Query 001999
Match_columns 984
No_of_seqs 452 out of 4364
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 08:06:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001999.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001999hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 1.3E-47 4.3E-52 453.1 17.9 306 157-481 131-472 (549)
2 1vt4_I APAF-1 related killer D 100.0 1.1E-38 3.9E-43 377.4 19.4 278 156-473 130-436 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 4.4E-37 1.5E-41 403.3 29.3 309 150-480 120-452 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 1.5E-33 5.3E-38 338.3 26.7 305 151-478 121-450 (591)
5 3vq2_A TLR4, TOLL-like recepto 99.9 3.2E-25 1.1E-29 267.4 28.1 424 497-961 31-532 (606)
6 4eco_A Uncharacterized protein 99.9 7.8E-26 2.7E-30 272.6 14.2 355 534-967 197-604 (636)
7 3t6q_A CD180 antigen; protein- 99.9 9.9E-25 3.4E-29 263.1 23.8 437 497-958 32-531 (606)
8 2z63_A TOLL-like receptor 4, v 99.9 1.1E-24 3.8E-29 260.8 22.0 419 497-963 27-531 (570)
9 3vq2_A TLR4, TOLL-like recepto 99.9 2.5E-24 8.6E-29 259.6 24.5 419 501-960 14-507 (606)
10 3rgz_A Protein brassinosteroid 99.9 9.1E-25 3.1E-29 269.7 20.5 177 496-693 198-379 (768)
11 4ecn_A Leucine-rich repeat pro 99.9 2.6E-25 8.9E-30 272.2 15.1 139 535-696 440-609 (876)
12 3rgz_A Protein brassinosteroid 99.9 1.3E-24 4.6E-29 268.2 19.0 352 497-883 177-549 (768)
13 2z7x_B TOLL-like receptor 1, v 99.9 6.9E-24 2.4E-28 250.6 22.2 415 498-962 21-480 (520)
14 3t6q_A CD180 antigen; protein- 99.9 8.9E-24 3E-28 254.8 23.1 425 501-960 15-486 (606)
15 1o6v_A Internalin A; bacterial 99.9 2.9E-23 9.8E-28 241.3 26.1 351 494-945 42-393 (466)
16 1ziw_A TOLL-like receptor 3; i 99.9 1.4E-23 4.8E-28 256.6 23.9 428 498-965 25-519 (680)
17 1ziw_A TOLL-like receptor 3; i 99.9 6E-23 2E-27 251.0 28.2 203 745-957 383-591 (680)
18 2z81_A CD282 antigen, TOLL-lik 99.9 1.2E-23 3.9E-28 250.6 20.7 411 498-962 26-509 (549)
19 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 8.6E-23 3E-27 243.4 24.6 411 500-962 33-509 (562)
20 3j0a_A TOLL-like receptor 5; m 99.9 2.2E-23 7.7E-28 260.0 20.1 178 496-693 22-215 (844)
21 4fmz_A Internalin; leucine ric 99.9 1.8E-22 6.3E-27 225.2 24.6 306 493-937 39-344 (347)
22 3o6n_A APL1; leucine-rich repe 99.9 6.4E-23 2.2E-27 232.7 20.4 305 517-960 42-349 (390)
23 4ecn_A Leucine-rich repeat pro 99.9 1.4E-23 4.9E-28 256.8 15.2 355 513-937 440-838 (876)
24 2z63_A TOLL-like receptor 4, v 99.9 1.3E-22 4.3E-27 242.9 22.7 406 494-943 48-535 (570)
25 4eco_A Uncharacterized protein 99.9 1.1E-23 3.6E-28 254.1 12.7 353 516-942 202-602 (636)
26 3v47_A TOLL-like receptor 5B a 99.9 1.8E-22 6.1E-27 234.3 22.6 369 503-937 15-406 (455)
27 4fmz_A Internalin; leucine ric 99.9 2.9E-22 9.8E-27 223.6 20.8 308 513-961 37-344 (347)
28 3oja_B Anopheles plasmodium-re 99.9 2.9E-22 1E-26 240.1 20.3 152 517-692 48-202 (597)
29 2id5_A Lingo-1, leucine rich r 99.9 6.7E-22 2.3E-26 230.8 21.8 315 501-937 14-331 (477)
30 1o6v_A Internalin A; bacterial 99.9 9.6E-22 3.3E-26 228.5 21.8 347 517-965 43-390 (466)
31 3j0a_A TOLL-like receptor 5; m 99.9 4.9E-22 1.7E-26 247.9 20.1 172 502-694 8-186 (844)
32 2z81_A CD282 antigen, TOLL-lik 99.9 1E-21 3.4E-26 233.9 21.5 408 494-942 46-513 (549)
33 2z7x_B TOLL-like receptor 1, v 99.9 7.3E-22 2.5E-26 233.3 17.5 397 495-937 42-479 (520)
34 4g8a_A TOLL-like receptor 4; l 99.9 1.3E-20 4.3E-25 228.6 27.6 430 497-960 51-577 (635)
35 2id5_A Lingo-1, leucine rich r 99.9 5.2E-21 1.8E-25 223.3 22.6 315 523-961 14-331 (477)
36 3v47_A TOLL-like receptor 5B a 99.9 1.2E-21 4.1E-26 227.3 16.2 371 523-963 13-408 (455)
37 3bz5_A Internalin-J, INLJ; leu 99.9 5.1E-21 1.7E-25 220.5 20.5 169 493-696 37-205 (457)
38 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 1.3E-20 4.3E-25 224.7 19.6 396 498-937 52-508 (562)
39 3o6n_A APL1; leucine-rich repe 99.8 4E-20 1.4E-24 209.6 21.5 303 496-912 43-350 (390)
40 3bz5_A Internalin-J, INLJ; leu 99.8 2E-20 6.7E-25 215.6 15.8 147 516-696 38-184 (457)
41 3oja_B Anopheles plasmodium-re 99.8 6.9E-20 2.4E-24 219.4 21.1 303 496-912 49-356 (597)
42 4g8a_A TOLL-like receptor 4; l 99.8 1.1E-18 3.8E-23 211.5 28.7 416 508-960 41-552 (635)
43 4fcg_A Uncharacterized protein 99.8 3.1E-19 1.1E-23 196.6 17.5 241 543-969 80-320 (328)
44 1xku_A Decorin; proteoglycan, 99.8 1.4E-18 4.8E-23 192.0 21.4 122 521-659 32-154 (330)
45 1jl5_A Outer protein YOPM; leu 99.8 2.1E-18 7.3E-23 198.4 22.6 113 498-622 91-203 (454)
46 2ft3_A Biglycan; proteoglycan, 99.8 7.9E-19 2.7E-23 194.2 16.5 122 521-659 34-156 (332)
47 1jl5_A Outer protein YOPM; leu 99.8 1.3E-17 4.3E-22 192.0 20.2 330 498-948 71-420 (454)
48 2ft3_A Biglycan; proteoglycan, 99.8 7.5E-18 2.6E-22 186.3 16.5 121 498-622 33-155 (332)
49 1xku_A Decorin; proteoglycan, 99.7 3E-17 1E-21 181.4 20.5 121 498-622 31-153 (330)
50 1z7x_W Ribonuclease inhibitor; 99.7 7.3E-20 2.5E-24 212.7 -0.8 392 520-963 3-440 (461)
51 1ogq_A PGIP-2, polygalacturona 99.7 3.2E-18 1.1E-22 187.3 11.7 127 520-659 50-183 (313)
52 4fcg_A Uncharacterized protein 99.7 3.6E-18 1.2E-22 188.0 12.0 171 498-690 81-261 (328)
53 2z80_A TOLL-like receptor 2, v 99.7 4.1E-18 1.4E-22 190.2 12.4 169 503-692 36-208 (353)
54 3ogk_B Coronatine-insensitive 99.7 6.8E-19 2.3E-23 211.5 3.8 189 743-941 318-527 (592)
55 1ogq_A PGIP-2, polygalacturona 99.7 8.3E-18 2.8E-22 184.0 10.7 128 544-691 50-183 (313)
56 3g06_A SSPH2 (leucine-rich rep 99.7 7.5E-17 2.5E-21 191.2 18.7 256 498-912 40-295 (622)
57 2z80_A TOLL-like receptor 2, v 99.7 6.1E-17 2.1E-21 180.7 15.2 127 517-659 28-158 (353)
58 3g06_A SSPH2 (leucine-rich rep 99.7 2E-16 6.9E-21 187.5 19.5 269 520-950 40-308 (622)
59 3zyi_A Leucine-rich repeat-con 99.7 9.8E-17 3.4E-21 185.4 15.6 148 500-660 56-206 (452)
60 3zyj_A Leucine-rich repeat-con 99.7 1E-16 3.6E-21 184.5 15.4 147 500-659 45-194 (440)
61 3ogk_B Coronatine-insensitive 99.7 1.9E-17 6.5E-22 198.9 9.0 369 499-936 139-548 (592)
62 1z7x_W Ribonuclease inhibitor; 99.7 2.9E-18 9.9E-23 199.1 1.8 384 498-937 3-438 (461)
63 3zyi_A Leucine-rich repeat-con 99.7 2.9E-16 1E-20 181.4 17.6 123 522-659 56-180 (452)
64 2z66_A Variable lymphocyte rec 99.7 6E-17 2E-21 176.9 10.4 119 502-622 11-134 (306)
65 3zyj_A Leucine-rich repeat-con 99.7 1.9E-15 6.3E-20 174.0 20.2 243 522-912 45-290 (440)
66 2p1m_B Transport inhibitor res 99.7 1.1E-16 3.6E-21 192.4 10.0 183 742-938 313-518 (594)
67 1ozn_A Reticulon 4 receptor; N 99.7 6.4E-16 2.2E-20 166.7 15.1 121 501-622 14-137 (285)
68 2p1m_B Transport inhibitor res 99.6 7.6E-17 2.6E-21 193.7 7.2 383 498-936 105-541 (594)
69 3o53_A Protein LRIM1, AGAP0063 99.6 8E-17 2.7E-21 176.7 6.7 96 521-622 11-107 (317)
70 2z66_A Variable lymphocyte rec 99.6 5.2E-16 1.8E-20 169.4 12.9 121 523-659 10-135 (306)
71 3o53_A Protein LRIM1, AGAP0063 99.6 3.9E-16 1.3E-20 171.1 11.1 124 517-660 31-154 (317)
72 1ozn_A Reticulon 4 receptor; N 99.6 2E-15 6.9E-20 162.9 11.1 179 496-694 30-213 (285)
73 1wwl_A Monocyte differentiatio 99.6 9.8E-16 3.3E-20 167.5 5.3 152 519-692 42-211 (312)
74 3oja_A Leucine-rich immune mol 99.6 2.8E-15 9.5E-20 174.2 9.0 148 517-692 31-179 (487)
75 2qen_A Walker-type ATPase; unk 99.6 2.9E-13 1E-17 150.6 24.5 287 152-474 10-349 (350)
76 2ast_B S-phase kinase-associat 99.5 1.2E-14 4.1E-19 160.9 11.9 149 522-690 49-203 (336)
77 1h6u_A Internalin H; cell adhe 99.5 6.3E-14 2.1E-18 152.7 17.3 170 493-692 36-205 (308)
78 1w5s_A Origin recognition comp 99.5 5.2E-14 1.8E-18 160.5 16.6 289 154-457 22-371 (412)
79 2fna_A Conserved hypothetical 99.5 1.1E-12 3.8E-17 146.3 26.1 284 152-473 11-356 (357)
80 2o6q_A Variable lymphocyte rec 99.5 4.4E-14 1.5E-18 150.9 13.5 175 498-693 37-216 (270)
81 3oja_A Leucine-rich immune mol 99.5 9E-15 3.1E-19 169.9 8.7 242 543-940 33-276 (487)
82 2xwt_C Thyrotropin receptor; s 99.5 1.3E-14 4.3E-19 152.1 8.9 136 509-658 22-164 (239)
83 1wwl_A Monocyte differentiatio 99.5 1.4E-14 4.9E-19 158.2 9.4 109 843-963 198-309 (312)
84 2o6q_A Variable lymphocyte rec 99.5 9E-14 3.1E-18 148.5 14.3 172 499-692 17-191 (270)
85 2ast_B S-phase kinase-associat 99.5 2.9E-14 1E-18 157.8 9.8 124 545-690 48-176 (336)
86 3rfs_A Internalin B, repeat mo 99.5 1.1E-13 3.8E-18 147.9 13.5 179 493-694 36-217 (272)
87 2z62_A TOLL-like receptor 4, v 99.5 1.2E-13 4E-18 148.1 13.5 103 520-622 28-132 (276)
88 4ay9_X Follicle-stimulating ho 99.5 1.6E-13 5.3E-18 152.6 14.2 127 792-935 129-255 (350)
89 3m19_A Variable lymphocyte rec 99.5 2E-13 7E-18 144.0 13.1 176 499-696 15-193 (251)
90 1p9a_G Platelet glycoprotein I 99.5 1.4E-13 4.8E-18 148.4 12.1 176 497-695 9-185 (290)
91 2z62_A TOLL-like receptor 4, v 99.5 1.6E-13 5.3E-18 147.2 12.0 143 498-653 28-176 (276)
92 1h6t_A Internalin B; cell adhe 99.5 4.7E-13 1.6E-17 144.4 15.0 174 493-696 41-214 (291)
93 1h6u_A Internalin H; cell adhe 99.4 5.8E-13 2E-17 145.0 14.9 174 493-696 58-231 (308)
94 2ca6_A RAN GTPase-activating p 99.4 7.5E-14 2.5E-18 157.7 7.8 94 528-622 17-130 (386)
95 4ezg_A Putative uncharacterize 99.4 6.6E-13 2.3E-17 134.3 13.7 150 493-659 39-190 (197)
96 3qfl_A MLA10; coiled-coil, (CC 99.4 3E-13 1E-17 121.5 8.8 81 12-100 1-81 (115)
97 3rfs_A Internalin B, repeat mo 99.4 1.3E-12 4.3E-17 139.7 14.3 155 493-660 58-215 (272)
98 1p9a_G Platelet glycoprotein I 99.4 5.6E-13 1.9E-17 143.6 11.0 174 498-695 31-208 (290)
99 3m19_A Variable lymphocyte rec 99.4 2E-12 6.8E-17 136.3 14.5 152 498-662 35-191 (251)
100 4ay9_X Follicle-stimulating ho 99.4 6.2E-13 2.1E-17 147.7 11.1 119 503-622 14-136 (350)
101 2xwt_C Thyrotropin receptor; s 99.4 2.7E-13 9.2E-18 141.9 7.1 173 497-692 30-215 (239)
102 1m9s_A Internalin B; cell inva 99.4 1.4E-12 4.7E-17 154.5 13.8 174 493-696 38-211 (605)
103 3e6j_A Variable lymphocyte rec 99.3 5E-12 1.7E-16 131.0 13.5 146 500-659 21-168 (229)
104 4ezg_A Putative uncharacterize 99.3 3.7E-12 1.3E-16 128.7 12.0 152 517-694 41-193 (197)
105 3goz_A Leucine-rich repeat-con 99.3 4.9E-12 1.7E-16 141.2 13.8 97 526-622 4-117 (362)
106 2qby_B CDC6 homolog 3, cell di 99.3 9.8E-11 3.3E-15 131.9 24.1 281 154-457 20-339 (384)
107 1m9s_A Internalin B; cell inva 99.3 2E-12 6.8E-17 153.1 9.5 166 500-695 23-188 (605)
108 2ca6_A RAN GTPase-activating p 99.3 3.2E-12 1.1E-16 144.2 10.4 163 518-694 30-228 (386)
109 2v9t_B SLIT homolog 2 protein 99.3 7.3E-12 2.5E-16 128.9 12.1 145 501-659 14-161 (220)
110 1xeu_A Internalin C; cellular 99.3 1.9E-12 6.6E-17 137.2 7.8 165 499-694 20-184 (263)
111 2o6s_A Variable lymphocyte rec 99.3 4.3E-12 1.5E-16 129.6 9.8 144 502-659 11-157 (208)
112 2v70_A SLIT-2, SLIT homolog 2 99.3 9.7E-12 3.3E-16 128.0 12.4 145 501-659 14-162 (220)
113 2v1u_A Cell division control p 99.3 1.8E-10 6E-15 130.0 23.3 282 154-457 19-351 (387)
114 1xeu_A Internalin C; cellular 99.3 2.1E-11 7.1E-16 129.2 14.3 147 493-660 36-182 (263)
115 3e6j_A Variable lymphocyte rec 99.3 2E-11 6.7E-16 126.5 13.0 125 497-622 39-167 (229)
116 2je0_A Acidic leucine-rich nuc 99.3 9.8E-12 3.4E-16 119.3 9.8 101 520-622 17-121 (149)
117 1h6t_A Internalin B; cell adhe 99.3 3.6E-11 1.2E-15 129.5 15.0 148 493-660 63-210 (291)
118 2o6s_A Variable lymphocyte rec 99.3 3.1E-11 1E-15 123.2 13.6 125 497-622 27-156 (208)
119 2ell_A Acidic leucine-rich nuc 99.3 1.5E-11 5.2E-16 120.7 10.7 122 498-622 24-155 (168)
120 2ell_A Acidic leucine-rich nuc 99.3 1.3E-11 4.6E-16 121.1 10.1 130 519-662 23-159 (168)
121 1fnn_A CDC6P, cell division co 99.3 1.7E-09 5.9E-14 121.9 28.7 305 154-479 17-386 (389)
122 2je0_A Acidic leucine-rich nuc 99.2 1.4E-11 4.8E-16 118.3 9.2 123 497-622 16-148 (149)
123 3goz_A Leucine-rich repeat-con 99.2 6.4E-12 2.2E-16 140.3 7.6 177 505-693 5-207 (362)
124 2v70_A SLIT-2, SLIT homolog 2 99.2 2.1E-11 7.1E-16 125.5 10.2 125 498-622 32-161 (220)
125 2v9t_B SLIT homolog 2 protein 99.2 2.7E-11 9.4E-16 124.5 11.1 124 498-622 32-160 (220)
126 2xot_A Amphoterin-induced prot 99.2 2.2E-11 7.6E-16 135.7 11.2 145 502-660 22-173 (361)
127 2xot_A Amphoterin-induced prot 99.2 1.9E-11 6.5E-16 136.2 10.2 151 497-659 38-198 (361)
128 1a9n_A U2A', U2A'; complex (nu 99.2 1.9E-11 6.4E-16 121.1 8.3 128 517-660 16-150 (176)
129 4glp_A Monocyte differentiatio 99.2 2.4E-11 8.3E-16 132.4 9.8 101 520-622 64-177 (310)
130 2qby_A CDC6 homolog 1, cell di 99.2 2.9E-10 1E-14 128.0 18.1 284 153-457 19-348 (386)
131 1a9n_A U2A', U2A'; complex (nu 99.2 5E-11 1.7E-15 118.0 9.2 124 496-622 17-148 (176)
132 4glp_A Monocyte differentiatio 99.1 2.1E-11 7.1E-16 132.9 5.7 103 519-622 144-259 (310)
133 2wfh_A SLIT homolog 2 protein 99.1 2.9E-10 9.8E-15 114.2 12.9 119 501-622 13-134 (193)
134 3cvr_A Invasion plasmid antige 99.1 2.3E-10 7.9E-15 133.8 12.7 132 499-661 60-191 (571)
135 3cvr_A Invasion plasmid antige 99.1 2.5E-10 8.4E-15 133.6 12.2 160 498-696 80-244 (571)
136 1dce_A Protein (RAB geranylger 99.1 2E-10 6.7E-15 135.2 11.4 97 522-622 443-541 (567)
137 1w8a_A SLIT protein; signaling 99.1 2.9E-10 9.9E-15 114.1 10.9 120 501-622 11-134 (192)
138 2wfh_A SLIT homolog 2 protein 99.1 3.7E-10 1.3E-14 113.4 11.0 121 523-659 13-135 (193)
139 1njg_A DNA polymerase III subu 99.1 2.5E-09 8.5E-14 111.9 17.8 191 153-352 22-231 (250)
140 4b8c_D Glucose-repressible alc 99.1 1.9E-10 6.6E-15 139.7 10.0 151 498-663 173-329 (727)
141 2o6r_A Variable lymphocyte rec 99.1 7.4E-10 2.5E-14 109.6 12.3 121 500-622 9-132 (177)
142 1dce_A Protein (RAB geranylger 99.0 5.5E-10 1.9E-14 131.4 12.5 120 499-621 442-567 (567)
143 1w8a_A SLIT protein; signaling 99.0 4.6E-10 1.6E-14 112.6 9.5 123 523-660 11-136 (192)
144 2chg_A Replication factor C sm 99.0 4.8E-09 1.6E-13 108.0 17.4 182 153-351 16-206 (226)
145 4b8c_D Glucose-repressible alc 99.0 3.4E-10 1.2E-14 137.5 9.5 105 516-622 220-324 (727)
146 1ds9_A Outer arm dynein; leuci 99.0 6.8E-11 2.3E-15 119.5 2.4 141 532-688 37-180 (198)
147 1ds9_A Outer arm dynein; leuci 99.0 3.7E-11 1.3E-15 121.4 -1.2 133 516-658 44-182 (198)
148 1hqc_A RUVB; extended AAA-ATPa 98.9 2.4E-08 8.3E-13 109.3 18.7 266 152-456 10-324 (324)
149 2r9u_A Variable lymphocyte rec 98.9 3.3E-09 1.1E-13 104.4 10.2 96 523-622 15-113 (174)
150 2o6r_A Variable lymphocyte rec 98.9 5.6E-09 1.9E-13 103.2 11.1 124 522-661 9-135 (177)
151 3g39_A Variable lymphocyte rec 98.8 9.6E-09 3.3E-13 100.6 10.2 96 523-622 12-110 (170)
152 3sb4_A Hypothetical leucine ri 98.8 4.6E-09 1.6E-13 115.3 8.4 102 790-907 225-327 (329)
153 2r9u_A Variable lymphocyte rec 98.8 8.2E-09 2.8E-13 101.5 9.3 111 501-613 15-127 (174)
154 3g39_A Variable lymphocyte rec 98.8 1.3E-08 4.4E-13 99.7 9.3 106 500-607 11-118 (170)
155 1sxj_B Activator 1 37 kDa subu 98.8 5.1E-08 1.7E-12 106.6 14.7 180 153-349 20-210 (323)
156 1iqp_A RFCS; clamp loader, ext 98.6 3.2E-07 1.1E-11 100.4 16.0 178 153-353 24-216 (327)
157 4fdw_A Leucine rich hypothetic 98.6 6.4E-07 2.2E-11 100.5 17.2 119 520-657 113-233 (401)
158 3sb4_A Hypothetical leucine ri 98.6 7.9E-08 2.7E-12 105.4 9.5 287 496-852 23-327 (329)
159 4fs7_A Uncharacterized protein 98.6 9.5E-07 3.2E-11 99.4 17.3 146 787-956 249-394 (394)
160 2ifg_A High affinity nerve gro 98.4 2.9E-07 9.9E-12 101.7 8.8 94 526-622 14-111 (347)
161 3un9_A NLR family member X1; l 98.4 9.3E-08 3.2E-12 106.2 4.2 124 498-622 72-219 (372)
162 3te6_A Regulatory protein SIR3 98.4 6.1E-06 2.1E-10 88.1 17.8 162 156-318 22-212 (318)
163 2ifg_A High affinity nerve gro 98.4 3.7E-07 1.3E-11 100.8 8.8 104 502-606 12-118 (347)
164 2chq_A Replication factor C sm 98.4 2.4E-06 8.3E-11 92.9 14.1 178 153-350 16-205 (319)
165 4fdw_A Leucine rich hypothetic 98.4 1.7E-06 6E-11 96.9 12.7 246 516-856 132-380 (401)
166 1jr3_A DNA polymerase III subu 98.3 6.8E-06 2.3E-10 91.6 17.0 189 153-350 15-222 (373)
167 1jbk_A CLPB protein; beta barr 98.3 1.8E-06 6.1E-11 86.1 10.3 148 153-313 21-194 (195)
168 4fs7_A Uncharacterized protein 98.3 4.9E-06 1.7E-10 93.5 14.7 60 515-576 66-126 (394)
169 3e4g_A ATP synthase subunit S, 98.2 1.8E-07 6.2E-12 90.2 0.5 91 819-917 61-155 (176)
170 3pvs_A Replication-associated 98.2 3.5E-05 1.2E-09 87.1 18.8 175 151-350 23-216 (447)
171 3pfi_A Holliday junction ATP-d 98.2 0.00012 3.9E-09 80.3 22.4 169 152-349 27-227 (338)
172 1sxj_A Activator 1 95 kDa subu 98.2 8E-06 2.7E-10 94.8 13.4 184 153-348 38-252 (516)
173 3un9_A NLR family member X1; l 98.2 3.2E-07 1.1E-11 101.9 1.1 162 520-695 72-252 (372)
174 3e4g_A ATP synthase subunit S, 98.1 1.1E-06 3.8E-11 84.7 4.0 89 792-885 62-152 (176)
175 3h4m_A Proteasome-activating n 98.1 5.5E-05 1.9E-09 80.7 17.5 172 153-347 16-229 (285)
176 1sxj_E Activator 1 40 kDa subu 98.1 3.1E-05 1E-09 85.6 14.6 192 152-350 12-238 (354)
177 1sxj_D Activator 1 41 kDa subu 98.1 2.4E-05 8.3E-10 86.3 13.5 191 153-350 36-236 (353)
178 2qz4_A Paraplegin; AAA+, SPG7, 98.0 0.00019 6.6E-09 75.2 19.7 177 153-349 5-222 (262)
179 3bos_A Putative DNA replicatio 98.0 1.2E-05 4E-10 83.5 10.1 169 154-350 28-218 (242)
180 2z4s_A Chromosomal replication 98.0 1.5E-05 5.2E-10 90.2 11.8 196 154-368 105-332 (440)
181 3b9p_A CG5977-PA, isoform A; A 98.0 0.0003 1E-08 75.3 20.8 176 153-349 20-233 (297)
182 3eie_A Vacuolar protein sortin 98.0 0.00021 7.2E-09 77.5 19.0 175 153-349 17-228 (322)
183 1xwi_A SKD1 protein; VPS4B, AA 98.0 0.00027 9.4E-09 76.4 19.7 177 153-350 11-224 (322)
184 3d8b_A Fidgetin-like protein 1 98.0 0.00023 8E-09 78.3 19.5 176 153-350 83-296 (357)
185 1d2n_A N-ethylmaleimide-sensit 98.0 0.00015 5E-09 76.7 16.9 163 154-341 33-229 (272)
186 2ra8_A Uncharacterized protein 97.9 1.8E-05 6.2E-10 86.9 8.9 139 539-694 167-319 (362)
187 3u61_B DNA polymerase accessor 97.9 0.00015 5.1E-09 78.8 16.0 178 152-352 24-219 (324)
188 3uk6_A RUVB-like 2; hexameric 97.9 0.00023 8E-09 78.9 17.9 192 153-349 43-303 (368)
189 4gt6_A Cell surface protein; l 97.9 0.00016 5.5E-09 81.0 16.5 103 516-622 59-168 (394)
190 3vfd_A Spastin; ATPase, microt 97.8 0.00059 2E-08 76.1 19.9 174 153-348 114-325 (389)
191 2qp9_X Vacuolar protein sortin 97.8 0.00049 1.7E-08 75.5 18.7 175 153-349 50-261 (355)
192 2p65_A Hypothetical protein PF 97.8 3.4E-05 1.2E-09 76.2 8.5 47 153-199 21-67 (187)
193 1sxj_C Activator 1 40 kDa subu 97.8 0.0002 6.9E-09 78.3 14.8 176 153-345 24-208 (340)
194 3syl_A Protein CBBX; photosynt 97.8 0.00014 4.7E-09 78.5 12.8 150 155-319 32-219 (309)
195 2zan_A Vacuolar protein sortin 97.7 0.00078 2.7E-08 76.3 18.6 177 153-349 133-345 (444)
196 1l8q_A Chromosomal replication 97.7 0.00026 8.8E-09 76.9 13.9 170 154-344 11-203 (324)
197 3cf0_A Transitional endoplasmi 97.7 0.00077 2.6E-08 72.2 16.2 169 153-344 14-223 (301)
198 1a5t_A Delta prime, HOLB; zinc 97.6 0.00077 2.6E-08 73.3 16.5 166 159-348 7-204 (334)
199 2ra8_A Uncharacterized protein 97.6 5E-05 1.7E-09 83.4 6.5 135 517-662 169-319 (362)
200 3ec2_A DNA replication protein 97.6 7.5E-05 2.6E-09 73.4 6.6 114 159-288 19-142 (180)
201 3pxg_A Negative regulator of g 97.6 0.00035 1.2E-08 79.8 13.1 147 153-319 179-340 (468)
202 4b4t_J 26S protease regulatory 97.5 0.0025 8.5E-08 69.7 18.3 165 154-342 148-354 (405)
203 4h09_A Hypothetical leucine ri 97.5 0.00061 2.1E-08 75.8 13.5 81 515-600 41-122 (379)
204 4b4t_H 26S protease regulatory 97.5 0.0031 1.1E-07 69.9 17.9 165 154-342 209-415 (467)
205 1io0_A Tropomodulin; LRR prote 97.4 0.0001 3.5E-09 72.7 5.1 35 587-621 89-128 (185)
206 1qvr_A CLPB protein; coiled co 97.4 0.00032 1.1E-08 86.6 10.7 152 153-317 169-345 (854)
207 2w58_A DNAI, primosome compone 97.4 0.0002 6.9E-09 71.8 7.2 118 154-288 25-158 (202)
208 4gt6_A Cell surface protein; l 97.4 0.00058 2E-08 76.4 11.8 316 499-910 65-387 (394)
209 3rw6_A Nuclear RNA export fact 97.4 0.00021 7.3E-09 74.2 7.3 80 541-622 167-259 (267)
210 4b4t_L 26S protease subunit RP 97.4 0.0027 9.3E-08 70.6 16.1 165 154-342 181-387 (437)
211 1in4_A RUVB, holliday junction 97.3 0.0084 2.9E-07 65.0 19.6 169 152-349 23-223 (334)
212 4b4t_K 26S protease regulatory 97.3 0.0016 5.5E-08 72.3 13.8 163 154-341 172-378 (428)
213 1lv7_A FTSH; alpha/beta domain 97.3 0.0034 1.2E-07 65.4 15.6 171 153-346 11-222 (257)
214 4b4t_M 26S protease regulatory 97.3 0.0022 7.7E-08 71.2 14.4 164 154-341 181-386 (434)
215 3pxi_A Negative regulator of g 97.3 0.0024 8.1E-08 77.9 15.7 148 153-319 179-340 (758)
216 4b4t_I 26S protease regulatory 97.3 0.0039 1.3E-07 68.4 15.6 164 154-341 182-387 (437)
217 3rw6_A Nuclear RNA export fact 97.2 0.00041 1.4E-08 72.1 7.1 82 564-658 167-259 (267)
218 3hu3_A Transitional endoplasmi 97.2 0.0034 1.2E-07 71.6 14.8 165 154-341 204-406 (489)
219 3n70_A Transport activator; si 97.1 0.00068 2.3E-08 63.7 7.0 45 155-199 2-48 (145)
220 1r6b_X CLPA protein; AAA+, N-t 97.1 0.0032 1.1E-07 76.9 14.4 152 153-317 185-362 (758)
221 1ofh_A ATP-dependent HSL prote 97.1 0.0054 1.8E-07 65.8 14.3 47 154-200 15-75 (310)
222 1io0_A Tropomodulin; LRR prote 97.0 0.00061 2.1E-08 67.1 6.1 98 585-695 59-164 (185)
223 2gno_A DNA polymerase III, gam 97.0 0.0048 1.6E-07 65.8 13.1 142 158-317 1-152 (305)
224 2ce7_A Cell division protein F 97.0 0.012 4.1E-07 66.5 16.7 166 154-342 16-221 (476)
225 3co5_A Putative two-component 96.8 0.0013 4.5E-08 61.6 5.8 44 155-198 5-50 (143)
226 4fcw_A Chaperone protein CLPB; 96.8 0.003 1E-07 67.9 9.5 59 155-215 18-85 (311)
227 2r62_A Cell division protease 96.7 0.0016 5.3E-08 68.5 6.3 148 153-319 10-198 (268)
228 2x8a_A Nuclear valosin-contain 96.7 0.031 1.1E-06 58.5 15.7 146 153-318 9-192 (274)
229 2c9o_A RUVB-like 1; hexameric 96.6 0.016 5.5E-07 65.8 13.7 55 294-350 356-411 (456)
230 2kjq_A DNAA-related protein; s 96.5 0.0016 5.4E-08 61.4 4.2 40 174-215 35-74 (149)
231 3cf2_A TER ATPase, transitiona 96.5 0.018 6.2E-07 68.9 14.1 165 154-342 204-407 (806)
232 1ixz_A ATP-dependent metallopr 96.3 0.07 2.4E-06 55.1 15.7 164 154-341 16-220 (254)
233 3t15_A Ribulose bisphosphate c 96.2 0.094 3.2E-06 55.4 16.5 27 174-200 35-61 (293)
234 1iy2_A ATP-dependent metallopr 96.2 0.081 2.8E-06 55.5 15.6 166 153-342 39-245 (278)
235 1ojl_A Transcriptional regulat 96.1 0.0091 3.1E-07 63.7 7.8 46 154-199 2-49 (304)
236 1ypw_A Transitional endoplasmi 96.1 0.025 8.5E-07 68.9 12.3 147 154-319 204-387 (806)
237 3pxi_A Negative regulator of g 96.0 0.0087 3E-07 72.9 7.6 143 154-316 491-674 (758)
238 2dhr_A FTSH; AAA+ protein, hex 95.8 0.096 3.3E-06 59.5 14.6 163 153-342 30-236 (499)
239 3m6a_A ATP-dependent protease 95.7 0.037 1.3E-06 64.1 11.3 47 154-200 81-133 (543)
240 2cvh_A DNA repair and recombin 95.7 0.034 1.2E-06 56.0 9.8 86 173-264 18-116 (220)
241 2vhj_A Ntpase P4, P4; non- hyd 95.5 0.0066 2.3E-07 64.0 3.6 70 174-264 122-193 (331)
242 3hr8_A Protein RECA; alpha and 95.4 0.038 1.3E-06 59.7 9.0 85 174-265 60-151 (356)
243 1n0w_A DNA repair protein RAD5 95.2 0.083 2.8E-06 54.0 10.9 90 174-264 23-130 (243)
244 2z43_A DNA repair and recombin 95.2 0.071 2.4E-06 57.4 10.6 90 174-264 106-214 (324)
245 1v5w_A DMC1, meiotic recombina 95.0 0.11 3.7E-06 56.3 11.2 91 173-264 120-230 (343)
246 1rz3_A Hypothetical protein rb 94.8 0.024 8.2E-07 56.3 5.0 42 158-199 2-46 (201)
247 3ice_A Transcription terminati 94.6 0.038 1.3E-06 59.4 6.3 96 165-264 163-272 (422)
248 2ck3_D ATP synthase subunit be 94.6 0.12 4.3E-06 57.2 10.4 98 165-264 142-264 (482)
249 2w0m_A SSO2452; RECA, SSPF, un 94.6 0.071 2.4E-06 54.1 8.1 111 174-289 22-168 (235)
250 1jr3_D DNA polymerase III, del 94.4 0.43 1.5E-05 51.6 14.5 160 167-348 10-184 (343)
251 3io5_A Recombination and repai 94.4 0.12 4.2E-06 54.2 9.2 82 177-265 30-123 (333)
252 2bjv_A PSP operon transcriptio 94.3 0.04 1.4E-06 57.4 5.6 60 154-215 6-67 (265)
253 1r6b_X CLPA protein; AAA+, N-t 94.2 0.097 3.3E-06 63.7 9.6 47 154-200 458-513 (758)
254 2zr9_A Protein RECA, recombina 94.2 0.11 3.8E-06 56.3 9.0 84 174-264 60-150 (349)
255 4h09_A Hypothetical leucine ri 94.2 0.1 3.6E-06 57.5 9.0 124 517-657 214-340 (379)
256 1u94_A RECA protein, recombina 94.2 0.11 3.9E-06 56.3 8.9 83 174-263 62-151 (356)
257 2i1q_A DNA repair and recombin 94.2 0.12 4.2E-06 55.4 9.3 89 174-263 97-214 (322)
258 1fx0_B ATP synthase beta chain 94.1 0.15 5.2E-06 56.8 9.7 97 166-264 155-277 (498)
259 2qgz_A Helicase loader, putati 94.1 0.05 1.7E-06 58.0 5.8 40 159-198 133-175 (308)
260 4a74_A DNA repair and recombin 94.0 0.23 7.7E-06 50.2 10.5 56 174-230 24-83 (231)
261 1vpl_A ABC transporter, ATP-bi 94.0 0.34 1.2E-05 49.8 11.7 24 173-196 39-62 (256)
262 1qvr_A CLPB protein; coiled co 94.0 0.052 1.8E-06 66.9 6.5 45 155-199 559-612 (854)
263 1g5t_A COB(I)alamin adenosyltr 94.0 0.11 3.7E-06 50.6 7.3 112 176-290 29-164 (196)
264 3kl4_A SRP54, signal recogniti 93.9 0.81 2.8E-05 50.7 15.3 26 174-199 96-121 (433)
265 3c8u_A Fructokinase; YP_612366 93.9 0.042 1.4E-06 54.9 4.6 39 161-199 6-46 (208)
266 1xp8_A RECA protein, recombina 93.9 0.15 5.1E-06 55.5 9.3 84 174-264 73-163 (366)
267 2px0_A Flagellar biosynthesis 93.9 0.13 4.3E-06 54.4 8.5 26 174-199 104-129 (296)
268 1sky_E F1-ATPase, F1-ATP synth 93.9 0.15 5.1E-06 56.8 9.2 97 167-264 142-256 (473)
269 1vma_A Cell division protein F 93.9 0.31 1.1E-05 51.5 11.3 87 174-263 103-196 (306)
270 2pze_A Cystic fibrosis transme 93.8 0.54 1.9E-05 47.4 12.7 27 173-199 32-58 (229)
271 1qhx_A CPT, protein (chloramph 93.6 0.034 1.2E-06 53.9 3.3 25 176-200 4-28 (178)
272 3fwy_A Light-independent proto 93.5 0.031 1.1E-06 59.6 2.9 22 173-194 46-67 (314)
273 3dm5_A SRP54, signal recogniti 93.5 0.34 1.2E-05 53.7 11.3 26 174-199 99-124 (443)
274 1ukz_A Uridylate kinase; trans 93.5 0.18 6.1E-06 49.9 8.4 26 174-199 14-39 (203)
275 2rhm_A Putative kinase; P-loop 93.4 0.12 4.2E-06 50.5 6.9 26 175-200 5-30 (193)
276 3lw7_A Adenylate kinase relate 93.3 0.037 1.3E-06 53.3 2.9 23 176-199 2-24 (179)
277 1pzn_A RAD51, DNA repair and r 93.3 0.24 8.2E-06 53.7 9.6 92 173-265 129-243 (349)
278 3kb2_A SPBC2 prophage-derived 93.3 0.042 1.4E-06 52.8 3.2 25 176-200 2-26 (173)
279 3vaa_A Shikimate kinase, SK; s 93.2 0.046 1.6E-06 54.1 3.4 27 174-200 24-50 (199)
280 3lda_A DNA repair protein RAD5 93.2 0.3 1E-05 53.7 10.2 90 173-263 176-283 (400)
281 2ffh_A Protein (FFH); SRP54, s 93.1 0.26 8.8E-06 54.6 9.4 27 174-200 97-123 (425)
282 3e70_C DPA, signal recognition 92.9 0.62 2.1E-05 49.7 11.9 27 173-199 127-153 (328)
283 3cf2_A TER ATPase, transitiona 92.8 0.47 1.6E-05 56.8 11.9 92 153-264 476-581 (806)
284 3trf_A Shikimate kinase, SK; a 92.8 0.053 1.8E-06 52.8 3.2 26 175-200 5-30 (185)
285 1kgd_A CASK, peripheral plasma 92.8 0.052 1.8E-06 52.8 3.0 24 175-198 5-28 (180)
286 4akg_A Glutathione S-transfera 92.7 1.2 4.2E-05 60.5 16.9 88 166-263 1259-1346(2695)
287 2r44_A Uncharacterized protein 92.7 0.074 2.5E-06 57.5 4.5 147 154-319 27-200 (331)
288 3umf_A Adenylate kinase; rossm 92.7 0.28 9.4E-06 49.0 8.2 28 173-200 27-54 (217)
289 3hjn_A DTMP kinase, thymidylat 92.7 0.26 9E-06 48.4 8.0 24 177-200 2-25 (197)
290 2b8t_A Thymidine kinase; deoxy 92.6 0.033 1.1E-06 55.9 1.4 110 174-290 11-127 (223)
291 1zp6_A Hypothetical protein AT 92.6 0.059 2E-06 52.8 3.2 25 174-198 8-32 (191)
292 2xxa_A Signal recognition part 92.5 0.7 2.4E-05 51.4 12.1 26 174-199 99-124 (433)
293 1kag_A SKI, shikimate kinase I 92.5 0.058 2E-06 51.9 2.9 25 176-200 5-29 (173)
294 3hws_A ATP-dependent CLP prote 92.5 0.11 3.7E-06 57.0 5.4 45 156-200 17-76 (363)
295 2hf9_A Probable hydrogenase ni 92.4 0.095 3.2E-06 52.9 4.6 37 161-197 24-60 (226)
296 3tui_C Methionine import ATP-b 92.4 0.56 1.9E-05 50.6 10.7 54 240-293 168-228 (366)
297 3vr4_D V-type sodium ATPase su 92.4 0.21 7.1E-06 55.1 7.4 97 166-264 141-259 (465)
298 4gp7_A Metallophosphoesterase; 92.3 0.067 2.3E-06 51.5 3.1 21 174-194 8-28 (171)
299 3uie_A Adenylyl-sulfate kinase 92.3 0.074 2.5E-06 52.6 3.5 27 173-199 23-49 (200)
300 3rfe_A Platelet glycoprotein I 92.2 0.18 6.3E-06 45.7 5.7 33 545-577 32-65 (130)
301 1um8_A ATP-dependent CLP prote 92.1 0.13 4.5E-06 56.6 5.6 46 155-200 22-97 (376)
302 2ga8_A Hypothetical 39.9 kDa p 92.1 0.14 4.8E-06 54.8 5.5 43 157-199 2-48 (359)
303 2z0h_A DTMP kinase, thymidylat 92.0 0.33 1.1E-05 47.5 8.0 23 177-199 2-24 (197)
304 1odf_A YGR205W, hypothetical 3 92.0 0.11 3.9E-06 54.5 4.6 27 173-199 29-55 (290)
305 2wsm_A Hydrogenase expression/ 92.0 0.086 3E-06 53.0 3.6 41 158-198 13-53 (221)
306 1ly1_A Polynucleotide kinase; 92.0 0.073 2.5E-06 51.5 3.0 22 176-197 3-24 (181)
307 3nbx_X ATPase RAVA; AAA+ ATPas 91.9 0.14 4.9E-06 58.1 5.6 44 155-200 23-66 (500)
308 1ex7_A Guanylate kinase; subst 91.8 0.06 2E-06 52.4 2.1 24 176-199 2-25 (186)
309 2yhs_A FTSY, cell division pro 91.8 0.69 2.4E-05 51.8 10.9 42 174-218 292-333 (503)
310 3tr0_A Guanylate kinase, GMP k 91.8 0.086 2.9E-06 52.3 3.4 25 174-198 6-30 (205)
311 4eun_A Thermoresistant glucoki 91.8 0.084 2.9E-06 52.2 3.2 27 173-199 27-53 (200)
312 3tau_A Guanylate kinase, GMP k 91.8 0.11 3.9E-06 51.7 4.1 28 173-200 6-33 (208)
313 3t61_A Gluconokinase; PSI-biol 91.7 0.074 2.5E-06 52.7 2.7 26 175-200 18-43 (202)
314 3rfe_A Platelet glycoprotein I 91.7 0.2 6.9E-06 45.5 5.3 34 522-555 33-66 (130)
315 3iij_A Coilin-interacting nucl 91.6 0.089 3E-06 51.0 3.1 26 175-200 11-36 (180)
316 1xjc_A MOBB protein homolog; s 91.6 0.15 5E-06 48.6 4.5 26 174-199 3-28 (169)
317 1nks_A Adenylate kinase; therm 91.6 0.086 2.9E-06 51.6 3.0 25 176-200 2-26 (194)
318 1zuh_A Shikimate kinase; alpha 91.5 0.096 3.3E-06 50.1 3.2 27 174-200 6-32 (168)
319 3a00_A Guanylate kinase, GMP k 91.5 0.076 2.6E-06 51.8 2.5 24 176-199 2-25 (186)
320 2jaq_A Deoxyguanosine kinase; 91.5 0.097 3.3E-06 51.8 3.3 24 177-200 2-25 (205)
321 1kht_A Adenylate kinase; phosp 91.4 0.095 3.3E-06 51.2 3.2 25 176-200 4-28 (192)
322 3bh0_A DNAB-like replicative h 91.4 1 3.4E-05 48.0 11.4 52 173-229 66-118 (315)
323 2qor_A Guanylate kinase; phosp 91.3 0.1 3.4E-06 51.9 3.2 26 174-199 11-36 (204)
324 1j8m_F SRP54, signal recogniti 91.3 0.94 3.2E-05 47.6 10.9 25 175-199 98-122 (297)
325 2plr_A DTMP kinase, probable t 91.3 0.24 8.1E-06 49.2 6.0 26 175-200 4-29 (213)
326 1via_A Shikimate kinase; struc 91.3 0.092 3.1E-06 50.6 2.8 25 176-200 5-29 (175)
327 1knq_A Gluconate kinase; ALFA/ 91.3 0.096 3.3E-06 50.4 3.0 25 175-199 8-32 (175)
328 2j41_A Guanylate kinase; GMP, 91.3 0.11 3.7E-06 51.6 3.4 26 174-199 5-30 (207)
329 3asz_A Uridine kinase; cytidin 91.2 0.1 3.4E-06 52.1 3.1 26 174-199 5-30 (211)
330 1lvg_A Guanylate kinase, GMP k 91.2 0.085 2.9E-06 52.1 2.5 23 175-197 4-26 (198)
331 2bdt_A BH3686; alpha-beta prot 91.2 0.099 3.4E-06 51.1 3.0 22 176-197 3-24 (189)
332 1y63_A LMAJ004144AAA protein; 91.2 0.12 4.2E-06 50.2 3.6 25 174-198 9-33 (184)
333 3jvv_A Twitching mobility prot 91.2 0.051 1.8E-06 59.0 0.9 111 173-290 121-232 (356)
334 2r9v_A ATP synthase subunit al 91.1 0.33 1.1E-05 54.2 7.3 95 166-264 165-278 (515)
335 2iyv_A Shikimate kinase, SK; t 91.1 0.095 3.2E-06 51.0 2.7 25 176-200 3-27 (184)
336 1g8p_A Magnesium-chelatase 38 91.0 0.1 3.5E-06 56.8 3.2 47 153-199 23-69 (350)
337 2qe7_A ATP synthase subunit al 91.0 0.34 1.2E-05 54.1 7.3 95 166-264 152-265 (502)
338 3l0o_A Transcription terminati 91.0 0.6 2.1E-05 50.2 8.8 51 165-216 164-216 (427)
339 2yvu_A Probable adenylyl-sulfa 91.0 0.13 4.5E-06 50.1 3.6 27 174-200 12-38 (186)
340 2c95_A Adenylate kinase 1; tra 90.9 0.13 4.3E-06 50.6 3.5 27 174-200 8-34 (196)
341 3sr0_A Adenylate kinase; phosp 90.9 0.22 7.5E-06 49.3 5.2 24 177-200 2-25 (206)
342 1g41_A Heat shock protein HSLU 90.9 0.15 5.1E-06 56.7 4.4 47 154-200 15-75 (444)
343 2qt1_A Nicotinamide riboside k 90.9 0.12 4E-06 51.5 3.2 25 174-198 20-44 (207)
344 2ze6_A Isopentenyl transferase 90.9 0.12 4E-06 53.4 3.3 25 176-200 2-26 (253)
345 2orw_A Thymidine kinase; TMTK, 90.9 0.019 6.6E-07 56.0 -2.6 19 176-194 4-22 (184)
346 1e6c_A Shikimate kinase; phosp 90.8 0.11 3.7E-06 49.9 2.8 25 176-200 3-27 (173)
347 1uf9_A TT1252 protein; P-loop, 90.7 0.13 4.6E-06 50.7 3.5 26 173-198 6-31 (203)
348 1gvn_B Zeta; postsegregational 90.7 0.19 6.5E-06 52.8 4.8 26 174-199 32-57 (287)
349 1ye8_A Protein THEP1, hypothet 90.7 0.12 4.1E-06 50.0 3.0 20 177-196 2-21 (178)
350 1ls1_A Signal recognition part 90.7 0.63 2.2E-05 49.0 8.8 26 174-199 97-122 (295)
351 1cke_A CK, MSSA, protein (cyti 90.6 0.12 4E-06 52.3 3.0 25 175-199 5-29 (227)
352 2if2_A Dephospho-COA kinase; a 90.6 0.11 3.9E-06 51.4 2.8 22 176-197 2-23 (204)
353 4e22_A Cytidylate kinase; P-lo 90.6 0.15 5.1E-06 52.6 3.7 27 174-200 26-52 (252)
354 3ney_A 55 kDa erythrocyte memb 90.6 0.13 4.6E-06 50.3 3.2 25 174-198 18-42 (197)
355 2vli_A Antibiotic resistance p 90.6 0.1 3.6E-06 50.6 2.4 26 175-200 5-30 (183)
356 1uj2_A Uridine-cytidine kinase 90.5 0.14 5E-06 52.6 3.6 27 173-199 20-46 (252)
357 1znw_A Guanylate kinase, GMP k 90.5 0.13 4.6E-06 51.1 3.2 27 173-199 18-44 (207)
358 2bwj_A Adenylate kinase 5; pho 90.5 0.13 4.5E-06 50.6 3.1 26 175-200 12-37 (199)
359 1tev_A UMP-CMP kinase; ploop, 90.5 0.14 4.8E-06 50.1 3.4 25 175-199 3-27 (196)
360 1z6g_A Guanylate kinase; struc 90.4 0.12 4.1E-06 51.9 2.8 25 173-197 21-45 (218)
361 1jjv_A Dephospho-COA kinase; P 90.4 0.13 4.3E-06 51.2 3.0 22 176-197 3-24 (206)
362 2bbw_A Adenylate kinase 4, AK4 90.4 0.13 4.6E-06 52.7 3.2 26 174-199 26-51 (246)
363 3cm0_A Adenylate kinase; ATP-b 90.3 0.14 4.9E-06 49.7 3.2 26 175-200 4-29 (186)
364 4edh_A DTMP kinase, thymidylat 90.3 0.73 2.5E-05 45.8 8.4 32 175-207 6-37 (213)
365 3aez_A Pantothenate kinase; tr 90.2 0.14 4.9E-06 54.4 3.3 27 173-199 88-114 (312)
366 2grj_A Dephospho-COA kinase; T 90.2 0.15 5.2E-06 49.9 3.3 26 174-199 11-36 (192)
367 2pt5_A Shikimate kinase, SK; a 90.2 0.15 5.3E-06 48.5 3.2 24 177-200 2-25 (168)
368 3a4m_A L-seryl-tRNA(SEC) kinas 90.2 0.16 5.3E-06 52.7 3.5 25 175-199 4-28 (260)
369 2p5t_B PEZT; postsegregational 90.1 0.18 6.1E-06 52.0 3.9 27 174-200 31-57 (253)
370 2j37_W Signal recognition part 90.1 1.6 5.5E-05 49.4 12.0 25 174-198 100-124 (504)
371 3tqc_A Pantothenate kinase; bi 90.1 0.21 7.4E-06 53.0 4.5 27 174-200 91-117 (321)
372 1rj9_A FTSY, signal recognitio 90.1 0.22 7.6E-06 52.7 4.7 26 174-199 101-126 (304)
373 1tue_A Replication protein E1; 90.0 0.21 7.1E-06 48.8 4.0 39 162-200 44-83 (212)
374 1qf9_A UMP/CMP kinase, protein 90.0 0.15 5.3E-06 49.7 3.2 26 175-200 6-31 (194)
375 2c61_A A-type ATP synthase non 89.8 0.47 1.6E-05 52.7 7.1 98 166-263 142-259 (469)
376 2jeo_A Uridine-cytidine kinase 89.8 0.17 5.7E-06 51.9 3.4 25 173-197 23-47 (245)
377 1s96_A Guanylate kinase, GMP k 89.8 0.16 5.6E-06 50.8 3.2 26 173-198 14-39 (219)
378 4tmk_A Protein (thymidylate ki 89.8 0.77 2.6E-05 45.6 8.1 53 175-228 3-55 (213)
379 2cdn_A Adenylate kinase; phosp 89.8 0.17 5.7E-06 50.0 3.2 27 174-200 19-45 (201)
380 3zvl_A Bifunctional polynucleo 89.7 0.66 2.2E-05 51.6 8.3 27 173-199 256-282 (416)
381 2pbr_A DTMP kinase, thymidylat 89.7 0.17 5.8E-06 49.5 3.2 23 177-199 2-24 (195)
382 3oaa_A ATP synthase subunit al 89.6 0.68 2.3E-05 51.5 8.1 96 166-264 152-265 (513)
383 1nn5_A Similar to deoxythymidy 89.6 0.21 7.3E-06 49.8 3.9 27 174-200 8-34 (215)
384 1htw_A HI0065; nucleotide-bind 89.5 0.19 6.7E-06 47.3 3.3 24 173-196 31-54 (158)
385 4a1f_A DNAB helicase, replicat 89.5 0.82 2.8E-05 48.9 8.5 53 174-230 45-97 (338)
386 3mfy_A V-type ATP synthase alp 89.5 0.91 3.1E-05 51.1 9.0 58 165-226 216-275 (588)
387 3tlx_A Adenylate kinase 2; str 89.5 0.33 1.1E-05 49.6 5.2 27 173-199 27-53 (243)
388 2f1r_A Molybdopterin-guanine d 89.4 0.11 3.9E-06 49.7 1.6 24 175-198 2-25 (171)
389 4hlc_A DTMP kinase, thymidylat 89.4 0.47 1.6E-05 46.9 6.1 30 176-207 3-32 (205)
390 2r6a_A DNAB helicase, replicat 89.4 2 6.8E-05 48.3 12.2 52 173-227 201-252 (454)
391 2wwf_A Thymidilate kinase, put 89.4 0.19 6.6E-06 50.0 3.3 32 175-207 10-41 (212)
392 1zd8_A GTP:AMP phosphotransfer 89.3 0.2 6.7E-06 50.7 3.3 26 175-200 7-32 (227)
393 1pgv_A TMD-1, tropomodulin TMD 89.2 0.32 1.1E-05 47.4 4.6 64 540-604 37-111 (197)
394 2v54_A DTMP kinase, thymidylat 89.2 0.23 7.8E-06 49.1 3.7 25 175-199 4-28 (204)
395 1zak_A Adenylate kinase; ATP:A 89.1 0.19 6.6E-06 50.5 3.2 26 175-200 5-30 (222)
396 1gtv_A TMK, thymidylate kinase 89.1 0.11 3.6E-06 52.0 1.2 24 176-199 1-24 (214)
397 1aky_A Adenylate kinase; ATP:A 89.0 0.22 7.6E-06 50.0 3.5 26 175-200 4-29 (220)
398 3nwj_A ATSK2; P loop, shikimat 89.0 0.15 5.2E-06 52.2 2.3 26 175-200 48-73 (250)
399 3tif_A Uncharacterized ABC tra 88.8 0.22 7.6E-06 50.5 3.4 27 173-199 29-55 (235)
400 3gqb_B V-type ATP synthase bet 88.8 0.49 1.7E-05 52.2 6.2 99 166-264 137-262 (464)
401 3cmu_A Protein RECA, recombina 88.7 0.69 2.4E-05 60.6 8.5 84 173-263 1425-1515(2050)
402 2onk_A Molybdate/tungstate ABC 88.6 0.23 7.7E-06 50.6 3.2 26 173-199 23-48 (240)
403 3fb4_A Adenylate kinase; psych 88.5 0.23 8E-06 49.6 3.3 23 177-199 2-24 (216)
404 1m7g_A Adenylylsulfate kinase; 88.5 0.25 8.6E-06 49.2 3.5 27 173-199 23-49 (211)
405 2i3b_A HCR-ntpase, human cance 88.5 0.19 6.6E-06 49.0 2.5 20 176-195 2-21 (189)
406 2f6r_A COA synthase, bifunctio 88.4 0.22 7.6E-06 52.1 3.2 23 174-196 74-96 (281)
407 3k1j_A LON protease, ATP-depen 88.4 0.56 1.9E-05 55.1 6.9 45 154-200 41-85 (604)
408 2pez_A Bifunctional 3'-phospho 88.3 0.25 8.4E-06 47.7 3.2 25 175-199 5-29 (179)
409 3lnc_A Guanylate kinase, GMP k 88.3 0.17 5.8E-06 51.3 2.1 26 174-199 26-52 (231)
410 3dl0_A Adenylate kinase; phosp 88.3 0.25 8.7E-06 49.3 3.4 23 177-199 2-24 (216)
411 3ake_A Cytidylate kinase; CMP 88.3 0.25 8.5E-06 48.9 3.3 25 176-200 3-27 (208)
412 3end_A Light-independent proto 88.2 0.23 8E-06 52.8 3.2 26 173-198 39-64 (307)
413 1np6_A Molybdopterin-guanine d 88.2 0.25 8.5E-06 47.4 3.1 26 174-199 5-30 (174)
414 3d3q_A TRNA delta(2)-isopenten 88.2 0.25 8.7E-06 52.7 3.4 24 176-199 8-31 (340)
415 3p32_A Probable GTPase RV1496/ 88.2 0.43 1.5E-05 51.9 5.3 34 163-196 65-100 (355)
416 3v9p_A DTMP kinase, thymidylat 88.2 0.6 2E-05 46.9 6.0 27 174-200 24-50 (227)
417 3lv8_A DTMP kinase, thymidylat 88.1 1.5 5E-05 44.3 8.8 37 175-212 27-63 (236)
418 1vht_A Dephospho-COA kinase; s 88.1 0.26 8.9E-06 49.3 3.3 23 175-197 4-26 (218)
419 1fx0_A ATP synthase alpha chai 88.1 0.44 1.5E-05 53.3 5.3 88 173-264 161-266 (507)
420 3b9q_A Chloroplast SRP recepto 88.1 0.25 8.4E-06 52.3 3.2 26 174-199 99-124 (302)
421 3ld9_A DTMP kinase, thymidylat 88.1 0.73 2.5E-05 46.1 6.5 28 173-200 19-46 (223)
422 2cbz_A Multidrug resistance-as 88.1 0.27 9.1E-06 50.0 3.4 25 173-197 29-53 (237)
423 3r20_A Cytidylate kinase; stru 88.0 0.26 9.1E-06 49.6 3.2 26 175-200 9-34 (233)
424 2pcj_A ABC transporter, lipopr 88.0 0.23 7.9E-06 50.0 2.8 27 173-199 28-54 (224)
425 1sq5_A Pantothenate kinase; P- 87.9 0.25 8.7E-06 52.5 3.2 27 173-199 78-104 (308)
426 4eaq_A DTMP kinase, thymidylat 87.9 0.52 1.8E-05 47.6 5.4 27 174-200 25-51 (229)
427 3a8t_A Adenylate isopentenyltr 87.9 0.29 1E-05 52.0 3.6 27 174-200 39-65 (339)
428 2ehv_A Hypothetical protein PH 87.8 0.25 8.4E-06 50.6 3.0 23 173-195 28-50 (251)
429 1b0u_A Histidine permease; ABC 87.7 0.28 9.7E-06 50.7 3.3 27 173-199 30-56 (262)
430 1cr0_A DNA primase/helicase; R 87.5 0.67 2.3E-05 48.8 6.3 52 173-228 33-85 (296)
431 2ck3_A ATP synthase subunit al 87.5 1.2 4.3E-05 49.7 8.5 99 166-264 152-273 (510)
432 2pt7_A CAG-ALFA; ATPase, prote 87.4 0.79 2.7E-05 49.1 6.8 87 174-269 170-256 (330)
433 3gfo_A Cobalt import ATP-bindi 87.4 0.27 9.3E-06 51.1 3.0 25 173-197 32-56 (275)
434 2olj_A Amino acid ABC transpor 87.3 0.31 1.1E-05 50.3 3.3 27 173-199 48-74 (263)
435 3exa_A TRNA delta(2)-isopenten 87.2 0.34 1.2E-05 50.8 3.5 25 175-199 3-27 (322)
436 3tmk_A Thymidylate kinase; pho 87.1 1.2 4.2E-05 44.2 7.5 27 174-200 4-30 (216)
437 3b85_A Phosphate starvation-in 87.1 0.23 7.9E-06 49.3 2.1 21 174-194 21-41 (208)
438 1pgv_A TMD-1, tropomodulin TMD 87.1 0.48 1.6E-05 46.2 4.3 36 542-577 68-108 (197)
439 1nlf_A Regulatory protein REPA 87.1 0.49 1.7E-05 49.4 4.8 23 174-196 29-51 (279)
440 3gmt_A Adenylate kinase; ssgci 87.1 1.4 4.7E-05 44.2 7.8 26 175-200 8-33 (230)
441 2r8r_A Sensor protein; KDPD, P 87.0 0.48 1.6E-05 47.2 4.4 30 177-208 8-38 (228)
442 3crm_A TRNA delta(2)-isopenten 87.0 0.32 1.1E-05 51.5 3.3 25 176-200 6-30 (323)
443 1sgw_A Putative ABC transporte 87.0 0.27 9.1E-06 49.0 2.5 27 173-199 33-59 (214)
444 1yrb_A ATP(GTP)binding protein 87.0 0.32 1.1E-05 50.3 3.2 25 174-198 13-37 (262)
445 4g1u_C Hemin import ATP-bindin 86.9 0.3 1E-05 50.6 2.9 27 173-199 35-61 (266)
446 3vr4_A V-type sodium ATPase ca 86.9 1.3 4.4E-05 50.2 8.1 56 166-225 222-279 (600)
447 1mv5_A LMRA, multidrug resista 86.9 0.34 1.2E-05 49.5 3.3 23 173-195 26-48 (243)
448 1ji0_A ABC transporter; ATP bi 86.9 0.31 1.1E-05 49.7 3.0 27 173-199 30-56 (240)
449 1g6h_A High-affinity branched- 86.8 0.31 1.1E-05 50.2 3.0 27 173-199 31-57 (257)
450 2ff7_A Alpha-hemolysin translo 86.8 0.31 1.1E-05 49.8 3.0 27 173-199 33-59 (247)
451 3be4_A Adenylate kinase; malar 86.8 0.33 1.1E-05 48.6 3.1 25 176-200 6-30 (217)
452 2xb4_A Adenylate kinase; ATP-b 86.8 0.34 1.2E-05 48.7 3.2 23 177-199 2-24 (223)
453 2ghi_A Transport protein; mult 86.7 0.35 1.2E-05 49.9 3.4 25 173-197 44-68 (260)
454 1ak2_A Adenylate kinase isoenz 86.7 0.39 1.3E-05 48.7 3.7 26 175-200 16-41 (233)
455 2d2e_A SUFC protein; ABC-ATPas 86.6 0.32 1.1E-05 49.8 3.0 25 173-197 27-51 (250)
456 2ixe_A Antigen peptide transpo 86.6 0.36 1.2E-05 50.1 3.4 25 173-197 43-67 (271)
457 2v9p_A Replication protein E1; 86.5 0.35 1.2E-05 50.9 3.3 26 173-198 124-149 (305)
458 2og2_A Putative signal recogni 86.5 0.34 1.2E-05 52.4 3.2 26 174-199 156-181 (359)
459 1zu4_A FTSY; GTPase, signal re 86.4 0.46 1.6E-05 50.6 4.2 26 174-199 104-129 (320)
460 2zu0_C Probable ATP-dependent 86.3 0.37 1.3E-05 49.9 3.3 25 173-197 44-68 (267)
461 1e4v_A Adenylate kinase; trans 86.3 0.35 1.2E-05 48.2 3.1 23 177-199 2-24 (214)
462 2qi9_C Vitamin B12 import ATP- 86.3 0.43 1.5E-05 48.8 3.7 28 173-200 24-51 (249)
463 2yz2_A Putative ABC transporte 86.1 0.4 1.4E-05 49.7 3.4 25 173-197 31-55 (266)
464 2vp4_A Deoxynucleoside kinase; 85.9 0.39 1.3E-05 48.5 3.2 26 173-198 18-43 (230)
465 2eyu_A Twitching motility prot 85.9 0.41 1.4E-05 49.4 3.3 111 173-290 23-134 (261)
466 1a7j_A Phosphoribulokinase; tr 85.9 0.24 8.2E-06 52.1 1.6 25 174-198 4-28 (290)
467 2e87_A Hypothetical protein PH 85.8 9.8 0.00033 41.0 14.6 21 174-194 166-186 (357)
468 1oix_A RAS-related protein RAB 85.7 0.37 1.3E-05 47.0 2.8 21 175-195 29-49 (191)
469 3foz_A TRNA delta(2)-isopenten 85.7 0.42 1.5E-05 50.0 3.3 27 174-200 9-35 (316)
470 2nq2_C Hypothetical ABC transp 85.6 0.38 1.3E-05 49.4 2.9 26 173-198 29-54 (253)
471 2wji_A Ferrous iron transport 85.6 0.41 1.4E-05 45.3 3.0 20 176-195 4-23 (165)
472 2ihy_A ABC transporter, ATP-bi 85.6 0.38 1.3E-05 50.1 3.0 27 173-199 45-71 (279)
473 2zej_A Dardarin, leucine-rich 85.5 0.37 1.3E-05 46.6 2.7 20 177-196 4-23 (184)
474 1g8f_A Sulfate adenylyltransfe 85.4 0.7 2.4E-05 52.4 5.2 47 154-200 372-420 (511)
475 2ged_A SR-beta, signal recogni 85.4 0.76 2.6E-05 44.6 5.0 22 173-194 46-67 (193)
476 3upu_A ATP-dependent DNA helic 85.3 1.2 4.1E-05 50.3 7.2 41 158-199 29-69 (459)
477 3nh6_A ATP-binding cassette SU 85.3 0.38 1.3E-05 50.8 2.8 24 173-196 78-101 (306)
478 3j16_B RLI1P; ribosome recycli 85.3 3.1 0.00011 48.4 10.7 23 173-195 101-123 (608)
479 1q3t_A Cytidylate kinase; nucl 85.1 0.52 1.8E-05 47.8 3.7 28 173-200 14-41 (236)
480 2q6t_A DNAB replication FORK h 85.0 3.4 0.00012 46.2 10.7 53 174-229 199-251 (444)
481 2dr3_A UPF0273 protein PH0284; 84.8 0.6 2E-05 47.5 4.0 47 174-225 22-69 (247)
482 2f9l_A RAB11B, member RAS onco 84.8 0.42 1.4E-05 46.9 2.7 20 176-195 6-25 (199)
483 1tq4_A IIGP1, interferon-induc 84.8 0.54 1.8E-05 51.8 3.8 31 165-195 57-89 (413)
484 2iw3_A Elongation factor 3A; a 84.7 2.6 8.9E-05 51.5 10.0 124 173-301 459-618 (986)
485 1cp2_A CP2, nitrogenase iron p 84.4 0.87 3E-05 47.1 5.1 24 176-199 2-25 (269)
486 2dyk_A GTP-binding protein; GT 84.4 0.51 1.8E-05 44.1 3.1 19 176-194 2-20 (161)
487 1ltq_A Polynucleotide kinase; 84.3 0.46 1.6E-05 50.3 3.0 23 176-198 3-25 (301)
488 3f9v_A Minichromosome maintena 84.2 0.48 1.6E-05 55.3 3.3 46 154-199 295-351 (595)
489 2pjz_A Hypothetical protein ST 84.2 0.49 1.7E-05 48.8 3.0 23 175-197 30-52 (263)
490 2bbs_A Cystic fibrosis transme 84.2 0.52 1.8E-05 49.4 3.2 25 173-197 62-86 (290)
491 1p9r_A General secretion pathw 84.1 1.2 4.2E-05 49.2 6.3 29 172-200 164-192 (418)
492 2ocp_A DGK, deoxyguanosine kin 84.0 0.58 2E-05 47.6 3.5 26 175-200 2-27 (241)
493 2qmh_A HPR kinase/phosphorylas 83.9 0.52 1.8E-05 45.8 2.8 25 174-198 33-57 (205)
494 2afh_E Nitrogenase iron protei 83.7 0.53 1.8E-05 49.5 3.1 24 175-198 2-25 (289)
495 2ce2_X GTPase HRAS; signaling 83.6 0.5 1.7E-05 44.3 2.6 18 177-194 5-22 (166)
496 1p5z_B DCK, deoxycytidine kina 83.5 0.51 1.7E-05 48.8 2.8 27 174-200 23-49 (263)
497 1svm_A Large T antigen; AAA+ f 83.5 0.59 2E-05 50.9 3.3 28 173-200 167-194 (377)
498 1z2a_A RAS-related protein RAB 83.3 0.54 1.9E-05 44.3 2.7 19 176-194 6-24 (168)
499 3vkg_A Dynein heavy chain, cyt 83.3 4.5 0.00015 55.7 12.2 201 178-427 1307-1547(3245)
500 3iqw_A Tail-anchored protein t 83.1 1.3 4.6E-05 47.3 6.0 30 170-199 11-40 (334)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=1.3e-47 Score=453.06 Aligned_cols=306 Identities=17% Similarity=0.195 Sum_probs=248.0
Q ss_pred CchHHHHHHHHHHhccC---CccEEEEEcCCCChHHHHHHHhh----hhcccCCCCCeEEEEEeCCCC--CHHHHHHHHH
Q 001999 157 PSHKEYVETLEKHLSSG---GLKKICICGPLGVGKTTIMENSH----DSVGESGRFDIIFWVNVNTDG--NISDIQEIIL 227 (984)
Q Consensus 157 vgr~~~~~~l~~~L~~~---~~~vi~I~G~gGiGKTtLa~~~~----~~~~~~~~F~~~~wv~vs~~~--~~~~i~~~i~ 227 (984)
|||+.++++|.++|... ..++|+|+||||+||||||++++ .+++ .+|+.++||++++.+ ++..+++.|+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~--~~F~~~~wv~vs~~~~~~~~~~~~~il 208 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIG--INYDSIVWLKDSGTAPKSTFDLFTDIL 208 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBT--TTBSEEEEEECCCCSTTHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHh--ccCCcEEEEEECCCCCCCHHHHHHHHH
Confidence 69999999999999753 68999999999999999999966 4677 999999999999985 8999999999
Q ss_pred HHhccCcc--c------cchHHHHHHHHHHHcCC-cEEEEEECCCCccchhhhccccCCCCcEEEEEcCCccccc--c-C
Q 001999 228 ERLKVNAK--E------LDNAQRADNISKELKDK-RYVLFLDGVSSEINFKEIGIHDDHGRGKVVFACRSREFCW--Q-A 295 (984)
Q Consensus 228 ~~l~~~~~--~------~~~~~~~~~l~~~L~~k-r~LlVlDdv~~~~~~~~~~~~~~~~gs~ilvTTR~~~v~~--~-~ 295 (984)
++++.... . .+.+.+...+++.|+++ ||||||||||+...+ . ++. .+||+||||||++.++. + .
T Consensus 209 ~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~--~~~-~~gs~ilvTTR~~~v~~~~~~~ 284 (549)
T 2a5y_B 209 LMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-R--WAQ-ELRLRCLVTTRDVEISNAASQT 284 (549)
T ss_dssp HHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-H--HHH-HTTCEEEEEESBGGGGGGCCSC
T ss_pred HHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-c--ccc-cCCCEEEEEcCCHHHHHHcCCC
Confidence 99986522 1 11256789999999996 999999999998754 2 221 27999999999999988 3 3
Q ss_pred CceEEccCCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCCchHHHHHHHHhhcCccHHHHHHHHHHhhcCCccc
Q 001999 296 DDVIHVERLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGMPYMLKLIGKELVNQSEVAIWRATVDDLRSTSSEE 375 (984)
Q Consensus 296 ~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~~~~~l~~~~~~~~w~~~l~~l~~~~~~~ 375 (984)
..+|++++|+.++||+||.+.++... ..+++++++++|+++|+|+||||+++|+.|+.+ + |+.+ +.+..... .
T Consensus 285 ~~~~~l~~L~~~ea~~Lf~~~a~~~~-~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~---w~~~-~~l~~~l~-~ 357 (549)
T 2a5y_B 285 CEFIEVTSLEIDECYDFLEAYGMPMP-VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T---FEKM-AQLNNKLE-S 357 (549)
T ss_dssp EEEEECCCCCHHHHHHHHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S---HHHH-HHHHHHHH-H
T ss_pred CeEEECCCCCHHHHHHHHHHHhcCCC-CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h---HHHH-HHhHHHhh-c
Confidence 36799999999999999999988653 357888999999999999999999999999876 3 4332 23222111 0
Q ss_pred cccHHHHHHHHHHHHhcChHHHHHHHh-----------hhcccCCCCccCHHHHHHHHhhc--CCCCccCcccchhhHHH
Q 001999 376 KKELEEVYRFFKLVYKNLSSVQQHCLL-----------GWAIFPTGLEISQDYIIDCWAAQ--KFLPRFGKIGDARDTGC 442 (984)
Q Consensus 376 ~~~~~~i~~~l~~sy~~L~~~~k~cfl-----------~~s~fp~~~~i~~~~Li~~W~ae--g~i~~~~~~~~~~~~~~ 442 (984)
....++.+++.+||++||+++|.||+ |||+||+++.|+ +++|+|+ ||+...+...+.+++++
T Consensus 358 -~~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~ 432 (549)
T 2a5y_B 358 -RGLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD 432 (549)
T ss_dssp -HCSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH
T ss_pred -ccHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH
Confidence 01234788899999999999999999 999999999999 8999999 99987544566778888
Q ss_pred HHHHHHhhccccccccc--ccccchHHHHHHHHHHHhhhcC
Q 001999 443 LILDKFEKKSLLQKQSK--EKRYKMIEFFQRAALRIANERD 481 (984)
Q Consensus 443 ~~~~~L~~~~ll~~~~~--~~~~~mHdlv~~~a~~~~~~~~ 481 (984)
||++|+++||+++... ..+|+|||+||++|++++.+++
T Consensus 433 -~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 433 -RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp -HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred -HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 9999999999998653 4689999999999999887754
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=1.1e-38 Score=377.39 Aligned_cols=278 Identities=18% Similarity=0.264 Sum_probs=228.3
Q ss_pred CCchHHHHHHHHHHhcc-CCccEEEEEcCCCChHHHHHHHhhh--hcccCCCCCe-EEEEEeCCCCCHHHHHHHHHHHhc
Q 001999 156 FPSHKEYVETLEKHLSS-GGLKKICICGPLGVGKTTIMENSHD--SVGESGRFDI-IFWVNVNTDGNISDIQEIILERLK 231 (984)
Q Consensus 156 ~vgr~~~~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~~~~--~~~~~~~F~~-~~wv~vs~~~~~~~i~~~i~~~l~ 231 (984)
.|||++++++|.++|.+ +..++|+|+||||+||||||+++++ +++ .+|+. ++||++++.++...++..|++.++
T Consensus 130 ~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~--~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~ 207 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ--CKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHH--HHHSSCEEEEECCCSSSHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHH--HhCCCcEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 49999999999999976 5689999999999999999999654 566 88986 999999999999888888887643
Q ss_pred cCc------cc----c-ch-HHHHHHHHHHH---cCCcEEEEEECCCCccchhhhccccCCCCcEEEEEcCCccccc--c
Q 001999 232 VNA------KE----L-DN-AQRADNISKEL---KDKRYVLFLDGVSSEINFKEIGIHDDHGRGKVVFACRSREFCW--Q 294 (984)
Q Consensus 232 ~~~------~~----~-~~-~~~~~~l~~~L---~~kr~LlVlDdv~~~~~~~~~~~~~~~~gs~ilvTTR~~~v~~--~ 294 (984)
... .. . .. +.+...+++.| .+||+||||||||+...|+.+ + +||+||||||++.++. .
T Consensus 208 ~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f--~---pGSRILVTTRd~~Va~~l~ 282 (1221)
T 1vt4_I 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF--N---LSCKILLTTRFKQVTDFLS 282 (1221)
T ss_dssp HHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHH--H---SSCCEEEECSCSHHHHHHH
T ss_pred hcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhh--C---CCeEEEEeccChHHHHhcC
Confidence 211 00 0 11 45667777766 689999999999998888775 2 7899999999999885 3
Q ss_pred CCceEEcc------CCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCCchHHHHHHHHhhcC-ccHHHHHHHHHH
Q 001999 295 ADDVIHVE------RLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGMPYMLKLIGKELVNQ-SEVAIWRATVDD 367 (984)
Q Consensus 295 ~~~~~~l~------~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~~~~~l~~~-~~~~~w~~~l~~ 367 (984)
....+.++ +|+.+|||+||.+..+.. ..++..+| |+|+||||+++|+.|+.+ .+.++|+..
T Consensus 283 g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~------~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~--- 350 (1221)
T 1vt4_I 283 AATTTHISLDHHSMTLTPDEVKSLLLKYLDCR------PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV--- 350 (1221)
T ss_dssp HHSSCEEEECSSSSCCCHHHHHHHHHHHHCCC------TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC---
T ss_pred CCeEEEecCccccCCcCHHHHHHHHHHHcCCC------HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcC---
Confidence 22355666 999999999999985432 12244444 999999999999999988 467888752
Q ss_pred hhcCCccccccHHHHHHHHHHHHhcChHHH-HHHHhhhcccCCCCccCHHHHHHHHhhcCCCCccCcccchhhHHHHHHH
Q 001999 368 LRSTSSEEKKELEEVYRFFKLVYKNLSSVQ-QHCLLGWAIFPTGLEISQDYIIDCWAAQKFLPRFGKIGDARDTGCLILD 446 (984)
Q Consensus 368 l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~-k~cfl~~s~fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~~~~~~~~~~~ 446 (984)
. ...+..+|.+||+.||++. |+||+|||+||+++.|+++.++.+|+++| ++.++.+++
T Consensus 351 ----~------~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG-----------eedAe~~L~ 409 (1221)
T 1vt4_I 351 ----N------CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI-----------KSDVMVVVN 409 (1221)
T ss_dssp ----S------CHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC-----------SHHHHHHHH
T ss_pred ----C------hhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC-----------HHHHHHHHH
Confidence 1 2569999999999999998 99999999999999999999999999987 135888999
Q ss_pred HHhhcccccccccccccchHHHHHHHH
Q 001999 447 KFEKKSLLQKQSKEKRYKMIEFFQRAA 473 (984)
Q Consensus 447 ~L~~~~ll~~~~~~~~~~mHdlv~~~a 473 (984)
+|+++||++.......|+|||++++++
T Consensus 410 eLvdRSLLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 410 KLHKYSLVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp HHHTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred HHHhhCCEEEeCCCCEEEehHHHHHHh
Confidence 999999999865467899999999965
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=4.4e-37 Score=403.32 Aligned_cols=309 Identities=19% Similarity=0.288 Sum_probs=251.7
Q ss_pred ccCCCCCCchHHHHHHHHHHhcc--CCccEEEEEcCCCChHHHHHHHhhhhccc-CCCC-CeEEEEEeCCCCC--HHHHH
Q 001999 150 SRHASKFPSHKEYVETLEKHLSS--GGLKKICICGPLGVGKTTIMENSHDSVGE-SGRF-DIIFWVNVNTDGN--ISDIQ 223 (984)
Q Consensus 150 ~~~~~~~vgr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~~~~~~~~-~~~F-~~~~wv~vs~~~~--~~~i~ 223 (984)
|.+...||||++++++|.++|.. +..++|+|+||||+||||||++++++.+. ..+| +.++||++++..+ ....+
T Consensus 120 p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 199 (1249)
T 3sfz_A 120 PQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKL 199 (1249)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHH
T ss_pred CCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHH
Confidence 34556799999999999999953 67899999999999999999995555210 1545 7888999998654 34456
Q ss_pred HHHHHHhccCccc-----cchHHHHHHHHHHHcCC--cEEEEEECCCCccchhhhccccCCCCcEEEEEcCCccccc---
Q 001999 224 EIILERLKVNAKE-----LDNAQRADNISKELKDK--RYVLFLDGVSSEINFKEIGIHDDHGRGKVVFACRSREFCW--- 293 (984)
Q Consensus 224 ~~i~~~l~~~~~~-----~~~~~~~~~l~~~L~~k--r~LlVlDdv~~~~~~~~~~~~~~~~gs~ilvTTR~~~v~~--- 293 (984)
..++..+...... ...+.+...+++.+.++ |+||||||||+...|..+ .+||+||||||++.++.
T Consensus 200 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-----~~~~~ilvTtR~~~~~~~~~ 274 (1249)
T 3sfz_A 200 QNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-----DNQCQILLTTRDKSVTDSVM 274 (1249)
T ss_dssp HHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-----CSSCEEEEEESSTTTTTTCC
T ss_pred HHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-----cCCCEEEEEcCCHHHHHhhc
Confidence 6777777654321 12277888899999877 999999999998877765 57899999999999985
Q ss_pred cCCceEEccC-CChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCCchHHHHHHHHhhcCccHHHHHHHHHHhhcCC
Q 001999 294 QADDVIHVER-LSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGMPYMLKLIGKELVNQSEVAIWRATVDDLRSTS 372 (984)
Q Consensus 294 ~~~~~~~l~~-L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~~~~~l~~~~~~~~w~~~l~~l~~~~ 372 (984)
+....+.+.+ |++++|++||...++.. .+.+++++++|+++|+|+||||+++|++|+.+. ..|+..++.+....
T Consensus 275 ~~~~~~~~~~~l~~~~a~~l~~~~~~~~---~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~~~~ 349 (1249)
T 3sfz_A 275 GPKHVVPVESGLGREKGLEILSLFVNMK---KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQNKQ 349 (1249)
T ss_dssp SCBCCEECCSSCCHHHHHHHHHHHHTSC---STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHHSCC
T ss_pred CCceEEEecCCCCHHHHHHHHHHhhCCC---hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHhhhh
Confidence 5667899996 99999999999998654 234456899999999999999999999999873 46888888876543
Q ss_pred cc-----ccccHHHHHHHHHHHHhcChHHHHHHHhhhcccCCCCccCHHHHHHHHhhcCCCCccCcccchhhHHHHHHHH
Q 001999 373 SE-----EKKELEEVYRFFKLVYKNLSSVQQHCLLGWAIFPTGLEISQDYIIDCWAAQKFLPRFGKIGDARDTGCLILDK 447 (984)
Q Consensus 373 ~~-----~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~s~fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~~~~~~~~~~~~ 447 (984)
.. .....+.+..++.+||+.||++.|.||+|||+||+++.|+++.++.+|.++ ++.++.++++
T Consensus 350 ~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~------------~~~~~~~l~~ 417 (1249)
T 3sfz_A 350 FKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE------------TEEVEDILQE 417 (1249)
T ss_dssp CCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC------------HHHHHHHHHH
T ss_pred hhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC------------HHHHHHHHHH
Confidence 21 112335699999999999999999999999999999999999999999664 3678899999
Q ss_pred Hhhccccccccc--ccccchHHHHHHHHHHHhhhc
Q 001999 448 FEKKSLLQKQSK--EKRYKMIEFFQRAALRIANER 480 (984)
Q Consensus 448 L~~~~ll~~~~~--~~~~~mHdlv~~~a~~~~~~~ 480 (984)
|+++||++.... ..+|+|||+||++|+..+.++
T Consensus 418 L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 418 FVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 999999997653 336999999999999987765
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=1.5e-33 Score=338.31 Aligned_cols=305 Identities=19% Similarity=0.294 Sum_probs=237.5
Q ss_pred cCCCCCCchHHHHHHHHHHhcc--CCccEEEEEcCCCChHHHHHHHhhhhccc-CCCC-CeEEEEEeCCCCCHHHHHHHH
Q 001999 151 RHASKFPSHKEYVETLEKHLSS--GGLKKICICGPLGVGKTTIMENSHDSVGE-SGRF-DIIFWVNVNTDGNISDIQEII 226 (984)
Q Consensus 151 ~~~~~~vgr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~~~~~~~~-~~~F-~~~~wv~vs~~~~~~~i~~~i 226 (984)
.+++.+|||+.++++|.++|.. +..++|+|+||||+||||||++++++.+. ..+| +.++|++++.. +...+...+
T Consensus 121 ~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l 199 (591)
T 1z6t_A 121 QRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKL 199 (591)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHH
T ss_pred CCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHHH
Confidence 3456799999999999999974 56899999999999999999996554311 2789 58999999876 444444444
Q ss_pred ---HHHhccCc-----cccchHHHHHHHHHHHcC--CcEEEEEECCCCccchhhhccccCCCCcEEEEEcCCccccc-cC
Q 001999 227 ---LERLKVNA-----KELDNAQRADNISKELKD--KRYVLFLDGVSSEINFKEIGIHDDHGRGKVVFACRSREFCW-QA 295 (984)
Q Consensus 227 ---~~~l~~~~-----~~~~~~~~~~~l~~~L~~--kr~LlVlDdv~~~~~~~~~~~~~~~~gs~ilvTTR~~~v~~-~~ 295 (984)
+..++... .....+.....+.+.+.+ +++||||||+|+...+..+ ..|++||||||+..++. ..
T Consensus 200 ~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-----~~~~~ilvTsR~~~~~~~~~ 274 (591)
T 1z6t_A 200 QNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-----DSQCQILLTTRDKSVTDSVM 274 (591)
T ss_dssp HHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-----CSSCEEEEEESCGGGGTTCC
T ss_pred HHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-----cCCCeEEEECCCcHHHHhcC
Confidence 33444211 111226677788888876 7999999999987666543 56899999999999886 23
Q ss_pred CceEEc---cCCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCCchHHHHHHHHhhcCccHHHHHHHHHHhhcCC
Q 001999 296 DDVIHV---ERLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGMPYMLKLIGKELVNQSEVAIWRATVDDLRSTS 372 (984)
Q Consensus 296 ~~~~~l---~~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~~~~~l~~~~~~~~w~~~l~~l~~~~ 372 (984)
...+++ ++|+.+++++||.+.++.. .+...+.+.+|+++|+|+|+|++.+|+.++.+. ..|+.+++.+....
T Consensus 275 ~~~~~v~~l~~L~~~ea~~L~~~~~~~~---~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~~~l~~l~~~~ 349 (591)
T 1z6t_A 275 GPKYVVPVESSLGKEKGLEILSLFVNMK---KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWEYYLKQLQNKQ 349 (591)
T ss_dssp SCEEEEECCSSCCHHHHHHHHHHHHTSC---GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHHHHHHHHHSCC
T ss_pred CCceEeecCCCCCHHHHHHHHHHHhCCC---cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHHHHHHHHHHhH
Confidence 455555 4899999999999998753 122345789999999999999999999999863 36888888876543
Q ss_pred ccc-----cccHHHHHHHHHHHHhcChHHHHHHHhhhcccCCCCccCHHHHHHHHhhcCCCCccCcccchhhHHHHHHHH
Q 001999 373 SEE-----KKELEEVYRFFKLVYKNLSSVQQHCLLGWAIFPTGLEISQDYIIDCWAAQKFLPRFGKIGDARDTGCLILDK 447 (984)
Q Consensus 373 ~~~-----~~~~~~i~~~l~~sy~~L~~~~k~cfl~~s~fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~~~~~~~~~~~~ 447 (984)
... ......+..++..||+.||++.|.||++||+||+++.|+.+.+...|.++ .+.++.++++
T Consensus 350 ~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~------------~~~~~~~l~~ 417 (591)
T 1z6t_A 350 FKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME------------TEEVEDILQE 417 (591)
T ss_dssp CCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC------------HHHHHHHHHH
T ss_pred HHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC------------HHHHHHHHHH
Confidence 100 11235699999999999999999999999999999999999999999653 2457889999
Q ss_pred Hhhccccccccc--ccccchHHHHHHHHHHHhh
Q 001999 448 FEKKSLLQKQSK--EKRYKMIEFFQRAALRIAN 478 (984)
Q Consensus 448 L~~~~ll~~~~~--~~~~~mHdlv~~~a~~~~~ 478 (984)
|+++||++.... ...|+||++||++++....
T Consensus 418 L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 418 FVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp HHHTTSSEEEEETTEEEEECCHHHHHHHHHHTG
T ss_pred HHhCcCeEEecCCCccEEEEcHHHHHHHHhhhh
Confidence 999999986543 3589999999999998743
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.94 E-value=3.2e-25 Score=267.38 Aligned_cols=424 Identities=18% Similarity=0.130 Sum_probs=255.2
Q ss_pred hccCeEeeeccCCCCCCCC--CCCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccC-CcchhcccccCeEe
Q 001999 497 WKDTKKLSLFGFPSSTLPD--MPNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCL-PPSISRLINLNALF 573 (984)
Q Consensus 497 ~~~~r~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~ 573 (984)
...+++|.+++|.+..++. +..+++|++|++++|.+..+++..|.++++|++|+|++|.++.+ |..|+++++|++|+
T Consensus 31 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 31 PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence 3689999999999988654 68899999999999999988777689999999999999999987 78899999999999
Q ss_pred cCCCcccccCc-hhhhccCCCcEEEecCcccc--ccchhhhccCCCCeeecccccccCccccCCCCCCcccchhhhhccc
Q 001999 574 LRSCSLLFQLP-KEIRYLQKLEILDVRHTRIQ--CLPSEIGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSNIISKLC 650 (984)
Q Consensus 574 L~~c~~l~~lp-~~i~~L~~L~~L~l~~~~l~--~lp~~~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~~L~ 650 (984)
+++|. +..+| ..++++++|++|++++|.+. .+|..++++++|++|+++ ++.... ++...++.++
T Consensus 111 L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls-----~n~l~~-------~~~~~~~~l~ 177 (606)
T 3vq2_A 111 AVETK-LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLS-----YNYIQT-------ITVNDLQFLR 177 (606)
T ss_dssp CTTSC-CCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECC-----SSCCCE-------ECTTTTHHHH
T ss_pred ccCCc-cccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEcc-----CCccee-------cChhhhhhhh
Confidence 99975 55555 67999999999999999988 578999999999999998 433221 2222234443
Q ss_pred ---------------------------cccceeeeecCCchhHHhhhhhhhHHHhhccCCCceEEEecCCcchhhhhhhc
Q 001999 651 ---------------------------LLEELIIEVLDPSDRRWKQNVESIAGEIAALEQLTTLHFYFPTIKCFKTFINR 703 (984)
Q Consensus 651 ---------------------------~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 703 (984)
+|+.|++.+.... ....+..+..+++|+.+.+..............
T Consensus 178 ~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~-------~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~ 250 (606)
T 3vq2_A 178 ENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNS-------SNIMKTCLQNLAGLHVHRLILGEFKDERNLEIF 250 (606)
T ss_dssp HCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSC-------HHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCC
T ss_pred ccccccceeeccCCCcceeCcccccCceeeeeeccCCccc-------hhHHHHHhccccccccccccccccccCCccccc
Confidence 3444444432221 234455566677777666654322111000000
Q ss_pred --------------------ccccCCCCCC-CCCCcceeEEEecccCccceeccccccccccccceEEc-cCCCCchhHH
Q 001999 704 --------------------RKSVNGNKSR-HGDNFKSFNIVVGYPQSTSLLAGFDVSEWSAEKHLRFS-AGVEEIPGEF 761 (984)
Q Consensus 704 --------------------~~~~~~~~~~-~~~~~l~~~~~~g~~~~~~~l~~~~~p~~~~L~~L~l~-~~~~~l~~~~ 761 (984)
.....+..|. .....++...+.++.- .. ++ .++.++.|+.|.+. +....++.+
T Consensus 251 ~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~-l~--~l~~~~~L~~L~l~~n~l~~lp~~- 325 (606)
T 3vq2_A 251 EPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI-KY-LE--DVPKHFKWQSLSIIRCQLKQFPTL- 325 (606)
T ss_dssp CGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCC-CC-CC--CCCTTCCCSEEEEESCCCSSCCCC-
T ss_pred ChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccc-hh-hh--hccccccCCEEEcccccCcccccC-
Confidence 0000000000 0001111111111111 00 00 23333445555555 122233321
Q ss_pred HHHhhhccceeecccccccccc-----------------------ccccccccccCeeEEcccCCceEEecCCCCCcccC
Q 001999 762 LTILKQAYSFELIGSQYAVNLS-----------------------NFGVDNLVRLQACVIEDCNEMTSIIDGNHRGVVPF 818 (984)
Q Consensus 762 ~~~l~~L~~L~l~~~~~~~~l~-----------------------~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~ 818 (984)
.+++|+.|.+.++......+ ...+.++++|+.|+++++. +..++. ....+
T Consensus 326 --~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~----~~~~l 398 (606)
T 3vq2_A 326 --DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSA----NFMGL 398 (606)
T ss_dssp --CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EEEECC----CCTTC
T ss_pred --CCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc-cccchh----hccCC
Confidence 34444444444442222110 1122334444444444432 333331 12234
Q ss_pred CCcceeecccccccccccccccccCcccccceeeecccccccccCcHHHHhhcccccEEeecccchhHHHhhcCcccccC
Q 001999 819 QGLNNLHIKNLPKLMHIWVGPIASGSLNSLRTLRVKICHSIKTLFSKEMVAQLNELQDLQVEDCQMIEEIVEAGTVLAIG 898 (984)
Q Consensus 819 ~~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~ 898 (984)
++|+.|.++++.-.... . ......+++|+.|++++| .+... .+..+..+++|++|++++|..... ..+..+.
T Consensus 399 ~~L~~L~l~~n~l~~~~-~-~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~ 470 (606)
T 3vq2_A 399 EELQHLDFQHSTLKRVT-E-FSAFLSLEKLLYLDISYT-NTKID-FDGIFLGLTSLNTLKMAGNSFKDN----TLSNVFA 470 (606)
T ss_dssp TTCCEEECTTSEEESTT-T-TTTTTTCTTCCEEECTTS-CCEEC-CTTTTTTCTTCCEEECTTCEEGGG----EECSCCT
T ss_pred CCCCeeECCCCccCCcc-C-hhhhhccccCCEEECcCC-CCCcc-chhhhcCCCCCCEEECCCCcCCCc----chHHhhc
Confidence 66666666665322111 0 012346778888888887 56655 335577788888888888765321 1345677
Q ss_pred CCCcccEeeccCCccccccCCCCccCCCCcceEeecccccccccCcCCcCCcCcceeechHHh
Q 001999 899 EFPKLKTLELIDLPKLSTICNSLLLPWPSLETIKIKACNALKSFPSTFKNTTMLKVIKGDQAW 961 (984)
Q Consensus 899 ~~~~L~~L~L~~c~~L~~i~~~~~~~l~sL~~L~i~~C~~L~~lp~~~~~l~~L~~l~~~~~~ 961 (984)
.+++|++|+|++| .++.++...+..+++|++|++++|+-....|..+.++++|+.++...+.
T Consensus 471 ~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~ 532 (606)
T 3vq2_A 471 NTTNLTFLDLSKC-QLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR 532 (606)
T ss_dssp TCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC
T ss_pred cCCCCCEEECCCC-cCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc
Confidence 8899999999987 4666654367788999999999987444448888889999999887553
No 6
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.93 E-value=7.8e-26 Score=272.65 Aligned_cols=355 Identities=12% Similarity=0.145 Sum_probs=216.2
Q ss_pred CCcchHhhcCCCccEEeccCCCCcc------------------CCcchh--cccccCeEecCCCcccccCchhhhccCCC
Q 001999 534 KLPMSFFEYMCHLQLLDLHDTSIRC------------------LPPSIS--RLINLNALFLRSCSLLFQLPKEIRYLQKL 593 (984)
Q Consensus 534 ~l~~~~~~~l~~Lr~L~L~~~~i~~------------------lp~~i~--~l~~L~~L~L~~c~~l~~lp~~i~~L~~L 593 (984)
.+|.. ++++++|++|+|++|.++. +|..++ ++++|++|+|++|.....+|..++++++|
T Consensus 197 ~ip~~-l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 275 (636)
T 4eco_A 197 FVSKA-VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEM 275 (636)
T ss_dssp EECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSC
T ss_pred cCCHH-HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCC
Confidence 36665 8889999999999999887 899988 99999999999988778899999999999
Q ss_pred cEEEecCcc-cc--ccchhhhcc------CCCCeeecccccccCccccCCCCCCcccch-hhhhccccccceeeeecCCc
Q 001999 594 EILDVRHTR-IQ--CLPSEIGQL------IKLKCLRVSWVENVGNHTHAGAWPGEMISS-NIISKLCLLEELIIEVLDPS 663 (984)
Q Consensus 594 ~~L~l~~~~-l~--~lp~~~~~L------~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~-~~l~~L~~L~~L~l~~~~~~ 663 (984)
++|++++|+ ++ .+|..++.+ ++|++|+++ ++... .+|. +.++++++|+.|++.+....
T Consensus 276 ~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~-----~n~l~-------~ip~~~~l~~l~~L~~L~L~~N~l~ 343 (636)
T 4eco_A 276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIG-----YNNLK-------TFPVETSLQKMKKLGMLECLYNQLE 343 (636)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECC-----SSCCS-------SCCCHHHHTTCTTCCEEECCSCCCE
T ss_pred CEEECcCCCCCccccchHHHHhhhccccCCCCCEEECC-----CCcCC-------ccCchhhhccCCCCCEEeCcCCcCc
Confidence 999999997 87 488888887 899999998 55433 3675 25888999999988864432
Q ss_pred hhHHhhhhhhhHHHhhccCCCceEEEecCCcchhhhhhhcccccCCCCCCCCCCcceeEEEecccCccceeccccccccc
Q 001999 664 DRRWKQNVESIAGEIAALEQLTTLHFYFPTIKCFKTFINRRKSVNGNKSRHGDNFKSFNIVVGYPQSTSLLAGFDVSEWS 743 (984)
Q Consensus 664 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~l~~~~~p~~~ 743 (984)
..++ .+..+++|+.|+++.+....++..+ ..++
T Consensus 344 --------g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l--------------------------------------~~l~ 376 (636)
T 4eco_A 344 --------GKLP-AFGSEIKLASLNLAYNQITEIPANF--------------------------------------CGFT 376 (636)
T ss_dssp --------EECC-CCEEEEEESEEECCSSEEEECCTTS--------------------------------------EEEC
T ss_pred --------cchh-hhCCCCCCCEEECCCCccccccHhh--------------------------------------hhhc
Confidence 1334 6778888999988876654333211 1112
Q ss_pred c-ccceEEc-cCCCCchhHHH-HHhhhccceeeccccccccccccccc-------cccccCeeEEcccCCceEEecCCCC
Q 001999 744 A-EKHLRFS-AGVEEIPGEFL-TILKQAYSFELIGSQYAVNLSNFGVD-------NLVRLQACVIEDCNEMTSIIDGNHR 813 (984)
Q Consensus 744 ~-L~~L~l~-~~~~~l~~~~~-~~l~~L~~L~l~~~~~~~~l~~~~~~-------~l~~L~~L~l~~~~~l~~i~~~~~~ 813 (984)
. |+.|.++ +.+..++..+. ..+++|+.|++.++......+. .+. .+++|+.|+++++ .++.++...
T Consensus 377 ~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~-~l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~-- 452 (636)
T 4eco_A 377 EQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGK-NFDPLDPTPFKGINVSSINLSNN-QISKFPKEL-- 452 (636)
T ss_dssp TTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTC-SSCTTCSSCCCCCCEEEEECCSS-CCCSCCTHH--
T ss_pred ccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchh-hhcccccccccCCCCCEEECcCC-ccCcCCHHH--
Confidence 2 3344443 12222222100 0112344455544433322222 122 4556777777664 333333211
Q ss_pred CcccCCCcceeecccccccccccccccc-----cCcccccceeeecccccccccCcHHHHh--hcccccEEeecccchhH
Q 001999 814 GVVPFQGLNNLHIKNLPKLMHIWVGPIA-----SGSLNSLRTLRVKICHSIKTLFSKEMVA--QLNELQDLQVEDCQMIE 886 (984)
Q Consensus 814 ~~~~~~~L~~L~l~~~~~l~~i~~~~~~-----~~~l~~L~~L~l~~c~~L~~l~~~~~l~--~l~~L~~L~l~~c~~l~ 886 (984)
...+++|+.|+++++. +..+...... ...+++|+.|++++| .++.+ + ..+. .+++|++|++++|..-
T Consensus 453 -~~~l~~L~~L~Ls~N~-l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l-p-~~~~~~~l~~L~~L~Ls~N~l~- 526 (636)
T 4eco_A 453 -FSTGSPLSSINLMGNM-LTEIPKNSLKDENENFKNTYLLTSIDLRFN-KLTKL-S-DDFRATTLPYLVGIDLSYNSFS- 526 (636)
T ss_dssp -HHTTCCCSEEECCSSC-CSBCCSSSSEETTEECTTGGGCCEEECCSS-CCCBC-C-GGGSTTTCTTCCEEECCSSCCS-
T ss_pred -HccCCCCCEEECCCCC-CCCcCHHHhccccccccccCCccEEECcCC-cCCcc-C-hhhhhccCCCcCEEECCCCCCC-
Confidence 1124667777776643 3333221111 012236777777777 56655 2 2333 6777777777776541
Q ss_pred HHhhcCcccccCCCCcccEeeccC------CccccccCCCCccCCCCcceEeecccccccccCcCCcCCcCcceeechHH
Q 001999 887 EIVEAGTVLAIGEFPKLKTLELID------LPKLSTICNSLLLPWPSLETIKIKACNALKSFPSTFKNTTMLKVIKGDQA 960 (984)
Q Consensus 887 ~i~~~~~~~~~~~~~~L~~L~L~~------c~~L~~i~~~~~~~l~sL~~L~i~~C~~L~~lp~~~~~l~~L~~l~~~~~ 960 (984)
+++..+..+++|++|+|++ +.-...++. .+..+++|++|++++|+ ++.+|..+. ++|+.|+...+
T Consensus 527 -----~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~-~l~~l~~L~~L~Ls~N~-l~~ip~~~~--~~L~~L~Ls~N 597 (636)
T 4eco_A 527 -----KFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPE-GITLCPSLTQLQIGSND-IRKVNEKIT--PNISVLDIKDN 597 (636)
T ss_dssp -----SCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCT-TGGGCSSCCEEECCSSC-CCBCCSCCC--TTCCEEECCSC
T ss_pred -----CcChhhhcCCCCCEEECCCCcccccCcccccChH-HHhcCCCCCEEECCCCc-CCccCHhHh--CcCCEEECcCC
Confidence 2444555677777777743 222334444 55667777777777766 466776544 56777776666
Q ss_pred hhhhccc
Q 001999 961 WFDQLEW 967 (984)
Q Consensus 961 ~w~~l~~ 967 (984)
-|..+..
T Consensus 598 ~l~~~~~ 604 (636)
T 4eco_A 598 PNISIDL 604 (636)
T ss_dssp TTCEEEC
T ss_pred CCccccH
Confidence 5554443
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.93 E-value=9.9e-25 Score=263.11 Aligned_cols=437 Identities=14% Similarity=0.084 Sum_probs=229.8
Q ss_pred hccCeEeeeccCCCCCCC--CCCCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccC-CcchhcccccCeEe
Q 001999 497 WKDTKKLSLFGFPSSTLP--DMPNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCL-PPSISRLINLNALF 573 (984)
Q Consensus 497 ~~~~r~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~ 573 (984)
...+++|.+++|.+..++ .+..+++|++|++++|.+..+++..|.++++|++|+|++|.+..+ |..++.+++|++|+
T Consensus 32 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 111 (606)
T 3t6q_A 32 PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLF 111 (606)
T ss_dssp CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEE
T ss_pred CCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEee
Confidence 357899999999888764 367889999999999988887666688999999999999988876 66888999999999
Q ss_pred cCCCcccccC-chhhhccCCCcEEEecCccccccc-hhhhccCCCCeeecccccccCccccCCCCCCcccchhhhhcccc
Q 001999 574 LRSCSLLFQL-PKEIRYLQKLEILDVRHTRIQCLP-SEIGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSNIISKLCL 651 (984)
Q Consensus 574 L~~c~~l~~l-p~~i~~L~~L~~L~l~~~~l~~lp-~~~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~~L~~ 651 (984)
+++|. ++.+ |..++++++|++|++++|.+..++ ..+..+++|++|+++ ++... .++...++.+++
T Consensus 112 L~~n~-i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-----~n~l~-------~~~~~~~~~l~~ 178 (606)
T 3t6q_A 112 FIQTG-ISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQ-----NNAIH-------YLSKEDMSSLQQ 178 (606)
T ss_dssp CTTSC-CSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECC-----SSCCC-------EECHHHHHTTTT
T ss_pred ccccC-cccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcc-----cCccc-------ccChhhhhhhcc
Confidence 99865 5554 567888999999999999888653 334458899999998 54433 344455777888
Q ss_pred cc--ceeeeecCCchhH---Hhh---------hhhhhHHHhhccCCCceEEEecCCcchhh----------hh----hhc
Q 001999 652 LE--ELIIEVLDPSDRR---WKQ---------NVESIAGEIAALEQLTTLHFYFPTIKCFK----------TF----INR 703 (984)
Q Consensus 652 L~--~L~l~~~~~~~~~---~~~---------~~~~~~~~l~~l~~L~~L~l~~~~~~~~~----------~~----~~~ 703 (984)
|+ .|++.+....... +.. ........+..+.++....+......... .. ...
T Consensus 179 L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~ 258 (606)
T 3t6q_A 179 ATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVES 258 (606)
T ss_dssp CCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEE
T ss_pred cceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeE
Confidence 87 4555432221100 000 00011111222222222222111100000 00 000
Q ss_pred ccccC----CCCCC--CCCCcceeEEEecccCccceeccccccccccccceEEc-cCCCCchhHHHHHhhhccceeeccc
Q 001999 704 RKSVN----GNKSR--HGDNFKSFNIVVGYPQSTSLLAGFDVSEWSAEKHLRFS-AGVEEIPGEFLTILKQAYSFELIGS 776 (984)
Q Consensus 704 ~~~~~----~~~~~--~~~~~l~~~~~~g~~~~~~~l~~~~~p~~~~L~~L~l~-~~~~~l~~~~~~~l~~L~~L~l~~~ 776 (984)
..+.. ...+. .....++...+.++. ...+... +..++.|+.|.+. +....+.+..+..+++|+.|.+.++
T Consensus 259 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~lp~~--l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 335 (606)
T 3t6q_A 259 INLQKHYFFNISSNTFHCFSGLQELDLTATH-LSELPSG--LVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGN 335 (606)
T ss_dssp EECTTCCCSSCCTTTTTTCTTCSEEECTTSC-CSCCCSS--CCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSC
T ss_pred EEeecCccCccCHHHhccccCCCEEeccCCc-cCCCChh--hcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCC
Confidence 00000 00000 001112222222211 1111111 2223345666665 2233443334445556666666555
Q ss_pred cccccccccccccccccCeeEEcccCCceEEec--C-C--------------------CCCcccCCCcceeecccccccc
Q 001999 777 QYAVNLSNFGVDNLVRLQACVIEDCNEMTSIID--G-N--------------------HRGVVPFQGLNNLHIKNLPKLM 833 (984)
Q Consensus 777 ~~~~~l~~~~~~~l~~L~~L~l~~~~~l~~i~~--~-~--------------------~~~~~~~~~L~~L~l~~~~~l~ 833 (984)
.....++...+.++++|+.|+++++. +..+.. . . ......+++|+.|+++++.-..
T Consensus 336 ~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 414 (606)
T 3t6q_A 336 TKRLELGTGCLENLENLRELDLSHDD-IETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKV 414 (606)
T ss_dssp SSCCBCCSSTTTTCTTCCEEECCSSC-CCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEEC
T ss_pred CcccccchhhhhccCcCCEEECCCCc-cccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCC
Confidence 44434443334455566666655532 222220 0 0 0011123444444444432111
Q ss_pred cccccccccCcccccceeeecccccccccCcHHHHhhcccccEEeecccchhHHHhhcCcccccCCCCcccEeeccCCcc
Q 001999 834 HIWVGPIASGSLNSLRTLRVKICHSIKTLFSKEMVAQLNELQDLQVEDCQMIEEIVEAGTVLAIGEFPKLKTLELIDLPK 913 (984)
Q Consensus 834 ~i~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~L~~L~L~~c~~ 913 (984)
... +.....+++|+.|++++| .+... ++..+..+++|++|++++|......+ .....+..+++|++|+|++| .
T Consensus 415 ~~~--~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~~~~l~~L~~L~Ls~n-~ 487 (606)
T 3t6q_A 415 KDA--QSPFQNLHLLKVLNLSHS-LLDIS-SEQLFDGLPALQHLNLQGNHFPKGNI--QKTNSLQTLGRLEILVLSFC-D 487 (606)
T ss_dssp CTT--CCTTTTCTTCCEEECTTC-CCBTT-CTTTTTTCTTCCEEECTTCBCGGGEE--CSSCGGGGCTTCCEEECTTS-C
T ss_pred ccc--chhhhCcccCCEEECCCC-ccCCc-CHHHHhCCCCCCEEECCCCCCCcccc--ccchhhccCCCccEEECCCC-c
Confidence 100 011234566666666666 45444 23445566666666666665421000 11123556677777777775 3
Q ss_pred ccccCCCCccCCCCcceEeecccccccccCcCCcCCcCcceeech
Q 001999 914 LSTICNSLLLPWPSLETIKIKACNALKSFPSTFKNTTMLKVIKGD 958 (984)
Q Consensus 914 L~~i~~~~~~~l~sL~~L~i~~C~~L~~lp~~~~~l~~L~~l~~~ 958 (984)
++.++...+..+++|+.|++++|+--...|..+.++++| .++..
T Consensus 488 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~ 531 (606)
T 3t6q_A 488 LSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLA 531 (606)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECC
T ss_pred cCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECc
Confidence 555543356667777777777776334445666666666 66544
No 8
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.92 E-value=1.1e-24 Score=260.81 Aligned_cols=419 Identities=19% Similarity=0.147 Sum_probs=261.9
Q ss_pred hccCeEeeeccCCCCCCC--CCCCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCC-cchhcccccCeEe
Q 001999 497 WKDTKKLSLFGFPSSTLP--DMPNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLP-PSISRLINLNALF 573 (984)
Q Consensus 497 ~~~~r~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~~L~~L~ 573 (984)
...+++|++++|.+..++ .+..+++|++|++++|.+..++...|.++++|++|+|++|.++.+| ..++.+.+|++|+
T Consensus 27 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (570)
T ss_dssp CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence 357889999988887765 4678899999999999888887777888999999999999888774 6788999999999
Q ss_pred cCCCcccccCch-hhhccCCCcEEEecCccccc--cchhhhccCCCCeeecccccccCccccCCCCCCcccchhhhhccc
Q 001999 574 LRSCSLLFQLPK-EIRYLQKLEILDVRHTRIQC--LPSEIGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSNIISKLC 650 (984)
Q Consensus 574 L~~c~~l~~lp~-~i~~L~~L~~L~l~~~~l~~--lp~~~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~~L~ 650 (984)
+++|. ++.+|. .++++++|++|++++|.+.. +|..++++++|++|+++ ++.... ++...++.++
T Consensus 107 L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~-----~n~l~~-------~~~~~~~~l~ 173 (570)
T 2z63_A 107 AVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS-----SNKIQS-------IYCTDLRVLH 173 (570)
T ss_dssp CTTSC-CCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECT-----TSCCCE-------ECGGGGHHHH
T ss_pred ccccc-cccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCc-----CCccce-------ecHHHccchh
Confidence 99864 666665 58889999999999998874 68889999999999988 443221 3333345555
Q ss_pred cc----cceeeeecCCchhH---H------------h-hhhhhhHHHhhccCCCc-------------------------
Q 001999 651 LL----EELIIEVLDPSDRR---W------------K-QNVESIAGEIAALEQLT------------------------- 685 (984)
Q Consensus 651 ~L----~~L~l~~~~~~~~~---~------------~-~~~~~~~~~l~~l~~L~------------------------- 685 (984)
+| ..|++......... + + .........+..+++++
T Consensus 174 ~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~ 253 (570)
T 2z63_A 174 QMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEG 253 (570)
T ss_dssp TCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGG
T ss_pred ccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhcc
Confidence 54 33333321111000 0 0 00111222333333333
Q ss_pred --------------------------------eEEEecCCcchhhhhhhcccccCCCCCCCCCCcceeEEEecccCccce
Q 001999 686 --------------------------------TLHFYFPTIKCFKTFINRRKSVNGNKSRHGDNFKSFNIVVGYPQSTSL 733 (984)
Q Consensus 686 --------------------------------~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~ 733 (984)
.|+++.+....++.... .. .+....+.++.-.
T Consensus 254 l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~------------~~-~L~~L~l~~n~~~--- 317 (570)
T 2z63_A 254 LCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY------------NF-GWQHLELVNCKFG--- 317 (570)
T ss_dssp GGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCS------------CC-CCSEEEEESCBCS---
T ss_pred ccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhc------------cC-CccEEeeccCccc---
Confidence 33333222111111000 00 1112222221111
Q ss_pred eccccccccccccceEEccCCCCchhHHHHHhhhccceeecccccccccc--ccccccccccCeeEEcccCCceEEecCC
Q 001999 734 LAGFDVSEWSAEKHLRFSAGVEEIPGEFLTILKQAYSFELIGSQYAVNLS--NFGVDNLVRLQACVIEDCNEMTSIIDGN 811 (984)
Q Consensus 734 l~~~~~p~~~~L~~L~l~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~l~--~~~~~~l~~L~~L~l~~~~~l~~i~~~~ 811 (984)
.+....++.|+.|.+. ++..........+++|+.|++.++.... .. ...+.++++|+.|+++++. +..++..
T Consensus 318 --~l~~~~l~~L~~L~l~-~n~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~- 391 (570)
T 2z63_A 318 --QFPTLKLKSLKRLTFT-SNKGGNAFSEVDLPSLEFLDLSRNGLSF-KGCCSQSDFGTTSLKYLDLSFNG-VITMSSN- 391 (570)
T ss_dssp --SCCBCBCSSCCEEEEE-SCBSCCBCCCCBCTTCCEEECCSSCCBE-EEEEEHHHHTCSCCCEEECCSCS-EEEEEEE-
T ss_pred --ccCcccccccCEEeCc-CCccccccccccCCCCCEEeCcCCccCc-cccccccccccCccCEEECCCCc-ccccccc-
Confidence 0001123345666665 2221111111345666667665553221 11 1134567888888888754 4444432
Q ss_pred CCCcccCCCcceeecccccccccccccccccCcccccceeeecccccccccCcHHHHhhcccccEEeecccchhHHHhhc
Q 001999 812 HRGVVPFQGLNNLHIKNLPKLMHIWVGPIASGSLNSLRTLRVKICHSIKTLFSKEMVAQLNELQDLQVEDCQMIEEIVEA 891 (984)
Q Consensus 812 ~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~ 891 (984)
...+++|+.|+++++.-.... . ......+++|+.|++++| .+... .+..+..+++|++|++++|.... .
T Consensus 392 ---~~~l~~L~~L~l~~n~l~~~~-~-~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n~l~~----~ 460 (570)
T 2z63_A 392 ---FLGLEQLEHLDFQHSNLKQMS-E-FSVFLSLRNLIYLDISHT-HTRVA-FNGIFNGLSSLEVLKMAGNSFQE----N 460 (570)
T ss_dssp ---EETCTTCCEEECTTSEEESCT-T-SCTTTTCTTCCEEECTTS-CCEEC-CTTTTTTCTTCCEEECTTCEEGG----G
T ss_pred ---ccccCCCCEEEccCCcccccc-c-hhhhhcCCCCCEEeCcCC-ccccc-chhhhhcCCcCcEEECcCCcCcc----c
Confidence 234688999999886432211 1 112357899999999999 67766 34667889999999999997531 2
Q ss_pred CcccccCCCCcccEeeccCCccccccCCCCccCCCCcceEeecccccccccC-cCCcCCcCcceeechHHhhh
Q 001999 892 GTVLAIGEFPKLKTLELIDLPKLSTICNSLLLPWPSLETIKIKACNALKSFP-STFKNTTMLKVIKGDQAWFD 963 (984)
Q Consensus 892 ~~~~~~~~~~~L~~L~L~~c~~L~~i~~~~~~~l~sL~~L~i~~C~~L~~lp-~~~~~l~~L~~l~~~~~~w~ 963 (984)
.++..+..+++|++|+|++|. ++.+....+..+++|++|++++|+ ++.+| ..+.++++|+.++...+.|.
T Consensus 461 ~~p~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 531 (570)
T 2z63_A 461 FLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMASNQ-LKSVPDGIFDRLTSLQKIWLHTNPWD 531 (570)
T ss_dssp EECSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cchhhhhcccCCCEEECCCCc-cccCChhhhhcccCCCEEeCCCCc-CCCCCHHHhhcccCCcEEEecCCccc
Confidence 355677899999999999975 666644367889999999999986 77765 45788999999998766544
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.92 E-value=2.5e-24 Score=259.59 Aligned_cols=419 Identities=16% Similarity=0.133 Sum_probs=258.7
Q ss_pred eEeeeccCCCCCCCCCCCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccC-CcchhcccccCeEecCCCcc
Q 001999 501 KKLSLFGFPSSTLPDMPNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCL-PPSISRLINLNALFLRSCSL 579 (984)
Q Consensus 501 r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~c~~ 579 (984)
+.+...++.+..+|.. -.++|++|++++|.+..++...|.++++|++|+|++|.++.+ |..++++++|++|+|++|.
T Consensus 14 ~~~~c~~~~l~~ip~~-~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~- 91 (606)
T 3vq2_A 14 ITYQCMDQKLSKVPDD-IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP- 91 (606)
T ss_dssp TEEECTTSCCSSCCTT-SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-
T ss_pred CceEccCCCcccCCCC-CCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCc-
Confidence 4677777888888763 238999999999999999887799999999999999999987 6679999999999999976
Q ss_pred cccC-chhhhccCCCcEEEecCccccccc-hhhhccCCCCeeecccccccCccccCCCCCCcccchhhhhccccccceee
Q 001999 580 LFQL-PKEIRYLQKLEILDVRHTRIQCLP-SEIGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSNIISKLCLLEELII 657 (984)
Q Consensus 580 l~~l-p~~i~~L~~L~~L~l~~~~l~~lp-~~~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~~L~~L~~L~l 657 (984)
++.+ |..++++++|++|++++|.+..+| ..++++++|++|+++ ++.... ..+|. .++++++|++|++
T Consensus 92 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-----~n~l~~-----~~lp~-~~~~l~~L~~L~L 160 (606)
T 3vq2_A 92 IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVA-----HNFIHS-----CKLPA-YFSNLTNLVHVDL 160 (606)
T ss_dssp CCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECC-----SSCCCC-----CCCCG-GGGTCTTCCEEEC
T ss_pred ccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCC-----CCcccc-----eechH-hHhhcCCCCEEEc
Confidence 5555 888999999999999999999877 669999999999999 554332 12564 4899999999999
Q ss_pred eecCCchhHHhhhhhhhHHHhhccCC-CceEEEecCCcchhhh-------------------------hhhcccccC---
Q 001999 658 EVLDPSDRRWKQNVESIAGEIAALEQ-LTTLHFYFPTIKCFKT-------------------------FINRRKSVN--- 708 (984)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~-------------------------~~~~~~~~~--- 708 (984)
.+...... .......+..++. +..|+++.+....++. .........
T Consensus 161 s~n~l~~~-----~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~ 235 (606)
T 3vq2_A 161 SYNYIQTI-----TVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHR 235 (606)
T ss_dssp CSSCCCEE-----CTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEE
T ss_pred cCCcceec-----ChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhcccccccccc
Confidence 87544321 1112223333332 2344444433322211 110000000
Q ss_pred ---CC---------CCC---CCCCcceeEE--EecccCccceeccccccccccccceEEc-cCCCCchhHHHHHhhhccc
Q 001999 709 ---GN---------KSR---HGDNFKSFNI--VVGYPQSTSLLAGFDVSEWSAEKHLRFS-AGVEEIPGEFLTILKQAYS 770 (984)
Q Consensus 709 ---~~---------~~~---~~~~~l~~~~--~~g~~~~~~~l~~~~~p~~~~L~~L~l~-~~~~~l~~~~~~~l~~L~~ 770 (984)
.. .+. .....+.... +........... .+..+..++.|.+. +....++ .+..+++|+.
T Consensus 236 l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~l~--~l~~~~~L~~ 311 (606)
T 3vq2_A 236 LILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIV--KFHCLANVSAMSLAGVSIKYLE--DVPKHFKWQS 311 (606)
T ss_dssp EEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGG--SCGGGTTCSEEEEESCCCCCCC--CCCTTCCCSE
T ss_pred ccccccccCCcccccChHHhhhhhhccHhheecccccccccccc--ccccCCCCCEEEecCccchhhh--hccccccCCE
Confidence 00 000 0000000000 000001111111 13344567777777 2334444 2344567888
Q ss_pred eeeccccccccccccccccccccCeeEEcccCCceEEecCCCCCcccCCCcceeeccccccccccc--------------
Q 001999 771 FELIGSQYAVNLSNFGVDNLVRLQACVIEDCNEMTSIIDGNHRGVVPFQGLNNLHIKNLPKLMHIW-------------- 836 (984)
Q Consensus 771 L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~i~-------------- 836 (984)
|.+.++.. ..++.+ .+++|+.|+++++..+..+. ...+++|+.|+++++. +..+.
T Consensus 312 L~l~~n~l-~~lp~~---~l~~L~~L~l~~n~~~~~~~------~~~l~~L~~L~ls~n~-l~~~~~~~~~~~~~~~L~~ 380 (606)
T 3vq2_A 312 LSIIRCQL-KQFPTL---DLPFLKSLTLTMNKGSISFK------KVALPSLSYLDLSRNA-LSFSGCCSYSDLGTNSLRH 380 (606)
T ss_dssp EEEESCCC-SSCCCC---CCSSCCEEEEESCSSCEECC------CCCCTTCCEEECCSSC-EEEEEECCHHHHCCSCCCE
T ss_pred EEcccccC-cccccC---CCCccceeeccCCcCccchh------hccCCCCCEEECcCCc-cCCCcchhhhhccCCcccE
Confidence 88877766 666643 67888888888775544331 1124555555555432 11110
Q ss_pred ---------ccccccCcccccceeeecccccccccCcHHHHhhcccccEEeecccchhHHHhhcCcccccCCCCcccEee
Q 001999 837 ---------VGPIASGSLNSLRTLRVKICHSIKTLFSKEMVAQLNELQDLQVEDCQMIEEIVEAGTVLAIGEFPKLKTLE 907 (984)
Q Consensus 837 ---------~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~L~~L~ 907 (984)
..+.....+++|+.|++++| .+....+...+..+++|++|++++|... ...+..+..+++|++|+
T Consensus 381 L~L~~n~l~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~-----~~~~~~~~~l~~L~~L~ 454 (606)
T 3vq2_A 381 LDLSFNGAIIMSANFMGLEELQHLDFQHS-TLKRVTEFSAFLSLEKLLYLDISYTNTK-----IDFDGIFLGLTSLNTLK 454 (606)
T ss_dssp EECCSCSEEEECCCCTTCTTCCEEECTTS-EEESTTTTTTTTTCTTCCEEECTTSCCE-----ECCTTTTTTCTTCCEEE
T ss_pred eECCCCccccchhhccCCCCCCeeECCCC-ccCCccChhhhhccccCCEEECcCCCCC-----ccchhhhcCCCCCCEEE
Confidence 00112245566666666666 4555533345667777777777776642 12334566778888888
Q ss_pred ccCCccccc--cCCCCccCCCCcceEeecccccccccCcCCcCCcCcceeechHH
Q 001999 908 LIDLPKLST--ICNSLLLPWPSLETIKIKACNALKSFPSTFKNTTMLKVIKGDQA 960 (984)
Q Consensus 908 L~~c~~L~~--i~~~~~~~l~sL~~L~i~~C~~L~~lp~~~~~l~~L~~l~~~~~ 960 (984)
+++|. ++. ++. .+..+++|+.|++++|.--...|..+.++++|+.|+...+
T Consensus 455 l~~n~-l~~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 507 (606)
T 3vq2_A 455 MAGNS-FKDNTLSN-VFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN 507 (606)
T ss_dssp CTTCE-EGGGEECS-CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCCCc-CCCcchHH-hhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCC
Confidence 88864 443 444 5677888888888888633344666788888888887644
No 10
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.92 E-value=9.1e-25 Score=269.69 Aligned_cols=177 Identities=20% Similarity=0.230 Sum_probs=110.7
Q ss_pred hhccCeEeeeccCCCCC-CCCCCCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCcc-CCcchhcccccCeEe
Q 001999 496 EWKDTKKLSLFGFPSST-LPDMPNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRC-LPPSISRLINLNALF 573 (984)
Q Consensus 496 ~~~~~r~l~l~~~~~~~-l~~~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~-lp~~i~~l~~L~~L~ 573 (984)
...+++.|.+.+|.+.. +|.+..+++|++|++++|.+....+..+.++++|++|++++|.+.. +|.. .+++|++|+
T Consensus 198 ~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~ 275 (768)
T 3rgz_A 198 RCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLS 275 (768)
T ss_dssp TCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEE
T ss_pred cCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEE
Confidence 44567777777777665 4446677777777777777764433446777777777777777663 3332 667777777
Q ss_pred cCCCcccccCchhhhcc-CCCcEEEecCcccc-ccchhhhccCCCCeeecccccccCccccCCCCCCcccchhhhhcccc
Q 001999 574 LRSCSLLFQLPKEIRYL-QKLEILDVRHTRIQ-CLPSEIGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSNIISKLCL 651 (984)
Q Consensus 574 L~~c~~l~~lp~~i~~L-~~L~~L~l~~~~l~-~lp~~~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~~L~~ 651 (984)
+++|.....+|..+..+ ++|++|++++|.+. .+|..++.+++|++|+++ ++.... .+|...++++++
T Consensus 276 L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~-----~n~l~~------~ip~~~l~~l~~ 344 (768)
T 3rgz_A 276 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALS-----SNNFSG------ELPMDTLLKMRG 344 (768)
T ss_dssp CCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECC-----SSEEEE------ECCHHHHTTCTT
T ss_pred CcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECC-----CCcccC------cCCHHHHhcCCC
Confidence 77765444666666554 77777777777666 566667777777777776 444332 355555667777
Q ss_pred ccceeeeecCCchhHHhhhhhhhHHHhhccC-CCceEEEecCC
Q 001999 652 LEELIIEVLDPSDRRWKQNVESIAGEIAALE-QLTTLHFYFPT 693 (984)
Q Consensus 652 L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~ 693 (984)
|++|++...... ...+..+..+. +|+.|+++.+.
T Consensus 345 L~~L~Ls~n~l~--------~~~p~~l~~l~~~L~~L~Ls~N~ 379 (768)
T 3rgz_A 345 LKVLDLSFNEFS--------GELPESLTNLSASLLTLDLSSNN 379 (768)
T ss_dssp CCEEECCSSEEE--------ECCCTTHHHHTTTCSEEECCSSE
T ss_pred CCEEeCcCCccC--------ccccHHHHhhhcCCcEEEccCCC
Confidence 777776653221 12333444444 56666665443
No 11
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.92 E-value=2.6e-25 Score=272.22 Aligned_cols=139 Identities=19% Similarity=0.264 Sum_probs=103.4
Q ss_pred CcchHhhcCCCccEEeccCCCCcc------------------CCcchh--cccccCeEecCCCcccccCchhhhccCCCc
Q 001999 535 LPMSFFEYMCHLQLLDLHDTSIRC------------------LPPSIS--RLINLNALFLRSCSLLFQLPKEIRYLQKLE 594 (984)
Q Consensus 535 l~~~~~~~l~~Lr~L~L~~~~i~~------------------lp~~i~--~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~ 594 (984)
+|.. |+++++|++|+|++|.++. +|..++ ++++|++|+|++|.....+|..+++|++|+
T Consensus 440 IP~~-l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~ 518 (876)
T 4ecn_A 440 ISKA-IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ 518 (876)
T ss_dssp ECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCC
T ss_pred hhHH-HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCC
Confidence 6665 7888888888888888887 888877 888888888888877778888888888888
Q ss_pred EEEecCcc-ccc--cchhhhccC-------CCCeeecccccccCccccCCCCCCcccch-hhhhccccccceeeeecCCc
Q 001999 595 ILDVRHTR-IQC--LPSEIGQLI-------KLKCLRVSWVENVGNHTHAGAWPGEMISS-NIISKLCLLEELIIEVLDPS 663 (984)
Q Consensus 595 ~L~l~~~~-l~~--lp~~~~~L~-------~L~~L~l~~~~~~~~~~l~~~~~~~~ip~-~~l~~L~~L~~L~l~~~~~~ 663 (984)
+|++++|+ ++. +|..+++++ +|++|+++ ++... .+|. +.++++++|+.|++.+....
T Consensus 519 ~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls-----~N~L~-------~ip~~~~l~~L~~L~~L~Ls~N~l~ 586 (876)
T 4ecn_A 519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMG-----YNNLE-------EFPASASLQKMVKLGLLDCVHNKVR 586 (876)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECC-----SSCCC-------BCCCHHHHTTCTTCCEEECTTSCCC
T ss_pred EEECcCCCCcccccchHHHHhhhhcccccCCccEEEee-----CCcCC-------ccCChhhhhcCCCCCEEECCCCCcc
Confidence 88888887 774 787777666 88888887 44332 3665 24788888888888753322
Q ss_pred hhHHhhhhhhhHHHhhccCCCceEEEecCCcch
Q 001999 664 DRRWKQNVESIAGEIAALEQLTTLHFYFPTIKC 696 (984)
Q Consensus 664 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 696 (984)
.++ .+..+++|+.|+++.+....
T Consensus 587 ---------~lp-~~~~L~~L~~L~Ls~N~l~~ 609 (876)
T 4ecn_A 587 ---------HLE-AFGTNVKLTDLKLDYNQIEE 609 (876)
T ss_dssp ---------BCC-CCCTTSEESEEECCSSCCSC
T ss_pred ---------cch-hhcCCCcceEEECcCCcccc
Confidence 233 66777888888887665543
No 12
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.92 E-value=1.3e-24 Score=268.16 Aligned_cols=352 Identities=17% Similarity=0.149 Sum_probs=207.8
Q ss_pred hccCeEeeeccCCCCCCCCCCCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCc-cCCcchhcccccCeEecC
Q 001999 497 WKDTKKLSLFGFPSSTLPDMPNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIR-CLPPSISRLINLNALFLR 575 (984)
Q Consensus 497 ~~~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~-~lp~~i~~l~~L~~L~L~ 575 (984)
.++++.|.+.+|.+........+++|++|++++|.+...++. +.++++|++|++++|.++ .+|..++.+++|++|+++
T Consensus 177 l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls 255 (768)
T 3rgz_A 177 CGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNIS 255 (768)
T ss_dssp CTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECC
T ss_pred CCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECC
Confidence 356778888877776655557788888888888888765555 788888889999888887 457788888889999988
Q ss_pred CCcccccCchhhhccCCCcEEEecCcccc-ccchhhhcc-CCCCeeecccccccCccccCCCCCCcccchhhhhcccccc
Q 001999 576 SCSLLFQLPKEIRYLQKLEILDVRHTRIQ-CLPSEIGQL-IKLKCLRVSWVENVGNHTHAGAWPGEMISSNIISKLCLLE 653 (984)
Q Consensus 576 ~c~~l~~lp~~i~~L~~L~~L~l~~~~l~-~lp~~~~~L-~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~~L~~L~ 653 (984)
+|.....+|.. .+++|++|++++|.+. .+|..+..+ ++|++|+++ ++.... .+|. .++++++|+
T Consensus 256 ~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls-----~n~l~~------~~p~-~~~~l~~L~ 321 (768)
T 3rgz_A 256 SNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLS-----GNHFYG------AVPP-FFGSCSLLE 321 (768)
T ss_dssp SSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECC-----SSEEEE------CCCG-GGGGCTTCC
T ss_pred CCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECc-----CCcCCC------ccch-HHhcCCCcc
Confidence 87655556654 7888999999988887 788887765 899999998 555443 3453 489999999
Q ss_pred ceeeeecCCchhHHhhhhhhhHH-HhhccCCCceEEEecCCcc-hhhhhhhcc--ccc-----C----CCCCCCC----C
Q 001999 654 ELIIEVLDPSDRRWKQNVESIAG-EIAALEQLTTLHFYFPTIK-CFKTFINRR--KSV-----N----GNKSRHG----D 716 (984)
Q Consensus 654 ~L~l~~~~~~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~-~~~~~~~~~--~~~-----~----~~~~~~~----~ 716 (984)
+|++.+.... ..++. .+..+++|+.|+++.+... .++..+... .+. . +..|... .
T Consensus 322 ~L~L~~n~l~--------~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~ 393 (768)
T 3rgz_A 322 SLALSSNNFS--------GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK 393 (768)
T ss_dssp EEECCSSEEE--------EECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTT
T ss_pred EEECCCCccc--------CcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhccc
Confidence 9999864332 12333 4888999999999977654 222221111 000 0 0001100 1
Q ss_pred CcceeEEEecccCccceeccccccccccccceEEc-cCCCCchhHHHHHhhhccceeeccccccccccccccccccccCe
Q 001999 717 NFKSFNIVVGYPQSTSLLAGFDVSEWSAEKHLRFS-AGVEEIPGEFLTILKQAYSFELIGSQYAVNLSNFGVDNLVRLQA 795 (984)
Q Consensus 717 ~~l~~~~~~g~~~~~~~l~~~~~p~~~~L~~L~l~-~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~ 795 (984)
..++...+.++.-...+.. .+..++.|+.|.++ +...+..+..+..+++|+.|.+.++.....++. .+..+++|+.
T Consensus 394 ~~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~ 470 (768)
T 3rgz_A 394 NTLQELYLQNNGFTGKIPP--TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ-ELMYVKTLET 470 (768)
T ss_dssp CCCCEEECCSSEEEEECCG--GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCG-GGGGCTTCCE
T ss_pred CCccEEECCCCccccccCH--HHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCH-HHcCCCCceE
Confidence 1122222222111000000 12233446666666 222222223344556666666665554444443 3555666667
Q ss_pred eEEcccCCceEEecCCCCCcccCCCcceeecccccccccccccccccCcccccceeeecccccccccCcHHHHhhccccc
Q 001999 796 CVIEDCNEMTSIIDGNHRGVVPFQGLNNLHIKNLPKLMHIWVGPIASGSLNSLRTLRVKICHSIKTLFSKEMVAQLNELQ 875 (984)
Q Consensus 796 L~l~~~~~l~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~l~~l~~L~ 875 (984)
|+++++.-...++. ....+++|+.|+++++.-...+ +...+.+++|+.|++++| .+.... +..+..+++|+
T Consensus 471 L~L~~N~l~~~~p~----~l~~l~~L~~L~L~~N~l~~~~---p~~~~~l~~L~~L~L~~N-~l~~~~-p~~l~~l~~L~ 541 (768)
T 3rgz_A 471 LILDFNDLTGEIPS----GLSNCTNLNWISLSNNRLTGEI---PKWIGRLENLAILKLSNN-SFSGNI-PAELGDCRSLI 541 (768)
T ss_dssp EECCSSCCCSCCCG----GGGGCTTCCEEECCSSCCCSCC---CGGGGGCTTCCEEECCSS-CCEEEC-CGGGGGCTTCC
T ss_pred EEecCCcccCcCCH----HHhcCCCCCEEEccCCccCCcC---ChHHhcCCCCCEEECCCC-cccCcC-CHHHcCCCCCC
Confidence 76666543323322 1223466666666665422222 122245666666666666 444331 24455666666
Q ss_pred EEeecccc
Q 001999 876 DLQVEDCQ 883 (984)
Q Consensus 876 ~L~l~~c~ 883 (984)
.|++++|.
T Consensus 542 ~L~Ls~N~ 549 (768)
T 3rgz_A 542 WLDLNTNL 549 (768)
T ss_dssp EEECCSSE
T ss_pred EEECCCCc
Confidence 66666554
No 13
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.91 E-value=6.9e-24 Score=250.63 Aligned_cols=415 Identities=16% Similarity=0.147 Sum_probs=223.4
Q ss_pred ccCeEeeeccCCCCCCC--CCCCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCCcchhcccccCeEecC
Q 001999 498 KDTKKLSLFGFPSSTLP--DMPNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLPPSISRLINLNALFLR 575 (984)
Q Consensus 498 ~~~r~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~ 575 (984)
+++++|++++|.+..++ .+..+++|++|++++|.+..+++..|.++++|++|+|++|.++.+|.. .+.+|++|+++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~ 98 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLS 98 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEecc
Confidence 34555555555554443 134455555555555555544333345555555555555555555443 45555555555
Q ss_pred CCcccc-cCchhhhccCCCcEEEecCccccccchhhhccCCC--CeeecccccccCccc--cCCCCCCcccchhhhh---
Q 001999 576 SCSLLF-QLPKEIRYLQKLEILDVRHTRIQCLPSEIGQLIKL--KCLRVSWVENVGNHT--HAGAWPGEMISSNIIS--- 647 (984)
Q Consensus 576 ~c~~l~-~lp~~i~~L~~L~~L~l~~~~l~~lp~~~~~L~~L--~~L~l~~~~~~~~~~--l~~~~~~~~ip~~~l~--- 647 (984)
+|.... .+|..++++++|++|++++|.+.. ..+..+++| +.|+++ ++.. .. ..|.. +.
T Consensus 99 ~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~-----~n~l~~~~------~~~~~-l~~l~ 164 (520)
T 2z7x_B 99 FNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLV-----LGETYGEK------EDPEG-LQDFN 164 (520)
T ss_dssp SSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEE-----ECTTTTSS------CCTTT-TTTCC
T ss_pred CCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEee-----cccccccc------ccccc-ccccc
Confidence 543222 234455555555555555554443 233444444 555554 2211 11 11211 22
Q ss_pred -----------------------ccccccceeeeecCCchhHHhhhhhhhHHHhhccCCCceEEEecCCcchhh--hhhh
Q 001999 648 -----------------------KLCLLEELIIEVLDPSDRRWKQNVESIAGEIAALEQLTTLHFYFPTIKCFK--TFIN 702 (984)
Q Consensus 648 -----------------------~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~~~ 702 (984)
++++|+.|++........ +.........+..+++|+.|+++.+...... ....
T Consensus 165 ~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~ 242 (520)
T 2z7x_B 165 TESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNK--CSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQ 242 (520)
T ss_dssp EEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTT--THHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHH
T ss_pred cceEEEEeccCcchhhhhhhhhhcccceeeccccccccccc--cceeecchhhhccccchhhccccccccCHHHHHHHHH
Confidence 244455555543210000 0012223346777888888888755433211 1100
Q ss_pred cccccCCCCCCCCCCcceeEEEecccCccceeccc---cccccccccceEEc-cCCCCchhHHHHHh---hhccceeecc
Q 001999 703 RRKSVNGNKSRHGDNFKSFNIVVGYPQSTSLLAGF---DVSEWSAEKHLRFS-AGVEEIPGEFLTIL---KQAYSFELIG 775 (984)
Q Consensus 703 ~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~l~~~---~~p~~~~L~~L~l~-~~~~~l~~~~~~~l---~~L~~L~l~~ 775 (984)
... ...++...+.++.-...+...+ ....+..|+.+.+. +.. .++...+..+ .+++.|.+.+
T Consensus 243 ~~~----------~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~ 311 (520)
T 2z7x_B 243 LVW----------HTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSG 311 (520)
T ss_dssp HHH----------TSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEES
T ss_pred Hhh----------hCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCC
Confidence 000 0011111121111000000000 01333446666666 233 4553222222 4488888876
Q ss_pred ccccccccccccccccccCeeEEcccCCceEEecCCCCCcccCCCcceeecccccccccccccccccCcccccceeeecc
Q 001999 776 SQYAVNLSNFGVDNLVRLQACVIEDCNEMTSIIDGNHRGVVPFQGLNNLHIKNLPKLMHIWVGPIASGSLNSLRTLRVKI 855 (984)
Q Consensus 776 ~~~~~~l~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~ 855 (984)
+.... .+ ....+++|++|+++++.-...++ .....+++|+.|+++++. +..+...+...+.+++|+.|++++
T Consensus 312 n~l~~-~~--~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~l~~L~~L~Ls~ 383 (520)
T 2z7x_B 312 TRMVH-ML--CPSKISPFLHLDFSNNLLTDTVF----ENCGHLTELETLILQMNQ-LKELSKIAEMTTQMKSLQQLDISQ 383 (520)
T ss_dssp SCCCC-CC--CCSSCCCCCEEECCSSCCCTTTT----TTCCCCSSCCEEECCSSC-CCBHHHHHHHHTTCTTCCEEECCS
T ss_pred Ccccc-cc--chhhCCcccEEEeECCccChhhh----hhhccCCCCCEEEccCCc-cCccccchHHHhhCCCCCEEECCC
Confidence 64322 11 12568999999999865322122 223456899999999864 333222222246789999999999
Q ss_pred cccccc-cCcHHHHhhcccccEEeecccchhHHHhhcCcccccCCC-CcccEeeccCCccccccCCCCccCCCCcceEee
Q 001999 856 CHSIKT-LFSKEMVAQLNELQDLQVEDCQMIEEIVEAGTVLAIGEF-PKLKTLELIDLPKLSTICNSLLLPWPSLETIKI 933 (984)
Q Consensus 856 c~~L~~-l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~-~~L~~L~L~~c~~L~~i~~~~~~~l~sL~~L~i 933 (984)
| .+.. + +...+..+++|++|++++|.....+ + ..+ ++|++|++++| +++.++. ....+++|++|++
T Consensus 384 N-~l~~~l-~~~~~~~l~~L~~L~Ls~N~l~~~~-----~---~~l~~~L~~L~Ls~N-~l~~ip~-~~~~l~~L~~L~L 451 (520)
T 2z7x_B 384 N-SVSYDE-KKGDCSWTKSLLSLNMSSNILTDTI-----F---RCLPPRIKVLDLHSN-KIKSIPK-QVVKLEALQELNV 451 (520)
T ss_dssp S-CCBCCG-GGCSCCCCTTCCEEECCSSCCCGGG-----G---GSCCTTCCEEECCSS-CCCCCCG-GGGGCTTCCEEEC
T ss_pred C-cCCccc-ccchhccCccCCEEECcCCCCCcch-----h---hhhcccCCEEECCCC-cccccch-hhhcCCCCCEEEC
Confidence 9 7777 5 4445678899999999998753221 1 122 79999999996 6888887 6669999999999
Q ss_pred cccccccccCcC-CcCCcCcceeechHHhh
Q 001999 934 KACNALKSFPST-FKNTTMLKVIKGDQAWF 962 (984)
Q Consensus 934 ~~C~~L~~lp~~-~~~l~~L~~l~~~~~~w 962 (984)
++|+ ++.+|.. +..+++|+.++...+.|
T Consensus 452 ~~N~-l~~l~~~~~~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 452 ASNQ-LKSVPDGIFDRLTSLQKIWLHTNPW 480 (520)
T ss_dssp CSSC-CCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCCc-CCccCHHHhccCCcccEEECcCCCC
Confidence 9986 8899987 88899999998765543
No 14
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.91 E-value=8.9e-24 Score=254.77 Aligned_cols=425 Identities=15% Similarity=0.130 Sum_probs=247.0
Q ss_pred eEeeeccCCCCCCCCCCCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccC-CcchhcccccCeEecCCCcc
Q 001999 501 KKLSLFGFPSSTLPDMPNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCL-PPSISRLINLNALFLRSCSL 579 (984)
Q Consensus 501 r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~c~~ 579 (984)
+.+...+..+..+|.. -.++++.|++++|.+..+++..|.++++|++|+|++|.+..+ |..|+++++|++|+|++|..
T Consensus 15 ~~~~c~~~~l~~iP~~-l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 93 (606)
T 3t6q_A 15 KTYNCENLGLNEIPGT-LPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL 93 (606)
T ss_dssp TEEECTTSCCSSCCTT-SCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred ceEECCCCCcccCcCC-CCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcc
Confidence 3556666667777652 124799999999999999776799999999999999999976 77899999999999999865
Q ss_pred cccCchhhhccCCCcEEEecCcccccc-chhhhccCCCCeeecccccccCccccCCCCCCcccchhhhhccccccceeee
Q 001999 580 LFQLPKEIRYLQKLEILDVRHTRIQCL-PSEIGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSNIISKLCLLEELIIE 658 (984)
Q Consensus 580 l~~lp~~i~~L~~L~~L~l~~~~l~~l-p~~~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~~L~~L~~L~l~ 658 (984)
....|..++++++|++|++++|.+..+ |..++.+++|++|+++ ++.... ++...+..+++|++|++.
T Consensus 94 ~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~-----~n~l~~-------~~~~~~~~l~~L~~L~L~ 161 (606)
T 3t6q_A 94 IFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLG-----SNHISS-------IKLPKGFPTEKLKVLDFQ 161 (606)
T ss_dssp SEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECC-----SSCCCC-------CCCCTTCCCTTCCEEECC
T ss_pred cccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECC-----CCcccc-------cCcccccCCcccCEEEcc
Confidence 555688899999999999999999987 5678999999999999 554332 322224459999999998
Q ss_pred ecCCchhHHhhhhhhhHHHhhccCCCc--eEEEecCCcchhhhhhhc-ccccCCCCCC--------CCCCcceeEEE--e
Q 001999 659 VLDPSDRRWKQNVESIAGEIAALEQLT--TLHFYFPTIKCFKTFINR-RKSVNGNKSR--------HGDNFKSFNIV--V 725 (984)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~l~~l~~L~--~L~l~~~~~~~~~~~~~~-~~~~~~~~~~--------~~~~~l~~~~~--~ 725 (984)
+.... ......+..+++|+ .|+++.+.....+..... ..+..-.... ........... .
T Consensus 162 ~n~l~--------~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~ 233 (606)
T 3t6q_A 162 NNAIH--------YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLG 233 (606)
T ss_dssp SSCCC--------EECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECC
T ss_pred cCccc--------ccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheech
Confidence 64432 23356678888888 666665554432211100 0000000000 00000000000 0
Q ss_pred cccC---------------------------ccceeccccccccccccceEEc-cCCCCchhHHHHHhhhccceeecccc
Q 001999 726 GYPQ---------------------------STSLLAGFDVSEWSAEKHLRFS-AGVEEIPGEFLTILKQAYSFELIGSQ 777 (984)
Q Consensus 726 g~~~---------------------------~~~~l~~~~~p~~~~L~~L~l~-~~~~~l~~~~~~~l~~L~~L~l~~~~ 777 (984)
.+.. ...-+....+..++.|+.|.++ +....++.. +..+++|+.|.+.++.
T Consensus 234 ~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~-l~~l~~L~~L~l~~n~ 312 (606)
T 3t6q_A 234 TFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSG-LVGLSTLKKLVLSANK 312 (606)
T ss_dssp CCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSS-CCSCTTCCEEECTTCC
T ss_pred hhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChh-hcccccCCEEECccCC
Confidence 0000 0000000012223334555554 222233221 2233444555544432
Q ss_pred ccccccccccccccccCeeEEcccCCceEEecCCCCCcccCCCcceeecccccccccccccccccCcccccceeeecccc
Q 001999 778 YAVNLSNFGVDNLVRLQACVIEDCNEMTSIIDGNHRGVVPFQGLNNLHIKNLPKLMHIWVGPIASGSLNSLRTLRVKICH 857 (984)
Q Consensus 778 ~~~~l~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~c~ 857 (984)
. ..++...+.++++|+.|+++++.....++... ...+++|+.|+++++. +..+...+.....+++|+.|++++|
T Consensus 313 l-~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~---~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n- 386 (606)
T 3t6q_A 313 F-ENLCQISASNFPSLTHLSIKGNTKRLELGTGC---LENLENLRELDLSHDD-IETSDCCNLQLRNLSHLQSLNLSYN- 386 (606)
T ss_dssp C-SBGGGGCGGGCTTCSEEECCSCSSCCBCCSST---TTTCTTCCEEECCSSC-CCEEEESTTTTTTCTTCCEEECCSC-
T ss_pred c-CcCchhhhhccCcCCEEECCCCCcccccchhh---hhccCcCCEEECCCCc-cccccCcchhcccCCCCCEEECCCC-
Confidence 2 22222234445555555555543322222211 2234666666666643 2222111223356677777777777
Q ss_pred cccccCcHHHHhhcccccEEeecccchhHHHhhcCcccccCCCCcccEeeccCCccccccCCCCccCCCCcceEeecccc
Q 001999 858 SIKTLFSKEMVAQLNELQDLQVEDCQMIEEIVEAGTVLAIGEFPKLKTLELIDLPKLSTICNSLLLPWPSLETIKIKACN 937 (984)
Q Consensus 858 ~L~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~L~~L~L~~c~~L~~i~~~~~~~l~sL~~L~i~~C~ 937 (984)
.+... ++..+..+++|++|++++|.... ......+..+++|++|++++|. ++......+..+++|++|++++|+
T Consensus 387 ~l~~~-~~~~~~~l~~L~~L~l~~n~l~~----~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~ 460 (606)
T 3t6q_A 387 EPLSL-KTEAFKECPQLELLDLAFTRLKV----KDAQSPFQNLHLLKVLNLSHSL-LDISSEQLFDGLPALQHLNLQGNH 460 (606)
T ss_dssp SCEEE-CTTTTTTCTTCSEEECTTCCEEC----CTTCCTTTTCTTCCEEECTTCC-CBTTCTTTTTTCTTCCEEECTTCB
T ss_pred cCCcC-CHHHhcCCccCCeEECCCCcCCC----cccchhhhCcccCCEEECCCCc-cCCcCHHHHhCCCCCCEEECCCCC
Confidence 55555 33556677777777777765421 0112235677788888888754 444433356677888888888876
Q ss_pred cccc--c--CcCCcCCcCcceeechHH
Q 001999 938 ALKS--F--PSTFKNTTMLKVIKGDQA 960 (984)
Q Consensus 938 ~L~~--l--p~~~~~l~~L~~l~~~~~ 960 (984)
+.. + +..+..+++|+.++...+
T Consensus 461 -l~~~~~~~~~~~~~l~~L~~L~Ls~n 486 (606)
T 3t6q_A 461 -FPKGNIQKTNSLQTLGRLEILVLSFC 486 (606)
T ss_dssp -CGGGEECSSCGGGGCTTCCEEECTTS
T ss_pred -CCccccccchhhccCCCccEEECCCC
Confidence 332 2 244667778888777654
No 15
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.91 E-value=2.9e-23 Score=241.33 Aligned_cols=351 Identities=17% Similarity=0.228 Sum_probs=251.5
Q ss_pred hhhhccCeEeeeccCCCCCCCCCCCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCCcchhcccccCeEe
Q 001999 494 EEEWKDTKKLSLFGFPSSTLPDMPNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLPPSISRLINLNALF 573 (984)
Q Consensus 494 ~~~~~~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~ 573 (984)
...+.+++.+.+.++.+..++.+..+++|++|++++|.+..++. +.++++|++|++++|.+..++. ++++++|++|+
T Consensus 42 ~~~l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~ 118 (466)
T 1o6v_A 42 QTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLT 118 (466)
T ss_dssp HHHHHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEE
T ss_pred hhHhccccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh-hcCCCCCCEEE
Confidence 44578999999999999999988899999999999999999887 8999999999999999999877 99999999999
Q ss_pred cCCCcccccCchhhhccCCCcEEEecCccccccchhhhccCCCCeeecccccccCccccCCCCCCcccchhhhhcccccc
Q 001999 574 LRSCSLLFQLPKEIRYLQKLEILDVRHTRIQCLPSEIGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSNIISKLCLLE 653 (984)
Q Consensus 574 L~~c~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~~L~~L~ 653 (984)
+++| .++.+|. ++++++|++|++++|.+..+| .++.+++|++|+++ .. . . .++ .++++++|+
T Consensus 119 L~~n-~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~-----~~-~-~------~~~--~~~~l~~L~ 180 (466)
T 1o6v_A 119 LFNN-QITDIDP-LKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFG-----NQ-V-T------DLK--PLANLTTLE 180 (466)
T ss_dssp CCSS-CCCCCGG-GTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEE-----ES-C-C------CCG--GGTTCTTCC
T ss_pred CCCC-CCCCChH-HcCCCCCCEEECCCCccCCCh-hhccCCcccEeecC-----Cc-c-c------Cch--hhccCCCCC
Confidence 9997 4777776 999999999999999999887 48999999999986 21 1 1 122 278999999
Q ss_pred ceeeeecCCchhHHhhhhhhhHHHhhccCCCceEEEecCCcchhhhhhhcccccCCCCCCCCCCcceeEEEecccCccce
Q 001999 654 ELIIEVLDPSDRRWKQNVESIAGEIAALEQLTTLHFYFPTIKCFKTFINRRKSVNGNKSRHGDNFKSFNIVVGYPQSTSL 733 (984)
Q Consensus 654 ~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~ 733 (984)
.|++.+..... ...+..+++|+.|+++.+.......
T Consensus 181 ~L~l~~n~l~~----------~~~l~~l~~L~~L~l~~n~l~~~~~---------------------------------- 216 (466)
T 1o6v_A 181 RLDISSNKVSD----------ISVLAKLTNLESLIATNNQISDITP---------------------------------- 216 (466)
T ss_dssp EEECCSSCCCC----------CGGGGGCTTCSEEECCSSCCCCCGG----------------------------------
T ss_pred EEECcCCcCCC----------ChhhccCCCCCEEEecCCccccccc----------------------------------
Confidence 99998754431 1247889999999998665443321
Q ss_pred eccccccccccccceEEc-cCCCCchhHHHHHhhhccceeeccccccccccccccccccccCeeEEcccCCceEEecCCC
Q 001999 734 LAGFDVSEWSAEKHLRFS-AGVEEIPGEFLTILKQAYSFELIGSQYAVNLSNFGVDNLVRLQACVIEDCNEMTSIIDGNH 812 (984)
Q Consensus 734 l~~~~~p~~~~L~~L~l~-~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~ 812 (984)
+..++.|+.|.+. +....++. +..+++|+.|++.++.. ..++. +.++++|+.|+++++. +..++.
T Consensus 217 -----~~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l-~~~~~--~~~l~~L~~L~l~~n~-l~~~~~--- 282 (466)
T 1o6v_A 217 -----LGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI-SNLAP--LSGLTKLTELKLGANQ-ISNISP--- 282 (466)
T ss_dssp -----GGGCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECCSSCC-CCCGG--GTTCTTCSEEECCSSC-CCCCGG---
T ss_pred -----ccccCCCCEEECCCCCcccchh--hhcCCCCCEEECCCCcc-ccchh--hhcCCCCCEEECCCCc-cCcccc---
Confidence 1112236666666 22233322 23456666666655532 22222 4567888888887753 333322
Q ss_pred CCcccCCCcceeecccccccccccccccccCcccccceeeecccccccccCcHHHHhhcccccEEeecccchhHHHhhcC
Q 001999 813 RGVVPFQGLNNLHIKNLPKLMHIWVGPIASGSLNSLRTLRVKICHSIKTLFSKEMVAQLNELQDLQVEDCQMIEEIVEAG 892 (984)
Q Consensus 813 ~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~ 892 (984)
...+++|+.|+++++. +..+. +...+++|+.|++++| .+.... .+..+++|++|++++|.. + +
T Consensus 283 --~~~l~~L~~L~L~~n~-l~~~~----~~~~l~~L~~L~L~~n-~l~~~~---~~~~l~~L~~L~l~~n~l-~-----~ 345 (466)
T 1o6v_A 283 --LAGLTALTNLELNENQ-LEDIS----PISNLKNLTYLTLYFN-NISDIS---PVSSLTKLQRLFFYNNKV-S-----D 345 (466)
T ss_dssp --GTTCTTCSEEECCSSC-CSCCG----GGGGCTTCSEEECCSS-CCSCCG---GGGGCTTCCEEECCSSCC-C-----C
T ss_pred --ccCCCccCeEEcCCCc-ccCch----hhcCCCCCCEEECcCC-cCCCch---hhccCccCCEeECCCCcc-C-----C
Confidence 2345788888887763 33321 2356788888888888 677662 266788888888888754 2 1
Q ss_pred cccccCCCCcccEeeccCCccccccCCCCccCCCCcceEeecccccccccCcC
Q 001999 893 TVLAIGEFPKLKTLELIDLPKLSTICNSLLLPWPSLETIKIKACNALKSFPST 945 (984)
Q Consensus 893 ~~~~~~~~~~L~~L~L~~c~~L~~i~~~~~~~l~sL~~L~i~~C~~L~~lp~~ 945 (984)
. ..+..+++|+.|++++|+ ++.+.. ...+++|+.|++++|+ ++.+|..
T Consensus 346 ~-~~l~~l~~L~~L~l~~n~-l~~~~~--~~~l~~L~~L~l~~n~-~~~~p~~ 393 (466)
T 1o6v_A 346 V-SSLANLTNINWLSAGHNQ-ISDLTP--LANLTRITQLGLNDQA-WTNAPVN 393 (466)
T ss_dssp C-GGGTTCTTCCEEECCSSC-CCBCGG--GTTCTTCCEEECCCEE-EECCCBC
T ss_pred c-hhhccCCCCCEEeCCCCc-cCccch--hhcCCCCCEEeccCCc-ccCCchh
Confidence 1 356677888888888764 555544 5677888888888876 5555543
No 16
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.91 E-value=1.4e-23 Score=256.59 Aligned_cols=428 Identities=16% Similarity=0.142 Sum_probs=238.2
Q ss_pred ccCeEeeeccCCCCCCCC--CCCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCCc-chhcccccCeEec
Q 001999 498 KDTKKLSLFGFPSSTLPD--MPNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLPP-SISRLINLNALFL 574 (984)
Q Consensus 498 ~~~r~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~L~~L~L 574 (984)
.++++|.+++|.+..++. +..+++|++|++++|.+..+++..|.++++|++|+|++|.++.+|. .++++.+|++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 678999999998888764 5788999999999998888877778899999999999999988876 5889999999999
Q ss_pred CCCcccccCc-hhhhccCCCcEEEecCcccccc-chhhhccCCCCeeecccccccCccccCCCCCCcccchhhhh--ccc
Q 001999 575 RSCSLLFQLP-KEIRYLQKLEILDVRHTRIQCL-PSEIGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSNIIS--KLC 650 (984)
Q Consensus 575 ~~c~~l~~lp-~~i~~L~~L~~L~l~~~~l~~l-p~~~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~--~L~ 650 (984)
++|. +..+| ..++++++|++|++++|.+... |..++++++|++|+++ ++.... ++...+. .++
T Consensus 105 ~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~-----~n~l~~-------~~~~~~~~~~~~ 171 (680)
T 1ziw_A 105 MSNS-IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLS-----NNKIQA-------LKSEELDIFANS 171 (680)
T ss_dssp CSSC-CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECC-----SSCCCC-------BCHHHHGGGTTC
T ss_pred CCCc-cCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEcc-----CCcccc-------cCHHHhhccccc
Confidence 9875 55555 5788999999999999988755 4557888999999988 443222 3333232 346
Q ss_pred cccceeeeecCCchhH---H-----------------hhhhhhhHHHhhccCCCceEEEecCCcchhhh-hhhcccccCC
Q 001999 651 LLEELIIEVLDPSDRR---W-----------------KQNVESIAGEIAALEQLTTLHFYFPTIKCFKT-FINRRKSVNG 709 (984)
Q Consensus 651 ~L~~L~l~~~~~~~~~---~-----------------~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~~~ 709 (984)
+|+.|++......... + ..........+ ..++|+.|+++.+....... .+.....
T Consensus 172 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l-~~~~L~~L~L~~n~l~~~~~~~~~~l~~--- 247 (680)
T 1ziw_A 172 SLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLEL-ANTSIRNLSLSNSQLSTTSNTTFLGLKW--- 247 (680)
T ss_dssp EESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHH-TTSCCCEEECTTSCCCEECTTTTGGGGG---
T ss_pred cccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHh-hhccccEEEccCCcccccChhHhhccCc---
Confidence 6666666543221100 0 00000111111 23556666665543322110 0000000
Q ss_pred CCCCCCCCcceeEEEecccCccceeccccccccccccceEEc-cCCCCchhHHHHHhhhccceeeccccc--------cc
Q 001999 710 NKSRHGDNFKSFNIVVGYPQSTSLLAGFDVSEWSAEKHLRFS-AGVEEIPGEFLTILKQAYSFELIGSQY--------AV 780 (984)
Q Consensus 710 ~~~~~~~~~l~~~~~~g~~~~~~~l~~~~~p~~~~L~~L~l~-~~~~~l~~~~~~~l~~L~~L~l~~~~~--------~~ 780 (984)
..++...+.++. ... .....+..++.|+.|.+. +.+.++.+..+..+++|+.|.+.++.. +.
T Consensus 248 -------~~L~~L~Ls~n~-l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp 318 (680)
T 1ziw_A 248 -------TNLTMLDLSYNN-LNV-VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLP 318 (680)
T ss_dssp -------SCCCEEECTTSC-CCE-ECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CC
T ss_pred -------CCCCEEECCCCC-cCc-cCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhccccccccc
Confidence 001111111110 000 000012222334555554 222222222233344444444433211 11
Q ss_pred cccccccccccccCeeEEcccCCceEEecCCCCCcccCCCcceeeccccc---------------------------ccc
Q 001999 781 NLSNFGVDNLVRLQACVIEDCNEMTSIIDGNHRGVVPFQGLNNLHIKNLP---------------------------KLM 833 (984)
Q Consensus 781 ~l~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~L~~L~l~~~~---------------------------~l~ 833 (984)
.+....+..+++|+.|+++++. +..++.. ....+++|++|+++++. .+.
T Consensus 319 ~i~~~~~~~l~~L~~L~l~~n~-l~~~~~~---~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~ 394 (680)
T 1ziw_A 319 KIDDFSFQWLKCLEHLNMEDND-IPGIKSN---MFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKIS 394 (680)
T ss_dssp EECTTTTTTCTTCCEEECCSCC-BCCCCTT---TTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCC
T ss_pred ccChhhcccCCCCCEEECCCCc-cCCCChh---HhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCC
Confidence 1122233444555555554432 2222111 11123444444444431 111
Q ss_pred cccccccccCcccccceeeecccccccccCcHHHHhhcccccEEeecccchhHHHhhcCcccccCCCCcccEeeccCCc-
Q 001999 834 HIWVGPIASGSLNSLRTLRVKICHSIKTLFSKEMVAQLNELQDLQVEDCQMIEEIVEAGTVLAIGEFPKLKTLELIDLP- 912 (984)
Q Consensus 834 ~i~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~L~~L~L~~c~- 912 (984)
.+. +.....+++|+.|++++| .+....+...+..+++|++|++++|... .-.+..+..+|+|+.|+++++.
T Consensus 395 ~~~--~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~Ls~n~l~-----~~~~~~~~~~~~L~~L~l~~n~l 466 (680)
T 1ziw_A 395 KIE--SDAFSWLGHLEVLDLGLN-EIGQELTGQEWRGLENIFEIYLSYNKYL-----QLTRNSFALVPSLQRLMLRRVAL 466 (680)
T ss_dssp EEC--TTTTTTCTTCCEEECCSS-CCEEECCSGGGTTCTTCCEEECCSCSEE-----ECCTTTTTTCTTCCEEECTTSCC
T ss_pred eEC--hhhhhCCCCCCEEeCCCC-cCccccCcccccCcccccEEecCCCCcc-----eeChhhhhcCcccccchhccccc
Confidence 111 112245667777777777 4543223345667777777777776532 1122345667888888887754
Q ss_pred -cccccCCCCccCCCCcceEeecccccccccCcC-CcCCcCcceeechHHhhhhc
Q 001999 913 -KLSTICNSLLLPWPSLETIKIKACNALKSFPST-FKNTTMLKVIKGDQAWFDQL 965 (984)
Q Consensus 913 -~L~~i~~~~~~~l~sL~~L~i~~C~~L~~lp~~-~~~l~~L~~l~~~~~~w~~l 965 (984)
.+..++. .+..+++|+.|++++|. ++.+|.. +.++++|+.++...+-...+
T Consensus 467 ~~~~~~p~-~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~Ls~N~l~~~ 519 (680)
T 1ziw_A 467 KNVDSSPS-PFQPLRNLTILDLSNNN-IANINDDMLEGLEKLEILDLQHNNLARL 519 (680)
T ss_dssp BCTTCSSC-TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCGGG
T ss_pred cccccCCc-ccccCCCCCEEECCCCC-CCcCChhhhccccccCEEeCCCCCcccc
Confidence 2234444 56788999999999876 7777654 78889999999887655443
No 17
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.91 E-value=6e-23 Score=251.05 Aligned_cols=203 Identities=15% Similarity=0.212 Sum_probs=102.0
Q ss_pred ccceEEc-cCCCCchhHHHHHhhhccceeeccccccccccccccccccccCeeEEcccCCceEEecCCCCCcccCCCcce
Q 001999 745 EKHLRFS-AGVEEIPGEFLTILKQAYSFELIGSQYAVNLSNFGVDNLVRLQACVIEDCNEMTSIIDGNHRGVVPFQGLNN 823 (984)
Q Consensus 745 L~~L~l~-~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~L~~ 823 (984)
|+.|.++ +...++.+..+..+++|+.|++.++.....++...+.++++|++|+++++. +..+... ....+++|+.
T Consensus 383 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~---~~~~~~~L~~ 458 (680)
T 1ziw_A 383 LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK-YLQLTRN---SFALVPSLQR 458 (680)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCS-EEECCTT---TTTTCTTCCE
T ss_pred CceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCC-cceeChh---hhhcCccccc
Confidence 4444444 222233333334455666666665554444544455566777777776653 3333221 1223466666
Q ss_pred eecccccccccccccccccCcccccceeeecccccccccCcHHHHhhcccccEEeecccchhHHHhhcCc----ccccCC
Q 001999 824 LHIKNLPKLMHIWVGPIASGSLNSLRTLRVKICHSIKTLFSKEMVAQLNELQDLQVEDCQMIEEIVEAGT----VLAIGE 899 (984)
Q Consensus 824 L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~----~~~~~~ 899 (984)
|.+.++.- ..+...+.....+++|+.|++++| +++.+ +...+..+++|++|++++|.. +.+..... ...+..
T Consensus 459 L~l~~n~l-~~~~~~p~~~~~l~~L~~L~Ls~N-~l~~i-~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~~~~~~~~~ 534 (680)
T 1ziw_A 459 LMLRRVAL-KNVDSSPSPFQPLRNLTILDLSNN-NIANI-NDDMLEGLEKLEILDLQHNNL-ARLWKHANPGGPIYFLKG 534 (680)
T ss_dssp EECTTSCC-BCTTCSSCTTTTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSCC-GGGGSTTSTTSCCCTTTT
T ss_pred chhccccc-cccccCCcccccCCCCCEEECCCC-CCCcC-ChhhhccccccCEEeCCCCCc-cccchhhccCCcchhhcC
Confidence 66665431 111111223356677777777777 66666 335566777777777776653 22211111 112445
Q ss_pred CCcccEeeccCCccccccCCCCccCCCCcceEeecccccccccCcC-CcCCcCcceeec
Q 001999 900 FPKLKTLELIDLPKLSTICNSLLLPWPSLETIKIKACNALKSFPST-FKNTTMLKVIKG 957 (984)
Q Consensus 900 ~~~L~~L~L~~c~~L~~i~~~~~~~l~sL~~L~i~~C~~L~~lp~~-~~~l~~L~~l~~ 957 (984)
+++|++|+|+++ .++.++...+..+++|+.|+++++. ++.+|.. +..+++|+.++.
T Consensus 535 l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~L 591 (680)
T 1ziw_A 535 LSHLHILNLESN-GFDEIPVEVFKDLFELKIIDLGLNN-LNTLPASVFNNQVSLKSLNL 591 (680)
T ss_dssp CTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCCEEECCCC-CCCCCCHHHcccccCcceeECCCCC-CCcCCHhHhCCCCCCCEEEC
Confidence 556666666553 3555554334455555555555433 5555443 234444444443
No 18
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.91 E-value=1.2e-23 Score=250.63 Aligned_cols=411 Identities=17% Similarity=0.181 Sum_probs=262.3
Q ss_pred ccCeEeeeccCCCCCCC--CCCCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCCcc-hhcccccCeEec
Q 001999 498 KDTKKLSLFGFPSSTLP--DMPNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLPPS-ISRLINLNALFL 574 (984)
Q Consensus 498 ~~~r~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~-i~~l~~L~~L~L 574 (984)
+.+++|++++|.+..++ .+..+++|++|++++|.+..+++..|.++++|++|+|++|.++.+|.. ++.+++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 57899999999887753 468889999999999998888766688999999999999999988664 889999999999
Q ss_pred CCCcccc--cCchhhhccCCCcEEEecCcc-ccccc-hhhhccCCCCeeecccccccCccccCCCCCCcccchhhhhccc
Q 001999 575 RSCSLLF--QLPKEIRYLQKLEILDVRHTR-IQCLP-SEIGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSNIISKLC 650 (984)
Q Consensus 575 ~~c~~l~--~lp~~i~~L~~L~~L~l~~~~-l~~lp-~~~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~~L~ 650 (984)
++|. ++ ..|..++++++|++|++++|. +..+| ..++.+++|++|+++ ++.... .+| ..+++++
T Consensus 106 s~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~-----~n~l~~------~~~-~~l~~l~ 172 (549)
T 2z81_A 106 MGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIK-----ALSLRN------YQS-QSLKSIR 172 (549)
T ss_dssp TTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEE-----ETTCCE------ECT-TTTTTCS
T ss_pred CCCc-ccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeecc-----CCcccc------cCh-hhhhccc
Confidence 9875 44 356778899999999999987 66776 468899999999998 544332 234 3478888
Q ss_pred cccceeeeecCCchhHHhhhhhhhHH-HhhccCCCceEEEecCCcchhhhhhhcccccCCCCCCCCCCcceeEEEecccC
Q 001999 651 LLEELIIEVLDPSDRRWKQNVESIAG-EIAALEQLTTLHFYFPTIKCFKTFINRRKSVNGNKSRHGDNFKSFNIVVGYPQ 729 (984)
Q Consensus 651 ~L~~L~l~~~~~~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~ 729 (984)
+|++|++...... ..+. .+..+++|+.|+++.+.......... ... .....++...+.+..-
T Consensus 173 ~L~~L~l~~n~~~---------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~~------~~~~~L~~L~l~~n~l 235 (549)
T 2z81_A 173 DIHHLTLHLSESA---------FLLEIFADILSSVRYLELRDTNLARFQFSPL--PVD------EVSSPMKKLAFRGSVL 235 (549)
T ss_dssp EEEEEEEECSBST---------THHHHHHHSTTTBSEEEEESCBCTTCCCCCC--SSC------CCCCCCCEEEEESCEE
T ss_pred cCceEecccCccc---------ccchhhHhhcccccEEEccCCcccccccccc--chh------hhhhcccceecccccc
Confidence 9999988764322 1222 23568899999999776544310000 000 0011111111111100
Q ss_pred c-----------------cc-------------------------------eeccccccc-------------cccccce
Q 001999 730 S-----------------TS-------------------------------LLAGFDVSE-------------WSAEKHL 748 (984)
Q Consensus 730 ~-----------------~~-------------------------------~l~~~~~p~-------------~~~L~~L 748 (984)
. .. .+....+|. ...++.|
T Consensus 236 ~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L 315 (549)
T 2z81_A 236 TDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRI 315 (549)
T ss_dssp EHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEE
T ss_pred chhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEE
Confidence 0 00 000000000 1234555
Q ss_pred EEc-cCCCCchhHHHHHhhhccceeeccccccccccc--cccccccccCeeEEcccCCceEEecCCCCCcccCCCcceee
Q 001999 749 RFS-AGVEEIPGEFLTILKQAYSFELIGSQYAVNLSN--FGVDNLVRLQACVIEDCNEMTSIIDGNHRGVVPFQGLNNLH 825 (984)
Q Consensus 749 ~l~-~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~l~~--~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~L~~L~ 825 (984)
.+. +....++......+++|+.|++.++.....++. ..++.+++|+.|+++++ .++.++... .....+++|+.|+
T Consensus 316 ~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~-~~~~~l~~L~~L~ 393 (549)
T 2z81_A 316 TVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN-HLRSMQKTG-EILLTLKNLTSLD 393 (549)
T ss_dssp EEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTS-CCCCHHHHH-HHGGGCTTCCEEE
T ss_pred EeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCC-cccccccch-hhhhcCCCCCEEE
Confidence 555 233445554445666777777766654433221 12445677777777764 333332100 0122357777777
Q ss_pred cccccccccccccccccCcccccceeeecccccccccCcHHHHhhcccccEEeecccchhHHHhhcCcccccCCCCcccE
Q 001999 826 IKNLPKLMHIWVGPIASGSLNSLRTLRVKICHSIKTLFSKEMVAQLNELQDLQVEDCQMIEEIVEAGTVLAIGEFPKLKT 905 (984)
Q Consensus 826 l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~L~~ 905 (984)
++++ .++.+ +.....+++|+.|++++| .++.++. . ..++|++|++++|.. + + ....+++|++
T Consensus 394 Ls~N-~l~~l---p~~~~~~~~L~~L~Ls~N-~l~~l~~-~---~~~~L~~L~Ls~N~l-~-----~---~~~~l~~L~~ 455 (549)
T 2z81_A 394 ISRN-TFHPM---PDSCQWPEKMRFLNLSST-GIRVVKT-C---IPQTLEVLDVSNNNL-D-----S---FSLFLPRLQE 455 (549)
T ss_dssp CTTC-CCCCC---CSCCCCCTTCCEEECTTS-CCSCCCT-T---SCTTCSEEECCSSCC-S-----C---CCCCCTTCCE
T ss_pred CCCC-CCccC---ChhhcccccccEEECCCC-Ccccccc-h---hcCCceEEECCCCCh-h-----h---hcccCChhcE
Confidence 7776 34433 222345677777777777 5665521 1 135777888877753 1 1 2357899999
Q ss_pred eeccCCccccccCCCCccCCCCcceEeecccccccccCc-CCcCCcCcceeechHHhh
Q 001999 906 LELIDLPKLSTICNSLLLPWPSLETIKIKACNALKSFPS-TFKNTTMLKVIKGDQAWF 962 (984)
Q Consensus 906 L~L~~c~~L~~i~~~~~~~l~sL~~L~i~~C~~L~~lp~-~~~~l~~L~~l~~~~~~w 962 (984)
|+|+++ +++.++. ...+++|+.|++++|+ ++.+|. .+..+++|+.++...+-|
T Consensus 456 L~Ls~N-~l~~ip~--~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 456 LYISRN-KLKTLPD--ASLFPVLLVMKISRNQ-LKSVPDGIFDRLTSLQKIWLHTNPW 509 (549)
T ss_dssp EECCSS-CCSSCCC--GGGCTTCCEEECCSSC-CCCCCTTGGGGCTTCCEEECCSSCB
T ss_pred EECCCC-ccCcCCC--cccCccCCEEecCCCc-cCCcCHHHHhcCcccCEEEecCCCc
Confidence 999996 6888886 4678999999999986 777655 488899999999876644
No 19
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.90 E-value=8.6e-23 Score=243.35 Aligned_cols=411 Identities=16% Similarity=0.170 Sum_probs=229.2
Q ss_pred CeEeeeccCCCCCCCCCCCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccC-CcchhcccccCeEecCCCc
Q 001999 500 TKKLSLFGFPSSTLPDMPNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCL-PPSISRLINLNALFLRSCS 578 (984)
Q Consensus 500 ~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~c~ 578 (984)
.+.+.++++.+..+|... .++|+.|++++|.+..++...|.++++|++|+|++|.++.+ |..++.+++|++|+|++|.
T Consensus 33 ~~~l~ls~~~L~~ip~~~-~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 111 (562)
T 3a79_B 33 ESMVDYSNRNLTHVPKDL-PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR 111 (562)
T ss_dssp CCEEECTTSCCCSCCTTS-CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred CcEEEcCCCCCccCCCCC-CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCc
Confidence 367777777777766522 26777777777777777765577777788888877777766 5567777778888887754
Q ss_pred ccccCchhhhccCCCcEEEecCccccccc--hhhhccCCCCeeecccccccCccccCCCCCCcccchhhhhccccc--cc
Q 001999 579 LLFQLPKEIRYLQKLEILDVRHTRIQCLP--SEIGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSNIISKLCLL--EE 654 (984)
Q Consensus 579 ~l~~lp~~i~~L~~L~~L~l~~~~l~~lp--~~~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~~L~~L--~~ 654 (984)
++.+|.. .+++|++|++++|++..+| ..++++++|++|+++ ++.... ..+..+++| ++
T Consensus 112 -l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~-----~n~l~~----------~~~~~l~~L~L~~ 173 (562)
T 3a79_B 112 -LQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLS-----AAKFRQ----------LDLLPVAHLHLSC 173 (562)
T ss_dssp -CCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEE-----CSBCCT----------TTTGGGTTSCEEE
T ss_pred -CCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecC-----CCcccc----------CchhhhhhceeeE
Confidence 6667765 6777788888777777654 567777777777777 432211 113344444 66
Q ss_pred eeeeecCC--chhH---Hhh--------------hh-hhhHHHhhccCCCceEEEecCCc--chhhhhhhcccccCCCCC
Q 001999 655 LIIEVLDP--SDRR---WKQ--------------NV-ESIAGEIAALEQLTTLHFYFPTI--KCFKTFINRRKSVNGNKS 712 (984)
Q Consensus 655 L~l~~~~~--~~~~---~~~--------------~~-~~~~~~l~~l~~L~~L~l~~~~~--~~~~~~~~~~~~~~~~~~ 712 (984)
|++..... .... ... .. ......+..+++|+.|+++.+.. ..+..........
T Consensus 174 L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l----- 248 (562)
T 3a79_B 174 ILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRG----- 248 (562)
T ss_dssp EEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSC-----
T ss_pred EEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhcc-----
Confidence 66554322 1000 000 00 00000111233444455544321 1111100000000
Q ss_pred CCCCCcceeEEEecccC----ccceeccccccccccccceEEc-cCCC-CchhH--------------------------
Q 001999 713 RHGDNFKSFNIVVGYPQ----STSLLAGFDVSEWSAEKHLRFS-AGVE-EIPGE-------------------------- 760 (984)
Q Consensus 713 ~~~~~~l~~~~~~g~~~----~~~~l~~~~~p~~~~L~~L~l~-~~~~-~l~~~-------------------------- 760 (984)
..+....+.+..- ...+.+.. ....|+.|.+. +.+. .++..
T Consensus 249 ----~~L~~L~L~~~~l~~~~~~~~~~~~---~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~ 321 (562)
T 3a79_B 249 ----PTLLNVTLQHIETTWKCSVKLFQFF---WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSK 321 (562)
T ss_dssp ----SSCEEEEEEEEEECHHHHHHHHHHH---TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCH
T ss_pred ----CcceEEEecCCcCcHHHHHHHHHhh---hcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecCh
Confidence 0000000000000 00000000 00135555555 1111 12111
Q ss_pred --HHHHh--hhccceeecccccccccccccc-ccccccCeeEEcccCCceEEecCCCCCcccCCCcceeecccccccccc
Q 001999 761 --FLTIL--KQAYSFELIGSQYAVNLSNFGV-DNLVRLQACVIEDCNEMTSIIDGNHRGVVPFQGLNNLHIKNLPKLMHI 835 (984)
Q Consensus 761 --~~~~l--~~L~~L~l~~~~~~~~l~~~~~-~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~i 835 (984)
....+ .+++.|.+.++... ...+ ..+++|+.|+++++.-...++ .....+++|+.|+++++ .+..+
T Consensus 322 ~~~~~~~~~~~L~~L~l~~n~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~L~~N-~l~~~ 392 (562)
T 3a79_B 322 EALYSVFAEMNIKMLSISDTPFI----HMVCPPSPSSFTFLNFTQNVFTDSVF----QGCSTLKRLQTLILQRN-GLKNF 392 (562)
T ss_dssp HHHHHHHHTCCCSEEEEESSCCC----CCCCCSSCCCCCEEECCSSCCCTTTT----TTCCSCSSCCEEECCSS-CCCBT
T ss_pred hhhhhhhccCcceEEEccCCCcc----cccCccCCCCceEEECCCCccccchh----hhhcccCCCCEEECCCC-CcCCc
Confidence 11111 22444554444221 1111 457788888887754322122 12334678888888875 34443
Q ss_pred cccccccCcccccceeeecccccccccCcHHHHhhcccccEEeecccchhHHHhhcCcccccCCC-CcccEeeccCCccc
Q 001999 836 WVGPIASGSLNSLRTLRVKICHSIKTLFSKEMVAQLNELQDLQVEDCQMIEEIVEAGTVLAIGEF-PKLKTLELIDLPKL 914 (984)
Q Consensus 836 ~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~-~~L~~L~L~~c~~L 914 (984)
...+.....+++|+.|++++| .++...+...+..+++|++|++++|..... ....+ ++|++|+++++ .+
T Consensus 393 ~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--------~~~~l~~~L~~L~L~~N-~l 462 (562)
T 3a79_B 393 FKVALMTKNMSSLETLDVSLN-SLNSHAYDRTCAWAESILVLNLSSNMLTGS--------VFRCLPPKVKVLDLHNN-RI 462 (562)
T ss_dssp THHHHTTTTCTTCCEEECTTS-CCBSCCSSCCCCCCTTCCEEECCSSCCCGG--------GGSSCCTTCSEEECCSS-CC
T ss_pred ccchhhhcCCCCCCEEECCCC-cCCCccChhhhcCcccCCEEECCCCCCCcc--------hhhhhcCcCCEEECCCC-cC
Confidence 322333457888888888888 676622444567788888888888865221 12233 69999999996 68
Q ss_pred cccCCCCccCCCCcceEeecccccccccCcC-CcCCcCcceeechHHhh
Q 001999 915 STICNSLLLPWPSLETIKIKACNALKSFPST-FKNTTMLKVIKGDQAWF 962 (984)
Q Consensus 915 ~~i~~~~~~~l~sL~~L~i~~C~~L~~lp~~-~~~l~~L~~l~~~~~~w 962 (984)
+.++. ....+++|+.|++++|. ++.+|.. +..+++|+.++...+-|
T Consensus 463 ~~ip~-~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 463 MSIPK-DVTHLQALQELNVASNQ-LKSVPDGVFDRLTSLQYIWLHDNPW 509 (562)
T ss_dssp CCCCT-TTTSSCCCSEEECCSSC-CCCCCTTSTTTCTTCCCEECCSCCB
T ss_pred cccCh-hhcCCCCCCEEECCCCC-CCCCCHHHHhcCCCCCEEEecCCCc
Confidence 89988 56699999999999976 8899987 88899999998765544
No 20
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.90 E-value=2.2e-23 Score=259.97 Aligned_cols=178 Identities=21% Similarity=0.217 Sum_probs=132.8
Q ss_pred hhccCeEeeeccCCCCCCC--CCCCcCceeEEEecCc-ccCCCcchHhhcCCCccEEeccCCCCccC-CcchhcccccCe
Q 001999 496 EWKDTKKLSLFGFPSSTLP--DMPNCCEILTLIVEGR-RLEKLPMSFFEYMCHLQLLDLHDTSIRCL-PPSISRLINLNA 571 (984)
Q Consensus 496 ~~~~~r~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~-~l~~l~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~ 571 (984)
.++.+++|.+++|.+..++ .+..+++|++|++++| .+..+++..|.++++|++|+|++|.+..+ |..++++.+|++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence 4578999999999888753 4688999999999988 45566555689999999999999999876 788999999999
Q ss_pred EecCCCcccccCchh--hhccCCCcEEEecCccccccc--hhhhccCCCCeeecccccccCccccCCCCCCcccchhhhh
Q 001999 572 LFLRSCSLLFQLPKE--IRYLQKLEILDVRHTRIQCLP--SEIGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSNIIS 647 (984)
Q Consensus 572 L~L~~c~~l~~lp~~--i~~L~~L~~L~l~~~~l~~lp--~~~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~ 647 (984)
|+|++|......|.. ++++++|++|++++|.+..++ ..++++++|++|+++ ++.... ..+ ..+.
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls-----~N~i~~------~~~-~~l~ 169 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFS-----SNQIFL------VCE-HELE 169 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEE-----SSCCCC------CCS-GGGH
T ss_pred eeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECC-----CCcCCe------eCH-HHcc
Confidence 999997644446665 889999999999999888653 568999999999998 554332 223 3366
Q ss_pred cc--ccccceeeeecCCchhHHhhhhhhhHHHhhccC------CCceEEEecCC
Q 001999 648 KL--CLLEELIIEVLDPSDRRWKQNVESIAGEIAALE------QLTTLHFYFPT 693 (984)
Q Consensus 648 ~L--~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~------~L~~L~l~~~~ 693 (984)
.+ ++|+.|.+....... ..+..+..+. .|+.|+++.+.
T Consensus 170 ~l~~~~L~~L~L~~n~l~~--------~~~~~~~~~~~~~~~~~L~~L~Ls~n~ 215 (844)
T 3j0a_A 170 PLQGKTLSFFSLAANSLYS--------RVSVDWGKCMNPFRNMVLEILDVSGNG 215 (844)
T ss_dssp HHHHCSSCCCEECCSBSCC--------CCCCCCCSSSCTTTTCCBSEEBCSSCC
T ss_pred cccCCccceEECCCCcccc--------ccccchhhcCCccccCceeEEecCCCc
Confidence 66 789999888643321 1111222222 48888888664
No 21
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.90 E-value=1.8e-22 Score=225.16 Aligned_cols=306 Identities=20% Similarity=0.280 Sum_probs=187.8
Q ss_pred ChhhhccCeEeeeccCCCCCCCCCCCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCCcchhcccccCeE
Q 001999 493 SEEEWKDTKKLSLFGFPSSTLPDMPNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLPPSISRLINLNAL 572 (984)
Q Consensus 493 ~~~~~~~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L 572 (984)
....+++++++.+.++.+..++.+..+++|++|++++|.+..++. +.++++|++|++++|.++.+| .+..+++|++|
T Consensus 39 ~~~~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L 115 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTNLREL 115 (347)
T ss_dssp CHHHHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEE
T ss_pred cchhcccccEEEEeCCccccchhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCch-HHcCCCcCCEE
Confidence 344567788888888777777777777778888888777777765 677777888888877777764 47777778888
Q ss_pred ecCCCcccccCchhhhccCCCcEEEecCccccccchhhhccCCCCeeecccccccCccccCCCCCCcccchhhhhccccc
Q 001999 573 FLRSCSLLFQLPKEIRYLQKLEILDVRHTRIQCLPSEIGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSNIISKLCLL 652 (984)
Q Consensus 573 ~L~~c~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~~L~~L 652 (984)
++++|. +..+|. +.++++|++|++++|.....+..+..+++|++|+++ ++.... ++. +..+++|
T Consensus 116 ~l~~n~-i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~-----~~~~~~-------~~~--~~~l~~L 179 (347)
T 4fmz_A 116 YLNEDN-ISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVT-----ESKVKD-------VTP--IANLTDL 179 (347)
T ss_dssp ECTTSC-CCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECC-----SSCCCC-------CGG--GGGCTTC
T ss_pred ECcCCc-ccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEec-----CCCcCC-------chh--hccCCCC
Confidence 877754 566655 777777777777777444334447777777777777 443222 221 5666777
Q ss_pred cceeeeecCCchhHHhhhhhhhHHHhhccCCCceEEEecCCcchhhhhhhcccccCCCCCCCCCCcceeEEEecccCccc
Q 001999 653 EELIIEVLDPSDRRWKQNVESIAGEIAALEQLTTLHFYFPTIKCFKTFINRRKSVNGNKSRHGDNFKSFNIVVGYPQSTS 732 (984)
Q Consensus 653 ~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~ 732 (984)
++|++.++.... . ..+..+++|+.|+++.+.....
T Consensus 180 ~~L~l~~n~l~~---------~-~~~~~l~~L~~L~l~~n~l~~~----------------------------------- 214 (347)
T 4fmz_A 180 YSLSLNYNQIED---------I-SPLASLTSLHYFTAYVNQITDI----------------------------------- 214 (347)
T ss_dssp SEEECTTSCCCC---------C-GGGGGCTTCCEEECCSSCCCCC-----------------------------------
T ss_pred CEEEccCCcccc---------c-ccccCCCccceeecccCCCCCC-----------------------------------
Confidence 777666533221 0 1155566666666553321111
Q ss_pred eeccccccccccccceEEccCCCCchhHHHHHhhhccceeeccccccccccccccccccccCeeEEcccCCceEEecCCC
Q 001999 733 LLAGFDVSEWSAEKHLRFSAGVEEIPGEFLTILKQAYSFELIGSQYAVNLSNFGVDNLVRLQACVIEDCNEMTSIIDGNH 812 (984)
Q Consensus 733 ~l~~~~~p~~~~L~~L~l~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~ 812 (984)
+ .+..+++|+.|++++|. ++.++.
T Consensus 215 --------------------------------------------------~--~~~~~~~L~~L~l~~n~-l~~~~~--- 238 (347)
T 4fmz_A 215 --------------------------------------------------T--PVANMTRLNSLKIGNNK-ITDLSP--- 238 (347)
T ss_dssp --------------------------------------------------G--GGGGCTTCCEEECCSSC-CCCCGG---
T ss_pred --------------------------------------------------c--hhhcCCcCCEEEccCCc-cCCCcc---
Confidence 0 02235566666666543 222221
Q ss_pred CCcccCCCcceeecccccccccccccccccCcccccceeeecccccccccCcHHHHhhcccccEEeecccchhHHHhhcC
Q 001999 813 RGVVPFQGLNNLHIKNLPKLMHIWVGPIASGSLNSLRTLRVKICHSIKTLFSKEMVAQLNELQDLQVEDCQMIEEIVEAG 892 (984)
Q Consensus 813 ~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~ 892 (984)
...+++|+.|+++++ .+..+ .....+++|+.|++++| .++.+ +.+..+++|++|++++|.... .
T Consensus 239 --~~~l~~L~~L~l~~n-~l~~~----~~~~~l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~L~~n~l~~-----~ 302 (347)
T 4fmz_A 239 --LANLSQLTWLEIGTN-QISDI----NAVKDLTKLKMLNVGSN-QISDI---SVLNNLSQLNSLFLNNNQLGN-----E 302 (347)
T ss_dssp --GTTCTTCCEEECCSS-CCCCC----GGGTTCTTCCEEECCSS-CCCCC---GGGGGCTTCSEEECCSSCCCG-----G
T ss_pred --hhcCCCCCEEECCCC-ccCCC----hhHhcCCCcCEEEccCC-ccCCC---hhhcCCCCCCEEECcCCcCCC-----c
Confidence 223456666666654 23322 11245677777777777 66666 446677777777777775421 1
Q ss_pred cccccCCCCcccEeeccCCccccccCCCCccCCCCcceEeecccc
Q 001999 893 TVLAIGEFPKLKTLELIDLPKLSTICNSLLLPWPSLETIKIKACN 937 (984)
Q Consensus 893 ~~~~~~~~~~L~~L~L~~c~~L~~i~~~~~~~l~sL~~L~i~~C~ 937 (984)
.+..+..+++|++|++++|+ ++.++. ...+++|++|++++|+
T Consensus 303 ~~~~l~~l~~L~~L~L~~n~-l~~~~~--~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 303 DMEVIGGLTNLTTLFLSQNH-ITDIRP--LASLSKMDSADFANQV 344 (347)
T ss_dssp GHHHHHTCTTCSEEECCSSS-CCCCGG--GGGCTTCSEESSSCC-
T ss_pred ChhHhhccccCCEEEccCCc-cccccC--hhhhhccceeehhhhc
Confidence 22234567777777777765 555544 5667777777777776
No 22
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.90 E-value=6.4e-23 Score=232.74 Aligned_cols=305 Identities=13% Similarity=0.198 Sum_probs=207.3
Q ss_pred CCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCCc-chhcccccCeEecCCCcccccC-chhhhccCCCc
Q 001999 517 PNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLPP-SISRLINLNALFLRSCSLLFQL-PKEIRYLQKLE 594 (984)
Q Consensus 517 ~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~l-p~~i~~L~~L~ 594 (984)
..+++++.|+++++.+..+|..+|.++++|++|++++|.++.++. .++.+++|++|++++|. ++.+ |..++++++|+
T Consensus 42 ~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLT 120 (390)
T ss_dssp GGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCC
T ss_pred cccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCC-CCcCCHHHhcCCCCCC
Confidence 456899999999999999999989999999999999999998754 79999999999999976 5555 55689999999
Q ss_pred EEEecCccccccchh-hhccCCCCeeecccccccCccccCCCCCCcccchhhhhccccccceeeeecCCchhHHhhhhhh
Q 001999 595 ILDVRHTRIQCLPSE-IGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSNIISKLCLLEELIIEVLDPSDRRWKQNVES 673 (984)
Q Consensus 595 ~L~l~~~~l~~lp~~-~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~ 673 (984)
+|++++|.+..+|.. ++.+++|++|+++ ++... .++...++++++|++|++.+.....
T Consensus 121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~-----~n~l~-------~~~~~~~~~l~~L~~L~l~~n~l~~--------- 179 (390)
T 3o6n_A 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMS-----NNNLE-------RIEDDTFQATTSLQNLQLSSNRLTH--------- 179 (390)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECC-----SSCCC-------BCCTTTTSSCTTCCEEECCSSCCSB---------
T ss_pred EEECCCCccCcCCHHHhcCCCCCcEEECC-----CCccC-------ccChhhccCCCCCCEEECCCCcCCc---------
Confidence 999999999999987 4899999999998 55443 3554558888999999888643321
Q ss_pred hHHHhhccCCCceEEEecCCcchhhhhhhcccccCCCCCCCCCCcceeEEEecccCccceeccccccccccccceEEccC
Q 001999 674 IAGEIAALEQLTTLHFYFPTIKCFKTFINRRKSVNGNKSRHGDNFKSFNIVVGYPQSTSLLAGFDVSEWSAEKHLRFSAG 753 (984)
Q Consensus 674 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~l~~~~~p~~~~L~~L~l~~~ 753 (984)
. .+..+++|+.|+++.+....+
T Consensus 180 ~--~~~~l~~L~~L~l~~n~l~~~-------------------------------------------------------- 201 (390)
T 3o6n_A 180 V--DLSLIPSLFHANVSYNLLSTL-------------------------------------------------------- 201 (390)
T ss_dssp C--CGGGCTTCSEEECCSSCCSEE--------------------------------------------------------
T ss_pred c--ccccccccceeeccccccccc--------------------------------------------------------
Confidence 1 355667777777764321111
Q ss_pred CCCchhHHHHHhhhccceeeccccccccccccccccccccCeeEEcccCCceEEecCCCCCcccCCCcceeecccccccc
Q 001999 754 VEEIPGEFLTILKQAYSFELIGSQYAVNLSNFGVDNLVRLQACVIEDCNEMTSIIDGNHRGVVPFQGLNNLHIKNLPKLM 833 (984)
Q Consensus 754 ~~~l~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~L~~L~l~~~~~l~ 833 (984)
...++|+.|+++++ .+..++.. .+++|+.|+++++. +.
T Consensus 202 ----------------------------------~~~~~L~~L~l~~n-~l~~~~~~------~~~~L~~L~l~~n~-l~ 239 (390)
T 3o6n_A 202 ----------------------------------AIPIAVEELDASHN-SINVVRGP------VNVELTILKLQHNN-LT 239 (390)
T ss_dssp ----------------------------------ECCSSCSEEECCSS-CCCEEECC------CCSSCCEEECCSSC-CC
T ss_pred ----------------------------------CCCCcceEEECCCC-eeeecccc------ccccccEEECCCCC-Cc
Confidence 11234555555542 23333321 13566666666542 22
Q ss_pred cccccccccCcccccceeeecccccccccCcHHHHhhcccccEEeecccchhHHHhhcCcccccCCCCcccEeeccCCcc
Q 001999 834 HIWVGPIASGSLNSLRTLRVKICHSIKTLFSKEMVAQLNELQDLQVEDCQMIEEIVEAGTVLAIGEFPKLKTLELIDLPK 913 (984)
Q Consensus 834 ~i~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~L~~L~L~~c~~ 913 (984)
.. .....+++|+.|++++| .++.. ++..+..+++|++|++++|... +++.....+|+|++|+|+++ .
T Consensus 240 ~~----~~l~~l~~L~~L~Ls~n-~l~~~-~~~~~~~l~~L~~L~L~~n~l~------~~~~~~~~l~~L~~L~L~~n-~ 306 (390)
T 3o6n_A 240 DT----AWLLNYPGLVEVDLSYN-ELEKI-MYHPFVKMQRLERLYISNNRLV------ALNLYGQPIPTLKVLDLSHN-H 306 (390)
T ss_dssp CC----GGGGGCTTCSEEECCSS-CCCEE-ESGGGTTCSSCCEEECCSSCCC------EEECSSSCCTTCCEEECCSS-C
T ss_pred cc----HHHcCCCCccEEECCCC-cCCCc-ChhHccccccCCEEECCCCcCc------ccCcccCCCCCCCEEECCCC-c
Confidence 21 12245677777777777 56555 3355666777777777766531 23334456677777777775 4
Q ss_pred ccccCCCCccCCCCcceEeecccccccccCcCCcCCcCcceeechHH
Q 001999 914 LSTICNSLLLPWPSLETIKIKACNALKSFPSTFKNTTMLKVIKGDQA 960 (984)
Q Consensus 914 L~~i~~~~~~~l~sL~~L~i~~C~~L~~lp~~~~~l~~L~~l~~~~~ 960 (984)
++.++. ....+++|+.|++++|+ ++.+| +..+++|+.++...+
T Consensus 307 l~~~~~-~~~~l~~L~~L~L~~N~-i~~~~--~~~~~~L~~L~l~~N 349 (390)
T 3o6n_A 307 LLHVER-NQPQFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTLSHN 349 (390)
T ss_dssp CCCCGG-GHHHHTTCSEEECCSSC-CCCCC--CCTTCCCSEEECCSS
T ss_pred ceecCc-cccccCcCCEEECCCCc-cceeC--chhhccCCEEEcCCC
Confidence 666655 45566777777777765 56665 455666666666544
No 23
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.89 E-value=1.4e-23 Score=256.84 Aligned_cols=355 Identities=14% Similarity=0.136 Sum_probs=216.5
Q ss_pred CCC-CCCcCceeEEEecCcccCC------------------CcchH-hhcCCCccEEeccCCCCc-cCCcchhcccccCe
Q 001999 513 LPD-MPNCCEILTLIVEGRRLEK------------------LPMSF-FEYMCHLQLLDLHDTSIR-CLPPSISRLINLNA 571 (984)
Q Consensus 513 l~~-~~~~~~L~~L~l~~~~l~~------------------l~~~~-~~~l~~Lr~L~L~~~~i~-~lp~~i~~l~~L~~ 571 (984)
+|. +.++++|++|++++|.+.. +|..+ |.++++|++|+|++|.+. .+|..++++++|++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 443 5678889999999888887 78773 338999999999998755 67888999999999
Q ss_pred EecCCCcccc--cCchhhhccC-------CCcEEEecCccccccch--hhhccCCCCeeecccccccCccccCCCCCCcc
Q 001999 572 LFLRSCSLLF--QLPKEIRYLQ-------KLEILDVRHTRIQCLPS--EIGQLIKLKCLRVSWVENVGNHTHAGAWPGEM 640 (984)
Q Consensus 572 L~L~~c~~l~--~lp~~i~~L~-------~L~~L~l~~~~l~~lp~--~~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ 640 (984)
|+|++|..++ .+|..++++. +|++|++++|.+..+|. .++++++|++|+++ ++... .
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls-----~N~l~-------~ 587 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCV-----HNKVR-------H 587 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECT-----TSCCC-------B
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECC-----CCCcc-------c
Confidence 9999876355 4888887776 89999999998888888 88999999999998 54432 3
Q ss_pred cchhhhhccccccceeeeecCCchhHHhhhhhhhHHHhhccCC-CceEEEecCCcchhhhhhhcccccCCCCCCCCCCcc
Q 001999 641 ISSNIISKLCLLEELIIEVLDPSDRRWKQNVESIAGEIAALEQ-LTTLHFYFPTIKCFKTFINRRKSVNGNKSRHGDNFK 719 (984)
Q Consensus 641 ip~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 719 (984)
+| .++++++|+.|++.+.... .++..+..+++ |+.|+++.+....++......
T Consensus 588 lp--~~~~L~~L~~L~Ls~N~l~---------~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~--------------- 641 (876)
T 4ecn_A 588 LE--AFGTNVKLTDLKLDYNQIE---------EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAK--------------- 641 (876)
T ss_dssp CC--CCCTTSEESEEECCSSCCS---------CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTT---------------
T ss_pred ch--hhcCCCcceEEECcCCccc---------cchHHHhhccccCCEEECcCCCCCcCchhhhcc---------------
Confidence 66 4788889999988864332 34556778888 999999877655333211000
Q ss_pred eeEEEecccCccceeccccccccccccceEEc-cCCCCchh-H--HHH--Hhhhccceeecccccccccccccccccccc
Q 001999 720 SFNIVVGYPQSTSLLAGFDVSEWSAEKHLRFS-AGVEEIPG-E--FLT--ILKQAYSFELIGSQYAVNLSNFGVDNLVRL 793 (984)
Q Consensus 720 ~~~~~~g~~~~~~~l~~~~~p~~~~L~~L~l~-~~~~~l~~-~--~~~--~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L 793 (984)
....|+.|.++ +.+.+..+ . ... .+++|+.|.+.++.. ..++...+..+++|
T Consensus 642 ---------------------~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L-~~lp~~~~~~l~~L 699 (876)
T 4ecn_A 642 ---------------------SVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEI-QKFPTELFATGSPI 699 (876)
T ss_dssp ---------------------CSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCC-CSCCHHHHHTTCCC
T ss_pred ---------------------ccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcC-CccCHHHHccCCCC
Confidence 00013334443 11111000 0 000 012344444433322 23333223356777
Q ss_pred CeeEEcccCCceEEecCCCCCc----ccCCCcceeecccccccccccccccccCcccccceeeecccccccccCcHHHHh
Q 001999 794 QACVIEDCNEMTSIIDGNHRGV----VPFQGLNNLHIKNLPKLMHIWVGPIASGSLNSLRTLRVKICHSIKTLFSKEMVA 869 (984)
Q Consensus 794 ~~L~l~~~~~l~~i~~~~~~~~----~~~~~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~l~ 869 (984)
+.|+++++ .+..++....... ..+++|+.|+|++| ++..++... ....+++|+.|+|++| .++.+ | ..+.
T Consensus 700 ~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~~l-~~~~l~~L~~L~Ls~N-~L~~l-p-~~l~ 773 (876)
T 4ecn_A 700 STIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDF-RATTLPYLSNMDVSYN-CFSSF-P-TQPL 773 (876)
T ss_dssp SEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCCGGG-STTTCTTCCEEECCSS-CCSSC-C-CGGG
T ss_pred CEEECCCC-cCCccChHHhccccccccccCCccEEECCCC-CCccchHHh-hhccCCCcCEEEeCCC-CCCcc-c-hhhh
Confidence 77777764 4445554332211 11236777777765 344332111 0125677777777777 66665 2 3455
Q ss_pred hcccccEEeecccchhHH-HhhcCcccccCCCCcccEeeccCCccccccCCCCccCCCCcceEeecccc
Q 001999 870 QLNELQDLQVEDCQMIEE-IVEAGTVLAIGEFPKLKTLELIDLPKLSTICNSLLLPWPSLETIKIKACN 937 (984)
Q Consensus 870 ~l~~L~~L~l~~c~~l~~-i~~~~~~~~~~~~~~L~~L~L~~c~~L~~i~~~~~~~l~sL~~L~i~~C~ 937 (984)
.+++|+.|++++|..+.. -+...++..+..+++|+.|+|++|. ++.+|. .+ .++|+.|++++|+
T Consensus 774 ~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~-L~~Ip~-~l--~~~L~~LdLs~N~ 838 (876)
T 4ecn_A 774 NSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND-IRKVDE-KL--TPQLYILDIADNP 838 (876)
T ss_dssp GCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCS-CC--CSSSCEEECCSCT
T ss_pred cCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCC-CCccCH-hh--cCCCCEEECCCCC
Confidence 777777777766431100 0011344456667777777777754 466666 22 2577777777776
No 24
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.89 E-value=1.3e-22 Score=242.86 Aligned_cols=406 Identities=17% Similarity=0.152 Sum_probs=274.3
Q ss_pred hhhhccCeEeeeccCCCCCCCC--CCCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCCc-chhcccccC
Q 001999 494 EEEWKDTKKLSLFGFPSSTLPD--MPNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLPP-SISRLINLN 570 (984)
Q Consensus 494 ~~~~~~~r~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~L~ 570 (984)
....+++++|.+++|.+..++. +..+++|++|++++|.+..+++..|.++++|++|++++|.++.+|. .++++++|+
T Consensus 48 ~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~ 127 (570)
T 2z63_A 48 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127 (570)
T ss_dssp TTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCC
T ss_pred hhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCcccccccccc
Confidence 3456789999999998887653 6789999999999999998887779999999999999999998865 689999999
Q ss_pred eEecCCCcccc-cCchhhhccCCCcEEEecCccccccc-hhhhccCCC----CeeecccccccCc--cc-----cC----
Q 001999 571 ALFLRSCSLLF-QLPKEIRYLQKLEILDVRHTRIQCLP-SEIGQLIKL----KCLRVSWVENVGN--HT-----HA---- 633 (984)
Q Consensus 571 ~L~L~~c~~l~-~lp~~i~~L~~L~~L~l~~~~l~~lp-~~~~~L~~L----~~L~l~~~~~~~~--~~-----l~---- 633 (984)
+|++++|.... .+|..++++++|++|++++|.+..++ ..++.+++| ++|+++++.-.+. .. ++
T Consensus 128 ~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l 207 (570)
T 2z63_A 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTL 207 (570)
T ss_dssp EEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEE
T ss_pred EEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEec
Confidence 99999975333 47899999999999999999988664 457777777 6777663210000 00 00
Q ss_pred -CC----------------------------------------------------------CCCcccchhhhhccccccc
Q 001999 634 -GA----------------------------------------------------------WPGEMISSNIISKLCLLEE 654 (984)
Q Consensus 634 -~~----------------------------------------------------------~~~~~ip~~~l~~L~~L~~ 654 (984)
+. .....+| ..++.+++|++
T Consensus 208 ~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~-~~~~~l~~L~~ 286 (570)
T 2z63_A 208 RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDII-DLFNCLTNVSS 286 (570)
T ss_dssp ESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCST-TTTGGGTTCSE
T ss_pred ccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhch-hhhcCcCcccE
Confidence 00 0000011 22455667777
Q ss_pred eeeeecCCchhHHhhhhhhhHHHhhccCCCceEEEecCCcchhhhhhhcccccCCCCCCCCCCcceeEEEecccCcccee
Q 001999 655 LIIEVLDPSDRRWKQNVESIAGEIAALEQLTTLHFYFPTIKCFKTFINRRKSVNGNKSRHGDNFKSFNIVVGYPQSTSLL 734 (984)
Q Consensus 655 L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~l 734 (984)
|++.+... ..++..+..+ +|+.|+++.+....++. .....++...+.+...... .
T Consensus 287 L~l~~~~l---------~~l~~~~~~~-~L~~L~l~~n~~~~l~~--------------~~l~~L~~L~l~~n~~~~~-~ 341 (570)
T 2z63_A 287 FSLVSVTI---------ERVKDFSYNF-GWQHLELVNCKFGQFPT--------------LKLKSLKRLTFTSNKGGNA-F 341 (570)
T ss_dssp EEEESCEE---------CSCCBCCSCC-CCSEEEEESCBCSSCCB--------------CBCSSCCEEEEESCBSCCB-C
T ss_pred EEecCccc---------hhhhhhhccC-CccEEeeccCcccccCc--------------ccccccCEEeCcCCccccc-c
Confidence 77664322 1233345566 89999999776553322 1122233334444332211 1
Q ss_pred ccccccccccccceEEc-cCCCCch--hHHHHHhhhccceeeccccccccccccccccccccCeeEEcccCCceEEecCC
Q 001999 735 AGFDVSEWSAEKHLRFS-AGVEEIP--GEFLTILKQAYSFELIGSQYAVNLSNFGVDNLVRLQACVIEDCNEMTSIIDGN 811 (984)
Q Consensus 735 ~~~~~p~~~~L~~L~l~-~~~~~l~--~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~l~~i~~~~ 811 (984)
....++.|+.|.++ +...... +..+..+++|+.|.+.++... .++. .+.++++|+.|+++++. +..++..
T Consensus 342 ---~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~-~~~~l~~L~~L~l~~n~-l~~~~~~- 414 (570)
T 2z63_A 342 ---SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSS-NFLGLEQLEHLDFQHSN-LKQMSEF- 414 (570)
T ss_dssp ---CCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEE-EEEE-EEETCTTCCEEECTTSE-EESCTTS-
T ss_pred ---ccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccc-cccc-cccccCCCCEEEccCCc-cccccch-
Confidence 11334558899998 2233332 345677889999998777533 3333 26789999999999854 3222211
Q ss_pred CCCcccCCCcceeecccccccccccccccccCcccccceeeecccccccccCcHHHHhhcccccEEeecccchhHHHhhc
Q 001999 812 HRGVVPFQGLNNLHIKNLPKLMHIWVGPIASGSLNSLRTLRVKICHSIKTLFSKEMVAQLNELQDLQVEDCQMIEEIVEA 891 (984)
Q Consensus 812 ~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~ 891 (984)
.....+++|+.|++++|.-.... +.....+++|+.|++++| .+.+...+..+..+++|++|++++|... .
T Consensus 415 -~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~l~~n-~l~~~~~p~~~~~l~~L~~L~l~~n~l~-----~ 484 (570)
T 2z63_A 415 -SVFLSLRNLIYLDISHTHTRVAF---NGIFNGLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQCQLE-----Q 484 (570)
T ss_dssp -CTTTTCTTCCEEECTTSCCEECC---TTTTTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTSCCC-----E
T ss_pred -hhhhcCCCCCEEeCcCCcccccc---hhhhhcCCcCcEEECcCC-cCccccchhhhhcccCCCEEECCCCccc-----c
Confidence 12345699999999998533221 223357899999999999 5652111256789999999999999752 1
Q ss_pred CcccccCCCCcccEeeccCCccccccCCCCccCCCCcceEeecccccccccC
Q 001999 892 GTVLAIGEFPKLKTLELIDLPKLSTICNSLLLPWPSLETIKIKACNALKSFP 943 (984)
Q Consensus 892 ~~~~~~~~~~~L~~L~L~~c~~L~~i~~~~~~~l~sL~~L~i~~C~~L~~lp 943 (984)
..+..+..+++|++|+|++| +++.++...+..+++|+.|++++|+--...|
T Consensus 485 ~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 485 LSPTAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp ECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CChhhhhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence 23456778999999999996 5888776467889999999999988444444
No 25
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.89 E-value=1.1e-23 Score=254.05 Aligned_cols=353 Identities=12% Similarity=0.127 Sum_probs=250.6
Q ss_pred CCCcCceeEEEecCcccCC------------------CcchHhh--cCCCccEEeccCCCCc-cCCcchhcccccCeEec
Q 001999 516 MPNCCEILTLIVEGRRLEK------------------LPMSFFE--YMCHLQLLDLHDTSIR-CLPPSISRLINLNALFL 574 (984)
Q Consensus 516 ~~~~~~L~~L~l~~~~l~~------------------l~~~~~~--~l~~Lr~L~L~~~~i~-~lp~~i~~l~~L~~L~L 574 (984)
+.++++|++|++++|.+.. +|.. +. ++++|++|+|++|.+. .+|..++++++|++|++
T Consensus 202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~-l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 280 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTED-LKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINV 280 (636)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEEC
T ss_pred HhcccCCCEEECcCCccccccccccccccccchhcccCchh-hhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEEC
Confidence 4678999999999999988 8887 67 9999999999999866 67999999999999999
Q ss_pred CCCcccc--cCchhhhcc------CCCcEEEecCccccccch--hhhccCCCCeeecccccccCccccCCCCCCcccchh
Q 001999 575 RSCSLLF--QLPKEIRYL------QKLEILDVRHTRIQCLPS--EIGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSN 644 (984)
Q Consensus 575 ~~c~~l~--~lp~~i~~L------~~L~~L~l~~~~l~~lp~--~~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~ 644 (984)
++|..++ .+|..++++ ++|++|++++|++..+|. .++++++|++|+++ ++.... .+|
T Consensus 281 s~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~-----~N~l~g------~ip-- 347 (636)
T 4eco_A 281 ACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECL-----YNQLEG------KLP-- 347 (636)
T ss_dssp TTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECC-----SCCCEE------ECC--
T ss_pred cCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCc-----CCcCcc------chh--
Confidence 9986355 589999887 999999999999999999 89999999999999 665542 467
Q ss_pred hhhccccccceeeeecCCchhHHhhhhhhhHHHhhccCC-CceEEEecCCcchhhhhhhcccccCCCCCCCCCCcceeEE
Q 001999 645 IISKLCLLEELIIEVLDPSDRRWKQNVESIAGEIAALEQ-LTTLHFYFPTIKCFKTFINRRKSVNGNKSRHGDNFKSFNI 723 (984)
Q Consensus 645 ~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 723 (984)
.++.+++|+.|++.+... ..++..+..+++ |+.|+++.+....++.....
T Consensus 348 ~~~~l~~L~~L~L~~N~l---------~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~-------------------- 398 (636)
T 4eco_A 348 AFGSEIKLASLNLAYNQI---------TEIPANFCGFTEQVENLSFAHNKLKYIPNIFDA-------------------- 398 (636)
T ss_dssp CCEEEEEESEEECCSSEE---------EECCTTSEEECTTCCEEECCSSCCSSCCSCCCT--------------------
T ss_pred hhCCCCCCCEEECCCCcc---------ccccHhhhhhcccCcEEEccCCcCcccchhhhh--------------------
Confidence 489999999999986322 245566888999 99999998765543321110
Q ss_pred EecccCccceeccccccccccccceEEc-cCCCCchhHHHH-------HhhhccceeeccccccccccccccccccccCe
Q 001999 724 VVGYPQSTSLLAGFDVSEWSAEKHLRFS-AGVEEIPGEFLT-------ILKQAYSFELIGSQYAVNLSNFGVDNLVRLQA 795 (984)
Q Consensus 724 ~~g~~~~~~~l~~~~~p~~~~L~~L~l~-~~~~~l~~~~~~-------~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~ 795 (984)
..+..|+.|.++ +.+.+..+..+. .+++|+.|.+.++.. ..++...+..+++|+.
T Consensus 399 ----------------~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l-~~lp~~~~~~l~~L~~ 461 (636)
T 4eco_A 399 ----------------KSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQI-SKFPKELFSTGSPLSS 461 (636)
T ss_dssp ----------------TCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCC-CSCCTHHHHTTCCCSE
T ss_pred ----------------cccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCcc-CcCCHHHHccCCCCCE
Confidence 001124444444 111111111011 233556666655433 2454433445889999
Q ss_pred eEEcccCCceEEecCCCCCc----ccCCCcceeecccccccccccccccccC--cccccceeeecccccccccCcHHHHh
Q 001999 796 CVIEDCNEMTSIIDGNHRGV----VPFQGLNNLHIKNLPKLMHIWVGPIASG--SLNSLRTLRVKICHSIKTLFSKEMVA 869 (984)
Q Consensus 796 L~l~~~~~l~~i~~~~~~~~----~~~~~L~~L~l~~~~~l~~i~~~~~~~~--~l~~L~~L~l~~c~~L~~l~~~~~l~ 869 (984)
|+++++ .+..++....... ..+++|+.|+++++. +..++ .... .+++|+.|++++| .++.+ | ..+.
T Consensus 462 L~Ls~N-~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp---~~~~~~~l~~L~~L~Ls~N-~l~~i-p-~~~~ 533 (636)
T 4eco_A 462 INLMGN-MLTEIPKNSLKDENENFKNTYLLTSIDLRFNK-LTKLS---DDFRATTLPYLVGIDLSYN-SFSKF-P-TQPL 533 (636)
T ss_dssp EECCSS-CCSBCCSSSSEETTEECTTGGGCCEEECCSSC-CCBCC---GGGSTTTCTTCCEEECCSS-CCSSC-C-CGGG
T ss_pred EECCCC-CCCCcCHHHhccccccccccCCccEEECcCCc-CCccC---hhhhhccCCCcCEEECCCC-CCCCc-C-hhhh
Confidence 999885 4556654432211 012389999998864 44442 2223 7899999999999 78876 3 4577
Q ss_pred hcccccEEeecccchhH--HHhhcCcccccCCCCcccEeeccCCccccccCCCCccCCCCcceEeeccccccccc
Q 001999 870 QLNELQDLQVEDCQMIE--EIVEAGTVLAIGEFPKLKTLELIDLPKLSTICNSLLLPWPSLETIKIKACNALKSF 942 (984)
Q Consensus 870 ~l~~L~~L~l~~c~~l~--~i~~~~~~~~~~~~~~L~~L~L~~c~~L~~i~~~~~~~l~sL~~L~i~~C~~L~~l 942 (984)
.+++|++|++++|..+. .+ ...++..+..+++|++|+|++|. ++.+|. .+. ++|+.|++++|+ +..+
T Consensus 534 ~l~~L~~L~Ls~N~~ls~N~l-~~~~p~~l~~l~~L~~L~Ls~N~-l~~ip~-~~~--~~L~~L~Ls~N~-l~~~ 602 (636)
T 4eco_A 534 NSSTLKGFGIRNQRDAQGNRT-LREWPEGITLCPSLTQLQIGSND-IRKVNE-KIT--PNISVLDIKDNP-NISI 602 (636)
T ss_dssp GCSSCCEEECCSCBCTTCCBC-CCCCCTTGGGCSSCCEEECCSSC-CCBCCS-CCC--TTCCEEECCSCT-TCEE
T ss_pred cCCCCCEEECCCCcccccCcc-cccChHHHhcCCCCCEEECCCCc-CCccCH-hHh--CcCCEEECcCCC-Cccc
Confidence 89999999997654210 00 12455677889999999999965 688887 333 899999999997 4444
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.89 E-value=1.8e-22 Score=234.29 Aligned_cols=369 Identities=15% Similarity=0.150 Sum_probs=178.5
Q ss_pred eeeccCCCCCCCCCCCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCc-cC-CcchhcccccCeEecCCCccc
Q 001999 503 LSLFGFPSSTLPDMPNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIR-CL-PPSISRLINLNALFLRSCSLL 580 (984)
Q Consensus 503 l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~-~l-p~~i~~l~~L~~L~L~~c~~l 580 (984)
+...++.+..+|.. .++|++|++++|.+..+++..|.++++|++|++++|.+. .+ |..++.+++|++|+|++|...
T Consensus 15 ~~c~~~~l~~lp~l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~ 92 (455)
T 3v47_A 15 AICINRGLHQVPEL--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL 92 (455)
T ss_dssp EECCSSCCSSCCCC--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTC
T ss_pred cCcCCCCcccCCCC--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccC
Confidence 34444455555542 256666666666666654444666666666666666654 33 345666666666666665433
Q ss_pred ccCchhhhccCCCcEEEecCccccc-cchh--hhccCCCCeeecccccccCccccCCCCCCcccchhhhhccccccceee
Q 001999 581 FQLPKEIRYLQKLEILDVRHTRIQC-LPSE--IGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSNIISKLCLLEELII 657 (984)
Q Consensus 581 ~~lp~~i~~L~~L~~L~l~~~~l~~-lp~~--~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~~L~~L~~L~l 657 (984)
...|..++++++|++|++++|.+.. .|.. ++.+++|++|+++ ++.... ..|...++++++|++|++
T Consensus 93 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~-----~n~l~~------~~~~~~~~~l~~L~~L~L 161 (455)
T 3v47_A 93 QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLR-----DNNIKK------IQPASFFLNMRRFHVLDL 161 (455)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECC-----SSBCCS------CCCCGGGGGCTTCCEEEC
T ss_pred ccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECC-----CCccCc------cCcccccCCCCcccEEeC
Confidence 3345566666666666666666653 3333 6666666666666 443322 223333566666666666
Q ss_pred eecCCchhHHhhhhhhhHHHhhcc--CCCceEEEecCCcchhhhhhhcccccCCCCCCCCCCcceeEEEecccCccceec
Q 001999 658 EVLDPSDRRWKQNVESIAGEIAAL--EQLTTLHFYFPTIKCFKTFINRRKSVNGNKSRHGDNFKSFNIVVGYPQSTSLLA 735 (984)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~l~ 735 (984)
.+..... .....+..+ .+|+.|+++.+....++.........
T Consensus 162 ~~n~l~~--------~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~---------------------------- 205 (455)
T 3v47_A 162 TFNKVKS--------ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKC---------------------------- 205 (455)
T ss_dssp TTCCBSC--------CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHH----------------------------
T ss_pred CCCcccc--------cChhhhhccccccccccccccCcccccchhhcccccc----------------------------
Confidence 5432221 111222222 34555555544332221100000000
Q ss_pred cccccccccccceEEccCCC--CchhHHHHHh---hhccceeeccccccc---------cccccccc--cccccCeeEEc
Q 001999 736 GFDVSEWSAEKHLRFSAGVE--EIPGEFLTIL---KQAYSFELIGSQYAV---------NLSNFGVD--NLVRLQACVIE 799 (984)
Q Consensus 736 ~~~~p~~~~L~~L~l~~~~~--~l~~~~~~~l---~~L~~L~l~~~~~~~---------~l~~~~~~--~l~~L~~L~l~ 799 (984)
......+.|+.|.++ ++. +..+..+... .+++.|.+.++.... ......+. ..++|+.|+++
T Consensus 206 -~~~~~~~~L~~L~Ls-~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 283 (455)
T 3v47_A 206 -GNPFKNTSITTLDLS-GNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLS 283 (455)
T ss_dssp -CCTTTTCEEEEEECT-TSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECC
T ss_pred -ccccccceeeeEecC-CCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEec
Confidence 000011124455555 221 1111111111 333334333321111 11111111 12566777776
Q ss_pred ccCCceEEecCCCCCcccCCCcceeecccccccccccccccccCcccccceeeecccccccccCcHHHHhhcccccEEee
Q 001999 800 DCNEMTSIIDGNHRGVVPFQGLNNLHIKNLPKLMHIWVGPIASGSLNSLRTLRVKICHSIKTLFSKEMVAQLNELQDLQV 879 (984)
Q Consensus 800 ~~~~l~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~l~~l~~L~~L~l 879 (984)
++. +..+... ....+++|+.|+++++. +..+. +.....+++|+.|++++| .++.+ ++..+..+++|++|++
T Consensus 284 ~n~-l~~~~~~---~~~~l~~L~~L~Ls~n~-l~~~~--~~~~~~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~~L~~L~L 354 (455)
T 3v47_A 284 KSK-IFALLKS---VFSHFTDLEQLTLAQNE-INKID--DNAFWGLTHLLKLNLSQN-FLGSI-DSRMFENLDKLEVLDL 354 (455)
T ss_dssp SSC-CCEECTT---TTTTCTTCCEEECTTSC-CCEEC--TTTTTTCTTCCEEECCSS-CCCEE-CGGGGTTCTTCCEEEC
T ss_pred Ccc-ccccchh---hcccCCCCCEEECCCCc-ccccC--hhHhcCcccCCEEECCCC-ccCCc-ChhHhcCcccCCEEEC
Confidence 643 2333221 12234666666666653 22221 112245666777777666 56555 3345566667777777
Q ss_pred cccchhHHHhhcCcccccCCCCcccEeeccCCccccccCCCCccCCCCcceEeecccc
Q 001999 880 EDCQMIEEIVEAGTVLAIGEFPKLKTLELIDLPKLSTICNSLLLPWPSLETIKIKACN 937 (984)
Q Consensus 880 ~~c~~l~~i~~~~~~~~~~~~~~L~~L~L~~c~~L~~i~~~~~~~l~sL~~L~i~~C~ 937 (984)
++|... ...+..+..+++|++|+|+++ .++.++...+..+++|+.|++++|+
T Consensus 355 s~N~l~-----~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 355 SYNHIR-----ALGDQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp CSSCCC-----EECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCccc-----ccChhhccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCC
Confidence 666531 112334556666777777663 4666555344566667777776655
No 27
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.89 E-value=2.9e-22 Score=223.59 Aligned_cols=308 Identities=20% Similarity=0.292 Sum_probs=235.5
Q ss_pred CCCCCCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCCcchhcccccCeEecCCCcccccCchhhhccCC
Q 001999 513 LPDMPNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLPPSISRLINLNALFLRSCSLLFQLPKEIRYLQK 592 (984)
Q Consensus 513 l~~~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~~ 592 (984)
......+++|++|+++++.+..++. +..+++|++|++++|.++.+|. +..+++|++|++++| .++.+| .++++++
T Consensus 37 ~~~~~~l~~L~~L~l~~~~i~~~~~--~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n-~i~~~~-~~~~l~~ 111 (347)
T 4fmz_A 37 VVTQEELESITKLVVAGEKVASIQG--IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTN-KITDIS-ALQNLTN 111 (347)
T ss_dssp EECHHHHTTCSEEECCSSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCG-GGTTCTT
T ss_pred cccchhcccccEEEEeCCccccchh--hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCC-cccCch-HHcCCCc
Confidence 3444678899999999999998875 7889999999999999999877 999999999999997 477775 5999999
Q ss_pred CcEEEecCccccccchhhhccCCCCeeecccccccCccccCCCCCCcccchhhhhccccccceeeeecCCchhHHhhhhh
Q 001999 593 LEILDVRHTRIQCLPSEIGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSNIISKLCLLEELIIEVLDPSDRRWKQNVE 672 (984)
Q Consensus 593 L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~ 672 (984)
|++|++++|.+..+|. +..+++|++|+++ ++.... .++ . +..+++|+.|++.++.....
T Consensus 112 L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~-----~n~~~~------~~~-~-~~~l~~L~~L~l~~~~~~~~------- 170 (347)
T 4fmz_A 112 LRELYLNEDNISDISP-LANLTKMYSLNLG-----ANHNLS------DLS-P-LSNMTGLNYLTVTESKVKDV------- 170 (347)
T ss_dssp CSEEECTTSCCCCCGG-GTTCTTCCEEECT-----TCTTCC------CCG-G-GTTCTTCCEEECCSSCCCCC-------
T ss_pred CCEEECcCCcccCchh-hccCCceeEEECC-----CCCCcc------ccc-c-hhhCCCCcEEEecCCCcCCc-------
Confidence 9999999999998877 8899999999999 554443 233 2 78888999998886543321
Q ss_pred hhHHHhhccCCCceEEEecCCcchhhhhhhcccccCCCCCCCCCCcceeEEEecccCccceeccccccccccccceEEcc
Q 001999 673 SIAGEIAALEQLTTLHFYFPTIKCFKTFINRRKSVNGNKSRHGDNFKSFNIVVGYPQSTSLLAGFDVSEWSAEKHLRFSA 752 (984)
Q Consensus 673 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~l~~~~~p~~~~L~~L~l~~ 752 (984)
..+..+++|+.|+++.+....
T Consensus 171 ---~~~~~l~~L~~L~l~~n~l~~-------------------------------------------------------- 191 (347)
T 4fmz_A 171 ---TPIANLTDLYSLSLNYNQIED-------------------------------------------------------- 191 (347)
T ss_dssp ---GGGGGCTTCSEEECTTSCCCC--------------------------------------------------------
T ss_pred ---hhhccCCCCCEEEccCCcccc--------------------------------------------------------
Confidence 126677888888776332111
Q ss_pred CCCCchhHHHHHhhhccceeeccccccccccccccccccccCeeEEcccCCceEEecCCCCCcccCCCcceeeccccccc
Q 001999 753 GVEEIPGEFLTILKQAYSFELIGSQYAVNLSNFGVDNLVRLQACVIEDCNEMTSIIDGNHRGVVPFQGLNNLHIKNLPKL 832 (984)
Q Consensus 753 ~~~~l~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~L~~L~l~~~~~l 832 (984)
+ + .+..+++|+.|+++++. +..++. ...+++|++|++++|. +
T Consensus 192 ----~-------------------------~--~~~~l~~L~~L~l~~n~-l~~~~~-----~~~~~~L~~L~l~~n~-l 233 (347)
T 4fmz_A 192 ----I-------------------------S--PLASLTSLHYFTAYVNQ-ITDITP-----VANMTRLNSLKIGNNK-I 233 (347)
T ss_dssp ----C-------------------------G--GGGGCTTCCEEECCSSC-CCCCGG-----GGGCTTCCEEECCSSC-C
T ss_pred ----c-------------------------c--cccCCCccceeecccCC-CCCCch-----hhcCCcCCEEEccCCc-c
Confidence 0 0 12347788888888753 333321 3356999999999974 3
Q ss_pred ccccccccccCcccccceeeecccccccccCcHHHHhhcccccEEeecccchhHHHhhcCcccccCCCCcccEeeccCCc
Q 001999 833 MHIWVGPIASGSLNSLRTLRVKICHSIKTLFSKEMVAQLNELQDLQVEDCQMIEEIVEAGTVLAIGEFPKLKTLELIDLP 912 (984)
Q Consensus 833 ~~i~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~L~~L~L~~c~ 912 (984)
..+. +...+++|+.|++++| .++.+ ..+..+++|++|++++|.. +. . ..+..+++|++|++++|+
T Consensus 234 ~~~~----~~~~l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~l~~n~l-~~-----~-~~~~~l~~L~~L~L~~n~ 298 (347)
T 4fmz_A 234 TDLS----PLANLSQLTWLEIGTN-QISDI---NAVKDLTKLKMLNVGSNQI-SD-----I-SVLNNLSQLNSLFLNNNQ 298 (347)
T ss_dssp CCCG----GGTTCTTCCEEECCSS-CCCCC---GGGTTCTTCCEEECCSSCC-CC-----C-GGGGGCTTCSEEECCSSC
T ss_pred CCCc----chhcCCCCCEEECCCC-ccCCC---hhHhcCCCcCEEEccCCcc-CC-----C-hhhcCCCCCCEEECcCCc
Confidence 3332 1468999999999999 78877 5688999999999999864 21 2 346789999999999975
Q ss_pred cccccCCCCccCCCCcceEeecccccccccCcCCcCCcCcceeechHHh
Q 001999 913 KLSTICNSLLLPWPSLETIKIKACNALKSFPSTFKNTTMLKVIKGDQAW 961 (984)
Q Consensus 913 ~L~~i~~~~~~~l~sL~~L~i~~C~~L~~lp~~~~~l~~L~~l~~~~~~ 961 (984)
++......+..+++|+.|++++|+ ++.+|. +..+++|+.++...+.
T Consensus 299 -l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 299 -LGNEDMEVIGGLTNLTTLFLSQNH-ITDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp -CCGGGHHHHHTCTTCSEEECCSSS-CCCCGG-GGGCTTCSEESSSCC-
T ss_pred -CCCcChhHhhccccCCEEEccCCc-cccccC-hhhhhccceeehhhhc
Confidence 555444356789999999999998 777765 7888999998876543
No 28
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=2.9e-22 Score=240.08 Aligned_cols=152 Identities=16% Similarity=0.268 Sum_probs=124.3
Q ss_pred CCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCC-cchhcccccCeEecCCCcccccCc-hhhhccCCCc
Q 001999 517 PNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLP-PSISRLINLNALFLRSCSLLFQLP-KEIRYLQKLE 594 (984)
Q Consensus 517 ~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~c~~l~~lp-~~i~~L~~L~ 594 (984)
..+.+++.|+++++.+..+|..+|.++++|++|+|++|.++.+| ..++.+++|++|+|++|. ++.+| ..++++++|+
T Consensus 48 l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~ 126 (597)
T 3oja_B 48 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLT 126 (597)
T ss_dssp GGGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCC
T ss_pred ccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCc-CCCCCHHHHcCCCCCC
Confidence 45688999999999999999998999999999999999999875 489999999999999976 55555 4579999999
Q ss_pred EEEecCccccccchh-hhccCCCCeeecccccccCccccCCCCCCcccchhhhhccccccceeeeecCCchhHHhhhhhh
Q 001999 595 ILDVRHTRIQCLPSE-IGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSNIISKLCLLEELIIEVLDPSDRRWKQNVES 673 (984)
Q Consensus 595 ~L~l~~~~l~~lp~~-~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~ 673 (984)
+|++++|.+..+|.. ++.+++|++|+++ ++... .++...++++++|+.|++.+.....
T Consensus 127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls-----~N~l~-------~~~~~~~~~l~~L~~L~L~~N~l~~--------- 185 (597)
T 3oja_B 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMS-----NNNLE-------RIEDDTFQATTSLQNLQLSSNRLTH--------- 185 (597)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECC-----SSCCC-------BCCTTTTTTCTTCCEEECTTSCCSB---------
T ss_pred EEEeeCCCCCCCCHHHhccCCCCCEEEee-----CCcCC-------CCChhhhhcCCcCcEEECcCCCCCC---------
Confidence 999999999999987 5899999999998 55443 3555568889999999988644331
Q ss_pred hHHHhhccCCCceEEEecC
Q 001999 674 IAGEIAALEQLTTLHFYFP 692 (984)
Q Consensus 674 ~~~~l~~l~~L~~L~l~~~ 692 (984)
. .+..+++|+.|+++.+
T Consensus 186 ~--~~~~l~~L~~L~l~~n 202 (597)
T 3oja_B 186 V--DLSLIPSLFHANVSYN 202 (597)
T ss_dssp C--CGGGCTTCSEEECCSS
T ss_pred c--ChhhhhhhhhhhcccC
Confidence 1 3556777887777644
No 29
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.88 E-value=6.7e-22 Score=230.83 Aligned_cols=315 Identities=23% Similarity=0.264 Sum_probs=203.4
Q ss_pred eEeeeccCCCCCCCCCCCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccC-CcchhcccccCeEecCCCcc
Q 001999 501 KKLSLFGFPSSTLPDMPNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCL-PPSISRLINLNALFLRSCSL 579 (984)
Q Consensus 501 r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~c~~ 579 (984)
+.+...++.+..+|.. -.++++.|++++|.+..++...|.++++|++|+|++|.++.+ |..++++++|++|+|++|.
T Consensus 14 ~~v~c~~~~l~~ip~~-~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~- 91 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEG-IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR- 91 (477)
T ss_dssp TEEECCSCCCSSCCSC-CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-
T ss_pred CEEEeCCCCcCcCCCC-CCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc-
Confidence 3455566666666642 236889999999999988776689999999999999999876 7789999999999999864
Q ss_pred cccCchh-hhccCCCcEEEecCcccccc-chhhhccCCCCeeecccccccCccccCCCCCCcccchhhhhccccccceee
Q 001999 580 LFQLPKE-IRYLQKLEILDVRHTRIQCL-PSEIGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSNIISKLCLLEELII 657 (984)
Q Consensus 580 l~~lp~~-i~~L~~L~~L~l~~~~l~~l-p~~~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~~L~~L~~L~l 657 (984)
++.+|.. ++++++|++|++++|.+..+ |..+..+++|++|+++ ++... .++...++++++|++|++
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~-----~n~l~-------~~~~~~~~~l~~L~~L~l 159 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVG-----DNDLV-------YISHRAFSGLNSLEQLTL 159 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEEC-----CTTCC-------EECTTSSTTCTTCCEEEE
T ss_pred CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECC-----CCccc-------eeChhhccCCCCCCEEEC
Confidence 7777764 68899999999999988865 4568899999999998 54432 244455788889999988
Q ss_pred eecCCchhHHhhhhhhhHHHhhccCCCceEEEecCCcchhhhhhhcccccCCCCCCCCCCcceeEEEecccCccceeccc
Q 001999 658 EVLDPSDRRWKQNVESIAGEIAALEQLTTLHFYFPTIKCFKTFINRRKSVNGNKSRHGDNFKSFNIVVGYPQSTSLLAGF 737 (984)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~l~~~ 737 (984)
.+.... ......+..+++|+.|+++.+......
T Consensus 160 ~~n~l~--------~~~~~~l~~l~~L~~L~l~~n~i~~~~--------------------------------------- 192 (477)
T 2id5_A 160 EKCNLT--------SIPTEALSHLHGLIVLRLRHLNINAIR--------------------------------------- 192 (477)
T ss_dssp ESCCCS--------SCCHHHHTTCTTCCEEEEESCCCCEEC---------------------------------------
T ss_pred CCCcCc--------ccChhHhcccCCCcEEeCCCCcCcEeC---------------------------------------
Confidence 864432 223345777888888888754322110
Q ss_pred cccccccccceEEccCCCCchhHHHHHhhhccceeeccccccccccccccccccccCeeEEcccCCceEEecCCCCCccc
Q 001999 738 DVSEWSAEKHLRFSAGVEEIPGEFLTILKQAYSFELIGSQYAVNLSNFGVDNLVRLQACVIEDCNEMTSIIDGNHRGVVP 817 (984)
Q Consensus 738 ~~p~~~~L~~L~l~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~ 817 (984)
...+..+++|+.|+++++..+..++.....
T Consensus 193 ----------------------------------------------~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~---- 222 (477)
T 2id5_A 193 ----------------------------------------------DYSFKRLYRLKVLEISHWPYLDTMTPNCLY---- 222 (477)
T ss_dssp ----------------------------------------------TTCSCSCTTCCEEEEECCTTCCEECTTTTT----
T ss_pred ----------------------------------------------hhhcccCcccceeeCCCCccccccCccccc----
Confidence 002334556666666666655555433221
Q ss_pred CCCcceeecccccccccccccccccCcccccceeeecccccccccCcHHHHhhcccccEEeecccchhHHHhhcCccccc
Q 001999 818 FQGLNNLHIKNLPKLMHIWVGPIASGSLNSLRTLRVKICHSIKTLFSKEMVAQLNELQDLQVEDCQMIEEIVEAGTVLAI 897 (984)
Q Consensus 818 ~~~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~ 897 (984)
..+|++|+++++ .+..+... ....+++|+.|++++| .++.+ +...+..+++|++|++++|... .-.+..+
T Consensus 223 ~~~L~~L~l~~n-~l~~~~~~--~~~~l~~L~~L~Ls~n-~l~~~-~~~~~~~l~~L~~L~L~~n~l~-----~~~~~~~ 292 (477)
T 2id5_A 223 GLNLTSLSITHC-NLTAVPYL--AVRHLVYLRFLNLSYN-PISTI-EGSMLHELLRLQEIQLVGGQLA-----VVEPYAF 292 (477)
T ss_dssp TCCCSEEEEESS-CCCSCCHH--HHTTCTTCCEEECCSS-CCCEE-CTTSCTTCTTCCEEECCSSCCS-----EECTTTB
T ss_pred CccccEEECcCC-cccccCHH--HhcCccccCeeECCCC-cCCcc-ChhhccccccCCEEECCCCccc-----eECHHHh
Confidence 235666666554 23322111 1235566666666666 45555 3344556666666666665431 1122344
Q ss_pred CCCCcccEeeccCCccccccCCCCccCCCCcceEeecccc
Q 001999 898 GEFPKLKTLELIDLPKLSTICNSLLLPWPSLETIKIKACN 937 (984)
Q Consensus 898 ~~~~~L~~L~L~~c~~L~~i~~~~~~~l~sL~~L~i~~C~ 937 (984)
..+++|+.|+|+++ .++.++...+..+++|+.|++++++
T Consensus 293 ~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 293 RGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp TTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred cCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCCC
Confidence 55666666666664 4555554334556666666666554
No 30
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.88 E-value=9.6e-22 Score=228.46 Aligned_cols=347 Identities=16% Similarity=0.238 Sum_probs=267.2
Q ss_pred CCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCCcchhcccccCeEecCCCcccccCchhhhccCCCcEE
Q 001999 517 PNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLPPSISRLINLNALFLRSCSLLFQLPKEIRYLQKLEIL 596 (984)
Q Consensus 517 ~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L 596 (984)
..+++|++|.+.++.+..+|. +..+++|++|+|++|.++.+|. ++.+++|++|++++|. +..+|. ++++++|++|
T Consensus 43 ~~l~~l~~L~l~~~~i~~l~~--~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L 117 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQ-IADITP-LANLTNLTGL 117 (466)
T ss_dssp HHHHTCCEEECCSSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GTTCTTCCEE
T ss_pred hHhccccEEecCCCCCccCcc--hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCc-cccChh-hcCCCCCCEE
Confidence 346789999999999999885 7889999999999999999987 9999999999999975 677776 9999999999
Q ss_pred EecCccccccchhhhccCCCCeeecccccccCccccCCCCCCcccchhhhhccccccceeeeecCCchhHHhhhhhhhHH
Q 001999 597 DVRHTRIQCLPSEIGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSNIISKLCLLEELIIEVLDPSDRRWKQNVESIAG 676 (984)
Q Consensus 597 ~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~ 676 (984)
++++|.+..+|. +.++++|++|+++ ++... .++ .++++++|+.|.+.+. .. ...
T Consensus 118 ~L~~n~l~~~~~-~~~l~~L~~L~l~-----~n~l~-------~~~--~~~~l~~L~~L~l~~~-~~----------~~~ 171 (466)
T 1o6v_A 118 TLFNNQITDIDP-LKNLTNLNRLELS-----SNTIS-------DIS--ALSGLTSLQQLSFGNQ-VT----------DLK 171 (466)
T ss_dssp ECCSSCCCCCGG-GTTCTTCSEEEEE-----EEEEC-------CCG--GGTTCTTCSEEEEEES-CC----------CCG
T ss_pred ECCCCCCCCChH-HcCCCCCCEEECC-----CCccC-------CCh--hhccCCcccEeecCCc-cc----------Cch
Confidence 999999999876 8999999999999 54432 244 3789999999998641 11 112
Q ss_pred HhhccCCCceEEEecCCcchhhhhhhcccccCCCCCCCCCCcceeEEEecccCccceeccccccccccccceEEc-cCCC
Q 001999 677 EIAALEQLTTLHFYFPTIKCFKTFINRRKSVNGNKSRHGDNFKSFNIVVGYPQSTSLLAGFDVSEWSAEKHLRFS-AGVE 755 (984)
Q Consensus 677 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~l~~~~~p~~~~L~~L~l~-~~~~ 755 (984)
.+..+++|+.|+++.+....++. +..++.|+.|.+. +...
T Consensus 172 ~~~~l~~L~~L~l~~n~l~~~~~---------------------------------------l~~l~~L~~L~l~~n~l~ 212 (466)
T 1o6v_A 172 PLANLTTLERLDISSNKVSDISV---------------------------------------LAKLTNLESLIATNNQIS 212 (466)
T ss_dssp GGTTCTTCCEEECCSSCCCCCGG---------------------------------------GGGCTTCSEEECCSSCCC
T ss_pred hhccCCCCCEEECcCCcCCCChh---------------------------------------hccCCCCCEEEecCCccc
Confidence 38889999999998765443221 1223347788887 3334
Q ss_pred CchhHHHHHhhhccceeeccccccccccccccccccccCeeEEcccCCceEEecCCCCCcccCCCcceeecccccccccc
Q 001999 756 EIPGEFLTILKQAYSFELIGSQYAVNLSNFGVDNLVRLQACVIEDCNEMTSIIDGNHRGVVPFQGLNNLHIKNLPKLMHI 835 (984)
Q Consensus 756 ~l~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~i 835 (984)
++.+ ...+++|+.|.+.++. +..++ .+..+++|+.|++++|. +..++. ...+++|+.|.++++. +..+
T Consensus 213 ~~~~--~~~l~~L~~L~l~~n~-l~~~~--~l~~l~~L~~L~l~~n~-l~~~~~-----~~~l~~L~~L~l~~n~-l~~~ 280 (466)
T 1o6v_A 213 DITP--LGILTNLDELSLNGNQ-LKDIG--TLASLTNLTDLDLANNQ-ISNLAP-----LSGLTKLTELKLGANQ-ISNI 280 (466)
T ss_dssp CCGG--GGGCTTCCEEECCSSC-CCCCG--GGGGCTTCSEEECCSSC-CCCCGG-----GTTCTTCSEEECCSSC-CCCC
T ss_pred cccc--ccccCCCCEEECCCCC-cccch--hhhcCCCCCEEECCCCc-cccchh-----hhcCCCCCEEECCCCc-cCcc
Confidence 4444 4567888999887764 33344 35679999999999865 333332 3356999999999874 3333
Q ss_pred cccccccCcccccceeeecccccccccCcHHHHhhcccccEEeecccchhHHHhhcCcccccCCCCcccEeeccCCcccc
Q 001999 836 WVGPIASGSLNSLRTLRVKICHSIKTLFSKEMVAQLNELQDLQVEDCQMIEEIVEAGTVLAIGEFPKLKTLELIDLPKLS 915 (984)
Q Consensus 836 ~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~L~~L~L~~c~~L~ 915 (984)
. +...+++|+.|++++| .++.+ ..+..+++|++|++++|... . .. .+..+++|++|++++| .++
T Consensus 281 ~----~~~~l~~L~~L~L~~n-~l~~~---~~~~~l~~L~~L~L~~n~l~-~-----~~-~~~~l~~L~~L~l~~n-~l~ 344 (466)
T 1o6v_A 281 S----PLAGLTALTNLELNEN-QLEDI---SPISNLKNLTYLTLYFNNIS-D-----IS-PVSSLTKLQRLFFYNN-KVS 344 (466)
T ss_dssp G----GGTTCTTCSEEECCSS-CCSCC---GGGGGCTTCSEEECCSSCCS-C-----CG-GGGGCTTCCEEECCSS-CCC
T ss_pred c----cccCCCccCeEEcCCC-cccCc---hhhcCCCCCCEEECcCCcCC-C-----ch-hhccCccCCEeECCCC-ccC
Confidence 1 2467999999999999 78887 33789999999999999752 1 11 2678999999999997 577
Q ss_pred ccCCCCccCCCCcceEeecccccccccCcCCcCCcCcceeechHHhhhhc
Q 001999 916 TICNSLLLPWPSLETIKIKACNALKSFPSTFKNTTMLKVIKGDQAWFDQL 965 (984)
Q Consensus 916 ~i~~~~~~~l~sL~~L~i~~C~~L~~lp~~~~~l~~L~~l~~~~~~w~~l 965 (984)
.++. +..+++|+.|++++|+ +..++. +..+++|+.++...+-|.++
T Consensus 345 ~~~~--l~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 345 DVSS--LANLTNINWLSAGHNQ-ISDLTP-LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp CCGG--GTTCTTCCEEECCSSC-CCBCGG-GTTCTTCCEEECCCEEEECC
T ss_pred Cchh--hccCCCCCEEeCCCCc-cCccch-hhcCCCCCEEeccCCcccCC
Confidence 7753 7789999999999998 555544 88899999999988877764
No 31
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.88 E-value=4.9e-22 Score=247.92 Aligned_cols=172 Identities=18% Similarity=0.156 Sum_probs=128.6
Q ss_pred EeeeccCCCCCCCCCCCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCC-CCccC-CcchhcccccCeEecCCCcc
Q 001999 502 KLSLFGFPSSTLPDMPNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDT-SIRCL-PPSISRLINLNALFLRSCSL 579 (984)
Q Consensus 502 ~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~-~i~~l-p~~i~~l~~L~~L~L~~c~~ 579 (984)
.+..+++++..+|. -.++|++|++++|.+..+++..|.++++|++|+|++| .+..+ |..++++++|++|+|++|..
T Consensus 8 ~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l 85 (844)
T 3j0a_A 8 IAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKI 85 (844)
T ss_dssp EEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCC
T ss_pred EEEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcC
Confidence 44555677777776 5578999999999988876666899999999999998 44566 67889999999999999765
Q ss_pred cccCchhhhccCCCcEEEecCccccc-cchh--hhccCCCCeeecccccccCccccCCCCCCcccchhhhhcccccccee
Q 001999 580 LFQLPKEIRYLQKLEILDVRHTRIQC-LPSE--IGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSNIISKLCLLEELI 656 (984)
Q Consensus 580 l~~lp~~i~~L~~L~~L~l~~~~l~~-lp~~--~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~~L~~L~~L~ 656 (984)
....|..++++++|++|++++|.+.. +|.. ++++++|++|+++ +|.... ..+...++++++|++|+
T Consensus 86 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls-----~N~l~~------~~~~~~~~~L~~L~~L~ 154 (844)
T 3j0a_A 86 YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLS-----KNQIRS------LYLHPSFGKLNSLKSID 154 (844)
T ss_dssp CEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEE-----SCCCCC------CCCCGGGGTCSSCCEEE
T ss_pred cccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECC-----CCcccc------cccchhHhhCCCCCEEE
Confidence 44558889999999999999998874 5555 8899999999998 554433 22334588999999999
Q ss_pred eeecCCchhHHhhhhhhhHHHhhcc--CCCceEEEecCCc
Q 001999 657 IEVLDPSDRRWKQNVESIAGEIAAL--EQLTTLHFYFPTI 694 (984)
Q Consensus 657 l~~~~~~~~~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~ 694 (984)
+.+..... .....+..+ ++|+.|+++.+..
T Consensus 155 Ls~N~i~~--------~~~~~l~~l~~~~L~~L~L~~n~l 186 (844)
T 3j0a_A 155 FSSNQIFL--------VCEHELEPLQGKTLSFFSLAANSL 186 (844)
T ss_dssp EESSCCCC--------CCSGGGHHHHHCSSCCCEECCSBS
T ss_pred CCCCcCCe--------eCHHHcccccCCccceEECCCCcc
Confidence 88644321 122233333 7888898886654
No 32
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.87 E-value=1e-21 Score=233.86 Aligned_cols=408 Identities=12% Similarity=0.080 Sum_probs=273.3
Q ss_pred hhhhccCeEeeeccCCCCCCC--CCCCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCcc--CCcchhccccc
Q 001999 494 EEEWKDTKKLSLFGFPSSTLP--DMPNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRC--LPPSISRLINL 569 (984)
Q Consensus 494 ~~~~~~~r~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~--lp~~i~~l~~L 569 (984)
....++++.|.+++|.+..++ .+..+++|++|++++|.+..++...|.++++|++|++++|.++. .|..++++++|
T Consensus 46 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L 125 (549)
T 2z81_A 46 LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNL 125 (549)
T ss_dssp TSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTC
T ss_pred hhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCc
Confidence 445678999999999998865 36889999999999999999998889999999999999999985 46789999999
Q ss_pred CeEecCCCcccccCc-hhhhccCCCcEEEecCccccc-cchhhhccCCCCeeecccccccCccccCCCCCCcccchhhhh
Q 001999 570 NALFLRSCSLLFQLP-KEIRYLQKLEILDVRHTRIQC-LPSEIGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSNIIS 647 (984)
Q Consensus 570 ~~L~L~~c~~l~~lp-~~i~~L~~L~~L~l~~~~l~~-lp~~~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~ 647 (984)
++|++++|..+..+| ..++++++|++|++++|.+.. .|..++.+++|++|+++ .+... .+|...++
T Consensus 126 ~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~-----~n~~~-------~~~~~~~~ 193 (549)
T 2z81_A 126 QTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLH-----LSESA-------FLLEIFAD 193 (549)
T ss_dssp CEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEE-----CSBST-------THHHHHHH
T ss_pred cEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecc-----cCccc-------ccchhhHh
Confidence 999999987677776 579999999999999999884 78889999999999998 44332 36656567
Q ss_pred ccccccceeeeecCCchhHH-------------------h----hhhhhhHHHhhccCCCceEEEecCCcchhhhhhh--
Q 001999 648 KLCLLEELIIEVLDPSDRRW-------------------K----QNVESIAGEIAALEQLTTLHFYFPTIKCFKTFIN-- 702 (984)
Q Consensus 648 ~L~~L~~L~l~~~~~~~~~~-------------------~----~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-- 702 (984)
.+++|+.|++.+.......+ + .........+..+++|+.++++.+..........
T Consensus 194 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~ 273 (549)
T 2z81_A 194 ILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSE 273 (549)
T ss_dssp STTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCT
T ss_pred hcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccc
Confidence 89999999998654432100 0 0001112222344555555554433222110000
Q ss_pred -----ccc-c-----cCCCCCCC-----------CCCcceeEEEecccCccceeccccccccccccceEEccCCCCchhH
Q 001999 703 -----RRK-S-----VNGNKSRH-----------GDNFKSFNIVVGYPQSTSLLAGFDVSEWSAEKHLRFSAGVEEIPGE 760 (984)
Q Consensus 703 -----~~~-~-----~~~~~~~~-----------~~~~l~~~~~~g~~~~~~~l~~~~~p~~~~L~~L~l~~~~~~l~~~ 760 (984)
... + .....+.. ....++...+.+.. ...+... -+..++.|+.|.++ ++.-....
T Consensus 274 ~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~-l~~ip~~-~~~~l~~L~~L~Ls-~N~l~~~~ 350 (549)
T 2z81_A 274 SDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK-VFLVPCS-FSQHLKSLEFLDLS-ENLMVEEY 350 (549)
T ss_dssp TTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSC-CCCCCHH-HHHHCTTCCEEECC-SSCCCHHH
T ss_pred hhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCc-cccCCHH-HHhcCccccEEEcc-CCcccccc
Confidence 000 0 00000000 00011111122111 0010000 01134568899998 43322111
Q ss_pred -----HHHHhhhccceeeccccccccccc--cccccccccCeeEEcccCCceEEecCCCCCcccCCCcceeecccccccc
Q 001999 761 -----FLTILKQAYSFELIGSQYAVNLSN--FGVDNLVRLQACVIEDCNEMTSIIDGNHRGVVPFQGLNNLHIKNLPKLM 833 (984)
Q Consensus 761 -----~~~~l~~L~~L~l~~~~~~~~l~~--~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~L~~L~l~~~~~l~ 833 (984)
.+..+++|+.|++.++.. ..++. ..+..+++|+.|+++++ .++.++.. ...+++|+.|+++++. +.
T Consensus 351 ~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~----~~~~~~L~~L~Ls~N~-l~ 423 (549)
T 2z81_A 351 LKNSACKGAWPSLQTLVLSQNHL-RSMQKTGEILLTLKNLTSLDISRN-TFHPMPDS----CQWPEKMRFLNLSSTG-IR 423 (549)
T ss_dssp HHHHTCTTSSTTCCEEECTTSCC-CCHHHHHHHGGGCTTCCEEECTTC-CCCCCCSC----CCCCTTCCEEECTTSC-CS
T ss_pred ccchhhhhccccCcEEEccCCcc-cccccchhhhhcCCCCCEEECCCC-CCccCChh----hcccccccEEECCCCC-cc
Confidence 134567888998877633 33332 23667999999999986 56666543 2346899999999975 44
Q ss_pred cccccccccCcccccceeeecccccccccCcHHHHhhcccccEEeecccchhHHHhhcCcccccCCCCcccEeeccCCcc
Q 001999 834 HIWVGPIASGSLNSLRTLRVKICHSIKTLFSKEMVAQLNELQDLQVEDCQMIEEIVEAGTVLAIGEFPKLKTLELIDLPK 913 (984)
Q Consensus 834 ~i~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~L~~L~L~~c~~ 913 (984)
.+. ...+++|+.|++++| +++.. ...+++|++|++++|.. +. ++. ...+++|++|+|+++ .
T Consensus 424 ~l~-----~~~~~~L~~L~Ls~N-~l~~~-----~~~l~~L~~L~Ls~N~l-~~-----ip~-~~~l~~L~~L~Ls~N-~ 484 (549)
T 2z81_A 424 VVK-----TCIPQTLEVLDVSNN-NLDSF-----SLFLPRLQELYISRNKL-KT-----LPD-ASLFPVLLVMKISRN-Q 484 (549)
T ss_dssp CCC-----TTSCTTCSEEECCSS-CCSCC-----CCCCTTCCEEECCSSCC-SS-----CCC-GGGCTTCCEEECCSS-C
T ss_pred ccc-----chhcCCceEEECCCC-Chhhh-----cccCChhcEEECCCCcc-Cc-----CCC-cccCccCCEEecCCC-c
Confidence 432 123479999999999 78877 25899999999999864 32 332 357899999999995 6
Q ss_pred ccccCCCCccCCCCcceEeeccccccccc
Q 001999 914 LSTICNSLLLPWPSLETIKIKACNALKSF 942 (984)
Q Consensus 914 L~~i~~~~~~~l~sL~~L~i~~C~~L~~l 942 (984)
++.++...+..+++|+.|++++|+-....
T Consensus 485 l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 513 (549)
T 2z81_A 485 LKSVPDGIFDRLTSLQKIWLHTNPWDCSC 513 (549)
T ss_dssp CCCCCTTGGGGCTTCCEEECCSSCBCCCH
T ss_pred cCCcCHHHHhcCcccCEEEecCCCccCCC
Confidence 88877645788999999999999843333
No 33
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.87 E-value=7.3e-22 Score=233.28 Aligned_cols=397 Identities=12% Similarity=0.063 Sum_probs=260.5
Q ss_pred hhhccCeEeeeccCCCCCCC--CCCCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCcc--CCcchhcccccC
Q 001999 495 EEWKDTKKLSLFGFPSSTLP--DMPNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRC--LPPSISRLINLN 570 (984)
Q Consensus 495 ~~~~~~r~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~--lp~~i~~l~~L~ 570 (984)
...++++.|.+++|.+..++ .+..+++|++|++++|.+..+|.. .+++|++|+|++|.++. +|..++.+++|+
T Consensus 42 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~ 118 (520)
T 2z7x_B 42 LSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLK 118 (520)
T ss_dssp TTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCC
T ss_pred cccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc---ccCCccEEeccCCccccccchhhhccCCcce
Confidence 34578999999999998863 468899999999999999998875 79999999999999986 578999999999
Q ss_pred eEecCCCcccccCchhhhccCCC--cEEEecCccc--c-ccchhhhc--------------------------cCCCCee
Q 001999 571 ALFLRSCSLLFQLPKEIRYLQKL--EILDVRHTRI--Q-CLPSEIGQ--------------------------LIKLKCL 619 (984)
Q Consensus 571 ~L~L~~c~~l~~lp~~i~~L~~L--~~L~l~~~~l--~-~lp~~~~~--------------------------L~~L~~L 619 (984)
+|++++|. +.. ..++.+++| ++|++++|.+ . ..|..+.. +++|+.|
T Consensus 119 ~L~L~~n~-l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L 195 (520)
T 2z7x_B 119 FLGLSTTH-LEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELS 195 (520)
T ss_dssp EEEEEESS-CCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEEC
T ss_pred EEEecCcc-cch--hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeec
Confidence 99999975 443 457888888 9999999988 3 66777766 4556666
Q ss_pred eccccccc-CccccCCCCCCcccchhhhhccccccceeeeecCCchhHHhhhhhhhHHHhhccCCCceEEEecCCcc-hh
Q 001999 620 RVSWVENV-GNHTHAGAWPGEMISSNIISKLCLLEELIIEVLDPSDRRWKQNVESIAGEIAALEQLTTLHFYFPTIK-CF 697 (984)
Q Consensus 620 ~l~~~~~~-~~~~l~~~~~~~~ip~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~ 697 (984)
+++++... .+....+ .+| .++.+++|+.|.+..++.... ........+ ..++|+.|+++.+... .+
T Consensus 196 ~l~~n~~~~~~~~~~~-----~~~--~l~~l~~L~~L~l~~~~l~~~----~~~~~~~~~-~~~~L~~L~l~~n~l~~~~ 263 (520)
T 2z7x_B 196 NIKCVLEDNKCSYFLS-----ILA--KLQTNPKLSNLTLNNIETTWN----SFIRILQLV-WHTTVWYFSISNVKLQGQL 263 (520)
T ss_dssp CEEECCSTTTTHHHHH-----HHH--GGGGCTTCCEEEEEEEEEEHH----HHHHHHHHH-HTSSCSEEEEEEEEEESCC
T ss_pred cccccccccccceeec-----chh--hhccccchhhccccccccCHH----HHHHHHHHh-hhCcccEEEeecccccCcc
Confidence 66522100 0000110 122 378899999999987655432 111222222 3569999999877544 22
Q ss_pred hhhhhcccccCCCCCCCCCCcceeEEEecccCccceecccccccc---ccccceEEccCCCCchhHHHHHhhhccceeec
Q 001999 698 KTFINRRKSVNGNKSRHGDNFKSFNIVVGYPQSTSLLAGFDVSEW---SAEKHLRFSAGVEEIPGEFLTILKQAYSFELI 774 (984)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~l~~~~~p~~---~~L~~L~l~~~~~~l~~~~~~~l~~L~~L~l~ 774 (984)
+...... .......+....+.+..- . ++...+..+ ..++.|.++ ++.-.+......+++|+.|++.
T Consensus 264 p~~~~~~-------~~~~l~~L~~l~l~~n~~--~-~p~~~~~~~~~~~~L~~L~l~-~n~l~~~~~~~~l~~L~~L~Ls 332 (520)
T 2z7x_B 264 DFRDFDY-------SGTSLKALSIHQVVSDVF--G-FPQSYIYEIFSNMNIKNFTVS-GTRMVHMLCPSKISPFLHLDFS 332 (520)
T ss_dssp CCCCCCC-------CSCCCCEEEEEEEEECCC--C-SCTHHHHHHHHTCCCSEEEEE-SSCCCCCCCCSSCCCCCEEECC
T ss_pred ccchhhc-------ccccCceeEeccccccce--e-cchhhhhcccccCceeEEEcC-CCccccccchhhCCcccEEEeE
Confidence 2211000 001111222222222111 1 000001111 347788887 3322111111356788888887
Q ss_pred cccccccccccccccccccCeeEEcccCCceEEecCCCCCcccCCCcceeecccccccccccccccccCcccccceeeec
Q 001999 775 GSQYAVNLSNFGVDNLVRLQACVIEDCNEMTSIIDGNHRGVVPFQGLNNLHIKNLPKLMHIWVGPIASGSLNSLRTLRVK 854 (984)
Q Consensus 775 ~~~~~~~l~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~ 854 (984)
++.....++. .+.++++|+.|+++++. ++.++... .....+++|+.|+++++.-...++.. ....+++|+.|+++
T Consensus 333 ~n~l~~~~~~-~~~~l~~L~~L~L~~N~-l~~l~~~~-~~~~~l~~L~~L~Ls~N~l~~~l~~~--~~~~l~~L~~L~Ls 407 (520)
T 2z7x_B 333 NNLLTDTVFE-NCGHLTELETLILQMNQ-LKELSKIA-EMTTQMKSLQQLDISQNSVSYDEKKG--DCSWTKSLLSLNMS 407 (520)
T ss_dssp SSCCCTTTTT-TCCCCSSCCEEECCSSC-CCBHHHHH-HHHTTCTTCCEEECCSSCCBCCGGGC--SCCCCTTCCEEECC
T ss_pred CCccChhhhh-hhccCCCCCEEEccCCc-cCccccch-HHHhhCCCCCEEECCCCcCCcccccc--hhccCccCCEEECc
Confidence 7755443443 56789999999999864 33322100 01234699999999997533324322 13468999999999
Q ss_pred ccccccccCcHHHHhhc-ccccEEeecccchhHHHhhcCcccccCCCCcccEeeccCCccccccCCCCccCCCCcceEee
Q 001999 855 ICHSIKTLFSKEMVAQL-NELQDLQVEDCQMIEEIVEAGTVLAIGEFPKLKTLELIDLPKLSTICNSLLLPWPSLETIKI 933 (984)
Q Consensus 855 ~c~~L~~l~~~~~l~~l-~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~L~~L~L~~c~~L~~i~~~~~~~l~sL~~L~i 933 (984)
+| .++... ...+ ++|+.|++++|.. + .++..+..+++|++|+|+++ .++.++...+..+++|+.|++
T Consensus 408 ~N-~l~~~~----~~~l~~~L~~L~Ls~N~l-~-----~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l 475 (520)
T 2z7x_B 408 SN-ILTDTI----FRCLPPRIKVLDLHSNKI-K-----SIPKQVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWL 475 (520)
T ss_dssp SS-CCCGGG----GGSCCTTCCEEECCSSCC-C-----CCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred CC-CCCcch----hhhhcccCCEEECCCCcc-c-----ccchhhhcCCCCCEEECCCC-cCCccCHHHhccCCcccEEEC
Confidence 99 675541 1233 7999999999865 2 45556668999999999996 688888844778999999999
Q ss_pred cccc
Q 001999 934 KACN 937 (984)
Q Consensus 934 ~~C~ 937 (984)
++|+
T Consensus 476 ~~N~ 479 (520)
T 2z7x_B 476 HTNP 479 (520)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 9987
No 34
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.87 E-value=1.3e-20 Score=228.65 Aligned_cols=430 Identities=17% Similarity=0.133 Sum_probs=243.6
Q ss_pred hccCeEeeeccCCCCCCCC--CCCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCCc-chhcccccCeEe
Q 001999 497 WKDTKKLSLFGFPSSTLPD--MPNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLPP-SISRLINLNALF 573 (984)
Q Consensus 497 ~~~~r~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~L~~L~ 573 (984)
+..+++|.+++|.+..++. +..+++|++|++++|.++.++++.|.++++|++|+|++|.++.+|. .+++|.+|++|+
T Consensus 51 p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 51 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence 3579999999999998764 6889999999999999999998889999999999999999999975 579999999999
Q ss_pred cCCCcccccCch-hhhccCCCcEEEecCcccc--ccchhhhccCCCCeeecccccccCccccCCCCCCcccchhhhhccc
Q 001999 574 LRSCSLLFQLPK-EIRYLQKLEILDVRHTRIQ--CLPSEIGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSNIISKLC 650 (984)
Q Consensus 574 L~~c~~l~~lp~-~i~~L~~L~~L~l~~~~l~--~lp~~~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~~L~ 650 (984)
|++|. ++.+|. .+++|++|++|++++|.+. .+|..++.+++|++|+++ ++.... ++...+..+.
T Consensus 131 Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~-----~N~l~~-------~~~~~l~~L~ 197 (635)
T 4g8a_A 131 AVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS-----SNKIQS-------IYCTDLRVLH 197 (635)
T ss_dssp CTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECC-----SSCCCE-------ECGGGGHHHH
T ss_pred CCCCc-CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhccc-----Cccccc-------cccccccchh
Confidence 99974 677765 5899999999999999987 457889999999999998 443322 3333344444
Q ss_pred cccce----eeeecCCch--h-HH------------h-hhhhhhHHHhhccCCCceEEEecCCcch-----------hhh
Q 001999 651 LLEEL----IIEVLDPSD--R-RW------------K-QNVESIAGEIAALEQLTTLHFYFPTIKC-----------FKT 699 (984)
Q Consensus 651 ~L~~L----~l~~~~~~~--~-~~------------~-~~~~~~~~~l~~l~~L~~L~l~~~~~~~-----------~~~ 699 (984)
+++.+ .+....... . .+ + .........+..+..++...+....... +..
T Consensus 198 ~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~ 277 (635)
T 4g8a_A 198 QMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEG 277 (635)
T ss_dssp TCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGG
T ss_pred hhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccccccccc
Confidence 33321 111000000 0 00 0 0012223344555666555443221100 000
Q ss_pred hhh--ccc------------ccCCCC-------------------CCCCCCcceeEEEecccCccceeccccccc-----
Q 001999 700 FIN--RRK------------SVNGNK-------------------SRHGDNFKSFNIVVGYPQSTSLLAGFDVSE----- 741 (984)
Q Consensus 700 ~~~--~~~------------~~~~~~-------------------~~~~~~~l~~~~~~g~~~~~~~l~~~~~p~----- 741 (984)
... ... ...... +......+....+.+.. +.......
T Consensus 278 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-----~~~~~~~~l~~L~ 352 (635)
T 4g8a_A 278 LCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCK-----FGQFPTLKLKSLK 352 (635)
T ss_dssp GGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCE-----ESSCCCCBCTTCC
T ss_pred ccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhccccc-----ccCcCcccchhhh
Confidence 000 000 000000 00000000001111000 00000011
Q ss_pred -----------------cccccceEEc-cCCCCc--hhHHHHHhhhccceeeccccccccccccccccccccCeeEEccc
Q 001999 742 -----------------WSAEKHLRFS-AGVEEI--PGEFLTILKQAYSFELIGSQYAVNLSNFGVDNLVRLQACVIEDC 801 (984)
Q Consensus 742 -----------------~~~L~~L~l~-~~~~~l--~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~ 801 (984)
++.++.|.++ +.+... .......+.+++.+.+..+..... +. .+..+++|+.+++..+
T Consensus 353 ~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~-~~-~~~~l~~L~~l~l~~~ 430 (635)
T 4g8a_A 353 RLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITM-SS-NFLGLEQLEHLDFQHS 430 (635)
T ss_dssp EEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEE-CS-CCTTCTTCCEEECTTS
T ss_pred hcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccc-cc-cccccccccchhhhhc
Confidence 1223333333 111100 011122222333333322211111 11 2334555555555543
Q ss_pred CCceEEecCCCCCcccCCCcceeecccccccccccccccccCcccccceeeecccccccccCcHHHHhhcccccEEeecc
Q 001999 802 NEMTSIIDGNHRGVVPFQGLNNLHIKNLPKLMHIWVGPIASGSLNSLRTLRVKICHSIKTLFSKEMVAQLNELQDLQVED 881 (984)
Q Consensus 802 ~~l~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~l~~l~~L~~L~l~~ 881 (984)
......+. .....+++|+.+.++++. +..+.. .....+++|+.|++++|..+... .+..+..+++|++|++++
T Consensus 431 ~~~~~~~~---~~~~~l~~l~~l~ls~n~-l~~~~~--~~~~~~~~L~~L~Ls~N~~~~~~-~~~~~~~l~~L~~L~Ls~ 503 (635)
T 4g8a_A 431 NLKQMSEF---SVFLSLRNLIYLDISHTH-TRVAFN--GIFNGLSSLEVLKMAGNSFQENF-LPDIFTELRNLTFLDLSQ 503 (635)
T ss_dssp EEESTTSS---CTTTTCTTCCEEECTTSC-CEECCT--TTTTTCTTCCEEECTTCEEGGGE-ECSCCTTCTTCCEEECTT
T ss_pred cccccccc---cccccccccccccccccc-cccccc--cccccchhhhhhhhhhccccccc-CchhhhhccccCEEECCC
Confidence 32211111 112234556666665532 222111 12246788999999988545544 345678889999999998
Q ss_pred cchhHHHhhcCcccccCCCCcccEeeccCCccccccCCCCccCCCCcceEeeccccccccc-CcCCcCC-cCcceeechH
Q 001999 882 CQMIEEIVEAGTVLAIGEFPKLKTLELIDLPKLSTICNSLLLPWPSLETIKIKACNALKSF-PSTFKNT-TMLKVIKGDQ 959 (984)
Q Consensus 882 c~~l~~i~~~~~~~~~~~~~~L~~L~L~~c~~L~~i~~~~~~~l~sL~~L~i~~C~~L~~l-p~~~~~l-~~L~~l~~~~ 959 (984)
|.. +.+ .+..+..+++|++|+|+++ +++.++...+..+++|+.|+++++. ++.+ |..+.++ ++|+.|+...
T Consensus 504 N~L-~~l----~~~~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~l~~~L~~L~L~~ 576 (635)
T 4g8a_A 504 CQL-EQL----SPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNH-IMTSKKQELQHFPSSLAFLNLTQ 576 (635)
T ss_dssp SCC-CEE----CTTTTTTCTTCCEEECTTS-CCCBCCCGGGTTCTTCCEEECTTSC-CCBCCSSCTTCCCTTCCEEECTT
T ss_pred Ccc-CCc----ChHHHcCCCCCCEEECCCC-cCCCCChhHHhCCCCCCEEECCCCc-CCCCCHHHHHhhhCcCCEEEeeC
Confidence 864 222 2345678899999999985 6888876467788999999999877 5555 5667777 5788887654
Q ss_pred H
Q 001999 960 A 960 (984)
Q Consensus 960 ~ 960 (984)
+
T Consensus 577 N 577 (635)
T 4g8a_A 577 N 577 (635)
T ss_dssp C
T ss_pred C
Confidence 4
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.86 E-value=5.2e-21 Score=223.28 Aligned_cols=315 Identities=18% Similarity=0.208 Sum_probs=237.4
Q ss_pred eEEEecCcccCCCcchHhhcCCCccEEeccCCCCccC-CcchhcccccCeEecCCCcccccCchhhhccCCCcEEEecCc
Q 001999 523 LTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCL-PPSISRLINLNALFLRSCSLLFQLPKEIRYLQKLEILDVRHT 601 (984)
Q Consensus 523 ~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~~ 601 (984)
+.++.+++.+..+|..+ .+++++|+|++|.++.+ |..+..+++|++|+|++|......|..++++++|++|++++|
T Consensus 14 ~~v~c~~~~l~~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCSSCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCcCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 56788888899999863 36899999999999987 568999999999999997544445788999999999999999
Q ss_pred cccccchh-hhccCCCCeeecccccccCccccCCCCCCcccchhhhhccccccceeeeecCCchhHHhhhhhhhHHHhhc
Q 001999 602 RIQCLPSE-IGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSNIISKLCLLEELIIEVLDPSDRRWKQNVESIAGEIAA 680 (984)
Q Consensus 602 ~l~~lp~~-~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~ 680 (984)
.+..+|.. +.++++|++|+++ ++.... ++...+.++++|+.|++.+.... ......+..
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls-----~n~i~~-------~~~~~~~~l~~L~~L~l~~n~l~--------~~~~~~~~~ 150 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDIS-----ENKIVI-------LLDYMFQDLYNLKSLEVGDNDLV--------YISHRAFSG 150 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECT-----TSCCCE-------ECTTTTTTCTTCCEEEECCTTCC--------EECTTSSTT
T ss_pred cCCccCcccccCCCCCCEEECC-----CCcccc-------CChhHccccccCCEEECCCCccc--------eeChhhccC
Confidence 99999875 6899999999998 554433 44455788888998888763332 112234566
Q ss_pred cCCCceEEEecCCcchhhhhhhcccccCCCCCCCCCCcceeEEEecccCccceeccccccccccccceEEccCCCCchhH
Q 001999 681 LEQLTTLHFYFPTIKCFKTFINRRKSVNGNKSRHGDNFKSFNIVVGYPQSTSLLAGFDVSEWSAEKHLRFSAGVEEIPGE 760 (984)
Q Consensus 681 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~l~~~~~p~~~~L~~L~l~~~~~~l~~~ 760 (984)
+++|+.|+++.+.. ..++..
T Consensus 151 l~~L~~L~l~~n~l------------------------------------------------------------~~~~~~ 170 (477)
T 2id5_A 151 LNSLEQLTLEKCNL------------------------------------------------------------TSIPTE 170 (477)
T ss_dssp CTTCCEEEEESCCC------------------------------------------------------------SSCCHH
T ss_pred CCCCCEEECCCCcC------------------------------------------------------------cccChh
Confidence 77777777763321 111111
Q ss_pred HHHHhhhccceeeccccccccccccccccccccCeeEEcccCCceEEecCCCCCcccCCCcceeeccccccccccccccc
Q 001999 761 FLTILKQAYSFELIGSQYAVNLSNFGVDNLVRLQACVIEDCNEMTSIIDGNHRGVVPFQGLNNLHIKNLPKLMHIWVGPI 840 (984)
Q Consensus 761 ~~~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~ 840 (984)
.+.++++|+.|+++++ .+..++... ...+++|+.|++++++.+..+....
T Consensus 171 -------------------------~l~~l~~L~~L~l~~n-~i~~~~~~~---~~~l~~L~~L~l~~~~~~~~~~~~~- 220 (477)
T 2id5_A 171 -------------------------ALSHLHGLIVLRLRHL-NINAIRDYS---FKRLYRLKVLEISHWPYLDTMTPNC- 220 (477)
T ss_dssp -------------------------HHTTCTTCCEEEEESC-CCCEECTTC---SCSCTTCCEEEEECCTTCCEECTTT-
T ss_pred -------------------------HhcccCCCcEEeCCCC-cCcEeChhh---cccCcccceeeCCCCccccccCccc-
Confidence 2445789999999885 445554332 3346899999999988777653322
Q ss_pred ccCcccccceeeecccccccccCcHHHHhhcccccEEeecccchhHHHhhcCcccccCCCCcccEeeccCCccccccCCC
Q 001999 841 ASGSLNSLRTLRVKICHSIKTLFSKEMVAQLNELQDLQVEDCQMIEEIVEAGTVLAIGEFPKLKTLELIDLPKLSTICNS 920 (984)
Q Consensus 841 ~~~~l~~L~~L~l~~c~~L~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~L~~L~L~~c~~L~~i~~~ 920 (984)
...++|+.|++++| +++.+ +...+..+++|++|++++|.. +. -....+..+++|++|+|+++ .++.+...
T Consensus 221 --~~~~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~Ls~n~l-~~----~~~~~~~~l~~L~~L~L~~n-~l~~~~~~ 290 (477)
T 2id5_A 221 --LYGLNLTSLSITHC-NLTAV-PYLAVRHLVYLRFLNLSYNPI-ST----IEGSMLHELLRLQEIQLVGG-QLAVVEPY 290 (477)
T ss_dssp --TTTCCCSEEEEESS-CCCSC-CHHHHTTCTTCCEEECCSSCC-CE----ECTTSCTTCTTCCEEECCSS-CCSEECTT
T ss_pred --ccCccccEEECcCC-ccccc-CHHHhcCccccCeeECCCCcC-Cc----cChhhccccccCCEEECCCC-ccceECHH
Confidence 34569999999999 89888 667789999999999999874 22 12235678999999999995 57777654
Q ss_pred CccCCCCcceEeecccccccccCcC-CcCCcCcceeechHHh
Q 001999 921 LLLPWPSLETIKIKACNALKSFPST-FKNTTMLKVIKGDQAW 961 (984)
Q Consensus 921 ~~~~l~sL~~L~i~~C~~L~~lp~~-~~~l~~L~~l~~~~~~ 961 (984)
.+..+++|+.|++++|. ++.+|.. +..+++|+.++...+-
T Consensus 291 ~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 291 AFRGLNYLRVLNVSGNQ-LTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp TBTTCTTCCEEECCSSC-CSCCCGGGBSCGGGCCEEECCSSC
T ss_pred HhcCcccCCEEECCCCc-CceeCHhHcCCCcccCEEEccCCC
Confidence 77889999999999986 8888764 6788899988765443
No 36
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.86 E-value=1.2e-21 Score=227.34 Aligned_cols=371 Identities=18% Similarity=0.213 Sum_probs=254.0
Q ss_pred eEEEecCcccCCCcchHhhcCCCccEEeccCCCCccC-CcchhcccccCeEecCCCcccccC-chhhhccCCCcEEEecC
Q 001999 523 LTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCL-PPSISRLINLNALFLRSCSLLFQL-PKEIRYLQKLEILDVRH 600 (984)
Q Consensus 523 ~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~c~~l~~l-p~~i~~L~~L~~L~l~~ 600 (984)
+.++..++.+..+|. + .++|++|+|++|.++.+ |..++.+++|++|++++|.....+ |..++++++|++|++++
T Consensus 13 ~~~~c~~~~l~~lp~--l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 13 YNAICINRGLHQVPE--L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp TEEECCSSCCSSCCC--C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred cccCcCCCCcccCCC--C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 356777888888887 2 37899999999999987 778999999999999998654455 56799999999999999
Q ss_pred cccccc-chhhhccCCCCeeecccccccCccccCCCCCCcccc-hhhhhccccccceeeeecCCchhHHhhhhhhhHHH-
Q 001999 601 TRIQCL-PSEIGQLIKLKCLRVSWVENVGNHTHAGAWPGEMIS-SNIISKLCLLEELIIEVLDPSDRRWKQNVESIAGE- 677 (984)
Q Consensus 601 ~~l~~l-p~~~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip-~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~- 677 (984)
|.+..+ |..++++++|++|+++ ++.... .++ ...++++++|++|++.+..... ..+..
T Consensus 89 n~l~~~~~~~~~~l~~L~~L~L~-----~n~l~~------~~~~~~~~~~l~~L~~L~L~~n~l~~--------~~~~~~ 149 (455)
T 3v47_A 89 NQFLQLETGAFNGLANLEVLTLT-----QCNLDG------AVLSGNFFKPLTSLEMLVLRDNNIKK--------IQPASF 149 (455)
T ss_dssp CTTCEECTTTTTTCTTCCEEECT-----TSCCBT------HHHHSSTTTTCTTCCEEECCSSBCCS--------CCCCGG
T ss_pred CccCccChhhccCcccCCEEeCC-----CCCCCc------cccCcccccCcccCCEEECCCCccCc--------cCcccc
Confidence 999866 7789999999999999 554322 122 2347889999999998754331 12223
Q ss_pred hhccCCCceEEEecCCcchhhhhhhcccccCCCCCCCCCCcceeEEEecccCccceeccccccccccccceEEc-cCCCC
Q 001999 678 IAALEQLTTLHFYFPTIKCFKTFINRRKSVNGNKSRHGDNFKSFNIVVGYPQSTSLLAGFDVSEWSAEKHLRFS-AGVEE 756 (984)
Q Consensus 678 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~l~~~~~p~~~~L~~L~l~-~~~~~ 756 (984)
+..+++|+.|+++.+......... . ..+.. ..++.|.+. +....
T Consensus 150 ~~~l~~L~~L~L~~n~l~~~~~~~----l----------------------------~~l~~---~~L~~L~l~~n~l~~ 194 (455)
T 3v47_A 150 FLNMRRFHVLDLTFNKVKSICEED----L----------------------------LNFQG---KHFTLLRLSSITLQD 194 (455)
T ss_dssp GGGCTTCCEEECTTCCBSCCCTTT----S----------------------------GGGTT---CEEEEEECTTCBCTT
T ss_pred cCCCCcccEEeCCCCcccccChhh----h----------------------------hcccc---ccccccccccCcccc
Confidence 778999999999877654321100 0 00000 113445554 12222
Q ss_pred chhHH--------HHHhhhccceeecccccccccccc--ccccccccCeeEEcccCCceEEecCC--------CCCcccC
Q 001999 757 IPGEF--------LTILKQAYSFELIGSQYAVNLSNF--GVDNLVRLQACVIEDCNEMTSIIDGN--------HRGVVPF 818 (984)
Q Consensus 757 l~~~~--------~~~l~~L~~L~l~~~~~~~~l~~~--~~~~l~~L~~L~l~~~~~l~~i~~~~--------~~~~~~~ 818 (984)
++... ...+++|+.|++.++......+.. .....++|+.|+++++.......... .......
T Consensus 195 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (455)
T 3v47_A 195 MNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEA 274 (455)
T ss_dssp CSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTT
T ss_pred cchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccc
Confidence 22211 112356777877766544333321 11123788888888764332111000 0011124
Q ss_pred CCcceeecccccccccccccccccCcccccceeeecccccccccCcHHHHhhcccccEEeecccchhHHHhhcCcccccC
Q 001999 819 QGLNNLHIKNLPKLMHIWVGPIASGSLNSLRTLRVKICHSIKTLFSKEMVAQLNELQDLQVEDCQMIEEIVEAGTVLAIG 898 (984)
Q Consensus 819 ~~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~ 898 (984)
++|+.|+++++.- ..+. +.....+++|+.|++++| .++.. ++..+..+++|++|++++|.. + .-.+..+.
T Consensus 275 ~~L~~L~l~~n~l-~~~~--~~~~~~l~~L~~L~Ls~n-~l~~~-~~~~~~~l~~L~~L~Ls~N~l-~----~~~~~~~~ 344 (455)
T 3v47_A 275 SGVKTCDLSKSKI-FALL--KSVFSHFTDLEQLTLAQN-EINKI-DDNAFWGLTHLLKLNLSQNFL-G----SIDSRMFE 344 (455)
T ss_dssp SCCCEEECCSSCC-CEEC--TTTTTTCTTCCEEECTTS-CCCEE-CTTTTTTCTTCCEEECCSSCC-C----EECGGGGT
T ss_pred cCceEEEecCccc-cccc--hhhcccCCCCCEEECCCC-ccccc-ChhHhcCcccCCEEECCCCcc-C----CcChhHhc
Confidence 7899999998643 2221 223467899999999999 78877 446788999999999999865 2 12244667
Q ss_pred CCCcccEeeccCCccccccCCCCccCCCCcceEeecccccccccCcC-CcCCcCcceeechHHhhh
Q 001999 899 EFPKLKTLELIDLPKLSTICNSLLLPWPSLETIKIKACNALKSFPST-FKNTTMLKVIKGDQAWFD 963 (984)
Q Consensus 899 ~~~~L~~L~L~~c~~L~~i~~~~~~~l~sL~~L~i~~C~~L~~lp~~-~~~l~~L~~l~~~~~~w~ 963 (984)
.+++|++|+|+++ .++.+....+..+++|++|++++|. ++.+|.. +..+++|+.++...+.|.
T Consensus 345 ~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~ 408 (455)
T 3v47_A 345 NLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWD 408 (455)
T ss_dssp TCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CcccCCEEECCCC-cccccChhhccccccccEEECCCCc-cccCCHhHhccCCcccEEEccCCCcc
Confidence 8999999999996 5777754478889999999999976 8888765 578999999998766543
No 37
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.86 E-value=5.1e-21 Score=220.53 Aligned_cols=169 Identities=15% Similarity=0.163 Sum_probs=139.8
Q ss_pred ChhhhccCeEeeeccCCCCCCCCCCCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCCcchhcccccCeE
Q 001999 493 SEEEWKDTKKLSLFGFPSSTLPDMPNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLPPSISRLINLNAL 572 (984)
Q Consensus 493 ~~~~~~~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L 572 (984)
.....++++.|++++|.+..+|.+..+++|++|++++|.+..+| ++.+++|++|++++|.++.+| ++.+++|++|
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L 111 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYL 111 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEE
T ss_pred ChhHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCceee--cCCCCcCCEE
Confidence 45567899999999999999888888999999999999999886 788999999999999999885 8899999999
Q ss_pred ecCCCcccccCchhhhccCCCcEEEecCccccccchhhhccCCCCeeecccccccCccccCCCCCCcccchhhhhccccc
Q 001999 573 FLRSCSLLFQLPKEIRYLQKLEILDVRHTRIQCLPSEIGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSNIISKLCLL 652 (984)
Q Consensus 573 ~L~~c~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~~L~~L 652 (984)
++++| .++.+| ++++++|++|++++|+++.+| ++.+++|++|+++ .+.... .++ ++.+++|
T Consensus 112 ~L~~N-~l~~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~-----~n~~~~------~~~---~~~l~~L 172 (457)
T 3bz5_A 112 NCDTN-KLTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCH-----LNKKIT------KLD---VTPQTQL 172 (457)
T ss_dssp ECCSS-CCSCCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECT-----TCSCCC------CCC---CTTCTTC
T ss_pred ECCCC-cCCeec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECC-----CCCccc------ccc---cccCCcC
Confidence 99997 467776 899999999999999999875 8899999999998 554333 333 6788999
Q ss_pred cceeeeecCCchhHHhhhhhhhHHHhhccCCCceEEEecCCcch
Q 001999 653 EELIIEVLDPSDRRWKQNVESIAGEIAALEQLTTLHFYFPTIKC 696 (984)
Q Consensus 653 ~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 696 (984)
+.|++.+..... . .+..+++|+.|+++.+....
T Consensus 173 ~~L~ls~n~l~~---------l--~l~~l~~L~~L~l~~N~l~~ 205 (457)
T 3bz5_A 173 TTLDCSFNKITE---------L--DVSQNKLLNRLNCDTNNITK 205 (457)
T ss_dssp CEEECCSSCCCC---------C--CCTTCTTCCEEECCSSCCSC
T ss_pred CEEECCCCccce---------e--ccccCCCCCEEECcCCcCCe
Confidence 999998754431 1 26778899999998665443
No 38
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.85 E-value=1.3e-20 Score=224.66 Aligned_cols=396 Identities=16% Similarity=0.117 Sum_probs=255.1
Q ss_pred ccCeEeeeccCCCCCCC--CCCCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCCcchhcccccCeEecC
Q 001999 498 KDTKKLSLFGFPSSTLP--DMPNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLPPSISRLINLNALFLR 575 (984)
Q Consensus 498 ~~~r~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~ 575 (984)
+.+++|++++|.+..++ .+..+++|++|++++|.+..+++..|.++++|++|+|++|.++.+|.. .+.+|++|+++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls 129 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLS 129 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECC
Confidence 68999999999999886 478999999999999999998777799999999999999999999887 89999999999
Q ss_pred CCcccccC--chhhhccCCCcEEEecCccccccchhhhccCCC--Ceeecccccc--cCc--cccCC-------------
Q 001999 576 SCSLLFQL--PKEIRYLQKLEILDVRHTRIQCLPSEIGQLIKL--KCLRVSWVEN--VGN--HTHAG------------- 634 (984)
Q Consensus 576 ~c~~l~~l--p~~i~~L~~L~~L~l~~~~l~~lp~~~~~L~~L--~~L~l~~~~~--~~~--~~l~~------------- 634 (984)
+|. +..+ |..++++++|++|++++|.+... .+..+++| ++|+++++.. .+. .....
T Consensus 130 ~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n 206 (562)
T 3a79_B 130 FND-FDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPN 206 (562)
T ss_dssp SSC-CSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSS
T ss_pred CCC-ccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCc
Confidence 976 5554 57899999999999999998753 45666666 9999984321 000 00000
Q ss_pred CCCCcccchhhhhccccccceeeeec----------------------------CCchhHHhhhhhhhHHHhhccCCCce
Q 001999 635 AWPGEMISSNIISKLCLLEELIIEVL----------------------------DPSDRRWKQNVESIAGEIAALEQLTT 686 (984)
Q Consensus 635 ~~~~~~ip~~~l~~L~~L~~L~l~~~----------------------------~~~~~~~~~~~~~~~~~l~~l~~L~~ 686 (984)
...+ .++...+.++++|+.|++... +.... ........ ....+|+.
T Consensus 207 ~~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~----~~~~~~~~-~~~~~L~~ 280 (562)
T 3a79_B 207 SLFS-VQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWK----CSVKLFQF-FWPRPVEY 280 (562)
T ss_dssp SCCC-CCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHH----HHHHHHHH-HTTSSEEE
T ss_pred cchh-hhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHH----HHHHHHHh-hhcccccE
Confidence 0000 111122334555555555432 21111 01111112 22348889
Q ss_pred EEEecCCcc-hhhhhhhcccccCCCCCCCCCCcceeEEEecccCccceecccccc--------ccccccceEEccCCCCc
Q 001999 687 LHFYFPTIK-CFKTFINRRKSVNGNKSRHGDNFKSFNIVVGYPQSTSLLAGFDVS--------EWSAEKHLRFSAGVEEI 757 (984)
Q Consensus 687 L~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~l~~~~~p--------~~~~L~~L~l~~~~~~l 757 (984)
|+++.+... .++...... .......+.........- .+| ....++.|.+. ++.-.
T Consensus 281 L~l~~n~l~~~ip~~~~~~-------~~~~L~~L~~~~~~~~~~--------~~p~~~~~~~~~~~~L~~L~l~-~n~~~ 344 (562)
T 3a79_B 281 LNIYNLTITERIDREEFTY-------SETALKSLMIEHVKNQVF--------LFSKEALYSVFAEMNIKMLSIS-DTPFI 344 (562)
T ss_dssp EEEEEEEECSCCCCCCCCC-------CSCSCCEEEEEEEEECCC--------SSCHHHHHHHHHTCCCSEEEEE-SSCCC
T ss_pred EEEeccEeeccccchhhhc-------ccccchheehhhccccee--------ecChhhhhhhhccCcceEEEcc-CCCcc
Confidence 999876543 222111000 001111111111111100 112 01347778887 33221
Q ss_pred hhHHHHHhhhccceeeccccccccccccccccccccCeeEEcccCCceEEecCCCCCcccCCCcceeecccccccccccc
Q 001999 758 PGEFLTILKQAYSFELIGSQYAVNLSNFGVDNLVRLQACVIEDCNEMTSIIDGNHRGVVPFQGLNNLHIKNLPKLMHIWV 837 (984)
Q Consensus 758 ~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~ 837 (984)
+......+++|+.|++.++......+. .+.++++|+.|+++++ .++.++... .....+++|+.|+++++.--..+..
T Consensus 345 ~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~N-~l~~~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~~ 421 (562)
T 3a79_B 345 HMVCPPSPSSFTFLNFTQNVFTDSVFQ-GCSTLKRLQTLILQRN-GLKNFFKVA-LMTKNMSSLETLDVSLNSLNSHAYD 421 (562)
T ss_dssp CCCCCSSCCCCCEEECCSSCCCTTTTT-TCCSCSSCCEEECCSS-CCCBTTHHH-HTTTTCTTCCEEECTTSCCBSCCSS
T ss_pred cccCccCCCCceEEECCCCccccchhh-hhcccCCCCEEECCCC-CcCCcccch-hhhcCCCCCCEEECCCCcCCCccCh
Confidence 111113467788888877755443433 5678999999999985 454432100 1123469999999998753322322
Q ss_pred cccccCcccccceeeecccccccccCcHHHHhhc-ccccEEeecccchhHHHhhcCcccccCCCCcccEeeccCCccccc
Q 001999 838 GPIASGSLNSLRTLRVKICHSIKTLFSKEMVAQL-NELQDLQVEDCQMIEEIVEAGTVLAIGEFPKLKTLELIDLPKLST 916 (984)
Q Consensus 838 ~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~l~~l-~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~L~~L~L~~c~~L~~ 916 (984)
. ....+++|+.|++++| .++.. .+..+ ++|++|++++|.. + .++..+..+++|++|+|+++ .++.
T Consensus 422 ~--~~~~l~~L~~L~l~~n-~l~~~----~~~~l~~~L~~L~L~~N~l-~-----~ip~~~~~l~~L~~L~L~~N-~l~~ 487 (562)
T 3a79_B 422 R--TCAWAESILVLNLSSN-MLTGS----VFRCLPPKVKVLDLHNNRI-M-----SIPKDVTHLQALQELNVASN-QLKS 487 (562)
T ss_dssp C--CCCCCTTCCEEECCSS-CCCGG----GGSSCCTTCSEEECCSSCC-C-----CCCTTTTSSCCCSEEECCSS-CCCC
T ss_pred h--hhcCcccCCEEECCCC-CCCcc----hhhhhcCcCCEEECCCCcC-c-----ccChhhcCCCCCCEEECCCC-CCCC
Confidence 2 1346899999999999 67554 22344 6999999999864 3 45556668999999999995 6888
Q ss_pred cCCCCccCCCCcceEeecccc
Q 001999 917 ICNSLLLPWPSLETIKIKACN 937 (984)
Q Consensus 917 i~~~~~~~l~sL~~L~i~~C~ 937 (984)
++...+..+++|+.|+++++|
T Consensus 488 l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 488 VPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp CCTTSTTTCTTCCCEECCSCC
T ss_pred CCHHHHhcCCCCCEEEecCCC
Confidence 888447889999999999987
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.84 E-value=4e-20 Score=209.64 Aligned_cols=303 Identities=17% Similarity=0.198 Sum_probs=214.4
Q ss_pred hhccCeEeeeccCCCCCCCC--CCCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCC-cchhcccccCeE
Q 001999 496 EWKDTKKLSLFGFPSSTLPD--MPNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLP-PSISRLINLNAL 572 (984)
Q Consensus 496 ~~~~~r~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~~L~~L 572 (984)
...+++++.+.++.+..+|. +..+++|++|++++|.+..++...|..+++|++|+|++|.++.+| ..++.+++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 45789999999999888876 467899999999999999988767999999999999999999885 568999999999
Q ss_pred ecCCCcccccCchh-hhccCCCcEEEecCccccccch-hhhccCCCCeeecccccccCccccCCCCCCcccchhhhhccc
Q 001999 573 FLRSCSLLFQLPKE-IRYLQKLEILDVRHTRIQCLPS-EIGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSNIISKLC 650 (984)
Q Consensus 573 ~L~~c~~l~~lp~~-i~~L~~L~~L~l~~~~l~~lp~-~~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~~L~ 650 (984)
++++| .++.+|.. ++++++|++|++++|.+..++. .++.+++|++|+++ ++.... ++ ++.++
T Consensus 123 ~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~-----~n~l~~-------~~---~~~l~ 186 (390)
T 3o6n_A 123 VLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS-----SNRLTH-------VD---LSLIP 186 (390)
T ss_dssp ECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECC-----SSCCSB-------CC---GGGCT
T ss_pred ECCCC-ccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECC-----CCcCCc-------cc---ccccc
Confidence 99996 47788877 5899999999999999997765 58999999999998 554322 33 67789
Q ss_pred cccceeeeecCCchhHHhhhhhhhHHHhhccCCCceEEEecCCcchhhhhhhcccccCCCCCCCCCCcceeEEEecccCc
Q 001999 651 LLEELIIEVLDPSDRRWKQNVESIAGEIAALEQLTTLHFYFPTIKCFKTFINRRKSVNGNKSRHGDNFKSFNIVVGYPQS 730 (984)
Q Consensus 651 ~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~ 730 (984)
+|+.|++...... .+....+|+.|+++.+....++.
T Consensus 187 ~L~~L~l~~n~l~-------------~~~~~~~L~~L~l~~n~l~~~~~------------------------------- 222 (390)
T 3o6n_A 187 SLFHANVSYNLLS-------------TLAIPIAVEELDASHNSINVVRG------------------------------- 222 (390)
T ss_dssp TCSEEECCSSCCS-------------EEECCSSCSEEECCSSCCCEEEC-------------------------------
T ss_pred ccceeeccccccc-------------ccCCCCcceEEECCCCeeeeccc-------------------------------
Confidence 9999998863322 23445689999988664433210
Q ss_pred cceeccccccccccccceEEccCCCCchhHHHHHhhhccceeeccccccccccccccccccccCeeEEcccCCceEEecC
Q 001999 731 TSLLAGFDVSEWSAEKHLRFSAGVEEIPGEFLTILKQAYSFELIGSQYAVNLSNFGVDNLVRLQACVIEDCNEMTSIIDG 810 (984)
Q Consensus 731 ~~~l~~~~~p~~~~L~~L~l~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~l~~i~~~ 810 (984)
+....|+.|.+. ++. +...+ .+.++++|+.|+++++. ++.+...
T Consensus 223 ---------~~~~~L~~L~l~-~n~-----------------------l~~~~--~l~~l~~L~~L~Ls~n~-l~~~~~~ 266 (390)
T 3o6n_A 223 ---------PVNVELTILKLQ-HNN-----------------------LTDTA--WLLNYPGLVEVDLSYNE-LEKIMYH 266 (390)
T ss_dssp ---------CCCSSCCEEECC-SSC-----------------------CCCCG--GGGGCTTCSEEECCSSC-CCEEESG
T ss_pred ---------cccccccEEECC-CCC-----------------------CcccH--HHcCCCCccEEECCCCc-CCCcChh
Confidence 001125555555 211 01111 24557888888888753 4444322
Q ss_pred CCCCcccCCCcceeecccccccccccccccccCcccccceeeecccccccccCcHHHHhhcccccEEeecccchhHHHhh
Q 001999 811 NHRGVVPFQGLNNLHIKNLPKLMHIWVGPIASGSLNSLRTLRVKICHSIKTLFSKEMVAQLNELQDLQVEDCQMIEEIVE 890 (984)
Q Consensus 811 ~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~ 890 (984)
....+++|+.|+++++ .+..+ +.....+++|+.|++++| .++.+ + ..+..+++|++|++++|...
T Consensus 267 ---~~~~l~~L~~L~L~~n-~l~~~---~~~~~~l~~L~~L~L~~n-~l~~~-~-~~~~~l~~L~~L~L~~N~i~----- 331 (390)
T 3o6n_A 267 ---PFVKMQRLERLYISNN-RLVAL---NLYGQPIPTLKVLDLSHN-HLLHV-E-RNQPQFDRLENLYLDHNSIV----- 331 (390)
T ss_dssp ---GGTTCSSCCEEECCSS-CCCEE---ECSSSCCTTCCEEECCSS-CCCCC-G-GGHHHHTTCSEEECCSSCCC-----
T ss_pred ---HccccccCCEEECCCC-cCccc---CcccCCCCCCCEEECCCC-cceec-C-ccccccCcCCEEECCCCccc-----
Confidence 1223577888887775 33333 222246778888888887 67666 2 34667788888888777641
Q ss_pred cCcccccCCCCcccEeeccCCc
Q 001999 891 AGTVLAIGEFPKLKTLELIDLP 912 (984)
Q Consensus 891 ~~~~~~~~~~~~L~~L~L~~c~ 912 (984)
.. .+..+++|+.|++++++
T Consensus 332 -~~--~~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 332 -TL--KLSTHHTLKNLTLSHND 350 (390)
T ss_dssp -CC--CCCTTCCCSEEECCSSC
T ss_pred -ee--CchhhccCCEEEcCCCC
Confidence 11 25567777777777754
No 40
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.83 E-value=2e-20 Score=215.62 Aligned_cols=147 Identities=23% Similarity=0.231 Sum_probs=122.2
Q ss_pred CCCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCCcchhcccccCeEecCCCcccccCchhhhccCCCcE
Q 001999 516 MPNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLPPSISRLINLNALFLRSCSLLFQLPKEIRYLQKLEI 595 (984)
Q Consensus 516 ~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~ 595 (984)
+..+++|++|++++|.+..+| . +..+++|++|++++|.++.+| ++.+++|++|++++|. ++.+| ++++++|++
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~~~-~-l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~-l~~~~--~~~l~~L~~ 110 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITDMT-G-IEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNK-LTNLD--VTPLTKLTY 110 (457)
T ss_dssp HHHHTTCCEEECCSSCCCCCT-T-GGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSC-CSCCC--CTTCTTCCE
T ss_pred hhHcCCCCEEEccCCCcccCh-h-hcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCC-Cceee--cCCCCcCCE
Confidence 456889999999999999987 3 899999999999999999986 8999999999999975 77775 899999999
Q ss_pred EEecCccccccchhhhccCCCCeeecccccccCccccCCCCCCcccchhhhhccccccceeeeecCCchhHHhhhhhhhH
Q 001999 596 LDVRHTRIQCLPSEIGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSNIISKLCLLEELIIEVLDPSDRRWKQNVESIA 675 (984)
Q Consensus 596 L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~ 675 (984)
|++++|++..+| ++.+++|++|+++ ++... .++ ++++++|++|++...... ...
T Consensus 111 L~L~~N~l~~l~--~~~l~~L~~L~l~-----~N~l~-------~l~---l~~l~~L~~L~l~~n~~~--------~~~- 164 (457)
T 3bz5_A 111 LNCDTNKLTKLD--VSQNPLLTYLNCA-----RNTLT-------EID---VSHNTQLTELDCHLNKKI--------TKL- 164 (457)
T ss_dssp EECCSSCCSCCC--CTTCTTCCEEECT-----TSCCS-------CCC---CTTCTTCCEEECTTCSCC--------CCC-
T ss_pred EECCCCcCCeec--CCCCCcCCEEECC-----CCccc-------eec---cccCCcCCEEECCCCCcc--------ccc-
Confidence 999999999986 8999999999998 55432 243 788999999999864322 112
Q ss_pred HHhhccCCCceEEEecCCcch
Q 001999 676 GEIAALEQLTTLHFYFPTIKC 696 (984)
Q Consensus 676 ~~l~~l~~L~~L~l~~~~~~~ 696 (984)
.+..+++|+.|+++.+....
T Consensus 165 -~~~~l~~L~~L~ls~n~l~~ 184 (457)
T 3bz5_A 165 -DVTPQTQLTTLDCSFNKITE 184 (457)
T ss_dssp -CCTTCTTCCEEECCSSCCCC
T ss_pred -ccccCCcCCEEECCCCccce
Confidence 47788999999998765443
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.83 E-value=6.9e-20 Score=219.44 Aligned_cols=303 Identities=17% Similarity=0.200 Sum_probs=223.7
Q ss_pred hhccCeEeeeccCCCCCCCC--CCCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCCc-chhcccccCeE
Q 001999 496 EWKDTKKLSLFGFPSSTLPD--MPNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLPP-SISRLINLNAL 572 (984)
Q Consensus 496 ~~~~~r~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~L~~L 572 (984)
...+++.+.+.++.+..+|. +..+++|++|++++|.+..+++..|..+++|++|+|++|.++.+|+ .++.+++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 45688999999998888776 4678999999999999999887669999999999999999998855 57999999999
Q ss_pred ecCCCcccccCchh-hhccCCCcEEEecCccccccch-hhhccCCCCeeecccccccCccccCCCCCCcccchhhhhccc
Q 001999 573 FLRSCSLLFQLPKE-IRYLQKLEILDVRHTRIQCLPS-EIGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSNIISKLC 650 (984)
Q Consensus 573 ~L~~c~~l~~lp~~-i~~L~~L~~L~l~~~~l~~lp~-~~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~~L~ 650 (984)
+|++| .++.+|.. ++++++|++|++++|.+..+|. .++.+++|++|+++ ++... .++ ++.++
T Consensus 129 ~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~-----~N~l~-------~~~---~~~l~ 192 (597)
T 3oja_B 129 VLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS-----SNRLT-------HVD---LSLIP 192 (597)
T ss_dssp ECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECT-----TSCCS-------BCC---GGGCT
T ss_pred EeeCC-CCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECc-----CCCCC-------CcC---hhhhh
Confidence 99997 47788876 5899999999999999997765 58999999999998 55432 243 67788
Q ss_pred cccceeeeecCCchhHHhhhhhhhHHHhhccCCCceEEEecCCcchhhhhhhcccccCCCCCCCCCCcceeEEEecccCc
Q 001999 651 LLEELIIEVLDPSDRRWKQNVESIAGEIAALEQLTTLHFYFPTIKCFKTFINRRKSVNGNKSRHGDNFKSFNIVVGYPQS 730 (984)
Q Consensus 651 ~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~ 730 (984)
+|+.|++.+.... .+....+|+.|+++.+....++..
T Consensus 193 ~L~~L~l~~n~l~-------------~l~~~~~L~~L~ls~n~l~~~~~~------------------------------ 229 (597)
T 3oja_B 193 SLFHANVSYNLLS-------------TLAIPIAVEELDASHNSINVVRGP------------------------------ 229 (597)
T ss_dssp TCSEEECCSSCCS-------------EEECCTTCSEEECCSSCCCEEECS------------------------------
T ss_pred hhhhhhcccCccc-------------cccCCchhheeeccCCcccccccc------------------------------
Confidence 9999988863322 234566899999886654332110
Q ss_pred cceeccccccccccccceEEccCCCCchhHHHHHhhhccceeeccccccccccccccccccccCeeEEcccCCceEEecC
Q 001999 731 TSLLAGFDVSEWSAEKHLRFSAGVEEIPGEFLTILKQAYSFELIGSQYAVNLSNFGVDNLVRLQACVIEDCNEMTSIIDG 810 (984)
Q Consensus 731 ~~~l~~~~~p~~~~L~~L~l~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~l~~i~~~ 810 (984)
..+.|+.|.+. ++.- ...+ .+.++++|+.|+++++. +..+...
T Consensus 230 ----------~~~~L~~L~L~-~n~l-----------------------~~~~--~l~~l~~L~~L~Ls~N~-l~~~~~~ 272 (597)
T 3oja_B 230 ----------VNVELTILKLQ-HNNL-----------------------TDTA--WLLNYPGLVEVDLSYNE-LEKIMYH 272 (597)
T ss_dssp ----------CCSCCCEEECC-SSCC-----------------------CCCG--GGGGCTTCSEEECCSSC-CCEEESG
T ss_pred ----------cCCCCCEEECC-CCCC-----------------------CCCh--hhccCCCCCEEECCCCc-cCCCCHH
Confidence 00125566665 2210 1111 34568889999998854 4444322
Q ss_pred CCCCcccCCCcceeecccccccccccccccccCcccccceeeecccccccccCcHHHHhhcccccEEeecccchhHHHhh
Q 001999 811 NHRGVVPFQGLNNLHIKNLPKLMHIWVGPIASGSLNSLRTLRVKICHSIKTLFSKEMVAQLNELQDLQVEDCQMIEEIVE 890 (984)
Q Consensus 811 ~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~ 890 (984)
....+++|+.|+|+++ .+..+ +.....+|+|+.|++++| .+..+ | ..+..+++|+.|++++|...
T Consensus 273 ---~~~~l~~L~~L~Ls~N-~l~~l---~~~~~~l~~L~~L~Ls~N-~l~~i-~-~~~~~l~~L~~L~L~~N~l~----- 337 (597)
T 3oja_B 273 ---PFVKMQRLERLYISNN-RLVAL---NLYGQPIPTLKVLDLSHN-HLLHV-E-RNQPQFDRLENLYLDHNSIV----- 337 (597)
T ss_dssp ---GGTTCSSCCEEECTTS-CCCEE---ECSSSCCTTCCEEECCSS-CCCCC-G-GGHHHHTTCSEEECCSSCCC-----
T ss_pred ---HhcCccCCCEEECCCC-CCCCC---CcccccCCCCcEEECCCC-CCCcc-C-cccccCCCCCEEECCCCCCC-----
Confidence 2234688999999885 34443 223356889999999999 77776 3 45688999999999988752
Q ss_pred cCcccccCCCCcccEeeccCCc
Q 001999 891 AGTVLAIGEFPKLKTLELIDLP 912 (984)
Q Consensus 891 ~~~~~~~~~~~~L~~L~L~~c~ 912 (984)
.. .+..+++|+.|+|++++
T Consensus 338 -~~--~~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 338 -TL--KLSTHHTLKNLTLSHND 356 (597)
T ss_dssp -CC--CCCTTCCCSEEECCSSC
T ss_pred -Cc--ChhhcCCCCEEEeeCCC
Confidence 12 36688899999998866
No 42
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.82 E-value=1.1e-18 Score=211.45 Aligned_cols=416 Identities=18% Similarity=0.129 Sum_probs=243.1
Q ss_pred CCCCCCCCCCCc-CceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCCc-chhcccccCeEecCCCcccccCch
Q 001999 508 FPSSTLPDMPNC-CEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLPP-SISRLINLNALFLRSCSLLFQLPK 585 (984)
Q Consensus 508 ~~~~~l~~~~~~-~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~ 585 (984)
..+..+|. .+ ++++.|++++|.++.+++..|.++++|++|+|++|.|+.+|+ .|++|++|++|+|++|. ++.+|.
T Consensus 41 ~~l~~vP~--~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~~ 117 (635)
T 4g8a_A 41 LNFYKIPD--NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLAL 117 (635)
T ss_dssp SCCSSCCS--SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECG
T ss_pred CCcCccCC--CCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc-CCCCCH
Confidence 34555553 22 479999999999999998779999999999999999999855 68999999999999975 777775
Q ss_pred -hhhccCCCcEEEecCccccccchh-hhccCCCCeeecccccccCccccCCCCCCcccchhhhhccccccceeeeecCCc
Q 001999 586 -EIRYLQKLEILDVRHTRIQCLPSE-IGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSNIISKLCLLEELIIEVLDPS 663 (984)
Q Consensus 586 -~i~~L~~L~~L~l~~~~l~~lp~~-~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~~L~~L~~L~l~~~~~~ 663 (984)
.+++|++|++|++++|+++.+|.. ++++++|++|+++ ++.... ..+| ..++.+++|++|++.+....
T Consensus 118 ~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls-----~N~l~~-----~~~~-~~~~~l~~L~~L~L~~N~l~ 186 (635)
T 4g8a_A 118 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA-----HNLIQS-----FKLP-EYFSNLTNLEHLDLSSNKIQ 186 (635)
T ss_dssp GGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECC-----SSCCCC-----CCCC-GGGGGCTTCCEEECCSSCCC
T ss_pred HHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccc-----cCcccc-----CCCc-hhhccchhhhhhcccCcccc
Confidence 589999999999999999998865 8999999999998 554322 1234 44889999999999865443
Q ss_pred hhHHhhhhhhhHHHhhccCC------------------------CceEEEecCCcc--hhhhhhhcccccC---------
Q 001999 664 DRRWKQNVESIAGEIAALEQ------------------------LTTLHFYFPTIK--CFKTFINRRKSVN--------- 708 (984)
Q Consensus 664 ~~~~~~~~~~~~~~l~~l~~------------------------L~~L~l~~~~~~--~~~~~~~~~~~~~--------- 708 (984)
.. .......+..++. +..+.+..+... ............+
T Consensus 187 ~~-----~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~ 261 (635)
T 4g8a_A 187 SI-----YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF 261 (635)
T ss_dssp EE-----CGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECC
T ss_pred cc-----ccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccc
Confidence 21 1112222222221 122222222110 0000000000000
Q ss_pred ---CCC----CC--CCCCcceeEEEecccCccc-----------------------eeccccccccccccceEEccCC--
Q 001999 709 ---GNK----SR--HGDNFKSFNIVVGYPQSTS-----------------------LLAGFDVSEWSAEKHLRFSAGV-- 754 (984)
Q Consensus 709 ---~~~----~~--~~~~~l~~~~~~g~~~~~~-----------------------~l~~~~~p~~~~L~~L~l~~~~-- 754 (984)
... .. .....+............. +.....++.+..++.|.+. ++
T Consensus 262 ~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~-~~~~ 340 (635)
T 4g8a_A 262 RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELV-NCKF 340 (635)
T ss_dssp TTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEE-SCEE
T ss_pred ccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcc-cccc
Confidence 000 00 0000011111000000000 0000011112234444444 11
Q ss_pred CCchhHHHHHhhhccceeeccccccccccccccccccccCeeEEcccCCceEEecCC----------------------C
Q 001999 755 EEIPGEFLTILKQAYSFELIGSQYAVNLSNFGVDNLVRLQACVIEDCNEMTSIIDGN----------------------H 812 (984)
Q Consensus 755 ~~l~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~l~~i~~~~----------------------~ 812 (984)
..++. ..++.++.+.+.++..... .....+++|+.|+++.... ....... .
T Consensus 341 ~~~~~---~~l~~L~~l~l~~n~~~~~---~~~~~l~~L~~L~ls~n~l-~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~ 413 (635)
T 4g8a_A 341 GQFPT---LKLKSLKRLTFTSNKGGNA---FSEVDLPSLEFLDLSRNGL-SFKGCCSQSDFGTISLKYLDLSFNGVITMS 413 (635)
T ss_dssp SSCCC---CBCTTCCEEEEESCCSCCB---CCCCBCTTCCEEECCSSCC-BEEEECCHHHHSCSCCCEEECCSCSEEEEC
T ss_pred cCcCc---ccchhhhhcccccccCCCC---cccccccccccchhhcccc-ccccccccchhhhhhhhhhhcccccccccc
Confidence 11111 0122233333222211110 1122456666666654321 1111100 0
Q ss_pred CCcccCCCcceeecccccccccccccccccCcccccceeeecccccccccCcHHHHhhcccccEEeecccchhHHHhhcC
Q 001999 813 RGVVPFQGLNNLHIKNLPKLMHIWVGPIASGSLNSLRTLRVKICHSIKTLFSKEMVAQLNELQDLQVEDCQMIEEIVEAG 892 (984)
Q Consensus 813 ~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~ 892 (984)
.....+++|+.+.+.++........ .....+++|+.++++.+ .+... ....+..+++|+.|++++|.....+
T Consensus 414 ~~~~~l~~L~~l~l~~~~~~~~~~~--~~~~~l~~l~~l~ls~n-~l~~~-~~~~~~~~~~L~~L~Ls~N~~~~~~---- 485 (635)
T 4g8a_A 414 SNFLGLEQLEHLDFQHSNLKQMSEF--SVFLSLRNLIYLDISHT-HTRVA-FNGIFNGLSSLEVLKMAGNSFQENF---- 485 (635)
T ss_dssp SCCTTCTTCCEEECTTSEEESTTSS--CTTTTCTTCCEEECTTS-CCEEC-CTTTTTTCTTCCEEECTTCEEGGGE----
T ss_pred ccccccccccchhhhhccccccccc--ccccccccccccccccc-ccccc-cccccccchhhhhhhhhhccccccc----
Confidence 1122345566666655443322211 12246778888888887 66666 3456788999999999998765432
Q ss_pred cccccCCCCcccEeeccCCccccccCCCCccCCCCcceEeecccccccccCc-CCcCCcCcceeechHH
Q 001999 893 TVLAIGEFPKLKTLELIDLPKLSTICNSLLLPWPSLETIKIKACNALKSFPS-TFKNTTMLKVIKGDQA 960 (984)
Q Consensus 893 ~~~~~~~~~~L~~L~L~~c~~L~~i~~~~~~~l~sL~~L~i~~C~~L~~lp~-~~~~l~~L~~l~~~~~ 960 (984)
.+..+..+++|++|+|++| +++.++...+..+++|++|++++|. ++.+|. .+..+++|+.|+...+
T Consensus 486 ~~~~~~~l~~L~~L~Ls~N-~L~~l~~~~f~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~Ls~N 552 (635)
T 4g8a_A 486 LPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLN 552 (635)
T ss_dssp ECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSC-CCBCCCGGGTTCTTCCEEECTTS
T ss_pred CchhhhhccccCEEECCCC-ccCCcChHHHcCCCCCCEEECCCCc-CCCCChhHHhCCCCCCEEECCCC
Confidence 3446788999999999996 5888866578899999999999986 888754 5788999999998755
No 43
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.80 E-value=3.1e-19 Score=196.56 Aligned_cols=241 Identities=21% Similarity=0.321 Sum_probs=171.1
Q ss_pred CCCccEEeccCCCCccCCcchhcccccCeEecCCCcccccCchhhhccCCCcEEEecCccccccchhhhccCCCCeeecc
Q 001999 543 MCHLQLLDLHDTSIRCLPPSISRLINLNALFLRSCSLLFQLPKEIRYLQKLEILDVRHTRIQCLPSEIGQLIKLKCLRVS 622 (984)
Q Consensus 543 l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~ 622 (984)
...+++|+|++|.++.+|..++.+++|++|+|++|. +..+|..++++++|++|++++|.+..+|..++++++|++|+++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSC-CCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCC-ccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence 467889999999888888888889999999998865 5688888999999999999999888899889999999999988
Q ss_pred cccccCccccCCCCCCcccchhhhhccccccceeeeecCCchhHHhhhhhhhHHHhhccCCCceEEEecCCcchhhhhhh
Q 001999 623 WVENVGNHTHAGAWPGEMISSNIISKLCLLEELIIEVLDPSDRRWKQNVESIAGEIAALEQLTTLHFYFPTIKCFKTFIN 702 (984)
Q Consensus 623 ~~~~~~~~~l~~~~~~~~ip~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 702 (984)
+|.... .+|.. +.. ..+ ...+
T Consensus 159 -----~n~~~~------~~p~~-~~~------~~~-----------------~~~~------------------------ 179 (328)
T 4fcg_A 159 -----ACPELT------ELPEP-LAS------TDA-----------------SGEH------------------------ 179 (328)
T ss_dssp -----EETTCC------CCCSC-SEE------EC------------------CCCE------------------------
T ss_pred -----CCCCcc------ccChh-Hhh------ccc-----------------hhhh------------------------
Confidence 444333 33321 100 000 0011
Q ss_pred cccccCCCCCCCCCCcceeEEEecccCccceeccccccccccccceEEccCCCCchhHHHHHhhhccceeeccccccccc
Q 001999 703 RRKSVNGNKSRHGDNFKSFNIVVGYPQSTSLLAGFDVSEWSAEKHLRFSAGVEEIPGEFLTILKQAYSFELIGSQYAVNL 782 (984)
Q Consensus 703 ~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~l~~~~~p~~~~L~~L~l~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~l 782 (984)
T Consensus 180 -------------------------------------------------------------------------------- 179 (328)
T 4fcg_A 180 -------------------------------------------------------------------------------- 179 (328)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccccCeeEEcccCCceEEecCCCCCcccCCCcceeecccccccccccccccccCcccccceeeeccccccccc
Q 001999 783 SNFGVDNLVRLQACVIEDCNEMTSIIDGNHRGVVPFQGLNNLHIKNLPKLMHIWVGPIASGSLNSLRTLRVKICHSIKTL 862 (984)
Q Consensus 783 ~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~c~~L~~l 862 (984)
.++++|+.|+++++ .++.++ ...+.+++|+.|++++| .++.+
T Consensus 180 -----~~l~~L~~L~L~~n-~l~~lp-------------------------------~~l~~l~~L~~L~L~~N-~l~~l 221 (328)
T 4fcg_A 180 -----QGLVNLQSLRLEWT-GIRSLP-------------------------------ASIANLQNLKSLKIRNS-PLSAL 221 (328)
T ss_dssp -----EESTTCCEEEEEEE-CCCCCC-------------------------------GGGGGCTTCCEEEEESS-CCCCC
T ss_pred -----ccCCCCCEEECcCC-CcCcch-------------------------------HhhcCCCCCCEEEccCC-CCCcC
Confidence 22445555555543 121111 00124566666666666 56555
Q ss_pred CcHHHHhhcccccEEeecccchhHHHhhcCcccccCCCCcccEeeccCCccccccCCCCccCCCCcceEeeccccccccc
Q 001999 863 FSKEMVAQLNELQDLQVEDCQMIEEIVEAGTVLAIGEFPKLKTLELIDLPKLSTICNSLLLPWPSLETIKIKACNALKSF 942 (984)
Q Consensus 863 ~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~L~~L~L~~c~~L~~i~~~~~~~l~sL~~L~i~~C~~L~~l 942 (984)
+ ..+..+++|++|++++|.... ..+..+..+++|++|+|++|+.+..++. .+..+++|+.|++++|+.++.+
T Consensus 222 -~-~~l~~l~~L~~L~Ls~n~~~~-----~~p~~~~~l~~L~~L~L~~n~~~~~~p~-~~~~l~~L~~L~L~~n~~~~~i 293 (328)
T 4fcg_A 222 -G-PAIHHLPKLEELDLRGCTALR-----NYPPIFGGRAPLKRLILKDCSNLLTLPL-DIHRLTQLEKLDLRGCVNLSRL 293 (328)
T ss_dssp -C-GGGGGCTTCCEEECTTCTTCC-----BCCCCTTCCCCCCEEECTTCTTCCBCCT-TGGGCTTCCEEECTTCTTCCCC
T ss_pred -c-hhhccCCCCCEEECcCCcchh-----hhHHHhcCCCCCCEEECCCCCchhhcch-hhhcCCCCCEEeCCCCCchhhc
Confidence 2 246677788888888776642 3445677889999999999988888887 6888999999999999999999
Q ss_pred CcCCcCCcCcceeechHHhhhhccccC
Q 001999 943 PSTFKNTTMLKVIKGDQAWFDQLEWEN 969 (984)
Q Consensus 943 p~~~~~l~~L~~l~~~~~~w~~l~~~~ 969 (984)
|..+.++++|+.+....++...+.+..
T Consensus 294 P~~l~~L~~L~~l~l~~~~~~~l~~~~ 320 (328)
T 4fcg_A 294 PSLIAQLPANCIILVPPHLQAQLDQHR 320 (328)
T ss_dssp CGGGGGSCTTCEEECCGGGSCC-----
T ss_pred cHHHhhccCceEEeCCHHHHHHHhhhh
Confidence 999999999999999888777766543
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.80 E-value=1.4e-18 Score=192.04 Aligned_cols=122 Identities=23% Similarity=0.288 Sum_probs=76.3
Q ss_pred ceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCCc-chhcccccCeEecCCCcccccCchhhhccCCCcEEEec
Q 001999 521 EILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLPP-SISRLINLNALFLRSCSLLFQLPKEIRYLQKLEILDVR 599 (984)
Q Consensus 521 ~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~ 599 (984)
+++.++++++.+..+|..+ .+.|++|+|++|.++.++. .++++++|++|++++|......|..++++++|++|+++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCccccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 5666777766666666542 2567777777777776644 56777777777777754322336667777777777777
Q ss_pred CccccccchhhhccCCCCeeecccccccCccccCCCCCCcccchhhhhccccccceeeee
Q 001999 600 HTRIQCLPSEIGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSNIISKLCLLEELIIEV 659 (984)
Q Consensus 600 ~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~~L~~L~~L~l~~ 659 (984)
+|.++.+|..+. ++|++|+++ ++... .++...+.++++|+.|++..
T Consensus 109 ~n~l~~l~~~~~--~~L~~L~l~-----~n~l~-------~~~~~~~~~l~~L~~L~l~~ 154 (330)
T 1xku_A 109 KNQLKELPEKMP--KTLQELRVH-----ENEIT-------KVRKSVFNGLNQMIVVELGT 154 (330)
T ss_dssp SSCCSBCCSSCC--TTCCEEECC-----SSCCC-------BBCHHHHTTCTTCCEEECCS
T ss_pred CCcCCccChhhc--ccccEEECC-----CCccc-------ccCHhHhcCCccccEEECCC
Confidence 777777766554 577777776 43322 24444455556666655554
No 45
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.79 E-value=2.1e-18 Score=198.42 Aligned_cols=113 Identities=20% Similarity=0.272 Sum_probs=57.5
Q ss_pred ccCeEeeeccCCCCCCCCCCCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCCcchhcccccCeEecCCC
Q 001999 498 KDTKKLSLFGFPSSTLPDMPNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLPPSISRLINLNALFLRSC 577 (984)
Q Consensus 498 ~~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c 577 (984)
++++.+.+.+|.+..+|.. .++|+.|++++|.+..++.. .++|++|++++|.++.+| .++.+.+|++|++++|
T Consensus 91 ~~L~~L~l~~n~l~~lp~~--~~~L~~L~l~~n~l~~l~~~----~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N 163 (454)
T 1jl5_A 91 PHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKALSDL----PPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNN 163 (454)
T ss_dssp TTCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCSC----CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSS
T ss_pred CCCCEEEccCCcCCccccc--cCCCcEEECCCCccCcccCC----CCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCC
Confidence 3455555555555554432 24555555555555544331 145555555555555555 3555555555555554
Q ss_pred cccccCchhhhccCCCcEEEecCccccccchhhhccCCCCeeecc
Q 001999 578 SLLFQLPKEIRYLQKLEILDVRHTRIQCLPSEIGQLIKLKCLRVS 622 (984)
Q Consensus 578 ~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~ 622 (984)
. ++.+|..+ .+|++|++++|.+..+| .++.+++|++|+++
T Consensus 164 ~-l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~ 203 (454)
T 1jl5_A 164 S-LKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYAD 203 (454)
T ss_dssp C-CSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECC
T ss_pred c-CcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECC
Confidence 2 44444322 35555555555555554 35555555555555
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.79 E-value=7.9e-19 Score=194.24 Aligned_cols=122 Identities=20% Similarity=0.243 Sum_probs=80.6
Q ss_pred ceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccC-CcchhcccccCeEecCCCcccccCchhhhccCCCcEEEec
Q 001999 521 EILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCL-PPSISRLINLNALFLRSCSLLFQLPKEIRYLQKLEILDVR 599 (984)
Q Consensus 521 ~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~ 599 (984)
+++.++++++.+..+|..+ .++|++|++++|.++.+ |..++++++|++|++++|......|..++++++|++|+++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCccccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 5677777777777777653 35677777777777766 3467777777777777765333336667777777777777
Q ss_pred CccccccchhhhccCCCCeeecccccccCccccCCCCCCcccchhhhhccccccceeeee
Q 001999 600 HTRIQCLPSEIGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSNIISKLCLLEELIIEV 659 (984)
Q Consensus 600 ~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~~L~~L~~L~l~~ 659 (984)
+|.+..+|..+. ++|++|+++ ++... .+|...++++++|+.|++.+
T Consensus 111 ~n~l~~l~~~~~--~~L~~L~l~-----~n~i~-------~~~~~~~~~l~~L~~L~l~~ 156 (332)
T 2ft3_A 111 KNHLVEIPPNLP--SSLVELRIH-----DNRIR-------KVPKGVFSGLRNMNCIEMGG 156 (332)
T ss_dssp SSCCCSCCSSCC--TTCCEEECC-----SSCCC-------CCCSGGGSSCSSCCEEECCS
T ss_pred CCcCCccCcccc--ccCCEEECC-----CCccC-------ccCHhHhCCCccCCEEECCC
Confidence 777777776654 677777776 44332 24444456666666666654
No 47
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.76 E-value=1.3e-17 Score=191.97 Aligned_cols=330 Identities=15% Similarity=0.162 Sum_probs=207.4
Q ss_pred ccCeEeeeccCCCCCCCCCCCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCCcchhcccccCeEecCCC
Q 001999 498 KDTKKLSLFGFPSSTLPDMPNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLPPSISRLINLNALFLRSC 577 (984)
Q Consensus 498 ~~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c 577 (984)
.+++++.+.++.+..+|.. .++|+.|++++|.+..+|.. +.+|++|++++|.++.+|... .+|++|++++|
T Consensus 71 ~~l~~L~l~~~~l~~lp~~--~~~L~~L~l~~n~l~~lp~~----~~~L~~L~l~~n~l~~l~~~~---~~L~~L~L~~n 141 (454)
T 1jl5_A 71 RQAHELELNNLGLSSLPEL--PPHLESLVASCNSLTELPEL----PQSLKSLLVDNNNLKALSDLP---PLLEYLGVSNN 141 (454)
T ss_dssp HTCSEEECTTSCCSCCCSC--CTTCSEEECCSSCCSSCCCC----CTTCCEEECCSSCCSCCCSCC---TTCCEEECCSS
T ss_pred cCCCEEEecCCccccCCCC--cCCCCEEEccCCcCCccccc----cCCCcEEECCCCccCcccCCC---CCCCEEECcCC
Confidence 4578899999998888764 37899999999999988864 478999999999998876532 68999999997
Q ss_pred cccccCchhhhccCCCcEEEecCccccccchhhhccCCCCeeecccccccCccccCCCCCCcccchhhhhccccccceee
Q 001999 578 SLLFQLPKEIRYLQKLEILDVRHTRIQCLPSEIGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSNIISKLCLLEELII 657 (984)
Q Consensus 578 ~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~~L~~L~~L~l 657 (984)
. ++.+| .++++++|++|++++|+++.+|..+ .+|++|+++ ++.. . .+| . ++++++|+.|++
T Consensus 142 ~-l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~-----~n~l-~------~l~-~-~~~l~~L~~L~l 202 (454)
T 1jl5_A 142 Q-LEKLP-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAG-----NNQL-E------ELP-E-LQNLPFLTAIYA 202 (454)
T ss_dssp C-CSSCC-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECC-----SSCC-S------SCC-C-CTTCTTCCEEEC
T ss_pred C-CCCCc-ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECc-----CCcC-C------cCc-c-ccCCCCCCEEEC
Confidence 4 67788 5999999999999999999888644 589999998 5533 3 355 3 789999999999
Q ss_pred eecCCchhHHhhhhhhhHHHhhccCCCceEEEecCCcchhhhhhhcccccCCCCCCCCCCcceeEEEecccCccceeccc
Q 001999 658 EVLDPSDRRWKQNVESIAGEIAALEQLTTLHFYFPTIKCFKTFINRRKSVNGNKSRHGDNFKSFNIVVGYPQSTSLLAGF 737 (984)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~l~~~ 737 (984)
.+..... ++ ....+|+.|+++.+....++.
T Consensus 203 ~~N~l~~---------l~---~~~~~L~~L~l~~n~l~~lp~-------------------------------------- 232 (454)
T 1jl5_A 203 DNNSLKK---------LP---DLPLSLESIVAGNNILEELPE-------------------------------------- 232 (454)
T ss_dssp CSSCCSS---------CC---CCCTTCCEEECCSSCCSSCCC--------------------------------------
T ss_pred CCCcCCc---------CC---CCcCcccEEECcCCcCCcccc--------------------------------------
Confidence 8644321 10 112588999988665443321
Q ss_pred cccccccccceEEc-cCCCCchhHHHHHhhhccceeeccccccccccccccccccccCeeEEcccCCceEEecCCCCCcc
Q 001999 738 DVSEWSAEKHLRFS-AGVEEIPGEFLTILKQAYSFELIGSQYAVNLSNFGVDNLVRLQACVIEDCNEMTSIIDGNHRGVV 816 (984)
Q Consensus 738 ~~p~~~~L~~L~l~-~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~ 816 (984)
+..++.|+.|.++ +.+.+++.. +++|+.|++.++. +..++.. +++|+.|+++++ .++.++.
T Consensus 233 -~~~l~~L~~L~l~~N~l~~l~~~----~~~L~~L~l~~N~-l~~l~~~----~~~L~~L~ls~N-~l~~l~~------- 294 (454)
T 1jl5_A 233 -LQNLPFLTTIYADNNLLKTLPDL----PPSLEALNVRDNY-LTDLPEL----PQSLTFLDVSEN-IFSGLSE------- 294 (454)
T ss_dssp -CTTCTTCCEEECCSSCCSSCCSC----CTTCCEEECCSSC-CSCCCCC----CTTCCEEECCSS-CCSEESC-------
T ss_pred -cCCCCCCCEEECCCCcCCccccc----ccccCEEECCCCc-ccccCcc----cCcCCEEECcCC-ccCcccC-------
Confidence 1122235566665 233344332 3566677765553 3334432 478888888875 3454431
Q ss_pred cCCCcceeecccccccccccccccccCcccccceeeecccccccccCcHHHHhhcccccEEeecccchhHHHhhcCcccc
Q 001999 817 PFQGLNNLHIKNLPKLMHIWVGPIASGSLNSLRTLRVKICHSIKTLFSKEMVAQLNELQDLQVEDCQMIEEIVEAGTVLA 896 (984)
Q Consensus 817 ~~~~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~ 896 (984)
.+++|+.|+++++. +..+. ...++|+.|++++| +++.++. .+++|++|++++|.. + .++.
T Consensus 295 ~~~~L~~L~l~~N~-l~~i~------~~~~~L~~L~Ls~N-~l~~lp~-----~~~~L~~L~L~~N~l-~-----~lp~- 354 (454)
T 1jl5_A 295 LPPNLYYLNASSNE-IRSLC------DLPPSLEELNVSNN-KLIELPA-----LPPRLERLIASFNHL-A-----EVPE- 354 (454)
T ss_dssp CCTTCCEEECCSSC-CSEEC------CCCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSSCC-S-----CCCC-
T ss_pred cCCcCCEEECcCCc-CCccc------CCcCcCCEEECCCC-ccccccc-----cCCcCCEEECCCCcc-c-----cccc-
Confidence 12688888888753 33321 11258888888887 6776621 268888888888754 2 2222
Q ss_pred cCCCCcccEeeccCCccccc---cCCCCccCC-------------CCcceEeeccccccc---ccCcCCcC
Q 001999 897 IGEFPKLKTLELIDLPKLST---ICNSLLLPW-------------PSLETIKIKACNALK---SFPSTFKN 948 (984)
Q Consensus 897 ~~~~~~L~~L~L~~c~~L~~---i~~~~~~~l-------------~sL~~L~i~~C~~L~---~lp~~~~~ 948 (984)
.+++|++|++++++ ++. +|. .+..+ ++|+.|++++++ ++ .+|..+..
T Consensus 355 --~l~~L~~L~L~~N~-l~~l~~ip~-~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~-l~~~~~iP~sl~~ 420 (454)
T 1jl5_A 355 --LPQNLKQLHVEYNP-LREFPDIPE-SVEDLRMNSHLAEVPELPQNLKQLHVETNP-LREFPDIPESVED 420 (454)
T ss_dssp --CCTTCCEEECCSSC-CSSCCCCCT-TCCEEECCC-----------------------------------
T ss_pred --hhhhccEEECCCCC-CCcCCCChH-HHHhhhhcccccccccccCcCCEEECCCCc-CCccccchhhHhh
Confidence 46788888888854 444 343 34444 789999999977 44 55654443
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.75 E-value=7.5e-18 Score=186.32 Aligned_cols=121 Identities=18% Similarity=0.294 Sum_probs=106.8
Q ss_pred ccCeEeeeccCCCCCCCCCCCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccC-CcchhcccccCeEecCC
Q 001999 498 KDTKKLSLFGFPSSTLPDMPNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCL-PPSISRLINLNALFLRS 576 (984)
Q Consensus 498 ~~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~ 576 (984)
..++.+.+.++.+..+|... .++|+.|++++|.+..++...|.++++|++|++++|.++.+ |..++.+++|++|++++
T Consensus 33 c~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp EETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred ccCCEEECCCCCccccCCCC-CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 36788999988888887532 47999999999999998776699999999999999999987 77899999999999999
Q ss_pred CcccccCchhhhccCCCcEEEecCccccccchh-hhccCCCCeeecc
Q 001999 577 CSLLFQLPKEIRYLQKLEILDVRHTRIQCLPSE-IGQLIKLKCLRVS 622 (984)
Q Consensus 577 c~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~-~~~L~~L~~L~l~ 622 (984)
| .++.+|..+. ++|++|++++|.+..+|.. +..+++|++|+++
T Consensus 112 n-~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~ 155 (332)
T 2ft3_A 112 N-HLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMG 155 (332)
T ss_dssp S-CCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECC
T ss_pred C-cCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECC
Confidence 6 4778888766 8999999999999988865 8899999999998
No 49
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.75 E-value=3e-17 Score=181.40 Aligned_cols=121 Identities=17% Similarity=0.254 Sum_probs=106.4
Q ss_pred ccCeEeeeccCCCCCCCCCCCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccC-CcchhcccccCeEecCC
Q 001999 498 KDTKKLSLFGFPSSTLPDMPNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCL-PPSISRLINLNALFLRS 576 (984)
Q Consensus 498 ~~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~ 576 (984)
..++.+.+.++.+..+|.. -.++|+.|++++|.+..++...|.++++|++|+|++|.++.+ |..++.+++|++|++++
T Consensus 31 c~l~~l~~~~~~l~~lp~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKD-LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp EETTEEECTTSCCCSCCCS-CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCCeEEEecCCCccccCcc-CCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 4678888888888887753 237899999999999999887799999999999999999987 78899999999999999
Q ss_pred CcccccCchhhhccCCCcEEEecCccccccchh-hhccCCCCeeecc
Q 001999 577 CSLLFQLPKEIRYLQKLEILDVRHTRIQCLPSE-IGQLIKLKCLRVS 622 (984)
Q Consensus 577 c~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~-~~~L~~L~~L~l~ 622 (984)
|. ++.+|..+. ++|++|++++|.+..++.. +..+++|++|+++
T Consensus 110 n~-l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 153 (330)
T 1xku_A 110 NQ-LKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELG 153 (330)
T ss_dssp SC-CSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECC
T ss_pred Cc-CCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECC
Confidence 64 778887765 7999999999999988764 8899999999998
No 50
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.75 E-value=7.3e-20 Score=212.68 Aligned_cols=392 Identities=18% Similarity=0.160 Sum_probs=232.2
Q ss_pred CceeEEEecCcccCCCc-chHhhcCCCccEEeccCCCCc-----cCCcchhcccccCeEecCCCcccccCchhh-hccC-
Q 001999 520 CEILTLIVEGRRLEKLP-MSFFEYMCHLQLLDLHDTSIR-----CLPPSISRLINLNALFLRSCSLLFQLPKEI-RYLQ- 591 (984)
Q Consensus 520 ~~L~~L~l~~~~l~~l~-~~~~~~l~~Lr~L~L~~~~i~-----~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i-~~L~- 591 (984)
++|++|+++++.+...+ ..++..+++|++|+|++|.++ .++..+..+++|++|++++|..-...+..+ ..+.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 57888888888776544 233678888889999888877 456677788888999988865222223333 3355
Q ss_pred ---CCcEEEecCcccc-----ccchhhhccCCCCeeecccccccCccccCCCCCCcccchhhhhccccccceeeeecCCc
Q 001999 592 ---KLEILDVRHTRIQ-----CLPSEIGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSNIISKLCLLEELIIEVLDPS 663 (984)
Q Consensus 592 ---~L~~L~l~~~~l~-----~lp~~~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~~L~~L~~L~l~~~~~~ 663 (984)
+|++|++++|++. .+|..+..+++|++|+++ ++..... ....+.......+++|++|++.++...
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls-----~n~i~~~--~~~~l~~~l~~~~~~L~~L~L~~n~l~ 155 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS-----DNLLGDA--GLQLLCEGLLDPQCRLEKLQLEYCSLS 155 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECC-----SSBCHHH--HHHHHHHHHTSTTCCCCEEECTTSCCB
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECC-----CCcCchH--HHHHHHHHHhcCCCcceEEECCCCCCC
Confidence 6889999888877 457778888889998888 4432110 000011111222457888888876554
Q ss_pred hhHHhhhhhhhHHHhhccCCCceEEEecCCcchhhhhhhcccccCCCCCCCCCCcceeEEEecccCccceecccccc-cc
Q 001999 664 DRRWKQNVESIAGEIAALEQLTTLHFYFPTIKCFKTFINRRKSVNGNKSRHGDNFKSFNIVVGYPQSTSLLAGFDVS-EW 742 (984)
Q Consensus 664 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~l~~~~~p-~~ 742 (984)
.. ........+..+++|+.|+++.+............. ++ ..
T Consensus 156 ~~----~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~---------------------------------l~~~~ 198 (461)
T 1z7x_W 156 AA----SCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQG---------------------------------LKDSP 198 (461)
T ss_dssp GG----GHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHH---------------------------------HHHSC
T ss_pred HH----HHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHH---------------------------------HhcCC
Confidence 32 123456667778889999888766433211000000 00 01
Q ss_pred ccccceEEccCCC--Cch----hHHHHHhhhccceeecccccccc----ccccccccccccCeeEEcccCCceEEecC-C
Q 001999 743 SAEKHLRFSAGVE--EIP----GEFLTILKQAYSFELIGSQYAVN----LSNFGVDNLVRLQACVIEDCNEMTSIIDG-N 811 (984)
Q Consensus 743 ~~L~~L~l~~~~~--~l~----~~~~~~l~~L~~L~l~~~~~~~~----l~~~~~~~l~~L~~L~l~~~~~l~~i~~~-~ 811 (984)
+.|+.|.++ +|. ... ...+..+++|+.|++.++..... +...-...+++|+.|++++| .++..... .
T Consensus 199 ~~L~~L~L~-~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l 276 (461)
T 1z7x_W 199 CQLEALKLE-SCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDL 276 (461)
T ss_dssp CCCCEEECT-TSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHH
T ss_pred CCceEEEcc-CCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCC-CCCHHHHHHH
Confidence 136677777 432 211 12345678888898877632211 11111224789999999987 44331100 0
Q ss_pred CCCcccCCCcceeecccccccccccccccc---cCcccccceeeecccccccccC---cHHHHhhcccccEEeecccchh
Q 001999 812 HRGVVPFQGLNNLHIKNLPKLMHIWVGPIA---SGSLNSLRTLRVKICHSIKTLF---SKEMVAQLNELQDLQVEDCQMI 885 (984)
Q Consensus 812 ~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~---~~~l~~L~~L~l~~c~~L~~l~---~~~~l~~l~~L~~L~l~~c~~l 885 (984)
......+++|++|+++++. +......... ....++|+.|++++| .++... -+..+..+++|++|++++|..
T Consensus 277 ~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i- 353 (461)
T 1z7x_W 277 CRVLRAKESLKELSLAGNE-LGDEGARLLCETLLEPGCQLESLWVKSC-SFTAACCSHFSSVLAQNRFLLELQISNNRL- 353 (461)
T ss_dssp HHHHHHCTTCCEEECTTCC-CHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHCSSCCEEECCSSBC-
T ss_pred HHHHhhCCCcceEECCCCC-CchHHHHHHHHHhccCCccceeeEcCCC-CCchHHHHHHHHHHhhCCCccEEEccCCcc-
Confidence 0112236899999999874 3221000000 023479999999999 676651 134567789999999999864
Q ss_pred HHHhhcCcccccC-CCCcccEeeccCCcccc-----ccCCCCccCCCCcceEeeccccccccc-----CcCC-cCCcCcc
Q 001999 886 EEIVEAGTVLAIG-EFPKLKTLELIDLPKLS-----TICNSLLLPWPSLETIKIKACNALKSF-----PSTF-KNTTMLK 953 (984)
Q Consensus 886 ~~i~~~~~~~~~~-~~~~L~~L~L~~c~~L~-----~i~~~~~~~l~sL~~L~i~~C~~L~~l-----p~~~-~~l~~L~ 953 (984)
.......+...+. ..++|++|+|++|. ++ .++. .+..+++|++|++++|+ ++.. ...+ ....+|+
T Consensus 354 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~-~l~~~~~L~~L~l~~N~-i~~~~~~~l~~~l~~~~~~L~ 430 (461)
T 1z7x_W 354 EDAGVRELCQGLGQPGSVLRVLWLADCD-VSDSSCSSLAA-TLLANHSLRELDLSNNC-LGDAGILQLVESVRQPGCLLE 430 (461)
T ss_dssp HHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHH-HHHHCCCCCEEECCSSS-CCHHHHHHHHHHHTSTTCCCC
T ss_pred ccccHHHHHHHHcCCCCceEEEECCCCC-CChhhHHHHHH-HHHhCCCccEEECCCCC-CCHHHHHHHHHHhccCCcchh
Confidence 3322111212222 26899999999974 66 4454 45668999999999987 4432 1111 1233566
Q ss_pred eeechHHhhh
Q 001999 954 VIKGDQAWFD 963 (984)
Q Consensus 954 ~l~~~~~~w~ 963 (984)
.+.....+|+
T Consensus 431 ~L~~~~~~~~ 440 (461)
T 1z7x_W 431 QLVLYDIYWS 440 (461)
T ss_dssp EEECTTCCCC
T ss_pred heeecccccC
Confidence 6665544443
No 51
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.74 E-value=3.2e-18 Score=187.29 Aligned_cols=127 Identities=22% Similarity=0.383 Sum_probs=92.6
Q ss_pred CceeEEEecCcccCC---CcchHhhcCCCccEEeccC-CCCc-cCCcchhcccccCeEecCCCcccccCchhhhccCCCc
Q 001999 520 CEILTLIVEGRRLEK---LPMSFFEYMCHLQLLDLHD-TSIR-CLPPSISRLINLNALFLRSCSLLFQLPKEIRYLQKLE 594 (984)
Q Consensus 520 ~~L~~L~l~~~~l~~---l~~~~~~~l~~Lr~L~L~~-~~i~-~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~ 594 (984)
.+++.|+++++.+.. +|.. +.++++|++|++++ |.+. .+|..++++++|++|++++|.....+|..++++++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~-l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSS-LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGG-GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChh-HhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 468888888887773 6655 78888888888885 6666 5688888888888888888664447888888888888
Q ss_pred EEEecCcccc-ccchhhhccCCCCeeecccccccCccccCCCCCCcccchhhhhccc-cccceeeee
Q 001999 595 ILDVRHTRIQ-CLPSEIGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSNIISKLC-LLEELIIEV 659 (984)
Q Consensus 595 ~L~l~~~~l~-~lp~~~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~~L~-~L~~L~l~~ 659 (984)
+|++++|.+. .+|..++.+++|++|+++ ++.... .+|.. +.+++ +|+.|++.+
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~-----~N~l~~------~~p~~-l~~l~~~L~~L~L~~ 183 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFD-----GNRISG------AIPDS-YGSFSKLFTSMTISR 183 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECC-----SSCCEE------ECCGG-GGCCCTTCCEEECCS
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECc-----CCcccC------cCCHH-HhhhhhcCcEEECcC
Confidence 8888888887 677888888888888887 554332 24433 55554 555555543
No 52
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.74 E-value=3.6e-18 Score=188.02 Aligned_cols=171 Identities=26% Similarity=0.377 Sum_probs=137.4
Q ss_pred ccCeEeeeccCCCCCCCC-CCCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCCcchhcccccCeEecCC
Q 001999 498 KDTKKLSLFGFPSSTLPD-MPNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLPPSISRLINLNALFLRS 576 (984)
Q Consensus 498 ~~~r~l~l~~~~~~~l~~-~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~ 576 (984)
..++.|.+.++.+..+|. +..+++|++|++++|.+..+|.. +.++++|++|+|++|.++.+|..++.+++|++|++++
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~ 159 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDT-MQQFAGLETLTLARNPLRALPASIASLNRLRELSIRA 159 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSC-GGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEE
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHH-HhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCC
Confidence 468889999998888775 46688999999999999888877 7889999999999999998998999999999999999
Q ss_pred CcccccCchhhhc---------cCCCcEEEecCccccccchhhhccCCCCeeecccccccCccccCCCCCCcccchhhhh
Q 001999 577 CSLLFQLPKEIRY---------LQKLEILDVRHTRIQCLPSEIGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSNIIS 647 (984)
Q Consensus 577 c~~l~~lp~~i~~---------L~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~ 647 (984)
|..+..+|..++. +++|++|++++|++..+|..++++++|++|+++ +|... .+|.. ++
T Consensus 160 n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~-----~N~l~-------~l~~~-l~ 226 (328)
T 4fcg_A 160 CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIR-----NSPLS-------ALGPA-IH 226 (328)
T ss_dssp ETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEE-----SSCCC-------CCCGG-GG
T ss_pred CCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEcc-----CCCCC-------cCchh-hc
Confidence 8888888887765 899999999999999999889999999999998 55433 35544 77
Q ss_pred ccccccceeeeecCCchhHHhhhhhhhHHHhhccCCCceEEEe
Q 001999 648 KLCLLEELIIEVLDPSDRRWKQNVESIAGEIAALEQLTTLHFY 690 (984)
Q Consensus 648 ~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 690 (984)
++++|++|++.++... ...+..+..+++|+.|+++
T Consensus 227 ~l~~L~~L~Ls~n~~~--------~~~p~~~~~l~~L~~L~L~ 261 (328)
T 4fcg_A 227 HLPKLEELDLRGCTAL--------RNYPPIFGGRAPLKRLILK 261 (328)
T ss_dssp GCTTCCEEECTTCTTC--------CBCCCCTTCCCCCCEEECT
T ss_pred cCCCCCEEECcCCcch--------hhhHHHhcCCCCCCEEECC
Confidence 8888888888753322 2233455666667666665
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.74 E-value=4.1e-18 Score=190.17 Aligned_cols=169 Identities=22% Similarity=0.214 Sum_probs=124.4
Q ss_pred eeeccCCCCCCCCCCCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccC-CcchhcccccCeEecCCCcccc
Q 001999 503 LSLFGFPSSTLPDMPNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCL-PPSISRLINLNALFLRSCSLLF 581 (984)
Q Consensus 503 l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~c~~l~ 581 (984)
...+++.+..+|.. -.++|++|++++|.+..++...|.++++|++|++++|.++.+ |..++.+++|++|++++|. ++
T Consensus 36 c~~~~~~l~~iP~~-~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~ 113 (353)
T 2z80_A 36 CKGSSGSLNSIPSG-LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY-LS 113 (353)
T ss_dssp EECCSTTCSSCCTT-CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CS
T ss_pred eeCCCCCccccccc-ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc-CC
Confidence 45556677777652 235888999998888888876688888999999999888876 4568888899999998864 66
Q ss_pred cCchh-hhccCCCcEEEecCccccccch--hhhccCCCCeeecccccccCccccCCCCCCcccchhhhhccccccceeee
Q 001999 582 QLPKE-IRYLQKLEILDVRHTRIQCLPS--EIGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSNIISKLCLLEELIIE 658 (984)
Q Consensus 582 ~lp~~-i~~L~~L~~L~l~~~~l~~lp~--~~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~~L~~L~~L~l~ 658 (984)
.+|.. ++++++|++|++++|++..+|. .+..+++|++|+++ ++.... .++...++++++|++|++.
T Consensus 114 ~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~-----~n~~~~------~~~~~~~~~l~~L~~L~l~ 182 (353)
T 2z80_A 114 NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVG-----NMDTFT------KIQRKDFAGLTFLEELEID 182 (353)
T ss_dssp SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEE-----ESSSCC------EECTTTTTTCCEEEEEEEE
T ss_pred cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECC-----CCcccc------ccCHHHccCCCCCCEEECC
Confidence 77765 7888899999999988888886 57888899999888 443333 3544557788888888887
Q ss_pred ecCCchhHHhhhhhhhHHHhhccCCCceEEEecC
Q 001999 659 VLDPSDRRWKQNVESIAGEIAALEQLTTLHFYFP 692 (984)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 692 (984)
+.... ...+..+..+++|+.|+++.+
T Consensus 183 ~n~l~--------~~~~~~l~~l~~L~~L~l~~n 208 (353)
T 2z80_A 183 ASDLQ--------SYEPKSLKSIQNVSHLILHMK 208 (353)
T ss_dssp ETTCC--------EECTTTTTTCSEEEEEEEECS
T ss_pred CCCcC--------ccCHHHHhccccCCeecCCCC
Confidence 64332 122345666777777777644
No 54
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.73 E-value=6.8e-19 Score=211.46 Aligned_cols=189 Identities=10% Similarity=0.019 Sum_probs=100.9
Q ss_pred ccccceEEccCCCCc-hhHHHHHhhhccceeecc----------ccccccccccc-cccccccCeeEEcccCCceEEecC
Q 001999 743 SAEKHLRFSAGVEEI-PGEFLTILKQAYSFELIG----------SQYAVNLSNFG-VDNLVRLQACVIEDCNEMTSIIDG 810 (984)
Q Consensus 743 ~~L~~L~l~~~~~~l-~~~~~~~l~~L~~L~l~~----------~~~~~~l~~~~-~~~l~~L~~L~l~~~~~l~~i~~~ 810 (984)
++|+.|.+.+....- .......+++|+.|.+.+ ++.++...... ..++++|++|++ .|+.++.....
T Consensus 318 ~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l-~~~~l~~~~~~ 396 (592)
T 3ogk_B 318 PNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDITNESLE 396 (592)
T ss_dssp TTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE-EESCCCHHHHH
T ss_pred cCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEe-ecCCccHHHHH
Confidence 346667666111110 011234556777777763 33333211111 234677777777 34444321100
Q ss_pred CCCCcccCCCcceeeccc---cccccccccc---ccccCcccccceeeeccccc-ccccCcHHHHhhcccccEEeecccc
Q 001999 811 NHRGVVPFQGLNNLHIKN---LPKLMHIWVG---PIASGSLNSLRTLRVKICHS-IKTLFSKEMVAQLNELQDLQVEDCQ 883 (984)
Q Consensus 811 ~~~~~~~~~~L~~L~l~~---~~~l~~i~~~---~~~~~~l~~L~~L~l~~c~~-L~~l~~~~~l~~l~~L~~L~l~~c~ 883 (984)
. ....+++|+.|.+.+ |+.++..+.. +.....+++|+.|++++|.+ +.+.........+++|++|++++|.
T Consensus 397 ~--l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~ 474 (592)
T 3ogk_B 397 S--IGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG 474 (592)
T ss_dssp H--HHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC
T ss_pred H--HHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC
Confidence 0 001257888888874 3444432100 00123578888888887753 4443122223448888888888876
Q ss_pred hhHHHhhcCcccccCCCCcccEeeccCCcccccc--CCCCccCCCCcceEeecccccccc
Q 001999 884 MIEEIVEAGTVLAIGEFPKLKTLELIDLPKLSTI--CNSLLLPWPSLETIKIKACNALKS 941 (984)
Q Consensus 884 ~l~~i~~~~~~~~~~~~~~L~~L~L~~c~~L~~i--~~~~~~~l~sL~~L~i~~C~~L~~ 941 (984)
.-. .++......+++|++|+|++|+ ++.- +. ....+++|+.|++++|+ ++.
T Consensus 475 l~~----~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~-~~~~l~~L~~L~ls~n~-it~ 527 (592)
T 3ogk_B 475 ESD----EGLMEFSRGCPNLQKLEMRGCC-FSERAIAA-AVTKLPSLRYLWVQGYR-ASM 527 (592)
T ss_dssp SSH----HHHHHHHTCCTTCCEEEEESCC-CBHHHHHH-HHHHCSSCCEEEEESCB-CCT
T ss_pred CCH----HHHHHHHhcCcccCeeeccCCC-CcHHHHHH-HHHhcCccCeeECcCCc-CCH
Confidence 421 1222344577889999999887 5432 22 23467889999999888 543
No 55
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.72 E-value=8.3e-18 Score=183.99 Aligned_cols=128 Identities=23% Similarity=0.306 Sum_probs=101.7
Q ss_pred CCccEEeccCCCCc---cCCcchhcccccCeEecCC-CcccccCchhhhccCCCcEEEecCcccc-ccchhhhccCCCCe
Q 001999 544 CHLQLLDLHDTSIR---CLPPSISRLINLNALFLRS-CSLLFQLPKEIRYLQKLEILDVRHTRIQ-CLPSEIGQLIKLKC 618 (984)
Q Consensus 544 ~~Lr~L~L~~~~i~---~lp~~i~~l~~L~~L~L~~-c~~l~~lp~~i~~L~~L~~L~l~~~~l~-~lp~~~~~L~~L~~ 618 (984)
.+++.|+|+++.+. .+|..++++++|++|++++ |.....+|..++++++|++|++++|.+. .+|..++++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 57999999999998 5899999999999999995 5555589999999999999999999998 88999999999999
Q ss_pred eecccccccCccccCCCCCCcccchhhhhccccccceeeeecCCchhHHhhhhhhhHHHhhccC-CCceEEEec
Q 001999 619 LRVSWVENVGNHTHAGAWPGEMISSNIISKLCLLEELIIEVLDPSDRRWKQNVESIAGEIAALE-QLTTLHFYF 691 (984)
Q Consensus 619 L~l~~~~~~~~~~l~~~~~~~~ip~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~-~L~~L~l~~ 691 (984)
|+++ ++.... .+|. .++++++|++|++.+.... ...+..+..+. +|+.|+++.
T Consensus 130 L~Ls-----~N~l~~------~~p~-~~~~l~~L~~L~L~~N~l~--------~~~p~~l~~l~~~L~~L~L~~ 183 (313)
T 1ogq_A 130 LDFS-----YNALSG------TLPP-SISSLPNLVGITFDGNRIS--------GAIPDSYGSFSKLFTSMTISR 183 (313)
T ss_dssp EECC-----SSEEES------CCCG-GGGGCTTCCEEECCSSCCE--------EECCGGGGCCCTTCCEEECCS
T ss_pred EeCC-----CCccCC------cCCh-HHhcCCCCCeEECcCCccc--------CcCCHHHhhhhhcCcEEECcC
Confidence 9999 665443 3553 3788888888888754322 22344556665 677776653
No 56
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.71 E-value=7.5e-17 Score=191.20 Aligned_cols=256 Identities=21% Similarity=0.143 Sum_probs=174.0
Q ss_pred ccCeEeeeccCCCCCCCCCCCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCCcchhcccccCeEecCCC
Q 001999 498 KDTKKLSLFGFPSSTLPDMPNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLPPSISRLINLNALFLRSC 577 (984)
Q Consensus 498 ~~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c 577 (984)
..++.+.+.++.+..+|.... ++|+.|++++|.+..+|. .+++|++|+|++|.++.+|. .+++|++|++++|
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N 111 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSN 111 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSC
T ss_pred CCCcEEEecCCCcCccChhhC-CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCC
Confidence 357889999998888876332 789999999999998887 47889999999999998887 7789999999986
Q ss_pred cccccCchhhhccCCCcEEEecCccccccchhhhccCCCCeeecccccccCccccCCCCCCcccchhhhhccccccceee
Q 001999 578 SLLFQLPKEIRYLQKLEILDVRHTRIQCLPSEIGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSNIISKLCLLEELII 657 (984)
Q Consensus 578 ~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~~L~~L~~L~l 657 (984)
.++.+|. .+.+|++|++++|+++.+|.. +++|++|+++ +|.. . .+|. .+++|+.|++
T Consensus 112 -~l~~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls-----~N~l-~------~l~~----~~~~L~~L~L 168 (622)
T 3g06_A 112 -PLTHLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVS-----DNQL-A------SLPA----LPSELCKLWA 168 (622)
T ss_dssp -CCCCCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECC-----SSCC-S------CCCC----CCTTCCEEEC
T ss_pred -cCCCCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECc-----CCcC-C------CcCC----ccCCCCEEEC
Confidence 4777776 678899999999999988864 4889999998 5432 2 2332 2345666666
Q ss_pred eecCCchhHHhhhhhhhHHHhhccCCCceEEEecCCcchhhhhhhcccccCCCCCCCCCCcceeEEEecccCccceeccc
Q 001999 658 EVLDPSDRRWKQNVESIAGEIAALEQLTTLHFYFPTIKCFKTFINRRKSVNGNKSRHGDNFKSFNIVVGYPQSTSLLAGF 737 (984)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~l~~~ 737 (984)
.+..... ++ ..+++|+.|+++.+..
T Consensus 169 ~~N~l~~---------l~---~~~~~L~~L~Ls~N~l------------------------------------------- 193 (622)
T 3g06_A 169 YNNQLTS---------LP---MLPSGLQELSVSDNQL------------------------------------------- 193 (622)
T ss_dssp CSSCCSC---------CC---CCCTTCCEEECCSSCC-------------------------------------------
T ss_pred CCCCCCC---------Cc---ccCCCCcEEECCCCCC-------------------------------------------
Confidence 5422210 11 2234444444442211
Q ss_pred cccccccccceEEccCCCCchhHHHHHhhhccceeeccccccccccccccccccccCeeEEcccCCceEEecCCCCCccc
Q 001999 738 DVSEWSAEKHLRFSAGVEEIPGEFLTILKQAYSFELIGSQYAVNLSNFGVDNLVRLQACVIEDCNEMTSIIDGNHRGVVP 817 (984)
Q Consensus 738 ~~p~~~~L~~L~l~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~ 817 (984)
.+ ++. .+++|+.|+++++ .++.++. .
T Consensus 194 -----------------~~-------------------------l~~----~~~~L~~L~L~~N-~l~~l~~-------~ 219 (622)
T 3g06_A 194 -----------------AS-------------------------LPT----LPSELYKLWAYNN-RLTSLPA-------L 219 (622)
T ss_dssp -----------------SC-------------------------CCC----CCTTCCEEECCSS-CCSSCCC-------C
T ss_pred -----------------CC-------------------------CCC----ccchhhEEECcCC-cccccCC-------C
Confidence 11 111 1456777777664 3443332 1
Q ss_pred CCCcceeecccccccccccccccccCcccccceeeecccccccccCcHHHHhhcccccEEeecccchhHHHhhcCccccc
Q 001999 818 FQGLNNLHIKNLPKLMHIWVGPIASGSLNSLRTLRVKICHSIKTLFSKEMVAQLNELQDLQVEDCQMIEEIVEAGTVLAI 897 (984)
Q Consensus 818 ~~~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~ 897 (984)
+++|+.|+++++ .++.++ ..+++|+.|++++| +++.++. .+++|+.|++++|.. + .++..+
T Consensus 220 ~~~L~~L~Ls~N-~L~~lp------~~l~~L~~L~Ls~N-~L~~lp~-----~~~~L~~L~Ls~N~L-~-----~lp~~l 280 (622)
T 3g06_A 220 PSGLKELIVSGN-RLTSLP------VLPSELKELMVSGN-RLTSLPM-----LPSGLLSLSVYRNQL-T-----RLPESL 280 (622)
T ss_dssp CTTCCEEECCSS-CCSCCC------CCCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSSCC-C-----SCCGGG
T ss_pred CCCCCEEEccCC-ccCcCC------CCCCcCcEEECCCC-CCCcCCc-----ccccCcEEeCCCCCC-C-----cCCHHH
Confidence 377888888775 444432 35688888888888 7877722 678888888888754 2 345567
Q ss_pred CCCCcccEeeccCCc
Q 001999 898 GEFPKLKTLELIDLP 912 (984)
Q Consensus 898 ~~~~~L~~L~L~~c~ 912 (984)
..+++|+.|+|++++
T Consensus 281 ~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 281 IHLSSETTVNLEGNP 295 (622)
T ss_dssp GGSCTTCEEECCSCC
T ss_pred hhccccCEEEecCCC
Confidence 778888888888865
No 57
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.70 E-value=6.1e-17 Score=180.66 Aligned_cols=127 Identities=24% Similarity=0.300 Sum_probs=100.2
Q ss_pred CCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCCc-chhcccccCeEecCCCcccccC-chhhhccCCCc
Q 001999 517 PNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLPP-SISRLINLNALFLRSCSLLFQL-PKEIRYLQKLE 594 (984)
Q Consensus 517 ~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~l-p~~i~~L~~L~ 594 (984)
..|+.....+++++.++.+|..+ .++|++|++++|.++.+|. .++.+++|++|++++|. ++.+ |..++++++|+
T Consensus 28 ~~C~~~~~c~~~~~~l~~iP~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~ 103 (353)
T 2z80_A 28 LSCDRNGICKGSSGSLNSIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG-INTIEEDSFSSLGSLE 103 (353)
T ss_dssp CEECTTSEEECCSTTCSSCCTTC---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCC
T ss_pred CCCCCCeEeeCCCCCcccccccc---cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCc-cCccCHhhcCCCCCCC
Confidence 34555556788899999999863 3589999999999998866 78999999999999975 5554 56799999999
Q ss_pred EEEecCccccccchh-hhccCCCCeeecccccccCccccCCCCCCcccch-hhhhccccccceeeee
Q 001999 595 ILDVRHTRIQCLPSE-IGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISS-NIISKLCLLEELIIEV 659 (984)
Q Consensus 595 ~L~l~~~~l~~lp~~-~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~-~~l~~L~~L~~L~l~~ 659 (984)
+|++++|+++.+|.. ++.+++|++|+++ ++... .+|. ..++++++|++|++.+
T Consensus 104 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~-----~n~l~-------~l~~~~~~~~l~~L~~L~l~~ 158 (353)
T 2z80_A 104 HLDLSYNYLSNLSSSWFKPLSSLTFLNLL-----GNPYK-------TLGETSLFSHLTKLQILRVGN 158 (353)
T ss_dssp EEECCSSCCSSCCHHHHTTCTTCSEEECT-----TCCCS-------SSCSSCSCTTCTTCCEEEEEE
T ss_pred EEECCCCcCCcCCHhHhCCCccCCEEECC-----CCCCc-------ccCchhhhccCCCCcEEECCC
Confidence 999999999999887 8899999999998 55332 2454 3456666666666664
No 58
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.70 E-value=2e-16 Score=187.51 Aligned_cols=269 Identities=20% Similarity=0.169 Sum_probs=187.7
Q ss_pred CceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCCcchhcccccCeEecCCCcccccCchhhhccCCCcEEEec
Q 001999 520 CEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLPPSISRLINLNALFLRSCSLLFQLPKEIRYLQKLEILDVR 599 (984)
Q Consensus 520 ~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~ 599 (984)
.++++|+++++.+..+|..++ ++|++|+|++|.++.+|. .+++|++|+|++|. ++.+|. .+++|++|+++
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~---~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP---AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQ-LTSLPV---LPPGLLELSIF 109 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC---TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCC-CSCCCC---CCTTCCEEEEC
T ss_pred CCCcEEEecCCCcCccChhhC---CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCc-CCcCCC---CCCCCCEEECc
Confidence 358889999999998887632 789999999999998887 57889999999865 778887 77899999999
Q ss_pred CccccccchhhhccCCCCeeecccccccCccccCCCCCCcccchhhhhccccccceeeeecCCchhHHhhhhhhhHHHhh
Q 001999 600 HTRIQCLPSEIGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSNIISKLCLLEELIIEVLDPSDRRWKQNVESIAGEIA 679 (984)
Q Consensus 600 ~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~ 679 (984)
+|+++.+|. .+++|+.|+++ +|.. . .+|.. +++|+.|++.++.... ++ .
T Consensus 110 ~N~l~~l~~---~l~~L~~L~L~-----~N~l-~------~lp~~----l~~L~~L~Ls~N~l~~---------l~---~ 158 (622)
T 3g06_A 110 SNPLTHLPA---LPSGLCKLWIF-----GNQL-T------SLPVL----PPGLQELSVSDNQLAS---------LP---A 158 (622)
T ss_dssp SCCCCCCCC---CCTTCCEEECC-----SSCC-S------CCCCC----CTTCCEEECCSSCCSC---------CC---C
T ss_pred CCcCCCCCC---CCCCcCEEECC-----CCCC-C------cCCCC----CCCCCEEECcCCcCCC---------cC---C
Confidence 999988887 67888999988 5432 2 24422 3566666665422110 00 0
Q ss_pred ccCCCceEEEecCCcchhhhhhhcccccCCCCCCCCCCcceeEEEecccCccceeccccccccccccceEEccCCCCchh
Q 001999 680 ALEQLTTLHFYFPTIKCFKTFINRRKSVNGNKSRHGDNFKSFNIVVGYPQSTSLLAGFDVSEWSAEKHLRFSAGVEEIPG 759 (984)
Q Consensus 680 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~l~~~~~p~~~~L~~L~l~~~~~~l~~ 759 (984)
...+|+.|+++.+ .+
T Consensus 159 ~~~~L~~L~L~~N------------------------------------------------------------~l----- 173 (622)
T 3g06_A 159 LPSELCKLWAYNN------------------------------------------------------------QL----- 173 (622)
T ss_dssp CCTTCCEEECCSS------------------------------------------------------------CC-----
T ss_pred ccCCCCEEECCCC------------------------------------------------------------CC-----
Confidence 1223333333211 11
Q ss_pred HHHHHhhhccceeeccccccccccccccccccccCeeEEcccCCceEEecCCCCCcccCCCcceeecccccccccccccc
Q 001999 760 EFLTILKQAYSFELIGSQYAVNLSNFGVDNLVRLQACVIEDCNEMTSIIDGNHRGVVPFQGLNNLHIKNLPKLMHIWVGP 839 (984)
Q Consensus 760 ~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~ 839 (984)
..++ ..+++|+.|+++++ .++.++. .+++|+.|.++++. +..+.
T Consensus 174 --------------------~~l~----~~~~~L~~L~Ls~N-~l~~l~~-------~~~~L~~L~L~~N~-l~~l~--- 217 (622)
T 3g06_A 174 --------------------TSLP----MLPSGLQELSVSDN-QLASLPT-------LPSELYKLWAYNNR-LTSLP--- 217 (622)
T ss_dssp --------------------SCCC----CCCTTCCEEECCSS-CCSCCCC-------CCTTCCEEECCSSC-CSSCC---
T ss_pred --------------------CCCc----ccCCCCcEEECCCC-CCCCCCC-------ccchhhEEECcCCc-ccccC---
Confidence 1111 22678999999874 4554442 24899999998863 44432
Q ss_pred cccCcccccceeeecccccccccCcHHHHhhcccccEEeecccchhHHHhhcCcccccCCCCcccEeeccCCccccccCC
Q 001999 840 IASGSLNSLRTLRVKICHSIKTLFSKEMVAQLNELQDLQVEDCQMIEEIVEAGTVLAIGEFPKLKTLELIDLPKLSTICN 919 (984)
Q Consensus 840 ~~~~~l~~L~~L~l~~c~~L~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~L~~L~L~~c~~L~~i~~ 919 (984)
..+++|+.|++++| +++.+ + ..+++|++|++++|.. + .++. .+++|+.|+|++| +++.+|.
T Consensus 218 ---~~~~~L~~L~Ls~N-~L~~l-p----~~l~~L~~L~Ls~N~L-~-----~lp~---~~~~L~~L~Ls~N-~L~~lp~ 278 (622)
T 3g06_A 218 ---ALPSGLKELIVSGN-RLTSL-P----VLPSELKELMVSGNRL-T-----SLPM---LPSGLLSLSVYRN-QLTRLPE 278 (622)
T ss_dssp ---CCCTTCCEEECCSS-CCSCC-C----CCCTTCCEEECCSSCC-S-----CCCC---CCTTCCEEECCSS-CCCSCCG
T ss_pred ---CCCCCCCEEEccCC-ccCcC-C----CCCCcCcEEECCCCCC-C-----cCCc---ccccCcEEeCCCC-CCCcCCH
Confidence 24689999999999 88887 2 5679999999999854 2 2322 6789999999996 6888887
Q ss_pred CCccCCCCcceEeecccccccccCcCCcCCc
Q 001999 920 SLLLPWPSLETIKIKACNALKSFPSTFKNTT 950 (984)
Q Consensus 920 ~~~~~l~sL~~L~i~~C~~L~~lp~~~~~l~ 950 (984)
.+..+++|+.|++++|+--...|..+..++
T Consensus 279 -~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 279 -SLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp -GGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred -HHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 688899999999999885445555444443
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.69 E-value=9.8e-17 Score=185.38 Aligned_cols=148 Identities=24% Similarity=0.249 Sum_probs=110.8
Q ss_pred CeEeeeccCCCCCCCCCCCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCC-cchhcccccCeEecCCCc
Q 001999 500 TKKLSLFGFPSSTLPDMPNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLP-PSISRLINLNALFLRSCS 578 (984)
Q Consensus 500 ~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~c~ 578 (984)
.+.+...+..+..+|.. -.++|+.|++++|.+..++...|.++++|++|+|++|.++.++ ..+..+.+|++|+|++|.
T Consensus 56 ~~~v~c~~~~l~~iP~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 134 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQG-IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134 (452)
T ss_dssp SCEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CcEEEECCCCcCccCCC-CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence 34566666666666642 2368888889888888887666888888999999988888764 678888889999998864
Q ss_pred ccccCchh-hhccCCCcEEEecCccccccch-hhhccCCCCeeecccccccCccccCCCCCCcccchhhhhcccccccee
Q 001999 579 LLFQLPKE-IRYLQKLEILDVRHTRIQCLPS-EIGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSNIISKLCLLEELI 656 (984)
Q Consensus 579 ~l~~lp~~-i~~L~~L~~L~l~~~~l~~lp~-~~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~~L~~L~~L~ 656 (984)
++.+|.. ++++++|++|++++|.+..+|. .+.++++|+.|+++ +++.+. .++...+.++++|+.|+
T Consensus 135 -l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~-----~~~~l~------~i~~~~~~~l~~L~~L~ 202 (452)
T 3zyi_A 135 -LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLG-----ELKKLE------YISEGAFEGLFNLKYLN 202 (452)
T ss_dssp -CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECC-----CCTTCC------EECTTTTTTCTTCCEEE
T ss_pred -CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCC-----CCCCcc------ccChhhccCCCCCCEEE
Confidence 6666654 7788889999998888887776 47788888888888 555554 56655577777777777
Q ss_pred eeec
Q 001999 657 IEVL 660 (984)
Q Consensus 657 l~~~ 660 (984)
+.+.
T Consensus 203 L~~n 206 (452)
T 3zyi_A 203 LGMC 206 (452)
T ss_dssp CTTS
T ss_pred CCCC
Confidence 7653
No 60
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.69 E-value=1e-16 Score=184.48 Aligned_cols=147 Identities=24% Similarity=0.311 Sum_probs=106.5
Q ss_pred CeEeeeccCCCCCCCCCCCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCC-cchhcccccCeEecCCCc
Q 001999 500 TKKLSLFGFPSSTLPDMPNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLP-PSISRLINLNALFLRSCS 578 (984)
Q Consensus 500 ~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~c~ 578 (984)
.+.+...+..+..+|.. -.++++.|++++|.+..++...|.++++|++|+|++|.++.++ ..+.++.+|++|+|++|
T Consensus 45 ~~~v~c~~~~l~~iP~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n- 122 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDG-ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN- 122 (440)
T ss_dssp SCEEECCSCCCSSCCSC-CCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS-
T ss_pred CCEEEeCCCCcCcCCCC-CCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC-
Confidence 34566666666666642 2367888888888888777666888888888888888888764 56778888888888886
Q ss_pred ccccCch-hhhccCCCcEEEecCccccccch-hhhccCCCCeeecccccccCccccCCCCCCcccchhhhhcccccccee
Q 001999 579 LLFQLPK-EIRYLQKLEILDVRHTRIQCLPS-EIGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSNIISKLCLLEELI 656 (984)
Q Consensus 579 ~l~~lp~-~i~~L~~L~~L~l~~~~l~~lp~-~~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~~L~~L~~L~ 656 (984)
.++.+|. .+..+++|++|++++|.+..+|. .+..+++|++|+++ +++.+. .++...+.++++|+.|+
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~-----~~~~l~------~i~~~~~~~l~~L~~L~ 191 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLG-----ELKRLS------YISEGAFEGLSNLRYLN 191 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECC-----CCTTCC------EECTTTTTTCSSCCEEE
T ss_pred cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCC-----CCCCcc------eeCcchhhcccccCeec
Confidence 4666665 57888888888888888887765 47788888888887 544444 45555566677777776
Q ss_pred eee
Q 001999 657 IEV 659 (984)
Q Consensus 657 l~~ 659 (984)
+.+
T Consensus 192 L~~ 194 (440)
T 3zyj_A 192 LAM 194 (440)
T ss_dssp CTT
T ss_pred CCC
Confidence 664
No 61
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.69 E-value=1.9e-17 Score=198.86 Aligned_cols=369 Identities=15% Similarity=0.060 Sum_probs=228.3
Q ss_pred cCeEeeeccCCCCC---CCC-CCCcCceeEEEecCcccCCCc----chHhhcCCCccEEeccCCCCc-----cCCcchhc
Q 001999 499 DTKKLSLFGFPSST---LPD-MPNCCEILTLIVEGRRLEKLP----MSFFEYMCHLQLLDLHDTSIR-----CLPPSISR 565 (984)
Q Consensus 499 ~~r~l~l~~~~~~~---l~~-~~~~~~L~~L~l~~~~l~~l~----~~~~~~l~~Lr~L~L~~~~i~-----~lp~~i~~ 565 (984)
+++.|.+.++.... ++. ...+++|++|++++|.+.... ..++.++++|++|++++|.++ .++..+.+
T Consensus 139 ~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~ 218 (592)
T 3ogk_B 139 DLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARN 218 (592)
T ss_dssp GCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHH
T ss_pred cCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhh
Confidence 47888887664211 111 136788999999988765442 224667889999999998776 34555678
Q ss_pred ccccCeEecCCCcccccCchhhhccCCCcEEEecCccc----cccchhhhccCCCCeeecccccccCccccCCCCCCccc
Q 001999 566 LINLNALFLRSCSLLFQLPKEIRYLQKLEILDVRHTRI----QCLPSEIGQLIKLKCLRVSWVENVGNHTHAGAWPGEMI 641 (984)
Q Consensus 566 l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~~~l----~~lp~~~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~i 641 (984)
+++|++|++++|. +..+|..++++++|++|+++.+.. ...+..+..+++|+.|.+. .... . .+
T Consensus 219 ~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~-----~~~~-~------~l 285 (592)
T 3ogk_B 219 CRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLS-----YMGP-N------EM 285 (592)
T ss_dssp CTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEET-----TCCT-T------TG
T ss_pred CCCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCcc-----ccch-h------HH
Confidence 8999999999865 566888888999999999985421 2344567788888888887 3211 1 34
Q ss_pred chhhhhccccccceeeeecCCchhHHhhhhhhhHHHhhccCCCceEEEecCCcch--hhhhhhcccccCCCCCCCCCCcc
Q 001999 642 SSNIISKLCLLEELIIEVLDPSDRRWKQNVESIAGEIAALEQLTTLHFYFPTIKC--FKTFINRRKSVNGNKSRHGDNFK 719 (984)
Q Consensus 642 p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l 719 (984)
| ..+..+++|++|++.++... .......+..+++|+.|+++ +.... ++..
T Consensus 286 ~-~~~~~~~~L~~L~Ls~~~l~-------~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~------------------- 337 (592)
T 3ogk_B 286 P-ILFPFAAQIRKLDLLYALLE-------TEDHCTLIQKCPNLEVLETR-NVIGDRGLEVL------------------- 337 (592)
T ss_dssp G-GGGGGGGGCCEEEETTCCCC-------HHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHH-------------------
T ss_pred H-HHHhhcCCCcEEecCCCcCC-------HHHHHHHHHhCcCCCEEecc-CccCHHHHHHH-------------------
Confidence 4 34778888999988875533 22233446788899999887 22111 1100
Q ss_pred eeEEEecccCccceeccccccccccccceEEccC----------CCCchhH----HHHHhhhccceeecccccccccccc
Q 001999 720 SFNIVVGYPQSTSLLAGFDVSEWSAEKHLRFSAG----------VEEIPGE----FLTILKQAYSFELIGSQYAVNLSNF 785 (984)
Q Consensus 720 ~~~~~~g~~~~~~~l~~~~~p~~~~L~~L~l~~~----------~~~l~~~----~~~~l~~L~~L~l~~~~~~~~l~~~ 785 (984)
...++.|+.|.+. + |..+... ....+++|+.|.+ .++.++.....
T Consensus 338 -------------------~~~~~~L~~L~L~-~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l-~~~~l~~~~~~ 396 (592)
T 3ogk_B 338 -------------------AQYCKQLKRLRIE-RGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDITNESLE 396 (592)
T ss_dssp -------------------HHHCTTCCEEEEE-CCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE-EESCCCHHHHH
T ss_pred -------------------HHhCCCCCEEEee-cCccccccccccCccCHHHHHHHHhhCccCeEEEe-ecCCccHHHHH
Confidence 0112236677776 3 5555433 2345677888877 33232221111
Q ss_pred ccc-cccccCeeEEcc---cCCceEEecCC--CCCcccCCCcceeecccccc-cccccccccccCcccccceeeeccccc
Q 001999 786 GVD-NLVRLQACVIED---CNEMTSIIDGN--HRGVVPFQGLNNLHIKNLPK-LMHIWVGPIASGSLNSLRTLRVKICHS 858 (984)
Q Consensus 786 ~~~-~l~~L~~L~l~~---~~~l~~i~~~~--~~~~~~~~~L~~L~l~~~~~-l~~i~~~~~~~~~l~~L~~L~l~~c~~ 858 (984)
.+. ++++|+.|++++ |+.++..+... ......+++|++|.+++|.+ +..-..... ...+++|+.|++++| .
T Consensus 397 ~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~-~~~~~~L~~L~L~~n-~ 474 (592)
T 3ogk_B 397 SIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYI-GQYSPNVRWMLLGYV-G 474 (592)
T ss_dssp HHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHH-HHSCTTCCEEEECSC-C
T ss_pred HHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHH-HHhCccceEeeccCC-C
Confidence 222 378899999985 44554322110 00122368999999987654 221100000 134789999999999 6
Q ss_pred ccccCcHHHHhhcccccEEeecccchhHHHhhcCcccccCCCCcccEeeccCCccccccCCCC-ccCCCCcceEeeccc
Q 001999 859 IKTLFSKEMVAQLNELQDLQVEDCQMIEEIVEAGTVLAIGEFPKLKTLELIDLPKLSTICNSL-LLPWPSLETIKIKAC 936 (984)
Q Consensus 859 L~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~L~~L~L~~c~~L~~i~~~~-~~~l~sL~~L~i~~C 936 (984)
+++......+..+++|++|+|++|.. +. .+.......+++|++|+|++|+ ++...... ...+|.|....+...
T Consensus 475 l~~~~~~~~~~~~~~L~~L~l~~n~l-~~---~~~~~~~~~l~~L~~L~ls~n~-it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 475 ESDEGLMEFSRGCPNLQKLEMRGCCF-SE---RAIAAAVTKLPSLRYLWVQGYR-ASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp SSHHHHHHHHTCCTTCCEEEEESCCC-BH---HHHHHHHHHCSSCCEEEEESCB-CCTTCTTGGGGCCTTEEEEEECCC
T ss_pred CCHHHHHHHHhcCcccCeeeccCCCC-cH---HHHHHHHHhcCccCeeECcCCc-CCHHHHHHHHHhCCCcEEEEecCc
Confidence 76642234567899999999999983 21 1122234578999999999987 66543311 235677766666543
No 62
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.69 E-value=2.9e-18 Score=199.14 Aligned_cols=384 Identities=14% Similarity=0.076 Sum_probs=197.6
Q ss_pred ccCeEeeeccCCCCCCC--C-CCCcCceeEEEecCcccCC-----CcchHhhcCCCccEEeccCCCCccC-Ccchh-ccc
Q 001999 498 KDTKKLSLFGFPSSTLP--D-MPNCCEILTLIVEGRRLEK-----LPMSFFEYMCHLQLLDLHDTSIRCL-PPSIS-RLI 567 (984)
Q Consensus 498 ~~~r~l~l~~~~~~~l~--~-~~~~~~L~~L~l~~~~l~~-----l~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~-~l~ 567 (984)
+.+++|.++++.+...+ . +..+++|++|++++|.+.. ++.. +..+++|++|+|++|.+... +..+. .+.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~-l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSA-LRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHH-HHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHH-HHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 34566666666554322 1 2455667777777666552 2222 55567777777777766542 22232 343
Q ss_pred ----ccCeEecCCCcccc-----cCchhhhccCCCcEEEecCcccccc-chhhh-----ccCCCCeeecccccccCcccc
Q 001999 568 ----NLNALFLRSCSLLF-----QLPKEIRYLQKLEILDVRHTRIQCL-PSEIG-----QLIKLKCLRVSWVENVGNHTH 632 (984)
Q Consensus 568 ----~L~~L~L~~c~~l~-----~lp~~i~~L~~L~~L~l~~~~l~~l-p~~~~-----~L~~L~~L~l~~~~~~~~~~l 632 (984)
+|++|++++|. ++ .+|..+.++++|++|++++|.+... +..+. ..++|++|+++ +|...
T Consensus 82 ~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~-----~n~l~ 155 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLE-----YCSLS 155 (461)
T ss_dssp STTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECT-----TSCCB
T ss_pred hCCCceeEEEccCCC-CCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECC-----CCCCC
Confidence 57777777764 33 3456666777777777777766521 12221 24467777776 33211
Q ss_pred CCCCCCcccchhhhhccccccceeeeecCCchhHHhhhhhhhHHHhh-ccCCCceEEEecCCcchhhhhhhcccccCCCC
Q 001999 633 AGAWPGEMISSNIISKLCLLEELIIEVLDPSDRRWKQNVESIAGEIA-ALEQLTTLHFYFPTIKCFKTFINRRKSVNGNK 711 (984)
Q Consensus 633 ~~~~~~~~ip~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 711 (984)
.. ....++ ..++.+++|++|++.+...... ........+. ..++|+.|+++.+..........
T Consensus 156 ~~--~~~~l~-~~l~~~~~L~~L~L~~n~i~~~----~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l--------- 219 (461)
T 1z7x_W 156 AA--SCEPLA-SVLRAKPDFKELTVSNNDINEA----GVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDL--------- 219 (461)
T ss_dssp GG--GHHHHH-HHHHHCTTCCEEECCSSBCHHH----HHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHH---------
T ss_pred HH--HHHHHH-HHHhhCCCCCEEECcCCCcchH----HHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHH---------
Confidence 10 000112 2255566777777665433211 0111122222 24567777776554332110000
Q ss_pred CCCCCCcceeEEEecccCccceeccccccccccccceEEccCCCCchhHH--------HHHhhhccceeecccccccc--
Q 001999 712 SRHGDNFKSFNIVVGYPQSTSLLAGFDVSEWSAEKHLRFSAGVEEIPGEF--------LTILKQAYSFELIGSQYAVN-- 781 (984)
Q Consensus 712 ~~~~~~~l~~~~~~g~~~~~~~l~~~~~p~~~~L~~L~l~~~~~~l~~~~--------~~~l~~L~~L~l~~~~~~~~-- 781 (984)
.. .+..++.|++|.++ ++ .+.... ...+++|+.|.+.++.....
T Consensus 220 ----------------------~~--~l~~~~~L~~L~Ls-~n-~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~ 273 (461)
T 1z7x_W 220 ----------------------CG--IVASKASLRELALG-SN-KLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGC 273 (461)
T ss_dssp ----------------------HH--HHHHCTTCCEEECC-SS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHH
T ss_pred ----------------------HH--HHHhCCCccEEecc-CC-cCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHH
Confidence 00 00111224555555 32 122110 01234566666655522111
Q ss_pred --ccccccccccccCeeEEcccCCceEEecCC-CC-CcccCCCcceeecccccccccccc--cccccCcccccceeeecc
Q 001999 782 --LSNFGVDNLVRLQACVIEDCNEMTSIIDGN-HR-GVVPFQGLNNLHIKNLPKLMHIWV--GPIASGSLNSLRTLRVKI 855 (984)
Q Consensus 782 --l~~~~~~~l~~L~~L~l~~~~~l~~i~~~~-~~-~~~~~~~L~~L~l~~~~~l~~i~~--~~~~~~~l~~L~~L~l~~ 855 (984)
++. .+..+++|+.|+++++. +....... .. ...+.++|++|++++|. +..... .+.....+++|+.|++++
T Consensus 274 ~~l~~-~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~ 350 (461)
T 1z7x_W 274 GDLCR-VLRAKESLKELSLAGNE-LGDEGARLLCETLLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISN 350 (461)
T ss_dssp HHHHH-HHHHCTTCCEEECTTCC-CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCS
T ss_pred HHHHH-HHhhCCCcceEECCCCC-CchHHHHHHHHHhccCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccC
Confidence 222 24558999999999864 32211000 00 01123699999999986 332110 011123579999999999
Q ss_pred cccccccCcHHHHhh-----cccccEEeecccchhHHHhhcCcccccCCCCcccEeeccCCccccccCCCC-----ccCC
Q 001999 856 CHSIKTLFSKEMVAQ-----LNELQDLQVEDCQMIEEIVEAGTVLAIGEFPKLKTLELIDLPKLSTICNSL-----LLPW 925 (984)
Q Consensus 856 c~~L~~l~~~~~l~~-----l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~L~~L~L~~c~~L~~i~~~~-----~~~l 925 (984)
| .+.+. ....+.. .++|++|++++|..-. .....++..+..+++|++|++++++ ++...... ....
T Consensus 351 n-~i~~~-~~~~l~~~l~~~~~~L~~L~L~~n~i~~-~~~~~l~~~l~~~~~L~~L~l~~N~-i~~~~~~~l~~~l~~~~ 426 (461)
T 1z7x_W 351 N-RLEDA-GVRELCQGLGQPGSVLRVLWLADCDVSD-SSCSSLAATLLANHSLRELDLSNNC-LGDAGILQLVESVRQPG 426 (461)
T ss_dssp S-BCHHH-HHHHHHHHHTSTTCCCCEEECTTSCCCH-HHHHHHHHHHHHCCCCCEEECCSSS-CCHHHHHHHHHHHTSTT
T ss_pred C-ccccc-cHHHHHHHHcCCCCceEEEECCCCCCCh-hhHHHHHHHHHhCCCccEEECCCCC-CCHHHHHHHHHHhccCC
Confidence 9 77765 2233332 6799999999997532 1111233455678999999999975 54432100 1123
Q ss_pred CCcceEeecccc
Q 001999 926 PSLETIKIKACN 937 (984)
Q Consensus 926 ~sL~~L~i~~C~ 937 (984)
++|+.|.+.++.
T Consensus 427 ~~L~~L~~~~~~ 438 (461)
T 1z7x_W 427 CLLEQLVLYDIY 438 (461)
T ss_dssp CCCCEEECTTCC
T ss_pred cchhheeecccc
Confidence 468888887765
No 63
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.68 E-value=2.9e-16 Score=181.40 Aligned_cols=123 Identities=20% Similarity=0.253 Sum_probs=96.4
Q ss_pred eeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccC-CcchhcccccCeEecCCCcccccCchhhhccCCCcEEEecC
Q 001999 522 ILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCL-PPSISRLINLNALFLRSCSLLFQLPKEIRYLQKLEILDVRH 600 (984)
Q Consensus 522 L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~ 600 (984)
.+.++..+..+..+|..+ .++|++|+|++|.++.+ |..++++++|++|+|++|..-...|..+.++++|++|++++
T Consensus 56 ~~~v~c~~~~l~~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCSSCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcCccCCCC---CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 467788888888998763 36899999999999977 66789999999999999753333456789999999999999
Q ss_pred ccccccchh-hhccCCCCeeecccccccCccccCCCCCCcccchhhhhccccccceeeee
Q 001999 601 TRIQCLPSE-IGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSNIISKLCLLEELIIEV 659 (984)
Q Consensus 601 ~~l~~lp~~-~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~~L~~L~~L~l~~ 659 (984)
|++..+|.. +..+++|++|+++ ++... .+|...+.++++|+.|++..
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~-----~N~l~-------~~~~~~~~~l~~L~~L~l~~ 180 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLR-----NNPIE-------SIPSYAFNRVPSLMRLDLGE 180 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECC-----SCCCC-------EECTTTTTTCTTCCEEECCC
T ss_pred CcCCccChhhhcccCCCCEEECC-----CCCcc-------eeCHhHHhcCCcccEEeCCC
Confidence 999988865 7889999999998 55432 35555566777777776653
No 64
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.68 E-value=6e-17 Score=176.90 Aligned_cols=119 Identities=20% Similarity=0.241 Sum_probs=85.5
Q ss_pred EeeeccCCCCCCCCCCCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccC---CcchhcccccCeEecCCCc
Q 001999 502 KLSLFGFPSSTLPDMPNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCL---PPSISRLINLNALFLRSCS 578 (984)
Q Consensus 502 ~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~l---p~~i~~l~~L~~L~L~~c~ 578 (984)
.+...++.+..+|. .-.++|+.|++++|.+..+|..+|.++++|++|+|++|.++.+ |..+..+.+|++|++++|.
T Consensus 11 ~l~c~~~~l~~ip~-~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~ 89 (306)
T 2z66_A 11 EIRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89 (306)
T ss_dssp EEECCSSCCSSCCS-CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS
T ss_pred EEEcCCCCcccCCC-CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc
Confidence 45556666666664 2235778888888888777777677788888888888877654 5566677788888887754
Q ss_pred ccccCchhhhccCCCcEEEecCccccccch--hhhccCCCCeeecc
Q 001999 579 LLFQLPKEIRYLQKLEILDVRHTRIQCLPS--EIGQLIKLKCLRVS 622 (984)
Q Consensus 579 ~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~--~~~~L~~L~~L~l~ 622 (984)
+..+|..+..+++|++|++++|.+..+|. .+..+++|++|+++
T Consensus 90 -i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 134 (306)
T 2z66_A 90 -VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 134 (306)
T ss_dssp -EEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECT
T ss_pred -cccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECC
Confidence 56677777777888888888877776654 57777777777777
No 65
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.66 E-value=1.9e-15 Score=173.99 Aligned_cols=243 Identities=20% Similarity=0.291 Sum_probs=161.2
Q ss_pred eeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCC-cchhcccccCeEecCCCcccccC-chhhhccCCCcEEEec
Q 001999 522 ILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLP-PSISRLINLNALFLRSCSLLFQL-PKEIRYLQKLEILDVR 599 (984)
Q Consensus 522 L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~c~~l~~l-p~~i~~L~~L~~L~l~ 599 (984)
.+.++..+..+..+|..+ .+++++|+|++|.++.++ ..+.++++|++|+|++|. +..+ |..+.++++|++|+++
T Consensus 45 ~~~v~c~~~~l~~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp SCEEECCSCCCSSCCSCC---CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSC-CCEECGGGGTTCSSCCEEECC
T ss_pred CCEEEeCCCCcCcCCCCC---CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCc-CCccChhhccCCccCCEEECC
Confidence 567788888888888763 368899999999998774 678899999999999875 4444 4678889999999999
Q ss_pred Cccccccch-hhhccCCCCeeecccccccCccccCCCCCCcccchhhhhccccccceeeeecCCchhHHhhhhhhhHHHh
Q 001999 600 HTRIQCLPS-EIGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSNIISKLCLLEELIIEVLDPSDRRWKQNVESIAGEI 678 (984)
Q Consensus 600 ~~~l~~lp~-~~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l 678 (984)
+|+++.+|. .+..+++|++|+++ ++... .++...+.++++|+.|++..+.
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~-----~N~i~-------~~~~~~~~~l~~L~~L~l~~~~----------------- 171 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLR-----NNPIE-------SIPSYAFNRIPSLRRLDLGELK----------------- 171 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECC-----SCCCC-------EECTTTTTTCTTCCEEECCCCT-----------------
T ss_pred CCcCCeeCHhHhhccccCceeeCC-----CCccc-------ccCHHHhhhCcccCEeCCCCCC-----------------
Confidence 999888876 47888999999988 54322 2444444455555544443200
Q ss_pred hccCCCceEEEecCCcchhhhhhhcccccCCCCCCCCCCcceeEEEecccCccceeccccccccccccceEEccCCCCch
Q 001999 679 AALEQLTTLHFYFPTIKCFKTFINRRKSVNGNKSRHGDNFKSFNIVVGYPQSTSLLAGFDVSEWSAEKHLRFSAGVEEIP 758 (984)
Q Consensus 679 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~l~~~~~p~~~~L~~L~l~~~~~~l~ 758 (984)
.+.
T Consensus 172 ----~l~------------------------------------------------------------------------- 174 (440)
T 3zyj_A 172 ----RLS------------------------------------------------------------------------- 174 (440)
T ss_dssp ----TCC-------------------------------------------------------------------------
T ss_pred ----Ccc-------------------------------------------------------------------------
Confidence 000
Q ss_pred hHHHHHhhhccceeeccccccccccccccccccccCeeEEcccCCceEEecCCCCCcccCCCcceeeccccccccccccc
Q 001999 759 GEFLTILKQAYSFELIGSQYAVNLSNFGVDNLVRLQACVIEDCNEMTSIIDGNHRGVVPFQGLNNLHIKNLPKLMHIWVG 838 (984)
Q Consensus 759 ~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~ 838 (984)
.++...+.++++|+.|+++++ .++.++. ...+++|+.|+|+++ .+..+..
T Consensus 175 ----------------------~i~~~~~~~l~~L~~L~L~~n-~l~~~~~-----~~~l~~L~~L~Ls~N-~l~~~~~- 224 (440)
T 3zyj_A 175 ----------------------YISEGAFEGLSNLRYLNLAMC-NLREIPN-----LTPLIKLDELDLSGN-HLSAIRP- 224 (440)
T ss_dssp ----------------------EECTTTTTTCSSCCEEECTTS-CCSSCCC-----CTTCSSCCEEECTTS-CCCEECT-
T ss_pred ----------------------eeCcchhhcccccCeecCCCC-cCccccc-----cCCCcccCEEECCCC-ccCccCh-
Confidence 000112445889999999885 4454442 334577888888776 3443322
Q ss_pred ccccCcccccceeeecccccccccCcHHHHhhcccccEEeecccchhHHHhhcCcccccCCCCcccEeeccCCc
Q 001999 839 PIASGSLNSLRTLRVKICHSIKTLFSKEMVAQLNELQDLQVEDCQMIEEIVEAGTVLAIGEFPKLKTLELIDLP 912 (984)
Q Consensus 839 ~~~~~~l~~L~~L~l~~c~~L~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~L~~L~L~~c~ 912 (984)
.....+++|+.|+++++ +++.+ +...+..+++|++|++++|.. +.+ ....+..+++|+.|+|+++|
T Consensus 225 -~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~L~~N~l-~~~----~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 225 -GSFQGLMHLQKLWMIQS-QIQVI-ERNAFDNLQSLVEINLAHNNL-TLL----PHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp -TTTTTCTTCCEEECTTC-CCCEE-CTTSSTTCTTCCEEECTTSCC-CCC----CTTTTSSCTTCCEEECCSSC
T ss_pred -hhhccCccCCEEECCCC-ceeEE-ChhhhcCCCCCCEEECCCCCC-Ccc----ChhHhccccCCCEEEcCCCC
Confidence 22346777888888877 67766 345567777888888877654 211 12234567777777777755
No 66
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.65 E-value=1.1e-16 Score=192.43 Aligned_cols=183 Identities=14% Similarity=0.109 Sum_probs=107.9
Q ss_pred cccccceEEccCCCCchhH----HHHHhhhccceeeccc-----cccccccccc---c-ccccccCeeEEcccCCceEEe
Q 001999 742 WSAEKHLRFSAGVEEIPGE----FLTILKQAYSFELIGS-----QYAVNLSNFG---V-DNLVRLQACVIEDCNEMTSII 808 (984)
Q Consensus 742 ~~~L~~L~l~~~~~~l~~~----~~~~l~~L~~L~l~~~-----~~~~~l~~~~---~-~~l~~L~~L~l~~~~~l~~i~ 808 (984)
+++|+.|.+. +| +... ....+++|+.|.+.++ ..+..+++.+ + .++++|+.|.+ +|+.++...
T Consensus 313 ~~~L~~L~l~-~~--~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~-~~~~l~~~~ 388 (594)
T 2p1m_B 313 CPKLQRLWVL-DY--IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLY-FCRQMTNAA 388 (594)
T ss_dssp CTTCCEEEEE-GG--GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEE-EESCCCHHH
T ss_pred CCCcCEEeCc-Cc--cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHH-hcCCcCHHH
Confidence 3457788888 55 2222 2335677888877442 1222222221 1 24788888855 455543211
Q ss_pred cCCCCCcccCCCcceeecc-----ccccccccccc-c--cccCcccccceeeecccccccccCcHHHHh-hcccccEEee
Q 001999 809 DGNHRGVVPFQGLNNLHIK-----NLPKLMHIWVG-P--IASGSLNSLRTLRVKICHSIKTLFSKEMVA-QLNELQDLQV 879 (984)
Q Consensus 809 ~~~~~~~~~~~~L~~L~l~-----~~~~l~~i~~~-~--~~~~~l~~L~~L~l~~c~~L~~l~~~~~l~-~l~~L~~L~l 879 (984)
... ....+++|+.|.+. +|..+...... . .....+++|+.|++++ .+++. ....+. .+++|++|++
T Consensus 389 ~~~--l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~-~~~~l~~~~~~L~~L~L 463 (594)
T 2p1m_B 389 LIT--IARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDK-VFEYIGTYAKKMEMLSV 463 (594)
T ss_dssp HHH--HHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHH-HHHHHHHHCTTCCEEEE
T ss_pred HHH--HHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHH-HHHHHHHhchhccEeec
Confidence 100 01136899999998 56666532110 0 0124678999999966 55554 223344 4899999999
Q ss_pred cccchhHHHhhcCcccccCCCCcccEeeccCCccccccCCC-CccCCCCcceEeeccccc
Q 001999 880 EDCQMIEEIVEAGTVLAIGEFPKLKTLELIDLPKLSTICNS-LLLPWPSLETIKIKACNA 938 (984)
Q Consensus 880 ~~c~~l~~i~~~~~~~~~~~~~~L~~L~L~~c~~L~~i~~~-~~~~l~sL~~L~i~~C~~ 938 (984)
++|..-.. +.......+++|++|+|++|+. +..... ....+++|+.|++++|+.
T Consensus 464 ~~~~i~~~----~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 464 AFAGDSDL----GMHHVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp ESCCSSHH----HHHHHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred cCCCCcHH----HHHHHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 99874221 1212225689999999999885 432221 234589999999999985
No 67
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.65 E-value=6.4e-16 Score=166.75 Aligned_cols=121 Identities=21% Similarity=0.243 Sum_probs=80.7
Q ss_pred eEeeeccCCCCCCCCCCCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccC-CcchhcccccCeEecCCCcc
Q 001999 501 KKLSLFGFPSSTLPDMPNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCL-PPSISRLINLNALFLRSCSL 579 (984)
Q Consensus 501 r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~c~~ 579 (984)
+.+...++.+..+|. .-.++|+.|++++|.+..++...|.++++|++|++++|.++.+ |..++.+++|++|++++|..
T Consensus 14 ~~~~c~~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 92 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92 (285)
T ss_dssp CEEECCSSCCSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred eEEEcCcCCcccCCc-CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCC
Confidence 445555555655553 2245777777777777777665567777777777777777765 55677777777777777654
Q ss_pred cccC-chhhhccCCCcEEEecCcccccc-chhhhccCCCCeeecc
Q 001999 580 LFQL-PKEIRYLQKLEILDVRHTRIQCL-PSEIGQLIKLKCLRVS 622 (984)
Q Consensus 580 l~~l-p~~i~~L~~L~~L~l~~~~l~~l-p~~~~~L~~L~~L~l~ 622 (984)
++.+ |..+..+++|++|++++|.+..+ |..+..+++|++|+++
T Consensus 93 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 137 (285)
T 1ozn_A 93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQ 137 (285)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred ccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECC
Confidence 5555 55667777777777777777655 3446667777777776
No 68
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.64 E-value=7.6e-17 Score=193.67 Aligned_cols=383 Identities=12% Similarity=0.046 Sum_probs=207.5
Q ss_pred ccCeEeeeccCCCCCC--CCC-CCcCceeEEEecCc-ccCCC-cchHhhcCCCccEEeccCCCCcc-----CCcchhccc
Q 001999 498 KDTKKLSLFGFPSSTL--PDM-PNCCEILTLIVEGR-RLEKL-PMSFFEYMCHLQLLDLHDTSIRC-----LPPSISRLI 567 (984)
Q Consensus 498 ~~~r~l~l~~~~~~~l--~~~-~~~~~L~~L~l~~~-~l~~l-~~~~~~~l~~Lr~L~L~~~~i~~-----lp~~i~~l~ 567 (984)
+.+++|.+.++.+... ..+ ..+++|++|++.++ .+... ...++.++++|++|+|++|.++. ++.....++
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~ 184 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT 184 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence 4677777777654431 111 14678888888766 34321 12235577888888888876553 222233666
Q ss_pred ccCeEecCCCc-cc--ccCchhhhccCCCcEEEecCc-cccccchhhhccCCCCeeecccccc-cCccccC---------
Q 001999 568 NLNALFLRSCS-LL--FQLPKEIRYLQKLEILDVRHT-RIQCLPSEIGQLIKLKCLRVSWVEN-VGNHTHA--------- 633 (984)
Q Consensus 568 ~L~~L~L~~c~-~l--~~lp~~i~~L~~L~~L~l~~~-~l~~lp~~~~~L~~L~~L~l~~~~~-~~~~~l~--------- 633 (984)
+|++|++++|. .+ ..++..+.++++|++|++++| .+..+|..+..+++|++|+++.+.. .......
T Consensus 185 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~ 264 (594)
T 2p1m_B 185 SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGC 264 (594)
T ss_dssp CCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTC
T ss_pred cCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcC
Confidence 88888888764 11 112223345688888888877 5566777777778888887653211 0000000
Q ss_pred ----C-----CCCCcccchhhhhccccccceeeeecCCchhHHhhhhhhhHHHhhccCCCceEEEecCCcchhhhhhhcc
Q 001999 634 ----G-----AWPGEMISSNIISKLCLLEELIIEVLDPSDRRWKQNVESIAGEIAALEQLTTLHFYFPTIKCFKTFINRR 704 (984)
Q Consensus 634 ----~-----~~~~~~ip~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 704 (984)
. ......++ ..+..+++|++|++.++... ......-+..+++|+.|++..+ ... ...
T Consensus 265 ~~L~~Ls~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~l~-------~~~l~~~~~~~~~L~~L~l~~~-~~~-~~l---- 330 (594)
T 2p1m_B 265 KELRCLSGFWDAVPAYLP-AVYSVCSRLTTLNLSYATVQ-------SYDLVKLLCQCPKLQRLWVLDY-IED-AGL---- 330 (594)
T ss_dssp TTCCEEECCBTCCGGGGG-GGHHHHTTCCEEECTTCCCC-------HHHHHHHHTTCTTCCEEEEEGG-GHH-HHH----
T ss_pred CCcccccCCcccchhhHH-HHHHhhCCCCEEEccCCCCC-------HHHHHHHHhcCCCcCEEeCcCc-cCH-HHH----
Confidence 0 00000122 11334556666665544322 1122223445566666666533 110 000
Q ss_pred cccCCCCCCCCCCcceeEEEecccCccceeccccccccccccceEEc-------cCCCCchhH----HHHHhhhccceee
Q 001999 705 KSVNGNKSRHGDNFKSFNIVVGYPQSTSLLAGFDVSEWSAEKHLRFS-------AGVEEIPGE----FLTILKQAYSFEL 773 (984)
Q Consensus 705 ~~~~~~~~~~~~~~l~~~~~~g~~~~~~~l~~~~~p~~~~L~~L~l~-------~~~~~l~~~----~~~~l~~L~~L~l 773 (984)
..+ ...++.|+.|.+. .+|..+... ....+++|+.|.+
T Consensus 331 ------------------------------~~l-~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~ 379 (594)
T 2p1m_B 331 ------------------------------EVL-ASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLY 379 (594)
T ss_dssp ------------------------------HHH-HHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEE
T ss_pred ------------------------------HHH-HHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHH
Confidence 000 0123347777773 134444443 2234677888843
Q ss_pred cccccccccccccc-ccccccCeeEEc-----ccCCceEEecCCC--CCcccCCCcceeeccccccccccccccccc-Cc
Q 001999 774 IGSQYAVNLSNFGV-DNLVRLQACVIE-----DCNEMTSIIDGNH--RGVVPFQGLNNLHIKNLPKLMHIWVGPIAS-GS 844 (984)
Q Consensus 774 ~~~~~~~~l~~~~~-~~l~~L~~L~l~-----~~~~l~~i~~~~~--~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~-~~ 844 (984)
+++.++......+ .++++|+.|+++ +|+.++..+...+ .....+++|+.|++++ .+.... .... ..
T Consensus 380 -~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~--~~~l~~~ 454 (594)
T 2p1m_B 380 -FCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKV--FEYIGTY 454 (594)
T ss_dssp -EESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHH--HHHHHHH
T ss_pred -hcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHH--HHHHHHh
Confidence 3333332211122 258999999999 5666654332100 0123468999999976 333211 0111 24
Q ss_pred ccccceeeecccccccccCcHHHHhhcccccEEeecccchhHHHhhcCcccccCCCCcccEeeccCCccccccCCCCc-c
Q 001999 845 LNSLRTLRVKICHSIKTLFSKEMVAQLNELQDLQVEDCQMIEEIVEAGTVLAIGEFPKLKTLELIDLPKLSTICNSLL-L 923 (984)
Q Consensus 845 l~~L~~L~l~~c~~L~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~L~~L~L~~c~~L~~i~~~~~-~ 923 (984)
+++|+.|++++| .+++.........+++|++|+|++|..-.. +.......+++|++|++++|+. +.-....+ .
T Consensus 455 ~~~L~~L~L~~~-~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~----~~~~~~~~l~~L~~L~l~~~~~-~~~~~~~l~~ 528 (594)
T 2p1m_B 455 AKKMEMLSVAFA-GDSDLGMHHVLSGCDSLRKLEIRDCPFGDK----ALLANASKLETMRSLWMSSCSV-SFGACKLLGQ 528 (594)
T ss_dssp CTTCCEEEEESC-CSSHHHHHHHHHHCTTCCEEEEESCSCCHH----HHHHTGGGGGGSSEEEEESSCC-BHHHHHHHHH
T ss_pred chhccEeeccCC-CCcHHHHHHHHhcCCCcCEEECcCCCCcHH----HHHHHHHhCCCCCEEeeeCCCC-CHHHHHHHHH
Confidence 789999999999 576552223337799999999999986321 2222345689999999999985 22111011 3
Q ss_pred CCCCcceEeeccc
Q 001999 924 PWPSLETIKIKAC 936 (984)
Q Consensus 924 ~l~sL~~L~i~~C 936 (984)
.+|.|+...+...
T Consensus 529 ~lp~l~i~~~~~~ 541 (594)
T 2p1m_B 529 KMPKLNVEVIDER 541 (594)
T ss_dssp HCTTEEEEEECSS
T ss_pred hCCCCEEEEecCC
Confidence 5677776666543
No 69
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.64 E-value=8e-17 Score=176.65 Aligned_cols=96 Identities=19% Similarity=0.218 Sum_probs=65.1
Q ss_pred ceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCC-cchhcccccCeEecCCCcccccCchhhhccCCCcEEEec
Q 001999 521 EILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLP-PSISRLINLNALFLRSCSLLFQLPKEIRYLQKLEILDVR 599 (984)
Q Consensus 521 ~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~ 599 (984)
.++.++++.+.+...+...+..+++|++|+|++|.++.++ ..++.+++|++|+|++|. +...+. ++.+++|++|+++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~l~~L~~L~Ls 88 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLN 88 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSC-CEEEEE-ETTCTTCCEEECC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCc-CCcchh-hhhcCCCCEEECc
Confidence 3455555566666555565666777777888777777664 467777777777777754 444443 7777777777777
Q ss_pred CccccccchhhhccCCCCeeecc
Q 001999 600 HTRIQCLPSEIGQLIKLKCLRVS 622 (984)
Q Consensus 600 ~~~l~~lp~~~~~L~~L~~L~l~ 622 (984)
+|.++.+| .+++|++|+++
T Consensus 89 ~n~l~~l~----~~~~L~~L~l~ 107 (317)
T 3o53_A 89 NNYVQELL----VGPSIETLHAA 107 (317)
T ss_dssp SSEEEEEE----ECTTCCEEECC
T ss_pred CCcccccc----CCCCcCEEECC
Confidence 77777665 33677777777
No 70
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.64 E-value=5.2e-16 Score=169.37 Aligned_cols=121 Identities=20% Similarity=0.215 Sum_probs=95.6
Q ss_pred eEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCCcc-hhcccccCeEecCCCcccccC---chhhhccCCCcEEEe
Q 001999 523 LTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLPPS-ISRLINLNALFLRSCSLLFQL---PKEIRYLQKLEILDV 598 (984)
Q Consensus 523 ~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~c~~l~~l---p~~i~~L~~L~~L~l 598 (984)
+.++++++.++.+|..+ .++|++|+|++|.++.+|.. +..+++|++|++++|. ++.+ |..+..+++|++|++
T Consensus 10 ~~l~c~~~~l~~ip~~~---~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNG-LSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TEEECCSSCCSSCCSCC---CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCEEEEEEHHHHSCSCCCEEEC
T ss_pred CEEEcCCCCcccCCCCC---CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCc-cCcccCcccccccccccCEEEC
Confidence 46788888899999763 36899999999999999875 6899999999999965 4443 677888999999999
Q ss_pred cCccccccchhhhccCCCCeeecccccccCccccCCCCCCcccch-hhhhccccccceeeee
Q 001999 599 RHTRIQCLPSEIGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISS-NIISKLCLLEELIIEV 659 (984)
Q Consensus 599 ~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~-~~l~~L~~L~~L~l~~ 659 (984)
++|.+..+|..+..+++|++|+++ ++.... ++. ..+.++++|+.|++.+
T Consensus 86 s~n~i~~l~~~~~~l~~L~~L~l~-----~n~l~~-------~~~~~~~~~l~~L~~L~l~~ 135 (306)
T 2z66_A 86 SFNGVITMSSNFLGLEQLEHLDFQ-----HSNLKQ-------MSEFSVFLSLRNLIYLDISH 135 (306)
T ss_dssp CSCSEEEEEEEEETCTTCCEEECT-----TSEEES-------STTTTTTTTCTTCCEEECTT
T ss_pred CCCccccChhhcCCCCCCCEEECC-----CCcccc-------cccchhhhhccCCCEEECCC
Confidence 999999999889999999999998 554332 332 3356666666666654
No 71
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.64 E-value=3.9e-16 Score=171.12 Aligned_cols=124 Identities=15% Similarity=0.123 Sum_probs=99.8
Q ss_pred CCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCCcchhcccccCeEecCCCcccccCchhhhccCCCcEE
Q 001999 517 PNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLPPSISRLINLNALFLRSCSLLFQLPKEIRYLQKLEIL 596 (984)
Q Consensus 517 ~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L 596 (984)
..+++|+.|++++|.+..++...|.++++|++|+|++|.++..++ ++.+++|++|++++|. ++.+| .+++|++|
T Consensus 31 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~-l~~l~----~~~~L~~L 104 (317)
T 3o53_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELL----VGPSIETL 104 (317)
T ss_dssp TTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSE-EEEEE----ECTTCCEE
T ss_pred ccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCc-ccccc----CCCCcCEE
Confidence 456799999999999999887779999999999999999987765 8999999999999974 66554 45899999
Q ss_pred EecCccccccchhhhccCCCCeeecccccccCccccCCCCCCcccchhhhhccccccceeeeec
Q 001999 597 DVRHTRIQCLPSEIGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSNIISKLCLLEELIIEVL 660 (984)
Q Consensus 597 ~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~~L~~L~~L~l~~~ 660 (984)
++++|.+..++.. .+++|++|+++ ++.... ++...++.+++|+.|++++.
T Consensus 105 ~l~~n~l~~~~~~--~~~~L~~L~l~-----~N~l~~-------~~~~~~~~l~~L~~L~Ls~N 154 (317)
T 3o53_A 105 HAANNNISRVSCS--RGQGKKNIYLA-----NNKITM-------LRDLDEGCRSRVQYLDLKLN 154 (317)
T ss_dssp ECCSSCCSEEEEC--CCSSCEEEECC-----SSCCCS-------GGGBCTGGGSSEEEEECTTS
T ss_pred ECCCCccCCcCcc--ccCCCCEEECC-----CCCCCC-------ccchhhhccCCCCEEECCCC
Confidence 9999999987653 47899999998 554332 44444677777777777653
No 72
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.59 E-value=2e-15 Score=162.86 Aligned_cols=179 Identities=23% Similarity=0.342 Sum_probs=146.5
Q ss_pred hhccCeEeeeccCCCCCCCC--CCCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCC-CccC-CcchhcccccCe
Q 001999 496 EWKDTKKLSLFGFPSSTLPD--MPNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTS-IRCL-PPSISRLINLNA 571 (984)
Q Consensus 496 ~~~~~r~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~-i~~l-p~~i~~l~~L~~ 571 (984)
...++++|.+.+|.+..++. +..+++|++|++++|.+..++...|.++++|++|++++|. +..+ |..+..+++|++
T Consensus 30 ~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~ 109 (285)
T 1ozn_A 30 IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT 109 (285)
T ss_dssp CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCE
Confidence 34689999999999988763 6889999999999999998866669999999999999996 8888 678999999999
Q ss_pred EecCCCcccccCchhhhccCCCcEEEecCccccccchh-hhccCCCCeeecccccccCccccCCCCCCcccchhhhhccc
Q 001999 572 LFLRSCSLLFQLPKEIRYLQKLEILDVRHTRIQCLPSE-IGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSNIISKLC 650 (984)
Q Consensus 572 L~L~~c~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~-~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~~L~ 650 (984)
|++++|......|..++++++|++|++++|.+..+|.. ++.+++|++|+++ ++... .++...+.+++
T Consensus 110 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~-----~n~l~-------~~~~~~~~~l~ 177 (285)
T 1ozn_A 110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLH-----GNRIS-------SVPERAFRGLH 177 (285)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-----SSCCC-------EECTTTTTTCT
T ss_pred EECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECC-----CCccc-------ccCHHHhcCcc
Confidence 99999764434467789999999999999999988865 8899999999998 55433 46666688899
Q ss_pred cccceeeeecCCchhHHhhhhhhhHHHhhccCCCceEEEecCCc
Q 001999 651 LLEELIIEVLDPSDRRWKQNVESIAGEIAALEQLTTLHFYFPTI 694 (984)
Q Consensus 651 ~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 694 (984)
+|+.|++.+.... ...+..+..+++|+.|+++.+..
T Consensus 178 ~L~~L~l~~n~l~--------~~~~~~~~~l~~L~~L~l~~n~l 213 (285)
T 1ozn_A 178 SLDRLLLHQNRVA--------HVHPHAFRDLGRLMTLYLFANNL 213 (285)
T ss_dssp TCCEEECCSSCCC--------EECTTTTTTCTTCCEEECCSSCC
T ss_pred ccCEEECCCCccc--------ccCHhHccCcccccEeeCCCCcC
Confidence 9999999864432 22345667788888888876543
No 73
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.57 E-value=9.8e-16 Score=167.54 Aligned_cols=152 Identities=16% Similarity=0.164 Sum_probs=89.9
Q ss_pred cCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCcc--CCcchh-------cccccCeEecCCCcccccCchhh--
Q 001999 519 CCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRC--LPPSIS-------RLINLNALFLRSCSLLFQLPKEI-- 587 (984)
Q Consensus 519 ~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~--lp~~i~-------~l~~L~~L~L~~c~~l~~lp~~i-- 587 (984)
.++|+.|++++|.+ .+|..+... |++|+|++|.+.. +|..+. ++.+|++|+|++|.....+|..+
T Consensus 42 ~~~L~~l~l~~n~l-~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE-ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EEECTTHHHHCCTT-CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred CCCceeEeeccccc-ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 44566666666666 666553322 6666777766642 455444 56777777777755333566654
Q ss_pred hccCCCcEEEecCccccccchhhhcc-----CCCCeeecccccccCccccCCCCCCcccchhhhhccccccceeeeecCC
Q 001999 588 RYLQKLEILDVRHTRIQCLPSEIGQL-----IKLKCLRVSWVENVGNHTHAGAWPGEMISSNIISKLCLLEELIIEVLDP 662 (984)
Q Consensus 588 ~~L~~L~~L~l~~~~l~~lp~~~~~L-----~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~~L~~L~~L~l~~~~~ 662 (984)
+.+++|++|++++|++..+|..++.+ ++|++|+++ ++... .++...++++++|++|++++...
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~-----~N~l~-------~~~~~~~~~l~~L~~L~Ls~N~l 185 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIA-----QAHSL-------NFSCEQVRVFPALSTLDLSDNPE 185 (312)
T ss_dssp CCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEE-----SCSCC-------CCCTTTCCCCSSCCEEECCSCTT
T ss_pred hcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEee-----CCCCc-------cchHHHhccCCCCCEEECCCCCc
Confidence 66777777777777777666666665 677777776 44332 24434466677777777765332
Q ss_pred chhHHhhhhhhhHHHh--hccCCCceEEEecC
Q 001999 663 SDRRWKQNVESIAGEI--AALEQLTTLHFYFP 692 (984)
Q Consensus 663 ~~~~~~~~~~~~~~~l--~~l~~L~~L~l~~~ 692 (984)
.. ....+..+ ..+++|+.|+++.+
T Consensus 186 ~~------~~~~~~~~~~~~l~~L~~L~L~~N 211 (312)
T 1wwl_A 186 LG------ERGLISALCPLKFPTLQVLALRNA 211 (312)
T ss_dssp CH------HHHHHHHSCTTSCTTCCEEECTTS
T ss_pred Cc------chHHHHHHHhccCCCCCEEECCCC
Confidence 21 11123334 66777777777644
No 74
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.56 E-value=2.8e-15 Score=174.19 Aligned_cols=148 Identities=15% Similarity=0.144 Sum_probs=100.5
Q ss_pred CCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCCcchhcccccCeEecCCCcccccCchhhhccCCCcEE
Q 001999 517 PNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLPPSISRLINLNALFLRSCSLLFQLPKEIRYLQKLEIL 596 (984)
Q Consensus 517 ~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L 596 (984)
..+++|++|++++|.+..+++..|.++++|++|+|++|.++..++ ++.+++|++|+|++|. ++.+|. .++|++|
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~----~~~L~~L 104 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELLV----GPSIETL 104 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE-EEEEEE----CTTCCEE
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc-CCCCCC----CCCcCEE
Confidence 455688888888888888876668888888888888888876654 8888888888888864 555543 3788888
Q ss_pred EecCccccccchhhhccCCCCeeecccccccCccccCCCCCCcccchhhhhccccccceeeeecCCchhHHhhhhhhhHH
Q 001999 597 DVRHTRIQCLPSEIGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSNIISKLCLLEELIIEVLDPSDRRWKQNVESIAG 676 (984)
Q Consensus 597 ~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~ 676 (984)
++++|.+..+|.. .+++|++|+++ +|.... ++...++.+++|+.|++++..... ..+.
T Consensus 105 ~L~~N~l~~~~~~--~l~~L~~L~L~-----~N~l~~-------~~~~~~~~l~~L~~L~Ls~N~l~~--------~~~~ 162 (487)
T 3oja_A 105 HAANNNISRVSCS--RGQGKKNIYLA-----NNKITM-------LRDLDEGCRSRVQYLDLKLNEIDT--------VNFA 162 (487)
T ss_dssp ECCSSCCCCEEEC--CCSSCEEEECC-----SSCCCS-------GGGBCGGGGSSEEEEECTTSCCCE--------EEGG
T ss_pred ECcCCcCCCCCcc--ccCCCCEEECC-----CCCCCC-------CCchhhcCCCCCCEEECCCCCCCC--------cChH
Confidence 8888888877653 56788888887 544332 333346677777777776533321 1222
Q ss_pred Hhh-ccCCCceEEEecC
Q 001999 677 EIA-ALEQLTTLHFYFP 692 (984)
Q Consensus 677 ~l~-~l~~L~~L~l~~~ 692 (984)
.+. .+++|+.|+++.+
T Consensus 163 ~l~~~l~~L~~L~Ls~N 179 (487)
T 3oja_A 163 ELAASSDTLEHLNLQYN 179 (487)
T ss_dssp GGGGGTTTCCEEECTTS
T ss_pred HHhhhCCcccEEecCCC
Confidence 332 4566666666533
No 75
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.56 E-value=2.9e-13 Score=150.61 Aligned_cols=287 Identities=11% Similarity=0.050 Sum_probs=177.9
Q ss_pred CCCCCCchHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCC------CHHHHHHH
Q 001999 152 HASKFPSHKEYVETLEKHLSSGGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDG------NISDIQEI 225 (984)
Q Consensus 152 ~~~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~------~~~~i~~~ 225 (984)
.+..++||+++++.|.+++..+ +++.|+|++|+|||||+++..+... .+|+.+.... +...+...
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 80 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNERP-------GILIDCRELYAERGHITREELIKE 80 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHSS-------EEEEEHHHHHHTTTCBCHHHHHHH
T ss_pred ChHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHcC-------cEEEEeecccccccCCCHHHHHHH
Confidence 4467999999999999998754 7999999999999999999665541 6777765432 55666676
Q ss_pred HHHHhcc-----------------Ccc--ccchHHHHHHHHHHHcC-CcEEEEEECCCCccc--------h-hhh-cccc
Q 001999 226 ILERLKV-----------------NAK--ELDNAQRADNISKELKD-KRYVLFLDGVSSEIN--------F-KEI-GIHD 275 (984)
Q Consensus 226 i~~~l~~-----------------~~~--~~~~~~~~~~l~~~L~~-kr~LlVlDdv~~~~~--------~-~~~-~~~~ 275 (984)
+.+.+.. ... ...-++....+.+..+. ++++||+||++...+ + ..+ .+..
T Consensus 81 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~ 160 (350)
T 2qen_A 81 LQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYD 160 (350)
T ss_dssp HHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHH
Confidence 6665542 000 01114455556555543 399999999987443 1 111 1112
Q ss_pred CCCCcEEEEEcCCccc-------cc------cC-CceEEccCCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCC
Q 001999 276 DHGRGKVVFACRSREF-------CW------QA-DDVIHVERLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGM 341 (984)
Q Consensus 276 ~~~gs~ilvTTR~~~v-------~~------~~-~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~Gl 341 (984)
...+.++|+|++.... .. +. ...+.+.+|+.+|+.+++.+.+.... .+.-.+.+.+|++.|+|.
T Consensus 161 ~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~--~~~~~~~~~~i~~~tgG~ 238 (350)
T 2qen_A 161 SLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVN--LDVPENEIEEAVELLDGI 238 (350)
T ss_dssp HCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTT--CCCCHHHHHHHHHHHTTC
T ss_pred hcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHhCCC
Confidence 2357899999876532 11 12 34899999999999999988653221 111245788999999999
Q ss_pred chHHHHHHHHhhcCccHHHHHHHHHHhhcCCccccccHHHHHHHHHHHHhcC---hHHHHHHHhhhcccCCCCccCHHHH
Q 001999 342 PYMLKLIGKELVNQSEVAIWRATVDDLRSTSSEEKKELEEVYRFFKLVYKNL---SSVQQHCLLGWAIFPTGLEISQDYI 418 (984)
Q Consensus 342 Plai~~~~~~l~~~~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L---~~~~k~cfl~~s~fp~~~~i~~~~L 418 (984)
|+++..++..+....+...+ ...+. +.+...+.-.+..+ ++..+..+..+|. + .++...+
T Consensus 239 P~~l~~~~~~~~~~~~~~~~---~~~~~----------~~~~~~~~~~l~~l~~~~~~~~~~l~~la~---g-~~~~~~l 301 (350)
T 2qen_A 239 PGWLVVFGVEYLRNGDFGRA---MKRTL----------EVAKGLIMGELEELRRRSPRYVDILRAIAL---G-YNRWSLI 301 (350)
T ss_dssp HHHHHHHHHHHHHHCCHHHH---HHHHH----------HHHHHHHHHHHHHHHHHCHHHHHHHHHHHT---T-CCSHHHH
T ss_pred HHHHHHHHHHHhccccHhHH---HHHHH----------HHHHHHHHHHHHHHHhCChhHHHHHHHHHh---C-CCCHHHH
Confidence 99999988765331122222 11110 11111111112222 6778888888887 2 2445555
Q ss_pred HHHHhhcCCCCccCcccchhhHHHHHHHHHhhcccccccccccccchHHHHHHHHH
Q 001999 419 IDCWAAQKFLPRFGKIGDARDTGCLILDKFEKKSLLQKQSKEKRYKMIEFFQRAAL 474 (984)
Q Consensus 419 i~~W~aeg~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~mHdlv~~~a~ 474 (984)
.....+.. - .........+++.|.+.+++...+ ..+.-.|++++++.+
T Consensus 302 ~~~~~~~~-~------~~~~~~~~~~l~~L~~~gli~~~~-~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 302 RDYLAVKG-T------KIPEPRLYALLENLKKMNWIVEED-NTYKIADPVVATVLR 349 (350)
T ss_dssp HHHHHHTT-C------CCCHHHHHHHHHHHHHTTSEEEET-TEEEESSHHHHHHHT
T ss_pred HHHHHHHh-C------CCCHHHHHHHHHHHHhCCCEEecC-CEEEEecHHHHHHHc
Confidence 44432210 0 011345678999999999998753 233345788887753
No 76
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.55 E-value=1.2e-14 Score=160.93 Aligned_cols=149 Identities=15% Similarity=0.130 Sum_probs=100.1
Q ss_pred eeEEEecCcccCCCcchHhhcC--CCccEEeccCCCCccCCcchhcccccCeEecCCCccccc-CchhhhccCCCcEEEe
Q 001999 522 ILTLIVEGRRLEKLPMSFFEYM--CHLQLLDLHDTSIRCLPPSISRLINLNALFLRSCSLLFQ-LPKEIRYLQKLEILDV 598 (984)
Q Consensus 522 L~~L~l~~~~l~~l~~~~~~~l--~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~-lp~~i~~L~~L~~L~l 598 (984)
++.++++++.+. +..+..+ +.+++|+++++.+...+..+..+.+|++|++++|..... +|..+.++++|++|++
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L 125 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL 125 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC
Confidence 445666665544 3336666 789999999988887766677889999999998763223 7777888899999999
Q ss_pred cCcccc-ccchhhhccCCCCeeecccccccCccccCCCCCCcccchhhhhccccccceeeeec-CCchhHHhhhhhhhHH
Q 001999 599 RHTRIQ-CLPSEIGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSNIISKLCLLEELIIEVL-DPSDRRWKQNVESIAG 676 (984)
Q Consensus 599 ~~~~l~-~lp~~~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~~L~~L~~L~l~~~-~~~~~~~~~~~~~~~~ 676 (984)
++|.+. ..|..++.+++|++|+++ +|.... +..++ ..++++++|++|++.++ ... ......
T Consensus 126 ~~~~l~~~~~~~l~~~~~L~~L~L~-----~~~~l~----~~~l~-~~~~~~~~L~~L~l~~~~~l~-------~~~~~~ 188 (336)
T 2ast_B 126 EGLRLSDPIVNTLAKNSNLVRLNLS-----GCSGFS----EFALQ-TLLSSCSRLDELNLSWCFDFT-------EKHVQV 188 (336)
T ss_dssp TTCBCCHHHHHHHTTCTTCSEEECT-----TCBSCC----HHHHH-HHHHHCTTCCEEECCCCTTCC-------HHHHHH
T ss_pred cCcccCHHHHHHHhcCCCCCEEECC-----CCCCCC----HHHHH-HHHhcCCCCCEEcCCCCCCcC-------hHHHHH
Confidence 998877 667778888899999988 442221 00122 23566777777777654 332 122344
Q ss_pred HhhccC-CCceEEEe
Q 001999 677 EIAALE-QLTTLHFY 690 (984)
Q Consensus 677 ~l~~l~-~L~~L~l~ 690 (984)
.+..++ +|+.|+++
T Consensus 189 ~~~~l~~~L~~L~l~ 203 (336)
T 2ast_B 189 AVAHVSETITQLNLS 203 (336)
T ss_dssp HHHHSCTTCCEEECC
T ss_pred HHHhcccCCCEEEeC
Confidence 455666 66666665
No 77
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.55 E-value=6.3e-14 Score=152.66 Aligned_cols=170 Identities=18% Similarity=0.312 Sum_probs=127.5
Q ss_pred ChhhhccCeEeeeccCCCCCCCCCCCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCCcchhcccccCeE
Q 001999 493 SEEEWKDTKKLSLFGFPSSTLPDMPNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLPPSISRLINLNAL 572 (984)
Q Consensus 493 ~~~~~~~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L 572 (984)
.....++++.|.+.++.+..++.+..+++|+.|++++|.+..++. +..+++|++|++++|.++.++ .++.+.+|++|
T Consensus 36 ~~~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L 112 (308)
T 1h6u_A 36 TQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKTL 112 (308)
T ss_dssp CHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEE
T ss_pred cHHHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCch-hhcCCCCCCEE
Confidence 344567888888888888888877888888888888888888776 788888888888888888775 58888888888
Q ss_pred ecCCCcccccCchhhhccCCCcEEEecCccccccchhhhccCCCCeeecccccccCccccCCCCCCcccchhhhhccccc
Q 001999 573 FLRSCSLLFQLPKEIRYLQKLEILDVRHTRIQCLPSEIGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSNIISKLCLL 652 (984)
Q Consensus 573 ~L~~c~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~~L~~L 652 (984)
++++|. ++.+|. ++.+++|++|++++|.+..+|. ++.+++|++|+++ ++... .++. +..+++|
T Consensus 113 ~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~-----~n~l~-------~~~~--l~~l~~L 175 (308)
T 1h6u_A 113 DLTSTQ-ITDVTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIG-----NAQVS-------DLTP--LANLSKL 175 (308)
T ss_dssp ECTTSC-CCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECC-----SSCCC-------CCGG--GTTCTTC
T ss_pred ECCCCC-CCCchh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEcc-----CCcCC-------CChh--hcCCCCC
Confidence 888864 666665 8888888888888888887765 7888888888887 54332 2332 6777788
Q ss_pred cceeeeecCCchhHHhhhhhhhHHHhhccCCCceEEEecC
Q 001999 653 EELIIEVLDPSDRRWKQNVESIAGEIAALEQLTTLHFYFP 692 (984)
Q Consensus 653 ~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 692 (984)
+.|++.+..... . ..+..+++|+.|+++.+
T Consensus 176 ~~L~l~~n~l~~---------~-~~l~~l~~L~~L~L~~N 205 (308)
T 1h6u_A 176 TTLKADDNKISD---------I-SPLASLPNLIEVHLKNN 205 (308)
T ss_dssp CEEECCSSCCCC---------C-GGGGGCTTCCEEECTTS
T ss_pred CEEECCCCccCc---------C-hhhcCCCCCCEEEccCC
Confidence 888777543321 1 12566777777777644
No 78
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.54 E-value=5.2e-14 Score=160.54 Aligned_cols=289 Identities=13% Similarity=0.104 Sum_probs=179.1
Q ss_pred CCCCchHHHHHHHHHHh-cc------CCccEEEE--EcCCCChHHHHHHHhhhhcccC---CCCC-eEEEEEeCCCCCHH
Q 001999 154 SKFPSHKEYVETLEKHL-SS------GGLKKICI--CGPLGVGKTTIMENSHDSVGES---GRFD-IIFWVNVNTDGNIS 220 (984)
Q Consensus 154 ~~~vgr~~~~~~l~~~L-~~------~~~~vi~I--~G~gGiGKTtLa~~~~~~~~~~---~~F~-~~~wv~vs~~~~~~ 220 (984)
..++||++++++|.+++ .. .....+.| +|++|+||||||+...+..... ..|+ ..+|+.+....+..
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLY 101 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHH
Confidence 67999999999999988 42 24556667 9999999999999966555310 1233 36788877777889
Q ss_pred HHHHHHHHHhccCccc--cchHHHHHHHHHHHc--CCcEEEEEECCCCcc--------chhhh-ccc-c-C--C--CCcE
Q 001999 221 DIQEIILERLKVNAKE--LDNAQRADNISKELK--DKRYVLFLDGVSSEI--------NFKEI-GIH-D-D--H--GRGK 281 (984)
Q Consensus 221 ~i~~~i~~~l~~~~~~--~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~~--------~~~~~-~~~-~-~--~--~gs~ 281 (984)
.+...++.+++..... .+.++....+.+.+. +++++||+||++... .+..+ ... . . . ....
T Consensus 102 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~ 181 (412)
T 1w5s_A 102 TILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIG 181 (412)
T ss_dssp HHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEE
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEE
Confidence 9999999998765332 122455666666665 789999999997632 12221 111 1 1 2 3445
Q ss_pred EEEEcCCcccc-------c----cCCceEEccCCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcC------CCchH
Q 001999 282 VVFACRSREFC-------W----QADDVIHVERLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECG------GMPYM 344 (984)
Q Consensus 282 ilvTTR~~~v~-------~----~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~------GlPla 344 (984)
||+||+...+. . .....+.+.+++.++.+++|...+........--.+....|++.|+ |.|..
T Consensus 182 lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G~p~~ 261 (412)
T 1w5s_A 182 FLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSARR 261 (412)
T ss_dssp EEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCCHHH
T ss_pred EEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCCcHHH
Confidence 88888755421 1 2223499999999999999987643211111122467889999999 99976
Q ss_pred HHHHHHHhhc-----C---ccHHHHHHHHHHhhcCCccccccHHHHHHHHHHHHhcChHHHHHHHhhhcccC--CCCccC
Q 001999 345 LKLIGKELVN-----Q---SEVAIWRATVDDLRSTSSEEKKELEEVYRFFKLVYKNLSSVQQHCLLGWAIFP--TGLEIS 414 (984)
Q Consensus 345 i~~~~~~l~~-----~---~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~s~fp--~~~~i~ 414 (984)
+..++..... . .+.+.+..+...... ...+.-++..||.+.+.++..++.+. .+..+.
T Consensus 262 ~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~------------~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~ 329 (412)
T 1w5s_A 262 AIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA------------ASIQTHELEALSIHELIILRLIAEATLGGMEWIN 329 (412)
T ss_dssp HHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------------CCSSSSSCHHHHHHHHHHHHHHHTTCSSBC
T ss_pred HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc------------cchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCcc
Confidence 6655543211 0 123333333322100 12334456789999999998888653 334566
Q ss_pred HHHHHHHHhhc--CCCCccCcccchhhHHHHHHHHHhhccccccc
Q 001999 415 QDYIIDCWAAQ--KFLPRFGKIGDARDTGCLILDKFEKKSLLQKQ 457 (984)
Q Consensus 415 ~~~Li~~W~ae--g~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~~ 457 (984)
..++...+... ..... ..........+++.|...+++...
T Consensus 330 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~L~~~gli~~~ 371 (412)
T 1w5s_A 330 AGLLRQRYEDASLTMYNV---KPRGYTQYHIYLKHLTSLGLVDAK 371 (412)
T ss_dssp HHHHHHHHHHHHHHHSCC---CCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHHhhcCC---CCCCHHHHHHHHHHHHhCCCEEee
Confidence 66665554211 01100 011234567889999999999764
No 79
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.53 E-value=1.1e-12 Score=146.32 Aligned_cols=284 Identities=12% Similarity=0.099 Sum_probs=172.9
Q ss_pred CCCCCCchHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCC-----CCHHHHHHHH
Q 001999 152 HASKFPSHKEYVETLEKHLSSGGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTD-----GNISDIQEII 226 (984)
Q Consensus 152 ~~~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~-----~~~~~i~~~i 226 (984)
.+..++||+++++.|.+ +.. +++.|+|++|+|||||++...+... .. .+|+.+... .+.......+
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~l 81 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELN--LP---YIYLDLRKFEERNYISYKDFLLEL 81 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHT--CC---EEEEEGGGGTTCSCCCHHHHHHHH
T ss_pred CHHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcC--CC---EEEEEchhhccccCCCHHHHHHHH
Confidence 44679999999999999 765 6999999999999999999766654 32 578887642 3445555555
Q ss_pred HHHhcc------------------Ccc----c-------cch-HHHHHHHHHHHcCCcEEEEEECCCCcc-----chhhh
Q 001999 227 LERLKV------------------NAK----E-------LDN-AQRADNISKELKDKRYVLFLDGVSSEI-----NFKEI 271 (984)
Q Consensus 227 ~~~l~~------------------~~~----~-------~~~-~~~~~~l~~~L~~kr~LlVlDdv~~~~-----~~~~~ 271 (984)
.+.+.. ... . ... ..+...+.+.-+ ++++||+||++... ++...
T Consensus 82 ~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~~~ 160 (357)
T 2fna_A 82 QKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLLPA 160 (357)
T ss_dssp HHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCHHH
T ss_pred HHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHHHH
Confidence 444311 000 0 011 333333433222 49999999997632 23222
Q ss_pred --ccccCCCCcEEEEEcCCccc-------cc------cC-CceEEccCCChHHHHHHHHHHhCCCCCCCcchHHHHHHHH
Q 001999 272 --GIHDDHGRGKVVFACRSREF-------CW------QA-DDVIHVERLSPREAKKLFWEVVGVNLKKNPDIEQEADSIV 335 (984)
Q Consensus 272 --~~~~~~~gs~ilvTTR~~~v-------~~------~~-~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~ 335 (984)
.+.+...+.++|+|+|.... .. +. ...+.+.+|+.+++.+++.+.+.......+. . .+|+
T Consensus 161 l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~---~-~~i~ 236 (357)
T 2fna_A 161 LAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD---Y-EVVY 236 (357)
T ss_dssp HHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCC---H-HHHH
T ss_pred HHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCc---H-HHHH
Confidence 11122347899999987532 11 12 3689999999999999998865321111222 1 7899
Q ss_pred HHcCCCchHHHHHHHHhhcCccHHHHHH-HHHHhhcCCccccccHHHHHHHHH-HHHh--cChHHHHHHHhhhcccCCCC
Q 001999 336 EECGGMPYMLKLIGKELVNQSEVAIWRA-TVDDLRSTSSEEKKELEEVYRFFK-LVYK--NLSSVQQHCLLGWAIFPTGL 411 (984)
Q Consensus 336 ~~c~GlPlai~~~~~~l~~~~~~~~w~~-~l~~l~~~~~~~~~~~~~i~~~l~-~sy~--~L~~~~k~cfl~~s~fp~~~ 411 (984)
+.|+|.|+++..++..+....+...|.. +.+.. ...+..-+. +.+. .+|+..+..+..+|. +.
T Consensus 237 ~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~---g~ 303 (357)
T 2fna_A 237 EKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYA----------KKLILKEFENFLHGREIARKRYLNIMRTLSK---CG 303 (357)
T ss_dssp HHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHH----------HHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT---CB
T ss_pred HHhCCCHHHHHHHHHHHccccchHHHHHHHHHHH----------HHHHHHHHHHHhhccccccHHHHHHHHHHHc---CC
Confidence 9999999999999887653323333321 11110 011111121 2221 688889999999988 22
Q ss_pred ccCHHHHHHHHh-hcCCCCccCcccchhhHHHHHHHHHhhcccccccccccccc-hHHHHHHHH
Q 001999 412 EISQDYIIDCWA-AQKFLPRFGKIGDARDTGCLILDKFEKKSLLQKQSKEKRYK-MIEFFQRAA 473 (984)
Q Consensus 412 ~i~~~~Li~~W~-aeg~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~-mHdlv~~~a 473 (984)
+...+....- ..|. .........+++.|.+.+++.... ..|+ .|++++++.
T Consensus 304 --~~~~l~~~~~~~~g~-------~~~~~~~~~~L~~L~~~gli~~~~--~~y~f~~~~~~~~l 356 (357)
T 2fna_A 304 --KWSDVKRALELEEGI-------EISDSEIYNYLTQLTKHSWIIKEG--EKYCPSEPLISLAF 356 (357)
T ss_dssp --CHHHHHHHHHHHHCS-------CCCHHHHHHHHHHHHHTTSEEESS--SCEEESSHHHHHHT
T ss_pred --CHHHHHHHHHHhcCC-------CCCHHHHHHHHHHHHhCCCEEecC--CEEEecCHHHHHhh
Confidence 4444432210 1121 011345678999999999998764 3455 688888763
No 80
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.52 E-value=4.4e-14 Score=150.89 Aligned_cols=175 Identities=28% Similarity=0.388 Sum_probs=134.0
Q ss_pred ccCeEeeeccCCCCCCCC--CCCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCCc-chhcccccCeEec
Q 001999 498 KDTKKLSLFGFPSSTLPD--MPNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLPP-SISRLINLNALFL 574 (984)
Q Consensus 498 ~~~r~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~L~~L~L 574 (984)
..+++|.+.+|.+..++. +..+++|++|++++|.+..++...|.++++|++|++++|.++.+|. .+..+.+|++|++
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 116 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL 116 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence 568888888888887764 6778889999999888888888877888899999999998888765 4678889999999
Q ss_pred CCCcccccCc-hhhhccCCCcEEEecCccccccchh-hhccCCCCeeecccccccCccccCCCCCCcccchhhhhccccc
Q 001999 575 RSCSLLFQLP-KEIRYLQKLEILDVRHTRIQCLPSE-IGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSNIISKLCLL 652 (984)
Q Consensus 575 ~~c~~l~~lp-~~i~~L~~L~~L~l~~~~l~~lp~~-~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~~L~~L 652 (984)
++|. ++.+| ..++++++|++|++++|.+..+|.. +..+++|++|+++ ++... .++...+.++++|
T Consensus 117 ~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~-----~n~l~-------~~~~~~~~~l~~L 183 (270)
T 2o6q_A 117 DRNQ-LKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLY-----NNQLK-------RVPEGAFDKLTEL 183 (270)
T ss_dssp CSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-----SSCCS-------CCCTTTTTTCTTC
T ss_pred CCCc-cCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEec-----CCcCc-------EeChhHhccCCCc
Confidence 8865 55554 4578889999999999988888765 6788899999888 54433 3565567888888
Q ss_pred cceeeeecCCchhHHhhhhhhhHHHhhccCCCceEEEecCC
Q 001999 653 EELIIEVLDPSDRRWKQNVESIAGEIAALEQLTTLHFYFPT 693 (984)
Q Consensus 653 ~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 693 (984)
+.|++.+..... .....+..+++|+.|+++.+.
T Consensus 184 ~~L~L~~N~l~~--------~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 184 KTLKLDNNQLKR--------VPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CEEECCSSCCSC--------CCTTTTTTCTTCCEEECCSSC
T ss_pred CEEECCCCcCCc--------CCHHHhccccCCCEEEecCCC
Confidence 888887643321 112245678888888888664
No 81
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.52 E-value=9e-15 Score=169.87 Aligned_cols=242 Identities=13% Similarity=0.122 Sum_probs=149.6
Q ss_pred CCCccEEeccCCCCccCC-cchhcccccCeEecCCCcccccCchhhhccCCCcEEEecCccccccchhhhccCCCCeeec
Q 001999 543 MCHLQLLDLHDTSIRCLP-PSISRLINLNALFLRSCSLLFQLPKEIRYLQKLEILDVRHTRIQCLPSEIGQLIKLKCLRV 621 (984)
Q Consensus 543 l~~Lr~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l 621 (984)
+++|++|+|++|.++.++ ..++.+++|++|+|++|. ++..++ ++.+++|++|++++|.+..+|. .++|++|++
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L 106 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLHA 106 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC-CEEEEE-CTTCTTCCEEECCSSEEEEEEE----CTTCCEEEC
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC-CCCCcc-cccCCCCCEEEecCCcCCCCCC----CCCcCEEEC
Confidence 348999999999998874 578899999999999875 454444 8889999999999998887764 378999998
Q ss_pred ccccccCccccCCCCCCcccchhhhhccccccceeeeecCCchhHHhhhhhhhHHHhhccCCCceEEEecCCcchhhhhh
Q 001999 622 SWVENVGNHTHAGAWPGEMISSNIISKLCLLEELIIEVLDPSDRRWKQNVESIAGEIAALEQLTTLHFYFPTIKCFKTFI 701 (984)
Q Consensus 622 ~~~~~~~~~~l~~~~~~~~ip~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 701 (984)
+ +|.... ++. ..+++|+.|++.+..... ..+..+..+
T Consensus 107 ~-----~N~l~~-------~~~---~~l~~L~~L~L~~N~l~~--------~~~~~~~~l-------------------- 143 (487)
T 3oja_A 107 A-----NNNISR-------VSC---SRGQGKKNIYLANNKITM--------LRDLDEGCR-------------------- 143 (487)
T ss_dssp C-----SSCCCC-------EEE---CCCSSCEEEECCSSCCCS--------GGGBCGGGG--------------------
T ss_pred c-----CCcCCC-------CCc---cccCCCCEEECCCCCCCC--------CCchhhcCC--------------------
Confidence 8 543322 221 234455555554322211 111122333
Q ss_pred hcccccCCCCCCCCCCcceeEEEecccCccceeccccccccccccceEEccCCCCchhHHHHHhhhccceeecccccccc
Q 001999 702 NRRKSVNGNKSRHGDNFKSFNIVVGYPQSTSLLAGFDVSEWSAEKHLRFSAGVEEIPGEFLTILKQAYSFELIGSQYAVN 781 (984)
Q Consensus 702 ~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~l~~~~~p~~~~L~~L~l~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~ 781 (984)
T Consensus 144 -------------------------------------------------------------------------------- 143 (487)
T 3oja_A 144 -------------------------------------------------------------------------------- 143 (487)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccccCeeEEcccCCceEEecCCCCCcccCCCcceeecccccccccccccccccCcccccceeeecccccccc
Q 001999 782 LSNFGVDNLVRLQACVIEDCNEMTSIIDGNHRGVVPFQGLNNLHIKNLPKLMHIWVGPIASGSLNSLRTLRVKICHSIKT 861 (984)
Q Consensus 782 l~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~c~~L~~ 861 (984)
++|+.|+++++. +..++.... ...+++|+.|+|+++. +..+ .....+++|+.|++++| .++.
T Consensus 144 ---------~~L~~L~Ls~N~-l~~~~~~~l--~~~l~~L~~L~Ls~N~-l~~~----~~~~~l~~L~~L~Ls~N-~l~~ 205 (487)
T 3oja_A 144 ---------SRVQYLDLKLNE-IDTVNFAEL--AASSDTLEHLNLQYNF-IYDV----KGQVVFAKLKTLDLSSN-KLAF 205 (487)
T ss_dssp ---------SSEEEEECTTSC-CCEEEGGGG--GGGTTTCCEEECTTSC-CCEE----ECCCCCTTCCEEECCSS-CCCE
T ss_pred ---------CCCCEEECCCCC-CCCcChHHH--hhhCCcccEEecCCCc-cccc----cccccCCCCCEEECCCC-CCCC
Confidence 344444444321 222111000 0012444444444432 2221 11135788999999998 7888
Q ss_pred cCcHHHHhhcccccEEeecccchhHHHhhcCcccccCCCCcccEeeccCCccc-cccCCCCccCCCCcceEeeccccccc
Q 001999 862 LFSKEMVAQLNELQDLQVEDCQMIEEIVEAGTVLAIGEFPKLKTLELIDLPKL-STICNSLLLPWPSLETIKIKACNALK 940 (984)
Q Consensus 862 l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~L~~L~L~~c~~L-~~i~~~~~~~l~sL~~L~i~~C~~L~ 940 (984)
+ ++ .+..+++|+.|++++|... +++..+..+++|+.|++++++-. ..++. ....++.|+.|.+..+..+.
T Consensus 206 ~-~~-~~~~l~~L~~L~Ls~N~l~------~lp~~l~~l~~L~~L~l~~N~l~c~~~~~-~~~~l~~L~~l~~~~~~~~~ 276 (487)
T 3oja_A 206 M-GP-EFQSAAGVTWISLRNNKLV------LIEKALRFSQNLEHFDLRGNGFHCGTLRD-FFSKNQRVQTVAKQTVKKLT 276 (487)
T ss_dssp E-CG-GGGGGTTCSEEECTTSCCC------EECTTCCCCTTCCEEECTTCCBCHHHHHH-HHTTCHHHHHHHHHHHHHHT
T ss_pred C-CH-hHcCCCCccEEEecCCcCc------ccchhhccCCCCCEEEcCCCCCcCcchHH-HHHhCCCCcEEecccccccc
Confidence 7 32 3778999999999998752 34556778899999999987644 23333 45667888888886544433
No 82
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.52 E-value=1.3e-14 Score=152.08 Aligned_cols=136 Identities=17% Similarity=0.227 Sum_probs=100.3
Q ss_pred CCCCCCCCCCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCC-CccCCc-chhcccccCeEecCCCcccccCch-
Q 001999 509 PSSTLPDMPNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTS-IRCLPP-SISRLINLNALFLRSCSLLFQLPK- 585 (984)
Q Consensus 509 ~~~~l~~~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~-i~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~- 585 (984)
.+..+|. -.++|+.|++++|.+..++...|.++++|++|++++|. ++.+|. .+..+++|++|++++|..++.+|.
T Consensus 22 ~l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~ 99 (239)
T 2xwt_C 22 DIQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD 99 (239)
T ss_dssp SCSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred CccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence 3555665 33478899999888888887668888899999999986 888765 678888999999987555676664
Q ss_pred hhhccCCCcEEEecCccccccchhhhccCCCC---eeecccccccCccccCCCCCCcccchhhhhcccccc-ceeee
Q 001999 586 EIRYLQKLEILDVRHTRIQCLPSEIGQLIKLK---CLRVSWVENVGNHTHAGAWPGEMISSNIISKLCLLE-ELIIE 658 (984)
Q Consensus 586 ~i~~L~~L~~L~l~~~~l~~lp~~~~~L~~L~---~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~~L~~L~-~L~l~ 658 (984)
.++++++|++|++++|.++.+|. ++.+++|+ +|+++ ++..+. .+|...+.++++|+ .|++.
T Consensus 100 ~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~-----~N~~l~------~i~~~~~~~l~~L~~~L~l~ 164 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEIT-----DNPYMT------SIPVNAFQGLCNETLTLKLY 164 (239)
T ss_dssp SEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEE-----SCTTCC------EECTTTTTTTBSSEEEEECC
T ss_pred HhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECC-----CCcchh------hcCcccccchhcceeEEEcC
Confidence 57888889999999888888886 77777777 88887 542333 35544455555565 55554
No 83
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.52 E-value=1.4e-14 Score=158.25 Aligned_cols=109 Identities=16% Similarity=0.119 Sum_probs=72.9
Q ss_pred CcccccceeeecccccccccC--cHHHHhhcccccEEeecccchhHHHhhcCc-ccccCCCCcccEeeccCCccccccCC
Q 001999 843 GSLNSLRTLRVKICHSIKTLF--SKEMVAQLNELQDLQVEDCQMIEEIVEAGT-VLAIGEFPKLKTLELIDLPKLSTICN 919 (984)
Q Consensus 843 ~~l~~L~~L~l~~c~~L~~l~--~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~-~~~~~~~~~L~~L~L~~c~~L~~i~~ 919 (984)
..+++|+.|++++| +++.+. +...+..+++|++|++++|..-. .. ......+++|++|+|+++ .++.++.
T Consensus 198 ~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-----~~~~~~~~~l~~L~~L~Ls~N-~l~~ip~ 270 (312)
T 1wwl_A 198 LKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHNSLRD-----AAGAPSCDWPSQLNSLNLSFT-GLKQVPK 270 (312)
T ss_dssp TSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTSCCCS-----SCCCSCCCCCTTCCEEECTTS-CCSSCCS
T ss_pred ccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCCcCCc-----ccchhhhhhcCCCCEEECCCC-ccChhhh
Confidence 35677777777777 666431 22344567888888888876421 11 123445678888888885 4777766
Q ss_pred CCccCCCCcceEeecccccccccCcCCcCCcCcceeechHHhhh
Q 001999 920 SLLLPWPSLETIKIKACNALKSFPSTFKNTTMLKVIKGDQAWFD 963 (984)
Q Consensus 920 ~~~~~l~sL~~L~i~~C~~L~~lp~~~~~l~~L~~l~~~~~~w~ 963 (984)
... ++|++|++++|+ ++.+|. +..+++|+.++...+.|.
T Consensus 271 -~~~--~~L~~L~Ls~N~-l~~~p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 271 -GLP--AKLSVLDLSYNR-LDRNPS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp -SCC--SEEEEEECCSSC-CCSCCC-TTTSCEEEEEECTTCTTT
T ss_pred -hcc--CCceEEECCCCC-CCCChh-HhhCCCCCEEeccCCCCC
Confidence 333 788888888865 777776 778888888887766554
No 84
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.51 E-value=9e-14 Score=148.46 Aligned_cols=172 Identities=23% Similarity=0.335 Sum_probs=133.7
Q ss_pred cCeEeeeccCCCCCCCCCCCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCCcc-hhcccccCeEecCCC
Q 001999 499 DTKKLSLFGFPSSTLPDMPNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLPPS-ISRLINLNALFLRSC 577 (984)
Q Consensus 499 ~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~c 577 (984)
..+.+.+.++.+..+|... .++|+.|++++|.+..++...|.++++|++|+|++|.++.+|.. +..+++|++|++++|
T Consensus 17 ~~~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNI-PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95 (270)
T ss_dssp TTTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred CCCEEEccCCCCCccCCCC-CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence 4567888888888877532 26899999999999999877789999999999999999998765 478999999999996
Q ss_pred cccccCch-hhhccCCCcEEEecCccccccchh-hhccCCCCeeecccccccCccccCCCCCCcccchhhhhccccccce
Q 001999 578 SLLFQLPK-EIRYLQKLEILDVRHTRIQCLPSE-IGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSNIISKLCLLEEL 655 (984)
Q Consensus 578 ~~l~~lp~-~i~~L~~L~~L~l~~~~l~~lp~~-~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~~L~~L~~L 655 (984)
. ++.+|. .+..+++|++|++++|.+..+|.. ++.+++|++|+++ ++... .+|...++.+++|+.|
T Consensus 96 ~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls-----~n~l~-------~~~~~~~~~l~~L~~L 162 (270)
T 2o6q_A 96 K-LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLG-----YNELQ-------SLPKGVFDKLTSLKEL 162 (270)
T ss_dssp C-CCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-----SSCCC-------CCCTTTTTTCTTCCEE
T ss_pred c-CCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECC-----CCcCC-------ccCHhHccCCccccee
Confidence 5 666665 468899999999999999987754 7899999999998 55433 3666667888899999
Q ss_pred eeeecCCchhHHhhhhhhhHHHhhccCCCceEEEecC
Q 001999 656 IIEVLDPSDRRWKQNVESIAGEIAALEQLTTLHFYFP 692 (984)
Q Consensus 656 ~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 692 (984)
++.+..... .....+..+++|+.|+++.+
T Consensus 163 ~L~~n~l~~--------~~~~~~~~l~~L~~L~L~~N 191 (270)
T 2o6q_A 163 RLYNNQLKR--------VPEGAFDKLTELKTLKLDNN 191 (270)
T ss_dssp ECCSSCCSC--------CCTTTTTTCTTCCEEECCSS
T ss_pred EecCCcCcE--------eChhHhccCCCcCEEECCCC
Confidence 887643321 11223566777777777644
No 85
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.50 E-value=2.9e-14 Score=157.75 Aligned_cols=124 Identities=21% Similarity=0.170 Sum_probs=82.9
Q ss_pred CccEEeccCCCCccCCcchhcc--cccCeEecCCCcccccCchhhhccCCCcEEEecCccccc--cchhhhccCCCCeee
Q 001999 545 HLQLLDLHDTSIRCLPPSISRL--INLNALFLRSCSLLFQLPKEIRYLQKLEILDVRHTRIQC--LPSEIGQLIKLKCLR 620 (984)
Q Consensus 545 ~Lr~L~L~~~~i~~lp~~i~~l--~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~~~l~~--lp~~~~~L~~L~~L~ 620 (984)
.++.++++++.+. |..++.+ .++++|++++|. +...+..+.++++|++|++++|.+.. +|..+..+++|++|+
T Consensus 48 ~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~-l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 48 LWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSF-MDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp TSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCE-ECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred hheeeccccccCC--HHHHHhhhhccceEEEcCCcc-ccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 4788888888766 4566766 788888888854 55555557778888888888887763 777788888888888
Q ss_pred cccccccCccccCCCCCCcccchhhhhccccccceeeeec-CCchhHHhhhhhhhHHHhhccCCCceEEEe
Q 001999 621 VSWVENVGNHTHAGAWPGEMISSNIISKLCLLEELIIEVL-DPSDRRWKQNVESIAGEIAALEQLTTLHFY 690 (984)
Q Consensus 621 l~~~~~~~~~~l~~~~~~~~ip~~~l~~L~~L~~L~l~~~-~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 690 (984)
++ ++.... ..+ ..++++++|++|++.++ ... .......+..+++|+.|+++
T Consensus 125 L~-----~~~l~~------~~~-~~l~~~~~L~~L~L~~~~~l~-------~~~l~~~~~~~~~L~~L~l~ 176 (336)
T 2ast_B 125 LE-----GLRLSD------PIV-NTLAKNSNLVRLNLSGCSGFS-------EFALQTLLSSCSRLDELNLS 176 (336)
T ss_dssp CT-----TCBCCH------HHH-HHHTTCTTCSEEECTTCBSCC-------HHHHHHHHHHCTTCCEEECC
T ss_pred Cc-----CcccCH------HHH-HHHhcCCCCCEEECCCCCCCC-------HHHHHHHHhcCCCCCEEcCC
Confidence 88 443221 223 23666777777777654 222 12234445666677776665
No 86
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.49 E-value=1.1e-13 Score=147.88 Aligned_cols=179 Identities=20% Similarity=0.293 Sum_probs=146.9
Q ss_pred ChhhhccCeEeeeccCCCCCCCCCCCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCCc-chhcccccCe
Q 001999 493 SEEEWKDTKKLSLFGFPSSTLPDMPNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLPP-SISRLINLNA 571 (984)
Q Consensus 493 ~~~~~~~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~L~~ 571 (984)
.....+.++.+.+.++.+..++.+..+++|+.|++++|.+..++ . +..+++|++|++++|.++.+|. .++.+++|++
T Consensus 36 ~~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~-~-l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 36 TQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS-A-LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp CHHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG-G-GTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred ccccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch-h-hcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence 45567889999999999998888889999999999999998875 3 8899999999999999998865 4689999999
Q ss_pred EecCCCcccccCch-hhhccCCCcEEEecCccccccchh-hhccCCCCeeecccccccCccccCCCCCCcccchhhhhcc
Q 001999 572 LFLRSCSLLFQLPK-EIRYLQKLEILDVRHTRIQCLPSE-IGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSNIISKL 649 (984)
Q Consensus 572 L~L~~c~~l~~lp~-~i~~L~~L~~L~l~~~~l~~lp~~-~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~~L 649 (984)
|++++|. ++.+|. .++++++|++|++++|.+..+|.. ++.+++|++|+++ ++... .++...++.+
T Consensus 114 L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~-----~n~l~-------~~~~~~~~~l 180 (272)
T 3rfs_A 114 LVLVENQ-LQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLS-----YNQLQ-------SLPEGVFDKL 180 (272)
T ss_dssp EECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-----SSCCC-------CCCTTTTTTC
T ss_pred EECCCCc-CCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECC-----CCCcC-------ccCHHHhcCC
Confidence 9999975 566655 478999999999999999988766 6899999999998 55433 3565667899
Q ss_pred ccccceeeeecCCchhHHhhhhhhhHHHhhccCCCceEEEecCCc
Q 001999 650 CLLEELIIEVLDPSDRRWKQNVESIAGEIAALEQLTTLHFYFPTI 694 (984)
Q Consensus 650 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 694 (984)
++|+.|++.+.... ......+..+++|+.|+++.+..
T Consensus 181 ~~L~~L~L~~N~l~--------~~~~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 181 TQLKDLRLYQNQLK--------SVPDGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp TTCCEEECCSSCCS--------CCCTTTTTTCTTCCEEECCSSCB
T ss_pred ccCCEEECCCCcCC--------ccCHHHHhCCcCCCEEEccCCCc
Confidence 99999999875443 12223467889999999986643
No 87
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.49 E-value=1.2e-13 Score=148.15 Aligned_cols=103 Identities=25% Similarity=0.234 Sum_probs=72.3
Q ss_pred CceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCCc-chhcccccCeEecCCCcccccCchhhhccCCCcEEEe
Q 001999 520 CEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLPP-SISRLINLNALFLRSCSLLFQLPKEIRYLQKLEILDV 598 (984)
Q Consensus 520 ~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l 598 (984)
++|++|++++|.+..++...|.++++|++|++++|.++.++. .+..+++|++|++++|......|..++++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 467777777777777766557777777888887777776643 5777777777777775432333356777777777777
Q ss_pred cCccccccch-hhhccCCCCeeecc
Q 001999 599 RHTRIQCLPS-EIGQLIKLKCLRVS 622 (984)
Q Consensus 599 ~~~~l~~lp~-~~~~L~~L~~L~l~ 622 (984)
++|.+..++. .++.+++|++|+++
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~ 132 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVA 132 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECC
T ss_pred CCCCccccCchhcccCCCCCEEECc
Confidence 7777776654 46677777777776
No 88
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.48 E-value=1.6e-13 Score=152.58 Aligned_cols=127 Identities=13% Similarity=0.060 Sum_probs=75.5
Q ss_pred ccCeeEEcccCCceEEecCCCCCcccCCCcceeecccccccccccccccccCcccccceeeecccccccccCcHHHHhhc
Q 001999 792 RLQACVIEDCNEMTSIIDGNHRGVVPFQGLNNLHIKNLPKLMHIWVGPIASGSLNSLRTLRVKICHSIKTLFSKEMVAQL 871 (984)
Q Consensus 792 ~L~~L~l~~~~~l~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~l~~l 871 (984)
++..|++.++..+..++....... ...|+.|.++++ .++.+.... ...++|++|.+.++..++.+ +...+..+
T Consensus 129 ~l~~l~l~~~~~i~~l~~~~f~~~--~~~l~~L~L~~N-~i~~i~~~~---f~~~~L~~l~l~~~n~l~~i-~~~~f~~l 201 (350)
T 4ay9_X 129 QKVLLDIQDNINIHTIERNSFVGL--SFESVILWLNKN-GIQEIHNSA---FNGTQLDELNLSDNNNLEEL-PNDVFHGA 201 (350)
T ss_dssp SCEEEEEESCTTCCEECTTSSTTS--BSSCEEEECCSS-CCCEECTTS---STTEEEEEEECTTCTTCCCC-CTTTTTTE
T ss_pred hhhhhhhccccccccccccchhhc--chhhhhhccccc-cccCCChhh---ccccchhHHhhccCCcccCC-CHHHhccC
Confidence 344444444444444443322111 134555555542 233332211 23467778888777677777 44667788
Q ss_pred ccccEEeecccchhHHHhhcCcccccCCCCcccEeeccCCccccccCCCCccCCCCcceEeecc
Q 001999 872 NELQDLQVEDCQMIEEIVEAGTVLAIGEFPKLKTLELIDLPKLSTICNSLLLPWPSLETIKIKA 935 (984)
Q Consensus 872 ~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~L~~L~L~~c~~L~~i~~~~~~~l~sL~~L~i~~ 935 (984)
++|++|++++|.. +. ++ ...|.+|+.|.+.++++++.+|. +..+++|+.+++.+
T Consensus 202 ~~L~~LdLs~N~l-~~-----lp--~~~~~~L~~L~~l~~~~l~~lP~--l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 202 SGPVILDISRTRI-HS-----LP--SYGLENLKKLRARSTYNLKKLPT--LEKLVALMEASLTY 255 (350)
T ss_dssp ECCSEEECTTSCC-CC-----CC--SSSCTTCCEEECTTCTTCCCCCC--TTTCCSCCEEECSC
T ss_pred cccchhhcCCCCc-Cc-----cC--hhhhccchHhhhccCCCcCcCCC--chhCcChhhCcCCC
Confidence 8888888887753 22 22 23577788888888888888875 66788888888864
No 89
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.47 E-value=2e-13 Score=143.95 Aligned_cols=176 Identities=23% Similarity=0.312 Sum_probs=134.2
Q ss_pred cCeEeeeccCCCCCCCCCCCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCCc-chhcccccCeEecCCC
Q 001999 499 DTKKLSLFGFPSSTLPDMPNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLPP-SISRLINLNALFLRSC 577 (984)
Q Consensus 499 ~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~c 577 (984)
..+++.+.++.+..+|... .++|+.|++++|.+..++...|.++++|++|+|++|.++.++. .+..+.+|++|+|++|
T Consensus 15 ~~~~l~~~~~~l~~~p~~~-~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGI-PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp GGTEEECTTCCCSSCCSCC-CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CCeEEecCCCCccccCCCC-CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence 4556788888888777532 2688999999999888887778889999999999998887744 5788999999999986
Q ss_pred cccccCc-hhhhccCCCcEEEecCccccccchh-hhccCCCCeeecccccccCccccCCCCCCcccchhhhhccccccce
Q 001999 578 SLLFQLP-KEIRYLQKLEILDVRHTRIQCLPSE-IGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSNIISKLCLLEEL 655 (984)
Q Consensus 578 ~~l~~lp-~~i~~L~~L~~L~l~~~~l~~lp~~-~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~~L~~L~~L 655 (984)
. ++.+| ..++.+++|++|++++|+++.+|.. +..+++|++|+++ ++.. . .+|...++++++|+.|
T Consensus 94 ~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls-----~N~l-~------~~~~~~~~~l~~L~~L 160 (251)
T 3m19_A 94 Q-LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLN-----TNQL-Q------SIPAGAFDKLTNLQTL 160 (251)
T ss_dssp C-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-----SSCC-C------CCCTTTTTTCTTCCEE
T ss_pred c-ccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECc-----CCcC-C------ccCHHHcCcCcCCCEE
Confidence 5 55655 4578889999999999998888776 5788999999998 5543 3 3666668888999999
Q ss_pred eeeecCCchhHHhhhhhhhHHHhhccCCCceEEEecCCcch
Q 001999 656 IIEVLDPSDRRWKQNVESIAGEIAALEQLTTLHFYFPTIKC 696 (984)
Q Consensus 656 ~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 696 (984)
++.+.... ......+..+++|+.|+++.+...+
T Consensus 161 ~L~~N~l~--------~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 161 SLSTNQLQ--------SVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp ECCSSCCS--------CCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred ECCCCcCC--------ccCHHHHhCCCCCCEEEeeCCceeC
Confidence 88864432 1122356778889999998776543
No 90
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.47 E-value=1.4e-13 Score=148.35 Aligned_cols=176 Identities=22% Similarity=0.206 Sum_probs=137.2
Q ss_pred hccCeEeeeccCCCCCCCCCCCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCCcchhcccccCeEecCC
Q 001999 497 WKDTKKLSLFGFPSSTLPDMPNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLPPSISRLINLNALFLRS 576 (984)
Q Consensus 497 ~~~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~ 576 (984)
..+++.+.+.++.+..+|... .++++.|++++|.+..++...|.++++|++|+|++|.++.++.. +.+++|++|++++
T Consensus 9 l~~l~~l~~~~~~l~~ip~~~-~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~ 86 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTALPPDL-PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSH 86 (290)
T ss_dssp STTCCEEECTTSCCSSCCSCC-CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCS
T ss_pred cCCccEEECCCCCCCcCCCCC-CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCC
Confidence 456788888888888877532 37899999999999888777789999999999999999888664 7889999999998
Q ss_pred CcccccCchhhhccCCCcEEEecCccccccch-hhhccCCCCeeecccccccCccccCCCCCCcccchhhhhccccccce
Q 001999 577 CSLLFQLPKEIRYLQKLEILDVRHTRIQCLPS-EIGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSNIISKLCLLEEL 655 (984)
Q Consensus 577 c~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~-~~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~~L~~L~~L 655 (984)
| .++.+|..+..+++|++|++++|+++.+|. .+..+++|++|+++ ++... .+|.+.+..+++|+.|
T Consensus 87 N-~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~-----~N~l~-------~~~~~~~~~l~~L~~L 153 (290)
T 1p9a_G 87 N-QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK-----GNELK-------TLPPGLLTPTPKLEKL 153 (290)
T ss_dssp S-CCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECT-----TSCCC-------CCCTTTTTTCTTCCEE
T ss_pred C-cCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECC-----CCCCC-------ccChhhcccccCCCEE
Confidence 6 578889888999999999999999998874 58899999999998 55433 3666667888899999
Q ss_pred eeeecCCchhHHhhhhhhhHHHhhccCCCceEEEecCCcc
Q 001999 656 IIEVLDPSDRRWKQNVESIAGEIAALEQLTTLHFYFPTIK 695 (984)
Q Consensus 656 ~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 695 (984)
++.+..... .....+..+++|+.|+++.+...
T Consensus 154 ~L~~N~l~~--------l~~~~~~~l~~L~~L~L~~N~l~ 185 (290)
T 1p9a_G 154 SLANNNLTE--------LPAGLLNGLENLDTLLLQENSLY 185 (290)
T ss_dssp ECTTSCCSC--------CCTTTTTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCc--------cCHHHhcCcCCCCEEECCCCcCC
Confidence 887643321 11123466788888888765443
No 91
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.46 E-value=1.6e-13 Score=147.22 Aligned_cols=143 Identities=26% Similarity=0.284 Sum_probs=120.0
Q ss_pred ccCeEeeeccCCCCCCC--CCCCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCC-cchhcccccCeEec
Q 001999 498 KDTKKLSLFGFPSSTLP--DMPNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLP-PSISRLINLNALFL 574 (984)
Q Consensus 498 ~~~r~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~~L~~L~L 574 (984)
..+++|.+++|.+..++ .+..+++|++|++++|.+..++...|.++++|++|+|++|.++.++ ..+..+.+|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 57999999999998866 4688999999999999999988877999999999999999999875 67899999999999
Q ss_pred CCCcccccCch-hhhccCCCcEEEecCccccc--cchhhhccCCCCeeecccccccCccccCCCCCCcccchhhhhcccc
Q 001999 575 RSCSLLFQLPK-EIRYLQKLEILDVRHTRIQC--LPSEIGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSNIISKLCL 651 (984)
Q Consensus 575 ~~c~~l~~lp~-~i~~L~~L~~L~l~~~~l~~--lp~~~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~~L~~ 651 (984)
++|. +..++. .++++++|++|++++|.+.. +|..++.+++|++|+++ ++... .++...+..+++
T Consensus 108 ~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls-----~N~l~-------~~~~~~~~~l~~ 174 (276)
T 2z62_A 108 VETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS-----SNKIQ-------SIYCTDLRVLHQ 174 (276)
T ss_dssp TTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECC-----SSCCC-------EECGGGGHHHHT
T ss_pred CCCC-ccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECC-----CCCCC-------cCCHHHhhhhhh
Confidence 9975 555554 68999999999999999986 78899999999999998 55433 244444555555
Q ss_pred cc
Q 001999 652 LE 653 (984)
Q Consensus 652 L~ 653 (984)
|+
T Consensus 175 L~ 176 (276)
T 2z62_A 175 MP 176 (276)
T ss_dssp CT
T ss_pred cc
Confidence 55
No 92
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.45 E-value=4.7e-13 Score=144.36 Aligned_cols=174 Identities=18% Similarity=0.286 Sum_probs=147.6
Q ss_pred ChhhhccCeEeeeccCCCCCCCCCCCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCCcchhcccccCeE
Q 001999 493 SEEEWKDTKKLSLFGFPSSTLPDMPNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLPPSISRLINLNAL 572 (984)
Q Consensus 493 ~~~~~~~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L 572 (984)
.....++++.+.+.++.+..++.+..+++|++|++++|.+..++. +.++++|++|++++|.++.+|. ++.+++|++|
T Consensus 41 ~~~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L 117 (291)
T 1h6t_A 41 TQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSL 117 (291)
T ss_dssp CHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEE
T ss_pred chhhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCChh-hccCCCCCEE
Confidence 445678999999999999999888899999999999999999887 8999999999999999998765 9999999999
Q ss_pred ecCCCcccccCchhhhccCCCcEEEecCccccccchhhhccCCCCeeecccccccCccccCCCCCCcccchhhhhccccc
Q 001999 573 FLRSCSLLFQLPKEIRYLQKLEILDVRHTRIQCLPSEIGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSNIISKLCLL 652 (984)
Q Consensus 573 ~L~~c~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~~L~~L 652 (984)
++++|. ++.+ ..++.+++|++|++++|.+..+ ..++.+++|++|+++ +|.... ++. +..+++|
T Consensus 118 ~L~~n~-i~~~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~-----~N~l~~-------~~~--l~~l~~L 180 (291)
T 1h6t_A 118 SLEHNG-ISDI-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLE-----DNQISD-------IVP--LAGLTKL 180 (291)
T ss_dssp ECTTSC-CCCC-GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECC-----SSCCCC-------CGG--GTTCTTC
T ss_pred ECCCCc-CCCC-hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEcc-----CCcccc-------chh--hcCCCcc
Confidence 999974 6776 4689999999999999999988 578999999999998 554432 443 8899999
Q ss_pred cceeeeecCCchhHHhhhhhhhHHHhhccCCCceEEEecCCcch
Q 001999 653 EELIIEVLDPSDRRWKQNVESIAGEIAALEQLTTLHFYFPTIKC 696 (984)
Q Consensus 653 ~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 696 (984)
+.|++.+..... . ..+..+++|+.|+++.+....
T Consensus 181 ~~L~L~~N~i~~---------l-~~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 181 QNLYLSKNHISD---------L-RALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CEEECCSSCCCB---------C-GGGTTCTTCSEEEEEEEEEEC
T ss_pred CEEECCCCcCCC---------C-hhhccCCCCCEEECcCCcccC
Confidence 999998754431 1 347889999999999765443
No 93
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.44 E-value=5.8e-13 Score=145.01 Aligned_cols=174 Identities=22% Similarity=0.290 Sum_probs=148.0
Q ss_pred ChhhhccCeEeeeccCCCCCCCCCCCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCCcchhcccccCeE
Q 001999 493 SEEEWKDTKKLSLFGFPSSTLPDMPNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLPPSISRLINLNAL 572 (984)
Q Consensus 493 ~~~~~~~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L 572 (984)
.....++++.|.+++|.+..++.+..+++|+.|++++|.+..++. +..+++|++|++++|.++.+|. ++.+++|++|
T Consensus 58 ~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L 134 (308)
T 1h6u_A 58 GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVL 134 (308)
T ss_dssp TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCGG--GTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEE
T ss_pred hhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCchh--hcCCCCCCEEECCCCCCCCchh-hcCCCCCCEE
Confidence 345567899999999999998888999999999999999998863 8999999999999999999875 9999999999
Q ss_pred ecCCCcccccCchhhhccCCCcEEEecCccccccchhhhccCCCCeeecccccccCccccCCCCCCcccchhhhhccccc
Q 001999 573 FLRSCSLLFQLPKEIRYLQKLEILDVRHTRIQCLPSEIGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSNIISKLCLL 652 (984)
Q Consensus 573 ~L~~c~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~~L~~L 652 (984)
++++|. ++.+|. ++.+++|++|++++|.+..+|. +..+++|++|+++ ++... .++. +..+++|
T Consensus 135 ~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~-----~n~l~-------~~~~--l~~l~~L 197 (308)
T 1h6u_A 135 YLDLNQ-ITNISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKAD-----DNKIS-------DISP--LASLPNL 197 (308)
T ss_dssp ECCSSC-CCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECC-----SSCCC-------CCGG--GGGCTTC
T ss_pred ECCCCc-cCcCcc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECC-----CCccC-------cChh--hcCCCCC
Confidence 999974 777776 9999999999999999998887 8999999999998 55443 2442 7899999
Q ss_pred cceeeeecCCchhHHhhhhhhhHHHhhccCCCceEEEecCCcch
Q 001999 653 EELIIEVLDPSDRRWKQNVESIAGEIAALEQLTTLHFYFPTIKC 696 (984)
Q Consensus 653 ~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 696 (984)
+.|++.+..... .. .+..+++|+.|+++.+....
T Consensus 198 ~~L~L~~N~l~~---------~~-~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 198 IEVHLKNNQISD---------VS-PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CEEECTTSCCCB---------CG-GGTTCTTCCEEEEEEEEEEC
T ss_pred CEEEccCCccCc---------cc-cccCCCCCCEEEccCCeeec
Confidence 999998755432 11 37889999999999776544
No 94
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.44 E-value=7.5e-14 Score=157.65 Aligned_cols=94 Identities=12% Similarity=0.069 Sum_probs=59.7
Q ss_pred cCcccCCCcchHhhcCCCccEEeccCCCCcc-----CCcchhcccccCeEecCCCc--ccc-cCchhh-------hccCC
Q 001999 528 EGRRLEKLPMSFFEYMCHLQLLDLHDTSIRC-----LPPSISRLINLNALFLRSCS--LLF-QLPKEI-------RYLQK 592 (984)
Q Consensus 528 ~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~-----lp~~i~~l~~L~~L~L~~c~--~l~-~lp~~i-------~~L~~ 592 (984)
....+..++.. +..+++|++|+|++|.+.. ++..+..+++|++|+|++|. .+. .+|..+ .++++
T Consensus 17 ~~~~~~~l~~~-l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~ 95 (386)
T 2ca6_A 17 TTEDEKSVFAV-LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPK 95 (386)
T ss_dssp CSHHHHTTSHH-HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTT
T ss_pred CHHHHHHHHHH-HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCc
Confidence 33344455554 6667777777777776663 33345567777777777752 111 334433 56777
Q ss_pred CcEEEecCccccc-----cchhhhccCCCCeeecc
Q 001999 593 LEILDVRHTRIQC-----LPSEIGQLIKLKCLRVS 622 (984)
Q Consensus 593 L~~L~l~~~~l~~-----lp~~~~~L~~L~~L~l~ 622 (984)
|++|++++|.+.. +|..+..+++|++|+++
T Consensus 96 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~ 130 (386)
T 2ca6_A 96 LHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLH 130 (386)
T ss_dssp CCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECC
T ss_pred ccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECc
Confidence 7777777777664 66667777777777777
No 95
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.44 E-value=6.6e-13 Score=134.30 Aligned_cols=150 Identities=17% Similarity=0.178 Sum_probs=122.8
Q ss_pred ChhhhccCeEeeeccCCCCCCCCCCCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCcc-CCcchhcccccCe
Q 001999 493 SEEEWKDTKKLSLFGFPSSTLPDMPNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRC-LPPSISRLINLNA 571 (984)
Q Consensus 493 ~~~~~~~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~-lp~~i~~l~~L~~ 571 (984)
+....++++.+.+.+|.+..++.+..+++|++|++++|.+..++. +..+++|++|++++|.++. .|..++.+++|++
T Consensus 39 ~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 39 TEAQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp BHHHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGG--GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred ChhhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcchh--hhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 345677899999999999888878888999999999988777653 7889999999999999886 5778899999999
Q ss_pred EecCCCcccccCchhhhccCCCcEEEecCcc-ccccchhhhccCCCCeeecccccccCccccCCCCCCcccchhhhhccc
Q 001999 572 LFLRSCSLLFQLPKEIRYLQKLEILDVRHTR-IQCLPSEIGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSNIISKLC 650 (984)
Q Consensus 572 L~L~~c~~l~~lp~~i~~L~~L~~L~l~~~~-l~~lp~~~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~~L~ 650 (984)
|++++|......|..++++++|++|++++|. +..+| .+..+++|++|+++ +|... .++ .+..++
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~-----~n~i~-------~~~--~l~~l~ 181 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQ-----FDGVH-------DYR--GIEDFP 181 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECT-----TBCCC-------CCT--TGGGCS
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECC-----CCCCc-------ChH--HhccCC
Confidence 9999976544577889999999999999997 88887 68899999999998 55432 233 377788
Q ss_pred cccceeeee
Q 001999 651 LLEELIIEV 659 (984)
Q Consensus 651 ~L~~L~l~~ 659 (984)
+|+.|++.+
T Consensus 182 ~L~~L~l~~ 190 (197)
T 4ezg_A 182 KLNQLYAFS 190 (197)
T ss_dssp SCCEEEECB
T ss_pred CCCEEEeeC
Confidence 888888875
No 96
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.42 E-value=3e-13 Score=121.52 Aligned_cols=81 Identities=20% Similarity=0.290 Sum_probs=70.5
Q ss_pred hhhhhhhhchhhhHHHHhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCchhHHHHHHHHHHHHHHHH
Q 001999 12 SVLTPAVEGGSGIFHYLKLNCGYVKHLKRNFVELEKELTFLCDCETEVNEELNSNKTKKKMTRGCKLWLDSVKEVRDEFE 91 (984)
Q Consensus 12 ~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~a~~~~~~~~~v~~wl~~l~~~~~d~e 91 (984)
+++++++++|. +.+.+++.++.++++++++|+++|+.|+++|.|++.+ .....++.|+.|+++||+++||+|
T Consensus 1 a~v~~ll~KL~---~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~-----~~~~~d~~vk~W~~~vrdlaYD~E 72 (115)
T 3qfl_A 1 AAISNLIPKLG---ELLTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEV-----PREQLDSQDKLWADEVRELSYVIE 72 (115)
T ss_dssp CTTCSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-----CGGGCCHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHH---HHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHh-----ccccCCHHHHHHHHHHHHHHHHHH
Confidence 36778888876 7789999999999999999999999999999997522 013468899999999999999999
Q ss_pred HHHHhhhhh
Q 001999 92 ILRSQYQQT 100 (984)
Q Consensus 92 d~ld~~~~~ 100 (984)
|++|+|.++
T Consensus 73 D~iD~f~~~ 81 (115)
T 3qfl_A 73 DVVDKFLVQ 81 (115)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999887
No 97
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.41 E-value=1.3e-12 Score=139.67 Aligned_cols=155 Identities=25% Similarity=0.381 Sum_probs=134.3
Q ss_pred ChhhhccCeEeeeccCCCCCCCCCCCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCCcc-hhcccccCe
Q 001999 493 SEEEWKDTKKLSLFGFPSSTLPDMPNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLPPS-ISRLINLNA 571 (984)
Q Consensus 493 ~~~~~~~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~-i~~l~~L~~ 571 (984)
.....++++.|.+.+|.+..++.+..+++|++|++++|.+..++...|.++++|++|++++|.++.+|.. ++.+++|++
T Consensus 58 ~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 137 (272)
T 3rfs_A 58 GIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTY 137 (272)
T ss_dssp TGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred ccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCE
Confidence 3455678999999999999988889999999999999999999988789999999999999999988654 789999999
Q ss_pred EecCCCcccccCchh-hhccCCCcEEEecCccccccchh-hhccCCCCeeecccccccCccccCCCCCCcccchhhhhcc
Q 001999 572 LFLRSCSLLFQLPKE-IRYLQKLEILDVRHTRIQCLPSE-IGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSNIISKL 649 (984)
Q Consensus 572 L~L~~c~~l~~lp~~-i~~L~~L~~L~l~~~~l~~lp~~-~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~~L 649 (984)
|++++|. ++.+|.. ++++++|++|++++|++..+|.. ++.+++|++|+++ ++... .++...++++
T Consensus 138 L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~-----~N~l~-------~~~~~~~~~l 204 (272)
T 3rfs_A 138 LNLAHNQ-LQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLY-----QNQLK-------SVPDGVFDRL 204 (272)
T ss_dssp EECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-----SSCCS-------CCCTTTTTTC
T ss_pred EECCCCc-cCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECC-----CCcCC-------ccCHHHHhCC
Confidence 9999974 6676654 68999999999999999988766 6899999999998 55443 3565668999
Q ss_pred ccccceeeeec
Q 001999 650 CLLEELIIEVL 660 (984)
Q Consensus 650 ~~L~~L~l~~~ 660 (984)
++|+.|++.+.
T Consensus 205 ~~L~~L~l~~N 215 (272)
T 3rfs_A 205 TSLQYIWLHDN 215 (272)
T ss_dssp TTCCEEECCSS
T ss_pred cCCCEEEccCC
Confidence 99999999863
No 98
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.40 E-value=5.6e-13 Score=143.62 Aligned_cols=174 Identities=21% Similarity=0.211 Sum_probs=146.2
Q ss_pred ccCeEeeeccCCCCCCC--CCCCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCCcchhcccccCeEecC
Q 001999 498 KDTKKLSLFGFPSSTLP--DMPNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLPPSISRLINLNALFLR 575 (984)
Q Consensus 498 ~~~r~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~ 575 (984)
+.++.|.+++|.+..++ .+..+++|+.|++++|.+..++.. ..+++|++|++++|.++.+|..+..+++|++|+++
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~ 108 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS 108 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECC
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECC
Confidence 67999999999988754 368899999999999999988763 78999999999999999999999999999999999
Q ss_pred CCcccccCc-hhhhccCCCcEEEecCccccccchh-hhccCCCCeeecccccccCccccCCCCCCcccchhhhhcccccc
Q 001999 576 SCSLLFQLP-KEIRYLQKLEILDVRHTRIQCLPSE-IGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSNIISKLCLLE 653 (984)
Q Consensus 576 ~c~~l~~lp-~~i~~L~~L~~L~l~~~~l~~lp~~-~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~~L~~L~ 653 (984)
+|. ++.+| ..++++++|++|++++|++..+|.. +..+++|+.|+++ ++.. . .+|.+.+.++++|+
T Consensus 109 ~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~-----~N~l-~------~l~~~~~~~l~~L~ 175 (290)
T 1p9a_G 109 FNR-LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA-----NNNL-T------ELPAGLLNGLENLD 175 (290)
T ss_dssp SSC-CCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT-----TSCC-S------CCCTTTTTTCTTCC
T ss_pred CCc-CcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECC-----CCcC-C------ccCHHHhcCcCCCC
Confidence 965 66766 5689999999999999999988876 5789999999998 5543 3 47777789999999
Q ss_pred ceeeeecCCchhHHhhhhhhhHHHhhccCCCceEEEecCCcc
Q 001999 654 ELIIEVLDPSDRRWKQNVESIAGEIAALEQLTTLHFYFPTIK 695 (984)
Q Consensus 654 ~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 695 (984)
.|++.+.... .++..+..+.+|+.|.++.+...
T Consensus 176 ~L~L~~N~l~---------~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 176 TLLLQENSLY---------TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp EEECCSSCCC---------CCCTTTTTTCCCSEEECCSCCBC
T ss_pred EEECCCCcCC---------ccChhhcccccCCeEEeCCCCcc
Confidence 9999864332 34455667789999999877543
No 99
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.39 E-value=2e-12 Score=136.33 Aligned_cols=152 Identities=24% Similarity=0.354 Sum_probs=131.7
Q ss_pred ccCeEeeeccCCCCCCCC--CCCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCCc-chhcccccCeEec
Q 001999 498 KDTKKLSLFGFPSSTLPD--MPNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLPP-SISRLINLNALFL 574 (984)
Q Consensus 498 ~~~r~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~L~~L~L 574 (984)
..++.|.+.+|.+..++. +..+++|++|++++|.+..++...|.++++|++|+|++|.++.+|. .+..+++|++|+|
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 114 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence 579999999999988654 6889999999999999999988878999999999999999998864 5789999999999
Q ss_pred CCCcccccCchh-hhccCCCcEEEecCccccccch-hhhccCCCCeeecccccccCccccCCCCCCcccchhhhhccccc
Q 001999 575 RSCSLLFQLPKE-IRYLQKLEILDVRHTRIQCLPS-EIGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSNIISKLCLL 652 (984)
Q Consensus 575 ~~c~~l~~lp~~-i~~L~~L~~L~l~~~~l~~lp~-~~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~~L~~L 652 (984)
++| .++.+|.. ++++++|++|++++|++..+|. .++.+++|++|+++ ++... .++...+.++++|
T Consensus 115 ~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~-----~N~l~-------~~~~~~~~~l~~L 181 (251)
T 3m19_A 115 GGN-QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLS-----TNQLQ-------SVPHGAFDRLGKL 181 (251)
T ss_dssp CSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-----SSCCS-------CCCTTTTTTCTTC
T ss_pred CCC-cCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECC-----CCcCC-------ccCHHHHhCCCCC
Confidence 996 47777765 6899999999999999999887 58899999999998 55443 3666668999999
Q ss_pred cceeeeecCC
Q 001999 653 EELIIEVLDP 662 (984)
Q Consensus 653 ~~L~l~~~~~ 662 (984)
+.|++.+...
T Consensus 182 ~~L~l~~N~~ 191 (251)
T 3m19_A 182 QTITLFGNQF 191 (251)
T ss_dssp CEEECCSCCB
T ss_pred CEEEeeCCce
Confidence 9999986443
No 100
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.39 E-value=6.2e-13 Score=147.70 Aligned_cols=119 Identities=14% Similarity=0.179 Sum_probs=57.0
Q ss_pred eeeccCCCCCCCCCCCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCc-cCCc-chhcccccCeEecCCCccc
Q 001999 503 LSLFGFPSSTLPDMPNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIR-CLPP-SISRLINLNALFLRSCSLL 580 (984)
Q Consensus 503 l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~-~lp~-~i~~l~~L~~L~L~~c~~l 580 (984)
+.-+++.++.+|... .++++.|++++|.++.+|...|.++++|++|+|++|.+. .+|. .+.++.+|+.+...++..+
T Consensus 14 v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l 92 (350)
T 4ay9_X 14 FLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNL 92 (350)
T ss_dssp EEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTC
T ss_pred EEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcc
Confidence 344444444444311 235555555555555555554555555666666555543 2332 3445555554333333334
Q ss_pred ccCc-hhhhccCCCcEEEecCccccccchh-hhccCCCCeeecc
Q 001999 581 FQLP-KEIRYLQKLEILDVRHTRIQCLPSE-IGQLIKLKCLRVS 622 (984)
Q Consensus 581 ~~lp-~~i~~L~~L~~L~l~~~~l~~lp~~-~~~L~~L~~L~l~ 622 (984)
..+| ..+..+++|++|++++|++..+|.. +....++..|++.
T Consensus 93 ~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~ 136 (350)
T 4ay9_X 93 LYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQ 136 (350)
T ss_dssp CEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEE
T ss_pred cccCchhhhhccccccccccccccccCCchhhcccchhhhhhhc
Confidence 4442 3345555555555555555544432 2233344444443
No 101
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.39 E-value=2.7e-13 Score=141.93 Aligned_cols=173 Identities=14% Similarity=0.179 Sum_probs=137.9
Q ss_pred hccCeEeeeccCCCCCCCC--CCCcCceeEEEecCcc-cCCCcchHhhcCCCccEEeccC-CCCccCC-cchhcccccCe
Q 001999 497 WKDTKKLSLFGFPSSTLPD--MPNCCEILTLIVEGRR-LEKLPMSFFEYMCHLQLLDLHD-TSIRCLP-PSISRLINLNA 571 (984)
Q Consensus 497 ~~~~r~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~-l~~l~~~~~~~l~~Lr~L~L~~-~~i~~lp-~~i~~l~~L~~ 571 (984)
...++.|.+.+|.+..++. +..+++|++|++++|. +..++...|.++++|++|++++ |.++.+| ..+..+++|++
T Consensus 30 ~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 30 PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 3589999999999998765 6789999999999997 9999887799999999999998 8999886 46889999999
Q ss_pred EecCCCcccccCchhhhccCCCc---EEEecCc-cccccchh-hhccCCCC-eeecccccccCccccCCCCCCcccchhh
Q 001999 572 LFLRSCSLLFQLPKEIRYLQKLE---ILDVRHT-RIQCLPSE-IGQLIKLK-CLRVSWVENVGNHTHAGAWPGEMISSNI 645 (984)
Q Consensus 572 L~L~~c~~l~~lp~~i~~L~~L~---~L~l~~~-~l~~lp~~-~~~L~~L~-~L~l~~~~~~~~~~l~~~~~~~~ip~~~ 645 (984)
|++++|. ++.+|. ++.+++|+ +|++++| .+..+|.. +..+++|+ +|+++ ++... .+|...
T Consensus 110 L~l~~n~-l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~-----~n~l~-------~i~~~~ 175 (239)
T 2xwt_C 110 LGIFNTG-LKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLY-----NNGFT-------SVQGYA 175 (239)
T ss_dssp EEEEEEC-CCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECC-----SCCCC-------EECTTT
T ss_pred EeCCCCC-Cccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcC-----CCCCc-------ccCHhh
Confidence 9999964 777887 88888888 9999999 99988875 88999999 99998 55432 466554
Q ss_pred hhccccccceeeeecC-CchhHHhhhhhhhHHHhhcc-CCCceEEEecC
Q 001999 646 ISKLCLLEELIIEVLD-PSDRRWKQNVESIAGEIAAL-EQLTTLHFYFP 692 (984)
Q Consensus 646 l~~L~~L~~L~l~~~~-~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~ 692 (984)
+.. ++|+.|++.+.. .. ......+..+ ++|+.|+++.+
T Consensus 176 ~~~-~~L~~L~L~~n~~l~--------~i~~~~~~~l~~~L~~L~l~~N 215 (239)
T 2xwt_C 176 FNG-TKLDAVYLNKNKYLT--------VIDKDAFGGVYSGPSLLDVSQT 215 (239)
T ss_dssp TTT-CEEEEEECTTCTTCC--------EECTTTTTTCSBCCSEEECTTC
T ss_pred cCC-CCCCEEEcCCCCCcc--------cCCHHHhhccccCCcEEECCCC
Confidence 555 788888887531 21 1112235556 77777777644
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.38 E-value=1.4e-12 Score=154.51 Aligned_cols=174 Identities=20% Similarity=0.281 Sum_probs=147.7
Q ss_pred ChhhhccCeEeeeccCCCCCCCCCCCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCCcchhcccccCeE
Q 001999 493 SEEEWKDTKKLSLFGFPSSTLPDMPNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLPPSISRLINLNAL 572 (984)
Q Consensus 493 ~~~~~~~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L 572 (984)
.......++.|.+.++.+..++.+..+++|+.|++++|.+..++. +..+++|+.|+|++|.+..+| .++.|++|++|
T Consensus 38 ~~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L 114 (605)
T 1m9s_A 38 TQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSL 114 (605)
T ss_dssp CHHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEE
T ss_pred chhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCCh-hhccCCCCCEE
Confidence 345678899999999999999988999999999999999999887 899999999999999999887 69999999999
Q ss_pred ecCCCcccccCchhhhccCCCcEEEecCccccccchhhhccCCCCeeecccccccCccccCCCCCCcccchhhhhccccc
Q 001999 573 FLRSCSLLFQLPKEIRYLQKLEILDVRHTRIQCLPSEIGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSNIISKLCLL 652 (984)
Q Consensus 573 ~L~~c~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~~L~~L 652 (984)
+|++|. +..+| .++.|++|+.|++++|.+..+ ..+..+++|++|+++ +|.... ++. +..+++|
T Consensus 115 ~Ls~N~-l~~l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls-----~N~l~~-------~~~--l~~l~~L 177 (605)
T 1m9s_A 115 SLEHNG-ISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLE-----DNQISD-------IVP--LAGLTKL 177 (605)
T ss_dssp ECTTSC-CCCCG-GGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECC-----SSCCCC-------CGG--GTTCTTC
T ss_pred EecCCC-CCCCc-cccCCCccCEEECCCCccCCc-hhhcccCCCCEEECc-----CCcCCC-------chh--hccCCCC
Confidence 999975 66664 599999999999999999988 578999999999998 554433 332 7899999
Q ss_pred cceeeeecCCchhHHhhhhhhhHHHhhccCCCceEEEecCCcch
Q 001999 653 EELIIEVLDPSDRRWKQNVESIAGEIAALEQLTTLHFYFPTIKC 696 (984)
Q Consensus 653 ~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 696 (984)
+.|++.++.... ...+..+++|+.|+++.+....
T Consensus 178 ~~L~Ls~N~i~~----------l~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 178 QNLYLSKNHISD----------LRALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CEEECCSSCCCB----------CGGGTTCTTCSEEECCSEEEEC
T ss_pred CEEECcCCCCCC----------ChHHccCCCCCEEEccCCcCcC
Confidence 999998754431 1358889999999998776543
No 103
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.34 E-value=5e-12 Score=131.03 Aligned_cols=146 Identities=21% Similarity=0.233 Sum_probs=120.0
Q ss_pred CeEeeeccCCCCCCCCCCCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCCc-chhcccccCeEecCCCc
Q 001999 500 TKKLSLFGFPSSTLPDMPNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLPP-SISRLINLNALFLRSCS 578 (984)
Q Consensus 500 ~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~c~ 578 (984)
.+.+...++.+..+|.. -.++|+.|++++|.+..++...|.++++|++|+|++|.++.+|. .+..+.+|++|+|++|
T Consensus 21 ~~~v~c~~~~l~~ip~~-~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N- 98 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAG-IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN- 98 (229)
T ss_dssp TTEEECTTSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-
T ss_pred CCEeEccCCCcCccCCC-CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC-
Confidence 44577777778777753 23889999999999999877668999999999999999998875 4689999999999996
Q ss_pred ccccCchh-hhccCCCcEEEecCccccccchhhhccCCCCeeecccccccCccccCCCCCCcccchhhhhccccccceee
Q 001999 579 LLFQLPKE-IRYLQKLEILDVRHTRIQCLPSEIGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSNIISKLCLLEELII 657 (984)
Q Consensus 579 ~l~~lp~~-i~~L~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~~L~~L~~L~l 657 (984)
.++.+|.. ++.+++|++|++++|++..+|..+..+++|++|+++ ++.. . .++...+..+++|+.|++
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~-----~N~l-~------~~~~~~~~~l~~L~~L~l 166 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALD-----QNQL-K------SIPHGAFDRLSSLTHAYL 166 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECC-----SSCC-C------CCCTTTTTTCTTCCEEEC
T ss_pred cCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECC-----CCcC-C------ccCHHHHhCCCCCCEEEe
Confidence 46777654 688999999999999999999999999999999998 5543 3 366566788888888887
Q ss_pred ee
Q 001999 658 EV 659 (984)
Q Consensus 658 ~~ 659 (984)
.+
T Consensus 167 ~~ 168 (229)
T 3e6j_A 167 FG 168 (229)
T ss_dssp TT
T ss_pred eC
Confidence 75
No 104
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.34 E-value=3.7e-12 Score=128.74 Aligned_cols=152 Identities=20% Similarity=0.228 Sum_probs=126.4
Q ss_pred CCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCCcchhcccccCeEecCCCcccccCchhhhccCCCcEE
Q 001999 517 PNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLPPSISRLINLNALFLRSCSLLFQLPKEIRYLQKLEIL 596 (984)
Q Consensus 517 ~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L 596 (984)
..+++|+.|++++|.+..+| . +..+++|++|++++|.++.++ .+..+++|++|++++|......|..++.+++|++|
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~-l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-G-IEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-T-GGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hhcCCccEEeccCCCccChH-H-HhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 56789999999999999988 4 899999999999999887775 68999999999999976444578889999999999
Q ss_pred EecCccccc-cchhhhccCCCCeeecccccccCccccCCCCCCcccchhhhhccccccceeeeecCCchhHHhhhhhhhH
Q 001999 597 DVRHTRIQC-LPSEIGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSNIISKLCLLEELIIEVLDPSDRRWKQNVESIA 675 (984)
Q Consensus 597 ~l~~~~l~~-lp~~~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~ 675 (984)
++++|.+.. .|..++.+++|++|+++ +|.... .+| .+..+++|+.|++.++.... .
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~-----~n~~i~------~~~--~l~~l~~L~~L~l~~n~i~~---------~- 174 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLS-----YNGAIT------DIM--PLKTLPELKSLNIQFDGVHD---------Y- 174 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECC-----SCTBCC------CCG--GGGGCSSCCEEECTTBCCCC---------C-
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEcc-----CCCCcc------ccH--hhcCCCCCCEEECCCCCCcC---------h-
Confidence 999999984 77889999999999999 555333 355 38999999999998754431 1
Q ss_pred HHhhccCCCceEEEecCCc
Q 001999 676 GEIAALEQLTTLHFYFPTI 694 (984)
Q Consensus 676 ~~l~~l~~L~~L~l~~~~~ 694 (984)
..+..+++|+.|+++.+.+
T Consensus 175 ~~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 175 RGIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp TTGGGCSSCCEEEECBC--
T ss_pred HHhccCCCCCEEEeeCccc
Confidence 2678899999999987654
No 105
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.34 E-value=4.9e-12 Score=141.20 Aligned_cols=97 Identities=13% Similarity=0.157 Sum_probs=50.4
Q ss_pred EecCcccCCCcchHhhcCCCccEEeccCCCCccCC-----cchhccc-ccCeEecCCCcccccCchhhhcc-----CCCc
Q 001999 526 IVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLP-----PSISRLI-NLNALFLRSCSLLFQLPKEIRYL-----QKLE 594 (984)
Q Consensus 526 ~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp-----~~i~~l~-~L~~L~L~~c~~l~~lp~~i~~L-----~~L~ 594 (984)
.++.+.+....+.++...++|++|+|++|.++..+ ..+..++ +|++|+|++|..-...+..+..+ ++|+
T Consensus 4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~ 83 (362)
T 3goz_A 4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT 83 (362)
T ss_dssp ECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCC
T ss_pred ccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCcc
Confidence 34445554444443444444666666666665543 3444555 56666666654222334444443 6666
Q ss_pred EEEecCccccccchh-----hhcc-CCCCeeecc
Q 001999 595 ILDVRHTRIQCLPSE-----IGQL-IKLKCLRVS 622 (984)
Q Consensus 595 ~L~l~~~~l~~lp~~-----~~~L-~~L~~L~l~ 622 (984)
+|++++|.+...+.. +..+ ++|++|+++
T Consensus 84 ~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls 117 (362)
T 3goz_A 84 SLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLG 117 (362)
T ss_dssp EEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECC
T ss_pred EEECcCCcCChHHHHHHHHHHHhCCCCccEEECc
Confidence 666666666533322 3333 566666665
No 106
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.33 E-value=9.8e-11 Score=131.93 Aligned_cols=281 Identities=10% Similarity=0.046 Sum_probs=178.1
Q ss_pred CCCCchHHHHHHHHHHhcc----CCccEEEEEcCCCChHHHHHHHhhhhcccC----CC--CCeEEEEEeCCCC-CHHHH
Q 001999 154 SKFPSHKEYVETLEKHLSS----GGLKKICICGPLGVGKTTIMENSHDSVGES----GR--FDIIFWVNVNTDG-NISDI 222 (984)
Q Consensus 154 ~~~vgr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~----~~--F~~~~wv~vs~~~-~~~~i 222 (984)
..++||+++++++.+++.. ...+.+.|+|++|+||||+|+...+..... .. ....+|++.+... +...+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 7799999999999877754 446789999999999999999966655210 11 2356788877766 88888
Q ss_pred HHHHHHHhccCcc---ccchHHHHHHHHHHHcCCcEEEEEECCCCccc---hhh-h-ccccCCCCcEEEEEcCCccc---
Q 001999 223 QEIILERLKVNAK---ELDNAQRADNISKELKDKRYVLFLDGVSSEIN---FKE-I-GIHDDHGRGKVVFACRSREF--- 291 (984)
Q Consensus 223 ~~~i~~~l~~~~~---~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~---~~~-~-~~~~~~~gs~ilvTTR~~~v--- 291 (984)
...++.++..... ..........+.+.+..++.+|||||++.... .+. + .+.....+..||+||+....
T Consensus 100 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~~~~ 179 (384)
T 2qby_B 100 LSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINVRDY 179 (384)
T ss_dssp HHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTTTTTT
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCchHhh
Confidence 8998888732211 11225667778888888777999999976432 222 1 11111167889999987532
Q ss_pred -cc----cCCceEEccCCChHHHHHHHHHHhCC---CCCCCcchHHHHHHHHHHcC---CCch-HHHHHHHHh--h---c
Q 001999 292 -CW----QADDVIHVERLSPREAKKLFWEVVGV---NLKKNPDIEQEADSIVEECG---GMPY-MLKLIGKEL--V---N 354 (984)
Q Consensus 292 -~~----~~~~~~~l~~L~~~~~~~Lf~~~~~~---~~~~~~~l~~~~~~I~~~c~---GlPl-ai~~~~~~l--~---~ 354 (984)
.. .....+.+++++.++..+++.+.+.. ....+ .+..+.|++.++ |.|. |+..+-.+. + .
T Consensus 180 l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~ 256 (384)
T 2qby_B 180 MEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYD---DEILSYIAAISAKEHGDARKAVNLLFRAAQLASGGG 256 (384)
T ss_dssp SCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCC---SHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSS
T ss_pred hCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcC---HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCC
Confidence 11 22349999999999999999987542 22122 345677888887 8886 433333322 2 1
Q ss_pred CccHHHHHHHHHHhhcCCccccccHHHHHHHHHHHHhcChHHHHHHHhhhcccCCCCccCHHHHHHHHhhcCCCCccCcc
Q 001999 355 QSEVAIWRATVDDLRSTSSEEKKELEEVYRFFKLVYKNLSSVQQHCLLGWAIFPTGLEISQDYIIDCWAAQKFLPRFGKI 434 (984)
Q Consensus 355 ~~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~s~fp~~~~i~~~~Li~~W~aeg~i~~~~~~ 434 (984)
..+.+.+..+++... ...+.-++..|+.+.+..+..++....+-.+. +.....--..| +.
T Consensus 257 ~i~~~~v~~~~~~~~-------------~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~-~~~~~~~~~~g-~~----- 316 (384)
T 2qby_B 257 IIRKEHVDKAIVDYE-------------QERLIEAVKALPFHYKLALRSLIESEDVMSAH-KMYTDLCNKFK-QK----- 316 (384)
T ss_dssp CCCHHHHHHHHHHHH-------------HHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHH-HHHHHHHHHTT-CC-----
T ss_pred ccCHHHHHHHHHHHh-------------cchHHHHHHcCCHHHHHHHHHHHHhcccChHH-HHHHHHHHHcC-CC-----
Confidence 246667766665421 13455677889888777776666511100110 01111111122 11
Q ss_pred cchhhHHHHHHHHHhhccccccc
Q 001999 435 GDARDTGCLILDKFEKKSLLQKQ 457 (984)
Q Consensus 435 ~~~~~~~~~~~~~L~~~~ll~~~ 457 (984)
........++++.|..+++++..
T Consensus 317 ~~~~~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 317 PLSYRRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp CCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHHHHHhCCCEEEE
Confidence 12345677899999999999864
No 107
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.31 E-value=2e-12 Score=153.08 Aligned_cols=166 Identities=24% Similarity=0.309 Sum_probs=130.7
Q ss_pred CeEeeeccCCCCCCCCCCCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCCcchhcccccCeEecCCCcc
Q 001999 500 TKKLSLFGFPSSTLPDMPNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLPPSISRLINLNALFLRSCSL 579 (984)
Q Consensus 500 ~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~ 579 (984)
+.++.+..+.+..+.....+++|+.|+++++.+..++. +..+++|+.|+|++|.+..+|. ++.|++|++|+|++|.
T Consensus 23 l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~- 98 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENK- 98 (605)
T ss_dssp HHHHHTTCSCTTSEECHHHHTTCCCCBCTTCCCCCCTT--GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSC-
T ss_pred HHHHhccCCCcccccchhcCCCCCEEECcCCCCCCChH--HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCC-
Confidence 33444445555555555678899999999999998874 8899999999999999999876 9999999999999974
Q ss_pred cccCchhhhccCCCcEEEecCccccccchhhhccCCCCeeecccccccCccccCCCCCCcccchhhhhccccccceeeee
Q 001999 580 LFQLPKEIRYLQKLEILDVRHTRIQCLPSEIGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSNIISKLCLLEELIIEV 659 (984)
Q Consensus 580 l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~~L~~L~~L~l~~ 659 (984)
+..+| .++.+++|++|++++|.+..+| .+..|++|+.|+++ +|.... + ..++.|++|+.|++.+
T Consensus 99 l~~l~-~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls-----~N~l~~-------l--~~l~~l~~L~~L~Ls~ 162 (605)
T 1m9s_A 99 IKDLS-SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLG-----NNKITD-------I--TVLSRLTKLDTLSLED 162 (605)
T ss_dssp CCCCT-TSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECC-----SSCCCC-------C--GGGGSCTTCSEEECCS
T ss_pred CCCCh-hhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECC-----CCccCC-------c--hhhcccCCCCEEECcC
Confidence 67766 6899999999999999999875 58899999999998 554332 3 2478899999999987
Q ss_pred cCCchhHHhhhhhhhHHHhhccCCCceEEEecCCcc
Q 001999 660 LDPSDRRWKQNVESIAGEIAALEQLTTLHFYFPTIK 695 (984)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 695 (984)
+.... .. .+..+++|+.|+|+.+...
T Consensus 163 N~l~~---------~~-~l~~l~~L~~L~Ls~N~i~ 188 (605)
T 1m9s_A 163 NQISD---------IV-PLAGLTKLQNLYLSKNHIS 188 (605)
T ss_dssp SCCCC---------CG-GGTTCTTCCEEECCSSCCC
T ss_pred CcCCC---------ch-hhccCCCCCEEECcCCCCC
Confidence 54432 11 1788899999999866543
No 108
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.31 E-value=3.2e-12 Score=144.18 Aligned_cols=163 Identities=12% Similarity=0.123 Sum_probs=82.4
Q ss_pred CcCceeEEEecCcccCCCcch----HhhcCCCccEEeccCCCCcc----CCcch-------hcccccCeEecCCCcccc-
Q 001999 518 NCCEILTLIVEGRRLEKLPMS----FFEYMCHLQLLDLHDTSIRC----LPPSI-------SRLINLNALFLRSCSLLF- 581 (984)
Q Consensus 518 ~~~~L~~L~l~~~~l~~l~~~----~~~~l~~Lr~L~L~~~~i~~----lp~~i-------~~l~~L~~L~L~~c~~l~- 581 (984)
.+++|++|++++|.+...... .+..+++|++|+|++|.+.. +|..+ ..+++|++|+|++|..-.
T Consensus 30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 109 (386)
T 2ca6_A 30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT 109 (386)
T ss_dssp HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence 445566666666655432211 14456666666666654432 23333 456666666666654222
Q ss_pred ---cCchhhhccCCCcEEEecCcccc-----ccchhhhcc---------CCCCeeecccccccCccccCCCCCCcccch-
Q 001999 582 ---QLPKEIRYLQKLEILDVRHTRIQ-----CLPSEIGQL---------IKLKCLRVSWVENVGNHTHAGAWPGEMISS- 643 (984)
Q Consensus 582 ---~lp~~i~~L~~L~~L~l~~~~l~-----~lp~~~~~L---------~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~- 643 (984)
.+|..+.++++|++|++++|.+. .++..+..+ ++|++|+++ +|.... ..++.
T Consensus 110 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~-----~n~l~~-----~~~~~l 179 (386)
T 2ca6_A 110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICG-----RNRLEN-----GSMKEW 179 (386)
T ss_dssp THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECC-----SSCCTG-----GGHHHH
T ss_pred HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECC-----CCCCCc-----HHHHHH
Confidence 25555666666666666666654 222233333 666666666 332211 01221
Q ss_pred -hhhhccccccceeeeecCCchhHHhhhhhhhHH-HhhccCCCceEEEecCCc
Q 001999 644 -NIISKLCLLEELIIEVLDPSDRRWKQNVESIAG-EIAALEQLTTLHFYFPTI 694 (984)
Q Consensus 644 -~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~ 694 (984)
..+..+++|++|++.++..... ....... .+..+++|+.|+++.+..
T Consensus 180 ~~~l~~~~~L~~L~L~~n~l~~~----g~~~l~~~~l~~~~~L~~L~Ls~n~l 228 (386)
T 2ca6_A 180 AKTFQSHRLLHTVKMVQNGIRPE----GIEHLLLEGLAYCQELKVLDLQDNTF 228 (386)
T ss_dssp HHHHHHCTTCCEEECCSSCCCHH----HHHHHHHTTGGGCTTCCEEECCSSCC
T ss_pred HHHHHhCCCcCEEECcCCCCCHh----HHHHHHHHHhhcCCCccEEECcCCCC
Confidence 2245566666666665443311 0111222 555666666666665543
No 109
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.31 E-value=7.3e-12 Score=128.86 Aligned_cols=145 Identities=23% Similarity=0.322 Sum_probs=116.3
Q ss_pred eEeeeccCCCCCCCCCCCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccC-CcchhcccccCeEecCCCcc
Q 001999 501 KKLSLFGFPSSTLPDMPNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCL-PPSISRLINLNALFLRSCSL 579 (984)
Q Consensus 501 r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~c~~ 579 (984)
+.+...++.+..+|... .++|+.|++++|.+..++...|..+++|++|+|++|.++.+ |..+..+.+|++|+|++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l-~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~- 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNL-PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK- 91 (220)
T ss_dssp TEEECTTSCCSSCCSSC-CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC-
T ss_pred CEEEcCCCCcCcCCCcc-CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc-
Confidence 45677777777777532 26899999999999988877788999999999999999877 7789999999999999964
Q ss_pred cccCchh-hhccCCCcEEEecCccccccc-hhhhccCCCCeeecccccccCccccCCCCCCcccchhhhhccccccceee
Q 001999 580 LFQLPKE-IRYLQKLEILDVRHTRIQCLP-SEIGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSNIISKLCLLEELII 657 (984)
Q Consensus 580 l~~lp~~-i~~L~~L~~L~l~~~~l~~lp-~~~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~~L~~L~~L~l 657 (984)
++.+|.. +..+++|++|++++|++..++ ..+..+++|++|+++ ++... .++...+..+++|+.|++
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~-----~N~l~-------~~~~~~~~~l~~L~~L~L 159 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLY-----DNKLQ-------TIAKGTFSPLRAIQTMHL 159 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-----SSCCS-------CCCTTTTTTCTTCCEEEC
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECC-----CCcCC-------EECHHHHhCCCCCCEEEe
Confidence 7777765 588999999999999998774 568889999999998 55433 355556777888888877
Q ss_pred ee
Q 001999 658 EV 659 (984)
Q Consensus 658 ~~ 659 (984)
.+
T Consensus 160 ~~ 161 (220)
T 2v9t_B 160 AQ 161 (220)
T ss_dssp CS
T ss_pred CC
Confidence 75
No 110
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.30 E-value=1.9e-12 Score=137.23 Aligned_cols=165 Identities=17% Similarity=0.194 Sum_probs=96.1
Q ss_pred cCeEeeeccCCCCCCCCCCCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCCcchhcccccCeEecCCCc
Q 001999 499 DTKKLSLFGFPSSTLPDMPNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLPPSISRLINLNALFLRSCS 578 (984)
Q Consensus 499 ~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~ 578 (984)
++.++.+.++.+..++.+..+++|+.|++++|.+..++ . +..+++|++|+|++|.++.+|. ++.+++|++|++++|
T Consensus 20 ~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~-~-l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N- 95 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA-G-MQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRN- 95 (263)
T ss_dssp HHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCT-T-GGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSS-
T ss_pred HHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccch-H-HhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCC-
Confidence 34444455555555554555666666666666666665 2 5666666666666666666655 666666666666664
Q ss_pred ccccCchhhhccCCCcEEEecCccccccchhhhccCCCCeeecccccccCccccCCCCCCcccchhhhhccccccceeee
Q 001999 579 LLFQLPKEIRYLQKLEILDVRHTRIQCLPSEIGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSNIISKLCLLEELIIE 658 (984)
Q Consensus 579 ~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~~L~~L~~L~l~ 658 (984)
.++.+|.... .+|++|++++|+++.+| .++.+++|++|+++ ++... .++ .++.+++|+.|++.
T Consensus 96 ~l~~l~~~~~--~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls-----~N~i~-------~~~--~l~~l~~L~~L~L~ 158 (263)
T 1xeu_A 96 RLKNLNGIPS--ACLSRLFLDNNELRDTD-SLIHLKNLEILSIR-----NNKLK-------SIV--MLGFLSKLEVLDLH 158 (263)
T ss_dssp CCSCCTTCCC--SSCCEEECCSSCCSBSG-GGTTCTTCCEEECT-----TSCCC-------BCG--GGGGCTTCCEEECT
T ss_pred ccCCcCcccc--CcccEEEccCCccCCCh-hhcCcccccEEECC-----CCcCC-------CCh--HHccCCCCCEEECC
Confidence 3555554222 66666666666666654 46666666666666 33322 233 25666666666666
Q ss_pred ecCCchhHHhhhhhhhHHHhhccCCCceEEEecCCc
Q 001999 659 VLDPSDRRWKQNVESIAGEIAALEQLTTLHFYFPTI 694 (984)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 694 (984)
+..... . ..+..+++|+.|+++.+..
T Consensus 159 ~N~i~~---------~-~~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 159 GNEITN---------T-GGLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp TSCCCB---------C-TTSTTCCCCCEEEEEEEEE
T ss_pred CCcCcc---------h-HHhccCCCCCEEeCCCCcc
Confidence 533221 1 3456677777777775543
No 111
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.30 E-value=4.3e-12 Score=129.58 Aligned_cols=144 Identities=23% Similarity=0.362 Sum_probs=83.7
Q ss_pred EeeeccCCCCCCCCCCCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCCcc-hhcccccCeEecCCCccc
Q 001999 502 KLSLFGFPSSTLPDMPNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLPPS-ISRLINLNALFLRSCSLL 580 (984)
Q Consensus 502 ~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~c~~l 580 (984)
.+...++.+..+|. .-.++|+.|++++|.+..++...|.++++|++|++++|.++.+|.. +..+.+|++|++++|. +
T Consensus 11 ~v~c~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l 88 (208)
T 2o6s_A 11 TVECYSQGRTSVPT-GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ-L 88 (208)
T ss_dssp EEECCSSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-C
T ss_pred EEEecCCCccCCCC-CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc-C
Confidence 34444444444442 2234666666666666666665566666666666666666666443 4566666666666643 4
Q ss_pred ccCchh-hhccCCCcEEEecCccccccchh-hhccCCCCeeecccccccCccccCCCCCCcccchhhhhccccccceeee
Q 001999 581 FQLPKE-IRYLQKLEILDVRHTRIQCLPSE-IGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSNIISKLCLLEELIIE 658 (984)
Q Consensus 581 ~~lp~~-i~~L~~L~~L~l~~~~l~~lp~~-~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~~L~~L~~L~l~ 658 (984)
+.+|.. ++++++|++|++++|.+..+|.. +..+++|++|+++ ++... .++...+.++++|+.|++.
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~-----~N~l~-------~~~~~~~~~l~~L~~L~l~ 156 (208)
T 2o6s_A 89 QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLY-----QNQLK-------SVPDGVFDRLTSLQYIWLH 156 (208)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-----SSCCS-------CCCTTTTTTCTTCCEEECC
T ss_pred CccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECC-----CCccc-------eeCHHHhccCCCccEEEec
Confidence 444443 46666666666666666665554 4566666666666 33322 2444445666666666665
Q ss_pred e
Q 001999 659 V 659 (984)
Q Consensus 659 ~ 659 (984)
+
T Consensus 157 ~ 157 (208)
T 2o6s_A 157 D 157 (208)
T ss_dssp S
T ss_pred C
Confidence 4
No 112
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.30 E-value=9.7e-12 Score=127.96 Aligned_cols=145 Identities=17% Similarity=0.240 Sum_probs=113.6
Q ss_pred eEeeeccCCCCCCCCCCCcCceeEEEecCcccCCC-cchHhhcCCCccEEeccCCCCccCCc-chhcccccCeEecCCCc
Q 001999 501 KKLSLFGFPSSTLPDMPNCCEILTLIVEGRRLEKL-PMSFFEYMCHLQLLDLHDTSIRCLPP-SISRLINLNALFLRSCS 578 (984)
Q Consensus 501 r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~l-~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~c~ 578 (984)
+.+.++++.+..+|.. -.+.++.|++++|.+..+ +...|.++++|++|+|++|.++.++. .++.+.+|++|+|++|.
T Consensus 14 ~~l~~s~n~l~~iP~~-~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEH-IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp TEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEeEeCCCCcccCccC-CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence 4788888888887752 235678999999998887 44558899999999999999998755 78899999999999965
Q ss_pred ccccCc-hhhhccCCCcEEEecCcccccc-chhhhccCCCCeeecccccccCccccCCCCCCcccchhhhhcccccccee
Q 001999 579 LLFQLP-KEIRYLQKLEILDVRHTRIQCL-PSEIGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSNIISKLCLLEELI 656 (984)
Q Consensus 579 ~l~~lp-~~i~~L~~L~~L~l~~~~l~~l-p~~~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~~L~~L~~L~ 656 (984)
++.+| ..++.+++|++|++++|++..+ |..+..+++|++|+++ ++.... ++...+..+++|+.|+
T Consensus 93 -l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~-----~N~l~~-------~~~~~~~~l~~L~~L~ 159 (220)
T 2v70_A 93 -LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLY-----DNQITT-------VAPGAFDTLHSLSTLN 159 (220)
T ss_dssp -CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECT-----TSCCCC-------BCTTTTTTCTTCCEEE
T ss_pred -cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECC-----CCcCCE-------ECHHHhcCCCCCCEEE
Confidence 55554 4588899999999999999877 5668899999999998 554433 4445577788888887
Q ss_pred eee
Q 001999 657 IEV 659 (984)
Q Consensus 657 l~~ 659 (984)
+.+
T Consensus 160 L~~ 162 (220)
T 2v70_A 160 LLA 162 (220)
T ss_dssp CCS
T ss_pred ecC
Confidence 775
No 113
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.29 E-value=1.8e-10 Score=129.95 Aligned_cols=282 Identities=12% Similarity=0.082 Sum_probs=178.5
Q ss_pred CCCCchHHHHHHHHHHhcc----CCccEEEEEcCCCChHHHHHHHhhhhcccC----CCCCeEEEEEeCCCCCHHHHHHH
Q 001999 154 SKFPSHKEYVETLEKHLSS----GGLKKICICGPLGVGKTTIMENSHDSVGES----GRFDIIFWVNVNTDGNISDIQEI 225 (984)
Q Consensus 154 ~~~vgr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~----~~F~~~~wv~vs~~~~~~~i~~~ 225 (984)
+.++||+++++++.+++.. ...+.+.|+|++|+||||+|+...+..... ..--..+|++.....+...+...
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 98 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASA 98 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHH
Confidence 6799999999999998853 456789999999999999999965555210 00124678888888888999999
Q ss_pred HHHHhccCccccc--hHHHHHHHHHHHc--CCcEEEEEECCCCccch----hhh----ccccC---CCCcEEEEEcCCcc
Q 001999 226 ILERLKVNAKELD--NAQRADNISKELK--DKRYVLFLDGVSSEINF----KEI----GIHDD---HGRGKVVFACRSRE 290 (984)
Q Consensus 226 i~~~l~~~~~~~~--~~~~~~~l~~~L~--~kr~LlVlDdv~~~~~~----~~~----~~~~~---~~gs~ilvTTR~~~ 290 (984)
++.+++....... ..+....+.+.+. +++.+|||||++..... +.+ ..... ..+..+|+||+...
T Consensus 99 l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~ 178 (387)
T 2v1u_A 99 IAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLG 178 (387)
T ss_dssp HHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCST
T ss_pred HHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCc
Confidence 9999876433222 2555666777773 56899999999864321 111 11121 44567788877653
Q ss_pred cc----c----cCC-ceEEccCCChHHHHHHHHHHhCC---CCCCCcchHHHHHHHHHHcC---CCchHH-HHHHHHhh-
Q 001999 291 FC----W----QAD-DVIHVERLSPREAKKLFWEVVGV---NLKKNPDIEQEADSIVEECG---GMPYML-KLIGKELV- 353 (984)
Q Consensus 291 v~----~----~~~-~~~~l~~L~~~~~~~Lf~~~~~~---~~~~~~~l~~~~~~I~~~c~---GlPlai-~~~~~~l~- 353 (984)
.. . ... ..+.+++++.++..+++.+.+.. .....+ +..+.|++.++ |.|..+ ..+..+..
T Consensus 179 ~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~ 255 (387)
T 2v1u_A 179 FVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDP---DVVPLCAALAAREHGDARRALDLLRVAGEI 255 (387)
T ss_dssp TSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCS---SHHHHHHHHHHSSSCCHHHHHHHHHHHHHH
T ss_pred hHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCH---HHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 21 1 222 47999999999999999987542 222222 35677888887 999433 33322221
Q ss_pred ------cCccHHHHHHHHHHhhcCCccccccHHHHHHHHHHHHhcChHHHHHHHhhhc-ccCCCCccCHHHHHHHHh---
Q 001999 354 ------NQSEVAIWRATVDDLRSTSSEEKKELEEVYRFFKLVYKNLSSVQQHCLLGWA-IFPTGLEISQDYIIDCWA--- 423 (984)
Q Consensus 354 ------~~~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~s-~fp~~~~i~~~~Li~~W~--- 423 (984)
..-+.+.++.+++... ...+.-++..|+.+.+..+...+ ++..+..+....+.+...
T Consensus 256 a~~~~~~~i~~~~v~~a~~~~~-------------~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~ 322 (387)
T 2v1u_A 256 AERRREERVRREHVYSARAEIE-------------RDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELT 322 (387)
T ss_dssp HHHTTCSCBCHHHHHHHHHHHH-------------HHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHH
T ss_pred HHHcCCCCcCHHHHHHHHHHHh-------------hchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Confidence 1135566665554421 12345567889988777666555 443223455554444321
Q ss_pred -hcCCCCccCcccchhhHHHHHHHHHhhccccccc
Q 001999 424 -AQKFLPRFGKIGDARDTGCLILDKFEKKSLLQKQ 457 (984)
Q Consensus 424 -aeg~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~~ 457 (984)
..| +. ......+..+++.|...|+++..
T Consensus 323 ~~~~-~~-----~~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 323 STLG-LE-----HVTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp HHTT-CC-----CCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HhcC-CC-----CCCHHHHHHHHHHHHhCCCeEEE
Confidence 122 11 12346678899999999999874
No 114
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.28 E-value=2.1e-11 Score=129.24 Aligned_cols=147 Identities=20% Similarity=0.253 Sum_probs=127.9
Q ss_pred ChhhhccCeEeeeccCCCCCCCCCCCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCCcchhcccccCeE
Q 001999 493 SEEEWKDTKKLSLFGFPSSTLPDMPNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLPPSISRLINLNAL 572 (984)
Q Consensus 493 ~~~~~~~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L 572 (984)
......+++.|.+.+|.+..++.+..+++|+.|++++|.+..++. +.++++|++|++++|.++.+|.... .+|++|
T Consensus 36 ~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L 111 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRL 111 (263)
T ss_dssp CHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEE
T ss_pred chhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCcCcccc--CcccEE
Confidence 455678999999999999999988899999999999999999987 8999999999999999999876444 999999
Q ss_pred ecCCCcccccCchhhhccCCCcEEEecCccccccchhhhccCCCCeeecccccccCccccCCCCCCcccchhhhhccccc
Q 001999 573 FLRSCSLLFQLPKEIRYLQKLEILDVRHTRIQCLPSEIGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSNIISKLCLL 652 (984)
Q Consensus 573 ~L~~c~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~~L~~L 652 (984)
++++| .++.+| .++++++|++|++++|+++.+| .++.+++|++|+++ ++.... + ..+..+++|
T Consensus 112 ~L~~N-~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~-----~N~i~~-------~--~~l~~l~~L 174 (263)
T 1xeu_A 112 FLDNN-ELRDTD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLH-----GNEITN-------T--GGLTRLKKV 174 (263)
T ss_dssp ECCSS-CCSBSG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECT-----TSCCCB-------C--TTSTTCCCC
T ss_pred EccCC-ccCCCh-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECC-----CCcCcc-------h--HHhccCCCC
Confidence 99997 477776 5999999999999999999987 78999999999999 554433 3 347889999
Q ss_pred cceeeeec
Q 001999 653 EELIIEVL 660 (984)
Q Consensus 653 ~~L~l~~~ 660 (984)
+.|++.+.
T Consensus 175 ~~L~l~~N 182 (263)
T 1xeu_A 175 NWIDLTGQ 182 (263)
T ss_dssp CEEEEEEE
T ss_pred CEEeCCCC
Confidence 99999863
No 115
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.27 E-value=2e-11 Score=126.55 Aligned_cols=125 Identities=23% Similarity=0.401 Sum_probs=113.8
Q ss_pred hccCeEeeeccCCCCCCCC--CCCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCCcc-hhcccccCeEe
Q 001999 497 WKDTKKLSLFGFPSSTLPD--MPNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLPPS-ISRLINLNALF 573 (984)
Q Consensus 497 ~~~~r~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~-i~~l~~L~~L~ 573 (984)
..+++.|.+++|.+..++. +..+++|+.|++++|.+..++...|.++++|++|+|++|.++.+|.. +..+.+|++|+
T Consensus 39 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~ 118 (229)
T 3e6j_A 39 PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELF 118 (229)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEe
Confidence 3689999999999998743 57899999999999999999988889999999999999999998664 68999999999
Q ss_pred cCCCcccccCchhhhccCCCcEEEecCccccccchh-hhccCCCCeeecc
Q 001999 574 LRSCSLLFQLPKEIRYLQKLEILDVRHTRIQCLPSE-IGQLIKLKCLRVS 622 (984)
Q Consensus 574 L~~c~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~-~~~L~~L~~L~l~ 622 (984)
|++| .++.+|..+.++++|++|++++|++..+|.. +..+++|++|++.
T Consensus 119 Ls~N-~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 167 (229)
T 3e6j_A 119 MCCN-KLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLF 167 (229)
T ss_dssp CCSS-CCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECT
T ss_pred ccCC-cccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEee
Confidence 9996 4789999999999999999999999988854 8899999999998
No 116
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.27 E-value=9.8e-12 Score=119.34 Aligned_cols=101 Identities=19% Similarity=0.238 Sum_probs=52.5
Q ss_pred CceeEEEecCcccC--CCcchHhhcCCCccEEeccCCCCccCCcchhcccccCeEecCCCcccccCchhhhccCCCcEEE
Q 001999 520 CEILTLIVEGRRLE--KLPMSFFEYMCHLQLLDLHDTSIRCLPPSISRLINLNALFLRSCSLLFQLPKEIRYLQKLEILD 597 (984)
Q Consensus 520 ~~L~~L~l~~~~l~--~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~ 597 (984)
++|+.|++++|.+. .+|.. +..+++|++|++++|.++.+ ..++.+++|++|++++|.....+|..++++++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGL-TDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSC-CTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHH-HhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 44555555555544 44442 45555555555555555554 4455555555555555432222555555555555555
Q ss_pred ecCccccccc--hhhhccCCCCeeecc
Q 001999 598 VRHTRIQCLP--SEIGQLIKLKCLRVS 622 (984)
Q Consensus 598 l~~~~l~~lp--~~~~~L~~L~~L~l~ 622 (984)
+++|.+..+| ..++.+++|++|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~ 121 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLF 121 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECT
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCc
Confidence 5555555443 445555555555555
No 117
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.26 E-value=3.6e-11 Score=129.55 Aligned_cols=148 Identities=20% Similarity=0.271 Sum_probs=128.8
Q ss_pred ChhhhccCeEeeeccCCCCCCCCCCCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCCcchhcccccCeE
Q 001999 493 SEEEWKDTKKLSLFGFPSSTLPDMPNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLPPSISRLINLNAL 572 (984)
Q Consensus 493 ~~~~~~~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L 572 (984)
.....++++.|.+.+|.+..++.+..+++|+.|++++|.+..++. +..+++|++|++++|.++.++ .++.+++|++|
T Consensus 63 ~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L 139 (291)
T 1h6t_A 63 GIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGISDIN-GLVHLPQLESL 139 (291)
T ss_dssp TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGG--GTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEE
T ss_pred hHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCChh--hccCCCCCEEECCCCcCCCCh-hhcCCCCCCEE
Confidence 345567899999999999998878999999999999999998765 899999999999999999884 68999999999
Q ss_pred ecCCCcccccCchhhhccCCCcEEEecCccccccchhhhccCCCCeeecccccccCccccCCCCCCcccchhhhhccccc
Q 001999 573 FLRSCSLLFQLPKEIRYLQKLEILDVRHTRIQCLPSEIGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSNIISKLCLL 652 (984)
Q Consensus 573 ~L~~c~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~~L~~L 652 (984)
++++|. ++.+ ..++++++|++|++++|.+..++. +..+++|++|+++ ++... .++ .+..+++|
T Consensus 140 ~l~~n~-l~~~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~-----~N~i~-------~l~--~l~~l~~L 202 (291)
T 1h6t_A 140 YLGNNK-ITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLS-----KNHIS-------DLR--ALAGLKNL 202 (291)
T ss_dssp ECCSSC-CCCC-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECC-----SSCCC-------BCG--GGTTCTTC
T ss_pred EccCCc-CCcc-hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECC-----CCcCC-------CCh--hhccCCCC
Confidence 999974 6777 579999999999999999998876 9999999999998 55433 344 27889999
Q ss_pred cceeeeec
Q 001999 653 EELIIEVL 660 (984)
Q Consensus 653 ~~L~l~~~ 660 (984)
+.|++.+.
T Consensus 203 ~~L~l~~n 210 (291)
T 1h6t_A 203 DVLELFSQ 210 (291)
T ss_dssp SEEEEEEE
T ss_pred CEEECcCC
Confidence 99999864
No 118
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.26 E-value=3.1e-11 Score=123.18 Aligned_cols=125 Identities=23% Similarity=0.404 Sum_probs=97.9
Q ss_pred hccCeEeeeccCCCCCCCC--CCCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCCcc-hhcccccCeEe
Q 001999 497 WKDTKKLSLFGFPSSTLPD--MPNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLPPS-ISRLINLNALF 573 (984)
Q Consensus 497 ~~~~r~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~-i~~l~~L~~L~ 573 (984)
.++++.|.+.+|.+..++. +..+++|++|++++|.+..++...|.++++|++|++++|.++.+|.. ++.+++|++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 3578888888888877664 46788888888888888888877678888888888888888877654 57888888888
Q ss_pred cCCCcccccCchh-hhccCCCcEEEecCccccccchh-hhccCCCCeeecc
Q 001999 574 LRSCSLLFQLPKE-IRYLQKLEILDVRHTRIQCLPSE-IGQLIKLKCLRVS 622 (984)
Q Consensus 574 L~~c~~l~~lp~~-i~~L~~L~~L~l~~~~l~~lp~~-~~~L~~L~~L~l~ 622 (984)
+++|. ++.+|.. ++++++|++|++++|.+..+|.. +..+++|++|+++
T Consensus 107 L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 156 (208)
T 2o6s_A 107 LNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLH 156 (208)
T ss_dssp CCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred cCCCc-CcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEec
Confidence 88864 5666554 67888888888888888877765 6778888888887
No 119
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.26 E-value=1.5e-11 Score=120.72 Aligned_cols=122 Identities=20% Similarity=0.193 Sum_probs=66.6
Q ss_pred ccCeEeeeccCCCC--CCCCC-CCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCcc-CCcchhcccccCeEe
Q 001999 498 KDTKKLSLFGFPSS--TLPDM-PNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRC-LPPSISRLINLNALF 573 (984)
Q Consensus 498 ~~~r~l~l~~~~~~--~l~~~-~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~-lp~~i~~l~~L~~L~ 573 (984)
++++.|.+.+|.+. .+|.. ..+++|+.|++++|.+..+ .. +..+++|++|++++|.++. +|..++.+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SN-LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SS-CCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hh-hccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 45556666655554 44433 4555566666665555555 22 5555556666666665554 444444555666666
Q ss_pred cCCCcccccCc--hhhhccCCCcEEEecCccccccch----hhhccCCCCeeecc
Q 001999 574 LRSCSLLFQLP--KEIRYLQKLEILDVRHTRIQCLPS----EIGQLIKLKCLRVS 622 (984)
Q Consensus 574 L~~c~~l~~lp--~~i~~L~~L~~L~l~~~~l~~lp~----~~~~L~~L~~L~l~ 622 (984)
+++| .++.+| ..++.+++|++|++++|.+..+|. .+..+++|++|++.
T Consensus 102 Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 155 (168)
T 2ell_A 102 LSGN-KLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGY 155 (168)
T ss_dssp CBSS-SCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTE
T ss_pred ccCC-ccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCC
Confidence 6554 344444 445555556666666555555554 45555555555555
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.25 E-value=1.3e-11 Score=121.08 Aligned_cols=130 Identities=15% Similarity=0.168 Sum_probs=111.9
Q ss_pred cCceeEEEecCcccC--CCcchHhhcCCCccEEeccCCCCccCCcchhcccccCeEecCCCcccccCchhhhccCCCcEE
Q 001999 519 CCEILTLIVEGRRLE--KLPMSFFEYMCHLQLLDLHDTSIRCLPPSISRLINLNALFLRSCSLLFQLPKEIRYLQKLEIL 596 (984)
Q Consensus 519 ~~~L~~L~l~~~~l~--~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L 596 (984)
.++|+.|++++|.+. .+|.. +..+++|++|++++|.++.+ ..++.+++|++|++++|.....+|..++++++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 478999999999998 88876 79999999999999999988 779999999999999976444488888889999999
Q ss_pred EecCccccccc--hhhhccCCCCeeecccccccCccccCCCCCCcccch---hhhhccccccceeeeecCC
Q 001999 597 DVRHTRIQCLP--SEIGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISS---NIISKLCLLEELIIEVLDP 662 (984)
Q Consensus 597 ~l~~~~l~~lp--~~~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~---~~l~~L~~L~~L~l~~~~~ 662 (984)
++++|.++.+| ..+..+++|++|+++ ++.... +|. ..+..+++|+.|++..+..
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~-----~N~l~~-------~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLF-----NCEVTN-------LNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECC-----SSGGGT-------STTHHHHHHTTCSSCCEETTEETTS
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEee-----CCcCcc-------hHHHHHHHHHhCccCcEecCCCCCh
Confidence 99999999887 679999999999999 554433 454 4689999999999987544
No 121
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.25 E-value=1.7e-09 Score=121.90 Aligned_cols=305 Identities=13% Similarity=0.104 Sum_probs=190.1
Q ss_pred CCCCchHHHHHHHHHHhcc----CCcc--EEEEEcCCCChHHHHHHHhhhhcccCCCC-CeEEEEEeCCCCCHHHHHHHH
Q 001999 154 SKFPSHKEYVETLEKHLSS----GGLK--KICICGPLGVGKTTIMENSHDSVGESGRF-DIIFWVNVNTDGNISDIQEII 226 (984)
Q Consensus 154 ~~~vgr~~~~~~l~~~L~~----~~~~--vi~I~G~gGiGKTtLa~~~~~~~~~~~~F-~~~~wv~vs~~~~~~~i~~~i 226 (984)
..++||+++++++.+++.. .... .+.|+|++|+||||+|+....... ... ...+|+..+...+...+...+
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~l 94 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYK--DKTTARFVYINGFIYRNFTAIIGEI 94 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHT--TSCCCEEEEEETTTCCSHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHh--hhcCeeEEEEeCccCCCHHHHHHHH
Confidence 6799999999999988865 2334 899999999999999999766665 331 356788888888888999999
Q ss_pred HHHhccCcccc--chHHHHHHHHHHHc--CCcEEEEEECCCCcc--chhhh-cccc--C---CCCcEEEEEcCCccccc-
Q 001999 227 LERLKVNAKEL--DNAQRADNISKELK--DKRYVLFLDGVSSEI--NFKEI-GIHD--D---HGRGKVVFACRSREFCW- 293 (984)
Q Consensus 227 ~~~l~~~~~~~--~~~~~~~~l~~~L~--~kr~LlVlDdv~~~~--~~~~~-~~~~--~---~~gs~ilvTTR~~~v~~- 293 (984)
+..++...... ........+.+.+. +++.+|||||++... ....+ .... . ..+..||+||+......
T Consensus 95 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~ 174 (389)
T 1fnn_A 95 ARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNN 174 (389)
T ss_dssp HHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHT
T ss_pred HHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHH
Confidence 99886543321 22555556666554 678999999997642 22222 1111 1 14678888887653221
Q ss_pred --------cCCceEEccCCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHc---------CCCchHHHHHHHHhh---
Q 001999 294 --------QADDVIHVERLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEEC---------GGMPYMLKLIGKELV--- 353 (984)
Q Consensus 294 --------~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c---------~GlPlai~~~~~~l~--- 353 (984)
-....+.+.+++.++..+++...+........--.+..+.|++.+ +|.|..+..+.....
T Consensus 175 l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a 254 (389)
T 1fnn_A 175 LDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAA 254 (389)
T ss_dssp SCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHH
T ss_pred hCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHH
Confidence 123479999999999999998876431101122245778899999 788865544443221
Q ss_pred ---c--CccHHHHHHHHHHhhcCCccccccHHHHHHHHHHHHhcChHHHHHHHhhhcccC---CCCccCHHHHHHHHhh-
Q 001999 354 ---N--QSEVAIWRATVDDLRSTSSEEKKELEEVYRFFKLVYKNLSSVQQHCLLGWAIFP---TGLEISQDYIIDCWAA- 424 (984)
Q Consensus 354 ---~--~~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~s~fp---~~~~i~~~~Li~~W~a- 424 (984)
. ..+.+....+....... .+.-.+..||.+.+.++..++.+. .+..+....+...+..
T Consensus 255 ~~~~~~~i~~~~v~~~~~~~~~~-------------~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~ 321 (389)
T 1fnn_A 255 QQNGRKHIAPEDVRKSSKEVLFG-------------ISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIV 321 (389)
T ss_dssp HHTTCSSCCHHHHHHHHHHHSCC-------------CCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHH
T ss_pred HHhCCCCcCHHHHHHHHHHHhhh-------------hHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHH
Confidence 1 12333333333332111 112335678888887777776554 2224566666655433
Q ss_pred ---cCCCCccCcccchhhHHHHHHHHHhhccccccccc------cc-------ccchHHHHHHHHHHHhhh
Q 001999 425 ---QKFLPRFGKIGDARDTGCLILDKFEKKSLLQKQSK------EK-------RYKMIEFFQRAALRIANE 479 (984)
Q Consensus 425 ---eg~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~------~~-------~~~mHdlv~~~a~~~~~~ 479 (984)
.|... -.......++++|..++++..... .+ .+..|+++..+...+..+
T Consensus 322 ~~~~~~~~------~~~~~~~~~l~~L~~~gli~~~~~~~~~g~~g~~~~~~l~~~~~~v~~~~~~~~~~~ 386 (389)
T 1fnn_A 322 CEEYGERP------RVHSQLWSYLNDLREKGIVETRQNKRGEGVRGRTTLISIGTEPLDTLEAVITKLIKE 386 (389)
T ss_dssp HHHTTCCC------CCHHHHHHHHHHHHHTTSSEEEEC---------CEEEECCSSCHHHHHHHHHHHHHH
T ss_pred HHHcCCCC------CCHHHHHHHHHHHHhCCCeEEeeeccCCCCCCceeEEEeCCCHHHHHHHHHHHHHHH
Confidence 12111 123556789999999999987421 01 233667777666655543
No 122
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.24 E-value=1.4e-11 Score=118.26 Aligned_cols=123 Identities=22% Similarity=0.201 Sum_probs=108.4
Q ss_pred hccCeEeeeccCCCC--CCCCC-CCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCcc-CCcchhcccccCeE
Q 001999 497 WKDTKKLSLFGFPSS--TLPDM-PNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRC-LPPSISRLINLNAL 572 (984)
Q Consensus 497 ~~~~r~l~l~~~~~~--~l~~~-~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~-lp~~i~~l~~L~~L 572 (984)
.++++++.+.+|.+. .+|.. ..+++|+.|++++|.+..+ . .+.++++|++|++++|.++. +|..++.+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-A-NLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-T-TCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-h-hhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 368999999999988 56654 7899999999999999988 3 38999999999999999998 78778889999999
Q ss_pred ecCCCcccccCc--hhhhccCCCcEEEecCccccccch----hhhccCCCCeeecc
Q 001999 573 FLRSCSLLFQLP--KEIRYLQKLEILDVRHTRIQCLPS----EIGQLIKLKCLRVS 622 (984)
Q Consensus 573 ~L~~c~~l~~lp--~~i~~L~~L~~L~l~~~~l~~lp~----~~~~L~~L~~L~l~ 622 (984)
++++|. ++.+| ..++.+++|++|++++|.+..+|. .++.+++|++|+++
T Consensus 94 ~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNK-IKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSC-CCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCc-CCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 999975 67665 789999999999999999998876 68899999999876
No 123
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.24 E-value=6.4e-12 Score=140.29 Aligned_cols=177 Identities=15% Similarity=0.206 Sum_probs=113.8
Q ss_pred eccCCCCC-CCCC-CCcCceeEEEecCcccCCCcc----hHhhcCC-CccEEeccCCCCccC-Ccchhcc-----cccCe
Q 001999 505 LFGFPSST-LPDM-PNCCEILTLIVEGRRLEKLPM----SFFEYMC-HLQLLDLHDTSIRCL-PPSISRL-----INLNA 571 (984)
Q Consensus 505 l~~~~~~~-l~~~-~~~~~L~~L~l~~~~l~~l~~----~~~~~l~-~Lr~L~L~~~~i~~l-p~~i~~l-----~~L~~ 571 (984)
+..+.+.. +|.+ ...++|+.|++++|.+...+. ..|.+++ +|++|+|++|.++.. +..++.+ .+|++
T Consensus 5 ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~ 84 (362)
T 3goz_A 5 LTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTS 84 (362)
T ss_dssp CCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCE
T ss_pred cccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccE
Confidence 33444443 2333 334559999999999998876 5578888 899999999999876 5567765 99999
Q ss_pred EecCCCcccccCchhhh----cc-CCCcEEEecCccccccchh-----hhc-cCCCCeeecccccccCccccCCCCCCcc
Q 001999 572 LFLRSCSLLFQLPKEIR----YL-QKLEILDVRHTRIQCLPSE-----IGQ-LIKLKCLRVSWVENVGNHTHAGAWPGEM 640 (984)
Q Consensus 572 L~L~~c~~l~~lp~~i~----~L-~~L~~L~l~~~~l~~lp~~-----~~~-L~~L~~L~l~~~~~~~~~~l~~~~~~~~ 640 (984)
|+|++|..-...+..++ .+ ++|++|++++|.+...+.. +.. .++|++|+++ +|..... ....
T Consensus 85 L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls-----~N~l~~~--~~~~ 157 (362)
T 3goz_A 85 LNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLR-----GNDLGIK--SSDE 157 (362)
T ss_dssp EECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECT-----TSCGGGS--CHHH
T ss_pred EECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEcc-----CCcCCHH--HHHH
Confidence 99999864334444444 44 8999999999999866542 333 3699999998 5433210 0001
Q ss_pred cchhhhhccc-cccceeeeecCCchhHHhhhhhhhHHHhhcc-CCCceEEEecCC
Q 001999 641 ISSNIISKLC-LLEELIIEVLDPSDRRWKQNVESIAGEIAAL-EQLTTLHFYFPT 693 (984)
Q Consensus 641 ip~~~l~~L~-~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~ 693 (984)
++ ..+..++ +|++|++.++..... ........+... ++|+.|+++.+.
T Consensus 158 l~-~~l~~~~~~L~~L~Ls~n~l~~~----~~~~l~~~l~~~~~~L~~L~Ls~N~ 207 (362)
T 3goz_A 158 LI-QILAAIPANVNSLNLRGNNLASK----NCAELAKFLASIPASVTSLDLSANL 207 (362)
T ss_dssp HH-HHHHTSCTTCCEEECTTSCGGGS----CHHHHHHHHHTSCTTCCEEECTTSC
T ss_pred HH-HHHhcCCccccEeeecCCCCchh----hHHHHHHHHHhCCCCCCEEECCCCC
Confidence 12 1234444 788887776443321 122233344555 477777777554
No 124
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.23 E-value=2.1e-11 Score=125.46 Aligned_cols=125 Identities=16% Similarity=0.188 Sum_probs=110.8
Q ss_pred ccCeEeeeccCCCCCCCC---CCCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCCc-chhcccccCeEe
Q 001999 498 KDTKKLSLFGFPSSTLPD---MPNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLPP-SISRLINLNALF 573 (984)
Q Consensus 498 ~~~r~l~l~~~~~~~l~~---~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~L~~L~ 573 (984)
..++.|.+.+|.+..++. +..+++|+.|++++|.+..++...|.++++|++|+|++|.++.+|. .++.+++|++|+
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 111 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLM 111 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEE
T ss_pred CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEE
Confidence 467899999999988743 5789999999999999999988779999999999999999998865 588999999999
Q ss_pred cCCCcccccCchhhhccCCCcEEEecCcccccc-chhhhccCCCCeeecc
Q 001999 574 LRSCSLLFQLPKEIRYLQKLEILDVRHTRIQCL-PSEIGQLIKLKCLRVS 622 (984)
Q Consensus 574 L~~c~~l~~lp~~i~~L~~L~~L~l~~~~l~~l-p~~~~~L~~L~~L~l~ 622 (984)
|++|......|..+..+++|++|++++|.++.+ |..+..+++|+.|+++
T Consensus 112 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 161 (220)
T 2v70_A 112 LRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLL 161 (220)
T ss_dssp CTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEec
Confidence 999764444477899999999999999999987 6779999999999998
No 125
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.23 E-value=2.7e-11 Score=124.55 Aligned_cols=124 Identities=17% Similarity=0.276 Sum_probs=111.0
Q ss_pred ccCeEeeeccCCCCCCC--CCCCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCCcc-hhcccccCeEec
Q 001999 498 KDTKKLSLFGFPSSTLP--DMPNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLPPS-ISRLINLNALFL 574 (984)
Q Consensus 498 ~~~r~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~-i~~l~~L~~L~L 574 (984)
..++.|.+.+|.+..++ .+..+++|+.|++++|.+..+++..|.++++|++|+|++|.++.+|.. +..+.+|++|+|
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 57999999999998876 468899999999999999998666699999999999999999999775 589999999999
Q ss_pred CCCcccccC-chhhhccCCCcEEEecCccccccchh-hhccCCCCeeecc
Q 001999 575 RSCSLLFQL-PKEIRYLQKLEILDVRHTRIQCLPSE-IGQLIKLKCLRVS 622 (984)
Q Consensus 575 ~~c~~l~~l-p~~i~~L~~L~~L~l~~~~l~~lp~~-~~~L~~L~~L~l~ 622 (984)
++|. ++.+ |..+..+++|++|++++|.++.+|.. +..+++|++|+++
T Consensus 112 ~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 160 (220)
T 2v9t_B 112 NANK-INCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLA 160 (220)
T ss_dssp CSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred CCCC-CCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeC
Confidence 9976 5555 67799999999999999999988865 8899999999998
No 126
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.23 E-value=2.2e-11 Score=135.73 Aligned_cols=145 Identities=21% Similarity=0.182 Sum_probs=79.2
Q ss_pred EeeeccCCCCCCCCCCCcCceeEEEecCcccCCCcchHhh-cCCCccEEeccCCCCccCC-cchhcccccCeEecCCCcc
Q 001999 502 KLSLFGFPSSTLPDMPNCCEILTLIVEGRRLEKLPMSFFE-YMCHLQLLDLHDTSIRCLP-PSISRLINLNALFLRSCSL 579 (984)
Q Consensus 502 ~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~l~~~~~~-~l~~Lr~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~c~~ 579 (984)
.+...++.+..+|.. -.+.++.|++++|.+..++...|. ++++|++|+|++|.++.++ ..+..+.+|++|+|++|.
T Consensus 22 ~l~c~~~~l~~iP~~-~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~- 99 (361)
T 2xot_A 22 ILSCSKQQLPNVPQS-LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH- 99 (361)
T ss_dssp EEECCSSCCSSCCSS-CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-
T ss_pred EEEeCCCCcCccCcc-CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc-
Confidence 455555555555531 123456666666666666555454 5666666666666666553 345666666666666643
Q ss_pred cccCch-hhhccCCCcEEEecCcccccc-chhhhccCCCCeeecccccccCccccCCCCCCcccchhhh---hccccccc
Q 001999 580 LFQLPK-EIRYLQKLEILDVRHTRIQCL-PSEIGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSNII---SKLCLLEE 654 (984)
Q Consensus 580 l~~lp~-~i~~L~~L~~L~l~~~~l~~l-p~~~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l---~~L~~L~~ 654 (984)
++.+|. .+.++++|++|++++|++..+ |..+..+++|++|+++ ++... .+|...+ ..+++|+.
T Consensus 100 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~-----~N~l~-------~l~~~~~~~~~~l~~L~~ 167 (361)
T 2xot_A 100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLS-----QNQIS-------RFPVELIKDGNKLPKLML 167 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC-----SSCCC-------SCCGGGTC----CTTCCE
T ss_pred CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECC-----CCcCC-------eeCHHHhcCcccCCcCCE
Confidence 444433 356666666666666666644 3345666666666665 33222 2444433 44666666
Q ss_pred eeeeec
Q 001999 655 LIIEVL 660 (984)
Q Consensus 655 L~l~~~ 660 (984)
|++.+.
T Consensus 168 L~L~~N 173 (361)
T 2xot_A 168 LDLSSN 173 (361)
T ss_dssp EECCSS
T ss_pred EECCCC
Confidence 666543
No 127
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.22 E-value=1.9e-11 Score=136.25 Aligned_cols=151 Identities=22% Similarity=0.240 Sum_probs=124.6
Q ss_pred hccCeEeeeccCCCCCCCC--CC-CcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCCc-chhcccccCeE
Q 001999 497 WKDTKKLSLFGFPSSTLPD--MP-NCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLPP-SISRLINLNAL 572 (984)
Q Consensus 497 ~~~~r~l~l~~~~~~~l~~--~~-~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~L~~L 572 (984)
...++.|.+++|.+..++. +. .+++|+.|++++|.+..++...|.++++|++|+|++|.++.+|. .+..+.+|++|
T Consensus 38 ~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 117 (361)
T 2xot_A 38 PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVL 117 (361)
T ss_dssp CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEE
Confidence 3568899999999988664 34 88999999999999999987779999999999999999998865 58899999999
Q ss_pred ecCCCcccccCchhhhccCCCcEEEecCccccccchhh----hccCCCCeeecccccccCccccCCCCCCcccchhhhhc
Q 001999 573 FLRSCSLLFQLPKEIRYLQKLEILDVRHTRIQCLPSEI----GQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSNIISK 648 (984)
Q Consensus 573 ~L~~c~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~~----~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~~ 648 (984)
+|++|......|..+.++++|++|++++|.+..+|..+ ..+++|++|+++ ++... .+|...+..
T Consensus 118 ~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~-----~N~l~-------~l~~~~~~~ 185 (361)
T 2xot_A 118 LLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLS-----SNKLK-------KLPLTDLQK 185 (361)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECC-----SSCCC-------CCCHHHHHH
T ss_pred ECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECC-----CCCCC-------ccCHHHhhh
Confidence 99997644444678999999999999999999999875 679999999998 55433 467666777
Q ss_pred cccc--cceeeee
Q 001999 649 LCLL--EELIIEV 659 (984)
Q Consensus 649 L~~L--~~L~l~~ 659 (984)
++.+ +.|++.+
T Consensus 186 l~~~~l~~l~l~~ 198 (361)
T 2xot_A 186 LPAWVKNGLYLHN 198 (361)
T ss_dssp SCHHHHTTEECCS
T ss_pred ccHhhcceEEecC
Confidence 7764 6777765
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.21 E-value=1.9e-11 Score=121.07 Aligned_cols=128 Identities=17% Similarity=0.215 Sum_probs=73.6
Q ss_pred CCcCceeEEEecCcccCCCcchHhhcCC-CccEEeccCCCCccCCcchhcccccCeEecCCCcccccCchhh-hccCCCc
Q 001999 517 PNCCEILTLIVEGRRLEKLPMSFFEYMC-HLQLLDLHDTSIRCLPPSISRLINLNALFLRSCSLLFQLPKEI-RYLQKLE 594 (984)
Q Consensus 517 ~~~~~L~~L~l~~~~l~~l~~~~~~~l~-~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i-~~L~~L~ 594 (984)
..+++|+.|++++|.+..++. +..+. +|++|++++|.++.+ ..++.+++|++|++++|. ++.+|..+ +.+++|+
T Consensus 16 ~~~~~L~~L~l~~n~l~~i~~--~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVIEN--LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLT 91 (176)
T ss_dssp ECTTSCEEEECTTSCCCSCCC--GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSC-CCEECSCHHHHCTTCC
T ss_pred CCcCCceEEEeeCCCCchhHH--hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCc-ccccCcchhhcCCCCC
Confidence 344566666666666665543 23333 666666666666655 446666666666666643 44555433 6666666
Q ss_pred EEEecCccccccch--hhhccCCCCeeecccccccCccccCCCCCCcccchh---hhhccccccceeeeec
Q 001999 595 ILDVRHTRIQCLPS--EIGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSN---IISKLCLLEELIIEVL 660 (984)
Q Consensus 595 ~L~l~~~~l~~lp~--~~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~---~l~~L~~L~~L~l~~~ 660 (984)
+|++++|.+..+|. .++.+++|++|+++ ++.... +|.. .+..+++|+.|++..+
T Consensus 92 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~-----~N~i~~-------~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 92 ELILTNNSLVELGDLDPLASLKSLTYLCIL-----RNPVTN-------KKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp EEECCSCCCCCGGGGGGGGGCTTCCEEECC-----SSGGGG-------STTHHHHHHHHCTTCSEETTEEC
T ss_pred EEECCCCcCCcchhhHhhhcCCCCCEEEec-----CCCCCC-------cHhHHHHHHHHCCccceeCCCcC
Confidence 66666666666665 56666666666666 433321 3322 3566666666666643
No 129
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.20 E-value=2.4e-11 Score=132.41 Aligned_cols=101 Identities=19% Similarity=0.215 Sum_probs=70.0
Q ss_pred CceeEEEecCcccCC-----CcchHhhcCCCccEEeccCCCCcc-CCcch--hcccccCeEecCCCcccccCc----hhh
Q 001999 520 CEILTLIVEGRRLEK-----LPMSFFEYMCHLQLLDLHDTSIRC-LPPSI--SRLINLNALFLRSCSLLFQLP----KEI 587 (984)
Q Consensus 520 ~~L~~L~l~~~~l~~-----l~~~~~~~l~~Lr~L~L~~~~i~~-lp~~i--~~l~~L~~L~L~~c~~l~~lp----~~i 587 (984)
..++.|.+.+..+.. +.. +..+++|++|++++|.+.. .|..+ +.+.+|++|+|++|......| ..+
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~ 141 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALR--VLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ 141 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHH--HHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred cceeEEEEeCCcCCHHHHHHHHH--hcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence 346667776655432 111 2345678889998888874 46666 788888888888876433333 334
Q ss_pred hccCCCcEEEecCccccccc-hhhhccCCCCeeecc
Q 001999 588 RYLQKLEILDVRHTRIQCLP-SEIGQLIKLKCLRVS 622 (984)
Q Consensus 588 ~~L~~L~~L~l~~~~l~~lp-~~~~~L~~L~~L~l~ 622 (984)
..+++|++|++++|.+..+| ..++.+++|++|+++
T Consensus 142 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 177 (310)
T 4glp_A 142 WLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLS 177 (310)
T ss_dssp TBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECC
T ss_pred hhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECC
Confidence 56888888888888888665 457788888888888
No 130
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.19 E-value=2.9e-10 Score=128.04 Aligned_cols=284 Identities=11% Similarity=0.129 Sum_probs=172.4
Q ss_pred CCCCCchHHHHHHHHHHhcc----CCccEEEEEcCCCChHHHHHHHhhhhcccCCCC---CeEEEEEeCCCCCHHHHHHH
Q 001999 153 ASKFPSHKEYVETLEKHLSS----GGLKKICICGPLGVGKTTIMENSHDSVGESGRF---DIIFWVNVNTDGNISDIQEI 225 (984)
Q Consensus 153 ~~~~vgr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F---~~~~wv~vs~~~~~~~i~~~ 225 (984)
+..++||+++++.+.+++.. .....+.|+|++|+||||||+....... ..+ ...+|+......+...+...
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~ 96 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLH--KKFLGKFKHVYINTRQIDTPYRVLAD 96 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHH--HHTCSSCEEEEEEHHHHCSHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHH--HHhcCCceEEEEECCCCCCHHHHHHH
Confidence 36799999999999998873 4567899999999999999999666554 222 25678887766677888888
Q ss_pred HHHHhccCcccc--chHHHHHHHHHHHc--CCcEEEEEECCCCccc------hhhh-cccc--CCCCcEEEEEcCCcccc
Q 001999 226 ILERLKVNAKEL--DNAQRADNISKELK--DKRYVLFLDGVSSEIN------FKEI-GIHD--DHGRGKVVFACRSREFC 292 (984)
Q Consensus 226 i~~~l~~~~~~~--~~~~~~~~l~~~L~--~kr~LlVlDdv~~~~~------~~~~-~~~~--~~~gs~ilvTTR~~~v~ 292 (984)
++..++...... ...+....+.+.+. +++.+||+|+++...+ +..+ .... ...+..+|+||+.....
T Consensus 97 i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~ 176 (386)
T 2qby_A 97 LLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFV 176 (386)
T ss_dssp HTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGG
T ss_pred HHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChH
Confidence 888776543221 12455566666665 4589999999976321 1122 1111 23456778888765432
Q ss_pred c--------cC-CceEEccCCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcC---CCchHHHHHHHHhh------c
Q 001999 293 W--------QA-DDVIHVERLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECG---GMPYMLKLIGKELV------N 354 (984)
Q Consensus 293 ~--------~~-~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~---GlPlai~~~~~~l~------~ 354 (984)
. .. ...+.+++++.++..+++.+.+........--.++.+.|++.++ |.|..+..+..... .
T Consensus 177 ~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~ 256 (386)
T 2qby_A 177 DLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMK 256 (386)
T ss_dssp GGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred hhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcC
Confidence 1 22 25899999999999999998654211111222456777777777 99975443333221 1
Q ss_pred --CccHHHHHHHHHHhhcCCccccccHHHHHHHHHHHHhcChHHHHHHHhhhcccCC-C-CccCHHHHHHHH--hhc--C
Q 001999 355 --QSEVAIWRATVDDLRSTSSEEKKELEEVYRFFKLVYKNLSSVQQHCLLGWAIFPT-G-LEISQDYIIDCW--AAQ--K 426 (984)
Q Consensus 355 --~~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~s~fp~-~-~~i~~~~Li~~W--~ae--g 426 (984)
.-+.+.++.+++.. ....+.-++..+|...+..+..++..-+ + ..+....+.+.. +++ |
T Consensus 257 ~~~i~~~~v~~a~~~~-------------~~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g 323 (386)
T 2qby_A 257 DTKVKEEYVYMAKEEI-------------ERDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLG 323 (386)
T ss_dssp CSSCCHHHHHHHHHHH-------------HHHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHT
T ss_pred CCccCHHHHHHHHHHH-------------hhchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcC
Confidence 13444454444332 1124555677888877776666653211 1 123343333322 111 2
Q ss_pred CCCccCcccchhhHHHHHHHHHhhccccccc
Q 001999 427 FLPRFGKIGDARDTGCLILDKFEKKSLLQKQ 457 (984)
Q Consensus 427 ~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~~ 457 (984)
+. .........+++.|...++++..
T Consensus 324 -~~-----~~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 324 -VE-----AVTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp -CC-----CCCHHHHHHHHHHHHHHTSEEEE
T ss_pred -CC-----CCCHHHHHHHHHHHHhCCCEEEE
Confidence 11 11234567789999999999763
No 131
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.17 E-value=5e-11 Score=117.98 Aligned_cols=124 Identities=17% Similarity=0.247 Sum_probs=103.9
Q ss_pred hhccCeEeeeccCCCCCCCCCCCcC-ceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCCcch-hcccccCeEe
Q 001999 496 EWKDTKKLSLFGFPSSTLPDMPNCC-EILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLPPSI-SRLINLNALF 573 (984)
Q Consensus 496 ~~~~~r~l~l~~~~~~~l~~~~~~~-~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i-~~l~~L~~L~ 573 (984)
...+++.|.+.+|.+..++.+..+. +|+.|++++|.+..++ . +..+++|++|++++|.++.+|+.+ +.+++|++|+
T Consensus 17 ~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~-~-l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD-G-FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp CTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC-C-CCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred CcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCccc-c-cccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence 3467889999999888887766665 8999999999888873 3 788899999999999999887655 8899999999
Q ss_pred cCCCcccccCch--hhhccCCCcEEEecCccccccchh----hhccCCCCeeecc
Q 001999 574 LRSCSLLFQLPK--EIRYLQKLEILDVRHTRIQCLPSE----IGQLIKLKCLRVS 622 (984)
Q Consensus 574 L~~c~~l~~lp~--~i~~L~~L~~L~l~~~~l~~lp~~----~~~L~~L~~L~l~ 622 (984)
+++|. ++.+|. .++.+++|++|++++|.+..+|.. ++.+++|+.|+++
T Consensus 95 L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~ 148 (176)
T 1a9n_A 95 LTNNS-LVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQ 148 (176)
T ss_dssp CCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTE
T ss_pred CCCCc-CCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCC
Confidence 99864 677876 788899999999999998888875 8889999999887
No 132
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.14 E-value=2.1e-11 Score=132.95 Aligned_cols=103 Identities=16% Similarity=0.083 Sum_probs=44.6
Q ss_pred cCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCcc---CC--cchhcccccCeEecCCCcccccCchh----hhc
Q 001999 519 CCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRC---LP--PSISRLINLNALFLRSCSLLFQLPKE----IRY 589 (984)
Q Consensus 519 ~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~---lp--~~i~~l~~L~~L~L~~c~~l~~lp~~----i~~ 589 (984)
+++|++|++++|.+..++...|.++++|++|+|++|.+.. ++ ..++.+++|++|+|++|. ++.+|.. +++
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~ 222 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAAA 222 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhc
Confidence 4444555555444444443334444455555555544331 21 112344445555554432 3333321 234
Q ss_pred cCCCcEEEecCcccccc-chhhhcc---CCCCeeecc
Q 001999 590 LQKLEILDVRHTRIQCL-PSEIGQL---IKLKCLRVS 622 (984)
Q Consensus 590 L~~L~~L~l~~~~l~~l-p~~~~~L---~~L~~L~l~ 622 (984)
+++|++|++++|++... |..+..+ ++|++|+++
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls 259 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLS 259 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECC
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECC
Confidence 44555555555544433 4333333 345555544
No 133
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.13 E-value=2.9e-10 Score=114.16 Aligned_cols=119 Identities=23% Similarity=0.337 Sum_probs=78.3
Q ss_pred eEeeeccCCCCCCCCCCCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCC-cchhcccccCeEecCCCcc
Q 001999 501 KKLSLFGFPSSTLPDMPNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLP-PSISRLINLNALFLRSCSL 579 (984)
Q Consensus 501 r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~c~~ 579 (984)
+.+.+.++.+..+|.. -.++|+.|++++|.+..+|.. |.++++|++|+|++|.++.++ ..+..+.+|++|+|++|.
T Consensus 13 ~~l~~~~~~l~~ip~~-~~~~l~~L~L~~n~i~~ip~~-~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~- 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKG-IPRDVTELYLDGNQFTLVPKE-LSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR- 89 (193)
T ss_dssp TEEECTTSCCSSCCSC-CCTTCCEEECCSSCCCSCCGG-GGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-
T ss_pred CEEEcCCCCCCcCCCC-CCCCCCEEECCCCcCchhHHH-hhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc-
Confidence 3456666666666542 235677777777777777644 677777777777777777664 356677777777777754
Q ss_pred cccCc-hhhhccCCCcEEEecCccccccchh-hhccCCCCeeecc
Q 001999 580 LFQLP-KEIRYLQKLEILDVRHTRIQCLPSE-IGQLIKLKCLRVS 622 (984)
Q Consensus 580 l~~lp-~~i~~L~~L~~L~l~~~~l~~lp~~-~~~L~~L~~L~l~ 622 (984)
++.+| ..++.+++|++|++++|.+..+|.. +..+++|++|+++
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 134 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIG 134 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeC
Confidence 44444 3566777777777777777766654 5667777777776
No 134
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.11 E-value=2.3e-10 Score=133.84 Aligned_cols=132 Identities=25% Similarity=0.320 Sum_probs=101.4
Q ss_pred cCeEeeeccCCCCCCCCCCCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCCcchhcccccCeEecCCCc
Q 001999 499 DTKKLSLFGFPSSTLPDMPNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLPPSISRLINLNALFLRSCS 578 (984)
Q Consensus 499 ~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~ 578 (984)
+++.|.+.+|.+..+|... +++|+.|++++|.+..+| . .+++|++|+|++|.++.+|. ++. +|++|+|++|.
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~ip-~---~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~ 131 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL-PPQITVLEITQNALISLP-E---LPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQ 131 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCSCCC-C---CCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSC
T ss_pred CccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCcccc-c---ccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCc
Confidence 6788888888888877532 478999999988888888 2 36888999999998888887 665 88999998864
Q ss_pred ccccCchhhhccCCCcEEEecCccccccchhhhccCCCCeeecccccccCccccCCCCCCcccchhhhhccccccceeee
Q 001999 579 LLFQLPKEIRYLQKLEILDVRHTRIQCLPSEIGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSNIISKLCLLEELIIE 658 (984)
Q Consensus 579 ~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~~L~~L~~L~l~ 658 (984)
++.+|. .+++|++|++++|.++.+|. .+++|++|+++ +|.. . .+|. +. ++|+.|++.
T Consensus 132 -l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls-----~N~L-~------~lp~--l~--~~L~~L~Ls 188 (571)
T 3cvr_A 132 -LTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVR-----NNQL-T------FLPE--LP--ESLEALDVS 188 (571)
T ss_dssp -CSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECC-----SSCC-S------CCCC--CC--TTCCEEECC
T ss_pred -CCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECC-----CCCC-C------Ccch--hh--CCCCEEECc
Confidence 667877 67889999999998888886 67888899888 5433 3 3554 33 677778777
Q ss_pred ecC
Q 001999 659 VLD 661 (984)
Q Consensus 659 ~~~ 661 (984)
+..
T Consensus 189 ~N~ 191 (571)
T 3cvr_A 189 TNL 191 (571)
T ss_dssp SSC
T ss_pred CCC
Confidence 543
No 135
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.09 E-value=2.5e-10 Score=133.58 Aligned_cols=160 Identities=21% Similarity=0.204 Sum_probs=126.3
Q ss_pred ccCeEeeeccCCCCCCCCCCCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCCcchhcccccCeEecCCC
Q 001999 498 KDTKKLSLFGFPSSTLPDMPNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLPPSISRLINLNALFLRSC 577 (984)
Q Consensus 498 ~~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c 577 (984)
++++.|.+++|.+..+| ..+++|+.|++++|.+..+|. +.+ +|++|+|++|.++.+|. .+++|++|+|++|
T Consensus 80 ~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N 150 (571)
T 3cvr_A 80 PQITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPE--LPA--SLKHLDVDNNQLTMLPE---LPALLEYINADNN 150 (571)
T ss_dssp TTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC--CCT--TCCEEECCSSCCSCCCC---CCTTCCEEECCSS
T ss_pred CCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcch--hhc--CCCEEECCCCcCCCCCC---cCccccEEeCCCC
Confidence 57999999999999888 567999999999999999887 443 89999999999999887 6899999999996
Q ss_pred cccccCchhhhccCCCcEEEecCccccccchhhhccCCCCeeecccccccCccccCCCCCCcccchhhhhc-----cccc
Q 001999 578 SLLFQLPKEIRYLQKLEILDVRHTRIQCLPSEIGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSNIISK-----LCLL 652 (984)
Q Consensus 578 ~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~~-----L~~L 652 (984)
. ++.+|. .+++|++|++++|.++.+|. +. ++|++|+++ +|... .+|. +.. ...|
T Consensus 151 ~-l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls-----~N~L~-------~lp~--~~~~L~~~~~~L 209 (571)
T 3cvr_A 151 Q-LTMLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVS-----TNLLE-------SLPA--VPVRNHHSEETE 209 (571)
T ss_dssp C-CSCCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECC-----SSCCS-------SCCC--CC--------CC
T ss_pred c-cCcCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECc-----CCCCC-------chhh--HHHhhhcccccc
Confidence 5 777887 67899999999999999988 65 899999998 55433 3554 222 1223
Q ss_pred cceeeeecCCchhHHhhhhhhhHHHhhccCCCceEEEecCCcch
Q 001999 653 EELIIEVLDPSDRRWKQNVESIAGEIAALEQLTTLHFYFPTIKC 696 (984)
Q Consensus 653 ~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 696 (984)
+.|++.+.... .++..+..+++|+.|+++.+....
T Consensus 210 ~~L~Ls~N~l~---------~lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 210 IFFRCRENRIT---------HIPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp EEEECCSSCCC---------CCCGGGGGSCTTEEEECCSSSCCH
T ss_pred eEEecCCCcce---------ecCHHHhcCCCCCEEEeeCCcCCC
Confidence 88888864332 355567779999999999887643
No 136
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.09 E-value=2e-10 Score=135.20 Aligned_cols=97 Identities=23% Similarity=0.272 Sum_probs=50.2
Q ss_pred eeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCCcchhcccccCeEecCCCcccccCchhhhccCCCcEEEecCc
Q 001999 522 ILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLPPSISRLINLNALFLRSCSLLFQLPKEIRYLQKLEILDVRHT 601 (984)
Q Consensus 522 L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~~ 601 (984)
|+.|++++|.+..+|. ++++++|++|+|++|.++.+|..++.+++|++|+|++| .++.+| .++++++|++|++++|
T Consensus 443 L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp-~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 443 VRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCNN 518 (567)
T ss_dssp CSEEECTTSCCSSCCC--GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCSS
T ss_pred ceEEEecCCCCCCCcC--ccccccCcEeecCcccccccchhhhcCCCCCEEECCCC-CCCCCc-ccCCCCCCcEEECCCC
Confidence 4444455454444443 45555555555555555555555555555555555553 244444 4555555555555555
Q ss_pred ccccc--chhhhccCCCCeeecc
Q 001999 602 RIQCL--PSEIGQLIKLKCLRVS 622 (984)
Q Consensus 602 ~l~~l--p~~~~~L~~L~~L~l~ 622 (984)
+++.+ |..++.+++|+.|+++
T Consensus 519 ~l~~~~~p~~l~~l~~L~~L~L~ 541 (567)
T 1dce_A 519 RLQQSAAIQPLVSCPRLVLLNLQ 541 (567)
T ss_dssp CCCSSSTTGGGGGCTTCCEEECT
T ss_pred CCCCCCCcHHHhcCCCCCEEEec
Confidence 55544 4555555555555555
No 137
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.09 E-value=2.9e-10 Score=114.12 Aligned_cols=120 Identities=18% Similarity=0.318 Sum_probs=85.4
Q ss_pred eEeeeccCCCCCCCCCCCcCceeEEEecCcccCCCcch-HhhcCCCccEEeccCCCCccC-CcchhcccccCeEecCCCc
Q 001999 501 KKLSLFGFPSSTLPDMPNCCEILTLIVEGRRLEKLPMS-FFEYMCHLQLLDLHDTSIRCL-PPSISRLINLNALFLRSCS 578 (984)
Q Consensus 501 r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~l~~~-~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~c~ 578 (984)
+.+.++++.+..+|.. -..+|+.|++++|.+..++.. +|..+++|++|+|++|.++.+ |..++.+.+|++|+|++|.
T Consensus 11 ~~l~~s~~~l~~ip~~-~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRD-IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp TEEECTTSCCSSCCSC-CCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CEEEcCCCCcCcCccC-CCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence 5677777777776652 123777888888877777653 467788888888888877766 5677778888888888765
Q ss_pred ccccC-chhhhccCCCcEEEecCcccccc-chhhhccCCCCeeecc
Q 001999 579 LLFQL-PKEIRYLQKLEILDVRHTRIQCL-PSEIGQLIKLKCLRVS 622 (984)
Q Consensus 579 ~l~~l-p~~i~~L~~L~~L~l~~~~l~~l-p~~~~~L~~L~~L~l~ 622 (984)
++.+ |..++++++|++|++++|++..+ |..+..+++|++|+++
T Consensus 90 -l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 134 (192)
T 1w8a_A 90 -IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLA 134 (192)
T ss_dssp -CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECT
T ss_pred -CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeC
Confidence 4444 34477778888888888877754 5567777788888777
No 138
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.08 E-value=3.7e-10 Score=113.37 Aligned_cols=121 Identities=20% Similarity=0.330 Sum_probs=102.7
Q ss_pred eEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCCcchhcccccCeEecCCCcccccCc-hhhhccCCCcEEEecCc
Q 001999 523 LTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLPPSISRLINLNALFLRSCSLLFQLP-KEIRYLQKLEILDVRHT 601 (984)
Q Consensus 523 ~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp-~~i~~L~~L~~L~l~~~ 601 (984)
++++++++.+..+|..+ .+.|++|+|++|.++.+|..+..+.+|++|+|++|. ++.++ ..+.++++|++|++++|
T Consensus 13 ~~l~~~~~~l~~ip~~~---~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI---PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSSCCSCC---CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCcCCCCC---CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCc-CCEeCHhHccCCCCCCEEECCCC
Confidence 57889999999999763 368999999999999999999999999999999975 66665 56999999999999999
Q ss_pred cccccch-hhhccCCCCeeecccccccCccccCCCCCCcccchhhhhccccccceeeee
Q 001999 602 RIQCLPS-EIGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSNIISKLCLLEELIIEV 659 (984)
Q Consensus 602 ~l~~lp~-~~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~~L~~L~~L~l~~ 659 (984)
+++.+|. .+..+++|++|+++ ++... .+|.+.+..+++|+.|++.+
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~-----~N~l~-------~~~~~~~~~l~~L~~L~L~~ 135 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLH-----GNDIS-------VVPEGAFNDLSALSHLAIGA 135 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECC-----SSCCC-------BCCTTTTTTCTTCCEEECCS
T ss_pred ccCEeCHHHhCCCCCCCEEECC-----CCCCC-------eeChhhhhcCccccEEEeCC
Confidence 9998876 58899999999998 55443 46766678888888888875
No 139
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.07 E-value=2.5e-09 Score=111.88 Aligned_cols=191 Identities=13% Similarity=0.119 Sum_probs=114.9
Q ss_pred CCCCCchHHHHHHHHHHhccCC-ccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHHHHHhc
Q 001999 153 ASKFPSHKEYVETLEKHLSSGG-LKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEIILERLK 231 (984)
Q Consensus 153 ~~~~vgr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~ 231 (984)
..+++||+..++.+.+++.... .+++.|+|++|+||||+|+...+... ..+.... ........ ...+.....
T Consensus 22 ~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~--~~~~~~~----~~~~~~~~-~~~~~~~~~ 94 (250)
T 1njg_A 22 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN--CETGITA----TPCGVCDN-CREIEQGRF 94 (250)
T ss_dssp GGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHH--CTTCSCS----SCCSCSHH-HHHHHTTCC
T ss_pred HHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc--CCCCCCC----CCCcccHH-HHHHhccCC
Confidence 4568999999999999987643 35889999999999999999655543 2110000 00000000 001110000
Q ss_pred -----cCccccchHHHHHHHHHHH-----cCCcEEEEEECCCCc--cchhhh--ccccCCCCcEEEEEcCCccccc----
Q 001999 232 -----VNAKELDNAQRADNISKEL-----KDKRYVLFLDGVSSE--INFKEI--GIHDDHGRGKVVFACRSREFCW---- 293 (984)
Q Consensus 232 -----~~~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~--~~~~~~--~~~~~~~gs~ilvTTR~~~v~~---- 293 (984)
..............+.+.+ .+++.+||+||++.. ..+..+ .+.....+..+|+||+......
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~ 174 (250)
T 1njg_A 95 VDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTIL 174 (250)
T ss_dssp SSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHH
T ss_pred cceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHH
Confidence 0000000111122222222 356899999999763 233333 1223455788888887654322
Q ss_pred cCCceEEccCCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCCchHHHHHHHHh
Q 001999 294 QADDVIHVERLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGMPYMLKLIGKEL 352 (984)
Q Consensus 294 ~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~~~~~l 352 (984)
.....+.+.+++.++..+++.+.+.... ..--.+..+.|++.|+|.|..+..+...+
T Consensus 175 ~r~~~i~l~~l~~~e~~~~l~~~~~~~~--~~~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 175 SRCLQFHLKALDVEQIRHQLEHILNEEH--IAHEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp TTSEEEECCCCCHHHHHHHHHHHHHHTT--CCBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhhhccCCCCCHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4457899999999999999998775431 11124567899999999999888776544
No 140
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.07 E-value=1.9e-10 Score=139.70 Aligned_cols=151 Identities=25% Similarity=0.299 Sum_probs=76.6
Q ss_pred ccCeEeeeccCCCCCCCC-CCCcCceeEE-----EecCcccCCCcchHhhcCCCccEEeccCCCCccCCcchhcccccCe
Q 001999 498 KDTKKLSLFGFPSSTLPD-MPNCCEILTL-----IVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLPPSISRLINLNA 571 (984)
Q Consensus 498 ~~~r~l~l~~~~~~~l~~-~~~~~~L~~L-----~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~ 571 (984)
..++++.+.++.+...+. ......|+.+ ++.+|.+. ++...|..+..|++|+|++|.+..+|..++.+.+|++
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~ 251 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTR 251 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSC
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCE
Confidence 346666766665554332 1122222222 22233333 3334467777777777777777777777777777777
Q ss_pred EecCCCcccccCchhhhccCCCcEEEecCccccccchhhhccCCCCeeecccccccCccccCCCCCCcccchhhhhcccc
Q 001999 572 LFLRSCSLLFQLPKEIRYLQKLEILDVRHTRIQCLPSEIGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSNIISKLCL 651 (984)
Q Consensus 572 L~L~~c~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~~L~~ 651 (984)
|+|++|. ++.+|..+++|++|++|+|++|.++.+|..++.|++|++|+++ +|.. . .+|.. +++|++
T Consensus 252 L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~-----~N~l-~------~lp~~-~~~l~~ 317 (727)
T 4b8c_D 252 LYLNGNS-LTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFF-----DNMV-T------TLPWE-FGNLCN 317 (727)
T ss_dssp CBCTTSC-CSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECC-----SSCC-C------CCCSS-TTSCTT
T ss_pred EEeeCCc-CcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECC-----CCCC-C------ccChh-hhcCCC
Confidence 7777753 5577777777777777777777777777777777777777776 4432 2 36655 777777
Q ss_pred ccceeeeecCCc
Q 001999 652 LEELIIEVLDPS 663 (984)
Q Consensus 652 L~~L~l~~~~~~ 663 (984)
|+.|++.+....
T Consensus 318 L~~L~L~~N~l~ 329 (727)
T 4b8c_D 318 LQFLGVEGNPLE 329 (727)
T ss_dssp CCCEECTTSCCC
T ss_pred ccEEeCCCCccC
Confidence 777777754443
No 141
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.06 E-value=7.4e-10 Score=109.60 Aligned_cols=121 Identities=21% Similarity=0.379 Sum_probs=91.4
Q ss_pred CeEeeeccCCCCCCCCCCCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCCcc-hhcccccCeEecCCCc
Q 001999 500 TKKLSLFGFPSSTLPDMPNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLPPS-ISRLINLNALFLRSCS 578 (984)
Q Consensus 500 ~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~c~ 578 (984)
.+.+.+.++.+..+|. .-.++|+.|++++|.+..++...|.++++|++|++++|.++.+|.. ++.+.+|++|++++|.
T Consensus 9 ~~~l~~~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp TTEEECCSSCCSSCCT-TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEecCCCCccCCC-CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 3456677777777663 2346788888888888888777678888888888888888877654 5788888888888854
Q ss_pred ccccCchh-hhccCCCcEEEecCccccccchh-hhccCCCCeeecc
Q 001999 579 LLFQLPKE-IRYLQKLEILDVRHTRIQCLPSE-IGQLIKLKCLRVS 622 (984)
Q Consensus 579 ~l~~lp~~-i~~L~~L~~L~l~~~~l~~lp~~-~~~L~~L~~L~l~ 622 (984)
++.+|.. ++.+++|++|++++|.+..+|.. +..+++|++|+++
T Consensus 88 -l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 132 (177)
T 2o6r_A 88 -LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 132 (177)
T ss_dssp -CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred -ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEec
Confidence 5666554 67788888888888888877766 4678888888887
No 142
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.05 E-value=5.5e-10 Score=131.41 Aligned_cols=120 Identities=18% Similarity=0.192 Sum_probs=105.8
Q ss_pred cCeEeeeccCCCCCCCCCCCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCCcchhcccccCeEecCCCc
Q 001999 499 DTKKLSLFGFPSSTLPDMPNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLPPSISRLINLNALFLRSCS 578 (984)
Q Consensus 499 ~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~ 578 (984)
.++.|.+++|.+..+|.+..+++|+.|++++|.+..+|.. ++++++|++|+|++|.++.+| .++.+++|++|+|++|.
T Consensus 442 ~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~ 519 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNR 519 (567)
T ss_dssp TCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGG-GGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSC
T ss_pred CceEEEecCCCCCCCcCccccccCcEeecCcccccccchh-hhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCC
Confidence 5889999999999999888899999999999999999886 899999999999999999998 79999999999999965
Q ss_pred ccccC--chhhhccCCCcEEEecCccccccchhh----hccCCCCeeec
Q 001999 579 LLFQL--PKEIRYLQKLEILDVRHTRIQCLPSEI----GQLIKLKCLRV 621 (984)
Q Consensus 579 ~l~~l--p~~i~~L~~L~~L~l~~~~l~~lp~~~----~~L~~L~~L~l 621 (984)
++.+ |..++.+++|++|++++|.+..+|..+ ..+++|+.|++
T Consensus 520 -l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 520 -LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp -CCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred -CCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 6666 899999999999999999998877543 34788888764
No 143
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.03 E-value=4.6e-10 Score=112.63 Aligned_cols=123 Identities=21% Similarity=0.247 Sum_probs=101.0
Q ss_pred eEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCCcc--hhcccccCeEecCCCcccccCchhhhccCCCcEEEecC
Q 001999 523 LTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLPPS--ISRLINLNALFLRSCSLLFQLPKEIRYLQKLEILDVRH 600 (984)
Q Consensus 523 ~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~--i~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~ 600 (984)
++++++++.+..+|..++ ..|++|++++|.++.++.. ++.+++|++|+|++|......|..++++++|++|++++
T Consensus 11 ~~l~~s~~~l~~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 689999999999998632 3899999999999988753 89999999999999764444478899999999999999
Q ss_pred ccccccchh-hhccCCCCeeecccccccCccccCCCCCCcccchhhhhccccccceeeeec
Q 001999 601 TRIQCLPSE-IGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSNIISKLCLLEELIIEVL 660 (984)
Q Consensus 601 ~~l~~lp~~-~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~~L~~L~~L~l~~~ 660 (984)
|+++.+|.. +..+++|++|+++ ++.... ++...+..+++|+.|++.+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~-----~N~l~~-------~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLY-----DNQISC-------VMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECC-----SSCCCE-------ECTTSSTTCTTCCEEECTTC
T ss_pred CcCCccCHHHhcCCCCCCEEECC-----CCcCCe-------eCHHHhhcCCCCCEEEeCCC
Confidence 999987765 8899999999998 554433 43345788888888888753
No 144
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.03 E-value=4.8e-09 Score=107.98 Aligned_cols=182 Identities=13% Similarity=0.122 Sum_probs=116.1
Q ss_pred CCCCCchHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHhhhhcccCCCC-CeEEEEEeCCCCCHHHHHHHHHHHhc
Q 001999 153 ASKFPSHKEYVETLEKHLSSGGLKKICICGPLGVGKTTIMENSHDSVGESGRF-DIIFWVNVNTDGNISDIQEIILERLK 231 (984)
Q Consensus 153 ~~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F-~~~~wv~vs~~~~~~~i~~~i~~~l~ 231 (984)
..+++|+++.++.+.+++.....+.+.|+|++|+|||++|+...+.+.. ..+ ...+.+..+.......+...+.....
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (226)
T 2chg_A 16 LDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFG-ENWRDNFIEMNASDERGIDVVRHKIKEFAR 94 (226)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHG-GGGGGGEEEEETTCTTCHHHHHHHHHHHHT
T ss_pred HHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhc-cccccceEEeccccccChHHHHHHHHHHhc
Confidence 3568999999999999998766666999999999999999996555421 112 12344444443333332222211111
Q ss_pred cCccccchHHHHHHHHHHHcCCcEEEEEECCCCcc--chhhh--ccccCCCCcEEEEEcCCccccc----cCCceEEccC
Q 001999 232 VNAKELDNAQRADNISKELKDKRYVLFLDGVSSEI--NFKEI--GIHDDHGRGKVVFACRSREFCW----QADDVIHVER 303 (984)
Q Consensus 232 ~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~--~~~~~--~~~~~~~gs~ilvTTR~~~v~~----~~~~~~~l~~ 303 (984)
... .-.+++.+||+||++... ....+ .+.....+.++|+||+...... .....+.+.+
T Consensus 95 ~~~--------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~ 160 (226)
T 2chg_A 95 TAP--------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKP 160 (226)
T ss_dssp SCC--------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCC
T ss_pred ccC--------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecCC
Confidence 000 002578999999997642 22222 1223455778888887654322 3445899999
Q ss_pred CChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCCchHHHHHHHH
Q 001999 304 LSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGMPYMLKLIGKE 351 (984)
Q Consensus 304 L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~~~~~ 351 (984)
++.++..+++.+.+..... .--.+..+.|++.++|.|..+..+...
T Consensus 161 ~~~~~~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~g~~r~l~~~l~~ 206 (226)
T 2chg_A 161 VPKEAMKKRLLEICEKEGV--KITEDGLEALIYISGGDFRKAINALQG 206 (226)
T ss_dssp CCHHHHHHHHHHHHHHHTC--CBCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 9999999999987753211 112456788999999999865554443
No 145
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.02 E-value=3.4e-10 Score=137.53 Aligned_cols=105 Identities=25% Similarity=0.233 Sum_probs=91.8
Q ss_pred CCCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCCcchhcccccCeEecCCCcccccCchhhhccCCCcE
Q 001999 516 MPNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLPPSISRLINLNALFLRSCSLLFQLPKEIRYLQKLEI 595 (984)
Q Consensus 516 ~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~ 595 (984)
+..+++|+.|++++|.+..+|.. +.++++|++|+|++|.++.+|..|++|.+|++|+|++|. ++.+|..+++|++|++
T Consensus 220 ~~~l~~L~~L~Ls~n~l~~l~~~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~ 297 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIFNISAN-IFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLKY 297 (727)
T ss_dssp --CCCCCCEEECTTSCCSCCCGG-GGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTCSE
T ss_pred hccCCCCcEEECCCCCCCCCChh-hcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCCCE
Confidence 46678899999999999888887 448899999999999999899889999999999999965 6788999999999999
Q ss_pred EEecCccccccchhhhccCCCCeeecc
Q 001999 596 LDVRHTRIQCLPSEIGQLIKLKCLRVS 622 (984)
Q Consensus 596 L~l~~~~l~~lp~~~~~L~~L~~L~l~ 622 (984)
|+|++|.+..+|..++.|++|++|+++
T Consensus 298 L~L~~N~l~~lp~~~~~l~~L~~L~L~ 324 (727)
T 4b8c_D 298 FYFFDNMVTTLPWEFGNLCNLQFLGVE 324 (727)
T ss_dssp EECCSSCCCCCCSSTTSCTTCCCEECT
T ss_pred EECCCCCCCccChhhhcCCCccEEeCC
Confidence 999999999999889999999999998
No 146
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.01 E-value=6.8e-11 Score=119.49 Aligned_cols=141 Identities=22% Similarity=0.232 Sum_probs=76.2
Q ss_pred cCCCcchHhhcCCCccEEeccCCCCccCCcchhcccccCeEecCCCcccccCchhhhccCCCcEEEecCccccccchhhh
Q 001999 532 LEKLPMSFFEYMCHLQLLDLHDTSIRCLPPSISRLINLNALFLRSCSLLFQLPKEIRYLQKLEILDVRHTRIQCLPSEIG 611 (984)
Q Consensus 532 l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~~~ 611 (984)
++.+|.. +..+++|++|++++|.++.+| .++.+++|++|++++| .++.+|..++.+++|++|++++|++..+| .++
T Consensus 37 l~~l~~~-~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~ 112 (198)
T 1ds9_A 37 IEKMDAT-LSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYNQIASLS-GIE 112 (198)
T ss_dssp CCCCHHH-HHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEEECCCHH-HHH
T ss_pred HhhhhHH-HhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcCCcCCcCC-ccc
Confidence 4444443 566666666666666666665 5666666666666664 35566666666666666666666666655 466
Q ss_pred ccCCCCeeecccccccCccccCCCCCCcccch-hhhhccccccceeeeecCCchhHH--hhhhhhhHHHhhccCCCceEE
Q 001999 612 QLIKLKCLRVSWVENVGNHTHAGAWPGEMISS-NIISKLCLLEELIIEVLDPSDRRW--KQNVESIAGEIAALEQLTTLH 688 (984)
Q Consensus 612 ~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~-~~l~~L~~L~~L~l~~~~~~~~~~--~~~~~~~~~~l~~l~~L~~L~ 688 (984)
.+++|++|+++ ++... .++. ..+..+++|+.|++.+.......- +.........+..+++|+.|+
T Consensus 113 ~l~~L~~L~l~-----~N~i~-------~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 113 KLVNLRVLYMS-----NNKIT-------NWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHSSEEEES-----EEECC-------CHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred cCCCCCEEECC-----CCcCC-------chhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 66666666666 33222 1222 235566666666665422111000 000111223356777777775
No 147
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.97 E-value=3.7e-11 Score=121.43 Aligned_cols=133 Identities=20% Similarity=0.213 Sum_probs=108.3
Q ss_pred CCCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCCcchhcccccCeEecCCCcccccCchhhhccCCCcE
Q 001999 516 MPNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLPPSISRLINLNALFLRSCSLLFQLPKEIRYLQKLEI 595 (984)
Q Consensus 516 ~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~ 595 (984)
+..+++|++|++++|.+..+| . +.++++|++|++++|.++.+|..++.+++|++|++++| .++.+| .++++++|++
T Consensus 44 ~~~l~~L~~L~ls~n~l~~l~-~-~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~-~~~~l~~L~~ 119 (198)
T 1ds9_A 44 LSTLKACKHLALSTNNIEKIS-S-LSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN-QIASLS-GIEKLVNLRV 119 (198)
T ss_dssp HHHTTTCSEEECSEEEESCCC-C-HHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE-ECCCHH-HHHHHHHSSE
T ss_pred HhcCCCCCEEECCCCCCcccc-c-cccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCC-cCCcCC-ccccCCCCCE
Confidence 467889999999999999988 4 89999999999999999999998889999999999996 577777 6999999999
Q ss_pred EEecCccccccch--hhhccCCCCeeecccccccCccccCCCCCC----cccchhhhhccccccceeee
Q 001999 596 LDVRHTRIQCLPS--EIGQLIKLKCLRVSWVENVGNHTHAGAWPG----EMISSNIISKLCLLEELIIE 658 (984)
Q Consensus 596 L~l~~~~l~~lp~--~~~~L~~L~~L~l~~~~~~~~~~l~~~~~~----~~ip~~~l~~L~~L~~L~l~ 658 (984)
|++++|.+..+|. .+..+++|++|+++ ++..... .+. ..++...+..+++|+.|+..
T Consensus 120 L~l~~N~i~~~~~~~~l~~l~~L~~L~l~-----~N~l~~~-~~~~~~~~~~~~~~~~~l~~L~~Ld~~ 182 (198)
T 1ds9_A 120 LYMSNNKITNWGEIDKLAALDKLEDLLLA-----GNPLYND-YKENNATSEYRIEVVKRLPNLKKLDGM 182 (198)
T ss_dssp EEESEEECCCHHHHHHHTTTTTCSEEEEC-----SCHHHHH-HHTTTTHHHHHHHHHHHCSSCSEECCG
T ss_pred EECCCCcCCchhHHHHHhcCCCCCEEEec-----CCccccc-cccccchHHHHHHHHHhCCCcEEECCc
Confidence 9999999998775 68999999999998 5533220 000 01222347889999988743
No 148
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.92 E-value=2.4e-08 Score=109.30 Aligned_cols=266 Identities=14% Similarity=0.080 Sum_probs=148.5
Q ss_pred CCCCCCchHHHHHHHHHHhcc-----CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHH
Q 001999 152 HASKFPSHKEYVETLEKHLSS-----GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEII 226 (984)
Q Consensus 152 ~~~~~vgr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i 226 (984)
...+++|++..+..+.+++.. .....+.|+|++|+|||++|+...+... .. .+++..+.......+.
T Consensus 10 ~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~--~~---~~~~~~~~~~~~~~l~--- 81 (324)
T 1hqc_A 10 TLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELG--VN---LRVTSGPAIEKPGDLA--- 81 (324)
T ss_dssp STTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHT--CC---EEEECTTTCCSHHHHH---
T ss_pred cHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhC--CC---EEEEeccccCChHHHH---
Confidence 446799999999988887753 3446788999999999999999776654 32 2344433322222211
Q ss_pred HHHhccCccccchHHHHHHHHHHHc---CCcEEEEEECCCCcc--chhhh-------ccc---c----------CCCCcE
Q 001999 227 LERLKVNAKELDNAQRADNISKELK---DKRYVLFLDGVSSEI--NFKEI-------GIH---D----------DHGRGK 281 (984)
Q Consensus 227 ~~~l~~~~~~~~~~~~~~~l~~~L~---~kr~LlVlDdv~~~~--~~~~~-------~~~---~----------~~~gs~ 281 (984)
..+. .+..+|++||+.... ....+ .+. . ...+..
T Consensus 82 ---------------------~~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (324)
T 1hqc_A 82 ---------------------AILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFT 140 (324)
T ss_dssp ---------------------HHHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCE
T ss_pred ---------------------HHHHHhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEE
Confidence 1221 356688899987642 11111 000 0 012345
Q ss_pred EEEEcCCcc-ccc----cCCceEEccCCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCCchHHHHHHHHhhcC-
Q 001999 282 VVFACRSRE-FCW----QADDVIHVERLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGMPYMLKLIGKELVNQ- 355 (984)
Q Consensus 282 ilvTTR~~~-v~~----~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~~~~~l~~~- 355 (984)
+|.||.... +.. .....+.+.+++.++...++.+.+.... ..--.+..+.+++.++|.|..+..+...+...
T Consensus 141 ~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~--~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a 218 (324)
T 1hqc_A 141 LIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLG--VRITEEAALEIGRRSRGTMRVAKRLFRRVRDFA 218 (324)
T ss_dssp EEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTT--CCCCHHHHHHHHHHSCSCHHHHHHHHHHHTTTS
T ss_pred EEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 666665443 221 3336899999999999999988875431 11124577889999999998877766554321
Q ss_pred -------ccHHHHHHHHHHhhcCCccccccHH-HHHHHHHHHHhcChHHHHHHHhhhcccCCCCccCHHHHHH----HHh
Q 001999 356 -------SEVAIWRATVDDLRSTSSEEKKELE-EVYRFFKLVYKNLSSVQQHCLLGWAIFPTGLEISQDYIID----CWA 423 (984)
Q Consensus 356 -------~~~~~w~~~l~~l~~~~~~~~~~~~-~i~~~l~~sy~~L~~~~k~cfl~~s~fp~~~~i~~~~Li~----~W~ 423 (984)
.+.+....++..+..... .....+ .+...+.-.|..=+......-..++ +++..+.+ +-+
T Consensus 219 ~~~~~~~i~~~~~~~~~~~~~~~~~-~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lg-------i~~~tl~~~l~~~~i 290 (324)
T 1hqc_A 219 QVAGEEVITRERALEALAALGLDEL-GLEKRDREILEVLILRFGGGPVGLATLATALS-------EDPGTLEEVHEPYLI 290 (324)
T ss_dssp TTTSCSCCCHHHHHHHHHHHTCCTT-CCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTT-------SCHHHHHHHTHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHhccccc-CCCHHHHHHHHHHHHHhcCCCchHHHHHHHhC-------CCHHHHHHHHhHHHH
Confidence 234444444444321110 011111 1222222222211111222222222 34444433 245
Q ss_pred hcCCCCccCcccchhhHHHHHHH-HHhhcccccc
Q 001999 424 AQKFLPRFGKIGDARDTGCLILD-KFEKKSLLQK 456 (984)
Q Consensus 424 aeg~i~~~~~~~~~~~~~~~~~~-~L~~~~ll~~ 456 (984)
..|++.....+....+.|..||+ ++.+|+|+||
T Consensus 291 ~~~li~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 291 RQGLLKRTPRGRVPTELAYRHLGYPPPVGPLLEP 324 (324)
T ss_dssp HTTSEEEETTEEEECHHHHHHTTCCCCC------
T ss_pred HhcchhcCCccceecHHHHHHHhcCCCCCCCCCC
Confidence 67999876667788899999998 9999999986
No 149
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.91 E-value=3.3e-09 Score=104.36 Aligned_cols=96 Identities=24% Similarity=0.369 Sum_probs=58.3
Q ss_pred eEEEecCcccCCCcchHhhcCCCccEEeccCCCCccC-CcchhcccccCeEecCCCcccccCchh-hhccCCCcEEEecC
Q 001999 523 LTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCL-PPSISRLINLNALFLRSCSLLFQLPKE-IRYLQKLEILDVRH 600 (984)
Q Consensus 523 ~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~c~~l~~lp~~-i~~L~~L~~L~l~~ 600 (984)
+.++++++.+..+|..+ .++|++|+|++|.++.+ |..++.+++|++|+|++| .++.+|.. ++++++|++|++++
T Consensus 15 ~~l~~~~n~l~~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCCccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCC
Confidence 45566666666666542 25666666666666655 445666666666666664 35555544 35666666666666
Q ss_pred ccccccchh-hhccCCCCeeecc
Q 001999 601 TRIQCLPSE-IGQLIKLKCLRVS 622 (984)
Q Consensus 601 ~~l~~lp~~-~~~L~~L~~L~l~ 622 (984)
|+++.+|.. +..+++|++|+++
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~ 113 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLY 113 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECC
T ss_pred CccceeCHHHhccccCCCEEEeC
Confidence 666666654 5666666666666
No 150
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.89 E-value=5.6e-09 Score=103.17 Aligned_cols=124 Identities=23% Similarity=0.371 Sum_probs=102.2
Q ss_pred eeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCCc-chhcccccCeEecCCCcccccCchh-hhccCCCcEEEec
Q 001999 522 ILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLPP-SISRLINLNALFLRSCSLLFQLPKE-IRYLQKLEILDVR 599 (984)
Q Consensus 522 L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~~-i~~L~~L~~L~l~ 599 (984)
.+.++++++.+..+|..+ .++|++|++++|.++.+|. .++.+.+|++|++++|. ++.+|.. ++.+++|++|+++
T Consensus 9 ~~~l~~~~~~l~~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TTEEECCSSCCSSCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCCccCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCc-ceEeChhHccCCCccCEEECC
Confidence 467888999999998653 4689999999999998865 46899999999999964 6777654 6899999999999
Q ss_pred Cccccccchh-hhccCCCCeeecccccccCccccCCCCCCcccchhhhhccccccceeeeecC
Q 001999 600 HTRIQCLPSE-IGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSNIISKLCLLEELIIEVLD 661 (984)
Q Consensus 600 ~~~l~~lp~~-~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~~L~~L~~L~l~~~~ 661 (984)
+|.++.+|.. +..+++|++|+++ ++.. . .+|...+..+++|+.|++.+..
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~-----~N~l-~------~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALD-----TNQL-K------SVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECC-----SSCC-S------CCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCccccCHHHhhCCcccCEEECc-----CCcc-e------EeCHHHhcCCcccCEEEecCCC
Confidence 9999988876 6899999999998 5543 3 4666667888899998887643
No 151
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.83 E-value=9.6e-09 Score=100.61 Aligned_cols=96 Identities=26% Similarity=0.366 Sum_probs=52.3
Q ss_pred eEEEecCcccCCCcchHhhcCCCccEEeccCCCCccC-CcchhcccccCeEecCCCcccccCchh-hhccCCCcEEEecC
Q 001999 523 LTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCL-PPSISRLINLNALFLRSCSLLFQLPKE-IRYLQKLEILDVRH 600 (984)
Q Consensus 523 ~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~c~~l~~lp~~-i~~L~~L~~L~l~~ 600 (984)
++++++++.+..+|..+ .+.|++|+|++|.++.+ |..+..+.+|++|+|++|. ++.+|.. +.++++|++|++++
T Consensus 12 ~~l~~s~n~l~~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TEEECTTSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCCCEEECCC
Confidence 44555555555555442 24555566666655555 3345555566666665543 4444443 35556666666666
Q ss_pred ccccccchh-hhccCCCCeeecc
Q 001999 601 TRIQCLPSE-IGQLIKLKCLRVS 622 (984)
Q Consensus 601 ~~l~~lp~~-~~~L~~L~~L~l~ 622 (984)
|+++.+|.. +..+++|++|+++
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~ 110 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLL 110 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECC
T ss_pred CccCEeCHHHhcCCCCCCEEEeC
Confidence 666555543 5556666666665
No 152
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.82 E-value=4.6e-09 Score=115.29 Aligned_cols=102 Identities=15% Similarity=0.068 Sum_probs=62.2
Q ss_pred ccccCeeEEcccCCceEEecCCCCCcccCCCcceeecccccccccccccccccCcccccc-eeeecccccccccCcHHHH
Q 001999 790 LVRLQACVIEDCNEMTSIIDGNHRGVVPFQGLNNLHIKNLPKLMHIWVGPIASGSLNSLR-TLRVKICHSIKTLFSKEMV 868 (984)
Q Consensus 790 l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~-~L~l~~c~~L~~l~~~~~l 868 (984)
+++|+.|+++++ .++.|+...+. .+++|++|.|.+. ++.|....+ ..+++|+ .|.+.+ +++.+ +...+
T Consensus 225 ~~~L~~l~L~~n-~i~~I~~~aF~---~~~~L~~l~l~~n--i~~I~~~aF--~~~~~L~~~l~l~~--~l~~I-~~~aF 293 (329)
T 3sb4_A 225 MPNLVSLDISKT-NATTIPDFTFA---QKKYLLKIKLPHN--LKTIGQRVF--SNCGRLAGTLELPA--SVTAI-EFGAF 293 (329)
T ss_dssp CTTCCEEECTTB-CCCEECTTTTT---TCTTCCEEECCTT--CCEECTTTT--TTCTTCCEEEEECT--TCCEE-CTTTT
T ss_pred cCCCeEEECCCC-CcceecHhhhh---CCCCCCEEECCcc--cceehHHHh--hCChhccEEEEEcc--cceEE-chhhh
Confidence 567777777753 36666654432 3467777777652 555433322 4677787 888876 56666 44667
Q ss_pred hhcccccEEeecccchhHHHhhcCcccccCCCCcccEee
Q 001999 869 AQLNELQDLQVEDCQMIEEIVEAGTVLAIGEFPKLKTLE 907 (984)
Q Consensus 869 ~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~L~~L~ 907 (984)
..+++|++|+++.+.. +.+. ...+.++++|+.|+
T Consensus 294 ~~c~~L~~l~l~~n~i-~~I~----~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 294 MGCDNLRYVLATGDKI-TTLG----DELFGNGVPSKLIY 327 (329)
T ss_dssp TTCTTEEEEEECSSCC-CEEC----TTTTCTTCCCCEEE
T ss_pred hCCccCCEEEeCCCcc-Cccc----hhhhcCCcchhhhc
Confidence 7888888888865432 2221 12456677777765
No 153
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.82 E-value=8.2e-09 Score=101.46 Aligned_cols=111 Identities=18% Similarity=0.273 Sum_probs=87.3
Q ss_pred eEeeeccCCCCCCCCCCCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCCcc-hhcccccCeEecCCCcc
Q 001999 501 KKLSLFGFPSSTLPDMPNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLPPS-ISRLINLNALFLRSCSL 579 (984)
Q Consensus 501 r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~c~~ 579 (984)
+.+.+.++.+..+|... .++|+.|++++|.+..+++..|.++++|++|+|++|.++.+|.. +..+.+|++|+|++| .
T Consensus 15 ~~l~~~~n~l~~iP~~~-~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N-~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI-PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN-H 92 (174)
T ss_dssp SEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-C
T ss_pred cEEEeCCCCCCccCCCc-CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC-c
Confidence 56777888887777532 37888999998888888776688888999999999988888765 578889999999885 4
Q ss_pred cccCchh-hhccCCCcEEEecCccccccchhhhcc
Q 001999 580 LFQLPKE-IRYLQKLEILDVRHTRIQCLPSEIGQL 613 (984)
Q Consensus 580 l~~lp~~-i~~L~~L~~L~l~~~~l~~lp~~~~~L 613 (984)
++.+|.. ++++++|++|++++|.+...|..+..+
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~~~~l 127 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWDCECRDIMYL 127 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBCTTBGGGHHH
T ss_pred cceeCHHHhccccCCCEEEeCCCCcccccccHHHH
Confidence 6777765 888889999999988888766544443
No 154
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.78 E-value=1.3e-08 Score=99.68 Aligned_cols=106 Identities=20% Similarity=0.299 Sum_probs=80.2
Q ss_pred CeEeeeccCCCCCCCCCCCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCCcc-hhcccccCeEecCCCc
Q 001999 500 TKKLSLFGFPSSTLPDMPNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLPPS-ISRLINLNALFLRSCS 578 (984)
Q Consensus 500 ~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~c~ 578 (984)
.+.+.++++.+..+|... .++|+.|++++|.+..+++..|.++++|++|+|++|.++.+|.. +..+.+|++|+|++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N- 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI-PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN- 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-
T ss_pred CCEEEeCCCCcCccCccC-CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC-
Confidence 456777788777777532 37788888888888888666688888888888888888887664 578888888888885
Q ss_pred ccccCch-hhhccCCCcEEEecCccccccc
Q 001999 579 LLFQLPK-EIRYLQKLEILDVRHTRIQCLP 607 (984)
Q Consensus 579 ~l~~lp~-~i~~L~~L~~L~l~~~~l~~lp 607 (984)
.++.+|. .++++++|++|++++|.+...+
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 4666665 4778888888888888776444
No 155
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.77 E-value=5.1e-08 Score=106.61 Aligned_cols=180 Identities=16% Similarity=0.228 Sum_probs=113.6
Q ss_pred CCCCCchHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHhhhhcccCCCC-CeEEEEEeCCCCCHHHHHHHHHHHhc
Q 001999 153 ASKFPSHKEYVETLEKHLSSGGLKKICICGPLGVGKTTIMENSHDSVGESGRF-DIIFWVNVNTDGNISDIQEIILERLK 231 (984)
Q Consensus 153 ~~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F-~~~~wv~vs~~~~~~~i~~~i~~~l~ 231 (984)
..+++|++..++.+.+++..+..+.+.++|++|+||||+|+...+.+.. ..+ ...+++..++......+ +++++.+.
T Consensus 20 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~-~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~ 97 (323)
T 1sxj_B 20 LSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLG-RSYADGVLELNASDDRGIDVV-RNQIKHFA 97 (323)
T ss_dssp GGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHG-GGHHHHEEEECTTSCCSHHHH-HTHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcC-CcccCCEEEecCccccChHHH-HHHHHHHH
Confidence 4678999999999999998876666999999999999999996655420 111 12344444443332222 22222211
Q ss_pred cCccccchHHHHHHHHHHH-cCCcEEEEEECCCCcc--chhhh--ccccCCCCcEEEEEcCCcccc-c---cCCceEEcc
Q 001999 232 VNAKELDNAQRADNISKEL-KDKRYVLFLDGVSSEI--NFKEI--GIHDDHGRGKVVFACRSREFC-W---QADDVIHVE 302 (984)
Q Consensus 232 ~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~~--~~~~~--~~~~~~~gs~ilvTTR~~~v~-~---~~~~~~~l~ 302 (984)
.... .+ .+++.++|+||++... .+..+ .+.....++.+|+||+...-. . .....+++.
T Consensus 98 ~~~~-------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~ 164 (323)
T 1sxj_B 98 QKKL-------------HLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYS 164 (323)
T ss_dssp HBCC-------------CCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECC
T ss_pred hccc-------------cCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEeec
Confidence 0000 01 3568999999997642 23222 122334567888887664322 2 445689999
Q ss_pred CCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCCchH-HHHHH
Q 001999 303 RLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGMPYM-LKLIG 349 (984)
Q Consensus 303 ~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~GlPla-i~~~~ 349 (984)
+++.++..+++.+.+.... ..--.+..+.|++.++|.|.. +..+.
T Consensus 165 ~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~l~~~~~G~~r~a~~~l~ 210 (323)
T 1sxj_B 165 KLSDEDVLKRLLQIIKLED--VKYTNDGLEAIIFTAEGDMRQAINNLQ 210 (323)
T ss_dssp CCCHHHHHHHHHHHHHHHT--CCBCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 9999999999988764321 111245678899999999954 44443
No 156
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.64 E-value=3.2e-07 Score=100.40 Aligned_cols=178 Identities=13% Similarity=0.149 Sum_probs=113.8
Q ss_pred CCCCCchHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHhhhhcccCCCC-CeEEEEEeCCCCCHHHHHHHHHHHhc
Q 001999 153 ASKFPSHKEYVETLEKHLSSGGLKKICICGPLGVGKTTIMENSHDSVGESGRF-DIIFWVNVNTDGNISDIQEIILERLK 231 (984)
Q Consensus 153 ~~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F-~~~~wv~vs~~~~~~~i~~~i~~~l~ 231 (984)
..+++|+++.++.+.+++..+..+.+.++|++|+||||+|+...+.+.. ..+ ...+.+..++......+
T Consensus 24 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~-~~~~~~~~~~~~~~~~~~~~~--------- 93 (327)
T 1iqp_A 24 LDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFG-ENWRHNFLELNASDERGINVI--------- 93 (327)
T ss_dssp TTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHG-GGHHHHEEEEETTCHHHHHTT---------
T ss_pred HHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcC-CcccCceEEeeccccCchHHH---------
Confidence 4678999999999999998877667999999999999999996655420 111 12333333321111100
Q ss_pred cCccccchHHHHHHHHHH-----H-cCCcEEEEEECCCCcc--chhhh--ccccCCCCcEEEEEcCCccccc----cCCc
Q 001999 232 VNAKELDNAQRADNISKE-----L-KDKRYVLFLDGVSSEI--NFKEI--GIHDDHGRGKVVFACRSREFCW----QADD 297 (984)
Q Consensus 232 ~~~~~~~~~~~~~~l~~~-----L-~~kr~LlVlDdv~~~~--~~~~~--~~~~~~~gs~ilvTTR~~~v~~----~~~~ 297 (984)
...+... + .+++.++|+||++... .+..+ .+.....++++|+||....-.. ....
T Consensus 94 -----------~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~ 162 (327)
T 1iqp_A 94 -----------REKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCA 162 (327)
T ss_dssp -----------HHHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEE
T ss_pred -----------HHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCc
Confidence 0111111 1 2678899999997642 23333 1223345678888887654222 3345
Q ss_pred eEEccCCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCCchHHHHHHHHhh
Q 001999 298 VIHVERLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGMPYMLKLIGKELV 353 (984)
Q Consensus 298 ~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~~~~~l~ 353 (984)
.+.+.+++.++...++.+.+.... ..--.+..+.|++.++|.|..+..+...+.
T Consensus 163 ~~~~~~l~~~~~~~~l~~~~~~~~--~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~ 216 (327)
T 1iqp_A 163 IFRFRPLRDEDIAKRLRYIAENEG--LELTEEGLQAILYIAEGDMRRAINILQAAA 216 (327)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTT--CEECHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 899999999999999988765431 112245778899999999987665554443
No 157
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.60 E-value=6.4e-07 Score=100.46 Aligned_cols=119 Identities=17% Similarity=0.206 Sum_probs=66.0
Q ss_pred CceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCCc-chhcccccCeEecCCCcccccCc-hhhhccCCCcEEE
Q 001999 520 CEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLPP-SISRLINLNALFLRSCSLLFQLP-KEIRYLQKLEILD 597 (984)
Q Consensus 520 ~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~lp-~~i~~L~~L~~L~ 597 (984)
..++.+.+.+ .++.++...|.++ +|+.+.+..+ ++.++. .+.++ +|+.+.+.. .++.++ ..+.++.+|+.++
T Consensus 113 ~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 113 KGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS--TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp SSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT--TCCEECSSTTTTCTTCCEEE
T ss_pred CCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC--CccEehHHHhhCcccCCeee
Confidence 3344444432 3555666666664 5777776654 555533 34443 577777664 344444 3466677777777
Q ss_pred ecCccccccchhhhccCCCCeeecccccccCccccCCCCCCcccchhhhhccccccceee
Q 001999 598 VRHTRIQCLPSEIGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSNIISKLCLLEELII 657 (984)
Q Consensus 598 l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~~L~~L~~L~l 657 (984)
+..++++.+|...-...+|+.+.+. .+ +. .++...+.++++|+.+.+
T Consensus 187 l~~n~l~~I~~~aF~~~~L~~l~lp-----~~--l~------~I~~~aF~~~~~L~~l~l 233 (401)
T 4fdw_A 187 LSKTKITKLPASTFVYAGIEEVLLP-----VT--LK------EIGSQAFLKTSQLKTIEI 233 (401)
T ss_dssp CTTSCCSEECTTTTTTCCCSEEECC-----TT--CC------EECTTTTTTCTTCCCEEC
T ss_pred cCCCcceEechhhEeecccCEEEeC-----Cc--hh------eehhhHhhCCCCCCEEec
Confidence 7777777666654445666666664 21 22 344444555555555544
No 158
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.60 E-value=7.9e-08 Score=105.36 Aligned_cols=287 Identities=12% Similarity=0.055 Sum_probs=141.3
Q ss_pred hhccCeEeeeccCCCC-CCCCCCC-cCceeEEEecCcccC--CCcchHhhcCCCccEEeccCCCCccCCc-chhc-----
Q 001999 496 EWKDTKKLSLFGFPSS-TLPDMPN-CCEILTLIVEGRRLE--KLPMSFFEYMCHLQLLDLHDTSIRCLPP-SISR----- 565 (984)
Q Consensus 496 ~~~~~r~l~l~~~~~~-~l~~~~~-~~~L~~L~l~~~~l~--~l~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~----- 565 (984)
.+.++++|.+.++-.. .+..+.. +++|++|++++|.+. ..+.. .++.++.+.+..+ .+|. .+.+
T Consensus 23 ~~~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~---~I~~~aF~~~~~~~ 96 (329)
T 3sb4_A 23 EANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMAN---FVPAYAFSNVVNGV 96 (329)
T ss_dssp HHHHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTT---EECTTTTEEEETTE
T ss_pred hhCceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEecCccc---ccccccccccccc---ccCHHHhccccccc
Confidence 4567777777653110 0111122 678999999988887 32222 1222444555444 2322 3445
Q ss_pred ---ccccCeEecCCCcccccCch-hhhccCCCcEEEecCccccccchh-hhccCCCCeeecccccccCccccCCCCCCcc
Q 001999 566 ---LINLNALFLRSCSLLFQLPK-EIRYLQKLEILDVRHTRIQCLPSE-IGQLIKLKCLRVSWVENVGNHTHAGAWPGEM 640 (984)
Q Consensus 566 ---l~~L~~L~L~~c~~l~~lp~-~i~~L~~L~~L~l~~~~l~~lp~~-~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ 640 (984)
|.+|+.|.|.+ .++.++. .+.+|++|+.|++..+.+..++.. +..+.++..+....... ..... .
T Consensus 97 ~~g~~~L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~--~~~~~------~ 166 (329)
T 3sb4_A 97 TKGKQTLEKVILSE--KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDA--YRFKN------R 166 (329)
T ss_dssp EEECTTCCC-CBCT--TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHH--HHTST------T
T ss_pred ccccCCCcEEECCc--cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhh--hhccc------c
Confidence 78888888876 3566654 477788888888888877766554 55666666665541000 00000 1
Q ss_pred cchhhhhcccccc-ceeeeecCCchhHHhhhhhhhHHHhhccCCCceEEEecCCcchhhhhhhcccccCCCCCCCCCCcc
Q 001999 641 ISSNIISKLCLLE-ELIIEVLDPSDRRWKQNVESIAGEIAALEQLTTLHFYFPTIKCFKTFINRRKSVNGNKSRHGDNFK 719 (984)
Q Consensus 641 ip~~~l~~L~~L~-~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 719 (984)
+....+.++..|+ .+.+..... .............+++.+.+...-.......+.
T Consensus 167 i~~~~f~~~~~L~~~i~~~~~~~-------l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~----------------- 222 (329)
T 3sb4_A 167 WEHFAFIEGEPLETTIQVGAMGK-------LEDEIMKAGLQPRDINFLTIEGKLDNADFKLIR----------------- 222 (329)
T ss_dssp TTTSCEEESCCCEEEEEECTTCC-------HHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHH-----------------
T ss_pred ccccccccccccceeEEecCCCc-------HHHHHhhcccCccccceEEEeeeecHHHHHHHH-----------------
Confidence 2222234444444 222221100 011111111123333444333211000000000
Q ss_pred eeEEEecccCccceeccccccccccccceEEc-cCCCCchhHHHHHhhhccceeeccccccccccccccccccccC-eeE
Q 001999 720 SFNIVVGYPQSTSLLAGFDVSEWSAEKHLRFS-AGVEEIPGEFLTILKQAYSFELIGSQYAVNLSNFGVDNLVRLQ-ACV 797 (984)
Q Consensus 720 ~~~~~~g~~~~~~~l~~~~~p~~~~L~~L~l~-~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~-~L~ 797 (984)
..++.|+.|.+. +++..++...+..+.+|+.+.+.++ +..++...|.++++|+ .+.
T Consensus 223 --------------------~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~ 280 (329)
T 3sb4_A 223 --------------------DYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLE 280 (329)
T ss_dssp --------------------HHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEE
T ss_pred --------------------HhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEE
Confidence 001113333333 1233333333334445555555443 5556666778889998 999
Q ss_pred EcccCCceEEecCCCCCcccCCCcceeecccccccccccccccccCcccccceee
Q 001999 798 IEDCNEMTSIIDGNHRGVVPFQGLNNLHIKNLPKLMHIWVGPIASGSLNSLRTLR 852 (984)
Q Consensus 798 l~~~~~l~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~ 852 (984)
+.+ .++.|+...+. .+++|+.+.+.+ .++..+.... ...+++|+.|+
T Consensus 281 l~~--~l~~I~~~aF~---~c~~L~~l~l~~-n~i~~I~~~a--F~~~~~L~~ly 327 (329)
T 3sb4_A 281 LPA--SVTAIEFGAFM---GCDNLRYVLATG-DKITTLGDEL--FGNGVPSKLIY 327 (329)
T ss_dssp ECT--TCCEECTTTTT---TCTTEEEEEECS-SCCCEECTTT--TCTTCCCCEEE
T ss_pred Ecc--cceEEchhhhh---CCccCCEEEeCC-CccCccchhh--hcCCcchhhhc
Confidence 986 67788765433 368889988854 2445543322 24678888775
No 159
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.56 E-value=9.5e-07 Score=99.38 Aligned_cols=146 Identities=17% Similarity=0.175 Sum_probs=86.7
Q ss_pred cccccccCeeEEcccCCceEEecCCCCCcccCCCcceeecccccccccccccccccCcccccceeeecccccccccCcHH
Q 001999 787 VDNLVRLQACVIEDCNEMTSIIDGNHRGVVPFQGLNNLHIKNLPKLMHIWVGPIASGSLNSLRTLRVKICHSIKTLFSKE 866 (984)
Q Consensus 787 ~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~ 866 (984)
+.++.+|+.+.+.. .+..+..... ..++.|+.+.+.... +.. .....+.+|+.+.+.. +++.+ +..
T Consensus 249 f~~~~~l~~~~~~~--~~~~i~~~~F---~~~~~l~~~~~~~~~----i~~--~~F~~~~~L~~i~l~~--~i~~I-~~~ 314 (394)
T 4fs7_A 249 FYGCTDLESISIQN--NKLRIGGSLF---YNCSGLKKVIYGSVI----VPE--KTFYGCSSLTEVKLLD--SVKFI-GEE 314 (394)
T ss_dssp TTTCSSCCEEEECC--TTCEECSCTT---TTCTTCCEEEECSSE----ECT--TTTTTCTTCCEEEECT--TCCEE-CTT
T ss_pred ccccccceeEEcCC--Ccceeecccc---ccccccceeccCcee----ecc--cccccccccccccccc--cccee-chh
Confidence 34456666666643 2334433221 123455554443211 111 1123567788887765 36665 445
Q ss_pred HHhhcccccEEeecccchhHHHhhcCcccccCCCCcccEeeccCCccccccCCCCccCCCCcceEeecccccccccCcCC
Q 001999 867 MVAQLNELQDLQVEDCQMIEEIVEAGTVLAIGEFPKLKTLELIDLPKLSTICNSLLLPWPSLETIKIKACNALKSFPSTF 946 (984)
Q Consensus 867 ~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~L~~L~L~~c~~L~~i~~~~~~~l~sL~~L~i~~C~~L~~lp~~~ 946 (984)
.+..+++|+.++|.+. ++.+. ...+.++.+|+.+.|.. +++.|+...+..+++|+.+++.. +++.+...+
T Consensus 315 aF~~c~~L~~i~lp~~--v~~I~----~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp~--~~~~~~~~F 384 (394)
T 4fs7_A 315 AFESCTSLVSIDLPYL--VEEIG----KRSFRGCTSLSNINFPL--SLRKIGANAFQGCINLKKVELPK--RLEQYRYDF 384 (394)
T ss_dssp TTTTCTTCCEECCCTT--CCEEC----TTTTTTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEEG--GGGGGGGGB
T ss_pred hhcCCCCCCEEEeCCc--ccEEh----HHhccCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEECC--CCEEhhhee
Confidence 6778888888888642 33221 12566778888888864 47888776677888888888853 456666667
Q ss_pred cCCcCcceee
Q 001999 947 KNTTMLKVIK 956 (984)
Q Consensus 947 ~~l~~L~~l~ 956 (984)
.+.++|+.++
T Consensus 385 ~~c~~L~~IK 394 (394)
T 4fs7_A 385 EDTTKFKWIK 394 (394)
T ss_dssp CTTCEEEEEC
T ss_pred cCCCCCcEEC
Confidence 7777777653
No 160
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.44 E-value=2.9e-07 Score=101.71 Aligned_cols=94 Identities=18% Similarity=0.215 Sum_probs=44.1
Q ss_pred EecCc-ccCCCcchHhhcCCCccEEeccC-CCCccCC-cchhcccccCeEecCCCcccccC-chhhhccCCCcEEEecCc
Q 001999 526 IVEGR-RLEKLPMSFFEYMCHLQLLDLHD-TSIRCLP-PSISRLINLNALFLRSCSLLFQL-PKEIRYLQKLEILDVRHT 601 (984)
Q Consensus 526 ~l~~~-~l~~l~~~~~~~l~~Lr~L~L~~-~~i~~lp-~~i~~l~~L~~L~L~~c~~l~~l-p~~i~~L~~L~~L~l~~~ 601 (984)
+++++ .+..+|. +..+.+|++|+|++ |.++.+| ..++.|.+|++|+|++|. ++.+ |..+++|++|++|+|++|
T Consensus 14 ~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 14 RCTRDGALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp ECCSSCCCTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCSS
T ss_pred EcCCCCCCCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCCCC
Confidence 34433 4444444 44445555555553 4555443 234455555555555543 3332 223455555555555555
Q ss_pred cccccchhhhccCCCCeeecc
Q 001999 602 RIQCLPSEIGQLIKLKCLRVS 622 (984)
Q Consensus 602 ~l~~lp~~~~~L~~L~~L~l~ 622 (984)
++..+|..+....+|+.|++.
T Consensus 91 ~l~~~~~~~~~~~~L~~l~l~ 111 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELVLS 111 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEECC
T ss_pred ccceeCHHHcccCCceEEEee
Confidence 555555443322225555554
No 161
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.42 E-value=9.3e-08 Score=106.17 Aligned_cols=124 Identities=15% Similarity=0.152 Sum_probs=69.1
Q ss_pred ccCeEeeeccCCCCCCC-----C-C-CCcCceeEEEecCcccCCCc-chHhhcCCCccEEeccCCCCccC-Ccchh----
Q 001999 498 KDTKKLSLFGFPSSTLP-----D-M-PNCCEILTLIVEGRRLEKLP-MSFFEYMCHLQLLDLHDTSIRCL-PPSIS---- 564 (984)
Q Consensus 498 ~~~r~l~l~~~~~~~l~-----~-~-~~~~~L~~L~l~~~~l~~l~-~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~---- 564 (984)
+.++.+++.+|.+.... . + ...++|+.|++++|.+.... ..+...+++|+.|+|++|.++.. ...++
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 46777777777665311 0 0 12356777777777664321 12233455677777777766532 11221
Q ss_pred -cccccCeEecCCCcccc-----cCchhhhccCCCcEEEecCccccc-----cchhhhccCCCCeeecc
Q 001999 565 -RLINLNALFLRSCSLLF-----QLPKEIRYLQKLEILDVRHTRIQC-----LPSEIGQLIKLKCLRVS 622 (984)
Q Consensus 565 -~l~~L~~L~L~~c~~l~-----~lp~~i~~L~~L~~L~l~~~~l~~-----lp~~~~~L~~L~~L~l~ 622 (984)
...+|++|+|++|. ++ .++..+..+++|++|++++|.+.. ++..+...++|++|+++
T Consensus 152 ~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls 219 (372)
T 3un9_A 152 HDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVA 219 (372)
T ss_dssp STTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECC
T ss_pred hcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECC
Confidence 34567777777664 32 233444566667777777766552 33445556666666666
No 162
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.41 E-value=6.1e-06 Score=88.08 Aligned_cols=162 Identities=9% Similarity=0.053 Sum_probs=102.2
Q ss_pred CCchHHHHHHHHHHhcc----CCccEEEEEcCCCChHHHHHHHhhhhcccCC---CCC--eEEEEEeCCCCCHHHHHHHH
Q 001999 156 FPSHKEYVETLEKHLSS----GGLKKICICGPLGVGKTTIMENSHDSVGESG---RFD--IIFWVNVNTDGNISDIQEII 226 (984)
Q Consensus 156 ~vgr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~---~F~--~~~wv~vs~~~~~~~i~~~i 226 (984)
+.||++++++|...|.. ...+.+-|+|++|+|||++|+.+.+.+.... ... ..+.|+...-.+...+...|
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I 101 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKI 101 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHH
Confidence 68999999999877764 6778899999999999999999666654111 111 35667766777888999999
Q ss_pred HHHhccCccccch-HHHHHHHHHHH---cCCcEEEEEECCCCccchhhh----ccccCCCCc--EEEEEcCCccc-----
Q 001999 227 LERLKVNAKELDN-AQRADNISKEL---KDKRYVLFLDGVSSEINFKEI----GIHDDHGRG--KVVFACRSREF----- 291 (984)
Q Consensus 227 ~~~l~~~~~~~~~-~~~~~~l~~~L---~~kr~LlVlDdv~~~~~~~~~----~~~~~~~gs--~ilvTTR~~~v----- 291 (984)
++++......... .+....+.+.+ +++++++|||++....+-+.+ .++.. .++ .||.++...+.
T Consensus 102 ~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~-~~s~~~vI~i~n~~d~~~~~L 180 (318)
T 3te6_A 102 WFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISS-KNSKLSIICVGGHNVTIREQI 180 (318)
T ss_dssp HHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHC-SSCCEEEEEECCSSCCCHHHH
T ss_pred HHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccc-cCCcEEEEEEecCcccchhhc
Confidence 9999654221111 23333333333 467899999999764311111 11211 222 33333433221
Q ss_pred cc----cC-CceEEccCCChHHHHHHHHHHhC
Q 001999 292 CW----QA-DDVIHVERLSPREAKKLFWEVVG 318 (984)
Q Consensus 292 ~~----~~-~~~~~l~~L~~~~~~~Lf~~~~~ 318 (984)
.. .. ...+.+.+++.+|-.+++++++.
T Consensus 181 ~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 181 NIMPSLKAHFTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp HTCHHHHTTEEEEECCCCCHHHHHHHHHHHHH
T ss_pred chhhhccCCceEEEeCCCCHHHHHHHHHHHHH
Confidence 11 22 25799999999999999988764
No 163
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.41 E-value=3.7e-07 Score=100.84 Aligned_cols=104 Identities=17% Similarity=0.172 Sum_probs=86.2
Q ss_pred EeeeccC-CCCCCCCCCCcCceeEEEecC-cccCCCcchHhhcCCCccEEeccCCCCccCC-cchhcccccCeEecCCCc
Q 001999 502 KLSLFGF-PSSTLPDMPNCCEILTLIVEG-RRLEKLPMSFFEYMCHLQLLDLHDTSIRCLP-PSISRLINLNALFLRSCS 578 (984)
Q Consensus 502 ~l~l~~~-~~~~l~~~~~~~~L~~L~l~~-~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~c~ 578 (984)
.+...++ .+..+|.+..+++|+.|+|++ |.+..++...|.++++|++|+|++|.++.+| ..|++|.+|++|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N- 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN- 90 (347)
T ss_dssp CEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS-
T ss_pred EEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC-
Confidence 4566666 788888888888999999996 9999998877999999999999999999875 46799999999999996
Q ss_pred ccccCchhhhccCCCcEEEecCcccccc
Q 001999 579 LLFQLPKEIRYLQKLEILDVRHTRIQCL 606 (984)
Q Consensus 579 ~l~~lp~~i~~L~~L~~L~l~~~~l~~l 606 (984)
.++.+|..+.....|++|++.+|.+...
T Consensus 91 ~l~~~~~~~~~~~~L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELVLSGNPLHCS 118 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEECCSSCCCCC
T ss_pred ccceeCHHHcccCCceEEEeeCCCccCC
Confidence 4778887655444599999999988743
No 164
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.37 E-value=2.4e-06 Score=92.93 Aligned_cols=178 Identities=12% Similarity=0.146 Sum_probs=111.0
Q ss_pred CCCCCchHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHhhhhcccCCCCC-eEEEEEeCCCCCHHHHHHHHHHHhc
Q 001999 153 ASKFPSHKEYVETLEKHLSSGGLKKICICGPLGVGKTTIMENSHDSVGESGRFD-IIFWVNVNTDGNISDIQEIILERLK 231 (984)
Q Consensus 153 ~~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~-~~~wv~vs~~~~~~~i~~~i~~~l~ 231 (984)
..+++|++..++.+.+++..+..+.+.++|++|+||||+|+...+.+.. ..+. ..+.++.+.......+
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~-~~~~~~~~~~~~~~~~~~~~~--------- 85 (319)
T 2chq_A 16 LDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFG-ENWRDNFIEMNASDERGIDVV--------- 85 (319)
T ss_dssp GGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHT-TCHHHHCEEEETTSTTCTTTS---------
T ss_pred HHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcC-CcccCCeEEEeCccccChHHH---------
Confidence 4568999999999999998776666999999999999999996655420 2211 1233443332111100
Q ss_pred cCccccchHHHHHHHHHH--H-cCCcEEEEEECCCCcc--chhhh--ccccCCCCcEEEEEcCCcc-ccc---cCCceEE
Q 001999 232 VNAKELDNAQRADNISKE--L-KDKRYVLFLDGVSSEI--NFKEI--GIHDDHGRGKVVFACRSRE-FCW---QADDVIH 300 (984)
Q Consensus 232 ~~~~~~~~~~~~~~l~~~--L-~~kr~LlVlDdv~~~~--~~~~~--~~~~~~~gs~ilvTTR~~~-v~~---~~~~~~~ 300 (984)
.......... + .+++.++|+|++.... ....+ .+.....+..+|+||.... +.. .....++
T Consensus 86 --------~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~ 157 (319)
T 2chq_A 86 --------RHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFR 157 (319)
T ss_dssp --------SHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEE
T ss_pred --------HHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEE
Confidence 1111111100 1 2568899999997642 22222 1223345677887776544 222 4456899
Q ss_pred ccCCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCCchHHHHHHH
Q 001999 301 VERLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGMPYMLKLIGK 350 (984)
Q Consensus 301 l~~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~~~~ 350 (984)
+.+++.++...++.+.+.... ..--.+..+.+++.++|.+..+.....
T Consensus 158 ~~~~~~~~~~~~l~~~~~~~~--~~i~~~~l~~l~~~~~G~~r~~~~~l~ 205 (319)
T 2chq_A 158 FKPVPKEAMKKRLLEICEKEG--VKITEDGLEALIYISGGDFRKAINALQ 205 (319)
T ss_dssp CCCCCHHHHHHHHHHHHHTTC--CCBCHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred ecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 999999999999988775431 111245678889999999976554443
No 165
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.36 E-value=1.7e-06 Score=96.88 Aligned_cols=246 Identities=11% Similarity=0.094 Sum_probs=151.2
Q ss_pred CCCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCC-cchhcccccCeEecCCCcccccCchhhhccCCCc
Q 001999 516 MPNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLP-PSISRLINLNALFLRSCSLLFQLPKEIRYLQKLE 594 (984)
Q Consensus 516 ~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~ 594 (984)
+..+ +|+.+.+..+ +..++...|.++ .|+.+.+.. .++.++ ..+.+|.+|+.+++.++ .++.+|...-...+|+
T Consensus 132 F~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n-~l~~I~~~aF~~~~L~ 206 (401)
T 4fdw_A 132 FRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKT-KITKLPASTFVYAGIE 206 (401)
T ss_dssp TTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTS-CCSEECTTTTTTCCCS
T ss_pred cccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCC-cceEechhhEeecccC
Confidence 3444 6888888755 788888878884 699999986 677774 46889999999999874 5777777654568999
Q ss_pred EEEecCccccccchh-hhccCCCCeeecccccccCccccCCCCCCcccchhhhhccccccceeeeecCCchhHHhhhhhh
Q 001999 595 ILDVRHTRIQCLPSE-IGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSNIISKLCLLEELIIEVLDPSDRRWKQNVES 673 (984)
Q Consensus 595 ~L~l~~~~l~~lp~~-~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~ 673 (984)
.+.+.. .++.++.. +..+++|+.+.+. .+ +. .++...+.+ ++|+.+.+.. .. ..-
T Consensus 207 ~l~lp~-~l~~I~~~aF~~~~~L~~l~l~-----~~--l~------~I~~~aF~~-~~L~~i~lp~-~i--------~~I 262 (401)
T 4fdw_A 207 EVLLPV-TLKEIGSQAFLKTSQLKTIEIP-----EN--VS------TIGQEAFRE-SGITTVKLPN-GV--------TNI 262 (401)
T ss_dssp EEECCT-TCCEECTTTTTTCTTCCCEECC-----TT--CC------EECTTTTTT-CCCSEEEEET-TC--------CEE
T ss_pred EEEeCC-chheehhhHhhCCCCCCEEecC-----CC--cc------Ccccccccc-CCccEEEeCC-Cc--------cEE
Confidence 999974 47766654 7788999999987 32 22 466666766 6788887753 11 111
Q ss_pred hHHHhhccCCCceEEEecCCcchhhhhhhcccccCCCCCCCCCCcceeEEEecccCccceeccccccccccccceEEccC
Q 001999 674 IAGEIAALEQLTTLHFYFPTIKCFKTFINRRKSVNGNKSRHGDNFKSFNIVVGYPQSTSLLAGFDVSEWSAEKHLRFSAG 753 (984)
Q Consensus 674 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~l~~~~~p~~~~L~~L~l~~~ 753 (984)
....+..+++|+.+.+..+...... ...+....|..+..|+.+.+.+
T Consensus 263 ~~~aF~~c~~L~~l~l~~~~~~~~~--------------------------------~~~I~~~aF~~c~~L~~l~l~~- 309 (401)
T 4fdw_A 263 ASRAFYYCPELAEVTTYGSTFNDDP--------------------------------EAMIHPYCLEGCPKLARFEIPE- 309 (401)
T ss_dssp CTTTTTTCTTCCEEEEESSCCCCCT--------------------------------TCEECTTTTTTCTTCCEECCCT-
T ss_pred ChhHhhCCCCCCEEEeCCccccCCc--------------------------------ccEECHHHhhCCccCCeEEeCC-
Confidence 1235677888888888643221000 0001111122222233333321
Q ss_pred CCCchhHHHHHhhhccceeeccccccccccccccccccccCeeEEcccCCceEEecCCCCCcccCCCcceeecccccccc
Q 001999 754 VEEIPGEFLTILKQAYSFELIGSQYAVNLSNFGVDNLVRLQACVIEDCNEMTSIIDGNHRGVVPFQGLNNLHIKNLPKLM 833 (984)
Q Consensus 754 ~~~l~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~L~~L~l~~~~~l~ 833 (984)
.+..+....+.++++|+.+.|.. .++.+....+. .+ +|+.+.+.+.. +.
T Consensus 310 ------------------------~i~~I~~~aF~~c~~L~~l~lp~--~l~~I~~~aF~---~~-~L~~l~l~~n~-~~ 358 (401)
T 4fdw_A 310 ------------------------SIRILGQGLLGGNRKVTQLTIPA--NVTQINFSAFN---NT-GIKEVKVEGTT-PP 358 (401)
T ss_dssp ------------------------TCCEECTTTTTTCCSCCEEEECT--TCCEECTTSSS---SS-CCCEEEECCSS-CC
T ss_pred ------------------------ceEEEhhhhhcCCCCccEEEECc--cccEEcHHhCC---CC-CCCEEEEcCCC-Cc
Confidence 23344444667788888888853 47777655433 34 88888887742 22
Q ss_pred cccccccccCcc-cccceeeeccc
Q 001999 834 HIWVGPIASGSL-NSLRTLRVKIC 856 (984)
Q Consensus 834 ~i~~~~~~~~~l-~~L~~L~l~~c 856 (984)
.+....+ ..+ .+++.|.+...
T Consensus 359 ~l~~~~F--~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 359 QVFEKVW--YGFPDDITVIRVPAE 380 (401)
T ss_dssp BCCCSSC--CCSCTTCCEEEECGG
T ss_pred ccccccc--cCCCCCccEEEeCHH
Confidence 2222211 234 36777877654
No 166
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.34 E-value=6.8e-06 Score=91.59 Aligned_cols=189 Identities=13% Similarity=0.139 Sum_probs=108.4
Q ss_pred CCCCCchHHHHHHHHHHhccCC-ccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHHHHHh-
Q 001999 153 ASKFPSHKEYVETLEKHLSSGG-LKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEIILERL- 230 (984)
Q Consensus 153 ~~~~vgr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l- 230 (984)
..+++|++..++.+.+++..+. ...+.|+|+.|+||||+|+...+.+.....+. ...+..-.-...+...-
T Consensus 15 ~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~ 87 (373)
T 1jr3_A 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT-------ATPCGVCDNCREIEQGRF 87 (373)
T ss_dssp TTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC-------SSCCSSSHHHHHHHTSCC
T ss_pred hhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC-------CCCCcccHHHHHHhccCC
Confidence 4569999999999999987654 35788999999999999999655543111110 00000000001111000
Q ss_pred ----ccCccccchHHHHHHHHHHH-----cCCcEEEEEECCCCcc--chhhh--ccccCCCCcEEEEEcCCcc-ccc---
Q 001999 231 ----KVNAKELDNAQRADNISKEL-----KDKRYVLFLDGVSSEI--NFKEI--GIHDDHGRGKVVFACRSRE-FCW--- 293 (984)
Q Consensus 231 ----~~~~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~~--~~~~~--~~~~~~~gs~ilvTTR~~~-v~~--- 293 (984)
..........+....+.+.+ .+++.+||+||+.... ....+ .+.....+..+|++|.... +..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~ 167 (373)
T 1jr3_A 88 VDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTIL 167 (373)
T ss_dssp SSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHH
T ss_pred CceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHH
Confidence 00000000000111222222 3567899999997542 22322 1223334567777765443 222
Q ss_pred cCCceEEccCCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCCchHHHHHHH
Q 001999 294 QADDVIHVERLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGMPYMLKLIGK 350 (984)
Q Consensus 294 ~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~~~~ 350 (984)
.....+++.+++.++..+++.+.+.... ..--.+....|++.++|.|..+..+..
T Consensus 168 sr~~~i~~~~l~~~~~~~~l~~~~~~~~--~~~~~~a~~~l~~~~~G~~r~~~~~l~ 222 (373)
T 1jr3_A 168 SRCLQFHLKALDVEQIRHQLEHILNEEH--IAHEPRALQLLARAAEGSLRDALSLTD 222 (373)
T ss_dssp TTSEEEECCCCCHHHHHHHHHHHHHHHT--CCBCHHHHHHHHHHSSSCHHHHHHHHH
T ss_pred hheeEeeCCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 4557899999999999999987764321 111245678899999999987766543
No 167
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.31 E-value=1.8e-06 Score=86.07 Aligned_cols=148 Identities=14% Similarity=0.149 Sum_probs=83.6
Q ss_pred CCCCCchHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHhhhhcccCC-----CCCeEEEEEeCCCCCHHHHHHHHH
Q 001999 153 ASKFPSHKEYVETLEKHLSSGGLKKICICGPLGVGKTTIMENSHDSVGESG-----RFDIIFWVNVNTDGNISDIQEIIL 227 (984)
Q Consensus 153 ~~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~-----~F~~~~wv~vs~~~~~~~i~~~i~ 227 (984)
..+++||+++++++.+++.....+.+.|+|++|+|||++|+...+.+.... .....+++..+ .+.
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~---- 90 (195)
T 1jbk_A 21 LDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMG------ALV---- 90 (195)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHH------HHH----
T ss_pred ccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHH------HHh----
Confidence 456899999999999999876677889999999999999999555542100 11234444321 111
Q ss_pred HHhccCccccchHHHHHHHHHHH--cCCcEEEEEECCCCcc---------chhhhccc-cCCCCcEEEEEcCCccc----
Q 001999 228 ERLKVNAKELDNAQRADNISKEL--KDKRYVLFLDGVSSEI---------NFKEIGIH-DDHGRGKVVFACRSREF---- 291 (984)
Q Consensus 228 ~~l~~~~~~~~~~~~~~~l~~~L--~~kr~LlVlDdv~~~~---------~~~~~~~~-~~~~gs~ilvTTR~~~v---- 291 (984)
...............+.+.+ .+++.+||+||+.... +....... ....+..+|+||.....
T Consensus 91 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~ 167 (195)
T 1jbk_A 91 ---AGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQYI 167 (195)
T ss_dssp ---TTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHTTSCCEEEEECHHHHHHHT
T ss_pred ---ccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhccCCeEEEEeCCHHHHHHHH
Confidence 00000000011122222222 3568899999997541 11111111 12234566776665432
Q ss_pred --cc---cCCceEEccCCChHHHHHHH
Q 001999 292 --CW---QADDVIHVERLSPREAKKLF 313 (984)
Q Consensus 292 --~~---~~~~~~~l~~L~~~~~~~Lf 313 (984)
.. .....+.+.+++.++..+++
T Consensus 168 ~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 168 EKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp TTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred hcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 11 33346888888888776543
No 168
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.30 E-value=4.9e-06 Score=93.49 Aligned_cols=60 Identities=13% Similarity=0.352 Sum_probs=45.2
Q ss_pred CCCCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCCc-chhcccccCeEecCC
Q 001999 515 DMPNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLPP-SISRLINLNALFLRS 576 (984)
Q Consensus 515 ~~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~ 576 (984)
.+.+|.+|+++.+.. .++.++...|.++.+|+.++|..+ ++.++. .+.++.+|+.+.+..
T Consensus 66 AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~ 126 (394)
T 4fs7_A 66 AFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPL 126 (394)
T ss_dssp TTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred HhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccC
Confidence 467888999998874 478888888999999999999754 665543 566777887776654
No 169
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.22 E-value=1.8e-07 Score=90.18 Aligned_cols=91 Identities=24% Similarity=0.394 Sum_probs=59.4
Q ss_pred CCcceeecccccccccccccccccCcccccceeeecccccccccCcHHHHhhc----ccccEEeecccchhHHHhhcCcc
Q 001999 819 QGLNNLHIKNLPKLMHIWVGPIASGSLNSLRTLRVKICHSIKTLFSKEMVAQL----NELQDLQVEDCQMIEEIVEAGTV 894 (984)
Q Consensus 819 ~~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~l~~l----~~L~~L~l~~c~~l~~i~~~~~~ 894 (984)
..|++|++++|. +++. +......+++|++|++++|..+++. ....+..+ ++|++|+|++|..+++- ++
T Consensus 61 ~~L~~LDLs~~~-Itd~--GL~~L~~~~~L~~L~L~~C~~ItD~-gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~---Gl- 132 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSI--GFDHMEGLQYVEKIRLCKCHYIEDG-CLERLSQLENLQKSMLEMEIISCGNVTDK---GI- 132 (176)
T ss_dssp CCEEEEEEESCC-CCGG--GGGGGTTCSCCCEEEEESCTTCCHH-HHHHHHTCHHHHHHCCEEEEESCTTCCHH---HH-
T ss_pred ceEeEEeCcCCC-ccHH--HHHHhcCCCCCCEEEeCCCCccCHH-HHHHHHhcccccCCCCEEEcCCCCcCCHH---HH-
Confidence 468888888886 4432 1222356788888888888777776 33444443 46888888888776532 22
Q ss_pred cccCCCCcccEeeccCCcccccc
Q 001999 895 LAIGEFPKLKTLELIDLPKLSTI 917 (984)
Q Consensus 895 ~~~~~~~~L~~L~L~~c~~L~~i 917 (984)
..+..+++|++|+|++|+.+++.
T Consensus 133 ~~L~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 133 IALHHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp HHGGGCTTCCEEEEESCTTCCCH
T ss_pred HHHhcCCCCCEEECCCCCCCCch
Confidence 13446778888888888777763
No 170
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.20 E-value=3.5e-05 Score=87.08 Aligned_cols=175 Identities=15% Similarity=0.202 Sum_probs=107.9
Q ss_pred cCCCCCCchHHHH---HHHHHHhccCCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCC-CCHHHHHHHH
Q 001999 151 RHASKFPSHKEYV---ETLEKHLSSGGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTD-GNISDIQEII 226 (984)
Q Consensus 151 ~~~~~~vgr~~~~---~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~-~~~~~i~~~i 226 (984)
....+++|.+..+ ..+...+.......+.++|++|+||||+|+...+... ..| +.++.. .....+ +++
T Consensus 23 ~~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~--~~f-----~~l~a~~~~~~~i-r~~ 94 (447)
T 3pvs_A 23 ENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYAN--ADV-----ERISAVTSGVKEI-REA 94 (447)
T ss_dssp CSTTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTT--CEE-----EEEETTTCCHHHH-HHH
T ss_pred CCHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhC--CCe-----EEEEeccCCHHHH-HHH
Confidence 3456799999988 7788888877788899999999999999999777765 333 222221 222222 122
Q ss_pred HHHhccCccccchHHHHHHHHHHHcCCcEEEEEECCCCcc--chhhhccc--cCCCCcEEEE-EcCCcc--ccc---cCC
Q 001999 227 LERLKVNAKELDNAQRADNISKELKDKRYVLFLDGVSSEI--NFKEIGIH--DDHGRGKVVF-ACRSRE--FCW---QAD 296 (984)
Q Consensus 227 ~~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~--~~~~~~~~--~~~~gs~ilv-TTR~~~--v~~---~~~ 296 (984)
+... ......+++.+|++|++.... ....+ ++ ... ...+|. ||.+.. +.. ...
T Consensus 95 ~~~a---------------~~~~~~~~~~iLfIDEI~~l~~~~q~~L-L~~le~~-~v~lI~att~n~~~~l~~aL~sR~ 157 (447)
T 3pvs_A 95 IERA---------------RQNRNAGRRTILFVDEVHRFNKSQQDAF-LPHIEDG-TITFIGATTENPSFELNSALLSRA 157 (447)
T ss_dssp HHHH---------------HHHHHTTCCEEEEEETTTCC------CC-HHHHHTT-SCEEEEEESSCGGGSSCHHHHTTE
T ss_pred HHHH---------------HHhhhcCCCcEEEEeChhhhCHHHHHHH-HHHHhcC-ceEEEecCCCCcccccCHHHhCce
Confidence 1111 011124688999999997642 22222 22 222 233333 555543 222 455
Q ss_pred ceEEccCCChHHHHHHHHHHhCCCC-----CCCcchHHHHHHHHHHcCCCchHHHHHHH
Q 001999 297 DVIHVERLSPREAKKLFWEVVGVNL-----KKNPDIEQEADSIVEECGGMPYMLKLIGK 350 (984)
Q Consensus 297 ~~~~l~~L~~~~~~~Lf~~~~~~~~-----~~~~~l~~~~~~I~~~c~GlPlai~~~~~ 350 (984)
..+.+.+++.++-..++.+.+.... ....--.+..+.|++.++|.+-.+..+..
T Consensus 158 ~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le 216 (447)
T 3pvs_A 158 RVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLE 216 (447)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHH
T ss_pred eEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 6899999999999999998865421 11112345778888889998865544443
No 171
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.19 E-value=0.00012 Score=80.30 Aligned_cols=169 Identities=14% Similarity=0.095 Sum_probs=102.6
Q ss_pred CCCCCCchHHHHHHHHHHhcc-----CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHH
Q 001999 152 HASKFPSHKEYVETLEKHLSS-----GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEII 226 (984)
Q Consensus 152 ~~~~~vgr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i 226 (984)
...+++|++..++.+..++.. .....+.|+|++|+|||++|+...+... ..| +.++.+.......
T Consensus 27 ~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~--~~~---~~~~~~~~~~~~~----- 96 (338)
T 3pfi_A 27 NFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMS--ANI---KTTAAPMIEKSGD----- 96 (338)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTT--CCE---EEEEGGGCCSHHH-----
T ss_pred CHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhC--CCe---EEecchhccchhH-----
Confidence 446789999999999888863 3456789999999999999999776655 333 2333322111111
Q ss_pred HHHhccCccccchHHHHHHHHHHHcCCcEEEEEECCCCcc-c-hhhh--ccc------------------cCCCCcEEEE
Q 001999 227 LERLKVNAKELDNAQRADNISKELKDKRYVLFLDGVSSEI-N-FKEI--GIH------------------DDHGRGKVVF 284 (984)
Q Consensus 227 ~~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~-~-~~~~--~~~------------------~~~~gs~ilv 284 (984)
....+.+ ..+..+|+||++.... . ...+ .+. ...++..+|.
T Consensus 97 ---------------~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 159 (338)
T 3pfi_A 97 ---------------LAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIG 159 (338)
T ss_dssp ---------------HHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEE
T ss_pred ---------------HHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEE
Confidence 1111111 2456788888887542 1 1111 000 0111245665
Q ss_pred EcCCccccc-----cCCceEEccCCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCCchHHHHHH
Q 001999 285 ACRSREFCW-----QADDVIHVERLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGMPYMLKLIG 349 (984)
Q Consensus 285 TTR~~~v~~-----~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~~~ 349 (984)
||....... .....+.+.+++.++...++.+.+.... ..--.+..+.|++.+.|.|-.+..+.
T Consensus 160 atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~--~~~~~~~~~~l~~~~~G~~r~l~~~l 227 (338)
T 3pfi_A 160 ATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLN--KTCEEKAALEIAKRSRSTPRIALRLL 227 (338)
T ss_dssp EESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT--CEECHHHHHHHHHTTTTCHHHHHHHH
T ss_pred eCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHCcCHHHHHHHH
Confidence 555433222 3347899999999999999988765331 11224577888889999985554443
No 172
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.18 E-value=8e-06 Score=94.83 Aligned_cols=184 Identities=17% Similarity=0.264 Sum_probs=107.2
Q ss_pred CCCCCchHHHHHHHHHHhcc-----------------CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCC
Q 001999 153 ASKFPSHKEYVETLEKHLSS-----------------GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNT 215 (984)
Q Consensus 153 ~~~~vgr~~~~~~l~~~L~~-----------------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~ 215 (984)
..+++|++..++++.+++.. +..+.+.|+|++|+||||+|+...+... + ..+.++.+.
T Consensus 38 ~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~----~-~~i~in~s~ 112 (516)
T 1sxj_A 38 LQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG----Y-DILEQNASD 112 (516)
T ss_dssp GGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT----C-EEEEECTTS
T ss_pred HHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC----C-CEEEEeCCC
Confidence 46789999999999999875 1347899999999999999999776653 1 244555555
Q ss_pred CCCHHHHHHHHHHHhccCccccch-HHHHHHHHHHHcCCcEEEEEECCCCccc-----hhhh-ccccCCCCcEEEEEcCC
Q 001999 216 DGNISDIQEIILERLKVNAKELDN-AQRADNISKELKDKRYVLFLDGVSSEIN-----FKEI-GIHDDHGRGKVVFACRS 288 (984)
Q Consensus 216 ~~~~~~i~~~i~~~l~~~~~~~~~-~~~~~~l~~~L~~kr~LlVlDdv~~~~~-----~~~~-~~~~~~~gs~ilvTTR~ 288 (984)
..... +....+...........- ..... .....+++.+||+|++..... +..+ .+... .+..||+++..
T Consensus 113 ~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~-~~~~iIli~~~ 188 (516)
T 1sxj_A 113 VRSKT-LLNAGVKNALDNMSVVGYFKHNEE--AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK-TSTPLILICNE 188 (516)
T ss_dssp CCCHH-HHHHTGGGGTTBCCSTTTTTC------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH-CSSCEEEEESC
T ss_pred cchHH-HHHHHHHHHhccccHHHHHhhhhh--hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh-cCCCEEEEEcC
Confidence 44433 222222221111000000 00000 001135789999999975421 1222 11111 23345555543
Q ss_pred cc---ccc--cCCceEEccCCChHHHHHHHHHHhCCC-CCCCcchHHHHHHHHHHcCCCc-hHHHHH
Q 001999 289 RE---FCW--QADDVIHVERLSPREAKKLFWEVVGVN-LKKNPDIEQEADSIVEECGGMP-YMLKLI 348 (984)
Q Consensus 289 ~~---v~~--~~~~~~~l~~L~~~~~~~Lf~~~~~~~-~~~~~~l~~~~~~I~~~c~GlP-lai~~~ 348 (984)
.. +.. .....+.+.+++.++..+.+.+.+... ....+ +....|++.++|.+ -|+..+
T Consensus 189 ~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~---~~l~~la~~s~GdiR~~i~~L 252 (516)
T 1sxj_A 189 RNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDP---NVIDRLIQTTRGDIRQVINLL 252 (516)
T ss_dssp TTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCT---THHHHHHHHTTTCHHHHHHHH
T ss_pred CCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCcHHHHHHHH
Confidence 32 222 445689999999999999998876543 22222 35778899999955 444444
No 173
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.17 E-value=3.2e-07 Score=101.88 Aligned_cols=162 Identities=15% Similarity=0.178 Sum_probs=72.4
Q ss_pred CceeEEEecCcccCCCcchHhhcC-----CCccEEeccCCCCccC--CcchhcccccCeEecCCCcccccC-chhh----
Q 001999 520 CEILTLIVEGRRLEKLPMSFFEYM-----CHLQLLDLHDTSIRCL--PPSISRLINLNALFLRSCSLLFQL-PKEI---- 587 (984)
Q Consensus 520 ~~L~~L~l~~~~l~~l~~~~~~~l-----~~Lr~L~L~~~~i~~l--p~~i~~l~~L~~L~L~~c~~l~~l-p~~i---- 587 (984)
++|+.|++++|.+.......+..+ ++|++|+|++|.++.. ..-...+.+|++|+|++|. ++.. ...+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~~~~~~L~~~L 150 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNS-LGPEACKDLRDLL 150 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSC-CCHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCC-CCHHHHHHHHHHH
Confidence 345566666555543322222222 4566666666655421 1112244556666666653 2211 1111
Q ss_pred -hccCCCcEEEecCccccc-----cchhhhccCCCCeeecccccccCccccCCCCCCc-ccchhhhhccccccceeeeec
Q 001999 588 -RYLQKLEILDVRHTRIQC-----LPSEIGQLIKLKCLRVSWVENVGNHTHAGAWPGE-MISSNIISKLCLLEELIIEVL 660 (984)
Q Consensus 588 -~~L~~L~~L~l~~~~l~~-----lp~~~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~-~ip~~~l~~L~~L~~L~l~~~ 660 (984)
...++|++|++++|.+.. ++..+..+++|++|+++ +|.... .|. .+. ..+...++|++|++.++
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls-----~N~l~~---~g~~~L~-~~L~~~~~L~~L~Ls~N 221 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLL-----HTGLGD---EGLELLA-AQLDRNRQLQELNVAYN 221 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECT-----TSSCHH---HHHHHHH-HHGGGCSCCCEEECCSS
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCC-----CCCCCc---HHHHHHH-HHHhcCCCcCeEECCCC
Confidence 123556666666665542 33344555666666665 332110 000 011 12344555666666554
Q ss_pred CCchhHHhhhhhhhHHHhhccCCCceEEEecCCcc
Q 001999 661 DPSDRRWKQNVESIAGEIAALEQLTTLHFYFPTIK 695 (984)
Q Consensus 661 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 695 (984)
..... ....+...+...++|+.|+++.+.+.
T Consensus 222 ~i~~~----g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 222 GAGDT----AALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp CCCHH----HHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred CCCHH----HHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 43321 12233344445556666666655543
No 174
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.14 E-value=1.1e-06 Score=84.68 Aligned_cols=89 Identities=12% Similarity=0.102 Sum_probs=40.1
Q ss_pred ccCeeEEcccCCceEEecCCCCCcccCCCcceeecccccccccccccccccC--cccccceeeecccccccccCcHHHHh
Q 001999 792 RLQACVIEDCNEMTSIIDGNHRGVVPFQGLNNLHIKNLPKLMHIWVGPIASG--SLNSLRTLRVKICHSIKTLFSKEMVA 869 (984)
Q Consensus 792 ~L~~L~l~~~~~l~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~--~l~~L~~L~l~~c~~L~~l~~~~~l~ 869 (984)
+|+.|++++|. ++.... .....+++|++|+|++|..+++..-...... ..++|++|+|++|+++++. ....+.
T Consensus 62 ~L~~LDLs~~~-Itd~GL---~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~-Gl~~L~ 136 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGF---DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK-GIIALH 136 (176)
T ss_dssp CEEEEEEESCC-CCGGGG---GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH-HHHHGG
T ss_pred eEeEEeCcCCC-ccHHHH---HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH-HHHHHh
Confidence 45555555554 222111 1122345555555555555443211111100 1234555555555555554 333444
Q ss_pred hcccccEEeecccchh
Q 001999 870 QLNELQDLQVEDCQMI 885 (984)
Q Consensus 870 ~l~~L~~L~l~~c~~l 885 (984)
.+++|++|+|++|+.+
T Consensus 137 ~~~~L~~L~L~~c~~I 152 (176)
T 3e4g_A 137 HFRNLKYLFLSDLPGV 152 (176)
T ss_dssp GCTTCCEEEEESCTTC
T ss_pred cCCCCCEEECCCCCCC
Confidence 5555555555555544
No 175
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.12 E-value=5.5e-05 Score=80.65 Aligned_cols=172 Identities=13% Similarity=0.136 Sum_probs=101.9
Q ss_pred CCCCCchHHHHHHHHHHhcc-------------CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCH
Q 001999 153 ASKFPSHKEYVETLEKHLSS-------------GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNI 219 (984)
Q Consensus 153 ~~~~vgr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~ 219 (984)
..+++|.++.+++|.+.+.. ...+.+.|+|++|+|||++|+....... .. .+.+..+.-..
T Consensus 16 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~--~~---~~~v~~~~~~~- 89 (285)
T 3h4m_A 16 YEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETN--AT---FIRVVGSELVK- 89 (285)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTT--CE---EEEEEGGGGCC-
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhC--CC---EEEEehHHHHH-
Confidence 45689999999999887743 3456799999999999999999776664 32 22333222110
Q ss_pred HHHHHHHHHHhccCccccchHHHHHHHHHHHcCCcEEEEEECCCCc------------cc----hhhh--ccc--cCCCC
Q 001999 220 SDIQEIILERLKVNAKELDNAQRADNISKELKDKRYVLFLDGVSSE------------IN----FKEI--GIH--DDHGR 279 (984)
Q Consensus 220 ~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~------------~~----~~~~--~~~--~~~~g 279 (984)
.............+......++.+|++||+... .. +..+ .+. ....+
T Consensus 90 -------------~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~ 156 (285)
T 3h4m_A 90 -------------KFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGD 156 (285)
T ss_dssp -------------CSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSS
T ss_pred -------------hccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCC
Confidence 000000122222233333466789999999642 01 1111 011 22345
Q ss_pred cEEEEEcCCccccc-------cCCceEEccCCChHHHHHHHHHHhCCCC-CCCcchHHHHHHHHHHcCC-CchHHHH
Q 001999 280 GKVVFACRSREFCW-------QADDVIHVERLSPREAKKLFWEVVGVNL-KKNPDIEQEADSIVEECGG-MPYMLKL 347 (984)
Q Consensus 280 s~ilvTTR~~~v~~-------~~~~~~~l~~L~~~~~~~Lf~~~~~~~~-~~~~~l~~~~~~I~~~c~G-lPlai~~ 347 (984)
..||.||....... .....+.+...+.++..++++..+.... ....+ ...+++.+.| .|-.+..
T Consensus 157 ~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~----~~~l~~~~~g~~~~~i~~ 229 (285)
T 3h4m_A 157 VKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVN----LEEIAKMTEGCVGAELKA 229 (285)
T ss_dssp EEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHHCTTCCHHHHHH
T ss_pred EEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCC----HHHHHHHcCCCCHHHHHH
Confidence 67777876554332 1234789999999999999998876442 12222 3567777777 4444443
No 176
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.07 E-value=3.1e-05 Score=85.57 Aligned_cols=192 Identities=14% Similarity=0.161 Sum_probs=105.0
Q ss_pred CCCCCCchHHHHHHHHHHh-ccCCccEEEEEcCCCChHHHHHHHhhhhc-ccC-C--CCCe-------------------
Q 001999 152 HASKFPSHKEYVETLEKHL-SSGGLKKICICGPLGVGKTTIMENSHDSV-GES-G--RFDI------------------- 207 (984)
Q Consensus 152 ~~~~~vgr~~~~~~l~~~L-~~~~~~vi~I~G~gGiGKTtLa~~~~~~~-~~~-~--~F~~------------------- 207 (984)
...+++|.+..++.+.+++ ..+..+.+.|+|+.|+||||+|+.....+ ... . .++.
T Consensus 12 ~~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~ 91 (354)
T 1sxj_E 12 SLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSP 91 (354)
T ss_dssp SGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECS
T ss_pred CHHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeeccc
Confidence 3466899999999999998 66555559999999999999999855532 100 0 0110
Q ss_pred -EEEEEeCCCC-CHHHHHHHHHHHhccCccccchHHHHHHHHHHHcCCcEEEEEECCCCccc--hhhh--ccccCCCCcE
Q 001999 208 -IFWVNVNTDG-NISDIQEIILERLKVNAKELDNAQRADNISKELKDKRYVLFLDGVSSEIN--FKEI--GIHDDHGRGK 281 (984)
Q Consensus 208 -~~wv~vs~~~-~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~--~~~~--~~~~~~~gs~ 281 (984)
.+.+..+... ......+++++.+.....- .... .+ ..+.+++-++|+|++..... ...+ .+.....+..
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~-~l-s~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~ 166 (354)
T 1sxj_E 92 YHLEITPSDMGNNDRIVIQELLKEVAQMEQV---DFQD-SK-DGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIR 166 (354)
T ss_dssp SEEEECCC----CCHHHHHHHHHHHTTTTC-----------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEE
T ss_pred ceEEecHhhcCCcchHHHHHHHHHHHHhccc---cccc-cc-cccCCCCeEEEEeCccccCHHHHHHHHHHHHhhcCCCE
Confidence 1111111100 0000122222222111000 0000 00 00234677999999987421 1122 1112234577
Q ss_pred EEEEcCCcc-ccc---cCCceEEccCCChHHHHHHHHHHhCCCC-CCCcchHHHHHHHHHHcCCCchHHHHHHH
Q 001999 282 VVFACRSRE-FCW---QADDVIHVERLSPREAKKLFWEVVGVNL-KKNPDIEQEADSIVEECGGMPYMLKLIGK 350 (984)
Q Consensus 282 ilvTTR~~~-v~~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~-~~~~~l~~~~~~I~~~c~GlPlai~~~~~ 350 (984)
+|++|.... +.. .....+++.+++.++....+.+.+.... .-+ -.+....|++.++|.+-.+..+..
T Consensus 167 ~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~l~~i~~~~~G~~r~a~~~l~ 238 (354)
T 1sxj_E 167 LIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLE--TKDILKRIAQASNGNLRVSLLMLE 238 (354)
T ss_dssp EEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEEC--CSHHHHHHHHHHTTCHHHHHHHHT
T ss_pred EEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCC--cHHHHHHHHHHcCCCHHHHHHHHH
Confidence 777776533 322 4558899999999999999988764331 111 024678899999999866554443
No 177
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.06 E-value=2.4e-05 Score=86.32 Aligned_cols=191 Identities=14% Similarity=0.123 Sum_probs=110.1
Q ss_pred CCCCCchHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHhhhhcccCCCC-CeEEEEEeCCCCCHHHHHHHHHHHhc
Q 001999 153 ASKFPSHKEYVETLEKHLSSGGLKKICICGPLGVGKTTIMENSHDSVGESGRF-DIIFWVNVNTDGNISDIQEIILERLK 231 (984)
Q Consensus 153 ~~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F-~~~~wv~vs~~~~~~~i~~~i~~~l~ 231 (984)
..+++|+++.++.+..++.....+.+.++|+.|+||||+|+.....+.....+ ...+.+..+.......+.. .+..+.
T Consensus 36 ~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 114 (353)
T 1sxj_D 36 LDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVRE-KVKNFA 114 (353)
T ss_dssp TTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHTT-HHHHHH
T ss_pred HHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHHHH-HHHHHh
Confidence 46789999999999999987655558999999999999999955443200001 1233344444333332222 221111
Q ss_pred cC-ccccchHHHHHHHHHHHcCCcEEEEEECCCCcc--chhhh--ccccCCCCcEEEEEcCCcc-ccc---cCCceEEcc
Q 001999 232 VN-AKELDNAQRADNISKELKDKRYVLFLDGVSSEI--NFKEI--GIHDDHGRGKVVFACRSRE-FCW---QADDVIHVE 302 (984)
Q Consensus 232 ~~-~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~--~~~~~--~~~~~~~gs~ilvTTR~~~-v~~---~~~~~~~l~ 302 (984)
.. ....... .....-.+++-+|++|++.... ....+ .+.......++|++|.... +.. .....+.+.
T Consensus 115 ~~~~~~~~~~----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i~~~ 190 (353)
T 1sxj_D 115 RLTVSKPSKH----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFK 190 (353)
T ss_dssp HSCCCCCCTT----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEEECC
T ss_pred hhcccccchh----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceEEeC
Confidence 10 0000000 0000012356799999986532 12222 1122334567777765433 222 334589999
Q ss_pred CCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCCchHHHHHHH
Q 001999 303 RLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGMPYMLKLIGK 350 (984)
Q Consensus 303 ~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~~~~ 350 (984)
+++.++....+.+.+.... ..--++..+.|++.++|.|..+..+..
T Consensus 191 ~~~~~~~~~~l~~~~~~~~--~~i~~~~l~~l~~~~~G~~r~~~~~l~ 236 (353)
T 1sxj_D 191 ALDASNAIDRLRFISEQEN--VKCDDGVLERILDISAGDLRRGITLLQ 236 (353)
T ss_dssp CCCHHHHHHHHHHHHHTTT--CCCCHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhC--CCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 9999999999988765431 111245788999999999976554443
No 178
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.05 E-value=0.00019 Score=75.23 Aligned_cols=177 Identities=11% Similarity=0.083 Sum_probs=99.6
Q ss_pred CCCCCchHHHHHHHHHHhc---c---------CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHH
Q 001999 153 ASKFPSHKEYVETLEKHLS---S---------GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNIS 220 (984)
Q Consensus 153 ~~~~vgr~~~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~ 220 (984)
-.+++|.+..++.+.+++. . ...+.+.|+|++|+|||++|+....... .. .+.+..+.-.+.
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~--~~---~~~~~~~~~~~~- 78 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQ--VP---FLAMAGAEFVEV- 78 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHT--CC---EEEEETTTTSSS-
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhC--CC---EEEechHHHHhh-
Confidence 3568999988877765542 1 2345688999999999999999776664 33 234444332110
Q ss_pred HHHHHHHHHhccCccccchHHHHHHHHHHHcCCcEEEEEECCCCcc-------------c----hhhhc--cc--cCCCC
Q 001999 221 DIQEIILERLKVNAKELDNAQRADNISKELKDKRYVLFLDGVSSEI-------------N----FKEIG--IH--DDHGR 279 (984)
Q Consensus 221 ~i~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~-------------~----~~~~~--~~--~~~~g 279 (984)
............+.........+|++||+.... . ...+. +. ....+
T Consensus 79 -------------~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~ 145 (262)
T 2qz4_A 79 -------------IGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDH 145 (262)
T ss_dssp -------------STTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCC
T ss_pred -------------ccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCC
Confidence 000011222223333334568999999997531 1 11110 11 12335
Q ss_pred cEEEEEcCCccccc-------cCCceEEccCCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCCch-HHHHHH
Q 001999 280 GKVVFACRSREFCW-------QADDVIHVERLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGMPY-MLKLIG 349 (984)
Q Consensus 280 s~ilvTTR~~~v~~-------~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~GlPl-ai~~~~ 349 (984)
..||.||....... .....+.+...+.++-.++++..+.... ...........+++.+.|.+- .+..+.
T Consensus 146 ~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~-~~~~~~~~~~~l~~~~~g~~~~~l~~l~ 222 (262)
T 2qz4_A 146 VIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLK-LTQSSTFYSQRLAELTPGFSGADIANIC 222 (262)
T ss_dssp EEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTT-CCBTHHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred EEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCC-CCcchhhHHHHHHHHCCCCCHHHHHHHH
Confidence 56666765543211 2346788999999999999988765331 112222234778888888754 444443
No 179
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.05 E-value=1.2e-05 Score=83.45 Aligned_cols=169 Identities=12% Similarity=0.144 Sum_probs=101.2
Q ss_pred CCCCch---HHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 001999 154 SKFPSH---KEYVETLEKHLSSGGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEIILERL 230 (984)
Q Consensus 154 ~~~vgr---~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l 230 (984)
.+++|. +..++.+..+......+.+.|+|++|+||||+|+...+... .....++|+..+.-.+. +.+.
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~--~~~~~~~~~~~~~~~~~------~~~~- 98 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARAN--ELERRSFYIPLGIHASI------STAL- 98 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEEGGGGGGS------CGGG-
T ss_pred hhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEEEHHHHHHH------HHHH-
Confidence 457763 35666666666655678899999999999999999665554 22334567765432110 0000
Q ss_pred ccCccccchHHHHHHHHHHHcCCcEEEEEECCCCccc----hhhh--ccc--cCCCCcEEEEEcCCccc------cc---
Q 001999 231 KVNAKELDNAQRADNISKELKDKRYVLFLDGVSSEIN----FKEI--GIH--DDHGRGKVVFACRSREF------CW--- 293 (984)
Q Consensus 231 ~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~----~~~~--~~~--~~~~gs~ilvTTR~~~v------~~--- 293 (984)
+ +.+ .++.+||+||++.... ...+ .+. ......++|+||+...- ..
T Consensus 99 ---------------~-~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~ 161 (242)
T 3bos_A 99 ---------------L-EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVS 161 (242)
T ss_dssp ---------------G-TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHH
T ss_pred ---------------H-Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhh
Confidence 0 001 3467899999975421 1112 111 11112257777764321 11
Q ss_pred --cCCceEEccCCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCCchHHHHHHH
Q 001999 294 --QADDVIHVERLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGMPYMLKLIGK 350 (984)
Q Consensus 294 --~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~~~~ 350 (984)
.....+.+.+++.++..+++.+.+.... ..--.+..+.|++.++|.+-.+..+..
T Consensus 162 r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~l~~~~~g~~r~l~~~l~ 218 (242)
T 3bos_A 162 RMHWGLTYQLQPMMDDEKLAALQRRAAMRG--LQLPEDVGRFLLNRMARDLRTLFDVLD 218 (242)
T ss_dssp HHHHSEEEECCCCCGGGHHHHHHHHHHHTT--CCCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HhhcCceEEeCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHccCCHHHHHHHHH
Confidence 1227899999999999999988765321 111245778899999998866654443
No 180
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.05 E-value=1.5e-05 Score=90.23 Aligned_cols=196 Identities=13% Similarity=0.137 Sum_probs=114.1
Q ss_pred CCCC-chH--HHHHHHHHHhccCC-ccEEEEEcCCCChHHHHHHHhhhhcccCCCC--CeEEEEEeCCCCCHHHHHHHHH
Q 001999 154 SKFP-SHK--EYVETLEKHLSSGG-LKKICICGPLGVGKTTIMENSHDSVGESGRF--DIIFWVNVNTDGNISDIQEIIL 227 (984)
Q Consensus 154 ~~~v-gr~--~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F--~~~~wv~vs~~~~~~~i~~~i~ 227 (984)
.+|+ |.. .....+......+. ...+.|+|++|+||||||+.....+. ..+ ..+++++.+ .+..++.
T Consensus 105 d~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~--~~~~~~~v~~v~~~------~~~~~~~ 176 (440)
T 2z4s_A 105 ENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVV--QNEPDLRVMYITSE------KFLNDLV 176 (440)
T ss_dssp GGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHH--HHCCSSCEEEEEHH------HHHHHHH
T ss_pred hhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHH--HhCCCCeEEEeeHH------HHHHHHH
Confidence 3455 633 33444444444433 67899999999999999999666553 222 134555433 3444444
Q ss_pred HHhccCccccchHHHHHHHHHHHcCCcEEEEEECCCCccc---h-hhh--ccc-cCCCCcEEEEEcCCccc-----cc--
Q 001999 228 ERLKVNAKELDNAQRADNISKELKDKRYVLFLDGVSSEIN---F-KEI--GIH-DDHGRGKVVFACRSREF-----CW-- 293 (984)
Q Consensus 228 ~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~---~-~~~--~~~-~~~~gs~ilvTTR~~~v-----~~-- 293 (984)
..+.... ...+.+.+..+.-+|++||+..... . +.+ .+. ....|..||+||....- ..
T Consensus 177 ~~~~~~~--------~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L 248 (440)
T 2z4s_A 177 DSMKEGK--------LNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRL 248 (440)
T ss_dssp HHHHTTC--------HHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHH
T ss_pred HHHHccc--------HHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHH
Confidence 4443211 1223344444678999999975431 2 122 111 13456788988876321 11
Q ss_pred ----cCCceEEccCCChHHHHHHHHHHhCCC-CCCCcchHHHHHHHHHHcCCCchHHHHHHHHh------hcC-ccHHHH
Q 001999 294 ----QADDVIHVERLSPREAKKLFWEVVGVN-LKKNPDIEQEADSIVEECGGMPYMLKLIGKEL------VNQ-SEVAIW 361 (984)
Q Consensus 294 ----~~~~~~~l~~L~~~~~~~Lf~~~~~~~-~~~~~~l~~~~~~I~~~c~GlPlai~~~~~~l------~~~-~~~~~w 361 (984)
.....+.+.+++.++-..++.+.+... ..-++ ++...|++.++|.+-.+..+...+ .++ .+.+.+
T Consensus 249 ~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~---e~l~~la~~~~gn~R~l~~~L~~~~~~a~~~~~~It~~~~ 325 (440)
T 2z4s_A 249 VSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPE---EVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVDLKEA 325 (440)
T ss_dssp HHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCT---THHHHHHHHCCSCHHHHHHHHHHHHHHHHHSSSCCCHHHH
T ss_pred HhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 334678999999999999998877432 11222 356788899999886554332221 122 566677
Q ss_pred HHHHHHh
Q 001999 362 RATVDDL 368 (984)
Q Consensus 362 ~~~l~~l 368 (984)
+.++..+
T Consensus 326 ~~~l~~~ 332 (440)
T 2z4s_A 326 ILLLKDF 332 (440)
T ss_dssp HHHTSTT
T ss_pred HHHHHHH
Confidence 7666553
No 181
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.01 E-value=0.0003 Score=75.31 Aligned_cols=176 Identities=12% Similarity=0.090 Sum_probs=102.1
Q ss_pred CCCCCchHHHHHHHHHHhcc------------CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHH
Q 001999 153 ASKFPSHKEYVETLEKHLSS------------GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNIS 220 (984)
Q Consensus 153 ~~~~vgr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~ 220 (984)
-.+++|.+..++.+.+++.. ...+.+.|+|++|+||||+|+....... .. .+.++.+.-..
T Consensus 20 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~--~~---~~~i~~~~l~~-- 92 (297)
T 3b9p_A 20 WTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECS--AT---FLNISAASLTS-- 92 (297)
T ss_dssp GGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTT--CE---EEEEESTTTSS--
T ss_pred HHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhC--CC---eEEeeHHHHhh--
Confidence 35689999999999887732 2357889999999999999999776654 22 23344333211
Q ss_pred HHHHHHHHHhccCccccchHHHHHHHHHHHcCCcEEEEEECCCCccc------------h-hhh-----ccccC--CCCc
Q 001999 221 DIQEIILERLKVNAKELDNAQRADNISKELKDKRYVLFLDGVSSEIN------------F-KEI-----GIHDD--HGRG 280 (984)
Q Consensus 221 ~i~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~------------~-~~~-----~~~~~--~~gs 280 (984)
.............+......++.+|++|++..... . ..+ ..+.. ..+.
T Consensus 93 ------------~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v 160 (297)
T 3b9p_A 93 ------------KYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRI 160 (297)
T ss_dssp ------------SSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CE
T ss_pred ------------cccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcE
Confidence 00001111112222223346788999999964310 0 011 11211 2345
Q ss_pred EEEEEcCCccccc-----cCCceEEccCCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCCch-HHHHHH
Q 001999 281 KVVFACRSREFCW-----QADDVIHVERLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGMPY-MLKLIG 349 (984)
Q Consensus 281 ~ilvTTR~~~v~~-----~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~GlPl-ai~~~~ 349 (984)
.||.||....... .....+.+...+.++-..++...+...... --.+....|++.+.|.+- ++..+.
T Consensus 161 ~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~--~~~~~~~~la~~~~g~~~~~l~~l~ 233 (297)
T 3b9p_A 161 VVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSP--LDTEALRRLAKITDGYSGSDLTALA 233 (297)
T ss_dssp EEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCC--SCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 5666666543222 445678888888888888888776543111 113466788899999875 444443
No 182
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.99 E-value=0.00021 Score=77.47 Aligned_cols=175 Identities=15% Similarity=0.135 Sum_probs=104.1
Q ss_pred CCCCCchHHHHHHHHHHhcc------------CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHH
Q 001999 153 ASKFPSHKEYVETLEKHLSS------------GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNIS 220 (984)
Q Consensus 153 ~~~~vgr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~ 220 (984)
-.+++|.+..++.|.+.+.- ...+.+.++|++|+|||++|+....... ..| +.++.+
T Consensus 17 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~--~~~---~~v~~~------ 85 (322)
T 3eie_A 17 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN--STF---FSVSSS------ 85 (322)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHT--CEE---EEEEHH------
T ss_pred HHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHC--CCE---EEEchH------
Confidence 45689999999999887721 2245789999999999999999777665 332 223221
Q ss_pred HHHHHHHHHhccCccccchHHHHHHH-HHHHcCCcEEEEEECCCCccc-------------hhhh-----ccccCCCCcE
Q 001999 221 DIQEIILERLKVNAKELDNAQRADNI-SKELKDKRYVLFLDGVSSEIN-------------FKEI-----GIHDDHGRGK 281 (984)
Q Consensus 221 ~i~~~i~~~l~~~~~~~~~~~~~~~l-~~~L~~kr~LlVlDdv~~~~~-------------~~~~-----~~~~~~~gs~ 281 (984)
.+ .. ..... .+.....+ ...-..++.+|++|++..... ...+ .+.....+..
T Consensus 86 ~l----~~----~~~g~-~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~ 156 (322)
T 3eie_A 86 DL----VS----KWMGE-SEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVL 156 (322)
T ss_dssp HH----HT----TTGGG-HHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEE
T ss_pred HH----hh----cccch-HHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceE
Confidence 11 11 00111 12222222 223345778999999974311 1111 1112344556
Q ss_pred EEEEcCCccccc-----cCCceEEccCCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCC-chHHHHHH
Q 001999 282 VVFACRSREFCW-----QADDVIHVERLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGM-PYMLKLIG 349 (984)
Q Consensus 282 ilvTTR~~~v~~-----~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~Gl-Plai~~~~ 349 (984)
||.||....... .....+.+...+.++-.++++..+....... -......|++.+.|. +-.|..+.
T Consensus 157 vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~--~~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 157 VLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVL--TKEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp EEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCC--CHHHHHHHHHTTTTCCHHHHHHHH
T ss_pred EEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCC--CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 666776543322 4556788999999999999999876542111 133567888888874 44444433
No 183
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.98 E-value=0.00027 Score=76.39 Aligned_cols=177 Identities=15% Similarity=0.155 Sum_probs=103.1
Q ss_pred CCCCCchHHHHHHHHHHhcc------------CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHH
Q 001999 153 ASKFPSHKEYVETLEKHLSS------------GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNIS 220 (984)
Q Consensus 153 ~~~~vgr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~ 220 (984)
-.+++|.++.++.|.+.+.- ...+.|.++|++|+|||+||+........ . ..+.+..+.-.+
T Consensus 11 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~-~---~~~~i~~~~l~~-- 84 (322)
T 1xwi_A 11 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN-S---TFFSISSSDLVS-- 84 (322)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTS-C---EEEEEECCSSCC--
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCC-C---cEEEEEhHHHHh--
Confidence 35689999988888776631 23467899999999999999997766520 2 223344332111
Q ss_pred HHHHHHHHHhccCccccchHHHHHHHHH-HHcCCcEEEEEECCCCcc--------c-----hhhh-----ccccCCCCcE
Q 001999 221 DIQEIILERLKVNAKELDNAQRADNISK-ELKDKRYVLFLDGVSSEI--------N-----FKEI-----GIHDDHGRGK 281 (984)
Q Consensus 221 ~i~~~i~~~l~~~~~~~~~~~~~~~l~~-~L~~kr~LlVlDdv~~~~--------~-----~~~~-----~~~~~~~gs~ 281 (984)
...... +.....+.+ .-..++.+|++|++.... . ...+ .+.....+..
T Consensus 85 ------------~~~g~~-~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~ 151 (322)
T 1xwi_A 85 ------------KWLGES-EKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGIL 151 (322)
T ss_dssp ------------SSCCSC-HHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEE
T ss_pred ------------hhhhHH-HHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEE
Confidence 001111 222222322 234678999999997531 0 0111 1111234445
Q ss_pred EEEEcCCccccc-----cCCceEEccCCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCCc-hHHHHHHH
Q 001999 282 VVFACRSREFCW-----QADDVIHVERLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGMP-YMLKLIGK 350 (984)
Q Consensus 282 ilvTTR~~~v~~-----~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~GlP-lai~~~~~ 350 (984)
||.||....... .....+.+...+.++-.++++.++....... -......|++.+.|.. -.+..+..
T Consensus 152 vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l--~~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 152 VLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSL--TEADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp EEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCC--CHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred EEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCC--CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 555665443222 4556788999999999999988775432111 1345678888888864 34544443
No 184
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.98 E-value=0.00023 Score=78.27 Aligned_cols=176 Identities=16% Similarity=0.125 Sum_probs=102.9
Q ss_pred CCCCCchHHHHHHHHHHhcc------------CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHH
Q 001999 153 ASKFPSHKEYVETLEKHLSS------------GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNIS 220 (984)
Q Consensus 153 ~~~~vgr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~ 220 (984)
..+++|.+..++.|.+.+.. ...+.|.|+|++|+|||++|+....... .. .+.++.+.-..
T Consensus 83 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~--~~---~~~i~~~~l~~-- 155 (357)
T 3d8b_A 83 WEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSG--AT---FFSISASSLTS-- 155 (357)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTT--CE---EEEEEGGGGCC--
T ss_pred HHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcC--Ce---EEEEehHHhhc--
Confidence 35689999999999887742 3467899999999999999999776654 22 34444432111
Q ss_pred HHHHHHHHHhccCccccchHHHHHHH-HHHHcCCcEEEEEECCCCcc-------------chhhh-----ccc-cCCCCc
Q 001999 221 DIQEIILERLKVNAKELDNAQRADNI-SKELKDKRYVLFLDGVSSEI-------------NFKEI-----GIH-DDHGRG 280 (984)
Q Consensus 221 ~i~~~i~~~l~~~~~~~~~~~~~~~l-~~~L~~kr~LlVlDdv~~~~-------------~~~~~-----~~~-~~~~gs 280 (984)
..... .......+ ...-..++.+|+||++.... ....+ ... ....+.
T Consensus 156 ------------~~~g~-~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v 222 (357)
T 3d8b_A 156 ------------KWVGE-GEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRI 222 (357)
T ss_dssp ------------SSTTH-HHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCE
T ss_pred ------------cccch-HHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCE
Confidence 00000 11122222 22224678999999984320 01111 111 112344
Q ss_pred EEEEEcCCccccc-----cCCceEEccCCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCC-CchHHHHHHH
Q 001999 281 KVVFACRSREFCW-----QADDVIHVERLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGG-MPYMLKLIGK 350 (984)
Q Consensus 281 ~ilvTTR~~~v~~-----~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~G-lPlai~~~~~ 350 (984)
.||.||....... .....+.+...+.++..+++...+...... --.+..+.|++.+.| .+-.+..+..
T Consensus 223 ~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~--l~~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 223 LVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCC--LSEEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp EEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBC--CCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCC--ccHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 5565665433222 444578899999999999998876433111 113567888999988 4455555443
No 185
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.96 E-value=0.00015 Score=76.66 Aligned_cols=163 Identities=10% Similarity=0.085 Sum_probs=89.3
Q ss_pred CCCCchHHHHHHHHH-------Hhc---cCCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHH
Q 001999 154 SKFPSHKEYVETLEK-------HLS---SGGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQ 223 (984)
Q Consensus 154 ~~~vgr~~~~~~l~~-------~L~---~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~ 223 (984)
..++|....++++++ .+. ......+.|+|++|+|||++|+...+... ..| +.+..+..
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~--~~~---~~i~~~~~------- 100 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESN--FPF---IKICSPDK------- 100 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHT--CSE---EEEECGGG-------
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhC--CCE---EEEeCHHH-------
Confidence 457888777666655 332 24567889999999999999999666654 332 22222210
Q ss_pred HHHHHHhccCccccchHHHHHHHHHHHcCCcEEEEEECCCCc-----------cch-hhh--ccc---cCCCCcEEEEEc
Q 001999 224 EIILERLKVNAKELDNAQRADNISKELKDKRYVLFLDGVSSE-----------INF-KEI--GIH---DDHGRGKVVFAC 286 (984)
Q Consensus 224 ~~i~~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~-----------~~~-~~~--~~~---~~~~gs~ilvTT 286 (984)
+...............+......+..+|++||+... ..+ ..+ .+. .......||.||
T Consensus 101 ------~~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~tt 174 (272)
T 1d2n_A 101 ------MIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTT 174 (272)
T ss_dssp ------CTTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEE
T ss_pred ------hcCCchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEec
Confidence 000000000012222333334467899999998542 111 111 011 122333466677
Q ss_pred CCccccc------cCCceEEccCCCh-HHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCC
Q 001999 287 RSREFCW------QADDVIHVERLSP-REAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGM 341 (984)
Q Consensus 287 R~~~v~~------~~~~~~~l~~L~~-~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~Gl 341 (984)
....... .....+.+++++. ++-..++.+... . -.+....|++.+.|.
T Consensus 175 n~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~~----~---~~~~~~~l~~~~~g~ 229 (272)
T 1d2n_A 175 SRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLGN----F---KDKERTTIAQQVKGK 229 (272)
T ss_dssp SCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHTC----S---CHHHHHHHHHHHTTS
T ss_pred CChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcCC----C---CHHHHHHHHHHhcCC
Confidence 6653211 3356789999998 666666655311 1 134677888888873
No 186
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.91 E-value=1.8e-05 Score=86.92 Aligned_cols=139 Identities=17% Similarity=0.167 Sum_probs=77.6
Q ss_pred HhhcCCCccEEeccCCCCccCCcchhcccccCeEecCCCcccccCchhhh--ccCCCcEEEecCc--c------ccccch
Q 001999 539 FFEYMCHLQLLDLHDTSIRCLPPSISRLINLNALFLRSCSLLFQLPKEIR--YLQKLEILDVRHT--R------IQCLPS 608 (984)
Q Consensus 539 ~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~--~L~~L~~L~l~~~--~------l~~lp~ 608 (984)
++..+++|+.|+|+++.-..++. + .+.+|++|.|..|..-......++ .+++|++|+|+.+ . +..+..
T Consensus 167 ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~ 244 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP 244 (362)
T ss_dssp HHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG
T ss_pred HHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH
Confidence 36677888888888773224444 3 377888888876542111112233 6788888887532 1 222222
Q ss_pred hh--hccCCCCeeecccccccCccccCCCCCCcccchhhh--hccccccceeeeecCCchhHHhhhhhhhHHHhhccCCC
Q 001999 609 EI--GQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSNII--SKLCLLEELIIEVLDPSDRRWKQNVESIAGEIAALEQL 684 (984)
Q Consensus 609 ~~--~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l--~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L 684 (984)
.+ ..+++|++|++. .|.... ..+.... ..+++|++|+++....... ...++...+..+++|
T Consensus 245 ~l~~~~~p~Lr~L~L~-----~~~i~~------~~~~~la~a~~~~~L~~LdLs~n~L~d~----G~~~L~~~L~~l~~L 309 (362)
T 2ra8_A 245 LFSKDRFPNLKWLGIV-----DAEEQN------VVVEMFLESDILPQLETMDISAGVLTDE----GARLLLDHVDKIKHL 309 (362)
T ss_dssp GSCTTTCTTCCEEEEE-----SCTTHH------HHHHHHHHCSSGGGCSEEECCSSCCBHH----HHHHHHTTHHHHTTC
T ss_pred HHhcCCCCCcCEEeCC-----CCCCch------HHHHHHHhCccCCCCCEEECCCCCCChH----HHHHHHhhcccCCcc
Confidence 22 247788888887 332211 1111111 2477888888875443321 122344455677888
Q ss_pred ceEEEecCCc
Q 001999 685 TTLHFYFPTI 694 (984)
Q Consensus 685 ~~L~l~~~~~ 694 (984)
+.|+++.+.+
T Consensus 310 ~~L~L~~n~i 319 (362)
T 2ra8_A 310 KFINMKYNYL 319 (362)
T ss_dssp SEEECCSBBC
T ss_pred eEEECCCCcC
Confidence 8888876643
No 187
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.90 E-value=0.00015 Score=78.85 Aligned_cols=178 Identities=12% Similarity=0.069 Sum_probs=103.8
Q ss_pred CCCCCCchHHHHHHHHHHhccCCc-cEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 001999 152 HASKFPSHKEYVETLEKHLSSGGL-KKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEIILERL 230 (984)
Q Consensus 152 ~~~~~vgr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l 230 (984)
.-.+++|.++.++.+.+++..+.. .++.+.|++|+|||++|+...+.+. ...+.++.+. .....+. +++...
T Consensus 24 ~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~-----~~~~~i~~~~-~~~~~i~-~~~~~~ 96 (324)
T 3u61_B 24 TIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVN-----ADMMFVNGSD-CKIDFVR-GPLTNF 96 (324)
T ss_dssp STTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTT-----EEEEEEETTT-CCHHHHH-THHHHH
T ss_pred CHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhC-----CCEEEEcccc-cCHHHHH-HHHHHH
Confidence 346789999999999999987544 5677788899999999999766653 1244555443 2222222 211111
Q ss_pred ccCccccchHHHHHHHHHHHcCCcEEEEEECCCCcc---chhhh--ccccCCCCcEEEEEcCCcc-ccc---cCCceEEc
Q 001999 231 KVNAKELDNAQRADNISKELKDKRYVLFLDGVSSEI---NFKEI--GIHDDHGRGKVVFACRSRE-FCW---QADDVIHV 301 (984)
Q Consensus 231 ~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~---~~~~~--~~~~~~~gs~ilvTTR~~~-v~~---~~~~~~~l 301 (984)
..... ..+++.+||+||+.... ....+ .+.....+.++|+||.... +.. .....+++
T Consensus 97 ~~~~~--------------~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~i~~ 162 (324)
T 3u61_B 97 ASAAS--------------FDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRVITF 162 (324)
T ss_dssp HHBCC--------------CSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEEEEC
T ss_pred Hhhcc--------------cCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcEEEe
Confidence 00000 12478899999998753 22222 1112224567777776543 222 33458999
Q ss_pred cCCChHHHHHHH-------HHHhCCC-CCCCcchHHHHHHHHHHcCCCchHHHHHHHHh
Q 001999 302 ERLSPREAKKLF-------WEVVGVN-LKKNPDIEQEADSIVEECGGMPYMLKLIGKEL 352 (984)
Q Consensus 302 ~~L~~~~~~~Lf-------~~~~~~~-~~~~~~l~~~~~~I~~~c~GlPlai~~~~~~l 352 (984)
.+++.++-.+++ .+.+... ...++ .+....|++.++|.+-.+......+
T Consensus 163 ~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~--~~~~~~l~~~~~gd~R~a~~~L~~~ 219 (324)
T 3u61_B 163 GQPTDEDKIEMMKQMIRRLTEICKHEGIAIAD--MKVVAALVKKNFPDFRKTIGELDSY 219 (324)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSC--HHHHHHHHHHTCSCTTHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCc--HHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 999988743332 2222221 11111 2577889999999876544433333
No 188
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.90 E-value=0.00023 Score=78.85 Aligned_cols=192 Identities=11% Similarity=0.059 Sum_probs=102.1
Q ss_pred CCCCCchHHHHHH---HHHHhccCCc--cEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEe----CCCCCHHHHH
Q 001999 153 ASKFPSHKEYVET---LEKHLSSGGL--KKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNV----NTDGNISDIQ 223 (984)
Q Consensus 153 ~~~~vgr~~~~~~---l~~~L~~~~~--~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~v----s~~~~~~~i~ 223 (984)
..+++|++..++. +.+.+..... +.+.|+|++|+|||++|+...+... .... .+.+.. +.........
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~--~~~~-~~~~~~~~~~~~~~~~~~~~ 119 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALG--PDTP-FTAIAGSEIFSLEMSKTEAL 119 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHC--SSCC-EEEEEGGGGSCSSSCHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhc--ccCC-cccccchhhhhcccchhHHH
Confidence 4578999988766 4455554433 5899999999999999999777765 2221 122221 2223344444
Q ss_pred HHHHHHhcc-C---------------------------ccc---cchHHHHHHHHHHH-----cCC----cEEEEEECCC
Q 001999 224 EIILERLKV-N---------------------------AKE---LDNAQRADNISKEL-----KDK----RYVLFLDGVS 263 (984)
Q Consensus 224 ~~i~~~l~~-~---------------------------~~~---~~~~~~~~~l~~~L-----~~k----r~LlVlDdv~ 263 (984)
.+.+..... . ... .........+.+.. .++ +.+|++|++.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~ 199 (368)
T 3uk6_A 120 TQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVH 199 (368)
T ss_dssp HHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGG
T ss_pred HHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhcc
Confidence 443333110 0 000 00122222222211 244 3599999997
Q ss_pred Ccc--chhhhc-cccCCCCcEEEEEcC-Cc------------cccc---cCCceEEccCCChHHHHHHHHHHhCCCCCCC
Q 001999 264 SEI--NFKEIG-IHDDHGRGKVVFACR-SR------------EFCW---QADDVIHVERLSPREAKKLFWEVVGVNLKKN 324 (984)
Q Consensus 264 ~~~--~~~~~~-~~~~~~gs~ilvTTR-~~------------~v~~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~ 324 (984)
... ....+. .-.......++++|. .. .+.. .....+.+.+++.++..+++.+.+.... .
T Consensus 200 ~l~~~~~~~L~~~le~~~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~~--~ 277 (368)
T 3uk6_A 200 MLDIESFSFLNRALESDMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEED--V 277 (368)
T ss_dssp GSBHHHHHHHHHHTTCTTCCEEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHHTT--C
T ss_pred ccChHHHHHHHHHhhCcCCCeeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHHcC--C
Confidence 642 122220 011122223444442 11 1111 3344589999999999999998765431 1
Q ss_pred cchHHHHHHHHHHcC-CCchHHHHHH
Q 001999 325 PDIEQEADSIVEECG-GMPYMLKLIG 349 (984)
Q Consensus 325 ~~l~~~~~~I~~~c~-GlPlai~~~~ 349 (984)
.--.+..+.|++.+. |.|-.+..+.
T Consensus 278 ~~~~~~l~~l~~~~~~G~~r~~~~ll 303 (368)
T 3uk6_A 278 EMSEDAYTVLTRIGLETSLRYAIQLI 303 (368)
T ss_dssp CBCHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcCCCHHHHHHHH
Confidence 122456788888887 7776554433
No 189
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.89 E-value=0.00016 Score=80.97 Aligned_cols=103 Identities=7% Similarity=0.144 Sum_probs=66.8
Q ss_pred CCCcC-ceeEEEecCcccCCCcchHhhcCCCccEEeccCC---CCccCC-cchhcccccCeEecCCCcccccCch-hhhc
Q 001999 516 MPNCC-EILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDT---SIRCLP-PSISRLINLNALFLRSCSLLFQLPK-EIRY 589 (984)
Q Consensus 516 ~~~~~-~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~---~i~~lp-~~i~~l~~L~~L~L~~c~~l~~lp~-~i~~ 589 (984)
+.+++ .|+++.+.. .++.+....|.++.+|+.+.++.+ .++.+. ..+..+.+|+.+.+.. .++.++. .+..
T Consensus 59 F~~~~~~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~--~~~~I~~~aF~~ 135 (394)
T 4gt6_A 59 FCNYKYVLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILD--SVTEIDSEAFHH 135 (394)
T ss_dssp TTTCCSCCCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGT--TCSEECTTTTTT
T ss_pred ccCCCCcCEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCC--ccceehhhhhhh
Confidence 44553 477777764 377777777888888888888765 355663 3566777787777654 2444443 3567
Q ss_pred cCCCcEEEecCccccccch-hhhccCCCCeeecc
Q 001999 590 LQKLEILDVRHTRIQCLPS-EIGQLIKLKCLRVS 622 (984)
Q Consensus 590 L~~L~~L~l~~~~l~~lp~-~~~~L~~L~~L~l~ 622 (984)
+.+|+.+.+..+ +..++. .+..+.+|+.+.+.
T Consensus 136 c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~ 168 (394)
T 4gt6_A 136 CEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLP 168 (394)
T ss_dssp CTTCCEEECCTT-CCEECTTTTTTCTTCCEEECC
T ss_pred hcccccccccce-eeeecccceeccccccccccc
Confidence 778888887543 333332 35667777777765
No 190
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.84 E-value=0.00059 Score=76.09 Aligned_cols=174 Identities=13% Similarity=0.101 Sum_probs=100.4
Q ss_pred CCCCCchHHHHHHHHHHhcc------------CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHH
Q 001999 153 ASKFPSHKEYVETLEKHLSS------------GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNIS 220 (984)
Q Consensus 153 ~~~~vgr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~ 220 (984)
..+++|.+..++.|.+++.. ...+-+.|+|+.|+|||++|+....... .. .+.++.+.-...
T Consensus 114 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~--~~---~~~v~~~~l~~~- 187 (389)
T 3vfd_A 114 FDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESN--AT---FFNISAASLTSK- 187 (389)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTT--CE---EEEECSCCC----
T ss_pred hHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhc--Cc---EEEeeHHHhhcc-
Confidence 45789999999999888732 2346889999999999999999766654 22 233333321110
Q ss_pred HHHHHHHHHhccCccccchHHHHHHHH-HHHcCCcEEEEEECCCCc--------cc-----hhhh-----ccc-cCCCCc
Q 001999 221 DIQEIILERLKVNAKELDNAQRADNIS-KELKDKRYVLFLDGVSSE--------IN-----FKEI-----GIH-DDHGRG 280 (984)
Q Consensus 221 ~i~~~i~~~l~~~~~~~~~~~~~~~l~-~~L~~kr~LlVlDdv~~~--------~~-----~~~~-----~~~-~~~~gs 280 (984)
. .... ......+. ..-.....+|+||++... .. ...+ +.. ......
T Consensus 188 -~------------~g~~-~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v 253 (389)
T 3vfd_A 188 -Y------------VGEG-EKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRV 253 (389)
T ss_dssp -----------------C-HHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CE
T ss_pred -c------------cchH-HHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCE
Confidence 0 0000 11222222 222346689999999643 00 0111 111 112334
Q ss_pred EEEEEcCCccccc-----cCCceEEccCCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCCch-HHHHH
Q 001999 281 KVVFACRSREFCW-----QADDVIHVERLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGMPY-MLKLI 348 (984)
Q Consensus 281 ~ilvTTR~~~v~~-----~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~GlPl-ai~~~ 348 (984)
.||.||....... .....+.+...+.++-.+++...+.... ..-..+....|++.+.|..- ++..+
T Consensus 254 ~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~--~~l~~~~~~~la~~~~g~~~~~l~~L 325 (389)
T 3vfd_A 254 LVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQG--SPLTQKELAQLARMTDGYSGSDLTAL 325 (389)
T ss_dssp EEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSC--CCSCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred EEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 5555665433222 3445788999999999999988876531 11123467789999988654 44444
No 191
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.83 E-value=0.00049 Score=75.53 Aligned_cols=175 Identities=15% Similarity=0.129 Sum_probs=101.6
Q ss_pred CCCCCchHHHHHHHHHHhcc------------CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHH
Q 001999 153 ASKFPSHKEYVETLEKHLSS------------GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNIS 220 (984)
Q Consensus 153 ~~~~vgr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~ 220 (984)
..+++|.+..++.|.+.+.. ...+-|.++|++|+|||+||+....... ..| +.+..+
T Consensus 50 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~--~~~---~~v~~~------ 118 (355)
T 2qp9_X 50 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN--STF---FSVSSS------ 118 (355)
T ss_dssp GGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHT--CEE---EEEEHH------
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC--CCE---EEeeHH------
Confidence 35689999999998887631 1234688999999999999999777665 322 223221
Q ss_pred HHHHHHHHHhccCccccchHHHHHHHH-HHHcCCcEEEEEECCCCccc-------------hhhh-----ccccCCCCcE
Q 001999 221 DIQEIILERLKVNAKELDNAQRADNIS-KELKDKRYVLFLDGVSSEIN-------------FKEI-----GIHDDHGRGK 281 (984)
Q Consensus 221 ~i~~~i~~~l~~~~~~~~~~~~~~~l~-~~L~~kr~LlVlDdv~~~~~-------------~~~~-----~~~~~~~gs~ 281 (984)
.+. .. ..... +.....+. ..-..++.+|++|++..... ...+ .+.....+..
T Consensus 119 ~l~----~~----~~g~~-~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~ 189 (355)
T 2qp9_X 119 DLV----SK----WMGES-EKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVL 189 (355)
T ss_dssp HHH----SC----C---C-HHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEE
T ss_pred HHh----hh----hcchH-HHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeE
Confidence 111 10 00111 22222222 22346789999999975310 1111 1111234455
Q ss_pred EEEEcCCccccc-----cCCceEEccCCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCC-chHHHHHH
Q 001999 282 VVFACRSREFCW-----QADDVIHVERLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGM-PYMLKLIG 349 (984)
Q Consensus 282 ilvTTR~~~v~~-----~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~Gl-Plai~~~~ 349 (984)
||.||....... .....+.+...+.++-.++++..+....... -......|++.+.|. +-.|..+.
T Consensus 190 vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~--~~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 190 VLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVL--TKEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp EEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCC--CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCC--CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 666665543222 4557788999999999999988876442111 134567888888884 44444443
No 192
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.83 E-value=3.4e-05 Score=76.16 Aligned_cols=47 Identities=21% Similarity=0.195 Sum_probs=40.8
Q ss_pred CCCCCchHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHhhhhc
Q 001999 153 ASKFPSHKEYVETLEKHLSSGGLKKICICGPLGVGKTTIMENSHDSV 199 (984)
Q Consensus 153 ~~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~ 199 (984)
..+++||+.+++.+.+.+.....+.+.|+|++|+||||+|+...+..
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 21 LDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred cchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999987667788999999999999999965554
No 193
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.80 E-value=0.0002 Score=78.34 Aligned_cols=176 Identities=12% Similarity=0.158 Sum_probs=102.8
Q ss_pred CCCCCchHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHhhhhcccCCCCC-eEEEEEeCCCCCHHHHHHHHHHHhc
Q 001999 153 ASKFPSHKEYVETLEKHLSSGGLKKICICGPLGVGKTTIMENSHDSVGESGRFD-IIFWVNVNTDGNISDIQEIILERLK 231 (984)
Q Consensus 153 ~~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~-~~~wv~vs~~~~~~~i~~~i~~~l~ 231 (984)
..+++|.+..++.|..++..++.+.+.++|+.|+||||+|+.....+.. ..+. ...-++.+....+..+.. ++..+.
T Consensus 24 ~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~-~~~~~~~~~~~~~~~~~~~~ir~-~i~~~~ 101 (340)
T 1sxj_C 24 LDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG-KNYSNMVLELNASDDRGIDVVRN-QIKDFA 101 (340)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT-TSHHHHEEEECTTSCCSHHHHHT-HHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcC-CCccceEEEEcCcccccHHHHHH-HHHHHH
Confidence 3567899999999988888776656999999999999999996555431 1111 122233333222222211 111111
Q ss_pred cCccccchHHHHHHHHHHHcCCcEEEEEECCCCcc--chhhh--ccccCCCCcEEEEEcCCcc-ccc---cCCceEEccC
Q 001999 232 VNAKELDNAQRADNISKELKDKRYVLFLDGVSSEI--NFKEI--GIHDDHGRGKVVFACRSRE-FCW---QADDVIHVER 303 (984)
Q Consensus 232 ~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~--~~~~~--~~~~~~~gs~ilvTTR~~~-v~~---~~~~~~~l~~ 303 (984)
.... ...+.+-++|+|++.... ....+ .+.......++|++|.... +.. .....+.+.+
T Consensus 102 ~~~~-------------~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~~ 168 (340)
T 1sxj_C 102 STRQ-------------IFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQP 168 (340)
T ss_dssp HBCC-------------SSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCC
T ss_pred hhcc-------------cCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEeccC
Confidence 0000 012347889999986532 22222 1112234556666664432 222 4456899999
Q ss_pred CChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCCchHH
Q 001999 304 LSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGMPYML 345 (984)
Q Consensus 304 L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~GlPlai 345 (984)
++.++..+.+.+.+.... ..--++..+.|++.++|.+--+
T Consensus 169 l~~~~~~~~l~~~~~~~~--~~i~~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 169 LPQEAIERRIANVLVHEK--LKLSPNAEKALIELSNGDMRRV 208 (340)
T ss_dssp CCHHHHHHHHHHHHHTTT--CCBCHHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHH
Confidence 999999988887764321 1111446788899999987643
No 194
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.77 E-value=0.00014 Score=78.53 Aligned_cols=150 Identities=14% Similarity=0.098 Sum_probs=83.8
Q ss_pred CCCchHHHHHHHHHHhc---------------cCCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCH
Q 001999 155 KFPSHKEYVETLEKHLS---------------SGGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNI 219 (984)
Q Consensus 155 ~~vgr~~~~~~l~~~L~---------------~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~ 219 (984)
+++|.+..++.|.+++. ......+.|+|++|+|||++|+...+.+.........-++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~--- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD--- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG---
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH---
Confidence 48999998888876653 234457899999999999999985554431111111112333210
Q ss_pred HHHHHHHHHHhccCccccchHHHHHHHHHHHcCCcEEEEEECCCCc-----------cchhhh--ccccCCCCcEEEEEc
Q 001999 220 SDIQEIILERLKVNAKELDNAQRADNISKELKDKRYVLFLDGVSSE-----------INFKEI--GIHDDHGRGKVVFAC 286 (984)
Q Consensus 220 ~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~-----------~~~~~~--~~~~~~~gs~ilvTT 286 (984)
.+...............+... +.-+|++|++... .....+ .+.....+..||+||
T Consensus 109 ---------~l~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~ 176 (309)
T 3syl_A 109 ---------DLVGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAG 176 (309)
T ss_dssp ---------GTCCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEE
T ss_pred ---------HhhhhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 111111111111222222221 3459999999733 111222 112344566777777
Q ss_pred CCccc-------cc---cCCceEEccCCChHHHHHHHHHHhCC
Q 001999 287 RSREF-------CW---QADDVIHVERLSPREAKKLFWEVVGV 319 (984)
Q Consensus 287 R~~~v-------~~---~~~~~~~l~~L~~~~~~~Lf~~~~~~ 319 (984)
..... .. .....+.+.+++.++-..++...+..
T Consensus 177 ~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~ 219 (309)
T 3syl_A 177 YADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDD 219 (309)
T ss_dssp CHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHH
Confidence 54321 11 33478999999999999999887643
No 195
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.73 E-value=0.00078 Score=76.29 Aligned_cols=177 Identities=14% Similarity=0.129 Sum_probs=100.6
Q ss_pred CCCCCchHHHHHHHHHHhcc------------CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHH
Q 001999 153 ASKFPSHKEYVETLEKHLSS------------GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNIS 220 (984)
Q Consensus 153 ~~~~vgr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~ 220 (984)
..+++|.+..++.|.+.+.. ...+.|.++|++|+|||+||+........ . -++.++.. +
T Consensus 133 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~-~-----~~~~v~~~-~-- 203 (444)
T 2zan_A 133 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN-S-----TFFSISSS-D-- 203 (444)
T ss_dssp GGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCS-S-----EEEEECCC----
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCC-C-----CEEEEeHH-H--
Confidence 45689999999998887631 23478999999999999999997766520 2 23333322 1
Q ss_pred HHHHHHHHHhccCccccchHHHHHHHHHHHcCCcEEEEEECCCCcc---------c----hhhhccc-----cCCCCcEE
Q 001999 221 DIQEIILERLKVNAKELDNAQRADNISKELKDKRYVLFLDGVSSEI---------N----FKEIGIH-----DDHGRGKV 282 (984)
Q Consensus 221 ~i~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~---------~----~~~~~~~-----~~~~gs~i 282 (984)
+.... .+. ........+...-..++.+|++|++.... . ...+... ....+..|
T Consensus 204 -l~~~~---~g~-----~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~v 274 (444)
T 2zan_A 204 -LVSKW---LGE-----SEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILV 274 (444)
T ss_dssp -----------------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEE
T ss_pred -HHhhh---cch-----HHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEE
Confidence 11100 110 01111111222224678999999997531 0 0111111 12345566
Q ss_pred EEEcCCccccc-----cCCceEEccCCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCC-chHHHHHH
Q 001999 283 VFACRSREFCW-----QADDVIHVERLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGM-PYMLKLIG 349 (984)
Q Consensus 283 lvTTR~~~v~~-----~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~Gl-Plai~~~~ 349 (984)
|.||....... .....+.+...+.++-..+|+.++....... -......|++.+.|. +-.|..+.
T Consensus 275 I~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l--~~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 275 LGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSL--TEADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp EEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEEC--CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCC--CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 66775543322 4446788888888888999988875432111 134567888888884 43444443
No 196
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.71 E-value=0.00026 Score=76.92 Aligned_cols=170 Identities=15% Similarity=0.166 Sum_probs=95.5
Q ss_pred CCCC-ch--HHHHHHHHHHhccC--CccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 001999 154 SKFP-SH--KEYVETLEKHLSSG--GLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEIILE 228 (984)
Q Consensus 154 ~~~v-gr--~~~~~~l~~~L~~~--~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~ 228 (984)
++|+ |. ......+..++..+ ....+.|+|++|+||||||+...+.... ..+ ..++++. ..+...+..
T Consensus 11 ~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~-~~~-~~~~i~~------~~~~~~~~~ 82 (324)
T 1l8q_A 11 ENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKK-RGY-RVIYSSA------DDFAQAMVE 82 (324)
T ss_dssp SSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHH-TTC-CEEEEEH------HHHHHHHHH
T ss_pred ccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHH-CCC-EEEEEEH------HHHHHHHHH
Confidence 3454 43 33444555555443 3578999999999999999996655531 111 2445543 333444443
Q ss_pred HhccCccccchHHHHHHHHHHHcCCcEEEEEECCCCcc---chh-hh--ccc-cCCCCcEEEEEcCCccc-----cc---
Q 001999 229 RLKVNAKELDNAQRADNISKELKDKRYVLFLDGVSSEI---NFK-EI--GIH-DDHGRGKVVFACRSREF-----CW--- 293 (984)
Q Consensus 229 ~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~---~~~-~~--~~~-~~~~gs~ilvTTR~~~v-----~~--- 293 (984)
.+... ....+.+.+. +.-+|++||+.... .+. .+ .+. ....|..||+||....- ..
T Consensus 83 ~~~~~--------~~~~~~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~ 153 (324)
T 1l8q_A 83 HLKKG--------TINEFRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLV 153 (324)
T ss_dssp HHHHT--------CHHHHHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHH
T ss_pred HHHcC--------cHHHHHHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhh
Confidence 33211 0111222222 36799999997643 221 22 111 12345678888764321 11
Q ss_pred ---cCCceEEccCCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCCchH
Q 001999 294 ---QADDVIHVERLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGMPYM 344 (984)
Q Consensus 294 ---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~GlPla 344 (984)
.....+.+.+ +.++...++.+.+..... .--++..+.|++.+ |..-.
T Consensus 154 sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~--~l~~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 154 SRFEGGILVEIEL-DNKTRFKIIKEKLKEFNL--ELRKEVIDYLLENT-KNVRE 203 (324)
T ss_dssp HHHHTSEEEECCC-CHHHHHHHHHHHHHHTTC--CCCHHHHHHHHHHC-SSHHH
T ss_pred hcccCceEEEeCC-CHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHhC-CCHHH
Confidence 3336799999 999999999888753311 11145677888888 76543
No 197
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.65 E-value=0.00077 Score=72.19 Aligned_cols=169 Identities=14% Similarity=0.193 Sum_probs=98.8
Q ss_pred CCCCCchHHHHHHHHHHhcc-------------CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCH
Q 001999 153 ASKFPSHKEYVETLEKHLSS-------------GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNI 219 (984)
Q Consensus 153 ~~~~vgr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~ 219 (984)
..+++|.+..+++|.+++.. ...+.+.++|++|+|||++|+....... ..| +.++ .
T Consensus 14 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~--~~~-----i~v~----~ 82 (301)
T 3cf0_A 14 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANF-----ISIK----G 82 (301)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTT--CEE-----EEEC----H
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhC--CCE-----EEEE----h
Confidence 35689999988888777642 3456899999999999999999777664 322 2222 2
Q ss_pred HHHHHHHHHHhccCccccchHHHHHHHHHHHcCCcEEEEEECCCCccc----------------hhhh--ccc--cCCCC
Q 001999 220 SDIQEIILERLKVNAKELDNAQRADNISKELKDKRYVLFLDGVSSEIN----------------FKEI--GIH--DDHGR 279 (984)
Q Consensus 220 ~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~----------------~~~~--~~~--~~~~g 279 (984)
..+..... +. ........+.......+.+|++|++..... ...+ .+. ....+
T Consensus 83 ~~l~~~~~---g~-----~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~ 154 (301)
T 3cf0_A 83 PELLTMWF---GE-----SEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKN 154 (301)
T ss_dssp HHHHHHHH---TT-----CTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSS
T ss_pred HHHHhhhc---Cc-----hHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCC
Confidence 23322211 11 112222333333456789999999974210 1111 010 12345
Q ss_pred cEEEEEcCCccccc-------cCCceEEccCCChHHHHHHHHHHhCCCC-CCCcchHHHHHHHHHHcCCCchH
Q 001999 280 GKVVFACRSREFCW-------QADDVIHVERLSPREAKKLFWEVVGVNL-KKNPDIEQEADSIVEECGGMPYM 344 (984)
Q Consensus 280 s~ilvTTR~~~v~~-------~~~~~~~l~~L~~~~~~~Lf~~~~~~~~-~~~~~l~~~~~~I~~~c~GlPla 344 (984)
..||.||....... .....+.+...+.++-.++++..+.... ....++ ..+++.+.|.|-+
T Consensus 155 v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~----~~la~~~~g~sg~ 223 (301)
T 3cf0_A 155 VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDL----EFLAKMTNGFSGA 223 (301)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCH----HHHHHTCSSCCHH
T ss_pred EEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchH----HHHHHHcCCCCHH
Confidence 56777776543221 2345789999999999999988775431 112222 3455667776643
No 198
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.65 E-value=0.00077 Score=73.34 Aligned_cols=166 Identities=11% Similarity=0.059 Sum_probs=99.4
Q ss_pred hHHHHHHHHHHhccCCc-cEEEEEcCCCChHHHHHHHhhhhcccC--------------------CCCCeEEEEEeC---
Q 001999 159 HKEYVETLEKHLSSGGL-KKICICGPLGVGKTTIMENSHDSVGES--------------------GRFDIIFWVNVN--- 214 (984)
Q Consensus 159 r~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~~~~~~~~~--------------------~~F~~~~wv~vs--- 214 (984)
.++..+.+.+.+..++. ..+.++|+.|+||||+|+...+.+... .|++. .++...
T Consensus 7 ~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~-~~~~~~~~~ 85 (334)
T 1a5t_A 7 LRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDY-YTLAPEKGK 85 (334)
T ss_dssp GHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTE-EEECCCTTC
T ss_pred hHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCE-EEEeccccC
Confidence 45667777777776554 569999999999999999955544210 12332 233221
Q ss_pred CCCCHHHHHHHHHHHhccCccccchHHHHHHHHHHHcCCcEEEEEECCCCcc--chhhh--ccccCCCCcEEEEEcCCcc
Q 001999 215 TDGNISDIQEIILERLKVNAKELDNAQRADNISKELKDKRYVLFLDGVSSEI--NFKEI--GIHDDHGRGKVVFACRSRE 290 (984)
Q Consensus 215 ~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~--~~~~~--~~~~~~~gs~ilvTTR~~~ 290 (984)
....+..+ +++.+.+.... ..+++-++|+|++.... ....+ .+.....+..+|++|.+..
T Consensus 86 ~~~~i~~i-r~l~~~~~~~~---------------~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~ 149 (334)
T 1a5t_A 86 NTLGVDAV-REVTEKLNEHA---------------RLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPE 149 (334)
T ss_dssp SSBCHHHH-HHHHHHTTSCC---------------TTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGG
T ss_pred CCCCHHHH-HHHHHHHhhcc---------------ccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChH
Confidence 11122211 22222221110 12567899999997643 22222 1222334567676666543
Q ss_pred -ccc---cCCceEEccCCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCCchHHHHH
Q 001999 291 -FCW---QADDVIHVERLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGMPYMLKLI 348 (984)
Q Consensus 291 -v~~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~~ 348 (984)
+.. .....+++.+++.++..+.+.+... . -.+.+..+++.++|.|..+..+
T Consensus 150 ~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~~----~---~~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 150 RLLATLRSRCRLHYLAPPPEQYAVTWLSREVT----M---SQDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp GSCHHHHTTSEEEECCCCCHHHHHHHHHHHCC----C---CHHHHHHHHHHTTTCHHHHHHT
T ss_pred hCcHHHhhcceeeeCCCCCHHHHHHHHHHhcC----C---CHHHHHHHHHHcCCCHHHHHHH
Confidence 333 5667899999999999999988751 1 1345678999999999766443
No 199
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.62 E-value=5e-05 Score=83.37 Aligned_cols=135 Identities=13% Similarity=0.052 Sum_probs=74.9
Q ss_pred CCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCcc-CCcchh--cccccCeEecCCCc-------ccccCchh
Q 001999 517 PNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRC-LPPSIS--RLINLNALFLRSCS-------LLFQLPKE 586 (984)
Q Consensus 517 ~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~-lp~~i~--~l~~L~~L~L~~c~-------~l~~lp~~ 586 (984)
..+|+|+.|.+.++.-..++. + .+++|+.|+|..|.+.. ....++ .+++|++|+|+.+. .+..+...
T Consensus 169 ~~~P~L~~L~L~g~~~l~l~~--~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~ 245 (362)
T 2ra8_A 169 DAMPLLNNLKIKGTNNLSIGK--K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL 245 (362)
T ss_dssp HTCTTCCEEEEECCBTCBCCS--C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG
T ss_pred hcCCCCcEEEEeCCCCceecc--c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHH
Confidence 445778888887653223333 2 26778888887776652 122333 67788888775321 12222222
Q ss_pred h--hccCCCcEEEecCccccc-cchhhh---ccCCCCeeecccccccCccccCCCCCCcccchhhhhccccccceeeeec
Q 001999 587 I--RYLQKLEILDVRHTRIQC-LPSEIG---QLIKLKCLRVSWVENVGNHTHAGAWPGEMISSNIISKLCLLEELIIEVL 660 (984)
Q Consensus 587 i--~~L~~L~~L~l~~~~l~~-lp~~~~---~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~~L~~L~~L~l~~~ 660 (984)
+ +.+++|++|++++|.+.. .+..+. .+++|++|+++ .+..... ....++. .+..+++|+.|++..+
T Consensus 246 l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs-----~n~L~d~--G~~~L~~-~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDIS-----AGVLTDE--GARLLLD-HVDKIKHLKFINMKYN 317 (362)
T ss_dssp SCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECC-----SSCCBHH--HHHHHHT-THHHHTTCSEEECCSB
T ss_pred HhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECC-----CCCCChH--HHHHHHh-hcccCCcceEEECCCC
Confidence 2 246788888888887652 222222 46788888887 3321110 0001221 2467788888888765
Q ss_pred CC
Q 001999 661 DP 662 (984)
Q Consensus 661 ~~ 662 (984)
..
T Consensus 318 ~i 319 (362)
T 2ra8_A 318 YL 319 (362)
T ss_dssp BC
T ss_pred cC
Confidence 43
No 200
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.59 E-value=7.5e-05 Score=73.41 Aligned_cols=114 Identities=15% Similarity=0.177 Sum_probs=62.7
Q ss_pred hHHHHHHHHHHhcc---CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHHHHHhccCcc
Q 001999 159 HKEYVETLEKHLSS---GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEIILERLKVNAK 235 (984)
Q Consensus 159 r~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~ 235 (984)
....++.+.+++.+ .....+.|+|+.|+||||||+.....+.....+. ++++ +..++...+.........
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~-~~~~------~~~~~~~~~~~~~~~~~~ 91 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR-GYFF------DTKDLIFRLKHLMDEGKD 91 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC-CCEE------EHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe-EEEE------EHHHHHHHHHHHhcCchH
Confidence 44555555555544 3467899999999999999999555442002221 2333 344555555444322111
Q ss_pred ccchHHHHHHHHHHHcCCcEEEEEECCCC--ccchhhh----ccc-cCCCCcEEEEEcCC
Q 001999 236 ELDNAQRADNISKELKDKRYVLFLDGVSS--EINFKEI----GIH-DDHGRGKVVFACRS 288 (984)
Q Consensus 236 ~~~~~~~~~~l~~~L~~kr~LlVlDdv~~--~~~~~~~----~~~-~~~~gs~ilvTTR~ 288 (984)
.. +.+.+. +.-+|||||++. .+.|..- .+. ....|..||+||..
T Consensus 92 ----~~----~~~~~~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 92 ----TK----FLKTVL-NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp ----SH----HHHHHH-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred ----HH----HHHHhc-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 11 112222 456899999983 3344321 111 22356788888854
No 201
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.59 E-value=0.00035 Score=79.80 Aligned_cols=147 Identities=16% Similarity=0.141 Sum_probs=82.1
Q ss_pred CCCCCchHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHhhhhcccC---CCC-C-eEEEEEeCCCCCHHHHHHHHH
Q 001999 153 ASKFPSHKEYVETLEKHLSSGGLKKICICGPLGVGKTTIMENSHDSVGES---GRF-D-IIFWVNVNTDGNISDIQEIIL 227 (984)
Q Consensus 153 ~~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~---~~F-~-~~~wv~vs~~~~~~~i~~~i~ 227 (984)
...++||+.++..+++.|......-+.++|++|+|||++|+.....+... ... + ..+.+..+
T Consensus 179 ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~------------- 245 (468)
T 3pxg_A 179 LDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG------------- 245 (468)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------------
T ss_pred CCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC-------------
Confidence 35689999999999999977555667899999999999999966665310 011 1 12222222
Q ss_pred HHhccCccccchHHHHHHHHHHHcCCcEEEEEECCCCccchhhhccccC-CCCcEEEEEcCCcc------ccc---cCCc
Q 001999 228 ERLKVNAKELDNAQRADNISKELKDKRYVLFLDGVSSEINFKEIGIHDD-HGRGKVVFACRSRE------FCW---QADD 297 (984)
Q Consensus 228 ~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~~~~~-~~gs~ilvTTR~~~------v~~---~~~~ 297 (984)
.... ..........+...-..++.+|++| ...+......+.- ....++|.||.... +.. ....
T Consensus 246 ~~~~----g~~e~~~~~~~~~~~~~~~~iLfiD---~~~~a~~~L~~~L~~g~v~vI~at~~~e~~~~~~~~~al~~Rf~ 318 (468)
T 3pxg_A 246 TKYR----GEFEDRLKKVMDEIRQAGNIILFID---AAIDASNILKPSLARGELQCIGATTLDEYRKYIEKDAALERRFQ 318 (468)
T ss_dssp -----------CTTHHHHHHHHHTCCCCEEEEC---C--------CCCTTSSSCEEEEECCTTTTHHHHTTCSHHHHSEE
T ss_pred cccc----chHHHHHHHHHHHHHhcCCeEEEEe---CchhHHHHHHHhhcCCCEEEEecCCHHHHHHHhhcCHHHHHhCc
Confidence 0000 0000112222222333567899999 1122222223322 22345665555443 111 3345
Q ss_pred eEEccCCChHHHHHHHHHHhCC
Q 001999 298 VIHVERLSPREAKKLFWEVVGV 319 (984)
Q Consensus 298 ~~~l~~L~~~~~~~Lf~~~~~~ 319 (984)
.+.+.+.+.++...++...+..
T Consensus 319 ~i~v~~p~~e~~~~iL~~~~~~ 340 (468)
T 3pxg_A 319 PIQVDQPSVDESIQILQGLRDR 340 (468)
T ss_dssp EEECCCCCHHHHHHHHHHTTTT
T ss_pred cceeCCCCHHHHHHHHHHHHHH
Confidence 7999999999999999876543
No 202
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.54 E-value=0.0025 Score=69.69 Aligned_cols=165 Identities=13% Similarity=0.155 Sum_probs=98.8
Q ss_pred CCCCchHHHHHHHHHHhcc-------------CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHH
Q 001999 154 SKFPSHKEYVETLEKHLSS-------------GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNIS 220 (984)
Q Consensus 154 ~~~vgr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~ 220 (984)
+++.|.++.+++|.+.+.- ...+-|-++|++|+|||.||+++..... ..| +.|..+.-.+
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~--~~f---~~v~~s~l~s-- 220 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTD--CKF---IRVSGAELVQ-- 220 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHT--CEE---EEEEGGGGSC--
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhC--CCc---eEEEhHHhhc--
Confidence 5578999988888776531 3457789999999999999999877776 333 3344332111
Q ss_pred HHHHHHHHHhccCccccchHHHHHHHHHH-HcCCcEEEEEECCCCcc----------c------hhhhc--cc--cCCCC
Q 001999 221 DIQEIILERLKVNAKELDNAQRADNISKE-LKDKRYVLFLDGVSSEI----------N------FKEIG--IH--DDHGR 279 (984)
Q Consensus 221 ~i~~~i~~~l~~~~~~~~~~~~~~~l~~~-L~~kr~LlVlDdv~~~~----------~------~~~~~--~~--~~~~g 279 (984)
...+.+ +.....+... -+..+++|++|++.... + ...+. +- ....+
T Consensus 221 ------------k~vGes-e~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ 287 (405)
T 4b4t_J 221 ------------KYIGEG-SRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKN 287 (405)
T ss_dssp ------------SSTTHH-HHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCC
T ss_pred ------------cccchH-HHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCC
Confidence 111111 2222233222 24678999999986421 1 01110 00 23344
Q ss_pred cEEEEEcCCccccc-------cCCceEEccCCChHHHHHHHHHHhCCC-CCCCcchHHHHHHHHHHcCCCc
Q 001999 280 GKVVFACRSREFCW-------QADDVIHVERLSPREAKKLFWEVVGVN-LKKNPDIEQEADSIVEECGGMP 342 (984)
Q Consensus 280 s~ilvTTR~~~v~~-------~~~~~~~l~~L~~~~~~~Lf~~~~~~~-~~~~~~l~~~~~~I~~~c~GlP 342 (984)
-.||.||-...... .....+.++.-+.++-.++|+.+...- .....++ .+|++.+.|.-
T Consensus 288 V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl----~~lA~~t~G~S 354 (405)
T 4b4t_J 288 IKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINL----RKVAEKMNGCS 354 (405)
T ss_dssp EEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCH----HHHHHHCCSCC
T ss_pred eEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCH----HHHHHHCCCCC
Confidence 55666776554433 456789998888888899998876543 2222233 55777887754
No 203
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.51 E-value=0.00061 Score=75.80 Aligned_cols=81 Identities=7% Similarity=0.032 Sum_probs=45.8
Q ss_pred CCCCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCCc-chhcccccCeEecCCCcccccCchhhhccCCC
Q 001999 515 DMPNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLPP-SISRLINLNALFLRSCSLLFQLPKEIRYLQKL 593 (984)
Q Consensus 515 ~~~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L 593 (984)
.+....+|+++.+. ..++.++...|.++.+|+.++|..+ ++.++. .+.++ +|+.+.+.. .++.++...-...+|
T Consensus 41 ~~~~~~~i~~v~ip-~~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~--~l~~I~~~aF~~~~L 115 (379)
T 4h09_A 41 WYKDRDRISEVRVN-SGITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGME--RVKKFGDYVFQGTDL 115 (379)
T ss_dssp TGGGGGGCSEEEEC-TTEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECT--TCCEECTTTTTTCCC
T ss_pred ccccccCCEEEEeC-CCccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCc--eeeEeccceeccCCc
Confidence 33445666766665 3466777777888888888888543 555533 34454 455555543 244444332222466
Q ss_pred cEEEecC
Q 001999 594 EILDVRH 600 (984)
Q Consensus 594 ~~L~l~~ 600 (984)
+.+++..
T Consensus 116 ~~i~lp~ 122 (379)
T 4h09_A 116 DDFEFPG 122 (379)
T ss_dssp SEEECCT
T ss_pred ccccCCC
Confidence 6666654
No 204
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.46 E-value=0.0031 Score=69.86 Aligned_cols=165 Identities=18% Similarity=0.188 Sum_probs=97.2
Q ss_pred CCCCchHHHHHHHHHHhcc-------------CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHH
Q 001999 154 SKFPSHKEYVETLEKHLSS-------------GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNIS 220 (984)
Q Consensus 154 ~~~vgr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~ 220 (984)
.++.|.++.+++|.+.+.- ...+-|-++|++|+|||+||++...... ..| +.|..+.-.
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~--~~f---i~vs~s~L~--- 280 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTD--ATF---IRVIGSELV--- 280 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHT--CEE---EEEEGGGGC---
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccC--CCe---EEEEhHHhh---
Confidence 4578999988888776531 4568899999999999999999887776 333 334333211
Q ss_pred HHHHHHHHHhccCccccchHHHHHHHHH-HHcCCcEEEEEECCCCcc----------c------hhhh--cc--ccCCCC
Q 001999 221 DIQEIILERLKVNAKELDNAQRADNISK-ELKDKRYVLFLDGVSSEI----------N------FKEI--GI--HDDHGR 279 (984)
Q Consensus 221 ~i~~~i~~~l~~~~~~~~~~~~~~~l~~-~L~~kr~LlVlDdv~~~~----------~------~~~~--~~--~~~~~g 279 (984)
......+ +.....+.. .-...+++|++|++.... . ...+ .+ .....+
T Consensus 281 -----------sk~vGes-ek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ 348 (467)
T 4b4t_H 281 -----------QKYVGEG-ARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGN 348 (467)
T ss_dssp -----------CCSSSHH-HHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTT
T ss_pred -----------cccCCHH-HHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCc
Confidence 1111111 222222322 234678999999996421 0 0001 00 022334
Q ss_pred cEEEEEcCCccccc-------cCCceEEccCCChHHHHHHHHHHhCCC-CCCCcchHHHHHHHHHHcCCCc
Q 001999 280 GKVVFACRSREFCW-------QADDVIHVERLSPREAKKLFWEVVGVN-LKKNPDIEQEADSIVEECGGMP 342 (984)
Q Consensus 280 s~ilvTTR~~~v~~-------~~~~~~~l~~L~~~~~~~Lf~~~~~~~-~~~~~~l~~~~~~I~~~c~GlP 342 (984)
..||.||-...... .....+.+..-+.++-.++|+.++..- ....-++ ..|++.+.|.-
T Consensus 349 ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl----~~LA~~T~GfS 415 (467)
T 4b4t_H 349 IKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRW----ELISRLCPNST 415 (467)
T ss_dssp EEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCH----HHHHHHCCSCC
T ss_pred EEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCH----HHHHHHCCCCC
Confidence 45566765544332 355678888888888889998776543 1122233 55777887753
No 205
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.43 E-value=0.0001 Score=72.73 Aligned_cols=35 Identities=23% Similarity=0.254 Sum_probs=17.0
Q ss_pred hhccCCCcEEEecCccccc-----cchhhhccCCCCeeec
Q 001999 587 IRYLQKLEILDVRHTRIQC-----LPSEIGQLIKLKCLRV 621 (984)
Q Consensus 587 i~~L~~L~~L~l~~~~l~~-----lp~~~~~L~~L~~L~l 621 (984)
+...++|++|++++|.+.. +...+...++|++|++
T Consensus 89 L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L 128 (185)
T 1io0_A 89 LKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRI 128 (185)
T ss_dssp HHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEEC
T ss_pred HHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEe
Confidence 3334455555555555442 3334444455555555
No 206
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.42 E-value=0.00032 Score=86.61 Aligned_cols=152 Identities=14% Similarity=0.149 Sum_probs=82.9
Q ss_pred CCCCCchHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHhhhhcccC---CCC-C-eEEEEEeCCCCCHHHHHHHHH
Q 001999 153 ASKFPSHKEYVETLEKHLSSGGLKKICICGPLGVGKTTIMENSHDSVGES---GRF-D-IIFWVNVNTDGNISDIQEIIL 227 (984)
Q Consensus 153 ~~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~---~~F-~-~~~wv~vs~~~~~~~i~~~i~ 227 (984)
...++||++++..+++.|.....+-+.++|.+|+||||+|+.....+... ... + ..+++..+.-..
T Consensus 169 ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~--------- 239 (854)
T 1qvr_A 169 LDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA--------- 239 (854)
T ss_dssp SCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC--------------
T ss_pred CcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc---------
Confidence 35689999999999999987666667899999999999999966555210 111 1 233443322100
Q ss_pred HHhccCccccchHHHHHHHHHHHc--CCcEEEEEECCCCcc-------chhh--hccc-cCCCCcEEEEEcCCccc----
Q 001999 228 ERLKVNAKELDNAQRADNISKELK--DKRYVLFLDGVSSEI-------NFKE--IGIH-DDHGRGKVVFACRSREF---- 291 (984)
Q Consensus 228 ~~l~~~~~~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~~-------~~~~--~~~~-~~~~gs~ilvTTR~~~v---- 291 (984)
+..... ........+.+.+. +++.+|++|++.... .++. ...+ -...+-.+|.||.....
T Consensus 240 ---g~~~~g-~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~~i~~I~at~~~~~~~~~ 315 (854)
T 1qvr_A 240 ---GAKYRG-EFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELRLIGATTLDEYREIE 315 (854)
T ss_dssp ----------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHTTCCCEEEEECHHHHHHHT
T ss_pred ---cCccch-HHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhCCCeEEEEecCchHHhhhc
Confidence 000000 11222222333332 368999999997532 1111 1111 11223455555543321
Q ss_pred -cc---cCCceEEccCCChHHHHHHHHHHh
Q 001999 292 -CW---QADDVIHVERLSPREAKKLFWEVV 317 (984)
Q Consensus 292 -~~---~~~~~~~l~~L~~~~~~~Lf~~~~ 317 (984)
.. .....+.+++.+.++..+++....
T Consensus 316 ~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~ 345 (854)
T 1qvr_A 316 KDPALERRFQPVYVDEPTVEETISILRGLK 345 (854)
T ss_dssp TCTTTCSCCCCEEECCCCHHHHHHHHHHHH
T ss_pred cCHHHHhCCceEEeCCCCHHHHHHHHHhhh
Confidence 11 334469999999999999997543
No 207
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.41 E-value=0.0002 Score=71.76 Aligned_cols=118 Identities=18% Similarity=0.213 Sum_probs=64.1
Q ss_pred CCCCch----HHHHHHHHHHhccC----CccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHH
Q 001999 154 SKFPSH----KEYVETLEKHLSSG----GLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEI 225 (984)
Q Consensus 154 ~~~vgr----~~~~~~l~~~L~~~----~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~ 225 (984)
.++++. ...++.+.+++... ....+.|+|++|+||||||+....... .....++|++++ .+...
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~--~~~~~~~~~~~~------~~~~~ 96 (202)
T 2w58_A 25 SDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELA--KRNVSSLIVYVP------ELFRE 96 (202)
T ss_dssp TSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHH--TTTCCEEEEEHH------HHHHH
T ss_pred hhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEEEhH------HHHHH
Confidence 345543 33455556666542 127899999999999999999666654 333456666543 44444
Q ss_pred HHHHhccCccccchHHHHHHHHHHHcCCcEEEEEECCCCc--cchhhh--c---cc-cCCCCcEEEEEcCC
Q 001999 226 ILERLKVNAKELDNAQRADNISKELKDKRYVLFLDGVSSE--INFKEI--G---IH-DDHGRGKVVFACRS 288 (984)
Q Consensus 226 i~~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~~--~---~~-~~~~gs~ilvTTR~ 288 (984)
+....... ........ +... -+|||||++.. .+|..- . +. ....+.++|+||..
T Consensus 97 ~~~~~~~~----~~~~~~~~----~~~~-~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 97 LKHSLQDQ----TMNEKLDY----IKKV-PVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp HHHC---C----CCHHHHHH----HHHS-SEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred HHHHhccc----hHHHHHHH----hcCC-CEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 44332211 11222222 2222 39999999653 344321 1 11 11345678888864
No 208
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.41 E-value=0.00058 Score=76.43 Aligned_cols=316 Identities=10% Similarity=0.146 Sum_probs=169.0
Q ss_pred cCeEeeeccCCCCCCC--CCCCcCceeEEEecCc---ccCCCcchHhhcCCCccEEeccCCCCccCC-cchhcccccCeE
Q 001999 499 DTKKLSLFGFPSSTLP--DMPNCCEILTLIVEGR---RLEKLPMSFFEYMCHLQLLDLHDTSIRCLP-PSISRLINLNAL 572 (984)
Q Consensus 499 ~~r~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~---~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~~L~~L 572 (984)
.++.+.+.. .+..+. .+.+|.+|+.+.+..+ .++.++...|.++..|+.+.+..+ ++.++ ..+..+.+|+.+
T Consensus 65 ~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i 142 (394)
T 4gt6_A 65 VLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTV 142 (394)
T ss_dssp CCCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEE
T ss_pred cCEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccc
Confidence 366677753 243332 4688999999999865 377788888999999998887654 55554 357789999999
Q ss_pred ecCCCcccccCch-hhhccCCCcEEEecCccccccchhhhccCCCCeeecccccccCccccCCCCCCcccchhhhhcccc
Q 001999 573 FLRSCSLLFQLPK-EIRYLQKLEILDVRHTRIQCLPSEIGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSNIISKLCL 651 (984)
Q Consensus 573 ~L~~c~~l~~lp~-~i~~L~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~~L~~ 651 (984)
.+.. .+..++. .+..+.+|+.+.+..+ +..+....-...+|+.+.+. ... . .+....+..+.+
T Consensus 143 ~lp~--~~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip-----~~~--~------~i~~~af~~c~~ 206 (394)
T 4gt6_A 143 TIPE--GVTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIP-----AKV--T------RIGTNAFSECFA 206 (394)
T ss_dssp ECCT--TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEEC-----TTC--C------EECTTTTTTCTT
T ss_pred cccc--eeeeecccceecccccccccccce-eeEeccccccccceeEEEEC-----Ccc--c------ccccchhhhccc
Confidence 9975 2444443 4778899999998754 55554443344678877775 211 1 233334566666
Q ss_pred ccceeeeecCCchhHHhhhhhhhHHHhhccCCCceEEEecCCcchhhhhhhcccccCCCCCCCCCCcceeEEEecccCcc
Q 001999 652 LEELIIEVLDPSDRRWKQNVESIAGEIAALEQLTTLHFYFPTIKCFKTFINRRKSVNGNKSRHGDNFKSFNIVVGYPQST 731 (984)
Q Consensus 652 L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~ 731 (984)
|............. .... ...........+.+....... .+. .+...
T Consensus 207 l~~~~~~~~~~~~~-----~~~~---~~~~~~~~~~~~~~~~~~~~~---------------------~~~----ip~~v 253 (394)
T 4gt6_A 207 LSTITSDSESYPAI-----DNVL---YEKSANGDYALIRYPSQREDP---------------------AFK----IPNGV 253 (394)
T ss_dssp CCEEEECCSSSCBS-----SSCE---EEECTTSCEEEEECCTTCCCS---------------------EEE----CCTTE
T ss_pred cceecccccccccc-----ccee---ecccccccccccccccccccc---------------------eEE----cCCcc
Confidence 65554332110000 0000 000000000000000000000 000 00000
Q ss_pred ceeccccccccccccceEEccCCCCchhHHHHHhhhccceeeccccccccccccccccccccCeeEEcccCCceEEecCC
Q 001999 732 SLLAGFDVSEWSAEKHLRFSAGVEEIPGEFLTILKQAYSFELIGSQYAVNLSNFGVDNLVRLQACVIEDCNEMTSIIDGN 811 (984)
Q Consensus 732 ~~l~~~~~p~~~~L~~L~l~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~l~~i~~~~ 811 (984)
..+....+..+..|+.+.+. + ....+....+.++++|+.+.+. ..++.++...
T Consensus 254 ~~i~~~aF~~c~~L~~i~lp-----------------------~--~~~~I~~~aF~~c~~L~~i~l~--~~i~~I~~~a 306 (394)
T 4gt6_A 254 ARIETHAFDSCAYLASVKMP-----------------------D--SVVSIGTGAFMNCPALQDIEFS--SRITELPESV 306 (394)
T ss_dssp EEECTTTTTTCSSCCEEECC-----------------------T--TCCEECTTTTTTCTTCCEEECC--TTCCEECTTT
T ss_pred eEcccceeeecccccEEecc-----------------------c--ccceecCcccccccccccccCC--CcccccCcee
Confidence 00011111222222222222 1 1122333355678888888885 4677777654
Q ss_pred CCCcccCCCcceeecccccccccccccccccCcccccceeeecccccccccCcHHHHhhcccccEEeecccchhHHHhhc
Q 001999 812 HRGVVPFQGLNNLHIKNLPKLMHIWVGPIASGSLNSLRTLRVKICHSIKTLFSKEMVAQLNELQDLQVEDCQMIEEIVEA 891 (984)
Q Consensus 812 ~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~ 891 (984)
+. .+.+|+++.|.. +++.|... ....+.+|+.+.|.. +++.+ +...+.++++|+.+++.++... +
T Consensus 307 F~---~c~~L~~i~lp~--~v~~I~~~--aF~~C~~L~~i~ip~--sv~~I-~~~aF~~C~~L~~i~~~~~~~~--~--- 371 (394)
T 4gt6_A 307 FA---GCISLKSIDIPE--GITQILDD--AFAGCEQLERIAIPS--SVTKI-PESAFSNCTALNNIEYSGSRSQ--W--- 371 (394)
T ss_dssp TT---TCTTCCEEECCT--TCCEECTT--TTTTCTTCCEEEECT--TCCBC-CGGGGTTCTTCCEEEESSCHHH--H---
T ss_pred ec---CCCCcCEEEeCC--cccEehHh--HhhCCCCCCEEEECc--ccCEE-hHhHhhCCCCCCEEEECCceee--h---
Confidence 33 357888888854 35554332 234788999999965 47777 5577889999999999876431 1
Q ss_pred CcccccCCCCcccEeeccC
Q 001999 892 GTVLAIGEFPKLKTLELID 910 (984)
Q Consensus 892 ~~~~~~~~~~~L~~L~L~~ 910 (984)
..+..+.+|+.+.+..
T Consensus 372 ---~~~~~~~~L~~i~i~~ 387 (394)
T 4gt6_A 372 ---NAISTDSGLQNLPVAP 387 (394)
T ss_dssp ---HTCBCCCCC-------
T ss_pred ---hhhhccCCCCEEEeCC
Confidence 1345667788777653
No 209
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.40 E-value=0.00021 Score=74.20 Aligned_cols=80 Identities=23% Similarity=0.196 Sum_probs=55.7
Q ss_pred hcCCCccEEeccCCCCccC---CcchhcccccCeEecCCCcccccCchhhhccC--CCcEEEecCcccc-ccc-------
Q 001999 541 EYMCHLQLLDLHDTSIRCL---PPSISRLINLNALFLRSCSLLFQLPKEIRYLQ--KLEILDVRHTRIQ-CLP------- 607 (984)
Q Consensus 541 ~~l~~Lr~L~L~~~~i~~l---p~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~--~L~~L~l~~~~l~-~lp------- 607 (984)
.++++|+.|+|++|.++.+ |..++.+++|++|+|++|. +..+ ..+..+. +|++|++++|.+. .+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 5677888888888877654 3556678888888888754 5544 3355555 8888888888776 344
Q ss_pred hhhhccCCCCeeecc
Q 001999 608 SEIGQLIKLKCLRVS 622 (984)
Q Consensus 608 ~~~~~L~~L~~L~l~ 622 (984)
..+..+++|+.|+-.
T Consensus 245 ~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 245 AIRERFPKLLRLDGH 259 (267)
T ss_dssp HHHHHCTTCCEESSC
T ss_pred HHHHHCcccCeECCc
Confidence 236788899988754
No 210
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.37 E-value=0.0027 Score=70.58 Aligned_cols=165 Identities=15% Similarity=0.213 Sum_probs=96.4
Q ss_pred CCCCchHHHHHHHHHHhcc-------------CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHH
Q 001999 154 SKFPSHKEYVETLEKHLSS-------------GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNIS 220 (984)
Q Consensus 154 ~~~vgr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~ 220 (984)
.++.|.++.+++|.+.+.- ...+-|-++|++|+|||+||+++..... ..| +.|..+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~--~~~---~~v~~s~l~s-- 253 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIG--ANF---IFSPASGIVD-- 253 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHT--CEE---EEEEGGGTCC--
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhC--CCE---EEEehhhhcc--
Confidence 4568899888887766531 3467899999999999999999877765 332 3344333211
Q ss_pred HHHHHHHHHhccCccccchHHHHHHHHH-HHcCCcEEEEEECCCCcc----------c------hhhhc--c--ccCCCC
Q 001999 221 DIQEIILERLKVNAKELDNAQRADNISK-ELKDKRYVLFLDGVSSEI----------N------FKEIG--I--HDDHGR 279 (984)
Q Consensus 221 ~i~~~i~~~l~~~~~~~~~~~~~~~l~~-~L~~kr~LlVlDdv~~~~----------~------~~~~~--~--~~~~~g 279 (984)
..... .......+.. .-...+++|++|++.... + ...+. + .....+
T Consensus 254 ------------k~~Ge-se~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ 320 (437)
T 4b4t_L 254 ------------KYIGE-SARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQ 320 (437)
T ss_dssp ------------SSSSH-HHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTS
T ss_pred ------------ccchH-HHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCC
Confidence 01111 1222222322 224678999999996420 0 11110 0 123345
Q ss_pred cEEEEEcCCccccc-------cCCceEEccCCChHHHHHHHHHHhCCC-CCCCcchHHHHHHHHHHcCCCc
Q 001999 280 GKVVFACRSREFCW-------QADDVIHVERLSPREAKKLFWEVVGVN-LKKNPDIEQEADSIVEECGGMP 342 (984)
Q Consensus 280 s~ilvTTR~~~v~~-------~~~~~~~l~~L~~~~~~~Lf~~~~~~~-~~~~~~l~~~~~~I~~~c~GlP 342 (984)
..||.||-...... .....+.++.-+.++-.++|+.+...- .....++ ..|++.+.|.-
T Consensus 321 vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl----~~lA~~t~G~s 387 (437)
T 4b4t_L 321 TKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDF----EAAVKMSDGFN 387 (437)
T ss_dssp SEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCH----HHHHHTCCSCC
T ss_pred eEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCH----HHHHHhCCCCC
Confidence 56777776554433 134567787778888888888776543 1122233 45677777754
No 211
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.34 E-value=0.0084 Score=65.04 Aligned_cols=169 Identities=17% Similarity=0.164 Sum_probs=95.4
Q ss_pred CCCCCCchHHHHHHHHHHhcc-----CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHH
Q 001999 152 HASKFPSHKEYVETLEKHLSS-----GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEII 226 (984)
Q Consensus 152 ~~~~~vgr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i 226 (984)
..++++|.+..++.+...+.. .....+.++|+.|+||||||+.....+. ..|. .+.-+-..+...+
T Consensus 23 ~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~--~~~~---~~sg~~~~~~~~l---- 93 (334)
T 1in4_A 23 SLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQ--TNIH---VTSGPVLVKQGDM---- 93 (334)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHT--CCEE---EEETTTCCSHHHH----
T ss_pred cHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhC--CCEE---EEechHhcCHHHH----
Confidence 446688988887777666543 2347799999999999999999766664 2221 1111111111111
Q ss_pred HHHhccCccccchHHHHHHHHHHHcCCcEEEEEECCCCcc--chhhhc--cccC--------C----------CCcEE-E
Q 001999 227 LERLKVNAKELDNAQRADNISKELKDKRYVLFLDGVSSEI--NFKEIG--IHDD--------H----------GRGKV-V 283 (984)
Q Consensus 227 ~~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~--~~~~~~--~~~~--------~----------~gs~i-l 283 (984)
. .+...+ .++.++++|++.... ..+.+. +... . ....+ -
T Consensus 94 ----------------~-~~~~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~ 155 (334)
T 1in4_A 94 ----------------A-AILTSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG 155 (334)
T ss_dssp ----------------H-HHHHHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEE
T ss_pred ----------------H-HHHHHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE
Confidence 1 111111 234577788875431 111110 0000 0 01122 2
Q ss_pred EEcCCccccc----cCCceEEccCCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCCchHHHHHH
Q 001999 284 FACRSREFCW----QADDVIHVERLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGMPYMLKLIG 349 (984)
Q Consensus 284 vTTR~~~v~~----~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~~~ 349 (984)
.|++...+.. .......+++.+.++-.+++++.+.... ..--.+.+..|++.++|.|-.+..+.
T Consensus 156 at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~--~~~~~~~~~~ia~~~~G~~R~a~~ll 223 (334)
T 1in4_A 156 ATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMD--VEIEDAAAEMIAKRSRGTPRIAIRLT 223 (334)
T ss_dssp EESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT--CCBCHHHHHHHHHTSTTCHHHHHHHH
T ss_pred ecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcC--CCcCHHHHHHHHHhcCCChHHHHHHH
Confidence 3555444433 3334689999999999999998764321 12225678999999999997554443
No 212
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.33 E-value=0.0016 Score=72.29 Aligned_cols=163 Identities=18% Similarity=0.247 Sum_probs=91.3
Q ss_pred CCCCchHHHHHHHHHHhcc-------------CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHH
Q 001999 154 SKFPSHKEYVETLEKHLSS-------------GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNIS 220 (984)
Q Consensus 154 ~~~vgr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~ 220 (984)
.++.|.++.+++|.+.+.- ...+-|-++|++|+|||++|++...... ..| +.|..+.-.+
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~--~~~---~~v~~~~l~~-- 244 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTK--AAF---IRVNGSEFVH-- 244 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHT--CEE---EEEEGGGTCC--
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhC--CCe---EEEecchhhc--
Confidence 5678999988888776532 3467799999999999999999877765 333 3344333211
Q ss_pred HHHHHHHHHhccCccccchHHHHHHHH-HHHcCCcEEEEEECCCCc-----------c-c----hhhh-----ccccCCC
Q 001999 221 DIQEIILERLKVNAKELDNAQRADNIS-KELKDKRYVLFLDGVSSE-----------I-N----FKEI-----GIHDDHG 278 (984)
Q Consensus 221 ~i~~~i~~~l~~~~~~~~~~~~~~~l~-~~L~~kr~LlVlDdv~~~-----------~-~----~~~~-----~~~~~~~ 278 (984)
...+.. +.....+. ..-...+++|++|++... . . ...+ ++ ....
T Consensus 245 ------------~~~Ge~-e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~-~~~~ 310 (428)
T 4b4t_K 245 ------------KYLGEG-PRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGF-DQST 310 (428)
T ss_dssp ------------SSCSHH-HHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHS-CSSC
T ss_pred ------------cccchh-HHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCC-CCCC
Confidence 000111 22222222 222467899999998521 0 0 1111 11 2334
Q ss_pred CcEEEEEcCCccccc-------cCCceEEccCCChHHH-HHHHHHHhCCC-CCCCcchHHHHHHHHHHcCCC
Q 001999 279 RGKVVFACRSREFCW-------QADDVIHVERLSPREA-KKLFWEVVGVN-LKKNPDIEQEADSIVEECGGM 341 (984)
Q Consensus 279 gs~ilvTTR~~~v~~-------~~~~~~~l~~L~~~~~-~~Lf~~~~~~~-~~~~~~l~~~~~~I~~~c~Gl 341 (984)
+-.||.||-...... .....+.+..+++.++ ..+|+.+...- .....++ ..|++.+.|.
T Consensus 311 ~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl----~~lA~~t~G~ 378 (428)
T 4b4t_K 311 NVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADL----DSLIIRNDSL 378 (428)
T ss_dssp SEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCH----HHHHHHTTTC
T ss_pred CEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCH----HHHHHHCCCC
Confidence 556677776554433 2234677776765544 55666555332 1122233 4567777775
No 213
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.32 E-value=0.0034 Score=65.37 Aligned_cols=171 Identities=15% Similarity=0.119 Sum_probs=91.6
Q ss_pred CCCCCchHHHHHHHHHHh---cc---------CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHH
Q 001999 153 ASKFPSHKEYVETLEKHL---SS---------GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNIS 220 (984)
Q Consensus 153 ~~~~vgr~~~~~~l~~~L---~~---------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~ 220 (984)
-.+++|.+..++++.+.+ .. ...+-+.|+|+.|+||||+|+....... ..| +.+..+.-.+
T Consensus 11 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~--~~~---~~i~~~~~~~-- 83 (257)
T 1lv7_A 11 FADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK--VPF---FTISGSDFVE-- 83 (257)
T ss_dssp GGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHT--CCE---EEECSCSSTT--
T ss_pred HHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC--CCE---EEEeHHHHHH--
Confidence 356899988877765543 22 1234688999999999999999766654 333 3333222110
Q ss_pred HHHHHHHHHhccCccccchHHHHHHHHHHHcCCcEEEEEECCCCcc-----------c-----hhhhc--cc--cCCCCc
Q 001999 221 DIQEIILERLKVNAKELDNAQRADNISKELKDKRYVLFLDGVSSEI-----------N-----FKEIG--IH--DDHGRG 280 (984)
Q Consensus 221 ~i~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~-----------~-----~~~~~--~~--~~~~gs 280 (984)
.............+.........++++|++.... + ...+. +. ....+.
T Consensus 84 ------------~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 151 (257)
T 1lv7_A 84 ------------MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGI 151 (257)
T ss_dssp ------------SCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCE
T ss_pred ------------HhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCE
Confidence 0001111222233333334567899999983210 0 01110 00 123445
Q ss_pred EEEEEcCCccccc-------cCCceEEccCCChHHHHHHHHHHhCCCC-CCCcchHHHHHHHHHHcCC-CchHHH
Q 001999 281 KVVFACRSREFCW-------QADDVIHVERLSPREAKKLFWEVVGVNL-KKNPDIEQEADSIVEECGG-MPYMLK 346 (984)
Q Consensus 281 ~ilvTTR~~~v~~-------~~~~~~~l~~L~~~~~~~Lf~~~~~~~~-~~~~~l~~~~~~I~~~c~G-lPlai~ 346 (984)
.||.||....... .....+.+...+.++-.++++..+.... ..... ...+++.+.| .+--+.
T Consensus 152 ~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~----~~~la~~~~G~~~~dl~ 222 (257)
T 1lv7_A 152 IVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDID----AAIIARGTPGFSGADLA 222 (257)
T ss_dssp EEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCCHHHHH
T ss_pred EEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCcccc----HHHHHHHcCCCCHHHHH
Confidence 6666766543221 2245778888888888888877764331 11111 2346667777 554443
No 214
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.30 E-value=0.0022 Score=71.17 Aligned_cols=164 Identities=13% Similarity=0.113 Sum_probs=94.2
Q ss_pred CCCCchHHHHHHHHHHhcc-------------CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHH
Q 001999 154 SKFPSHKEYVETLEKHLSS-------------GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNIS 220 (984)
Q Consensus 154 ~~~vgr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~ 220 (984)
.++.|.++.+++|.+.+.- ...+-|-++|++|+|||.||++...... ..| +.+..+.-.
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~--~~f---~~v~~s~l~--- 252 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTN--ATF---LKLAAPQLV--- 252 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHT--CEE---EEEEGGGGC---
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhC--CCE---EEEehhhhh---
Confidence 5578999999888776531 3467899999999999999999877766 332 334333211
Q ss_pred HHHHHHHHHhccCccccchHHHHHHHHHH-HcCCcEEEEEECCCCc-------c-----chh----hh--ccc--cCCCC
Q 001999 221 DIQEIILERLKVNAKELDNAQRADNISKE-LKDKRYVLFLDGVSSE-------I-----NFK----EI--GIH--DDHGR 279 (984)
Q Consensus 221 ~i~~~i~~~l~~~~~~~~~~~~~~~l~~~-L~~kr~LlVlDdv~~~-------~-----~~~----~~--~~~--~~~~g 279 (984)
....+. .+.....+... -...+++|++|++... . ... .+ .+- ....+
T Consensus 253 -----------~~~vGe-se~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ 320 (434)
T 4b4t_M 253 -----------QMYIGE-GAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDR 320 (434)
T ss_dssp -----------SSCSSH-HHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCS
T ss_pred -----------hcccch-HHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCC
Confidence 011111 12222333322 2346899999998531 0 011 11 010 22334
Q ss_pred cEEEEEcCCccccc-------cCCceEEccCCChHHHHHHHHHHhCCC-CCCCcchHHHHHHHHHHcCCC
Q 001999 280 GKVVFACRSREFCW-------QADDVIHVERLSPREAKKLFWEVVGVN-LKKNPDIEQEADSIVEECGGM 341 (984)
Q Consensus 280 s~ilvTTR~~~v~~-------~~~~~~~l~~L~~~~~~~Lf~~~~~~~-~~~~~~l~~~~~~I~~~c~Gl 341 (984)
-.||.||....... .....+.++.-+.++-.++|+.+...- ....-++ .+|++.+.|.
T Consensus 321 ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl----~~lA~~t~G~ 386 (434)
T 4b4t_M 321 VKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINW----QELARSTDEF 386 (434)
T ss_dssp SEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCH----HHHHHHCSSC
T ss_pred EEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCH----HHHHHhCCCC
Confidence 45666776654433 234578888888888888887665432 1122233 5567777774
No 215
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.26 E-value=0.0024 Score=77.92 Aligned_cols=148 Identities=16% Similarity=0.113 Sum_probs=84.0
Q ss_pred CCCCCchHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHhhhhcccC---CCC-CeEEEEEeCCCCCHHHHHHHHHH
Q 001999 153 ASKFPSHKEYVETLEKHLSSGGLKKICICGPLGVGKTTIMENSHDSVGES---GRF-DIIFWVNVNTDGNISDIQEIILE 228 (984)
Q Consensus 153 ~~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~---~~F-~~~~wv~vs~~~~~~~i~~~i~~ 228 (984)
...++||+++++.+++.|......-+.++|++|+|||++|+...+.+... ... +.. ++.++-
T Consensus 179 ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~-~~~~~~------------- 244 (758)
T 3pxi_A 179 LDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKR-VMTLDM------------- 244 (758)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCC-EECC---------------
T ss_pred CCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCe-EEEecc-------------
Confidence 35689999999999999987655667899999999999999966665210 011 111 111111
Q ss_pred HhccCccccchHHHHHHHHHHHcCCcEEEEEECCCCccchhhhccc-cCCCCcEEEEEcCCcc------ccc---cCCce
Q 001999 229 RLKVNAKELDNAQRADNISKELKDKRYVLFLDGVSSEINFKEIGIH-DDHGRGKVVFACRSRE------FCW---QADDV 298 (984)
Q Consensus 229 ~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~~~-~~~~gs~ilvTTR~~~------v~~---~~~~~ 298 (984)
+....+.....+...+...-..++.+|++| ...+......+ -.....++|.||.... +.. .....
T Consensus 245 --g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD---~~~~~~~~L~~~l~~~~v~~I~at~~~~~~~~~~~d~al~rRf~~ 319 (758)
T 3pxi_A 245 --GTKYRGEFEDRLKKVMDEIRQAGNIILFID---AAIDASNILKPSLARGELQCIGATTLDEYRKYIEKDAALERRFQP 319 (758)
T ss_dssp ----------CTTHHHHHHHHHTCCCCEEEEC---C--------CCCTTSSSCEEEEECCTTTTHHHHTTCSHHHHSEEE
T ss_pred --cccccchHHHHHHHHHHHHHhcCCEEEEEc---CchhHHHHHHHHHhcCCEEEEeCCChHHHHHHhhccHHHHhhCcE
Confidence 000000011222233333344678899999 22222222233 1233456666665444 211 33367
Q ss_pred EEccCCChHHHHHHHHHHhCC
Q 001999 299 IHVERLSPREAKKLFWEVVGV 319 (984)
Q Consensus 299 ~~l~~L~~~~~~~Lf~~~~~~ 319 (984)
+.+...+.++..+++......
T Consensus 320 i~v~~p~~~~~~~il~~~~~~ 340 (758)
T 3pxi_A 320 IQVDQPSVDESIQILQGLRDR 340 (758)
T ss_dssp EECCCCCHHHHHHHHHHTTTT
T ss_pred EEeCCCCHHHHHHHHHHHHHH
Confidence 999999999999999876543
No 216
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.26 E-value=0.0039 Score=68.38 Aligned_cols=164 Identities=16% Similarity=0.191 Sum_probs=93.9
Q ss_pred CCCCchHHHHHHHHHHhcc-------------CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHH
Q 001999 154 SKFPSHKEYVETLEKHLSS-------------GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNIS 220 (984)
Q Consensus 154 ~~~vgr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~ 220 (984)
+++.|.++.+++|.+.+.- ...+-|-++|++|.|||.||++...... ..| +.+..+.-.
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~--~~f---i~v~~s~l~--- 253 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTS--ATF---LRIVGSELI--- 253 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHT--CEE---EEEESGGGC---
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhC--CCE---EEEEHHHhh---
Confidence 4568899888888766531 3467899999999999999999877766 333 333322211
Q ss_pred HHHHHHHHHhccCccccchHHHHHHHHHHH-cCCcEEEEEECCCCcc------------c----hhhhc--cc--cCCCC
Q 001999 221 DIQEIILERLKVNAKELDNAQRADNISKEL-KDKRYVLFLDGVSSEI------------N----FKEIG--IH--DDHGR 279 (984)
Q Consensus 221 ~i~~~i~~~l~~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~~------------~----~~~~~--~~--~~~~g 279 (984)
...... .+.....+.... +..+++|++|++.... . ...+. +. ....+
T Consensus 254 -----------sk~vGe-sek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ 321 (437)
T 4b4t_I 254 -----------QKYLGD-GPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGD 321 (437)
T ss_dssp -----------CSSSSH-HHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSS
T ss_pred -----------hccCch-HHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCC
Confidence 011111 122233333322 4578999999986420 0 01110 00 23344
Q ss_pred cEEEEEcCCccccc-------cCCceEEccCCChHHHHHHHHHHhCCC-CCCCcchHHHHHHHHHHcCCC
Q 001999 280 GKVVFACRSREFCW-------QADDVIHVERLSPREAKKLFWEVVGVN-LKKNPDIEQEADSIVEECGGM 341 (984)
Q Consensus 280 s~ilvTTR~~~v~~-------~~~~~~~l~~L~~~~~~~Lf~~~~~~~-~~~~~~l~~~~~~I~~~c~Gl 341 (984)
..||.||-...... .....+.+..-+.++-.++|+.+...- .....++ ..|++.+.|.
T Consensus 322 ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl----~~LA~~T~Gf 387 (437)
T 4b4t_I 322 VKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNL----ETLVTTKDDL 387 (437)
T ss_dssp EEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCH----HHHHHHCCSC
T ss_pred EEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCH----HHHHHhCCCC
Confidence 56666776555433 223457777777777788888776543 1222233 4566777775
No 217
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.23 E-value=0.00041 Score=72.06 Aligned_cols=82 Identities=22% Similarity=0.273 Sum_probs=51.5
Q ss_pred hcccccCeEecCCCcccccC---chhhhccCCCcEEEecCccccccchhhhccC--CCCeeecccccccCccccCCCCCC
Q 001999 564 SRLINLNALFLRSCSLLFQL---PKEIRYLQKLEILDVRHTRIQCLPSEIGQLI--KLKCLRVSWVENVGNHTHAGAWPG 638 (984)
Q Consensus 564 ~~l~~L~~L~L~~c~~l~~l---p~~i~~L~~L~~L~l~~~~l~~lp~~~~~L~--~L~~L~l~~~~~~~~~~l~~~~~~ 638 (984)
.++++|++|+|++|. ++.+ |..++.+++|++|+|++|.+..+ ..+..+. +|++|++. +|....
T Consensus 167 ~~l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~-----~Npl~~----- 234 (267)
T 3rw6_A 167 ENIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLD-----GNSLCD----- 234 (267)
T ss_dssp HHCTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECT-----TSTTGG-----
T ss_pred hhCCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEcc-----CCcCcc-----
Confidence 356778888888754 4443 35566778888888888877765 3344444 77778777 444322
Q ss_pred cccc------hhhhhccccccceeee
Q 001999 639 EMIS------SNIISKLCLLEELIIE 658 (984)
Q Consensus 639 ~~ip------~~~l~~L~~L~~L~l~ 658 (984)
.+| ..++..+++|+.|+-.
T Consensus 235 -~~~~~~~y~~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 235 -TFRDQSTYISAIRERFPKLLRLDGH 259 (267)
T ss_dssp -GCSSHHHHHHHHHHHCTTCCEESSC
T ss_pred -ccCcchhHHHHHHHHCcccCeECCc
Confidence 222 1346777777777654
No 218
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.18 E-value=0.0034 Score=71.59 Aligned_cols=165 Identities=13% Similarity=0.195 Sum_probs=96.7
Q ss_pred CCCCchHHHHHHHHHHhcc-------------CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHH
Q 001999 154 SKFPSHKEYVETLEKHLSS-------------GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNIS 220 (984)
Q Consensus 154 ~~~vgr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~ 220 (984)
.+++|.+..+++|.+++.. ...+-+.|+|++|+|||++|+....... ..| +.++.+
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~--~~f---v~vn~~------ 272 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG--AFF---FLINGP------ 272 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCS--SEE---EEEEHH------
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhC--CCE---EEEEch------
Confidence 4589999999998887742 3345688999999999999999776654 322 333321
Q ss_pred HHHHHHHHHhccCccccchHHHHHHHHHHHcCCcEEEEEECCCCc--------cc-----hhhh--ccc--cCCCCcEEE
Q 001999 221 DIQEIILERLKVNAKELDNAQRADNISKELKDKRYVLFLDGVSSE--------IN-----FKEI--GIH--DDHGRGKVV 283 (984)
Q Consensus 221 ~i~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--------~~-----~~~~--~~~--~~~~gs~il 283 (984)
.+ ... ............+.....+++.+|+||++... .+ ...+ .+. ....+..||
T Consensus 273 ~l----~~~----~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vI 344 (489)
T 3hu3_A 273 EI----MSK----LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVM 344 (489)
T ss_dssp HH----HTS----CTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEE
T ss_pred Hh----hhh----hcchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEE
Confidence 11 111 11111123334444455677899999998321 10 0111 011 223345666
Q ss_pred EEcCCccc-cc------cCCceEEccCCChHHHHHHHHHHhCCCC-CCCcchHHHHHHHHHHcCCC
Q 001999 284 FACRSREF-CW------QADDVIHVERLSPREAKKLFWEVVGVNL-KKNPDIEQEADSIVEECGGM 341 (984)
Q Consensus 284 vTTR~~~v-~~------~~~~~~~l~~L~~~~~~~Lf~~~~~~~~-~~~~~l~~~~~~I~~~c~Gl 341 (984)
.||..... .. .....+.+...+.++-.++++.++.... ....++ .++++.+.|.
T Consensus 345 aaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l----~~la~~t~g~ 406 (489)
T 3hu3_A 345 AATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDL----EQVANETHGH 406 (489)
T ss_dssp EEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCH----HHHHHTCTTC
T ss_pred EecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhH----HHHHHHccCC
Confidence 66665432 11 2344789999999999999998875431 122233 4566666664
No 219
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.13 E-value=0.00068 Score=63.74 Aligned_cols=45 Identities=16% Similarity=0.242 Sum_probs=34.3
Q ss_pred CCCchHHHHHHHHHHhcc--CCccEEEEEcCCCChHHHHHHHhhhhc
Q 001999 155 KFPSHKEYVETLEKHLSS--GGLKKICICGPLGVGKTTIMENSHDSV 199 (984)
Q Consensus 155 ~~vgr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~~~~~~ 199 (984)
+++|+...+.++.+.+.. ....-|.|+|..|+|||++|+..++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 578999999988887753 233456799999999999999966554
No 220
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.10 E-value=0.0032 Score=76.87 Aligned_cols=152 Identities=18% Similarity=0.210 Sum_probs=87.8
Q ss_pred CCCCCchHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHhhhhcccCC----CCCeEEEE-EeCCCCCHHHHHHHHH
Q 001999 153 ASKFPSHKEYVETLEKHLSSGGLKKICICGPLGVGKTTIMENSHDSVGESG----RFDIIFWV-NVNTDGNISDIQEIIL 227 (984)
Q Consensus 153 ~~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~----~F~~~~wv-~vs~~~~~~~i~~~i~ 227 (984)
...++||+.++..+++.|......-+.++|.+|+||||+|+.....+.... ..+..+|. ..+. +
T Consensus 185 ~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~------l----- 253 (758)
T 1r6b_X 185 IDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGS------L----- 253 (758)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC-------------
T ss_pred CCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHH------H-----
Confidence 356899999999999999876667788999999999999999655542101 12333332 1111 0
Q ss_pred HHhccCccccchHHHHHHHHHHHc-CCcEEEEEECCCCc----------cchhhhccc-cCCCCcEEEEEcCCcccc---
Q 001999 228 ERLKVNAKELDNAQRADNISKELK-DKRYVLFLDGVSSE----------INFKEIGIH-DDHGRGKVVFACRSREFC--- 292 (984)
Q Consensus 228 ~~l~~~~~~~~~~~~~~~l~~~L~-~kr~LlVlDdv~~~----------~~~~~~~~~-~~~~gs~ilvTTR~~~v~--- 292 (984)
+.........+.....+.+.+. .+..+|++||+... .+......+ -...+..+|.+|......
T Consensus 254 --~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~~~~~~I~at~~~~~~~~~ 331 (758)
T 1r6b_X 254 --LAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIF 331 (758)
T ss_dssp ---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSCCCEEEEEECHHHHHCCC
T ss_pred --hccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhCCCeEEEEEeCchHHhhhh
Confidence 0000000111223333333333 45799999999753 111122222 223345666666543211
Q ss_pred ---c---cCCceEEccCCChHHHHHHHHHHh
Q 001999 293 ---W---QADDVIHVERLSPREAKKLFWEVV 317 (984)
Q Consensus 293 ---~---~~~~~~~l~~L~~~~~~~Lf~~~~ 317 (984)
. .....+.+...+.++..+++...+
T Consensus 332 ~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 332 EKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp CCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred hcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 1 223368899999999988887654
No 221
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.06 E-value=0.0054 Score=65.79 Aligned_cols=47 Identities=23% Similarity=0.286 Sum_probs=37.6
Q ss_pred CCCCchHHHHHHHHHHhcc--------------CCccEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 154 SKFPSHKEYVETLEKHLSS--------------GGLKKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 154 ~~~vgr~~~~~~l~~~L~~--------------~~~~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
..++|.+..++.+...+.. .....+.++|++|+|||++|+...+...
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4589999999988877753 2345688999999999999999766664
No 222
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.05 E-value=0.00061 Score=67.08 Aligned_cols=98 Identities=17% Similarity=0.160 Sum_probs=64.3
Q ss_pred hhhhccCCCcEEEecCcccc-----ccchhhhccCCCCeeecccccccCccccCCCCCCc-ccchhhhhccccccceee-
Q 001999 585 KEIRYLQKLEILDVRHTRIQ-----CLPSEIGQLIKLKCLRVSWVENVGNHTHAGAWPGE-MISSNIISKLCLLEELII- 657 (984)
Q Consensus 585 ~~i~~L~~L~~L~l~~~~l~-----~lp~~~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~-~ip~~~l~~L~~L~~L~l- 657 (984)
..+...++|++|++++|.+. .+...+...++|++|+++ +|.... .|. .+. ..+...++|++|++
T Consensus 59 ~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~-----~N~i~~---~g~~~l~-~~L~~n~~L~~L~L~ 129 (185)
T 1io0_A 59 EALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVE-----SNFISG---SGILALV-EALQSNTSLIELRID 129 (185)
T ss_dssp HHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECC-----SSCCCH---HHHHHHH-HGGGGCSSCCEEECC
T ss_pred HHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECc-----CCcCCH---HHHHHHH-HHHHhCCCceEEEec
Confidence 34455577888888888776 345556777899999999 443221 000 111 23667788999999
Q ss_pred -eecCCchhHHhhhhhhhHHHhhccCCCceEEEecCCcc
Q 001999 658 -EVLDPSDRRWKQNVESIAGEIAALEQLTTLHFYFPTIK 695 (984)
Q Consensus 658 -~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 695 (984)
........ ....+...+...++|+.|+++++...
T Consensus 130 ~~~N~i~~~----g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 130 NQSQPLGNN----VEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp CCSSCCCHH----HHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred CCCCCCCHH----HHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 55444422 23445667778899999999987654
No 223
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.02 E-value=0.0048 Score=65.75 Aligned_cols=142 Identities=16% Similarity=0.135 Sum_probs=86.1
Q ss_pred chHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHhhhhccc--CCCCCeEEEEEeCC-CCCHHHHHHHHHHHhccCc
Q 001999 158 SHKEYVETLEKHLSSGGLKKICICGPLGVGKTTIMENSHDSVGE--SGRFDIIFWVNVNT-DGNISDIQEIILERLKVNA 234 (984)
Q Consensus 158 gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~--~~~F~~~~wv~vs~-~~~~~~i~~~i~~~l~~~~ 234 (984)
|-++.++.|.+.+..++.+.+-++|+.|+||||+|+...+.... ..+.+ ..++..+. ...+..+ +++++.+....
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d-~~~l~~~~~~~~id~i-r~li~~~~~~p 78 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASD-VLEIDPEGENIGIDDI-RTIKDFLNYSP 78 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTT-EEEECCSSSCBCHHHH-HHHHHHHTSCC
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCC-EEEEcCCcCCCCHHHH-HHHHHHHhhcc
Confidence 44566777888887766789999999999999999995443210 02333 34454432 2333333 33444432111
Q ss_pred cccchHHHHHHHHHHHcCCcEEEEEECCCCcc--chhhh--ccccCCCCcEEEEEcCCc-cccc--cCCceEEccCCChH
Q 001999 235 KELDNAQRADNISKELKDKRYVLFLDGVSSEI--NFKEI--GIHDDHGRGKVVFACRSR-EFCW--QADDVIHVERLSPR 307 (984)
Q Consensus 235 ~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~--~~~~~--~~~~~~~gs~ilvTTR~~-~v~~--~~~~~~~l~~L~~~ 307 (984)
..+++-++|+|++.... ..+.+ .+..-...+.+|++|.+. .+.. ... .+++.+++++
T Consensus 79 ---------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l~~~ 142 (305)
T 2gno_A 79 ---------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVNVPK 142 (305)
T ss_dssp ---------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECCCCH
T ss_pred ---------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCCCHH
Confidence 12567899999997643 22222 122334566777766443 3333 334 9999999999
Q ss_pred HHHHHHHHHh
Q 001999 308 EAKKLFWEVV 317 (984)
Q Consensus 308 ~~~~Lf~~~~ 317 (984)
+....+.+.+
T Consensus 143 ~i~~~L~~~~ 152 (305)
T 2gno_A 143 EFRDLVKEKI 152 (305)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998876
No 224
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.99 E-value=0.012 Score=66.51 Aligned_cols=166 Identities=16% Similarity=0.184 Sum_probs=94.8
Q ss_pred CCCCchHHHHHHHHHHhc---c---------CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHH
Q 001999 154 SKFPSHKEYVETLEKHLS---S---------GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISD 221 (984)
Q Consensus 154 ~~~vgr~~~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~ 221 (984)
.+++|.++.++++.+.+. . ...+-|.++|++|+||||||+....... ..| +.++.++-.+.
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~--~~f---~~is~~~~~~~-- 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEAN--VPF---FHISGSDFVEL-- 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHT--CCE---EEEEGGGTTTC--
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcC--CCe---eeCCHHHHHHH--
Confidence 468999888777665542 2 1234588999999999999999766654 333 33443332110
Q ss_pred HHHHHHHHhccCccccchHHHHHHHHHHHcCCcEEEEEECCCCcc----------------chhhhc--cc--cCCCCcE
Q 001999 222 IQEIILERLKVNAKELDNAQRADNISKELKDKRYVLFLDGVSSEI----------------NFKEIG--IH--DDHGRGK 281 (984)
Q Consensus 222 i~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~----------------~~~~~~--~~--~~~~gs~ 281 (984)
. ...........+.....+.+.+|++|++.... ....+. +. ....+..
T Consensus 89 --------~----~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~vi 156 (476)
T 2ce7_A 89 --------F----VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGII 156 (476)
T ss_dssp --------C----TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEE
T ss_pred --------H----hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEE
Confidence 0 00011222333444455788999999985420 011111 00 1233556
Q ss_pred EEEEcCCccccc-------cCCceEEccCCChHHHHHHHHHHhCCCC-CCCcchHHHHHHHHHHcCCCc
Q 001999 282 VVFACRSREFCW-------QADDVIHVERLSPREAKKLFWEVVGVNL-KKNPDIEQEADSIVEECGGMP 342 (984)
Q Consensus 282 ilvTTR~~~v~~-------~~~~~~~l~~L~~~~~~~Lf~~~~~~~~-~~~~~l~~~~~~I~~~c~GlP 342 (984)
||.||....... .....+.+...+.++-.++++.++.... ....+ ...|++.+.|..
T Consensus 157 VIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 157 VMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp EEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred EEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhh----HHHHHHhcCCCc
Confidence 677776654322 2334788888888888888887765431 11112 344777888876
No 225
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.80 E-value=0.0013 Score=61.55 Aligned_cols=44 Identities=9% Similarity=0.182 Sum_probs=32.6
Q ss_pred CCCchHHHHHHHHHHhcc--CCccEEEEEcCCCChHHHHHHHhhhh
Q 001999 155 KFPSHKEYVETLEKHLSS--GGLKKICICGPLGVGKTTIMENSHDS 198 (984)
Q Consensus 155 ~~vgr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~~~~~ 198 (984)
+++|++..+.++.+.+.. ....-|.|+|..|+|||++|+..+..
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHh
Confidence 478999888888877654 33345779999999999999996654
No 226
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.80 E-value=0.003 Score=67.90 Aligned_cols=59 Identities=14% Similarity=0.302 Sum_probs=42.3
Q ss_pred CCCchHHHHHHHHHHhccC---------CccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCC
Q 001999 155 KFPSHKEYVETLEKHLSSG---------GLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNT 215 (984)
Q Consensus 155 ~~vgr~~~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~ 215 (984)
.++|.+..++.+...+... ....+.++|+.|+||||+|+....... ..-...+.+..+.
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~--~~~~~~~~~~~~~ 85 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF--DTEEAMIRIDMTE 85 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHH--SCGGGEEEEEGGG
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHc--CCCcceEEeeccc
Confidence 4789999998888777541 135799999999999999999666653 2222345555554
No 227
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.72 E-value=0.0016 Score=68.50 Aligned_cols=148 Identities=13% Similarity=0.085 Sum_probs=78.7
Q ss_pred CCCCCchHHHHHHHHHHhcc------------CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHH
Q 001999 153 ASKFPSHKEYVETLEKHLSS------------GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNIS 220 (984)
Q Consensus 153 ~~~~vgr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~ 220 (984)
..+++|.+..++.+.+.+.. ...+.+.|+|++|+|||++|+....... ..|- .+..+.-.+
T Consensus 10 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~--~~~~---~v~~~~~~~-- 82 (268)
T 2r62_A 10 FKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAH--VPFF---SMGGSSFIE-- 82 (268)
T ss_dssp STTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHT--CCCC---CCCSCTTTT--
T ss_pred HHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhC--CCEE---EechHHHHH--
Confidence 45689988777776655431 1234477999999999999999766654 3331 111111000
Q ss_pred HHHHHHHHHhccCccccchHHHHHHHHHHHcCCcEEEEEECCCCcc-----------------chhhhccc-----cCCC
Q 001999 221 DIQEIILERLKVNAKELDNAQRADNISKELKDKRYVLFLDGVSSEI-----------------NFKEIGIH-----DDHG 278 (984)
Q Consensus 221 ~i~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~-----------------~~~~~~~~-----~~~~ 278 (984)
....... ......+......+..+|++||+.... ....+.-. ....
T Consensus 83 --------~~~~~~~----~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 150 (268)
T 2r62_A 83 --------MFVGLGA----SRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENA 150 (268)
T ss_dssp --------SCSSSCS----SSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCS
T ss_pred --------hhcchHH----HHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCC
Confidence 0000000 000111222223467899999995421 11111100 1122
Q ss_pred CcEEEEEcCCccccc-------cCCceEEccCCChHHHHHHHHHHhCC
Q 001999 279 RGKVVFACRSREFCW-------QADDVIHVERLSPREAKKLFWEVVGV 319 (984)
Q Consensus 279 gs~ilvTTR~~~v~~-------~~~~~~~l~~L~~~~~~~Lf~~~~~~ 319 (984)
...||.||....... .....+.+...+.++-.++++..+..
T Consensus 151 ~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~ 198 (268)
T 2r62_A 151 PVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKG 198 (268)
T ss_dssp CCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSS
T ss_pred CEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhc
Confidence 245666666553211 22356788888888888888776643
No 228
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.66 E-value=0.031 Score=58.52 Aligned_cols=146 Identities=13% Similarity=0.160 Sum_probs=81.8
Q ss_pred CCCCCchHHHHHHHHHHhcc-------------CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCH
Q 001999 153 ASKFPSHKEYVETLEKHLSS-------------GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNI 219 (984)
Q Consensus 153 ~~~~vgr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~ 219 (984)
..++.|.++.++.|.+.+.. .-.+-+.++|+.|+||||||+....... . ..+.+..++-.+.
T Consensus 9 ~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~--~---~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 9 WADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESG--L---NFISVKGPELLNM 83 (274)
T ss_dssp ---CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTT--C---EEEEEETTTTCSS
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcC--C---CEEEEEcHHHHhh
Confidence 35678888888887765431 1123499999999999999999766654 2 2444543321110
Q ss_pred HHHHHHHHHHhccCccccchHHHHHHHHHHH-cCCcEEEEEECCCCcc---------ch----hhh--ccc--cCCCCcE
Q 001999 220 SDIQEIILERLKVNAKELDNAQRADNISKEL-KDKRYVLFLDGVSSEI---------NF----KEI--GIH--DDHGRGK 281 (984)
Q Consensus 220 ~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~~---------~~----~~~--~~~--~~~~gs~ 281 (984)
. .. ........+.+.. .....++++|++.... .. ..+ .+. ......-
T Consensus 84 ~--------------~~-~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i 148 (274)
T 2x8a_A 84 Y--------------VG-ESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVF 148 (274)
T ss_dssp T--------------TH-HHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEE
T ss_pred h--------------hh-HHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEE
Confidence 0 00 0011222222222 3567899999986421 00 111 011 1223344
Q ss_pred EEEEcCCccccc-------cCCceEEccCCChHHHHHHHHHHhC
Q 001999 282 VVFACRSREFCW-------QADDVIHVERLSPREAKKLFWEVVG 318 (984)
Q Consensus 282 ilvTTR~~~v~~-------~~~~~~~l~~L~~~~~~~Lf~~~~~ 318 (984)
++.+|....+.. .....+.++.-+.++-.++++....
T Consensus 149 ~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~ 192 (274)
T 2x8a_A 149 IMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITK 192 (274)
T ss_dssp EEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTT
T ss_pred EEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHh
Confidence 556676665544 3456788888888888888887764
No 229
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.56 E-value=0.016 Score=65.78 Aligned_cols=55 Identities=11% Similarity=-0.067 Sum_probs=37.2
Q ss_pred cCCceEEccCCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHc-CCCchHHHHHHH
Q 001999 294 QADDVIHVERLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEEC-GGMPYMLKLIGK 350 (984)
Q Consensus 294 ~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c-~GlPlai~~~~~ 350 (984)
.....+.+.+++.++..+.+.+.+.... ..--++....|++.+ +|.|..+..+..
T Consensus 356 sR~~~~~~~~~~~~e~~~iL~~~~~~~~--~~~~~~~~~~i~~~a~~g~~r~a~~ll~ 411 (456)
T 2c9o_A 356 DRVMIIRTMLYTPQEMKQIIKIRAQTEG--INISEEALNHLGEIGTKTTLRYSVQLLT 411 (456)
T ss_dssp TTEEEEECCCCCHHHHHHHHHHHHHHHT--CCBCHHHHHHHHHHHHHSCHHHHHHTHH
T ss_pred hhcceeeCCCCCHHHHHHHHHHHHHHhC--CCCCHHHHHHHHHHccCCCHHHHHHHHH
Confidence 4445689999999999999988764221 111244677888888 888876554433
No 230
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.52 E-value=0.0016 Score=61.39 Aligned_cols=40 Identities=15% Similarity=0.176 Sum_probs=28.3
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCC
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNT 215 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~ 215 (984)
....++|+|+.|+|||||++........ ..+ ..+++...+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~-~~~~~~~~~ 74 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGK-NAAYIDAAS 74 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTC-CEEEEETTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCC-cEEEEcHHH
Confidence 5678999999999999999995555431 222 256666544
No 231
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.50 E-value=0.018 Score=68.94 Aligned_cols=165 Identities=15% Similarity=0.221 Sum_probs=93.5
Q ss_pred CCCCchHHHHHHHHHHhc----c---------CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHH
Q 001999 154 SKFPSHKEYVETLEKHLS----S---------GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNIS 220 (984)
Q Consensus 154 ~~~vgr~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~ 220 (984)
+++.|.++.+++|.+++. . ...+-|.++|++|+|||+||+.+..... .+| +.|+.++
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg--~~~---~~v~~~~----- 273 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG--AFF---FLINGPE----- 273 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTT--CEE---EEEEHHH-----
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC--CeE---EEEEhHH-----
Confidence 456788777777766542 1 2457899999999999999999887765 332 3343211
Q ss_pred HHHHHHHHHhccCccccchHHHHHHHHHHHcCCcEEEEEECCCCcc--------ch-----hhh-----ccccCCCCcEE
Q 001999 221 DIQEIILERLKVNAKELDNAQRADNISKELKDKRYVLFLDGVSSEI--------NF-----KEI-----GIHDDHGRGKV 282 (984)
Q Consensus 221 ~i~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~--------~~-----~~~-----~~~~~~~gs~i 282 (984)
+ . ..........+...+....+..+.+|++|++.... +. ..+ .+ ....+--|
T Consensus 274 -l----~----sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~-~~~~~V~V 343 (806)
T 3cf2_A 274 -I----M----SKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGL-KQRAHVIV 343 (806)
T ss_dssp -H----H----SSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHC-CGGGCEEE
T ss_pred -h----h----cccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcc-cccCCEEE
Confidence 1 1 11111111222222333335678999999986421 11 111 11 12223445
Q ss_pred EEEcCCccccc-------cCCceEEccCCChHHHHHHHHHHhCCC-CCCCcchHHHHHHHHHHcCCCc
Q 001999 283 VFACRSREFCW-------QADDVIHVERLSPREAKKLFWEVVGVN-LKKNPDIEQEADSIVEECGGMP 342 (984)
Q Consensus 283 lvTTR~~~v~~-------~~~~~~~l~~L~~~~~~~Lf~~~~~~~-~~~~~~l~~~~~~I~~~c~GlP 342 (984)
|.||....... .....+.+..-+.++-.++++.+.... .....+ ..+|++++.|.-
T Consensus 344 IaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvd----l~~lA~~T~Gfs 407 (806)
T 3cf2_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD----LEQVANETHGHV 407 (806)
T ss_dssp EEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCC----HHHHHHHCCSCC
T ss_pred EEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhcCCCC
Confidence 55655443322 245578888888888888888765443 222223 345778888764
No 232
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.31 E-value=0.07 Score=55.12 Aligned_cols=164 Identities=15% Similarity=0.170 Sum_probs=84.9
Q ss_pred CCCCchHHHHHHHHHHhc---c---------CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHH
Q 001999 154 SKFPSHKEYVETLEKHLS---S---------GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISD 221 (984)
Q Consensus 154 ~~~vgr~~~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~ 221 (984)
.+++|.++.+.++.+... . .-.+-+.|+|+.|+||||||+....... .. .+.+... .
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~--~~---~i~~~~~------~ 84 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR--VP---FITASGS------D 84 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT--CC---EEEEEHH------H
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC--CC---EEEeeHH------H
Confidence 567888776665544332 1 1123489999999999999999766654 22 2333211 1
Q ss_pred HHHHHHHHhccCccccchHHHHHHHHHHHc-CCcEEEEEECCCCc------------cch----hhh--ccccC--CCCc
Q 001999 222 IQEIILERLKVNAKELDNAQRADNISKELK-DKRYVLFLDGVSSE------------INF----KEI--GIHDD--HGRG 280 (984)
Q Consensus 222 i~~~i~~~l~~~~~~~~~~~~~~~l~~~L~-~kr~LlVlDdv~~~------------~~~----~~~--~~~~~--~~gs 280 (984)
+ ..... . ........+.+... ....++++|++... ..+ ..+ .+..+ ....
T Consensus 85 ~----~~~~~----~-~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~ 155 (254)
T 1ixz_A 85 F----VEMFV----G-VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAI 155 (254)
T ss_dssp H----HHSCT----T-HHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCE
T ss_pred H----HHHHh----h-HHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCE
Confidence 1 11000 0 00112223333332 45689999998421 111 111 11111 1223
Q ss_pred EEEEEcCCccccc-------cCCceEEccCCChHHHHHHHHHHhCCCC-CCCcchHHHHHHHHHHcCCC
Q 001999 281 KVVFACRSREFCW-------QADDVIHVERLSPREAKKLFWEVVGVNL-KKNPDIEQEADSIVEECGGM 341 (984)
Q Consensus 281 ~ilvTTR~~~v~~-------~~~~~~~l~~L~~~~~~~Lf~~~~~~~~-~~~~~l~~~~~~I~~~c~Gl 341 (984)
-++.||....+.. .....+.+...+.++-.++++..+.... ....+ ...|++.+.|.
T Consensus 156 i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~----~~~la~~~~G~ 220 (254)
T 1ixz_A 156 VVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD----LALLAKRTPGF 220 (254)
T ss_dssp EEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTC
T ss_pred EEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccC----HHHHHHHcCCC
Confidence 4445666555433 2345788888888888888877654321 11122 23466666664
No 233
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.23 E-value=0.094 Score=55.45 Aligned_cols=27 Identities=26% Similarity=0.197 Sum_probs=23.2
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
..+.+.++|++|+|||+||+...+...
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346788999999999999999777775
No 234
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.18 E-value=0.081 Score=55.49 Aligned_cols=166 Identities=14% Similarity=0.160 Sum_probs=86.3
Q ss_pred CCCCCchHHHHHHHHHHhc---c---------CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHH
Q 001999 153 ASKFPSHKEYVETLEKHLS---S---------GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNIS 220 (984)
Q Consensus 153 ~~~~vgr~~~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~ 220 (984)
..+++|.++.++++.+... . .-.+-+.|+|+.|+||||||+....... .. .+.+..+
T Consensus 39 ~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~--~~---~i~~~~~------ 107 (278)
T 1iy2_A 39 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR--VP---FITASGS------ 107 (278)
T ss_dssp GGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT--CC---EEEEEHH------
T ss_pred HHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC--CC---EEEecHH------
Confidence 3568898877666654432 1 1122389999999999999999666654 22 2333211
Q ss_pred HHHHHHHHHhccCccccchHHHHHHHHHHH-cCCcEEEEEECCCCc------------cchh----hh--ccccC--CCC
Q 001999 221 DIQEIILERLKVNAKELDNAQRADNISKEL-KDKRYVLFLDGVSSE------------INFK----EI--GIHDD--HGR 279 (984)
Q Consensus 221 ~i~~~i~~~l~~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~------------~~~~----~~--~~~~~--~~g 279 (984)
.+ ..... . ........+.+.. .....++|+|++... ..+. .+ .+... ...
T Consensus 108 ~~----~~~~~----~-~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~ 178 (278)
T 1iy2_A 108 DF----VEMFV----G-VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTA 178 (278)
T ss_dssp HH----HHSTT----T-HHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCC
T ss_pred HH----HHHHh----h-HHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCC
Confidence 11 11000 0 0011122222322 345689999998421 1111 11 11111 122
Q ss_pred cEEEEEcCCccccc-------cCCceEEccCCChHHHHHHHHHHhCCCC-CCCcchHHHHHHHHHHcCCCc
Q 001999 280 GKVVFACRSREFCW-------QADDVIHVERLSPREAKKLFWEVVGVNL-KKNPDIEQEADSIVEECGGMP 342 (984)
Q Consensus 280 s~ilvTTR~~~v~~-------~~~~~~~l~~L~~~~~~~Lf~~~~~~~~-~~~~~l~~~~~~I~~~c~GlP 342 (984)
..++.||....+.. .....+.+...+.++-.++++..+.... ....+ ...+++.+.|..
T Consensus 179 ~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~----~~~la~~~~G~~ 245 (278)
T 1iy2_A 179 IVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD----LALLAKRTPGFV 245 (278)
T ss_dssp EEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred EEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccC----HHHHHHHcCCCC
Confidence 34445566555433 2455788888888888888877664321 11112 234666666644
No 235
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.11 E-value=0.0091 Score=63.74 Aligned_cols=46 Identities=17% Similarity=0.220 Sum_probs=35.7
Q ss_pred CCCCchHHHHHHHHHHhcc--CCccEEEEEcCCCChHHHHHHHhhhhc
Q 001999 154 SKFPSHKEYVETLEKHLSS--GGLKKICICGPLGVGKTTIMENSHDSV 199 (984)
Q Consensus 154 ~~~vgr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~~~~~~ 199 (984)
+.++|+...+.++.+.+.. .....|.|+|..|+|||++|+..+...
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 3588999998888877754 334567799999999999999965543
No 236
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.06 E-value=0.025 Score=68.87 Aligned_cols=147 Identities=12% Similarity=0.171 Sum_probs=82.9
Q ss_pred CCCCchHHHHHHHHHHhcc-------------CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHH
Q 001999 154 SKFPSHKEYVETLEKHLSS-------------GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNIS 220 (984)
Q Consensus 154 ~~~vgr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~ 220 (984)
.+++|.+..+++|.+++.. .....|.|+|++|+||||||+....... ..| +.+..+.
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~--~~~---i~v~~~~----- 273 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG--AFF---FLINGPE----- 273 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTT--CEE---EEEEHHH-----
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC--CcE---EEEEchH-----
Confidence 4578988888888777642 3456799999999999999999776665 333 3333211
Q ss_pred HHHHHHHHHhccCccccchHHHHHHHHHHHcCCcEEEEEECCCCcc--------c-----hhhh-c-cc--cCCCCcEEE
Q 001999 221 DIQEIILERLKVNAKELDNAQRADNISKELKDKRYVLFLDGVSSEI--------N-----FKEI-G-IH--DDHGRGKVV 283 (984)
Q Consensus 221 ~i~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~--------~-----~~~~-~-~~--~~~~gs~il 283 (984)
+...............+.........++++|++.... + ...+ . +. ....+..+|
T Consensus 274 ---------l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI 344 (806)
T 1ypw_A 274 ---------IMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVM 344 (806)
T ss_dssp ---------HSSSSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEE
T ss_pred ---------hhhhhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEe
Confidence 1111111111222333334444578899999984311 0 0111 0 01 122334555
Q ss_pred EEcCCccccc-------cCCceEEccCCChHHHHHHHHHHhCC
Q 001999 284 FACRSREFCW-------QADDVIHVERLSPREAKKLFWEVVGV 319 (984)
Q Consensus 284 vTTR~~~v~~-------~~~~~~~l~~L~~~~~~~Lf~~~~~~ 319 (984)
.||....-.. .....+.+...+.++-.+++...+..
T Consensus 345 ~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~ 387 (806)
T 1ypw_A 345 AATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKN 387 (806)
T ss_dssp EECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTT
T ss_pred cccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhc
Confidence 5555432222 22345778888888888888876543
No 237
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.95 E-value=0.0087 Score=72.91 Aligned_cols=143 Identities=16% Similarity=0.254 Sum_probs=79.0
Q ss_pred CCCCchHHHHHHHHHHhcc-------C--CccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHH
Q 001999 154 SKFPSHKEYVETLEKHLSS-------G--GLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQE 224 (984)
Q Consensus 154 ~~~vgr~~~~~~l~~~L~~-------~--~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~ 224 (984)
..++|.+..++.+.+.+.. + ....+.++|++|+|||++|+...+... ..-...+.++.+.-.+....
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~--~~~~~~i~i~~s~~~~~~~~-- 566 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIF--GDEESMIRIDMSEYMEKHST-- 566 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHH--SCTTCEEEEEGGGGCSSCCC--
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc--CCCcceEEEechhccccccc--
Confidence 4689999999888887753 1 123699999999999999999666653 22233455555432110000
Q ss_pred HHHHHhccCccccchHHHHHHHHHHHcCCcEEEEEECCCCcc--chhhh-------ccc------cCCCCcEEEEEcCCc
Q 001999 225 IILERLKVNAKELDNAQRADNISKELKDKRYVLFLDGVSSEI--NFKEI-------GIH------DDHGRGKVVFACRSR 289 (984)
Q Consensus 225 ~i~~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~--~~~~~-------~~~------~~~~gs~ilvTTR~~ 289 (984)
........++ +...-+|+||++.... ....+ .+. ....+..||+||...
T Consensus 567 -------------~~~~l~~~~~---~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~ 630 (758)
T 3pxi_A 567 -------------SGGQLTEKVR---RKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVG 630 (758)
T ss_dssp -------------C---CHHHHH---HCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSS
T ss_pred -------------ccchhhHHHH---hCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCC
Confidence 0011111111 1234589999997542 11111 111 122456888888631
Q ss_pred c-------------ccc----cCCceEEccCCChHHHHHHHHHH
Q 001999 290 E-------------FCW----QADDVIHVERLSPREAKKLFWEV 316 (984)
Q Consensus 290 ~-------------v~~----~~~~~~~l~~L~~~~~~~Lf~~~ 316 (984)
. ... .....+.+.+++.++-..++...
T Consensus 631 ~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~ 674 (758)
T 3pxi_A 631 ASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLM 674 (758)
T ss_dssp TTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHH
Confidence 1 111 33357888888887777776654
No 238
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.77 E-value=0.096 Score=59.45 Aligned_cols=163 Identities=13% Similarity=0.142 Sum_probs=87.8
Q ss_pred CCCCCchHHHHHHHHHHh---ccC---------CccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHH
Q 001999 153 ASKFPSHKEYVETLEKHL---SSG---------GLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNIS 220 (984)
Q Consensus 153 ~~~~vgr~~~~~~l~~~L---~~~---------~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~ 220 (984)
..+++|.++.+.++.+.. ... -.+-+.|+|++|+||||||+....... .. .+.++.++-.+
T Consensus 30 f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~--~~---~i~i~g~~~~~-- 102 (499)
T 2dhr_A 30 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR--VP---FITASGSDFVE-- 102 (499)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT--CC---EEEEEGGGGTS--
T ss_pred HHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC--CC---EEEEehhHHHH--
Confidence 456899988777665543 221 123489999999999999999766654 32 23444332100
Q ss_pred HHHHHHHHHhccCccccchHHHHHHHHHHHc----CCcEEEEEECCCCc------------cch----hhh--ccc--cC
Q 001999 221 DIQEIILERLKVNAKELDNAQRADNISKELK----DKRYVLFLDGVSSE------------INF----KEI--GIH--DD 276 (984)
Q Consensus 221 ~i~~~i~~~l~~~~~~~~~~~~~~~l~~~L~----~kr~LlVlDdv~~~------------~~~----~~~--~~~--~~ 276 (984)
. . .......+...++ ....++++|++... ..+ ..+ .+. ..
T Consensus 103 ------------~---~-~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~ 166 (499)
T 2dhr_A 103 ------------M---F-VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK 166 (499)
T ss_dssp ------------S---C-TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCS
T ss_pred ------------h---h-hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccccc
Confidence 0 0 0111122333332 23579999998532 111 111 111 11
Q ss_pred CCCcEEEEEcCCccccc-------cCCceEEccCCChHHHHHHHHHHhCCC-CCCCcchHHHHHHHHHHcCCCc
Q 001999 277 HGRGKVVFACRSREFCW-------QADDVIHVERLSPREAKKLFWEVVGVN-LKKNPDIEQEADSIVEECGGMP 342 (984)
Q Consensus 277 ~~gs~ilvTTR~~~v~~-------~~~~~~~l~~L~~~~~~~Lf~~~~~~~-~~~~~~l~~~~~~I~~~c~GlP 342 (984)
..+..|+.||....+.. .....+.+..-+.++-.++++.++... .....+ ...|++.+.|..
T Consensus 167 ~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~----l~~lA~~t~G~~ 236 (499)
T 2dhr_A 167 DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD----LALLAKRTPGFV 236 (499)
T ss_dssp SCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSST----THHHHTTSCSCC
T ss_pred CccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHH----HHHHHHhcCCCC
Confidence 23345556666655433 234578888888888888887665432 111111 234566666654
No 239
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.73 E-value=0.037 Score=64.12 Aligned_cols=47 Identities=26% Similarity=0.414 Sum_probs=35.4
Q ss_pred CCCCchHHHHHHHHHHhcc------CCccEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 154 SKFPSHKEYVETLEKHLSS------GGLKKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 154 ~~~vgr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
.+++|.++..+.+.+.+.- ....++.++|++|+||||||+.......
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~ 133 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLG 133 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHT
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3468888877776554421 3466899999999999999999766664
No 240
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.72 E-value=0.034 Score=55.96 Aligned_cols=86 Identities=14% Similarity=0.224 Sum_probs=51.6
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHHHHHhccC-----------cc-ccch-
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEIILERLKVN-----------AK-ELDN- 239 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~-----------~~-~~~~- 239 (984)
....++.|+|.+|+||||||...... . . ..++|++....++..++.+ +.+..+.. .. ....
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~~-~--~--~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGLL-S--G--KKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQ 91 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHHH-H--C--SEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHH
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHHH-c--C--CcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHH
Confidence 35679999999999999999994331 1 1 3678888777666665543 33333221 00 0111
Q ss_pred HHHHHHHHHHHcCCcEEEEEECCCC
Q 001999 240 AQRADNISKELKDKRYVLFLDGVSS 264 (984)
Q Consensus 240 ~~~~~~l~~~L~~kr~LlVlDdv~~ 264 (984)
......++..++.+.-+||+|.+-.
T Consensus 92 ~~~~~~~~~l~~~~~~lliiD~~~~ 116 (220)
T 2cvh_A 92 RRVIGSLKKTVDSNFALVVVDSITA 116 (220)
T ss_dssp HHHHHHHHHHCCTTEEEEEEECCCC
T ss_pred HHHHHHHHHHhhcCCCEEEEcCcHH
Confidence 2233444444434577899998754
No 241
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.53 E-value=0.0066 Score=63.98 Aligned_cols=70 Identities=17% Similarity=0.252 Sum_probs=43.0
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEe--CCCCCHHHHHHHHHHHhccCccccchHHHHHHHHHHHc
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNV--NTDGNISDIQEIILERLKVNAKELDNAQRADNISKELK 251 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~v--s~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~L~ 251 (984)
..+++.|+|++|+||||||.+....-. ..++|++. ....+. . ....+.....+.+.+.
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~~G-----~~VlyIs~~~eE~v~~----------~-----~~~le~~l~~i~~~l~ 181 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEALG-----GKDKYATVRFGEPLSG----------Y-----NTDFNVFVDDIARAML 181 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHHHH-----TTSCCEEEEBSCSSTT----------C-----BCCHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhCC-----CCEEEEEecchhhhhh----------h-----hcCHHHHHHHHHHHHh
Confidence 346778999999999999999433211 12345665 322111 0 0112445555666666
Q ss_pred CCcEEEEEECCCC
Q 001999 252 DKRYVLFLDGVSS 264 (984)
Q Consensus 252 ~kr~LlVlDdv~~ 264 (984)
..+ +||+|++..
T Consensus 182 ~~~-LLVIDsI~a 193 (331)
T 2vhj_A 182 QHR-VIVIDSLKN 193 (331)
T ss_dssp HCS-EEEEECCTT
T ss_pred hCC-EEEEecccc
Confidence 666 999999874
No 242
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.37 E-value=0.038 Score=59.70 Aligned_cols=85 Identities=15% Similarity=0.157 Sum_probs=54.0
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHHHHHhccCccc-----cch-HHHHHHHH
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEIILERLKVNAKE-----LDN-AQRADNIS 247 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~-----~~~-~~~~~~l~ 247 (984)
.-.++.|+|++|+||||||.+....+. ..=..++|++....++.. .++.++...+. ... ++....+.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~--~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQ--KMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 467999999999999999999444432 111347888887777754 44555443221 111 44445555
Q ss_pred HHHc-CCcEEEEEECCCCc
Q 001999 248 KELK-DKRYVLFLDGVSSE 265 (984)
Q Consensus 248 ~~L~-~kr~LlVlDdv~~~ 265 (984)
..++ .+.-++|+|.+...
T Consensus 133 ~l~~~~~~dlvVIDSi~~l 151 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSVAAL 151 (356)
T ss_dssp HHHHTSCCSEEEEECTTTC
T ss_pred HHhhhcCCCeEEehHhhhh
Confidence 5444 45668999998543
No 243
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.24 E-value=0.083 Score=54.01 Aligned_cols=90 Identities=12% Similarity=0.104 Sum_probs=54.1
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhhcccCC----CCCeEEEEEeCCCCCHHHHHHHHHHHhccCcc----------ccch
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDSVGESG----RFDIIFWVNVNTDGNISDIQEIILERLKVNAK----------ELDN 239 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~----~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~----------~~~~ 239 (984)
.-.++.|+|++|+|||||++.....+.... .-..++|+.....++...+. ++++.++.... ....
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNT 101 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCH
Confidence 567999999999999999999444221001 23578899877766655443 34444443220 1111
Q ss_pred H---HHHHHHHHHHc-CCcEEEEEECCCC
Q 001999 240 A---QRADNISKELK-DKRYVLFLDGVSS 264 (984)
Q Consensus 240 ~---~~~~~l~~~L~-~kr~LlVlDdv~~ 264 (984)
. .....+.+.+. .+.-+||+|.+..
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 102 DHQTQLLYQASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEeCchH
Confidence 2 22333445554 4677899999864
No 244
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.22 E-value=0.071 Score=57.36 Aligned_cols=90 Identities=13% Similarity=0.179 Sum_probs=56.2
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhhcccCC----CCCeEEEEEeCCCCCHHHHHHHHHHHhccCcc---------cc-ch
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDSVGESG----RFDIIFWVNVNTDGNISDIQEIILERLKVNAK---------EL-DN 239 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~----~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~---------~~-~~ 239 (984)
...++.|+|.+|+||||||.+....+.... .-..++|++....++..++.+ +++.++.+.. .. ..
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~l~~~~~~~~ 184 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALGLDIDNVMNNIYYIRAINT 184 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhCCCHHHHhccEEEEeCCCH
Confidence 457999999999999999999443332100 024789999888888777654 4455544321 11 11
Q ss_pred H---HHHHHHHHHHc--CCcEEEEEECCCC
Q 001999 240 A---QRADNISKELK--DKRYVLFLDGVSS 264 (984)
Q Consensus 240 ~---~~~~~l~~~L~--~kr~LlVlDdv~~ 264 (984)
+ ++...+...++ .+.-+||+|.+..
T Consensus 185 ~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~ 214 (324)
T 2z43_A 185 DHQIAIVDDLQELVSKDPSIKLIVVDSVTS 214 (324)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEEETTTTH
T ss_pred HHHHHHHHHHHHHHHhccCCCEEEEeCcHH
Confidence 2 23444555554 4567888888753
No 245
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=94.96 E-value=0.11 Score=56.33 Aligned_cols=91 Identities=13% Similarity=0.218 Sum_probs=55.8
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhcccCC----CCCeEEEEEeCCCCCHHHHHHHHHHHhccCcc---------cc-c
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSVGESG----RFDIIFWVNVNTDGNISDIQEIILERLKVNAK---------EL-D 238 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~----~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~---------~~-~ 238 (984)
....++.|+|.+|+||||||.+....+.... .-..++|++....++..++.+ +++.++.+.. .. +
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g~~~~~~l~~l~~~~~~~ 198 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFNVDHDAVLDNVLYARAYT 198 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcCCCHHHHHhceeEeecCC
Confidence 4567999999999999999999443322001 224789999888888776654 3445543321 01 1
Q ss_pred h---HHHHHHHHHHHc---CCcEEEEEECCCC
Q 001999 239 N---AQRADNISKELK---DKRYVLFLDGVSS 264 (984)
Q Consensus 239 ~---~~~~~~l~~~L~---~kr~LlVlDdv~~ 264 (984)
. .++...+.+.++ .+.-+||+|.+..
T Consensus 199 ~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~ 230 (343)
T 1v5w_A 199 SEHQMELLDYVAAKFHEEAGIFKLLIIDSIMA 230 (343)
T ss_dssp TTHHHHHHHHHHHHHHHSCSSEEEEEEETSGG
T ss_pred HHHHHHHHHHHHHHHHhcCCCccEEEEechHH
Confidence 1 223334444443 4566888888753
No 246
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.79 E-value=0.024 Score=56.34 Aligned_cols=42 Identities=21% Similarity=0.275 Sum_probs=32.9
Q ss_pred chHHHHHHHHHHhcc---CCccEEEEEcCCCChHHHHHHHhhhhc
Q 001999 158 SHKEYVETLEKHLSS---GGLKKICICGPLGVGKTTIMENSHDSV 199 (984)
Q Consensus 158 gr~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~~~~~~ 199 (984)
.|++.+++|.+.+.. ....+|+|+|..|+||||+++......
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp CHHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 356677778777764 456899999999999999999955444
No 247
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.64 E-value=0.038 Score=59.45 Aligned_cols=96 Identities=18% Similarity=0.228 Sum_probs=53.4
Q ss_pred HHHHHhcc-CCccEEEEEcCCCChHHHHHHHhhhhccc-CCCCCeEEEEEeCCCCCHHHHHHHHHHHhcc-----Ccccc
Q 001999 165 TLEKHLSS-GGLKKICICGPLGVGKTTIMENSHDSVGE-SGRFDIIFWVNVNTDGNISDIQEIILERLKV-----NAKEL 237 (984)
Q Consensus 165 ~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~~~~~~~~-~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~-----~~~~~ 237 (984)
++++.+.. .....++|+|..|+|||||++.....+.. ...+.+ +++-+.+... ++ .++.+.+.. ..++.
T Consensus 163 raID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~-I~~lIGER~~--Ev-~~~~~~~~~~vV~atadep 238 (422)
T 3ice_A 163 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVL-MVLLIDERPE--EV-TEMQRLVKGEVVASTFDEP 238 (422)
T ss_dssp HHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEE-EEEEESSCHH--HH-HHHHTTCSSEEEEECTTSC
T ss_pred eeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeE-EEEEecCChH--HH-HHHHHHhCeEEEEeCCCCC
Confidence 45565554 55679999999999999999985554421 123433 4577776432 11 122333311 11111
Q ss_pred ch-----HHHHHHHHHHH--cCCcEEEEEECCCC
Q 001999 238 DN-----AQRADNISKEL--KDKRYVLFLDGVSS 264 (984)
Q Consensus 238 ~~-----~~~~~~l~~~L--~~kr~LlVlDdv~~ 264 (984)
.. ....-.+.+++ +|+.+||++||+-.
T Consensus 239 ~~~r~~~a~~alt~AEyfrd~G~dVLil~DslTR 272 (422)
T 3ice_A 239 ASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITR 272 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEEEEeCchH
Confidence 11 11112223333 58999999999854
No 248
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=94.60 E-value=0.12 Score=57.25 Aligned_cols=98 Identities=19% Similarity=0.246 Sum_probs=62.0
Q ss_pred HHHHHhcc-CCccEEEEEcCCCChHHHHHHHhhhhc-ccCCCCCeEEEEEeCCCCC-HHHHHHHHHHHhccC--------
Q 001999 165 TLEKHLSS-GGLKKICICGPLGVGKTTIMENSHDSV-GESGRFDIIFWVNVNTDGN-ISDIQEIILERLKVN-------- 233 (984)
Q Consensus 165 ~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~~~~~~-~~~~~F~~~~wv~vs~~~~-~~~i~~~i~~~l~~~-------- 233 (984)
+.++.|.. .+-.-++|+|..|+|||+|+++....+ + .+-+..+++-+.+... +.++.+++.+.=...
T Consensus 142 r~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~~--~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rt 219 (482)
T 2ck3_D 142 KVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAK--AHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKV 219 (482)
T ss_dssp HHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHTTT--TCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCE
T ss_pred EEEecccccccCCeeeeecCCCCChHHHHHHHHHhhHh--hCCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceE
Confidence 34555654 556789999999999999999955443 3 4446788888887653 566677776542211
Q ss_pred ------ccccch-----HHHHHHHHHHH---cCCcEEEEEECCCC
Q 001999 234 ------AKELDN-----AQRADNISKEL---KDKRYVLFLDGVSS 264 (984)
Q Consensus 234 ------~~~~~~-----~~~~~~l~~~L---~~kr~LlVlDdv~~ 264 (984)
.+.... ....-.+.+++ +|+.+||++||+-.
T Consensus 220 vvV~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~dVLll~DsitR 264 (482)
T 2ck3_D 220 ALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFR 264 (482)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTHH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 011111 12223344444 47899999999853
No 249
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.56 E-value=0.071 Score=54.06 Aligned_cols=111 Identities=14% Similarity=0.093 Sum_probs=57.5
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHHHHHhccCccc-----------------
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEIILERLKVNAKE----------------- 236 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~----------------- 236 (984)
.-.+++|+|..|+|||||++........ .. ..++|+.... ....+...+. .++.....
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~-~~-~~v~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLR-DG-DPCIYVTTEE--SRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEKE 96 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHH-HT-CCEEEEESSS--CHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC----
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHH-CC-CeEEEEEccc--CHHHHHHHHH-HhcchHHHHhhCCEEEEeccccccC
Confidence 4579999999999999999994433220 11 2456665433 4444444332 33221110
Q ss_pred -------cchHHHHHHHHHHHc---CCcEEEEEECCCCcc--c---hhhh--ccc--cCCCCcEEEEEcCCc
Q 001999 237 -------LDNAQRADNISKELK---DKRYVLFLDGVSSEI--N---FKEI--GIH--DDHGRGKVVFACRSR 289 (984)
Q Consensus 237 -------~~~~~~~~~l~~~L~---~kr~LlVlDdv~~~~--~---~~~~--~~~--~~~~gs~ilvTTR~~ 289 (984)
.+.++....+.+.+. -+..+||+|..-... + ...+ .+. ....|..||+||...
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 97 DQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred ceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 011344444444432 233499999986321 1 1222 111 123578888888654
No 250
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=94.43 E-value=0.43 Score=51.61 Aligned_cols=160 Identities=8% Similarity=-0.056 Sum_probs=96.2
Q ss_pred HHHhccCCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHHHHHhccCccccchHHHHHHH
Q 001999 167 EKHLSSGGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEIILERLKVNAKELDNAQRADNI 246 (984)
Q Consensus 167 ~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l 246 (984)
.+.+...-.++..++|..|.||++.|+...+.+.. ..|+....+.+....++.++...+..
T Consensus 10 ~~~l~~~~~~~yl~~G~e~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~------------------ 70 (343)
T 1jr3_D 10 RAQLNEGLRAAYLLLGNDPLLLQESQDAVRQVAAA-QGFEEHHTFSIDPNTDWNAIFSLCQA------------------ 70 (343)
T ss_dssp HHHHHHCCCSEEEEEESCHHHHHHHHHHHHHHHHH-HTCCEEEEEECCTTCCHHHHHHHHHH------------------
T ss_pred HHHHhcCCCcEEEEECCcHHHHHHHHHHHHHHHHh-CCCCeeEEEEecCCCCHHHHHHHhcC------------------
Confidence 33343345678999999999999999984443321 34543222234444555544433211
Q ss_pred HHHHcCCcEEEEEECCCC-c--cchhhh--ccccCCCCcEEEEEcCC-------ccccc---cCCceEEccCCChHHHHH
Q 001999 247 SKELKDKRYVLFLDGVSS-E--INFKEI--GIHDDHGRGKVVFACRS-------REFCW---QADDVIHVERLSPREAKK 311 (984)
Q Consensus 247 ~~~L~~kr~LlVlDdv~~-~--~~~~~~--~~~~~~~gs~ilvTTR~-------~~v~~---~~~~~~~l~~L~~~~~~~ 311 (984)
.-+-+++-++|+|++.. . ..++.+ .+..-..++.+|++|.. ..+.. .....++..+++.++-..
T Consensus 71 -~plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~ 149 (343)
T 1jr3_D 71 -MSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPR 149 (343)
T ss_dssp -HHHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHH
T ss_pred -cCCccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHH
Confidence 11346778899999865 2 333333 12223346777766543 12222 556789999999999988
Q ss_pred HHHHHhCCCCCCCcchHHHHHHHHHHcCCCchHHHHH
Q 001999 312 LFWEVVGVNLKKNPDIEQEADSIVEECGGMPYMLKLI 348 (984)
Q Consensus 312 Lf~~~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~~ 348 (984)
...+.+.... ..--.+.+..+++.++|.+.++...
T Consensus 150 ~l~~~~~~~g--~~i~~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 150 WVAARAKQLN--LELDDAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp HHHHHHHHTT--CEECHHHHHHHHHSSTTCHHHHHHH
T ss_pred HHHHHHHHcC--CCCCHHHHHHHHHHhchHHHHHHHH
Confidence 8877764331 1112457888999999988776553
No 251
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.36 E-value=0.12 Score=54.17 Aligned_cols=82 Identities=13% Similarity=0.197 Sum_probs=52.9
Q ss_pred EEEEEcCCCChHHHHHHHhhhhcccCCC--CCeEEEEEeCCCCCHHHHHHHHHHHhccCcccc-----ch-HHHHHHHHH
Q 001999 177 KICICGPLGVGKTTIMENSHDSVGESGR--FDIIFWVNVNTDGNISDIQEIILERLKVNAKEL-----DN-AQRADNISK 248 (984)
Q Consensus 177 vi~I~G~gGiGKTtLa~~~~~~~~~~~~--F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~-----~~-~~~~~~l~~ 248 (984)
++-|.|++|+||||||.+...... +. =..++||+....++.. .+++++.+.+.. .. ++..-.+.+
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~--~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~ 102 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYM--RQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVN 102 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHH--HHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH--hcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHH
Confidence 789999999999999998433332 21 2468899988888764 266676554321 11 333122333
Q ss_pred HH----cCCcEEEEEECCCCc
Q 001999 249 EL----KDKRYVLFLDGVSSE 265 (984)
Q Consensus 249 ~L----~~kr~LlVlDdv~~~ 265 (984)
.+ .++.-+||+|-|...
T Consensus 103 ~l~~i~~~~~~lvVIDSI~aL 123 (333)
T 3io5_A 103 QLDAIERGEKVVVFIDSLGNL 123 (333)
T ss_dssp HHHTCCTTCCEEEEEECSTTC
T ss_pred HHHHhhccCceEEEEeccccc
Confidence 33 356789999998653
No 252
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=94.30 E-value=0.04 Score=57.44 Aligned_cols=60 Identities=17% Similarity=0.102 Sum_probs=38.5
Q ss_pred CCCCchHHHHHHHHHHhcc--CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCC
Q 001999 154 SKFPSHKEYVETLEKHLSS--GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNT 215 (984)
Q Consensus 154 ~~~vgr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~ 215 (984)
..++|.+..+.++.+.+.. .....+.|+|..|+|||++|+...+... ..-...+.++.+.
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~--~~~~~~~~v~~~~ 67 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS--RWQGPFISLNCAA 67 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST--TTTSCEEEEEGGG
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC--ccCCCeEEEecCC
Confidence 4578999888888766643 2335677999999999999999666543 2212344555554
No 253
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=94.23 E-value=0.097 Score=63.68 Aligned_cols=47 Identities=21% Similarity=0.357 Sum_probs=36.7
Q ss_pred CCCCchHHHHHHHHHHhcc---------CCccEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 154 SKFPSHKEYVETLEKHLSS---------GGLKKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 154 ~~~vgr~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
..++|.+..++.+...+.. .....+.++|++|+|||++|+...+...
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~ 513 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhc
Confidence 4578999999888777653 1234789999999999999999766653
No 254
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=94.21 E-value=0.11 Score=56.26 Aligned_cols=84 Identities=17% Similarity=0.203 Sum_probs=52.3
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHHHHHhccCccc-----c-chHHHHHHHH
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEIILERLKVNAKE-----L-DNAQRADNIS 247 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~-----~-~~~~~~~~l~ 247 (984)
.-.++.|+|.+|+||||||.+....+. ..=..++|++....++.. .++.++...+. . +.++....+.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~--~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~ 132 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQ--AAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 132 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 567999999999999999999443332 111358899988777753 24455543221 1 1134444444
Q ss_pred HHHc-CCcEEEEEECCCC
Q 001999 248 KELK-DKRYVLFLDGVSS 264 (984)
Q Consensus 248 ~~L~-~kr~LlVlDdv~~ 264 (984)
...+ .+.-+||+|.+-.
T Consensus 133 ~l~~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 133 MLVRSGALDIIVIDSVAA 150 (349)
T ss_dssp HHHTTTCCSEEEEECGGG
T ss_pred HHHhcCCCCEEEEcChHh
Confidence 4443 3567999999753
No 255
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=94.21 E-value=0.1 Score=57.47 Aligned_cols=124 Identities=11% Similarity=0.089 Sum_probs=74.7
Q ss_pred CCcCceeEEEecCcccCCCcchHhhcCCCccEEeccCCCCccCC-cchhcccccCeEecCCCcccccCch-hhhccCCCc
Q 001999 517 PNCCEILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTSIRCLP-PSISRLINLNALFLRSCSLLFQLPK-EIRYLQKLE 594 (984)
Q Consensus 517 ~~~~~L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~c~~l~~lp~-~i~~L~~L~ 594 (984)
..+.+|+.+.+..+ +..++...|.++..|+.+.+..+ ++.+. ..+.++.+|+.+.+.. .+..++. .+.++.+|+
T Consensus 214 ~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~--~i~~i~~~aF~~c~~L~ 289 (379)
T 4h09_A 214 SYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA--KVKTVPYLLCSGCSNLT 289 (379)
T ss_dssp TTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC--CCSEECTTTTTTCTTCC
T ss_pred ccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc--cceeccccccccccccc
Confidence 44556666655432 45555555677777777777654 55553 3456677777777754 2444443 356677777
Q ss_pred EEEecCccccccchh-hhccCCCCeeecccccccCccccCCCCCCcccchhhhhccccccceee
Q 001999 595 ILDVRHTRIQCLPSE-IGQLIKLKCLRVSWVENVGNHTHAGAWPGEMISSNIISKLCLLEELII 657 (984)
Q Consensus 595 ~L~l~~~~l~~lp~~-~~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ip~~~l~~L~~L~~L~l 657 (984)
.+.+..+.++.++.. +..+.+|+.+.+. .. ++ .+....+.+|++|+++.+
T Consensus 290 ~i~l~~~~i~~I~~~aF~~c~~L~~i~lp-----~~--l~------~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 290 KVVMDNSAIETLEPRVFMDCVKLSSVTLP-----TA--LK------TIQVYAFKNCKALSTISY 340 (379)
T ss_dssp EEEECCTTCCEECTTTTTTCTTCCEEECC-----TT--CC------EECTTTTTTCTTCCCCCC
T ss_pred cccccccccceehhhhhcCCCCCCEEEcC-----cc--cc------EEHHHHhhCCCCCCEEEE
Confidence 777777777766543 6677777777765 21 22 344455666666666654
No 256
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=94.17 E-value=0.11 Score=56.26 Aligned_cols=83 Identities=17% Similarity=0.135 Sum_probs=51.2
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHHHHHhccCcccc------chHHHHHHHH
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEIILERLKVNAKEL------DNAQRADNIS 247 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~------~~~~~~~~l~ 247 (984)
.-.++.|.|.+|+||||||.+....+. ..=..++|++....++... ++.++.+.+.. +.++....+.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~--~~g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~~ 134 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 134 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHHH
Confidence 567999999999999999998443332 1113588999888777542 44454432211 1133333333
Q ss_pred HHH-cCCcEEEEEECCC
Q 001999 248 KEL-KDKRYVLFLDGVS 263 (984)
Q Consensus 248 ~~L-~~kr~LlVlDdv~ 263 (984)
... ..+.-+||+|.+.
T Consensus 135 ~l~~~~~~~lVVIDsl~ 151 (356)
T 1u94_A 135 ALARSGAVDVIVVDSVA 151 (356)
T ss_dssp HHHHHTCCSEEEEECGG
T ss_pred HHHhccCCCEEEEcCHH
Confidence 333 2455689999875
No 257
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.16 E-value=0.12 Score=55.40 Aligned_cols=89 Identities=18% Similarity=0.277 Sum_probs=55.1
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhhc--cc----------CCCC--CeEEEEEeCCCCCHHHHHHHHHHHhccCcc----
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDSV--GE----------SGRF--DIIFWVNVNTDGNISDIQEIILERLKVNAK---- 235 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~~--~~----------~~~F--~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~---- 235 (984)
.-.++.|+|.+|+||||||.+....+ .. .... ..++|++....++..++.+. ++.++.+..
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~-~~~~g~~~~~~~~ 175 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQM-AEHAGIDGQTVLD 175 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHH-HHHHTCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHH-HHHcCCCHHHHhc
Confidence 56799999999999999999843322 10 0111 47889998888887776643 455544321
Q ss_pred -----ccch-H---HHHHHHHHHHcC--CcEEEEEECCC
Q 001999 236 -----ELDN-A---QRADNISKELKD--KRYVLFLDGVS 263 (984)
Q Consensus 236 -----~~~~-~---~~~~~l~~~L~~--kr~LlVlDdv~ 263 (984)
.... + +....+.+.++. +.-+||+|.+.
T Consensus 176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 214 (322)
T 2i1q_A 176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLT 214 (322)
T ss_dssp TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSS
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcH
Confidence 1111 2 234445555543 45688888875
No 258
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=94.08 E-value=0.15 Score=56.84 Aligned_cols=97 Identities=19% Similarity=0.232 Sum_probs=63.1
Q ss_pred HHHHhcc-CCccEEEEEcCCCChHHHHHHHhhhhc-ccCCCCCeEEEEEeCCCCC-HHHHHHHHHHHhccC---------
Q 001999 166 LEKHLSS-GGLKKICICGPLGVGKTTIMENSHDSV-GESGRFDIIFWVNVNTDGN-ISDIQEIILERLKVN--------- 233 (984)
Q Consensus 166 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~~~~~~-~~~~~F~~~~wv~vs~~~~-~~~i~~~i~~~l~~~--------- 233 (984)
.++.|.. .+-.-++|+|..|+|||+|+++....+ + .+-+..+++-+.+... +.++.+++.+.=...
T Consensus 155 vID~l~pigkGqr~gIfgg~GvGKT~L~~~l~~~~a~--~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rt 232 (498)
T 1fx0_B 155 VVNLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAK--AHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKV 232 (498)
T ss_dssp THHHHSCCCTTCCEEEEECSSSSHHHHHHHHHHHTTT--TCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCE
T ss_pred EeeeecccccCCeEEeecCCCCCchHHHHHHHHHHHh--hCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccce
Confidence 4455554 556788999999999999999955443 3 4457888998888764 566777776542111
Q ss_pred ------ccccch-----HHHHHHHHHHHc---CCcEEEEEECCCC
Q 001999 234 ------AKELDN-----AQRADNISKELK---DKRYVLFLDGVSS 264 (984)
Q Consensus 234 ------~~~~~~-----~~~~~~l~~~L~---~kr~LlVlDdv~~ 264 (984)
.+.... ....-.+.++++ |+.+||++||+-.
T Consensus 233 vvV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~DsitR 277 (498)
T 1fx0_B 233 ALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFR 277 (498)
T ss_dssp EEEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 011101 233344556664 5899999999854
No 259
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.07 E-value=0.05 Score=58.01 Aligned_cols=40 Identities=15% Similarity=0.301 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHhccC---CccEEEEEcCCCChHHHHHHHhhhh
Q 001999 159 HKEYVETLEKHLSSG---GLKKICICGPLGVGKTTIMENSHDS 198 (984)
Q Consensus 159 r~~~~~~l~~~L~~~---~~~vi~I~G~gGiGKTtLa~~~~~~ 198 (984)
+....+.+.+++... ....+.|+|+.|+|||+||+.....
T Consensus 133 ~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 133 RMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp HHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 344555555666541 2578899999999999999994443
No 260
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.02 E-value=0.23 Score=50.16 Aligned_cols=56 Identities=16% Similarity=0.184 Sum_probs=35.1
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhhccc---CC-CCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDSVGE---SG-RFDIIFWVNVNTDGNISDIQEIILERL 230 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~---~~-~F~~~~wv~vs~~~~~~~i~~~i~~~l 230 (984)
.-.+++|+|+.|+|||||++.....+.. .. .-...+|+.-...+.... ...+.+..
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~-i~~~~~~~ 83 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNR 83 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHH-HHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHH-HHHHHHHc
Confidence 5579999999999999999994432210 01 234688887655444433 23344443
No 261
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.99 E-value=0.34 Score=49.82 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=21.0
Q ss_pred CCccEEEEEcCCCChHHHHHHHhh
Q 001999 173 GGLKKICICGPLGVGKTTIMENSH 196 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~ 196 (984)
..-.+++|+|+.|.|||||.+...
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~ 62 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIIS 62 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHh
Confidence 456799999999999999999843
No 262
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=93.98 E-value=0.052 Score=66.88 Aligned_cols=45 Identities=18% Similarity=0.381 Sum_probs=35.6
Q ss_pred CCCchHHHHHHHHHHhccC---------CccEEEEEcCCCChHHHHHHHhhhhc
Q 001999 155 KFPSHKEYVETLEKHLSSG---------GLKKICICGPLGVGKTTIMENSHDSV 199 (984)
Q Consensus 155 ~~vgr~~~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~~~~~~ 199 (984)
.++|.+..++.+...+... ....+.|+|+.|+|||++|+...+..
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4799999888887776431 13578999999999999999966555
No 263
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=93.95 E-value=0.11 Score=50.59 Aligned_cols=112 Identities=16% Similarity=0.132 Sum_probs=56.1
Q ss_pred cEEEEEcCCCChHHHHHHH-hhhhcccCCCCCeEEEEEeCCC---CCHHHHHHHHHHH---hccC--ccccc---h----
Q 001999 176 KKICICGPLGVGKTTIMEN-SHDSVGESGRFDIIFWVNVNTD---GNISDIQEIILER---LKVN--AKELD---N---- 239 (984)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~-~~~~~~~~~~F~~~~wv~vs~~---~~~~~i~~~i~~~---l~~~--~~~~~---~---- 239 (984)
..|-|++..|.||||.|-. ....+. ..+ .+.++...+. .....+++.+.-. .+.. ..... +
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g--~G~-rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a 105 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVG--HGK-NVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAAC 105 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHH--TTC-CEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHH--CCC-eEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHH
Confidence 4566666677999999988 333333 333 3444443332 2333344333100 0000 00000 0
Q ss_pred HHHHHHHHHHHcCCc-EEEEEECCCCc-----cchhhh--ccccCCCCcEEEEEcCCcc
Q 001999 240 AQRADNISKELKDKR-YVLFLDGVSSE-----INFKEI--GIHDDHGRGKVVFACRSRE 290 (984)
Q Consensus 240 ~~~~~~l~~~L~~kr-~LlVlDdv~~~-----~~~~~~--~~~~~~~gs~ilvTTR~~~ 290 (984)
.......++.+...+ =|||||++-.. ...+++ .+........||+|+|...
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap 164 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCH 164 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCC
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCc
Confidence 223344555565544 59999998332 222222 1224556779999999863
No 264
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=93.94 E-value=0.81 Score=50.69 Aligned_cols=26 Identities=27% Similarity=0.086 Sum_probs=21.6
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhhc
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDSV 199 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 199 (984)
...+|.++|.+|+||||++.......
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999844444
No 265
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=93.93 E-value=0.042 Score=54.87 Aligned_cols=39 Identities=18% Similarity=0.344 Sum_probs=29.5
Q ss_pred HHHHHHHHHhcc--CCccEEEEEcCCCChHHHHHHHhhhhc
Q 001999 161 EYVETLEKHLSS--GGLKKICICGPLGVGKTTIMENSHDSV 199 (984)
Q Consensus 161 ~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~~~~~~ 199 (984)
+..++|.+.+.. ....+|+|+|+.|.|||||++......
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 455566666653 467899999999999999999954444
No 266
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=93.92 E-value=0.15 Score=55.49 Aligned_cols=84 Identities=18% Similarity=0.129 Sum_probs=53.2
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHHHHHhccCccc------cchHHHHHHHH
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEIILERLKVNAKE------LDNAQRADNIS 247 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~------~~~~~~~~~l~ 247 (984)
...++.|+|.+|+||||||.+....+. ..=..++|++....++.. .++.++.+... .+.++....+.
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~--~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~ 145 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQ--KAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIME 145 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHH--HCCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHH
Confidence 457899999999999999998433332 112368899988877754 24445443221 11145555555
Q ss_pred HHHc-CCcEEEEEECCCC
Q 001999 248 KELK-DKRYVLFLDGVSS 264 (984)
Q Consensus 248 ~~L~-~kr~LlVlDdv~~ 264 (984)
...+ ++.-+||+|.+..
T Consensus 146 ~l~~~~~~~lVVIDsl~~ 163 (366)
T 1xp8_A 146 LLVRSGAIDVVVVDSVAA 163 (366)
T ss_dssp HHHTTTCCSEEEEECTTT
T ss_pred HHHhcCCCCEEEEeChHH
Confidence 5554 3456999999853
No 267
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=93.92 E-value=0.13 Score=54.37 Aligned_cols=26 Identities=31% Similarity=0.358 Sum_probs=21.5
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhhc
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDSV 199 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 199 (984)
...+++++|.+|+||||++.......
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999944433
No 268
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.87 E-value=0.15 Score=56.78 Aligned_cols=97 Identities=16% Similarity=0.202 Sum_probs=52.8
Q ss_pred HHHhcc-CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCC-HHHHHHHHHHHhcc--------Cccc
Q 001999 167 EKHLSS-GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGN-ISDIQEIILERLKV--------NAKE 236 (984)
Q Consensus 167 ~~~L~~-~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~-~~~i~~~i~~~l~~--------~~~~ 236 (984)
++.|.. .+-..++|+|..|+|||||++........ ..-+..+++.+.+..+ ..++..++.+.-.. ...+
T Consensus 142 ID~L~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~-~~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d 220 (473)
T 1sky_E 142 VDLLAPYIKGGKIGLFGGAGVGKTVLIQELIHNIAQ-EHGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNE 220 (473)
T ss_dssp HHHHSCEETTCEEEEECCSSSCHHHHHHHHHHHHHH-HTCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTS
T ss_pred HHHHhhhccCCEEEEECCCCCCccHHHHHHHhhhhh-ccCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCC
Confidence 444443 23446899999999999999984333320 1224456777776543 34455445432100 0111
Q ss_pred cch-H----HHHHHHHHHH---cCCcEEEEEECCCC
Q 001999 237 LDN-A----QRADNISKEL---KDKRYVLFLDGVSS 264 (984)
Q Consensus 237 ~~~-~----~~~~~l~~~L---~~kr~LlVlDdv~~ 264 (984)
... . ...-.+.+++ +++++||++||+-.
T Consensus 221 ~pg~r~~~~~~~ltiAEyFrd~~G~~VLl~~D~itR 256 (473)
T 1sky_E 221 PPGARMRVALTGLTMAEYFRDEQGQDGLLFIDNIFR 256 (473)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEECTHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 111 1 1112333433 58999999999943
No 269
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=93.85 E-value=0.31 Score=51.54 Aligned_cols=87 Identities=17% Similarity=0.138 Sum_probs=45.6
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHH--HHHHHHHHhccCcccc---ch--HHHHHHH
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISD--IQEIILERLKVNAKEL---DN--AQRADNI 246 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~--i~~~i~~~l~~~~~~~---~~--~~~~~~l 246 (984)
...+|+|+|.+|+||||++......... .. ..+.++.. +.+.... -+...++..+...... .+ .-....+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~-~g-~kV~lv~~-D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al 179 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVD-EG-KSVVLAAA-DTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAV 179 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHH-TT-CCEEEEEE-CTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHh-cC-CEEEEEcc-ccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 4579999999999999999995444431 11 12344432 3333221 1233444443322111 01 1122345
Q ss_pred HHHHcCCcEEEEEECCC
Q 001999 247 SKELKDKRYVLFLDGVS 263 (984)
Q Consensus 247 ~~~L~~kr~LlVlDdv~ 263 (984)
...+..+.-++|+|-.-
T Consensus 180 ~~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 180 AHALARNKDVVIIDTAG 196 (306)
T ss_dssp HHHHHTTCSEEEEEECC
T ss_pred HHHHhcCCCEEEEECCC
Confidence 55555555578888653
No 270
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=93.80 E-value=0.54 Score=47.41 Aligned_cols=27 Identities=19% Similarity=0.331 Sum_probs=22.2
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhc
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSV 199 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~ 199 (984)
..-.+++|+|+.|.|||||.+......
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456799999999999999999954443
No 271
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=93.65 E-value=0.034 Score=53.86 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=22.1
Q ss_pred cEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 176 KKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
.+|.|.|++|+||||+|+...++..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5799999999999999999777664
No 272
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=93.51 E-value=0.031 Score=59.58 Aligned_cols=22 Identities=36% Similarity=0.561 Sum_probs=19.9
Q ss_pred CCccEEEEEcCCCChHHHHHHH
Q 001999 173 GGLKKICICGPLGVGKTTIMEN 194 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~ 194 (984)
+..+||+|.|.|||||||.|..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavN 67 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSN 67 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHH
T ss_pred CCceEEEEECCCccCHHHHHHH
Confidence 4679999999999999999988
No 273
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.49 E-value=0.34 Score=53.70 Aligned_cols=26 Identities=23% Similarity=0.233 Sum_probs=21.5
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhhc
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDSV 199 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 199 (984)
...||.++|.+|+||||++.......
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 46899999999999999998844433
No 274
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.49 E-value=0.18 Score=49.86 Aligned_cols=26 Identities=27% Similarity=0.284 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhhc
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDSV 199 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 199 (984)
...+|+|.|+.|+||||+|+...+..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999866554
No 275
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.35 E-value=0.12 Score=50.48 Aligned_cols=26 Identities=23% Similarity=0.262 Sum_probs=22.2
Q ss_pred ccEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 175 LKKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
..+|.|.|+.|+||||+|+...+...
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999666553
No 276
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.33 E-value=0.037 Score=53.28 Aligned_cols=23 Identities=30% Similarity=0.310 Sum_probs=20.2
Q ss_pred cEEEEEcCCCChHHHHHHHhhhhc
Q 001999 176 KKICICGPLGVGKTTIMENSHDSV 199 (984)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~~~~~~ 199 (984)
.+|.|.|++|+||||+|+.. +..
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHC
Confidence 47999999999999999998 543
No 277
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=93.30 E-value=0.24 Score=53.66 Aligned_cols=92 Identities=16% Similarity=0.264 Sum_probs=53.5
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhccc---CCCC-CeEEEEEeCCCCCHHHHHHHHHHHhccCcc----------ccc
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSVGE---SGRF-DIIFWVNVNTDGNISDIQEIILERLKVNAK----------ELD 238 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~---~~~F-~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~----------~~~ 238 (984)
..-.++.|+|+.|+|||||++.....+.. .... ..++|++....+...++ ..+++..+.... ...
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~ 207 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFN 207 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCC
Confidence 45689999999999999999994443320 0111 24589987666554443 334444332210 000
Q ss_pred -h--HHHHHHHHHHHc------CCcEEEEEECCCCc
Q 001999 239 -N--AQRADNISKELK------DKRYVLFLDGVSSE 265 (984)
Q Consensus 239 -~--~~~~~~l~~~L~------~kr~LlVlDdv~~~ 265 (984)
. .++...+...+. .+.-+||+|.+-..
T Consensus 208 ~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ 243 (349)
T 1pzn_A 208 SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSH 243 (349)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTT
T ss_pred hHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHh
Confidence 1 233444444454 46779999988653
No 278
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=93.27 E-value=0.042 Score=52.79 Aligned_cols=25 Identities=20% Similarity=0.178 Sum_probs=21.7
Q ss_pred cEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 176 KKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
.+|.|.|+.|+||||+|+...++..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999766654
No 279
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.20 E-value=0.046 Score=54.11 Aligned_cols=27 Identities=26% Similarity=0.448 Sum_probs=23.4
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
..++|.|+|+.|+||||+|+...+...
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 457899999999999999999776664
No 280
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=93.19 E-value=0.3 Score=53.73 Aligned_cols=90 Identities=11% Similarity=0.139 Sum_probs=52.3
Q ss_pred CCccEEEEEcCCCChHHHHHHHhh--hhccc--CCCCCeEEEEEeCCCCCHHHHHHHHHHHhccCcc---------ccch
Q 001999 173 GGLKKICICGPLGVGKTTIMENSH--DSVGE--SGRFDIIFWVNVNTDGNISDIQEIILERLKVNAK---------ELDN 239 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~--~~~~~--~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~---------~~~~ 239 (984)
..-.++.|+|.+|+|||||+.... -.... ...-..++|++....++..++. .+++.++.... ....
T Consensus 176 ~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~-~~a~~~gl~~~~vleni~~~~~~~ 254 (400)
T 3lda_A 176 ETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLV-SIAQRFGLDPDDALNNVAYARAYN 254 (400)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHH-HHHHHcCCChHhHhhcEEEeccCC
Confidence 356799999999999999999632 11110 0123568899887777666543 35666554321 0011
Q ss_pred ----HHHHHHHHHHH-cCCcEEEEEECCC
Q 001999 240 ----AQRADNISKEL-KDKRYVLFLDGVS 263 (984)
Q Consensus 240 ----~~~~~~l~~~L-~~kr~LlVlDdv~ 263 (984)
.+....+.+.+ ..+.-+||+|.+-
T Consensus 255 ~~~~~~~l~~~~~~l~~~~~~llVIDs~t 283 (400)
T 3lda_A 255 ADHQLRLLDAAAQMMSESRFSLIVVDSVM 283 (400)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEEETGG
T ss_pred hHHHHHHHHHHHHHHHhcCCceEEecchh
Confidence 12222333333 2456788888864
No 281
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.05 E-value=0.26 Score=54.60 Aligned_cols=27 Identities=22% Similarity=0.106 Sum_probs=22.0
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
...+|+|+|++|+||||++........
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~ 123 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYK 123 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357999999999999999999544443
No 282
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=92.87 E-value=0.62 Score=49.72 Aligned_cols=27 Identities=26% Similarity=0.209 Sum_probs=22.3
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhc
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSV 199 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~ 199 (984)
....+++|+|+.|+||||+++......
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456899999999999999999944433
No 283
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=92.85 E-value=0.47 Score=56.82 Aligned_cols=92 Identities=16% Similarity=0.247 Sum_probs=56.8
Q ss_pred CCCCCchHHHHHHHHHHhcc-------------CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCH
Q 001999 153 ASKFPSHKEYVETLEKHLSS-------------GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNI 219 (984)
Q Consensus 153 ~~~~vgr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~ 219 (984)
..++.|.++.+++|.+.+.- ...+-|.++|++|.|||.+|++...... .. ++.++.
T Consensus 476 w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~--~~-----f~~v~~---- 544 (806)
T 3cf2_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--AN-----FISIKG---- 544 (806)
T ss_dssp STTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTT--CE-----EEECCH----
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhC--Cc-----eEEecc----
Confidence 35567888888887766532 2345678999999999999999877765 32 233321
Q ss_pred HHHHHHHHHHhccCccccchHHHHHHHHHHH-cCCcEEEEEECCCC
Q 001999 220 SDIQEIILERLKVNAKELDNAQRADNISKEL-KDKRYVLFLDGVSS 264 (984)
Q Consensus 220 ~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~ 264 (984)
.++ +. .....+ +.....+.+.- +..+++|++|++..
T Consensus 545 ~~l----~s----~~vGes-e~~vr~lF~~Ar~~~P~IifiDEiDs 581 (806)
T 3cf2_A 545 PEL----LT----MWFGES-EANVREIFDKARQAAPCVLFFDELDS 581 (806)
T ss_dssp HHH----HT----TTCSSC-HHHHHHHHHHHHTTCSEEEECSCGGG
T ss_pred chh----hc----cccchH-HHHHHHHHHHHHHcCCceeechhhhH
Confidence 111 11 111111 33344444444 45789999999854
No 284
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=92.84 E-value=0.053 Score=52.84 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=22.5
Q ss_pred ccEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 175 LKKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
.+.|.|+|+.|+||||+|+...+...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46789999999999999999777664
No 285
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=92.75 E-value=0.052 Score=52.76 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=20.5
Q ss_pred ccEEEEEcCCCChHHHHHHHhhhh
Q 001999 175 LKKICICGPLGVGKTTIMENSHDS 198 (984)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~~~~~ 198 (984)
.++++|+|+.|+|||||++.....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 468999999999999999995443
No 286
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=92.75 E-value=1.2 Score=60.47 Aligned_cols=88 Identities=23% Similarity=0.329 Sum_probs=51.0
Q ss_pred HHHHhccCCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHHHHHhccCccccchHHHHHH
Q 001999 166 LEKHLSSGGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEIILERLKVNAKELDNAQRADN 245 (984)
Q Consensus 166 l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~ 245 (984)
+++.+...+ +-+-++|++|+|||++|+..-... ..+ ..+.++.|...+...+++.+-..+.........-
T Consensus 1259 ll~~~l~~~-~~vLL~GPpGtGKT~la~~~l~~~---~~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~----- 1328 (2695)
T 4akg_A 1259 IFYDLLNSK-RGIILCGPPGSGKTMIMNNALRNS---SLY-DVVGINFSKDTTTEHILSALHRHTNYVTTSKGLT----- 1328 (2695)
T ss_dssp HHHHHHHHT-CEEEEECSTTSSHHHHHHHHHHSC---SSC-EEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEE-----
T ss_pred HHHHHHHCC-CeEEEECCCCCCHHHHHHHHHhcC---CCC-ceEEEEeecCCCHHHHHHHHHHHhhhccccCCcc-----
Confidence 444443333 567799999999999997743332 223 3556777877777777666655543211000000
Q ss_pred HHHHHcCCcEEEEEECCC
Q 001999 246 ISKELKDKRYVLFLDGVS 263 (984)
Q Consensus 246 l~~~L~~kr~LlVlDdv~ 263 (984)
..-.-.+++.++.+||+.
T Consensus 1329 ~~P~~~gk~~VlFiDEin 1346 (2695)
T 4akg_A 1329 LLPKSDIKNLVLFCDEIN 1346 (2695)
T ss_dssp EEEBSSSSCEEEEEETTT
T ss_pred ccCCCCCceEEEEecccc
Confidence 000003688999999964
No 287
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=92.74 E-value=0.074 Score=57.47 Aligned_cols=147 Identities=15% Similarity=0.091 Sum_probs=81.8
Q ss_pred CCCCchHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHHHHHhccC
Q 001999 154 SKFPSHKEYVETLEKHLSSGGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEIILERLKVN 233 (984)
Q Consensus 154 ~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~ 233 (984)
..++|+++.++.+...+..+ .-+.++|++|+|||+||+...+... ..| ..+..+......++.. .....
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~~~~--~~~---~~i~~~~~~~~~~l~g----~~~~~ 95 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLAKTMD--LDF---HRIQFTPDLLPSDLIG----TMIYN 95 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHHHTT--CCE---EEEECCTTCCHHHHHE----EEEEE
T ss_pred cceeCcHHHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHHHhC--CCe---EEEecCCCCChhhcCC----ceeec
Confidence 45899999999888877653 4678999999999999999776664 333 2233333333332211 10000
Q ss_pred ccccchHHHHHHHHHHHcC--CcEEEEEECCCCcc--chhhh-------ccc------cCCCCcEEEEEcCCcc------
Q 001999 234 AKELDNAQRADNISKELKD--KRYVLFLDGVSSEI--NFKEI-------GIH------DDHGRGKVVFACRSRE------ 290 (984)
Q Consensus 234 ~~~~~~~~~~~~l~~~L~~--kr~LlVlDdv~~~~--~~~~~-------~~~------~~~~gs~ilvTTR~~~------ 290 (984)
...... ..-.+ ...++++|++.... ....+ .+. .......|+.|+....
T Consensus 96 ~~~~~~--------~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~~~~~~ 167 (331)
T 2r44_A 96 QHKGNF--------EVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQEGTYP 167 (331)
T ss_dssp TTTTEE--------EEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCCSCCCC
T ss_pred CCCCce--------EeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcccCccc
Confidence 000000 00001 13589999987532 11111 000 1233445565655222
Q ss_pred ccc----cCCceEEccCCChHHHHHHHHHHhCC
Q 001999 291 FCW----QADDVIHVERLSPREAKKLFWEVVGV 319 (984)
Q Consensus 291 v~~----~~~~~~~l~~L~~~~~~~Lf~~~~~~ 319 (984)
+.. .....+.+.+.+.++-.+++.+.+..
T Consensus 168 l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 168 LPEAQVDRFMMKIHLTYLDKESELEVMRRVSNM 200 (331)
T ss_dssp CCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCT
T ss_pred CCHHHHhheeEEEEcCCCCHHHHHHHHHhcccc
Confidence 111 23336889999999999998887654
No 288
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=92.67 E-value=0.28 Score=48.97 Aligned_cols=28 Identities=29% Similarity=0.254 Sum_probs=23.8
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
.+.+||.|.|++|+||||.|+...++..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 4678999999999999999999666654
No 289
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=92.65 E-value=0.26 Score=48.44 Aligned_cols=24 Identities=25% Similarity=0.196 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHhhhhcc
Q 001999 177 KICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 177 vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
.|+|-|.-|+||||.++...+..+
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~ 25 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999777665
No 290
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=92.63 E-value=0.033 Score=55.94 Aligned_cols=110 Identities=12% Similarity=-0.000 Sum_probs=58.6
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHHHHHhccCcccc---chHHHHHHHHHHH
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEIILERLKVNAKEL---DNAQRADNISKEL 250 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~---~~~~~~~~l~~~L 250 (984)
...++.|+|..|.||||++.....+... ... .++.+.-.. +.. -...|++.++...... ...+....+.+.+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~-~g~-kVli~~~~~--d~r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~ 85 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEY-ADV-KYLVFKPKI--DTR-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNS 85 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHH-TTC-CEEEEEECC--CGG-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTT
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHh-cCC-EEEEEEecc--Cch-HHHHHHHhcCCCccccccCCHHHHHHHHHHHh
Confidence 4578999999999999999884444431 222 233343222 212 2223444444332211 1134444454444
Q ss_pred cCCcE-EEEEECCCCc--cchhhh-ccccCCCCcEEEEEcCCcc
Q 001999 251 KDKRY-VLFLDGVSSE--INFKEI-GIHDDHGRGKVVFACRSRE 290 (984)
Q Consensus 251 ~~kr~-LlVlDdv~~~--~~~~~~-~~~~~~~gs~ilvTTR~~~ 290 (984)
.+.++ +||+|.+... +..+.+ .+.+ .|-.||+|-+..+
T Consensus 86 ~~~~~dvViIDEaQ~l~~~~ve~l~~L~~--~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 86 FNDETKVIGIDEVQFFDDRICEVANILAE--NGFVVIISGLDKN 127 (223)
T ss_dssp SCTTCCEEEECSGGGSCTHHHHHHHHHHH--TTCEEEEECCSBC
T ss_pred hCCCCCEEEEecCccCcHHHHHHHHHHHh--CCCeEEEEecccc
Confidence 44444 9999998642 222222 1112 3778888887543
No 291
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=92.58 E-value=0.059 Score=52.82 Aligned_cols=25 Identities=32% Similarity=0.421 Sum_probs=21.4
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhh
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDS 198 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~ 198 (984)
...+|+|+|+.|+||||+++.....
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4578999999999999999996544
No 292
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=92.53 E-value=0.7 Score=51.44 Aligned_cols=26 Identities=23% Similarity=0.240 Sum_probs=21.6
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhhc
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDSV 199 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 199 (984)
..++|.++|.+|+||||++.......
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l 124 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFL 124 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999844444
No 293
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=92.50 E-value=0.058 Score=51.90 Aligned_cols=25 Identities=32% Similarity=0.654 Sum_probs=21.8
Q ss_pred cEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 176 KKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
.+|+|+|+.|+||||+++.......
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999776654
No 294
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=92.46 E-value=0.11 Score=56.98 Aligned_cols=45 Identities=22% Similarity=0.288 Sum_probs=36.3
Q ss_pred CCchHHHHHHHHHHhc-------------c--CCccEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 156 FPSHKEYVETLEKHLS-------------S--GGLKKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 156 ~vgr~~~~~~l~~~L~-------------~--~~~~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
++|.+..++.+...+. . .....+.++|++|+|||++|+...+...
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 6899999988887772 1 1346789999999999999999777664
No 295
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.44 E-value=0.095 Score=52.91 Aligned_cols=37 Identities=27% Similarity=0.417 Sum_probs=27.6
Q ss_pred HHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHhhh
Q 001999 161 EYVETLEKHLSSGGLKKICICGPLGVGKTTIMENSHD 197 (984)
Q Consensus 161 ~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~ 197 (984)
+..+.+.+.+......+|+|+|.+|+|||||+.....
T Consensus 24 ~~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~ 60 (226)
T 2hf9_A 24 RLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLID 60 (226)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 3344455555556788999999999999999998433
No 296
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=92.41 E-value=0.56 Score=50.62 Aligned_cols=54 Identities=13% Similarity=0.154 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHcCCcEEEEEECCCCccchhh---h--ccc--cCCCCcEEEEEcCCccccc
Q 001999 240 AQRADNISKELKDKRYVLFLDGVSSEINFKE---I--GIH--DDHGRGKVVFACRSREFCW 293 (984)
Q Consensus 240 ~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~---~--~~~--~~~~gs~ilvTTR~~~v~~ 293 (984)
+...-.|.+.|-.++-+|++|.--...|... + .+. ....|..||++|-+-.++.
T Consensus 168 qkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~ 228 (366)
T 3tui_C 168 QKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVK 228 (366)
T ss_dssp HHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence 3344456778888888999999765433211 1 111 2234778888888766554
No 297
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=92.38 E-value=0.21 Score=55.11 Aligned_cols=97 Identities=8% Similarity=0.012 Sum_probs=57.4
Q ss_pred HHHHhcc-CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCC----eEEEEEeCCCC-CHHHHHHHHHHHh--cc-----
Q 001999 166 LEKHLSS-GGLKKICICGPLGVGKTTIMENSHDSVGESGRFD----IIFWVNVNTDG-NISDIQEIILERL--KV----- 232 (984)
Q Consensus 166 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~----~~~wv~vs~~~-~~~~i~~~i~~~l--~~----- 232 (984)
.++.|.. .+-.-++|+|..|+|||+|+.+..+... .+-+ ..+++-+.+.. .+.++.+++.+.= ..
T Consensus 141 aID~l~pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~~--~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~ 218 (465)
T 3vr4_D 141 AIDHLNTLVRGQKLPVFSGSGLPHKELAAQIARQAT--VLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFM 218 (465)
T ss_dssp HHHTTSCCBTTCBCCEEECTTSCHHHHHHHHHHHCB--CSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEE
T ss_pred EEecccccccCCEEEEeCCCCcChHHHHHHHHHHHH--hccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEE
Confidence 3455544 3445678999999999999988555544 3223 67777777654 3556666655431 10
Q ss_pred -Cccccch-----HHHHHHHHHHHc---CCcEEEEEECCCC
Q 001999 233 -NAKELDN-----AQRADNISKELK---DKRYVLFLDGVSS 264 (984)
Q Consensus 233 -~~~~~~~-----~~~~~~l~~~L~---~kr~LlVlDdv~~ 264 (984)
..+.... ....-.+.++++ |+.+||++||+-.
T Consensus 219 atsd~p~~~r~~a~~~a~tiAEyfrd~~G~~VLl~~DslTr 259 (465)
T 3vr4_D 219 NLANDPAIERIATPRMALTAAEYLAYEKGMHVLVIMTDMTN 259 (465)
T ss_dssp EETTSCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEECHHH
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 0111111 222233555553 7899999999843
No 298
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=92.35 E-value=0.067 Score=51.45 Aligned_cols=21 Identities=29% Similarity=0.518 Sum_probs=19.0
Q ss_pred CccEEEEEcCCCChHHHHHHH
Q 001999 174 GLKKICICGPLGVGKTTIMEN 194 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~ 194 (984)
...+++|+|+.|+|||||++.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 457899999999999999995
No 299
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=92.33 E-value=0.074 Score=52.65 Aligned_cols=27 Identities=22% Similarity=0.192 Sum_probs=23.3
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhc
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSV 199 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~ 199 (984)
....+|+|+|+.|.||||+|+......
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 466899999999999999999966555
No 300
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.19 E-value=0.18 Score=45.73 Aligned_cols=33 Identities=24% Similarity=0.355 Sum_probs=16.1
Q ss_pred CccEEeccCCCCccCCcc-hhcccccCeEecCCC
Q 001999 545 HLQLLDLHDTSIRCLPPS-ISRLINLNALFLRSC 577 (984)
Q Consensus 545 ~Lr~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~c 577 (984)
+|+.|+|++|.|+.+|.. +..+.+|++|+|++|
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 345555555555555332 344555555555543
No 301
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=92.12 E-value=0.13 Score=56.57 Aligned_cols=46 Identities=15% Similarity=0.216 Sum_probs=35.4
Q ss_pred CCCchHHHHHHHHHHhcc------------------------------CCccEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 155 KFPSHKEYVETLEKHLSS------------------------------GGLKKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 155 ~~vgr~~~~~~l~~~L~~------------------------------~~~~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
.++|.++.++.|...+.. .....+.++|++|+|||++|+...+...
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 478988888888776620 1234688999999999999999777664
No 302
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=92.10 E-value=0.14 Score=54.80 Aligned_cols=43 Identities=19% Similarity=0.248 Sum_probs=31.0
Q ss_pred CchHHHHHHHHHHhc----cCCccEEEEEcCCCChHHHHHHHhhhhc
Q 001999 157 PSHKEYVETLEKHLS----SGGLKKICICGPLGVGKTTIMENSHDSV 199 (984)
Q Consensus 157 vgr~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~~~~~~ 199 (984)
++.+...+++++.+. .++...|.|+|+.|+||||+++......
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 455566666666553 3556679999999999999999854443
No 303
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.04 E-value=0.33 Score=47.48 Aligned_cols=23 Identities=26% Similarity=0.216 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHhhhhc
Q 001999 177 KICICGPLGVGKTTIMENSHDSV 199 (984)
Q Consensus 177 vi~I~G~gGiGKTtLa~~~~~~~ 199 (984)
.|+|.|+.|+||||+|+...+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999966655
No 304
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=91.99 E-value=0.11 Score=54.52 Aligned_cols=27 Identities=22% Similarity=0.207 Sum_probs=22.2
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhc
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSV 199 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~ 199 (984)
....+|+|+|..|+||||||+......
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 456799999999999999999844443
No 305
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=91.98 E-value=0.086 Score=52.99 Aligned_cols=41 Identities=27% Similarity=0.456 Sum_probs=30.3
Q ss_pred chHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHhhhh
Q 001999 158 SHKEYVETLEKHLSSGGLKKICICGPLGVGKTTIMENSHDS 198 (984)
Q Consensus 158 gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~ 198 (984)
+.++..+.+.+.+.....++|+|+|.+|+|||||+......
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 13 ENKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred hcHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 34455555555555567889999999999999999984433
No 306
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=91.97 E-value=0.073 Score=51.49 Aligned_cols=22 Identities=32% Similarity=0.244 Sum_probs=19.7
Q ss_pred cEEEEEcCCCChHHHHHHHhhh
Q 001999 176 KKICICGPLGVGKTTIMENSHD 197 (984)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~~~~ 197 (984)
.+|.|.|++|+||||+|+...+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999655
No 307
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=91.88 E-value=0.14 Score=58.13 Aligned_cols=44 Identities=16% Similarity=0.199 Sum_probs=36.6
Q ss_pred CCCchHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 155 KFPSHKEYVETLEKHLSSGGLKKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 155 ~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
.++|+++.++.+...+..+ .-|.++|++|+|||+||+.......
T Consensus 23 ~ivGq~~~i~~l~~al~~~--~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHT--CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred hhHHHHHHHHHHHHHHhcC--CeeEeecCchHHHHHHHHHHHHHHh
Confidence 4899999998888777644 4678999999999999999777664
No 308
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=91.85 E-value=0.06 Score=52.38 Aligned_cols=24 Identities=33% Similarity=0.652 Sum_probs=19.9
Q ss_pred cEEEEEcCCCChHHHHHHHhhhhc
Q 001999 176 KKICICGPLGVGKTTIMENSHDSV 199 (984)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~~~~~~ 199 (984)
+.|.|+|++|+|||||++...+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 468899999999999999854443
No 309
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=91.83 E-value=0.69 Score=51.83 Aligned_cols=42 Identities=19% Similarity=0.128 Sum_probs=28.5
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCC
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGN 218 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~ 218 (984)
...+|+|+|..|+|||||++.....++ .. ...+++.-.+.+.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~--~~-~G~V~l~g~D~~r 333 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFE--QQ-GKSVMLAAGDTFR 333 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHH--HT-TCCEEEECCCTTC
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhh--hc-CCeEEEecCcccc
Confidence 467999999999999999999554443 11 2345554444444
No 310
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=91.82 E-value=0.086 Score=52.27 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=20.9
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhh
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDS 198 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~ 198 (984)
...+++|+|+.|+|||||++.....
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 3468999999999999999995443
No 311
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=91.80 E-value=0.084 Score=52.25 Aligned_cols=27 Identities=30% Similarity=0.436 Sum_probs=22.7
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhc
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSV 199 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~ 199 (984)
....+|+|+|+.|+||||+++......
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 456799999999999999999966554
No 312
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=91.77 E-value=0.11 Score=51.68 Aligned_cols=28 Identities=32% Similarity=0.380 Sum_probs=23.0
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
....+|+|+|+.|+|||||++.......
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3467999999999999999999655543
No 313
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=91.74 E-value=0.074 Score=52.71 Aligned_cols=26 Identities=27% Similarity=0.446 Sum_probs=22.1
Q ss_pred ccEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 175 LKKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
..+|+|.|+.|+||||+|+...+...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999666553
No 314
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=91.65 E-value=0.2 Score=45.45 Aligned_cols=34 Identities=21% Similarity=0.365 Sum_probs=15.5
Q ss_pred eeEEEecCcccCCCcchHhhcCCCccEEeccCCC
Q 001999 522 ILTLIVEGRRLEKLPMSFFEYMCHLQLLDLHDTS 555 (984)
Q Consensus 522 L~~L~l~~~~l~~l~~~~~~~l~~Lr~L~L~~~~ 555 (984)
|+.|+|++|.++.++...|..+++|++|+|++|.
T Consensus 33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 4444444444444444444444444444444443
No 315
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=91.63 E-value=0.089 Score=50.98 Aligned_cols=26 Identities=38% Similarity=0.551 Sum_probs=22.1
Q ss_pred ccEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 175 LKKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
.++|.|+|++|+||||+|+...+...
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 46789999999999999999766654
No 316
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=91.61 E-value=0.15 Score=48.61 Aligned_cols=26 Identities=27% Similarity=0.286 Sum_probs=21.5
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhhc
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDSV 199 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 199 (984)
..++++|+|..|+|||||+.......
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhh
Confidence 46799999999999999999955544
No 317
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=91.58 E-value=0.086 Score=51.62 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=21.5
Q ss_pred cEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 176 KKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
.+|.|.|+.|+||||+|+...+...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999666654
No 318
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=91.52 E-value=0.096 Score=50.06 Aligned_cols=27 Identities=15% Similarity=0.384 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
...+|+|.|+.|+||||+|+...++..
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhC
Confidence 357899999999999999999777654
No 319
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=91.51 E-value=0.076 Score=51.84 Aligned_cols=24 Identities=33% Similarity=0.652 Sum_probs=20.2
Q ss_pred cEEEEEcCCCChHHHHHHHhhhhc
Q 001999 176 KKICICGPLGVGKTTIMENSHDSV 199 (984)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~~~~~~ 199 (984)
++++|+|+.|+|||||++......
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 579999999999999999954443
No 320
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=91.45 E-value=0.097 Score=51.81 Aligned_cols=24 Identities=42% Similarity=0.700 Sum_probs=21.3
Q ss_pred EEEEEcCCCChHHHHHHHhhhhcc
Q 001999 177 KICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 177 vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
.|+|.|+.|+||||+|+...+...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999777664
No 321
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=91.44 E-value=0.095 Score=51.22 Aligned_cols=25 Identities=32% Similarity=0.442 Sum_probs=21.4
Q ss_pred cEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 176 KKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
.+|.|.|+.|+||||+|+...++..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999666543
No 322
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=91.43 E-value=1 Score=47.98 Aligned_cols=52 Identities=10% Similarity=0.086 Sum_probs=37.2
Q ss_pred CCccEEEEEcCCCChHHHHHHHhh-hhcccCCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 001999 173 GGLKKICICGPLGVGKTTIMENSH-DSVGESGRFDIIFWVNVNTDGNISDIQEIILER 229 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~-~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~ 229 (984)
....++.|.|.+|+||||+|.+.. .-.. .. ..++|++.. .+...+...+...
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a~--~g-~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNMSD--ND-DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHHT--TT-CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHH--cC-CeEEEEECC--CCHHHHHHHHHHH
Confidence 355799999999999999999943 3333 22 567777655 4677777777654
No 323
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=91.34 E-value=0.1 Score=51.86 Aligned_cols=26 Identities=31% Similarity=0.724 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhhc
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDSV 199 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 199 (984)
...+|.|+|++|+||||+++...+..
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 45789999999999999999965554
No 324
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=91.33 E-value=0.94 Score=47.64 Aligned_cols=25 Identities=28% Similarity=0.182 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCChHHHHHHHhhhhc
Q 001999 175 LKKICICGPLGVGKTTIMENSHDSV 199 (984)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~~~~~~ 199 (984)
..+|+++|.+|+||||++.......
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999999844433
No 325
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=91.29 E-value=0.24 Score=49.24 Aligned_cols=26 Identities=23% Similarity=0.120 Sum_probs=22.5
Q ss_pred ccEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 175 LKKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
..+|.|.|+.|+||||+|+...+...
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 35899999999999999999776665
No 326
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=91.29 E-value=0.092 Score=50.61 Aligned_cols=25 Identities=28% Similarity=0.469 Sum_probs=21.6
Q ss_pred cEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 176 KKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
+.|.|.|+.|+||||+|+...+...
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999776654
No 327
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=91.28 E-value=0.096 Score=50.43 Aligned_cols=25 Identities=16% Similarity=0.296 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCChHHHHHHHhhhhc
Q 001999 175 LKKICICGPLGVGKTTIMENSHDSV 199 (984)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~~~~~~ 199 (984)
..+|+|+|+.|+||||+++......
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999965554
No 328
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=91.26 E-value=0.11 Score=51.62 Aligned_cols=26 Identities=31% Similarity=0.423 Sum_probs=21.6
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhhc
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDSV 199 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 199 (984)
...+|+|+|+.|+||||+++......
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 34689999999999999999955444
No 329
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=91.23 E-value=0.1 Score=52.13 Aligned_cols=26 Identities=27% Similarity=0.254 Sum_probs=21.7
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhhc
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDSV 199 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 199 (984)
...+|+|+|+.|+|||||++......
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999955443
No 330
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=91.22 E-value=0.085 Score=52.10 Aligned_cols=23 Identities=26% Similarity=0.648 Sum_probs=19.4
Q ss_pred ccEEEEEcCCCChHHHHHHHhhh
Q 001999 175 LKKICICGPLGVGKTTIMENSHD 197 (984)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~~~~ 197 (984)
.++++|+|+.|+|||||++....
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999999443
No 331
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=91.20 E-value=0.099 Score=51.11 Aligned_cols=22 Identities=41% Similarity=0.552 Sum_probs=19.6
Q ss_pred cEEEEEcCCCChHHHHHHHhhh
Q 001999 176 KKICICGPLGVGKTTIMENSHD 197 (984)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~~~~ 197 (984)
.+++|+|+.|+||||+++....
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999654
No 332
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=91.18 E-value=0.12 Score=50.22 Aligned_cols=25 Identities=32% Similarity=0.328 Sum_probs=21.7
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhh
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDS 198 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~ 198 (984)
....|.|+|+.|+||||+++...+.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999996665
No 333
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=91.15 E-value=0.051 Score=58.96 Aligned_cols=111 Identities=10% Similarity=0.064 Sum_probs=58.1
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCC-eEEEEEeCCCCCHHHHHHHHHHHhccCccccchHHHHHHHHHHHc
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSVGESGRFD-IIFWVNVNTDGNISDIQEIILERLKVNAKELDNAQRADNISKELK 251 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~-~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~L~ 251 (984)
....+++|+|+.|.||||+.+.....+. .... .++.+.-.-.+..... ...+...............|...|.
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~--~~~~~~i~t~ed~~e~~~~~~----~~~v~q~~~~~~~~~~~~~La~aL~ 194 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYLN--NTKYHHILTIEDPIEFVHESK----KCLVNQREVHRDTLGFSEALRSALR 194 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHHH--HHCCCEEEEEESSCCSCCCCS----SSEEEEEEBTTTBSCHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccc--CCCCcEEEEccCcHHhhhhcc----ccceeeeeeccccCCHHHHHHHHhh
Confidence 3445999999999999999998433332 1111 1222221111110000 0000000000011233447888888
Q ss_pred CCcEEEEEECCCCccchhhhccccCCCCcEEEEEcCCcc
Q 001999 252 DKRYVLFLDGVSSEINFKEIGIHDDHGRGKVVFACRSRE 290 (984)
Q Consensus 252 ~kr~LlVlDdv~~~~~~~~~~~~~~~~gs~ilvTTR~~~ 290 (984)
..+=+|++|...+.+.+..+ ......|-.|++||-..+
T Consensus 195 ~~PdvillDEp~d~e~~~~~-~~~~~~G~~vl~t~H~~~ 232 (356)
T 3jvv_A 195 EDPDIILVGEMRDLETIRLA-LTAAETGHLVFGTLHTTS 232 (356)
T ss_dssp SCCSEEEESCCCSHHHHHHH-HHHHHTTCEEEEEESCSS
T ss_pred hCcCEEecCCCCCHHHHHHH-HHHHhcCCEEEEEEccCh
Confidence 89999999999876554433 111233666888886543
No 334
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=91.13 E-value=0.33 Score=54.21 Aligned_cols=95 Identities=14% Similarity=0.157 Sum_probs=55.7
Q ss_pred HHHHhcc-CCccEEEEEcCCCChHHHHHHH-hhhhcccCCCCC-eEEEEEeCCCCC-HHHHHHHHHHHhcc--------C
Q 001999 166 LEKHLSS-GGLKKICICGPLGVGKTTIMEN-SHDSVGESGRFD-IIFWVNVNTDGN-ISDIQEIILERLKV--------N 233 (984)
Q Consensus 166 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~-~~~~~~~~~~F~-~~~wv~vs~~~~-~~~i~~~i~~~l~~--------~ 233 (984)
.++.+.. .+-.-++|+|..|+|||+||.. ..+.. .-+ ..+++-+.+... +.++.+.+.+.=.. .
T Consensus 165 aID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~at 240 (515)
T 2r9v_A 165 AIDSMIPIGRGQRELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVAS 240 (515)
T ss_dssp HHHHHSCEETTCBEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEEC
T ss_pred ccccccccccCCEEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEEC
Confidence 4555554 4566789999999999999754 43332 234 357787887643 45666666543111 1
Q ss_pred ccccch-----HHHHHHHHHHH--cCCcEEEEEECCCC
Q 001999 234 AKELDN-----AQRADNISKEL--KDKRYVLFLDGVSS 264 (984)
Q Consensus 234 ~~~~~~-----~~~~~~l~~~L--~~kr~LlVlDdv~~ 264 (984)
.++... ....-.+.+++ +|+.+||++||+-.
T Consensus 241 ad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~DslTr 278 (515)
T 2r9v_A 241 ASDPASLQYIAPYAGCAMGEYFAYSGRDALVVYDDLSK 278 (515)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccHHH
Confidence 111111 11222344444 47999999999843
No 335
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=91.10 E-value=0.095 Score=50.97 Aligned_cols=25 Identities=32% Similarity=0.458 Sum_probs=21.5
Q ss_pred cEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 176 KKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
.+|.|.|+.|+||||+|+...++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4699999999999999999776654
No 336
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=91.03 E-value=0.1 Score=56.79 Aligned_cols=47 Identities=17% Similarity=0.202 Sum_probs=33.9
Q ss_pred CCCCCchHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHhhhhc
Q 001999 153 ASKFPSHKEYVETLEKHLSSGGLKKICICGPLGVGKTTIMENSHDSV 199 (984)
Q Consensus 153 ~~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~ 199 (984)
-.+++|.+..+..+...+......-+.|+|++|+|||++|+......
T Consensus 23 f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 23 FSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred chhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhC
Confidence 35689998876665444433333448899999999999999965554
No 337
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=91.00 E-value=0.34 Score=54.08 Aligned_cols=95 Identities=20% Similarity=0.256 Sum_probs=55.5
Q ss_pred HHHHhcc-CCccEEEEEcCCCChHHHHHHH-hhhhcccCCCCC-eEEEEEeCCCCC-HHHHHHHHHHHhccC--------
Q 001999 166 LEKHLSS-GGLKKICICGPLGVGKTTIMEN-SHDSVGESGRFD-IIFWVNVNTDGN-ISDIQEIILERLKVN-------- 233 (984)
Q Consensus 166 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~-~~~~~~~~~~F~-~~~wv~vs~~~~-~~~i~~~i~~~l~~~-------- 233 (984)
.++.+.. .+-.-++|+|..|+|||+||.. ..+... -+ ..+++-+.+... +.++.+++.+.=...
T Consensus 152 aID~l~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~~----~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~at 227 (502)
T 2qe7_A 152 AIDSMIPIGRGQRELIIGDRQTGKTTIAIDTIINQKG----QDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTAS 227 (502)
T ss_dssp HHHHSSCCBTTCBCEEEECSSSCHHHHHHHHHHGGGS----CSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEEC
T ss_pred ecccccccccCCEEEEECCCCCCchHHHHHHHHHhhc----CCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEEC
Confidence 4555554 4566789999999999999754 333322 34 357777887643 456666665431111
Q ss_pred ccccch-----HHHHHHHHHHH--cCCcEEEEEECCCC
Q 001999 234 AKELDN-----AQRADNISKEL--KDKRYVLFLDGVSS 264 (984)
Q Consensus 234 ~~~~~~-----~~~~~~l~~~L--~~kr~LlVlDdv~~ 264 (984)
.++... ....-.+.+++ +|+.+||++||+-.
T Consensus 228 ad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dsltr 265 (502)
T 2qe7_A 228 ASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDLSK 265 (502)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecHHH
Confidence 111111 11122344444 47999999999843
No 338
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=90.96 E-value=0.6 Score=50.23 Aligned_cols=51 Identities=20% Similarity=0.232 Sum_probs=34.0
Q ss_pred HHHHHhcc-CCccEEEEEcCCCChHHHHHHHhhhhccc-CCCCCeEEEEEeCCC
Q 001999 165 TLEKHLSS-GGLKKICICGPLGVGKTTIMENSHDSVGE-SGRFDIIFWVNVNTD 216 (984)
Q Consensus 165 ~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~~~~~~~~-~~~F~~~~wv~vs~~ 216 (984)
++++.+.. .+-.-++|+|..|+|||+|+++....+.. ...+.+ +++-+.+.
T Consensus 164 raID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~-V~~lIGER 216 (427)
T 3l0o_A 164 RLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTIR-IILLIDER 216 (427)
T ss_dssp HHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSEE-EEEECSCC
T ss_pred hhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeEE-EEEEeccC
Confidence 56677765 55678899999999999999875444321 123333 45666654
No 339
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=90.95 E-value=0.13 Score=50.09 Aligned_cols=27 Identities=30% Similarity=0.267 Sum_probs=22.7
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
...+|.|+|+.|+||||+++.......
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 457899999999999999999665553
No 340
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=90.95 E-value=0.13 Score=50.57 Aligned_cols=27 Identities=30% Similarity=0.327 Sum_probs=22.8
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
...+|.|.|+.|+||||+|+...+...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999766553
No 341
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=90.93 E-value=0.22 Score=49.34 Aligned_cols=24 Identities=29% Similarity=0.440 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHhhhhcc
Q 001999 177 KICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 177 vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
+|.|.|++|+||+|.|+...++..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 688999999999999999766654
No 342
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=90.93 E-value=0.15 Score=56.68 Aligned_cols=47 Identities=23% Similarity=0.286 Sum_probs=36.3
Q ss_pred CCCCchHHHHHHHHHHhcc--------------CCccEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 154 SKFPSHKEYVETLEKHLSS--------------GGLKKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 154 ~~~vgr~~~~~~l~~~L~~--------------~~~~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
..++|.++.++.+...+.. ...+-|.++|++|+||||+|+.......
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~ 75 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3578998888888666522 1245688999999999999999777665
No 343
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=90.91 E-value=0.12 Score=51.45 Aligned_cols=25 Identities=32% Similarity=0.302 Sum_probs=21.5
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhh
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDS 198 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~ 198 (984)
...+|+|+|+.|+||||+|+.....
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4579999999999999999995544
No 344
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=90.89 E-value=0.12 Score=53.39 Aligned_cols=25 Identities=28% Similarity=0.304 Sum_probs=21.2
Q ss_pred cEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 176 KKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
++|.|.|+.|+||||||+...+...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4789999999999999999665543
No 345
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=90.88 E-value=0.019 Score=56.03 Aligned_cols=19 Identities=42% Similarity=0.510 Sum_probs=17.2
Q ss_pred cEEEEEcCCCChHHHHHHH
Q 001999 176 KKICICGPLGVGKTTIMEN 194 (984)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~ 194 (984)
.++.|+|+.|+||||++..
T Consensus 4 ~i~vi~G~~gsGKTT~ll~ 22 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLS 22 (184)
T ss_dssp CEEEEEESTTSSHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHH
Confidence 5788999999999999966
No 346
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=90.84 E-value=0.11 Score=49.88 Aligned_cols=25 Identities=28% Similarity=0.468 Sum_probs=21.6
Q ss_pred cEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 176 KKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
.+|.|.|+.|+||||+|+...+...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999776654
No 347
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=90.74 E-value=0.13 Score=50.71 Aligned_cols=26 Identities=27% Similarity=0.252 Sum_probs=22.2
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhh
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDS 198 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~ 198 (984)
.+..+|+|+|+.|+||||+|+...+.
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 35679999999999999999996554
No 348
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=90.71 E-value=0.19 Score=52.80 Aligned_cols=26 Identities=19% Similarity=0.304 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhhc
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDSV 199 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 199 (984)
...+|.|.|++|+||||+|+...+..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999966554
No 349
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=90.68 E-value=0.12 Score=49.95 Aligned_cols=20 Identities=50% Similarity=0.680 Sum_probs=17.7
Q ss_pred EEEEEcCCCChHHHHHHHhh
Q 001999 177 KICICGPLGVGKTTIMENSH 196 (984)
Q Consensus 177 vi~I~G~gGiGKTtLa~~~~ 196 (984)
.++|+|+.|+|||||++...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~ 21 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIV 21 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999833
No 350
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=90.65 E-value=0.63 Score=48.98 Aligned_cols=26 Identities=23% Similarity=0.124 Sum_probs=21.4
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhhc
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDSV 199 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 199 (984)
...+++|+|.+|+||||++.......
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999944443
No 351
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=90.63 E-value=0.12 Score=52.30 Aligned_cols=25 Identities=32% Similarity=0.494 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCChHHHHHHHhhhhc
Q 001999 175 LKKICICGPLGVGKTTIMENSHDSV 199 (984)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~~~~~~ 199 (984)
..+|+|+|+.|+||||+|+......
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999966554
No 352
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=90.61 E-value=0.11 Score=51.36 Aligned_cols=22 Identities=32% Similarity=0.629 Sum_probs=19.5
Q ss_pred cEEEEEcCCCChHHHHHHHhhh
Q 001999 176 KKICICGPLGVGKTTIMENSHD 197 (984)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~~~~ 197 (984)
.+|+|+|+.|+||||+++....
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999554
No 353
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=90.58 E-value=0.15 Score=52.55 Aligned_cols=27 Identities=30% Similarity=0.401 Sum_probs=23.3
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
...+|+|+|+.|+||||+++...++..
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 457999999999999999999776654
No 354
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=90.56 E-value=0.13 Score=50.30 Aligned_cols=25 Identities=28% Similarity=0.500 Sum_probs=21.3
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhh
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDS 198 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~ 198 (984)
..++|+|+|+.|+|||||++.....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh
Confidence 5679999999999999999994443
No 355
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=90.56 E-value=0.1 Score=50.56 Aligned_cols=26 Identities=38% Similarity=0.575 Sum_probs=18.4
Q ss_pred ccEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 175 LKKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
..+|.|.|+.|+||||+|+...+...
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35899999999999999999776654
No 356
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=90.54 E-value=0.14 Score=52.64 Aligned_cols=27 Identities=19% Similarity=0.238 Sum_probs=22.0
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhc
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSV 199 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~ 199 (984)
....+|+|.|+.|+||||+|+...+..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 355789999999999999999865543
No 357
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=90.54 E-value=0.13 Score=51.08 Aligned_cols=27 Identities=22% Similarity=0.458 Sum_probs=21.8
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhc
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSV 199 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~ 199 (984)
..-.+++|+|+.|+|||||++......
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 356799999999999999999954443
No 358
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=90.50 E-value=0.13 Score=50.61 Aligned_cols=26 Identities=38% Similarity=0.399 Sum_probs=22.2
Q ss_pred ccEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 175 LKKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
..+|+|.|+.|+||||+|+...++..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999766653
No 359
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=90.48 E-value=0.14 Score=50.12 Aligned_cols=25 Identities=20% Similarity=0.186 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCChHHHHHHHhhhhc
Q 001999 175 LKKICICGPLGVGKTTIMENSHDSV 199 (984)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~~~~~~ 199 (984)
..+|.|.|+.|+||||+|+...+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999866554
No 360
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=90.42 E-value=0.12 Score=51.90 Aligned_cols=25 Identities=36% Similarity=0.773 Sum_probs=20.7
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhh
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHD 197 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~ 197 (984)
....+++|+|+.|+|||||++....
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3457899999999999999999433
No 361
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=90.42 E-value=0.13 Score=51.16 Aligned_cols=22 Identities=36% Similarity=0.459 Sum_probs=19.5
Q ss_pred cEEEEEcCCCChHHHHHHHhhh
Q 001999 176 KKICICGPLGVGKTTIMENSHD 197 (984)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~~~~ 197 (984)
.+|+|+|+.|+||||+++....
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999644
No 362
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=90.40 E-value=0.13 Score=52.66 Aligned_cols=26 Identities=31% Similarity=0.480 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhhc
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDSV 199 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 199 (984)
...+|+|+|+.|+||||+++...+..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35799999999999999999966554
No 363
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=90.33 E-value=0.14 Score=49.71 Aligned_cols=26 Identities=27% Similarity=0.418 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 175 LKKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
...|.+.|+.|+||||+|+...+...
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999665543
No 364
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=90.29 E-value=0.73 Score=45.80 Aligned_cols=32 Identities=22% Similarity=0.315 Sum_probs=24.7
Q ss_pred ccEEEEEcCCCChHHHHHHHhhhhcccCCCCCe
Q 001999 175 LKKICICGPLGVGKTTIMENSHDSVGESGRFDI 207 (984)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~ 207 (984)
...|.|.|+.|+||||+++...+.... ..+..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~-~~~~v 37 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRE-RGIEV 37 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHT-TTCCE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHH-cCCCc
Confidence 468999999999999999996666641 34544
No 365
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=90.22 E-value=0.14 Score=54.38 Aligned_cols=27 Identities=22% Similarity=0.186 Sum_probs=22.5
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhc
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSV 199 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~ 199 (984)
....+|+|+|..|+|||||++......
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 456799999999999999999954444
No 366
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=90.22 E-value=0.15 Score=49.90 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhhc
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDSV 199 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 199 (984)
...+|+|.|+.|+||||+|+...+..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 56799999999999999999966553
No 367
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=90.16 E-value=0.15 Score=48.52 Aligned_cols=24 Identities=25% Similarity=0.320 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHhhhhcc
Q 001999 177 KICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 177 vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
.|.|.|+.|+||||+|+...+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999766553
No 368
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=90.15 E-value=0.16 Score=52.67 Aligned_cols=25 Identities=32% Similarity=0.434 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCChHHHHHHHhhhhc
Q 001999 175 LKKICICGPLGVGKTTIMENSHDSV 199 (984)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~~~~~~ 199 (984)
..+|.|.|++|+||||+|+...+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999966553
No 369
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=90.14 E-value=0.18 Score=51.98 Aligned_cols=27 Identities=30% Similarity=0.306 Sum_probs=22.7
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
...+|.|+|++|+||||+|+...+...
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 457899999999999999999666553
No 370
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=90.14 E-value=1.6 Score=49.40 Aligned_cols=25 Identities=28% Similarity=0.208 Sum_probs=19.9
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhh
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDS 198 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~ 198 (984)
..++|+|+|.+|+||||++......
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~ 124 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYY 124 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999994433
No 371
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=90.11 E-value=0.21 Score=53.02 Aligned_cols=27 Identities=26% Similarity=0.220 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
...+|+|.|..|+||||+|+.......
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 455999999999999999999555543
No 372
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=90.10 E-value=0.22 Score=52.66 Aligned_cols=26 Identities=27% Similarity=0.293 Sum_probs=21.8
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhhc
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDSV 199 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 199 (984)
...+++|+|++|+||||+++......
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 46799999999999999999954444
No 373
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=90.04 E-value=0.21 Score=48.84 Aligned_cols=39 Identities=18% Similarity=0.333 Sum_probs=27.7
Q ss_pred HHHHHHHHhcc-CCccEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 162 YVETLEKHLSS-GGLKKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 162 ~~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
-+..+..++.. ++.+.+.|+|++|+||||+|....+.++
T Consensus 44 f~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 44 FLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp HHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34455555543 3345799999999999999988655554
No 374
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=89.98 E-value=0.15 Score=49.74 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=22.0
Q ss_pred ccEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 175 LKKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
..+|+|.|+.|+||||+|+...+...
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999766543
No 375
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=89.85 E-value=0.47 Score=52.65 Aligned_cols=98 Identities=9% Similarity=0.043 Sum_probs=56.8
Q ss_pred HHHHhcc-CCccEEEEEcCCCChHHHHHHHhhhhcccCC--CCCeEEEEEeCCCC-CHHHHHHHHHHHhccC--------
Q 001999 166 LEKHLSS-GGLKKICICGPLGVGKTTIMENSHDSVGESG--RFDIIFWVNVNTDG-NISDIQEIILERLKVN-------- 233 (984)
Q Consensus 166 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~--~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~-------- 233 (984)
.++.|.. .+-.-++|+|..|+|||+|+.+........+ .=+..+++-+.+.. .+.++.+++.+.=...
T Consensus 142 ~ID~l~pigrGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~t 221 (469)
T 2c61_A 142 TIDGTNTLVRGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNL 221 (469)
T ss_dssp HHHTTSCCBTTCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEE
T ss_pred eeeeeeccccCCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEEC
Confidence 3555554 4556778899999999999988444433101 11356777777654 3556666665531111
Q ss_pred ccccch-----HHHHHHHHHHH---cCCcEEEEEECCC
Q 001999 234 AKELDN-----AQRADNISKEL---KDKRYVLFLDGVS 263 (984)
Q Consensus 234 ~~~~~~-----~~~~~~l~~~L---~~kr~LlVlDdv~ 263 (984)
.+.... ....-.+.+++ +|+.+|+++||+-
T Consensus 222 sd~p~~~r~~~~~~a~tiAEyfrdd~G~dVLl~~Dslt 259 (469)
T 2c61_A 222 ADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDIT 259 (469)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeCHH
Confidence 111111 22223344554 4799999999973
No 376
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=89.83 E-value=0.17 Score=51.89 Aligned_cols=25 Identities=24% Similarity=0.218 Sum_probs=21.3
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhh
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHD 197 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~ 197 (984)
....+|+|.|+.|+|||||++....
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999998444
No 377
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=89.81 E-value=0.16 Score=50.84 Aligned_cols=26 Identities=15% Similarity=0.318 Sum_probs=21.2
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhh
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDS 198 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~ 198 (984)
....+++|+|+.|+|||||.+.....
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 35679999999999999999994433
No 378
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=89.80 E-value=0.77 Score=45.59 Aligned_cols=53 Identities=19% Similarity=0.168 Sum_probs=32.4
Q ss_pred ccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 001999 175 LKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEIILE 228 (984)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~ 228 (984)
...|.|.|..|+||||+++...+..+. ..+..+++..-.....+.+.+++++.
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~~-~~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLEQ-LGIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHHH-TTCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH-cCCCcceeeeCCCCCHHHHHHHHHHh
Confidence 358999999999999999996666542 34433344433222223444444443
No 379
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=89.79 E-value=0.17 Score=50.02 Aligned_cols=27 Identities=26% Similarity=0.459 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
...+|.|.|+.|+||||+|+...+...
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345899999999999999999766553
No 380
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=89.67 E-value=0.66 Score=51.60 Aligned_cols=27 Identities=22% Similarity=0.282 Sum_probs=23.2
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhc
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSV 199 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~ 199 (984)
....+|.|+|++|+||||+|+...++.
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 456899999999999999999966654
No 381
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=89.66 E-value=0.17 Score=49.49 Aligned_cols=23 Identities=30% Similarity=0.270 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHhhhhc
Q 001999 177 KICICGPLGVGKTTIMENSHDSV 199 (984)
Q Consensus 177 vi~I~G~gGiGKTtLa~~~~~~~ 199 (984)
+|+|.|+.|+||||+|+...+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999966655
No 382
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=89.61 E-value=0.68 Score=51.54 Aligned_cols=96 Identities=15% Similarity=0.157 Sum_probs=55.0
Q ss_pred HHHHhcc-CCccEEEEEcCCCChHHHHHHH-hhhhcccCCCCCeEEEEEeCCCCC-HHHHHHHHHHHhccC--------c
Q 001999 166 LEKHLSS-GGLKKICICGPLGVGKTTIMEN-SHDSVGESGRFDIIFWVNVNTDGN-ISDIQEIILERLKVN--------A 234 (984)
Q Consensus 166 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~-~~~~~~~~~~F~~~~wv~vs~~~~-~~~i~~~i~~~l~~~--------~ 234 (984)
.++.|.. .+-.-++|+|..|+|||+||.. ..+.. ..-...+++-+.+... +.++.+++.+.=... .
T Consensus 152 aID~l~PigrGQR~~Ifg~~g~GKT~l~l~~I~n~~---~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~ata 228 (513)
T 3oaa_A 152 AVDSMIPIGRGQRELIIGDRQTGKTALAIDAIINQR---DSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATA 228 (513)
T ss_dssp HHHHHSCCBTTCBCEEEESSSSSHHHHHHHHHHTTS---SSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECT
T ss_pred eeccccccccCCEEEeecCCCCCcchHHHHHHHhhc---cCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECC
Confidence 4455554 4556789999999999999754 33321 2112467888888653 456666654431111 1
Q ss_pred cccch-----HHHHHHHHHHH--cCCcEEEEEECCCC
Q 001999 235 KELDN-----AQRADNISKEL--KDKRYVLFLDGVSS 264 (984)
Q Consensus 235 ~~~~~-----~~~~~~l~~~L--~~kr~LlVlDdv~~ 264 (984)
++... ....-.+.+++ +|+.+||++||+-.
T Consensus 229 d~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr 265 (513)
T 3oaa_A 229 SESAALQYLAPYAGCAMGEYFRDRGEDALIIYDDLSK 265 (513)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEETHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHhcCCCEEEEecChHH
Confidence 11111 11122233333 58999999999854
No 383
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=89.58 E-value=0.21 Score=49.75 Aligned_cols=27 Identities=19% Similarity=0.089 Sum_probs=22.6
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
...+|+|.|+.|+||||+|+...+...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 346899999999999999999666553
No 384
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=89.52 E-value=0.19 Score=47.34 Aligned_cols=24 Identities=29% Similarity=0.392 Sum_probs=20.9
Q ss_pred CCccEEEEEcCCCChHHHHHHHhh
Q 001999 173 GGLKKICICGPLGVGKTTIMENSH 196 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~ 196 (984)
....+++|+|+.|.|||||++...
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~ 54 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGML 54 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHH
Confidence 456799999999999999999933
No 385
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=89.52 E-value=0.82 Score=48.89 Aligned_cols=53 Identities=17% Similarity=0.038 Sum_probs=36.3
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEIILERL 230 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l 230 (984)
...++.|.|.+|+||||+|......+. .+=..++|++. ..+...+...++...
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a--~~g~~Vl~fSl--Ems~~ql~~Rlls~~ 97 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSAL--NDDRGVAVFSL--EMSAEQLALRALSDL 97 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHH--HTTCEEEEEES--SSCHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH--HcCCeEEEEeC--CCCHHHHHHHHHHHh
Confidence 457899999999999999998444332 11135666654 457777777776553
No 386
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=89.48 E-value=0.91 Score=51.13 Aligned_cols=58 Identities=19% Similarity=0.304 Sum_probs=41.1
Q ss_pred HHHHHhcc-CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCC-HHHHHHHH
Q 001999 165 TLEKHLSS-GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGN-ISDIQEII 226 (984)
Q Consensus 165 ~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~-~~~i~~~i 226 (984)
++++.|.. .+-.-++|+|..|+|||+|+++..+.. +-+..+++-+.+... +.++.+++
T Consensus 216 rvID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~----~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 216 RVIDTFFPQAKGGTAAIPGPAGSGKTVTQHQLAKWS----DAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp HHHHHHSCEETTCEEEECSCCSHHHHHHHHHHHHHS----SCSEEEEEECCSSSSHHHHHHHHT
T ss_pred chhhccCCcccCCeEEeecCCCCCHHHHHHHHHhcc----CCCEEEEEEecccHHHHHHHHHHH
Confidence 34555654 566789999999999999999854432 235788888888765 45555554
No 387
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=89.46 E-value=0.33 Score=49.61 Aligned_cols=27 Identities=26% Similarity=0.137 Sum_probs=22.7
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhc
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSV 199 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~ 199 (984)
....+|.|.|+.|+||||+|+...+..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999966554
No 388
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=89.41 E-value=0.11 Score=49.66 Aligned_cols=24 Identities=25% Similarity=0.271 Sum_probs=19.7
Q ss_pred ccEEEEEcCCCChHHHHHHHhhhh
Q 001999 175 LKKICICGPLGVGKTTIMENSHDS 198 (984)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~~~~~ 198 (984)
.++++|+|..|+|||||++.....
T Consensus 2 ~~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 2 SLILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp -CEEEEEESCHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999984333
No 389
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=89.39 E-value=0.47 Score=46.92 Aligned_cols=30 Identities=30% Similarity=0.490 Sum_probs=24.5
Q ss_pred cEEEEEcCCCChHHHHHHHhhhhcccCCCCCe
Q 001999 176 KKICICGPLGVGKTTIMENSHDSVGESGRFDI 207 (984)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~ 207 (984)
+.|+|-|..|+||||+++...+... +.++.
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~--~~~~v 32 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLV--KDYDV 32 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT--TTSCE
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHH--CCCCE
Confidence 5789999999999999999777775 45543
No 390
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=89.37 E-value=2 Score=48.31 Aligned_cols=52 Identities=15% Similarity=0.120 Sum_probs=33.9
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHHH
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEIIL 227 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~ 227 (984)
....++.|.|.+|+||||||......+.. ..=..++|++.. .+...+...++
T Consensus 201 ~~G~liiI~G~pG~GKTtl~l~ia~~~~~-~~g~~Vl~~s~E--~s~~~l~~r~~ 252 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAFALNIAQNVAT-KTNENVAIFSLE--MSAQQLVMRML 252 (454)
T ss_dssp CTTCEEEEECCTTSCHHHHHHHHHHHHHH-HSSCCEEEEESS--SCHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHH-hCCCcEEEEECC--CCHHHHHHHHH
Confidence 35579999999999999999994433320 111256777644 35566666654
No 391
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=89.35 E-value=0.19 Score=49.98 Aligned_cols=32 Identities=19% Similarity=0.100 Sum_probs=24.5
Q ss_pred ccEEEEEcCCCChHHHHHHHhhhhcccCCCCCe
Q 001999 175 LKKICICGPLGVGKTTIMENSHDSVGESGRFDI 207 (984)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~ 207 (984)
..+|+|.|+.|+||||+|+...+.... .+++.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~-~~~~~ 41 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKN-NNVEV 41 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHH-TTCCE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH-cCCcE
Confidence 468999999999999999996665431 34454
No 392
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=89.26 E-value=0.2 Score=50.66 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=22.1
Q ss_pred ccEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 175 LKKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
...|.|.|+.|+||||+|+...+...
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999766543
No 393
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=89.19 E-value=0.32 Score=47.42 Aligned_cols=64 Identities=14% Similarity=0.154 Sum_probs=34.5
Q ss_pred hhcCCCccEEeccCC-CCcc-----CCcchhcccccCeEecCCCcccc-----cCchhhhccCCCcEEEecCcccc
Q 001999 540 FEYMCHLQLLDLHDT-SIRC-----LPPSISRLINLNALFLRSCSLLF-----QLPKEIRYLQKLEILDVRHTRIQ 604 (984)
Q Consensus 540 ~~~l~~Lr~L~L~~~-~i~~-----lp~~i~~l~~L~~L~L~~c~~l~-----~lp~~i~~L~~L~~L~l~~~~l~ 604 (984)
+.+-+.|+.|+|+++ .|.. +-..+..-.+|+.|+|++|. +. .+...+..=+.|++|+|++|.|.
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~-igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCC-CChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 344567888888875 6652 23334444566666666654 22 12222333355666666666554
No 394
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=89.16 E-value=0.23 Score=49.08 Aligned_cols=25 Identities=32% Similarity=0.162 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCChHHHHHHHhhhhc
Q 001999 175 LKKICICGPLGVGKTTIMENSHDSV 199 (984)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~~~~~~ 199 (984)
..+|+|.|+.|+||||+++...+..
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999966654
No 395
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=89.12 E-value=0.19 Score=50.50 Aligned_cols=26 Identities=27% Similarity=0.194 Sum_probs=22.2
Q ss_pred ccEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 175 LKKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
...|.|.|+.|+||||+|+...+...
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999776654
No 396
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=89.12 E-value=0.11 Score=51.99 Aligned_cols=24 Identities=33% Similarity=0.409 Sum_probs=20.4
Q ss_pred cEEEEEcCCCChHHHHHHHhhhhc
Q 001999 176 KKICICGPLGVGKTTIMENSHDSV 199 (984)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~~~~~~ 199 (984)
.+|+|+|+.|+||||+|+...+..
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 378999999999999999955554
No 397
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=89.03 E-value=0.22 Score=49.96 Aligned_cols=26 Identities=27% Similarity=0.431 Sum_probs=22.1
Q ss_pred ccEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 175 LKKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
...|.|.|+.|+||||+|+...+...
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 45799999999999999999766654
No 398
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=89.01 E-value=0.15 Score=52.21 Aligned_cols=26 Identities=31% Similarity=0.471 Sum_probs=22.7
Q ss_pred ccEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 175 LKKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
..+|+|+|+.|+||||+++.......
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999999777654
No 399
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=88.84 E-value=0.22 Score=50.54 Aligned_cols=27 Identities=26% Similarity=0.266 Sum_probs=22.9
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhc
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSV 199 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~ 199 (984)
..-.+++|+|+.|+|||||.+......
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 456799999999999999999965544
No 400
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=88.80 E-value=0.49 Score=52.17 Aligned_cols=99 Identities=11% Similarity=0.084 Sum_probs=55.8
Q ss_pred HHHHhcc-CCccEEEEEcCCCChHHHHHHHhhhhcccC--------CCCC-eEEEEEeCCCC-CHHHHHHHHHHH--hcc
Q 001999 166 LEKHLSS-GGLKKICICGPLGVGKTTIMENSHDSVGES--------GRFD-IIFWVNVNTDG-NISDIQEIILER--LKV 232 (984)
Q Consensus 166 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~--------~~F~-~~~wv~vs~~~-~~~~i~~~i~~~--l~~ 232 (984)
.++.|.. .+-.-++|+|..|+|||+|+.+..+..... ++=+ ..+++-+.+.. .+.++.+++.+. +..
T Consensus 137 aID~l~pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~r 216 (464)
T 3gqb_B 137 TIDVMNTLVRGQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSR 216 (464)
T ss_dssp HHHTTSCCBTTCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGG
T ss_pred eeecccccccCCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccc
Confidence 3455544 345567899999999999998844443310 0111 56777777654 345556655442 110
Q ss_pred ------Cccccch-----HHHHHHHHHHHc---CCcEEEEEECCCC
Q 001999 233 ------NAKELDN-----AQRADNISKELK---DKRYVLFLDGVSS 264 (984)
Q Consensus 233 ------~~~~~~~-----~~~~~~l~~~L~---~kr~LlVlDdv~~ 264 (984)
..++... ....-.+.+++. |+.+||++||+-.
T Consensus 217 tvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlTr 262 (464)
T 3gqb_B 217 SVLFLNKADDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDMTN 262 (464)
T ss_dssp EEEEEEETTSCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHHH
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 0111111 222333555553 7899999999843
No 401
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=88.73 E-value=0.69 Score=60.64 Aligned_cols=84 Identities=15% Similarity=0.106 Sum_probs=54.2
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHHHHHhccCccc------cchHHHHHHH
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEIILERLKVNAKE------LDNAQRADNI 246 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~------~~~~~~~~~l 246 (984)
...+++-|+|++|+|||+||.+...... .+=..++|+++...++... ++.++.+... .+.++....+
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~ala~ea~--~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~ 1497 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1497 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHH
Confidence 3578999999999999999999433332 2223578888888777666 4444422111 1114444445
Q ss_pred HHHHc-CCcEEEEEECCC
Q 001999 247 SKELK-DKRYVLFLDGVS 263 (984)
Q Consensus 247 ~~~L~-~kr~LlVlDdv~ 263 (984)
++..+ .+.-+||+|.+.
T Consensus 1498 ~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1498 DALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHHTCCSEEEESCGG
T ss_pred HHHHhcCCCCEEEEcChh
Confidence 54443 577899999984
No 402
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=88.59 E-value=0.23 Score=50.62 Aligned_cols=26 Identities=31% Similarity=0.496 Sum_probs=22.1
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhc
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSV 199 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~ 199 (984)
.. .+++|+|+.|.|||||.+......
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 56 899999999999999999954443
No 403
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=88.53 E-value=0.23 Score=49.57 Aligned_cols=23 Identities=30% Similarity=0.378 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHhhhhc
Q 001999 177 KICICGPLGVGKTTIMENSHDSV 199 (984)
Q Consensus 177 vi~I~G~gGiGKTtLa~~~~~~~ 199 (984)
.|+|.|+.|+||||+|+...+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999965554
No 404
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=88.50 E-value=0.25 Score=49.18 Aligned_cols=27 Identities=19% Similarity=0.177 Sum_probs=22.3
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhc
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSV 199 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~ 199 (984)
....+|.|.|+.|+||||+|+...+..
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 345799999999999999999955443
No 405
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=88.46 E-value=0.19 Score=48.99 Aligned_cols=20 Identities=40% Similarity=0.870 Sum_probs=18.0
Q ss_pred cEEEEEcCCCChHHHHHHHh
Q 001999 176 KKICICGPLGVGKTTIMENS 195 (984)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~~ 195 (984)
.+++|+|+.|+|||||++..
T Consensus 2 ~~i~i~G~nG~GKTTll~~l 21 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKA 21 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHH
Confidence 47899999999999999983
No 406
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=88.45 E-value=0.22 Score=52.14 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=20.4
Q ss_pred CccEEEEEcCCCChHHHHHHHhh
Q 001999 174 GLKKICICGPLGVGKTTIMENSH 196 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~ 196 (984)
...+|+|.|+.|+||||+|+...
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999955
No 407
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=88.38 E-value=0.56 Score=55.09 Aligned_cols=45 Identities=13% Similarity=0.273 Sum_probs=37.5
Q ss_pred CCCCchHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 154 SKFPSHKEYVETLEKHLSSGGLKKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 154 ~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
..++|.+..++.+...+..+ ..+.|+|+.|+||||||+.......
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred ceEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccCC
Confidence 56799999988887777654 5889999999999999999766654
No 408
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=88.34 E-value=0.25 Score=47.71 Aligned_cols=25 Identities=24% Similarity=0.286 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCChHHHHHHHhhhhc
Q 001999 175 LKKICICGPLGVGKTTIMENSHDSV 199 (984)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~~~~~~ 199 (984)
..+|+|+|+.|+||||+++......
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999965554
No 409
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=88.30 E-value=0.17 Score=51.31 Aligned_cols=26 Identities=23% Similarity=0.266 Sum_probs=16.6
Q ss_pred CccEEEEEcCCCChHHHHHHHhh-hhc
Q 001999 174 GLKKICICGPLGVGKTTIMENSH-DSV 199 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~-~~~ 199 (984)
...+++|+|+.|+|||||++... ...
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 45799999999999999999966 444
No 410
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=88.29 E-value=0.25 Score=49.31 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHhhhhc
Q 001999 177 KICICGPLGVGKTTIMENSHDSV 199 (984)
Q Consensus 177 vi~I~G~gGiGKTtLa~~~~~~~ 199 (984)
.|+|.|+.|+||||+|+...+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999966554
No 411
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=88.29 E-value=0.25 Score=48.94 Aligned_cols=25 Identities=24% Similarity=0.469 Sum_probs=21.5
Q ss_pred cEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 176 KKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
++|+|.|+.|+||||+|+...+...
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3899999999999999999766553
No 412
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=88.23 E-value=0.23 Score=52.76 Aligned_cols=26 Identities=31% Similarity=0.456 Sum_probs=21.3
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhh
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDS 198 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~ 198 (984)
...++|+|+|.||+||||+|......
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~ 64 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAA 64 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCccHHHHHHHHHHH
Confidence 46789999999999999999984333
No 413
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=88.21 E-value=0.25 Score=47.42 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=21.4
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhhc
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDSV 199 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 199 (984)
..++++|+|..|+|||||+.......
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 36799999999999999999844433
No 414
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=88.20 E-value=0.25 Score=52.67 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=21.1
Q ss_pred cEEEEEcCCCChHHHHHHHhhhhc
Q 001999 176 KKICICGPLGVGKTTIMENSHDSV 199 (984)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~~~~~~ 199 (984)
.+|+|.|+.|+||||||+...+..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 589999999999999999966654
No 415
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=88.18 E-value=0.43 Score=51.90 Aligned_cols=34 Identities=35% Similarity=0.463 Sum_probs=25.9
Q ss_pred HHHHHHHhc--cCCccEEEEEcCCCChHHHHHHHhh
Q 001999 163 VETLEKHLS--SGGLKKICICGPLGVGKTTIMENSH 196 (984)
Q Consensus 163 ~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~~~ 196 (984)
..++.+.+. ..+..+|+|+|.+|+|||||+....
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~ 100 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALG 100 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHH
Confidence 444455454 3567899999999999999999843
No 416
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=88.18 E-value=0.6 Score=46.88 Aligned_cols=27 Identities=33% Similarity=0.217 Sum_probs=19.7
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
....|.|.|+.|+||||+++...+...
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 356899999999999999999666654
No 417
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=88.13 E-value=1.5 Score=44.34 Aligned_cols=37 Identities=27% Similarity=0.308 Sum_probs=27.2
Q ss_pred ccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEE
Q 001999 175 LKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVN 212 (984)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~ 212 (984)
...|.|.|+.|+||||+++...+.... .++..++...
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~-~~~~~~~~~r 63 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQ-NGIDHITRTR 63 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHH-TTCCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh-cCCCeeeeec
Confidence 468999999999999999996665541 4555344443
No 418
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=88.12 E-value=0.26 Score=49.33 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.2
Q ss_pred ccEEEEEcCCCChHHHHHHHhhh
Q 001999 175 LKKICICGPLGVGKTTIMENSHD 197 (984)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~~~~ 197 (984)
..+|+|.|+.|+||||+++...+
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999654
No 419
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=88.11 E-value=0.44 Score=53.28 Aligned_cols=88 Identities=16% Similarity=0.293 Sum_probs=49.9
Q ss_pred CCccEEEEEcCCCChHHHHHHH-hhhhcccCCCCC-eEEEEEeCCCCC-HHHHHHHHHHHhcc--------Cccccch--
Q 001999 173 GGLKKICICGPLGVGKTTIMEN-SHDSVGESGRFD-IIFWVNVNTDGN-ISDIQEIILERLKV--------NAKELDN-- 239 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~-~~~~~~~~~~F~-~~~wv~vs~~~~-~~~i~~~i~~~l~~--------~~~~~~~-- 239 (984)
.+-.-++|+|..|+|||+||.. ..+... -+ ..+++-+.+... +.++.+++.+.=.. ..++...
T Consensus 161 grGQR~~Ifg~~g~GKT~Lal~~I~~~~~----~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r 236 (507)
T 1fx0_A 161 GRGQRELIIGDRQTGKTAVATDTILNQQG----QNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQ 236 (507)
T ss_dssp BTTCBCBEEESSSSSHHHHHHHHHHTCCT----TTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGT
T ss_pred ccCCEEEEecCCCCCccHHHHHHHHHhhc----CCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHH
Confidence 3456778999999999999754 443332 33 357777877543 44445444432100 1111111
Q ss_pred ---HHHHHHHHHHH--cCCcEEEEEECCCC
Q 001999 240 ---AQRADNISKEL--KDKRYVLFLDGVSS 264 (984)
Q Consensus 240 ---~~~~~~l~~~L--~~kr~LlVlDdv~~ 264 (984)
....-.+.+++ +|+.+||++||+-.
T Consensus 237 ~~a~~~a~tiAEyfrd~G~dVLli~Dsltr 266 (507)
T 1fx0_A 237 YLAPYTGAALAEYFMYRERHTLIIYDDLSK 266 (507)
T ss_dssp THHHHHHHHHHHHHHHTTCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEEecHHH
Confidence 12222233333 58999999999843
No 420
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=88.10 E-value=0.25 Score=52.27 Aligned_cols=26 Identities=31% Similarity=0.279 Sum_probs=21.6
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhhc
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDSV 199 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 199 (984)
...+++|+|+.|+||||+++......
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999944443
No 421
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=88.08 E-value=0.73 Score=46.07 Aligned_cols=28 Identities=29% Similarity=0.172 Sum_probs=23.7
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
.....|.|.|+.|+||||+++...+...
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4567999999999999999999666654
No 422
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=88.06 E-value=0.27 Score=50.01 Aligned_cols=25 Identities=16% Similarity=0.351 Sum_probs=21.4
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhh
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHD 197 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~ 197 (984)
..-.+++|+|+.|.|||||++....
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4567999999999999999998433
No 423
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=88.04 E-value=0.26 Score=49.64 Aligned_cols=26 Identities=23% Similarity=0.498 Sum_probs=22.4
Q ss_pred ccEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 175 LKKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
..+|+|.|+.|+||||+|+...+...
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999776654
No 424
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=88.01 E-value=0.23 Score=50.01 Aligned_cols=27 Identities=22% Similarity=0.116 Sum_probs=22.5
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhc
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSV 199 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~ 199 (984)
..-.+++|+|+.|.|||||.+......
T Consensus 28 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp ETTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 355799999999999999999965444
No 425
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=87.92 E-value=0.25 Score=52.50 Aligned_cols=27 Identities=26% Similarity=0.230 Sum_probs=22.5
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhc
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSV 199 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~ 199 (984)
....+|+|+|..|+|||||++......
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 345799999999999999999955544
No 426
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=87.91 E-value=0.52 Score=47.57 Aligned_cols=27 Identities=30% Similarity=0.334 Sum_probs=23.8
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
...+|+|.|+.|+||||+++...+...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 457899999999999999999777775
No 427
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=87.90 E-value=0.29 Score=51.99 Aligned_cols=27 Identities=19% Similarity=0.263 Sum_probs=22.6
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
..++|.|+|+.|+||||||....++..
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 346899999999999999999776553
No 428
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=87.79 E-value=0.25 Score=50.64 Aligned_cols=23 Identities=26% Similarity=0.300 Sum_probs=20.3
Q ss_pred CCccEEEEEcCCCChHHHHHHHh
Q 001999 173 GGLKKICICGPLGVGKTTIMENS 195 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~ 195 (984)
..-.+++|+|+.|+|||||++..
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i 50 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQF 50 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHH
Confidence 35679999999999999999983
No 429
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=87.71 E-value=0.28 Score=50.67 Aligned_cols=27 Identities=26% Similarity=0.230 Sum_probs=22.7
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhc
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSV 199 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~ 199 (984)
..-.+++|+|+.|.|||||.+......
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 456799999999999999999955444
No 430
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=87.54 E-value=0.67 Score=48.83 Aligned_cols=52 Identities=15% Similarity=0.224 Sum_probs=32.8
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCC-eEEEEEeCCCCCHHHHHHHHHH
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSVGESGRFD-IIFWVNVNTDGNISDIQEIILE 228 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~-~~~wv~vs~~~~~~~i~~~i~~ 228 (984)
..-.+++|+|.+|+|||||++.....+. ..-. .++|+.... +...+...+..
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~--~~~G~~v~~~~~e~--~~~~~~~r~~~ 85 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQWG--TAMGKKVGLAMLEE--SVEETAEDLIG 85 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHH--HTSCCCEEEEESSS--CHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHH--HHcCCeEEEEeCcC--CHHHHHHHHHH
Confidence 4567999999999999999999444332 1112 456665432 44455444443
No 431
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=87.50 E-value=1.2 Score=49.69 Aligned_cols=99 Identities=13% Similarity=0.177 Sum_probs=56.1
Q ss_pred HHHHhcc-CCccEEEEEcCCCChHHHHHHH-hhhhccc----CCCCC-eEEEEEeCCCCC-HHHHHHHHHHHhcc-----
Q 001999 166 LEKHLSS-GGLKKICICGPLGVGKTTIMEN-SHDSVGE----SGRFD-IIFWVNVNTDGN-ISDIQEIILERLKV----- 232 (984)
Q Consensus 166 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~-~~~~~~~----~~~F~-~~~wv~vs~~~~-~~~i~~~i~~~l~~----- 232 (984)
.++.+.. .+-.-++|+|..|+|||+||.. ..+.... ..+-+ ..+++-+.+... +.++.+.+.+.=..
T Consensus 152 aID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvv 231 (510)
T 2ck3_A 152 AVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIV 231 (510)
T ss_dssp HHHHHSCCBTTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEE
T ss_pred eeccccccccCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceE
Confidence 4455554 4566789999999999999653 2222220 02233 477888887653 45666666542111
Q ss_pred ---Cccccch-----HHHHHHHHHHH--cCCcEEEEEECCCC
Q 001999 233 ---NAKELDN-----AQRADNISKEL--KDKRYVLFLDGVSS 264 (984)
Q Consensus 233 ---~~~~~~~-----~~~~~~l~~~L--~~kr~LlVlDdv~~ 264 (984)
..++... ....-.+.+++ +|+.+||++||+-.
T Consensus 232 V~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr 273 (510)
T 2ck3_A 232 VSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSK 273 (510)
T ss_dssp EEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHH
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHHH
Confidence 1111111 11122344444 47999999999843
No 432
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=87.43 E-value=0.79 Score=49.07 Aligned_cols=87 Identities=17% Similarity=0.182 Sum_probs=49.1
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHHHHHhccCccccchHHHHHHHHHHHcCC
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEIILERLKVNAKELDNAQRADNISKELKDK 253 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~k 253 (984)
...+++|+|+.|.|||||++.....+. . -...+.+.-......... -+.++.-.. ........|...|..+
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~~--~-~~g~i~i~~~~e~~~~~~----~~~i~~~~g--gg~~~r~~la~aL~~~ 240 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFIP--K-EERIISIEDTEEIVFKHH----KNYTQLFFG--GNITSADCLKSCLRMR 240 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGSC--T-TSCEEEEESSCCCCCSSC----SSEEEEECB--TTBCHHHHHHHHTTSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc--C-CCcEEEECCeeccccccc----hhEEEEEeC--CChhHHHHHHHHhhhC
Confidence 346899999999999999999555543 1 234555542222110000 000000000 1123344566777888
Q ss_pred cEEEEEECCCCccchh
Q 001999 254 RYVLFLDGVSSEINFK 269 (984)
Q Consensus 254 r~LlVlDdv~~~~~~~ 269 (984)
+=+|++|.....+.++
T Consensus 241 p~ilildE~~~~e~~~ 256 (330)
T 2pt7_A 241 PDRIILGELRSSEAYD 256 (330)
T ss_dssp CSEEEECCCCSTHHHH
T ss_pred CCEEEEcCCChHHHHH
Confidence 8899999998754444
No 433
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=87.39 E-value=0.27 Score=51.12 Aligned_cols=25 Identities=32% Similarity=0.396 Sum_probs=21.2
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhh
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHD 197 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~ 197 (984)
..-.+++|+|+.|.|||||++....
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHc
Confidence 4567999999999999999998433
No 434
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=87.27 E-value=0.31 Score=50.29 Aligned_cols=27 Identities=22% Similarity=0.291 Sum_probs=22.6
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhc
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSV 199 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~ 199 (984)
..-.+++|+|+.|.|||||.+......
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 566899999999999999999955443
No 435
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=87.17 E-value=0.34 Score=50.83 Aligned_cols=25 Identities=32% Similarity=0.377 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCChHHHHHHHhhhhc
Q 001999 175 LKKICICGPLGVGKTTIMENSHDSV 199 (984)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~~~~~~ 199 (984)
.++|.|+|+.|+||||||....+..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3689999999999999999976554
No 436
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=87.12 E-value=1.2 Score=44.22 Aligned_cols=27 Identities=30% Similarity=0.073 Sum_probs=23.6
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
+...|.+.|+.|+||||+++...+...
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 346899999999999999999777776
No 437
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=87.09 E-value=0.23 Score=49.30 Aligned_cols=21 Identities=29% Similarity=0.303 Sum_probs=19.1
Q ss_pred CccEEEEEcCCCChHHHHHHH
Q 001999 174 GLKKICICGPLGVGKTTIMEN 194 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~ 194 (984)
.-.+++|+|+.|.|||||++.
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~ 41 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMA 41 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 346899999999999999998
No 438
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=87.09 E-value=0.48 Score=46.22 Aligned_cols=36 Identities=25% Similarity=0.204 Sum_probs=17.8
Q ss_pred cCCCccEEeccCCCCcc-----CCcchhcccccCeEecCCC
Q 001999 542 YMCHLQLLDLHDTSIRC-----LPPSISRLINLNALFLRSC 577 (984)
Q Consensus 542 ~l~~Lr~L~L~~~~i~~-----lp~~i~~l~~L~~L~L~~c 577 (984)
.-+.|+.|+|++|.|.. +-..+..-..|++|+|++|
T Consensus 68 ~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N 108 (197)
T 1pgv_A 68 NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN 108 (197)
T ss_dssp TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS
T ss_pred hCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC
Confidence 33455666666655541 2223333445566666554
No 439
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=87.07 E-value=0.49 Score=49.44 Aligned_cols=23 Identities=17% Similarity=0.167 Sum_probs=20.3
Q ss_pred CccEEEEEcCCCChHHHHHHHhh
Q 001999 174 GLKKICICGPLGVGKTTIMENSH 196 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~ 196 (984)
.-.++.|+|.+|+|||||+....
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~ 51 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLA 51 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHH
Confidence 45799999999999999999843
No 440
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=87.07 E-value=1.4 Score=44.15 Aligned_cols=26 Identities=23% Similarity=0.365 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 175 LKKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
.-.++|.|++|+||||+|+...+...
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEKFG 33 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred ccceeeECCCCCCHHHHHHHHHHHhC
Confidence 34689999999999999998665543
No 441
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=87.05 E-value=0.48 Score=47.16 Aligned_cols=30 Identities=27% Similarity=0.421 Sum_probs=21.2
Q ss_pred EEEEEcCCCChHHHHHHHh-hhhcccCCCCCeE
Q 001999 177 KICICGPLGVGKTTIMENS-HDSVGESGRFDII 208 (984)
Q Consensus 177 vi~I~G~gGiGKTtLa~~~-~~~~~~~~~F~~~ 208 (984)
.|.+.|.||+||||+|... ....+ ..++..
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~--~G~~V~ 38 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLR--QGVRVM 38 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHH--TTCCEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHH--CCCCEE
Confidence 4778999999999998883 33333 445443
No 442
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=87.03 E-value=0.32 Score=51.49 Aligned_cols=25 Identities=28% Similarity=0.438 Sum_probs=21.7
Q ss_pred cEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 176 KKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
++|.|+|+.|+||||||+...++..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5899999999999999999776653
No 443
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=86.98 E-value=0.27 Score=49.03 Aligned_cols=27 Identities=26% Similarity=0.430 Sum_probs=22.1
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhc
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSV 199 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~ 199 (984)
..-.+++|+|+.|.|||||.+......
T Consensus 33 ~~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp ETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 355789999999999999999954443
No 444
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=86.96 E-value=0.32 Score=50.28 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=20.9
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhh
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDS 198 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~ 198 (984)
...++.+.|.||+||||++......
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~ 37 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRY 37 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHH
Confidence 4678999999999999999994433
No 445
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=86.91 E-value=0.3 Score=50.59 Aligned_cols=27 Identities=26% Similarity=0.434 Sum_probs=22.8
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhc
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSV 199 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~ 199 (984)
..-.+++|+|+.|.|||||++......
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 456799999999999999999965544
No 446
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=86.89 E-value=1.3 Score=50.16 Aligned_cols=56 Identities=18% Similarity=0.340 Sum_probs=38.9
Q ss_pred HHHHhcc-CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCC-CHHHHHHH
Q 001999 166 LEKHLSS-GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDG-NISDIQEI 225 (984)
Q Consensus 166 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~ 225 (984)
+++.|.. .+-.-++|+|..|+|||+|+++..+.. +-+..+++-+.+.. .+.++.++
T Consensus 222 vID~l~PigrGqr~~Ifgg~g~GKT~L~~~ia~~~----~~~v~V~~~iGER~~Ev~e~~~~ 279 (600)
T 3vr4_A 222 VIDTFFPVTKGGAAAVPGPFGAGKTVVQHQIAKWS----DVDLVVYVGCGERGNEMTDVVNE 279 (600)
T ss_dssp HHHHHSCCBTTCEEEEECCTTSCHHHHHHHHHHHS----SCSEEEEEEEEECHHHHHHHHHH
T ss_pred hhhccCCccCCCEEeeecCCCccHHHHHHHHHhcc----CCCEEEEEEecccHHHHHHHHHH
Confidence 4555654 566789999999999999999854442 23578888888763 33444444
No 447
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=86.88 E-value=0.34 Score=49.48 Aligned_cols=23 Identities=35% Similarity=0.411 Sum_probs=20.5
Q ss_pred CCccEEEEEcCCCChHHHHHHHh
Q 001999 173 GGLKKICICGPLGVGKTTIMENS 195 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~ 195 (984)
..-.+++|+|+.|.|||||.+..
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l 48 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLL 48 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHH
Confidence 45679999999999999999983
No 448
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=86.85 E-value=0.31 Score=49.66 Aligned_cols=27 Identities=26% Similarity=0.286 Sum_probs=22.3
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhc
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSV 199 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~ 199 (984)
..-.+++|+|+.|.|||||.+......
T Consensus 30 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 355799999999999999999955443
No 449
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=86.80 E-value=0.31 Score=50.24 Aligned_cols=27 Identities=26% Similarity=0.324 Sum_probs=22.2
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhc
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSV 199 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~ 199 (984)
..-.+++|+|+.|.|||||.+......
T Consensus 31 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356799999999999999999954443
No 450
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=86.80 E-value=0.31 Score=49.85 Aligned_cols=27 Identities=26% Similarity=0.219 Sum_probs=22.2
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhc
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSV 199 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~ 199 (984)
..-.+++|+|+.|.|||||++......
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 355799999999999999999954443
No 451
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=86.80 E-value=0.33 Score=48.60 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=21.4
Q ss_pred cEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 176 KKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
..|.|.|+.|+||||+|+...+...
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999766653
No 452
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=86.76 E-value=0.34 Score=48.74 Aligned_cols=23 Identities=39% Similarity=0.440 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHhhhhc
Q 001999 177 KICICGPLGVGKTTIMENSHDSV 199 (984)
Q Consensus 177 vi~I~G~gGiGKTtLa~~~~~~~ 199 (984)
.|.|.|+.|+||||+|+...+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999976654
No 453
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=86.74 E-value=0.35 Score=49.91 Aligned_cols=25 Identities=24% Similarity=0.232 Sum_probs=21.4
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhh
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHD 197 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~ 197 (984)
..-.+++|+|+.|.|||||.+....
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4567999999999999999998433
No 454
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=86.71 E-value=0.39 Score=48.67 Aligned_cols=26 Identities=23% Similarity=0.273 Sum_probs=22.1
Q ss_pred ccEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 175 LKKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
...|.|.|+.|+||||+|+...+...
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999766654
No 455
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=86.57 E-value=0.32 Score=49.84 Aligned_cols=25 Identities=24% Similarity=0.258 Sum_probs=21.1
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhh
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHD 197 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~ 197 (984)
..-.+++|+|+.|.|||||.+....
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3557999999999999999998433
No 456
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=86.56 E-value=0.36 Score=50.14 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=21.6
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhh
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHD 197 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~ 197 (984)
..-.+++|+|+.|.|||||++....
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhc
Confidence 5667999999999999999998443
No 457
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=86.54 E-value=0.35 Score=50.90 Aligned_cols=26 Identities=15% Similarity=0.212 Sum_probs=22.1
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhh
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDS 198 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~ 198 (984)
+.-.+++|+|+.|.|||||++.....
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhh
Confidence 56789999999999999999994433
No 458
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=86.51 E-value=0.34 Score=52.36 Aligned_cols=26 Identities=31% Similarity=0.279 Sum_probs=21.7
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhhc
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDSV 199 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 199 (984)
...+++|+|+.|+||||+++......
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 45799999999999999999944444
No 459
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=86.40 E-value=0.46 Score=50.62 Aligned_cols=26 Identities=27% Similarity=0.342 Sum_probs=21.7
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhhc
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDSV 199 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 199 (984)
...+|+|+|.+|+||||++.......
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999844444
No 460
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=86.34 E-value=0.37 Score=49.91 Aligned_cols=25 Identities=28% Similarity=0.311 Sum_probs=21.5
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhh
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHD 197 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~ 197 (984)
..-.+++|+|+.|.|||||++....
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4667999999999999999998443
No 461
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=86.33 E-value=0.35 Score=48.24 Aligned_cols=23 Identities=22% Similarity=0.206 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHhhhhc
Q 001999 177 KICICGPLGVGKTTIMENSHDSV 199 (984)
Q Consensus 177 vi~I~G~gGiGKTtLa~~~~~~~ 199 (984)
.|.|.|+.|+||||+|+...+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999966654
No 462
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=86.31 E-value=0.43 Score=48.81 Aligned_cols=28 Identities=21% Similarity=0.394 Sum_probs=23.1
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
..-.+++|+|+.|.|||||.+......+
T Consensus 24 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3557999999999999999999655553
No 463
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=86.05 E-value=0.4 Score=49.69 Aligned_cols=25 Identities=20% Similarity=0.336 Sum_probs=21.4
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhh
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHD 197 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~ 197 (984)
..-.+++|+|+.|.|||||.+....
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhC
Confidence 4567999999999999999998443
No 464
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=85.90 E-value=0.39 Score=48.51 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=21.7
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhh
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDS 198 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~ 198 (984)
....+|+|.|+.|+||||+++.....
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34579999999999999999995443
No 465
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=85.87 E-value=0.41 Score=49.42 Aligned_cols=111 Identities=14% Similarity=0.143 Sum_probs=53.7
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEE-eCCCCCHHHHHHHHHHHhccCccccchHHHHHHHHHHHc
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVN-VNTDGNISDIQEIILERLKVNAKELDNAQRADNISKELK 251 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~-vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~L~ 251 (984)
....+++|+|+.|+|||||++.....+. ..+...+++. ..-.+-.... ..+ +....-..........+.+.|.
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~--~~~~G~I~~~g~~i~~~~~~~-~~~---v~q~~~gl~~~~l~~~la~aL~ 96 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYIN--QTKSYHIITIEDPIEYVFKHK-KSI---VNQREVGEDTKSFADALRAALR 96 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHH--HHCCCEEEEEESSCCSCCCCS-SSE---EEEEEBTTTBSCHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCC--CCCCCEEEEcCCcceeecCCc-cee---eeHHHhCCCHHHHHHHHHHHHh
Confidence 4567999999999999999998433332 1112233222 1100000000 000 0000000001223445666666
Q ss_pred CCcEEEEEECCCCccchhhhccccCCCCcEEEEEcCCcc
Q 001999 252 DKRYVLFLDGVSSEINFKEIGIHDDHGRGKVVFACRSRE 290 (984)
Q Consensus 252 ~kr~LlVlDdv~~~~~~~~~~~~~~~~gs~ilvTTR~~~ 290 (984)
.++=+|++|...+.+..... +.....|.-|++||-...
T Consensus 97 ~~p~illlDEp~D~~~~~~~-l~~~~~g~~vl~t~H~~~ 134 (261)
T 2eyu_A 97 EDPDVIFVGEMRDLETVETA-LRAAETGHLVFGTLHTNT 134 (261)
T ss_dssp HCCSEEEESCCCSHHHHHHH-HHHHHTTCEEEEEECCSS
T ss_pred hCCCEEEeCCCCCHHHHHHH-HHHHccCCEEEEEeCcch
Confidence 67778889998754333222 111124666777775543
No 466
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=85.87 E-value=0.24 Score=52.10 Aligned_cols=25 Identities=20% Similarity=0.303 Sum_probs=18.4
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhh
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDS 198 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~ 198 (984)
+..+|+|.|..|+||||+|+...+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999995554
No 467
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=85.75 E-value=9.8 Score=41.00 Aligned_cols=21 Identities=29% Similarity=0.578 Sum_probs=19.4
Q ss_pred CccEEEEEcCCCChHHHHHHH
Q 001999 174 GLKKICICGPLGVGKTTIMEN 194 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~ 194 (984)
....|+|+|.+|+|||||...
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~ 186 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKA 186 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 567899999999999999998
No 468
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=85.73 E-value=0.37 Score=47.01 Aligned_cols=21 Identities=33% Similarity=0.597 Sum_probs=18.7
Q ss_pred ccEEEEEcCCCChHHHHHHHh
Q 001999 175 LKKICICGPLGVGKTTIMENS 195 (984)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~~ 195 (984)
.-.|+|+|..|+|||||.+..
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l 49 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRF 49 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHH
Confidence 457899999999999999983
No 469
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=85.71 E-value=0.42 Score=50.01 Aligned_cols=27 Identities=26% Similarity=0.300 Sum_probs=22.6
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
..++|.|+|+.|+||||||....+...
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCC
Confidence 356899999999999999999766643
No 470
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=85.63 E-value=0.38 Score=49.40 Aligned_cols=26 Identities=19% Similarity=0.279 Sum_probs=21.6
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhh
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDS 198 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~ 198 (984)
..-.+++|+|+.|.|||||.+.....
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHHHHHTTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35579999999999999999994443
No 471
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=85.62 E-value=0.41 Score=45.34 Aligned_cols=20 Identities=35% Similarity=0.508 Sum_probs=18.0
Q ss_pred cEEEEEcCCCChHHHHHHHh
Q 001999 176 KKICICGPLGVGKTTIMENS 195 (984)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~~ 195 (984)
..|+|+|.+|+|||||.+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l 23 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNAL 23 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999983
No 472
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=85.56 E-value=0.38 Score=50.12 Aligned_cols=27 Identities=26% Similarity=0.244 Sum_probs=22.7
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhc
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSV 199 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~ 199 (984)
..-.+++|+|+.|.|||||.+......
T Consensus 45 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 456799999999999999999955544
No 473
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=85.53 E-value=0.37 Score=46.59 Aligned_cols=20 Identities=40% Similarity=0.642 Sum_probs=17.6
Q ss_pred EEEEEcCCCChHHHHHHHhh
Q 001999 177 KICICGPLGVGKTTIMENSH 196 (984)
Q Consensus 177 vi~I~G~gGiGKTtLa~~~~ 196 (984)
-|+|+|.+|+|||||++...
T Consensus 4 kv~ivG~~gvGKStLl~~l~ 23 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLM 23 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47899999999999999843
No 474
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=85.43 E-value=0.7 Score=52.38 Aligned_cols=47 Identities=15% Similarity=0.058 Sum_probs=35.6
Q ss_pred CCCCchHHHHHHHHHHhc--cCCccEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 154 SKFPSHKEYVETLEKHLS--SGGLKKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 154 ~~~vgr~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
++-+.|.+..+.+.+... .....+|.+.|+.|+||||+|+...++..
T Consensus 372 P~~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 372 PEWFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp CTTTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred CccccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHH
Confidence 345666666666666652 24557999999999999999999888775
No 475
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=85.39 E-value=0.76 Score=44.58 Aligned_cols=22 Identities=32% Similarity=0.456 Sum_probs=19.3
Q ss_pred CCccEEEEEcCCCChHHHHHHH
Q 001999 173 GGLKKICICGPLGVGKTTIMEN 194 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~ 194 (984)
.....|+|+|.+|+|||||...
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~ 67 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTL 67 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHH
Confidence 3456889999999999999998
No 476
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=85.34 E-value=1.2 Score=50.27 Aligned_cols=41 Identities=22% Similarity=0.373 Sum_probs=29.8
Q ss_pred chHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHhhhhc
Q 001999 158 SHKEYVETLEKHLSSGGLKKICICGPLGVGKTTIMENSHDSV 199 (984)
Q Consensus 158 gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~ 199 (984)
+..+.++.+.+++.+.+ +.+.|.|.+|+||||++......+
T Consensus 29 ~Q~~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 29 GQKNAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp HHHHHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHH
Confidence 44556666666666543 489999999999999999844443
No 477
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=85.32 E-value=0.38 Score=50.82 Aligned_cols=24 Identities=29% Similarity=0.456 Sum_probs=21.2
Q ss_pred CCccEEEEEcCCCChHHHHHHHhh
Q 001999 173 GGLKKICICGPLGVGKTTIMENSH 196 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~ 196 (984)
..-.+++|+|+.|.|||||++...
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~ 101 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLF 101 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHT
T ss_pred cCCCEEEEECCCCchHHHHHHHHH
Confidence 567899999999999999999843
No 478
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=85.27 E-value=3.1 Score=48.38 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=20.4
Q ss_pred CCccEEEEEcCCCChHHHHHHHh
Q 001999 173 GGLKKICICGPLGVGKTTIMENS 195 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~ 195 (984)
..-.+++|+|+.|+|||||.+..
T Consensus 101 ~~Gei~~LvGpNGaGKSTLLkiL 123 (608)
T 3j16_B 101 RPGQVLGLVGTNGIGKSTALKIL 123 (608)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHH
T ss_pred CCCCEEEEECCCCChHHHHHHHH
Confidence 35679999999999999999983
No 479
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=85.15 E-value=0.52 Score=47.80 Aligned_cols=28 Identities=29% Similarity=0.369 Sum_probs=23.3
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
....+|+|.|+.|+||||+++...+...
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3567899999999999999999766543
No 480
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=85.02 E-value=3.4 Score=46.24 Aligned_cols=53 Identities=8% Similarity=-0.112 Sum_probs=35.3
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEIILER 229 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~ 229 (984)
...++.|.|.+|+||||+|......+.. ..=..++|++.. .+...+...++..
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~-~~g~~vl~~slE--~~~~~l~~R~~~~ 251 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAAL-KEGVGVGIYSLE--MPAAQLTLRMMCS 251 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHH-TTCCCEEEEESS--SCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH-hCCCeEEEEECC--CCHHHHHHHHHHH
Confidence 4579999999999999999984333321 111246776654 4666777776543
No 481
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=84.82 E-value=0.6 Score=47.51 Aligned_cols=47 Identities=13% Similarity=0.165 Sum_probs=30.5
Q ss_pred CccEEEEEcCCCChHHHHHHHh-hhhcccCCCCCeEEEEEeCCCCCHHHHHHH
Q 001999 174 GLKKICICGPLGVGKTTIMENS-HDSVGESGRFDIIFWVNVNTDGNISDIQEI 225 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~-~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~ 225 (984)
.-.++.|.|.+|+||||||.+. ....+ . =..++|++... ....+.+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~--~-~~~v~~~~~e~--~~~~~~~~ 69 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLK--M-GEPGIYVALEE--HPVQVRQN 69 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHH--T-TCCEEEEESSS--CHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh--c-CCeEEEEEccC--CHHHHHHH
Confidence 4579999999999999999873 33332 1 13577776544 34444333
No 482
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=84.81 E-value=0.42 Score=46.91 Aligned_cols=20 Identities=30% Similarity=0.561 Sum_probs=17.9
Q ss_pred cEEEEEcCCCChHHHHHHHh
Q 001999 176 KKICICGPLGVGKTTIMENS 195 (984)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~~ 195 (984)
-.|+|+|..|+|||||.+..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l 25 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRF 25 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHH
Confidence 46899999999999999983
No 483
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=84.81 E-value=0.54 Score=51.83 Aligned_cols=31 Identities=16% Similarity=0.443 Sum_probs=23.6
Q ss_pred HHHHHhcc--CCccEEEEEcCCCChHHHHHHHh
Q 001999 165 TLEKHLSS--GGLKKICICGPLGVGKTTIMENS 195 (984)
Q Consensus 165 ~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~~ 195 (984)
++.+.|.. ....+++|+|..|+|||||.+..
T Consensus 57 ~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L 89 (413)
T 1tq4_A 57 AISDALKEIDSSVLNVAVTGETGSGKSSFINTL 89 (413)
T ss_dssp HHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHH
T ss_pred hhhhhhhhcccCCeEEEEECCCCCcHHHHHHHH
Confidence 34444433 45679999999999999999983
No 484
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=84.65 E-value=2.6 Score=51.51 Aligned_cols=124 Identities=15% Similarity=0.205 Sum_probs=67.7
Q ss_pred CCccEEEEEcCCCChHHHHHHHhh-hhccc---CCCCCeEEEEEeCCCC-------CH-----------HHHHHHHHHHh
Q 001999 173 GGLKKICICGPLGVGKTTIMENSH-DSVGE---SGRFDIIFWVNVNTDG-------NI-----------SDIQEIILERL 230 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~-~~~~~---~~~F~~~~wv~vs~~~-------~~-----------~~i~~~i~~~l 230 (984)
....+++|+|+.|.|||||.+... ..+.. .... .+. .+.+.. ++ ..-..++++.+
T Consensus 459 ~~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~-~~~--~v~q~~~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~l 535 (986)
T 2iw3_A 459 KRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEEC-RTV--YVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEF 535 (986)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTS-CEE--ETTCCCCCCCTTSBHHHHHHTTCSSCHHHHHHHHHHT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCcCCCccccce-eEE--EEcccccccccCCcHHHHHHHhhcCHHHHHHHHHHHc
Confidence 456799999999999999999943 22210 0011 122 223221 11 22334556666
Q ss_pred ccCc-------cccch-HHHHHHHHHHHcCCcEEEEEECCCCccchhhh-----ccccCCCCcEEEEEcCCccccc-cCC
Q 001999 231 KVNA-------KELDN-AQRADNISKELKDKRYVLFLDGVSSEINFKEI-----GIHDDHGRGKVVFACRSREFCW-QAD 296 (984)
Q Consensus 231 ~~~~-------~~~~~-~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~-----~~~~~~~gs~ilvTTR~~~v~~-~~~ 296 (984)
+... ...+. +...-.|.+.+-.+.=+|+||.--+..|.... .+.. .|..||++|-+..... -+.
T Consensus 536 gL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~~ad 613 (986)
T 2iw3_A 536 GFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNVCE 613 (986)
T ss_dssp TCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHHCS
T ss_pred CCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhCC
Confidence 6521 11122 44445567777788889999997664332211 1223 4677888887765443 333
Q ss_pred ceEEc
Q 001999 297 DVIHV 301 (984)
Q Consensus 297 ~~~~l 301 (984)
..+.+
T Consensus 614 rii~L 618 (986)
T 2iw3_A 614 YIINY 618 (986)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 44443
No 485
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=84.42 E-value=0.87 Score=47.10 Aligned_cols=24 Identities=29% Similarity=0.570 Sum_probs=19.8
Q ss_pred cEEEEEcCCCChHHHHHHHhhhhc
Q 001999 176 KKICICGPLGVGKTTIMENSHDSV 199 (984)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~~~~~~ 199 (984)
++|+|.|.||+||||+|.......
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~l 25 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGL 25 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cEEEEecCCCCcHHHHHHHHHHHH
Confidence 578889999999999999844443
No 486
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=84.39 E-value=0.51 Score=44.09 Aligned_cols=19 Identities=32% Similarity=0.641 Sum_probs=17.5
Q ss_pred cEEEEEcCCCChHHHHHHH
Q 001999 176 KKICICGPLGVGKTTIMEN 194 (984)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~ 194 (984)
+-|.|+|.+|+|||||+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~ 20 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNR 20 (161)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 4689999999999999998
No 487
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=84.31 E-value=0.46 Score=50.25 Aligned_cols=23 Identities=30% Similarity=0.235 Sum_probs=20.2
Q ss_pred cEEEEEcCCCChHHHHHHHhhhh
Q 001999 176 KKICICGPLGVGKTTIMENSHDS 198 (984)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~~~~~ 198 (984)
.+|.|.|++|+||||+|+...++
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999996654
No 488
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=84.23 E-value=0.48 Score=55.31 Aligned_cols=46 Identities=26% Similarity=0.265 Sum_probs=32.2
Q ss_pred CCCCchHHHHHHHHHHhccCCcc-----------EEEEEcCCCChHHHHHHHhhhhc
Q 001999 154 SKFPSHKEYVETLEKHLSSGGLK-----------KICICGPLGVGKTTIMENSHDSV 199 (984)
Q Consensus 154 ~~~vgr~~~~~~l~~~L~~~~~~-----------vi~I~G~gGiGKTtLa~~~~~~~ 199 (984)
+.++|.+..+..+.-.|.....+ -|.++|++|+|||+||+......
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 44678887666665444433211 57899999999999999966554
No 489
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=84.22 E-value=0.49 Score=48.84 Aligned_cols=23 Identities=39% Similarity=0.579 Sum_probs=20.2
Q ss_pred ccEEEEEcCCCChHHHHHHHhhh
Q 001999 175 LKKICICGPLGVGKTTIMENSHD 197 (984)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~~~~ 197 (984)
-.+++|+|+.|.|||||.+....
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHhC
Confidence 56999999999999999999443
No 490
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=84.17 E-value=0.52 Score=49.36 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=21.6
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhh
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHD 197 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~ 197 (984)
....+++|+|+.|.|||||.+....
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk~l~G 86 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLMMIMG 86 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhc
Confidence 4667999999999999999999443
No 491
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=84.10 E-value=1.2 Score=49.19 Aligned_cols=29 Identities=24% Similarity=0.355 Sum_probs=23.6
Q ss_pred cCCccEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 172 SGGLKKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 172 ~~~~~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
.....+++|+|+.|.||||+.+.....+.
T Consensus 164 ~~~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 164 KRPHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp TSSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred HhcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 45667999999999999999999555443
No 492
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=84.05 E-value=0.58 Score=47.64 Aligned_cols=26 Identities=23% Similarity=0.397 Sum_probs=22.2
Q ss_pred ccEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 175 LKKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
...|+|.|..|+||||+++...+..+
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 35799999999999999999776653
No 493
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=83.94 E-value=0.52 Score=45.78 Aligned_cols=25 Identities=24% Similarity=0.161 Sum_probs=20.8
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhh
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDS 198 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~ 198 (984)
.-+.|.|.|+.|+||||||....++
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3467899999999999999985544
No 494
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=83.70 E-value=0.53 Score=49.47 Aligned_cols=24 Identities=29% Similarity=0.501 Sum_probs=19.9
Q ss_pred ccEEEEEcCCCChHHHHHHHhhhh
Q 001999 175 LKKICICGPLGVGKTTIMENSHDS 198 (984)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~~~~~ 198 (984)
.++|+|.|.||+||||+|......
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~ 25 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAA 25 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHH
Confidence 368899999999999999984433
No 495
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=83.59 E-value=0.5 Score=44.26 Aligned_cols=18 Identities=33% Similarity=0.624 Sum_probs=16.7
Q ss_pred EEEEEcCCCChHHHHHHH
Q 001999 177 KICICGPLGVGKTTIMEN 194 (984)
Q Consensus 177 vi~I~G~gGiGKTtLa~~ 194 (984)
-|.++|.+|+|||||+..
T Consensus 5 ~i~v~G~~~~GKssl~~~ 22 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQ 22 (166)
T ss_dssp EEEEEESTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999999998
No 496
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=83.49 E-value=0.51 Score=48.82 Aligned_cols=27 Identities=30% Similarity=0.414 Sum_probs=23.1
Q ss_pred CccEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 174 GLKKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
+...|+|.|..|+||||+|+...+...
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 557999999999999999998766653
No 497
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=83.45 E-value=0.59 Score=50.92 Aligned_cols=28 Identities=25% Similarity=0.318 Sum_probs=23.2
Q ss_pred CCccEEEEEcCCCChHHHHHHHhhhhcc
Q 001999 173 GGLKKICICGPLGVGKTTIMENSHDSVG 200 (984)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~ 200 (984)
....+++|+|+.|.|||||++.......
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~~ 194 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELCG 194 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 5567999999999999999999555443
No 498
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=83.34 E-value=0.54 Score=44.26 Aligned_cols=19 Identities=26% Similarity=0.557 Sum_probs=17.2
Q ss_pred cEEEEEcCCCChHHHHHHH
Q 001999 176 KKICICGPLGVGKTTIMEN 194 (984)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~ 194 (984)
--|.|+|.+|+|||||+..
T Consensus 6 ~~i~v~G~~~~GKssl~~~ 24 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQR 24 (168)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHH
Confidence 3578999999999999998
No 499
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=83.29 E-value=4.5 Score=55.73 Aligned_cols=201 Identities=13% Similarity=0.155 Sum_probs=0.0
Q ss_pred EEEEcCCCChHHHHHHHhhhhcccCCCCCeEEEEEeCCCCCHHHHHHHHHHHhc-------cCccccchHHHHHHHHHHH
Q 001999 178 ICICGPLGVGKTTIMENSHDSVGESGRFDIIFWVNVNTDGNISDIQEIILERLK-------VNAKELDNAQRADNISKEL 250 (984)
Q Consensus 178 i~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~-------~~~~~~~~~~~~~~l~~~L 250 (984)
|-++|+.|+|||++++..-.... + ...+.++.|...+...++..+-..+. +......
T Consensus 1307 vLL~GptGtGKT~li~~~L~~l~--~--~~~~~infS~~Tta~~l~~~~e~~~e~~~~~~~G~~~~p~------------ 1370 (3245)
T 3vkg_A 1307 LILCGPPGSGKTMTLTSTLRAFP--D--FEVVSLNFSSATTPELLLKTFDHHCEYKRTPSGETVLRPT------------ 1370 (3245)
T ss_dssp CEEESSTTSSHHHHHHHHGGGCT--T--EEEEEECCCTTCCHHHHHHHHHHHEEEEECTTSCEEEEES------------
T ss_pred EEEECCCCCCHHHHHHHHHHhCC--C--CceEEEEeeCCCCHHHHHHHHhhcceEEeccCCCcccCCC------------
Q ss_pred c-CCcEEEEEECCCCcc-----------------chhhhccc-----cCCCCcEEEEEcCCcc------ccc---cCCce
Q 001999 251 K-DKRYVLFLDGVSSEI-----------------NFKEIGIH-----DDHGRGKVVFACRSRE------FCW---QADDV 298 (984)
Q Consensus 251 ~-~kr~LlVlDdv~~~~-----------------~~~~~~~~-----~~~~gs~ilvTTR~~~------v~~---~~~~~ 298 (984)
+ ||+.++++||+--.. +...+..+ ....+..+|.|.--.. +.. .....
T Consensus 1371 ~~Gk~~VlFiDDiNmp~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r~F~v 1450 (3245)
T 3vkg_A 1371 QLGKWLVVFCDEINLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHAPI 1450 (3245)
T ss_dssp STTCEEEEEETTTTCCCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHTTCCE
T ss_pred cCCceEEEEecccCCCCccccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHhhceE
Q ss_pred EEccCCChHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHcCCCchHHHHHHHHhhcCccHHHHHHHHHHhhcCCcccccc
Q 001999 299 IHVERLSPREAKKLFWEVVGVNLKKNPDIEQEADSIVEECGGMPYMLKLIGKELVNQSEVAIWRATVDDLRSTSSEEKKE 378 (984)
Q Consensus 299 ~~l~~L~~~~~~~Lf~~~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~~~~~l~~~~~~~~w~~~l~~l~~~~~~~~~~ 378 (984)
+.+...+.++-..+|......-....+.+...+..+++. ..+-|..+...+.....
T Consensus 1451 i~i~~ps~esL~~If~til~~~l~~~p~l~~~~~~lv~a-------------------ti~ly~~v~~~~lp~~k----- 1506 (3245)
T 3vkg_A 1451 LLVDFPSTSSLTQIYGTFNRALMKLLPNLRSFADNLTDA-------------------MVEFYSESQKRFTPDIQ----- 1506 (3245)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHTTSCGGGTTSHHHHHHH-------------------HHHHHHHHHHHSCTTTS-----
T ss_pred EEeCCCCHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHH-------------------HHHHHHHHHHhcCCCcC-----
Q ss_pred HHHHHHHHHHHHh-cChHHHHHHHhhhcccCCCCccCHHHHHHHHhhcCC
Q 001999 379 LEEVYRFFKLVYK-NLSSVQQHCLLGWAIFPTGLEISQDYIIDCWAAQKF 427 (984)
Q Consensus 379 ~~~i~~~l~~sy~-~L~~~~k~cfl~~s~fp~~~~i~~~~Li~~W~aeg~ 427 (984)
.-|- .|.+=.|-|-..|-..+.......+.++++|+=|++
T Consensus 1507 ---------~HY~FnLRDLsrv~qGll~~~~~~~~~~~~~lvrLW~HE~~ 1547 (3245)
T 3vkg_A 1507 ---------AHYIYSPRELSRWDRALLEAIQTMDGCTLEGLVRLWAHEAL 1547 (3245)
T ss_dssp ---------TTCCCCHHHHHHHHHHHHHHHHTSSCCCTTHHHHHHHHHHH
T ss_pred ---------CCccccHHHHHHHHHHHHHhcCccccCCHHHHHHHHHHHHH
No 500
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=83.10 E-value=1.3 Score=47.27 Aligned_cols=30 Identities=33% Similarity=0.326 Sum_probs=23.4
Q ss_pred hccCCccEEEEEcCCCChHHHHHHHhhhhc
Q 001999 170 LSSGGLKKICICGPLGVGKTTIMENSHDSV 199 (984)
Q Consensus 170 L~~~~~~vi~I~G~gGiGKTtLa~~~~~~~ 199 (984)
+.+...+++.+.|.||+||||+|.......
T Consensus 11 l~~~~~~i~~~sgkGGvGKTt~a~~lA~~l 40 (334)
T 3iqw_A 11 LDQRSLRWIFVGGKGGVGKTTTSCSLAIQL 40 (334)
T ss_dssp HHCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hcCCCeEEEEEeCCCCccHHHHHHHHHHHH
Confidence 344557888999999999999999844444
Done!