78977777754
No 167
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.16 E-value=0.015 Score=59.19 Aligned_cols=48 Identities=13% Similarity=0.196 Sum_probs=36.4
Q ss_pred CCCCCCchHHHHHHHHHHh----ccCCccEEEEEcCCCChHHHHHHHhhhhc
Q 001999 152 HASKFPSHKEYVETLEKHL----SSGGLKKICICGPLGVGKTTIMENSHDSV 199 (984)
Q Consensus 152 ~~~~~vgr~~~~~~l~~~L----~~~~~~vi~I~G~gGiGKTtLa~~~~~~~ 199 (984)
+.++++|.+..++.|++-. ......-+-++|..|.|||++++..-...
T Consensus 25 ~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y 76 (249)
T PF05673_consen 25 RLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEY 76 (249)
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHH
Confidence 4466899999998887543 33455667789999999999999944443
No 168
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.16 E-value=0.0063 Score=75.88 Aligned_cols=154 Identities=12% Similarity=0.127 Sum_probs=89.1
Q ss_pred CCCCCchHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHhhhhcccCCC----CCeEEEEEeCCCCCHHHHHHHHHH
Q 001999 153 ASKFPSHKEYVETLEKHLSSGGLKKICICGPLGVGKTTIMENSHDSVGESGR----FDIIFWVNVNTDGNISDIQEIILE 228 (984)
Q Consensus 153 ~~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~----F~~~~wv~vs~~~~~~~i~~~i~~ 228 (984)
...++||++++.++++.|......-+.++|++|+|||++|+....++..... .+..+|.. +...+..
T Consensus 172 ~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l-----~~~~l~a---- 242 (852)
T TIGR03346 172 LDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL-----DMGALIA---- 242 (852)
T ss_pred CCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe-----eHHHHhh----
Confidence 3568999999999999998765566678999999999999996666531110 12333331 1111110
Q ss_pred HhccCccccchHHHHHHHHHHHc--CCcEEEEEECCCCcc---------chhhhccccCCCC-cEEEEEcCCccc-----
Q 001999 229 RLKVNAKELDNAQRADNISKELK--DKRYVLFLDGVSSEI---------NFKEIGIHDDHGR-GKVVFACRSREF----- 291 (984)
Q Consensus 229 ~l~~~~~~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~~---------~~~~~~~~~~~~g-s~ilvTTR~~~v----- 291 (984)
+ .......+.....+.+.+. +++.+|++|++.... +...+..|...+| -++|-+|.....
T Consensus 243 --~-~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g~i~~IgaTt~~e~r~~~~ 319 (852)
T TIGR03346 243 --G-AKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGELHCIGATTLDEYRKYIE 319 (852)
T ss_pred --c-chhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcCceEEEEeCcHHHHHHHhh
Confidence 0 0000011222333333332 468999999986431 1223333422333 345544443322
Q ss_pred ---cc-cCCceEEccCCChHHHHHHHHHHhC
Q 001999 292 ---CW-QADDVIHVERLSPREAKKLFWEVVG 318 (984)
Q Consensus 292 ---~~-~~~~~~~l~~L~~~~~~~Lf~~~~~ 318 (984)
+- .....+.+...+.++...+++....
T Consensus 320 ~d~al~rRf~~i~v~~p~~~~~~~iL~~~~~ 350 (852)
T TIGR03346 320 KDAALERRFQPVFVDEPTVEDTISILRGLKE 350 (852)
T ss_pred cCHHHHhcCCEEEeCCCCHHHHHHHHHHHHH
Confidence 11 4456788999999999999876643
No 169
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.15 E-value=0.0089 Score=70.85 Aligned_cols=169 Identities=11% Similarity=0.182 Sum_probs=100.4
Q ss_pred cCCCCCCchHHHHHHHHHHhccCCcc-EEEEEcCCCChHHHHHHHhhhhcccCC--------------------CCCeEE
Q 001999 151 RHASKFPSHKEYVETLEKHLSSGGLK-KICICGPLGVGKTTIMENSHDSVGESG--------------------RFDIIF 209 (984)
Q Consensus 151 ~~~~~~vgr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~~~~~~~~~~--------------------~F~~~~ 209 (984)
..-.+++|.++.+..|.+++..+++. .+-++|+.|+||||+|+...+.+--.. +++. +
T Consensus 13 ~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~-~ 91 (576)
T PRK14965 13 QTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDV-F 91 (576)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCe-e
Confidence 34467899999999999999876654 568999999999999998544432001 1111 1
Q ss_pred EEEeCCCCCHHHHHHHHHHHhccCccccchHHHHHHHHHHH-----cCCcEEEEEECCCCcc--chhhh--ccccCCCCc
Q 001999 210 WVNVNTDGNISDIQEIILERLKVNAKELDNAQRADNISKEL-----KDKRYVLFLDGVSSEI--NFKEI--GIHDDHGRG 280 (984)
Q Consensus 210 wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~~--~~~~~--~~~~~~~gs 280 (984)
.+.......+.. +..+.+.+ .+++-++|+|++.... ....+ .+..-....
T Consensus 92 eid~~s~~~v~~---------------------ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~ 150 (576)
T PRK14965 92 EIDGASNTGVDD---------------------IRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHV 150 (576)
T ss_pred eeeccCccCHHH---------------------HHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCe
Confidence 111111111111 11222222 3556689999997643 22222 111222345
Q ss_pred EEE-EEcCCccccc---cCCceEEccCCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCCch
Q 001999 281 KVV-FACRSREFCW---QADDVIHVERLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGMPY 343 (984)
Q Consensus 281 ~il-vTTR~~~v~~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~GlPl 343 (984)
.+| +||....+.. .....+++.+++.++....+...+.... ..--.+....|++.++|..-
T Consensus 151 ~fIl~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~eg--i~i~~~al~~la~~a~G~lr 215 (576)
T PRK14965 151 KFIFATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEG--ISISDAALALVARKGDGSMR 215 (576)
T ss_pred EEEEEeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhC--CCCCHHHHHHHHHHcCCCHH
Confidence 555 4555555543 5567899999999998888877654331 11124567789999998764
No 170
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.15 E-value=0.00013 Score=76.36 Aligned_cols=184 Identities=14% Similarity=0.133 Sum_probs=106.8
Q ss_pred cCeEeeeccCCCCC--CCC----CCCcCceeEEEecCcccCCCcchH-------------hhcCCCccEEeccCCCCccC
Q 001999 499 DTKKLSLFGFPSST--LPD----MPNCCEILTLIVEGRRLEKLPMSF-------------FEYMCHLQLLDLHDTSIRCL 559 (984)
Q Consensus 499 ~~r~l~l~~~~~~~--l~~----~~~~~~L~~L~l~~~~l~~l~~~~-------------~~~l~~Lr~L~L~~~~i~~l 559 (984)
+++.+.+++|-+.. ++. +.++..|+.|.+.+|.+....-.. ..+-+.|||+..+.|.+..-
T Consensus 93 ~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ 172 (382)
T KOG1909|consen 93 KLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENG 172 (382)
T ss_pred ceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccc
Confidence 56667777765542 221 145677777777777664322211 22345788888877766533
Q ss_pred -----CcchhcccccCeEecCCCcccc----cCchhhhccCCCcEEEecCcccc-----ccchhhhccCCCCeeeccccc
Q 001999 560 -----PPSISRLINLNALFLRSCSLLF----QLPKEIRYLQKLEILDVRHTRIQ-----CLPSEIGQLIKLKCLRVSWVE 625 (984)
Q Consensus 560 -----p~~i~~l~~L~~L~L~~c~~l~----~lp~~i~~L~~L~~L~l~~~~l~-----~lp~~~~~L~~L~~L~l~~~~ 625 (984)
-..+...+.|+.+.+..|..-. -+...+.++++|++||++.|-++ .+...+..++.|+.|+++
T Consensus 173 ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~--- 249 (382)
T KOG1909|consen 173 GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG--- 249 (382)
T ss_pred cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc---
Confidence 2345556677777777654222 12335677888888888888665 344456667788888887
Q ss_pred ccCccccCCCCCCc-ccchhhhhccccccceeeeecCCchhHHhhhhhhhHHHhhccCCCceEEEecCCc
Q 001999 626 NVGNHTHAGAWPGE-MISSNIISKLCLLEELIIEVLDPSDRRWKQNVESIAGEIAALEQLTTLHFYFPTI 694 (984)
Q Consensus 626 ~~~~~~l~~~~~~~-~ip~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 694 (984)
.|..... |. .+-...-...++|+.|.+.+.+.... ....+...+..++.|..|.|+.+..
T Consensus 250 --dcll~~~---Ga~a~~~al~~~~p~L~vl~l~gNeIt~d----a~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 250 --DCLLENE---GAIAFVDALKESAPSLEVLELAGNEITRD----AALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred --ccccccc---cHHHHHHHHhccCCCCceeccCcchhHHH----HHHHHHHHHhcchhhHHhcCCcccc
Confidence 3332220 00 11112123467788887776444321 1334445566688888888887765
No 171
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.14 E-value=0.0022 Score=77.56 Aligned_cols=152 Identities=17% Similarity=0.157 Sum_probs=88.5
Q ss_pred CCCCchHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHhhhhcccC-CC---CCeEEEEEeCCCCCHHHHHHHHHHH
Q 001999 154 SKFPSHKEYVETLEKHLSSGGLKKICICGPLGVGKTTIMENSHDSVGES-GR---FDIIFWVNVNTDGNISDIQEIILER 229 (984)
Q Consensus 154 ~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~-~~---F~~~~wv~vs~~~~~~~i~~~i~~~ 229 (984)
..++||++++.++++.|......-+.++|++|+|||++|+....++... .. .++.+|.. +...++.
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~lla----- 255 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSLLA----- 255 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHHhc-----
Confidence 4689999999999998887544555689999999999999966554211 11 14455531 2211110
Q ss_pred hccCccccchHHHHHHHHHHH-cCCcEEEEEECCCCc----------cchhhhccccCCCC-cEEEEEcCCccc----c-
Q 001999 230 LKVNAKELDNAQRADNISKEL-KDKRYVLFLDGVSSE----------INFKEIGIHDDHGR-GKVVFACRSREF----C- 292 (984)
Q Consensus 230 l~~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~----------~~~~~~~~~~~~~g-s~ilvTTR~~~v----~- 292 (984)
+ .......+.....+.+.+ +.+..+|++|++... .+...+..|-..+| -+||-+|..... .
T Consensus 256 -G-~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i~vIgATt~~E~~~~~~~ 333 (758)
T PRK11034 256 -G-TKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEK 333 (758)
T ss_pred -c-cchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCeEEEecCChHHHHHHhhc
Confidence 0 000001123333333333 356789999999632 12222223322223 345545544332 1
Q ss_pred ---c-cCCceEEccCCChHHHHHHHHHHh
Q 001999 293 ---W-QADDVIHVERLSPREAKKLFWEVV 317 (984)
Q Consensus 293 ---~-~~~~~~~l~~L~~~~~~~Lf~~~~ 317 (984)
- .-...+.+++.+.++..++++...
T Consensus 334 D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 334 DRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred cHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 1 444689999999999999998754
No 172
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.13 E-value=0.004 Score=77.28 Aligned_cols=152 Identities=13% Similarity=0.113 Sum_probs=86.6
Q ss_pred CCCCCchHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHhhhhcccCC---C-CCeEE-EEEeCCCCCHHHHHHHHH
Q 001999 153 ASKFPSHKEYVETLEKHLSSGGLKKICICGPLGVGKTTIMENSHDSVGESG---R-FDIIF-WVNVNTDGNISDIQEIIL 227 (984)
Q Consensus 153 ~~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~---~-F~~~~-wv~vs~~~~~~~i~~~i~ 227 (984)
...++||++++.++++.|......-+.++|.+|+|||++|+....++.... . .+..+ ++.++. +...
T Consensus 177 l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~------l~ag-- 248 (857)
T PRK10865 177 LDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------LVAG-- 248 (857)
T ss_pred CCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhh------hhhc--
Confidence 356899999999999999876666677999999999999999666653111 0 12233 332222 1100
Q ss_pred HHhccCccccchHHHHHHHHHHH--cCCcEEEEEECCCCcc---------chhhhccccCCCC-cEEEEEcCCccc----
Q 001999 228 ERLKVNAKELDNAQRADNISKEL--KDKRYVLFLDGVSSEI---------NFKEIGIHDDHGR-GKVVFACRSREF---- 291 (984)
Q Consensus 228 ~~l~~~~~~~~~~~~~~~l~~~L--~~kr~LlVlDdv~~~~---------~~~~~~~~~~~~g-s~ilvTTR~~~v---- 291 (984)
......-+.....+.+.+ .+++.+|++|++.... +...+..|.-.+| -++|-||.....
T Consensus 249 -----~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g~l~~IgaTt~~e~r~~~ 323 (857)
T PRK10865 249 -----AKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQYI 323 (857)
T ss_pred -----cchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcCCCeEEEcCCCHHHHHHh
Confidence 000000122222222222 2578999999986432 2233344533333 355555444332
Q ss_pred ----cc-cCCceEEccCCChHHHHHHHHHHh
Q 001999 292 ----CW-QADDVIHVERLSPREAKKLFWEVV 317 (984)
Q Consensus 292 ----~~-~~~~~~~l~~L~~~~~~~Lf~~~~ 317 (984)
|. .....+.+..-+.++...+++...
T Consensus 324 ~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 324 EKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred hhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 11 334466677778899998887654
No 173
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.12 E-value=0.02 Score=65.52 Aligned_cols=147 Identities=14% Similarity=0.151 Sum_probs=85.1
Q ss_pred ccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHHHHHhccCccccchHHHHHHHHHHHcCCc
Q 001999 175 LKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEIILERLKVNAKELDNAQRADNISKELKDKR 254 (984)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~kr 254 (984)
...+.|+|+.|+|||+|++.....+. ..-..+++++ ...+...+...+... ....+++.++ +.
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~--~~~~~v~yi~------~~~f~~~~~~~l~~~--------~~~~f~~~~~-~~ 203 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALR--ESGGKILYVR------SELFTEHLVSAIRSG--------EMQRFRQFYR-NV 203 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHH--HcCCCEEEee------HHHHHHHHHHHHhcc--------hHHHHHHHcc-cC
Confidence 46788999999999999999666554 2223345554 234444555554321 1122333333 34
Q ss_pred EEEEEECCCCccc--h--hhhc--cc-cCCCCcEEEEEcCCc-c----ccc------cCCceEEccCCChHHHHHHHHHH
Q 001999 255 YVLFLDGVSSEIN--F--KEIG--IH-DDHGRGKVVFACRSR-E----FCW------QADDVIHVERLSPREAKKLFWEV 316 (984)
Q Consensus 255 ~LlVlDdv~~~~~--~--~~~~--~~-~~~~gs~ilvTTR~~-~----v~~------~~~~~~~l~~L~~~~~~~Lf~~~ 316 (984)
-+|++||+..... + +.+. +. -...|..||+||... . +.. .....+.+.+++.++-..++++.
T Consensus 204 dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k 283 (445)
T PRK12422 204 DALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERK 283 (445)
T ss_pred CEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHH
Confidence 5888899865321 1 1110 10 112356788888542 1 111 44578999999999999999887
Q ss_pred hCCCCCCCcchHHHHHHHHHHcCC
Q 001999 317 VGVNLKKNPDIEQEADSIVEECGG 340 (984)
Q Consensus 317 ~~~~~~~~~~l~~~~~~I~~~c~G 340 (984)
+.... ..--+++..-|++.+.|
T Consensus 284 ~~~~~--~~l~~evl~~la~~~~~ 305 (445)
T PRK12422 284 AEALS--IRIEETALDFLIEALSS 305 (445)
T ss_pred HHHcC--CCCCHHHHHHHHHhcCC
Confidence 75431 11113456666666654
No 174
>PRK08116 hypothetical protein; Validated
Probab=97.10 E-value=0.0025 Score=67.69 Aligned_cols=100 Identities=14% Similarity=0.199 Sum_probs=58.3
Q ss_pred ccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHHHHHhccCccccchHHHHHHHHHHHcCCc
Q 001999 175 LKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEIILERLKVNAKELDNAQRADNISKELKDKR 254 (984)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~kr 254 (984)
...+.++|..|+|||.||.+..+.+. .+-..+++++ ..+++..|........ ......+.+.+.+-.
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~--~~~~~v~~~~------~~~ll~~i~~~~~~~~-----~~~~~~~~~~l~~~d 180 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELI--EKGVPVIFVN------FPQLLNRIKSTYKSSG-----KEDENEIIRSLVNAD 180 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEEE------HHHHHHHHHHHHhccc-----cccHHHHHHHhcCCC
Confidence 34688999999999999999666654 3333456664 3445666655543221 111222334444444
Q ss_pred EEEEEECCCC--ccchhhh-ccc----cCCCCcEEEEEcCC
Q 001999 255 YVLFLDGVSS--EINFKEI-GIH----DDHGRGKVVFACRS 288 (984)
Q Consensus 255 ~LlVlDdv~~--~~~~~~~-~~~----~~~~gs~ilvTTR~ 288 (984)
||||||+.. ..+|..- .+. --..|..+||||..
T Consensus 181 -lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 181 -LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred -EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 899999943 3455331 111 12345679999853
No 175
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.10 E-value=0.0002 Score=84.40 Aligned_cols=36 Identities=25% Similarity=0.530 Sum_probs=15.8
Q ss_pred cceeeecccccccccCcHHHHhh-cccccEEeecccch
Q 001999 848 LRTLRVKICHSIKTLFSKEMVAQ-LNELQDLQVEDCQM 884 (984)
Q Consensus 848 L~~L~l~~c~~L~~l~~~~~l~~-l~~L~~L~l~~c~~ 884 (984)
|+.|.+..|...+.. ....... +.+++.+++.+|..
T Consensus 403 l~~L~l~~~~~~t~~-~l~~~~~~~~~~~~l~~~~~~~ 439 (482)
T KOG1947|consen 403 LRVLNLSDCRLVTDK-GLRCLADSCSNLKDLDLSGCRV 439 (482)
T ss_pred cceEecccCcccccc-chHHHhhhhhccccCCccCccc
Confidence 566666666444333 1111111 44445555554444
No 176
>PRK10536 hypothetical protein; Provisional
Probab=97.08 E-value=0.0049 Score=63.54 Aligned_cols=130 Identities=18% Similarity=0.180 Sum_probs=73.8
Q ss_pred ccCCCCCCchHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHH-hhhhcccCCCCCeEEEEE--e--CC-----CCCH
Q 001999 150 SRHASKFPSHKEYVETLEKHLSSGGLKKICICGPLGVGKTTIMEN-SHDSVGESGRFDIIFWVN--V--NT-----DGNI 219 (984)
Q Consensus 150 ~~~~~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~-~~~~~~~~~~F~~~~wv~--v--s~-----~~~~ 219 (984)
.++...+.++......++.++.+. .++.++|..|.|||+||.. ..+.+.. +.|+.++-+. + .+ +-|.
T Consensus 51 ~~~~~~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~l~~-~~~~kIiI~RP~v~~ge~LGfLPG~~ 127 (262)
T PRK10536 51 SRDTSPILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEALIH-KDVDRIIVTRPVLQADEDLGFLPGDI 127 (262)
T ss_pred hcCCccccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHHHhc-CCeeEEEEeCCCCCchhhhCcCCCCH
Confidence 345556788999999999988763 5999999999999999999 3334421 4454444332 1 11 0122
Q ss_pred HH----HHHHHHHHhccCccccchHHHHHHH-----------HHHHcCCcE---EEEEECCCCccc--hhhhccccCCCC
Q 001999 220 SD----IQEIILERLKVNAKELDNAQRADNI-----------SKELKDKRY---VLFLDGVSSEIN--FKEIGIHDDHGR 279 (984)
Q Consensus 220 ~~----i~~~i~~~l~~~~~~~~~~~~~~~l-----------~~~L~~kr~---LlVlDdv~~~~~--~~~~~~~~~~~g 279 (984)
.+ ...-|.+.+..-... +.....+ ..+++|+.+ +||+|+..+... ... .+...+.+
T Consensus 128 ~eK~~p~~~pi~D~L~~~~~~---~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~-~ltR~g~~ 203 (262)
T PRK10536 128 AEKFAPYFRPVYDVLVRRLGA---SFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKM-FLTRLGEN 203 (262)
T ss_pred HHHHHHHHHHHHHHHHHHhCh---HHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHH-HHhhcCCC
Confidence 21 122222222110000 1111111 235667654 999999988643 222 23345688
Q ss_pred cEEEEEc
Q 001999 280 GKVVFAC 286 (984)
Q Consensus 280 s~ilvTT 286 (984)
|++|+|=
T Consensus 204 sk~v~~G 210 (262)
T PRK10536 204 VTVIVNG 210 (262)
T ss_pred CEEEEeC
Confidence 9999884
No 177
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.05 E-value=0.00045 Score=70.54 Aligned_cols=41 Identities=22% Similarity=0.322 Sum_probs=21.4
Q ss_pred ccccceeeecccccccccCcHHHHhhcccccEEeecccchhH
Q 001999 845 LNSLRTLRVKICHSIKTLFSKEMVAQLNELQDLQVEDCQMIE 886 (984)
Q Consensus 845 l~~L~~L~l~~c~~L~~l~~~~~l~~l~~L~~L~l~~c~~l~ 886 (984)
+|.+..|.+... ++.++...+.+..+|+|..|.+++++..+
T Consensus 223 ~p~~~~LnL~~~-~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 223 FPSLSCLNLGAN-NIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred CCcchhhhhccc-ccccHHHHHHHcCCchhheeeccCCcccc
Confidence 444444455444 44444344555566666666666655543
No 178
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.022 Score=67.74 Aligned_cols=104 Identities=18% Similarity=0.327 Sum_probs=64.4
Q ss_pred CCCCchHHHHHHHHHHhcc---------CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHH
Q 001999 154 SKFPSHKEYVETLEKHLSS---------GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQE 224 (984)
Q Consensus 154 ~~~vgr~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~ 224 (984)
..++|.++.++.+.+.+.. ....+...+|+.|||||-||+...+.+- +.=+..+-+..|. -.+
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lf--g~e~aliR~DMSE------y~E 562 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALF--GDEQALIRIDMSE------YME 562 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhc--CCCccceeechHH------HHH
Confidence 3589999999999888753 2356777899999999999999665543 1113333333333 222
Q ss_pred -HHHHHhccCccccchHHHHHHHHHHHcCCcE-EEEEECCCCc
Q 001999 225 -IILERLKVNAKELDNAQRADNISKELKDKRY-VLFLDGVSSE 265 (984)
Q Consensus 225 -~i~~~l~~~~~~~~~~~~~~~l~~~L~~kr~-LlVlDdv~~~ 265 (984)
.-...+-+..+..-.-+--..|-+.++.++| +|.||+|...
T Consensus 563 kHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKA 605 (786)
T COG0542 563 KHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKA 605 (786)
T ss_pred HHHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhc
Confidence 2222232222222221114556677778887 8889999875
No 179
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.03 E-value=0.0024 Score=60.68 Aligned_cols=90 Identities=20% Similarity=0.132 Sum_probs=50.1
Q ss_pred ccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHHHHHhccCccccchHHHHHHHHHHHcCCc
Q 001999 175 LKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEIILERLKVNAKELDNAQRADNISKELKDKR 254 (984)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~kr 254 (984)
...+.|+|++|+||||+|+....... ......+++..+........... ...................+.+..+..+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELG--PPGGGVIYIDGEDILEEVLDQLL-LIIVGGKKASGSGELRLRLALALARKLK 78 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccC--CCCCCEEEECCEEccccCHHHHH-hhhhhccCCCCCHHHHHHHHHHHHHhcC
Confidence 35789999999999999999766665 32234555554443322222211 1111111111112333444455555444
Q ss_pred -EEEEEECCCCccc
Q 001999 255 -YVLFLDGVSSEIN 267 (984)
Q Consensus 255 -~LlVlDdv~~~~~ 267 (984)
.+|++|++.....
T Consensus 79 ~~viiiDei~~~~~ 92 (148)
T smart00382 79 PDVLILDEITSLLD 92 (148)
T ss_pred CCEEEEECCcccCC
Confidence 9999999987643
No 180
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.00 E-value=0.00019 Score=64.84 Aligned_cols=97 Identities=21% Similarity=0.319 Sum_probs=79.0
Q ss_pred EEecCcccCCCcch--HhhcCCCccEEeccCCCCccCCcchh-cccccCeEecCCCcccccCchhhhccCCCcEEEecCc
Q 001999 525 LIVEGRRLEKLPMS--FFEYMCHLQLLDLHDTSIRCLPPSIS-RLINLNALFLRSCSLLFQLPKEIRYLQKLEILDVRHT 601 (984)
Q Consensus 525 L~l~~~~l~~l~~~--~~~~l~~Lr~L~L~~~~i~~lp~~i~-~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~~ 601 (984)
++++++.+-.+++- .+....+|...+|++|.+..+|+.+. ..+.+.+|+|.+| .+..+|..+..++.|+.|+++.|
T Consensus 32 ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lNl~~N 110 (177)
T KOG4579|consen 32 LDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLNLRFN 110 (177)
T ss_pred cccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhcccccC
Confidence 44555544444332 24556788889999999999998887 4458999999984 58999999999999999999999
Q ss_pred cccccchhhhccCCCCeeecc
Q 001999 602 RIQCLPSEIGQLIKLKCLRVS 622 (984)
Q Consensus 602 ~l~~lp~~~~~L~~L~~L~l~ 622 (984)
.+...|..+..|.+|-.|+..
T Consensus 111 ~l~~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 111 PLNAEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred ccccchHHHHHHHhHHHhcCC
Confidence 999999999999999999887
No 181
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.99 E-value=0.0065 Score=71.67 Aligned_cols=197 Identities=16% Similarity=0.204 Sum_probs=101.3
Q ss_pred cCCCCCCchHHHHHHHHHHhcc-----CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCC---CCCHHHH
Q 001999 151 RHASKFPSHKEYVETLEKHLSS-----GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNT---DGNISDI 222 (984)
Q Consensus 151 ~~~~~~vgr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~---~~~~~~i 222 (984)
....+++|.++.++++..|+.. ...+++.|+|+.|+||||+++.....+. ++..-|++-.. ..+...+
T Consensus 81 ~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~----~~~~Ew~npv~~~~~~~~~~~ 156 (637)
T TIGR00602 81 ETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG----IQVQEWSNPTLPDFQKNDHKV 156 (637)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh----hHHHHHhhhhhhccccccccc
Confidence 3446789999999999999875 2346799999999999999999655543 22222321100 0011111
Q ss_pred HHHHHHHhccCccccch-HHHHHHHHH---H----HcCCcEEEEEECCCCcc-----chhhhcc-c--cCCCCcEEEEEc
Q 001999 223 QEIILERLKVNAKELDN-AQRADNISK---E----LKDKRYVLFLDGVSSEI-----NFKEIGI-H--DDHGRGKVVFAC 286 (984)
Q Consensus 223 ~~~i~~~l~~~~~~~~~-~~~~~~l~~---~----L~~kr~LlVlDdv~~~~-----~~~~~~~-~--~~~~gs~ilvTT 286 (984)
...+.+++......... ........+ . ..+++.+|++|++.+.. .+..+.. + ....-.-|++||
T Consensus 157 ~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~~~~lq~lLr~~~~e~~~~pLI~I~T 236 (637)
T TIGR00602 157 TLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRDTRALHEILRWKYVSIGRCPLVFIIT 236 (637)
T ss_pred chhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhhHHHHHHHHHHHhhcCCCceEEEEec
Confidence 12222222111111000 111111111 1 13577899999995421 2222222 2 222222455555
Q ss_pred CCcc---------cc------c-----cCCceEEccCCChHHHHHHHHHHhCCC-CCC-Cc---chHHHHHHHHHHcCCC
Q 001999 287 RSRE---------FC------W-----QADDVIHVERLSPREAKKLFWEVVGVN-LKK-NP---DIEQEADSIVEECGGM 341 (984)
Q Consensus 287 R~~~---------v~------~-----~~~~~~~l~~L~~~~~~~Lf~~~~~~~-~~~-~~---~l~~~~~~I~~~c~Gl 341 (984)
-+.. .. . .....+.+.+++..+-.+.+.+.+... ... .. .-.+....|+..++|-
T Consensus 237 E~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~l~~I~~~s~GD 316 (637)
T TIGR00602 237 ESLEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTSVELLCQGCSGD 316 (637)
T ss_pred CCccccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhhhhccccccccCCHHHHHHHHHhCCCh
Confidence 2211 11 1 234568999999999877777766532 101 11 1135667777777776
Q ss_pred chHHHHHHHH
Q 001999 342 PYMLKLIGKE 351 (984)
Q Consensus 342 Plai~~~~~~ 351 (984)
--.+...-.+
T Consensus 317 iRsAIn~LQf 326 (637)
T TIGR00602 317 IRSAINSLQF 326 (637)
T ss_pred HHHHHHHHHH
Confidence 5444333333
No 182
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.98 E-value=0.0086 Score=70.16 Aligned_cols=166 Identities=16% Similarity=0.207 Sum_probs=91.0
Q ss_pred CCCCchHHHHHHHHHHhc---c---------CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHH
Q 001999 154 SKFPSHKEYVETLEKHLS---S---------GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISD 221 (984)
Q Consensus 154 ~~~vgr~~~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~ 221 (984)
.+++|.++.++++.+.+. . ...+-+.++|++|+|||++|+....... ..| +.++. ..
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~--~~~-----~~i~~----~~ 123 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG--VPF-----FSISG----SD 123 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC--CCe-----eeccH----HH
Confidence 457888877666554432 2 2234688999999999999999766654 333 32221 11
Q ss_pred HHHHHHHHhccCccccchHHHHHHHHHHHcCCcEEEEEECCCCcc------------chhhh---ccc-----cCCCCcE
Q 001999 222 IQEIILERLKVNAKELDNAQRADNISKELKDKRYVLFLDGVSSEI------------NFKEI---GIH-----DDHGRGK 281 (984)
Q Consensus 222 i~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~------------~~~~~---~~~-----~~~~gs~ 281 (984)
+.... .+ .....+...+.......+.+|++||+.... .+... .+. ....+-.
T Consensus 124 ~~~~~---~g-----~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~ 195 (495)
T TIGR01241 124 FVEMF---VG-----VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVI 195 (495)
T ss_pred HHHHH---hc-----ccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeE
Confidence 11110 00 011222233333334567999999995421 11111 000 1223445
Q ss_pred EEEEcCCccccc-------cCCceEEccCCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCC
Q 001999 282 VVFACRSREFCW-------QADDVIHVERLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGM 341 (984)
Q Consensus 282 ilvTTR~~~v~~-------~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~Gl 341 (984)
||.||....... .....+.+...+.++-.++|+.++...... ++ .....+++.+.|.
T Consensus 196 vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~-~~--~~l~~la~~t~G~ 259 (495)
T TIGR01241 196 VIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLA-PD--VDLKAVARRTPGF 259 (495)
T ss_pred EEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCC-cc--hhHHHHHHhCCCC
Confidence 666665543222 345678898888888889998876543111 11 1234778888773
No 183
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=96.98 E-value=0.00019 Score=82.12 Aligned_cols=120 Identities=24% Similarity=0.311 Sum_probs=88.7
Q ss_pred cCeEeeeccCCCCC-CCCCCCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCCcchhcccccCeEecCCC
Q 001999 499 DTKKLSLFGFPSST-LPDMPNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLPPSISRLINLNALFLRSC 577 (984)
Q Consensus 499 ~~r~l~l~~~~~~~-l~~~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c 577 (984)
.+..+.+..|.+.. ......+++|..|++.+|.+..+... +..+.+|++|++++|.|+.+. .+..+..|+.|++.+|
T Consensus 73 ~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N 150 (414)
T KOG0531|consen 73 SLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGN 150 (414)
T ss_pred hHHhhccchhhhhhhhcccccccceeeeeccccchhhcccc-hhhhhcchheecccccccccc-chhhccchhhheeccC
Confidence 33444455555554 33357778888999998888887664 577889999999999888874 3777888999999886
Q ss_pred cccccCchhhhccCCCcEEEecCccccccchh-hhccCCCCeeecc
Q 001999 578 SLLFQLPKEIRYLQKLEILDVRHTRIQCLPSE-IGQLIKLKCLRVS 622 (984)
Q Consensus 578 ~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~-~~~L~~L~~L~l~ 622 (984)
. +..++ .+..+.+|+.+++++|.+..++.. ...+.+|+.+.+.
T Consensus 151 ~-i~~~~-~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~ 194 (414)
T KOG0531|consen 151 L-ISDIS-GLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLG 194 (414)
T ss_pred c-chhcc-CCccchhhhcccCCcchhhhhhhhhhhhccchHHHhcc
Confidence 4 55543 355688889999999888877654 5778888888887
No 184
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.98 E-value=0.001 Score=64.43 Aligned_cols=99 Identities=22% Similarity=0.268 Sum_probs=56.2
Q ss_pred ceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCCcchh-cccccCeEecCCCcccccCch--hhhccCCCcEEE
Q 001999 521 EILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLPPSIS-RLINLNALFLRSCSLLFQLPK--EIRYLQKLEILD 597 (984)
Q Consensus 521 ~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~-~l~~L~~L~L~~c~~l~~lp~--~i~~L~~L~~L~ 597 (984)
+.-.+++++|++..++. |..++.|..|.|++|.|+.+-+.+. .+++|+.|.|.+|. +..+.. .+..++.|++|.
T Consensus 43 ~~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccchhhccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCcc-hhhhhhcchhccCCccceee
Confidence 45566777777766654 6667777777777777777755454 44557777776643 443321 244455566666
Q ss_pred ecCccccccch----hhhccCCCCeeecc
Q 001999 598 VRHTRIQCLPS----EIGQLIKLKCLRVS 622 (984)
Q Consensus 598 l~~~~l~~lp~----~~~~L~~L~~L~l~ 622 (984)
+-+|.+...+. .+.++++|+.|+..
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQ 148 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehh
Confidence 55555443321 13444555555444
No 185
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=96.96 E-value=0.00014 Score=83.20 Aligned_cols=122 Identities=20% Similarity=0.247 Sum_probs=96.1
Q ss_pred hhccCeEeeeccCCCCCCCC-CCCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCCcchhcccccCeEec
Q 001999 496 EWKDTKKLSLFGFPSSTLPD-MPNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLPPSISRLINLNALFL 574 (984)
Q Consensus 496 ~~~~~r~l~l~~~~~~~l~~-~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L 574 (984)
..+.+..+.+.+|.+..+.. ...+++|+.|++++|.+.++.. +..++.|+.|++++|.|..+.. +..++.|+.+++
T Consensus 93 ~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~~l~l 169 (414)
T KOG0531|consen 93 KLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISDISG-LESLKSLKLLDL 169 (414)
T ss_pred cccceeeeeccccchhhcccchhhhhcchheeccccccccccc--hhhccchhhheeccCcchhccC-CccchhhhcccC
Confidence 34678899999999999888 7889999999999999998866 6788889999999999998754 566999999999
Q ss_pred CCCcccccCchh-hhccCCCcEEEecCccccccchhhhccCCCCeeecc
Q 001999 575 RSCSLLFQLPKE-IRYLQKLEILDVRHTRIQCLPSEIGQLIKLKCLRVS 622 (984)
Q Consensus 575 ~~c~~l~~lp~~-i~~L~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~ 622 (984)
++|. +..+... ...+.+|+.+++.++.+..+. .+..+..+..+++.
T Consensus 170 ~~n~-i~~ie~~~~~~~~~l~~l~l~~n~i~~i~-~~~~~~~l~~~~l~ 216 (414)
T KOG0531|consen 170 SYNR-IVDIENDELSELISLEELDLGGNSIREIE-GLDLLKKLVLLSLL 216 (414)
T ss_pred Ccch-hhhhhhhhhhhccchHHHhccCCchhccc-chHHHHHHHHhhcc
Confidence 9965 5555443 588899999999999877553 23333344444443
No 186
>CHL00176 ftsH cell division protein; Validated
Probab=96.95 E-value=0.012 Score=70.01 Aligned_cols=165 Identities=16% Similarity=0.178 Sum_probs=92.5
Q ss_pred CCCCchHHHHHHHHH---Hhcc---------CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHH
Q 001999 154 SKFPSHKEYVETLEK---HLSS---------GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISD 221 (984)
Q Consensus 154 ~~~vgr~~~~~~l~~---~L~~---------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~ 221 (984)
.+++|.++..+++.+ ++.. ...+-+.++|++|+|||++|+....... ..| +.++. ..
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~--~p~-----i~is~----s~ 251 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAE--VPF-----FSISG----SE 251 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC--CCe-----eeccH----HH
Confidence 457888776665544 4433 1245689999999999999999766654 322 33321 11
Q ss_pred HHHHHHHHhccCccccchHHHHHHHHHHHcCCcEEEEEECCCCc------------cch----hhhc--cc--cCCCCcE
Q 001999 222 IQEIILERLKVNAKELDNAQRADNISKELKDKRYVLFLDGVSSE------------INF----KEIG--IH--DDHGRGK 281 (984)
Q Consensus 222 i~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~------------~~~----~~~~--~~--~~~~gs~ 281 (984)
+.... .+ .........+....++.+++|++||+... ... ..+. +. ....+-.
T Consensus 252 f~~~~---~g-----~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~Vi 323 (638)
T CHL00176 252 FVEMF---VG-----VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVI 323 (638)
T ss_pred HHHHh---hh-----hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCee
Confidence 11100 00 00122233344445578899999999532 111 1111 11 1234556
Q ss_pred EEEEcCCccccc-------cCCceEEccCCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCC
Q 001999 282 VVFACRSREFCW-------QADDVIHVERLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGG 340 (984)
Q Consensus 282 ilvTTR~~~v~~-------~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~G 340 (984)
||.||....... .....+.+...+.++-.++++.++.... .. .......+++.+.|
T Consensus 324 VIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~-~~--~d~~l~~lA~~t~G 386 (638)
T CHL00176 324 VIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKK-LS--PDVSLELIARRTPG 386 (638)
T ss_pred EEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcc-cc--hhHHHHHHHhcCCC
Confidence 666665543322 2346788888899998899988775431 11 12245667777777
No 187
>PRK08181 transposase; Validated
Probab=96.95 E-value=0.015 Score=61.40 Aligned_cols=103 Identities=15% Similarity=0.149 Sum_probs=54.7
Q ss_pred HHhccCCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHHHHHhccCccccchHHHHHHHH
Q 001999 168 KHLSSGGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEIILERLKVNAKELDNAQRADNIS 247 (984)
Q Consensus 168 ~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~ 247 (984)
+|+. +..-+.++|++|+|||.||......+. .....++|++ ..++...+..... ....+. +.
T Consensus 101 ~~~~--~~~nlll~Gp~GtGKTHLa~Aia~~a~--~~g~~v~f~~------~~~L~~~l~~a~~----~~~~~~----~l 162 (269)
T PRK08181 101 SWLA--KGANLLLFGPPGGGKSHLAAAIGLALI--ENGWRVLFTR------TTDLVQKLQVARR----ELQLES----AI 162 (269)
T ss_pred HHHh--cCceEEEEecCCCcHHHHHHHHHHHHH--HcCCceeeee------HHHHHHHHHHHHh----CCcHHH----HH
Confidence 5654 334589999999999999999554443 2223455554 3455555543321 111111 22
Q ss_pred HHHcCCcEEEEEECCCCc--cch-hhhccc---cCCCCcEEEEEcCCc
Q 001999 248 KELKDKRYVLFLDGVSSE--INF-KEIGIH---DDHGRGKVVFACRSR 289 (984)
Q Consensus 248 ~~L~~kr~LlVlDdv~~~--~~~-~~~~~~---~~~~gs~ilvTTR~~ 289 (984)
+.+. +-=|||+||+... .++ ....+. ....+..+||||...
T Consensus 163 ~~l~-~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 163 AKLD-KFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred HHHh-cCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 2222 3459999999543 222 222122 111124688888643
No 188
>PRK08118 topology modulation protein; Reviewed
Probab=96.91 E-value=0.00051 Score=67.41 Aligned_cols=35 Identities=31% Similarity=0.615 Sum_probs=27.2
Q ss_pred cEEEEEcCCCChHHHHHHHhhhhcccC-CCCCeEEE
Q 001999 176 KKICICGPLGVGKTTIMENSHDSVGES-GRFDIIFW 210 (984)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~~~~~~~~~-~~F~~~~w 210 (984)
+.|.|+|++|+||||||+...+..... -+||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 358999999999999999977665422 45677775
No 189
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.91 E-value=0.0071 Score=65.96 Aligned_cols=101 Identities=15% Similarity=0.253 Sum_probs=65.6
Q ss_pred HHHHHHHhcc-CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCe-EEEEEeCCC-CCHHHHHHHHHHHhccCccccch
Q 001999 163 VETLEKHLSS-GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDI-IFWVNVNTD-GNISDIQEIILERLKVNAKELDN 239 (984)
Q Consensus 163 ~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~-~~wv~vs~~-~~~~~i~~~i~~~l~~~~~~~~~ 239 (984)
..++++.+.. .+..-+.|+|..|+|||||++...+.+.. ++-+. .+|+.+.+. .++.++.+.+...+.....+...
T Consensus 120 ~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~-~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~ 198 (380)
T PRK12608 120 SMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAA-NHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPP 198 (380)
T ss_pred hHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHh-cCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCH
Confidence 3447777765 45567799999999999999996555541 22233 467677665 46788888888877654322211
Q ss_pred ------HHHHHHHHHHH--cCCcEEEEEECCCC
Q 001999 240 ------AQRADNISKEL--KDKRYVLFLDGVSS 264 (984)
Q Consensus 240 ------~~~~~~l~~~L--~~kr~LlVlDdv~~ 264 (984)
......+.+++ +|++++||+|++-.
T Consensus 199 ~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr 231 (380)
T PRK12608 199 DEHIRVAELVLERAKRLVEQGKDVVILLDSLTR 231 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHH
Confidence 11222223333 58999999999854
No 190
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.052 Score=57.75 Aligned_cols=188 Identities=15% Similarity=0.249 Sum_probs=110.9
Q ss_pred CCCCchHHHHHHHHHHhcc-------------CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHH
Q 001999 154 SKFPSHKEYVETLEKHLSS-------------GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNIS 220 (984)
Q Consensus 154 ~~~vgr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~ 220 (984)
.++-|-++.+++|.+.+.- ...+-|-++|++|.|||-||++++++.. ..| +.|..+
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~--AtF-----IrvvgS---- 219 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTD--ATF-----IRVVGS---- 219 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccC--ceE-----EEeccH----
Confidence 3456889999998887642 4578889999999999999999888876 444 433321
Q ss_pred HHHHHHHHHhccCccccchHHHHHHHHHHHcC-CcEEEEEECCCCcc------------c-----hh---hh-ccccCCC
Q 001999 221 DIQEIILERLKVNAKELDNAQRADNISKELKD-KRYVLFLDGVSSEI------------N-----FK---EI-GIHDDHG 278 (984)
Q Consensus 221 ~i~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~-kr~LlVlDdv~~~~------------~-----~~---~~-~~~~~~~ 278 (984)
++.+.-+ | ....+...+.+.-+. ....|++|.+.... + ++ ++ +| +...
T Consensus 220 ElVqKYi---G------EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGF-D~~~ 289 (406)
T COG1222 220 ELVQKYI---G------EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGF-DPRG 289 (406)
T ss_pred HHHHHHh---c------cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCC-CCCC
Confidence 2222111 1 114455666666554 58999999985420 1 11 11 22 3345
Q ss_pred CcEEEEEcCCccccc-------cCCceEEccCCChHHH-HHHHHHHhCCC-CCCCcchHHHHHHHHHHcCCCc----hHH
Q 001999 279 RGKVVFACRSREFCW-------QADDVIHVERLSPREA-KKLFWEVVGVN-LKKNPDIEQEADSIVEECGGMP----YML 345 (984)
Q Consensus 279 gs~ilvTTR~~~v~~-------~~~~~~~l~~L~~~~~-~~Lf~~~~~~~-~~~~~~l~~~~~~I~~~c~GlP----lai 345 (984)
.-|||..|-..++.. .-+..++++ +.++++ .+.|+-++..= ....-+++ .+++.|.|.- -|+
T Consensus 290 nvKVI~ATNR~D~LDPALLRPGR~DRkIEfp-lPd~~gR~~Il~IHtrkM~l~~dvd~e----~la~~~~g~sGAdlkai 364 (406)
T COG1222 290 NVKVIMATNRPDILDPALLRPGRFDRKIEFP-LPDEEGRAEILKIHTRKMNLADDVDLE----LLARLTEGFSGADLKAI 364 (406)
T ss_pred CeEEEEecCCccccChhhcCCCcccceeecC-CCCHHHHHHHHHHHhhhccCccCcCHH----HHHHhcCCCchHHHHHH
Confidence 569998887766644 344567776 555555 55666555432 22334444 4566666654 445
Q ss_pred HHHHHHhhcC-----ccHHHHHHHHHH
Q 001999 346 KLIGKELVNQ-----SEVAIWRATVDD 367 (984)
Q Consensus 346 ~~~~~~l~~~-----~~~~~w~~~l~~ 367 (984)
.+=|++++-+ -+.+++..+.++
T Consensus 365 ctEAGm~AiR~~R~~Vt~~DF~~Av~K 391 (406)
T COG1222 365 CTEAGMFAIRERRDEVTMEDFLKAVEK 391 (406)
T ss_pred HHHHhHHHHHhccCeecHHHHHHHHHH
Confidence 5566665543 234455544444
No 191
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.82 E-value=0.11 Score=64.74 Aligned_cols=46 Identities=22% Similarity=0.374 Sum_probs=36.2
Q ss_pred CCCCchHHHHHHHHHHhcc-------CC--ccEEEEEcCCCChHHHHHHHhhhhc
Q 001999 154 SKFPSHKEYVETLEKHLSS-------GG--LKKICICGPLGVGKTTIMENSHDSV 199 (984)
Q Consensus 154 ~~~vgr~~~~~~l~~~L~~-------~~--~~vi~I~G~gGiGKTtLa~~~~~~~ 199 (984)
..++|.+..++.+.+.+.. +. ..++.++|+.|+|||++|+...+..
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l 622 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM 622 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999988887753 11 2478899999999999999965554
No 192
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.78 E-value=0.032 Score=61.06 Aligned_cols=91 Identities=11% Similarity=0.119 Sum_probs=57.6
Q ss_pred CCcEEEEEECCCCcc--chhhh--ccccCCCCcEEEEEcCCc-cccc---cCCceEEccCCChHHHHHHHHHHhCCCCCC
Q 001999 252 DKRYVLFLDGVSSEI--NFKEI--GIHDDHGRGKVVFACRSR-EFCW---QADDVIHVERLSPREAKKLFWEVVGVNLKK 323 (984)
Q Consensus 252 ~kr~LlVlDdv~~~~--~~~~~--~~~~~~~gs~ilvTTR~~-~v~~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~ 323 (984)
+++-++|+|++.... ....+ .+..-..++.+|+||.+. .+.. .....+.+.+++.+++.+.+.+.....
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~~--- 181 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPES--- 181 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhcccC---
Confidence 455566789998753 22222 111222456666666654 4433 567789999999999999888764211
Q ss_pred CcchHHHHHHHHHHcCCCchHHHHH
Q 001999 324 NPDIEQEADSIVEECGGMPYMLKLI 348 (984)
Q Consensus 324 ~~~l~~~~~~I~~~c~GlPlai~~~ 348 (984)
..+.+..++..++|.|..+..+
T Consensus 182 ---~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 182 ---DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred ---ChHHHHHHHHHcCCCHHHHHHH
Confidence 1334567789999999765544
No 193
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.73 E-value=0.037 Score=62.62 Aligned_cols=91 Identities=13% Similarity=0.289 Sum_probs=59.8
Q ss_pred CCCCchHHHHHHHHHHhcc------------CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHH
Q 001999 154 SKFPSHKEYVETLEKHLSS------------GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISD 221 (984)
Q Consensus 154 ~~~vgr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~ 221 (984)
.++-|.+..++++.+++.. ...+-+-++|++|+|||.||+....... -. ++.++.+
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~--vP-----f~~isAp----- 257 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELG--VP-----FLSISAP----- 257 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcC--Cc-----eEeecch-----
Confidence 4567899998888877653 3457788999999999999999877776 33 3444432
Q ss_pred HHHHHHHHhccCccccchHHHHHHHH-HHHcCCcEEEEEECCCC
Q 001999 222 IQEIILERLKVNAKELDNAQRADNIS-KELKDKRYVLFLDGVSS 264 (984)
Q Consensus 222 i~~~i~~~l~~~~~~~~~~~~~~~l~-~~L~~kr~LlVlDdv~~ 264 (984)
+|+.... +.+ ++.+.++. +.-..-.+++++|++..
T Consensus 258 ---eivSGvS----GES-EkkiRelF~~A~~~aPcivFiDeIDA 293 (802)
T KOG0733|consen 258 ---EIVSGVS----GES-EKKIRELFDQAKSNAPCIVFIDEIDA 293 (802)
T ss_pred ---hhhcccC----ccc-HHHHHHHHHHHhccCCeEEEeecccc
Confidence 2222221 222 33344443 34456799999999964
No 194
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.70 E-value=0.0044 Score=58.20 Aligned_cols=23 Identities=39% Similarity=0.638 Sum_probs=20.4
Q ss_pred EEEEcCCCChHHHHHHHhhhhcc
Q 001999 178 ICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 178 i~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
|.|+|+.|+||||+|+...+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 56899999999999999877765
No 195
>PRK12377 putative replication protein; Provisional
Probab=96.70 E-value=0.0063 Score=63.48 Aligned_cols=75 Identities=20% Similarity=0.253 Sum_probs=45.6
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHHHHHhccCccccchHHHHHHHHHHHcCC
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEIILERLKVNAKELDNAQRADNISKELKDK 253 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~k 253 (984)
....+.++|..|+|||+||......+. .....++++++. ++...|-...... .... .+.+.+ .+
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~--~~g~~v~~i~~~------~l~~~l~~~~~~~---~~~~----~~l~~l-~~ 163 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLL--AKGRSVIVVTVP------DVMSRLHESYDNG---QSGE----KFLQEL-CK 163 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHH--HcCCCeEEEEHH------HHHHHHHHHHhcc---chHH----HHHHHh-cC
Confidence 346889999999999999999666654 333345666543 4555554433211 0111 222222 46
Q ss_pred cEEEEEECCCC
Q 001999 254 RYVLFLDGVSS 264 (984)
Q Consensus 254 r~LlVlDdv~~ 264 (984)
-=||||||+..
T Consensus 164 ~dLLiIDDlg~ 174 (248)
T PRK12377 164 VDLLVLDEIGI 174 (248)
T ss_pred CCEEEEcCCCC
Confidence 67899999943
No 196
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.65 E-value=0.13 Score=56.90 Aligned_cols=189 Identities=15% Similarity=0.217 Sum_probs=113.0
Q ss_pred hHHHHHHHHHHhccCCccEEEEEcCCCChHHHHH-HHhhhhcccCCCCCeEEEEEeCCC---CCHHHHHHHHHHHhc---
Q 001999 159 HKEYVETLEKHLSSGGLKKICICGPLGVGKTTIM-ENSHDSVGESGRFDIIFWVNVNTD---GNISDIQEIILERLK--- 231 (984)
Q Consensus 159 r~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa-~~~~~~~~~~~~F~~~~wv~vs~~---~~~~~i~~~i~~~l~--- 231 (984)
|.+..++|..||.+..-..|.|.|+-|+||+.|+ .++-+.-+ .+..+.+.+- .+-..+++.++.++|
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r~------~vL~IDC~~i~~ar~D~~~I~~lA~qvGY~P 74 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDRK------NVLVIDCDQIVKARGDAAFIKNLASQVGYFP 74 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCCC------CEEEEEChHhhhccChHHHHHHHHHhcCCCc
Confidence 5678899999999988899999999999999999 44322211 1444443221 122333444444332
Q ss_pred --------------------cCccccch---HHHHHH-------HHH-------------------HHc---CCcEEEEE
Q 001999 232 --------------------VNAKELDN---AQRADN-------ISK-------------------ELK---DKRYVLFL 259 (984)
Q Consensus 232 --------------------~~~~~~~~---~~~~~~-------l~~-------------------~L~---~kr~LlVl 259 (984)
+...+.++ .++... |++ +|+ .+|-+||+
T Consensus 75 vFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVVI 154 (431)
T PF10443_consen 75 VFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVVI 154 (431)
T ss_pred chHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEEE
Confidence 22211111 111111 111 011 13679999
Q ss_pred ECCCCc-----------cchhhhccccCCCCcEEEEEcCCccccc--------cCCceEEccCCChHHHHHHHHHHhCCC
Q 001999 260 DGVSSE-----------INFKEIGIHDDHGRGKVVFACRSREFCW--------QADDVIHVERLSPREAKKLFWEVVGVN 320 (984)
Q Consensus 260 Ddv~~~-----------~~~~~~~~~~~~~gs~ilvTTR~~~v~~--------~~~~~~~l~~L~~~~~~~Lf~~~~~~~ 320 (984)
|+.-.. .+|.... ...+-.+||++|-+..... .....+.|...+.+.|..+...+....
T Consensus 155 dnF~~k~~~~~~iy~~laeWAa~L--v~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~~~ 232 (431)
T PF10443_consen 155 DNFLHKAEENDFIYDKLAEWAASL--VQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQLDED 232 (431)
T ss_pred cchhccCcccchHHHHHHHHHHHH--HhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhccc
Confidence 998542 1344321 2345568999888765543 455688999999999999999887543
Q ss_pred CCC-------------C-----cchHHHHHHHHHHcCCCchHHHHHHHHhhcC
Q 001999 321 LKK-------------N-----PDIEQEADSIVEECGGMPYMLKLIGKELVNQ 355 (984)
Q Consensus 321 ~~~-------------~-----~~l~~~~~~I~~~c~GlPlai~~~~~~l~~~ 355 (984)
... . .....-....+...||=-.-+..+++.++..
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksG 285 (431)
T PF10443_consen 233 TEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSG 285 (431)
T ss_pred ccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcC
Confidence 100 0 1223334556677788777777777777766
No 197
>PRK07261 topology modulation protein; Provisional
Probab=96.61 E-value=0.0071 Score=59.69 Aligned_cols=67 Identities=25% Similarity=0.256 Sum_probs=40.3
Q ss_pred EEEEEcCCCChHHHHHHHhhhhccc-CCCCCeEEEEEeCCCCCHHHHHHHHHHHhccCccccchHHHHHHHHHHHcCCcE
Q 001999 177 KICICGPLGVGKTTIMENSHDSVGE-SGRFDIIFWVNVNTDGNISDIQEIILERLKVNAKELDNAQRADNISKELKDKRY 255 (984)
Q Consensus 177 vi~I~G~gGiGKTtLa~~~~~~~~~-~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~kr~ 255 (984)
.|.|+|++|+||||||+........ .-+.|...|-.... ..+.++....+.+.+.+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~- 60 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNWQ--------------------ERDDDDMIADISNFLLKHD- 60 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccccc--------------------cCCHHHHHHHHHHHHhCCC-
Confidence 4899999999999999985544321 12345555522111 1112445555666666666
Q ss_pred EEEEECCCCc
Q 001999 256 VLFLDGVSSE 265 (984)
Q Consensus 256 LlVlDdv~~~ 265 (984)
.|+|+....
T Consensus 61 -wIidg~~~~ 69 (171)
T PRK07261 61 -WIIDGNYSW 69 (171)
T ss_pred -EEEcCcchh
Confidence 577887543
No 198
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.58 E-value=0.0015 Score=66.89 Aligned_cols=33 Identities=24% Similarity=0.284 Sum_probs=18.8
Q ss_pred cCCCcEEEecCccccc---cchhhhccCCCCeeecc
Q 001999 590 LQKLEILDVRHTRIQC---LPSEIGQLIKLKCLRVS 622 (984)
Q Consensus 590 L~~L~~L~l~~~~l~~---lp~~~~~L~~L~~L~l~ 622 (984)
.+.++.||+.+|.|.. +-.-+.+|+.|+.|+++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls 105 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLS 105 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeecc
Confidence 4556666666665552 22334566666666665
No 199
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.56 E-value=0.12 Score=59.89 Aligned_cols=76 Identities=20% Similarity=0.349 Sum_probs=57.2
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHHHHHhccCccccchHHHHHHHHHHHcC
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEIILERLKVNAKELDNAQRADNISKELKD 252 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~ 252 (984)
+.-+|+-+.|++|+||||||+-.++... | .++-+++|+.-....+-+.|...+........ .+
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqaG----Y-sVvEINASDeRt~~~v~~kI~~avq~~s~l~a------------ds 386 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQAG----Y-SVVEINASDERTAPMVKEKIENAVQNHSVLDA------------DS 386 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhcC----c-eEEEecccccccHHHHHHHHHHHHhhcccccc------------CC
Confidence 4578999999999999999999887754 3 47788899988887777777766543322110 26
Q ss_pred CcEEEEEECCCCc
Q 001999 253 KRYVLFLDGVSSE 265 (984)
Q Consensus 253 kr~LlVlDdv~~~ 265 (984)
++.-||+|.+...
T Consensus 387 rP~CLViDEIDGa 399 (877)
T KOG1969|consen 387 RPVCLVIDEIDGA 399 (877)
T ss_pred CcceEEEecccCC
Confidence 7888999999764
No 200
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.53 E-value=0.14 Score=52.40 Aligned_cols=225 Identities=13% Similarity=0.162 Sum_probs=124.4
Q ss_pred CCCCchHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHH-hhhhcc---cCCCCCeEEEEEeCCC----------C--
Q 001999 154 SKFPSHKEYVETLEKHLSSGGLKKICICGPLGVGKTTIMEN-SHDSVG---ESGRFDIIFWVNVNTD----------G-- 217 (984)
Q Consensus 154 ~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~-~~~~~~---~~~~F~~~~wv~vs~~----------~-- 217 (984)
..+.++++....+......+..+-.-++|++|.||-|.+.. ..+-.. +.-+-+.+.|.+-|.. +
T Consensus 13 ~~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHl 92 (351)
T KOG2035|consen 13 DELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHL 92 (351)
T ss_pred hhcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceE
Confidence 44778888888888877767789999999999999999887 222221 1122345555543332 1
Q ss_pred ---------CHHHHHHHHHHHhccCccccchHHHHHHHHHHHcCCcE-EEEEECCCCcc--chhhh--ccccCCCCcEEE
Q 001999 218 ---------NISDIQEIILERLKVNAKELDNAQRADNISKELKDKRY-VLFLDGVSSEI--NFKEI--GIHDDHGRGKVV 283 (984)
Q Consensus 218 ---------~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~kr~-LlVlDdv~~~~--~~~~~--~~~~~~~gs~il 283 (984)
.-+.+.++|++++....+-... ..+.| ++|+-.+.+.. .-..+ ....-...+|+|
T Consensus 93 EitPSDaG~~DRvViQellKevAQt~qie~~-----------~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlI 161 (351)
T KOG2035|consen 93 EITPSDAGNYDRVVIQELLKEVAQTQQIETQ-----------GQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRLI 161 (351)
T ss_pred EeChhhcCcccHHHHHHHHHHHHhhcchhhc-----------cccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceEE
Confidence 1233444555544332211110 12344 44554444321 11111 011223456666
Q ss_pred EEcCC--ccccc--cCCceEEccCCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCCchHHHHHHHHhhcC----
Q 001999 284 FACRS--REFCW--QADDVIHVERLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGMPYMLKLIGKELVNQ---- 355 (984)
Q Consensus 284 vTTR~--~~v~~--~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~~~~~l~~~---- 355 (984)
+..-+ +-+.. ...-.+++..-+++|-...+.+.+..+.-.-| .+++.+|+++++|.---+..+-..++-+
T Consensus 162 l~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp--~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~~ 239 (351)
T KOG2035|consen 162 LVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP--KELLKRIAEKSNRNLRRALLMLEAVRVNNEPF 239 (351)
T ss_pred EEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc--HHHHHHHHHHhcccHHHHHHHHHHHHhccccc
Confidence 54322 22222 55667899999999999999998766532333 6799999999998664333333333321
Q ss_pred ------ccHHHHHHHHHHhhcCCccccccHHHHHHHHHHHHhc
Q 001999 356 ------SEVAIWRATVDDLRSTSSEEKKELEEVYRFFKLVYKN 392 (984)
Q Consensus 356 ------~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~ 392 (984)
...-+|+-++.++..... ..+.-..+.++-..=|+-
T Consensus 240 ~a~~~~i~~~dWe~~i~e~a~~i~-~eQs~~~L~~vR~~LYeL 281 (351)
T KOG2035|consen 240 TANSQVIPKPDWEIYIQEIARVIL-KEQSPAKLLEVRGRLYEL 281 (351)
T ss_pred cccCCCCCCccHHHHHHHHHHHHH-hccCHHHHHHHHHHHHHH
Confidence 235689988877544322 222223344444444443
No 201
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.51 E-value=0.00045 Score=81.33 Aligned_cols=190 Identities=17% Similarity=0.191 Sum_probs=82.3
Q ss_pred cccccceEEccCCCCchhH----HHHHhhhccceeeccc-ccccccc---ccccccccccCeeEEcccCCceEEecCCCC
Q 001999 742 WSAEKHLRFSAGVEEIPGE----FLTILKQAYSFELIGS-QYAVNLS---NFGVDNLVRLQACVIEDCNEMTSIIDGNHR 813 (984)
Q Consensus 742 ~~~L~~L~l~~~~~~l~~~----~~~~l~~L~~L~l~~~-~~~~~l~---~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~ 813 (984)
++.++.|.+. +|..+... .....++|+.|.+.++ ......+ ......+++|+.|+++.|..+++.....-
T Consensus 187 ~~~L~~l~l~-~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l- 264 (482)
T KOG1947|consen 187 CPLLKRLSLS-GCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL- 264 (482)
T ss_pred CchhhHhhhc-ccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH-
Confidence 3446667776 66555542 2334455666655441 1111111 00122346666666666654333221110
Q ss_pred CcccCCCcceeecccccccccccccccccCcccccceeeecccccccccCcHHHHhhcccccEEeeccc---chhHHHhh
Q 001999 814 GVVPFQGLNNLHIKNLPKLMHIWVGPIASGSLNSLRTLRVKICHSIKTLFSKEMVAQLNELQDLQVEDC---QMIEEIVE 890 (984)
Q Consensus 814 ~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~l~~l~~L~~L~l~~c---~~l~~i~~ 890 (984)
...+++|+.|.+.+|+.+++--.. .-...+++|++|+|++|..+++..-.....++++|+.|.+..+ ..++...
T Consensus 265 -~~~c~~L~~L~l~~c~~lt~~gl~-~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~- 341 (482)
T KOG1947|consen 265 -ASRCPNLETLSLSNCSNLTDEGLV-SIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLS- 341 (482)
T ss_pred -HhhCCCcceEccCCCCccchhHHH-HHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHH-
Confidence 001456666666666653321000 0013456666666666665544311223444565555554333 2343221
Q ss_pred cCcccccCCC-CcccEeeccCCccccccCCCCccCCCCcc-eEeecccccc
Q 001999 891 AGTVLAIGEF-PKLKTLELIDLPKLSTICNSLLLPWPSLE-TIKIKACNAL 939 (984)
Q Consensus 891 ~~~~~~~~~~-~~L~~L~L~~c~~L~~i~~~~~~~l~sL~-~L~i~~C~~L 939 (984)
+....... ..+..+.+.+|++++.+...... ..... .+.+.+||++
T Consensus 342 --l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~l~gc~~l 389 (482)
T KOG1947|consen 342 --LSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDLGLELSLRGCPNL 389 (482)
T ss_pred --HHHhhccCchhHhHHHHhcCCCcchhhhhhhh-ccCcchHHHhcCCccc
Confidence 00011111 14555555555555554431111 22222 4555666666
No 202
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=96.50 E-value=0.19 Score=51.30 Aligned_cols=173 Identities=17% Similarity=0.165 Sum_probs=102.2
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeC-CCCCHHHHHHHHHHHhccCccccch----HHHHHHHH
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVN-TDGNISDIQEIILERLKVNAKELDN----AQRADNIS 247 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs-~~~~~~~i~~~i~~~l~~~~~~~~~----~~~~~~l~ 247 (984)
++..++.++|.-|.|||.+++......- + +.++=|.+. .......+...|+..+..+ +.+.. +.....+.
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~s~~--~--d~~~~v~i~~~~~s~~~~~~ai~~~l~~~-p~~~~~~~~e~~~~~L~ 123 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLASLN--E--DQVAVVVIDKPTLSDATLLEAIVADLESQ-PKVNVNAVLEQIDRELA 123 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHHhcC--C--CceEEEEecCcchhHHHHHHHHHHHhccC-ccchhHHHHHHHHHHHH
Confidence 5667999999999999999996322221 1 111113333 3456778888888888762 22222 33334444
Q ss_pred HHH-cCCc-EEEEEECCCCc--cchhhh-ccc-----cCCCCcEEEEEc-------CCccccc---cCCceEEccCCChH
Q 001999 248 KEL-KDKR-YVLFLDGVSSE--INFKEI-GIH-----DDHGRGKVVFAC-------RSREFCW---QADDVIHVERLSPR 307 (984)
Q Consensus 248 ~~L-~~kr-~LlVlDdv~~~--~~~~~~-~~~-----~~~~gs~ilvTT-------R~~~v~~---~~~~~~~l~~L~~~ 307 (984)
... +++| ..++.||.... ...+.+ .+. ..+.=+.+++-- |-..... ...-.|.+.|++.+
T Consensus 124 al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~ 203 (269)
T COG3267 124 ALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEA 203 (269)
T ss_pred HHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChH
Confidence 433 4677 99999998754 223322 111 112222333311 1111111 22334999999999
Q ss_pred HHHHHHHHHhCCCCCC-CcchHHHHHHHHHHcCCCchHHHHHHH
Q 001999 308 EAKKLFWEVVGVNLKK-NPDIEQEADSIVEECGGMPYMLKLIGK 350 (984)
Q Consensus 308 ~~~~Lf~~~~~~~~~~-~~~l~~~~~~I~~~c~GlPlai~~~~~ 350 (984)
+...+++....+.... +---.+....|..+..|.|.+|..++.
T Consensus 204 ~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 204 ETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 9988888877655212 222356778899999999999987765
No 203
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.46 E-value=0.013 Score=60.98 Aligned_cols=112 Identities=11% Similarity=0.225 Sum_probs=60.9
Q ss_pred HHHHHHHHHhcc--CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHHHHHhccCccccc
Q 001999 161 EYVETLEKHLSS--GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEIILERLKVNAKELD 238 (984)
Q Consensus 161 ~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~ 238 (984)
..+..+.++..+ .....+.++|.+|+|||+||......+. ..-..+++++ ..++...+-..... ..
T Consensus 83 ~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~--~~g~~v~~it------~~~l~~~l~~~~~~--~~-- 150 (244)
T PRK07952 83 NALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELL--LRGKSVLIIT------VADIMSAMKDTFSN--SE-- 150 (244)
T ss_pred HHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEE------HHHHHHHHHHHHhh--cc--
Confidence 345555555543 2345789999999999999999555554 2223455664 34455554443321 11
Q ss_pred hHHHHHHHHHHHcCCcEEEEEECCCCc--cchhhh-ccc----cCCCCcEEEEEcC
Q 001999 239 NAQRADNISKELKDKRYVLFLDGVSSE--INFKEI-GIH----DDHGRGKVVFACR 287 (984)
Q Consensus 239 ~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~~-~~~----~~~~gs~ilvTTR 287 (984)
.....+.+.+. +.=+||+||+... .+|+.- ... --...-.+||||-
T Consensus 151 --~~~~~~l~~l~-~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSN 203 (244)
T PRK07952 151 --TSEEQLLNDLS-NVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTN 203 (244)
T ss_pred --ccHHHHHHHhc-cCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCC
Confidence 11122334455 3458888999653 355532 111 1122346777774
No 204
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.29 E-value=0.00039 Score=70.29 Aligned_cols=81 Identities=19% Similarity=0.227 Sum_probs=43.9
Q ss_pred hccCeEeeeccCCCCCCCCCCCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCC--cchhcccccCeEec
Q 001999 497 WKDTKKLSLFGFPSSTLPDMPNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLP--PSISRLINLNALFL 574 (984)
Q Consensus 497 ~~~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp--~~i~~l~~L~~L~L 574 (984)
..+++.|..+++.+..+....+++.|++|.|+-|.++.+.+ |..++.|+.|.|..|.|.++. ..+.++++||.|-|
T Consensus 18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 34566666666666655444555555555555555555443 455555555555555555442 23445555555555
Q ss_pred CCCcc
Q 001999 575 RSCSL 579 (984)
Q Consensus 575 ~~c~~ 579 (984)
..|..
T Consensus 96 ~ENPC 100 (388)
T KOG2123|consen 96 DENPC 100 (388)
T ss_pred ccCCc
Confidence 55443
No 205
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.27 E-value=0.012 Score=63.84 Aligned_cols=46 Identities=22% Similarity=0.377 Sum_probs=39.6
Q ss_pred CCCchHHHHHHHHHHhcc------CCccEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 155 KFPSHKEYVETLEKHLSS------GGLKKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 155 ~~vgr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
+++|.++.++++++++.. ...+++.++|++|+||||||+.....+.
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~ 103 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 699999999999999865 3468999999999999999999665553
No 206
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.24 E-value=0.058 Score=56.82 Aligned_cols=164 Identities=14% Similarity=0.187 Sum_probs=96.4
Q ss_pred CCCCCCchHHHHHHHHHHhcc----CCccEEEEEcCCCChHHHHHHHhhhhcccCCCC-CeEEEEEeCCCCCH-HHHHHH
Q 001999 152 HASKFPSHKEYVETLEKHLSS----GGLKKICICGPLGVGKTTIMENSHDSVGESGRF-DIIFWVNVNTDGNI-SDIQEI 225 (984)
Q Consensus 152 ~~~~~vgr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F-~~~~wv~vs~~~~~-~~i~~~ 225 (984)
+-..++|..++..++-+++.. ++..-+.|+|+.|.|||+|....-.+. +.| +..+-|......-. +-.++.
T Consensus 22 ~~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~---q~~~E~~l~v~Lng~~~~dk~al~~ 98 (408)
T KOG2228|consen 22 PHINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDI---QENGENFLLVRLNGELQTDKIALKG 98 (408)
T ss_pred CCcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhH---HhcCCeEEEEEECccchhhHHHHHH
Confidence 345589999999998888865 667778899999999999998732222 233 22334444444332 234566
Q ss_pred HHHHhccCccc----cch-HHHHHHHHHHHcC------CcEEEEEECCCCcc---------chhhhccccCCCCcEEEEE
Q 001999 226 ILERLKVNAKE----LDN-AQRADNISKELKD------KRYVLFLDGVSSEI---------NFKEIGIHDDHGRGKVVFA 285 (984)
Q Consensus 226 i~~~l~~~~~~----~~~-~~~~~~l~~~L~~------kr~LlVlDdv~~~~---------~~~~~~~~~~~~gs~ilvT 285 (984)
|.+++...... ... .+...+|-..|+. -+++.|+|.++-.. .+-++.-....+-|-|-+|
T Consensus 99 I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~T 178 (408)
T KOG2228|consen 99 ITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVT 178 (408)
T ss_pred HHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEee
Confidence 66665332211 111 4444555555542 25777787765321 1112222245667788899
Q ss_pred cCCccccc---------cCCceEEccCCChHHHHHHHHHHhC
Q 001999 286 CRSREFCW---------QADDVIHVERLSPREAKKLFWEVVG 318 (984)
Q Consensus 286 TR~~~v~~---------~~~~~~~l~~L~~~~~~~Lf~~~~~ 318 (984)
||-..... .-..++-+++++-++..+++++...
T Consensus 179 trld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll~ 220 (408)
T KOG2228|consen 179 TRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLLS 220 (408)
T ss_pred ccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHhc
Confidence 99754422 2223455666777777777777653
No 207
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.20 E-value=0.024 Score=59.56 Aligned_cols=91 Identities=18% Similarity=0.215 Sum_probs=58.8
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhcccCCCC-CeEEEEEeCCCC-CHHHHHHHHHHHhcc--------Cccccch---
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSVGESGRF-DIIFWVNVNTDG-NISDIQEIILERLKV--------NAKELDN--- 239 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F-~~~~wv~vs~~~-~~~~i~~~i~~~l~~--------~~~~~~~--- 239 (984)
.+-.-++|+|..|+|||||++.....++ .+| +..+++.+.+.. .+.++.+++.+.-.. ..+....
T Consensus 67 g~GQr~~If~~~G~GKTtLa~~i~~~i~--~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~ 144 (274)
T cd01133 67 AKGGKIGLFGGAGVGKTVLIMELINNIA--KAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARA 144 (274)
T ss_pred ccCCEEEEecCCCCChhHHHHHHHHHHH--hcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 4567889999999999999999777776 455 456677777654 355666666543111 1111111
Q ss_pred --HHHHHHHHHHH---cCCcEEEEEECCCCc
Q 001999 240 --AQRADNISKEL---KDKRYVLFLDGVSSE 265 (984)
Q Consensus 240 --~~~~~~l~~~L---~~kr~LlVlDdv~~~ 265 (984)
....-.+.+++ +|+.+|+++||+-..
T Consensus 145 ~~~~~a~~~AEyfr~~~g~~Vl~~~Dsltr~ 175 (274)
T cd01133 145 RVALTGLTMAEYFRDEEGQDVLLFIDNIFRF 175 (274)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEeChhHH
Confidence 12233355655 389999999998654
No 208
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.20 E-value=0.096 Score=65.29 Aligned_cols=105 Identities=14% Similarity=0.240 Sum_probs=58.9
Q ss_pred CCCCchHHHHHHHHHHhcc-------C--CccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHH
Q 001999 154 SKFPSHKEYVETLEKHLSS-------G--GLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQE 224 (984)
Q Consensus 154 ~~~vgr~~~~~~l~~~L~~-------~--~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~ 224 (984)
..++|.+..++.+.+.+.. + ....+.++|+.|+|||+||+...+.+- ..-...+-+..+.-.+...+.+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~--~~~~~~~~~d~s~~~~~~~~~~ 586 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFF--GSEDAMIRLDMSEYMEKHTVSK 586 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhc--CCccceEEEEchhccccccHHH
Confidence 5689999999999888753 1 134567999999999999999665542 1112233444443222111111
Q ss_pred HHHHHhccCccccchHHHHHHHHHHHcCCc-EEEEEECCCCc
Q 001999 225 IILERLKVNAKELDNAQRADNISKELKDKR-YVLFLDGVSSE 265 (984)
Q Consensus 225 ~i~~~l~~~~~~~~~~~~~~~l~~~L~~kr-~LlVlDdv~~~ 265 (984)
-++.+ +....-+....+.+.++.++ -+++||++...
T Consensus 587 ----l~g~~-~gyvg~~~~~~l~~~~~~~p~~VvllDeieka 623 (821)
T CHL00095 587 ----LIGSP-PGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKA 623 (821)
T ss_pred ----hcCCC-CcccCcCccchHHHHHHhCCCeEEEECChhhC
Confidence 11211 11101111123445555555 58899999764
No 209
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.18 E-value=0.029 Score=58.37 Aligned_cols=87 Identities=17% Similarity=0.164 Sum_probs=51.6
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHHHHH----hccCc---cccch---HHH
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEIILER----LKVNA---KELDN---AQR 242 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~----l~~~~---~~~~~---~~~ 242 (984)
..-.++.|+|.+|+|||++|.+...... ..-..++|++.. .++..++.+ +... +.... ...+. .+.
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~~~--~~~~~v~yi~~e-~~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVEAA--KNGKKVIYIDTE-GLSPERFKQ-IAGEDFEELLSNIIIFEPSSFEEQSEA 96 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEECC-CCCHHHHHH-HHhhChHhHhhCeEEEeCCCHHHHHHH
Confidence 3567999999999999999999444332 234578899887 666655433 3222 10000 00111 223
Q ss_pred HHHHHHHHcCCcEEEEEECCC
Q 001999 243 ADNISKELKDKRYVLFLDGVS 263 (984)
Q Consensus 243 ~~~l~~~L~~kr~LlVlDdv~ 263 (984)
...+.+.++.+.-++|+|.+-
T Consensus 97 i~~~~~~~~~~~~lvVIDsi~ 117 (225)
T PRK09361 97 IRKAEKLAKENVGLIVLDSAT 117 (225)
T ss_pred HHHHHHHHHhcccEEEEeCcH
Confidence 344444444666788888874
No 210
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.18 E-value=0.21 Score=54.26 Aligned_cols=169 Identities=16% Similarity=0.174 Sum_probs=92.8
Q ss_pred HHHHHHHHHHhccCCcc-EEEEEcCCCChHHHHHHHhhhhcccCC----------------CCCeEEEEEeCCCCCHHHH
Q 001999 160 KEYVETLEKHLSSGGLK-KICICGPLGVGKTTIMENSHDSVGESG----------------RFDIIFWVNVNTDGNISDI 222 (984)
Q Consensus 160 ~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~~~~~~~~~~----------------~F~~~~wv~vs~~~~~~~i 222 (984)
+...+.+...+..+++. .+-++|+.|+||+++|....+.+--.. ...-..||.......
T Consensus 10 ~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~---- 85 (319)
T PRK08769 10 QRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRT---- 85 (319)
T ss_pred HHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcc----
Confidence 44566677777666554 588999999999999988433321000 001122221000000
Q ss_pred HHHHHHHhccCccccchHHHHHHHHHHH-----cCCcEEEEEECCCCccc-----hhhhccccCCCCcEEEEEcCC-ccc
Q 001999 223 QEIILERLKVNAKELDNAQRADNISKEL-----KDKRYVLFLDGVSSEIN-----FKEIGIHDDHGRGKVVFACRS-REF 291 (984)
Q Consensus 223 ~~~i~~~l~~~~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~~~-----~~~~~~~~~~~gs~ilvTTR~-~~v 291 (984)
+......-.-+.+..+.+.+ .+++-++|+|++..... +-++ +..-..++.+|++|.+ ..+
T Consensus 86 --------~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKt-LEEPp~~~~fiL~~~~~~~l 156 (319)
T PRK08769 86 --------GDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKT-LEEPSPGRYLWLISAQPARL 156 (319)
T ss_pred --------cccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHH-hhCCCCCCeEEEEECChhhC
Confidence 00000000011222233332 25677999999987532 2121 2222345666666654 444
Q ss_pred cc---cCCceEEccCCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCCchHHHHHH
Q 001999 292 CW---QADDVIHVERLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGMPYMLKLIG 349 (984)
Q Consensus 292 ~~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~~~ 349 (984)
.. .-...+.+.+.+.+++...+.+. +. . +..+..++..++|.|+.+..+.
T Consensus 157 LpTIrSRCq~i~~~~~~~~~~~~~L~~~-~~----~---~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 157 PATIRSRCQRLEFKLPPAHEALAWLLAQ-GV----S---ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred chHHHhhheEeeCCCcCHHHHHHHHHHc-CC----C---hHHHHHHHHHcCCCHHHHHHHh
Confidence 43 66788999999999998888653 11 1 2236678999999998665443
No 211
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.18 E-value=0.083 Score=51.54 Aligned_cols=132 Identities=19% Similarity=0.225 Sum_probs=70.2
Q ss_pred chHHHHHHHHHHhccCCcc-EEEEEcCCCChHHHHHHHhhhhcccCC------------------CCCeEEEEEeCCC--
Q 001999 158 SHKEYVETLEKHLSSGGLK-KICICGPLGVGKTTIMENSHDSVGESG------------------RFDIIFWVNVNTD-- 216 (984)
Q Consensus 158 gr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~~~~~~~~~~------------------~F~~~~wv~vs~~-- 216 (984)
|.++..+.|.+.+..++++ .+-++|+.|+||+|+|......+--.. ...-..|+.-...
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 80 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK 80 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc
Confidence 5667778888888776655 579999999999999998444332101 1222333332221
Q ss_pred -CCHHHHHHHHHHHhccCccccchHHHHHHHHHHHcCCcEEEEEECCCCcc--chhhh--ccccCCCCcEEEEEcCCccc
Q 001999 217 -GNISDIQEIILERLKVNAKELDNAQRADNISKELKDKRYVLFLDGVSSEI--NFKEI--GIHDDHGRGKVVFACRSREF 291 (984)
Q Consensus 217 -~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~--~~~~~--~~~~~~~gs~ilvTTR~~~v 291 (984)
..++.+. ++.+.+.... ..+++-++|+||+.... ....+ .+..-..++.+|++|++..-
T Consensus 81 ~i~i~~ir-~i~~~~~~~~---------------~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~ 144 (162)
T PF13177_consen 81 SIKIDQIR-EIIEFLSLSP---------------SEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSK 144 (162)
T ss_dssp SBSHHHHH-HHHHHCTSS----------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGG
T ss_pred hhhHHHHH-HHHHHHHHHH---------------hcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHH
Confidence 2232222 3333332211 12467789999998753 23333 12244467888888877653
Q ss_pred -cc---cCCceEEccCCC
Q 001999 292 -CW---QADDVIHVERLS 305 (984)
Q Consensus 292 -~~---~~~~~~~l~~L~ 305 (984)
.. .-...+.+.+++
T Consensus 145 il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 145 ILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp S-HHHHTTSEEEEE----
T ss_pred ChHHHHhhceEEecCCCC
Confidence 32 566677776654
No 212
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.17 E-value=0.059 Score=66.46 Aligned_cols=168 Identities=15% Similarity=0.191 Sum_probs=90.5
Q ss_pred CCCCchHHHHHHHHHHhcc-------------CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHH
Q 001999 154 SKFPSHKEYVETLEKHLSS-------------GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNIS 220 (984)
Q Consensus 154 ~~~vgr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~ 220 (984)
+++.|.++.+++|.+++.- ...+.|.++|++|+||||||+....... ..| +.++..
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~--~~~-----i~i~~~---- 246 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAG--AYF-----ISINGP---- 246 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhC--CeE-----EEEecH----
Confidence 4578999999888777632 2346788999999999999999766654 333 222211
Q ss_pred HHHHHHHHHhccCccccchHHHHHHHHHHHcCCcEEEEEECCCCcc--------c-----hhhh--ccc-cCCCCcEEEE
Q 001999 221 DIQEIILERLKVNAKELDNAQRADNISKELKDKRYVLFLDGVSSEI--------N-----FKEI--GIH-DDHGRGKVVF 284 (984)
Q Consensus 221 ~i~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~--------~-----~~~~--~~~-~~~~gs~ilv 284 (984)
.+. .. ........+...+.........+|++|++.... . ...+ .+. ....+..++|
T Consensus 247 ~i~----~~----~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI 318 (733)
T TIGR01243 247 EIM----SK----YYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVI 318 (733)
T ss_pred HHh----cc----cccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEE
Confidence 111 00 000111222233333344667899999985421 0 0111 011 1223344454
Q ss_pred -EcCCcc-ccc------cCCceEEccCCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCCch
Q 001999 285 -ACRSRE-FCW------QADDVIHVERLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGMPY 343 (984)
Q Consensus 285 -TTR~~~-v~~------~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~GlPl 343 (984)
||.... +.. .....+.+...+.++-.++++....... ..+ ......+++.+.|.--
T Consensus 319 ~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~-l~~--d~~l~~la~~t~G~~g 382 (733)
T TIGR01243 319 GATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMP-LAE--DVDLDKLAEVTHGFVG 382 (733)
T ss_pred eecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCC-Ccc--ccCHHHHHHhCCCCCH
Confidence 443322 211 2245677888888888888876543221 111 1124667788887653
No 213
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.16 E-value=0.31 Score=53.89 Aligned_cols=85 Identities=20% Similarity=0.260 Sum_probs=48.8
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhhcccCCCC--CeEEEEEeCCCC--CHHHHHHHHHHHhccCccccch-HHHHHHHHH
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDSVGESGRF--DIIFWVNVNTDG--NISDIQEIILERLKVNAKELDN-AQRADNISK 248 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F--~~~~wv~vs~~~--~~~~i~~~i~~~l~~~~~~~~~-~~~~~~l~~ 248 (984)
+..++.++|+.|+||||++.+...+.. ..+ ..+..++ .+.+ ...+-++...+.++........ .++...+ .
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~--~~~G~~~V~lit-~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l-~ 211 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCV--MRFGASKVALLT-TDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLAL-A 211 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH--HhcCCCeEEEEe-cccccccHHHHHHHHHHHcCCceEecCCcccHHHHH-H
Confidence 457999999999999999999544432 222 3444554 3333 2344555556666654433222 3333333 3
Q ss_pred HHcCCcEEEEEECCC
Q 001999 249 ELKDKRYVLFLDGVS 263 (984)
Q Consensus 249 ~L~~kr~LlVlDdv~ 263 (984)
.+.++. +|++|..-
T Consensus 212 ~l~~~D-lVLIDTaG 225 (374)
T PRK14722 212 ELRNKH-MVLIDTIG 225 (374)
T ss_pred HhcCCC-EEEEcCCC
Confidence 345554 45588874
No 214
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.16 E-value=0.023 Score=58.32 Aligned_cols=88 Identities=17% Similarity=0.183 Sum_probs=52.5
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHHHHHhc---cCc---cccc--h-HHHH
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEIILERLK---VNA---KELD--N-AQRA 243 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~---~~~---~~~~--~-~~~~ 243 (984)
+...++.|+|++|+|||++|.+...... ..-..++|++... ++..++.+..-.... ... ...+ + ....
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~~--~~g~~v~yi~~e~-~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 86 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNAA--RQGKKVVYIDTEG-LSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAI 86 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEECCC-CCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHH
Confidence 3568999999999999999998444433 3346789998875 676665543321100 000 0001 1 2234
Q ss_pred HHHHHHHcC-CcEEEEEECCC
Q 001999 244 DNISKELKD-KRYVLFLDGVS 263 (984)
Q Consensus 244 ~~l~~~L~~-kr~LlVlDdv~ 263 (984)
..+.+.+.. +.-+||+|.+.
T Consensus 87 ~~l~~~~~~~~~~lvVIDSis 107 (209)
T TIGR02237 87 QKTSKFIDRDSASLVVVDSFT 107 (209)
T ss_pred HHHHHHHhhcCccEEEEeCcH
Confidence 445555543 45588888874
No 215
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.15 E-value=0.0057 Score=61.33 Aligned_cols=125 Identities=17% Similarity=0.185 Sum_probs=60.0
Q ss_pred chHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHH-hhhhcccCCCCCeEEEEEeCCC--CC----HHH-------HH
Q 001999 158 SHKEYVETLEKHLSSGGLKKICICGPLGVGKTTIMEN-SHDSVGESGRFDIIFWVNVNTD--GN----ISD-------IQ 223 (984)
Q Consensus 158 gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~-~~~~~~~~~~F~~~~wv~vs~~--~~----~~~-------i~ 223 (984)
.+..+-...++.|. ...++.+.|++|.|||.||.. ..+.+.. +.|+.++++.-.-. -+ +-. ..
T Consensus 4 p~~~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~v~~-g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~ 80 (205)
T PF02562_consen 4 PKNEEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALELVKE-GEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYL 80 (205)
T ss_dssp --SHHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHHHHT-TS-SEEEEEE-S--TT----SS---------TTT
T ss_pred CCCHHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHHHHh-CCCcEEEEEecCCCCccccccCCCCHHHHHHHHH
Confidence 34455556666666 567999999999999999998 4444432 78888887752111 01 011 11
Q ss_pred HHHHHHhccCccccchHHHHHH------HHHHHcCC---cEEEEEECCCCcc--chhhhccccCCCCcEEEEEc
Q 001999 224 EIILERLKVNAKELDNAQRADN------ISKELKDK---RYVLFLDGVSSEI--NFKEIGIHDDHGRGKVVFAC 286 (984)
Q Consensus 224 ~~i~~~l~~~~~~~~~~~~~~~------l~~~L~~k---r~LlVlDdv~~~~--~~~~~~~~~~~~gs~ilvTT 286 (984)
.-+.+.+..-.....-+.+... -..+++|+ ..+||+|++.+.. ++..+ +.-.+.|||||++=
T Consensus 81 ~p~~d~l~~~~~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~i-lTR~g~~skii~~G 153 (205)
T PF02562_consen 81 RPIYDALEELFGKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMI-LTRIGEGSKIIITG 153 (205)
T ss_dssp HHHHHHHTTTS-TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHH-HTTB-TT-EEEEEE
T ss_pred HHHHHHHHHHhChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHH-HcccCCCcEEEEec
Confidence 1122222111110000111100 01234554 4699999998753 55555 33456789999883
No 216
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.12 E-value=0.014 Score=58.03 Aligned_cols=36 Identities=25% Similarity=0.338 Sum_probs=29.2
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEE
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWV 211 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv 211 (984)
...+|.++|+.|+||||+|+....... ..+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~--~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLK--LKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHH--HcCCcEEEE
Confidence 456999999999999999999777776 566566655
No 217
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.11 E-value=0.11 Score=63.98 Aligned_cols=165 Identities=17% Similarity=0.236 Sum_probs=92.4
Q ss_pred CCCCchHHHHHHHHHHhcc-------------CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHH
Q 001999 154 SKFPSHKEYVETLEKHLSS-------------GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNIS 220 (984)
Q Consensus 154 ~~~vgr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~ 220 (984)
.++.|.+..++.|.+.+.- ...+-|.++|++|+|||++|+....... ..| +.+.. .
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~--~~f-----i~v~~----~ 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESG--ANF-----IAVRG----P 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC--CCE-----EEEeh----H
Confidence 4567888888777666531 2345688999999999999999777765 444 22221 1
Q ss_pred HHHHHHHHHhccCccccchHHHHHHHHH-HHcCCcEEEEEECCCCcc---------c-----hhhh--ccc--cCCCCcE
Q 001999 221 DIQEIILERLKVNAKELDNAQRADNISK-ELKDKRYVLFLDGVSSEI---------N-----FKEI--GIH--DDHGRGK 281 (984)
Q Consensus 221 ~i~~~i~~~l~~~~~~~~~~~~~~~l~~-~L~~kr~LlVlDdv~~~~---------~-----~~~~--~~~--~~~~gs~ 281 (984)
++ +.. ....+ +.....+.. .-+..+.+|++|++.... . ...+ .+. ....+--
T Consensus 522 ~l----~~~----~vGes-e~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~ 592 (733)
T TIGR01243 522 EI----LSK----WVGES-EKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVV 592 (733)
T ss_pred HH----hhc----ccCcH-HHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEE
Confidence 11 111 01111 222233332 234567999999985320 0 0111 011 1223445
Q ss_pred EEEEcCCccccc-------cCCceEEccCCChHHHHHHHHHHhCCCC-CCCcchHHHHHHHHHHcCCCc
Q 001999 282 VVFACRSREFCW-------QADDVIHVERLSPREAKKLFWEVVGVNL-KKNPDIEQEADSIVEECGGMP 342 (984)
Q Consensus 282 ilvTTR~~~v~~-------~~~~~~~l~~L~~~~~~~Lf~~~~~~~~-~~~~~l~~~~~~I~~~c~GlP 342 (984)
||.||....... .....+.++..+.++-.++|+.+..... ....+ ...+++.+.|.-
T Consensus 593 vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 593 VIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVD----LEELAEMTEGYT 657 (733)
T ss_pred EEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHcCCCC
Confidence 566665544332 3456788888898888899987654331 12222 345667777754
No 218
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.10 E-value=0.043 Score=68.52 Aligned_cols=60 Identities=18% Similarity=0.314 Sum_probs=43.1
Q ss_pred CCCCchHHHHHHHHHHhccC---------CccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCC
Q 001999 154 SKFPSHKEYVETLEKHLSSG---------GLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNT 215 (984)
Q Consensus 154 ~~~vgr~~~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~ 215 (984)
..++|.+..++.+.+.+... ...++.++|+.|+|||++|+...+... ..-...+.+..+.
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~--~~~~~~i~~d~s~ 633 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLF--DDEDAMVRIDMSE 633 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhc--CCCCcEEEEechh
Confidence 56899999999998888641 145688999999999999999666553 2223344455444
No 219
>PRK06921 hypothetical protein; Provisional
Probab=96.09 E-value=0.019 Score=60.99 Aligned_cols=38 Identities=16% Similarity=0.274 Sum_probs=28.2
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhhcccCCC-CCeEEEEEe
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDSVGESGR-FDIIFWVNV 213 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~-F~~~~wv~v 213 (984)
....+.++|..|+|||+||.+....+. .. -..+++++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~--~~~g~~v~y~~~ 154 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELM--RKKGVPVLYFPF 154 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHh--hhcCceEEEEEH
Confidence 467899999999999999999655554 32 345667764
No 220
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.08 E-value=0.19 Score=57.45 Aligned_cols=25 Identities=32% Similarity=0.454 Sum_probs=21.0
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhh
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDS 198 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~ 198 (984)
...+|+|+|++|+||||++.+....
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~ 373 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQR 373 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999884433
No 221
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.08 E-value=0.12 Score=56.87 Aligned_cols=145 Identities=12% Similarity=0.143 Sum_probs=80.8
Q ss_pred CCCc-hHHHHHHHHHHhccCCc-cEEEEEcCCCChHHHHHHHhhhhcccCC--------------------CCCeEEEEE
Q 001999 155 KFPS-HKEYVETLEKHLSSGGL-KKICICGPLGVGKTTIMENSHDSVGESG--------------------RFDIIFWVN 212 (984)
Q Consensus 155 ~~vg-r~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~~~~~~~~~~--------------------~F~~~~wv~ 212 (984)
.++| .+..++.+.+.+..+++ ..+-++|+.|+||||+|+...+.+--.. |.|......
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~ 85 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAP 85 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEecc
Confidence 3566 67778888888877654 4568999999999999998444431001 222221111
Q ss_pred eCCCCCHHHHHHHHHHHhccCccccchHHHHHHHHHHHcCCcEEEEEECCCCccc--hhhh--ccccCCCCcEEEEEcCC
Q 001999 213 VNTDGNISDIQEIILERLKVNAKELDNAQRADNISKELKDKRYVLFLDGVSSEIN--FKEI--GIHDDHGRGKVVFACRS 288 (984)
Q Consensus 213 vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~--~~~~--~~~~~~~gs~ilvTTR~ 288 (984)
.+....++.+. ++.+.+... -..+++-++|+|++..... ...+ .+..-..++.+|++|.+
T Consensus 86 ~~~~i~id~ir-~l~~~~~~~---------------~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~ 149 (329)
T PRK08058 86 DGQSIKKDQIR-YLKEEFSKS---------------GVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTEN 149 (329)
T ss_pred ccccCCHHHHH-HHHHHHhhC---------------CcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCC
Confidence 11111111111 111111100 0235666899999876432 2222 12223345666666654
Q ss_pred c-cccc---cCCceEEccCCChHHHHHHHHH
Q 001999 289 R-EFCW---QADDVIHVERLSPREAKKLFWE 315 (984)
Q Consensus 289 ~-~v~~---~~~~~~~l~~L~~~~~~~Lf~~ 315 (984)
. .+.. .....+++.+++.++..+.+.+
T Consensus 150 ~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 150 KHQILPTILSRCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred hHhCcHHHHhhceeeeCCCCCHHHHHHHHHH
Confidence 3 3333 6778999999999999887765
No 222
>PHA00729 NTP-binding motif containing protein
Probab=96.03 E-value=0.019 Score=58.35 Aligned_cols=35 Identities=26% Similarity=0.336 Sum_probs=27.2
Q ss_pred HHHHHhccCCccEEEEEcCCCChHHHHHHHhhhhc
Q 001999 165 TLEKHLSSGGLKKICICGPLGVGKTTIMENSHDSV 199 (984)
Q Consensus 165 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~ 199 (984)
++++.+...+...|.|.|.+|+||||||....+++
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 45555555566689999999999999999966554
No 223
>PTZ00494 tuzin-like protein; Provisional
Probab=95.98 E-value=1.5 Score=48.59 Aligned_cols=155 Identities=12% Similarity=0.123 Sum_probs=101.4
Q ss_pred CCCCCCchHHHHHHHHHHhcc---CCccEEEEEcCCCChHHHHHHH--hhhhcccCCCCCeEEEEEeCCCCCHHHHHHHH
Q 001999 152 HASKFPSHKEYVETLEKHLSS---GGLKKICICGPLGVGKTTIMEN--SHDSVGESGRFDIIFWVNVNTDGNISDIQEII 226 (984)
Q Consensus 152 ~~~~~vgr~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~--~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i 226 (984)
....+|.|+.+-.-+.+.|.. .+.+++.+.|.-|.||++|.+. ..+.+ ..++|.|...-| -++.|
T Consensus 369 ~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE~~-------paV~VDVRg~ED---tLrsV 438 (664)
T PTZ00494 369 AEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVEGV-------ALVHVDVGGTED---TLRSV 438 (664)
T ss_pred ccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHcCC-------CeEEEEecCCcc---hHHHH
Confidence 456688998887776666654 6889999999999999999998 33333 367888876544 56778
Q ss_pred HHHhccCccccch------HHHHHHHHHHHcCCcEEEEEECCCCccchhhh-----ccccCCCCcEEEEEcCCccccc--
Q 001999 227 LERLKVNAKELDN------AQRADNISKELKDKRYVLFLDGVSSEINFKEI-----GIHDDHGRGKVVFACRSREFCW-- 293 (984)
Q Consensus 227 ~~~l~~~~~~~~~------~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~-----~~~~~~~gs~ilvTTR~~~v~~-- 293 (984)
.++++.+.-+.=. .+...+-+....|+.-+||+-= .+...+..+ .+....+-|.|++---.+.+..
T Consensus 439 VKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkL-REGssL~RVYnE~vaLacDrRlCHvv~EVplESLT~~n 517 (664)
T PTZ00494 439 VRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRL-REGSDLGRVYGEVVSLVSDCQACHIVLAVPMKALTPLN 517 (664)
T ss_pred HHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEe-ccCCcHHHHHHHHHHHHccchhheeeeechHhhhchhh
Confidence 8888765432111 2333333344557777777652 222222222 3445667788887655444422
Q ss_pred ---cCCceEEccCCChHHHHHHHHHHh
Q 001999 294 ---QADDVIHVERLSPREAKKLFWEVV 317 (984)
Q Consensus 294 ---~~~~~~~l~~L~~~~~~~Lf~~~~ 317 (984)
..-+.|-+++++.++|...-++..
T Consensus 518 ~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 518 VSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred ccCccceeEecCCcCHHHHHHHHhccc
Confidence 455679999999999988877654
No 224
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=95.98 E-value=0.0053 Score=56.75 Aligned_cols=23 Identities=35% Similarity=0.612 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHhhhhc
Q 001999 177 KICICGPLGVGKTTIMENSHDSV 199 (984)
Q Consensus 177 vi~I~G~gGiGKTtLa~~~~~~~ 199 (984)
||.|.|++|+||||+|+...++.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999977664
No 225
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.95 E-value=0.034 Score=59.18 Aligned_cols=129 Identities=16% Similarity=0.209 Sum_probs=74.0
Q ss_pred CchHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHH-hhhhcccCCCCCeEEE----EEeCCCC---------CHHHH
Q 001999 157 PSHKEYVETLEKHLSSGGLKKICICGPLGVGKTTIMEN-SHDSVGESGRFDIIFW----VNVNTDG---------NISDI 222 (984)
Q Consensus 157 vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~-~~~~~~~~~~F~~~~w----v~vs~~~---------~~~~i 222 (984)
-+|..+..--+++|.++.+..|.+.|.+|.|||.||-+ --+.+-+.+.|..++- |.+.+.. .+.-.
T Consensus 227 ~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeKm~PW 306 (436)
T COG1875 227 RPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEEKMGPW 306 (436)
T ss_pred CcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhhhccch
Confidence 35666666677899999999999999999999999988 3333322355544332 2233321 11222
Q ss_pred HHHHHHHhc---cCccccchHHHHHHH---------HHHHcCC---cEEEEEECCCCcc--chhhhccccCCCCcEEEEE
Q 001999 223 QEIILERLK---VNAKELDNAQRADNI---------SKELKDK---RYVLFLDGVSSEI--NFKEIGIHDDHGRGKVVFA 285 (984)
Q Consensus 223 ~~~i~~~l~---~~~~~~~~~~~~~~l---------~~~L~~k---r~LlVlDdv~~~~--~~~~~~~~~~~~gs~ilvT 285 (984)
.+.|.+-+. ...... ...+...+ ..+++|+ .-+||+|...+.. +...+ +...+.||||+.|
T Consensus 307 mq~i~DnLE~L~~~~~~~-~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTpheikTi-ltR~G~GsKIVl~ 384 (436)
T COG1875 307 MQAIFDNLEVLFSPNEPG-DRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPHELKTI-LTRAGEGSKIVLT 384 (436)
T ss_pred HHHHHhHHHHHhcccccc-hHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHHHHHHH-HHhccCCCEEEEc
Confidence 333333321 111111 11111111 1233454 4589999998853 34443 4567889999988
Q ss_pred cC
Q 001999 286 CR 287 (984)
Q Consensus 286 TR 287 (984)
--
T Consensus 385 gd 386 (436)
T COG1875 385 GD 386 (436)
T ss_pred CC
Confidence 53
No 226
>PRK09183 transposase/IS protein; Provisional
Probab=95.89 E-value=0.025 Score=59.91 Aligned_cols=25 Identities=32% Similarity=0.406 Sum_probs=20.2
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhh
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDS 198 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~ 198 (984)
....+.|+|+.|+|||+||......
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~ 125 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYE 125 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 3456789999999999999995433
No 227
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=95.89 E-value=0.064 Score=55.82 Aligned_cols=88 Identities=11% Similarity=0.149 Sum_probs=52.9
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhcccCCCC------CeEEEEEeCCCCCHHHHHHHHHHHhccCcc---------c-
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSVGESGRF------DIIFWVNVNTDGNISDIQEIILERLKVNAK---------E- 236 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F------~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~---------~- 236 (984)
....++.|+|.+|+|||+||.+...... ..- ..++|++....++..++.+ +.+..+.... .
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~~~~--~~~~~~g~~~~v~yi~~e~~~~~~rl~~-~~~~~~~~~~~~~~~i~~~~~ 93 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVEAQ--LPGELGGLEGKVVYIDTEGAFRPERLVQ-LAVRFGLDPEEVLDNIYVARP 93 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHHHhh--cccccCCCcceEEEEecCCCCCHHHHHH-HHHHhccchhhhhccEEEEeC
Confidence 4578999999999999999999433332 222 4678999888777665543 3333221110 0
Q ss_pred cchHHHHHHHHHHHc----CCcEEEEEECCC
Q 001999 237 LDNAQRADNISKELK----DKRYVLFLDGVS 263 (984)
Q Consensus 237 ~~~~~~~~~l~~~L~----~kr~LlVlDdv~ 263 (984)
.+.++....+.+..+ .+.-++|+|.+.
T Consensus 94 ~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 94 YNGEQQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred CCHHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 111344444444332 345588999875
No 228
>PRK06526 transposase; Provisional
Probab=95.89 E-value=0.014 Score=61.28 Aligned_cols=74 Identities=16% Similarity=0.256 Sum_probs=40.8
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHHHHHhccCccccchHHHHHHHHHHHcCC
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEIILERLKVNAKELDNAQRADNISKELKDK 253 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~k 253 (984)
+..-+.++|++|+|||+||......... ..+. +.|+ +..++...+..... .......+.+ + .+
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~-~g~~-v~f~------t~~~l~~~l~~~~~-------~~~~~~~l~~-l-~~ 159 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQ-AGHR-VLFA------TAAQWVARLAAAHH-------AGRLQAELVK-L-GR 159 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHH-CCCc-hhhh------hHHHHHHHHHHHHh-------cCcHHHHHHH-h-cc
Confidence 3456899999999999999994333320 2332 3333 33445555443311 0111222322 2 23
Q ss_pred cEEEEEECCCC
Q 001999 254 RYVLFLDGVSS 264 (984)
Q Consensus 254 r~LlVlDdv~~ 264 (984)
.-+||+||+..
T Consensus 160 ~dlLIIDD~g~ 170 (254)
T PRK06526 160 YPLLIVDEVGY 170 (254)
T ss_pred CCEEEEccccc
Confidence 46899999964
No 229
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.88 E-value=0.32 Score=55.31 Aligned_cols=83 Identities=16% Similarity=0.210 Sum_probs=42.4
Q ss_pred ccEEEEEcCCCChHHHHHHHhh-hhc-ccCCCCCeEEEEEeCCCCCH--HHHHHHHHHHhccCccccch-HHHHHHHHHH
Q 001999 175 LKKICICGPLGVGKTTIMENSH-DSV-GESGRFDIIFWVNVNTDGNI--SDIQEIILERLKVNAKELDN-AQRADNISKE 249 (984)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~~~-~~~-~~~~~F~~~~wv~vs~~~~~--~~i~~~i~~~l~~~~~~~~~-~~~~~~l~~~ 249 (984)
.++++++|++|+||||++.... ... . ..-..+..|+.. .+.. .+-++...+.++........ +++...+.+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~--~~g~~V~li~~D-~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~- 296 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALL--YGKKKVALITLD-TYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQ- 296 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHh--cCCCeEEEEECC-ccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHH-
Confidence 4699999999999999988833 222 1 222345555532 2221 11222223334433322112 444444443
Q ss_pred HcCCcEEEEEECC
Q 001999 250 LKDKRYVLFLDGV 262 (984)
Q Consensus 250 L~~kr~LlVlDdv 262 (984)
+. ..=+||+|..
T Consensus 297 ~~-~~DlVlIDt~ 308 (424)
T PRK05703 297 LR-DCDVILIDTA 308 (424)
T ss_pred hC-CCCEEEEeCC
Confidence 33 3457788865
No 230
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=95.85 E-value=0.026 Score=69.29 Aligned_cols=102 Identities=15% Similarity=0.269 Sum_probs=58.8
Q ss_pred CCCCchHHHHHHHHHHhcc-------C--CccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHH
Q 001999 154 SKFPSHKEYVETLEKHLSS-------G--GLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQE 224 (984)
Q Consensus 154 ~~~vgr~~~~~~l~~~L~~-------~--~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~ 224 (984)
..++|.++.++.+.+.+.. + ...++.++|+.|+|||+||+...+... .. .+.++.+.-.+...
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~--~~---~~~~d~se~~~~~~--- 525 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG--VH---LERFDMSEYMEKHT--- 525 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc--CC---eEEEeCchhhhccc---
Confidence 4578999999988887753 1 234688999999999999999777664 32 34455444222111
Q ss_pred HHHHHhccCccccchHHHHHHHHHHHcCC-cEEEEEECCCCc
Q 001999 225 IILERLKVNAKELDNAQRADNISKELKDK-RYVLFLDGVSSE 265 (984)
Q Consensus 225 ~i~~~l~~~~~~~~~~~~~~~l~~~L~~k-r~LlVlDdv~~~ 265 (984)
+..-++.... .-..+....+.+.++.+ .-+++||+++..
T Consensus 526 -~~~lig~~~g-yvg~~~~~~l~~~~~~~p~~VvllDEieka 565 (731)
T TIGR02639 526 -VSRLIGAPPG-YVGFEQGGLLTEAVRKHPHCVLLLDEIEKA 565 (731)
T ss_pred -HHHHhcCCCC-CcccchhhHHHHHHHhCCCeEEEEechhhc
Confidence 1111221111 00111122334444434 459999999864
No 231
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.85 E-value=0.024 Score=61.32 Aligned_cols=113 Identities=12% Similarity=0.194 Sum_probs=65.5
Q ss_pred chHHHHHHHHHHhcc----CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHHHHHhccC
Q 001999 158 SHKEYVETLEKHLSS----GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEIILERLKVN 233 (984)
Q Consensus 158 gr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~ 233 (984)
++........+++.. ...+-+.++|..|+|||.||......+.. ..+ .+.+++++ .++.++.......
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~-~g~-~v~~~~~~------~l~~~lk~~~~~~ 206 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAK-KGV-SSTLLHFP------EFIRELKNSISDG 206 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHH-cCC-CEEEEEHH------HHHHHHHHHHhcC
Confidence 565566656666653 24578999999999999999995544431 333 34566543 4555555544311
Q ss_pred ccccchHHHHHHHHHHHcCCcEEEEEECCCCc--cchhh--hccc---cC-CCCcEEEEEcC
Q 001999 234 AKELDNAQRADNISKELKDKRYVLFLDGVSSE--INFKE--IGIH---DD-HGRGKVVFACR 287 (984)
Q Consensus 234 ~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~--~~~~---~~-~~gs~ilvTTR 287 (984)
.....+ +.+ .+-=||||||+..+ .+|.. +..+ .. ..+-.+|+||-
T Consensus 207 -------~~~~~l-~~l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSN 259 (306)
T PRK08939 207 -------SVKEKI-DAV-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSN 259 (306)
T ss_pred -------cHHHHH-HHh-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 111122 222 35668999999643 45643 3222 11 24567888874
No 232
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=95.84 E-value=0.12 Score=60.74 Aligned_cols=46 Identities=24% Similarity=0.352 Sum_probs=37.9
Q ss_pred CCCCCchHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHhhhh
Q 001999 153 ASKFPSHKEYVETLEKHLSSGGLKKICICGPLGVGKTTIMENSHDS 198 (984)
Q Consensus 153 ~~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~ 198 (984)
-.+++|.+..++.+...+......-+.|+|..|+|||++|+..++.
T Consensus 64 f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 64 FDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred HHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999988776655566789999999999999985543
No 233
>CHL00195 ycf46 Ycf46; Provisional
Probab=95.81 E-value=0.15 Score=58.85 Aligned_cols=168 Identities=12% Similarity=0.113 Sum_probs=87.6
Q ss_pred CCCCchHHHHHHHHHHh---cc-------CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHH
Q 001999 154 SKFPSHKEYVETLEKHL---SS-------GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQ 223 (984)
Q Consensus 154 ~~~vgr~~~~~~l~~~L---~~-------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~ 223 (984)
+++.|.+..++.+.+.. .. ...+-|-++|++|+|||.+|+....... ..| +-+..+. +.
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~--~~~---~~l~~~~------l~ 296 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQ--LPL---LRLDVGK------LF 296 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC--CCE---EEEEhHH------hc
Confidence 45678776666554421 11 3456789999999999999999776655 333 1122111 11
Q ss_pred HHHHHHhccCccccchHHHHHHHHHHHcCCcEEEEEECCCCcc-------c--h-hhh---c---cccCCCCcEEEEEcC
Q 001999 224 EIILERLKVNAKELDNAQRADNISKELKDKRYVLFLDGVSSEI-------N--F-KEI---G---IHDDHGRGKVVFACR 287 (984)
Q Consensus 224 ~~i~~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~-------~--~-~~~---~---~~~~~~gs~ilvTTR 287 (984)
. ...+.++..+...+...-...+++|++|++.... + . ..+ . +.....+--||.||.
T Consensus 297 ----~----~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN 368 (489)
T CHL00195 297 ----G----GIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATAN 368 (489)
T ss_pred ----c----cccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecC
Confidence 0 0001111112222222223578999999986421 0 0 000 0 112223334555665
Q ss_pred Cccccc-------cCCceEEccCCChHHHHHHHHHHhCCCC-CCCcchHHHHHHHHHHcCCCc
Q 001999 288 SREFCW-------QADDVIHVERLSPREAKKLFWEVVGVNL-KKNPDIEQEADSIVEECGGMP 342 (984)
Q Consensus 288 ~~~v~~-------~~~~~~~l~~L~~~~~~~Lf~~~~~~~~-~~~~~l~~~~~~I~~~c~GlP 342 (984)
...... .....+.++.-+.++-.++|+.+..... ....+ .-...+++.+.|.-
T Consensus 369 ~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~--~dl~~La~~T~GfS 429 (489)
T CHL00195 369 NIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKK--YDIKKLSKLSNKFS 429 (489)
T ss_pred ChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccc--cCHHHHHhhcCCCC
Confidence 443221 3456788888888888999988775431 11111 12345666666643
No 234
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.80 E-value=0.021 Score=62.27 Aligned_cols=111 Identities=15% Similarity=0.202 Sum_probs=57.5
Q ss_pred HHHHHHHHhcc--CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHHHHHhccCccccch
Q 001999 162 YVETLEKHLSS--GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEIILERLKVNAKELDN 239 (984)
Q Consensus 162 ~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~ 239 (984)
.++...+++.. ....-+.++|..|+|||+||.+....+- ..-..++++++.+ +...+...-. . . .
T Consensus 168 ~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l~--~~g~~V~y~t~~~------l~~~l~~~~~-~--~--~ 234 (329)
T PRK06835 168 ILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKELL--DRGKSVIYRTADE------LIEILREIRF-N--N--D 234 (329)
T ss_pred HHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHH--HCCCeEEEEEHHH------HHHHHHHHHh-c--c--c
Confidence 33334445442 2337799999999999999999555543 2223566775433 3333332111 0 0 0
Q ss_pred HHHHHHHHHHHcCCcEEEEEECCCCc--cchhh-hccc----cCCCCcEEEEEcC
Q 001999 240 AQRADNISKELKDKRYVLFLDGVSSE--INFKE-IGIH----DDHGRGKVVFACR 287 (984)
Q Consensus 240 ~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~-~~~~----~~~~gs~ilvTTR 287 (984)
.+.... .+.+. +-=|||+||+... .+|.. ..+. .-..+..+||||.
T Consensus 235 ~~~~~~-~~~l~-~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSN 287 (329)
T PRK06835 235 KELEEV-YDLLI-NCDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTN 287 (329)
T ss_pred hhHHHH-HHHhc-cCCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECC
Confidence 111111 22233 2358999999543 23322 1122 1223557888885
No 235
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.78 E-value=0.03 Score=58.91 Aligned_cols=89 Identities=18% Similarity=0.333 Sum_probs=51.7
Q ss_pred chHHHHHHHH---HHhccCCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHHHHHhccCc
Q 001999 158 SHKEYVETLE---KHLSSGGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEIILERLKVNA 234 (984)
Q Consensus 158 gr~~~~~~l~---~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~ 234 (984)
++...+..+. +++. +..-+.++|.+|+|||.||.+....+- ...+ .+.+++ ..++..++......
T Consensus 87 ~~~~~l~~~~~~~~~~~--~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~-sv~f~~------~~el~~~Lk~~~~~-- 154 (254)
T COG1484 87 IDKKALEDLASLVEFFE--RGENLVLLGPPGVGKTHLAIAIGNELL-KAGI-SVLFIT------APDLLSKLKAAFDE-- 154 (254)
T ss_pred hhHHHHHHHHHHHHHhc--cCCcEEEECCCCCcHHHHHHHHHHHHH-HcCC-eEEEEE------HHHHHHHHHHHHhc--
Confidence 3444444443 3443 678899999999999999999555443 1333 355554 44566666655442
Q ss_pred cccchHHHHHHHHHHHcCCcEEEEEECCCC
Q 001999 235 KELDNAQRADNISKELKDKRYVLFLDGVSS 264 (984)
Q Consensus 235 ~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~ 264 (984)
.....+|.+.+ .+-=||||||+-.
T Consensus 155 -----~~~~~~l~~~l-~~~dlLIiDDlG~ 178 (254)
T COG1484 155 -----GRLEEKLLREL-KKVDLLIIDDIGY 178 (254)
T ss_pred -----CchHHHHHHHh-hcCCEEEEecccC
Confidence 11122222222 2344899999854
No 236
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=95.73 E-value=0.053 Score=62.01 Aligned_cols=182 Identities=16% Similarity=0.137 Sum_probs=104.0
Q ss_pred CCCCCchHHHHHHHHHHhccCC-ccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHHHHHhc
Q 001999 153 ASKFPSHKEYVETLEKHLSSGG-LKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEIILERLK 231 (984)
Q Consensus 153 ~~~~vgr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~ 231 (984)
-++++|-+.....|.+.+..++ ..-....|+-|+||||+|+-..+.+- |.-+ .....+..-..-++|...-.
T Consensus 15 F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalN------C~~~-~~~ePC~~C~~Ck~I~~g~~ 87 (515)
T COG2812 15 FDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALN------CENG-PTAEPCGKCISCKEINEGSL 87 (515)
T ss_pred HHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhc------CCCC-CCCCcchhhhhhHhhhcCCc
Confidence 4678999999999999987643 44566789999999999998444432 0000 11112222222233322200
Q ss_pred cCc---cccch--HHHHHHHHHHH-----cCCcEEEEEECCCCc--cchhhhc--cccCCCCcE-EEEEcCCccccc---
Q 001999 232 VNA---KELDN--AQRADNISKEL-----KDKRYVLFLDGVSSE--INFKEIG--IHDDHGRGK-VVFACRSREFCW--- 293 (984)
Q Consensus 232 ~~~---~~~~~--~~~~~~l~~~L-----~~kr~LlVlDdv~~~--~~~~~~~--~~~~~~gs~-ilvTTR~~~v~~--- 293 (984)
.+. +..+. -+-++.|.+.. ++|--+.|+|.|.-. ..|..+. +..-...-+ |+.||--..+..
T Consensus 88 ~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TIl 167 (515)
T COG2812 88 IDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTIL 167 (515)
T ss_pred ccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhhh
Confidence 000 01111 12222333332 356668999999753 3454441 111122334 444555566655
Q ss_pred cCCceEEccCCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCCch
Q 001999 294 QADDVIHVERLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGMPY 343 (984)
Q Consensus 294 ~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~GlPl 343 (984)
..++.|.++.++.++-...+...+... .-.-.++...-|++..+|...
T Consensus 168 SRcq~f~fkri~~~~I~~~L~~i~~~E--~I~~e~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 168 SRCQRFDFKRLDLEEIAKHLAAILDKE--GINIEEDALSLIARAAEGSLR 215 (515)
T ss_pred hccccccccCCCHHHHHHHHHHHHHhc--CCccCHHHHHHHHHHcCCChh
Confidence 778899999999999988888887654 112224466677777777543
No 237
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.72 E-value=0.041 Score=53.65 Aligned_cols=40 Identities=23% Similarity=0.367 Sum_probs=29.1
Q ss_pred EEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCC
Q 001999 177 KICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGN 218 (984)
Q Consensus 177 vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~ 218 (984)
++.|+|.+|+||||+++....... ..-..++|+.......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIA--TKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHH--hcCCEEEEEECCcchH
Confidence 468999999999999999544443 3335677887766543
No 238
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.71 E-value=0.4 Score=55.38 Aligned_cols=51 Identities=22% Similarity=0.320 Sum_probs=37.9
Q ss_pred CCCCCchHHHHHHHHHHhcc-------------CCccEEEEEcCCCChHHHHHHHhhhhcccCCCC
Q 001999 153 ASKFPSHKEYVETLEKHLSS-------------GGLKKICICGPLGVGKTTIMENSHDSVGESGRF 205 (984)
Q Consensus 153 ~~~~vgr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F 205 (984)
.+++-|.++-+.+|-+.+.- ...+-|-.+|++|+|||++|+......+ ..|
T Consensus 433 W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~--~nF 496 (693)
T KOG0730|consen 433 WDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAG--MNF 496 (693)
T ss_pred hhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhc--CCe
Confidence 34556677766666555432 4578899999999999999999777766 555
No 239
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=95.69 E-value=0.049 Score=57.09 Aligned_cols=91 Identities=16% Similarity=0.199 Sum_probs=53.8
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhcccCCC----CCeEEEEEeCCCCCHHHHHHHHHHHhccCccc----------cc
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSVGESGR----FDIIFWVNVNTDGNISDIQEIILERLKVNAKE----------LD 238 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~----F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~----------~~ 238 (984)
....++.|+|.+|+|||++|.+....+..... -..++|++....++..++.+ +++..+..... .+
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~-~~~~~~~~~~~~~~~i~~~~~~~ 95 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQ-IAERFGLDPEEVLDNIYVARAYN 95 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHH-HHHHhccChHhHhcCEEEEecCC
Confidence 35689999999999999999994322221121 36799999888777655543 33333221110 01
Q ss_pred h---HHHHHHHHHHHc-C-CcEEEEEECCCC
Q 001999 239 N---AQRADNISKELK-D-KRYVLFLDGVSS 264 (984)
Q Consensus 239 ~---~~~~~~l~~~L~-~-kr~LlVlDdv~~ 264 (984)
. .+....+.+.+. . +--+||+|-+..
T Consensus 96 ~~~l~~~l~~l~~~l~~~~~~~liVIDSis~ 126 (235)
T cd01123 96 SDHQLQLLEELEAILIESSRIKLVIVDSVTA 126 (235)
T ss_pred HHHHHHHHHHHHHHHhhcCCeeEEEEeCcHH
Confidence 1 222334444443 3 567888888753
No 240
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.68 E-value=0.36 Score=56.50 Aligned_cols=164 Identities=16% Similarity=0.230 Sum_probs=94.7
Q ss_pred CCCCCchHHHHHHHHHHhcc------------CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHH
Q 001999 153 ASKFPSHKEYVETLEKHLSS------------GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNIS 220 (984)
Q Consensus 153 ~~~~vgr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~ 220 (984)
.+++-|.++.+.+|.+-+.- .+..-|-++|++|.|||-+|++++.... .-|++|-.+
T Consensus 671 WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcs-------L~FlSVKGP---- 739 (953)
T KOG0736|consen 671 WDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECS-------LNFLSVKGP---- 739 (953)
T ss_pred hhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhce-------eeEEeecCH----
Confidence 45677899999999887642 2366889999999999999999887765 445655442
Q ss_pred HHHHHHHHHhccCccccchHHHHHHHHHHHcCCcEEEEEECCCCcc-----------ch--------hhh-cccc-CCCC
Q 001999 221 DIQEIILERLKVNAKELDNAQRADNISKELKDKRYVLFLDGVSSEI-----------NF--------KEI-GIHD-DHGR 279 (984)
Q Consensus 221 ~i~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~-----------~~--------~~~-~~~~-~~~g 279 (984)
+++..-. | .+++...+...+.=.-++|+|.+|.+++.. .. .++ ++.+ ...+
T Consensus 740 ELLNMYV---G-----qSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~ 811 (953)
T KOG0736|consen 740 ELLNMYV---G-----QSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQD 811 (953)
T ss_pred HHHHHHh---c-----chHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCc
Confidence 2222111 1 112333333333334689999999997521 11 222 3333 3333
Q ss_pred cEEEEEcCCccccc-------cCCceEEccCCChHHHHHHHHHHhCCC--CCCCcchHHHHHHHHHHcC
Q 001999 280 GKVVFACRSREFCW-------QADDVIHVERLSPREAKKLFWEVVGVN--LKKNPDIEQEADSIVEECG 339 (984)
Q Consensus 280 s~ilvTTR~~~v~~-------~~~~~~~l~~L~~~~~~~Lf~~~~~~~--~~~~~~l~~~~~~I~~~c~ 339 (984)
-=||=+|-..+... ..++-..+++=+.+++..=.-+..-.. .+.+-++ .+|+++|.
T Consensus 812 VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL----~eiAk~cp 876 (953)
T KOG0736|consen 812 VFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDL----VEIAKKCP 876 (953)
T ss_pred eEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCH----HHHHhhCC
Confidence 34454555555433 456677788777776654433332222 1122333 45777775
No 241
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=95.67 E-value=0.048 Score=67.68 Aligned_cols=47 Identities=19% Similarity=0.297 Sum_probs=37.6
Q ss_pred CCCCchHHHHHHHHHHhcc---------CCccEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 154 SKFPSHKEYVETLEKHLSS---------GGLKKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 154 ~~~vgr~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
..++|.+..++.+.+.+.. ....++.++|+.|+|||.+|+...+.+-
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~ 621 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLY 621 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5689999999999888742 1245789999999999999999655553
No 242
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.66 E-value=0.0068 Score=61.56 Aligned_cols=37 Identities=24% Similarity=0.249 Sum_probs=15.9
Q ss_pred hcCCCccEEeccCC--CCc-cCCcchhcccccCeEecCCC
Q 001999 541 EYMCHLQLLDLHDT--SIR-CLPPSISRLINLNALFLRSC 577 (984)
Q Consensus 541 ~~l~~Lr~L~L~~~--~i~-~lp~~i~~l~~L~~L~L~~c 577 (984)
..+++|+.|+++.| .+. .++-..-++++|++|++++|
T Consensus 62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N 101 (260)
T KOG2739|consen 62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN 101 (260)
T ss_pred CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC
Confidence 33445555555555 222 22222333355555555543
No 243
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.66 E-value=0.1 Score=57.67 Aligned_cols=137 Identities=15% Similarity=0.130 Sum_probs=82.8
Q ss_pred CCCchHHHHHHHHHHhcc-CCccE-EEEEcCCCChHHHHHHHhhhhcccCC-------------------CCCeEEEEEe
Q 001999 155 KFPSHKEYVETLEKHLSS-GGLKK-ICICGPLGVGKTTIMENSHDSVGESG-------------------RFDIIFWVNV 213 (984)
Q Consensus 155 ~~vgr~~~~~~l~~~L~~-~~~~v-i~I~G~gGiGKTtLa~~~~~~~~~~~-------------------~F~~~~wv~v 213 (984)
+++|-+....++..+..+ .+.+- +-++|+.|+||||+|....+.+.-.. ....+..+..
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~ 81 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNP 81 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecc
Confidence 467888888888888874 44555 99999999999999999555443111 1234555665
Q ss_pred CCCCC---HHHHHHHHHHHhccCccccchHHHHHHHHHHHcCCcEEEEEECCCCccc--hhhh--ccccCCCCcEEEEEc
Q 001999 214 NTDGN---ISDIQEIILERLKVNAKELDNAQRADNISKELKDKRYVLFLDGVSSEIN--FKEI--GIHDDHGRGKVVFAC 286 (984)
Q Consensus 214 s~~~~---~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~--~~~~--~~~~~~~gs~ilvTT 286 (984)
++... ..+..+++.+....... .++.-++++|++..... -..+ .+..-...+.+|++|
T Consensus 82 s~~~~~~i~~~~vr~~~~~~~~~~~---------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~ 146 (325)
T COG0470 82 SDLRKIDIIVEQVRELAEFLSESPL---------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILIT 146 (325)
T ss_pred cccCCCcchHHHHHHHHHHhccCCC---------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEc
Confidence 55544 23444444444332211 36788999999987532 1111 122345566777777
Q ss_pred CC-ccccc---cCCceEEccCCCh
Q 001999 287 RS-REFCW---QADDVIHVERLSP 306 (984)
Q Consensus 287 R~-~~v~~---~~~~~~~l~~L~~ 306 (984)
.. ..+.. ..+..+++.+.+.
T Consensus 147 n~~~~il~tI~SRc~~i~f~~~~~ 170 (325)
T COG0470 147 NDPSKILPTIRSRCQRIRFKPPSR 170 (325)
T ss_pred CChhhccchhhhcceeeecCCchH
Confidence 63 33332 5566777777333
No 244
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.59 E-value=0.074 Score=54.98 Aligned_cols=44 Identities=18% Similarity=0.213 Sum_probs=31.9
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCC
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGN 218 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~ 218 (984)
....++.|.|.+|+||||+|.+...... ..=..++|++....++
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~~~--~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVETA--GQGKKVAYIDTEGLSS 60 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEECCCCCH
Confidence 4578999999999999999999544443 2234577887655554
No 245
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=95.59 E-value=0.65 Score=50.59 Aligned_cols=170 Identities=6% Similarity=0.053 Sum_probs=90.1
Q ss_pred HHHHHHHHHhccCC-ccEEEEEcCCCChHHHHHHHhhhhcccCCCC------CeE--EEEEeCCCCCHHHHHHHHHHHhc
Q 001999 161 EYVETLEKHLSSGG-LKKICICGPLGVGKTTIMENSHDSVGESGRF------DII--FWVNVNTDGNISDIQEIILERLK 231 (984)
Q Consensus 161 ~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F------~~~--~wv~vs~~~~~~~i~~~i~~~l~ 231 (984)
..-..+.+.+..++ ...+-+.|+.|+||+++|+.....+--.... .|. -++..+.-+|+..+.
T Consensus 9 ~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~-------- 80 (325)
T PRK06871 9 PTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILE-------- 80 (325)
T ss_pred HHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEc--------
Confidence 34456666676655 3577799999999999999844433100000 000 000000011111000
Q ss_pred cCccccchHHHHHHHHHHH-----cCCcEEEEEECCCCccc--hhhh--ccccCCCCcEEEEEcCC-ccccc---cCCce
Q 001999 232 VNAKELDNAQRADNISKEL-----KDKRYVLFLDGVSSEIN--FKEI--GIHDDHGRGKVVFACRS-REFCW---QADDV 298 (984)
Q Consensus 232 ~~~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~~~--~~~~--~~~~~~~gs~ilvTTR~-~~v~~---~~~~~ 298 (984)
......-.-+.++.+.+.+ .+++-++|+|++..... ...+ .+..-..++.+|++|.+ ..+.. .....
T Consensus 81 p~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~ 160 (325)
T PRK06871 81 PIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQT 160 (325)
T ss_pred cccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceE
Confidence 0000000012222333333 36677899999987532 2222 12223344566666554 34443 56789
Q ss_pred EEccCCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCCchHH
Q 001999 299 IHVERLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGMPYML 345 (984)
Q Consensus 299 ~~l~~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~GlPlai 345 (984)
+.+.+++.++..+.+.+..... ...+...++.++|.|+.+
T Consensus 161 ~~~~~~~~~~~~~~L~~~~~~~-------~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 161 WLIHPPEEQQALDWLQAQSSAE-------ISEILTALRINYGRPLLA 200 (325)
T ss_pred EeCCCCCHHHHHHHHHHHhccC-------hHHHHHHHHHcCCCHHHH
Confidence 9999999999998888764211 113556788899999644
No 246
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=95.57 E-value=0.52 Score=51.19 Aligned_cols=156 Identities=8% Similarity=0.047 Sum_probs=89.9
Q ss_pred HHHHHHHHHhccCC-ccEEEEEcCCCChHHHHHHHhhhhcc-------------------cCCCCCeEEEEEe---CCCC
Q 001999 161 EYVETLEKHLSSGG-LKKICICGPLGVGKTTIMENSHDSVG-------------------ESGRFDIIFWVNV---NTDG 217 (984)
Q Consensus 161 ~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~~~~~~~-------------------~~~~F~~~~wv~v---s~~~ 217 (984)
....++.+.+..++ ...+-+.|+.|+||+++|+...+.+- ...|-|. .|+.- ++..
T Consensus 10 ~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~-~~i~p~~~~~~I 88 (319)
T PRK06090 10 PVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDL-HVIKPEKEGKSI 88 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCE-EEEecCcCCCcC
Confidence 44556666666554 44788999999999999998433321 0112221 22211 1111
Q ss_pred CHHHHHHHHHHHhccCccccchHHHHHHHHHHH-----cCCcEEEEEECCCCcc--chhhh--ccccCCCCcEEEEEcCC
Q 001999 218 NISDIQEIILERLKVNAKELDNAQRADNISKEL-----KDKRYVLFLDGVSSEI--NFKEI--GIHDDHGRGKVVFACRS 288 (984)
Q Consensus 218 ~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~~--~~~~~--~~~~~~~gs~ilvTTR~ 288 (984)
.++. ++.+.+.+ .+++-++|+|++.... ....+ .+..-..++.+|++|.+
T Consensus 89 ~vdq---------------------iR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~ 147 (319)
T PRK06090 89 TVEQ---------------------IRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHN 147 (319)
T ss_pred CHHH---------------------HHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECC
Confidence 1111 12233332 3456688999998653 22222 12222344555555444
Q ss_pred -ccccc---cCCceEEccCCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCCchHHHHH
Q 001999 289 -REFCW---QADDVIHVERLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGMPYMLKLI 348 (984)
Q Consensus 289 -~~v~~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~~ 348 (984)
..+.. .....+.+.+++.++..+.+... + .+ .+..+++.++|.|+.+..+
T Consensus 148 ~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~-~-----~~----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 148 QKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQ-G-----IT----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred hhhChHHHHhcceeEeCCCCCHHHHHHHHHHc-C-----Cc----hHHHHHHHcCCCHHHHHHH
Confidence 45544 66789999999999999888653 1 11 2356788999999876544
No 247
>PRK06696 uridine kinase; Validated
Probab=95.54 E-value=0.03 Score=58.08 Aligned_cols=43 Identities=23% Similarity=0.380 Sum_probs=34.9
Q ss_pred chHHHHHHHHHHhcc---CCccEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 158 SHKEYVETLEKHLSS---GGLKKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 158 gr~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
.|++.+++|.+.+.. +...+|+|.|.+|+||||+|+...+.+.
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~ 47 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIK 47 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 466777778777753 5688999999999999999999766664
No 248
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.54 E-value=0.0011 Score=67.23 Aligned_cols=101 Identities=16% Similarity=0.243 Sum_probs=69.8
Q ss_pred ccccceeeecccccccccCcHHHHhhcccccEEeecccchhHHHhhcCcccccCCCCcccEeeccCCccccccCCC-Ccc
Q 001999 845 LNSLRTLRVKICHSIKTLFSKEMVAQLNELQDLQVEDCQMIEEIVEAGTVLAIGEFPKLKTLELIDLPKLSTICNS-LLL 923 (984)
Q Consensus 845 l~~L~~L~l~~c~~L~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~L~~L~L~~c~~L~~i~~~-~~~ 923 (984)
+.+.++|+..+| .|.++ +....+|.||.|.++-|.. .-...+..+.+|++|+|.. +.+.++... .+.
T Consensus 18 l~~vkKLNcwg~-~L~DI---sic~kMp~lEVLsLSvNkI-------ssL~pl~rCtrLkElYLRk-N~I~sldEL~YLk 85 (388)
T KOG2123|consen 18 LENVKKLNCWGC-GLDDI---SICEKMPLLEVLSLSVNKI-------SSLAPLQRCTRLKELYLRK-NCIESLDELEYLK 85 (388)
T ss_pred HHHhhhhcccCC-CccHH---HHHHhcccceeEEeecccc-------ccchhHHHHHHHHHHHHHh-cccccHHHHHHHh
Confidence 567788888888 78877 7778888888888886543 1223566788888888876 445555431 245
Q ss_pred CCCCcceEeecccccccccCcC-----CcCCcCcceeec
Q 001999 924 PWPSLETIKIKACNALKSFPST-----FKNTTMLKVIKG 957 (984)
Q Consensus 924 ~l~sL~~L~i~~C~~L~~lp~~-----~~~l~~L~~l~~ 957 (984)
.+|+|+.|.|..+|.-..-+.. +.-|++|++|+-
T Consensus 86 nlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 86 NLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred cCchhhhHhhccCCcccccchhHHHHHHHHcccchhccC
Confidence 7888888888887755554433 345677777663
No 249
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.49 E-value=0.0099 Score=58.34 Aligned_cols=80 Identities=11% Similarity=0.160 Sum_probs=46.2
Q ss_pred cEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHHHHHhccCccccch----HHHHHHHHHHHc
Q 001999 176 KKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEIILERLKVNAKELDN----AQRADNISKELK 251 (984)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~----~~~~~~l~~~L~ 251 (984)
.+|.|.|.+|+||||+|........ . ..+++.-...+| .+..+.|..........+.. .++...+.....
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~~--~---~~~~iat~~~~~-~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~ 75 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQSG--L---QVLYIATAQPFD-DEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAA 75 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHcC--C---CcEeCcCCCCCh-HHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcC
Confidence 3689999999999999999554432 1 233444444333 34555665554433333433 234444544333
Q ss_pred CCcEEEEEECC
Q 001999 252 DKRYVLFLDGV 262 (984)
Q Consensus 252 ~kr~LlVlDdv 262 (984)
+ .-++++|.+
T Consensus 76 ~-~~~VlID~L 85 (170)
T PRK05800 76 P-GRCVLVDCL 85 (170)
T ss_pred C-CCEEEehhH
Confidence 3 337888987
No 250
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.40 E-value=0.28 Score=54.77 Aligned_cols=141 Identities=17% Similarity=0.297 Sum_probs=81.8
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHHHHHhccCccccchHHHHHHHH----H
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEIILERLKVNAKELDNAQRADNIS----K 248 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~----~ 248 (984)
.....+.+.|++|+|||+||...... ..|..+--++-.+ + + ..++......++ .
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~----S~FPFvKiiSpe~------m-------i-----G~sEsaKc~~i~k~F~D 593 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALS----SDFPFVKIISPED------M-------I-----GLSESAKCAHIKKIFED 593 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhh----cCCCeEEEeChHH------c-------c-----CccHHHHHHHHHHHHHH
Confidence 35667789999999999999886654 5565544332111 0 0 111222222233 3
Q ss_pred HHcCCcEEEEEECCCCccchhhhc--------------cc-cCCCCcE--EEEEcCCccccc------cCCceEEccCCC
Q 001999 249 ELKDKRYVLFLDGVSSEINFKEIG--------------IH-DDHGRGK--VVFACRSREFCW------QADDVIHVERLS 305 (984)
Q Consensus 249 ~L~~kr~LlVlDdv~~~~~~~~~~--------------~~-~~~~gs~--ilvTTR~~~v~~------~~~~~~~l~~L~ 305 (984)
..+..--.||+||+....||-.++ +. .-.+|-| |+-||-...+.. .....|.++.++
T Consensus 594 AYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~ 673 (744)
T KOG0741|consen 594 AYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLT 673 (744)
T ss_pred hhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccC
Confidence 345567899999998877766551 11 1233344 444555555544 456688899888
Q ss_pred h-HHHHHHHHHHhCCCCCCCcchHHHHHHHHHHc
Q 001999 306 P-REAKKLFWEVVGVNLKKNPDIEQEADSIVEEC 338 (984)
Q Consensus 306 ~-~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c 338 (984)
. ++..+.++..- ...+.+.+.++++.+.+|
T Consensus 674 ~~~~~~~vl~~~n---~fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 674 TGEQLLEVLEELN---IFSDDEVRAIAEQLLSKK 704 (744)
T ss_pred chHHHHHHHHHcc---CCCcchhHHHHHHHhccc
Confidence 7 67777766542 112334455666666665
No 251
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.39 E-value=0.088 Score=55.59 Aligned_cols=89 Identities=20% Similarity=0.269 Sum_probs=53.3
Q ss_pred CccEEEEEcCCCChHHHHHHHhhh--hcccC--CCCCeEEEEEeCCCCCHHHHHHHHHHHhccCcccc----------ch
Q 001999 174 GLKKICICGPLGVGKTTIMENSHD--SVGES--GRFDIIFWVNVNTDGNISDIQEIILERLKVNAKEL----------DN 239 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~--~~~~~--~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~----------~~ 239 (984)
...+.=|+|.+|+|||.|+.+..- .+... ..=..++|++-...|+..++. +|++..+.+.... +.
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~ 115 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDL 115 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSH
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCH
Confidence 467899999999999999987322 22210 112479999999899988876 4666544322111 00
Q ss_pred HHH---HHHHHHHH-cCCcEEEEEECCC
Q 001999 240 AQR---ADNISKEL-KDKRYVLFLDGVS 263 (984)
Q Consensus 240 ~~~---~~~l~~~L-~~kr~LlVlDdv~ 263 (984)
+++ ...+...+ +.+--|||+|.+-
T Consensus 116 ~~l~~~L~~l~~~l~~~~ikLIVIDSIa 143 (256)
T PF08423_consen 116 EELLELLEQLPKLLSESKIKLIVIDSIA 143 (256)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHHHhhccccceEEEEecchH
Confidence 222 22233333 3455688899874
No 252
>PRK04296 thymidine kinase; Provisional
Probab=95.38 E-value=0.023 Score=57.14 Aligned_cols=110 Identities=12% Similarity=0.035 Sum_probs=60.9
Q ss_pred cEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHHHHHhccCccc--cch-HHHHHHHHHHHcC
Q 001999 176 KKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEIILERLKVNAKE--LDN-AQRADNISKELKD 252 (984)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~--~~~-~~~~~~l~~~L~~ 252 (984)
.++.|+|..|.||||+|.....+.. .+-..++.+. ..++...-...+++.++..... ... ++....+.+ ..+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~--~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~ 77 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYE--ERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGE 77 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHH--HcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCC
Confidence 4788999999999999998555543 2222333331 2223333233455555543322 111 444444444 334
Q ss_pred CcEEEEEECCCCc--cchhhhccccCCCCcEEEEEcCCcc
Q 001999 253 KRYVLFLDGVSSE--INFKEIGIHDDHGRGKVVFACRSRE 290 (984)
Q Consensus 253 kr~LlVlDdv~~~--~~~~~~~~~~~~~gs~ilvTTR~~~ 290 (984)
+.-+||+|.+.-. ++..++.-.-...|..|++|.++..
T Consensus 78 ~~dvviIDEaq~l~~~~v~~l~~~l~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 78 KIDCVLIDEAQFLDKEQVVQLAEVLDDLGIPVICYGLDTD 117 (190)
T ss_pred CCCEEEEEccccCCHHHHHHHHHHHHHcCCeEEEEecCcc
Confidence 5568999999542 2122221112456789999988754
No 253
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.37 E-value=0.46 Score=53.95 Aligned_cols=85 Identities=18% Similarity=0.123 Sum_probs=45.5
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCH--HHHHHHHHHHhccCccccc---h-HHHHHHHH
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNI--SDIQEIILERLKVNAKELD---N-AQRADNIS 247 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~--~~i~~~i~~~l~~~~~~~~---~-~~~~~~l~ 247 (984)
...+|.++|.+|+||||.|.......+. ..+ .+.-|+. +.+.. .+.++.+.+.++.+..... + ........
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~-~g~-kV~lV~~-D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al 170 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKK-KGL-KVGLVAA-DTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGL 170 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHH-cCC-eEEEecC-CCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 4679999999999999999985555541 223 2333332 22322 3445556666554432211 1 22222222
Q ss_pred HHHcCCcEEEEEECC
Q 001999 248 KELKDKRYVLFLDGV 262 (984)
Q Consensus 248 ~~L~~kr~LlVlDdv 262 (984)
+.+++. =+||+|..
T Consensus 171 ~~~~~~-DvVIIDTA 184 (437)
T PRK00771 171 EKFKKA-DVIIVDTA 184 (437)
T ss_pred HHhhcC-CEEEEECC
Confidence 333333 45777776
No 254
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=95.36 E-value=0.57 Score=51.54 Aligned_cols=160 Identities=11% Similarity=0.109 Sum_probs=90.2
Q ss_pred HHHHHHHHHhccCC-ccEEEEEcCCCChHHHHHHHhhhhcc--------------------cCCCCCeEEEEEeCCCCCH
Q 001999 161 EYVETLEKHLSSGG-LKKICICGPLGVGKTTIMENSHDSVG--------------------ESGRFDIIFWVNVNTDGNI 219 (984)
Q Consensus 161 ~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~~~~~~~--------------------~~~~F~~~~wv~vs~~~~~ 219 (984)
..-+++.+.+..++ ...+-+.|+.|+||+|+|......+- ...|-|. .++.-...
T Consensus 9 ~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~-~~i~p~~~--- 84 (334)
T PRK07993 9 PDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDY-YTLTPEKG--- 84 (334)
T ss_pred HHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCE-EEEecccc---
Confidence 44566777776644 45777999999999999998444331 0011121 11110000
Q ss_pred HHHHHHHHHHhccCccccchHHHHHHHHHHH-----cCCcEEEEEECCCCccc--hhhh--ccccCCCCcEEEEEcCC-c
Q 001999 220 SDIQEIILERLKVNAKELDNAQRADNISKEL-----KDKRYVLFLDGVSSEIN--FKEI--GIHDDHGRGKVVFACRS-R 289 (984)
Q Consensus 220 ~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~~~--~~~~--~~~~~~~gs~ilvTTR~-~ 289 (984)
.... .-+.++.+.+.+ .+++-++|+|+++.... -..+ .+..-..++.+|++|.+ .
T Consensus 85 --------------~~~I-~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~ 149 (334)
T PRK07993 85 --------------KSSL-GVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPA 149 (334)
T ss_pred --------------cccC-CHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChh
Confidence 0000 011222233333 36777999999986532 2222 12222345555555554 4
Q ss_pred cccc---cCCceEEccCCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCCchHHH
Q 001999 290 EFCW---QADDVIHVERLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGMPYMLK 346 (984)
Q Consensus 290 ~v~~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~ 346 (984)
.+.. .-...+.+.+++.++..+.+.+..+. + .+.+..+++.++|.|..+.
T Consensus 150 ~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~~~----~---~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 150 RLLATLRSRCRLHYLAPPPEQYALTWLSREVTM----S---QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred hChHHHHhccccccCCCCCHHHHHHHHHHccCC----C---HHHHHHHHHHcCCCHHHHH
Confidence 4543 55668999999999998888654221 1 2346788999999996543
No 255
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.36 E-value=0.0027 Score=61.73 Aligned_cols=84 Identities=18% Similarity=0.260 Sum_probs=40.8
Q ss_pred ceeeecccccccccCcHHHHhhcccccEEeecccchhHHHhhcCcccccCCCCcccEeeccCCccccccCCCCccCCCCc
Q 001999 849 RTLRVKICHSIKTLFSKEMVAQLNELQDLQVEDCQMIEEIVEAGTVLAIGEFPKLKTLELIDLPKLSTICNSLLLPWPSL 928 (984)
Q Consensus 849 ~~L~l~~c~~L~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~L~~L~L~~c~~L~~i~~~~~~~l~sL 928 (984)
+.++-++| .+... ...-+..+++++.|.+.+|..+.... +...-+.+|+|+.|+|++|+++++-.-..+..+++|
T Consensus 104 eaVDAsds-~I~~e-Gle~L~~l~~i~~l~l~~ck~~dD~~---L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknL 178 (221)
T KOG3864|consen 104 EAVDASDS-SIMYE-GLEHLRDLRSIKSLSLANCKYFDDWC---LERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNL 178 (221)
T ss_pred EEEecCCc-hHHHH-HHHHHhccchhhhheeccccchhhHH---HHHhcccccchheeeccCCCeechhHHHHHHHhhhh
Confidence 34444444 33333 33444555555555555555554332 111222455666666666665555443334455556
Q ss_pred ceEeecccc
Q 001999 929 ETIKIKACN 937 (984)
Q Consensus 929 ~~L~i~~C~ 937 (984)
+.|.+.+-+
T Consensus 179 r~L~l~~l~ 187 (221)
T KOG3864|consen 179 RRLHLYDLP 187 (221)
T ss_pred HHHHhcCch
Confidence 666555544
No 256
>PRK13695 putative NTPase; Provisional
Probab=95.35 E-value=0.028 Score=55.74 Aligned_cols=34 Identities=35% Similarity=0.489 Sum_probs=23.6
Q ss_pred EEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEE
Q 001999 177 KICICGPLGVGKTTIMENSHDSVGESGRFDIIFWV 211 (984)
Q Consensus 177 vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv 211 (984)
-|+|+|.+|+|||||++......+. ..+....|+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~-~G~~~~g~~ 35 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKE-EGYKVGGFY 35 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEE
Confidence 4789999999999999995554432 234444344
No 257
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.26 E-value=0.14 Score=56.14 Aligned_cols=58 Identities=17% Similarity=0.151 Sum_probs=40.6
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhcccCCC----CCeEEEEEeCCCCCHHHHHHHHHHHhc
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSVGESGR----FDIIFWVNVNTDGNISDIQEIILERLK 231 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~----F~~~~wv~vs~~~~~~~i~~~i~~~l~ 231 (984)
....++-|+|.+|+|||+++.+..-.+..... =..++||+....|+..++.+. ++.++
T Consensus 100 ~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~-~~~~g 161 (317)
T PRK04301 100 ETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQM-AEALG 161 (317)
T ss_pred cCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHH-HHHcC
Confidence 35789999999999999999994333210011 147999999988888776543 44444
No 258
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.24 E-value=0.033 Score=56.50 Aligned_cols=108 Identities=12% Similarity=0.123 Sum_probs=56.3
Q ss_pred cEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHHHHHhccCccccchHHHHHHHHHHHcCCcE
Q 001999 176 KKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEIILERLKVNAKELDNAQRADNISKELKDKRY 255 (984)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~kr~ 255 (984)
.+|.|+|+.|.||||++......+. ......+++- .++.. .........+...............++..+....=
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~--~~~~~~i~t~-e~~~E--~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd 76 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYIN--KNKTHHILTI-EDPIE--FVHESKRSLINQREVGLDTLSFENALKAALRQDPD 76 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhh--hcCCcEEEEE-cCCcc--ccccCccceeeecccCCCccCHHHHHHHHhcCCcC
Confidence 4789999999999999998444443 3333344432 22111 00000000000000011113344567777777777
Q ss_pred EEEEECCCCccchhhhccccCCCCcEEEEEcCCc
Q 001999 256 VLFLDGVSSEINFKEIGIHDDHGRGKVVFACRSR 289 (984)
Q Consensus 256 LlVlDdv~~~~~~~~~~~~~~~~gs~ilvTTR~~ 289 (984)
.+++|++.+.+..... +.....|-.++.|+-..
T Consensus 77 ~ii~gEird~e~~~~~-l~~a~~G~~v~~t~Ha~ 109 (198)
T cd01131 77 VILVGEMRDLETIRLA-LTAAETGHLVMSTLHTN 109 (198)
T ss_pred EEEEcCCCCHHHHHHH-HHHHHcCCEEEEEecCC
Confidence 9999999877654433 12123455566666443
No 259
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.21 E-value=0.088 Score=53.06 Aligned_cols=57 Identities=25% Similarity=0.253 Sum_probs=36.2
Q ss_pred cEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCC-CCCHHHHHHHHHHHhccCc
Q 001999 176 KKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNT-DGNISDIQEIILERLKVNA 234 (984)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~-~~~~~~i~~~i~~~l~~~~ 234 (984)
+||.+||+.|+||||.+-+...+.+ .+=..+..++... .....+-++..++.++.+.
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~--~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~ 59 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLK--LKGKKVALISADTYRIGAVEQLKTYAEILGVPF 59 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHH--HTT--EEEEEESTSSTHHHHHHHHHHHHHTEEE
T ss_pred EEEEEECCCCCchHhHHHHHHHHHh--hccccceeecCCCCCccHHHHHHHHHHHhcccc
Confidence 6899999999999998887444433 2223455565432 1234556677777777654
No 260
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.21 E-value=0.021 Score=65.32 Aligned_cols=47 Identities=19% Similarity=0.351 Sum_probs=40.7
Q ss_pred CCCCchHHHHHHHHHHhc------cCCccEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 154 SKFPSHKEYVETLEKHLS------SGGLKKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 154 ~~~vgr~~~~~~l~~~L~------~~~~~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
.+++|.++.+++|++.|. +.+-+++.++|+.|+||||||+...+..+
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le 128 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLME 128 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHH
Confidence 358999999999999993 35678999999999999999999777664
No 261
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.20 E-value=0.016 Score=55.42 Aligned_cols=35 Identities=23% Similarity=0.178 Sum_probs=26.7
Q ss_pred ccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEE
Q 001999 175 LKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWV 211 (984)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv 211 (984)
..||.|.|.+|.||||||+...+++. ..-..+.++
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~--~~g~~~~~L 36 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLF--ARGIKVYLL 36 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHH--HTTS-EEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEe
Confidence 35899999999999999999888876 333445555
No 262
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=95.19 E-value=0.27 Score=52.25 Aligned_cols=56 Identities=23% Similarity=0.329 Sum_probs=35.6
Q ss_pred HHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHH
Q 001999 161 EYVETLEKHLSSGGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQ 223 (984)
Q Consensus 161 ~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~ 223 (984)
.-++++..++..+ .-+.+.|++|+|||++|+....... .. .+.++.+...+..+++
T Consensus 9 ~l~~~~l~~l~~g--~~vLL~G~~GtGKT~lA~~la~~lg--~~---~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 9 RVTSRALRYLKSG--YPVHLRGPAGTGKTTLAMHVARKRD--RP---VMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHHhcC--CeEEEEcCCCCCHHHHHHHHHHHhC--CC---EEEEeCCccCCHHHHh
Confidence 3444555555432 4566899999999999999766543 22 3455666555555444
No 263
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=95.17 E-value=0.18 Score=49.39 Aligned_cols=70 Identities=13% Similarity=0.136 Sum_probs=40.1
Q ss_pred CCchHHHHHHHHHHhcc--CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 001999 156 FPSHKEYVETLEKHLSS--GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEIILE 228 (984)
Q Consensus 156 ~vgr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~ 228 (984)
++|....+.++++.+.. ..-.-|.|+|..|+||+.+|+..++.-. ..-..-+-|+++. .+...+..+++.
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~--r~~~pfi~vnc~~-~~~~~~e~~LFG 72 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNSP--RKNGPFISVNCAA-LPEELLESELFG 72 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCST--TTTS-EEEEETTT-S-HHHHHHHHHE
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhh--cccCCeEEEehhh-hhcchhhhhhhc
Confidence 46777788877776654 2234556999999999999999655433 2223334444443 344444444443
No 264
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.17 E-value=0.06 Score=51.29 Aligned_cols=23 Identities=35% Similarity=0.713 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHhhhhc
Q 001999 177 KICICGPLGVGKTTIMENSHDSV 199 (984)
Q Consensus 177 vi~I~G~gGiGKTtLa~~~~~~~ 199 (984)
+|.++|++|+||||+|+......
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 68899999999999999966554
No 265
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.10 E-value=0.051 Score=54.43 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHhhhhcc
Q 001999 177 KICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 177 vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
||.|+|++|+||||+|+...++..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999766643
No 266
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.07 E-value=0.087 Score=54.50 Aligned_cols=118 Identities=14% Similarity=0.089 Sum_probs=68.7
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCC-----CCCHHHHHHHHHHHhccCccc-------cchH
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNT-----DGNISDIQEIILERLKVNAKE-------LDNA 240 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~-----~~~~~~i~~~i~~~l~~~~~~-------~~~~ 240 (984)
.+..++++||.+|+||||+++..-.-.+ --. ..+++.-.+ .....+-..++++.++..... .+..
T Consensus 37 ~~ge~~glVGESG~GKSTlgr~i~~L~~--pt~-G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGG 113 (268)
T COG4608 37 KEGETLGLVGESGCGKSTLGRLILGLEE--PTS-GEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGG 113 (268)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHcCcC--CCC-ceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCch
Confidence 5678999999999999999999665554 222 233332111 112334455666666643321 1113
Q ss_pred HH-HHHHHHHHcCCcEEEEEECCCCccch---hhh--ccc--cCCCCcEEEEEcCCccccc
Q 001999 241 QR-ADNISKELKDKRYVLFLDGVSSEINF---KEI--GIH--DDHGRGKVVFACRSREFCW 293 (984)
Q Consensus 241 ~~-~~~l~~~L~~kr~LlVlDdv~~~~~~---~~~--~~~--~~~~gs~ilvTTR~~~v~~ 293 (984)
++ .-.|.+.|.-+.-++|.|.--+..|. ..+ .+. ....|-..+..|-+-.++.
T Consensus 114 QrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~ 174 (268)
T COG4608 114 QRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVR 174 (268)
T ss_pred hhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhh
Confidence 33 34477889999999999997654332 111 011 3344556666666665554
No 267
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.06 E-value=0.19 Score=50.03 Aligned_cols=116 Identities=17% Similarity=0.246 Sum_probs=64.6
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEE---eCCCCCHHHHHHH------HHHHhccCc------ccc
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVN---VNTDGNISDIQEI------ILERLKVNA------KEL 237 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~---vs~~~~~~~i~~~------i~~~l~~~~------~~~ 237 (984)
..-.+++|+|..|.|||||++....... .....+++. +. ..+....... +++.++... ...
T Consensus 23 ~~G~~~~l~G~nGsGKStLl~~i~G~~~---~~~G~v~~~g~~~~-~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~L 98 (180)
T cd03214 23 EAGEIVGILGPNGAGKSTLLKTLAGLLK---PSSGEILLDGKDLA-SLSPKELARKIAYVPQALELLGLAHLADRPFNEL 98 (180)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECC-cCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccC
Confidence 4567999999999999999999554442 233344432 22 1222222221 344444321 111
Q ss_pred ch-HHHHHHHHHHHcCCcEEEEEECCCCccchh---hh--ccc--cCCCCcEEEEEcCCcccc
Q 001999 238 DN-AQRADNISKELKDKRYVLFLDGVSSEINFK---EI--GIH--DDHGRGKVVFACRSREFC 292 (984)
Q Consensus 238 ~~-~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~---~~--~~~--~~~~gs~ilvTTR~~~v~ 292 (984)
+. +...-.+.+.+-..+-++++|+--...|.. .+ .+. ....|..||++|.+....
T Consensus 99 S~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 99 SGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 12 444445677777888999999976543321 11 111 122267888888765543
No 268
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.04 E-value=0.11 Score=51.35 Aligned_cols=119 Identities=15% Similarity=0.174 Sum_probs=63.0
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhh---hcccCC---CCC--eEEEEEeCCCCCHHHHHHHHHHHhccCcc---c----c
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHD---SVGESG---RFD--IIFWVNVNTDGNISDIQEIILERLKVNAK---E----L 237 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~---~~~~~~---~F~--~~~wv~vs~~~~~~~i~~~i~~~l~~~~~---~----~ 237 (984)
..-.+++|+|+.|+|||||.+.... .+.-.. .|. .+.|+ .+ .+.++.++.... . .
T Consensus 19 ~~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~L 88 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTL 88 (176)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcC
Confidence 4567999999999999999998421 111001 111 12332 22 345566554321 1 1
Q ss_pred ch-HHHHHHHHHHHcCC--cEEEEEECCCCccchh---hh--ccc-cCCCCcEEEEEcCCccccccCCceEEc
Q 001999 238 DN-AQRADNISKELKDK--RYVLFLDGVSSEINFK---EI--GIH-DDHGRGKVVFACRSREFCWQADDVIHV 301 (984)
Q Consensus 238 ~~-~~~~~~l~~~L~~k--r~LlVlDdv~~~~~~~---~~--~~~-~~~~gs~ilvTTR~~~v~~~~~~~~~l 301 (984)
+. +...-.+.+.+-.+ .-++++|+--...|.. .+ .+. ....|..||++|.+......+...+.+
T Consensus 89 SgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~~d~i~~l 161 (176)
T cd03238 89 SGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSSADWIIDF 161 (176)
T ss_pred CHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEE
Confidence 11 33344456666667 7889999976543222 11 111 122467788888776543333333333
No 269
>PRK04132 replication factor C small subunit; Provisional
Probab=95.03 E-value=0.46 Score=58.16 Aligned_cols=149 Identities=12% Similarity=0.098 Sum_probs=90.6
Q ss_pred CCCChHHHHHHHhhhhc-ccCCCC-CeEEEEEeCCCCCHHHHHHHHHHHhccCccccchHHHHHHHHHHHcCCcEEEEEE
Q 001999 183 PLGVGKTTIMENSHDSV-GESGRF-DIIFWVNVNTDGNISDIQEIILERLKVNAKELDNAQRADNISKELKDKRYVLFLD 260 (984)
Q Consensus 183 ~gGiGKTtLa~~~~~~~-~~~~~F-~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVlD 260 (984)
|.++||||+|+...+.+ . ..+ ...+-++.|+...+..+. ++++.+....+. -..+..++|+|
T Consensus 574 Ph~lGKTT~A~ala~~l~g--~~~~~~~lElNASd~rgid~IR-~iIk~~a~~~~~-------------~~~~~KVvIID 637 (846)
T PRK04132 574 PTVLHNTTAALALARELFG--ENWRHNFLELNASDERGINVIR-EKVKEFARTKPI-------------GGASFKIIFLD 637 (846)
T ss_pred CCcccHHHHHHHHHHhhhc--ccccCeEEEEeCCCcccHHHHH-HHHHHHHhcCCc-------------CCCCCEEEEEE
Confidence 78899999999966554 2 223 346778888765555433 333322111000 01256899999
Q ss_pred CCCCcc--chhhh--ccccCCCCcEEEEEcCC-ccccc---cCCceEEccCCChHHHHHHHHHHhCCC-CCCCcchHHHH
Q 001999 261 GVSSEI--NFKEI--GIHDDHGRGKVVFACRS-REFCW---QADDVIHVERLSPREAKKLFWEVVGVN-LKKNPDIEQEA 331 (984)
Q Consensus 261 dv~~~~--~~~~~--~~~~~~~gs~ilvTTR~-~~v~~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~-~~~~~~l~~~~ 331 (984)
++.... ....+ .+..-...+++|++|.+ ..+.. ..+..+++.+++.++-...+.+.+... ... -++..
T Consensus 638 EaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i---~~e~L 714 (846)
T PRK04132 638 EADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLEL---TEEGL 714 (846)
T ss_pred CcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCC---CHHHH
Confidence 998764 23332 11122345566655444 44433 667899999999999988888776533 111 14578
Q ss_pred HHHHHHcCCCchHHHHHHH
Q 001999 332 DSIVEECGGMPYMLKLIGK 350 (984)
Q Consensus 332 ~~I~~~c~GlPlai~~~~~ 350 (984)
..|++.++|.+..+..+-.
T Consensus 715 ~~Ia~~s~GDlR~AIn~Lq 733 (846)
T PRK04132 715 QAILYIAEGDMRRAINILQ 733 (846)
T ss_pred HHHHHHcCCCHHHHHHHHH
Confidence 8999999999855544333
No 270
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.03 E-value=0.19 Score=55.32 Aligned_cols=26 Identities=35% Similarity=0.544 Sum_probs=21.4
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhhc
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDSV 199 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 199 (984)
+.++|+++|++|+||||++.......
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L 265 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQF 265 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHH
Confidence 35799999999999999999944443
No 271
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.03 E-value=0.086 Score=51.58 Aligned_cols=112 Identities=15% Similarity=0.092 Sum_probs=61.9
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCC--CCCHHHHHHHHHHHhccCccccch-HHHHHHHHHH
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNT--DGNISDIQEIILERLKVNAKELDN-AQRADNISKE 249 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~--~~~~~~i~~~i~~~l~~~~~~~~~-~~~~~~l~~~ 249 (984)
..-.+++|+|..|.|||||.+....... .....+++.-.. ..+..+. ..+.++.-.+ .+. +...-.+.+.
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~v~~~g~~~~~~~~~~~---~~~~i~~~~q-LS~G~~qrl~lara 96 (163)
T cd03216 24 RRGEVHALLGENGAGKSTLMKILSGLYK---PDSGEILVDGKEVSFASPRDA---RRAGIAMVYQ-LSVGERQMVEIARA 96 (163)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEECCcCCHHHH---HhcCeEEEEe-cCHHHHHHHHHHHH
Confidence 4567999999999999999999554442 234445543111 1111111 1111221111 222 4445556677
Q ss_pred HcCCcEEEEEECCCCccchh---hh--ccc-cCCCCcEEEEEcCCccc
Q 001999 250 LKDKRYVLFLDGVSSEINFK---EI--GIH-DDHGRGKVVFACRSREF 291 (984)
Q Consensus 250 L~~kr~LlVlDdv~~~~~~~---~~--~~~-~~~~gs~ilvTTR~~~v 291 (984)
+-.++-++++|+--...|.. .+ .+. -...|..||++|.+...
T Consensus 97 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~ 144 (163)
T cd03216 97 LARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDE 144 (163)
T ss_pred HhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 77888899999976543321 11 111 12346778888877653
No 272
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.99 E-value=0.53 Score=56.05 Aligned_cols=170 Identities=14% Similarity=0.156 Sum_probs=100.1
Q ss_pred CCCCchHHHHH---HHHHHhcc---------CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHH
Q 001999 154 SKFPSHKEYVE---TLEKHLSS---------GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISD 221 (984)
Q Consensus 154 ~~~vgr~~~~~---~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~ 221 (984)
.++.|-++.++ +++++|.+ .-.+-+-++|++|.|||-||++.+.... +-|+++|..
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg-------VPF~svSGS----- 378 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG-------VPFFSVSGS----- 378 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC-------CceeeechH-----
Confidence 45678776555 45566665 2367788999999999999999777665 334555542
Q ss_pred HHHHHHHHhccCccccchHHHHHHHHHHHc-CCcEEEEEECCCCcc-----------------chhhhccc-cC---CCC
Q 001999 222 IQEIILERLKVNAKELDNAQRADNISKELK-DKRYVLFLDGVSSEI-----------------NFKEIGIH-DD---HGR 279 (984)
Q Consensus 222 i~~~i~~~l~~~~~~~~~~~~~~~l~~~L~-~kr~LlVlDdv~~~~-----------------~~~~~~~~-~~---~~g 279 (984)
+..+.+.... ..++..|...-+ ..++++.+|++.... .+.++... ++ ..+
T Consensus 379 ---EFvE~~~g~~-----asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~ 450 (774)
T KOG0731|consen 379 ---EFVEMFVGVG-----ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKG 450 (774)
T ss_pred ---HHHHHhcccc-----hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCc
Confidence 1111111110 333444444333 467899999875421 12222111 21 222
Q ss_pred cEEEEEcCCccccc-------cCCceEEccCCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCCchHH
Q 001999 280 GKVVFACRSREFCW-------QADDVIHVERLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGMPYML 345 (984)
Q Consensus 280 s~ilvTTR~~~v~~-------~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~GlPlai 345 (984)
--++-+|...++.. ..+..+.++.=+...-.++|+.++..-. ...+..++++ |+...-|.+=|.
T Consensus 451 vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~-~~~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 451 VIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKK-LDDEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred EEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccC-CCcchhhHHH-HHhcCCCCcHHH
Confidence 33444566655543 4456777777777888889988876552 2244456666 888888887554
No 273
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=94.95 E-value=0.096 Score=54.53 Aligned_cols=28 Identities=29% Similarity=0.372 Sum_probs=24.2
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
....+|+|.|+.|.|||||++......+
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~ 58 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQ 58 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 5678999999999999999999666654
No 274
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=94.93 E-value=0.15 Score=51.80 Aligned_cols=63 Identities=16% Similarity=0.237 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHcCCcEEEEEECCCCc------cchhhhccc-cCCCCcEEEEEcCCccccccCCceEEcc
Q 001999 240 AQRADNISKELKDKRYVLFLDGVSSE------INFKEIGIH-DDHGRGKVVFACRSREFCWQADDVIHVE 302 (984)
Q Consensus 240 ~~~~~~l~~~L~~kr~LlVlDdv~~~------~~~~~~~~~-~~~~gs~ilvTTR~~~v~~~~~~~~~l~ 302 (984)
+...-.|.+.|-..+-+|+-|+=-.. .....+... ....|..||+.|-+..+|..+..++.+.
T Consensus 147 qqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~ 216 (226)
T COG1136 147 QQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELK 216 (226)
T ss_pred HHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEe
Confidence 44555678888899999999974221 122222112 4456889999999999988566665554
No 275
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=94.92 E-value=0.99 Score=49.84 Aligned_cols=41 Identities=20% Similarity=0.366 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhcc---CCccEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 160 KEYVETLEKHLSS---GGLKKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 160 ~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
+.-.+.|.+.+.+ ....+|+|.|.=|+||||+.+...+.++
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~ 45 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELK 45 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4455667777765 4688999999999999999999766665
No 276
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.91 E-value=0.099 Score=51.76 Aligned_cols=24 Identities=33% Similarity=0.314 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHhhhhcc
Q 001999 177 KICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 177 vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
++.++|++|+||||++........
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~ 25 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLK 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 788999999999999999555543
No 277
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=94.88 E-value=0.049 Score=54.01 Aligned_cols=74 Identities=20% Similarity=0.394 Sum_probs=40.7
Q ss_pred CccEEEEEcCCCChHHHHHHHhh-hhcccCCCCCeEEEEEeCCCCCHHHHHHHHHHHhccCccccchHHHHHHHHHHHcC
Q 001999 174 GLKKICICGPLGVGKTTIMENSH-DSVGESGRFDIIFWVNVNTDGNISDIQEIILERLKVNAKELDNAQRADNISKELKD 252 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~-~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~ 252 (984)
+..-+.++|..|+|||.||.... +-++ ..+ .+.|+. ..+++..+-. .......+. +.+.+.
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~--~g~-~v~f~~------~~~L~~~l~~----~~~~~~~~~----~~~~l~- 107 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIR--KGY-SVLFIT------ASDLLDELKQ----SRSDGSYEE----LLKRLK- 107 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHH--TT---EEEEE------HHHHHHHHHC----CHCCTTHCH----HHHHHH-
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhcc--CCc-ceeEee------cCceeccccc----cccccchhh----hcCccc-
Confidence 44679999999999999999943 3443 333 355664 3345544432 211111122 223333
Q ss_pred CcEEEEEECCCCc
Q 001999 253 KRYVLFLDGVSSE 265 (984)
Q Consensus 253 kr~LlVlDdv~~~ 265 (984)
+-=||||||+-..
T Consensus 108 ~~dlLilDDlG~~ 120 (178)
T PF01695_consen 108 RVDLLILDDLGYE 120 (178)
T ss_dssp TSSCEEEETCTSS
T ss_pred cccEeccccccee
Confidence 3457889999653
No 278
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.87 E-value=0.11 Score=55.91 Aligned_cols=26 Identities=35% Similarity=0.469 Sum_probs=21.3
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhhc
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDSV 199 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 199 (984)
+.++|+|+|++|+||||++.......
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~ 218 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARF 218 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999844433
No 279
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.87 E-value=0.018 Score=58.54 Aligned_cols=81 Identities=25% Similarity=0.333 Sum_probs=55.2
Q ss_pred hhccCeEeeeccCCCCCCCCCCCcCceeEEEecCcccC---CCcchHhhcCCCccEEeccCCCCccCC--cchhcccccC
Q 001999 496 EWKDTKKLSLFGFPSSTLPDMPNCCEILTLIVEGRRLE---KLPMSFFEYMCHLQLLDLHDTSIRCLP--PSISRLINLN 570 (984)
Q Consensus 496 ~~~~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~---~l~~~~~~~l~~Lr~L~L~~~~i~~lp--~~i~~l~~L~ 570 (984)
....+.++++.+..++++..++.+++|+.|.++.|... .++.- ...+++|++|++++|+|..+- .....+.+|.
T Consensus 41 ~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl-~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVL-AEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK 119 (260)
T ss_pred cccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceeh-hhhCCceeEEeecCCccccccccchhhhhcchh
Confidence 34567777888888888888899999999999988432 22222 456799999999999887531 1133444444
Q ss_pred eEecCCC
Q 001999 571 ALFLRSC 577 (984)
Q Consensus 571 ~L~L~~c 577 (984)
.|++.+|
T Consensus 120 ~Ldl~n~ 126 (260)
T KOG2739|consen 120 SLDLFNC 126 (260)
T ss_pred hhhcccC
Confidence 4444444
No 280
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=94.86 E-value=0.19 Score=48.30 Aligned_cols=111 Identities=14% Similarity=0.106 Sum_probs=57.2
Q ss_pred cEEEEEcCCCChHHHHHHHh-hhhcccCCCCCeEEEEEeCC---CCCHHHHHHHHHHHh-----ccCc----cccch---
Q 001999 176 KKICICGPLGVGKTTIMENS-HDSVGESGRFDIIFWVNVNT---DGNISDIQEIILERL-----KVNA----KELDN--- 239 (984)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~~-~~~~~~~~~F~~~~wv~vs~---~~~~~~i~~~i~~~l-----~~~~----~~~~~--- 239 (984)
..|-|++..|.||||+|... ...+. ..+ .+.+|..-+ ......+++.+ ..+ +... .....
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~--~g~-~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~ 78 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALG--HGY-RVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIA 78 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH--CCC-eEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHH
Confidence 47888899999999999983 33333 333 233333322 22333333333 011 0000 00101
Q ss_pred --HHHHHHHHHHHcC-CcEEEEEECCCCc-----cchhhh--ccccCCCCcEEEEEcCCcc
Q 001999 240 --AQRADNISKELKD-KRYVLFLDGVSSE-----INFKEI--GIHDDHGRGKVVFACRSRE 290 (984)
Q Consensus 240 --~~~~~~l~~~L~~-kr~LlVlDdv~~~-----~~~~~~--~~~~~~~gs~ilvTTR~~~ 290 (984)
.......++.+.. +-=|||||++-.. .+.+.+ .+.....+.-||+|.|+..
T Consensus 79 ~a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 79 AAAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 2222334444444 4569999998543 222222 2334556779999999854
No 281
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=94.85 E-value=0.18 Score=50.14 Aligned_cols=114 Identities=12% Similarity=0.144 Sum_probs=58.7
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHHHHHhccC---------------cccc
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEIILERLKVN---------------AKEL 237 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~---------------~~~~ 237 (984)
..-.+++|+|..|.|||||++....... .-...+++.-. ++......+.+.++.- ....
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~L 99 (178)
T cd03247 26 KQGEKIALLGRSGSGKSTLLQLLTGDLK---PQQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRF 99 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccCC---CCCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccC
Confidence 4567999999999999999999444332 11122222110 1111111111111100 0111
Q ss_pred ch-HHHHHHHHHHHcCCcEEEEEECCCCccchhh---h--ccccCCCCcEEEEEcCCcccc
Q 001999 238 DN-AQRADNISKELKDKRYVLFLDGVSSEINFKE---I--GIHDDHGRGKVVFACRSREFC 292 (984)
Q Consensus 238 ~~-~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~---~--~~~~~~~gs~ilvTTR~~~v~ 292 (984)
+. +...-.|.+.+-.++-++++|+-....|... + .+.....+..||++|.+....
T Consensus 100 S~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~ 160 (178)
T cd03247 100 SGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGI 160 (178)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHH
Confidence 11 3334446677778888999999876533221 1 111112467788888766543
No 282
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=94.83 E-value=0.14 Score=56.09 Aligned_cols=60 Identities=15% Similarity=0.144 Sum_probs=42.5
Q ss_pred CCccEEEEEcCCCChHHHHHHHhh--hhccc--CCCCCeEEEEEeCCCCCHHHHHHHHHHHhccC
Q 001999 173 GGLKKICICGPLGVGKTTIMENSH--DSVGE--SGRFDIIFWVNVNTDGNISDIQEIILERLKVN 233 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~--~~~~~--~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~ 233 (984)
....++-|+|.+|+|||+|+.+.. -.... ...-..++|++-...|+..++.+ +++.++.+
T Consensus 124 ~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d 187 (344)
T PLN03187 124 ETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMD 187 (344)
T ss_pred CCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCC
Confidence 356788899999999999998832 22210 01224789999999999888765 55666543
No 283
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=94.79 E-value=0.15 Score=53.82 Aligned_cols=90 Identities=16% Similarity=0.169 Sum_probs=57.4
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHHHHHhc---cCccccch--HHHHHHHH
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEIILERLK---VNAKELDN--AQRADNIS 247 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~---~~~~~~~~--~~~~~~l~ 247 (984)
+..+++=|+|+.|.||||+|.+..-.+. ..-..++|++.-..+++.++.+--...+. ...+...+ .+.+..+.
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~~aq--~~g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~v~~~~~~e~q~~i~~~~~ 135 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVANAQ--KPGGKAAFIDTEHALDPERAKQLGVDLLDNLLVSQPDTGEQQLEIAEKLA 135 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHHHhh--cCCCeEEEEeCCCCCCHHHHHHHHHhhhcceeEecCCCHHHHHHHHHHHH
Confidence 4578999999999999999999444443 33348999999999998876543333121 11111111 33344444
Q ss_pred HHHcCCcEEEEEECCCC
Q 001999 248 KELKDKRYVLFLDGVSS 264 (984)
Q Consensus 248 ~~L~~kr~LlVlDdv~~ 264 (984)
+....+--|+|+|-+-.
T Consensus 136 ~~~~~~i~LvVVDSvaa 152 (279)
T COG0468 136 RSGAEKIDLLVVDSVAA 152 (279)
T ss_pred HhccCCCCEEEEecCcc
Confidence 44444567899998753
No 284
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=94.79 E-value=0.073 Score=57.53 Aligned_cols=84 Identities=15% Similarity=0.145 Sum_probs=52.8
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHHHHHhccCccc------cchHHHHHHH
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEIILERLKVNAKE------LDNAQRADNI 246 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~------~~~~~~~~~l 246 (984)
+.-+++-|+|++|+||||||.+...... ..-..++|+.....++.. .+++++.+.+. ...++....+
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~~~--~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~ 125 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAEAQ--KAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA 125 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 4668999999999999999998433333 233567788877766653 34444433211 1114444444
Q ss_pred HHHHc-CCcEEEEEECCC
Q 001999 247 SKELK-DKRYVLFLDGVS 263 (984)
Q Consensus 247 ~~~L~-~kr~LlVlDdv~ 263 (984)
...++ +..-+||+|.|-
T Consensus 126 ~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHHhhccCCcEEEEcchh
Confidence 44443 467799999975
No 285
>PRK10867 signal recognition particle protein; Provisional
Probab=94.79 E-value=0.18 Score=57.06 Aligned_cols=25 Identities=28% Similarity=0.251 Sum_probs=20.3
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhh
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDS 198 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~ 198 (984)
...+|.++|.+|+||||.|......
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~ 123 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKY 123 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHH
Confidence 4689999999999999988774333
No 286
>PTZ00301 uridine kinase; Provisional
Probab=94.78 E-value=0.032 Score=56.78 Aligned_cols=27 Identities=26% Similarity=0.309 Sum_probs=22.6
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
+..+|+|.|.+|+||||||+...+++.
T Consensus 2 ~~~iIgIaG~SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 2 PCTVIGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred CCEEEEEECCCcCCHHHHHHHHHHHHH
Confidence 357999999999999999998665553
No 287
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=94.74 E-value=0.14 Score=52.08 Aligned_cols=95 Identities=19% Similarity=0.315 Sum_probs=56.1
Q ss_pred HHHHhcc-CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCC-CHHHHHHHHHHHhccC-------ccc
Q 001999 166 LEKHLSS-GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDG-NISDIQEIILERLKVN-------AKE 236 (984)
Q Consensus 166 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~-------~~~ 236 (984)
.++.+.. .+-.-++|+|..|+|||+|++....... =+..+++.+.+.. ++.++.+++...-..+ ...
T Consensus 5 ~ID~l~Pig~Gqr~~I~g~~g~GKt~Ll~~i~~~~~----~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~ 80 (215)
T PF00006_consen 5 AIDLLFPIGRGQRIGIFGGAGVGKTVLLQEIANNQD----ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSD 80 (215)
T ss_dssp HHHHHSCEETTSEEEEEESTTSSHHHHHHHHHHHCT----TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETT
T ss_pred eeccccccccCCEEEEEcCcccccchhhHHHHhccc----ccceeeeeccccchhHHHHHHHHhhcccccccccccccch
Confidence 3445544 3456889999999999999999544432 2345888887653 4556666664431110 111
Q ss_pred cch------HHHHHHHHHHH--cCCcEEEEEECCCC
Q 001999 237 LDN------AQRADNISKEL--KDKRYVLFLDGVSS 264 (984)
Q Consensus 237 ~~~------~~~~~~l~~~L--~~kr~LlVlDdv~~ 264 (984)
.+. ....-.+.+++ +|+.+|+++||+-.
T Consensus 81 ~~~~~r~~~~~~a~t~AEyfrd~G~dVlli~Dsltr 116 (215)
T PF00006_consen 81 EPPAARYRAPYTALTIAEYFRDQGKDVLLIIDSLTR 116 (215)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHTTSEEEEEEETHHH
T ss_pred hhHHHHhhhhccchhhhHHHhhcCCceeehhhhhHH
Confidence 110 11112233333 68999999999843
No 288
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=94.72 E-value=0.07 Score=53.59 Aligned_cols=27 Identities=33% Similarity=0.492 Sum_probs=24.2
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
++.+|+|.|.+|+||||+|+.....++
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~ 33 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLG 33 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 457999999999999999999887776
No 289
>PRK08233 hypothetical protein; Provisional
Probab=94.70 E-value=0.096 Score=52.32 Aligned_cols=26 Identities=35% Similarity=0.353 Sum_probs=22.2
Q ss_pred ccEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 175 LKKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
..+|+|.|.+|+||||+|+...+...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 47899999999999999999666553
No 290
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.70 E-value=0.32 Score=48.11 Aligned_cols=109 Identities=17% Similarity=0.103 Sum_probs=59.6
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEE------eCCCCCHHHHHHHHHHHhccCccccch-HHHHHH
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVN------VNTDGNISDIQEIILERLKVNAKELDN-AQRADN 245 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~------vs~~~~~~~i~~~i~~~l~~~~~~~~~-~~~~~~ 245 (984)
..-.+++|+|..|.|||||++......+ .....+++. +.+... .+. +...-.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~q~~~------------------LSgGq~qrv~ 81 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQLI---PNGDNDEWDGITPVYKPQYID------------------LSGGELQRVA 81 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCC---CCCcEEEECCEEEEEEcccCC------------------CCHHHHHHHH
Confidence 4567999999999999999999544432 122222221 112111 222 444455
Q ss_pred HHHHHcCCcEEEEEECCCCccchh---hh--ccc--cCCCCcEEEEEcCCccccc-cCCceEEcc
Q 001999 246 ISKELKDKRYVLFLDGVSSEINFK---EI--GIH--DDHGRGKVVFACRSREFCW-QADDVIHVE 302 (984)
Q Consensus 246 l~~~L~~kr~LlVlDdv~~~~~~~---~~--~~~--~~~~gs~ilvTTR~~~v~~-~~~~~~~l~ 302 (984)
+.+.+-.+.-++++|+--...|.. .+ .+. ....+..||++|-+..... -+...+.+.
T Consensus 82 laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~ 146 (177)
T cd03222 82 IAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFE 146 (177)
T ss_pred HHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEc
Confidence 667777888899999975543221 11 111 1122356777776654433 233444443
No 291
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=94.70 E-value=0.12 Score=52.13 Aligned_cols=24 Identities=38% Similarity=0.541 Sum_probs=21.2
Q ss_pred EEEEEcCCCChHHHHHHHhhhhcc
Q 001999 177 KICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 177 vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
||+|.|.+|+||||+|+.....+.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 799999999999999999666664
No 292
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=94.68 E-value=1.4 Score=48.37 Aligned_cols=87 Identities=16% Similarity=0.179 Sum_probs=54.3
Q ss_pred CCcEEEEEECCCCcc--chhhh--ccccCCCCcEEE-EEcCCccccc---cCCceEEccCCChHHHHHHHHHHhCCCCCC
Q 001999 252 DKRYVLFLDGVSSEI--NFKEI--GIHDDHGRGKVV-FACRSREFCW---QADDVIHVERLSPREAKKLFWEVVGVNLKK 323 (984)
Q Consensus 252 ~kr~LlVlDdv~~~~--~~~~~--~~~~~~~gs~il-vTTR~~~v~~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~ 323 (984)
+++-++|+|++.... ....+ .+..-..++.+| +|++-..+.. .-...+.+.+++.++..+.+.+. +.
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~-~~---- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ-GV---- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc-CC----
Confidence 556688999998653 23332 122223445455 4555455554 55689999999999999888765 11
Q ss_pred CcchHHHHHHHHHHcCCCchHHHHH
Q 001999 324 NPDIEQEADSIVEECGGMPYMLKLI 348 (984)
Q Consensus 324 ~~~l~~~~~~I~~~c~GlPlai~~~ 348 (984)
++ ...++..++|.|..+..+
T Consensus 206 -~~----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 206 -AD----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred -Ch----HHHHHHHcCCCHHHHHHH
Confidence 11 223577889999755444
No 293
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.66 E-value=0.21 Score=56.55 Aligned_cols=25 Identities=28% Similarity=0.182 Sum_probs=20.9
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhh
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDS 198 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~ 198 (984)
...++.++|.+|+||||.|......
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~ 122 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYY 122 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHH
Confidence 4679999999999999999884444
No 294
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=94.66 E-value=0.35 Score=47.43 Aligned_cols=113 Identities=17% Similarity=0.226 Sum_probs=60.1
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhccc-CCC--CC---eEEEEEeCCCC--CHHHHHHHHHHHhccCccccch-HHHH
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSVGE-SGR--FD---IIFWVNVNTDG--NISDIQEIILERLKVNAKELDN-AQRA 243 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~-~~~--F~---~~~wv~vs~~~--~~~~i~~~i~~~l~~~~~~~~~-~~~~ 243 (984)
..-.+++|+|..|.|||||++......+. ... ++ .+.+ +.+.. ....+.+.+.-. .....+. +...
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~--~~q~~~~~~~tv~~nl~~~---~~~~LS~G~~~r 99 (166)
T cd03223 25 KPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLF--LPQRPYLPLGTLREQLIYP---WDDVLSGGEQQR 99 (166)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEE--ECCCCccccccHHHHhhcc---CCCCCCHHHHHH
Confidence 45679999999999999999994443320 011 11 1222 23322 112333333211 1112222 4445
Q ss_pred HHHHHHHcCCcEEEEEECCCCccchhh---h--ccccCCCCcEEEEEcCCcccc
Q 001999 244 DNISKELKDKRYVLFLDGVSSEINFKE---I--GIHDDHGRGKVVFACRSREFC 292 (984)
Q Consensus 244 ~~l~~~L~~kr~LlVlDdv~~~~~~~~---~--~~~~~~~gs~ilvTTR~~~v~ 292 (984)
-.+.+.+-.++=++++|+--...|... + .+... +..||++|.+....
T Consensus 100 v~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~ 151 (166)
T cd03223 100 LAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLW 151 (166)
T ss_pred HHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHH
Confidence 556777778888899999765433221 1 11111 46677777765543
No 295
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.62 E-value=0.09 Score=48.98 Aligned_cols=101 Identities=14% Similarity=0.268 Sum_probs=51.6
Q ss_pred CCCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCCc-chhcccccCeEecCCCcccccCch-hhhccCCC
Q 001999 516 MPNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLPP-SISRLINLNALFLRSCSLLFQLPK-EIRYLQKL 593 (984)
Q Consensus 516 ~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~-~i~~L~~L 593 (984)
+..+.+|+.+.+.. .+..++...|.++..|+.+.+.++ +..++. .+..+.+|+++.+.+ .+..++. .+..+.+|
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-TTE
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc--cccccccccccccccc
Confidence 45666777777764 566777777788877888888764 666543 456676778877754 2333333 35557777
Q ss_pred cEEEecCccccccchh-hhccCCCCeeecc
Q 001999 594 EILDVRHTRIQCLPSE-IGQLIKLKCLRVS 622 (984)
Q Consensus 594 ~~L~l~~~~l~~lp~~-~~~L~~L~~L~l~ 622 (984)
+.+++..+ +..++.. +.+. +|+.+.+.
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence 77777654 5544433 4454 66666654
No 296
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=94.62 E-value=0.39 Score=48.83 Aligned_cols=164 Identities=17% Similarity=0.201 Sum_probs=92.9
Q ss_pred CCCCchHHHHHH---HHHHhccC------CccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHH
Q 001999 154 SKFPSHKEYVET---LEKHLSSG------GLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQE 224 (984)
Q Consensus 154 ~~~vgr~~~~~~---l~~~L~~~------~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~ 224 (984)
++++|.++.+.+ |+++|.++ ..+-|..+|++|.|||-+|+......+ ..| +.|- ..+
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~k--vp~-----l~vk-------at~ 186 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAK--VPL-----LLVK-------ATE 186 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccC--Cce-----EEec-------hHH
Confidence 567998877654 67888763 367888999999999999999776665 222 2211 112
Q ss_pred HHHHHhccCccccchHHHHHHHHHHH-cCCcEEEEEECCCCc----------cchhhh---ccc-----cCCCCcEEEEE
Q 001999 225 IILERLKVNAKELDNAQRADNISKEL-KDKRYVLFLDGVSSE----------INFKEI---GIH-----DDHGRGKVVFA 285 (984)
Q Consensus 225 ~i~~~l~~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~----------~~~~~~---~~~-----~~~~gs~ilvT 285 (984)
-|-+.+|. ....+.++.+.- +.-.+++.+|.+... .|..++ .+. ..+.|-..|-.
T Consensus 187 liGehVGd------gar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaa 260 (368)
T COG1223 187 LIGEHVGD------GARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAA 260 (368)
T ss_pred HHHHHhhh------HHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEee
Confidence 22222221 122333333332 346899999988542 122111 011 23445555555
Q ss_pred cCCccccc-----cCCceEEccCCChHHHHHHHHHHhCCC-CCCCcchHHHHHHHHHHcCCC
Q 001999 286 CRSREFCW-----QADDVIHVERLSPREAKKLFWEVVGVN-LKKNPDIEQEADSIVEECGGM 341 (984)
Q Consensus 286 TR~~~v~~-----~~~~~~~l~~L~~~~~~~Lf~~~~~~~-~~~~~~l~~~~~~I~~~c~Gl 341 (984)
|-...... ....-++..-=+++|-.+++..++..- ...... .+.++++.+|+
T Consensus 261 TN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~----~~~~~~~t~g~ 318 (368)
T COG1223 261 TNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDAD----LRYLAAKTKGM 318 (368)
T ss_pred cCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccC----HHHHHHHhCCC
Confidence 65555443 344566766677888888888776532 111122 34555666654
No 297
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=94.59 E-value=0.4 Score=57.94 Aligned_cols=147 Identities=15% Similarity=0.166 Sum_probs=78.9
Q ss_pred CCCchHHHHHHH---HHHhcc---------CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHH
Q 001999 155 KFPSHKEYVETL---EKHLSS---------GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDI 222 (984)
Q Consensus 155 ~~vgr~~~~~~l---~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i 222 (984)
++.|.+...+++ ++++.+ .-.+-|.++|++|+||||+|+....... ..| +.++.++ +
T Consensus 153 di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~--~~f---~~is~~~------~ 221 (644)
T PRK10733 153 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK--VPF---FTISGSD------F 221 (644)
T ss_pred HHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC--CCE---EEEehHH------h
Confidence 356766555544 444332 1134589999999999999999776665 333 2222221 1
Q ss_pred HHHHHHHhccCccccchHHHHHHHHHHHcCCcEEEEEECCCCcc------------chh----hhc--cc--cCCCCcEE
Q 001999 223 QEIILERLKVNAKELDNAQRADNISKELKDKRYVLFLDGVSSEI------------NFK----EIG--IH--DDHGRGKV 282 (984)
Q Consensus 223 ~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~------------~~~----~~~--~~--~~~~gs~i 282 (984)
.. +. .+ .........+...-...+++|++|+++... ... .+. +. ....+.-|
T Consensus 222 ~~-~~--~g-----~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~viv 293 (644)
T PRK10733 222 VE-MF--VG-----VGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIV 293 (644)
T ss_pred HH-hh--hc-----ccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeE
Confidence 11 00 00 001122222333334578999999986531 111 110 00 12334455
Q ss_pred EEEcCCccccc-------cCCceEEccCCChHHHHHHHHHHhCCC
Q 001999 283 VFACRSREFCW-------QADDVIHVERLSPREAKKLFWEVVGVN 320 (984)
Q Consensus 283 lvTTR~~~v~~-------~~~~~~~l~~L~~~~~~~Lf~~~~~~~ 320 (984)
|.||....... .....+.+..-+.++-.++++.+....
T Consensus 294 IaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~ 338 (644)
T PRK10733 294 IAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRV 338 (644)
T ss_pred EEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcC
Confidence 55776655433 234677788888888888888776543
No 298
>PRK07667 uridine kinase; Provisional
Probab=94.56 E-value=0.064 Score=54.14 Aligned_cols=38 Identities=21% Similarity=0.189 Sum_probs=29.0
Q ss_pred HHHHHHHhcc--CCccEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 163 VETLEKHLSS--GGLKKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 163 ~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
.+.|.+.+.. +...+|+|-|.+|+||||+|+...+.++
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~ 42 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMK 42 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3455555544 4557999999999999999999666654
No 299
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.56 E-value=0.028 Score=54.77 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=21.2
Q ss_pred cEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 176 KKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
+.|-+.|.+|+||||+|++..+..+
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~ 26 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELR 26 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHH
Confidence 4678899999999999999766665
No 300
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.55 E-value=0.11 Score=51.67 Aligned_cols=27 Identities=26% Similarity=0.290 Sum_probs=22.7
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
...+|.|+|++|+||||+|+.......
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~ 29 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLR 29 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 456999999999999999999665553
No 301
>PRK09354 recA recombinase A; Provisional
Probab=94.54 E-value=0.099 Score=57.05 Aligned_cols=84 Identities=14% Similarity=0.141 Sum_probs=54.0
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHHHHHhccCccc------cchHHHHHHH
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEIILERLKVNAKE------LDNAQRADNI 246 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~------~~~~~~~~~l 246 (984)
+.-+++-|+|+.|+||||||.+...... ..-...+||..-..++.. .+++++.+.+. ...++....+
T Consensus 58 p~G~IteI~G~~GsGKTtLal~~~~~~~--~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~ 130 (349)
T PRK09354 58 PRGRIVEIYGPESSGKTTLALHAIAEAQ--KAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIA 130 (349)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 4578999999999999999999433333 333568899888877753 34444433211 1114444444
Q ss_pred HHHHc-CCcEEEEEECCC
Q 001999 247 SKELK-DKRYVLFLDGVS 263 (984)
Q Consensus 247 ~~~L~-~kr~LlVlDdv~ 263 (984)
...++ +..-+||+|-|-
T Consensus 131 ~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 131 DTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHHhhcCCCCEEEEeChh
Confidence 44443 456799999985
No 302
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.54 E-value=0.11 Score=49.81 Aligned_cols=23 Identities=30% Similarity=0.458 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHhhhhc
Q 001999 177 KICICGPLGVGKTTIMENSHDSV 199 (984)
Q Consensus 177 vi~I~G~gGiGKTtLa~~~~~~~ 199 (984)
||.|+|.+|+||||+|+......
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999955554
No 303
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=94.54 E-value=0.22 Score=48.42 Aligned_cols=54 Identities=15% Similarity=0.195 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHcCCcEEEEEECC----CCccchhhh-ccc-cCCCCcEEEEEcCCccccc
Q 001999 240 AQRADNISKELKDKRYVLFLDGV----SSEINFKEI-GIH-DDHGRGKVVFACRSREFCW 293 (984)
Q Consensus 240 ~~~~~~l~~~L~~kr~LlVlDdv----~~~~~~~~~-~~~-~~~~gs~ilvTTR~~~v~~ 293 (984)
++..-.|.+.+-+++-+|+=|.= +....|+-+ .+. -+..|..||++|-+..+-.
T Consensus 142 EQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~ 201 (223)
T COG2884 142 EQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVN 201 (223)
T ss_pred HHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHH
Confidence 45555678888899999999963 334445544 122 5778999999999887655
No 304
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=94.51 E-value=0.084 Score=57.11 Aligned_cols=84 Identities=15% Similarity=0.158 Sum_probs=52.9
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHHHHHhccCccc-----c-chHHHHHHH
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEIILERLKVNAKE-----L-DNAQRADNI 246 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~-----~-~~~~~~~~l 246 (984)
+.-+++-|+|++|+||||||.+...... ..-..++|++....++.. .+++++.+.+. . ..++....+
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~~~~--~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIAEAQ--KLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHH
Confidence 4578999999999999999999443333 333568899887777653 33444332111 1 114444444
Q ss_pred HHHHc-CCcEEEEEECCC
Q 001999 247 SKELK-DKRYVLFLDGVS 263 (984)
Q Consensus 247 ~~~L~-~kr~LlVlDdv~ 263 (984)
...++ +.--+||+|-|-
T Consensus 126 ~~li~s~~~~lIVIDSva 143 (325)
T cd00983 126 DSLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHHhccCCCEEEEcchH
Confidence 44443 456789999974
No 305
>PRK06547 hypothetical protein; Provisional
Probab=94.51 E-value=0.048 Score=53.64 Aligned_cols=34 Identities=29% Similarity=0.447 Sum_probs=26.9
Q ss_pred HHHHhccCCccEEEEEcCCCChHHHHHHHhhhhc
Q 001999 166 LEKHLSSGGLKKICICGPLGVGKTTIMENSHDSV 199 (984)
Q Consensus 166 l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~ 199 (984)
+...+......+|+|.|++|+||||+|+...+..
T Consensus 6 ~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 6 IAARLCGGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred HHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444556778899999999999999999965543
No 306
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=94.50 E-value=0.13 Score=53.19 Aligned_cols=129 Identities=17% Similarity=0.192 Sum_probs=71.3
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhcc----cCC-------CC---CeEEEEEeC----CCC--CH-------------
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSVG----ESG-------RF---DIIFWVNVN----TDG--NI------------- 219 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~----~~~-------~F---~~~~wv~vs----~~~--~~------------- 219 (984)
..-.+++|+|+.|.|||||.+..-..++ +.. .+ ..+.||.-. ..| .+
T Consensus 28 ~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g 107 (254)
T COG1121 28 EKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKG 107 (254)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCccccc
Confidence 3458999999999999999998332211 001 11 245555321 111 11
Q ss_pred ---------HHHHHHHHHHhccCc------cccch-HHHHHHHHHHHcCCcEEEEEECCCCccc------hhhhccccCC
Q 001999 220 ---------SDIQEIILERLKVNA------KELDN-AQRADNISKELKDKRYVLFLDGVSSEIN------FKEIGIHDDH 277 (984)
Q Consensus 220 ---------~~i~~~i~~~l~~~~------~~~~~-~~~~~~l~~~L~~kr~LlVlDdv~~~~~------~~~~~~~~~~ 277 (984)
++...+.++.++... ...+. +...-.|.+.|..+.=|++||.=-...| .-++.-.-..
T Consensus 108 ~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~ 187 (254)
T COG1121 108 WFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQ 187 (254)
T ss_pred ccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHH
Confidence 244555555555432 12222 3344557888999999999998544322 1122111122
Q ss_pred CCcEEEEEcCCccccc-cCCceEEc
Q 001999 278 GRGKVVFACRSREFCW-QADDVIHV 301 (984)
Q Consensus 278 ~gs~ilvTTR~~~v~~-~~~~~~~l 301 (984)
.|..||++|-+-.... .++.++-+
T Consensus 188 eg~tIl~vtHDL~~v~~~~D~vi~L 212 (254)
T COG1121 188 EGKTVLMVTHDLGLVMAYFDRVICL 212 (254)
T ss_pred CCCEEEEEeCCcHHhHhhCCEEEEE
Confidence 3899999998765544 34444333
No 307
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.50 E-value=0.038 Score=51.89 Aligned_cols=25 Identities=40% Similarity=0.535 Sum_probs=21.6
Q ss_pred cEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 176 KKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
--|+|.|++|+||||+++...+.++
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~ 30 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLR 30 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHH
Confidence 4589999999999999999776665
No 308
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.49 E-value=0.51 Score=48.92 Aligned_cols=176 Identities=16% Similarity=0.206 Sum_probs=96.0
Q ss_pred CCCCchHHHHHHHHHHhcc------------CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHH
Q 001999 154 SKFPSHKEYVETLEKHLSS------------GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISD 221 (984)
Q Consensus 154 ~~~vgr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~ 221 (984)
+++-|.+...+.|.+.+.= ...+-|.++|++|.||+-||+++..... . -|.+||.. +
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn--S-----TFFSvSSS----D 201 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN--S-----TFFSVSSS----D 201 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC--C-----ceEEeehH----H
Confidence 5678888888888876532 2368899999999999999999877654 2 34555542 1
Q ss_pred HHHHHHHHhccCccccchHHHHHHHHHHHc-CCcEEEEEECCCCc------cc---hhh----h-----ccccCCCCcEE
Q 001999 222 IQEIILERLKVNAKELDNAQRADNISKELK-DKRYVLFLDGVSSE------IN---FKE----I-----GIHDDHGRGKV 282 (984)
Q Consensus 222 i~~~i~~~l~~~~~~~~~~~~~~~l~~~L~-~kr~LlVlDdv~~~------~~---~~~----~-----~~~~~~~gs~i 282 (984)
+. -+.++ ..+.+...|.+.-+ .|.-+|.+|.|... .+ -.. + +.-.+..|.-|
T Consensus 202 Lv---SKWmG------ESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLV 272 (439)
T KOG0739|consen 202 LV---SKWMG------ESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLV 272 (439)
T ss_pred HH---HHHhc------cHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEE
Confidence 11 11111 11455555555543 68899999998642 11 111 1 22234455555
Q ss_pred EEEcCCccccc-----cCCceEEccCCChHHHH-HHHHHHhCCCCCCCcchHHHHHHHHHHcCC---CchHHHHHHHHh
Q 001999 283 VFACRSREFCW-----QADDVIHVERLSPREAK-KLFWEVVGVNLKKNPDIEQEADSIVEECGG---MPYMLKLIGKEL 352 (984)
Q Consensus 283 lvTTR~~~v~~-----~~~~~~~l~~L~~~~~~-~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~G---lPlai~~~~~~l 352 (984)
+-.|...-+.. .....|. -||.+..|. .+|+-+.+... +.--+.-.++++++..| .-.+|++--.+|
T Consensus 273 LgATNiPw~LDsAIRRRFekRIY-IPLPe~~AR~~MF~lhlG~tp--~~LT~~d~~eL~~kTeGySGsDisivVrDalm 348 (439)
T KOG0739|consen 273 LGATNIPWVLDSAIRRRFEKRIY-IPLPEAHARARMFKLHLGDTP--HVLTEQDFKELARKTEGYSGSDISIVVRDALM 348 (439)
T ss_pred EecCCCchhHHHHHHHHhhccee-ccCCcHHHhhhhheeccCCCc--cccchhhHHHHHhhcCCCCcCceEEEehhhhh
Confidence 55666554433 2223333 356666664 44555555431 11112234455556554 444444433333
No 309
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=94.49 E-value=0.099 Score=56.64 Aligned_cols=28 Identities=25% Similarity=0.186 Sum_probs=25.0
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
.....++|+|++|+|||.+|+.......
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg 173 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMG 173 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcC
Confidence 4568999999999999999999888876
No 310
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=94.47 E-value=0.26 Score=58.98 Aligned_cols=153 Identities=14% Similarity=0.137 Sum_probs=86.8
Q ss_pred CCCCCchHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHhhhhcccC---CCC-CeEEEEEeCCCCCHHHHHHHHHH
Q 001999 153 ASKFPSHKEYVETLEKHLSSGGLKKICICGPLGVGKTTIMENSHDSVGES---GRF-DIIFWVNVNTDGNISDIQEIILE 228 (984)
Q Consensus 153 ~~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~---~~F-~~~~wv~vs~~~~~~~i~~~i~~ 228 (984)
...++||++++.++++.|....-.=-.++|.+|+|||++|.-...++-.. ... +..++. .|+-.
T Consensus 169 lDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~s-----LD~g~------- 236 (786)
T COG0542 169 LDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYS-----LDLGS------- 236 (786)
T ss_pred CCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEE-----ecHHH-------
Confidence 45689999999999999986221122368999999999998866655311 111 111111 11111
Q ss_pred HhccCccccchHHHHHHHHHHHc-CCcEEEEEECCCCc----------cchhhhccccCCCCc-EEEE-EcCCccc----
Q 001999 229 RLKVNAKELDNAQRADNISKELK-DKRYVLFLDGVSSE----------INFKEIGIHDDHGRG-KVVF-ACRSREF---- 291 (984)
Q Consensus 229 ~l~~~~~~~~~~~~~~~l~~~L~-~kr~LlVlDdv~~~----------~~~~~~~~~~~~~gs-~ilv-TTR~~~v---- 291 (984)
-+.+.....+-+++...+.+.++ .++.+|++|.+... .|-..+.-|.-.+|. ++|- ||=++.-
T Consensus 237 LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~~IGATT~~EYRk~iE 316 (786)
T COG0542 237 LVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGATTLDEYRKYIE 316 (786)
T ss_pred HhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeEEEEeccHHHHHHHhh
Confidence 11111112222444444444444 45899999998542 123333445334443 4444 4433321
Q ss_pred ---cc-cCCceEEccCCChHHHHHHHHHHh
Q 001999 292 ---CW-QADDVIHVERLSPREAKKLFWEVV 317 (984)
Q Consensus 292 ---~~-~~~~~~~l~~L~~~~~~~Lf~~~~ 317 (984)
|- ...+.+.+..-+.+++...++-..
T Consensus 317 KD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 317 KDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred hchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 11 567788888889999988886554
No 311
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=94.47 E-value=0.48 Score=51.90 Aligned_cols=83 Identities=12% Similarity=0.105 Sum_probs=46.9
Q ss_pred CCcEEEEEECCCCccc--hhhh--ccccCCCCcEEEEEcCCcc-ccc---cCCceEEccCCChHHHHHHHHHHhCCCCCC
Q 001999 252 DKRYVLFLDGVSSEIN--FKEI--GIHDDHGRGKVVFACRSRE-FCW---QADDVIHVERLSPREAKKLFWEVVGVNLKK 323 (984)
Q Consensus 252 ~kr~LlVlDdv~~~~~--~~~~--~~~~~~~gs~ilvTTR~~~-v~~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~ 323 (984)
+++-++|+|++...+. -..+ .+..-..+..+|++|.+.. +.. .....+.+.+++.++..+.+.+. +.
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~-~~---- 186 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER-GV---- 186 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc-CC----
Confidence 4455566688776431 1111 1111123465666666644 443 56788999999999998888654 11
Q ss_pred CcchHHHHHHHHHHcCCCchH
Q 001999 324 NPDIEQEADSIVEECGGMPYM 344 (984)
Q Consensus 324 ~~~l~~~~~~I~~~c~GlPla 344 (984)
+. . ... +..++|.|+.
T Consensus 187 -~~-~--~~~-l~~~~g~p~~ 202 (325)
T PRK08699 187 -AE-P--EER-LAFHSGAPLF 202 (325)
T ss_pred -Cc-H--HHH-HHHhCCChhh
Confidence 11 1 111 3468898864
No 312
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.46 E-value=0.29 Score=48.43 Aligned_cols=117 Identities=15% Similarity=0.097 Sum_probs=63.1
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEe-----------------CCCCC---HHHHHHHHHHHhcc
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNV-----------------NTDGN---ISDIQEIILERLKV 232 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~v-----------------s~~~~---~~~i~~~i~~~l~~ 232 (984)
..-.+++|+|..|.|||||++....... .....+++.- .+... ...+.+.+.
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~----- 95 (173)
T cd03230 24 EKGEIYGLLGPNGAGKTTLIKIILGLLK---PDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLK----- 95 (173)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhh-----
Confidence 4567999999999999999999444332 1223333211 11100 001111111
Q ss_pred Cccccch-HHHHHHHHHHHcCCcEEEEEECCCCccchhh---h--ccc-cCCCCcEEEEEcCCccccc-cCCceEEc
Q 001999 233 NAKELDN-AQRADNISKELKDKRYVLFLDGVSSEINFKE---I--GIH-DDHGRGKVVFACRSREFCW-QADDVIHV 301 (984)
Q Consensus 233 ~~~~~~~-~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~---~--~~~-~~~~gs~ilvTTR~~~v~~-~~~~~~~l 301 (984)
.+. +...-.|...+..++=++++|+--...|... + .+. -...|..||++|.+..... .+...+.+
T Consensus 96 ----LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l 168 (173)
T cd03230 96 ----LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAIL 168 (173)
T ss_pred ----cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEE
Confidence 122 3334456777888899999999866433221 1 111 1223678888888766543 33334333
No 313
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=94.42 E-value=0.077 Score=49.93 Aligned_cols=46 Identities=24% Similarity=0.325 Sum_probs=34.3
Q ss_pred EEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHHHHHhccCcc
Q 001999 177 KICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEIILERLKVNAK 235 (984)
Q Consensus 177 vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~ 235 (984)
+|.|-|++|+||||+|+...+... -.| | +.-.+.++|++..+.+..
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~g--l~~-----v------saG~iFR~~A~e~gmsl~ 47 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLG--LKL-----V------SAGTIFREMARERGMSLE 47 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhC--Cce-----e------eccHHHHHHHHHcCCCHH
Confidence 689999999999999999777765 222 1 233678888888776543
No 314
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.40 E-value=0.13 Score=57.38 Aligned_cols=91 Identities=19% Similarity=0.286 Sum_probs=57.9
Q ss_pred CCCCchHH---HHHHHHHHhccC---------CccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHH
Q 001999 154 SKFPSHKE---YVETLEKHLSSG---------GLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISD 221 (984)
Q Consensus 154 ~~~vgr~~---~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~ 221 (984)
+++-|-|+ ++++|+++|.++ =.+-|-++|++|.|||-||+++.-... -. +|.+.+..||..-
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~--VP----FF~~sGSEFdEm~ 377 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAG--VP----FFYASGSEFDEMF 377 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccC--CC----eEeccccchhhhh
Confidence 44567765 667788999872 257788999999999999999776655 22 2344444444221
Q ss_pred HHHHHHHHhccCccccchHHHHHHHHHHHc-CCcEEEEEECCCC
Q 001999 222 IQEIILERLKVNAKELDNAQRADNISKELK-DKRYVLFLDGVSS 264 (984)
Q Consensus 222 i~~~i~~~l~~~~~~~~~~~~~~~l~~~L~-~kr~LlVlDdv~~ 264 (984)
-.. ...+++.|...-+ .-+++|.+|.++.
T Consensus 378 ------VGv--------GArRVRdLF~aAk~~APcIIFIDEiDa 407 (752)
T KOG0734|consen 378 ------VGV--------GARRVRDLFAAAKARAPCIIFIDEIDA 407 (752)
T ss_pred ------hcc--------cHHHHHHHHHHHHhcCCeEEEEechhh
Confidence 000 0334444444443 4589999999864
No 315
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.38 E-value=0.28 Score=49.77 Aligned_cols=90 Identities=21% Similarity=0.296 Sum_probs=57.7
Q ss_pred CCCCchHHHHHHHHHHhcc-------------CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHH
Q 001999 154 SKFPSHKEYVETLEKHLSS-------------GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNIS 220 (984)
Q Consensus 154 ~~~vgr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~ 220 (984)
+++-|-.+.++++.+...- +..+-|..+|++|.|||-+|+++.++.. ..|-.++ . .+
T Consensus 177 ~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtd--acfirvi-----g---se 246 (435)
T KOG0729|consen 177 SDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTD--ACFIRVI-----G---SE 246 (435)
T ss_pred ccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccC--ceEEeeh-----h---HH
Confidence 4456778888888766532 4567888999999999999999888876 5552222 1 11
Q ss_pred HHHHHHHHHhccCccccchHHHHHHHHHHHcC-CcEEEEEECCC
Q 001999 221 DIQEIILERLKVNAKELDNAQRADNISKELKD-KRYVLFLDGVS 263 (984)
Q Consensus 221 ~i~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~-kr~LlVlDdv~ 263 (984)
-+++-+-+ ......+|.+.-++ |-++|.+|.+.
T Consensus 247 lvqkyvge----------garmvrelf~martkkaciiffdeid 280 (435)
T KOG0729|consen 247 LVQKYVGE----------GARMVRELFEMARTKKACIIFFDEID 280 (435)
T ss_pred HHHHHhhh----------hHHHHHHHHHHhcccceEEEEeeccc
Confidence 11111111 13455566666665 56888899874
No 316
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=94.34 E-value=0.19 Score=50.79 Aligned_cols=35 Identities=23% Similarity=0.443 Sum_probs=26.0
Q ss_pred HHHHhccCCccEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 166 LEKHLSSGGLKKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 166 l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
.+..+..+.-++..|.|.+|.||||+++.....+.
T Consensus 9 a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~~ 43 (196)
T PF13604_consen 9 AVRAILTSGDRVSVLQGPAGTGKTTLLKALAEALE 43 (196)
T ss_dssp HHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHHH
Confidence 34444445567899999999999999998555554
No 317
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.29 E-value=0.023 Score=34.40 Aligned_cols=21 Identities=29% Similarity=0.559 Sum_probs=11.8
Q ss_pred CCcEEEecCccccccchhhhc
Q 001999 592 KLEILDVRHTRIQCLPSEIGQ 612 (984)
Q Consensus 592 ~L~~L~l~~~~l~~lp~~~~~ 612 (984)
+|++||+++|+++.+|.++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 355666666666666555443
No 318
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.29 E-value=0.015 Score=35.27 Aligned_cols=18 Identities=33% Similarity=0.674 Sum_probs=8.5
Q ss_pred ccEEeccCCCCccCCcch
Q 001999 546 LQLLDLHDTSIRCLPPSI 563 (984)
Q Consensus 546 Lr~L~L~~~~i~~lp~~i 563 (984)
|++|||++|.++.+|++|
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 444555555444444443
No 319
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.27 E-value=2.3 Score=47.35 Aligned_cols=71 Identities=15% Similarity=0.124 Sum_probs=45.3
Q ss_pred cEEE-EEcCCccccc-------cCCceEEccCCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCCchHHHHHHHH
Q 001999 280 GKVV-FACRSREFCW-------QADDVIHVERLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGMPYMLKLIGKE 351 (984)
Q Consensus 280 s~il-vTTR~~~v~~-------~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~~~~~ 351 (984)
-||| +||-..+-.. ..+..+.+.--+.+....||+++.+.+. .+ .++.+|.+.-.|.-+.-..++..
T Consensus 338 ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~-~h----~L~~eie~l~~~~~~tPA~V~e~ 412 (457)
T KOG0743|consen 338 ERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE-DH----RLFDEIERLIEETEVTPAQVAEE 412 (457)
T ss_pred ceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC-Cc----chhHHHHHHhhcCccCHHHHHHH
Confidence 3554 5776655433 4456789999999999999999987642 12 25566666656665554555554
Q ss_pred -hhcC
Q 001999 352 -LVNQ 355 (984)
Q Consensus 352 -l~~~ 355 (984)
|.++
T Consensus 413 lm~~~ 417 (457)
T KOG0743|consen 413 LMKNK 417 (457)
T ss_pred Hhhcc
Confidence 4444
No 320
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.25 E-value=0.47 Score=50.40 Aligned_cols=36 Identities=14% Similarity=0.190 Sum_probs=29.2
Q ss_pred HHHHHhccCCccEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 165 TLEKHLSSGGLKKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 165 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
+..+++.+.+..++.|+|..|.|||||+.......+
T Consensus 94 ~~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~ 129 (290)
T PRK10463 94 RNRARFAARKQLVLNLVSSPGSGKTTLLTETLMRLK 129 (290)
T ss_pred HHHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 344555567899999999999999999999666654
No 321
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=94.25 E-value=0.25 Score=49.69 Aligned_cols=49 Identities=12% Similarity=0.215 Sum_probs=36.4
Q ss_pred CCCCCCchHHHHHHHHHHh----ccCCccEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 152 HASKFPSHKEYVETLEKHL----SSGGLKKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 152 ~~~~~vgr~~~~~~l~~~L----~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
+...++|.+...+.+++-- ..-...-+-++|.-|+||++|+++....+.
T Consensus 58 ~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~ 110 (287)
T COG2607 58 DLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYA 110 (287)
T ss_pred CHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHH
Confidence 3456799999888887543 333455677999999999999999555444
No 322
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=94.24 E-value=0.33 Score=46.32 Aligned_cols=101 Identities=17% Similarity=0.267 Sum_probs=55.3
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHHHHHhccCccccch-HHHHHHHHHHHc
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEIILERLKVNAKELDN-AQRADNISKELK 251 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~-~~~~~~l~~~L~ 251 (984)
..-.+++|+|..|.|||||++......+ .....+|+.-. ..++.-.. .+. +...-.|.+.+-
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~~~-------------~~i~~~~~-lS~G~~~rv~laral~ 86 (144)
T cd03221 24 NPGDRIGLVGRNGAGKSTLLKLIAGELE---PDEGIVTWGST-------------VKIGYFEQ-LSGGEKMRLALAKLLL 86 (144)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCCC---CCceEEEECCe-------------EEEEEEcc-CCHHHHHHHHHHHHHh
Confidence 4567999999999999999999444332 12333333210 00000000 222 334444667777
Q ss_pred CCcEEEEEECCCCccchh---hh--ccccCCCCcEEEEEcCCcccc
Q 001999 252 DKRYVLFLDGVSSEINFK---EI--GIHDDHGRGKVVFACRSREFC 292 (984)
Q Consensus 252 ~kr~LlVlDdv~~~~~~~---~~--~~~~~~~gs~ilvTTR~~~v~ 292 (984)
.+.-++++|+--...|.. .+ .+... +..||++|.+...+
T Consensus 87 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~ 130 (144)
T cd03221 87 ENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFL 130 (144)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHH
Confidence 788899999976543221 11 11111 34677777765543
No 323
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=94.19 E-value=0.098 Score=49.56 Aligned_cols=42 Identities=19% Similarity=0.294 Sum_probs=29.2
Q ss_pred CchHHHHHHHHHHhcc--CCccEEEEEcCCCChHHHHHHHhhhh
Q 001999 157 PSHKEYVETLEKHLSS--GGLKKICICGPLGVGKTTIMENSHDS 198 (984)
Q Consensus 157 vgr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~~~~~ 198 (984)
||.-..+.++.+.+.. .....|.|.|..|+||+++|+..+..
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~ 44 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRY 44 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhh
Confidence 4666666777666654 44566789999999999999994444
No 324
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=94.18 E-value=0.23 Score=55.77 Aligned_cols=88 Identities=19% Similarity=0.263 Sum_probs=54.7
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCC-HHHHHHHHHHHhccC--------ccccch----
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGN-ISDIQEIILERLKVN--------AKELDN---- 239 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~-~~~i~~~i~~~l~~~--------~~~~~~---- 239 (984)
.....++|+|..|+|||||++....... .+.++.+-+.+... +.++.++++..-+.. .+....
T Consensus 160 ~~GqrigI~G~sG~GKSTLL~~I~~~~~----~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~ 235 (444)
T PRK08972 160 GKGQRMGLFAGSGVGKSVLLGMMTRGTT----ADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLK 235 (444)
T ss_pred cCCCEEEEECCCCCChhHHHHHhccCCC----CCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHH
Confidence 4567899999999999999988654432 25666677776543 455666654432111 111111
Q ss_pred -HHHHHHHHHHH--cCCcEEEEEECCCC
Q 001999 240 -AQRADNISKEL--KDKRYVLFLDGVSS 264 (984)
Q Consensus 240 -~~~~~~l~~~L--~~kr~LlVlDdv~~ 264 (984)
....-.+.+++ +|+++|+++||+-.
T Consensus 236 a~~~A~tiAEyfrd~G~~VLl~~DslTR 263 (444)
T PRK08972 236 GCETATTIAEYFRDQGLNVLLLMDSLTR 263 (444)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEcChHH
Confidence 12223345555 58999999999954
No 325
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=94.14 E-value=0.036 Score=51.65 Aligned_cols=21 Identities=43% Similarity=0.528 Sum_probs=18.7
Q ss_pred EEEEcCCCChHHHHHHHhhhh
Q 001999 178 ICICGPLGVGKTTIMENSHDS 198 (984)
Q Consensus 178 i~I~G~gGiGKTtLa~~~~~~ 198 (984)
|+|.|+.|+||||+|+...++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999996555
No 326
>PRK06217 hypothetical protein; Validated
Probab=94.13 E-value=0.19 Score=50.29 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHhhhhcc
Q 001999 177 KICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 177 vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
.|.|.|.+|+||||+|+...+...
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 489999999999999999666653
No 327
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.11 E-value=0.41 Score=47.68 Aligned_cols=24 Identities=29% Similarity=0.473 Sum_probs=21.0
Q ss_pred CCccEEEEEcCCCChHHHHHHHhh
Q 001999 173 GGLKKICICGPLGVGKTTIMENSH 196 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~ 196 (984)
....|++|+|++|+|||||.+..+
T Consensus 26 ~~Gevv~iiGpSGSGKSTlLRclN 49 (240)
T COG1126 26 EKGEVVVIIGPSGSGKSTLLRCLN 49 (240)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHH
Confidence 456799999999999999999943
No 328
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.10 E-value=0.13 Score=56.95 Aligned_cols=74 Identities=18% Similarity=0.245 Sum_probs=49.0
Q ss_pred CCCchHHHHHHHHHHhcc--------------CCccEEEEEcCCCChHHHHHHHhhhhcccCCCC---CeEEEEEeCC-C
Q 001999 155 KFPSHKEYVETLEKHLSS--------------GGLKKICICGPLGVGKTTIMENSHDSVGESGRF---DIIFWVNVNT-D 216 (984)
Q Consensus 155 ~~vgr~~~~~~l~~~L~~--------------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F---~~~~wv~vs~-~ 216 (984)
.++|.++.++.+...+.. ...+-|.++|++|+|||++|+.....+. ..| +...++..+. .
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~--~~fi~vdat~~~e~g~vG 90 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLAN--APFIKVEATKFTEVGYVG 90 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhC--CeEEEeecceeecCCccc
Confidence 478988888887655542 1236788999999999999999777765 444 3322332222 2
Q ss_pred CCHHHHHHHHHHHh
Q 001999 217 GNISDIQEIILERL 230 (984)
Q Consensus 217 ~~~~~i~~~i~~~l 230 (984)
.++..+.+.+.+..
T Consensus 91 ~dvE~i~r~l~e~A 104 (441)
T TIGR00390 91 RDVESMVRDLTDAA 104 (441)
T ss_pred CCHHHHHHHHHHHH
Confidence 36777777666554
No 329
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=94.10 E-value=2.1 Score=50.14 Aligned_cols=160 Identities=16% Similarity=0.147 Sum_probs=95.4
Q ss_pred CCCchHHHHHHHHHHhcc-----CCccEEEEEcCCCChHHHHHHHhhhhcc------cCCCCCeEEEEEeCCCCCHHHHH
Q 001999 155 KFPSHKEYVETLEKHLSS-----GGLKKICICGPLGVGKTTIMENSHDSVG------ESGRFDIIFWVNVNTDGNISDIQ 223 (984)
Q Consensus 155 ~~vgr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~~~~~~~------~~~~F~~~~wv~vs~~~~~~~i~ 223 (984)
.+-+|+.+..+|-+++.. .....+-|.|.+|.|||..+..+-+.++ +...| ..+.|+.-.-....++.
T Consensus 397 sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f-~yveINgm~l~~~~~~Y 475 (767)
T KOG1514|consen 397 SLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKF-DYVEINGLRLASPREIY 475 (767)
T ss_pred cccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCc-cEEEEcceeecCHHHHH
Confidence 356899999999887754 3345899999999999999998433221 12344 23445544556788999
Q ss_pred HHHHHHhccCccccchHHHHHHHHHHHc-----CCcEEEEEECCCCc-----cchhhhccc-cCCCCcEEEEEcCCcc--
Q 001999 224 EIILERLKVNAKELDNAQRADNISKELK-----DKRYVLFLDGVSSE-----INFKEIGIH-DDHGRGKVVFACRSRE-- 290 (984)
Q Consensus 224 ~~i~~~l~~~~~~~~~~~~~~~l~~~L~-----~kr~LlVlDdv~~~-----~~~~~~~~~-~~~~gs~ilvTTR~~~-- 290 (984)
..|..++.+....+. ...+.|..+.. .+.++|++|++... +.+-.+ +- ...++||++|-+=..-
T Consensus 476 ~~I~~~lsg~~~~~~--~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~-fdWpt~~~sKLvvi~IaNTmd 552 (767)
T KOG1514|consen 476 EKIWEALSGERVTWD--AALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNI-FDWPTLKNSKLVVIAIANTMD 552 (767)
T ss_pred HHHHHhcccCcccHH--HHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHH-hcCCcCCCCceEEEEeccccc
Confidence 999999977655443 22333333332 35789999987542 111111 11 3456777766442111
Q ss_pred ---------ccc-cCCceEEccCCChHHHHHHHHHHhC
Q 001999 291 ---------FCW-QADDVIHVERLSPREAKKLFWEVVG 318 (984)
Q Consensus 291 ---------v~~-~~~~~~~l~~L~~~~~~~Lf~~~~~ 318 (984)
++. -....+...|.++++-.+....+..
T Consensus 553 lPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~ 590 (767)
T KOG1514|consen 553 LPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLK 590 (767)
T ss_pred CHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhc
Confidence 111 2234566666776666665555443
No 330
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.08 E-value=0.061 Score=55.58 Aligned_cols=23 Identities=35% Similarity=0.432 Sum_probs=20.1
Q ss_pred EEEEcCCCChHHHHHHHhhhhcc
Q 001999 178 ICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 178 i~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
|.|+|++|+||||+|+...+...
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~g 31 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKEN 31 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 88999999999999999766643
No 331
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.03 E-value=0.49 Score=51.93 Aligned_cols=88 Identities=15% Similarity=0.134 Sum_probs=49.1
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCC--HHHHHHHHHHHhccCccccch-HHHHHHHHHHH
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGN--ISDIQEIILERLKVNAKELDN-AQRADNISKEL 250 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~--~~~i~~~i~~~l~~~~~~~~~-~~~~~~l~~~L 250 (984)
..++++++|+.|+||||++......... .. ..+.+|+.. ++- ..+-++...+.++.......+ +++...+...-
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~-~g-~~V~lItaD-tyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~ 281 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLK-QN-RTVGFITTD-TFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMT 281 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH-cC-CeEEEEeCC-ccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHH
Confidence 5689999999999999999984443321 22 245555543 332 244455555555544322222 44444443322
Q ss_pred c-CCcEEEEEECCCC
Q 001999 251 K-DKRYVLFLDGVSS 264 (984)
Q Consensus 251 ~-~kr~LlVlDdv~~ 264 (984)
. +..=+|++|-.-.
T Consensus 282 ~~~~~D~VLIDTAGr 296 (407)
T PRK12726 282 YVNCVDHILIDTVGR 296 (407)
T ss_pred hcCCCCEEEEECCCC
Confidence 1 3445677787643
No 332
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=94.02 E-value=1.8 Score=43.78 Aligned_cols=189 Identities=12% Similarity=0.154 Sum_probs=101.5
Q ss_pred chHHHHHHHHHHhcc-------------CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHH
Q 001999 158 SHKEYVETLEKHLSS-------------GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQE 224 (984)
Q Consensus 158 gr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~ 224 (984)
|.+..+++|.+.+.- .+.+-+.++|++|.|||-||+.+++... ..|+.||.. ++.+
T Consensus 151 gLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~-------c~firvsgs----elvq 219 (404)
T KOG0728|consen 151 GLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTD-------CTFIRVSGS----ELVQ 219 (404)
T ss_pred cHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcc-------eEEEEechH----HHHH
Confidence 457777777665531 4678889999999999999999876653 456777653 2322
Q ss_pred HHHHHhccCccccchHHHHHHHHHHH-cCCcEEEEEECCCCcc------------c-----hhhh----ccccCCCCcEE
Q 001999 225 IILERLKVNAKELDNAQRADNISKEL-KDKRYVLFLDGVSSEI------------N-----FKEI----GIHDDHGRGKV 282 (984)
Q Consensus 225 ~i~~~l~~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~~------------~-----~~~~----~~~~~~~gs~i 282 (984)
..+.+ ......++.-.- ..-+-+|+.|.+.+.. + ++.+ +| ...++-||
T Consensus 220 k~ige---------gsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgf-eatknikv 289 (404)
T KOG0728|consen 220 KYIGE---------GSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGF-EATKNIKV 289 (404)
T ss_pred HHhhh---------hHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcccc-ccccceEE
Confidence 22211 011222222222 2356788888876420 1 1111 22 23455688
Q ss_pred EEEcCCccccc-------cCCceEEccCCChHHHHHHHHHHhCCC-CCCCcchHHHHHHHHHHcCCCchHHHHHHHH--h
Q 001999 283 VFACRSREFCW-------QADDVIHVERLSPREAKKLFWEVVGVN-LKKNPDIEQEADSIVEECGGMPYMLKLIGKE--L 352 (984)
Q Consensus 283 lvTTR~~~v~~-------~~~~~~~l~~L~~~~~~~Lf~~~~~~~-~~~~~~l~~~~~~I~~~c~GlPlai~~~~~~--l 352 (984)
|++|..-++.. .-+..++.++=+++.-.++++-+.-.- ...-.+++.+|+++....|.--.++.+-|++ |
T Consensus 290 imatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~al 369 (404)
T KOG0728|consen 290 IMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYAL 369 (404)
T ss_pred EEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHH
Confidence 87776655543 345577888877776667766543211 1122345555555543322222344444443 3
Q ss_pred hcC---ccHHHHHHHHHH
Q 001999 353 VNQ---SEVAIWRATVDD 367 (984)
Q Consensus 353 ~~~---~~~~~w~~~l~~ 367 (984)
+.+ -+.++++-+..+
T Consensus 370 rerrvhvtqedfemav~k 387 (404)
T KOG0728|consen 370 RERRVHVTQEDFEMAVAK 387 (404)
T ss_pred HHhhccccHHHHHHHHHH
Confidence 333 344555544433
No 333
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=93.97 E-value=0.33 Score=48.02 Aligned_cols=113 Identities=12% Similarity=0.140 Sum_probs=57.8
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCC--CCCHHHHHHHHHHHhccCccc------------cc
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNT--DGNISDIQEIILERLKVNAKE------------LD 238 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~--~~~~~~i~~~i~~~l~~~~~~------------~~ 238 (984)
..-.+++|+|..|.|||||.+......+ .....+++.-.. ..+.....+ .++.-.+. .+
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~~----~i~~~~q~~~~~~~tv~~~lLS 98 (173)
T cd03246 26 EPGESLAIIGPSGSGKSTLARLILGLLR---PTSGRVRLDGADISQWDPNELGD----HVGYLPQDDELFSGSIAENILS 98 (173)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccC---CCCCeEEECCEEcccCCHHHHHh----heEEECCCCccccCcHHHHCcC
Confidence 4567999999999999999999444332 122222221100 011111111 11100000 12
Q ss_pred h-HHHHHHHHHHHcCCcEEEEEECCCCccchh------hhccccCCCCcEEEEEcCCcccc
Q 001999 239 N-AQRADNISKELKDKRYVLFLDGVSSEINFK------EIGIHDDHGRGKVVFACRSREFC 292 (984)
Q Consensus 239 ~-~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~------~~~~~~~~~gs~ilvTTR~~~v~ 292 (984)
. +...-.|.+.+-.+.-+++||+-....|.. ++.......|..||++|.+....
T Consensus 99 ~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~ 159 (173)
T cd03246 99 GGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETL 159 (173)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 2 334444666677777899999986643322 11111122466788888765543
No 334
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=93.95 E-value=0.25 Score=55.78 Aligned_cols=89 Identities=17% Similarity=0.172 Sum_probs=51.1
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcc-------Cccccch-----H
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEIILERLKV-------NAKELDN-----A 240 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~-------~~~~~~~-----~ 240 (984)
..-..++|+|..|+|||||++......+ ....++++.--+.-++.++....+..... +.+.... .
T Consensus 163 ~~Gqri~I~G~SGsGKTTLL~~Ia~l~~---pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~ 239 (450)
T PRK06002 163 CAGQRIGIFAGSGVGKSTLLAMLARADA---FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAP 239 (450)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC---CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHH
Confidence 4567899999999999999988554432 22244444433444555554444433211 1111111 2
Q ss_pred HHHHHHHHHH--cCCcEEEEEECCCC
Q 001999 241 QRADNISKEL--KDKRYVLFLDGVSS 264 (984)
Q Consensus 241 ~~~~~l~~~L--~~kr~LlVlDdv~~ 264 (984)
...-.+.+++ +|+.+|+++||+-.
T Consensus 240 ~~a~~iAEyfrd~G~~Vll~~DslTr 265 (450)
T PRK06002 240 LTATAIAEYFRDRGENVLLIVDSVTR 265 (450)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchHH
Confidence 2223344444 48999999999854
No 335
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.86 E-value=0.47 Score=48.64 Aligned_cols=24 Identities=29% Similarity=0.310 Sum_probs=20.8
Q ss_pred CCccEEEEEcCCCChHHHHHHHhh
Q 001999 173 GGLKKICICGPLGVGKTTIMENSH 196 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~ 196 (984)
..-.+++|+|..|.|||||++...
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~ 47 (210)
T cd03269 24 EKGEIFGLLGPNGAGKTTTIRMIL 47 (210)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHh
Confidence 456799999999999999999943
No 336
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=93.85 E-value=0.3 Score=52.06 Aligned_cols=88 Identities=22% Similarity=0.202 Sum_probs=45.6
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHH--HHHHHHHHHhccCccc----cch-HHHHHH
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNIS--DIQEIILERLKVNAKE----LDN-AQRADN 245 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~--~i~~~i~~~l~~~~~~----~~~-~~~~~~ 245 (984)
.+.++|.++|++|+||||.+........ ..-..+..++ .+.+... +-++...+..+..... .+. ......
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~--~~g~~V~li~-~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~ 146 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLK--KQGKSVLLAA-GDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDA 146 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHH--hcCCEEEEEe-CCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHH
Confidence 3568999999999999999988544443 2212344444 3333332 2223334444422111 011 222233
Q ss_pred HHHHHcCCcEEEEEECCC
Q 001999 246 ISKELKDKRYVLFLDGVS 263 (984)
Q Consensus 246 l~~~L~~kr~LlVlDdv~ 263 (984)
+........=++++|-.-
T Consensus 147 l~~~~~~~~D~ViIDT~G 164 (272)
T TIGR00064 147 IQKAKARNIDVVLIDTAG 164 (272)
T ss_pred HHHHHHCCCCEEEEeCCC
Confidence 444444445577788764
No 337
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.82 E-value=0.34 Score=47.84 Aligned_cols=113 Identities=16% Similarity=0.202 Sum_probs=57.4
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCC--CCCHHHHHHHHHHHhccCccc------------cc
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNT--DGNISDIQEIILERLKVNAKE------------LD 238 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~--~~~~~~i~~~i~~~l~~~~~~------------~~ 238 (984)
..-.+++|+|..|.|||||.+......+ .....+++.-.. ..+..... ..++.-.+. .+
T Consensus 26 ~~G~~~~l~G~nGsGKstLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~----~~i~~~~~~~~~~~~t~~e~lLS 98 (171)
T cd03228 26 KPGEKVAIVGPSGSGKSTLLKLLLRLYD---PTSGEILIDGVDLRDLDLESLR----KNIAYVPQDPFLFSGTIRENILS 98 (171)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCCEEEECCEEhhhcCHHHHH----hhEEEEcCCchhccchHHHHhhC
Confidence 4567999999999999999999544432 122223221100 00111110 111100000 11
Q ss_pred h-HHHHHHHHHHHcCCcEEEEEECCCCccchh---hh--ccccCCCCcEEEEEcCCcccc
Q 001999 239 N-AQRADNISKELKDKRYVLFLDGVSSEINFK---EI--GIHDDHGRGKVVFACRSREFC 292 (984)
Q Consensus 239 ~-~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~---~~--~~~~~~~gs~ilvTTR~~~v~ 292 (984)
. +...-.|...+-.+.-+++||+-....|.. .+ .+.....+..||++|.+....
T Consensus 99 ~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~ 158 (171)
T cd03228 99 GGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTI 158 (171)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHH
Confidence 1 333344666777788899999976543321 11 111112356788888765543
No 338
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=93.81 E-value=0.33 Score=53.20 Aligned_cols=58 Identities=16% Similarity=0.094 Sum_probs=40.5
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhcccCC----CCCeEEEEEeCCCCCHHHHHHHHHHHhc
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSVGESG----RFDIIFWVNVNTDGNISDIQEIILERLK 231 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~----~F~~~~wv~vs~~~~~~~i~~~i~~~l~ 231 (984)
....++-|+|.+|+||||++.+....+.... .=..++||+....|+..++.+ +++.++
T Consensus 93 ~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~-~~~~~g 154 (310)
T TIGR02236 93 ETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQ-MAEARG 154 (310)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHH-HHHHcC
Confidence 3568999999999999999998443322000 113799999988888887654 445444
No 339
>PRK04040 adenylate kinase; Provisional
Probab=93.81 E-value=0.16 Score=50.88 Aligned_cols=25 Identities=32% Similarity=0.598 Sum_probs=21.9
Q ss_pred cEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 176 KKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
.+|+|+|++|+||||+++...+...
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 5899999999999999999776663
No 340
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=93.81 E-value=0.17 Score=49.23 Aligned_cols=24 Identities=33% Similarity=0.538 Sum_probs=20.4
Q ss_pred ccEEEEEcCCCChHHHHHHHhhhh
Q 001999 175 LKKICICGPLGVGKTTIMENSHDS 198 (984)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~~~~~ 198 (984)
..++.|.|++|+|||||+++..++
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~ 27 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLED 27 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 468899999999999999995443
No 341
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.79 E-value=0.57 Score=49.28 Aligned_cols=128 Identities=20% Similarity=0.259 Sum_probs=65.3
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhhcccC-C--CCC--eEEEEEeC----CCCCHHHHH--------------HHHHHHh
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDSVGES-G--RFD--IIFWVNVN----TDGNISDIQ--------------EIILERL 230 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~-~--~F~--~~~wv~vs----~~~~~~~i~--------------~~i~~~l 230 (984)
.-.+++|+|..|+|||||++......+.. . .++ .+.++.-. ...++.+.+ .++++.+
T Consensus 24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l 103 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPL 103 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHc
Confidence 45799999999999999999943333200 1 111 12222111 011222222 2233333
Q ss_pred ccCc------cccch-HHHHHHHHHHHcCCcEEEEEECCCCccchhhh-----ccc--cCCCCcEEEEEcCCccccc-cC
Q 001999 231 KVNA------KELDN-AQRADNISKELKDKRYVLFLDGVSSEINFKEI-----GIH--DDHGRGKVVFACRSREFCW-QA 295 (984)
Q Consensus 231 ~~~~------~~~~~-~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~-----~~~--~~~~gs~ilvTTR~~~v~~-~~ 295 (984)
+... ...+. +...-.|...|-.+.=+++||+--...|.... .+. ....|..||++|.+...+. -+
T Consensus 104 ~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~ 183 (246)
T cd03237 104 QIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLA 183 (246)
T ss_pred CCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC
Confidence 3221 01111 33334466777788889999997665433211 111 1234677888887765544 33
Q ss_pred CceEEc
Q 001999 296 DDVIHV 301 (984)
Q Consensus 296 ~~~~~l 301 (984)
...+.+
T Consensus 184 d~i~~l 189 (246)
T cd03237 184 DRLIVF 189 (246)
T ss_pred CEEEEE
Confidence 444444
No 342
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.79 E-value=0.019 Score=55.95 Aligned_cols=64 Identities=19% Similarity=0.266 Sum_probs=34.3
Q ss_pred CCcceeecccccccccccccccccCcccccceeeecccccccccCcHHHHhhcccccEEeecccch
Q 001999 819 QGLNNLHIKNLPKLMHIWVGPIASGSLNSLRTLRVKICHSIKTLFSKEMVAQLNELQDLQVEDCQM 884 (984)
Q Consensus 819 ~~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~l~~l~~L~~L~l~~c~~ 884 (984)
++++.|.+.+|..+.++.-.... +-.|+|+.|+|++|+.+++- ...++..+++|+.|.|.+-+.
T Consensus 125 ~~i~~l~l~~ck~~dD~~L~~l~-~~~~~L~~L~lsgC~rIT~~-GL~~L~~lknLr~L~l~~l~~ 188 (221)
T KOG3864|consen 125 RSIKSLSLANCKYFDDWCLERLG-GLAPSLQDLDLSGCPRITDG-GLACLLKLKNLRRLHLYDLPY 188 (221)
T ss_pred chhhhheeccccchhhHHHHHhc-ccccchheeeccCCCeechh-HHHHHHHhhhhHHHHhcCchh
Confidence 34444444444444443221111 24566777777777777665 455666666666666665444
No 343
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=93.79 E-value=0.41 Score=52.09 Aligned_cols=60 Identities=17% Similarity=0.240 Sum_probs=42.0
Q ss_pred CCccEEEEEcCCCChHHHHHHHhh--hhccc-C-CCCCeEEEEEeCCCCCHHHHHHHHHHHhccC
Q 001999 173 GGLKKICICGPLGVGKTTIMENSH--DSVGE-S-GRFDIIFWVNVNTDGNISDIQEIILERLKVN 233 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~--~~~~~-~-~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~ 233 (984)
....++-|+|.+|+|||+|+.+.. -.... . ..=..++||+....|+..++.+ +++.++.+
T Consensus 94 ~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~d 157 (313)
T TIGR02238 94 ESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGVD 157 (313)
T ss_pred cCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCCC
Confidence 456799999999999999998722 22210 0 1124789999999899888764 56666543
No 344
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=93.77 E-value=0.32 Score=54.78 Aligned_cols=88 Identities=16% Similarity=0.167 Sum_probs=54.0
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCC-HHHHHHHHHHHhccC--------ccccch----
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGN-ISDIQEIILERLKVN--------AKELDN---- 239 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~-~~~i~~~i~~~l~~~--------~~~~~~---- 239 (984)
.+...++|+|..|+|||||+++...... -+.++++-+.+... +.+..++.+..-+.. .+....
T Consensus 156 ~~Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~ 231 (442)
T PRK08927 156 CRGQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQ 231 (442)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHH
Confidence 5678899999999999999988665543 24556676766543 445555444432111 111111
Q ss_pred -HHHHHHHHHHH--cCCcEEEEEECCCC
Q 001999 240 -AQRADNISKEL--KDKRYVLFLDGVSS 264 (984)
Q Consensus 240 -~~~~~~l~~~L--~~kr~LlVlDdv~~ 264 (984)
....-.+.+++ +|+.+|+++||+-.
T Consensus 232 a~~~a~tiAEyfrd~G~~Vll~~DslTr 259 (442)
T PRK08927 232 AAYLTLAIAEYFRDQGKDVLCLMDSVTR 259 (442)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeCcHH
Confidence 22223345555 58999999999954
No 345
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.77 E-value=0.12 Score=48.92 Aligned_cols=75 Identities=21% Similarity=0.333 Sum_probs=43.9
Q ss_pred EEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHHHHHhccCccccchHHHHHHHHHHHcCCcEEE
Q 001999 178 ICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEIILERLKVNAKELDNAQRADNISKELKDKRYVL 257 (984)
Q Consensus 178 i~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~kr~Ll 257 (984)
|.++|+.|+|||+||+...+... . ...-+.++...+..++....--. . .........+...+ .+..++
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~--~---~~~~i~~~~~~~~~dl~g~~~~~-~-~~~~~~~~~l~~a~-----~~~~il 69 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLG--R---PVIRINCSSDTTEEDLIGSYDPS-N-GQFEFKDGPLVRAM-----RKGGIL 69 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHT--C---EEEEEE-TTTSTHHHHHCEEET--T-TTTCEEE-CCCTTH-----HEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhh--c---ceEEEEeccccccccceeeeeec-c-cccccccccccccc-----cceeEE
Confidence 57899999999999999776664 2 34456778877777665433211 0 00001001111011 178899
Q ss_pred EEECCCC
Q 001999 258 FLDGVSS 264 (984)
Q Consensus 258 VlDdv~~ 264 (984)
|||++..
T Consensus 70 ~lDEin~ 76 (139)
T PF07728_consen 70 VLDEINR 76 (139)
T ss_dssp EESSCGG
T ss_pred EECCccc
Confidence 9999974
No 346
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=93.76 E-value=0.4 Score=52.67 Aligned_cols=60 Identities=17% Similarity=0.136 Sum_probs=41.9
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhccc---C-CCCCeEEEEEeCCCCCHHHHHHHHHHHhccC
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSVGE---S-GRFDIIFWVNVNTDGNISDIQEIILERLKVN 233 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~---~-~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~ 233 (984)
....++-|+|.+|+|||+|+....-.+.. . ..-..++|++....|+..++. +|++.++.+
T Consensus 121 ~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~~~ 184 (342)
T PLN03186 121 ETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFGLN 184 (342)
T ss_pred cCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcCCC
Confidence 35688999999999999999873322210 0 112379999999999988764 556666543
No 347
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=93.76 E-value=0.24 Score=56.32 Aligned_cols=91 Identities=18% Similarity=0.194 Sum_probs=58.3
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCC-CHHHHHHHHHHHhccC--------ccccch----
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDG-NISDIQEIILERLKVN--------AKELDN---- 239 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~--------~~~~~~---- 239 (984)
.+-.-++|+|..|+|||||+.+....+.. .+-+.++++-+.+.. .+.++.+++...-... .+....
T Consensus 141 gkGQR~gIfa~~G~GKt~Ll~~~~~~~~~-~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~ 219 (461)
T PRK12597 141 AKGGKTGLFGGAGVGKTVLMMELIFNISK-QHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMR 219 (461)
T ss_pred ccCCEEEeecCCCCChhHHHHHHHHHHHh-hCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHH
Confidence 46678999999999999999884444431 355788888887654 4566666665432111 111111
Q ss_pred -HHHHHHHHHHH---cCCcEEEEEECCCC
Q 001999 240 -AQRADNISKEL---KDKRYVLFLDGVSS 264 (984)
Q Consensus 240 -~~~~~~l~~~L---~~kr~LlVlDdv~~ 264 (984)
....-.+.+++ +|+++|+++||+-.
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLl~~DslTR 248 (461)
T PRK12597 220 VVLTGLTIAEYLRDEEKEDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEeccchH
Confidence 23334456666 38999999999954
No 348
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=93.76 E-value=0.28 Score=52.49 Aligned_cols=27 Identities=26% Similarity=0.222 Sum_probs=22.2
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhc
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSV 199 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~ 199 (984)
....+|+|.|..|+||||+|+.....+
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll 86 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALL 86 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 456799999999999999998754444
No 349
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=93.76 E-value=0.74 Score=43.66 Aligned_cols=108 Identities=15% Similarity=0.119 Sum_probs=69.4
Q ss_pred hHHHHHHHHhhhhhhhhhchhhhHHHHhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCchhHHHHHH
Q 001999 2 AEAAIVQAVGSVLTPAVEGGSGIFHYLKLNCGYVKHLKRNFVELEKELTFLCDCETEVNEELNSNKTKKKMTRGCKLWLD 81 (984)
Q Consensus 2 ae~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~a~~~~~~~~~v~~wl~ 81 (984)
||.++.|++|++++.++..+ .+...-...++.-.+.|...++.|.-++.+++..-.+ .+..-+.-++
T Consensus 3 ~eL~~gaalG~~~~eLlk~v-------~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~e------ld~~~~ee~e 69 (147)
T PF05659_consen 3 AELVGGAALGAVFGELLKAV-------IDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVE------LDRPRQEEIE 69 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhh------cCCchhHHHH
Confidence 56666556666666665433 3333344566777888999999999999888754222 2222257789
Q ss_pred HHHHHHHHHHHHHHhhhhhCCccCCccCcccccchhHHHHHHHHHH
Q 001999 82 SVKEVRDEFEILRSQYQQTGGCLCGKRPIHSQLKLGKQIVEMVVKI 127 (984)
Q Consensus 82 ~l~~~~~d~ed~ld~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 127 (984)
++.+...+++++++.|..-. ..+++..++.+++|++.-+++
T Consensus 70 ~L~~~L~~g~~LV~k~sk~~-----r~n~~kk~~y~~Ki~~le~~l 110 (147)
T PF05659_consen 70 RLKELLEKGKELVEKCSKVR-----RWNLYKKPRYARKIEELEESL 110 (147)
T ss_pred HHHHHHHHHHHHHHHhcccc-----HHHHHhhHhHHHHHHHHHHHH
Confidence 99999999999999985421 123334555666666544444
No 350
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=93.70 E-value=0.053 Score=44.18 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=19.1
Q ss_pred EEEEEcCCCChHHHHHHHhhhh
Q 001999 177 KICICGPLGVGKTTIMENSHDS 198 (984)
Q Consensus 177 vi~I~G~gGiGKTtLa~~~~~~ 198 (984)
+|+|.|..|+||||+|+...+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999995555
No 351
>PRK12678 transcription termination factor Rho; Provisional
Probab=93.70 E-value=0.16 Score=58.09 Aligned_cols=98 Identities=21% Similarity=0.262 Sum_probs=53.9
Q ss_pred HHHHhcc-CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEE-EEEeCCCC-CHHHHHHHHHHHhcc-Cccccch--
Q 001999 166 LEKHLSS-GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIF-WVNVNTDG-NISDIQEIILERLKV-NAKELDN-- 239 (984)
Q Consensus 166 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~-wv~vs~~~-~~~~i~~~i~~~l~~-~~~~~~~-- 239 (984)
+++++.. ..-.-..|+|++|+|||||++.....+.. .+-++.+ .+-|.+.. .+.++.+.+-.++-. ..+....
T Consensus 406 vIDll~PIGkGQR~LIvgpp~aGKTtLL~~IAn~i~~-n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~ 484 (672)
T PRK12678 406 VIDLIMPIGKGQRGLIVSPPKAGKTTILQNIANAITT-NNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDH 484 (672)
T ss_pred eeeeecccccCCEeEEeCCCCCCHHHHHHHHHHHHhh-cCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHH
Confidence 4444443 45667889999999999999995554431 2334443 44454433 233333222111111 1111111
Q ss_pred ---HHHHHHHHHHH--cCCcEEEEEECCCC
Q 001999 240 ---AQRADNISKEL--KDKRYVLFLDGVSS 264 (984)
Q Consensus 240 ---~~~~~~l~~~L--~~kr~LlVlDdv~~ 264 (984)
..+.-.+.+++ .|+.+||++|++-.
T Consensus 485 ~~~a~~ai~~Ae~fre~G~dVlillDSlTR 514 (672)
T PRK12678 485 TTVAELAIERAKRLVELGKDVVVLLDSITR 514 (672)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEeCchH
Confidence 33444455555 68999999999854
No 352
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=93.70 E-value=0.32 Score=49.76 Aligned_cols=28 Identities=29% Similarity=0.335 Sum_probs=23.1
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
.+...|.++||+|.||||..|.....+.
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~ 44 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLH 44 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHh
Confidence 3467889999999999999999655555
No 353
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=93.66 E-value=1.4 Score=51.97 Aligned_cols=128 Identities=17% Similarity=0.118 Sum_probs=73.4
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHHHHHhccCccccchHHHHHHHHHHHcCC
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEIILERLKVNAKELDNAQRADNISKELKDK 253 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~k 253 (984)
..+.+-++|++|.|||.||+++....+ .+|-. +... .+. . ..-..++..........-+..
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~--~~fi~-----v~~~----~l~----s----k~vGesek~ir~~F~~A~~~~ 335 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESR--SRFIS-----VKGS----ELL----S----KWVGESEKNIRELFEKARKLA 335 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCC--CeEEE-----eeCH----HHh----c----cccchHHHHHHHHHHHHHcCC
Confidence 456899999999999999999877655 44522 2211 110 0 011111122333333444578
Q ss_pred cEEEEEECCCCccch-------------hhhccc----cCCCCcEEEEEcCCccccc-------cCCceEEccCCChHHH
Q 001999 254 RYVLFLDGVSSEINF-------------KEIGIH----DDHGRGKVVFACRSREFCW-------QADDVIHVERLSPREA 309 (984)
Q Consensus 254 r~LlVlDdv~~~~~~-------------~~~~~~----~~~~gs~ilvTTR~~~v~~-------~~~~~~~l~~L~~~~~ 309 (984)
...|++|.+.....+ ..+... ....+..||-||-...... .-...+.+.+-+.++.
T Consensus 336 p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r 415 (494)
T COG0464 336 PSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEER 415 (494)
T ss_pred CcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHHH
Confidence 999999999653111 111111 2222333444444433322 3356888899999999
Q ss_pred HHHHHHHhCCC
Q 001999 310 KKLFWEVVGVN 320 (984)
Q Consensus 310 ~~Lf~~~~~~~ 320 (984)
.+.|+.+....
T Consensus 416 ~~i~~~~~~~~ 426 (494)
T COG0464 416 LEIFKIHLRDK 426 (494)
T ss_pred HHHHHHHhccc
Confidence 99999987743
No 354
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=93.65 E-value=0.055 Score=55.40 Aligned_cols=28 Identities=32% Similarity=0.322 Sum_probs=23.3
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
+...+|+|+|++|+||||||+.......
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4567999999999999999999655543
No 355
>PRK05480 uridine/cytidine kinase; Provisional
Probab=93.65 E-value=0.057 Score=55.41 Aligned_cols=27 Identities=30% Similarity=0.309 Sum_probs=23.3
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhc
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSV 199 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~ 199 (984)
.+..+|+|.|.+|+||||||+.....+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456799999999999999999966655
No 356
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.63 E-value=0.64 Score=48.04 Aligned_cols=24 Identities=29% Similarity=0.338 Sum_probs=20.8
Q ss_pred CCccEEEEEcCCCChHHHHHHHhh
Q 001999 173 GGLKKICICGPLGVGKTTIMENSH 196 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~ 196 (984)
..-.+++|+|..|.|||||.+...
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~ 47 (220)
T cd03265 24 RRGEIFGLLGPNGAGKTTTIKMLT 47 (220)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHh
Confidence 356799999999999999999933
No 357
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=93.62 E-value=0.14 Score=54.00 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHhhhhcc
Q 001999 177 KICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 177 vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
.|.++|++|+||||+|+...+...
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~ 24 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLS 24 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999666553
No 358
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=93.60 E-value=0.11 Score=49.13 Aligned_cols=38 Identities=16% Similarity=0.318 Sum_probs=26.3
Q ss_pred cEEEEEcCCCChHHHHHHHh-hhhcccCCCCCeEEEEEeCC
Q 001999 176 KKICICGPLGVGKTTIMENS-HDSVGESGRFDIIFWVNVNT 215 (984)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~~-~~~~~~~~~F~~~~wv~vs~ 215 (984)
++|.|+|..|+|||||++.. ..-.+ +.+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~--~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKR--RGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHH--TT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhH--cCCceEEEEEccC
Confidence 58999999999999999994 44444 5666666666555
No 359
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=93.56 E-value=0.13 Score=50.80 Aligned_cols=23 Identities=35% Similarity=0.634 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHhhhhc
Q 001999 177 KICICGPLGVGKTTIMENSHDSV 199 (984)
Q Consensus 177 vi~I~G~gGiGKTtLa~~~~~~~ 199 (984)
.|.|.|.+|.||||+|+...++.
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999966554
No 360
>PTZ00035 Rad51 protein; Provisional
Probab=93.54 E-value=0.62 Score=51.31 Aligned_cols=59 Identities=15% Similarity=0.139 Sum_probs=39.5
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhccc---C-CCCCeEEEEEeCCCCCHHHHHHHHHHHhcc
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSVGE---S-GRFDIIFWVNVNTDGNISDIQEIILERLKV 232 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~---~-~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~ 232 (984)
....++.|+|..|+|||||+....-.+.. . ..=..++|++-...|+..++ .++++.++.
T Consensus 116 ~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~ 178 (337)
T PTZ00035 116 ETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGL 178 (337)
T ss_pred CCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCC
Confidence 45789999999999999999883322210 0 11235779998887887774 444555543
No 361
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=93.54 E-value=0.14 Score=62.42 Aligned_cols=47 Identities=21% Similarity=0.357 Sum_probs=37.4
Q ss_pred CCCCchHHHHHHHHHHhcc---------CCccEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 154 SKFPSHKEYVETLEKHLSS---------GGLKKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 154 ~~~vgr~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
..++|.++.++.|.+.+.. .....+.++|+.|+|||++|+...+...
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~ 513 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4578999999998888762 1245788999999999999999766654
No 362
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=93.53 E-value=1.7 Score=49.88 Aligned_cols=167 Identities=15% Similarity=0.258 Sum_probs=94.6
Q ss_pred CCCchHHHHHHHHHHhcc-------------CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHH
Q 001999 155 KFPSHKEYVETLEKHLSS-------------GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISD 221 (984)
Q Consensus 155 ~~vgr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~ 221 (984)
++-|.++.+.++.-.+.. ....-|-++|++|+|||-||+++....+ .+| ++|-.. +
T Consensus 512 dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag--~NF-----isVKGP----E 580 (802)
T KOG0733|consen 512 DIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAG--ANF-----ISVKGP----E 580 (802)
T ss_pred hcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhcc--Cce-----EeecCH----H
Confidence 344556666666555432 3356788999999999999999888777 555 333221 2
Q ss_pred HHHHHHHHhccCccccchHHHHHHHHHHHcCCcEEEEEECCCCc-------cch------hhhccc----cCCCCcEEEE
Q 001999 222 IQEIILERLKVNAKELDNAQRADNISKELKDKRYVLFLDGVSSE-------INF------KEIGIH----DDHGRGKVVF 284 (984)
Q Consensus 222 i~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~-------~~~------~~~~~~----~~~~gs~ilv 284 (984)
++..- +| .++.......++.=..-.++|++|.+... ..| ..+... ....|--||-
T Consensus 581 LlNkY---VG-----ESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~via 652 (802)
T KOG0733|consen 581 LLNKY---VG-----ESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIA 652 (802)
T ss_pred HHHHH---hh-----hHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEe
Confidence 22111 11 11122222333333467999999998642 111 111111 2345666776
Q ss_pred EcCCccccc-------cCCceEEccCCChHHHHHHHHHHhCC--C-CCCCcchHHHHHHHHHHcCCCc
Q 001999 285 ACRSREFCW-------QADDVIHVERLSPREAKKLFWEVVGV--N-LKKNPDIEQEADSIVEECGGMP 342 (984)
Q Consensus 285 TTR~~~v~~-------~~~~~~~l~~L~~~~~~~Lf~~~~~~--~-~~~~~~l~~~~~~I~~~c~GlP 342 (984)
.|-..++-. .-++..-++.=+.+|-.++++..... . ...+-+++++|.. .+|.|.-
T Consensus 653 ATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 653 ATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred ecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhc--ccccCCc
Confidence 666665533 34556667777777888888887762 2 2344456666553 2455543
No 363
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=93.53 E-value=0.046 Score=66.85 Aligned_cols=111 Identities=14% Similarity=0.138 Sum_probs=60.8
Q ss_pred CCcEEEEEECCCCccchh---hhc---cc-cCCCCcEEEEEcCCccccc---c--CCceEEccCCChHHHHHHHHHHhCC
Q 001999 252 DKRYVLFLDGVSSEINFK---EIG---IH-DDHGRGKVVFACRSREFCW---Q--ADDVIHVERLSPREAKKLFWEVVGV 319 (984)
Q Consensus 252 ~kr~LlVlDdv~~~~~~~---~~~---~~-~~~~gs~ilvTTR~~~v~~---~--~~~~~~l~~L~~~~~~~Lf~~~~~~ 319 (984)
+++-|+++|..-...+.. .+. +. -...|+.+|+||-...+.. . ......+. ++. +... |....
T Consensus 401 ~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~~~~~~~~~v~~~~~~-~d~-~~l~-p~Ykl-- 475 (771)
T TIGR01069 401 TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELKALMYNNEGVENASVL-FDE-ETLS-PTYKL-- 475 (771)
T ss_pred CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHHhcCCCCeEEeEEE-EcC-CCCc-eEEEE--
Confidence 478999999987653322 121 11 2246889999999877643 1 11111111 111 1000 00000
Q ss_pred CCCCCcchHHHHHHHHHHcCCCchHHHHHHHHhhcCccHHHHHHHHHHhhcC
Q 001999 320 NLKKNPDIEQEADSIVEECGGMPYMLKLIGKELVNQSEVAIWRATVDDLRST 371 (984)
Q Consensus 320 ~~~~~~~l~~~~~~I~~~c~GlPlai~~~~~~l~~~~~~~~w~~~l~~l~~~ 371 (984)
....+. ..-|-+|++++ |+|-.+.--|..+... ...+.+.+++++...
T Consensus 476 -~~G~~g-~S~a~~iA~~~-Glp~~ii~~A~~~~~~-~~~~~~~li~~L~~~ 523 (771)
T TIGR01069 476 -LKGIPG-ESYAFEIAQRY-GIPHFIIEQAKTFYGE-FKEEINVLIEKLSAL 523 (771)
T ss_pred -CCCCCC-CcHHHHHHHHh-CcCHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 011111 23678888876 8998888888877665 455677777766543
No 364
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.52 E-value=0.098 Score=53.99 Aligned_cols=168 Identities=17% Similarity=0.162 Sum_probs=78.0
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhh--cccCCCCCeEEEEEeCCCCCHHHHHHHHHHHhccCcc---ccch-HHHHHHHH
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDS--VGESGRFDIIFWVNVNTDGNISDIQEIILERLKVNAK---ELDN-AQRADNIS 247 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~--~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~---~~~~-~~~~~~l~ 247 (984)
+.+++.|.|+.|.||||+.+....- ......| |.... ....+...|+..++.... ..+. ......+.
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~~~~~la~~g~~-----vpa~~--~~~~~~~~il~~~~l~d~~~~~lS~~~~e~~~~a 101 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIGVIVLMAQIGCF-----VPCDS--ADIPIVDCILARVGASDSQLKGVSTFMAEMLETA 101 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHHHHhCCC-----cCccc--EEEeccceeEeeeccccchhcCcChHHHHHHHHH
Confidence 5679999999999999998872211 1100212 11100 000011222222222111 1111 22233333
Q ss_pred HHH--cCCcEEEEEECC---CCccchhhh--cc-c--cCCCCcEEEEEcCCccccc--c---CCceEEccCCChH--HHH
Q 001999 248 KEL--KDKRYVLFLDGV---SSEINFKEI--GI-H--DDHGRGKVVFACRSREFCW--Q---ADDVIHVERLSPR--EAK 310 (984)
Q Consensus 248 ~~L--~~kr~LlVlDdv---~~~~~~~~~--~~-~--~~~~gs~ilvTTR~~~v~~--~---~~~~~~l~~L~~~--~~~ 310 (984)
..+ -.++-|++||.. -+..|-... .. . ....|+.+|+||-...+.. . .....++.....+ +..
T Consensus 102 ~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~~~~~~vlisTH~~el~~~~~~~~~i~~g~~~~~~~~~~~~~ 181 (222)
T cd03285 102 AILKSATENSLIIIDELGRGTSTYDGFGLAWAIAEYIATQIKCFCLFATHFHELTALADEVPNVKNLHVTALTDDASRTL 181 (222)
T ss_pred HHHHhCCCCeEEEEecCcCCCChHHHHHHHHHHHHHHHhcCCCeEEEEechHHHHHHhhcCCCeEEEEEEEEEeCCCCcE
Confidence 444 367889999999 333322111 00 1 1235788999998765544 1 1112222211111 111
Q ss_pred HHHHHHhCCCCCCCcchHHHHHHHHHHcCCCchHHHHHHHHhhc
Q 001999 311 KLFWEVVGVNLKKNPDIEQEADSIVEECGGMPYMLKLIGKELVN 354 (984)
Q Consensus 311 ~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~~~~~l~~ 354 (984)
. |......+ ... ...|-++++++ |+|-.+..-|..+..
T Consensus 182 ~-~~Y~l~~G---~~~-~s~a~~~a~~~-g~p~~vi~~A~~~~~ 219 (222)
T cd03285 182 T-MLYKVEKG---ACD-QSFGIHVAELA-NFPKEVIEMAKQKAL 219 (222)
T ss_pred e-EEEEEeeC---CCC-CcHHHHHHHHh-CcCHHHHHHHHHHHH
Confidence 0 10011111 111 34577788776 899888877776654
No 365
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=93.48 E-value=0.55 Score=48.46 Aligned_cols=24 Identities=29% Similarity=0.297 Sum_probs=20.7
Q ss_pred CCccEEEEEcCCCChHHHHHHHhh
Q 001999 173 GGLKKICICGPLGVGKTTIMENSH 196 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~ 196 (984)
..-.+++|+|..|.|||||++...
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~ 52 (218)
T cd03266 29 KPGEVTGLLGPNGAGKTTTLRMLA 52 (218)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHh
Confidence 456789999999999999999933
No 366
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=93.48 E-value=0.55 Score=49.78 Aligned_cols=124 Identities=15% Similarity=0.178 Sum_probs=64.6
Q ss_pred HHHHHHHhcc-CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEE---eCCCCCHHHHHHHHHHHhccC-----
Q 001999 163 VETLEKHLSS-GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVN---VNTDGNISDIQEIILERLKVN----- 233 (984)
Q Consensus 163 ~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~---vs~~~~~~~i~~~i~~~l~~~----- 233 (984)
.+.++..+.+ ....-++|+|+.|.|||||.+.....+. .....+++. |....+..++...+ ..+...
T Consensus 98 ~~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~---~~~G~i~~~g~~v~~~d~~~ei~~~~-~~~~q~~~~~r 173 (270)
T TIGR02858 98 ADKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARILS---TGISQLGLRGKKVGIVDERSEIAGCV-NGVPQHDVGIR 173 (270)
T ss_pred HHHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCccC---CCCceEEECCEEeecchhHHHHHHHh-ccccccccccc
Confidence 4444444443 4457899999999999999999666654 222233331 11111122332211 111000
Q ss_pred ccccchHHHHHHHHHHHc-CCcEEEEEECCCCccchhhhccccCCCCcEEEEEcCCccc
Q 001999 234 AKELDNAQRADNISKELK-DKRYVLFLDGVSSEINFKEIGIHDDHGRGKVVFACRSREF 291 (984)
Q Consensus 234 ~~~~~~~~~~~~l~~~L~-~kr~LlVlDdv~~~~~~~~~~~~~~~~gs~ilvTTR~~~v 291 (984)
.+-.+.......+...+. ..+-++++|.+-..+.+..+.-. ...|..||+||-...+
T Consensus 174 ~~v~~~~~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~-~~~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 174 TDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEA-LHAGVSIIATAHGRDV 231 (270)
T ss_pred ccccccchHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHH-HhCCCEEEEEechhHH
Confidence 011111111223333333 57889999999876655544111 1357789999875443
No 367
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.48 E-value=0.23 Score=55.39 Aligned_cols=22 Identities=36% Similarity=0.524 Sum_probs=19.5
Q ss_pred ccEEEEEcCCCChHHHHHHHhh
Q 001999 175 LKKICICGPLGVGKTTIMENSH 196 (984)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~~~ 196 (984)
..++.++|++|+||||++.+..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA 244 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLA 244 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999944
No 368
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.44 E-value=0.13 Score=53.93 Aligned_cols=82 Identities=18% Similarity=0.246 Sum_probs=46.7
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhhcc--cCCCCCeEEEEEeCCCCCHHHHHHHHHHHhccCccccchHHHHHHHHHHHc
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDSVG--ESGRFDIIFWVNVNTDGNISDIQEIILERLKVNAKELDNAQRADNISKELK 251 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~~~--~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~L~ 251 (984)
-.++|-++|++|.|||+|.+..+++.. ....+....-+.++. ..+...-+.+-+ ..-..+.++|++.++
T Consensus 176 ~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins----hsLFSKWFsESg-----KlV~kmF~kI~ELv~ 246 (423)
T KOG0744|consen 176 WNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS----HSLFSKWFSESG-----KLVAKMFQKIQELVE 246 (423)
T ss_pred eeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh----hHHHHHHHhhhh-----hHHHHHHHHHHHHHh
Confidence 358999999999999999999777653 234443333333221 222222222111 001455666777776
Q ss_pred CCc--EEEEEECCCC
Q 001999 252 DKR--YVLFLDGVSS 264 (984)
Q Consensus 252 ~kr--~LlVlDdv~~ 264 (984)
++. +.+.+|.|..
T Consensus 247 d~~~lVfvLIDEVES 261 (423)
T KOG0744|consen 247 DRGNLVFVLIDEVES 261 (423)
T ss_pred CCCcEEEEEeHHHHH
Confidence 654 4556777754
No 369
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=93.44 E-value=0.49 Score=49.08 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=20.9
Q ss_pred CCccEEEEEcCCCChHHHHHHHhh
Q 001999 173 GGLKKICICGPLGVGKTTIMENSH 196 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~ 196 (984)
..-.+++|+|..|.|||||++...
T Consensus 46 ~~Ge~~~i~G~nGsGKSTLl~~l~ 69 (224)
T cd03220 46 PRGERIGLIGRNGAGKSTLLRLLA 69 (224)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 456799999999999999999843
No 370
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.43 E-value=0.089 Score=56.01 Aligned_cols=87 Identities=25% Similarity=0.464 Sum_probs=46.5
Q ss_pred HHHHHHhccCCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHHHHH-hccCccccchHHH
Q 001999 164 ETLEKHLSSGGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEIILER-LKVNAKELDNAQR 242 (984)
Q Consensus 164 ~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~-l~~~~~~~~~~~~ 242 (984)
..+++.+...+ +-+.++|+.|+|||++++..-..... ..| ...-++.|...+...++ .+++. +.......
T Consensus 23 ~~ll~~l~~~~-~pvLl~G~~GtGKT~li~~~l~~l~~-~~~-~~~~~~~s~~Tts~~~q-~~ie~~l~k~~~~~----- 93 (272)
T PF12775_consen 23 SYLLDLLLSNG-RPVLLVGPSGTGKTSLIQNFLSSLDS-DKY-LVITINFSAQTTSNQLQ-KIIESKLEKRRGRV----- 93 (272)
T ss_dssp HHHHHHHHHCT-EEEEEESSTTSSHHHHHHHHHHCSTT-CCE-EEEEEES-TTHHHHHHH-HCCCTTECECTTEE-----
T ss_pred HHHHHHHHHcC-CcEEEECCCCCchhHHHHhhhccCCc-ccc-ceeEeeccCCCCHHHHH-HHHhhcEEcCCCCC-----
Confidence 44556665554 45589999999999999984333321 222 23445555544444333 23222 11110000
Q ss_pred HHHHHHHHcCCcEEEEEECCC
Q 001999 243 ADNISKELKDKRYVLFLDGVS 263 (984)
Q Consensus 243 ~~~l~~~L~~kr~LlVlDdv~ 263 (984)
..--.+|+.++++||+-
T Consensus 94 ----~gP~~~k~lv~fiDDlN 110 (272)
T PF12775_consen 94 ----YGPPGGKKLVLFIDDLN 110 (272)
T ss_dssp ----EEEESSSEEEEEEETTT
T ss_pred ----CCCCCCcEEEEEecccC
Confidence 00013789999999984
No 371
>PRK00279 adk adenylate kinase; Reviewed
Probab=93.42 E-value=0.28 Score=50.45 Aligned_cols=24 Identities=29% Similarity=0.511 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHhhhhcc
Q 001999 177 KICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 177 vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
.|.|+|++|+||||+|+...++..
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~ 25 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYG 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999998766543
No 372
>PRK03846 adenylylsulfate kinase; Provisional
Probab=93.42 E-value=0.21 Score=50.72 Aligned_cols=27 Identities=19% Similarity=0.234 Sum_probs=23.3
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhc
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSV 199 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~ 199 (984)
.+..+|+|+|++|+||||+|+......
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l 48 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEAL 48 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 466899999999999999999966654
No 373
>PRK13975 thymidylate kinase; Provisional
Probab=93.39 E-value=0.23 Score=50.34 Aligned_cols=25 Identities=32% Similarity=0.268 Sum_probs=22.8
Q ss_pred cEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 176 KKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
.+|+|.|+.|+||||+|+...++.+
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~ 27 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLN 27 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999888776
No 374
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=93.37 E-value=0.29 Score=50.41 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHhhhhcc
Q 001999 177 KICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 177 vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
+|+|.|..|+||||+|+.....+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999665553
No 375
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.34 E-value=0.36 Score=46.84 Aligned_cols=113 Identities=13% Similarity=0.183 Sum_probs=61.6
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCC--CHHHHHHHHHHHhccCccccch-HHHHHHHHHH
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDG--NISDIQEIILERLKVNAKELDN-AQRADNISKE 249 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~--~~~~i~~~i~~~l~~~~~~~~~-~~~~~~l~~~ 249 (984)
.+-.+++|+|..|.|||||++....... .....+++.-.... .... ....+..-.+ .+. +...-.+...
T Consensus 23 ~~g~~~~i~G~nGsGKStll~~l~g~~~---~~~G~i~~~~~~~~~~~~~~----~~~~i~~~~q-lS~G~~~r~~l~~~ 94 (157)
T cd00267 23 KAGEIVALVGPNGSGKSTLLRAIAGLLK---PTSGEILIDGKDIAKLPLEE----LRRRIGYVPQ-LSGGQRQRVALARA 94 (157)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCEEcccCCHHH----HHhceEEEee-CCHHHHHHHHHHHH
Confidence 3457999999999999999999554442 23444544321111 1111 1111211111 222 4444456677
Q ss_pred HcCCcEEEEEECCCCccchh---hh--ccc-cCCCCcEEEEEcCCccccc
Q 001999 250 LKDKRYVLFLDGVSSEINFK---EI--GIH-DDHGRGKVVFACRSREFCW 293 (984)
Q Consensus 250 L~~kr~LlVlDdv~~~~~~~---~~--~~~-~~~~gs~ilvTTR~~~v~~ 293 (984)
+....-++++|+.-...|-. .+ .+. ....+..++++|-+.....
T Consensus 95 l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 144 (157)
T cd00267 95 LLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAE 144 (157)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 77788899999986543311 11 111 1122567888887665544
No 376
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=93.30 E-value=0.2 Score=55.69 Aligned_cols=75 Identities=20% Similarity=0.266 Sum_probs=50.3
Q ss_pred CCCCchHHHHHHHHHHhcc--------------CCccEEEEEcCCCChHHHHHHHhhhhcccCCCC---CeEEEEEeC-C
Q 001999 154 SKFPSHKEYVETLEKHLSS--------------GGLKKICICGPLGVGKTTIMENSHDSVGESGRF---DIIFWVNVN-T 215 (984)
Q Consensus 154 ~~~vgr~~~~~~l~~~L~~--------------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F---~~~~wv~vs-~ 215 (984)
..++|.++.++.+..++.. ....-|.++|+.|+|||++|+...+.+. ..| +..-|...+ .
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~--~~fi~vD~t~f~e~Gyv 92 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAN--APFIKVEATKFTEVGYV 92 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhC--ChheeecchhhccCCcc
Confidence 4489999999888877742 0136789999999999999999766665 444 333233221 1
Q ss_pred CCCHHHHHHHHHHHh
Q 001999 216 DGNISDIQEIILERL 230 (984)
Q Consensus 216 ~~~~~~i~~~i~~~l 230 (984)
..+...+.+.+.+..
T Consensus 93 G~d~e~~ir~L~~~A 107 (443)
T PRK05201 93 GRDVESIIRDLVEIA 107 (443)
T ss_pred cCCHHHHHHHHHHHH
Confidence 236667777766654
No 377
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.25 E-value=0.17 Score=58.42 Aligned_cols=73 Identities=22% Similarity=0.279 Sum_probs=46.5
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCC--CCHHHHHHHHHHHhccCccccchHHHHHHHHHHHc
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTD--GNISDIQEIILERLKVNAKELDNAQRADNISKELK 251 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~--~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~L~ 251 (984)
...-|-|.|+.|+|||+||+...+.+. ..+.-.+.+|+.+.- .....+++. +.....+.+.
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~----------------l~~vfse~~~ 492 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKF----------------LNNVFSEALW 492 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHH----------------HHHHHHHHHh
Confidence 345688999999999999999444443 144445666666542 122222222 2223345566
Q ss_pred CCcEEEEEECCC
Q 001999 252 DKRYVLFLDGVS 263 (984)
Q Consensus 252 ~kr~LlVlDdv~ 263 (984)
-.+-+|||||+.
T Consensus 493 ~~PSiIvLDdld 504 (952)
T KOG0735|consen 493 YAPSIIVLDDLD 504 (952)
T ss_pred hCCcEEEEcchh
Confidence 789999999985
No 378
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=93.22 E-value=0.14 Score=54.38 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=18.3
Q ss_pred cEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 176 KKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
+.|.|.|.+|+||||+|+...+...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~ 26 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLE 26 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHH
Confidence 4688999999999999999555544
No 379
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.20 E-value=0.71 Score=51.58 Aligned_cols=87 Identities=16% Similarity=0.259 Sum_probs=48.1
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhhcccC-CCCC-eEEEEEeCCCCCHH--HHHHHHHHHhccCccccch-HHHHHHHHH
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDSVGES-GRFD-IIFWVNVNTDGNIS--DIQEIILERLKVNAKELDN-AQRADNISK 248 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~-~~F~-~~~wv~vs~~~~~~--~i~~~i~~~l~~~~~~~~~-~~~~~~l~~ 248 (984)
..++|.++|+.|+||||.+.......... .+-. .+..+++ +++... .-++..++.++.+...... ++....+.+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~-Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~ 251 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITI-DNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ 251 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEec-cCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHH
Confidence 35799999999999999998844443210 1112 3344443 344332 3355555556554332222 444444443
Q ss_pred HHcCCcEEEEEECCC
Q 001999 249 ELKDKRYVLFLDGVS 263 (984)
Q Consensus 249 ~L~~kr~LlVlDdv~ 263 (984)
. .+.=+|++|..-
T Consensus 252 ~--~~~DlVLIDTaG 264 (388)
T PRK12723 252 S--KDFDLVLVDTIG 264 (388)
T ss_pred h--CCCCEEEEcCCC
Confidence 2 345678888874
No 380
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=93.15 E-value=0.54 Score=51.32 Aligned_cols=59 Identities=15% Similarity=0.137 Sum_probs=40.2
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhcc----cCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcc
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSVG----ESGRFDIIFWVNVNTDGNISDIQEIILERLKV 232 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~----~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~ 232 (984)
....++.|+|.+|+|||||+......+. ....-..++|++-...++..++ .++++.++.
T Consensus 94 ~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~ 156 (316)
T TIGR02239 94 ETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGL 156 (316)
T ss_pred CCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCC
Confidence 4578999999999999999988433221 0012236799998888888764 445555543
No 381
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=93.14 E-value=0.23 Score=48.55 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=18.9
Q ss_pred EEEEcCCCChHHHHHHHhhhhc
Q 001999 178 ICICGPLGVGKTTIMENSHDSV 199 (984)
Q Consensus 178 i~I~G~gGiGKTtLa~~~~~~~ 199 (984)
|.|+|+.|+||||+|+......
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999966655
No 382
>PRK14974 cell division protein FtsY; Provisional
Probab=93.13 E-value=0.67 Score=50.77 Aligned_cols=57 Identities=23% Similarity=0.173 Sum_probs=33.8
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCH--HHHHHHHHHHhccC
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNI--SDIQEIILERLKVN 233 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~--~~i~~~i~~~l~~~ 233 (984)
+..+|.++|+.|+||||++......++. ..+ .++.+. .+.+.. .+-++...+.++..
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~-~g~-~V~li~-~Dt~R~~a~eqL~~~a~~lgv~ 197 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKK-NGF-SVVIAA-GDTFRAGAIEQLEEHAERLGVK 197 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH-cCC-eEEEec-CCcCcHHHHHHHHHHHHHcCCc
Confidence 4689999999999999988885444431 233 233333 333322 23345556666543
No 383
>PRK00625 shikimate kinase; Provisional
Probab=93.12 E-value=0.072 Score=52.43 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=20.9
Q ss_pred EEEEEcCCCChHHHHHHHhhhhcc
Q 001999 177 KICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 177 vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
.|.++||.|+||||+++...++..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999777654
No 384
>PRK08149 ATP synthase SpaL; Validated
Probab=93.11 E-value=0.41 Score=53.89 Aligned_cols=88 Identities=19% Similarity=0.278 Sum_probs=52.7
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCC-CCHHHHHHHHHHHhccC--------ccccch----
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTD-GNISDIQEIILERLKVN--------AKELDN---- 239 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~-~~~~~i~~~i~~~l~~~--------~~~~~~---- 239 (984)
.+...++|+|..|+|||||++....... -+.++...+... -++.++..+........ .+....
T Consensus 149 ~~Gq~i~I~G~sG~GKTTLl~~i~~~~~----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~ 224 (428)
T PRK08149 149 GVGQRMGIFASAGCGKTSLMNMLIEHSE----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCN 224 (428)
T ss_pred ecCCEEEEECCCCCChhHHHHHHhcCCC----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHh
Confidence 4667899999999999999988554322 234444445443 35566666666542211 111111
Q ss_pred -HHHHHHHHHHH--cCCcEEEEEECCCC
Q 001999 240 -AQRADNISKEL--KDKRYVLFLDGVSS 264 (984)
Q Consensus 240 -~~~~~~l~~~L--~~kr~LlVlDdv~~ 264 (984)
......+.+++ +||++||++||+-.
T Consensus 225 a~~~a~tiAE~fr~~G~~Vll~~DslTr 252 (428)
T PRK08149 225 AALVATTVAEYFRDQGKRVVLFIDSMTR 252 (428)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEccchHH
Confidence 22233344444 58999999999954
No 385
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=93.11 E-value=0.35 Score=50.28 Aligned_cols=130 Identities=20% Similarity=0.217 Sum_probs=70.9
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhcccCC-----------C-----C-CeEEEEEe----------------CCC---
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSVGESG-----------R-----F-DIIFWVNV----------------NTD--- 216 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~-----------~-----F-~~~~wv~v----------------s~~--- 216 (984)
+...+++|+|+.|+|||||.+....-.+-.. . + ....+|.- ++.
T Consensus 26 ~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~ 105 (258)
T COG1120 26 PKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHL 105 (258)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCccc
Confidence 4568999999999999999998444322000 0 0 01222211 110
Q ss_pred --C---C--HHHHHHHHHHHhccCc------cccch-HHHHHHHHHHHcCCcEEEEEECCCCccch-------hhhcccc
Q 001999 217 --G---N--ISDIQEIILERLKVNA------KELDN-AQRADNISKELKDKRYVLFLDGVSSEINF-------KEIGIHD 275 (984)
Q Consensus 217 --~---~--~~~i~~~i~~~l~~~~------~~~~~-~~~~~~l~~~L~~kr~LlVlDdv~~~~~~-------~~~~~~~ 275 (984)
+ + -.++..+.++.++... ...+. +.....|...|..+.=+|+||.=-+.-|. +.+.--.
T Consensus 106 ~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~ 185 (258)
T COG1120 106 GLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLN 185 (258)
T ss_pred ccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHH
Confidence 0 1 1224444455554322 22222 33344567888888889999985443222 1111113
Q ss_pred CCCCcEEEEEcCCccccc-cCCceEEcc
Q 001999 276 DHGRGKVVFACRSREFCW-QADDVIHVE 302 (984)
Q Consensus 276 ~~~gs~ilvTTR~~~v~~-~~~~~~~l~ 302 (984)
...|..||+++-+-+.|. .+++.+-|+
T Consensus 186 ~~~~~tvv~vlHDlN~A~ryad~~i~lk 213 (258)
T COG1120 186 REKGLTVVMVLHDLNLAARYADHLILLK 213 (258)
T ss_pred HhcCCEEEEEecCHHHHHHhCCEEEEEE
Confidence 456788999998887766 444444443
No 386
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=93.10 E-value=0.33 Score=47.60 Aligned_cols=80 Identities=15% Similarity=0.191 Sum_probs=48.4
Q ss_pred EEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHHHHHhccCccccchHHHHHHHHHHHcC--Cc
Q 001999 177 KICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEIILERLKVNAKELDNAQRADNISKELKD--KR 254 (984)
Q Consensus 177 vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~--kr 254 (984)
++.|.|..|+|||++|.+..... ...++++.-++.+|. ++.+.|..........+...+....+.+.+.. +.
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~~-----~~~~~y~at~~~~d~-em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~~ 74 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAEL-----GGPVTYIATAEAFDD-EMAERIARHRKRRPAHWRTIETPRDLVSALKELDPG 74 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHhc-----CCCeEEEEccCcCCH-HHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCCC
Confidence 36789999999999999943331 135677777777765 35555554433333334333333444444422 23
Q ss_pred EEEEEECC
Q 001999 255 YVLFLDGV 262 (984)
Q Consensus 255 ~LlVlDdv 262 (984)
-.+++|.+
T Consensus 75 ~~VLIDcl 82 (169)
T cd00544 75 DVVLIDCL 82 (169)
T ss_pred CEEEEEcH
Confidence 47999997
No 387
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=93.09 E-value=0.77 Score=48.65 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=20.8
Q ss_pred CCccEEEEEcCCCChHHHHHHHhh
Q 001999 173 GGLKKICICGPLGVGKTTIMENSH 196 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~ 196 (984)
..-.+++|+|+.|.|||||++...
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~ 48 (255)
T PRK11248 25 ESGELLVVLGPSGCGKTTLLNLIA 48 (255)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHh
Confidence 456799999999999999999833
No 388
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=93.09 E-value=0.24 Score=55.96 Aligned_cols=47 Identities=19% Similarity=0.270 Sum_probs=35.3
Q ss_pred CCCCchHHHHHHHHHHhcc-------C---------CccEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 154 SKFPSHKEYVETLEKHLSS-------G---------GLKKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 154 ~~~vgr~~~~~~l~~~L~~-------~---------~~~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
..++|.+..++.+...+.. . .-.-+.++|++|+|||++|+.......
T Consensus 71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~ 133 (412)
T PRK05342 71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILD 133 (412)
T ss_pred hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhC
Confidence 3579999988887555421 0 235688999999999999999776655
No 389
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=93.06 E-value=0.47 Score=49.58 Aligned_cols=85 Identities=14% Similarity=0.199 Sum_probs=52.3
Q ss_pred CCccEEEEEcCCCChHHHHHHH-hhhhcccCCCCCeEEEEEeCCCCCHHHHHHHHHHHhccCccc---------------
Q 001999 173 GGLKKICICGPLGVGKTTIMEN-SHDSVGESGRFDIIFWVNVNTDGNISDIQEIILERLKVNAKE--------------- 236 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~-~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~--------------- 236 (984)
+...++.|+|.+|+|||++|.+ .++.++ . =..++|++..+. ...+.+++ ++++....+
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~~~--~-g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~ 96 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGALK--Q-GKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTE 96 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHHHh--C-CCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEecccc
Confidence 4578999999999999999999 455454 2 246788888653 44555543 223221110
Q ss_pred ------cchHHHHHHHHHHHcC-CcEEEEEECCC
Q 001999 237 ------LDNAQRADNISKELKD-KRYVLFLDGVS 263 (984)
Q Consensus 237 ------~~~~~~~~~l~~~L~~-kr~LlVlDdv~ 263 (984)
...+.+...+.+.++. +.-++|+|.+-
T Consensus 97 ~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 97 GFEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred ccccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0014455556565553 55578888864
No 390
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.05 E-value=0.65 Score=50.12 Aligned_cols=47 Identities=21% Similarity=0.326 Sum_probs=35.4
Q ss_pred CCCCchHHHHHHHHHHhcc------------CCccEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 154 SKFPSHKEYVETLEKHLSS------------GGLKKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 154 ~~~vgr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
+++.|.++.++-|.+.+.- ..-+-|..+|++|.|||-||++++....
T Consensus 212 ~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~ 270 (491)
T KOG0738|consen 212 DDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECG 270 (491)
T ss_pred HhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhc
Confidence 3456777776666665532 3457888999999999999999888876
No 391
>PRK03839 putative kinase; Provisional
Probab=93.05 E-value=0.074 Score=53.08 Aligned_cols=24 Identities=42% Similarity=0.602 Sum_probs=21.3
Q ss_pred EEEEEcCCCChHHHHHHHhhhhcc
Q 001999 177 KICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 177 vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
.|.|+|++|+||||+|+...++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999877764
No 392
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=93.05 E-value=0.16 Score=47.19 Aligned_cols=40 Identities=23% Similarity=0.370 Sum_probs=28.2
Q ss_pred HHHHHHHHHhcc--CCccEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 161 EYVETLEKHLSS--GGLKKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 161 ~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
++..++-+.|.. ....+|.+.|.-|.||||+++...+...
T Consensus 6 ~~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 6 KAMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 344444444443 3457999999999999999999655543
No 393
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=93.04 E-value=0.88 Score=47.10 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=20.3
Q ss_pred CCccEEEEEcCCCChHHHHHHHh
Q 001999 173 GGLKKICICGPLGVGKTTIMENS 195 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~ 195 (984)
..-.+++|+|..|.|||||.+..
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l 46 (223)
T TIGR03740 24 PKNSVYGLLGPNGAGKSTLLKMI 46 (223)
T ss_pred cCCcEEEEECCCCCCHHHHHHHH
Confidence 35679999999999999999983
No 394
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=93.04 E-value=0.65 Score=48.60 Aligned_cols=49 Identities=10% Similarity=0.167 Sum_probs=35.5
Q ss_pred CCccEEEEEcCCCChHHHHHHH-hhhhcccCCCCCeEEEEEeCCCCCHHHHHHHH
Q 001999 173 GGLKKICICGPLGVGKTTIMEN-SHDSVGESGRFDIIFWVNVNTDGNISDIQEII 226 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~-~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i 226 (984)
+...++.|.|.+|+|||++|.+ .++.++ .-...+||+... +...+.+.+
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~~~~---~ge~~lyvs~ee--~~~~i~~~~ 68 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWNGLQ---MGEPGIYVALEE--HPVQVRRNM 68 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHHH---cCCcEEEEEeeC--CHHHHHHHH
Confidence 4678999999999999999998 455443 234678887655 555555553
No 395
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=93.03 E-value=1.4 Score=51.98 Aligned_cols=61 Identities=16% Similarity=0.254 Sum_probs=43.0
Q ss_pred CCCCCchHHHHHHHHHHhcc--CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCC
Q 001999 153 ASKFPSHKEYVETLEKHLSS--GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNT 215 (984)
Q Consensus 153 ~~~~vgr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~ 215 (984)
...++|+...+.++.+.+.. ..-.-|.|+|..|+|||++|+..+..-. ..-...+.|+++.
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~--r~~~p~v~v~c~~ 248 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASP--RADKPLVYLNCAA 248 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC--cCCCCeEEEEccc
Confidence 45689999998888877765 3456778999999999999999555433 2222334455444
No 396
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=93.02 E-value=0.62 Score=50.59 Aligned_cols=88 Identities=19% Similarity=0.258 Sum_probs=51.9
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCC-CCCHHHHHHHHHHHhccC--------ccccch----
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNT-DGNISDIQEIILERLKVN--------AKELDN---- 239 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~-~~~~~~i~~~i~~~l~~~--------~~~~~~---- 239 (984)
.....++|+|..|.|||||.+....... . +..+...+.. .-++.++.......-+.. .+....
T Consensus 67 ~~Gqri~I~G~sG~GKTtLl~~Ia~~~~--~--~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~ 142 (326)
T cd01136 67 GKGQRLGIFAGSGVGKSTLLGMIARGTT--A--DVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVK 142 (326)
T ss_pred cCCcEEEEECCCCCChHHHHHHHhCCCC--C--CEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHH
Confidence 4567899999999999999988555443 1 2344444443 345566665555442211 111111
Q ss_pred -HHHHHHHHHHH--cCCcEEEEEECCCC
Q 001999 240 -AQRADNISKEL--KDKRYVLFLDGVSS 264 (984)
Q Consensus 240 -~~~~~~l~~~L--~~kr~LlVlDdv~~ 264 (984)
....-.+.+++ +||.+|+++||+-.
T Consensus 143 ~~~~a~~~AEyfr~~g~~Vll~~Dsltr 170 (326)
T cd01136 143 AAYTATAIAEYFRDQGKDVLLLMDSLTR 170 (326)
T ss_pred HHHHHHHHHHHHHHcCCCeEEEeccchH
Confidence 22223344444 58999999999854
No 397
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=93.01 E-value=0.084 Score=53.05 Aligned_cols=26 Identities=35% Similarity=0.318 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhhc
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDSV 199 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 199 (984)
+.++|.|+|++|+||||+|+...+..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46899999999999999999865543
No 398
>PRK06762 hypothetical protein; Provisional
Probab=93.01 E-value=0.076 Score=52.16 Aligned_cols=25 Identities=36% Similarity=0.454 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCChHHHHHHHhhhhc
Q 001999 175 LKKICICGPLGVGKTTIMENSHDSV 199 (984)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~~~~~~ 199 (984)
..+|.|.|+.|+||||+|+...+..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999976665
No 399
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=93.01 E-value=0.39 Score=48.63 Aligned_cols=49 Identities=22% Similarity=0.057 Sum_probs=32.6
Q ss_pred ccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHH
Q 001999 175 LKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEI 225 (984)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~ 225 (984)
...|+|-|+-|+||||.++...+.++ .+.-.++|..-.....+.+..++
T Consensus 3 g~fI~iEGiDGaGKTT~~~~L~~~l~--~~g~~v~~trEP~~~~ige~iR~ 51 (208)
T COG0125 3 GMFIVIEGIDGAGKTTQAELLKERLE--ERGIKVVLTREPGGTPIGEKIRE 51 (208)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEEeCCCCChHHHHHHH
Confidence 46799999999999999999888776 43335555543333333333333
No 400
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=92.95 E-value=0.18 Score=50.76 Aligned_cols=49 Identities=35% Similarity=0.483 Sum_probs=31.0
Q ss_pred EEEEEcCCCChHHHHHHH-hhhhcccCCC-CCeEEEEEeCCCCCHHHHHHHHHHHhccCcc
Q 001999 177 KICICGPLGVGKTTIMEN-SHDSVGESGR-FDIIFWVNVNTDGNISDIQEIILERLKVNAK 235 (984)
Q Consensus 177 vi~I~G~gGiGKTtLa~~-~~~~~~~~~~-F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~ 235 (984)
.|+|.|.||+||||+|.. ...... ++ |+ +.=|....+++. .++++...+
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~--~~~~~-VLvVDaDpd~nL-------~~~LGve~~ 52 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLS--KGGYN-VLVVDADPDSNL-------PEALGVEEP 52 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHh--cCCce-EEEEeCCCCCCh-------HHhcCCCCC
Confidence 689999999999999998 444444 33 43 333444444443 345555543
No 401
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=92.92 E-value=0.079 Score=52.50 Aligned_cols=26 Identities=31% Similarity=0.510 Sum_probs=23.3
Q ss_pred ccEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 175 LKKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
..+|+|-||=|+||||||+...++.+
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 57999999999999999999887765
No 402
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=92.92 E-value=0.24 Score=54.99 Aligned_cols=108 Identities=13% Similarity=0.092 Sum_probs=59.9
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHHHHHhccCccccchHHHHHHHHHHHcCC
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEIILERLKVNAKELDNAQRADNISKELKDK 253 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~k 253 (984)
....|.|.|+.|.||||+.+.....+. .+...+++.- .++.. .........+...............++..|...
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i~--~~~~~~i~ti-Edp~E--~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~ 195 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYIN--KNAAGHIITI-EDPIE--YVHRNKRSLINQREVGLDTLSFANALRAALRED 195 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhhC--cCCCCEEEEE-cCChh--hhccCccceEEccccCCCCcCHHHHHHHhhccC
Confidence 457899999999999999998555554 4444455442 22211 110000000000000111133556677888889
Q ss_pred cEEEEEECCCCccchhhhccccCCCCcEEEEEcC
Q 001999 254 RYVLFLDGVSSEINFKEIGIHDDHGRGKVVFACR 287 (984)
Q Consensus 254 r~LlVlDdv~~~~~~~~~~~~~~~~gs~ilvTTR 287 (984)
.=.|++|.+.+.+.+... +.....|-.|+.|+-
T Consensus 196 pd~i~vgEird~~~~~~~-l~aa~tGh~v~~T~H 228 (343)
T TIGR01420 196 PDVILIGEMRDLETVELA-LTAAETGHLVFGTLH 228 (343)
T ss_pred CCEEEEeCCCCHHHHHHH-HHHHHcCCcEEEEEc
Confidence 999999999987665432 222334545555543
No 403
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=92.89 E-value=0.38 Score=50.53 Aligned_cols=95 Identities=14% Similarity=0.262 Sum_probs=54.5
Q ss_pred CCccEEEEEcCCCChHHHHHHH-hhhhcccCCCCCeE-EEEEeCCCC-CHHHHHHHHHHHhccC--------ccccch--
Q 001999 173 GGLKKICICGPLGVGKTTIMEN-SHDSVGESGRFDII-FWVNVNTDG-NISDIQEIILERLKVN--------AKELDN-- 239 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~-~~~~~~~~~~F~~~-~wv~vs~~~-~~~~i~~~i~~~l~~~--------~~~~~~-- 239 (984)
.+-.-++|+|..|+|||+||.. ..... +-+.+ +++-+.+.. .+.++.+++.+.-... .++...
T Consensus 67 grGQr~~Ifg~~g~GKt~L~l~~i~~~~----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r 142 (274)
T cd01132 67 GRGQRELIIGDRQTGKTAIAIDTIINQK----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQ 142 (274)
T ss_pred ccCCEEEeeCCCCCCccHHHHHHHHHhc----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHH
Confidence 4567889999999999999743 33222 22334 677777654 4566666665432111 111111
Q ss_pred ---HHHHHHHHHHH--cCCcEEEEEECCCCc-cchhhh
Q 001999 240 ---AQRADNISKEL--KDKRYVLFLDGVSSE-INFKEI 271 (984)
Q Consensus 240 ---~~~~~~l~~~L--~~kr~LlVlDdv~~~-~~~~~~ 271 (984)
....-.+.+++ +|+.+|||+||+-.. ..+.++
T Consensus 143 ~~a~~~a~aiAE~fr~~G~~Vlvl~DslTr~A~A~rEi 180 (274)
T cd01132 143 YLAPYTGCAMGEYFMDNGKHALIIYDDLSKQAVAYRQM 180 (274)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEcChHHHHHHHHHH
Confidence 11122333443 589999999999664 344554
No 404
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=92.89 E-value=0.71 Score=52.05 Aligned_cols=26 Identities=27% Similarity=0.183 Sum_probs=21.3
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhhc
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDSV 199 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 199 (984)
...+|.++|..|+||||.|.......
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l 124 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYY 124 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999998844333
No 405
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=92.88 E-value=0.65 Score=47.76 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=20.9
Q ss_pred CCccEEEEEcCCCChHHHHHHHhh
Q 001999 173 GGLKKICICGPLGVGKTTIMENSH 196 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~ 196 (984)
....+++|+|..|.|||||++...
T Consensus 35 ~~Ge~~~i~G~nGsGKSTLl~~i~ 58 (214)
T PRK13543 35 DAGEALLVQGDNGAGKTTLLRVLA 58 (214)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHh
Confidence 456799999999999999999833
No 406
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=92.85 E-value=1.5 Score=53.72 Aligned_cols=45 Identities=20% Similarity=0.254 Sum_probs=34.9
Q ss_pred CCCCchHHHHHHHHHHhcc--CCccEEEEEcCCCChHHHHHHHhhhh
Q 001999 154 SKFPSHKEYVETLEKHLSS--GGLKKICICGPLGVGKTTIMENSHDS 198 (984)
Q Consensus 154 ~~~vgr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~~~~~ 198 (984)
.+++|+...+..+.+.+.. ..-.-|.|+|..|+|||++|+..+..
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~ 422 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNL 422 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHh
Confidence 4689998888887766653 33457789999999999999995544
No 407
>PRK00131 aroK shikimate kinase; Reviewed
Probab=92.83 E-value=0.095 Score=51.89 Aligned_cols=27 Identities=30% Similarity=0.374 Sum_probs=23.4
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
+...|.++|++|+||||+|+...+...
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 346899999999999999999877764
No 408
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=92.81 E-value=0.15 Score=51.99 Aligned_cols=37 Identities=19% Similarity=0.314 Sum_probs=22.6
Q ss_pred hhhccCCCcEEEecCcccc-ccchh----hhccCCCCeeecc
Q 001999 586 EIRYLQKLEILDVRHTRIQ-CLPSE----IGQLIKLKCLRVS 622 (984)
Q Consensus 586 ~i~~L~~L~~L~l~~~~l~-~lp~~----~~~L~~L~~L~l~ 622 (984)
.+-+|++|++.+++.|.+. ..|.. +.+-+.|.||.++
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~ 128 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLN 128 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEee
Confidence 3456677777777777554 33332 4455677777776
No 409
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=92.81 E-value=1 Score=47.74 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=20.9
Q ss_pred CCccEEEEEcCCCChHHHHHHHhh
Q 001999 173 GGLKKICICGPLGVGKTTIMENSH 196 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~ 196 (984)
..-.+++|+|..|.|||||++...
T Consensus 36 ~~Ge~~~I~G~NGsGKSTLlk~l~ 59 (257)
T PRK11247 36 PAGQFVAVVGRSGCGKSTLLRLLA 59 (257)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 456799999999999999999933
No 410
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=92.80 E-value=0.4 Score=53.99 Aligned_cols=88 Identities=20% Similarity=0.259 Sum_probs=50.8
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCC-CCCHHHHHHHHHHHhccC--------ccccch----
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNT-DGNISDIQEIILERLKVN--------AKELDN---- 239 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~-~~~~~~i~~~i~~~l~~~--------~~~~~~---- 239 (984)
.+...++|+|..|+|||||++......+ . +..+.+.+.. .-.+.++.++.+..-+.. .+....
T Consensus 138 ~~Gq~i~I~G~sG~GKTtLl~~I~~~~~--~--~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~ 213 (418)
T TIGR03498 138 CRGQRLGIFAGSGVGKSTLLSMLARNTD--A--DVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQ 213 (418)
T ss_pred cCCcEEEEECCCCCChHHHHHHHhCCCC--C--CEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHH
Confidence 4567899999999999999988655543 2 2223333333 334555555544432111 111111
Q ss_pred -HHHHHHHHHHH--cCCcEEEEEECCCC
Q 001999 240 -AQRADNISKEL--KDKRYVLFLDGVSS 264 (984)
Q Consensus 240 -~~~~~~l~~~L--~~kr~LlVlDdv~~ 264 (984)
....-.+.+++ +|+++|+++||+-.
T Consensus 214 a~~~a~~iAEyfrd~G~~Vll~~DslTr 241 (418)
T TIGR03498 214 AAYTATAIAEYFRDQGKDVLLLMDSVTR 241 (418)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 12233355555 58999999999854
No 411
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=92.71 E-value=0.31 Score=49.84 Aligned_cols=119 Identities=14% Similarity=0.083 Sum_probs=55.0
Q ss_pred hhcccccCeEecCCCcccccCch----hhhccCCCcEEEecCccccccch--------------hhhccCCCCeeecccc
Q 001999 563 ISRLINLNALFLRSCSLLFQLPK----EIRYLQKLEILDVRHTRIQCLPS--------------EIGQLIKLKCLRVSWV 624 (984)
Q Consensus 563 i~~l~~L~~L~L~~c~~l~~lp~----~i~~L~~L~~L~l~~~~l~~lp~--------------~~~~L~~L~~L~l~~~ 624 (984)
+-+|++|+..+|++|..-...|. .|++-++|.+|.+++|.+..+.. ....-+.|+....+
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicg-- 165 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICG-- 165 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEec--
Confidence 34455666666666543333333 24455666666666665542211 11233556666554
Q ss_pred cccCccccCCCCCCc-ccchhhhhccccccceeeeecCCchhHHhhhhhhhHHHhhccCCCceEEEecCC
Q 001999 625 ENVGNHTHAGAWPGE-MISSNIISKLCLLEELIIEVLDPSDRRWKQNVESIAGEIAALEQLTTLHFYFPT 693 (984)
Q Consensus 625 ~~~~~~~l~~~~~~~-~ip~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 693 (984)
.+..-. |. ......+..-.+|+++.+....+... ....-....+..+.+|+.|++.-+.
T Consensus 166 ---rNRlen----gs~~~~a~~l~sh~~lk~vki~qNgIrpe---gv~~L~~~gl~y~~~LevLDlqDNt 225 (388)
T COG5238 166 ---RNRLEN----GSKELSAALLESHENLKEVKIQQNGIRPE---GVTMLAFLGLFYSHSLEVLDLQDNT 225 (388)
T ss_pred ---cchhcc----CcHHHHHHHHHhhcCceeEEeeecCcCcc---hhHHHHHHHHHHhCcceeeeccccc
Confidence 221111 00 00111122224666666664332210 0112234455667888888887544
No 412
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=92.68 E-value=0.24 Score=52.77 Aligned_cols=51 Identities=18% Similarity=0.216 Sum_probs=39.3
Q ss_pred CCccEEEEEcCCCChHHHHHHH-hhhhcccCCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 001999 173 GGLKKICICGPLGVGKTTIMEN-SHDSVGESGRFDIIFWVNVNTDGNISDIQEIILE 228 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~-~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~ 228 (984)
+..+++.|+|.+|+|||++|.+ .++..+ +...++||+... +...+.+...+
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~---~ge~vlyvs~~e--~~~~l~~~~~~ 72 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGAR---EGEPVLYVSTEE--SPEELLENARS 72 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHHh---cCCcEEEEEecC--CHHHHHHHHHH
Confidence 5789999999999999999999 555554 478899998877 44555555444
No 413
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=92.67 E-value=0.24 Score=55.21 Aligned_cols=86 Identities=19% Similarity=0.308 Sum_probs=48.2
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHHHHHhccCccccc--hHHHHHHHHHHHc
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEIILERLKVNAKELD--NAQRADNISKELK 251 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~--~~~~~~~l~~~L~ 251 (984)
...++.|.|.+|+|||||+.+...... ..-..++|++.... ...+. .-++.++...+... .+.....+.+.+.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a--~~g~~VlYvs~EEs--~~qi~-~Ra~rlg~~~~~l~l~~e~~le~I~~~i~ 155 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLA--KRGGKVLYVSGEES--PEQIK-LRADRLGISTENLYLLAETNLEDILASIE 155 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHH--hcCCeEEEEECCcC--HHHHH-HHHHHcCCCcccEEEEccCcHHHHHHHHH
Confidence 467999999999999999999554443 22346778875443 33322 22344443322110 0111222333332
Q ss_pred -CCcEEEEEECCCC
Q 001999 252 -DKRYVLFLDGVSS 264 (984)
Q Consensus 252 -~kr~LlVlDdv~~ 264 (984)
.+.-+||+|.+..
T Consensus 156 ~~~~~lVVIDSIq~ 169 (372)
T cd01121 156 ELKPDLVIIDSIQT 169 (372)
T ss_pred hcCCcEEEEcchHH
Confidence 3666888888753
No 414
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=92.64 E-value=0.55 Score=53.26 Aligned_cols=91 Identities=18% Similarity=0.239 Sum_probs=57.0
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCC-CHHHHHHHHHHHhccC--------ccccch----
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDG-NISDIQEIILERLKVN--------AKELDN---- 239 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~--------~~~~~~---- 239 (984)
.+-.-++|+|..|+|||||+.+....... ++=+.++++-+.+.. .+.++.+++...=... .+....
T Consensus 142 gkGQR~gIfa~~GvGKt~Ll~~i~~~~~~-~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~ 220 (463)
T PRK09280 142 AKGGKIGLFGGAGVGKTVLIQELINNIAK-EHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLR 220 (463)
T ss_pred ccCCEEEeecCCCCChhHHHHHHHHHHHh-cCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 45678999999999999999984333321 112467778786654 4566666666532111 111111
Q ss_pred -HHHHHHHHHHH---cCCcEEEEEECCCC
Q 001999 240 -AQRADNISKEL---KDKRYVLFLDGVSS 264 (984)
Q Consensus 240 -~~~~~~l~~~L---~~kr~LlVlDdv~~ 264 (984)
....-.+.+++ +|+++||++||+-.
T Consensus 221 a~~~a~tiAEyfrd~~G~~VLll~DslTR 249 (463)
T PRK09280 221 VALTGLTMAEYFRDVEGQDVLLFIDNIFR 249 (463)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecchHH
Confidence 22334466666 67999999999954
No 415
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=92.63 E-value=0.37 Score=54.43 Aligned_cols=92 Identities=13% Similarity=0.167 Sum_probs=57.9
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCC-HHHHHHHHHHHhccC--------ccccch----
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGN-ISDIQEIILERLKVN--------AKELDN---- 239 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~-~~~i~~~i~~~l~~~--------~~~~~~---- 239 (984)
.+-.-++|+|..|+|||+|+.+....... .+-+.++++-+.+... +.++.+++...=... .+....
T Consensus 136 gkGQr~~Ifg~~G~GKt~l~~~~~~~~~~-~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~ 214 (449)
T TIGR03305 136 ERGGKAGLFGGAGVGKTVLLTEMIHNMVG-QHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFR 214 (449)
T ss_pred ccCCEEEeecCCCCChhHHHHHHHHHHHh-cCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHH
Confidence 45678999999999999999993333321 3347888998877653 556666665431111 111111
Q ss_pred -HHHHHHHHHHH---cCCcEEEEEECCCCc
Q 001999 240 -AQRADNISKEL---KDKRYVLFLDGVSSE 265 (984)
Q Consensus 240 -~~~~~~l~~~L---~~kr~LlVlDdv~~~ 265 (984)
....-.+.+++ +|+++|+++||+-..
T Consensus 215 ~~~~a~tiAEyfrd~~G~~VLl~~DslTR~ 244 (449)
T TIGR03305 215 VGHTALTMAEYFRDDEKQDVLLLIDNIFRF 244 (449)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecChHHH
Confidence 22334456665 468999999999553
No 416
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=92.62 E-value=7.4 Score=43.31 Aligned_cols=27 Identities=26% Similarity=0.220 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
...||-.||.-|.||||-|-.....++
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lk 125 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLK 125 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHH
Confidence 468999999999999999988666555
No 417
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=92.61 E-value=0.07 Score=48.66 Aligned_cols=28 Identities=36% Similarity=0.472 Sum_probs=19.4
Q ss_pred EEEEcCCCChHHHHHHHhhhhcccCCCCCe
Q 001999 178 ICICGPLGVGKTTIMENSHDSVGESGRFDI 207 (984)
Q Consensus 178 i~I~G~gGiGKTtLa~~~~~~~~~~~~F~~ 207 (984)
+-|.|.+|+||||+|+.....+. ..|..
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~--~~f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLG--LSFKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT----EEE
T ss_pred EeeECCCccHHHHHHHHHHHHcC--CceeE
Confidence 56899999999999999888887 77743
No 418
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=92.60 E-value=0.11 Score=51.64 Aligned_cols=24 Identities=33% Similarity=0.551 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHhhhhcc
Q 001999 177 KICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 177 vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
+|+|.|.+|+||||||+......+
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~ 24 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLR 24 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999666654
No 419
>PRK13531 regulatory ATPase RavA; Provisional
Probab=92.60 E-value=0.18 Score=57.18 Aligned_cols=43 Identities=16% Similarity=0.212 Sum_probs=36.1
Q ss_pred CCchHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 156 FPSHKEYVETLEKHLSSGGLKKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 156 ~vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
++||++.++.+...+..+ .-+-+.|++|+|||++|+.......
T Consensus 22 i~gre~vI~lll~aalag--~hVLL~GpPGTGKT~LAraLa~~~~ 64 (498)
T PRK13531 22 LYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAFQ 64 (498)
T ss_pred ccCcHHHHHHHHHHHccC--CCEEEECCCChhHHHHHHHHHHHhc
Confidence 899999999998877643 4577999999999999999766654
No 420
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.57 E-value=0.66 Score=52.25 Aligned_cols=22 Identities=36% Similarity=0.433 Sum_probs=19.6
Q ss_pred CccEEEEEcCCCChHHHHHHHh
Q 001999 174 GLKKICICGPLGVGKTTIMENS 195 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~ 195 (984)
...+|+++|+.|+||||++...
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakL 211 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKL 211 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 4579999999999999999883
No 421
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=92.55 E-value=0.65 Score=48.26 Aligned_cols=49 Identities=12% Similarity=0.107 Sum_probs=32.9
Q ss_pred CCccEEEEEcCCCChHHHHHHH-hhhhcccCCCCCeEEEEEeCCCCCHHHHHHHH
Q 001999 173 GGLKKICICGPLGVGKTTIMEN-SHDSVGESGRFDIIFWVNVNTDGNISDIQEII 226 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~-~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i 226 (984)
+...++.|.|..|+||||+|.+ .+...+ .. ...++++.. -+...+.+.+
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~--~g-~~~~yi~~e--~~~~~~~~~~ 71 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFLQ--NG-YSVSYVSTQ--LTTTEFIKQM 71 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHh--CC-CcEEEEeCC--CCHHHHHHHH
Confidence 3467999999999999999876 444444 33 345666633 3455666665
No 422
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=92.54 E-value=5.3 Score=48.57 Aligned_cols=50 Identities=22% Similarity=0.284 Sum_probs=31.6
Q ss_pred HHHHHHHHcCCcEEEEEECCCCccchh--hh----ccccCCCCcEEEEEcCCcccc
Q 001999 243 ADNISKELKDKRYVLFLDGVSSEINFK--EI----GIHDDHGRGKVVFACRSREFC 292 (984)
Q Consensus 243 ~~~l~~~L~~kr~LlVlDdv~~~~~~~--~~----~~~~~~~gs~ilvTTR~~~v~ 292 (984)
.-.|.+.|-.++-+|+||..-+.-|-+ +. ..+.......|+||=|...+.
T Consensus 617 rlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~ 672 (709)
T COG2274 617 RLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIR 672 (709)
T ss_pred HHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhh
Confidence 344678888999999999976543221 11 112334467888888776554
No 423
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=92.54 E-value=0.18 Score=45.85 Aligned_cols=43 Identities=14% Similarity=0.118 Sum_probs=32.8
Q ss_pred CCCchHHHHHHHHHHhcc-------CCccEEEEEcCCCChHHHHHHHhhh
Q 001999 155 KFPSHKEYVETLEKHLSS-------GGLKKICICGPLGVGKTTIMENSHD 197 (984)
Q Consensus 155 ~~vgr~~~~~~l~~~L~~-------~~~~vi~I~G~gGiGKTtLa~~~~~ 197 (984)
.++|.+-..+.+++.+.+ .+.-|++..|..|+|||.+++...+
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~ 75 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAE 75 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHH
Confidence 467877666666666543 4678999999999999999998433
No 424
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=92.54 E-value=0.91 Score=47.94 Aligned_cols=25 Identities=28% Similarity=0.389 Sum_probs=21.4
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhh
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHD 197 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~ 197 (984)
..-.+++|+|..|.|||||++....
T Consensus 28 ~~Ge~~~I~G~NGsGKSTLl~~i~G 52 (251)
T PRK09544 28 KPGKILTLLGPNGAGKSTLVRVVLG 52 (251)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhC
Confidence 4567999999999999999999443
No 425
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=92.53 E-value=0.15 Score=50.92 Aligned_cols=36 Identities=22% Similarity=0.399 Sum_probs=29.4
Q ss_pred ccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEE
Q 001999 175 LKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVN 212 (984)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~ 212 (984)
.++|.|+|+.|+|||||++...+... .+|...+..+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~--~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFP--DKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHST--TTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcc--cccccceeec
Confidence 47899999999999999999777776 7786555554
No 426
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=92.46 E-value=0.33 Score=57.94 Aligned_cols=77 Identities=14% Similarity=0.138 Sum_probs=51.9
Q ss_pred CCCCCCchHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHHHHHhc
Q 001999 152 HASKFPSHKEYVETLEKHLSSGGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEIILERLK 231 (984)
Q Consensus 152 ~~~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~ 231 (984)
..++++|.++.++.+...+.... -+.++|+.|+||||+|+...+.+.. ..|...+++. ....+...+++.+..+++
T Consensus 16 ~~~~viG~~~a~~~l~~a~~~~~--~~ll~G~pG~GKT~la~~la~~l~~-~~~~~~~~~~-n~~~~~~~~~~~v~~~~g 91 (608)
T TIGR00764 16 LIDQVIGQEEAVEIIKKAAKQKR--NVLLIGEPGVGKSMLAKAMAELLPD-EELEDILVYP-NPEDPNMPRIVEVPAGEG 91 (608)
T ss_pred hHhhccCHHHHHHHHHHHHHcCC--CEEEECCCCCCHHHHHHHHHHHcCc-hhheeEEEEe-CCCCCchHHHHHHHHhhc
Confidence 34668999999888877776543 5559999999999999997777751 2333333332 222345566777777665
Q ss_pred c
Q 001999 232 V 232 (984)
Q Consensus 232 ~ 232 (984)
.
T Consensus 92 ~ 92 (608)
T TIGR00764 92 R 92 (608)
T ss_pred h
Confidence 4
No 427
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=92.41 E-value=0.17 Score=51.23 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=21.1
Q ss_pred CCccEEEEEcCCCChHHHHHHHhh
Q 001999 173 GGLKKICICGPLGVGKTTIMENSH 196 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~ 196 (984)
....+++|+|.+|+|||||++...
T Consensus 31 ~~Ge~lgivGeSGsGKSTL~r~l~ 54 (252)
T COG1124 31 ERGETLGIVGESGSGKSTLARLLA 54 (252)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHh
Confidence 567899999999999999999833
No 428
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=92.40 E-value=0.095 Score=48.46 Aligned_cols=35 Identities=23% Similarity=0.452 Sum_probs=27.4
Q ss_pred ccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCC
Q 001999 175 LKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTD 216 (984)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~ 216 (984)
.+-|.|.|-+|+||||+|....+... .-|+++|+-
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~-------~~~i~isd~ 41 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTG-------LEYIEISDL 41 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhC-------CceEehhhH
Confidence 35578999999999999999776654 457777763
No 429
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=92.35 E-value=0.082 Score=53.67 Aligned_cols=23 Identities=39% Similarity=0.512 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHhhhhc
Q 001999 177 KICICGPLGVGKTTIMENSHDSV 199 (984)
Q Consensus 177 vi~I~G~gGiGKTtLa~~~~~~~ 199 (984)
+|+|.|.+|+||||+|+......
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999955443
No 430
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=92.35 E-value=0.33 Score=52.46 Aligned_cols=85 Identities=18% Similarity=0.160 Sum_probs=50.9
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHHHHHhccCccc-----cc-hHHHHHHH
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEIILERLKVNAKE-----LD-NAQRADNI 246 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~-----~~-~~~~~~~l 246 (984)
+..+++-|+|+.|+||||||.+...... +.-...+|+.....+|... +++++.+.+. .+ .++....+
T Consensus 51 p~G~ivEi~G~~ssGKttLaL~~ia~~q--~~g~~~a~ID~e~~ld~~~-----a~~lGvdl~rllv~~P~~~E~al~~~ 123 (322)
T PF00154_consen 51 PRGRIVEIYGPESSGKTTLALHAIAEAQ--KQGGICAFIDAEHALDPEY-----AESLGVDLDRLLVVQPDTGEQALWIA 123 (322)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHH--HTT-EEEEEESSS---HHH-----HHHTT--GGGEEEEE-SSHHHHHHHH
T ss_pred ccCceEEEeCCCCCchhhhHHHHHHhhh--cccceeEEecCcccchhhH-----HHhcCccccceEEecCCcHHHHHHHH
Confidence 4568999999999999999999444443 3345789999988877654 3344443221 11 14444444
Q ss_pred HHHHcC-CcEEEEEECCCC
Q 001999 247 SKELKD-KRYVLFLDGVSS 264 (984)
Q Consensus 247 ~~~L~~-kr~LlVlDdv~~ 264 (984)
...++. ..-++|+|-|-.
T Consensus 124 e~lirsg~~~lVVvDSv~a 142 (322)
T PF00154_consen 124 EQLIRSGAVDLVVVDSVAA 142 (322)
T ss_dssp HHHHHTTSESEEEEE-CTT
T ss_pred HHHhhcccccEEEEecCcc
Confidence 455543 445889999864
No 431
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=92.33 E-value=0.11 Score=49.09 Aligned_cols=24 Identities=33% Similarity=0.652 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHhhhhcc
Q 001999 177 KICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 177 vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
.|+|+|+.|+|||||++...+...
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCC
Confidence 378999999999999999665544
No 432
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=92.31 E-value=1.3 Score=42.23 Aligned_cols=27 Identities=30% Similarity=0.477 Sum_probs=22.6
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
....|+|.|++|.||+||.+.++.-+.
T Consensus 28 ~Ge~iaitGPSG~GKStllk~va~Lis 54 (223)
T COG4619 28 AGEFIAITGPSGCGKSTLLKIVASLIS 54 (223)
T ss_pred CCceEEEeCCCCccHHHHHHHHHhccC
Confidence 456899999999999999999766553
No 433
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.29 E-value=0.94 Score=54.67 Aligned_cols=86 Identities=21% Similarity=0.224 Sum_probs=43.8
Q ss_pred ccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCC--HHHHHHHHHHHhccCccccch-HHHHHHHHHHHc
Q 001999 175 LKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGN--ISDIQEIILERLKVNAKELDN-AQRADNISKELK 251 (984)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~--~~~i~~~i~~~l~~~~~~~~~-~~~~~~l~~~L~ 251 (984)
.+||+++|+.|+||||.+.+..........-..+..++ .+.+. ..+-++...+.++.......+ +++...+. .++
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit-~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~-~~~ 262 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLT-TDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALA-ALG 262 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEec-CcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHH-Hhc
Confidence 47999999999999999888433331001112344443 22333 334455555555543322212 33333333 334
Q ss_pred CCcEEEEEECCC
Q 001999 252 DKRYVLFLDGVS 263 (984)
Q Consensus 252 ~kr~LlVlDdv~ 263 (984)
++. +|++|=.-
T Consensus 263 ~~D-~VLIDTAG 273 (767)
T PRK14723 263 DKH-LVLIDTVG 273 (767)
T ss_pred CCC-EEEEeCCC
Confidence 443 55666554
No 434
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=92.25 E-value=0.85 Score=47.45 Aligned_cols=48 Identities=17% Similarity=0.165 Sum_probs=32.7
Q ss_pred CCccEEEEEcCCCChHHHHHHH-hhhhcccCCCCCeEEEEEeCCCCCHHHHHHH
Q 001999 173 GGLKKICICGPLGVGKTTIMEN-SHDSVGESGRFDIIFWVNVNTDGNISDIQEI 225 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~-~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~ 225 (984)
....++.|.|.+|+||||+|.+ ..+..+ . -...+|++... +...+.+.
T Consensus 18 ~~G~~~~i~G~~G~GKT~l~~~~~~~~~~--~-g~~~~~is~e~--~~~~i~~~ 66 (229)
T TIGR03881 18 PRGFFVAVTGEPGTGKTIFCLHFAYKGLR--D-GDPVIYVTTEE--SRESIIRQ 66 (229)
T ss_pred cCCeEEEEECCCCCChHHHHHHHHHHHHh--c-CCeEEEEEccC--CHHHHHHH
Confidence 4568999999999999999998 333333 2 24678887644 34444433
No 435
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=92.24 E-value=1.3 Score=48.38 Aligned_cols=24 Identities=29% Similarity=0.310 Sum_probs=20.8
Q ss_pred CCccEEEEEcCCCChHHHHHHHhh
Q 001999 173 GGLKKICICGPLGVGKTTIMENSH 196 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~ 196 (984)
....+++|+|+.|.|||||.+...
T Consensus 17 ~~Ge~~~l~G~NGaGKSTLl~~l~ 40 (302)
T TIGR01188 17 REGEVFGFLGPNGAGKTTTIRMLT 40 (302)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHh
Confidence 456799999999999999999843
No 436
>PRK04182 cytidylate kinase; Provisional
Probab=92.23 E-value=0.46 Score=47.21 Aligned_cols=24 Identities=42% Similarity=0.638 Sum_probs=21.5
Q ss_pred EEEEEcCCCChHHHHHHHhhhhcc
Q 001999 177 KICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 177 vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
+|.|.|+.|+||||+|+...++..
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg 25 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 799999999999999999877664
No 437
>PRK14532 adenylate kinase; Provisional
Probab=92.19 E-value=0.46 Score=47.70 Aligned_cols=23 Identities=26% Similarity=0.432 Sum_probs=19.7
Q ss_pred EEEEcCCCChHHHHHHHhhhhcc
Q 001999 178 ICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 178 i~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
|.|+|++|+||||+|+...+...
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~g 25 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEERG 25 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 77899999999999999766543
No 438
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.17 E-value=0.89 Score=52.14 Aligned_cols=24 Identities=33% Similarity=0.419 Sum_probs=20.5
Q ss_pred ccEEEEEcCCCChHHHHHHHhhhh
Q 001999 175 LKKICICGPLGVGKTTIMENSHDS 198 (984)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~~~~~ 198 (984)
..|++++|+.|+||||.+.+....
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~ 279 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAAR 279 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHH
Confidence 479999999999999999994433
No 439
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=92.15 E-value=0.67 Score=48.73 Aligned_cols=93 Identities=13% Similarity=0.084 Sum_probs=57.4
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhcc--cCCCCCeEEEEEeCCCC-CHHHHHHHHHHHhccC--------ccccch--
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSVG--ESGRFDIIFWVNVNTDG-NISDIQEIILERLKVN--------AKELDN-- 239 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~--~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~--------~~~~~~-- 239 (984)
.+-.-++|+|-.|+|||+|+....+... ...+-+..+++-+.+.. ++.++.+++.+.=... .++...
T Consensus 67 g~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r 146 (276)
T cd01135 67 VRGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIER 146 (276)
T ss_pred ccCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHH
Confidence 4567789999999999999988332221 11234778899888765 4566766665542111 011110
Q ss_pred ---HHHHHHHHHHH---cCCcEEEEEECCCCc
Q 001999 240 ---AQRADNISKEL---KDKRYVLFLDGVSSE 265 (984)
Q Consensus 240 ---~~~~~~l~~~L---~~kr~LlVlDdv~~~ 265 (984)
....-.+.+++ +++++|+++||+-..
T Consensus 147 ~~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr~ 178 (276)
T cd01135 147 IITPRMALTTAEYLAYEKGKHVLVILTDMTNY 178 (276)
T ss_pred HHHHHHHHHHHHHHHhccCCeEEEEEcChhHH
Confidence 12223345555 378999999998654
No 440
>PRK13947 shikimate kinase; Provisional
Probab=92.14 E-value=0.11 Score=51.27 Aligned_cols=24 Identities=29% Similarity=0.508 Sum_probs=21.4
Q ss_pred EEEEEcCCCChHHHHHHHhhhhcc
Q 001999 177 KICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 177 vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
-|.|+|++|+||||+|+...+...
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg 26 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLS 26 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999877765
No 441
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=92.11 E-value=0.21 Score=54.76 Aligned_cols=45 Identities=16% Similarity=0.183 Sum_probs=38.0
Q ss_pred CCCCCchHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHhhh
Q 001999 153 ASKFPSHKEYVETLEKHLSSGGLKKICICGPLGVGKTTIMENSHD 197 (984)
Q Consensus 153 ~~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~ 197 (984)
-+.+||.++.+..++-.+.++...-+.|.|..|+|||||++....
T Consensus 3 f~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~ 47 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAA 47 (337)
T ss_pred ccccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHH
Confidence 456899999999988777777777788999999999999999543
No 442
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=92.09 E-value=0.63 Score=52.64 Aligned_cols=92 Identities=17% Similarity=0.229 Sum_probs=57.2
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCC-CHHHHHHHHHHHhccC--------ccccch----
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDG-NISDIQEIILERLKVN--------AKELDN---- 239 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~--------~~~~~~---- 239 (984)
.+-.-++|.|..|+|||||+.+....... ++=+.++++-+.+.. .+.++.+++.+.=... .+....
T Consensus 141 g~GQr~~If~~~G~GKt~L~~~~~~~~~~-~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~ 219 (461)
T TIGR01039 141 AKGGKIGLFGGAGVGKTVLIQELINNIAK-EHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMR 219 (461)
T ss_pred ccCCEEEeecCCCCChHHHHHHHHHHHHh-cCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 45678999999999999999994443321 222467788786654 4566666665431111 111111
Q ss_pred -HHHHHHHHHHH---cCCcEEEEEECCCCc
Q 001999 240 -AQRADNISKEL---KDKRYVLFLDGVSSE 265 (984)
Q Consensus 240 -~~~~~~l~~~L---~~kr~LlVlDdv~~~ 265 (984)
....-.+.+++ +|+++|+++||+-..
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLll~DslTR~ 249 (461)
T TIGR01039 220 VALTGLTMAEYFRDEQGQDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHHHHHhcCCeeEEEecchhHH
Confidence 22334456666 478999999999653
No 443
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=92.08 E-value=0.48 Score=51.78 Aligned_cols=23 Identities=22% Similarity=0.475 Sum_probs=19.4
Q ss_pred EEEEcCCCChHHHHHHHhhhhcc
Q 001999 178 ICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 178 i~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
+.+.|++|.||||+++.......
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~ 24 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLR 24 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999666553
No 444
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=92.07 E-value=0.14 Score=54.98 Aligned_cols=21 Identities=38% Similarity=0.619 Sum_probs=18.4
Q ss_pred cEEEEEcCCCChHHHHHHHhh
Q 001999 176 KKICICGPLGVGKTTIMENSH 196 (984)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~~~ 196 (984)
+.|+|+|.||+||||++....
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA 21 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIA 21 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHH
Confidence 479999999999999998833
No 445
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=92.06 E-value=0.13 Score=50.27 Aligned_cols=27 Identities=22% Similarity=0.282 Sum_probs=22.6
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
..++++|+|..|+|||||++......+
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~ 31 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALC 31 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHh
Confidence 467999999999999999999555554
No 446
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=92.05 E-value=0.11 Score=51.82 Aligned_cols=23 Identities=26% Similarity=0.290 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHhhhhc
Q 001999 177 KICICGPLGVGKTTIMENSHDSV 199 (984)
Q Consensus 177 vi~I~G~gGiGKTtLa~~~~~~~ 199 (984)
+|+|.|.+|+||||+|+...+..
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999966654
No 447
>PLN02924 thymidylate kinase
Probab=92.00 E-value=0.65 Score=47.73 Aligned_cols=54 Identities=13% Similarity=0.060 Sum_probs=33.3
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEIILE 228 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~ 228 (984)
....|+|.|..|+||||+|+...+..+. .++....+-.........+..++++.
T Consensus 15 ~g~~IviEGiDGsGKsTq~~~L~~~l~~-~g~~v~~~~ep~~~~~~g~~ir~~l~ 68 (220)
T PLN02924 15 RGALIVLEGLDRSGKSTQCAKLVSFLKG-LGVAAELWRFPDRTTSVGQMISAYLS 68 (220)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh-cCCCceeeeCCCCCChHHHHHHHHHh
Confidence 3568999999999999999997777652 33444332222222334444444443
No 448
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=92.00 E-value=0.43 Score=56.86 Aligned_cols=78 Identities=10% Similarity=0.120 Sum_probs=58.4
Q ss_pred CCCCCCchHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHHHHHhc
Q 001999 152 HASKFPSHKEYVETLEKHLSSGGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEIILERLK 231 (984)
Q Consensus 152 ~~~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~ 231 (984)
..++++|.++.++.|...+... +.+.++|.+|+||||+|+...+.+. ..+|+..+|..-+ ..+...+++.+..+++
T Consensus 29 ~~~~vigq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l~-~~~~~~~~~~~np-~~~~~~~~~~v~~~~G 104 (637)
T PRK13765 29 LIDQVIGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELLP-KEELQDILVYPNP-EDPNNPKIRTVPAGKG 104 (637)
T ss_pred cHHHcCChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHcC-hHhHHHheEeeCC-CcchHHHHHHHHHhcC
Confidence 3466899999999888777654 4788999999999999999666663 1345777886553 3467788888887766
Q ss_pred cC
Q 001999 232 VN 233 (984)
Q Consensus 232 ~~ 233 (984)
..
T Consensus 105 ~~ 106 (637)
T PRK13765 105 KQ 106 (637)
T ss_pred HH
Confidence 43
No 449
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=91.95 E-value=0.25 Score=53.40 Aligned_cols=47 Identities=23% Similarity=0.376 Sum_probs=41.5
Q ss_pred CCCCchHHHHHHHHHHhcc------CCccEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 154 SKFPSHKEYVETLEKHLSS------GGLKKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 154 ~~~vgr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
..++|.++.++++++.+.. .+-+|+-++|+.|.||||||....+-.+
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le 113 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLE 113 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4689999999999999865 5678999999999999999999777665
No 450
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=91.95 E-value=1.6 Score=42.66 Aligned_cols=52 Identities=12% Similarity=0.070 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHcCCcEEEEEECCCCccchh------hhccccCCCCcEEEEEcCCccc
Q 001999 240 AQRADNISKELKDKRYVLFLDGVSSEINFK------EIGIHDDHGRGKVVFACRSREF 291 (984)
Q Consensus 240 ~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~------~~~~~~~~~gs~ilvTTR~~~v 291 (984)
+++.-.|.+..-.++-|-|||......|-+ .+.......|..||.||-.+..
T Consensus 135 QqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~ 192 (209)
T COG4133 135 QQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLP 192 (209)
T ss_pred HHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccC
Confidence 444445667777889999999987654432 2233367788999999976553
No 451
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=91.93 E-value=0.44 Score=50.60 Aligned_cols=104 Identities=18% Similarity=0.180 Sum_probs=56.6
Q ss_pred CchHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHHHHHhccCccc
Q 001999 157 PSHKEYVETLEKHLSSGGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEIILERLKVNAKE 236 (984)
Q Consensus 157 vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~ 236 (984)
.|...+..+.+..+......+|.|.|..|.||||+++..-..+. ..-..++.+.-..++.... + .++... .
T Consensus 62 lg~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l~all~~i~--~~~~~iitiEdp~E~~~~~----~-~q~~v~--~ 132 (264)
T cd01129 62 LGLKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSALSELN--TPEKNIITVEDPVEYQIPG----I-NQVQVN--E 132 (264)
T ss_pred cCCCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHhhhC--CCCCeEEEECCCceecCCC----c-eEEEeC--C
Confidence 34444333333444444557899999999999999998444443 2111222222121111111 0 011111 1
Q ss_pred cchHHHHHHHHHHHcCCcEEEEEECCCCccchh
Q 001999 237 LDNAQRADNISKELKDKRYVLFLDGVSSEINFK 269 (984)
Q Consensus 237 ~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~ 269 (984)
.........++..|+...=.|+++++.+.+...
T Consensus 133 ~~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~ 165 (264)
T cd01129 133 KAGLTFARGLRAILRQDPDIIMVGEIRDAETAE 165 (264)
T ss_pred cCCcCHHHHHHHHhccCCCEEEeccCCCHHHHH
Confidence 111235566777788888899999999876543
No 452
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=91.93 E-value=1.5 Score=48.44 Aligned_cols=99 Identities=20% Similarity=0.244 Sum_probs=50.1
Q ss_pred HHHHHHHHhccC----CccEEEEEcCCCChHHH-HHHHhhhhcccCCCCCeEEEEEeCC-CCCHHHHHHHHHHHhccCcc
Q 001999 162 YVETLEKHLSSG----GLKKICICGPLGVGKTT-IMENSHDSVGESGRFDIIFWVNVNT-DGNISDIQEIILERLKVNAK 235 (984)
Q Consensus 162 ~~~~l~~~L~~~----~~~vi~I~G~gGiGKTt-La~~~~~~~~~~~~F~~~~wv~vs~-~~~~~~i~~~i~~~l~~~~~ 235 (984)
....+..++.++ +-+||++||+.|+|||| ||+.....+...++ ..+..++... ..-..+-++.-++-++.+..
T Consensus 186 ~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~-~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~ 264 (407)
T COG1419 186 KLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAARYVMLKKK-KKVAIITTDTYRIGAVEQLKTYADIMGVPLE 264 (407)
T ss_pred HHHHHHHhhccccccccCcEEEEECCCCCcHHHHHHHHHHHHHhhccC-cceEEEEeccchhhHHHHHHHHHHHhCCceE
Confidence 334444555543 47999999999999975 66664444310022 2345554322 11233444445555565554
Q ss_pred ccch-HHHHHHHHHHHcCCcEEEEEECCC
Q 001999 236 ELDN-AQRADNISKELKDKRYVLFLDGVS 263 (984)
Q Consensus 236 ~~~~-~~~~~~l~~~L~~kr~LlVlDdv~ 263 (984)
.... .++...+.. +++.+ +|.+|-+.
T Consensus 265 vv~~~~el~~ai~~-l~~~d-~ILVDTaG 291 (407)
T COG1419 265 VVYSPKELAEAIEA-LRDCD-VILVDTAG 291 (407)
T ss_pred EecCHHHHHHHHHH-hhcCC-EEEEeCCC
Confidence 4333 344433332 33343 34445553
No 453
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=91.92 E-value=0.12 Score=49.45 Aligned_cols=24 Identities=38% Similarity=0.588 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHhhhhcc
Q 001999 177 KICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 177 vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
+|.|.|..|+||||+|+...+...
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999766653
No 454
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=91.92 E-value=0.1 Score=46.81 Aligned_cols=23 Identities=35% Similarity=0.603 Sum_probs=18.7
Q ss_pred EEEEcCCCChHHHHHHHhhhhcc
Q 001999 178 ICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 178 i~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
|-|+|.+|+|||++|+.....+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999555443
No 455
>PRK05439 pantothenate kinase; Provisional
Probab=91.87 E-value=0.96 Score=48.81 Aligned_cols=28 Identities=25% Similarity=0.191 Sum_probs=23.3
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
...-+|+|.|.+|+||||+|+.......
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~ 111 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLS 111 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567999999999999999998655553
No 456
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=91.86 E-value=0.56 Score=57.09 Aligned_cols=103 Identities=16% Similarity=0.262 Sum_probs=68.9
Q ss_pred CCCCchHHHHHHHHHHhcc------C--CccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHH
Q 001999 154 SKFPSHKEYVETLEKHLSS------G--GLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEI 225 (984)
Q Consensus 154 ~~~vgr~~~~~~l~~~L~~------~--~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~ 225 (984)
..++|.++.+..|.+.+.. . ..-.+.+.|+.|+|||-||+.....+- +..+..+-++.|. ..+
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~F--gse~~~IriDmse------~~e- 632 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVF--GSEENFIRLDMSE------FQE- 632 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHc--CCccceEEechhh------hhh-
Confidence 4578889998888888764 2 466788999999999999999777765 5566666665544 222
Q ss_pred HHHHhccCccccchHHHHHHHHHHHcCCcE-EEEEECCCCcc
Q 001999 226 ILERLKVNAKELDNAQRADNISKELKDKRY-VLFLDGVSSEI 266 (984)
Q Consensus 226 i~~~l~~~~~~~~~~~~~~~l~~~L~~kr~-LlVlDdv~~~~ 266 (984)
+.+-++.+ +..-..+....|.+.++.++| +|+||||...+
T Consensus 633 vskligsp-~gyvG~e~gg~LteavrrrP~sVVLfdeIEkAh 673 (898)
T KOG1051|consen 633 VSKLIGSP-PGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKAH 673 (898)
T ss_pred hhhccCCC-cccccchhHHHHHHHHhcCCceEEEEechhhcC
Confidence 22222221 111123444577888888875 67789998753
No 457
>PRK05973 replicative DNA helicase; Provisional
Probab=91.86 E-value=0.85 Score=47.19 Aligned_cols=49 Identities=10% Similarity=0.117 Sum_probs=32.8
Q ss_pred CCccEEEEEcCCCChHHHHHHH-hhhhcccCCCCCeEEEEEeCCCCCHHHHHHHH
Q 001999 173 GGLKKICICGPLGVGKTTIMEN-SHDSVGESGRFDIIFWVNVNTDGNISDIQEII 226 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~-~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i 226 (984)
....++.|.|.+|+|||++|.+ .++-.+ .. ..+++++... +...+...+
T Consensus 62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~a~--~G-e~vlyfSlEe--s~~~i~~R~ 111 (237)
T PRK05973 62 KPGDLVLLGARPGHGKTLLGLELAVEAMK--SG-RTGVFFTLEY--TEQDVRDRL 111 (237)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHh--cC-CeEEEEEEeC--CHHHHHHHH
Confidence 3567899999999999999999 344443 32 3466666554 345555554
No 458
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=91.82 E-value=0.58 Score=53.30 Aligned_cols=91 Identities=20% Similarity=0.213 Sum_probs=57.3
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhh-cccCCCCCeEEEEEeCCCC-CHHHHHHHHHHHhccC---------------cc
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDS-VGESGRFDIIFWVNVNTDG-NISDIQEIILERLKVN---------------AK 235 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~-~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~---------------~~ 235 (984)
.+-.-++|+|..|+|||||+.+.... .+ .+=+.++++-+.+.. .+.++...+...-... .+
T Consensus 159 gkGQR~gIfgg~GvGKs~L~~~~~~~~~~--~~~dv~V~~lIGERgrEv~efi~~~~~~~~~~~~~~~~~rsvvv~atsd 236 (494)
T CHL00060 159 RRGGKIGLFGGAGVGKTVLIMELINNIAK--AHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMN 236 (494)
T ss_pred ccCCEEeeecCCCCChhHHHHHHHHHHHH--hcCCeEEEEEeccCchHHHHHHHHHHhcCccccCcccccceEEEEECCC
Confidence 45678999999999999999983333 22 222678888887764 3566666666521100 00
Q ss_pred ccch-----HHHHHHHHHHHc--CC-cEEEEEECCCCc
Q 001999 236 ELDN-----AQRADNISKELK--DK-RYVLFLDGVSSE 265 (984)
Q Consensus 236 ~~~~-----~~~~~~l~~~L~--~k-r~LlVlDdv~~~ 265 (984)
.... ....-.+.++++ ++ ++||++||+-..
T Consensus 237 ~p~~~R~~a~~~A~tiAEyfrd~g~~~VLll~DslTR~ 274 (494)
T CHL00060 237 EPPGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRF 274 (494)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCCEEEEcccchHH
Confidence 0000 233444677773 44 999999999653
No 459
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=91.79 E-value=0.3 Score=50.75 Aligned_cols=85 Identities=16% Similarity=0.220 Sum_probs=49.9
Q ss_pred CCccEEEEEcCCCChHHHHHHH-hhhhcccCCCCCeEEEEEeCCCCCHHHHHHHHHHHhccCc----------------c
Q 001999 173 GGLKKICICGPLGVGKTTIMEN-SHDSVGESGRFDIIFWVNVNTDGNISDIQEIILERLKVNA----------------K 235 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~-~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~----------------~ 235 (984)
+...++.|.|.+|+|||++|.+ .++.++ +.=..++||+... +...+.+.+. +++.+. .
T Consensus 17 p~gs~~li~G~~GsGKT~l~~q~l~~~~~--~~ge~vlyvs~ee--~~~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~ 91 (226)
T PF06745_consen 17 PKGSVVLISGPPGSGKTTLALQFLYNGLK--NFGEKVLYVSFEE--PPEELIENMK-SFGWDLEEYEDSGKLKIIDAFPE 91 (226)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHH--HHT--EEEEESSS---HHHHHHHHH-TTTS-HHHHHHTTSEEEEESSGG
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHhhh--hcCCcEEEEEecC--CHHHHHHHHH-HcCCcHHHHhhcCCEEEEecccc
Confidence 4678999999999999999998 444443 2013577887755 3445554433 332210 0
Q ss_pred -----ccchHHHHHHHHHHHcC-CcEEEEEECC
Q 001999 236 -----ELDNAQRADNISKELKD-KRYVLFLDGV 262 (984)
Q Consensus 236 -----~~~~~~~~~~l~~~L~~-kr~LlVlDdv 262 (984)
..+.+.+...+.+.++. +...+|+|.+
T Consensus 92 ~~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsl 124 (226)
T PF06745_consen 92 RIGWSPNDLEELLSKIREAIEELKPDRVVIDSL 124 (226)
T ss_dssp GST-TSCCHHHHHHHHHHHHHHHTSSEEEEETH
T ss_pred cccccccCHHHHHHHHHHHHHhcCCCEEEEECH
Confidence 01114555666665553 4478888876
No 460
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=91.78 E-value=0.61 Score=46.99 Aligned_cols=52 Identities=21% Similarity=0.328 Sum_probs=30.3
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhhcccCCCC--------CeEEEEEeCCCCCHHHHHHHHH
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDSVGESGRF--------DIIFWVNVNTDGNISDIQEIIL 227 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F--------~~~~wv~vs~~~~~~~i~~~i~ 227 (984)
.-.+..|+|++|+||||++......+-....| ..++|+..... ...+.+.+.
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~--~~~~~~rl~ 90 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS--ESQIARRLR 90 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS---HHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC--HHHHHHHHH
Confidence 44688999999999999999833332211222 26777776654 334444443
No 461
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=91.78 E-value=0.16 Score=50.28 Aligned_cols=26 Identities=19% Similarity=0.266 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 175 LKKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
.++|.+.|++|+||||+|+...+...
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhC
Confidence 36899999999999999999655543
No 462
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=91.78 E-value=0.3 Score=49.12 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=20.2
Q ss_pred ccEEEEEcCCCChHHHHHHHhhh
Q 001999 175 LKKICICGPLGVGKTTIMENSHD 197 (984)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~~~~ 197 (984)
..+|+|+|+.|+||||+|+...+
T Consensus 2 ~~iIglTG~igsGKStva~~~~~ 24 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE 24 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH
Confidence 36899999999999999998554
No 463
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=91.78 E-value=0.4 Score=49.12 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=19.1
Q ss_pred EEEEcCCCChHHHHHHHhhhhc
Q 001999 178 ICICGPLGVGKTTIMENSHDSV 199 (984)
Q Consensus 178 i~I~G~gGiGKTtLa~~~~~~~ 199 (984)
|.|+|++|+||||+|+...++.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6799999999999999966554
No 464
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=91.76 E-value=0.73 Score=51.94 Aligned_cols=88 Identities=23% Similarity=0.290 Sum_probs=51.5
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCC-CHHHHHHHHHHHhccC--------ccccch----
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDG-NISDIQEIILERLKVN--------AKELDN---- 239 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~--------~~~~~~---- 239 (984)
.+...++|+|..|+|||||++......+ -+..+.+.+.... .+.++.+.....=... .+....
T Consensus 135 ~~Gq~~~I~G~sG~GKTtLl~~I~~~~~----~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~ 210 (411)
T TIGR03496 135 GRGQRMGIFAGSGVGKSTLLGMMARYTE----ADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLR 210 (411)
T ss_pred ecCcEEEEECCCCCCHHHHHHHHhcCCC----CCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHH
Confidence 4567899999999999999988554433 2344455565543 3445555444331110 111111
Q ss_pred -HHHHHHHHHHH--cCCcEEEEEECCCC
Q 001999 240 -AQRADNISKEL--KDKRYVLFLDGVSS 264 (984)
Q Consensus 240 -~~~~~~l~~~L--~~kr~LlVlDdv~~ 264 (984)
....-.+.+++ +|+++|+++||+-.
T Consensus 211 a~~~a~tiAEyfr~~G~~Vll~~Dsltr 238 (411)
T TIGR03496 211 AAFYATAIAEYFRDQGKDVLLLMDSLTR 238 (411)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEeChHH
Confidence 12223344555 58999999999854
No 465
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.75 E-value=0.12 Score=29.01 Aligned_cols=16 Identities=38% Similarity=0.746 Sum_probs=7.8
Q ss_pred CCcEEEecCccccccc
Q 001999 592 KLEILDVRHTRIQCLP 607 (984)
Q Consensus 592 ~L~~L~l~~~~l~~lp 607 (984)
+|++|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 5666666666666554
No 466
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=91.75 E-value=0.84 Score=49.78 Aligned_cols=27 Identities=30% Similarity=0.262 Sum_probs=22.7
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
...+|+++|+.|+||||++.......+
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~ 139 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYK 139 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 568999999999999999999555443
No 467
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=91.74 E-value=3.5 Score=41.76 Aligned_cols=50 Identities=14% Similarity=0.273 Sum_probs=37.1
Q ss_pred CCCCchHHHHHHHHHHhcc-------------CCccEEEEEcCCCChHHHHHHHhhhhcccCCCC
Q 001999 154 SKFPSHKEYVETLEKHLSS-------------GGLKKICICGPLGVGKTTIMENSHDSVGESGRF 205 (984)
Q Consensus 154 ~~~vgr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F 205 (984)
.++-|.+-.+.+|.+...- +..+-+.++|++|.|||-||+.+.+... ..|
T Consensus 155 ~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~--a~f 217 (408)
T KOG0727|consen 155 ADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTT--AAF 217 (408)
T ss_pred cccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccc--hhe
Confidence 3456777777777666531 4567788999999999999999877766 444
No 468
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=91.74 E-value=0.82 Score=51.59 Aligned_cols=90 Identities=20% Similarity=0.183 Sum_probs=52.2
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHHHHHhccC--------ccccch-----
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEIILERLKVN--------AKELDN----- 239 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~--------~~~~~~----- 239 (984)
.....++|+|..|.|||||++......+ . ...++...-.+...+.+..+..+..-+.. .+....
T Consensus 154 ~~Gqri~I~G~sG~GKTtLl~~Ia~~~~--~-~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra 230 (432)
T PRK06793 154 GIGQKIGIFAGSGVGKSTLLGMIAKNAK--A-DINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRA 230 (432)
T ss_pred cCCcEEEEECCCCCChHHHHHHHhccCC--C-CeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHH
Confidence 4667899999999999999988544433 1 12233332233356666666555442211 111111
Q ss_pred HHHHHHHHHHH--cCCcEEEEEECCCCc
Q 001999 240 AQRADNISKEL--KDKRYVLFLDGVSSE 265 (984)
Q Consensus 240 ~~~~~~l~~~L--~~kr~LlVlDdv~~~ 265 (984)
......+.+++ +++..||++||+-..
T Consensus 231 ~~~a~~iAEyfr~~G~~VLlilDslTr~ 258 (432)
T PRK06793 231 AKLATSIAEYFRDQGNNVLLMMDSVTRF 258 (432)
T ss_pred HHHHHHHHHHHHHcCCcEEEEecchHHH
Confidence 22233344444 479999999999664
No 469
>PRK13949 shikimate kinase; Provisional
Probab=91.73 E-value=0.14 Score=50.33 Aligned_cols=25 Identities=32% Similarity=0.557 Sum_probs=21.6
Q ss_pred cEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 176 KKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
+-|.|+|+.|+||||+++...+...
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3589999999999999999777765
No 470
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=91.72 E-value=0.82 Score=51.63 Aligned_cols=89 Identities=19% Similarity=0.232 Sum_probs=52.7
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCC-CCHHHHHHHHHHHhcc--------Cccccch----
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTD-GNISDIQEIILERLKV--------NAKELDN---- 239 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~-~~~~~i~~~i~~~l~~--------~~~~~~~---- 239 (984)
.+...++|+|..|+|||||++...... +.+..+++.+... ..+.+.+.+....=.. ..+....
T Consensus 153 ~~GqrigI~G~sG~GKSTLL~~I~~~~----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~ 228 (433)
T PRK07594 153 GEGQRVGIFSAPGVGKSTLLAMLCNAP----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVR 228 (433)
T ss_pred CCCCEEEEECCCCCCccHHHHHhcCCC----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHH
Confidence 566799999999999999998855443 3344566666553 3444555554321100 0011100
Q ss_pred -HHHHHHHHHHH--cCCcEEEEEECCCCc
Q 001999 240 -AQRADNISKEL--KDKRYVLFLDGVSSE 265 (984)
Q Consensus 240 -~~~~~~l~~~L--~~kr~LlVlDdv~~~ 265 (984)
....-.+.+++ +|+++||++||+-..
T Consensus 229 a~~~a~tiAEyfrd~G~~VLl~~Dsltr~ 257 (433)
T PRK07594 229 ALFVATTIAEFFRDNGKRVVLLADSLTRY 257 (433)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeCHHHH
Confidence 12223344555 589999999999653
No 471
>PRK06936 type III secretion system ATPase; Provisional
Probab=91.70 E-value=0.86 Score=51.44 Aligned_cols=89 Identities=20% Similarity=0.286 Sum_probs=54.7
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCC-CHHHHHHHHHHHhccC--------ccccch----
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDG-NISDIQEIILERLKVN--------AKELDN---- 239 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~--------~~~~~~---- 239 (984)
.+...++|+|..|+|||||.+....... -+.++++-+.+.. .+.++.+..+..-+.. .+....
T Consensus 160 ~~Gq~~~I~G~sG~GKStLl~~Ia~~~~----~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~ 235 (439)
T PRK06936 160 GEGQRMGIFAAAGGGKSTLLASLIRSAE----VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAK 235 (439)
T ss_pred cCCCEEEEECCCCCChHHHHHHHhcCCC----CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHH
Confidence 4567899999999999999998665543 2567888787754 3445444433321111 011111
Q ss_pred -HHHHHHHHHHH--cCCcEEEEEECCCCc
Q 001999 240 -AQRADNISKEL--KDKRYVLFLDGVSSE 265 (984)
Q Consensus 240 -~~~~~~l~~~L--~~kr~LlVlDdv~~~ 265 (984)
....-.+.+++ +|+++|+++||+-..
T Consensus 236 a~~~a~tiAEyfrd~G~~Vll~~DslTR~ 264 (439)
T PRK06936 236 AGFVATSIAEYFRDQGKRVLLLMDSVTRF 264 (439)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 11222344554 589999999999653
No 472
>PRK09099 type III secretion system ATPase; Provisional
Probab=91.69 E-value=0.77 Score=52.02 Aligned_cols=90 Identities=20% Similarity=0.231 Sum_probs=52.2
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHHHHHhccC--------ccccch-----
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEIILERLKVN--------AKELDN----- 239 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~--------~~~~~~----- 239 (984)
.+-..++|+|..|+|||||++....... . -..+++..-.+...+.++.+.+...-+.. .+....
T Consensus 161 ~~Gq~~~I~G~sG~GKTtLl~~ia~~~~--~-d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a 237 (441)
T PRK09099 161 GEGQRMGIFAPAGVGKSTLMGMFARGTQ--C-DVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKA 237 (441)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC--C-CeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHH
Confidence 5678999999999999999998554443 1 12344333333345555555554432111 111111
Q ss_pred HHHHHHHHHHH--cCCcEEEEEECCCCc
Q 001999 240 AQRADNISKEL--KDKRYVLFLDGVSSE 265 (984)
Q Consensus 240 ~~~~~~l~~~L--~~kr~LlVlDdv~~~ 265 (984)
....-.+.+++ +|+.+|+++||+-..
T Consensus 238 ~~~a~tiAEyfrd~G~~VLl~~DslTr~ 265 (441)
T PRK09099 238 AYVATAIAEYFRDRGLRVLLMMDSLTRF 265 (441)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 12223344555 589999999998553
No 473
>PRK05922 type III secretion system ATPase; Validated
Probab=91.68 E-value=1.1 Score=50.59 Aligned_cols=89 Identities=17% Similarity=0.220 Sum_probs=51.1
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCC-CCHHHHHHHHHHHhccCc--------cccch----
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTD-GNISDIQEIILERLKVNA--------KELDN---- 239 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~-~~~~~i~~~i~~~l~~~~--------~~~~~---- 239 (984)
.+...++|+|..|+|||||.+......+ .+..+.+.++.. ..+.....+......... +....
T Consensus 155 ~~GqrigI~G~nG~GKSTLL~~Ia~~~~----~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~ 230 (434)
T PRK05922 155 GKGQRIGVFSEPGSGKSSLLSTIAKGSK----STINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVI 230 (434)
T ss_pred cCCcEEEEECCCCCChHHHHHHHhccCC----CCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHH
Confidence 4567799999999999999988554432 233444444443 233444444443332211 00000
Q ss_pred -HHHHHHHHHHH--cCCcEEEEEECCCCc
Q 001999 240 -AQRADNISKEL--KDKRYVLFLDGVSSE 265 (984)
Q Consensus 240 -~~~~~~l~~~L--~~kr~LlVlDdv~~~ 265 (984)
....-.+.+++ +|+++|+++||+-..
T Consensus 231 a~~~a~tiAEyfrd~G~~VLl~~DslTR~ 259 (434)
T PRK05922 231 AGRAAMTIAEYFRDQGHRVLFIMDSLSRW 259 (434)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 22233355555 589999999999543
No 474
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.63 E-value=1.4 Score=47.73 Aligned_cols=60 Identities=22% Similarity=0.125 Sum_probs=34.9
Q ss_pred HHHHHHHHHcCCcEEEEEECCCCccchhhh-----ccc--cCCCCcEEEEEcCCccccc-cCCceEEc
Q 001999 242 RADNISKELKDKRYVLFLDGVSSEINFKEI-----GIH--DDHGRGKVVFACRSREFCW-QADDVIHV 301 (984)
Q Consensus 242 ~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~-----~~~--~~~~gs~ilvTTR~~~v~~-~~~~~~~l 301 (984)
..-.|.+.|-.++-+|++|+--...|.... .+. ....|..||++|.+...+. -+..++.+
T Consensus 152 qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l 219 (290)
T PRK13634 152 RRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVM 219 (290)
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 334466777788889999998765433221 111 2234677888887766543 33344333
No 475
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.61 E-value=0.011 Score=58.68 Aligned_cols=87 Identities=18% Similarity=0.177 Sum_probs=71.1
Q ss_pred CCCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCCcchhcccccCeEecCCCcccccCchhhhccCCCcE
Q 001999 516 MPNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLPPSISRLINLNALFLRSCSLLFQLPKEIRYLQKLEI 595 (984)
Q Consensus 516 ~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~ 595 (984)
...+...+.|+++.|.+..+... |+.+..|..||++.+.+..+|..++.+..++.+++.. ++.+..|.+.+.+++++.
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n-~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~-n~~~~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKN-FSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHK-NNHSQQPKSQKKEPHPKK 115 (326)
T ss_pred hhccceeeeehhhhhHHHhhccc-hHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhc-cchhhCCccccccCCcch
Confidence 35667888888888887777766 7778888888999888888998888888888888876 457888888888999998
Q ss_pred EEecCcccc
Q 001999 596 LDVRHTRIQ 604 (984)
Q Consensus 596 L~l~~~~l~ 604 (984)
++..+|.+.
T Consensus 116 ~e~k~~~~~ 124 (326)
T KOG0473|consen 116 NEQKKTEFF 124 (326)
T ss_pred hhhccCcch
Confidence 888888643
No 476
>PRK14531 adenylate kinase; Provisional
Probab=91.60 E-value=0.41 Score=47.83 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=20.7
Q ss_pred cEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 176 KKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
..|.|+|++|+||||+++...+...
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g 27 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHG 27 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3588999999999999999665543
No 477
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=91.60 E-value=0.13 Score=51.19 Aligned_cols=24 Identities=29% Similarity=0.670 Sum_probs=20.5
Q ss_pred cEEEEEcCCCChHHHHHHHhhhhc
Q 001999 176 KKICICGPLGVGKTTIMENSHDSV 199 (984)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~~~~~~ 199 (984)
.++.|+|+.|+||||+++......
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999955544
No 478
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=91.58 E-value=1.3 Score=52.74 Aligned_cols=26 Identities=31% Similarity=0.468 Sum_probs=21.8
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhh
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDS 198 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~ 198 (984)
....+++|+|+.|.|||||.+.....
T Consensus 25 ~~Ge~~~liG~NGsGKSTLl~~l~Gl 50 (530)
T PRK15064 25 GGGNRYGLIGANGCGKSTFMKILGGD 50 (530)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45679999999999999999994433
No 479
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=91.57 E-value=0.84 Score=46.08 Aligned_cols=25 Identities=32% Similarity=0.199 Sum_probs=22.0
Q ss_pred cEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 176 KKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
..|+|.|..|+||||+++...+...
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~ 28 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQ 28 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999766664
No 480
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=91.57 E-value=0.6 Score=45.91 Aligned_cols=24 Identities=38% Similarity=0.566 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHhhhhcc
Q 001999 177 KICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 177 vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
+|.|.|..|+||||+|+...+...
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg 25 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLS 25 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 799999999999999999776643
No 481
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=91.51 E-value=0.15 Score=45.23 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=20.0
Q ss_pred CccEEEEEcCCCChHHHHHHHhh
Q 001999 174 GLKKICICGPLGVGKTTIMENSH 196 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~ 196 (984)
.-..++|+|+.|.|||||++...
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 45789999999999999999843
No 482
>PTZ00185 ATPase alpha subunit; Provisional
Probab=91.50 E-value=1 Score=51.26 Aligned_cols=92 Identities=16% Similarity=0.182 Sum_probs=51.6
Q ss_pred CCccEEEEEcCCCChHHHHHHH--hhhh-cc---cCCCCCeEEEEEeCCCCCHHHHHHHHHHHhc-cC--------cccc
Q 001999 173 GGLKKICICGPLGVGKTTIMEN--SHDS-VG---ESGRFDIIFWVNVNTDGNISDIQEIILERLK-VN--------AKEL 237 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~--~~~~-~~---~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~-~~--------~~~~ 237 (984)
.+-.-++|.|..|+|||+||.. ..+. +. ..++-+..+++.+++......-+.+.+++-+ .. .++.
T Consensus 187 GRGQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep 266 (574)
T PTZ00185 187 GRGQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEP 266 (574)
T ss_pred cCCCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCC
Confidence 4567789999999999999743 2222 10 0124457888999887543222333333322 11 0110
Q ss_pred ch-----HHHHHHHHHHH--cCCcEEEEEECCCC
Q 001999 238 DN-----AQRADNISKEL--KDKRYVLFLDGVSS 264 (984)
Q Consensus 238 ~~-----~~~~~~l~~~L--~~kr~LlVlDdv~~ 264 (984)
.. --..-.+.+++ +|+.+|+|+||+-.
T Consensus 267 ~~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr 300 (574)
T PTZ00185 267 AGLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSK 300 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCchH
Confidence 00 11122234444 58999999999954
No 483
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=91.49 E-value=1.7 Score=47.30 Aligned_cols=95 Identities=21% Similarity=0.220 Sum_probs=56.6
Q ss_pred HHHHhcc-CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCC-HHHHHHHHHHHh----ccC------
Q 001999 166 LEKHLSS-GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGN-ISDIQEIILERL----KVN------ 233 (984)
Q Consensus 166 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~-~~~i~~~i~~~l----~~~------ 233 (984)
+++.+.. .+-..++|.|..|+|||+|+++..+.. +-+.++++-+.+..+ +.++++++-+.- +..
T Consensus 147 vID~l~Pi~kGqr~~I~G~~G~GKT~L~~~Iak~~----~~dvvVyv~iGERg~Ev~e~l~ef~~l~~~~~~~~~m~rtv 222 (369)
T cd01134 147 VLDTLFPVVKGGTAAIPGPFGCGKTVIQQSLSKYS----NSDIVIYVGCGERGNEMTEVLEEFPELTDPVTGEPLMKRTV 222 (369)
T ss_pred hhhccccccCCCEEEEECCCCCChHHHHHHHHhCC----CCCEEEEEEeCCChHHHHHHHHHHHhhccccccCCccceEE
Confidence 3444443 456789999999999999999855542 335788888877543 455555543211 110
Q ss_pred -----ccccch-----HHHHHHHHHHH--cCCcEEEEEECCCC
Q 001999 234 -----AKELDN-----AQRADNISKEL--KDKRYVLFLDGVSS 264 (984)
Q Consensus 234 -----~~~~~~-----~~~~~~l~~~L--~~kr~LlVlDdv~~ 264 (984)
.+.... -...-.+.+++ +|+.+|+++|++-.
T Consensus 223 lV~nts~~p~~~R~~s~yta~tiAEYfrd~G~dVll~~Ds~tR 265 (369)
T cd01134 223 LIANTSNMPVAAREASIYTGITIAEYFRDMGYNVALMADSTSR 265 (369)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcChhH
Confidence 011100 11122244554 58999999999854
No 484
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.47 E-value=0.12 Score=28.98 Aligned_cols=17 Identities=35% Similarity=0.700 Sum_probs=9.1
Q ss_pred CCcceEeecccccccccC
Q 001999 926 PSLETIKIKACNALKSFP 943 (984)
Q Consensus 926 ~sL~~L~i~~C~~L~~lp 943 (984)
++|+.|++++|+ |+++|
T Consensus 1 ~~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCCC-CCCCc
Confidence 467777777777 66665
No 485
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=91.47 E-value=0.76 Score=51.83 Aligned_cols=91 Identities=15% Similarity=0.141 Sum_probs=55.1
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhccc------------CCCCCeEEEEEeCCCCCHHHHHHHHHHHhc-cCc-----
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSVGE------------SGRFDIIFWVNVNTDGNISDIQEIILERLK-VNA----- 234 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~------------~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~-~~~----- 234 (984)
.+-.-++|+|-.|+|||||+.+.....+. .+. ..++++.+.+.....+.+.+.+..-+ ...
T Consensus 139 g~GQRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~-~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~ 217 (466)
T TIGR01040 139 ARGQKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDN-FAIVFAAMGVNMETARFFKQDFEENGSMERVCLFL 217 (466)
T ss_pred ccCCeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCc-eEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEE
Confidence 45678899999999999999883333210 011 16778888887665555555554433 110
Q ss_pred ---cccch-----HHHHHHHHHHHc---CCcEEEEEECCCC
Q 001999 235 ---KELDN-----AQRADNISKELK---DKRYVLFLDGVSS 264 (984)
Q Consensus 235 ---~~~~~-----~~~~~~l~~~L~---~kr~LlVlDdv~~ 264 (984)
+.... ....-.+.++++ |+++|+++||+-.
T Consensus 218 atsd~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr 258 (466)
T TIGR01040 218 NLANDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMSS 258 (466)
T ss_pred ECCCCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChHH
Confidence 11111 122233555554 6999999999954
No 486
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=91.39 E-value=0.52 Score=47.61 Aligned_cols=28 Identities=29% Similarity=0.494 Sum_probs=23.6
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
+.-.+|+|+|..|.|||||.+.....+.
T Consensus 28 ~~GE~VaiIG~SGaGKSTLLR~lngl~d 55 (258)
T COG3638 28 NQGEMVAIIGPSGAGKSTLLRSLNGLVD 55 (258)
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccC
Confidence 4567999999999999999999666554
No 487
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=91.38 E-value=0.23 Score=47.98 Aligned_cols=36 Identities=22% Similarity=0.317 Sum_probs=25.6
Q ss_pred EEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEe
Q 001999 177 KICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNV 213 (984)
Q Consensus 177 vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~v 213 (984)
|++|+|+.|+|||||+.......+. ..+...+.-+.
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~-~G~~V~viK~~ 36 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKA-RGYRVATIKHD 36 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHh-cCCeEEEEecc
Confidence 6899999999999999996555541 34555444443
No 488
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=91.33 E-value=1 Score=51.33 Aligned_cols=89 Identities=20% Similarity=0.203 Sum_probs=49.0
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHHHHH--h----cc--Cccccch-----
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEIILER--L----KV--NAKELDN----- 239 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~--l----~~--~~~~~~~----- 239 (984)
.+...++|+|..|+|||||++....... . -..++++.--+.-++.++.++.+.. + .. ..+....
T Consensus 156 ~~Gq~i~I~G~sG~GKStLl~~I~~~~~--~-~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~~~~~r~~~ 232 (438)
T PRK07721 156 GKGQRVGIFAGSGVGKSTLMGMIARNTS--A-DLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQPALMRIKG 232 (438)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcccC--C-CeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCCCHHHHHHH
Confidence 5678999999999999999988544433 1 1234443322333455444332211 1 10 0111111
Q ss_pred HHHHHHHHHHH--cCCcEEEEEECCCC
Q 001999 240 AQRADNISKEL--KDKRYVLFLDGVSS 264 (984)
Q Consensus 240 ~~~~~~l~~~L--~~kr~LlVlDdv~~ 264 (984)
....-.+.+++ +|+++||++||+-.
T Consensus 233 ~~~a~~iAEyfr~~g~~Vll~~Dsltr 259 (438)
T PRK07721 233 AYTATAIAEYFRDQGLNVMLMMDSVTR 259 (438)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeChHH
Confidence 22233344555 58999999999854
No 489
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=91.31 E-value=0.16 Score=62.39 Aligned_cols=175 Identities=15% Similarity=0.220 Sum_probs=89.5
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhh--c-------cc-----CCCCCeEEEEEeCCCCCHHHHHHHHHHHhccCccccc
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDS--V-------GE-----SGRFDIIFWVNVNTDGNISDIQEIILERLKVNAKELD 238 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~--~-------~~-----~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~ 238 (984)
...+++.|.|+.+.||||+.+.+.-. . .. -..|+ .++..+++.-++..-+...
T Consensus 325 ~~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~-~i~~~ig~~~si~~~lStf------------ 391 (782)
T PRK00409 325 FDKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFK-EIFADIGDEQSIEQSLSTF------------ 391 (782)
T ss_pred CCceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccc-eEEEecCCccchhhchhHH------------
Confidence 45678999999999999999883211 1 00 01122 2333333322222111110
Q ss_pred hHHHHHHHHHHHc--CCcEEEEEECCCCccchh---hhc---cc-cCCCCcEEEEEcCCccccc---cCC--ceEEccCC
Q 001999 239 NAQRADNISKELK--DKRYVLFLDGVSSEINFK---EIG---IH-DDHGRGKVVFACRSREFCW---QAD--DVIHVERL 304 (984)
Q Consensus 239 ~~~~~~~l~~~L~--~kr~LlVlDdv~~~~~~~---~~~---~~-~~~~gs~ilvTTR~~~v~~---~~~--~~~~l~~L 304 (984)
......+...+. +.+-|+++|..-...+.. .++ +. -...|+.+|+||-...++. ... ....+..
T Consensus 392 -S~~m~~~~~Il~~~~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~~~~~~~v~~~~~~~- 469 (782)
T PRK00409 392 -SGHMTNIVRILEKADKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKALMYNREGVENASVEF- 469 (782)
T ss_pred -HHHHHHHHHHHHhCCcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHHHhcCCCeEEEEEEE-
Confidence 111112222222 478899999987653321 121 11 2235789999999877755 111 1112211
Q ss_pred ChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCCchHHHHHHHHhhcCccHHHHHHHHHHhhc
Q 001999 305 SPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGMPYMLKLIGKELVNQSEVAIWRATVDDLRS 370 (984)
Q Consensus 305 ~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~~~~~l~~~~~~~~w~~~l~~l~~ 370 (984)
+. +......+ .-. ..+. ..-|-+|++++ |+|-.+.--|..+... .....+.+++.+..
T Consensus 470 d~-~~l~~~Yk-l~~---G~~g-~S~a~~iA~~~-Glp~~ii~~A~~~~~~-~~~~~~~li~~l~~ 527 (782)
T PRK00409 470 DE-ETLRPTYR-LLI---GIPG-KSNAFEIAKRL-GLPENIIEEAKKLIGE-DKEKLNELIASLEE 527 (782)
T ss_pred ec-CcCcEEEE-Eee---CCCC-CcHHHHHHHHh-CcCHHHHHHHHHHHhh-hhhHHHHHHHHHHH
Confidence 11 11000000 000 1111 33577888877 8998888888877665 55567777776654
No 490
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=91.30 E-value=0.62 Score=46.60 Aligned_cols=27 Identities=26% Similarity=0.265 Sum_probs=22.8
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhc
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSV 199 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~ 199 (984)
....+|.|.|.+|+||||+|+......
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l 42 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKL 42 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999955554
No 491
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=91.28 E-value=1.8 Score=41.27 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=20.7
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhh
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDS 198 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~ 198 (984)
.-.|++|||.+|.|||||......+
T Consensus 31 PGeVLgiVGESGSGKtTLL~~is~r 55 (258)
T COG4107 31 PGEVLGIVGESGSGKTTLLKCISGR 55 (258)
T ss_pred CCcEEEEEecCCCcHHhHHHHHhcc
Confidence 3469999999999999999884443
No 492
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=91.28 E-value=0.76 Score=54.70 Aligned_cols=23 Identities=30% Similarity=0.470 Sum_probs=21.1
Q ss_pred CCccEEEEEcCCCChHHHHHHHh
Q 001999 173 GGLKKICICGPLGVGKTTIMENS 195 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~ 195 (984)
+....++|+|+.|.|||||++..
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl~lL 381 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLLMLL 381 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHH
Confidence 57789999999999999999983
No 493
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=91.25 E-value=0.15 Score=48.76 Aligned_cols=20 Identities=45% Similarity=0.567 Sum_probs=18.3
Q ss_pred EEEEEcCCCChHHHHHHHhh
Q 001999 177 KICICGPLGVGKTTIMENSH 196 (984)
Q Consensus 177 vi~I~G~gGiGKTtLa~~~~ 196 (984)
.|+|.|.+|+||||+++...
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999855
No 494
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=91.24 E-value=2.6 Score=43.04 Aligned_cols=23 Identities=35% Similarity=0.442 Sum_probs=20.6
Q ss_pred CCccEEEEEcCCCChHHHHHHHh
Q 001999 173 GGLKKICICGPLGVGKTTIMENS 195 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~ 195 (984)
..-.+++|+|..|.|||||++..
T Consensus 32 ~~G~~~~i~G~nGsGKSTLl~~l 54 (207)
T cd03369 32 KAGEKIGIVGRTGAGKSTLILAL 54 (207)
T ss_pred CCCCEEEEECCCCCCHHHHHHHH
Confidence 45679999999999999999993
No 495
>PRK04328 hypothetical protein; Provisional
Probab=91.14 E-value=0.84 Score=48.12 Aligned_cols=40 Identities=13% Similarity=0.155 Sum_probs=30.9
Q ss_pred CCccEEEEEcCCCChHHHHHHH-hhhhcccCCCCCeEEEEEeCC
Q 001999 173 GGLKKICICGPLGVGKTTIMEN-SHDSVGESGRFDIIFWVNVNT 215 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~-~~~~~~~~~~F~~~~wv~vs~ 215 (984)
+.-.++.|.|.+|+|||+||.+ .++.++ . -...+|++...
T Consensus 21 p~gs~ili~G~pGsGKT~l~~~fl~~~~~--~-ge~~lyis~ee 61 (249)
T PRK04328 21 PERNVVLLSGGPGTGKSIFSQQFLWNGLQ--M-GEPGVYVALEE 61 (249)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHHh--c-CCcEEEEEeeC
Confidence 4578999999999999999998 555554 2 34578888766
No 496
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=91.14 E-value=1.8 Score=42.17 Aligned_cols=111 Identities=14% Similarity=0.158 Sum_probs=57.5
Q ss_pred ccEEEEEcCCCChHHHHHHH-hhhhcccCCCCCeEE--EEEeCCCCCHHHHHHHHHHHh-----ccC--c--cccch---
Q 001999 175 LKKICICGPLGVGKTTIMEN-SHDSVGESGRFDIIF--WVNVNTDGNISDIQEIILERL-----KVN--A--KELDN--- 239 (984)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~-~~~~~~~~~~F~~~~--wv~vs~~~~~~~i~~~i~~~l-----~~~--~--~~~~~--- 239 (984)
...|-|++..|.||||.|.. ....+. ..+...+ |+--.........++.. .+ +.. . .....
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~--~g~~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~~ 80 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALG--HGKKVGVIQFIKGAWPNGERAAFEPH--GVEFQVMGTGFTWETQNREADTA 80 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHH--CCCeEEEEEEecCCcccChHHHHHhc--CcEEEECCCCCeecCCCcHHHHH
Confidence 46788899999999999998 333333 3343211 33222122333333332 11 110 0 00011
Q ss_pred --HHHHHHHHHHHcC-CcEEEEEECCCCc-----cchhhh--ccccCCCCcEEEEEcCCc
Q 001999 240 --AQRADNISKELKD-KRYVLFLDGVSSE-----INFKEI--GIHDDHGRGKVVFACRSR 289 (984)
Q Consensus 240 --~~~~~~l~~~L~~-kr~LlVlDdv~~~-----~~~~~~--~~~~~~~gs~ilvTTR~~ 289 (984)
.+.....++.+.. +-=+||||.+-.. .+.+++ .+.....+.-||+|=|+.
T Consensus 81 ~~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 81 IAKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 2223334455544 4559999998532 222222 223455667999999975
No 497
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=91.14 E-value=0.23 Score=54.49 Aligned_cols=47 Identities=19% Similarity=0.200 Sum_probs=40.4
Q ss_pred CCCCCCchHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHhhhh
Q 001999 152 HASKFPSHKEYVETLEKHLSSGGLKKICICGPLGVGKTTIMENSHDS 198 (984)
Q Consensus 152 ~~~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~ 198 (984)
|-+.+||.++.+..|+..+.++.+.-|.|.|..|+||||+|+..++.
T Consensus 15 pf~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~ 61 (350)
T CHL00081 15 PFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDL 61 (350)
T ss_pred CHHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHH
Confidence 45678999999999998888888888889999999999999984443
No 498
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=91.12 E-value=0.42 Score=48.41 Aligned_cols=25 Identities=32% Similarity=0.339 Sum_probs=21.3
Q ss_pred cEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 176 KKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
.+|+|.|+.|+||||+++...+...
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l~ 25 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERLE 25 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3689999999999999999666653
No 499
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=91.10 E-value=0.97 Score=46.81 Aligned_cols=26 Identities=23% Similarity=0.417 Sum_probs=21.6
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhh
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDS 198 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~ 198 (984)
.....++|+|..|+|||||++...--
T Consensus 28 ~~Ge~~~i~G~nGsGKSTL~~~l~GL 53 (235)
T COG1122 28 EKGERVLLIGPNGSGKSTLLKLLNGL 53 (235)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCc
Confidence 45678999999999999999994433
No 500
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=91.09 E-value=0.18 Score=47.76 Aligned_cols=25 Identities=36% Similarity=0.523 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCChHHHHHHHhhhhc
Q 001999 175 LKKICICGPLGVGKTTIMENSHDSV 199 (984)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~~~~~~ 199 (984)
.+++.|+|.+|+||||+.+...+..
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 4799999999999999998855554
Done!