Query 002000
Match_columns 983
No_of_seqs 426 out of 1936
Neff 4.9
Searched_HMMs 46136
Date Thu Mar 28 14:15:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002000.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002000hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1246 ArgA N-acetylglutamate 99.2 1.5E-11 3.2E-16 123.2 6.4 90 847-940 38-128 (153)
2 KOG0956 PHD finger protein AF1 99.0 1.3E-10 2.8E-15 135.5 4.2 150 603-760 4-187 (900)
3 PRK10314 putative acyltransfer 99.0 1.2E-09 2.5E-14 109.6 10.0 81 855-936 52-135 (153)
4 PF13508 Acetyltransf_7: Acety 99.0 2.7E-09 5.8E-14 94.3 11.0 77 851-932 3-79 (79)
5 PF00583 Acetyltransf_1: Acety 99.0 4.2E-09 9E-14 92.2 9.9 74 857-931 2-83 (83)
6 KOG1244 Predicted transcriptio 98.9 2.4E-10 5.1E-15 122.0 0.9 92 603-751 223-329 (336)
7 PF13673 Acetyltransf_10: Acet 98.9 1.1E-08 2.4E-13 95.0 10.6 74 851-930 44-117 (117)
8 KOG4323 Polycomb-like PHD Zn-f 98.9 1.3E-09 2.8E-14 125.1 5.2 202 603-822 82-301 (464)
9 KOG1512 PHD Zn-finger protein 98.8 1.6E-09 3.5E-14 116.2 1.0 92 602-751 256-361 (381)
10 PTZ00330 acetyltransferase; Pr 98.8 5E-08 1.1E-12 94.4 10.7 83 852-935 53-141 (147)
11 PRK10146 aminoalkylphosphonic 98.7 5.4E-08 1.2E-12 93.8 8.9 80 854-934 50-137 (144)
12 PLN02706 glucosamine 6-phospha 98.7 9E-08 1.9E-12 93.6 10.5 82 852-934 54-143 (150)
13 cd02169 Citrate_lyase_ligase C 98.7 5.8E-08 1.3E-12 107.8 9.7 75 854-934 9-83 (297)
14 PRK07922 N-acetylglutamate syn 98.7 8E-08 1.7E-12 97.8 9.9 79 854-935 48-127 (169)
15 PLN02825 amino-acid N-acetyltr 98.7 9E-08 2E-12 113.1 11.5 89 854-944 410-499 (515)
16 PF13527 Acetyltransf_9: Acety 98.6 1.8E-07 4E-12 88.6 10.9 111 810-933 10-127 (127)
17 PRK07757 acetyltransferase; Pr 98.6 1.2E-07 2.5E-12 93.0 9.6 81 855-938 45-125 (152)
18 COG5141 PHD zinc finger-contai 98.6 9.8E-09 2.1E-13 116.6 1.8 123 601-737 190-342 (669)
19 PRK03624 putative acetyltransf 98.6 1.4E-07 3.1E-12 89.1 8.8 83 852-936 46-131 (140)
20 TIGR01890 N-Ac-Glu-synth amino 98.6 2.8E-07 6E-12 106.9 11.2 85 855-941 326-411 (429)
21 PF15446 zf-PHD-like: PHD/FYVE 98.5 7.4E-08 1.6E-12 97.6 5.0 51 606-656 1-67 (175)
22 COG2153 ElaA Predicted acyltra 98.5 2.5E-07 5.5E-12 92.1 8.4 117 804-937 16-138 (155)
23 TIGR00124 cit_ly_ligase [citra 98.5 3E-07 6.4E-12 103.7 9.6 81 850-936 30-110 (332)
24 PRK10975 TDP-fucosamine acetyl 98.5 5E-07 1.1E-11 93.1 9.9 85 850-935 101-188 (194)
25 TIGR01575 rimI ribosomal-prote 98.5 6.4E-07 1.4E-11 83.9 9.8 80 854-935 34-116 (131)
26 TIGR02382 wecD_rffC TDP-D-fuco 98.5 6.1E-07 1.3E-11 92.4 9.8 80 855-935 103-185 (191)
27 PRK05279 N-acetylglutamate syn 98.5 5.7E-07 1.2E-11 104.5 10.5 85 854-940 337-422 (441)
28 PRK12308 bifunctional arginino 98.4 7E-07 1.5E-11 108.0 10.0 82 854-938 506-587 (614)
29 PRK09491 rimI ribosomal-protei 98.4 1.7E-06 3.6E-11 84.5 10.7 84 850-935 39-125 (146)
30 KOG4299 PHD Zn-finger protein 98.4 1.6E-07 3.4E-12 110.5 3.8 46 604-649 253-305 (613)
31 TIGR03827 GNAT_ablB putative b 98.4 1E-06 2.3E-11 95.7 9.4 84 851-935 158-245 (266)
32 KOG0955 PHD finger protein BR1 98.4 1.7E-07 3.6E-12 117.0 3.4 123 600-735 215-367 (1051)
33 KOG0825 PHD Zn-finger protein 98.3 1E-07 2.2E-12 113.0 0.5 132 604-752 123-265 (1134)
34 KOG4299 PHD Zn-finger protein 98.3 2.5E-07 5.3E-12 108.9 3.4 50 694-752 255-304 (613)
35 PRK10140 putative acetyltransf 98.3 2.9E-06 6.3E-11 83.1 10.0 85 851-937 51-143 (162)
36 PRK13688 hypothetical protein; 98.3 2.2E-06 4.7E-11 87.0 8.9 76 855-936 49-134 (156)
37 PHA00673 acetyltransferase dom 98.3 4.4E-06 9.6E-11 84.8 10.7 84 851-935 55-146 (154)
38 PRK09831 putative acyltransfer 98.3 2.1E-06 4.5E-11 84.5 8.2 73 854-937 56-128 (147)
39 KOG1512 PHD Zn-finger protein 98.3 1.7E-07 3.8E-12 100.9 0.6 91 534-647 267-361 (381)
40 KOG1244 Predicted transcriptio 98.3 1.4E-07 3E-12 101.2 -0.2 85 543-650 243-332 (336)
41 KOG3396 Glucosamine-phosphate 98.3 2.3E-06 5.1E-11 84.4 7.6 84 851-935 53-144 (150)
42 KOG0954 PHD finger protein [Ge 98.2 6.5E-07 1.4E-11 106.2 2.8 144 602-755 269-441 (893)
43 KOG0383 Predicted helicase [Ge 98.2 7.9E-07 1.7E-11 107.5 2.8 155 621-817 1-162 (696)
44 KOG3139 N-acetyltransferase [G 98.1 1.1E-05 2.5E-10 81.8 10.0 73 862-935 68-146 (165)
45 TIGR03448 mycothiol_MshD mycot 98.1 1E-05 2.2E-10 88.0 10.5 81 852-935 47-128 (292)
46 KOG4443 Putative transcription 98.1 8.7E-07 1.9E-11 104.6 1.9 89 603-747 17-113 (694)
47 TIGR03448 mycothiol_MshD mycot 98.1 9.5E-06 2.1E-10 88.2 9.7 85 850-935 199-288 (292)
48 TIGR02406 ectoine_EctA L-2,4-d 98.1 1.4E-05 2.9E-10 80.3 9.0 83 852-935 40-128 (157)
49 COG0456 RimI Acetyltransferase 98.1 1.8E-05 4E-10 78.8 9.5 76 861-937 72-156 (177)
50 PF13420 Acetyltransf_4: Acety 98.0 3.3E-05 7.1E-10 75.6 10.8 76 858-935 58-139 (155)
51 TIGR03103 trio_acet_GNAT GNAT- 98.0 1.7E-05 3.6E-10 95.1 10.2 85 850-935 122-217 (547)
52 PHA01807 hypothetical protein 98.0 1.6E-05 3.5E-10 80.6 8.0 75 852-926 54-135 (153)
53 cd04301 NAT_SF N-Acyltransfera 98.0 2.7E-05 5.8E-10 62.3 7.8 61 854-914 2-64 (65)
54 PRK01346 hypothetical protein; 98.0 2.8E-05 6.1E-10 89.2 10.1 80 853-935 49-136 (411)
55 PF08445 FR47: FR47-like prote 97.9 5.5E-05 1.2E-09 69.3 8.6 75 859-935 6-82 (86)
56 PRK10562 putative acetyltransf 97.9 5.1E-05 1.1E-09 74.2 8.6 76 854-936 51-126 (145)
57 PRK10514 putative acetyltransf 97.9 5.7E-05 1.2E-09 73.2 8.8 73 857-937 56-128 (145)
58 PRK15130 spermidine N1-acetylt 97.9 8E-05 1.7E-09 75.7 10.2 81 853-935 59-145 (186)
59 TIGR01686 FkbH FkbH-like domai 97.8 6.4E-05 1.4E-09 84.1 9.8 82 850-933 230-319 (320)
60 PF13523 Acetyltransf_8: Acety 97.8 0.00011 2.4E-09 72.2 10.3 86 849-935 46-141 (152)
61 PF00628 PHD: PHD-finger; Int 97.8 4.2E-06 9.2E-11 69.0 -0.2 48 695-751 2-49 (51)
62 KOG0383 Predicted helicase [Ge 97.8 9E-06 2E-10 98.6 2.3 49 601-649 44-94 (696)
63 TIGR03585 PseH pseudaminic aci 97.7 0.0002 4.4E-09 70.0 10.4 80 855-937 55-140 (156)
64 smart00249 PHD PHD zinc finger 97.7 3E-05 6.5E-10 61.3 3.6 44 695-747 2-45 (47)
65 PF13718 GNAT_acetyltr_2: GNAT 97.7 0.00023 5.1E-09 75.0 10.7 88 847-935 23-176 (196)
66 KOG1473 Nucleosome remodeling 97.7 8.9E-06 1.9E-10 100.2 0.2 130 601-755 341-481 (1414)
67 TIGR01211 ELP3 histone acetylt 97.7 0.0001 2.2E-09 87.9 9.0 77 858-935 421-516 (522)
68 COG3153 Predicted acetyltransf 97.7 0.00013 2.9E-09 75.4 8.6 136 808-963 12-152 (171)
69 COG3393 Predicted acetyltransf 97.7 0.00012 2.7E-09 79.6 8.6 84 851-935 177-262 (268)
70 PRK10809 ribosomal-protein-S5- 97.6 0.00028 6.1E-09 72.3 9.6 83 851-935 77-166 (194)
71 PF00628 PHD: PHD-finger; Int 97.6 2.3E-05 5.1E-10 64.6 0.8 43 606-648 1-50 (51)
72 PF13302 Acetyltransf_3: Acety 97.5 0.00074 1.6E-08 64.6 10.5 80 850-931 55-142 (142)
73 COG1247 Sortase and related ac 97.5 0.00061 1.3E-08 70.4 10.0 115 843-963 44-166 (169)
74 PRK10151 ribosomal-protein-L7/ 97.4 0.00086 1.9E-08 67.8 10.5 78 857-936 73-156 (179)
75 KOG4443 Putative transcription 97.4 3.5E-05 7.6E-10 91.5 0.5 128 604-751 68-200 (694)
76 smart00249 PHD PHD zinc finger 97.4 0.0001 2.2E-09 58.2 2.8 41 606-646 1-47 (47)
77 KOG3397 Acetyltransferases [Ge 97.4 0.00032 6.9E-09 72.1 6.2 77 859-937 65-143 (225)
78 smart00258 SAND SAND domain. 97.1 0.00027 5.8E-09 63.5 2.0 62 528-590 5-68 (73)
79 KOG0957 PHD finger protein [Ge 97.0 0.0003 6.5E-09 81.2 2.1 125 604-733 119-277 (707)
80 KOG3216 Diamine acetyltransfer 96.9 0.01 2.2E-07 60.4 12.1 123 805-935 15-146 (163)
81 KOG0825 PHD Zn-finger protein 96.9 0.00035 7.5E-09 84.1 1.9 46 603-648 214-265 (1134)
82 KOG1973 Chromatin remodeling p 96.9 0.00038 8.3E-09 76.9 1.6 42 606-648 223-267 (274)
83 COG5034 TNG2 Chromatin remodel 96.9 0.00046 1E-08 74.5 2.0 44 694-752 223-269 (271)
84 KOG1973 Chromatin remodeling p 96.8 0.00043 9.3E-09 76.5 1.5 37 709-752 228-267 (274)
85 PF01342 SAND: SAND domain; I 96.6 0.00025 5.5E-09 65.1 -1.9 64 527-591 12-78 (82)
86 KOG0957 PHD finger protein [Ge 96.5 0.0011 2.3E-08 76.9 1.5 46 694-750 546-595 (707)
87 COG5034 TNG2 Chromatin remodel 96.4 0.0013 2.9E-08 71.0 1.6 45 603-648 220-269 (271)
88 PF08444 Gly_acyl_tr_C: Aralky 96.4 0.006 1.3E-07 57.0 5.4 75 855-934 3-79 (89)
89 PF14542 Acetyltransf_CG: GCN5 96.2 0.031 6.6E-07 50.8 9.0 58 855-913 3-60 (78)
90 COG3053 CitC Citrate lyase syn 96.2 0.017 3.7E-07 64.0 8.6 79 851-935 37-115 (352)
91 PF12746 GNAT_acetyltran: GNAT 96.2 0.028 6.1E-07 62.2 10.4 76 857-934 171-246 (265)
92 PF12568 DUF3749: Acetyltransf 96.2 0.036 7.7E-07 55.1 9.9 82 849-935 38-125 (128)
93 COG1444 Predicted P-loop ATPas 96.1 0.0074 1.6E-07 74.5 5.7 58 876-935 532-591 (758)
94 COG0454 WecD Histone acetyltra 96.0 0.0082 1.8E-07 50.8 4.2 44 881-930 87-130 (156)
95 COG2388 Predicted acetyltransf 96.0 0.016 3.5E-07 55.2 6.3 61 849-911 15-75 (99)
96 PF13831 PHD_2: PHD-finger; PD 95.9 0.0012 2.7E-08 51.7 -1.1 34 614-647 2-36 (36)
97 KOG2488 Acetyltransferase (GNA 95.9 0.022 4.8E-07 59.8 7.5 84 851-935 93-182 (202)
98 KOG4144 Arylalkylamine N-acety 95.8 0.0069 1.5E-07 61.6 3.0 61 874-935 100-161 (190)
99 COG1670 RimL Acetyltransferase 95.6 0.064 1.4E-06 53.0 9.4 88 849-938 64-161 (187)
100 KOG0955 PHD finger protein BR1 95.4 0.01 2.2E-07 75.5 3.2 52 692-754 219-270 (1051)
101 cd04718 BAH_plant_2 BAH, or Br 95.1 0.01 2.2E-07 60.3 1.6 26 722-752 1-26 (148)
102 cd04718 BAH_plant_2 BAH, or Br 95.1 0.012 2.6E-07 59.7 2.0 25 625-649 1-27 (148)
103 KOG3138 Predicted N-acetyltran 95.0 0.021 4.5E-07 60.2 3.7 62 875-937 89-154 (187)
104 KOG1245 Chromatin remodeling c 95.0 0.0067 1.5E-07 79.6 0.1 56 691-757 1107-1162(1404)
105 KOG0956 PHD finger protein AF1 94.9 0.013 2.8E-07 70.5 1.9 50 692-752 5-56 (900)
106 KOG3234 Acetyltransferase, (GN 93.8 0.15 3.3E-06 52.4 6.6 59 874-933 68-129 (173)
107 KOG3235 Subunit of the major N 93.7 0.18 3.9E-06 51.9 6.9 81 855-935 45-135 (193)
108 PF13480 Acetyltransf_6: Acety 93.6 0.41 9E-06 45.5 9.1 66 851-917 71-136 (142)
109 TIGR03694 exosort_acyl putativ 93.3 0.41 8.8E-06 52.3 9.5 120 808-932 17-195 (241)
110 COG4552 Eis Predicted acetyltr 93.3 0.1 2.2E-06 59.6 4.8 85 844-935 34-127 (389)
111 KOG1245 Chromatin remodeling c 92.9 0.027 5.8E-07 74.2 -0.4 48 602-649 1106-1158(1404)
112 COG5141 PHD zinc finger-contai 92.8 0.04 8.7E-07 64.3 0.9 47 693-750 194-240 (669)
113 PF06852 DUF1248: Protein of u 92.7 0.61 1.3E-05 49.1 9.3 82 852-935 48-137 (181)
114 smart00258 SAND SAND domain. 92.3 0.099 2.1E-06 47.4 2.5 49 261-311 20-69 (73)
115 COG1243 ELP3 Histone acetyltra 91.4 0.16 3.5E-06 59.7 3.6 64 868-935 446-509 (515)
116 KOG4323 Polycomb-like PHD Zn-f 90.1 0.097 2.1E-06 61.6 0.3 44 606-649 170-224 (464)
117 PF00765 Autoind_synth: Autoin 90.0 1.8 3.8E-05 45.6 9.5 82 849-932 44-152 (182)
118 PRK13834 putative autoinducer 89.8 1.8 3.9E-05 46.4 9.5 119 807-932 15-162 (207)
119 KOG0954 PHD finger protein [Ge 89.3 0.18 3.9E-06 61.7 1.7 47 694-751 273-319 (893)
120 COG3981 Predicted acetyltransf 88.9 0.7 1.5E-05 48.2 5.4 69 849-919 68-141 (174)
121 PF13831 PHD_2: PHD-finger; PD 87.6 0.094 2E-06 41.3 -1.4 32 712-750 3-35 (36)
122 cd04264 DUF619-NAGS DUF619 dom 86.1 1.4 3.1E-05 42.1 5.4 48 857-904 14-63 (99)
123 PF01342 SAND: SAND domain; I 84.7 0.15 3.2E-06 47.1 -1.8 55 255-311 18-78 (82)
124 cd04265 DUF619-NAGS-U DUF619 d 78.2 3.8 8.3E-05 39.3 5.0 48 857-904 15-63 (99)
125 TIGR03019 pepcterm_femAB FemAB 77.1 7.1 0.00015 44.1 7.7 80 854-934 198-280 (330)
126 PF07227 DUF1423: Protein of u 76.6 2.7 5.8E-05 49.7 4.2 56 695-754 131-193 (446)
127 PF12861 zf-Apc11: Anaphase-pr 75.1 1 2.2E-05 42.2 0.2 47 603-650 20-81 (85)
128 PF02474 NodA: Nodulation prot 74.4 4.7 0.0001 42.4 4.8 51 875-926 85-135 (196)
129 PF13832 zf-HC5HC2H_2: PHD-zin 74.2 1.4 2.9E-05 42.1 0.9 32 694-733 57-90 (110)
130 PF07897 DUF1675: Protein of u 73.1 5 0.00011 45.2 5.0 70 224-297 207-283 (284)
131 PF13771 zf-HC5HC2H: PHD-like 71.5 1.8 4E-05 39.6 1.0 32 694-733 38-71 (90)
132 KOG2036 Predicted P-loop ATPas 70.5 3.5 7.5E-05 51.1 3.2 52 828-902 590-641 (1011)
133 PF14446 Prok-RING_1: Prokaryo 67.6 3.8 8.3E-05 35.4 2.0 34 694-732 7-40 (54)
134 PF14446 Prok-RING_1: Prokaryo 66.1 3 6.5E-05 36.0 1.1 28 604-631 5-36 (54)
135 COG3818 Predicted acetyltransf 65.7 17 0.00037 36.9 6.4 58 880-937 89-150 (167)
136 COG5628 Predicted acetyltransf 64.5 28 0.00061 34.9 7.5 73 853-930 39-118 (143)
137 PF07897 DUF1675: Protein of u 63.4 5.8 0.00013 44.7 3.0 32 546-577 252-283 (284)
138 PF13444 Acetyltransf_5: Acety 61.6 14 0.0003 34.8 4.8 51 847-897 27-100 (101)
139 KOG4135 Predicted phosphogluco 60.4 18 0.0004 37.4 5.6 59 875-933 107-168 (185)
140 PF04377 ATE_C: Arginine-tRNA- 59.2 38 0.00082 34.0 7.6 61 852-913 40-100 (128)
141 KOG2535 RNA polymerase II elon 57.2 17 0.00037 41.9 5.3 66 867-936 481-548 (554)
142 KOG4628 Predicted E3 ubiquitin 56.7 6.6 0.00014 45.4 2.1 43 605-650 230-277 (348)
143 PF13880 Acetyltransf_13: ESCO 56.1 8.6 0.00019 34.9 2.2 27 878-904 8-34 (70)
144 PF13639 zf-RING_2: Ring finge 55.3 0.73 1.6E-05 37.0 -4.2 40 605-647 1-44 (44)
145 PF11793 FANCL_C: FANCL C-term 55.2 6.7 0.00015 35.1 1.5 46 605-650 3-65 (70)
146 PF01233 NMT: Myristoyl-CoA:pr 54.8 82 0.0018 33.1 9.3 110 791-911 23-146 (162)
147 KOG1473 Nucleosome remodeling 54.3 6.9 0.00015 50.6 1.9 44 694-751 346-389 (1414)
148 PF01853 MOZ_SAS: MOZ/SAS fami 53.4 54 0.0012 35.2 7.9 84 808-908 26-113 (188)
149 PF12678 zf-rbx1: RING-H2 zinc 52.6 2.3 5E-05 38.2 -1.9 43 603-647 18-73 (73)
150 KOG1081 Transcription factor N 52.3 10 0.00022 45.5 2.8 47 601-648 86-132 (463)
151 PRK00756 acyltransferase NodA; 49.7 26 0.00055 36.9 4.7 59 854-913 57-122 (196)
152 PLN03238 probable histone acet 47.5 37 0.0008 38.5 5.9 31 878-908 158-188 (290)
153 COG3916 LasI N-acyl-L-homoseri 46.9 1.1E+02 0.0023 33.5 9.0 82 848-930 50-158 (209)
154 PF15446 zf-PHD-like: PHD/FYVE 45.1 12 0.00026 39.2 1.6 34 695-731 2-35 (175)
155 PRK14852 hypothetical protein; 44.7 63 0.0014 42.4 8.1 83 853-935 77-181 (989)
156 PLN03239 histone acetyltransfe 43.9 31 0.00067 40.1 4.8 32 877-908 215-246 (351)
157 KOG2752 Uncharacterized conser 43.7 16 0.00034 41.7 2.4 108 606-731 57-167 (345)
158 PRK01305 arginyl-tRNA-protein 43.2 1.1E+02 0.0025 33.8 8.8 57 856-913 149-205 (240)
159 PF12261 T_hemolysin: Thermost 43.2 66 0.0014 34.2 6.7 55 873-932 85-139 (179)
160 COG0143 MetG Methionyl-tRNA sy 42.9 35 0.00075 42.1 5.3 92 694-796 144-243 (558)
161 PHA02929 N1R/p28-like protein; 42.2 8.6 0.00019 42.4 0.1 47 602-650 172-226 (238)
162 PF04958 AstA: Arginine N-succ 41.2 44 0.00095 38.9 5.5 105 804-929 30-182 (342)
163 KOG1701 Focal adhesion adaptor 40.6 10 0.00023 44.6 0.4 34 695-730 397-430 (468)
164 PF13901 DUF4206: Domain of un 40.5 32 0.00069 36.9 4.0 71 291-365 101-197 (202)
165 PF11793 FANCL_C: FANCL C-term 40.0 15 0.00033 32.9 1.3 33 695-730 5-39 (70)
166 KOG2747 Histone acetyltransfer 39.3 31 0.00068 40.6 3.9 77 808-902 208-287 (396)
167 PLN00104 MYST -like histone ac 39.0 31 0.00068 41.3 4.0 80 808-904 252-335 (450)
168 PTZ00064 histone acetyltransfe 38.2 47 0.001 40.3 5.2 84 808-908 330-417 (552)
169 cd00162 RING RING-finger (Real 36.6 10 0.00022 29.0 -0.4 40 607-648 2-43 (45)
170 KOG0804 Cytoplasmic Zn-finger 36.3 12 0.00025 44.5 -0.0 42 604-649 175-220 (493)
171 KOG0317 Predicted E3 ubiquitin 35.5 13 0.00027 42.0 0.1 50 601-654 236-287 (293)
172 TIGR03244 arg_catab_AstA argin 35.1 71 0.0015 37.1 5.9 50 849-898 53-140 (336)
173 KOG1493 Anaphase-promoting com 34.7 4.9 0.00011 37.0 -2.6 31 621-651 50-81 (84)
174 TIGR03245 arg_AOST_alph argini 34.5 69 0.0015 37.2 5.7 50 849-898 54-141 (336)
175 TIGR03243 arg_catab_AOST argin 33.8 74 0.0016 37.0 5.7 50 849-898 53-140 (335)
176 PRK10456 arginine succinyltran 33.4 71 0.0015 37.2 5.5 50 849-898 55-142 (344)
177 KOG1428 Inhibitor of type V ad 33.2 8 0.00017 51.1 -2.1 51 600-650 3482-3543(3738)
178 PF13832 zf-HC5HC2H_2: PHD-zin 32.0 21 0.00046 33.9 1.0 29 603-631 54-85 (110)
179 KOG0823 Predicted E3 ubiquitin 30.5 19 0.00042 39.4 0.5 54 601-654 44-98 (230)
180 KOG2779 N-myristoyl transferas 30.0 2.7E+02 0.0059 32.8 9.2 126 791-927 80-225 (421)
181 KOG1246 DNA-binding protein ju 29.8 35 0.00076 44.3 2.7 47 603-649 154-204 (904)
182 PLN03208 E3 ubiquitin-protein 29.7 17 0.00036 39.0 -0.1 50 602-651 16-79 (193)
183 KOG1298 Squalene monooxygenase 28.4 34 0.00073 40.5 1.9 188 21-246 97-319 (509)
184 KOG1632 Uncharacterized PHD Zn 28.2 32 0.00069 40.0 1.7 43 712-758 74-118 (345)
185 PF10080 DUF2318: Predicted me 27.8 92 0.002 30.3 4.4 70 507-584 2-87 (102)
186 TIGR02174 CXXU_selWTH selT/sel 27.5 41 0.00089 30.2 2.0 29 40-69 39-67 (72)
187 smart00184 RING Ring finger. E 27.5 11 0.00024 27.7 -1.5 38 607-646 1-39 (39)
188 KOG1829 Uncharacterized conser 27.1 19 0.00042 44.3 -0.3 38 707-756 525-562 (580)
189 KOG1734 Predicted RING-contain 26.2 18 0.00038 40.6 -0.7 49 601-650 221-280 (328)
190 PF13771 zf-HC5HC2H: PHD-like 25.0 33 0.0007 31.4 0.9 28 604-631 36-66 (90)
191 COG5027 SAS2 Histone acetyltra 24.7 44 0.00096 38.8 2.0 54 846-899 229-286 (395)
192 PF13901 DUF4206: Domain of un 23.4 61 0.0013 34.7 2.7 35 695-730 155-189 (202)
193 PF10262 Rdx: Rdx family; Int 23.3 23 0.00051 31.9 -0.4 27 41-68 42-68 (76)
194 COG5574 PEX10 RING-finger-cont 23.0 23 0.0005 39.6 -0.6 52 601-653 212-264 (271)
195 PF07649 C1_3: C1-like domain; 22.5 34 0.00073 25.6 0.4 27 695-727 3-29 (30)
196 PF05301 Mec-17: Touch recepto 21.8 67 0.0015 32.2 2.4 48 883-931 54-102 (120)
197 TIGR03827 GNAT_ablB putative b 21.7 1.3E+02 0.0027 33.2 4.8 43 891-934 21-63 (266)
198 PLN02400 cellulose synthase 21.2 77 0.0017 41.8 3.3 50 602-652 34-90 (1085)
199 KOG0827 Predicted E3 ubiquitin 20.6 19 0.00042 42.0 -1.8 43 605-649 5-54 (465)
200 PHA02926 zinc finger-like prot 20.2 44 0.00096 36.7 0.8 49 602-650 168-229 (242)
No 1
>COG1246 ArgA N-acetylglutamate synthase and related acetyltransferases [Amino acid transport and metabolism]
Probab=99.21 E-value=1.5e-11 Score=123.22 Aligned_cols=90 Identities=18% Similarity=0.240 Sum_probs=80.0
Q ss_pred eEecEEEEEEEeCCeEEEEEEEE-EeCCeeEEEeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEecchhhhHHHHH
Q 002000 847 EFGGMYCAILTVNSSVVSAGILR-VFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWT 925 (983)
Q Consensus 847 df~Gfy~~VL~~~~~vVsaA~lr-i~g~~~AEip~VAT~~~~RgqG~gr~Lv~~IE~~l~~lgV~~LvLpA~~~A~~~w~ 925 (983)
++..|+.+ +.+|.+||||.|+ +.+.+++||..|||+|+|||+|+|..|+..++..|+.+|++++++.+. -.+-|+
T Consensus 38 ~i~dF~i~--E~~g~viGC~aL~~~~~~~~gE~~~laV~pd~r~~G~G~~Ll~~~~~~Ar~~gi~~lf~LTt--~~~~~F 113 (153)
T COG1246 38 EIDDFTII--ERDGKVIGCAALHPVLEEDLGELRSLAVHPDYRGSGRGERLLERLLADARELGIKELFVLTT--RSPEFF 113 (153)
T ss_pred HHhhheee--eeCCcEEEEEeecccCccCeeeEEEEEECHHhcCCCcHHHHHHHHHHHHHHcCCceeeeeec--ccHHHH
Confidence 55667665 8899999999999 799999999999999999999999999999999999999999999993 166777
Q ss_pred hccCcEEcCHHHHHH
Q 002000 926 DKFGFKKIDPELLSI 940 (983)
Q Consensus 926 ~kfGF~~v~~~~~~~ 940 (983)
.++||+.++.+++..
T Consensus 114 ~~~GF~~vd~~~LP~ 128 (153)
T COG1246 114 AERGFTRVDKDELPE 128 (153)
T ss_pred HHcCCeECccccCCH
Confidence 779999999966543
No 2
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=99.03 E-value=1.3e-10 Score=135.48 Aligned_cols=150 Identities=24% Similarity=0.573 Sum_probs=95.9
Q ss_pred ccccccccccC-----CCeeccCC--CCCccCcccCCCCCCCCCCccccccccc-----c------cccccccccccccc
Q 002000 603 NDDLCTICADG-----GNLLPCDG--CPRAFHKECASLSSIPQGDWYCKYCQNM-----F------ERKRFLQHDANAVE 664 (983)
Q Consensus 603 ndd~C~VC~dg-----G~Ll~CD~--CprafH~~Cl~l~~vP~g~W~C~~C~~~-----~------~~ek~v~~n~na~a 664 (983)
...-|.||.|. .-|++||+ |..+.|+.|+++.+||.|.|||+.|... + .+..++++.-|...
T Consensus 4 MVGGCCVCSDErGWaeNPLVYCDG~nCsVAVHQaCYGIvqVPtGpWfCrKCesqeraarvrCeLCP~kdGALKkTDn~GW 83 (900)
T KOG0956|consen 4 MVGGCCVCSDERGWAENPLVYCDGHNCSVAVHQACYGIVQVPTGPWFCRKCESQERAARVRCELCPHKDGALKKTDNGGW 83 (900)
T ss_pred cccceeeecCcCCCccCceeeecCCCceeeeehhcceeEecCCCchhhhhhhhhhhhccceeecccCcccceecccCCCc
Confidence 34569999975 33999998 9999999999999999999999999642 1 22344444333321
Q ss_pred cc----------cccccCchhchhhhhhceecccccc--CCcccccccCCCCCCCCCCCceecCC--CCCCccCcccCCc
Q 002000 665 AG----------RVSGVDSVEQITKRCIRIVKNLEAE--LSGCLLCRGCDFSKSGFGPRTILLCD--QCEREFHVGCLKK 730 (983)
Q Consensus 665 ~g----------~~~Gvd~~eqi~kRC~r~vk~~e~e--~~~C~IC~~~dfs~sgf~~~tLL~CD--qCerayHv~CL~~ 730 (983)
+- ++.-|..+|.|+ +++...| .-.||||.+-+.... ..-+..|.|. .|.++|||.|.+.
T Consensus 84 AHVVCALYIPEVrFgNV~TMEPIi------Lq~VP~dRfnKtCYIC~E~Grpnk-A~~GACMtCNKs~CkqaFHVTCAQ~ 156 (900)
T KOG0956|consen 84 AHVVCALYIPEVRFGNVHTMEPII------LQDVPHDRFNKTCYICNEEGRPNK-AAKGACMTCNKSGCKQAFHVTCAQR 156 (900)
T ss_pred eEEEEEeeccceeeccccccccee------eccCchhhhcceeeeecccCCccc-cccccceecccccchhhhhhhHhhh
Confidence 11 111222233221 1111111 123999998763322 2356789998 7999999999988
Q ss_pred ccCCcccc--CCCCCeEecCCchhhHHHHHHh
Q 002000 731 HKMADLRE--LPKGKWFCCMDCSRINSVLQNL 760 (983)
Q Consensus 731 ~~m~~Lke--lP~g~WfC~~~C~~I~~~LqkL 760 (983)
.++..-++ +-..--|| -.|+..+.+|.+-
T Consensus 157 ~GLLCEE~gn~~dNVKYC-GYCk~HfsKlkk~ 187 (900)
T KOG0956|consen 157 AGLLCEEEGNISDNVKYC-GYCKYHFSKLKKS 187 (900)
T ss_pred hccceeccccccccceec-hhHHHHHHHhhcC
Confidence 76543222 11233578 7999999888764
No 3
>PRK10314 putative acyltransferase; Provisional
Probab=99.02 E-value=1.2e-09 Score=109.57 Aligned_cols=81 Identities=17% Similarity=0.114 Sum_probs=71.9
Q ss_pred EEEeCCeEEEEEEEEEeCC--eeEEEeeeEeecCcccCChhHHHHHHHHHHhhhc-CccEEEecchhhhHHHHHhccCcE
Q 002000 855 ILTVNSSVVSAGILRVFGQ--EVAELPLVATSKINHGKGYFQLLFACIEKLLSFL-RVKSIVLPAAEEAESIWTDKFGFK 931 (983)
Q Consensus 855 VL~~~~~vVsaA~lri~g~--~~AEip~VAT~~~~RgqG~gr~Lv~~IE~~l~~l-gV~~LvLpA~~~A~~~w~~kfGF~ 931 (983)
++..++++||+|++...+. ..++|..|||+++|||+|+|+.||..+++.++.. +...++|.|...|++||.+ |||.
T Consensus 52 ~~~~~~~~vg~~r~~~~~~~~~~~~i~rv~V~~~~rG~GiG~~Lm~~~~~~~~~~~~~~~i~L~a~~~a~~fY~k-~GF~ 130 (153)
T PRK10314 52 LGWKNDELVAYARILKSDDDLEPVVIGRVIVSEALRGEKVGQQLMSKTLESCTRHWPDKPVYLGAQAHLQNFYQS-FGFI 130 (153)
T ss_pred EEEECCEEEEEEEEecCCCCCCCEEEEEEEECHHHhCCCHHHHHHHHHHHHHHHHCCCCcEEEehHHHHHHHHHH-CCCE
Confidence 4567899999999987543 3689999999999999999999999999998875 7889999999999999999 9999
Q ss_pred EcCHH
Q 002000 932 KIDPE 936 (983)
Q Consensus 932 ~v~~~ 936 (983)
.+++.
T Consensus 131 ~~g~~ 135 (153)
T PRK10314 131 PVTEV 135 (153)
T ss_pred ECCCc
Confidence 99873
No 4
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=99.01 E-value=2.7e-09 Score=94.26 Aligned_cols=77 Identities=18% Similarity=0.138 Sum_probs=67.1
Q ss_pred EEEEEEEeCCeEEEEEEEEEeCCeeEEEeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEecchhhhHHHHHhccCc
Q 002000 851 MYCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGF 930 (983)
Q Consensus 851 fy~~VL~~~~~vVsaA~lri~g~~~AEip~VAT~~~~RgqG~gr~Lv~~IE~~l~~lgV~~LvLpA~~~A~~~w~~kfGF 930 (983)
-+.++++.++++||++.+...++ .+.|..+||+|+|||||+|+.||..+++.+.. ..+++.+.+.+.+||.+ +||
T Consensus 3 ~~~~~~~~~~~ivG~~~~~~~~~-~~~i~~~~v~~~~rg~Gig~~ll~~~~~~~~~---~~i~l~~~~~~~~fY~~-~GF 77 (79)
T PF13508_consen 3 ERFFVAEDDGEIVGFIRLWPNED-FAYIGYLAVDPEYRGKGIGSKLLNYLLEKAKS---KKIFLFTNPAAIKFYEK-LGF 77 (79)
T ss_dssp EEEEEEEETTEEEEEEEEEETTT-EEEEEEEEE-GGGTTSSHHHHHHHHHHHHHTC---SEEEEEEEHHHHHHHHH-TTE
T ss_pred cEEEEEEECCEEEEEEEEEEcCC-EEEEEEEEECHHHcCCCHHHHHHHHHHHHcCC---CcEEEEEcHHHHHHHHH-CcC
Confidence 46778899999999999966664 99999999999999999999999999888854 56678888999999999 999
Q ss_pred EE
Q 002000 931 KK 932 (983)
Q Consensus 931 ~~ 932 (983)
++
T Consensus 78 ~~ 79 (79)
T PF13508_consen 78 EE 79 (79)
T ss_dssp EE
T ss_pred CC
Confidence 85
No 5
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=98.96 E-value=4.2e-09 Score=92.19 Aligned_cols=74 Identities=20% Similarity=0.250 Sum_probs=67.9
Q ss_pred EeCCeEEEEEEEEEeCC-----eeEEEeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEecchhh---hHHHHHhcc
Q 002000 857 TVNSSVVSAGILRVFGQ-----EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEE---AESIWTDKF 928 (983)
Q Consensus 857 ~~~~~vVsaA~lri~g~-----~~AEip~VAT~~~~RgqG~gr~Lv~~IE~~l~~lgV~~LvLpA~~~---A~~~w~~kf 928 (983)
+.+|++||++.+++... ..+.|..++|+++|||+|+|+.|++.+++.++..|+..|.+.+..+ +..||.+ +
T Consensus 2 ~~~~~ivg~~~~~~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~L~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~~~k-~ 80 (83)
T PF00583_consen 2 EEDGQIVGFASLRPPPEPFDHGNHAYIHRLAVDPEYRGQGIGSKLLQAAEEWARKRGIKRIYLDVSPDNPAARRFYEK-L 80 (83)
T ss_dssp EETTEEEEEEEEEEEETTTTTTTEEEEEEEEECGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTGHHHHHHHHH-T
T ss_pred cCCCEEEEEEEEEECCCccccCCEEEEEEEEEcHHHhhCCCchhhhhhhhhhHHhcCccEEEEEEeCCCHHHHHHHHH-c
Confidence 68999999999999886 5999999999999999999999999999999999999998887655 5699998 9
Q ss_pred CcE
Q 002000 929 GFK 931 (983)
Q Consensus 929 GF~ 931 (983)
||+
T Consensus 81 Gf~ 83 (83)
T PF00583_consen 81 GFE 83 (83)
T ss_dssp TEE
T ss_pred CCC
Confidence 996
No 6
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=98.92 E-value=2.4e-10 Score=121.97 Aligned_cols=92 Identities=29% Similarity=0.854 Sum_probs=76.0
Q ss_pred cccccccccc----------CCCeeccCCCCCccCcccCCCC-----CCCCCCccccccccccccccccccccccccccc
Q 002000 603 NDDLCTICAD----------GGNLLPCDGCPRAFHKECASLS-----SIPQGDWYCKYCQNMFERKRFLQHDANAVEAGR 667 (983)
Q Consensus 603 ndd~C~VC~d----------gG~Ll~CD~CprafH~~Cl~l~-----~vP~g~W~C~~C~~~~~~ek~v~~n~na~a~g~ 667 (983)
...+|..|.+ +.+|+.|..|+|+=|..||.++ .|-...|+|..|++
T Consensus 223 Pn~YCDFclgdsr~nkkt~~peelvscsdcgrsghpsclqft~nm~~avk~yrwqcieck~------------------- 283 (336)
T KOG1244|consen 223 PNPYCDFCLGDSRENKKTGMPEELVSCSDCGRSGHPSCLQFTANMIAAVKTYRWQCIECKY------------------- 283 (336)
T ss_pred CCcccceeccccccccccCCchhhcchhhcCCCCCcchhhhhHHHHHHHHhheeeeeecce-------------------
Confidence 4456777774 3569999999999999999643 55668899999984
Q ss_pred ccccCchhchhhhhhceeccccccCCcccccccCCCCCCCCCCCceecCCCCCCccCcccCCcccCCccccCCCCCeEec
Q 002000 668 VSGVDSVEQITKRCIRIVKNLEAELSGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCC 747 (983)
Q Consensus 668 ~~Gvd~~eqi~kRC~r~vk~~e~e~~~C~IC~~~dfs~sgf~~~tLL~CDqCerayHv~CL~~~~m~~LkelP~g~WfC~ 747 (983)
|.||+-++ ++..+|+||-|+|.||++||.| +|.+.|+|.|-|
T Consensus 284 ---------------------------csicgtse------nddqllfcddcdrgyhmyclsp----pm~eppegswsc- 325 (336)
T KOG1244|consen 284 ---------------------------CSICGTSE------NDDQLLFCDDCDRGYHMYCLSP----PMVEPPEGSWSC- 325 (336)
T ss_pred ---------------------------eccccCcC------CCceeEeecccCCceeeEecCC----CcCCCCCCchhH-
Confidence 88999765 5678999999999999999998 566789999999
Q ss_pred CCch
Q 002000 748 MDCS 751 (983)
Q Consensus 748 ~~C~ 751 (983)
.-|-
T Consensus 326 ~KOG 329 (336)
T KOG1244|consen 326 HLCL 329 (336)
T ss_pred HHHH
Confidence 5663
No 7
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=98.88 E-value=1.1e-08 Score=95.04 Aligned_cols=74 Identities=18% Similarity=0.227 Sum_probs=65.0
Q ss_pred EEEEEEEeCCeEEEEEEEEEeCCeeEEEeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEecchhhhHHHHHhccCc
Q 002000 851 MYCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGF 930 (983)
Q Consensus 851 fy~~VL~~~~~vVsaA~lri~g~~~AEip~VAT~~~~RgqG~gr~Lv~~IE~~l~~lgV~~LvLpA~~~A~~~w~~kfGF 930 (983)
...+|++.+|++||.+.++ .-++|..+.|+|+|||+|+|++||..+++.++. |++.+.+.+...|.+||.+ +||
T Consensus 44 ~~~~v~~~~~~ivG~~~~~----~~~~i~~l~v~p~~r~~Gig~~Ll~~~~~~~~~-~~~~l~~~~~~~a~~~y~~-~GF 117 (117)
T PF13673_consen 44 HTIFVAEEGGEIVGFAWLE----PDGEISHLYVLPEYRGRGIGRALLDAAEKEAKD-GIRRLTVEANERARRFYRK-LGF 117 (117)
T ss_dssp CEEEEEEETTEEEEEEEEE----TCEEEEEEEE-GGGTTSSHHHHHHHHHHHHHTT-TCEEEEEEC-HHHHHHHHH-TT-
T ss_pred CEEEEEEECCEEEEEEEEc----CCCeEEEEEEChhhcCCcHHHHHHHHHHHHHHc-CCcEEEEEeCHHHHHHHHh-CCC
Confidence 4567789999999999986 345599999999999999999999999999988 9999999999999999999 998
No 8
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=98.88 E-value=1.3e-09 Score=125.14 Aligned_cols=202 Identities=17% Similarity=0.232 Sum_probs=132.6
Q ss_pred cccccccccc-----CCCeeccCCCCCccCcccCCCCCCCCCCcccccccccccccccccccccccccccccccCchhch
Q 002000 603 NDDLCTICAD-----GGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMFERKRFLQHDANAVEAGRVSGVDSVEQI 677 (983)
Q Consensus 603 ndd~C~VC~d-----gG~Ll~CD~CprafH~~Cl~l~~vP~g~W~C~~C~~~~~~ek~v~~n~na~a~g~~~Gvd~~eqi 677 (983)
..-.|.+|.. +.++..|+.|.++||+.|.-......+.|.+..|.....-.+-++......+. -+.++.
T Consensus 82 ~e~~~nv~~s~~~~p~~e~~~~~r~~~~~~q~~~i~~~~~~~~~~~~~c~~~~~~~~g~a~K~g~~a~----~~l~y~-- 155 (464)
T KOG4323|consen 82 SELNPNVLTSETVLPENEKVICGRCKSGYHQGCNIPRFPSLDIGESTECVFPIFSQEGGALKKGRLAR----PSLPYP-- 155 (464)
T ss_pred cccCCcccccccccCchhhhhhhhhccCcccccCccCcCcCCcccccccccccccccccccccccccc----ccccCc--
Confidence 3445777763 45688999999999999995544556789999887653211111111111110 000000
Q ss_pred hhhhhceeccccccC-----CcccccccCCCCCCCCCCCceecCCCCCCccCcccCCcccCCccccCCCCCeEecCCchh
Q 002000 678 TKRCIRIVKNLEAEL-----SGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCSR 752 (983)
Q Consensus 678 ~kRC~r~vk~~e~e~-----~~C~IC~~~dfs~sgf~~~tLL~CDqCerayHv~CL~~~~m~~LkelP~g~WfC~~~C~~ 752 (983)
....+++. ..|.+|...++. ....||+|+.|..|||..|.++..-..+-.-+...||| ..|.+
T Consensus 156 -------~~~l~wD~~~~~n~qc~vC~~g~~~----~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C-~~C~~ 223 (464)
T KOG4323|consen 156 -------EASLDWDSGHKVNLQCSVCYCGGPG----AGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFC-DVCNR 223 (464)
T ss_pred -------ccccccCccccccceeeeeecCCcC----ccceeeeecccccHHHHHhccCCCCHhhccCccceEee-hhhcc
Confidence 00011111 128888865522 23389999999999999999886443444457789999 79999
Q ss_pred hHHHHHHhhhhccccCchhhHH--Hhh--hhhcCccccccccCceeEEcc-CCCCC---hhhHHHHHHHHHhhhhcCC
Q 002000 753 INSVLQNLLVQEAEKLPEFHLN--AIK--KYAGNSLETVSDIDVRWRLLS-GKAAT---PETRLLLSQAVAIFHDCFD 822 (983)
Q Consensus 753 I~~~LqkLva~g~e~lp~sll~--~I~--k~~e~gle~~~~~~i~W~lL~-gk~~s---~e~~skLa~AL~If~EcFd 822 (983)
-...+..+-.+|++.++..+.+ .+. +++..-.++....+-.|..|. |+..+ .+..+.+..|++-....|.
T Consensus 224 ~~~~~~r~t~~~~dv~~lal~~~~~~~~~k~~~~~~ei~~f~e~~~~slp~~e~~tsp~~~~~~~~lsal~~~~~~f~ 301 (464)
T KOG4323|consen 224 GPKKVPRLTLRWADVLHLALYNLKPMLKKKYFKSLVEILLFCEESWPSLPFYEPKTSPVTERSSSLLSALSSYKSRFV 301 (464)
T ss_pred chhhccccccccccccchhhhhhhhhhccCCcccHHHHHHHHhhccccccccCCccccccchhhHHHHhhhccccccc
Confidence 9999999999999998877743 333 667666677677778898776 55554 4567788888888887663
No 9
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.77 E-value=1.6e-09 Score=116.23 Aligned_cols=92 Identities=28% Similarity=0.665 Sum_probs=75.8
Q ss_pred cccccccccccC---------CCeeccCCCCCccCcccCCCC-----CCCCCCccccccccccccccccccccccccccc
Q 002000 602 DNDDLCTICADG---------GNLLPCDGCPRAFHKECASLS-----SIPQGDWYCKYCQNMFERKRFLQHDANAVEAGR 667 (983)
Q Consensus 602 ~ndd~C~VC~dg---------G~Ll~CD~CprafH~~Cl~l~-----~vP~g~W~C~~C~~~~~~ek~v~~n~na~a~g~ 667 (983)
.....|.+|.++ ..+++|..|..++|..|+.+. .+-...|.|-.|+-
T Consensus 256 ~~~~~~~~~~~~~~~~~~~r~~S~I~C~~C~~~~HP~Ci~M~~elv~~~KTY~W~C~~C~l------------------- 316 (381)
T KOG1512|consen 256 QRRNERKHFWDIQTNIIQSRRNSWIVCKPCATRPHPYCVAMIPELVGQYKTYFWKCSSCEL------------------- 316 (381)
T ss_pred cchhhhhhhhcchhhhhhhhhccceeecccccCCCCcchhcCHHHHhHHhhcchhhcccHh-------------------
Confidence 345679999875 338999999999999999743 34457899999972
Q ss_pred ccccCchhchhhhhhceeccccccCCcccccccCCCCCCCCCCCceecCCCCCCccCcccCCcccCCccccCCCCCeEec
Q 002000 668 VSGVDSVEQITKRCIRIVKNLEAELSGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCC 747 (983)
Q Consensus 668 ~~Gvd~~eqi~kRC~r~vk~~e~e~~~C~IC~~~dfs~sgf~~~tLL~CDqCerayHv~CL~~~~m~~LkelP~g~WfC~ 747 (983)
|.||+++. -+..+++||.|+|.||..|+ +|..+|.|.|.|.
T Consensus 317 ---------------------------C~IC~~P~------~E~E~~FCD~CDRG~HT~CV------GL~~lP~G~WICD 357 (381)
T KOG1512|consen 317 ---------------------------CRICLGPV------IESEHLFCDVCDRGPHTLCV------GLQDLPRGEWICD 357 (381)
T ss_pred ---------------------------hhccCCcc------cchheeccccccCCCCcccc------ccccccCccchhh
Confidence 89999875 45689999999999999999 6889999999996
Q ss_pred CCch
Q 002000 748 MDCS 751 (983)
Q Consensus 748 ~~C~ 751 (983)
..|.
T Consensus 358 ~~C~ 361 (381)
T KOG1512|consen 358 MRCR 361 (381)
T ss_pred hHHH
Confidence 6674
No 10
>PTZ00330 acetyltransferase; Provisional
Probab=98.75 E-value=5e-08 Score=94.39 Aligned_cols=83 Identities=14% Similarity=0.207 Sum_probs=72.4
Q ss_pred EEEEEEeCCeEEEEEEEEEeC------CeeEEEeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEecchhhhHHHHH
Q 002000 852 YCAILTVNSSVVSAGILRVFG------QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWT 925 (983)
Q Consensus 852 y~~VL~~~~~vVsaA~lri~g------~~~AEip~VAT~~~~RgqG~gr~Lv~~IE~~l~~lgV~~LvLpA~~~A~~~w~ 925 (983)
+.++...+|++||.+.+.... ...++|-.+.|.++|||+|+|+.||..+++.++..|+.++++.+...|..||+
T Consensus 53 ~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~i~~~~V~~~~rg~Gig~~l~~~~~~~a~~~~~~~l~l~~n~~a~~~y~ 132 (147)
T PTZ00330 53 RVFVHSPTQRIVGTASLFVEPKFTRGGKCVGHIEDVVVDPSYRGQGLGRALISDLCEIARSSGCYKVILDCTEDMVAFYK 132 (147)
T ss_pred EEEEEeCCCEEEEEEEEEeccccccCCCceEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEecChHHHHHHH
Confidence 345556789999999987532 23678889999999999999999999999999999999999999999999999
Q ss_pred hccCcEEcCH
Q 002000 926 DKFGFKKIDP 935 (983)
Q Consensus 926 ~kfGF~~v~~ 935 (983)
+ +||.....
T Consensus 133 k-~GF~~~~~ 141 (147)
T PTZ00330 133 K-LGFRACER 141 (147)
T ss_pred H-CCCEEece
Confidence 9 99998774
No 11
>PRK10146 aminoalkylphosphonic acid N-acetyltransferase; Provisional
Probab=98.70 E-value=5.4e-08 Score=93.80 Aligned_cols=80 Identities=14% Similarity=0.091 Sum_probs=69.0
Q ss_pred EEEEeCCeEEEEEEEEEeC-----CeeEEEeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEecch---hhhHHHHH
Q 002000 854 AILTVNSSVVSAGILRVFG-----QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAA---EEAESIWT 925 (983)
Q Consensus 854 ~VL~~~~~vVsaA~lri~g-----~~~AEip~VAT~~~~RgqG~gr~Lv~~IE~~l~~lgV~~LvLpA~---~~A~~~w~ 925 (983)
+|++.++++||.+.++... ...++|..++|+++|||||+|+.||..+++.++..|+..+.|.+. ..|..||+
T Consensus 50 ~v~~~~~~ivG~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~GiG~~Ll~~~~~~a~~~~~~~i~l~~~~~n~~a~~fY~ 129 (144)
T PRK10146 50 HLALLDGEVVGMIGLHLQFHLHHVNWIGEIQELVVMPQARGLNVGSKLLAWAEEEARQAGAEMTELSTNVKRHDAHRFYL 129 (144)
T ss_pred EEEEECCEEEEEEEEEecccccccchhheeheeEECHHHcCCCHHHHHHHHHHHHHHHcCCcEEEEecCCCchHHHHHHH
Confidence 4567899999999987642 235789999999999999999999999999999999999988765 47999999
Q ss_pred hccCcEEcC
Q 002000 926 DKFGFKKID 934 (983)
Q Consensus 926 ~kfGF~~v~ 934 (983)
+ +||....
T Consensus 130 ~-~Gf~~~~ 137 (144)
T PRK10146 130 R-EGYEQSH 137 (144)
T ss_pred H-cCCchhh
Confidence 9 9997653
No 12
>PLN02706 glucosamine 6-phosphate N-acetyltransferase
Probab=98.69 E-value=9e-08 Score=93.61 Aligned_cols=82 Identities=13% Similarity=0.272 Sum_probs=69.6
Q ss_pred EEEEEEe--CCeEEEEEEEEEeC------CeeEEEeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEecchhhhHHH
Q 002000 852 YCAILTV--NSSVVSAGILRVFG------QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESI 923 (983)
Q Consensus 852 y~~VL~~--~~~vVsaA~lri~g------~~~AEip~VAT~~~~RgqG~gr~Lv~~IE~~l~~lgV~~LvLpA~~~A~~~ 923 (983)
|.++++. ++++||.+.+++.. ..++.|..++|.++|||||||+.|+..+++.|+.+|+++|++.+..+...|
T Consensus 54 ~~~~~~~~~~~~ivG~~~~~~~~~~~~~~~~~~~i~~i~V~~~~rg~GiG~~ll~~~~~~a~~~g~~~i~l~~~~~N~~~ 133 (150)
T PLN02706 54 LICVIEDAASGRIIATGSVFVERKFIRNCGKVGHIEDVVVDSAARGKGLGKKIIEALTEHARSAGCYKVILDCSEENKAF 133 (150)
T ss_pred EEEEEEeCCCCcEEEEEEEEEEeecccCCCcEEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEeccccHHH
Confidence 3444454 68999999986432 356778889999999999999999999999999999999999999888999
Q ss_pred HHhccCcEEcC
Q 002000 924 WTDKFGFKKID 934 (983)
Q Consensus 924 w~~kfGF~~v~ 934 (983)
|.+ +||...+
T Consensus 134 y~k-~GF~~~g 143 (150)
T PLN02706 134 YEK-CGYVRKE 143 (150)
T ss_pred HHH-CcCEEeh
Confidence 987 9999764
No 13
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=98.68 E-value=5.8e-08 Score=107.76 Aligned_cols=75 Identities=15% Similarity=0.200 Sum_probs=68.2
Q ss_pred EEEEeCCeEEEEEEEEEeCCeeEEEeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEecchhhhHHHHHhccCcEEc
Q 002000 854 AILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKI 933 (983)
Q Consensus 854 ~VL~~~~~vVsaA~lri~g~~~AEip~VAT~~~~RgqG~gr~Lv~~IE~~l~~lgV~~LvLpA~~~A~~~w~~kfGF~~v 933 (983)
.|.+.++++||+|++.. .+|..|||+++|||||+|+.||..+++.++..|+.+++|.+..++.+||.+ +||..+
T Consensus 9 ~v~~~~~~iVG~~~l~~-----~~I~~vaV~p~~Rg~GiG~~Ll~~l~~~a~~~g~~~i~L~t~~~~~~fYek-~GF~~~ 82 (297)
T cd02169 9 GIFDDAGELIATGSIAG-----NVLKCVAVCPKYQGEGLALKIVSELINKAYEEGIFHLFLFTKPKNAKFFRG-LGFKEL 82 (297)
T ss_pred EEEEECCEEEEEEEecc-----CEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEcccHHHHHHH-CCCEEe
Confidence 34457799999998842 369999999999999999999999999999999999999999999999997 999998
Q ss_pred C
Q 002000 934 D 934 (983)
Q Consensus 934 ~ 934 (983)
+
T Consensus 83 ~ 83 (297)
T cd02169 83 A 83 (297)
T ss_pred c
Confidence 8
No 14
>PRK07922 N-acetylglutamate synthase; Validated
Probab=98.68 E-value=8e-08 Score=97.76 Aligned_cols=79 Identities=20% Similarity=0.323 Sum_probs=71.2
Q ss_pred EEEE-eCCeEEEEEEEEEeCCeeEEEeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEecchhhhHHHHHhccCcEE
Q 002000 854 AILT-VNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKK 932 (983)
Q Consensus 854 ~VL~-~~~~vVsaA~lri~g~~~AEip~VAT~~~~RgqG~gr~Lv~~IE~~l~~lgV~~LvLpA~~~A~~~w~~kfGF~~ 932 (983)
+|++ .++++||.+.+.+.+.+.++|..++|+++|||+|+|+.||+++++.++..|++++++... +..||.+ +||+.
T Consensus 48 ~va~~~~~~iiG~~~~~~~~~~~~~i~~l~V~p~~rgkGiG~~Ll~~~~~~a~~~g~~~l~~~~~--~~~fY~k-~GF~~ 124 (169)
T PRK07922 48 WVAEHLDGEVVGCGALHVMWEDLAEIRTVAVDPAARGRGVGHAIVERLLDVARELGLSRVFVLTF--EVEFFAR-HGFVE 124 (169)
T ss_pred EEEEecCCcEEEEEEEeecCCCceEEEEEEECHHHhCCCHHHHHHHHHHHHHHHcCCCEEEEEec--cHHHHHH-CCCEE
Confidence 4566 889999999998888889999999999999999999999999999999999999987654 4789999 99999
Q ss_pred cCH
Q 002000 933 IDP 935 (983)
Q Consensus 933 v~~ 935 (983)
++.
T Consensus 125 ~~~ 127 (169)
T PRK07922 125 IDG 127 (169)
T ss_pred Ccc
Confidence 875
No 15
>PLN02825 amino-acid N-acetyltransferase
Probab=98.67 E-value=9e-08 Score=113.07 Aligned_cols=89 Identities=21% Similarity=0.291 Sum_probs=78.0
Q ss_pred EEEEeCCeEEEEEEEEEeC-CeeEEEeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEecchhhhHHHHHhccCcEE
Q 002000 854 AILTVNSSVVSAGILRVFG-QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKK 932 (983)
Q Consensus 854 ~VL~~~~~vVsaA~lri~g-~~~AEip~VAT~~~~RgqG~gr~Lv~~IE~~l~~lgV~~LvLpA~~~A~~~w~~kfGF~~ 932 (983)
+|++.||++||+|.+..+. .+.+||-.|||+++|||+|+|++||+++|+.++++|+++|++.+ ..+..||.+ +||..
T Consensus 410 ~V~e~Dg~IVG~aal~~~~~~~~aEI~~laV~P~yRGkGiG~~LL~~le~~Ar~~G~~~L~Llt-t~a~~fY~k-~GF~~ 487 (515)
T PLN02825 410 VVVEREGSIIACAALFPFFEEKCGEVAAIAVSPECRGQGQGDKLLDYIEKKAASLGLEKLFLLT-TRTADWFVR-RGFSE 487 (515)
T ss_pred EEEEECCEEEEEEEEEeecCCCcEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEe-CcHHHHHHH-CCCEE
Confidence 4568999999999987765 46899999999999999999999999999999999999999977 467777777 99999
Q ss_pred cCHHHHHHHHhc
Q 002000 933 IDPELLSIYRKR 944 (983)
Q Consensus 933 v~~~~~~~~~~~ 944 (983)
.+.+++..-|+.
T Consensus 488 ~~~~~lp~~~~~ 499 (515)
T PLN02825 488 CSIESLPEARRK 499 (515)
T ss_pred eChhhCCHHHHh
Confidence 999887766655
No 16
>PF13527 Acetyltransf_9: Acetyltransferase (GNAT) domain; PDB: 3SXN_C 2I00_D 1M4D_B 1M44_A 1M4G_B 1M4I_A 2OZG_A 2HV2_F 3N7Z_A 3RYO_B ....
Probab=98.65 E-value=1.8e-07 Score=88.58 Aligned_cols=111 Identities=22% Similarity=0.250 Sum_probs=80.0
Q ss_pred HHHHHHhhhhcCCCcccCCCCCCcccchhccccCCCceEecEEEEEEEeCCeEEEEEEEEEe-----CC--eeEEEeeeE
Q 002000 810 LSQAVAIFHDCFDPIVDSISGRDLIPSMVYGRNLRGQEFGGMYCAILTVNSSVVSAGILRVF-----GQ--EVAELPLVA 882 (983)
Q Consensus 810 La~AL~If~EcFdPivD~~Sg~DLIp~MVy~~~~~r~df~Gfy~~VL~~~~~vVsaA~lri~-----g~--~~AEip~VA 882 (983)
..+..+++.++|.+-.... ..+-|..+.-. .-++++++.+|++||.+.+... |. .++.|--||
T Consensus 10 ~~~i~~l~~~~F~~~~~~~------~~~~~~~~~~~----~~~~~~~~~~~~ivg~~~~~~~~~~~~g~~~~~~~i~~v~ 79 (127)
T PF13527_consen 10 FEQIIELFNEAFGDSESPP------EIWEYFRNLYG----PGRCVVAEDDGKIVGHVGLIPRRLSVGGKKFKAAYIGDVA 79 (127)
T ss_dssp HHHHHHHHHHHTTT-CHHH------HHHHHHHHHHH----TTEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHCCCCCCch------hhhhhhhcccC----cCcEEEEEECCEEEEEEEEEEEEEEECCEEEEEEEEEEEE
Confidence 4566777888885543332 22233222211 1256777889999999887654 43 589999999
Q ss_pred eecCcccCChhHHHHHHHHHHhhhcCccEEEecchhhhHHHHHhccCcEEc
Q 002000 883 TSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKI 933 (983)
Q Consensus 883 T~~~~RgqG~gr~Lv~~IE~~l~~lgV~~LvLpA~~~A~~~w~~kfGF~~v 933 (983)
|.|+|||||+++.||.++++.++..|+..+++-+ ...++|.+ |||+.+
T Consensus 80 v~p~~R~~Gl~~~L~~~~~~~~~~~g~~~~~l~~--~~~~~Y~~-~G~~~~ 127 (127)
T PF13527_consen 80 VDPEYRGRGLGRQLMRALLERARERGVPFIFLFP--SSPPFYRR-FGFEYA 127 (127)
T ss_dssp E-GGGTTSSHHHHHHHHHHHHHHHTT-SEEEEE---SSHHHHHH-TTEEEE
T ss_pred ECHHHcCCCHHHHHHHHHHHHHHhCCCCEEEEec--CChhhhhc-CCCEEC
Confidence 9999999999999999999999999999999877 34688988 999864
No 17
>PRK07757 acetyltransferase; Provisional
Probab=98.64 E-value=1.2e-07 Score=93.05 Aligned_cols=81 Identities=21% Similarity=0.325 Sum_probs=71.6
Q ss_pred EEEeCCeEEEEEEEEEeCCeeEEEeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEecchhhhHHHHHhccCcEEcC
Q 002000 855 ILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKID 934 (983)
Q Consensus 855 VL~~~~~vVsaA~lri~g~~~AEip~VAT~~~~RgqG~gr~Lv~~IE~~l~~lgV~~LvLpA~~~A~~~w~~kfGF~~v~ 934 (983)
++..+|++||.+.+.+.+.+.++|-.|+|.|+|||+|+|+.|+..+++.+...|+.++++-.. +..||.+ +||+.++
T Consensus 45 i~~~~~~lvG~~~l~~~~~~~~~i~~v~V~p~~rg~Glg~~Ll~~l~~~a~~~g~~~i~~~~~--~~~~Y~k-~GF~~~~ 121 (152)
T PRK07757 45 VAEEEGEIVGCCALHILWEDLAEIRSLAVSEDYRGQGIGRMLVEACLEEARELGVKRVFALTY--QPEFFEK-LGFREVD 121 (152)
T ss_pred EEEECCEEEEEEEEEeccCCceEEEEEEECHHHcCCCHHHHHHHHHHHHHHhCCCCeEEEEeC--cHHHHHH-CCCEEcc
Confidence 446789999999999999899999999999999999999999999999999999999876543 4679988 9999998
Q ss_pred HHHH
Q 002000 935 PELL 938 (983)
Q Consensus 935 ~~~~ 938 (983)
..++
T Consensus 122 ~~~~ 125 (152)
T PRK07757 122 KEAL 125 (152)
T ss_pred cccC
Confidence 7443
No 18
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=98.63 E-value=9.8e-09 Score=116.60 Aligned_cols=123 Identities=28% Similarity=0.694 Sum_probs=80.4
Q ss_pred ccccccccccccC-----CCeeccCCCCCccCcccCCCCCCCCCCccccccccc--------ccc--ccccccccccc--
Q 002000 601 KDNDDLCTICADG-----GNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNM--------FER--KRFLQHDANAV-- 663 (983)
Q Consensus 601 ~~ndd~C~VC~dg-----G~Ll~CD~CprafH~~Cl~l~~vP~g~W~C~~C~~~--------~~~--ek~v~~n~na~-- 663 (983)
++-|+.|.+|... .-+++||+|.-+.|+.|+|+.-+|+|.|+|+.|... |++ .++.....++.
T Consensus 190 d~~d~~C~~c~~t~~eN~naiVfCdgC~i~VHq~CYGI~f~peG~WlCrkCi~~~~~i~~C~fCps~dGaFkqT~dgrW~ 269 (669)
T COG5141 190 DEFDDICTKCTSTHNENSNAIVFCDGCEICVHQSCYGIQFLPEGFWLCRKCIYGEYQIRCCSFCPSSDGAFKQTSDGRWG 269 (669)
T ss_pred hhhhhhhHhccccccCCcceEEEecCcchhhhhhcccceecCcchhhhhhhcccccceeEEEeccCCCCceeeccCCchH
Confidence 3467889999843 349999999999999999999999999999999543 221 12222211110
Q ss_pred -----------ccccccccCchhchhhhhhceeccccccCCcccccccCCCCCCCCCCCceecCC--CCCCccCcccCCc
Q 002000 664 -----------EAGRVSGVDSVEQITKRCIRIVKNLEAELSGCLLCRGCDFSKSGFGPRTILLCD--QCEREFHVGCLKK 730 (983)
Q Consensus 664 -----------a~g~~~Gvd~~eqi~kRC~r~vk~~e~e~~~C~IC~~~dfs~sgf~~~tLL~CD--qCerayHv~CL~~ 730 (983)
..+.....++++.+. -+....++ .+|.+|+..+ ++.++|. .|-++||++|.+.
T Consensus 270 H~iCA~~~pelsF~~l~~~dpI~~i~-----sVs~srwk-l~C~iCk~~~--------GtcIqCs~~nC~~aYHVtCArr 335 (669)
T COG5141 270 HVICAMFNPELSFGHLLSKDPIDNIA-----SVSSSRWK-LGCLICKEFG--------GTCIQCSYFNCTRAYHVTCARR 335 (669)
T ss_pred hHhHHHhcchhccccccccchhhhhc-----ccchhhHh-heeeEEcccC--------cceeeecccchhhhhhhhhhhh
Confidence 011111223332211 01111222 3599999753 6899998 6999999999999
Q ss_pred ccCCccc
Q 002000 731 HKMADLR 737 (983)
Q Consensus 731 ~~m~~Lk 737 (983)
.+..+++
T Consensus 336 ag~f~~~ 342 (669)
T COG5141 336 AGYFDLN 342 (669)
T ss_pred cchhhhh
Confidence 8877765
No 19
>PRK03624 putative acetyltransferase; Provisional
Probab=98.61 E-value=1.4e-07 Score=89.12 Aligned_cols=83 Identities=19% Similarity=0.155 Sum_probs=69.2
Q ss_pred EEEEEEeCCeEEEEEEEEEeCCeeEEEeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEecch---hhhHHHHHhcc
Q 002000 852 YCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAA---EEAESIWTDKF 928 (983)
Q Consensus 852 y~~VL~~~~~vVsaA~lri~g~~~AEip~VAT~~~~RgqG~gr~Lv~~IE~~l~~lgV~~LvLpA~---~~A~~~w~~kf 928 (983)
+.+++..++++||.+.+...+ +.+.+..++|+++|||||||+.|+..+++.++.+|++++.+.+. ..+..+|.+ +
T Consensus 46 ~~~v~~~~~~~vG~~~~~~~~-~~~~i~~i~v~p~~rg~Gig~~ll~~~~~~~~~~~~~~~~~~~~~~N~~~~~~y~k-~ 123 (140)
T PRK03624 46 LFLVAEVGGEVVGTVMGGYDG-HRGWAYYLAVHPDFRGRGIGRALVARLEKKLIARGCPKINLQVREDNDAVLGFYEA-L 123 (140)
T ss_pred eEEEEEcCCcEEEEEEeeccC-CCceEEEEEECHHHhCCCHHHHHHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHHH-c
Confidence 445667889999999876543 45778899999999999999999999999999999999887655 458889987 9
Q ss_pred CcEEcCHH
Q 002000 929 GFKKIDPE 936 (983)
Q Consensus 929 GF~~v~~~ 936 (983)
||+..+..
T Consensus 124 GF~~~~~~ 131 (140)
T PRK03624 124 GYEEQDRI 131 (140)
T ss_pred CCccccEE
Confidence 99976643
No 20
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=98.56 E-value=2.8e-07 Score=106.91 Aligned_cols=85 Identities=15% Similarity=0.249 Sum_probs=73.8
Q ss_pred EEEeCCeEEEEEEEEEeC-CeeEEEeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEecchhhhHHHHHhccCcEEc
Q 002000 855 ILTVNSSVVSAGILRVFG-QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKI 933 (983)
Q Consensus 855 VL~~~~~vVsaA~lri~g-~~~AEip~VAT~~~~RgqG~gr~Lv~~IE~~l~~lgV~~LvLpA~~~A~~~w~~kfGF~~v 933 (983)
|++.++++||++.+..+. ...+||-.++|+++|||||+|++||+.+++.+++.|++++++.+. .+..||.+ +||+.+
T Consensus 326 V~~~dg~iVG~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~l~~~A~~~G~~~l~v~~~-~a~~fY~k-~GF~~~ 403 (429)
T TIGR01890 326 IIEHDGNIIGCAALYPYAEEDCGEMACLAVSPEYQDGGRGERLLAHIEDRARQMGISRLFVLTT-RTGHWFRE-RGFQTA 403 (429)
T ss_pred EEEECCEEEEEEEEEecCCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEeec-chHHHHHH-CCCEEC
Confidence 457899999999998874 468999999999999999999999999999999999999887654 56789987 999999
Q ss_pred CHHHHHHH
Q 002000 934 DPELLSIY 941 (983)
Q Consensus 934 ~~~~~~~~ 941 (983)
+..++..-
T Consensus 404 g~~~l~~~ 411 (429)
T TIGR01890 404 SVDELPEA 411 (429)
T ss_pred ChhhCCHH
Confidence 98654433
No 21
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=98.54 E-value=7.4e-08 Score=97.61 Aligned_cols=51 Identities=27% Similarity=0.771 Sum_probs=37.4
Q ss_pred ccccccc------CCCeeccCCCCCccCcccCC--------CCCCCCCCc--ccccccccccccccc
Q 002000 606 LCTICAD------GGNLLPCDGCPRAFHKECAS--------LSSIPQGDW--YCKYCQNMFERKRFL 656 (983)
Q Consensus 606 ~C~VC~d------gG~Ll~CD~CprafH~~Cl~--------l~~vP~g~W--~C~~C~~~~~~ek~v 656 (983)
.|.+|+. -|.|++|.+|..+||+.||+ +++|-++.+ +|..|.....+++..
T Consensus 1 ~C~~C~~~g~~~~kG~Lv~CQGCs~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQCr~Cig~~~kKD~~ 67 (175)
T PF15446_consen 1 TCDTCGYEGDDRNKGPLVYCQGCSSSYHKACLGPRSQREHLVTKVGDDDFVLQCRRCIGIAHKKDPR 67 (175)
T ss_pred CcccccCCCCCccCCCeEEcCccChHHHhhhcCCccccceeeEEEcCCceEEechhhcChhhcccCC
Confidence 3777752 36799999999999999997 345666665 899997655444333
No 22
>COG2153 ElaA Predicted acyltransferase [General function prediction only]
Probab=98.53 E-value=2.5e-07 Score=92.12 Aligned_cols=117 Identities=26% Similarity=0.286 Sum_probs=89.0
Q ss_pred hhhHHHHHHHHHhhh---hcCCCcccCCCCCCcccchhccccCCCceEecEEEEEEEeCCeEEEEEEEEEeCCeeEE--E
Q 002000 804 PETRLLLSQAVAIFH---DCFDPIVDSISGRDLIPSMVYGRNLRGQEFGGMYCAILTVNSSVVSAGILRVFGQEVAE--L 878 (983)
Q Consensus 804 ~e~~skLa~AL~If~---EcFdPivD~~Sg~DLIp~MVy~~~~~r~df~Gfy~~VL~~~~~vVsaA~lri~g~~~AE--i 878 (983)
.+-+..|..-.+||= .|--|-+| |.|++. .-+.-+++..+|++|++|+|-.-+....+ |
T Consensus 16 ~ely~LlkLRv~VFVVEQ~CPY~E~D---g~Dl~~-------------~~~Hl~~~~~~g~LvAyaRLl~~~~~~~~~~i 79 (155)
T COG2153 16 RELYELLKLRVDVFVVEQNCPYPELD---GKDLLG-------------DTRHLLGWTPDGELVAYARLLPPGAEYEEVSI 79 (155)
T ss_pred HHHHHHHHhheeEEEEecCCCCcCcC---Cccccc-------------ccceEEEEcCCCeEEEEEecCCCCCCcCceee
Confidence 455556666566653 34444444 566654 22333444559999999999888876666 9
Q ss_pred eeeEeecCcccCChhHHHHHHHHHHhhhcC-ccEEEecchhhhHHHHHhccCcEEcCHHH
Q 002000 879 PLVATSKINHGKGYFQLLFACIEKLLSFLR-VKSIVLPAAEEAESIWTDKFGFKKIDPEL 937 (983)
Q Consensus 879 p~VAT~~~~RgqG~gr~Lv~~IE~~l~~lg-V~~LvLpA~~~A~~~w~~kfGF~~v~~~~ 937 (983)
.+|+|.+++||+|+|+.||....+.+.... =+-+.|.|+..++.||.. |||.+++++-
T Consensus 80 GRV~v~~~~RG~glG~~Lm~~AL~~~~~~~p~~~v~l~AQahLq~fYa~-~GFv~~~e~y 138 (155)
T COG2153 80 GRVIVSPAARGQGLGQQLMEKALETAGREWPDKPVYLGAQAHLQDFYAS-FGFVRVGEEY 138 (155)
T ss_pred eeEEECHhhhccchhHHHHHHHHHHHHhhCCCCCeEEehHHHHHHHHHH-hCcEEcCchh
Confidence 999999999999999999987777766655 667999999999999999 9999999864
No 23
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=98.51 E-value=3e-07 Score=103.67 Aligned_cols=81 Identities=17% Similarity=0.204 Sum_probs=72.6
Q ss_pred cEEEEEEEeCCeEEEEEEEEEeCCeeEEEeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEecchhhhHHHHHhccC
Q 002000 850 GMYCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFG 929 (983)
Q Consensus 850 Gfy~~VL~~~~~vVsaA~lri~g~~~AEip~VAT~~~~RgqG~gr~Lv~~IE~~l~~lgV~~LvLpA~~~A~~~w~~kfG 929 (983)
-.|+++++.+|++||+|++ .|. .|..|||+++|||+|+|+.||.++++.+...|+..+++.+.+.+..||.+ +|
T Consensus 30 ~d~~vv~~~~~~lVg~g~l--~g~---~ik~vaV~~~~rG~Glg~~L~~~L~~~a~~~G~~~l~l~Tk~~~~~fy~k-lG 103 (332)
T TIGR00124 30 LEIFIAVYEDEEIIGCGGI--AGN---VIKCVAIDESLRGEGLALQLMTELENLAYELGRFHLFIFTKPEYAALFEY-CG 103 (332)
T ss_pred CCEEEEEEECCEEEEEEEE--ecC---EEEEEEEcHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEECchHHHHHHH-cC
Confidence 3567778899999999997 342 48899999999999999999999999999999999999999999999887 99
Q ss_pred cEEcCHH
Q 002000 930 FKKIDPE 936 (983)
Q Consensus 930 F~~v~~~ 936 (983)
|..+...
T Consensus 104 F~~i~~~ 110 (332)
T TIGR00124 104 FKTLAEA 110 (332)
T ss_pred CEEeeee
Confidence 9998863
No 24
>PRK10975 TDP-fucosamine acetyltransferase; Provisional
Probab=98.49 E-value=5e-07 Score=93.06 Aligned_cols=85 Identities=12% Similarity=0.056 Sum_probs=71.6
Q ss_pred cEEEEEEEeCCeEEEEEEEEEeCCeeEEEeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEecch---hhhHHHHHh
Q 002000 850 GMYCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAA---EEAESIWTD 926 (983)
Q Consensus 850 Gfy~~VL~~~~~vVsaA~lri~g~~~AEip~VAT~~~~RgqG~gr~Lv~~IE~~l~~lgV~~LvLpA~---~~A~~~w~~ 926 (983)
.++.++...++++||.+.+...+...++|-.++|.++|||||+|+.|+..+++.+...|+.++++.+. ..+..+|++
T Consensus 101 ~~~~v~~~~~g~~vG~~~l~~~~~~~~~i~~~~V~p~~rg~Gig~~Ll~~~~~~a~~~g~~~i~l~v~~~N~~a~~~yek 180 (194)
T PRK10975 101 HQCLLLRDASGQIQGFVTLRELNDTDARIGLLAVFPGAQGRGIGARLMQAALNWCQARGLTRLRVATQMGNLAALRLYIR 180 (194)
T ss_pred CcEEEEEcCCCCEEEEEEEEecCCCceEEEEEEEChhhcCCCHHHHHHHHHHHHHHHcCCCEEEEEeCCCcHHHHHHHHH
Confidence 33434444678999999998776677999999999999999999999999999999999999987754 458999987
Q ss_pred ccCcEEcCH
Q 002000 927 KFGFKKIDP 935 (983)
Q Consensus 927 kfGF~~v~~ 935 (983)
+||...+.
T Consensus 181 -~Gf~~~~~ 188 (194)
T PRK10975 181 -SGANIEST 188 (194)
T ss_pred -CCCeEeEE
Confidence 99997653
No 25
>TIGR01575 rimI ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database.
Probab=98.49 E-value=6.4e-07 Score=83.91 Aligned_cols=80 Identities=18% Similarity=0.218 Sum_probs=68.4
Q ss_pred EEEEeCCeEEEEEEEEEeCCeeEEEeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEec---chhhhHHHHHhccCc
Q 002000 854 AILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLP---AAEEAESIWTDKFGF 930 (983)
Q Consensus 854 ~VL~~~~~vVsaA~lri~g~~~AEip~VAT~~~~RgqG~gr~Lv~~IE~~l~~lgV~~LvLp---A~~~A~~~w~~kfGF 930 (983)
++++.++++||.+.+.... +.+.+-.++|.++|||||+|+.|+.++++.+...|+.++++. ....+..+|++ +||
T Consensus 34 ~~~~~~~~~vg~~~~~~~~-~~~~i~~~~v~~~~rg~G~g~~ll~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~~-~Gf 111 (131)
T TIGR01575 34 LLARIGGKVVGYAGVQIVL-DEAHILNIAVKPEYQGQGIGRALLRELIDEAKGRGVNEIFLEVRVSNIAAQALYKK-LGF 111 (131)
T ss_pred EEEecCCeEEEEEEEEecC-CCeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCeEEEEEecccHHHHHHHHH-cCC
Confidence 3455689999999987644 457888999999999999999999999999999999999884 45568899988 999
Q ss_pred EEcCH
Q 002000 931 KKIDP 935 (983)
Q Consensus 931 ~~v~~ 935 (983)
+.++.
T Consensus 112 ~~~~~ 116 (131)
T TIGR01575 112 NEIAI 116 (131)
T ss_pred Ccccc
Confidence 98865
No 26
>TIGR02382 wecD_rffC TDP-D-fucosamine acetyltransferase. This model represents the WecD protein (Formerly RffC) for the biosynthesis of enterobacterial common antigen (ECA), an outer leaflet, outer membrane glycolipid with a trisaccharide repeat unit. WecD is a member of the GNAT family of acetytransferases (pfam00583).
Probab=98.47 E-value=6.1e-07 Score=92.44 Aligned_cols=80 Identities=11% Similarity=0.032 Sum_probs=70.0
Q ss_pred EEEeCCeEEEEEEEEEeCCeeEEEeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEecch---hhhHHHHHhccCcE
Q 002000 855 ILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAA---EEAESIWTDKFGFK 931 (983)
Q Consensus 855 VL~~~~~vVsaA~lri~g~~~AEip~VAT~~~~RgqG~gr~Lv~~IE~~l~~lgV~~LvLpA~---~~A~~~w~~kfGF~ 931 (983)
+...+|++||.+.+.......++|-.+++.++|||+|+|+.|+.++++.+..+|+.+|.+... ..|..||.+ +||+
T Consensus 103 ~~~~~g~iiG~i~l~~~~~~~~~i~~l~V~p~~rGkG~G~~ll~~~~~~a~~~g~~~I~l~v~~~N~~A~~~Y~k-lGF~ 181 (191)
T TIGR02382 103 LRDASGDPRGYVTLRELNDTDARIGLLAVFPGAQSRGIGAELMQTALNWCYARGLTRLRVATQMGNTAALRLYIR-SGAN 181 (191)
T ss_pred EEccCCeEEEEEEEEecCCCceEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHH-cCCc
Confidence 445688999999998776667899999999999999999999999999999999999998743 458999998 9998
Q ss_pred EcCH
Q 002000 932 KIDP 935 (983)
Q Consensus 932 ~v~~ 935 (983)
....
T Consensus 182 ~~~~ 185 (191)
T TIGR02382 182 IEST 185 (191)
T ss_pred cccc
Confidence 7653
No 27
>PRK05279 N-acetylglutamate synthase; Validated
Probab=98.46 E-value=5.7e-07 Score=104.55 Aligned_cols=85 Identities=18% Similarity=0.267 Sum_probs=73.4
Q ss_pred EEEEeCCeEEEEEEEEEeC-CeeEEEeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEecchhhhHHHHHhccCcEE
Q 002000 854 AILTVNSSVVSAGILRVFG-QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKK 932 (983)
Q Consensus 854 ~VL~~~~~vVsaA~lri~g-~~~AEip~VAT~~~~RgqG~gr~Lv~~IE~~l~~lgV~~LvLpA~~~A~~~w~~kfGF~~ 932 (983)
++++.++++||++.+..+. ...++|..++|+++|||||+|++||.++++.++..|+.++++.+ ..|..||.+ +||+.
T Consensus 337 ~va~~dg~iVG~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~l~~~a~~~g~~~l~l~~-~~a~~fY~k-~GF~~ 414 (441)
T PRK05279 337 TVIERDGLIIGCAALYPFPEEKMGEMACLAVHPDYRGSGRGERLLKRIEQRARQLGLKRLFVLT-TRTAHWFLE-RGFVP 414 (441)
T ss_pred EEEEECCEEEEEEEEEEcCCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEec-chHHHHHHH-CcCEE
Confidence 3567899999999887654 36899999999999999999999999999999999999998766 468899987 99999
Q ss_pred cCHHHHHH
Q 002000 933 IDPELLSI 940 (983)
Q Consensus 933 v~~~~~~~ 940 (983)
++.+++..
T Consensus 415 ~g~~~~~~ 422 (441)
T PRK05279 415 VDVDDLPE 422 (441)
T ss_pred CChhhCcH
Confidence 99855443
No 28
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional
Probab=98.41 E-value=7e-07 Score=108.03 Aligned_cols=82 Identities=15% Similarity=0.203 Sum_probs=73.4
Q ss_pred EEEEeCCeEEEEEEEEEeCCeeEEEeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEecchhhhHHHHHhccCcEEc
Q 002000 854 AILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKI 933 (983)
Q Consensus 854 ~VL~~~~~vVsaA~lri~g~~~AEip~VAT~~~~RgqG~gr~Lv~~IE~~l~~lgV~~LvLpA~~~A~~~w~~kfGF~~v 933 (983)
+|++.+|++||.+.+.....+.++|..++|+|+|||||+|+.||+.+++.++..|++++++.+. +..||++ +||...
T Consensus 506 ~Va~~~g~IVG~~~l~~~~~~~~~I~~i~V~P~~rGkGIGk~Ll~~l~~~ak~~g~~~i~l~~~--a~~FYek-~GF~~~ 582 (614)
T PRK12308 506 AVAEHHGEVTGCASLYIYDSGLAEIRSLGVEAGWQVQGQGSALVQYLVEKARQMAIKKVFVLTR--VPEFFMK-QGFSPT 582 (614)
T ss_pred EEEEECCEEEEEEEEEEcCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEeeC--cHHHHHH-CCCEEC
Confidence 4567899999999998877778999999999999999999999999999999999999988653 5789988 999999
Q ss_pred CHHHH
Q 002000 934 DPELL 938 (983)
Q Consensus 934 ~~~~~ 938 (983)
+...+
T Consensus 583 ~~~~~ 587 (614)
T PRK12308 583 SKSLL 587 (614)
T ss_pred CcccC
Confidence 87654
No 29
>PRK09491 rimI ribosomal-protein-alanine N-acetyltransferase; Provisional
Probab=98.41 E-value=1.7e-06 Score=84.49 Aligned_cols=84 Identities=20% Similarity=0.196 Sum_probs=70.7
Q ss_pred cEEEEEEEeCCeEEEEEEEEEeCCeeEEEeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEecc---hhhhHHHHHh
Q 002000 850 GMYCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPA---AEEAESIWTD 926 (983)
Q Consensus 850 Gfy~~VL~~~~~vVsaA~lri~g~~~AEip~VAT~~~~RgqG~gr~Lv~~IE~~l~~lgV~~LvLpA---~~~A~~~w~~ 926 (983)
+|+..++..++++||.+.++.... .+++-.++|.++|||+|+|+.|+..+++.+...|+..+++.+ -..+..+|++
T Consensus 39 ~~~~~~~~~~~~~vG~~~~~~~~~-~~~~~~i~v~~~~rg~G~g~~ll~~~~~~~~~~~~~~~~~~~~~~N~~a~~~y~k 117 (146)
T PRK09491 39 RYLNLKLTVNGQMAAFAITQVVLD-EATLFNIAVDPDYQRQGLGRALLEHLIDELEKRGVATLWLEVRASNAAAIALYES 117 (146)
T ss_pred CceEEEEEECCeEEEEEEEEeecC-ceEEEEEEECHHHccCCHHHHHHHHHHHHHHHCCCcEEEEEEccCCHHHHHHHHH
Confidence 455556678899999999876654 466788999999999999999999999999999999988753 4568899999
Q ss_pred ccCcEEcCH
Q 002000 927 KFGFKKIDP 935 (983)
Q Consensus 927 kfGF~~v~~ 935 (983)
+||+..+.
T Consensus 118 -~Gf~~~~~ 125 (146)
T PRK09491 118 -LGFNEVTI 125 (146)
T ss_pred -cCCEEeee
Confidence 99998775
No 30
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.40 E-value=1.6e-07 Score=110.52 Aligned_cols=46 Identities=41% Similarity=1.193 Sum_probs=41.6
Q ss_pred cccccccccCCCe---eccCCCCCccCcccCC----CCCCCCCCccccccccc
Q 002000 604 DDLCTICADGGNL---LPCDGCPRAFHKECAS----LSSIPQGDWYCKYCQNM 649 (983)
Q Consensus 604 dd~C~VC~dgG~L---l~CD~CprafH~~Cl~----l~~vP~g~W~C~~C~~~ 649 (983)
.++|..|+..|.. +|||+||++||+.||. ...+|.|.|+|+.|...
T Consensus 253 ~~fCsaCn~~~~F~~~i~CD~Cp~sFH~~CLePPl~~eniP~g~W~C~ec~~k 305 (613)
T KOG4299|consen 253 EDFCSACNGSGLFNDIICCDGCPRSFHQTCLEPPLEPENIPPGSWFCPECKIK 305 (613)
T ss_pred HHHHHHhCCccccccceeecCCchHHHHhhcCCCCCcccCCCCccccCCCeee
Confidence 6799999998887 9999999999999995 45889999999999875
No 31
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=98.38 E-value=1e-06 Score=95.71 Aligned_cols=84 Identities=15% Similarity=0.146 Sum_probs=70.5
Q ss_pred EEEEEEEeCCeEEEEEEEEEe-CCeeEEEeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEecchhh---hHHHHHh
Q 002000 851 MYCAILTVNSSVVSAGILRVF-GQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEE---AESIWTD 926 (983)
Q Consensus 851 fy~~VL~~~~~vVsaA~lri~-g~~~AEip~VAT~~~~RgqG~gr~Lv~~IE~~l~~lgV~~LvLpA~~~---A~~~w~~ 926 (983)
.+.++++.+|++||.+++.+. +...+||--++|+|+|||||+|+.||..+++.++..|++++++.+... +..+|.+
T Consensus 158 ~~~~v~~~~g~iVG~~~~~~~~~~~~~eI~~i~V~P~yRG~GiG~~Ll~~l~~~a~~~g~~~l~~~~~~~n~~a~~ly~k 237 (266)
T TIGR03827 158 VVYFGVEDGGKIIALASAEMDPENGNAEMTDFATLPEYRGKGLAKILLAAMEKEMKEKGIRTAYTIARASSYGMNITFAR 237 (266)
T ss_pred cEEEEEEECCEEEEEEEEecCCCCCcEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCcEEEeehhhcchhHHHHHHH
Confidence 344566789999999998553 346799999999999999999999999999999999999999887655 3567876
Q ss_pred ccCcEEcCH
Q 002000 927 KFGFKKIDP 935 (983)
Q Consensus 927 kfGF~~v~~ 935 (983)
+||+..+.
T Consensus 238 -~GF~~~G~ 245 (266)
T TIGR03827 238 -LGYAYGGT 245 (266)
T ss_pred -cCCccccE
Confidence 99997655
No 32
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=98.37 E-value=1.7e-07 Score=116.96 Aligned_cols=123 Identities=25% Similarity=0.596 Sum_probs=79.1
Q ss_pred CccccccccccccC-----CCeeccCCCCCccCcccCCCCCCCCCCccccccccccccc----------ccccccccccc
Q 002000 600 GKDNDDLCTICADG-----GNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMFERK----------RFLQHDANAVE 664 (983)
Q Consensus 600 ~~~ndd~C~VC~dg-----G~Ll~CD~CprafH~~Cl~l~~vP~g~W~C~~C~~~~~~e----------k~v~~n~na~a 664 (983)
..+.|..|.||.++ ..+++||+|..++|+.|+++.-+|+|.|.|..|....++. +++..+.++..
T Consensus 215 ~~~~D~~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cygi~~ipeg~WlCr~Cl~s~~~~v~c~~cp~~~gAFkqt~dgrw 294 (1051)
T KOG0955|consen 215 LLEEDAVCCICLDGECQNSNVIVFCDGCNLAVHQECYGIPFIPEGQWLCRRCLQSPQRPVRCLLCPSKGGAFKQTDDGRW 294 (1051)
T ss_pred ccCCCccceeecccccCCCceEEEcCCCcchhhhhccCCCCCCCCcEeehhhccCcCcccceEeccCCCCcceeccCCce
Confidence 34678899999975 3489999999999999999999999999999997653321 11211111110
Q ss_pred c--------cc-----ccccCchhchhhhhhceeccccccCCcccccccCCCCCCCCCCCceecCC--CCCCccCcccCC
Q 002000 665 A--------GR-----VSGVDSVEQITKRCIRIVKNLEAELSGCLLCRGCDFSKSGFGPRTILLCD--QCEREFHVGCLK 729 (983)
Q Consensus 665 ~--------g~-----~~Gvd~~eqi~kRC~r~vk~~e~e~~~C~IC~~~dfs~sgf~~~tLL~CD--qCerayHv~CL~ 729 (983)
+ +. ....+++ ..++.+....+. ..|++|+..+ .+..++|. .|-.|||++|.+
T Consensus 295 ~Hv~caiwipev~F~nt~~~E~I-----~~i~~i~~aRwk-L~cy~cK~~~-------~gaciqcs~~~c~~a~hvtca~ 361 (1051)
T KOG0955|consen 295 AHVVCAIWIPEVSFANTVFLEPI-----DSIENIPPARWK-LTCYICKQKG-------LGACIQCSKANCYTAFHVTCAR 361 (1051)
T ss_pred eeeehhhcccccccccchhhccc-----cchhcCcHhhhh-ceeeeeccCC-------CCcceecchhhhhhhhhhhhHh
Confidence 0 00 0000111 111222211222 3599999753 46788998 799999999998
Q ss_pred cccCCc
Q 002000 730 KHKMAD 735 (983)
Q Consensus 730 ~~~m~~ 735 (983)
..++..
T Consensus 362 ~agl~m 367 (1051)
T KOG0955|consen 362 RAGLYM 367 (1051)
T ss_pred hcCceE
Confidence 876543
No 33
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.34 E-value=1e-07 Score=113.01 Aligned_cols=132 Identities=27% Similarity=0.535 Sum_probs=78.5
Q ss_pred cccccccccC--CCee-ccCCCCCccCcccCC-CCCCCCCCccccccccccccccccccccc--ccccccccccCchhch
Q 002000 604 DDLCTICADG--GNLL-PCDGCPRAFHKECAS-LSSIPQGDWYCKYCQNMFERKRFLQHDAN--AVEAGRVSGVDSVEQI 677 (983)
Q Consensus 604 dd~C~VC~dg--G~Ll-~CD~CprafH~~Cl~-l~~vP~g~W~C~~C~~~~~~ek~v~~n~n--a~a~g~~~Gvd~~eqi 677 (983)
...|.+|... ..|+ .=..|..-||..|++ |..+ .--|+.|+..|.+-.....-.+ .+..- -++..+++
T Consensus 123 ~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~---aqTCPiDR~EF~~v~V~eS~~~~~~vR~l---P~EEs~~~ 196 (1134)
T KOG0825|consen 123 ENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRC---AQTCPVDRGEFGEVKVLESTGIEANVRCL---PSEESENI 196 (1134)
T ss_pred hhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhh---cccCchhhhhhheeeeeccccccceeEec---chhhhhhh
Confidence 3467777632 2222 224588899999984 3333 3469999887755433322111 11000 00111111
Q ss_pred hhh----hhceeccccccCCcccccccCCCCCCCCCCCceecCCCCCCc-cCcccCCcccCCccccCCCCCeEecCCchh
Q 002000 678 TKR----CIRIVKNLEAELSGCLLCRGCDFSKSGFGPRTILLCDQCERE-FHVGCLKKHKMADLRELPKGKWFCCMDCSR 752 (983)
Q Consensus 678 ~kR----C~r~vk~~e~e~~~C~IC~~~dfs~sgf~~~tLL~CDqCera-yHv~CL~~~~m~~LkelP~g~WfC~~~C~~ 752 (983)
+.. -..-......+...|.||..++ .+..||+||.|... ||++||++ +|.++|-+.||| .+|.-
T Consensus 197 ~e~~~d~~~d~~~~~~~E~~~C~IC~~~D------pEdVLLLCDsCN~~~YH~YCLDP----dl~eiP~~eWYC-~NC~d 265 (1134)
T KOG0825|consen 197 LEKGGDEKQDQISGLSQEEVKCDICTVHD------PEDVLLLCDSCNKVYYHVYCLDP----DLSESPVNEWYC-TNCSL 265 (1134)
T ss_pred hhhccccccccccCcccccccceeeccCC------hHHhheeecccccceeeccccCc----ccccccccceec-Ccchh
Confidence 100 0000111233445699999886 56789999999988 99999998 788999999999 89963
No 34
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.34 E-value=2.5e-07 Score=108.91 Aligned_cols=50 Identities=38% Similarity=0.969 Sum_probs=42.2
Q ss_pred cccccccCCCCCCCCCCCceecCCCCCCccCcccCCcccCCccccCCCCCeEecCCchh
Q 002000 694 GCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCSR 752 (983)
Q Consensus 694 ~C~IC~~~dfs~sgf~~~tLL~CDqCerayHv~CL~~~~m~~LkelP~g~WfC~~~C~~ 752 (983)
+|..|++.+ .| ..+|+||.|++.||+.||.|+ -..+.+|.|.||| +.|..
T Consensus 255 fCsaCn~~~----~F--~~~i~CD~Cp~sFH~~CLePP--l~~eniP~g~W~C-~ec~~ 304 (613)
T KOG4299|consen 255 FCSACNGSG----LF--NDIICCDGCPRSFHQTCLEPP--LEPENIPPGSWFC-PECKI 304 (613)
T ss_pred HHHHhCCcc----cc--ccceeecCCchHHHHhhcCCC--CCcccCCCCcccc-CCCee
Confidence 699999876 33 578999999999999999985 2467899999999 78853
No 35
>PRK10140 putative acetyltransferase YhhY; Provisional
Probab=98.32 E-value=2.9e-06 Score=83.12 Aligned_cols=85 Identities=18% Similarity=0.234 Sum_probs=69.0
Q ss_pred EEEEEEEeCCeEEEEEEEEEeC----CeeEEEeeeEeecCcccCChhHHHHHHHHHHhhh-cCccEEEecch---hhhHH
Q 002000 851 MYCAILTVNSSVVSAGILRVFG----QEVAELPLVATSKINHGKGYFQLLFACIEKLLSF-LRVKSIVLPAA---EEAES 922 (983)
Q Consensus 851 fy~~VL~~~~~vVsaA~lri~g----~~~AEip~VAT~~~~RgqG~gr~Lv~~IE~~l~~-lgV~~LvLpA~---~~A~~ 922 (983)
.+.+++..+|++||.+.+.... ...+++. +++.++|||+|+|+.|+..+++.+.. +|..++.+... ..|..
T Consensus 51 ~~~~v~~~~~~~vG~~~~~~~~~~~~~~~~~~~-~~v~p~~rg~Gig~~ll~~l~~~~~~~~~~~~i~l~v~~~N~~a~~ 129 (162)
T PRK10140 51 IKQLVACIDGDVVGHLTIDVQQRPRRSHVADFG-ICVDSRWKNRGVASALMREMIEMCDNWLRVDRIELTVFVDNAPAIK 129 (162)
T ss_pred cEEEEEEECCEEEEEEEEecccccccceEEEEE-EEECHHHcCCCHHHHHHHHHHHHHHhhCCccEEEEEEEcCCHHHHH
Confidence 3556667889999999987542 3456664 89999999999999999999999988 79888777654 56889
Q ss_pred HHHhccCcEEcCHHH
Q 002000 923 IWTDKFGFKKIDPEL 937 (983)
Q Consensus 923 ~w~~kfGF~~v~~~~ 937 (983)
+|++ +||...+...
T Consensus 130 ~y~k-~GF~~~g~~~ 143 (162)
T PRK10140 130 VYKK-YGFEIEGTGK 143 (162)
T ss_pred HHHH-CCCEEEeecc
Confidence 9987 9999887743
No 36
>PRK13688 hypothetical protein; Provisional
Probab=98.30 E-value=2.2e-06 Score=86.98 Aligned_cols=76 Identities=20% Similarity=0.293 Sum_probs=59.9
Q ss_pred EEEeCCeEEEEEEEEEeC----------CeeEEEeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEecchhhhHHHH
Q 002000 855 ILTVNSSVVSAGILRVFG----------QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIW 924 (983)
Q Consensus 855 VL~~~~~vVsaA~lri~g----------~~~AEip~VAT~~~~RgqG~gr~Lv~~IE~~l~~lgV~~LvLpA~~~A~~~w 924 (983)
++..++++||++.+...+ .+.++|..++|.++|||||+|++||..+++. ++. +.+.+...|..||
T Consensus 49 ~~~~~~~~VG~~~l~~~dg~~~~~~~~~~~~~~L~~l~V~p~~rgkGiG~~Ll~~a~~~----~~~-~~~~~~~~a~~FY 123 (156)
T PRK13688 49 GIYYGDSLVARMSLYKKGGVEEPYFEDTQDYLELWKLEVLPKYQNRGYGEMLVDFAKSF----QLP-IKTIARNKSKDFW 123 (156)
T ss_pred EEEECCEEEEEEEEEecCCcccccccCCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHh----CCe-EEEEeccchHHHH
Confidence 346788999988875422 4678999999999999999999999876543 443 4455667889999
Q ss_pred HhccCcEEcCHH
Q 002000 925 TDKFGFKKIDPE 936 (983)
Q Consensus 925 ~~kfGF~~v~~~ 936 (983)
.+ +||..++..
T Consensus 124 ~k-~GF~~~~~~ 134 (156)
T PRK13688 124 LK-LGFTPVEYK 134 (156)
T ss_pred Hh-CCCEEeEEe
Confidence 98 999988765
No 37
>PHA00673 acetyltransferase domain containing protein
Probab=98.29 E-value=4.4e-06 Score=84.82 Aligned_cols=84 Identities=13% Similarity=0.085 Sum_probs=73.3
Q ss_pred EEEEEEEeCCeEEEEEEEEEeC------CeeEEEeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEecchhh--hHH
Q 002000 851 MYCAILTVNSSVVSAGILRVFG------QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEE--AES 922 (983)
Q Consensus 851 fy~~VL~~~~~vVsaA~lri~g------~~~AEip~VAT~~~~RgqG~gr~Lv~~IE~~l~~lgV~~LvLpA~~~--A~~ 922 (983)
-..+|.+.+|++||++.+.+.. ...+.|-.|-|++++||||+|++||..+|+.++..|...|.+.|.++ .+.
T Consensus 55 ~~llVa~~~g~vVG~~~l~~~p~l~~~~~~~~~Ie~l~V~~~~RGqGIG~~Ll~~A~~~Ar~~Gc~~lyis~~p~~~tv~ 134 (154)
T PHA00673 55 AHFLGVFRGEELVGFACLLVTPVPHFKGQLIGTTESIFVAAAHRPGGAGMALLRATEALARDLGATGLYVSGPTEGRLVQ 134 (154)
T ss_pred cEEEEEEECCEEEEEEEEEEecCCccCCccEEEEEEEEEChhccCCCHHHHHHHHHHHHHHHCCCCEEEEecCCCccchH
Confidence 3445667899999999998754 35778999999999999999999999999999999999999999977 799
Q ss_pred HHHhccCcEEcCH
Q 002000 923 IWTDKFGFKKIDP 935 (983)
Q Consensus 923 ~w~~kfGF~~v~~ 935 (983)
||.+ .|++....
T Consensus 135 fy~~-~g~~~~~~ 146 (154)
T PHA00673 135 LLPA-AGYRETNR 146 (154)
T ss_pred HHHh-CCchhhch
Confidence 9999 99986543
No 38
>PRK09831 putative acyltransferase; Provisional
Probab=98.29 E-value=2.1e-06 Score=84.47 Aligned_cols=73 Identities=14% Similarity=0.156 Sum_probs=61.7
Q ss_pred EEEEeCCeEEEEEEEEEeCCeeEEEeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEecchhhhHHHHHhccCcEEc
Q 002000 854 AILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKI 933 (983)
Q Consensus 854 ~VL~~~~~vVsaA~lri~g~~~AEip~VAT~~~~RgqG~gr~Lv~~IE~~l~~lgV~~LvLpA~~~A~~~w~~kfGF~~v 933 (983)
+|+..+|++||.+.+.. +.+..++|.++|||||+|++||..+++.+.. +.+.+...|..||.+ +||..+
T Consensus 56 ~v~~~~~~iiG~~~~~~-----~~i~~~~v~p~~~g~GiG~~Ll~~~~~~~~~-----l~v~~~~~a~~~Y~k-~Gf~~~ 124 (147)
T PRK09831 56 RVAVINAQPVGFITCIE-----HYIDMLFVDPEYTRRGVASALLKPLIKSESE-----LTVDASITAKPFFER-YGFQTV 124 (147)
T ss_pred EEEEECCEEEEEEEehh-----ceeeeEEECHHHcCCCHHHHHHHHHHHHhhh-----eEeecchhhHHHHHH-CCCEEe
Confidence 35578999999988742 4677899999999999999999999998876 455666789999999 999999
Q ss_pred CHHH
Q 002000 934 DPEL 937 (983)
Q Consensus 934 ~~~~ 937 (983)
+...
T Consensus 125 g~~~ 128 (147)
T PRK09831 125 KQQR 128 (147)
T ss_pred eccc
Confidence 8865
No 39
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.29 E-value=1.7e-07 Score=100.95 Aligned_cols=91 Identities=26% Similarity=0.559 Sum_probs=67.4
Q ss_pred cEEeecceecCCCeeecCCCCccCccceeeccCccCCCCCcceEEccCCCchHHHHHhhccCCCCCCccccccccccccC
Q 002000 534 GQKLLEGYKNGLGIICHCCNSEVSPSQFEAHAGWSSRRKPYAHIYTSNGVSLHQLAISLSKGRQYPGKDNDDLCTICADG 613 (983)
Q Consensus 534 gq~ll~G~~~g~GI~C~CC~~~~SpSeFE~HAG~~srrkPy~~I~lsnG~SL~dl~~~l~~~~k~~~~~ndd~C~VC~dg 613 (983)
|+.-....+..+-|+|..|....+|+..+......+.-+.|.+-. -....|.||+.+
T Consensus 267 ~~~~~~~~r~~S~I~C~~C~~~~HP~Ci~M~~elv~~~KTY~W~C-----------------------~~C~lC~IC~~P 323 (381)
T KOG1512|consen 267 IQTNIIQSRRNSWIVCKPCATRPHPYCVAMIPELVGQYKTYFWKC-----------------------SSCELCRICLGP 323 (381)
T ss_pred chhhhhhhhhccceeecccccCCCCcchhcCHHHHhHHhhcchhh-----------------------cccHhhhccCCc
Confidence 333333445678899999999999998876655433333332221 245679999965
Q ss_pred ---CCeeccCCCCCccCcccCCCCCCCCCCcccc-ccc
Q 002000 614 ---GNLLPCDGCPRAFHKECASLSSIPQGDWYCK-YCQ 647 (983)
Q Consensus 614 ---G~Ll~CD~CprafH~~Cl~l~~vP~g~W~C~-~C~ 647 (983)
.++++||.|+|+||..|++|..+|.|.|.|. .|.
T Consensus 324 ~~E~E~~FCD~CDRG~HT~CVGL~~lP~G~WICD~~C~ 361 (381)
T KOG1512|consen 324 VIESEHLFCDVCDRGPHTLCVGLQDLPRGEWICDMRCR 361 (381)
T ss_pred ccchheeccccccCCCCccccccccccCccchhhhHHH
Confidence 6799999999999999999999999999998 353
No 40
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=98.28 E-value=1.4e-07 Score=101.24 Aligned_cols=85 Identities=28% Similarity=0.608 Sum_probs=64.1
Q ss_pred cCCCeeecCCCCccCccceeeccCccCCCCCcceEEccCCCchHHHHHhhccCCCCCCccccccccccccC---CCeecc
Q 002000 543 NGLGIICHCCNSEVSPSQFEAHAGWSSRRKPYAHIYTSNGVSLHQLAISLSKGRQYPGKDNDDLCTICADG---GNLLPC 619 (983)
Q Consensus 543 ~g~GI~C~CC~~~~SpSeFE~HAG~~srrkPy~~I~lsnG~SL~dl~~~l~~~~k~~~~~ndd~C~VC~dg---G~Ll~C 619 (983)
-.+.|-|+-|++.-+||...-.+.+-+.-+.|.+.. .....|.+|+.. ++|++|
T Consensus 243 peelvscsdcgrsghpsclqft~nm~~avk~yrwqc-----------------------ieck~csicgtsenddqllfc 299 (336)
T KOG1244|consen 243 PEELVSCSDCGRSGHPSCLQFTANMIAAVKTYRWQC-----------------------IECKYCSICGTSENDDQLLFC 299 (336)
T ss_pred chhhcchhhcCCCCCcchhhhhHHHHHHHHhheeee-----------------------eecceeccccCcCCCceeEee
Confidence 345678999999988887766665544333344332 245689999943 569999
Q ss_pred CCCCCccCcccCC--CCCCCCCCcccccccccc
Q 002000 620 DGCPRAFHKECAS--LSSIPQGDWYCKYCQNMF 650 (983)
Q Consensus 620 D~CprafH~~Cl~--l~~vP~g~W~C~~C~~~~ 650 (983)
|.|+|+||++||. +...|+|.|.|..|...+
T Consensus 300 ddcdrgyhmyclsppm~eppegswsc~KOG~~~ 332 (336)
T KOG1244|consen 300 DDCDRGYHMYCLSPPMVEPPEGSWSCHLCLEEL 332 (336)
T ss_pred cccCCceeeEecCCCcCCCCCCchhHHHHHHHH
Confidence 9999999999994 778899999999997544
No 41
>KOG3396 consensus Glucosamine-phosphate N-acetyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=98.25 E-value=2.3e-06 Score=84.44 Aligned_cols=84 Identities=17% Similarity=0.241 Sum_probs=75.1
Q ss_pred EEEEEEEe--CCeEEEEEEEEEe-----CC-eeEEEeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEecchhhhHH
Q 002000 851 MYCAILTV--NSSVVSAGILRVF-----GQ-EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAES 922 (983)
Q Consensus 851 fy~~VL~~--~~~vVsaA~lri~-----g~-~~AEip~VAT~~~~RgqG~gr~Lv~~IE~~l~~lgV~~LvLpA~~~A~~ 922 (983)
+|.+|+++ -++|||+|+|.|. +- --.+|-=|+|+++||||++|+.|+..+-.++.++|+-++.|.-.++..+
T Consensus 53 Y~i~Vied~~s~~vigtatL~IE~KfIh~~g~rGhiEDVVV~~~~rgk~LGkllv~~Lv~l~k~lgcYKi~LdC~~~nv~ 132 (150)
T KOG3396|consen 53 YYIVVIEDKESEKVIGTATLFIERKFIHGCGSRGHIEDVVVDSEYRGKQLGKLLVETLVDLAKSLGCYKIILDCDPKNVK 132 (150)
T ss_pred EEEEEEEeCCcCeEEEEEEEEEehhhhhcccccCceeEEEeChhhhhhHHhHHHHHHHHHHHHhcCcEEEEEecchhhhh
Confidence 78888886 4899999999873 32 3567888999999999999999999999999999999999999999999
Q ss_pred HHHhccCcEEcCH
Q 002000 923 IWTDKFGFKKIDP 935 (983)
Q Consensus 923 ~w~~kfGF~~v~~ 935 (983)
||.+ |||+..+.
T Consensus 133 FYeK-cG~s~~~~ 144 (150)
T KOG3396|consen 133 FYEK-CGYSNAGN 144 (150)
T ss_pred HHHH-cCccccch
Confidence 9999 99997763
No 42
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=98.19 E-value=6.5e-07 Score=106.21 Aligned_cols=144 Identities=23% Similarity=0.500 Sum_probs=88.5
Q ss_pred cccccccccccC-----CCeeccCCCCCccCcccCCCCCCCCCCcccccccccccccc--------cccccccccccccc
Q 002000 602 DNDDLCTICADG-----GNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMFERKR--------FLQHDANAVEAGRV 668 (983)
Q Consensus 602 ~ndd~C~VC~dg-----G~Ll~CD~CprafH~~Cl~l~~vP~g~W~C~~C~~~~~~ek--------~v~~n~na~a~g~~ 668 (983)
+++-.|.||..+ .++++||.|.-..|+.|+++..+|+|.|.|..|...+++.. .+.....+..-..+
T Consensus 269 dedviCDvCrspD~e~~neMVfCd~Cn~cVHqaCyGIle~p~gpWlCr~Calg~~ppCvLCPkkGGamK~~~sgT~wAHv 348 (893)
T KOG0954|consen 269 DEDVICDVCRSPDSEEANEMVFCDKCNICVHQACYGILEVPEGPWLCRTCALGIEPPCVLCPKKGGAMKPTKSGTKWAHV 348 (893)
T ss_pred cccceeceecCCCccccceeEEeccchhHHHHhhhceeecCCCCeeehhccccCCCCeeeccccCCcccccCCCCeeeEe
Confidence 467789999844 56999999999999999999999999999999976654332 23222221100001
Q ss_pred cccCchhchhhhhhcee---------ccccccCCcccccccCCCCCCCCCCCceecCC--CCCCccCcccCCcccCCc--
Q 002000 669 SGVDSVEQITKRCIRIV---------KNLEAELSGCLLCRGCDFSKSGFGPRTILLCD--QCEREFHVGCLKKHKMAD-- 735 (983)
Q Consensus 669 ~Gvd~~eqi~kRC~r~v---------k~~e~e~~~C~IC~~~dfs~sgf~~~tLL~CD--qCerayHv~CL~~~~m~~-- 735 (983)
.=..++.++..-|.... +...+. ..|.+|+.. -+..|+|. .|..+||+.|...+++..
T Consensus 349 sCALwIPEVsie~~ekmePItkfs~IpesRws-lvC~LCk~k--------~GACIqCs~k~C~t~fHv~CA~~aG~~~~~ 419 (893)
T KOG0954|consen 349 SCALWIPEVSIECPEKMEPITKFSHIPESRWS-LVCNLCKVK--------SGACIQCSNKTCRTAFHVTCAFEAGLEMKT 419 (893)
T ss_pred eeeeccceeeccCHhhcCcccccCCCcHHHHH-HHHHHhccc--------CcceEEecccchhhhccchhhhhcCCeeee
Confidence 11112222222222211 100111 129999853 35788997 899999999999987642
Q ss_pred -cccC--CCCCeEecCCchhhHH
Q 002000 736 -LREL--PKGKWFCCMDCSRINS 755 (983)
Q Consensus 736 -Lkel--P~g~WfC~~~C~~I~~ 755 (983)
+.+. -...-|| ..|..+.+
T Consensus 420 ~~~~~D~v~~~s~c-~khs~~~~ 441 (893)
T KOG0954|consen 420 ILKENDEVKFKSYC-SKHSDHRE 441 (893)
T ss_pred eeccCCchhheeec-cccccccc
Confidence 1111 1246788 56665553
No 43
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=98.17 E-value=7.9e-07 Score=107.50 Aligned_cols=155 Identities=26% Similarity=0.486 Sum_probs=98.8
Q ss_pred CCCCccCcccCC--CCCCCCCCcccccccccccccccccccccccccccccccCchhchhhhhhceeccccccCCccccc
Q 002000 621 GCPRAFHKECAS--LSSIPQGDWYCKYCQNMFERKRFLQHDANAVEAGRVSGVDSVEQITKRCIRIVKNLEAELSGCLLC 698 (983)
Q Consensus 621 ~CprafH~~Cl~--l~~vP~g~W~C~~C~~~~~~ek~v~~n~na~a~g~~~Gvd~~eqi~kRC~r~vk~~e~e~~~C~IC 698 (983)
.|+|+||..|++ +..-|+++|.|+.|....-.. .+.++. ....+..+|.+|
T Consensus 1 ~~~r~~~~~~~~p~~~~~~~~~~k~~~~e~~~~~~------------------~~~~~~---------~~~~~~e~c~ic 53 (696)
T KOG0383|consen 1 TCPRAYHRVCLDPKLKEEPEMDPKCPGCESSSAQV------------------EAKDDD---------WDDAEQEACRIC 53 (696)
T ss_pred CCCcccCcCCCCcccccCCcCCccCcchhhccccc------------------ccccCC---------cchhhhhhhhhh
Confidence 489999999996 556678999999997421100 000000 113345679999
Q ss_pred ccCCCCCCCCCCCceecCCCCCCccCcccCCcccCCccccCCCCCeEecCCch--hhHHHHHHhhhhc--cccCc-hhhH
Q 002000 699 RGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCS--RINSVLQNLLVQE--AEKLP-EFHL 773 (983)
Q Consensus 699 ~~~dfs~sgf~~~tLL~CDqCerayHv~CL~~~~m~~LkelP~g~WfC~~~C~--~I~~~LqkLva~g--~e~lp-~sll 773 (983)
... +++|.||.|+.+||..|+.+ ++...|.+.|.|+ .|. ....+.++++.+. +.+.| ...-
T Consensus 54 ~~~---------g~~l~c~tC~~s~h~~cl~~----pl~~~p~~~~~c~-Rc~~p~~~~k~~~il~~~~~~~~~~~~~~~ 119 (696)
T KOG0383|consen 54 ADG---------GELLWCDTCPASFHASCLGP----PLTPQPNGEFICP-RCFCPKNAGKIEKILGWRWKPTPKPREGNQ 119 (696)
T ss_pred cCC---------CcEEEeccccHHHHHHccCC----CCCcCCccceeee-eeccCCCcccccccceeEecCCCCccccCc
Confidence 954 48899999999999999987 5777888889995 882 1112334444432 22222 1111
Q ss_pred HHhhhhhcCccccccccCceeEEccCCCCChhhHHHHHHHHHhh
Q 002000 774 NAIKKYAGNSLETVSDIDVRWRLLSGKAATPETRLLLSQAVAIF 817 (983)
Q Consensus 774 ~~I~k~~e~gle~~~~~~i~W~lL~gk~~s~e~~skLa~AL~If 817 (983)
+.+..+... ....+...++|+.+++.++.|....++...+..+
T Consensus 120 ~~~~~~~~~-~~~~re~~vk~qg~s~~~c~~~~e~~~q~~~~~~ 162 (696)
T KOG0383|consen 120 GVISPRRSN-GIVEREFFVKWQGLSYWHCSWKSELLLQNPLNTL 162 (696)
T ss_pred CccCCcccc-cchhhhcccccccCCccchhHHHHHHhhhhcccc
Confidence 112111122 2235678899999999999988877776555555
No 44
>KOG3139 consensus N-acetyltransferase [General function prediction only]
Probab=98.15 E-value=1.1e-05 Score=81.80 Aligned_cols=73 Identities=16% Similarity=0.165 Sum_probs=62.2
Q ss_pred EEEEEEEEEeC---CeeEEEeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEecch---hhhHHHHHhccCcEEcCH
Q 002000 862 VVSAGILRVFG---QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAA---EEAESIWTDKFGFKKIDP 935 (983)
Q Consensus 862 vVsaA~lri~g---~~~AEip~VAT~~~~RgqG~gr~Lv~~IE~~l~~lgV~~LvLpA~---~~A~~~w~~kfGF~~v~~ 935 (983)
.|||+...-.. ..-++|-.+||+++|||||||++|+..+.+.+++.|...++|.+- ..|..+|.+ |||.....
T Consensus 68 ~VGai~ck~~~~r~~~rgyi~mLaV~~e~Rg~GIg~aLvr~aId~m~~~g~~eVvLeTe~~n~~A~~LY~s-LGF~r~~r 146 (165)
T KOG3139|consen 68 TVGAIVCKLDTHRNTLRGYIAMLAVDSEYRGQGIGKALVRKAIDAMRSRGYSEVVLETEVTNLSALRLYES-LGFKRDKR 146 (165)
T ss_pred eEEEEEEeccccCCcceEEEEEEEechhhccccHHHHHHHHHHHHHHHCCCcEEEEeccccchHHHHHHHh-cCceEecc
Confidence 47776655422 236899999999999999999999999999999999999999865 558999999 99998654
No 45
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=98.14 E-value=1e-05 Score=88.02 Aligned_cols=81 Identities=7% Similarity=0.000 Sum_probs=64.8
Q ss_pred EEEEEEeCCeEEEEEEEEEeCCeeEEEeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEecch-hhhHHHHHhccCc
Q 002000 852 YCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAA-EEAESIWTDKFGF 930 (983)
Q Consensus 852 y~~VL~~~~~vVsaA~lri~g~~~AEip~VAT~~~~RgqG~gr~Lv~~IE~~l~~lgV~~LvLpA~-~~A~~~w~~kfGF 930 (983)
+.+|+..++++||.+.+.......+++-.++|+|+|||||+|++||..+++.+. +--.|++... ..|+.||.+ +||
T Consensus 47 ~~~~~~~~~~~vG~~~~~~~~~~~~~~~~l~V~p~~rg~GiG~~Ll~~~~~~~~--~~~~~~~~~~n~~a~~fy~~-~Gf 123 (292)
T TIGR03448 47 RHLVAVDSDPIVGYANLVPARGTDPAMAELVVHPAHRRRGIGRALIRALLAKGG--GRLRVWAHGDLPAARALASR-LGL 123 (292)
T ss_pred eEEEEEECCEEEEEEEEEcCCCCcceEEEEEECHhhcCCCHHHHHHHHHHHhcc--CceEEEEcCCCHHHHHHHHH-CCC
Confidence 345567889999999988875556788899999999999999999999999875 2234455443 568999998 999
Q ss_pred EEcCH
Q 002000 931 KKIDP 935 (983)
Q Consensus 931 ~~v~~ 935 (983)
..+..
T Consensus 124 ~~~~~ 128 (292)
T TIGR03448 124 VPTRE 128 (292)
T ss_pred EEccE
Confidence 87765
No 46
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=98.12 E-value=8.7e-07 Score=104.56 Aligned_cols=89 Identities=30% Similarity=0.877 Sum_probs=70.6
Q ss_pred ccccccccccC-----CCeeccCCCCCccCcccCC-C-CCC-CCCCcccccccccccccccccccccccccccccccCch
Q 002000 603 NDDLCTICADG-----GNLLPCDGCPRAFHKECAS-L-SSI-PQGDWYCKYCQNMFERKRFLQHDANAVEAGRVSGVDSV 674 (983)
Q Consensus 603 ndd~C~VC~dg-----G~Ll~CD~CprafH~~Cl~-l-~~v-P~g~W~C~~C~~~~~~ek~v~~n~na~a~g~~~Gvd~~ 674 (983)
...+|.+|+.. |.++.|..|...||.+|+. | ... -.+-|.|+.|+.
T Consensus 17 ~~~mc~l~~s~G~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~crv-------------------------- 70 (694)
T KOG4443|consen 17 VCLMCPLCGSSGKGRAGRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCRV-------------------------- 70 (694)
T ss_pred hhhhhhhhccccccccCcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCcee--------------------------
Confidence 45678888854 5599999999999999996 2 211 134499999973
Q ss_pred hchhhhhhceeccccccCCcccccccCCCCCCCCCCCceecCCCCCCccCcccCCcccCCccccCCCCCeEec
Q 002000 675 EQITKRCIRIVKNLEAELSGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCC 747 (983)
Q Consensus 675 eqi~kRC~r~vk~~e~e~~~C~IC~~~dfs~sgf~~~tLL~CDqCerayHv~CL~~~~m~~LkelP~g~WfC~ 747 (983)
|..|+..+ ++..+++|+.|+-.||.+|..| .++.+|.+.|+|+
T Consensus 71 --------------------Ce~c~~~g------D~~kf~~Ck~cDvsyh~yc~~P----~~~~v~sg~~~ck 113 (694)
T KOG4443|consen 71 --------------------CEACGTTG------DPKKFLLCKRCDVSYHCYCQKP----PNDKVPSGPWLCK 113 (694)
T ss_pred --------------------eeeccccC------CcccccccccccccccccccCC----ccccccCcccccH
Confidence 66677443 6778999999999999999988 6788999999994
No 47
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=98.12 E-value=9.5e-06 Score=88.20 Aligned_cols=85 Identities=16% Similarity=0.216 Sum_probs=67.8
Q ss_pred cEEEEEEEeCCeEEEEEEEEEeC--CeeEEEeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEecch---hhhHHHH
Q 002000 850 GMYCAILTVNSSVVSAGILRVFG--QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAA---EEAESIW 924 (983)
Q Consensus 850 Gfy~~VL~~~~~vVsaA~lri~g--~~~AEip~VAT~~~~RgqG~gr~Lv~~IE~~l~~lgV~~LvLpA~---~~A~~~w 924 (983)
++|.++-..+|++||.+.+.+.. .+.++|-.++|+++|||||+|+.||..+++.++..|+..+.+... ..|..||
T Consensus 199 ~~~~a~~~~~~~~vG~~~~~~~~~~~~~~~i~~~~V~p~~rg~GiG~~ll~~~~~~~~~~g~~~v~l~v~~~N~~a~~~y 278 (292)
T TIGR03448 199 GLFLAFDDAPGELLGFHWTKVHPDEPALGEVYVVGVDPAAQGRGLGDALTLIGLHHLAARGLPAVMLYVEADNEAAVRTY 278 (292)
T ss_pred ceEEEEECCCCcEEEEEEEEecCCCCceeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEeCCCHHHHHHH
Confidence 45443322268999987666644 246888889999999999999999999999999999999887654 4689999
Q ss_pred HhccCcEEcCH
Q 002000 925 TDKFGFKKIDP 935 (983)
Q Consensus 925 ~~kfGF~~v~~ 935 (983)
.+ +||+....
T Consensus 279 ~k-~GF~~~~~ 288 (292)
T TIGR03448 279 EK-LGFTVAEV 288 (292)
T ss_pred HH-cCCEEccc
Confidence 98 99997653
No 48
>TIGR02406 ectoine_EctA L-2,4-diaminobutyric acid acetyltransferase. This enzyme family is the EctA of ectoine biosynthesis. Ectoine is a compatible solute, analagous to trehalose, betaines, etc., found often in halotolerant organisms. EctA is L-2,4-diaminobutyric acid acetyltransferase, also called DABA acetyltransferase.
Probab=98.07 E-value=1.4e-05 Score=80.32 Aligned_cols=83 Identities=12% Similarity=0.089 Sum_probs=66.2
Q ss_pred EEEEEE-eCCeEEEEEEEEE--eCCeeEEEeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEecc---hhhhHHHHH
Q 002000 852 YCAILT-VNSSVVSAGILRV--FGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPA---AEEAESIWT 925 (983)
Q Consensus 852 y~~VL~-~~~~vVsaA~lri--~g~~~AEip~VAT~~~~RgqG~gr~Lv~~IE~~l~~lgV~~LvLpA---~~~A~~~w~ 925 (983)
+++|++ .+|++||.+.+.. ...+.+.+-.+||+++|||||+|+.|+..+++.+...++.++.+.. -..|..+|.
T Consensus 40 ~~~v~~~~~~~ivG~~~~~~~~~~~~~~~i~~l~V~p~~rg~GiG~~L~~~l~~~a~~~~~~~i~~~v~~~N~~a~~ly~ 119 (157)
T TIGR02406 40 TSIVAESEGGEIVGFVSGYLRPDRPDVLFVWQVAVDPRARGKGLARRLLEALLERVACERVRHLETTITPDNQASRALFK 119 (157)
T ss_pred cEEEEEcCCCeEEEEEEEEecCCCCCeEEEEEEEEChHhccCcHHHHHHHHHHHHHHhCCCCEEEEEEcCCCHHHHHHHH
Confidence 445556 4679999876543 2345788999999999999999999999999999999988887654 456788998
Q ss_pred hccCcEEcCH
Q 002000 926 DKFGFKKIDP 935 (983)
Q Consensus 926 ~kfGF~~v~~ 935 (983)
+ +||+...+
T Consensus 120 k-~G~~~~~~ 128 (157)
T TIGR02406 120 A-LARRRGVH 128 (157)
T ss_pred H-hCcccCCC
Confidence 8 99986443
No 49
>COG0456 RimI Acetyltransferases [General function prediction only]
Probab=98.06 E-value=1.8e-05 Score=78.77 Aligned_cols=76 Identities=22% Similarity=0.251 Sum_probs=63.3
Q ss_pred eEEEEEEEE-EeCC----eeEEEeeeEeecCcccCChhHHHHHHHHHHhhhcCc-cEEEecchh---hhHHHHHhccCcE
Q 002000 861 SVVSAGILR-VFGQ----EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRV-KSIVLPAAE---EAESIWTDKFGFK 931 (983)
Q Consensus 861 ~vVsaA~lr-i~g~----~~AEip~VAT~~~~RgqG~gr~Lv~~IE~~l~~lgV-~~LvLpA~~---~A~~~w~~kfGF~ 931 (983)
+++|..... +.+. ..++|-.|||+|+|||+|+|++|+..+++.+...+. ..++|-... .|+.+|.+ +||.
T Consensus 72 ~~~G~~~~~~~~~~~~~~~~~~i~~iaV~p~~r~~Gig~~Ll~~~~~~~~~~~~~~~~~L~V~~~N~~Ai~lY~~-~GF~ 150 (177)
T COG0456 72 KVVGFLLVRVVDGRPSADHEGHIYNLAVDPEYRGRGIGRALLDEALERLRERGLADKIVLEVRESNEAAIGLYRK-LGFE 150 (177)
T ss_pred ceeEEEEEEEecCCccccCccEEEEEEEChHhhcCCHHHHHHHHHHHHHHhcCCCceEEEEEecCChHHHHHHHH-cCCE
Confidence 477877775 3343 279999999999999999999999999999999986 777777663 48999999 9999
Q ss_pred EcCHHH
Q 002000 932 KIDPEL 937 (983)
Q Consensus 932 ~v~~~~ 937 (983)
.+....
T Consensus 151 ~~~~~~ 156 (177)
T COG0456 151 VVKIRK 156 (177)
T ss_pred EEeeeh
Confidence 987644
No 50
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=98.04 E-value=3.3e-05 Score=75.58 Aligned_cols=76 Identities=22% Similarity=0.284 Sum_probs=63.3
Q ss_pred eCCeEEEEEEEEEeC--CeeEEEeeeEeecCcccCChhHHHHHHHHHHh-hhcCccEEEecc---hhhhHHHHHhccCcE
Q 002000 858 VNSSVVSAGILRVFG--QEVAELPLVATSKINHGKGYFQLLFACIEKLL-SFLRVKSIVLPA---AEEAESIWTDKFGFK 931 (983)
Q Consensus 858 ~~~~vVsaA~lri~g--~~~AEip~VAT~~~~RgqG~gr~Lv~~IE~~l-~~lgV~~LvLpA---~~~A~~~w~~kfGF~ 931 (983)
.+|++||.+.++... ...+++- +-+.++||++|+|+.|+..+++.| ..+|+++|.+-. -..|+.+|.+ +||+
T Consensus 58 ~~g~iiG~~~~~~~~~~~~~~~~~-~~v~~~~~~~gig~~l~~~l~~~af~~~~~~~i~~~v~~~N~~~i~~~~~-~GF~ 135 (155)
T PF13420_consen 58 EDGKIIGYVSLRDIDPYNHTAELS-IYVSPDYRGKGIGRKLLDELIEYAFKELGIHKIYLEVFSSNEKAINFYKK-LGFE 135 (155)
T ss_dssp CTTEEEEEEEEEESSSGTTEEEEE-EEEEGGGTTSSHHHHHHHHHHHHH-HHTT-CEEEEEEETT-HHHHHHHHH-TTEE
T ss_pred cCCcEEEEEEEEeeeccCCEEEEe-eEEChhHCCCcHHHHHHHHHHHHhhhccCeEEEEEEEecCCHHHHHHHHh-CCCE
Confidence 599999999998655 3578887 555599999999999999999999 999999987643 3568999999 9999
Q ss_pred EcCH
Q 002000 932 KIDP 935 (983)
Q Consensus 932 ~v~~ 935 (983)
..+.
T Consensus 136 ~~g~ 139 (155)
T PF13420_consen 136 EEGE 139 (155)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8764
No 51
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=98.03 E-value=1.7e-05 Score=95.11 Aligned_cols=85 Identities=12% Similarity=0.133 Sum_probs=68.1
Q ss_pred cEEEEEEEe--CCeEEEEEEEEEe------CCeeEEEeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEecc---hh
Q 002000 850 GMYCAILTV--NSSVVSAGILRVF------GQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPA---AE 918 (983)
Q Consensus 850 Gfy~~VL~~--~~~vVsaA~lri~------g~~~AEip~VAT~~~~RgqG~gr~Lv~~IE~~l~~lgV~~LvLpA---~~ 918 (983)
+.+.+|++. +|++||.+....+ +...++|-.|+|+++|||||+|++||..+++.++..|+.+++|.. -.
T Consensus 122 ~~~~~vA~~~~~g~IVG~~~~~~~~~~~~d~~~~~~i~~l~V~P~~Rg~GIG~~Ll~~l~e~a~~~G~~~i~L~V~~~N~ 201 (547)
T TIGR03103 122 AITYLVAEDEASGAIIGTVMGVDHRKAFNDPEHGSSLWCLAVDPQAAHPGVGEALVRALAEHFQSRGCAYMDLSVMHDNE 201 (547)
T ss_pred CceEEEEEECCCCeEEEEEEEEeccccccCCCCCeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEcCCCH
Confidence 444555554 6899999875322 123578889999999999999999999999999999999987654 36
Q ss_pred hhHHHHHhccCcEEcCH
Q 002000 919 EAESIWTDKFGFKKIDP 935 (983)
Q Consensus 919 ~A~~~w~~kfGF~~v~~ 935 (983)
.|..||.+ +||+.++.
T Consensus 202 ~Ai~fY~k-lGf~~~~~ 217 (547)
T TIGR03103 202 QAIALYEK-LGFRRIPV 217 (547)
T ss_pred HHHHHHHH-CCCEEeeE
Confidence 78999988 99987653
No 52
>PHA01807 hypothetical protein
Probab=98.00 E-value=1.6e-05 Score=80.57 Aligned_cols=75 Identities=7% Similarity=-0.022 Sum_probs=60.4
Q ss_pred EEEEEEeCCeEEEEEEEEEeCC----eeEEEeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEecchhh---hHHHH
Q 002000 852 YCAILTVNSSVVSAGILRVFGQ----EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEE---AESIW 924 (983)
Q Consensus 852 y~~VL~~~~~vVsaA~lri~g~----~~AEip~VAT~~~~RgqG~gr~Lv~~IE~~l~~lgV~~LvLpA~~~---A~~~w 924 (983)
+.++++.+|++||.+.+..... .+.+|..|.|.++|||+|+|+.||+.+++.++..|+..|.+-...+ |..+|
T Consensus 54 ~~lva~~dg~lvG~~~l~~~~~~~~~~i~~l~~lYV~pe~RG~GiG~~Ll~~~~~~Ar~~G~~~l~l~v~~~n~~a~~~y 133 (153)
T PHA01807 54 TELLVFRDGKLAGIAVLVFEDDPHVGPCLGVQWQYVLPEYRNAGVAREFLRELIRLAGEGNLPLIAFSHREGEGRYTIHY 133 (153)
T ss_pred eEEEEEECCEEEEEEEEEcCCCcceeeeccceeEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEecCCcHHHHHHH
Confidence 3355678999999999855432 2344555799999999999999999999999999999998876544 67788
Q ss_pred Hh
Q 002000 925 TD 926 (983)
Q Consensus 925 ~~ 926 (983)
.+
T Consensus 134 ~~ 135 (153)
T PHA01807 134 RR 135 (153)
T ss_pred Hh
Confidence 87
No 53
>cd04301 NAT_SF N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate. NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransfera
Probab=98.00 E-value=2.7e-05 Score=62.27 Aligned_cols=61 Identities=20% Similarity=0.117 Sum_probs=54.9
Q ss_pred EEEEeCCeEEEEEEEEEeC--CeeEEEeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEe
Q 002000 854 AILTVNSSVVSAGILRVFG--QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVL 914 (983)
Q Consensus 854 ~VL~~~~~vVsaA~lri~g--~~~AEip~VAT~~~~RgqG~gr~Lv~~IE~~l~~lgV~~LvL 914 (983)
++++.++++||.+.+.... ...+++-.++|+++|||+|+|+.|+..+.+.+...|.+++++
T Consensus 2 ~~~~~~~~~ig~~~~~~~~~~~~~~~l~~~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~ 64 (65)
T cd04301 2 LVAEDDGEIVGFASLSPDGSGGDTAYIGDLAVLPEYRGKGIGSALLEAAEEEARERGAKRLRL 64 (65)
T ss_pred EEEecCCEEEEEEEEEecCCCCccEEEEEEEECHHHcCcCHHHHHHHHHHHHHHHcCCcEEEe
Confidence 3456789999999998866 478999999999999999999999999999999999999876
No 54
>PRK01346 hypothetical protein; Provisional
Probab=97.96 E-value=2.8e-05 Score=89.21 Aligned_cols=80 Identities=16% Similarity=0.127 Sum_probs=67.6
Q ss_pred EEEEEeCCeEEEEEEEEEe------CC--eeEEEeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEecchhhhHHHH
Q 002000 853 CAILTVNSSVVSAGILRVF------GQ--EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIW 924 (983)
Q Consensus 853 ~~VL~~~~~vVsaA~lri~------g~--~~AEip~VAT~~~~RgqG~gr~Lv~~IE~~l~~lgV~~LvLpA~~~A~~~w 924 (983)
+++++.+|++||.+.+..+ |. ..+.|-.|||+|+|||+|+|++||..+++.++..|+..++|.+.. ..||
T Consensus 49 ~~va~~~~~lvg~~~~~~~~~~~~~~~~~~~~~i~~v~V~P~~RgrGig~~Ll~~~l~~a~~~g~~~~~L~~~~--~~~Y 126 (411)
T PRK01346 49 TLGAFDGDEVVGTAGAFDLRLTVPGGAVLPAAGVTAVTVAPTHRRRGLLTALMREQLRRIRERGEPVAALTASE--GGIY 126 (411)
T ss_pred eEEEEECCEEEEEEEEeccccccCCCCccceeEEEEEEEChhhcCCCHHHHHHHHHHHHHHHCCCcEEEEECCc--hhhH
Confidence 3566789999999987643 32 478999999999999999999999999999999999988887664 4689
Q ss_pred HhccCcEEcCH
Q 002000 925 TDKFGFKKIDP 935 (983)
Q Consensus 925 ~~kfGF~~v~~ 935 (983)
.+ |||.....
T Consensus 127 ~r-~Gf~~~~~ 136 (411)
T PRK01346 127 GR-FGYGPATY 136 (411)
T ss_pred hh-CCCeeccc
Confidence 88 99987765
No 55
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=97.89 E-value=5.5e-05 Score=69.34 Aligned_cols=75 Identities=16% Similarity=0.220 Sum_probs=55.6
Q ss_pred CCeEEEEEEEEEeCCeeEEEeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEE-ec-chhhhHHHHHhccCcEEcCH
Q 002000 859 NSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIV-LP-AAEEAESIWTDKFGFKKIDP 935 (983)
Q Consensus 859 ~~~vVsaA~lri~g~~~AEip~VAT~~~~RgqG~gr~Lv~~IE~~l~~lgV~~Lv-Lp-A~~~A~~~w~~kfGF~~v~~ 935 (983)
+++.+..+.-.+...+ ++|..|.|.|+|||+|+|+.|+.++.+.+..-|..-+. +. .-..|..+|++ +||+.+.+
T Consensus 6 ~~~~~~l~~~~~~~~~-g~i~~v~t~p~~RrrGlg~~lv~~l~~~~~~~g~~~~l~v~~~N~~s~~ly~k-lGf~~~~~ 82 (86)
T PF08445_consen 6 DGELVALVAWIIRSDD-GEIGGVYTLPEHRRRGLGSALVAALARELLERGKTPFLYVDADNEASIRLYEK-LGFREIEE 82 (86)
T ss_dssp CTCCEEEEEEEEESCT-CCEEEEEE-GGGTTSSHHHHHHHHHHHHHHHTTSEEEEEEETT-HHHHHHHHH-CT-EEEEE
T ss_pred ECCccceeeEeeeCCC-cEEEEEEECHHHcCCCHHHHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHH-cCCEEEEE
Confidence 3355555555555554 99999999999999999999999999998888876533 22 33457899998 99998753
No 56
>PRK10562 putative acetyltransferase; Provisional
Probab=97.86 E-value=5.1e-05 Score=74.24 Aligned_cols=76 Identities=11% Similarity=0.103 Sum_probs=59.0
Q ss_pred EEEEeCCeEEEEEEEEEeCCeeEEEeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEecchhhhHHHHHhccCcEEc
Q 002000 854 AILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKI 933 (983)
Q Consensus 854 ~VL~~~~~vVsaA~lri~g~~~AEip~VAT~~~~RgqG~gr~Lv~~IE~~l~~lgV~~LvLpA~~~A~~~w~~kfGF~~v 933 (983)
+++..+|++||.+.+... ..+..++|.++|||+|||+.||..+++.+..+.+ .+...-..+..||.+ +||+.+
T Consensus 51 ~v~~~~~~~iG~~~~~~~----~~i~~~~v~~~~rg~G~g~~ll~~~~~~~~~~~~--~v~~~N~~s~~~y~k-~Gf~~~ 123 (145)
T PRK10562 51 WVWEEDGKLLGFVSVLEG----RFVGALFVAPKAVRRGIGKALMQHVQQRYPHLSL--EVYQKNQRAVNFYHA-QGFRIV 123 (145)
T ss_pred EEEEECCEEEEEEEEeec----cEEEEEEECHHHcCCCHHHHHHHHHHhhCCeEEE--EEEcCChHHHHHHHH-CCCEEc
Confidence 455678899999887432 4677899999999999999999999997654332 233445578999999 999998
Q ss_pred CHH
Q 002000 934 DPE 936 (983)
Q Consensus 934 ~~~ 936 (983)
+..
T Consensus 124 ~~~ 126 (145)
T PRK10562 124 DSA 126 (145)
T ss_pred ccc
Confidence 863
No 57
>PRK10514 putative acetyltransferase; Provisional
Probab=97.86 E-value=5.7e-05 Score=73.23 Aligned_cols=73 Identities=16% Similarity=0.114 Sum_probs=57.8
Q ss_pred EeCCeEEEEEEEEEeCCeeEEEeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEecchhhhHHHHHhccCcEEcCHH
Q 002000 857 TVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKIDPE 936 (983)
Q Consensus 857 ~~~~~vVsaA~lri~g~~~AEip~VAT~~~~RgqG~gr~Lv~~IE~~l~~lgV~~LvLpA~~~A~~~w~~kfGF~~v~~~ 936 (983)
..++++||.+.+.- .++..+++.++|||||+|++||+.+++.+.. +...+...-..+..+|++ +||+..+..
T Consensus 56 ~~~~~~iG~~~~~~-----~~~~~~~v~p~~rgkGig~~Ll~~~~~~~~~--i~~~v~~~N~~a~~~yek-~Gf~~~~~~ 127 (145)
T PRK10514 56 DERDQPVGFMLLSG-----GHMEALFVDPDVRGCGVGRMLVEHALSLHPE--LTTDVNEQNEQAVGFYKK-MGFKVTGRS 127 (145)
T ss_pred ecCCcEEEEEEEec-----CcEeEEEECHHhccCCHHHHHHHHHHHhccc--cEEEeecCCHHHHHHHHH-CCCEEeccc
Confidence 46789999887642 3456799999999999999999999997643 344445555779999998 999998764
Q ss_pred H
Q 002000 937 L 937 (983)
Q Consensus 937 ~ 937 (983)
.
T Consensus 128 ~ 128 (145)
T PRK10514 128 E 128 (145)
T ss_pred c
Confidence 4
No 58
>PRK15130 spermidine N1-acetyltransferase; Provisional
Probab=97.85 E-value=8e-05 Score=75.72 Aligned_cols=81 Identities=17% Similarity=0.137 Sum_probs=66.7
Q ss_pred EEEEEeCCeEEEEEEEEEeC--CeeEEEeeeEeecCcccCChhHHHHHHHHHHhh-hcCccEEEecch---hhhHHHHHh
Q 002000 853 CAILTVNSSVVSAGILRVFG--QEVAELPLVATSKINHGKGYFQLLFACIEKLLS-FLRVKSIVLPAA---EEAESIWTD 926 (983)
Q Consensus 853 ~~VL~~~~~vVsaA~lri~g--~~~AEip~VAT~~~~RgqG~gr~Lv~~IE~~l~-~lgV~~LvLpA~---~~A~~~w~~ 926 (983)
.++++.+|++||.+.+.... ...+++. +++.++|||+|+|+.|+..+.+.+. .+|+++|++... ..|..+|.+
T Consensus 59 ~~~i~~~g~~iG~~~~~~~~~~~~~~~~~-~~v~~~~~g~G~g~~l~~~l~~~~~~~~~~~rv~~~v~~~N~~s~~~yek 137 (186)
T PRK15130 59 RFVVECDGEKAGLVELVEINHVHRRAEFQ-IIISPEYQGKGLATRAAKLAMDYGFTVLNLYKLYLIVDKENEKAIHIYRK 137 (186)
T ss_pred EEEEEECCEEEEEEEEEeecCCCCeEEEE-EEECHHHcCCCHHHHHHHHHHHHHhhcCCceEEEEEEccCCHHHHHHHHH
Confidence 44557799999999886653 3467775 8999999999999999999999875 699999988643 468999999
Q ss_pred ccCcEEcCH
Q 002000 927 KFGFKKIDP 935 (983)
Q Consensus 927 kfGF~~v~~ 935 (983)
+||+.++.
T Consensus 138 -~GF~~~~~ 145 (186)
T PRK15130 138 -LGFEVEGE 145 (186)
T ss_pred -CCCEEEEE
Confidence 99998765
No 59
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=97.83 E-value=6.4e-05 Score=84.14 Aligned_cols=82 Identities=11% Similarity=0.036 Sum_probs=69.0
Q ss_pred cEEEEEEEe---CCeEEEEEEEEEeCCeeEEEeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEecch-----hhhH
Q 002000 850 GMYCAILTV---NSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAA-----EEAE 921 (983)
Q Consensus 850 Gfy~~VL~~---~~~vVsaA~lri~g~~~AEip~VAT~~~~RgqG~gr~Lv~~IE~~l~~lgV~~LvLpA~-----~~A~ 921 (983)
..|++.+.. ++.+||.+.++.. .+.++|-.+++++.|||+|+|++||..+++.++..|+.+|++... ..|.
T Consensus 230 ~~~~~~~~d~~gd~givG~~~~~~~-~~~~~I~~l~vs~r~~grGig~~Ll~~l~~~a~~~G~~~i~l~v~~~~~N~~A~ 308 (320)
T TIGR01686 230 EIVTVSMSDRFGDSGIIGIFVFEKK-EGNLFIDDLCMSCRALGRGVETRMLRWLFEQALDLGNHNARLYYRRTERNMPFL 308 (320)
T ss_pred CEEEEEEEecCCCCceEEEEEEEec-CCcEEEEEEEEcHhHhcCcHHHHHHHHHHHHHHHcCCCeEEEEEeeCCCchHHH
Confidence 355555543 5789999988764 467899999999999999999999999999999999999988543 4689
Q ss_pred HHHHhccCcEEc
Q 002000 922 SIWTDKFGFKKI 933 (983)
Q Consensus 922 ~~w~~kfGF~~v 933 (983)
.||.+ +||...
T Consensus 309 ~fY~~-~GF~~~ 319 (320)
T TIGR01686 309 SFYEQ-IGFEDE 319 (320)
T ss_pred HHHHH-cCCccC
Confidence 99998 999854
No 60
>PF13523 Acetyltransf_8: Acetyltransferase (GNAT) domain; PDB: 2VQY_A 2BUE_A 1V0C_A 1YK3_D 2PR8_A 2QIR_A 2PRB_A 2QML_A 2PC1_A.
Probab=97.83 E-value=0.00011 Score=72.21 Aligned_cols=86 Identities=15% Similarity=0.130 Sum_probs=68.2
Q ss_pred ecEEEEEEEeCCeEEEEEEEEE------eCCeeEEEeeeEeecCcccCChhHHHHHHHHHHhhhc-CccEEEecchh---
Q 002000 849 GGMYCAILTVNSSVVSAGILRV------FGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFL-RVKSIVLPAAE--- 918 (983)
Q Consensus 849 ~Gfy~~VL~~~~~vVsaA~lri------~g~~~AEip~VAT~~~~RgqG~gr~Lv~~IE~~l~~l-gV~~LvLpA~~--- 918 (983)
.+++.+|++.+|++||.+.+.- .....+.+-.+++.++|||||+|+.++.++++.+..- +++++++....
T Consensus 46 ~~~~~~v~~~dg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~G~g~~~~~~~~~~~~~~~~~~~i~~~~~~~N~ 125 (152)
T PF13523_consen 46 PGHHPYVAEDDGEPIGYFEIYWPDEDYDADDGDRGIHRLIVDPEYRGQGLGKAMLRALIEFLFEDPGVDRIVLDPHEDNT 125 (152)
T ss_dssp TTEEEEEEEETTEEEEEEEEEEGGGSS---TTEEEEEEEESTGGGTTSSHHHHHHHHHHHHHHTSTT--EEEEEEBTT-H
T ss_pred CCceEEEEEECCEEEEEEEEecccccccCCCCEEEEeeeeechhhcCCCHHHHHHHHHHHHHHhCCCCCEEEEecCcCCH
Confidence 4667888899999999887743 1345677999999999999999999999999887765 89999998765
Q ss_pred hhHHHHHhccCcEEcCH
Q 002000 919 EAESIWTDKFGFKKIDP 935 (983)
Q Consensus 919 ~A~~~w~~kfGF~~v~~ 935 (983)
-|+..|++ +||+.++.
T Consensus 126 ~~~~~~~k-~GF~~~g~ 141 (152)
T PF13523_consen 126 RAIRLYEK-AGFRKVGE 141 (152)
T ss_dssp HHHHHHHH-TT-EEEEE
T ss_pred HHHHHHHH-cCCEEeeE
Confidence 47888887 99998764
No 61
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=97.80 E-value=4.2e-06 Score=68.96 Aligned_cols=48 Identities=31% Similarity=0.958 Sum_probs=36.4
Q ss_pred ccccccCCCCCCCCCCCceecCCCCCCccCcccCCcccCCccccCCCCCeEecCCch
Q 002000 695 CLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCS 751 (983)
Q Consensus 695 C~IC~~~dfs~sgf~~~tLL~CDqCerayHv~CL~~~~m~~LkelP~g~WfC~~~C~ 751 (983)
|.+|++.+ +++.||.|+.|.++||..|+.++.. ....+.+.|+| ..|.
T Consensus 2 C~vC~~~~------~~~~~i~C~~C~~~~H~~C~~~~~~--~~~~~~~~w~C-~~C~ 49 (51)
T PF00628_consen 2 CPVCGQSD------DDGDMIQCDSCNRWYHQECVGPPEK--AEEIPSGDWYC-PNCR 49 (51)
T ss_dssp BTTTTSSC------TTSSEEEBSTTSCEEETTTSTSSHS--HHSHHSSSBSS-HHHH
T ss_pred CcCCCCcC------CCCCeEEcCCCChhhCcccCCCChh--hccCCCCcEEC-cCCc
Confidence 88898743 5678999999999999999987532 12334459999 5674
No 62
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.79 E-value=9e-06 Score=98.57 Aligned_cols=49 Identities=43% Similarity=1.026 Sum_probs=43.2
Q ss_pred ccccccccccccCCCeeccCCCCCccCcccCC--CCCCCCCCccccccccc
Q 002000 601 KDNDDLCTICADGGNLLPCDGCPRAFHKECAS--LSSIPQGDWYCKYCQNM 649 (983)
Q Consensus 601 ~~ndd~C~VC~dgG~Ll~CD~CprafH~~Cl~--l~~vP~g~W~C~~C~~~ 649 (983)
..+...|.+|+++|++++||.|+.+||..|++ +...|.++|.|+.|...
T Consensus 44 ~~~~e~c~ic~~~g~~l~c~tC~~s~h~~cl~~pl~~~p~~~~~c~Rc~~p 94 (696)
T KOG0383|consen 44 DAEQEACRICADGGELLWCDTCPASFHASCLGPPLTPQPNGEFICPRCFCP 94 (696)
T ss_pred hhhhhhhhhhcCCCcEEEeccccHHHHHHccCCCCCcCCccceeeeeeccC
Confidence 45667899999999999999999999999995 67888888999999543
No 63
>TIGR03585 PseH pseudaminic acid biosynthesis N-acetyl transferase. Sequences in this family are members of the pfam00583 (GNAT) superfamily of acetyltransferases and are proposed to perform a N-acetylation step in the process of pseudaminic acid biosynthesis in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. Significantly, many genomes containing other components of this pathway lack this gene, indicating that some other N-acetyl transferases may be incolved and/or the step is optional, resulting in a non-acetylated pseudaminic acid variant sugar.
Probab=97.73 E-value=0.0002 Score=69.99 Aligned_cols=80 Identities=14% Similarity=0.125 Sum_probs=65.8
Q ss_pred EEEeCCeEEEEEEEEEeC--CeeEEEeeeEeecCcccCChhHHHHHHHHHHhh-hcCccEEEec---chhhhHHHHHhcc
Q 002000 855 ILTVNSSVVSAGILRVFG--QEVAELPLVATSKINHGKGYFQLLFACIEKLLS-FLRVKSIVLP---AAEEAESIWTDKF 928 (983)
Q Consensus 855 VL~~~~~vVsaA~lri~g--~~~AEip~VAT~~~~RgqG~gr~Lv~~IE~~l~-~lgV~~LvLp---A~~~A~~~w~~kf 928 (983)
+++.+|++||.+.+.... ...+++... +.+.+| +|||+.++.++++.+. .+|+.+|.+. .-..+..+|.+ +
T Consensus 55 ~~~~~g~~vG~~~~~~~~~~~~~~~~g~~-~~~~~~-~G~g~~~~~~~~~~a~~~~~~~~i~~~v~~~N~~s~~~y~k-~ 131 (156)
T TIGR03585 55 IVCQESRPIGVISFTDINLVHKSAFWGIY-ANPFCK-PGVGSVLEEAALEYAFEHLGLHKLSLEVLEFNNKALKLYEK-F 131 (156)
T ss_pred EEEECCEEEEEEEEEecChhhCeEEEEEE-eChhhh-cCchHHHHHHHHHHHHhhCCeeEEEEEEeccCHHHHHHHHH-c
Confidence 446789999999997665 457788765 889999 9999999999999987 5899999875 44568899999 9
Q ss_pred CcEEcCHHH
Q 002000 929 GFKKIDPEL 937 (983)
Q Consensus 929 GF~~v~~~~ 937 (983)
||+.++...
T Consensus 132 Gf~~~g~~~ 140 (156)
T TIGR03585 132 GFEREGVFR 140 (156)
T ss_pred CCeEeeeeh
Confidence 999887543
No 64
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF13718 GNAT_acetyltr_2: GNAT acetyltransferase 2; PDB: 2ZPA_B.
Probab=97.69 E-value=0.00023 Score=75.05 Aligned_cols=88 Identities=16% Similarity=0.126 Sum_probs=63.8
Q ss_pred eEecEEEEEEEeCC--eEEEEEEEEEeC-------------------------------------CeeEEEeeeEeecCc
Q 002000 847 EFGGMYCAILTVNS--SVVSAGILRVFG-------------------------------------QEVAELPLVATSKIN 887 (983)
Q Consensus 847 df~Gfy~~VL~~~~--~vVsaA~lri~g-------------------------------------~~~AEip~VAT~~~~ 887 (983)
|=-+...++|..++ +|++|+-+-..| -.-+.|-+|||+|++
T Consensus 23 DaP~h~l~~l~~~~~p~il~~~~v~~EG~l~~~l~~~i~~g~rRp~G~LiP~~L~~~~~~~~f~~l~g~RIvRIAvhP~~ 102 (196)
T PF13718_consen 23 DAPNHRLFVLLQPGDPDILGVAQVALEGGLSKELIEAILSGGRRPKGHLIPQTLAQHFGDPEFAQLSGARIVRIAVHPDL 102 (196)
T ss_dssp H-TTEEEEEEE-SS--SEEEEEEEEEEE---HHHHHHHHTTS---SS-HHHHHHHHHSS-TTGGGSEEEEEEEEEE-CCC
T ss_pred cCCcceeehhccCCCceEEEEEEEEecCCCCHHHHHHHHhCCCCCCCCCHHHHHHHHhCCHHHHhhcceeEEEEEEChhh
Confidence 33456677888888 999999987777 236889999999999
Q ss_pred ccCChhHHHHHHHHHHh-------------------------hhcCccEEEe--cchhhhHHHHHhccCcEEcCH
Q 002000 888 HGKGYFQLLFACIEKLL-------------------------SFLRVKSIVL--PAAEEAESIWTDKFGFKKIDP 935 (983)
Q Consensus 888 RgqG~gr~Lv~~IE~~l-------------------------~~lgV~~LvL--pA~~~A~~~w~~kfGF~~v~~ 935 (983)
|++|||++|++.+++.+ +.-+|..|=. .+.++...||.+ .||.++--
T Consensus 103 q~~G~Gs~lL~~l~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~vDylGtSFG~t~~Ll~FW~k-~gf~pv~l 176 (196)
T PF13718_consen 103 QRMGYGSRLLQQLEQYAEGKIPSLSEQDKEKLPPLLSKLSDRRPPGVDYLGTSFGATPELLKFWQK-NGFVPVYL 176 (196)
T ss_dssp -SSSHHHHHHHHHHHT-----------------------------S-SEEEEEEE--HHHHHHHHC-TT-EEEEE
T ss_pred hcCCHHHHHHHHHHHHHhhhcccccccccccccccccccccccccCCCEEEeccCCCHHHHHHHHH-CCcEEEEE
Confidence 99999999999999999 4667776644 367889999999 99998743
No 66
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=97.69 E-value=8.9e-06 Score=100.24 Aligned_cols=130 Identities=25% Similarity=0.420 Sum_probs=84.4
Q ss_pred ccccccccccccCCCeeccCCCCCccCcccCC--CCCCCCCCcccccccccccccccccccccccccccccccCchh-ch
Q 002000 601 KDNDDLCTICADGGNLLPCDGCPRAFHKECAS--LSSIPQGDWYCKYCQNMFERKRFLQHDANAVEAGRVSGVDSVE-QI 677 (983)
Q Consensus 601 ~~ndd~C~VC~dgG~Ll~CD~CprafH~~Cl~--l~~vP~g~W~C~~C~~~~~~ek~v~~n~na~a~g~~~Gvd~~e-qi 677 (983)
.+-+|.|.+|.+.|+++||..||+.||..|.. .-.+|...|.|-.|... ..++ .+.++.+.+ ++
T Consensus 341 ~~~ddhcrf~~d~~~~lc~Et~prvvhlEcv~hP~~~~~s~~~e~evc~~h---------kvng----vvd~vl~~~K~~ 407 (1414)
T KOG1473|consen 341 IEYDDHCRFCHDLGDLLCCETCPRVVHLECVFHPRFAVPSAFWECEVCNIH---------KVNG----VVDCVLPPSKNV 407 (1414)
T ss_pred eeecccccccCcccceeecccCCceEEeeecCCccccCCCccchhhhhhhh---------ccCc----ccccccChhhcc
Confidence 34578999999999999999999999999994 66889999999999731 1111 111122211 11
Q ss_pred h-hhhhcee-----ccccccCCcccccccCCCCCCCCCCCceecCCC-CCCccCc-ccCCcccCCccccCCCCCeEecCC
Q 002000 678 T-KRCIRIV-----KNLEAELSGCLLCRGCDFSKSGFGPRTILLCDQ-CEREFHV-GCLKKHKMADLRELPKGKWFCCMD 749 (983)
Q Consensus 678 ~-kRC~r~v-----k~~e~e~~~C~IC~~~dfs~sgf~~~tLL~CDq-CerayHv-~CL~~~~m~~LkelP~g~WfC~~~ 749 (983)
. .|+..+. ..+-....-|.||+. +++++-|+. |++.||. .||..... -..++.+-|+| .+
T Consensus 408 ~~iR~~~iG~dr~gr~ywfi~rrl~Ie~~---------det~l~yysT~pqly~ll~cLd~~~~--e~~L~d~i~~~-~e 475 (1414)
T KOG1473|consen 408 DSIRHTPIGRDRYGRKYWFISRRLRIEGM---------DETLLWYYSTCPQLYHLLRCLDRTYV--EMYLCDGIWER-RE 475 (1414)
T ss_pred cceeccCCCcCccccchhceeeeeEEecC---------CCcEEEEecCcHHHHHHHHHhchHHH--HHhhccchhhh-HH
Confidence 1 1111110 001111122889984 358888996 9999998 99985321 23678899999 67
Q ss_pred chhhHH
Q 002000 750 CSRINS 755 (983)
Q Consensus 750 C~~I~~ 755 (983)
|-.-..
T Consensus 476 e~~rqM 481 (1414)
T KOG1473|consen 476 EIIRQM 481 (1414)
T ss_pred HHHHhc
Confidence 854333
No 67
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=97.69 E-value=0.0001 Score=87.87 Aligned_cols=77 Identities=16% Similarity=0.200 Sum_probs=64.4
Q ss_pred eCCeEEEEEEEEEeCCeeE-----------EEeeeEe--------ecCcccCChhHHHHHHHHHHhhhcCccEEEecchh
Q 002000 858 VNSSVVSAGILRVFGQEVA-----------ELPLVAT--------SKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAE 918 (983)
Q Consensus 858 ~~~~vVsaA~lri~g~~~A-----------Eip~VAT--------~~~~RgqG~gr~Lv~~IE~~l~~lgV~~LvLpA~~ 918 (983)
.++.+||-.+||....+.. |+-..++ .++|||+|+|+.||+++|+.|++.|++.|++.+..
T Consensus 421 ~~~~l~G~lrlr~~~~~~~~~~~~~~a~IrelhV~G~~~~~~~~~~~~~rg~GiG~~Ll~~ae~~Ar~~G~~~i~v~s~~ 500 (522)
T TIGR01211 421 KNDILIGFLRLRFPSEPAHRKEVDATALVRELHVYGSEVPIGERGDDEWQHRGYGRRLLEEAERIAAEEGSEKILVISGI 500 (522)
T ss_pred CCCeEEEEEEEecCcccccccccCCCceEEEEEEeeeeccccccCChhHhCcCHHHHHHHHHHHHHHHCCCCEEEEeeCc
Confidence 4578899988887654322 5554444 58899999999999999999999999999999999
Q ss_pred hhHHHHHhccCcEEcCH
Q 002000 919 EAESIWTDKFGFKKIDP 935 (983)
Q Consensus 919 ~A~~~w~~kfGF~~v~~ 935 (983)
.|..||.+ +||...++
T Consensus 501 ~A~~FY~k-lGf~~~g~ 516 (522)
T TIGR01211 501 GVREYYRK-LGYELDGP 516 (522)
T ss_pred hHHHHHHH-CCCEEEcc
Confidence 99999998 99998764
No 68
>COG3153 Predicted acetyltransferase [General function prediction only]
Probab=97.68 E-value=0.00013 Score=75.38 Aligned_cols=136 Identities=15% Similarity=0.155 Sum_probs=93.4
Q ss_pred HHHHHHHHhhhhcCCCcccCCCCCCcccchhccccCCCceEecEEEEEEEeCCeEEEEEEEEEe--C---CeeEEEeeeE
Q 002000 808 LLLSQAVAIFHDCFDPIVDSISGRDLIPSMVYGRNLRGQEFGGMYCAILTVNSSVVSAGILRVF--G---QEVAELPLVA 882 (983)
Q Consensus 808 skLa~AL~If~EcFdPivD~~Sg~DLIp~MVy~~~~~r~df~Gfy~~VL~~~~~vVsaA~lri~--g---~~~AEip~VA 882 (983)
.-.....+|.++.|.|-.. .+++..+ |...+.++.= .+|...+|++||...+--. | ....=|-.+|
T Consensus 12 ~d~~~i~~~~~~aF~~~~e----~~~v~~l---R~~~~~~~~L--slVA~d~g~vvG~Il~s~v~~~g~~~~~~~LaPLa 82 (171)
T COG3153 12 ADIPAIEALTREAFGPGRE----AKLVDKL---REGGRPDLTL--SLVAEDDGEVVGHILFSPVTVGGEELGWLGLAPLA 82 (171)
T ss_pred hhHHHHHHHHHHHhhcchH----HHHHHHH---HhcCCcccce--eEEEeeCCEEEEEEEEeEEEecCcccceEEEEeEE
Confidence 3345556677788863322 2333322 2222223222 3456788999998877532 2 1456678899
Q ss_pred eecCcccCChhHHHHHHHHHHhhhcCccEEEecchhhhHHHHHhccCcEEcCHHHHHHHHhcCCceEEeCCCeeeeeccc
Q 002000 883 TSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKIDPELLSIYRKRCSQLVTFKGTSMLQKRVP 962 (983)
Q Consensus 883 T~~~~RgqG~gr~Lv~~IE~~l~~lgV~~LvLpA~~~A~~~w~~kfGF~~v~~~~~~~~~~~~~~ll~F~gt~mLqK~l~ 962 (983)
|+++|||||+|++||...++.|+.+|...+++.-. ..+| .+|||.......+.- +.. +|.+.+|-+.|.
T Consensus 83 V~p~~qg~GIG~~Lvr~~le~a~~~G~~~v~vlGd---p~YY-~rfGF~~~~~~~l~~------p~~-~~~~~fl~~~L~ 151 (171)
T COG3153 83 VDPEYQGQGIGSALVREGLEALRLAGASAVVVLGD---PTYY-SRFGFEPAAGAKLYA------PGP-VPDERFLALELG 151 (171)
T ss_pred EchhhcCCcHHHHHHHHHHHHHHHCCCCEEEEecC---cccc-cccCcEEcccccccc------CCC-CCCceEEEEEcc
Confidence 99999999999999999999999999999998877 5567 559999988765411 222 677777777775
Q ss_pred C
Q 002000 963 A 963 (983)
Q Consensus 963 ~ 963 (983)
.
T Consensus 152 ~ 152 (171)
T COG3153 152 D 152 (171)
T ss_pred C
Confidence 5
No 69
>COG3393 Predicted acetyltransferase [General function prediction only]
Probab=97.68 E-value=0.00012 Score=79.63 Aligned_cols=84 Identities=20% Similarity=0.232 Sum_probs=68.6
Q ss_pred EEEEEEEeCCeEEEEEEEEEeCCeeEEEeeeEeecCcccCChhHHHHHHHHHHhhhcC-ccEEEecch-hhhHHHHHhcc
Q 002000 851 MYCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLR-VKSIVLPAA-EEAESIWTDKF 928 (983)
Q Consensus 851 fy~~VL~~~~~vVsaA~lri~g~~~AEip~VAT~~~~RgqG~gr~Lv~~IE~~l~~lg-V~~LvLpA~-~~A~~~w~~kf 928 (983)
+.++.+..+|+||+.|...-.+...|+|-.|.|.|+|||+||+.+|+.++-..+-.-| ..-|+..+. +-|-.+|.+ .
T Consensus 177 ~~~~f~~~d~~iVa~A~t~a~~~~~~~I~gV~T~peyR~kGyAt~lva~L~~~lL~eGk~~~L~~~~~N~~A~~iY~r-i 255 (268)
T COG3393 177 SRTYFLEGDGKIVAKAETAAENPAYAQINGVYTHPEYRGKGYATALVATLAAKLLAEGKIPCLFVNSDNPVARRIYQR-I 255 (268)
T ss_pred eeEEEEccCCcEEEeeeccccCCcceEEEEEEcCHHHccccHHHHHHHHHHHHHHhCCCeeEEEEecCCHHHHHHHHH-h
Confidence 4455556677999999999999999999999999999999999999999877665555 445555433 557889999 9
Q ss_pred CcEEcCH
Q 002000 929 GFKKIDP 935 (983)
Q Consensus 929 GF~~v~~ 935 (983)
||+.+++
T Consensus 256 GF~~~g~ 262 (268)
T COG3393 256 GFREIGE 262 (268)
T ss_pred CCeecce
Confidence 9998764
No 70
>PRK10809 ribosomal-protein-S5-alanine N-acetyltransferase; Provisional
Probab=97.60 E-value=0.00028 Score=72.35 Aligned_cols=83 Identities=8% Similarity=0.125 Sum_probs=66.2
Q ss_pred EEEEEEEeCCeEEEEEEEEEeCC---eeEEEeeeEeecCcccCChhHHHHHHHHHHhhh-cCccEEEecchh---hhHHH
Q 002000 851 MYCAILTVNSSVVSAGILRVFGQ---EVAELPLVATSKINHGKGYFQLLFACIEKLLSF-LRVKSIVLPAAE---EAESI 923 (983)
Q Consensus 851 fy~~VL~~~~~vVsaA~lri~g~---~~AEip~VAT~~~~RgqG~gr~Lv~~IE~~l~~-lgV~~LvLpA~~---~A~~~ 923 (983)
.|.+++..++++||.+.|+.... ..+||. +.+.++|||||||+.++.++.+.+.. +|+.+|++.+.. -+..+
T Consensus 77 ~~~i~~~~~~~~iG~i~l~~~~~~~~~~~eig-~~i~~~~~G~G~~~ea~~~ll~~~~~~l~l~~i~~~v~~~N~~S~~l 155 (194)
T PRK10809 77 YFALLDPDEKEIIGVANFSNVVRGSFHACYLG-YSLGQKWQGQGLMFEALQAAIRYMQRQQHMHRIMANYMPHNKRSGDL 155 (194)
T ss_pred EEEEEECCCCeEEEEEEEEeecCCCeeeEEEE-EEECHHHcCCCHHHHHHHHHHHHHHhcCCceEEEEEeeCCCHHHHHH
Confidence 45554445789999999876543 356666 46799999999999999999999876 899999988764 47888
Q ss_pred HHhccCcEEcCH
Q 002000 924 WTDKFGFKKIDP 935 (983)
Q Consensus 924 w~~kfGF~~v~~ 935 (983)
+.+ +||...+.
T Consensus 156 ~ek-~Gf~~~g~ 166 (194)
T PRK10809 156 LAR-LGFEKEGY 166 (194)
T ss_pred HHH-CCCcEEee
Confidence 888 99997665
No 71
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=97.56 E-value=2.3e-05 Score=64.55 Aligned_cols=43 Identities=42% Similarity=1.265 Sum_probs=35.5
Q ss_pred ccccccc---CCCeeccCCCCCccCcccCCCC----CCCCCCcccccccc
Q 002000 606 LCTICAD---GGNLLPCDGCPRAFHKECASLS----SIPQGDWYCKYCQN 648 (983)
Q Consensus 606 ~C~VC~d---gG~Ll~CD~CprafH~~Cl~l~----~vP~g~W~C~~C~~ 648 (983)
+|.+|+. .++++.|+.|.+.||..|+++. ..+.+.|+|+.|..
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 4788885 6789999999999999999865 33456999999973
No 72
>PF13302 Acetyltransf_3: Acetyltransferase (GNAT) domain; PDB: 3TTH_C 3JUW_A 2ZXV_A 2Z0Z_A 2VI7_B 3EG7_F 1YRE_C 3IGR_B 3FBU_A 2FCK_A ....
Probab=97.50 E-value=0.00074 Score=64.57 Aligned_cols=80 Identities=16% Similarity=0.210 Sum_probs=62.4
Q ss_pred cEEEEEEEe--CCeEEEEEEEEEe--CCeeEEEeeeEeecCcccCChhHHHHHHHHHHh-hhcCccEEEecchhh---hH
Q 002000 850 GMYCAILTV--NSSVVSAGILRVF--GQEVAELPLVATSKINHGKGYFQLLFACIEKLL-SFLRVKSIVLPAAEE---AE 921 (983)
Q Consensus 850 Gfy~~VL~~--~~~vVsaA~lri~--g~~~AEip~VAT~~~~RgqG~gr~Lv~~IE~~l-~~lgV~~LvLpA~~~---A~ 921 (983)
|++.+++.. ++++||...++.. ..+.+||. +.+.++|||+|+|+.++..+.+.+ ..+|+.+|.+....+ +.
T Consensus 55 ~~~~~~i~~~~~~~~iG~i~~~~~~~~~~~~eig-~~i~~~~~g~G~~~~~~~~~~~~~~~~~~~~~i~a~~~~~N~~s~ 133 (142)
T PF13302_consen 55 GYYYFAIEDKDDGEIIGFIGLYNIDKNNNWAEIG-YWIGPDYRGKGYGTEALKLLLDWAFEELGLHRIIATVMADNEASR 133 (142)
T ss_dssp TEEEEEEEETTTTEEEEEEEEEEEETTTTEEEEE-EEEEGGGTTSSHHHHHHHHHHHHHHHTSTSSEEEEEEETT-HHHH
T ss_pred cceEEEEEeccCCceEEEeeeeecccCCCccccc-cchhHHHHhhhHHHHHHHHHHHHHHhcCCcEEEEEEECcCCHHHH
Confidence 355555554 4579999999543 46899999 679999999999999999999999 799999998876654 45
Q ss_pred HHHHhccCcE
Q 002000 922 SIWTDKFGFK 931 (983)
Q Consensus 922 ~~w~~kfGF~ 931 (983)
.++.+ +||+
T Consensus 134 ~~~~k-~GF~ 142 (142)
T PF13302_consen 134 RLLEK-LGFE 142 (142)
T ss_dssp HHHHH-TT-E
T ss_pred HHHHH-cCCC
Confidence 56666 9985
No 73
>COG1247 Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]
Probab=97.48 E-value=0.00061 Score=70.45 Aligned_cols=115 Identities=16% Similarity=0.170 Sum_probs=83.9
Q ss_pred CCCceEecEEEEEEEeC-CeEEEEEEEEEeCC-----eeEEEeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEec-
Q 002000 843 LRGQEFGGMYCAILTVN-SSVVSAGILRVFGQ-----EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLP- 915 (983)
Q Consensus 843 ~~r~df~Gfy~~VL~~~-~~vVsaA~lri~g~-----~~AEip~VAT~~~~RgqG~gr~Lv~~IE~~l~~lgV~~LvLp- 915 (983)
|....=.||+.+|++.+ |+++|=|++-.|-. .++|. .|=+++++||+|+|++|+.++.+.+..+|++.++..
T Consensus 44 ~~~~~~~g~p~~V~~~~~g~v~G~a~~~~fr~r~ay~~tve~-SiYv~~~~~g~GiG~~Ll~~Li~~~~~~g~~~lva~I 122 (169)
T COG1247 44 FSGRTRDGYPVVVAEEEDGKVLGYASAGPFRERPAYRHTVEL-SIYLDPAARGKGLGKKLLQALITEARALGVRELVAGI 122 (169)
T ss_pred HHhcccCCceEEEEEcCCCeEEEEEEeeeccCccccceEEEE-EEEECcccccccHHHHHHHHHHHHHHhCCeEEEEEEE
Confidence 33334356899999865 99999988877663 45553 466899999999999999999999999999887654
Q ss_pred -chhhhHHHHHhccCcEEcCHHHHHHHHhcCCceEEeCCCeeeeecccC
Q 002000 916 -AAEEAESIWTDKFGFKKIDPELLSIYRKRCSQLVTFKGTSMLQKRVPA 963 (983)
Q Consensus 916 -A~~~A~~~w~~kfGF~~v~~~~~~~~~~~~~~ll~F~gt~mLqK~l~~ 963 (983)
+...|.--...+|||...+....--+ ..-.+-.+.++|+.|..
T Consensus 123 ~~~n~aSi~lh~~~GF~~~G~~~~vg~-----k~g~wld~~~~~~~l~~ 166 (169)
T COG1247 123 ESDNLASIALHEKLGFEEVGTFPEVGD-----KFGRWLDLVLMQLLLEE 166 (169)
T ss_pred cCCCcHhHHHHHHCCCEEecccccccc-----ccceEEeeeeeehhhcc
Confidence 22335555566699999988443322 23466677788887754
No 74
>PRK10151 ribosomal-protein-L7/L12-serine acetyltransferase; Provisional
Probab=97.44 E-value=0.00086 Score=67.80 Aligned_cols=78 Identities=8% Similarity=0.060 Sum_probs=63.0
Q ss_pred EeCCeEEEEEEEEEeCC--eeEEEeeeEeecCcccCChhHHHHHHHHHHhh-hcCccEEEecchh---hhHHHHHhccCc
Q 002000 857 TVNSSVVSAGILRVFGQ--EVAELPLVATSKINHGKGYFQLLFACIEKLLS-FLRVKSIVLPAAE---EAESIWTDKFGF 930 (983)
Q Consensus 857 ~~~~~vVsaA~lri~g~--~~AEip~VAT~~~~RgqG~gr~Lv~~IE~~l~-~lgV~~LvLpA~~---~A~~~w~~kfGF 930 (983)
..+|++||.+.++.... ..+||.. .+.++|||||||+.++.++.+.+. .+|+++|.+.+.. .+..++.+ +||
T Consensus 73 ~~~~~~iG~~~l~~~~~~~~~~~ig~-~i~~~~~g~G~~tea~~~l~~~~~~~~~~~ri~~~v~~~N~~S~~v~ek-~Gf 150 (179)
T PRK10151 73 FKEDELIGVLSFNRIEPLNKTAYIGY-WLDESHQGQGIISQALQALIHHYAQSGELRRFVIKCRVDNPASNQVALR-NGF 150 (179)
T ss_pred EECCEEEEEEEEEeeccCCCceEEEE-EEChhhcCCcHHHHHHHHHHHHHHhhCCccEEEEEEcCCCHHHHHHHHH-CCC
Confidence 46899999999876543 5689876 689999999999999999999776 5789998876543 36778877 999
Q ss_pred EEcCHH
Q 002000 931 KKIDPE 936 (983)
Q Consensus 931 ~~v~~~ 936 (983)
+..+..
T Consensus 151 ~~~g~~ 156 (179)
T PRK10151 151 TLEGCL 156 (179)
T ss_pred EEEeEe
Confidence 987653
No 75
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=97.43 E-value=3.5e-05 Score=91.47 Aligned_cols=128 Identities=23% Similarity=0.490 Sum_probs=74.9
Q ss_pred cccccccc---cCCCeeccCCCCCccCcccCC--CCCCCCCCcccccccccccccccccccccccccccccccCchhchh
Q 002000 604 DDLCTICA---DGGNLLPCDGCPRAFHKECAS--LSSIPQGDWYCKYCQNMFERKRFLQHDANAVEAGRVSGVDSVEQIT 678 (983)
Q Consensus 604 dd~C~VC~---dgG~Ll~CD~CprafH~~Cl~--l~~vP~g~W~C~~C~~~~~~ek~v~~n~na~a~g~~~Gvd~~eqi~ 678 (983)
.-.|..|+ |...+++|+.|+-+||-+|.. .+.++.|.|+|+.|..+.+... ..+| ...+.-+ ..
T Consensus 68 crvCe~c~~~gD~~kf~~Ck~cDvsyh~yc~~P~~~~v~sg~~~ckk~~~c~qc~~--------~lpg--~s~~~~~-~~ 136 (694)
T KOG4443|consen 68 CRVCEACGTTGDPKKFLLCKRCDVSYHCYCQKPPNDKVPSGPWLCKKCTRCRQCDS--------TLPG--LSLDLQE-GY 136 (694)
T ss_pred ceeeeeccccCCcccccccccccccccccccCCccccccCcccccHHHHhhhhccc--------cccc--cchhhhc-cC
Confidence 34566677 445699999999999999994 7799999999999975433221 1111 0011100 00
Q ss_pred hhhhceeccccccCCcccccccCCCCCCCCCCCceecCCCCCCccCcccCCcccCCccccCCCCCeEecCCch
Q 002000 679 KRCIRIVKNLEAELSGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCS 751 (983)
Q Consensus 679 kRC~r~vk~~e~e~~~C~IC~~~dfs~sgf~~~tLL~CDqCerayHv~CL~~~~m~~LkelP~g~WfC~~~C~ 751 (983)
.-|+... ...+|++|....... +.-.++.|++|.+|-|-.|-.-..+..+...-.-.+-| ..|.
T Consensus 137 ~~~~~c~-----s~~~cPvc~~~Y~~~---e~~~~~~c~~c~rwsh~~c~~~sdd~~~q~~vD~~~~C-S~CR 200 (694)
T KOG4443|consen 137 LQCAPCA-----SLSYCPVCLIVYQDS---ESLPMVCCSICQRWSHGGCDGISDDKYMQAQVDLQYKC-STCR 200 (694)
T ss_pred ccccccc-----ccccCchHHHhhhhc---cchhhHHHHHhcccccCCCCccchHHHHHHhhhhhccc-ceee
Confidence 1111111 134588887643211 23356999999999999997543321111111135667 6775
No 76
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG3397 consensus Acetyltransferases [General function prediction only]
Probab=97.36 E-value=0.00032 Score=72.14 Aligned_cols=77 Identities=19% Similarity=0.302 Sum_probs=63.4
Q ss_pred CCeEEEEEEEEEeC-C-eeEEEeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEecchhhhHHHHHhccCcEEcCHH
Q 002000 859 NSSVVSAGILRVFG-Q-EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKIDPE 936 (983)
Q Consensus 859 ~~~vVsaA~lri~g-~-~~AEip~VAT~~~~RgqG~gr~Lv~~IE~~l~~lgV~~LvLpA~~~A~~~w~~kfGF~~v~~~ 936 (983)
..+|||-++|--.- . ..--+-.|.|.+.+||||+||.||+..|..++..|++.+.|.+.+| ..||++ +||+.-+.-
T Consensus 65 ~~~VigH~rLS~i~n~~~al~VEsVVV~k~~RG~GFGk~lMk~~E~~~R~~gf~~~yLsT~DQ-~~FYe~-lGYe~c~Pi 142 (225)
T KOG3397|consen 65 NDEVLGHSRLSHLPNRDHALWVESVVVKKDQRGLGFGKFLMKSTEKWMREKGFNEAYLSTDDQ-CRFYES-LGYEKCDPI 142 (225)
T ss_pred ccceeeeeccccCCCCCceeEEEEEEEehhhccccHHHHHHHHHHHHHHHhhhhheeeecccc-hhhhhh-hcccccCce
Confidence 35777777664333 2 4566789999999999999999999999999999999999988755 689999 999977664
Q ss_pred H
Q 002000 937 L 937 (983)
Q Consensus 937 ~ 937 (983)
+
T Consensus 143 ~ 143 (225)
T KOG3397|consen 143 V 143 (225)
T ss_pred e
Confidence 4
No 78
>smart00258 SAND SAND domain.
Probab=97.08 E-value=0.00027 Score=63.55 Aligned_cols=62 Identities=23% Similarity=0.298 Sum_probs=47.2
Q ss_pred EEEe-eCcEEeecceecCCCeeecCC-CCccCccceeeccCccCCCCCcceEEccCCCchHHHHH
Q 002000 528 VGYY-ACGQKLLEGYKNGLGIICHCC-NSEVSPSQFEAHAGWSSRRKPYAHIYTSNGVSLHQLAI 590 (983)
Q Consensus 528 V~Yy-~~gq~ll~G~~~g~GI~C~CC-~~~~SpSeFE~HAG~~srrkPy~~I~lsnG~SL~dl~~ 590 (983)
|++. .+|...++-+..|..-.|..+ ++|+||++||.+||.+..++|..+| ..+|++|..++.
T Consensus 5 V~CG~~~g~L~~~kf~~G~~~kCI~~~~~~~TP~eFe~~~g~~~~K~WK~sI-R~~g~~Lr~L~~ 68 (73)
T smart00258 5 VTCGTVKGILYKKKFKCGISVKCIQYEDKWFTPKEFEIEGGKGKSKDWKRSI-RCGGSSLRTLME 68 (73)
T ss_pred eeeCCeeeeeeHhhhhcCcccCCccCCCEEEChHHHHhhcCCcccCCcchhe-eECCccHHHHHH
Confidence 4444 345566666666444455555 6799999999999999999999999 569999998875
No 79
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=97.01 E-value=0.0003 Score=81.23 Aligned_cols=125 Identities=28% Similarity=0.607 Sum_probs=77.4
Q ss_pred cccccccc-----cCCCeeccCCCCCccCcccCCCC---CCCC-------CCccccccccccc-ccccccccccc-----
Q 002000 604 DDLCTICA-----DGGNLLPCDGCPRAFHKECASLS---SIPQ-------GDWYCKYCQNMFE-RKRFLQHDANA----- 662 (983)
Q Consensus 604 dd~C~VC~-----dgG~Ll~CD~CprafH~~Cl~l~---~vP~-------g~W~C~~C~~~~~-~ek~v~~n~na----- 662 (983)
-..|.||. +.|+++-||.|+-..|..|++.. ++|. ..|||.-|.+.+. +...+..|..+
T Consensus 119 ~~iCcVClg~rs~da~ei~qCd~CGi~VHEgCYGv~dn~si~s~~s~~stepWfCeaC~~Gvs~P~CElCPn~~GifKet 198 (707)
T KOG0957|consen 119 AVICCVCLGQRSVDAGEILQCDKCGINVHEGCYGVLDNVSIPSGSSDCSTEPWFCEACLYGVSLPHCELCPNRFGIFKET 198 (707)
T ss_pred ceEEEEeecCccccccceeeccccCceecccccccccccccCCCCccCCCCchhhhhHhcCCCCCccccCCCcCCccccc
Confidence 34899998 46889999999999999999743 3333 4699999987642 11111111111
Q ss_pred --------cccccccccCchhchhhhhhceeccccccC---CcccccccCCCCCCCCCCCceecCC--CCCCccCcccCC
Q 002000 663 --------VEAGRVSGVDSVEQITKRCIRIVKNLEAEL---SGCLLCRGCDFSKSGFGPRTILLCD--QCEREFHVGCLK 729 (983)
Q Consensus 663 --------~a~g~~~Gvd~~eqi~kRC~r~vk~~e~e~---~~C~IC~~~dfs~sgf~~~tLL~CD--qCerayHv~CL~ 729 (983)
+.+--+.||. ..++.++|.-.+..++... -.|..|...-|.+.| ..+.|| .|..+|||.|.+
T Consensus 199 DigrWvH~iCALYvpGVa-fg~~~~l~~Vtl~em~ysk~Gak~Cs~Ced~~fARtG----vci~CdaGMCk~YfHVTCAQ 273 (707)
T KOG0957|consen 199 DIGRWVHAICALYVPGVA-FGQTHTLCGVTLEEMDYSKFGAKTCSACEDKIFARTG----VCIRCDAGMCKEYFHVTCAQ 273 (707)
T ss_pred chhhHHHHHHHhhcCccc-cccccccccccHHHhhhhhhccchhccccchhhhhcc----eeeeccchhhhhhhhhhHHh
Confidence 1111233332 2334444433333333221 229999987766554 678898 899999999988
Q ss_pred cccC
Q 002000 730 KHKM 733 (983)
Q Consensus 730 ~~~m 733 (983)
..++
T Consensus 274 k~Gl 277 (707)
T KOG0957|consen 274 KLGL 277 (707)
T ss_pred hhcc
Confidence 7654
No 80
>KOG3216 consensus Diamine acetyltransferase [Amino acid transport and metabolism]
Probab=96.95 E-value=0.01 Score=60.37 Aligned_cols=123 Identities=17% Similarity=0.153 Sum_probs=91.8
Q ss_pred hhHHHHHHHHHhhhhcCCCcccCCCCCCcccchhccccCCCceEecEEEEEEEe-CCeEEEEEEEEEe-----CCeeEEE
Q 002000 805 ETRLLLSQAVAIFHDCFDPIVDSISGRDLIPSMVYGRNLRGQEFGGMYCAILTV-NSSVVSAGILRVF-----GQEVAEL 878 (983)
Q Consensus 805 e~~skLa~AL~If~EcFdPivD~~Sg~DLIp~MVy~~~~~r~df~Gfy~~VL~~-~~~vVsaA~lri~-----g~~~AEi 878 (983)
+.-.+|-.-++.|.++=+|.+- |..+|..+- |..-.|.-.+.+.++. ++++||-|.+..+ |.+.--|
T Consensus 15 ~~i~rLikela~Fek~~~~v~~--te~~l~~~~-----F~d~~~~~~~v~~ie~~~~~~aGf~~yf~~ystW~~k~~iYl 87 (163)
T KOG3216|consen 15 EDILRLIKELAEFEKLEDQVEA--TEENLARDG-----FIDPPFKHWLVAAIETSGEVVAGFALYFNNYSTWLGKQGIYL 87 (163)
T ss_pred HHHHHHHHHHHHHHHhccchhh--chhhhhhhh-----ccCCCccEEEEEEEecCCCceeEEeeeecccccccccceEEE
Confidence 4445566777788887777644 444443322 4444556666666665 7899999988753 3456677
Q ss_pred eeeEeecCcccCChhHHHHHHHHHHhhhcCccEE---EecchhhhHHHHHhccCcEEcCH
Q 002000 879 PLVATSKINHGKGYFQLLFACIEKLLSFLRVKSI---VLPAAEEAESIWTDKFGFKKIDP 935 (983)
Q Consensus 879 p~VAT~~~~RgqG~gr~Lv~~IE~~l~~lgV~~L---vLpA~~~A~~~w~~kfGF~~v~~ 935 (983)
-=+=|+++|||+|+|+.|++.+-++|..+|..++ ++.--.-|+.+|++ .|++..+.
T Consensus 88 eDlyV~e~yR~kG~Gs~Ll~~va~~A~~~G~~rv~w~vldwN~rAi~lY~k-~gaq~l~~ 146 (163)
T KOG3216|consen 88 EDLYVREQYRGKGIGSKLLKFVAEEADKLGTPRVEWVVLDWNHRAILLYEK-VGAQDLKE 146 (163)
T ss_pred EeeEecchhcccChHHHHHHHHHHHHHHcCCCcEEEEEeccchhHHHHHHH-hCccccce
Confidence 7788999999999999999999999999999885 55555779999999 99987766
No 81
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=96.94 E-value=0.00035 Score=84.08 Aligned_cols=46 Identities=37% Similarity=0.925 Sum_probs=38.5
Q ss_pred ccccccccccC---CCeeccCCCCCc-cCcccCC--CCCCCCCCcccccccc
Q 002000 603 NDDLCTICADG---GNLLPCDGCPRA-FHKECAS--LSSIPQGDWYCKYCQN 648 (983)
Q Consensus 603 ndd~C~VC~dg---G~Ll~CD~Cpra-fH~~Cl~--l~~vP~g~W~C~~C~~ 648 (983)
....|.||.-. ..||+||.|..+ ||.+||+ +.++|-++|||+.|.-
T Consensus 214 E~~~C~IC~~~DpEdVLLLCDsCN~~~YH~YCLDPdl~eiP~~eWYC~NC~d 265 (1134)
T KOG0825|consen 214 EEVKCDICTVHDPEDVLLLCDSCNKVYYHVYCLDPDLSESPVNEWYCTNCSL 265 (1134)
T ss_pred ccccceeeccCChHHhheeecccccceeeccccCcccccccccceecCcchh
Confidence 34569999843 449999999999 9999996 5679999999999953
No 82
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=96.89 E-value=0.00038 Score=76.90 Aligned_cols=42 Identities=38% Similarity=1.094 Sum_probs=37.9
Q ss_pred cccccccCCCeeccCC--CC-CccCcccCCCCCCCCCCcccccccc
Q 002000 606 LCTICADGGNLLPCDG--CP-RAFHKECASLSSIPQGDWYCKYCQN 648 (983)
Q Consensus 606 ~C~VC~dgG~Ll~CD~--Cp-rafH~~Cl~l~~vP~g~W~C~~C~~ 648 (983)
+|. |...|+++-||. |+ .=||+.|+||...|.|.|||+.|..
T Consensus 223 ~Cn-qvsyg~Mi~CDn~~C~~eWFH~~CVGL~~~PkgkWyC~~C~~ 267 (274)
T KOG1973|consen 223 ICN-QVSYGKMIGCDNPGCPIEWFHFTCVGLKTKPKGKWYCPRCKA 267 (274)
T ss_pred Eec-ccccccccccCCCCCCcceEEEeccccccCCCCcccchhhhh
Confidence 354 668899999998 99 8999999999999999999999985
No 83
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=96.87 E-value=0.00046 Score=74.47 Aligned_cols=44 Identities=39% Similarity=1.120 Sum_probs=36.3
Q ss_pred cccccccCCCCCCCCCCCceecCC--CCC-CccCcccCCcccCCccccCCCCCeEecCCchh
Q 002000 694 GCLLCRGCDFSKSGFGPRTILLCD--QCE-REFHVGCLKKHKMADLRELPKGKWFCCMDCSR 752 (983)
Q Consensus 694 ~C~IC~~~dfs~sgf~~~tLL~CD--qCe-rayHv~CL~~~~m~~LkelP~g~WfC~~~C~~ 752 (983)
+| +|.+. ..+.|+-|| -|+ .|||..|+ +|++.|+|.||| ++|..
T Consensus 223 YC-fCqqv-------SyGqMVaCDn~nCkrEWFH~~CV------GLk~pPKG~WYC-~eCk~ 269 (271)
T COG5034 223 YC-FCQQV-------SYGQMVACDNANCKREWFHLECV------GLKEPPKGKWYC-PECKK 269 (271)
T ss_pred EE-Eeccc-------ccccceecCCCCCchhheecccc------ccCCCCCCcEeC-HHhHh
Confidence 45 57765 356899999 798 68899999 688999999999 79964
No 84
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=96.84 E-value=0.00043 Score=76.53 Aligned_cols=37 Identities=38% Similarity=0.992 Sum_probs=31.8
Q ss_pred CCCceecCCC--CC-CccCcccCCcccCCccccCCCCCeEecCCchh
Q 002000 709 GPRTILLCDQ--CE-REFHVGCLKKHKMADLRELPKGKWFCCMDCSR 752 (983)
Q Consensus 709 ~~~tLL~CDq--Ce-rayHv~CL~~~~m~~LkelP~g~WfC~~~C~~ 752 (983)
..+.|+-||. |+ .|||..|+ +|+..|.|+|||+ .|..
T Consensus 228 syg~Mi~CDn~~C~~eWFH~~CV------GL~~~PkgkWyC~-~C~~ 267 (274)
T KOG1973|consen 228 SYGKMIGCDNPGCPIEWFHFTCV------GLKTKPKGKWYCP-RCKA 267 (274)
T ss_pred ccccccccCCCCCCcceEEEecc------ccccCCCCcccch-hhhh
Confidence 3568999997 99 99999999 6788899999995 7753
No 85
>PF01342 SAND: SAND domain; InterPro: IPR000770 The SAND domain (named after Sp100, AIRE-1, NucP41/75, DEAF-1) is a conserved ~80 residue region found in a number of nuclear proteins, many of which function in chromatin-dependent transcriptional control. These include proteins linked to various human diseases, such as the Sp100 (Speckled protein 100 kDa), NUDR (Nuclear DEAF-1 related), GMEB (Glucocorticoid Modulatory Element Binding) proteins and AIRE-1 (Autoimmune regulator 1) proteins. Proteins containing the SAND domain have a modular structure; the SAND domain can be associated with a number of other modules, including the bromodomain, the PHD finger and the MYND finger. Because no SAND domain has been found in yeast, it is thought that the SAND domain could be restricted to animal phyla. Many SAND domain-containing proteins, including NUDR, DEAF-1 (Deformed epidermal autoregulatory factor-1) and GMEB, have been shown to bind DNA sequences specifically. The SAND domain has been proposed to mediate the DNA binding activity of these proteins [, ]. The resolution of the 3D structure of the SAND domain from Sp100b has revealed that it consists of a novel alpha/beta fold. The SAND domain adopts a compact fold consisting of a strongly twisted, five-stranded antiparallel beta-sheet with four alpha-helices packing against one side of the beta-sheet. The opposite side of the beta-sheet is solvent exposed. The beta-sheet and alpha-helical parts of the structure form two distinct regions. Multiple hydrophobic residues pack between these regions to form a structural core. A conserved KDWK sequence motif is found within the alpha-helical, positively charged surface patch. The DNA binding surface has been mapped to the alpha-helical region encompassing the KDWK motif [].; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 1OQJ_B 1UFN_A 1H5P_A.
Probab=96.63 E-value=0.00025 Score=65.12 Aligned_cols=64 Identities=27% Similarity=0.332 Sum_probs=44.7
Q ss_pred eEEEe-eCcEEeecce-ecCCCeeecCC-CCccCccceeeccCccCCCCCcceEEccCCCchHHHHHh
Q 002000 527 EVGYY-ACGQKLLEGY-KNGLGIICHCC-NSEVSPSQFEAHAGWSSRRKPYAHIYTSNGVSLHQLAIS 591 (983)
Q Consensus 527 kV~Yy-~~gq~ll~G~-~~g~GI~C~CC-~~~~SpSeFE~HAG~~srrkPy~~I~lsnG~SL~dl~~~ 591 (983)
+|++. .+|...++-+ ..+..-.|..+ +.|+||++||.|+|+.+.++|..+|+. +|.+|..++..
T Consensus 12 pVtCG~~~G~L~~~k~~~~g~~~kCI~~~g~~~TP~eFE~~~G~~~sK~WK~SIr~-~g~~L~~li~~ 78 (82)
T PF01342_consen 12 PVTCGDVKGTLYKKKFVKQGICGKCIQCEGRWFTPSEFERHGGKGSSKDWKRSIRC-GGEPLGKLIEK 78 (82)
T ss_dssp EEEETTEEEEEEHHHH-TTGTTSS-EEETTEEE-HHHHHHHHTTCTCS-HHHHSEE-TTEEHHHHHHT
T ss_pred eeEeCCeEEEEEHHHhhcccccCceEeeCCcEECHHHHHhhcCcccCCCCCccEEE-CCEEHHHHHhh
Confidence 45555 3565555544 33333344443 789999999999999999999999976 99999988753
No 86
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=96.48 E-value=0.0011 Score=76.86 Aligned_cols=46 Identities=35% Similarity=0.951 Sum_probs=39.3
Q ss_pred cccccccCCCCCCCCCCCceecCCCCCCccCcccCCcccCCccccCCC----CCeEecCCc
Q 002000 694 GCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPK----GKWFCCMDC 750 (983)
Q Consensus 694 ~C~IC~~~dfs~sgf~~~tLL~CDqCerayHv~CL~~~~m~~LkelP~----g~WfC~~~C 750 (983)
.|.||++.. +...+++||.|..-||++||.| +|+.+|. ..|.| ..|
T Consensus 546 sCgiCkks~------dQHll~~CDtC~lhYHlGCL~P----PLTR~Pkk~kn~gWqC-sEC 595 (707)
T KOG0957|consen 546 SCGICKKST------DQHLLTQCDTCHLHYHLGCLSP----PLTRLPKKNKNFGWQC-SEC 595 (707)
T ss_pred eeeeeccch------hhHHHhhcchhhceeeccccCC----ccccCcccccCcceee-ccc
Confidence 499999864 5667899999999999999998 6777776 45999 799
No 87
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=96.41 E-value=0.0013 Score=71.03 Aligned_cols=45 Identities=40% Similarity=1.083 Sum_probs=37.7
Q ss_pred cccccccccc--CCCeeccCC--CCC-ccCcccCCCCCCCCCCcccccccc
Q 002000 603 NDDLCTICAD--GGNLLPCDG--CPR-AFHKECASLSSIPQGDWYCKYCQN 648 (983)
Q Consensus 603 ndd~C~VC~d--gG~Ll~CD~--Cpr-afH~~Cl~l~~vP~g~W~C~~C~~ 648 (983)
+.-+|. |.. -|+++-||+ |.+ =||..|++|...|.|.|||+.|+.
T Consensus 220 e~lYCf-CqqvSyGqMVaCDn~nCkrEWFH~~CVGLk~pPKG~WYC~eCk~ 269 (271)
T COG5034 220 EELYCF-CQQVSYGQMVACDNANCKREWFHLECVGLKEPPKGKWYCPECKK 269 (271)
T ss_pred ceeEEE-ecccccccceecCCCCCchhheeccccccCCCCCCcEeCHHhHh
Confidence 344553 664 489999998 988 799999999999999999999974
No 88
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=96.36 E-value=0.006 Score=57.03 Aligned_cols=75 Identities=16% Similarity=0.179 Sum_probs=56.6
Q ss_pred EEEeCCeEEEEEEEEEeCCeeEEEeeeEeecCcccCChhHHHHHHHHHHhhhcCccE-EEec-chhhhHHHHHhccCcEE
Q 002000 855 ILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKS-IVLP-AAEEAESIWTDKFGFKK 932 (983)
Q Consensus 855 VL~~~~~vVsaA~lri~g~~~AEip~VAT~~~~RgqG~gr~Lv~~IE~~l~~lgV~~-LvLp-A~~~A~~~w~~kfGF~~ 932 (983)
||--+|.+||=.. -+..+||+.-.|.|+|||||+.+.++....+.|..+|+.- ..+. +-+..+.+-.+ +||..
T Consensus 3 llgpeG~PVSW~l----mdqtge~rmgyTlPeyR~~G~~~~v~~~~~~~L~~~g~P~Y~hv~~~N~~~~r~~~~-lg~~~ 77 (89)
T PF08444_consen 3 LLGPEGNPVSWSL----MDQTGEMRMGYTLPEYRGQGLMSQVMYHLAQYLHKLGFPFYGHVDEDNEASQRLSKS-LGFIF 77 (89)
T ss_pred ccCCCCCEeEEEE----ecccccccccccCHhHhcCCHHHHHHHHHHHHHHHCCCCeEeehHhccHHHHHHHHH-CCCee
Confidence 3445688888554 3578999999999999999999999999999999999983 2222 22333444444 88887
Q ss_pred cC
Q 002000 933 ID 934 (983)
Q Consensus 933 v~ 934 (983)
++
T Consensus 78 ~p 79 (89)
T PF08444_consen 78 MP 79 (89)
T ss_pred cC
Confidence 75
No 89
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=96.20 E-value=0.031 Score=50.75 Aligned_cols=58 Identities=12% Similarity=0.029 Sum_probs=49.9
Q ss_pred EEEeCCeEEEEEEEEEeCCeeEEEeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEE
Q 002000 855 ILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIV 913 (983)
Q Consensus 855 VL~~~~~vVsaA~lri~g~~~AEip~VAT~~~~RgqG~gr~Lv~~IE~~l~~lgV~~Lv 913 (983)
.+..+|+.+|...++. ..+...|--.-|.+++||||+|+.||+++.+.++.-|.+-+-
T Consensus 3 ~~~~~g~~~a~l~Y~~-~~~~~~i~hT~V~~~~rGqGia~~L~~~~l~~a~~~~~kv~p 60 (78)
T PF14542_consen 3 ELKDDGEEIAELTYRE-DGGVIVITHTEVPPELRGQGIAKKLVEAALDYARENGLKVVP 60 (78)
T ss_dssp EEESSTTEEEEEEEEE-SSSEEEEEEEEE-CSSSTTTHHHHHHHHHHHHHHHTT-EEEE
T ss_pred EEEECCEEEEEEEEEe-CCCEEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCEEEE
Confidence 4567788999999977 778999999999999999999999999999999999977553
No 90
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=96.20 E-value=0.017 Score=64.05 Aligned_cols=79 Identities=20% Similarity=0.298 Sum_probs=69.3
Q ss_pred EEEEEEEeCCeEEEEEEEEEeCCeeEEEeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEecchhhhHHHHHhccCc
Q 002000 851 MYCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGF 930 (983)
Q Consensus 851 fy~~VL~~~~~vVsaA~lri~g~~~AEip~VAT~~~~RgqG~gr~Lv~~IE~~l~~lgV~~LvLpA~~~A~~~w~~kfGF 930 (983)
++|++...++++|+|+++ .|. -|.-|||++.+||-|+.-.|+..+..++-++|...||+-+-++-..+|.. +||
T Consensus 37 ~~v~~~~~~~~iiacGsi--aGn---vikcvAvs~s~qGeGl~lkl~TeLin~ay~~g~~hLFiyTKp~~~~lFk~-~GF 110 (352)
T COG3053 37 YFVAIYRDNEEIIACGSI--AGN---VIKCVAVSESLQGEGLALKLVTELINLAYERGRTHLFIYTKPEYAALFKQ-CGF 110 (352)
T ss_pred EEEEEEcCCCcEEEeccc--ccc---eeEEEEechhcccccHHHHHHHHHHHHHHHcCCceEEEEechhHHHHHHh-CCc
Confidence 344444456999999995 564 38999999999999999999999999999999999999999999999999 999
Q ss_pred EEcCH
Q 002000 931 KKIDP 935 (983)
Q Consensus 931 ~~v~~ 935 (983)
..+..
T Consensus 111 ~~i~~ 115 (352)
T COG3053 111 SEIAS 115 (352)
T ss_pred eEeec
Confidence 98876
No 91
>PF12746 GNAT_acetyltran: GNAT acetyltransferase; PDB: 3G3S_B.
Probab=96.18 E-value=0.028 Score=62.17 Aligned_cols=76 Identities=16% Similarity=-0.014 Sum_probs=54.6
Q ss_pred EeCCeEEEEEEEEEeCCeeEEEeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEecchhhhHHHHHhccCcEEcC
Q 002000 857 TVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKID 934 (983)
Q Consensus 857 ~~~~~vVsaA~lri~g~~~AEip~VAT~~~~RgqG~gr~Lv~~IE~~l~~lgV~~LvLpA~~~A~~~w~~kfGF~~v~ 934 (983)
..+|+|||.|+-.....+.+||- |+|.++|||||+++++..++......-|+--.|=-+ ..+-----.|+||+...
T Consensus 171 ~~~~~iVs~~~s~~~~~~~~EI~-I~T~~~yR~kGLA~~~aa~~I~~Cl~~~l~P~WDc~-N~~S~~lA~kLGf~~~~ 246 (265)
T PF12746_consen 171 LHDGEIVSGCSSYFVYENGIEID-IETHPEYRGKGLATAVAAAFILECLENGLYPSWDCH-NLASIALAEKLGFHFDF 246 (265)
T ss_dssp EETTEEEEEEEEEEEETTEEEEE-EEE-CCCTTSSHHHHHHHHHHHHHHHTT-EEE-EES-SHHHHHHHHHCT--EEE
T ss_pred EECCEEEEEEEEEEEECCEEEEE-EEECHHhhcCCHHHHHHHHHHHHHHHCCCCcCeeCC-CHHHHHHHHHcCCcccc
Confidence 56899999777666667788986 799999999999999999999999999988777433 33333333469998654
No 92
>PF12568 DUF3749: Acetyltransferase (GNAT) domain; InterPro: IPR024612 This domain is found in uncharacterised proteins from Gammaproteobacteria, and is approximately 40 amino acids in length. It contains two completely conserved residues (D and I) that may be functionally important. Proteins having this domain are frequently annotated as acetyltransferases of the GNAT family; however there is little accompanying annotation to confirm this.; PDB: 2K5T_A.
Probab=96.17 E-value=0.036 Score=55.09 Aligned_cols=82 Identities=18% Similarity=0.246 Sum_probs=58.1
Q ss_pred ecEEEEEEEeCCeEEEEEEEEEeCCeeEEEeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEecch------hhhHH
Q 002000 849 GGMYCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAA------EEAES 922 (983)
Q Consensus 849 ~Gfy~~VL~~~~~vVsaA~lri~g~~~AEip~VAT~~~~RgqG~gr~Lv~~IE~~l~~lgV~~LvLpA~------~~A~~ 922 (983)
.-+|++ .-|+.++||+.+.+.|. -|+|--+.|++.=||.|+|..|++.+.+.+.. |....+.+. ..+..
T Consensus 38 ~~l~aA--rFNdRlLgAv~v~~~~~-~~~L~~l~VRevTRrRGVG~yLlee~~rq~p~--i~~w~l~~~~~~~~~~~~~~ 112 (128)
T PF12568_consen 38 HRLFAA--RFNDRLLGAVKVTISGQ-QAELSDLCVREVTRRRGVGLYLLEEVLRQLPD--IKHWWLADEGVEPQDRAVMA 112 (128)
T ss_dssp EEEEEE--EETTEEEEEEEEEEETT-EEEEEEEEE-TT-SSSSHHHHHHHHHHHHS-S----EEEE--TT-S--THHHHH
T ss_pred CeEEEE--EechheeeeEEEEEcCc-ceEEeeEEEeeccccccHHHHHHHHHHHHCCC--CcEEEEecCCCcccchHHHH
Confidence 335555 78999999999999875 79999999999999999999999999999954 445444433 23455
Q ss_pred HHHhccCcEEcCH
Q 002000 923 IWTDKFGFKKIDP 935 (983)
Q Consensus 923 ~w~~kfGF~~v~~ 935 (983)
.+...+||...++
T Consensus 113 ~Fm~a~GF~~~~~ 125 (128)
T PF12568_consen 113 AFMQACGFSAQSD 125 (128)
T ss_dssp HHHHHHT-EE-SS
T ss_pred HHHHHcCccccCC
Confidence 5666699987653
No 93
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=96.07 E-value=0.0074 Score=74.53 Aligned_cols=58 Identities=16% Similarity=0.095 Sum_probs=48.7
Q ss_pred EEEeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEe--cchhhhHHHHHhccCcEEcCH
Q 002000 876 AELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVL--PAAEEAESIWTDKFGFKKIDP 935 (983)
Q Consensus 876 AEip~VAT~~~~RgqG~gr~Lv~~IE~~l~~lgV~~LvL--pA~~~A~~~w~~kfGF~~v~~ 935 (983)
|.|-+|||+|++|++|||++|++.++++++ .|+..|-. .+.++...||.+ .||.++-=
T Consensus 532 ~RIvRIAvhPe~q~~GiGsrlL~~l~~~a~-~~~DwlgvsFG~t~~L~rFW~r-nGF~pVhl 591 (758)
T COG1444 532 WRIVRIAVHPELQRMGIGSRLLALLIEEAR-KGLDWLGVSFGYTEELLRFWLR-NGFVPVHL 591 (758)
T ss_pred eeEEEEEeCHHHHhcCHHHHHHHHHHHHHh-cCCCEEeeccCCCHHHHHHHHH-cCeEEEEe
Confidence 678899999999999999999999999996 44444443 377889999999 99998754
No 94
>COG0454 WecD Histone acetyltransferase HPA2 and related acetyltransferases [Transcription / General function prediction only]
Probab=96.01 E-value=0.0082 Score=50.83 Aligned_cols=44 Identities=16% Similarity=0.120 Sum_probs=39.2
Q ss_pred eEeecCcccCChhHHHHHHHHHHhhhcCccEEEecchhhhHHHHHhccCc
Q 002000 881 VATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGF 930 (983)
Q Consensus 881 VAT~~~~RgqG~gr~Lv~~IE~~l~~lgV~~LvLpA~~~A~~~w~~kfGF 930 (983)
++|+++|||+|+|+.|+..+++.+...|+. ....+..+|.. +||
T Consensus 87 l~v~~~~rg~Gig~~Ll~~~~~~~~~~g~~-----~~~~~~~~~~~-~~~ 130 (156)
T COG0454 87 LYVLPEYRGKGIGSALLEAALEWARKRGIS-----LNRLALEVYEK-NGF 130 (156)
T ss_pred EEecchhhccchHHHHHHHHHHHHHHcCce-----ehHHHHHHHHh-cCC
Confidence 999999999999999999999999998887 55566778887 888
No 95
>COG2388 Predicted acetyltransferase [General function prediction only]
Probab=95.98 E-value=0.016 Score=55.21 Aligned_cols=61 Identities=16% Similarity=0.097 Sum_probs=55.6
Q ss_pred ecEEEEEEEeCCeEEEEEEEEEeCCeeEEEeeeEeecCcccCChhHHHHHHHHHHhhhcCccE
Q 002000 849 GGMYCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKS 911 (983)
Q Consensus 849 ~Gfy~~VL~~~~~vVsaA~lri~g~~~AEip~VAT~~~~RgqG~gr~Lv~~IE~~l~~lgV~~ 911 (983)
.++|++ ..+|+.++.++..-.|.+..-|.-.-|..++||||+++.|+....+.++.-|.+-
T Consensus 15 ~~~y~~--~~~G~~~~e~~y~~~~~~~i~i~HT~V~d~lrGqGia~~L~~~al~~ar~~g~ki 75 (99)
T COG2388 15 NGRYVL--TDEGEVIGEATYYDRGENLIIIDHTYVPDELRGQGIAQKLVEKALEEAREAGLKI 75 (99)
T ss_pred ceEEEE--ecCCcEEEEEEEecCCCCEEEEecCcCCHHHcCCcHHHHHHHHHHHHHHHcCCeE
Confidence 567765 8899999999998889999999999999999999999999999999999999753
No 96
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=95.93 E-value=0.0012 Score=51.67 Aligned_cols=34 Identities=44% Similarity=1.111 Sum_probs=20.7
Q ss_pred CCeeccCCCCCccCcccCCCCCCCCC-Cccccccc
Q 002000 614 GNLLPCDGCPRAFHKECASLSSIPQG-DWYCKYCQ 647 (983)
Q Consensus 614 G~Ll~CD~CprafH~~Cl~l~~vP~g-~W~C~~C~ 647 (983)
..++.|+.|.-+.|+.|+++..+|.+ +|+|..|+
T Consensus 2 n~ll~C~~C~v~VH~~CYGv~~~~~~~~W~C~~C~ 36 (36)
T PF13831_consen 2 NPLLFCDNCNVAVHQSCYGVSEVPDGDDWLCDRCE 36 (36)
T ss_dssp CEEEE-SSS--EEEHHHHT-SS--SS-----HHH-
T ss_pred CceEEeCCCCCcCChhhCCcccCCCCCcEECCcCC
Confidence 35899999999999999999999887 89999884
No 97
>KOG2488 consensus Acetyltransferase (GNAT) domain-containing protein [General function prediction only]
Probab=95.91 E-value=0.022 Score=59.84 Aligned_cols=84 Identities=21% Similarity=0.279 Sum_probs=63.8
Q ss_pred EEEEEEEeCCeEEEEEEEEE---eCCeeEEEeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEec---chhhhHHHH
Q 002000 851 MYCAILTVNSSVVSAGILRV---FGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLP---AAEEAESIW 924 (983)
Q Consensus 851 fy~~VL~~~~~vVsaA~lri---~g~~~AEip~VAT~~~~RgqG~gr~Lv~~IE~~l~~lgV~~LvLp---A~~~A~~~w 924 (983)
-|.+.+...+++||-+++|. +|..++=.-=|=+.+.|||+|+|+.|++.+|.++...+.+.++|- .-.-|.+||
T Consensus 93 ~Yi~a~~~~~~~vgf~~Frf~vd~g~~vlYcyEvqv~~~yR~kGiGk~LL~~l~~~a~~~~~~kVmLTVf~~N~~al~Fy 172 (202)
T KOG2488|consen 93 RYICAWNNKSKLVGFTMFRFTVDTGDPVLYCYEVQVASAYRGKGIGKFLLDTLEKLADSRHMRKVMLTVFSENIRALGFY 172 (202)
T ss_pred eEEEEEcCCCceeeEEEEEEEcccCCeEEEEEEEeehhhhhccChHHHHHHHHHHHHHHHHhhhheeeeecccchhHHHH
Confidence 45555555568999999886 333344444455678899999999999999999999998877664 345589999
Q ss_pred HhccCcEEcCH
Q 002000 925 TDKFGFKKIDP 935 (983)
Q Consensus 925 ~~kfGF~~v~~ 935 (983)
.+ +||-+...
T Consensus 173 ~~-~gf~~~~~ 182 (202)
T KOG2488|consen 173 HR-LGFVVDEE 182 (202)
T ss_pred HH-cCcccCCC
Confidence 99 99987665
No 98
>KOG4144 consensus Arylalkylamine N-acetyltransferase [General function prediction only]
Probab=95.77 E-value=0.0069 Score=61.61 Aligned_cols=61 Identities=18% Similarity=0.222 Sum_probs=51.5
Q ss_pred eeEEEeeeEeecCcccCChhHHHHHHHHHHhhh-cCccEEEecchhhhHHHHHhccCcEEcCH
Q 002000 874 EVAELPLVATSKINHGKGYFQLLFACIEKLLSF-LRVKSIVLPAAEEAESIWTDKFGFKKIDP 935 (983)
Q Consensus 874 ~~AEip~VAT~~~~RgqG~gr~Lv~~IE~~l~~-lgV~~LvLpA~~~A~~~w~~kfGF~~v~~ 935 (983)
.-+.|-.+|+.++||.||++..|+..-.+.|.+ -=+++++|-+-+..+|||++ |||+.+++
T Consensus 100 ~ni~iHsl~Ihpa~rk~g~a~~Ll~~ylq~l~~q~i~~r~~Li~h~pLvPFYEr-~gFk~vgp 161 (190)
T KOG4144|consen 100 HNIHIHSLAIHPAFRKQGRAPILLWRYLQHLGSQPIVRRAALICHDPLVPFYER-FGFKAVGP 161 (190)
T ss_pred cceeEEEEEecHHHHhcCcchhHHHHHHHHhhcCccccceeeeecCCccchhHh-cCceeecc
Confidence 348888999999999999999999884444444 44678888898999999999 99999998
No 99
>COG1670 RimL Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]
Probab=95.64 E-value=0.064 Score=52.96 Aligned_cols=88 Identities=17% Similarity=0.201 Sum_probs=67.1
Q ss_pred ecEEEEEEEeC--CeEEEEEEEEEeC----CeeEEEeeeEeecCcccCChhHHHHHHHHHHhhh-cCccEEEecchhhh-
Q 002000 849 GGMYCAILTVN--SSVVSAGILRVFG----QEVAELPLVATSKINHGKGYFQLLFACIEKLLSF-LRVKSIVLPAAEEA- 920 (983)
Q Consensus 849 ~Gfy~~VL~~~--~~vVsaA~lri~g----~~~AEip~VAT~~~~RgqG~gr~Lv~~IE~~l~~-lgV~~LvLpA~~~A- 920 (983)
.+.|.++...+ +++||...+.... .+.+|+...- .+.|+|||++...+.++.+.+-. +++.++++-....-
T Consensus 64 ~~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~ig~~l-~~~~~g~G~~tea~~~~l~~~f~~~~l~ri~~~~~~~N~ 142 (187)
T COG1670 64 GGAFAIELKATGDGELIGVIGLSDIDRAANGDLAEIGYWL-DPEYWGKGYATEALRALLDYAFEELGLHRIEATVDPENE 142 (187)
T ss_pred CceEEEEEEeCCCCeEEEEEEEEEeccccccceEEEEEEE-ChHHhcCchHHHHHHHHHHHhhhhcCceEEEEEecCCCH
Confidence 45566665654 4999999998655 5678887766 99999999999999999988665 99999988766553
Q ss_pred --HHHHHhccCcEEcCHHHH
Q 002000 921 --ESIWTDKFGFKKIDPELL 938 (983)
Q Consensus 921 --~~~w~~kfGF~~v~~~~~ 938 (983)
...+.+ +||+..+.-..
T Consensus 143 ~S~rv~ek-~Gf~~eg~~~~ 161 (187)
T COG1670 143 ASIRVYEK-LGFRLEGELRQ 161 (187)
T ss_pred HHHHHHHH-cCChhhhhhhh
Confidence 445555 99998776443
No 100
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=95.36 E-value=0.01 Score=75.51 Aligned_cols=52 Identities=25% Similarity=0.745 Sum_probs=41.6
Q ss_pred CCcccccccCCCCCCCCCCCceecCCCCCCccCcccCCcccCCccccCCCCCeEecCCchhhH
Q 002000 692 LSGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCSRIN 754 (983)
Q Consensus 692 ~~~C~IC~~~dfs~sgf~~~tLL~CDqCerayHv~CL~~~~m~~LkelP~g~WfC~~~C~~I~ 754 (983)
...|.||.+++-. +-..+++||.|..++|++|.. .+-+|+|.|+| ..|....
T Consensus 219 D~~C~iC~~~~~~----n~n~ivfCD~Cnl~VHq~Cyg------i~~ipeg~WlC-r~Cl~s~ 270 (1051)
T KOG0955|consen 219 DAVCCICLDGECQ----NSNVIVFCDGCNLAVHQECYG------IPFIPEGQWLC-RRCLQSP 270 (1051)
T ss_pred CccceeecccccC----CCceEEEcCCCcchhhhhccC------CCCCCCCcEee-hhhccCc
Confidence 3569999998733 346899999999999999985 45679999999 8885443
No 101
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=95.09 E-value=0.01 Score=60.26 Aligned_cols=26 Identities=42% Similarity=1.106 Sum_probs=22.9
Q ss_pred ccCcccCCcccCCccccCCCCCeEecCCchh
Q 002000 722 EFHVGCLKKHKMADLRELPKGKWFCCMDCSR 752 (983)
Q Consensus 722 ayHv~CL~~~~m~~LkelP~g~WfC~~~C~~ 752 (983)
.||+.||+| +|+++|+|+|+| +.|..
T Consensus 1 g~H~~CL~P----pl~~~P~g~W~C-p~C~~ 26 (148)
T cd04718 1 GFHLCCLRP----PLKEVPEGDWIC-PFCEV 26 (148)
T ss_pred CcccccCCC----CCCCCCCCCcCC-CCCcC
Confidence 499999998 789999999999 68853
No 102
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=95.05 E-value=0.012 Score=59.73 Aligned_cols=25 Identities=40% Similarity=1.132 Sum_probs=22.5
Q ss_pred ccCcccCC--CCCCCCCCccccccccc
Q 002000 625 AFHKECAS--LSSIPQGDWYCKYCQNM 649 (983)
Q Consensus 625 afH~~Cl~--l~~vP~g~W~C~~C~~~ 649 (983)
+||..||. |+.+|+|+|+||.|...
T Consensus 1 g~H~~CL~Ppl~~~P~g~W~Cp~C~~~ 27 (148)
T cd04718 1 GFHLCCLRPPLKEVPEGDWICPFCEVE 27 (148)
T ss_pred CcccccCCCCCCCCCCCCcCCCCCcCC
Confidence 59999994 89999999999999864
No 103
>KOG3138 consensus Predicted N-acetyltransferase [General function prediction only]
Probab=95.00 E-value=0.021 Score=60.18 Aligned_cols=62 Identities=18% Similarity=0.174 Sum_probs=51.2
Q ss_pred eEEEeeeEeecCcccCChhHHHHHHHHHHhhhcC-ccEEEecch---hhhHHHHHhccCcEEcCHHH
Q 002000 875 VAELPLVATSKINHGKGYFQLLFACIEKLLSFLR-VKSIVLPAA---EEAESIWTDKFGFKKIDPEL 937 (983)
Q Consensus 875 ~AEip~VAT~~~~RgqG~gr~Lv~~IE~~l~~lg-V~~LvLpA~---~~A~~~w~~kfGF~~v~~~~ 937 (983)
+.-|-.++|.+.||..|+|..|++.+.+.+...+ .+++.|.++ ..|..||++ +||+.+....
T Consensus 89 ~~yi~~Lgvl~~yR~~gIGs~Ll~~~~~~~~~~~~~~~v~lHv~~~n~~ai~~Y~~-~gF~~~~~~~ 154 (187)
T KOG3138|consen 89 VIYILSLGVLPRYRNKGIGSKLLEFVKKYCSEAHQCRRVYLHVQAVNESAIEFYEK-RGFEIVERLK 154 (187)
T ss_pred eeEEEeecccHHHHhcchHHHHHHHHHHHHhcccccceEEEEEEeCCCcHHHHHHh-cCceEeeccc
Confidence 5779999999999999999999999999999988 666665543 457777777 9999887643
No 104
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=94.99 E-value=0.0067 Score=79.58 Aligned_cols=56 Identities=32% Similarity=0.793 Sum_probs=46.7
Q ss_pred cCCcccccccCCCCCCCCCCCceecCCCCCCccCcccCCcccCCccccCCCCCeEecCCchhhHHHH
Q 002000 691 ELSGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCSRINSVL 757 (983)
Q Consensus 691 e~~~C~IC~~~dfs~sgf~~~tLL~CDqCerayHv~CL~~~~m~~LkelP~g~WfC~~~C~~I~~~L 757 (983)
....|.+|+..+ ....|+.|+.|..+||..|+++ .+..+|.+.||| +.|..-+...
T Consensus 1107 ~~~~c~~cr~k~------~~~~m~lc~~c~~~~h~~C~rp----~~~~~~~~dW~C-~~c~~e~~~r 1162 (1404)
T KOG1245|consen 1107 VNALCKVCRRKK------QDEKMLLCDECLSGFHLFCLRP----ALSSVPPGDWMC-PSCRKEHRAR 1162 (1404)
T ss_pred chhhhhhhhhcc------cchhhhhhHhhhhhHHHHhhhh----hhccCCcCCccC-Cccchhhhhh
Confidence 345699999754 5678999999999999999998 688899999999 7998776533
No 105
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=94.86 E-value=0.013 Score=70.51 Aligned_cols=50 Identities=30% Similarity=1.016 Sum_probs=42.1
Q ss_pred CCcccccccCCCCCCCCCCCceecCC--CCCCccCcccCCcccCCccccCCCCCeEecCCchh
Q 002000 692 LSGCLLCRGCDFSKSGFGPRTILLCD--QCEREFHVGCLKKHKMADLRELPKGKWFCCMDCSR 752 (983)
Q Consensus 692 ~~~C~IC~~~dfs~sgf~~~tLL~CD--qCerayHv~CL~~~~m~~LkelP~g~WfC~~~C~~ 752 (983)
+++|.+|.. .-|+-+..|+.|| .|..+.|..|. .+-++|.|.||| ..|..
T Consensus 5 VGGCCVCSD----ErGWaeNPLVYCDG~nCsVAVHQaCY------GIvqVPtGpWfC-rKCes 56 (900)
T KOG0956|consen 5 VGGCCVCSD----ERGWAENPLVYCDGHNCSVAVHQACY------GIVQVPTGPWFC-RKCES 56 (900)
T ss_pred ccceeeecC----cCCCccCceeeecCCCceeeeehhcc------eeEecCCCchhh-hhhhh
Confidence 578999984 3456688999999 89999999998 566899999999 88854
No 106
>KOG3234 consensus Acetyltransferase, (GNAT) family [General function prediction only]
Probab=93.80 E-value=0.15 Score=52.41 Aligned_cols=59 Identities=10% Similarity=0.087 Sum_probs=47.8
Q ss_pred eeEEEeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEec---chhhhHHHHHhccCcEEc
Q 002000 874 EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLP---AAEEAESIWTDKFGFKKI 933 (983)
Q Consensus 874 ~~AEip~VAT~~~~RgqG~gr~Lv~~IE~~l~~lgV~~LvLp---A~~~A~~~w~~kfGF~~v 933 (983)
.-+++--|+|.|+||++|++..||+.+|+.....+.--+.|- .-.-|+.+|++ |||.+.
T Consensus 68 wh~HvTAltVap~~Rrl~la~~lm~~led~~d~~~a~fvDLfVr~sN~iAI~mYkk-LGY~~Y 129 (173)
T KOG3234|consen 68 WHGHVTALTVAPDYRRLGLAAKLMDTLEDVSDVDNAYFVDLFVRVSNQIAIDMYKK-LGYSVY 129 (173)
T ss_pred eeeEEEEEEechhHHHHHHHHHHHHHHHHHHHhhhhheeeeeeeccchhHHHHHHh-cCceEE
Confidence 457888899999999999999999999998877765544443 34559999999 999763
No 107
>KOG3235 consensus Subunit of the major N alpha-acetyltransferase [General function prediction only]
Probab=93.66 E-value=0.18 Score=51.88 Aligned_cols=81 Identities=14% Similarity=0.188 Sum_probs=62.9
Q ss_pred EEE-eCCeEEEEEEEEEeC-----CeeEEEeeeEeecCcccCChhHHHHHHHHHH-hhhcCccEEEecch---hhhHHHH
Q 002000 855 ILT-VNSSVVSAGILRVFG-----QEVAELPLVATSKINHGKGYFQLLFACIEKL-LSFLRVKSIVLPAA---EEAESIW 924 (983)
Q Consensus 855 VL~-~~~~vVsaA~lri~g-----~~~AEip~VAT~~~~RgqG~gr~Lv~~IE~~-l~~lgV~~LvLpA~---~~A~~~w 924 (983)
|.+ .+|+|||-.....+. ..-.+|-.+||...||+.|++++||..-.+. +-..+.+.+-|... ..|...|
T Consensus 45 VA~D~~gkiVGYvlAkmee~p~~~~~hGhItSlaV~rs~RrlGla~kLm~qa~rAm~E~~~A~yvsLHVR~SNraAl~LY 124 (193)
T KOG3235|consen 45 VAEDENGKIVGYVLAKMEEDPDDEPPHGHITSLAVKRSYRRLGLAQKLMNQASRAMVEVYEAKYVSLHVRKSNRAALHLY 124 (193)
T ss_pred EEEcCCCcEEEEeeeehhhcccCCCCCCeeEEeeehhhHHHhhHHHHHHHHHHHHHHHhhcceEEEEeeecccHHHHHhh
Confidence 446 578999987766554 2257899999999999999999999875553 45566777777655 4589999
Q ss_pred HhccCcEEcCH
Q 002000 925 TDKFGFKKIDP 935 (983)
Q Consensus 925 ~~kfGF~~v~~ 935 (983)
++.+||.+.+-
T Consensus 125 ~~tl~F~v~ev 135 (193)
T KOG3235|consen 125 KNTLGFVVCEV 135 (193)
T ss_pred hhccceEEeec
Confidence 99999998765
No 108
>PF13480 Acetyltransf_6: Acetyltransferase (GNAT) domain
Probab=93.61 E-value=0.41 Score=45.55 Aligned_cols=66 Identities=8% Similarity=-0.162 Sum_probs=57.3
Q ss_pred EEEEEEEeCCeEEEEEEEEEeCCeeEEEeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEecch
Q 002000 851 MYCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAA 917 (983)
Q Consensus 851 fy~~VL~~~~~vVsaA~lri~g~~~AEip~VAT~~~~RgqG~gr~Lv~~IE~~l~~lgV~~LvLpA~ 917 (983)
...++++.+|++||++.....+ +.+..-..+++++|++.+.|..|+..+.+.+.+.|++.+-+...
T Consensus 71 ~~l~~~~~~g~~va~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~l~~~~i~~a~~~g~~~~d~g~g 136 (142)
T PF13480_consen 71 LRLFVLYDGGEPVAFALGFRHG-GTLYYWYGGYDPEYRKYSPGRLLLWEAIRWAIERGLRYFDFGGG 136 (142)
T ss_pred EEEEEEEECCEEEEEEEEEEEC-CEEEEEEEEECHhhHhCCHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 4566778899999999776655 68889999999999999999999999999999999998876554
No 109
>TIGR03694 exosort_acyl putative PEP-CTERM/exosortase system-associated acyltransferase. Members of this protein family are restricted to bacterial species with the PEP-CTERM/exosortase system predicted to act in exopolysaccharide-associated protein targeting. PSI-BLAST and CDD reveal relationships to the acyltransferase family that includes N-acyl-L-homoserine lactone synthetase. Several members of this family may be found in a single genome. These proteins likely contribute to chemical modifications in exopolysaccharide and biofilm structural material production.
Probab=93.30 E-value=0.41 Score=52.27 Aligned_cols=120 Identities=15% Similarity=0.083 Sum_probs=80.2
Q ss_pred HHHHHHHHhhhhcCCCcccCCCCCCcccchhccccCCCceEecEEEEEEEe-CCeEEEEEEEEEe---------------
Q 002000 808 LLLSQAVAIFHDCFDPIVDSISGRDLIPSMVYGRNLRGQEFGGMYCAILTV-NSSVVSAGILRVF--------------- 871 (983)
Q Consensus 808 skLa~AL~If~EcFdPivD~~Sg~DLIp~MVy~~~~~r~df~Gfy~~VL~~-~~~vVsaA~lri~--------------- 871 (983)
..+..|..+=++-|. +. -|-++..+---+.++-..|-..-|.++... +|++||+++|...
T Consensus 17 ~~~~~~~~lR~~VFv---~e-~gw~~~~~~~~~~E~D~~D~~~~h~l~~~~~~g~vvG~~RLl~t~~~~p~~~~p~e~~~ 92 (241)
T TIGR03694 17 ELLEEAFRLRYQVYC---EE-LGFEPPSDYPDGLETDEYDAHSVHSLLRHRRTGTFVGCVRLVLPNSSDPDQPFPFEKHC 92 (241)
T ss_pred HHHHHHHHHHHHHHH---Hh-cCCCCCCCCCCCCcCCCCCCCCcEEEEEECCCCCEEEEEEEeccccccccccccHHHHh
Confidence 345666666666662 11 111211100013344445545556555543 5899999999642
Q ss_pred ---------------CCeeEEEeeeEeecCcccC--------C--------------------hhHHHHHHHHHHhhhcC
Q 002000 872 ---------------GQEVAELPLVATSKINHGK--------G--------------------YFQLLFACIEKLLSFLR 908 (983)
Q Consensus 872 ---------------g~~~AEip~VAT~~~~Rgq--------G--------------------~gr~Lv~~IE~~l~~lg 908 (983)
..+++|+-++|+.++||+. | +...|+.++-+.+...|
T Consensus 93 ~~~~~~~~~~~~~~~~~~i~E~SRf~V~~~~r~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~a~~~G 172 (241)
T TIGR03694 93 SHSLDGLFLDPRRLPRSRIAEVSRLAVSKDFRRRKGEKLKPSGVGVIETEAPFSESERRRFPHIPLGLYLGLIALSSANG 172 (241)
T ss_pred ccccchhhcCccccCCCceEEeehheECHhHhCCcccccccccccccccccccchhhcccCchHHHHHHHHHHHHHHHCC
Confidence 1369999999999999974 2 45679999999999999
Q ss_pred ccEEEecchhhhHHHHHhccCcEE
Q 002000 909 VKSIVLPAAEEAESIWTDKFGFKK 932 (983)
Q Consensus 909 V~~LvLpA~~~A~~~w~~kfGF~~ 932 (983)
+++++.-+.+.....+.+ +||..
T Consensus 173 i~~~~~v~~~~l~r~l~r-~G~~~ 195 (241)
T TIGR03694 173 ITHWYAIMEPRLARLLSR-FGIQF 195 (241)
T ss_pred CcEEEEEeCHHHHHHHHH-hCCce
Confidence 999999888887877765 88643
No 110
>COG4552 Eis Predicted acetyltransferase involved in intracellular survival and related acetyltransferases [General function prediction only]
Probab=93.28 E-value=0.1 Score=59.56 Aligned_cols=85 Identities=18% Similarity=0.200 Sum_probs=66.5
Q ss_pred CCceEecEEEEEEEeCCeEEEEEEEEEe------CC---eeEEEeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEe
Q 002000 844 RGQEFGGMYCAILTVNSSVVSAGILRVF------GQ---EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVL 914 (983)
Q Consensus 844 ~r~df~Gfy~~VL~~~~~vVsaA~lri~------g~---~~AEip~VAT~~~~RgqG~gr~Lv~~IE~~l~~lgV~~LvL 914 (983)
+.+++.++|++ +.+.++++ +|++. |. ..|-|-.||+.|+|||+|+-|+|+....+..++.|+.-.+|
T Consensus 34 kil~~~n~~vi--~~nqkl~s--~L~i~~f~~~f~~q~l~t~GIa~Vas~P~~R~~G~~~~Ll~~sLre~~~kG~p~s~L 109 (389)
T COG4552 34 KILAEPNSYVI--YMNQKLAS--RLHIPPFIFWFGNQVLPTAGIAGVASAPTYRRRGALRALLAHSLREIARKGYPVSAL 109 (389)
T ss_pred hhccCCcceEE--eehhhhhh--cccccchheeeCCeeeeccceEEEEechhhccCcHHHHHHHHHHHHHHHcCCeeEEe
Confidence 34567777765 77777755 44443 33 35667889999999999999999999999999999998887
Q ss_pred cchhhhHHHHHhccCcEEcCH
Q 002000 915 PAAEEAESIWTDKFGFKKIDP 935 (983)
Q Consensus 915 pA~~~A~~~w~~kfGF~~v~~ 935 (983)
... ..+||.+ |||..-+.
T Consensus 110 ~P~--s~~iYrK-fGye~asn 127 (389)
T COG4552 110 HPF--SGGIYRK-FGYEYASN 127 (389)
T ss_pred ccC--chhhHhh-ccccccce
Confidence 655 3678988 99986654
No 111
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=92.88 E-value=0.027 Score=74.25 Aligned_cols=48 Identities=40% Similarity=0.963 Sum_probs=41.1
Q ss_pred cccccccccccCC---CeeccCCCCCccCcccCC--CCCCCCCCccccccccc
Q 002000 602 DNDDLCTICADGG---NLLPCDGCPRAFHKECAS--LSSIPQGDWYCKYCQNM 649 (983)
Q Consensus 602 ~ndd~C~VC~dgG---~Ll~CD~CprafH~~Cl~--l~~vP~g~W~C~~C~~~ 649 (983)
...-.|.+|...+ .++.|+.|...||..|+. +..+|.|+|+|+.|+..
T Consensus 1106 ~~~~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e 1158 (1404)
T KOG1245|consen 1106 AVNALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRKE 1158 (1404)
T ss_pred cchhhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccchh
Confidence 4556799999543 589999999999999995 78999999999999864
No 112
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=92.82 E-value=0.04 Score=64.28 Aligned_cols=47 Identities=32% Similarity=0.839 Sum_probs=37.3
Q ss_pred CcccccccCCCCCCCCCCCceecCCCCCCccCcccCCcccCCccccCCCCCeEecCCc
Q 002000 693 SGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDC 750 (983)
Q Consensus 693 ~~C~IC~~~dfs~sgf~~~tLL~CDqCerayHv~CL~~~~m~~LkelP~g~WfC~~~C 750 (983)
+.|++|.+.+.. +-.+++.||.|+-+.|..|. ++.-+|+|.|+| ..|
T Consensus 194 ~~C~~c~~t~~e----N~naiVfCdgC~i~VHq~CY------GI~f~peG~WlC-rkC 240 (669)
T COG5141 194 DICTKCTSTHNE----NSNAIVFCDGCEICVHQSCY------GIQFLPEGFWLC-RKC 240 (669)
T ss_pred hhhHhccccccC----CcceEEEecCcchhhhhhcc------cceecCcchhhh-hhh
Confidence 348899876633 34589999999999999998 455679999999 666
No 113
>PF06852 DUF1248: Protein of unknown function (DUF1248); InterPro: IPR009658 This entry represents a conserved region within a number of proteins of unknown function that seem to be specific to Caenorhabditis elegans. Note that some proteins in the entry contain more than one copy of this region.
Probab=92.69 E-value=0.61 Score=49.14 Aligned_cols=82 Identities=18% Similarity=0.196 Sum_probs=59.6
Q ss_pred EEEEEEeCCeEEEEEEEEEeC-------CeeEEEeeeEeecCcccCChhHHHHHHHHH-HhhhcCccEEEecchhhhHHH
Q 002000 852 YCAILTVNSSVVSAGILRVFG-------QEVAELPLVATSKINHGKGYFQLLFACIEK-LLSFLRVKSIVLPAAEEAESI 923 (983)
Q Consensus 852 y~~VL~~~~~vVsaA~lri~g-------~~~AEip~VAT~~~~RgqG~gr~Lv~~IE~-~l~~lgV~~LvLpA~~~A~~~ 923 (983)
|.+++.--+.+|+++++-.+. ..+--+.+.=+.|+|||+|+++ |+..+.. .+.. +=...++-+...+..+
T Consensus 48 ~~~~~KgT~~via~~~~~~~~~l~~~~d~pl~~~G~~w~~p~yRg~~~~k-l~~~~~~~~~~~-~~~N~~~~~~~~~~~~ 125 (181)
T PF06852_consen 48 VLTCLKGTDRVIATVHLIRFDPLNPSPDKPLQFIGFFWIDPEYRGKGIMK-LQDDICMDELDS-VDDNSVAQGNVKMSNF 125 (181)
T ss_pred EEEEEcCCCcEEEEEEEEEeccCCCCCCCCeEEEeeeeeCCcccCcchHH-HHHHHHHHHhcc-CCCceeeecCHHHHHH
Confidence 444444446788888775433 2377778888999999999996 5555554 4444 3355677788899999
Q ss_pred HHhccCcEEcCH
Q 002000 924 WTDKFGFKKIDP 935 (983)
Q Consensus 924 w~~kfGF~~v~~ 935 (983)
|.+-|||..++.
T Consensus 126 w~k~~G~~~~~h 137 (181)
T PF06852_consen 126 WHKMFGFDDYGH 137 (181)
T ss_pred HHHHhCCCCCcc
Confidence 999999988887
No 114
>smart00258 SAND SAND domain.
Probab=92.26 E-value=0.099 Score=47.39 Aligned_cols=49 Identities=24% Similarity=0.391 Sum_probs=41.0
Q ss_pred cCeEEeeCCCCCCceecCcccccccccc-ccCCccccccccCCccHHHHHHH
Q 002000 261 DGGILCSCSLCNGCRVIPPSKFEIHACK-QYRRASQYICFENGKSLLEVLRA 311 (983)
Q Consensus 261 ~~GilC~C~~C~~~~v~s~~~FE~HAGs-~~~~p~~~I~LenG~sL~~vl~a 311 (983)
.+|+.+-|..+++ +-+||.+||.|||. ++|.=-..|.. ||.+|+.+|+.
T Consensus 20 ~~G~~~kCI~~~~-~~~TP~eFe~~~g~~~~K~WK~sIR~-~g~~Lr~L~~~ 69 (73)
T smart00258 20 KCGISVKCIQYED-KWFTPKEFEIEGGKGKSKDWKRSIRC-GGSSLRTLMEN 69 (73)
T ss_pred hcCcccCCccCCC-EEEChHHHHhhcCCcccCCcchheeE-CCccHHHHHHc
Confidence 4589999999987 99999999999994 67776777765 68999998875
No 115
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=91.42 E-value=0.16 Score=59.68 Aligned_cols=64 Identities=20% Similarity=0.289 Sum_probs=49.9
Q ss_pred EEEeCCeeEEEeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEecchhhhHHHHHhccCcEEcCH
Q 002000 868 LRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKIDP 935 (983)
Q Consensus 868 lri~g~~~AEip~VAT~~~~RgqG~gr~Lv~~IE~~l~~lgV~~LvLpA~~~A~~~w~~kfGF~~v~~ 935 (983)
|||+|..+.. .. ....+|.||||+.||+..|+.|++-|..++.+-+-..+..-|.+ |||...+.
T Consensus 446 lhvyg~~vpi-g~--~~~~~QH~G~G~~L~~~AE~ia~ee~~~ki~viSgiG~ReYy~k-~GY~~~gp 509 (515)
T COG1243 446 LHVYGSEVPI-GK--REDEWQHRGYGRELLEEAERIAREEGAKKILVISGIGVREYYRK-LGYELDGP 509 (515)
T ss_pred hhcccccccc-cc--CcchhhcccHHHHHHHHHHHHHHhhccccEEEEecccHHHHHHH-hCccccCC
Confidence 4566643221 12 25789999999999999999999999999888777777777776 99987664
No 116
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=90.08 E-value=0.097 Score=61.65 Aligned_cols=44 Identities=32% Similarity=0.955 Sum_probs=35.2
Q ss_pred cccccccC-----CCeeccCCCCCccCcccCC------CCCCCCCCccccccccc
Q 002000 606 LCTICADG-----GNLLPCDGCPRAFHKECAS------LSSIPQGDWYCKYCQNM 649 (983)
Q Consensus 606 ~C~VC~dg-----G~Ll~CD~CprafH~~Cl~------l~~vP~g~W~C~~C~~~ 649 (983)
.|.+|..+ ..++.|++|..-||+.|+. +..-+...|||..|...
T Consensus 170 qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~ 224 (464)
T KOG4323|consen 170 QCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRG 224 (464)
T ss_pred eeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccc
Confidence 38898843 4699999999999999994 22336789999999864
No 117
>PF00765 Autoind_synth: Autoinducer synthetase; InterPro: IPR001690 Bacterial species have many methods of controlling gene expression and cell growth. Regulation of gene expression in response to changes in cell density is termed quorum sensing [, ]. Quorum-sensing bacteria produce, release and respond to hormone-like molecules (autoinducers) that accumulate in the external environment as the cell population grows. Once a threshold of these molecules is reached, a signal transduction cascade is triggered that ultimately leads to behavioural changes in the bacterium []. Autoinducers are thus clearly important mediators of molecular communication. Conjugal transfer of Agrobacterium octopine-type Ti plasmids is activated by octopine, a metabolite released from plant tumours []. Octopine causes conjugal donors to secrete a pheromone, Agrobacterium autoinducer (AAI), and exogenous AAI further stimulates conjugation. The putative AAI synthase and an AAI-responsive transcriptional regulator have been found to be encoded by the Ti plasmid traI and traR genes, respectively. TraR and TraI are similar to the LuxR and LuxI regulatory proteins of Vibrio fischeri, and AAI is similar in structure to the diffusable V. fischeri autoinducer, the inducing ligand of LuxR. TraR activates target genes in the presence of AAI and also activates traR and traI themselves, creating two positive-feedback loops. TraR-AAI-mediated activation in wild-type Agrobacterium strains is enhanced by culturing on solid media, suggesting a possible role in cell density sensing []. Production of light by the marine bacterium V. fischeri and by recombinant hosts containing cloned lux genes is controlled by the density of the culture []. Density-dependent regulation of lux gene expression has been shown to require a locus consisting of the luxR and luxI genes. In these and other Gram-negative bacteria, N-(3-oxohexanoyl)-L-homoserine lactone (OHHL) acts as the autoinducer by binding to transcriptional regulatory proteins and activating them []. OHHL and related molecules, such as N-butanoyl- (BHL), N-hexanoyl- (HHL) and N-oxododecanoyl- (PAI) homoserine lactones, are produced by a family of proteins that share a high level of sequence similarity. Proteins which currently members of this family include: luxI from V. fischeri. ahyI and asaI from Aeromonas species, which synthesize BHL and whose targets are ahyR and asaR respectively. carI from Erwinia carotovora. The target of OHHL is carR which activates genes involved in the biosynthesis of carbapenem antibiotics. eagI from Enterobacter agglomerans. The target of OHHL is not yet known. esaI from Erwinia stewartii. expI from Erwinia carotovora. lasI from Pseudomonas aeruginosa, which synthesizes PAI and whose target is lasR which activates the transcription of the elastase gene. rhlI (or vsmI) from P. aeruginosa, which synthesizes BHL and HHL and whose target is rhlR. swrI from Serratia liquefaciens, which synthesizes BHL. yenI from Yersinia enterocolitica. ; GO: 0007165 signal transduction; PDB: 3P2H_A 3P2F_A 1KZF_A 1K4J_A 1RO5_A.
Probab=90.02 E-value=1.8 Score=45.59 Aligned_cols=82 Identities=17% Similarity=0.110 Sum_probs=63.3
Q ss_pred ecEEEEEEEeCCeEEEEEEEEEeC---------------------CeeEEEeeeEeecCccc------CChhHHHHHHHH
Q 002000 849 GGMYCAILTVNSSVVSAGILRVFG---------------------QEVAELPLVATSKINHG------KGYFQLLFACIE 901 (983)
Q Consensus 849 ~Gfy~~VL~~~~~vVsaA~lri~g---------------------~~~AEip~VAT~~~~Rg------qG~gr~Lv~~IE 901 (983)
.-.|.+++. +|+++|+++|.... .+++|+=++++.++.++ .-+...|+.++-
T Consensus 44 ~~~ylv~~~-~g~v~g~~RLlptt~p~ML~~~F~~ll~~~~~p~~~~vwE~SRf~v~~~~~~~~~~~~~~~~~~L~~~~~ 122 (182)
T PF00765_consen 44 DAVYLVALD-DGRVVGCARLLPTTGPYMLSDVFPHLLPDGPAPRSPDVWELSRFCVDPDRRRSRAGSRSPVTMELLLGMV 122 (182)
T ss_dssp T-EEEEEEE-TTEEEEEEEEEETTS--HHHHCTGGGHTTS---SSTTEEEEEEEEE-HCCCHHCHSCC-THHHHHHHHHH
T ss_pred CCeEEEEEE-CCEEEEEeeeccCCCcchhhhHHHHHhCCCCCCCCCcceeeeEEEEcccccccccccccHHHHHHHHHHH
Confidence 446777654 59999999997543 57999999999988532 236789999999
Q ss_pred HHhhhcCccEEEecchhhhHHHHHhccCcEE
Q 002000 902 KLLSFLRVKSIVLPAAEEAESIWTDKFGFKK 932 (983)
Q Consensus 902 ~~l~~lgV~~LvLpA~~~A~~~w~~kfGF~~ 932 (983)
+.+.+.|++.++.-+..-.+.++.+ +||..
T Consensus 123 e~a~~~gi~~~v~V~~~~~~r~l~r-~G~~~ 152 (182)
T PF00765_consen 123 EFALSNGIRHIVGVVDPAMERILRR-AGWPV 152 (182)
T ss_dssp HHHHCTT-SEEEEEEEHHHHHHHHH-CT-EE
T ss_pred HHHHHCCCCEEEEEEChHHHHHHHH-cCCce
Confidence 9999999999998888777777777 99874
No 118
>PRK13834 putative autoinducer synthesis protein; Provisional
Probab=89.84 E-value=1.8 Score=46.39 Aligned_cols=119 Identities=18% Similarity=0.097 Sum_probs=79.2
Q ss_pred HHHHHHHHHhhhhcCCCcccCCCCCCcccchhccccCCCceE-ecEEEEEEEeCCeEEEEEEEEEe--------------
Q 002000 807 RLLLSQAVAIFHDCFDPIVDSISGRDLIPSMVYGRNLRGQEF-GGMYCAILTVNSSVVSAGILRVF-------------- 871 (983)
Q Consensus 807 ~skLa~AL~If~EcFdPivD~~Sg~DLIp~MVy~~~~~r~df-~Gfy~~VL~~~~~vVsaA~lri~-------------- 871 (983)
...+.++...=|+.|. + +=|=++ +. --|.++-.+|- .-.|.+....+|++||+++|--.
T Consensus 15 ~~~l~~~~rLR~~VF~---~-elgW~~-~~-~~g~E~D~yD~~~~~yll~~~~~g~vvG~~RLlptt~p~ml~~~fp~l~ 88 (207)
T PRK13834 15 ASLLKQMHRLRARVFG---G-RLGWDV-SI-TDGEERDQFDDLKPTYILAISDSGRVAGCARLLPAIGPTMLAQVFPQLL 88 (207)
T ss_pred HHHHHHHHHHHHHHhc---c-ccCCCC-CC-CCCcCccCCCCCCCEEEEEEeCCCeEEEEEecccCCCcchhhhhcHHhc
Confidence 3456777777777773 1 112222 10 12333444443 34566666678899999998321
Q ss_pred -------CCeeEEEeeeEeecCcc---cCC----hhHHHHHHHHHHhhhcCccEEEecchhhhHHHHHhccCcEE
Q 002000 872 -------GQEVAELPLVATSKINH---GKG----YFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKK 932 (983)
Q Consensus 872 -------g~~~AEip~VAT~~~~R---gqG----~gr~Lv~~IE~~l~~lgV~~LvLpA~~~A~~~w~~kfGF~~ 932 (983)
..+++|+-++|++++++ +.+ +...|+.++-+.+...|+++++.-+.+-.+..+.+ +||..
T Consensus 89 ~~~~~~~~~~v~E~SRf~V~~~~~~~~~~~~~~~~~~~L~~~~~~~a~~~Gi~~~~~v~~~~~~r~l~r-~G~~~ 162 (207)
T PRK13834 89 PAGRLNAHPAMIESSRFCVDTALAEGRGGGQLHEATLTMFAGIIEWSMANGYTEIVTATDLRFERILAR-AGWPM 162 (207)
T ss_pred CCCCCCCCCCEEEEeeeEEcccccccccccccCHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHH-cCCCe
Confidence 15799999999999853 222 56789999999999999999998777766776755 88653
No 119
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=89.29 E-value=0.18 Score=61.65 Aligned_cols=47 Identities=32% Similarity=0.873 Sum_probs=39.6
Q ss_pred cccccccCCCCCCCCCCCceecCCCCCCccCcccCCcccCCccccCCCCCeEecCCch
Q 002000 694 GCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCS 751 (983)
Q Consensus 694 ~C~IC~~~dfs~sgf~~~tLL~CDqCerayHv~CL~~~~m~~LkelP~g~WfC~~~C~ 751 (983)
.|-+|..+|- .....|++||.|.-..|..|. ++.++|.+.|.| ..|.
T Consensus 273 iCDvCrspD~----e~~neMVfCd~Cn~cVHqaCy------GIle~p~gpWlC-r~Ca 319 (893)
T KOG0954|consen 273 ICDVCRSPDS----EEANEMVFCDKCNICVHQACY------GILEVPEGPWLC-RTCA 319 (893)
T ss_pred eeceecCCCc----cccceeEEeccchhHHHHhhh------ceeecCCCCeee-hhcc
Confidence 4999998762 245689999999999999998 567899999999 7774
No 120
>COG3981 Predicted acetyltransferase [General function prediction only]
Probab=88.93 E-value=0.7 Score=48.24 Aligned_cols=69 Identities=14% Similarity=0.175 Sum_probs=54.2
Q ss_pred ecEEEEEEEeCCeEEEEEEEEEeCCe-----eEEEeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEecchhh
Q 002000 849 GGMYCAILTVNSSVVSAGILRVFGQE-----VAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEE 919 (983)
Q Consensus 849 ~Gfy~~VL~~~~~vVsaA~lri~g~~-----~AEip~VAT~~~~RgqG~gr~Lv~~IE~~l~~lgV~~LvLpA~~~ 919 (983)
.-.|-+|-+ ++++||.-.||-.=.+ ..+|. -+|+|..||+||++.++.-..+.++.+|++.+.+-+..+
T Consensus 68 ~~~y~~v~~-d~~ivG~i~lRh~Ln~~ll~~gGHIG-Y~VrPseR~KGYA~emLkl~L~~ar~lgi~~Vlvtcd~d 141 (174)
T COG3981 68 ASTYWAVDE-DGQIVGFINLRHQLNDFLLEEGGHIG-YSVRPSERRKGYAKEMLKLALEKARELGIKKVLVTCDKD 141 (174)
T ss_pred ceeEEEEec-CCcEEEEEEeeeecchHHHhcCCccc-ceeChhhhccCHHHHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 345666656 8999999999864322 12221 358999999999999999999999999999999887754
No 121
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=87.55 E-value=0.094 Score=41.27 Aligned_cols=32 Identities=38% Similarity=1.141 Sum_probs=16.8
Q ss_pred ceecCCCCCCccCcccCCcccCCccccCCCC-CeEecCCc
Q 002000 712 TILLCDQCEREFHVGCLKKHKMADLRELPKG-KWFCCMDC 750 (983)
Q Consensus 712 tLL~CDqCerayHv~CL~~~~m~~LkelP~g-~WfC~~~C 750 (983)
.||.|+.|.-..|..|.. +...|.+ .|+| .-|
T Consensus 3 ~ll~C~~C~v~VH~~CYG------v~~~~~~~~W~C-~~C 35 (36)
T PF13831_consen 3 PLLFCDNCNVAVHQSCYG------VSEVPDGDDWLC-DRC 35 (36)
T ss_dssp EEEE-SSS--EEEHHHHT-------SS--SS------HHH
T ss_pred ceEEeCCCCCcCChhhCC------cccCCCCCcEEC-CcC
Confidence 689999999999999984 3344444 7999 444
No 122
>cd04264 DUF619-NAGS DUF619 domain of various N-acetylglutamate Synthases of the fungal arginine-biosynthetic pathway and urea cycle found in humans and fish. DUF619-NAGS: This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=86.07 E-value=1.4 Score=42.13 Aligned_cols=48 Identities=21% Similarity=0.234 Sum_probs=41.3
Q ss_pred EeCCeEEEEEEEEEeC--CeeEEEeeeEeecCcccCChhHHHHHHHHHHh
Q 002000 857 TVNSSVVSAGILRVFG--QEVAELPLVATSKINHGKGYFQLLFACIEKLL 904 (983)
Q Consensus 857 ~~~~~vVsaA~lri~g--~~~AEip~VAT~~~~RgqG~gr~Lv~~IE~~l 904 (983)
+.++...++|.+..-+ .+++-|-.+|+.+..||+|+++.|+++|-+.-
T Consensus 14 y~~e~y~~~aIvt~~~~~~~~~yLdKfaV~~~~~g~gvad~vf~~i~~d~ 63 (99)
T cd04264 14 YLSEGYNAAAIVTYEGVNNGVPYLDKFAVSSSAQGEGTSDALWRRLRRDF 63 (99)
T ss_pred EEeCCceEEEEEeccCCCCCceEEEEEEEchhhhhcChHHHHHHHHHhhC
Confidence 5567788888886654 58999999999999999999999999998874
No 123
>PF01342 SAND: SAND domain; InterPro: IPR000770 The SAND domain (named after Sp100, AIRE-1, NucP41/75, DEAF-1) is a conserved ~80 residue region found in a number of nuclear proteins, many of which function in chromatin-dependent transcriptional control. These include proteins linked to various human diseases, such as the Sp100 (Speckled protein 100 kDa), NUDR (Nuclear DEAF-1 related), GMEB (Glucocorticoid Modulatory Element Binding) proteins and AIRE-1 (Autoimmune regulator 1) proteins. Proteins containing the SAND domain have a modular structure; the SAND domain can be associated with a number of other modules, including the bromodomain, the PHD finger and the MYND finger. Because no SAND domain has been found in yeast, it is thought that the SAND domain could be restricted to animal phyla. Many SAND domain-containing proteins, including NUDR, DEAF-1 (Deformed epidermal autoregulatory factor-1) and GMEB, have been shown to bind DNA sequences specifically. The SAND domain has been proposed to mediate the DNA binding activity of these proteins [, ]. The resolution of the 3D structure of the SAND domain from Sp100b has revealed that it consists of a novel alpha/beta fold. The SAND domain adopts a compact fold consisting of a strongly twisted, five-stranded antiparallel beta-sheet with four alpha-helices packing against one side of the beta-sheet. The opposite side of the beta-sheet is solvent exposed. The beta-sheet and alpha-helical parts of the structure form two distinct regions. Multiple hydrophobic residues pack between these regions to form a structural core. A conserved KDWK sequence motif is found within the alpha-helical, positively charged surface patch. The DNA binding surface has been mapped to the alpha-helical region encompassing the KDWK motif [].; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 1OQJ_B 1UFN_A 1H5P_A.
Probab=84.73 E-value=0.15 Score=47.11 Aligned_cols=55 Identities=27% Similarity=0.453 Sum_probs=38.2
Q ss_pred eeEEEe-----cCeEEeeCCCCCCceecCccccccccccccC-CccccccccCCccHHHHHHH
Q 002000 255 LRGIIR-----DGGILCSCSLCNGCRVIPPSKFEIHACKQYR-RASQYICFENGKSLLEVLRA 311 (983)
Q Consensus 255 L~G~I~-----~~GilC~C~~C~~~~v~s~~~FE~HAGs~~~-~p~~~I~LenG~sL~~vl~a 311 (983)
++|++- ..|+...|-.+. .+-+||.+||.|||.... +=-..|.. +|.+|..+|++
T Consensus 18 ~~G~L~~~k~~~~g~~~kCI~~~-g~~~TP~eFE~~~G~~~sK~WK~SIr~-~g~~L~~li~~ 78 (82)
T PF01342_consen 18 VKGTLYKKKFVKQGICGKCIQCE-GRWFTPSEFERHGGKGSSKDWKRSIRC-GGEPLGKLIEK 78 (82)
T ss_dssp EEEEEEHHHH-TTGTTSS-EEET-TEEE-HHHHHHHHTTCTCS-HHHHSEE-TTEEHHHHHHT
T ss_pred eEEEEEHHHhhcccccCceEeeC-CcEECHHHHHhhcCcccCCCCCccEEE-CCEEHHHHHhh
Confidence 466665 345555566666 789999999999996543 34456777 89999988764
No 124
>cd04265 DUF619-NAGS-U DUF619 domain of various N-acetylglutamate Synthases (NAGS) of the urea (U) cycle of humans and fish. This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=78.16 E-value=3.8 Score=39.27 Aligned_cols=48 Identities=19% Similarity=0.165 Sum_probs=38.3
Q ss_pred EeCCeEEEEEEEEEeC-CeeEEEeeeEeecCcccCChhHHHHHHHHHHh
Q 002000 857 TVNSSVVSAGILRVFG-QEVAELPLVATSKINHGKGYFQLLFACIEKLL 904 (983)
Q Consensus 857 ~~~~~vVsaA~lri~g-~~~AEip~VAT~~~~RgqG~gr~Lv~~IE~~l 904 (983)
+.++..=++|.+..-. .+++-|-.+|+.+..||+|+++.|+++|-+..
T Consensus 15 y~~e~y~~~aivt~~~~~~~~yLdKfaV~~~~~g~gv~d~vf~~i~~d~ 63 (99)
T cd04265 15 YLSEGYNAAAIVTNEEVDGVPYLDKFAVSSSAQGEGTGEALWRRLRRDF 63 (99)
T ss_pred EEeCCCcEEEEEeccCCCCceEEEEEEEchhhhhcChHHHHHHHHHhhC
Confidence 4445555666665433 47999999999999999999999999998874
No 125
>TIGR03019 pepcterm_femAB FemAB-related protein, PEP-CTERM system-associated. Members of this protein family are found always as part of extended exopolysaccharide biosynthesis loci in bacteria. In nearly every case, these loci contain determinants for the processing of the PEP-CTERM proposed C-terminal protein sorting signal. This family shows remote, local sequence similarity to the FemAB protein family (see pfam02388), whose members
Probab=77.08 E-value=7.1 Score=44.05 Aligned_cols=80 Identities=9% Similarity=0.036 Sum_probs=62.4
Q ss_pred EEEE-eCCeEEEEEEEEEeCCeeEEEeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEecchhh--hHHHHHhccCc
Q 002000 854 AILT-VNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEE--AESIWTDKFGF 930 (983)
Q Consensus 854 ~VL~-~~~~vVsaA~lri~g~~~AEip~VAT~~~~RgqG~gr~Lv~~IE~~l~~lgV~~LvLpA~~~--A~~~w~~kfGF 930 (983)
++++ .+|++|+++.+..++ +.+.....|+.+++++.+-+-.|+-.+.+.+.+.|++.+-+..... -.-.|+++|||
T Consensus 198 ~~a~~~~g~~va~~l~~~~~-~~~~~~~~g~~~~~~~~~~~~lL~w~~i~~a~~~G~~~fDfG~s~~~~G~~~FK~~~G~ 276 (330)
T TIGR03019 198 LTVRLGDGVVASAVLSFYFR-DEVLPYYAGGLREARDVAANDLMYWELMRRACERGLRVFDFGRSKRGTGPFKFKKNWGF 276 (330)
T ss_pred EEEEeCCCCEEEEEEEEEeC-CEEEEEeccChHHHHhhChHHHHHHHHHHHHHHCCCcEEEcCCCCCCCccHHHHhcCCC
Confidence 4456 688999888876665 4455568889999999999999999999999999999999876432 23346677899
Q ss_pred EEcC
Q 002000 931 KKID 934 (983)
Q Consensus 931 ~~v~ 934 (983)
++++
T Consensus 277 ~~~~ 280 (330)
T TIGR03019 277 EPQP 280 (330)
T ss_pred eecc
Confidence 8654
No 126
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=76.58 E-value=2.7 Score=49.68 Aligned_cols=56 Identities=21% Similarity=0.522 Sum_probs=36.6
Q ss_pred ccccccCCCCCCCCCCCceecCCCCCCccCcccCCcccCCc-cc--cC----CCCCeEecCCchhhH
Q 002000 695 CLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMAD-LR--EL----PKGKWFCCMDCSRIN 754 (983)
Q Consensus 695 C~IC~~~dfs~sgf~~~tLL~CDqCerayHv~CL~~~~m~~-Lk--el----P~g~WfC~~~C~~I~ 754 (983)
|.+|++.|+.. ++-..|.||.|..|-|++|.-.+.+.. .. .- .+..++| ..|.+..
T Consensus 131 C~iC~kfD~~~---n~~~Wi~Cd~CgH~cH~dCALr~~~i~~G~s~~g~~g~~d~~f~C-~~C~~~s 193 (446)
T PF07227_consen 131 CCICSKFDDNK---NTCSWIGCDVCGHWCHLDCALRHELIGTGPSVKGSIGTLDMQFHC-RACGKTS 193 (446)
T ss_pred ccccCCcccCC---CCeeEEeccCCCceehhhhhcccccccCCccCCCCCccCceEEEc-cCCCChh
Confidence 88898876553 334579999999999999965544321 11 11 1235666 8997654
No 127
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=75.06 E-value=1 Score=42.17 Aligned_cols=47 Identities=32% Similarity=0.686 Sum_probs=31.1
Q ss_pred cccccccccc-----------CCC---eeccCCCCCccCcccCC-CCCCCCCCcccccccccc
Q 002000 603 NDDLCTICAD-----------GGN---LLPCDGCPRAFHKECAS-LSSIPQGDWYCKYCQNMF 650 (983)
Q Consensus 603 ndd~C~VC~d-----------gG~---Ll~CD~CprafH~~Cl~-l~~vP~g~W~C~~C~~~~ 650 (983)
+||.|.||.. +|+ +++ ..|...||..|+- +.+-+...-.||.|+..+
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~-g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w 81 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVW-GKCSHNFHMHCILKWLSTQSSKGQCPMCRQPW 81 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceee-ccCccHHHHHHHHHHHccccCCCCCCCcCCee
Confidence 4677777763 333 333 3499999999994 333334456999999764
No 128
>PF02474 NodA: Nodulation protein A (NodA); InterPro: IPR003484 Rhizobial nodulation (Nod) factors are signalling molecules secreted by root-nodulating rhizobia in response to flavanoids excreted by the host plant. They induce various symbiotic responses on the roots of the leguminous host plant at low concentrations, and are required for successful infection. Rhizobial Nod factors are lipo-chitooligosaccharides carrying various substituents which are important determinants of host specificity []. NodA is an N-acyl transferase which specifies the transfer of an acyl chain to the oligosaccharide backbone of Nod factor. Allelic variation of the nodA gene can contribute to the determination of host range [].; GO: 0016746 transferase activity, transferring acyl groups
Probab=74.38 E-value=4.7 Score=42.38 Aligned_cols=51 Identities=20% Similarity=0.050 Sum_probs=43.1
Q ss_pred eEEEeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEecchhhhHHHHHh
Q 002000 875 VAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTD 926 (983)
Q Consensus 875 ~AEip~VAT~~~~RgqG~gr~Lv~~IE~~l~~lgV~~LvLpA~~~A~~~w~~ 926 (983)
+||+.+.||+++.+|.|++..+ ..+--.|+.|||+--|--........+++
T Consensus 85 VaElGLygVRpDLEGlGi~hs~-r~m~PvLq~LgVPF~FGtVR~al~~Hv~R 135 (196)
T PF02474_consen 85 VAELGLYGVRPDLEGLGISHSM-RVMYPVLQELGVPFGFGTVRHALRNHVER 135 (196)
T ss_pred EEEEEEEEeeccccccccchhh-hhhhhHHHhcCCCeecccchHHHHHHHHH
Confidence 8999999999999999999976 68888999999997776666655666655
No 129
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=74.22 E-value=1.4 Score=42.07 Aligned_cols=32 Identities=25% Similarity=0.730 Sum_probs=26.7
Q ss_pred cccccccCCCCCCCCCCCceecCCC--CCCccCcccCCcccC
Q 002000 694 GCLLCRGCDFSKSGFGPRTILLCDQ--CEREFHVGCLKKHKM 733 (983)
Q Consensus 694 ~C~IC~~~dfs~sgf~~~tLL~CDq--CerayHv~CL~~~~m 733 (983)
.|.+|+.. .+..+.|.. |.++||+.|....+.
T Consensus 57 ~C~iC~~~--------~G~~i~C~~~~C~~~fH~~CA~~~g~ 90 (110)
T PF13832_consen 57 KCSICGKS--------GGACIKCSHPGCSTAFHPTCARKAGL 90 (110)
T ss_pred cCcCCCCC--------CceeEEcCCCCCCcCCCHHHHHHCCC
Confidence 49999974 357999998 999999999877654
No 130
>PF07897 DUF1675: Protein of unknown function (DUF1675); InterPro: IPR012463 The members of this family are sequences derived from hypothetical plant proteins of unknown function. One member of this family (Q9SFV5 from SWISSPROT) is annotated as a putative RNA-binding protein, but no evidence was found to support this.
Probab=73.07 E-value=5 Score=45.17 Aligned_cols=70 Identities=16% Similarity=0.236 Sum_probs=44.7
Q ss_pred CCcchhhhhhcCCcCCceEEEecCCcccccceeEEEec------CeEEeeCCCCCCceecCccccccccccc-cCCcccc
Q 002000 224 KPMTVTELFETGLLDGVSVVYMGGIKFQASGLRGIIRD------GGILCSCSLCNGCRVIPPSKFEIHACKQ-YRRASQY 296 (983)
Q Consensus 224 ~p~~vk~Ll~tg~leg~~V~Y~~~~~~~~~~L~G~I~~------~GilC~C~~C~~~~v~s~~~FE~HAGs~-~~~p~~~ 296 (983)
.+++...-..+.+++.+|-++-.+..-++....|++-. .-|.|-|- -..|||.+|=.|||.. .-||-.|
T Consensus 207 ~~~~~~~~~~~~~~~~mp~v~t~g~gpng~~i~g~ly~y~~~~~v~i~c~ch----g~~~~~~efv~h~~~~~~~~p~~h 282 (284)
T PF07897_consen 207 PRTNSGGDGSRNMMEDMPCVSTTGDGPNGKRIEGFLYKYGKGEEVRIVCVCH----GSFLSPAEFVKHAGGGDVANPLRH 282 (284)
T ss_pred ccccccccccccccccCCceeeccCCCCCceeeEEEEEecCCCeEEEEEEec----CCCCCHHHHHHhcCCCCcCCchhc
Confidence 34455555556666777655543221112334554432 24999997 8899999999999964 5788888
Q ss_pred c
Q 002000 297 I 297 (983)
Q Consensus 297 I 297 (983)
|
T Consensus 283 i 283 (284)
T PF07897_consen 283 I 283 (284)
T ss_pred c
Confidence 8
No 131
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=71.47 E-value=1.8 Score=39.58 Aligned_cols=32 Identities=31% Similarity=0.778 Sum_probs=25.7
Q ss_pred cccccccCCCCCCCCCCCceecCCC--CCCccCcccCCcccC
Q 002000 694 GCLLCRGCDFSKSGFGPRTILLCDQ--CEREFHVGCLKKHKM 733 (983)
Q Consensus 694 ~C~IC~~~dfs~sgf~~~tLL~CDq--CerayHv~CL~~~~m 733 (983)
.|.+|+.. .+..+.|.. |.+.||+.|....+.
T Consensus 38 ~C~~C~~~--------~Ga~i~C~~~~C~~~fH~~CA~~~~~ 71 (90)
T PF13771_consen 38 KCSICKKK--------GGACIGCSHPGCSRSFHVPCARKAGC 71 (90)
T ss_pred CCcCCCCC--------CCeEEEEeCCCCCcEEChHHHccCCe
Confidence 39999965 147899985 999999999887543
No 132
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=70.52 E-value=3.5 Score=51.06 Aligned_cols=52 Identities=19% Similarity=0.238 Sum_probs=37.6
Q ss_pred CCCCCcccchhccccCCCceEecEEEEEEEeCCeEEEEEEEEEeCCeeEEEeeeEeecCcccCChhHHHHHHHHH
Q 002000 828 ISGRDLIPSMVYGRNLRGQEFGGMYCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEK 902 (983)
Q Consensus 828 ~Sg~DLIp~MVy~~~~~r~df~Gfy~~VL~~~~~vVsaA~lri~g~~~AEip~VAT~~~~RgqG~gr~Lv~~IE~ 902 (983)
+-+-|+||+.|- ..|.+-+|.++|= |.|-+|||+|+|++.|||.+-++-+.+
T Consensus 590 ~a~GdlIpW~vs-eQf~D~~F~~l~G----------------------aRIVRIAvhP~y~~MGYGsrAvqLL~~ 641 (1011)
T KOG2036|consen 590 RAAGDLIPWTVS-EQFQDEDFPKLSG----------------------ARIVRIAVHPEYQKMGYGSRAVQLLTD 641 (1011)
T ss_pred cccCCccceehh-hhhcccchhcccC----------------------ceEEEEEeccchhccCccHHHHHHHHH
Confidence 345689998774 2355555554432 567789999999999999888777766
No 133
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=67.57 E-value=3.8 Score=35.36 Aligned_cols=34 Identities=24% Similarity=0.580 Sum_probs=27.0
Q ss_pred cccccccCCCCCCCCCCCceecCCCCCCccCcccCCccc
Q 002000 694 GCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHK 732 (983)
Q Consensus 694 ~C~IC~~~dfs~sgf~~~tLL~CDqCerayHv~CL~~~~ 732 (983)
.|.+|++.- .+.+.+++|..|...||-.|....+
T Consensus 7 ~C~~Cg~~~-----~~~dDiVvCp~CgapyHR~C~~~~g 40 (54)
T PF14446_consen 7 KCPVCGKKF-----KDGDDIVVCPECGAPYHRDCWEKAG 40 (54)
T ss_pred cChhhCCcc-----cCCCCEEECCCCCCcccHHHHhhCC
Confidence 499999752 1356899999999999999986543
No 134
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=66.09 E-value=3 Score=35.96 Aligned_cols=28 Identities=25% Similarity=0.924 Sum_probs=24.7
Q ss_pred ccccccccc----CCCeeccCCCCCccCcccC
Q 002000 604 DDLCTICAD----GGNLLPCDGCPRAFHKECA 631 (983)
Q Consensus 604 dd~C~VC~d----gG~Ll~CD~CprafH~~Cl 631 (983)
...|.+|++ +++++.|..|...||.+|.
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~ 36 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCW 36 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHH
Confidence 346999993 7899999999999999998
No 135
>COG3818 Predicted acetyltransferase, GNAT superfamily [General function prediction only]
Probab=65.68 E-value=17 Score=36.89 Aligned_cols=58 Identities=14% Similarity=0.240 Sum_probs=45.1
Q ss_pred eeEeecCcccCChhHHHHHHHHHHhhhcCccEEEec----chhhhHHHHHhccCcEEcCHHH
Q 002000 880 LVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLP----AAEEAESIWTDKFGFKKIDPEL 937 (983)
Q Consensus 880 ~VAT~~~~RgqG~gr~Lv~~IE~~l~~lgV~~LvLp----A~~~A~~~w~~kfGF~~v~~~~ 937 (983)
+|.|-...||.|.+|+|...+-..+..-|-.+|++- --..|...+...|||+++++.+
T Consensus 89 RvVVA~~aRGrG~aRalY~Dlf~~Ae~agy~~~tCEVn~DppnpasdaFHaalGF~eVG~a~ 150 (167)
T COG3818 89 RVVVASRARGRGVARALYADLFSYAELAGYPYLTCEVNLDPPNPASDAFHAALGFHEVGQAT 150 (167)
T ss_pred EEEEEecccccchHHHHHHHHHHHHHhcCCceEEEEecCCCCChHHHHHhhhcCceEccceE
Confidence 344444569999999999999999999998887763 2344666777779999999854
No 136
>COG5628 Predicted acetyltransferase [General function prediction only]
Probab=64.53 E-value=28 Score=34.92 Aligned_cols=73 Identities=11% Similarity=0.065 Sum_probs=51.7
Q ss_pred EEEEEeCCeEEEEEEEEE--eC-----CeeEEEeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEecchhhhHHHHH
Q 002000 853 CAILTVNSSVVSAGILRV--FG-----QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWT 925 (983)
Q Consensus 853 ~~VL~~~~~vVsaA~lri--~g-----~~~AEip~VAT~~~~RgqG~gr~Lv~~IE~~l~~lgV~~LvLpA~~~A~~~w~ 925 (983)
.++...+|.+||-+.+-- +- -.++|+= +...|||.||||+..++|-.+...+ -+-.+++--..|..||+
T Consensus 39 ~~~~~~~~~~igf~l~L~~~~~~~~iD~~~~efF---Ii~k~~~~GvGR~aaK~If~~~~g~-w~Va~i~EN~PA~~fwK 114 (143)
T COG5628 39 AWLFRIGGLPVGFALVLDLAHSPTPIDRAVAEFF---IVRKHRRRGVGRAAAKAIFGSAWGV-WQVATVRENTPARAFWK 114 (143)
T ss_pred eeEEEECCceeeeeeeecccCCCCcccccchheE---eeehhhccchhHHHHHHHHHHhhce-EEEEEeccCChhHHHHH
Confidence 344567899999887632 11 2355543 4457999999999999998876433 24567788888999999
Q ss_pred hccCc
Q 002000 926 DKFGF 930 (983)
Q Consensus 926 ~kfGF 930 (983)
+ +-+
T Consensus 115 ~-~~~ 118 (143)
T COG5628 115 R-VAE 118 (143)
T ss_pred h-hhc
Confidence 9 543
No 137
>PF07897 DUF1675: Protein of unknown function (DUF1675); InterPro: IPR012463 The members of this family are sequences derived from hypothetical plant proteins of unknown function. One member of this family (Q9SFV5 from SWISSPROT) is annotated as a putative RNA-binding protein, but no evidence was found to support this.
Probab=63.36 E-value=5.8 Score=44.72 Aligned_cols=32 Identities=41% Similarity=0.736 Sum_probs=29.3
Q ss_pred CeeecCCCCccCccceeeccCccCCCCCcceE
Q 002000 546 GIICHCCNSEVSPSQFEAHAGWSSRRKPYAHI 577 (983)
Q Consensus 546 GI~C~CC~~~~SpSeFE~HAG~~srrkPy~~I 577 (983)
.|+|.|=+..+||.+|-.|||...-.+|..+|
T Consensus 252 ~i~c~chg~~~~~~efv~h~~~~~~~~p~~hi 283 (284)
T PF07897_consen 252 RIVCVCHGSFLSPAEFVKHAGGGDVANPLRHI 283 (284)
T ss_pred EEEEEecCCCCCHHHHHHhcCCCCcCCchhcc
Confidence 38999999999999999999998888998887
No 138
>PF13444 Acetyltransf_5: Acetyltransferase (GNAT) domain
Probab=61.62 E-value=14 Score=34.85 Aligned_cols=51 Identities=18% Similarity=0.153 Sum_probs=34.5
Q ss_pred eEecEEEEEEEeCCeEEEEEEEEEeC-----------------------CeeEEEeeeEeecCcccCChhHHHH
Q 002000 847 EFGGMYCAILTVNSSVVSAGILRVFG-----------------------QEVAELPLVATSKINHGKGYFQLLF 897 (983)
Q Consensus 847 df~Gfy~~VL~~~~~vVsaA~lri~g-----------------------~~~AEip~VAT~~~~RgqG~gr~Lv 897 (983)
|-...+.+|...+.++||+.+|.... ..++||.++||.++||+...-..|.
T Consensus 27 D~~~~h~lv~~~~~~~VGt~Rl~~~~~~~~~~~~~~~~~f~l~~~~~~~~~~~EisRl~V~~~~R~~~~~~~L~ 100 (101)
T PF13444_consen 27 DEHSVHLLVRDKNTEVVGTVRLILPSPAGPLEGFYSESEFDLDPLLPLPRRVAEISRLCVHPEYRRRKVLLLLW 100 (101)
T ss_pred CCCccEEEEEECCCCEEEEEEeeccccccccccCCchhhcCcchhhccCCcEEEeehheECHhHCCChHHHHHh
Confidence 33334444444444577777764322 3689999999999999988777664
No 139
>KOG4135 consensus Predicted phosphoglucosamine acetyltransferase [Carbohydrate transport and metabolism]
Probab=60.42 E-value=18 Score=37.39 Aligned_cols=59 Identities=14% Similarity=0.152 Sum_probs=39.5
Q ss_pred eEEEeeeEeecCcccCChhHHHHHHHHHHhhh-cCccEEEecc--hhhhHHHHHhccCcEEc
Q 002000 875 VAELPLVATSKINHGKGYFQLLFACIEKLLSF-LRVKSIVLPA--AEEAESIWTDKFGFKKI 933 (983)
Q Consensus 875 ~AEip~VAT~~~~RgqG~gr~Lv~~IE~~l~~-lgV~~LvLpA--~~~A~~~w~~kfGF~~v 933 (983)
++|+-+.---|..||+|||+..|.++...+-+ +++.+..+-. +..+-=..++||+|.-+
T Consensus 107 ~gE~EvMIAEP~~RgKG~G~eav~~ml~y~~s~l~l~Ky~vkig~~nk~sl~lFkk~~f~q~ 168 (185)
T KOG4135|consen 107 TGEVEVMIAEPRGRGKGIGTEAVRAMLAYAYSVLKLDKYEVKIGMDNKPSLRLFKKFLFTQV 168 (185)
T ss_pred eeeEEEEEecccccCCCccHHHHHHHHHHHHHHhhhheEEEEecCCCchHHHHHHHhhheee
Confidence 45666666779999999999999999887654 4555544433 33333334455999754
No 140
>PF04377 ATE_C: Arginine-tRNA-protein transferase, C terminus; InterPro: IPR007472 Arginine-tRNA-protein transferase catalyses the post-translational conjugation of arginine to the N terminus of a protein. In eukaryotes, this functions as part of the N terminus rule pathway of protein degradation by conjugating a destabilising amino acid to the N-terminal aspartate or glutamate of a protein, targeting the protein for ubiquitin-dependent proteolysis. N-terminal cysteine is sometimes modified []. In Saccharomyces cerevisiae, Cys20, 23, 94 and/or 95 are thought to be important for activity []. Of these, only Cys 94 appears to be completely conserved in this family. This entry represents the C-terminal region of the enzyme arginine-tRNA-protein transferase, found in both eukaryotic and prokaryotic enzymes.; GO: 0004057 arginyltransferase activity, 0016598 protein arginylation
Probab=59.18 E-value=38 Score=34.03 Aligned_cols=61 Identities=5% Similarity=0.012 Sum_probs=50.6
Q ss_pred EEEEEEeCCeEEEEEEEEEeCCeeEEEeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEE
Q 002000 852 YCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIV 913 (983)
Q Consensus 852 y~~VL~~~~~vVsaA~lri~g~~~AEip~VAT~~~~RgqG~gr~Lv~~IE~~l~~lgV~~Lv 913 (983)
+.+-...+|++||||.+.+....+.-|=.+= +|++....+|...+..-.+.++.+|.+.+-
T Consensus 40 ~~~~~~~~~kLiav~v~D~l~~glSaVY~fy-DPd~~~~SlG~~~iL~eI~~a~~~~l~y~Y 100 (128)
T PF04377_consen 40 YHLEYRLDGKLIAVAVVDILPDGLSAVYTFY-DPDYSKRSLGTYSILREIELARELGLPYYY 100 (128)
T ss_pred EEEEEEeCCeEEEEEEeecccchhhheeeee-CCCccccCcHHHHHHHHHHHHHHcCCCEEe
Confidence 3344458999999999998887765555443 889999999999999999999999999998
No 141
>KOG2535 consensus RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase [Chromatin structure and dynamics; Transcription]
Probab=57.20 E-value=17 Score=41.95 Aligned_cols=66 Identities=17% Similarity=0.283 Sum_probs=43.7
Q ss_pred EEEEeCCeeEEEeeeEee-cCcccCChhHHHHHHHHHHhhhcC-ccEEEecchhhhHHHHHhccCcEEcCHH
Q 002000 867 ILRVFGQEVAELPLVATS-KINHGKGYFQLLFACIEKLLSFLR-VKSIVLPAAEEAESIWTDKFGFKKIDPE 936 (983)
Q Consensus 867 ~lri~g~~~AEip~VAT~-~~~RgqG~gr~Lv~~IE~~l~~lg-V~~LvLpA~~~A~~~w~~kfGF~~v~~~ 936 (983)
-|||+|.- +|.-+-+ ..||.||||..||+..|+.+++-+ -.++-+-.-......|.+ |||..-++-
T Consensus 481 ELHVYGs~---vpv~~rDp~KfQHQG~GtLLmeEAERIAr~EHgS~KiavISGVGtR~YY~k-lGY~LdGPY 548 (554)
T KOG2535|consen 481 ELHVYGSV---VPVHSRDPTKFQHQGFGTLLMEEAERIAREEHGSGKIAVISGVGTRNYYRK-LGYELDGPY 548 (554)
T ss_pred eeeeccee---eecccCCchhhhhcchhhHHHHHHHHHHHHhcCCCceEEEeccchHHHHHh-hCeeecChh
Confidence 45666642 2333333 349999999999999999998654 445555555455566666 999876653
No 142
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=56.71 E-value=6.6 Score=45.38 Aligned_cols=43 Identities=30% Similarity=0.756 Sum_probs=32.0
Q ss_pred cccccccc---CCCeeccCCCCCccCcccCC--CCCCCCCCcccccccccc
Q 002000 605 DLCTICAD---GGNLLPCDGCPRAFHKECAS--LSSIPQGDWYCKYCQNMF 650 (983)
Q Consensus 605 d~C~VC~d---gG~Ll~CD~CprafH~~Cl~--l~~vP~g~W~C~~C~~~~ 650 (983)
+.|.||.+ .|+.+--=-|.+.||..|++ +.+. .-+||.|+...
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~---r~~CPvCK~di 277 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQT---RTFCPVCKRDI 277 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhc---CccCCCCCCcC
Confidence 59999996 36666557899999999996 2221 23799999753
No 143
>PF13880 Acetyltransf_13: ESCO1/2 acetyl-transferase
Probab=56.06 E-value=8.6 Score=34.88 Aligned_cols=27 Identities=15% Similarity=0.146 Sum_probs=23.4
Q ss_pred EeeeEeecCcccCChhHHHHHHHHHHh
Q 002000 878 LPLVATSKINHGKGYFQLLFACIEKLL 904 (983)
Q Consensus 878 ip~VAT~~~~RgqG~gr~Lv~~IE~~l 904 (983)
|.+|=|.+.+||+|++++|++++-+..
T Consensus 8 I~RIWV~~~~RR~GIAt~Lld~ar~~~ 34 (70)
T PF13880_consen 8 ISRIWVSPSHRRKGIATRLLDAARENF 34 (70)
T ss_pred eEEEEeChhhhhhhHHHHHHHHHHHhc
Confidence 667778999999999999999987763
No 144
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=55.30 E-value=0.73 Score=36.98 Aligned_cols=40 Identities=28% Similarity=0.665 Sum_probs=24.4
Q ss_pred ccccccccC---CCeeccCCCCCccCcccCC-CCCCCCCCccccccc
Q 002000 605 DLCTICADG---GNLLPCDGCPRAFHKECAS-LSSIPQGDWYCKYCQ 647 (983)
Q Consensus 605 d~C~VC~dg---G~Ll~CD~CprafH~~Cl~-l~~vP~g~W~C~~C~ 647 (983)
|.|.||.+. ++.+.--.|...||..|+. +-. ....||.|+
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~---~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLK---RNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHH---HSSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHH---hCCcCCccC
Confidence 568999853 3433333499999999994 211 123888885
No 145
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=55.24 E-value=6.7 Score=35.14 Aligned_cols=46 Identities=28% Similarity=0.559 Sum_probs=18.0
Q ss_pred cccccccc----CCC--eeccC--CCCCccCcccCC-C----CC----CCCCCcccccccccc
Q 002000 605 DLCTICAD----GGN--LLPCD--GCPRAFHKECAS-L----SS----IPQGDWYCKYCQNMF 650 (983)
Q Consensus 605 d~C~VC~d----gG~--Ll~CD--~CprafH~~Cl~-l----~~----vP~g~W~C~~C~~~~ 650 (983)
..|.||.. .++ .+.|+ .|...||..||. | .. ..--.+-||.|...+
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i 65 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPI 65 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEE
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCee
Confidence 46889884 233 47897 799999999993 1 11 111235799998654
No 146
>PF01233 NMT: Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain; InterPro: IPR022676 Myristoyl-CoA:protein N-myristoyltransferase (2.3.1.97 from EC) (Nmt) [] is the enzyme responsible for transferring a myristate group on the N-terminal glycine of a number of cellular eukaryotics and viral proteins. Nmt is a monomeric protein of about 50 to 60kDa whose sequence appears to be well conserved. The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. This entry represents the N-terminal region. ; GO: 0004379 glycylpeptide N-tetradecanoyltransferase activity; PDB: 2P6G_B 2P6F_F 2P6E_A 1IIC_A 1IID_A 2NMT_A 4A33_A 3H5Z_A 4A2Z_A 2WSA_A ....
Probab=54.84 E-value=82 Score=33.08 Aligned_cols=110 Identities=13% Similarity=0.215 Sum_probs=69.1
Q ss_pred CceeEEccCCCCChhhHHHHHHHHHhhhhcCCCcccCCCCCCcccchhccccC-----CCceEecEEEEEEEe--CCeEE
Q 002000 791 DVRWRLLSGKAATPETRLLLSQAVAIFHDCFDPIVDSISGRDLIPSMVYGRNL-----RGQEFGGMYCAILTV--NSSVV 863 (983)
Q Consensus 791 ~i~W~lL~gk~~s~e~~skLa~AL~If~EcFdPivD~~Sg~DLIp~MVy~~~~-----~r~df~Gfy~~VL~~--~~~vV 863 (983)
+|.|..+. -++...|.+.-..+.+-+.-- .|-.-..-|+.+| .--+|.-.|.+.+.. .+++|
T Consensus 23 gF~W~~~d-----l~d~~~l~ely~lL~~nYVED------dd~~fRf~YS~efL~WaL~pPg~~~~whiGVR~~~~~kLv 91 (162)
T PF01233_consen 23 GFEWSTLD-----LNDDEELKELYELLNENYVED------DDNMFRFDYSKEFLKWALKPPGWKKEWHIGVRVKSSKKLV 91 (162)
T ss_dssp TEEEEE-------TTSHHHHHHHHHHHHHHSSBT------TTSSEEE---HHHHHHHHTSTT--GGGEEEEEETTTTEEE
T ss_pred CCEEEecC-----CCCHHHHHHHHHHHHhcCccC------CcceEEeeCCHHHHhheeeCcCCccceEEEEEECCCCEEE
Confidence 68998764 223455667777777776221 1122223344443 333444555555554 57777
Q ss_pred E-----EEEEEEeCC--eeEEEeeeEeecCcccCChhHHHHHHHHHHhhhcCccE
Q 002000 864 S-----AGILRVFGQ--EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKS 911 (983)
Q Consensus 864 s-----aA~lri~g~--~~AEip~VAT~~~~RgqG~gr~Lv~~IE~~l~~lgV~~ 911 (983)
| -+.+||.+. ..+||=++.+++.+|.+++.=.|+..|=+.+...||-.
T Consensus 92 gfIsaip~~irv~~~~~~~~eINFLCVhKklRskrlAPvLIkEItRRvn~~gI~q 146 (162)
T PF01233_consen 92 GFISAIPATIRVRDKVIKMVEINFLCVHKKLRSKRLAPVLIKEITRRVNLQGIWQ 146 (162)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHHTTT--E
T ss_pred EEEccceEEEEEeeeEeeeeeEEEEeecHhHhhcCCcHHHHHHHHHHhhhcCcee
Confidence 6 356778775 79999999999999999999999999999988888754
No 147
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=54.27 E-value=6.9 Score=50.62 Aligned_cols=44 Identities=27% Similarity=0.761 Sum_probs=37.5
Q ss_pred cccccccCCCCCCCCCCCceecCCCCCCccCcccCCcccCCccccCCCCCeEecCCch
Q 002000 694 GCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCS 751 (983)
Q Consensus 694 ~C~IC~~~dfs~sgf~~~tLL~CDqCerayHv~CL~~~~m~~LkelP~g~WfC~~~C~ 751 (983)
.|.+|+.. +.++.|..|++-||..|..+ ++.+.|+..|-| .-|.
T Consensus 346 hcrf~~d~---------~~~lc~Et~prvvhlEcv~h----P~~~~~s~~~e~-evc~ 389 (1414)
T KOG1473|consen 346 HCRFCHDL---------GDLLCCETCPRVVHLECVFH----PRFAVPSAFWEC-EVCN 389 (1414)
T ss_pred cccccCcc---------cceeecccCCceEEeeecCC----ccccCCCccchh-hhhh
Confidence 49999854 47899999999999999987 567889999999 6774
No 148
>PF01853 MOZ_SAS: MOZ/SAS family; InterPro: IPR002717 Moz is a monocytic leukemia Zn_finger protein and the SAS protein from Saccharomyces cerevisiae (Baker's yeast) is involved in silencing the Hmr locus. These proteins were reported to be homologous to acetyltransferases [] but this similarity is not supported by standard sequence analysis.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3TO6_A 1MJA_A 1MJ9_A 3TO7_A 3TO9_A 1MJB_A 1FY7_A 2OZU_A 2RC4_A 2OU2_A ....
Probab=53.38 E-value=54 Score=35.17 Aligned_cols=84 Identities=15% Similarity=0.090 Sum_probs=47.0
Q ss_pred HHHHHHHHhhhhcCCCcccCCCCCCcccchhccccCCCceEec--EEEEEEEeCCe--EEEEEEEEEeCCeeEEEeeeEe
Q 002000 808 LLLSQAVAIFHDCFDPIVDSISGRDLIPSMVYGRNLRGQEFGG--MYCAILTVNSS--VVSAGILRVFGQEVAELPLVAT 883 (983)
Q Consensus 808 skLa~AL~If~EcFdPivD~~Sg~DLIp~MVy~~~~~r~df~G--fy~~VL~~~~~--vVsaA~lri~g~~~AEip~VAT 883 (983)
....+-|-.|-..| +|++|-- .|... ||++.-..++. +||-=+=--...+---+--|-|
T Consensus 26 ~~yCqnLcLlaKLF---Ld~Ktly--------------ydv~~F~FYVl~e~d~~g~h~vGyFSKEk~s~~~~NLsCIl~ 88 (188)
T PF01853_consen 26 KLYCQNLCLLAKLF---LDHKTLY--------------YDVDPFLFYVLTEKDDDGFHIVGYFSKEKESWDNNNLSCILT 88 (188)
T ss_dssp HHHHHHHHHHHHTT----SSGCCT--------------T-STTEEEEEEEEEETTEEEEEEEEEEESS-TT-EEESEEEE
T ss_pred chHHHHHHHHHHHH---hhCeEEE--------------eecCceEEEEEEEecCccceeEEEEEEEecccCCeeEeehhh
Confidence 55688888888888 3433311 12333 55544344432 3333221111122235666889
Q ss_pred ecCcccCChhHHHHHHHHHHhhhcC
Q 002000 884 SKINHGKGYFQLLFACIEKLLSFLR 908 (983)
Q Consensus 884 ~~~~RgqG~gr~Lv~~IE~~l~~lg 908 (983)
.|.||++|||+.|++.-=.+.+.-|
T Consensus 89 lP~yQrkGyG~~LI~fSY~LSr~e~ 113 (188)
T PF01853_consen 89 LPPYQRKGYGRFLIDFSYELSRREG 113 (188)
T ss_dssp -GGGTTSSHHHHHHHHHHHHHHHTT
T ss_pred cchhhhcchhhhhhhhHHHHhhccC
Confidence 9999999999999987666555443
No 149
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=52.64 E-value=2.3 Score=38.24 Aligned_cols=43 Identities=28% Similarity=0.622 Sum_probs=25.3
Q ss_pred ccccccccccC-----------C-C-eeccCCCCCccCcccCCCCCCCCCCccccccc
Q 002000 603 NDDLCTICADG-----------G-N-LLPCDGCPRAFHKECASLSSIPQGDWYCKYCQ 647 (983)
Q Consensus 603 ndd~C~VC~dg-----------G-~-Ll~CD~CprafH~~Cl~l~~vP~g~W~C~~C~ 647 (983)
.+|.|.||... + + .+.-..|.+.||..|+. .+-.....||.|+
T Consensus 18 ~~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~--~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 18 ADDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCIS--QWLKQNNTCPLCR 73 (73)
T ss_dssp CCSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHH--HHHTTSSB-TTSS
T ss_pred cCCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHH--HHHhcCCcCCCCC
Confidence 34558888842 1 1 22224599999999994 1112234899885
No 150
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=52.29 E-value=10 Score=45.50 Aligned_cols=47 Identities=26% Similarity=0.610 Sum_probs=39.3
Q ss_pred ccccccccccccCCCeeccCCCCCccCcccCCCCCCCCCCcccccccc
Q 002000 601 KDNDDLCTICADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQN 648 (983)
Q Consensus 601 ~~ndd~C~VC~dgG~Ll~CD~CprafH~~Cl~l~~vP~g~W~C~~C~~ 648 (983)
..+.+.|.+|.++|.+++|+.|+.++|..|..+ ..|+..|.|..|..
T Consensus 86 ~~~~~~c~vc~~ggs~v~~~s~~~~~~r~c~~~-~~~~c~~~~~d~~~ 132 (463)
T KOG1081|consen 86 KIEPSECFVCFKGGSLVTCKSRIQAPHRKCKPA-QLEKCSKRCTDCRA 132 (463)
T ss_pred CCCcchhccccCCCccceeccccccccccCcCc-cCcccccCCcceee
Confidence 457789999999999999999999999999864 55677788777763
No 151
>PRK00756 acyltransferase NodA; Provisional
Probab=49.75 E-value=26 Score=36.93 Aligned_cols=59 Identities=29% Similarity=0.285 Sum_probs=42.5
Q ss_pred EEEEeC-CeEEEEEEEEEe---CC---eeEEEeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEE
Q 002000 854 AILTVN-SSVVSAGILRVF---GQ---EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIV 913 (983)
Q Consensus 854 ~VL~~~-~~vVsaA~lri~---g~---~~AEip~VAT~~~~RgqG~gr~Lv~~IE~~l~~lgV~~Lv 913 (983)
++.|+. |...-.+.||.| |. =+||+.+.||+++..|.||+..+ ..+--.|++|||+--|
T Consensus 57 aIgyD~~GVaAH~G~LRRFIkVg~vDlLVaElGLygVRpDLEGlGi~~S~-r~m~PvLq~LgVPF~F 122 (196)
T PRK00756 57 AIAYDSHGVAAHMGLLRRFIKVGEVDLLVAELGLYGVRPDLEGLGIAHSI-RAMYPVLQELGVPFAF 122 (196)
T ss_pred EEeecCccHhHhHHHHhhhheecccceeEEEeeeeeeccccccccchhhH-HHHHHHHHhcCCCeec
Confidence 445543 333334555433 21 38999999999999999999876 6888889999998544
No 152
>PLN03238 probable histone acetyltransferase MYST; Provisional
Probab=47.48 E-value=37 Score=38.51 Aligned_cols=31 Identities=23% Similarity=0.159 Sum_probs=24.7
Q ss_pred EeeeEeecCcccCChhHHHHHHHHHHhhhcC
Q 002000 878 LPLVATSKINHGKGYFQLLFACIEKLLSFLR 908 (983)
Q Consensus 878 ip~VAT~~~~RgqG~gr~Lv~~IE~~l~~lg 908 (983)
+--|-|.|.||++|||+.|++.-=++.+.-|
T Consensus 158 LaCIltLPpyQrkGyG~~LI~fSYeLSr~Eg 188 (290)
T PLN03238 158 LACILTLPPYQRKGYGKFLISFAYELSKREG 188 (290)
T ss_pred EEEEEecChhhhccHhHhHHHHHhHHhhccC
Confidence 5567899999999999999987666554444
No 153
>COG3916 LasI N-acyl-L-homoserine lactone synthetase [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=46.88 E-value=1.1e+02 Score=33.47 Aligned_cols=82 Identities=22% Similarity=0.165 Sum_probs=62.0
Q ss_pred EecEEEEEEEeCCeEEEEEEEEEeC---------------------CeeEEEeeeEeec--CcccCC----hhHHHHHHH
Q 002000 848 FGGMYCAILTVNSSVVSAGILRVFG---------------------QEVAELPLVATSK--INHGKG----YFQLLFACI 900 (983)
Q Consensus 848 f~Gfy~~VL~~~~~vVsaA~lri~g---------------------~~~AEip~VAT~~--~~RgqG----~gr~Lv~~I 900 (983)
..-.|.+.+..+|+|+|+++|-... .+++|.-++|+.. .-+.+| ....||..+
T Consensus 50 ~~t~Yll~~~~~g~I~G~~RlLptt~P~mL~~vF~~Ll~~~~~P~~p~vwEsSRF~vd~~~a~~~~g~~~~a~~el~~g~ 129 (209)
T COG3916 50 LDTVYLLALTSDGRIVGCVRLLPTTGPYMLTDVFPALLEGGPPPSSPGVWESSRFAVDKPSARRAAGGVSPAAYELFAGM 129 (209)
T ss_pred CCceEEEEEcCCCcEEEEEEeccCCCcchhhhhhHHHhcCCCCCCCCCeEEEeeeeeccccchhhcCCccHHHHHHHHHH
Confidence 3446887778899999999985432 4899999999987 445444 267899999
Q ss_pred HHHhhhcCccEEEecchhhhHHHHHhccCc
Q 002000 901 EKLLSFLRVKSIVLPAAEEAESIWTDKFGF 930 (983)
Q Consensus 901 E~~l~~lgV~~LvLpA~~~A~~~w~~kfGF 930 (983)
.+.+...|+.+|+.=+..-.+-+... .||
T Consensus 130 ie~a~~~G~~~IvtVt~~~meril~r-~Gw 158 (209)
T COG3916 130 IEYALARGITGIVTVTDTGMERILRR-AGW 158 (209)
T ss_pred HHHHHHcCCceEEEEEchHHHHHHHH-cCC
Confidence 99999999999997666555555544 454
No 154
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=45.11 E-value=12 Score=39.23 Aligned_cols=34 Identities=21% Similarity=0.525 Sum_probs=25.5
Q ss_pred ccccccCCCCCCCCCCCceecCCCCCCccCcccCCcc
Q 002000 695 CLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKH 731 (983)
Q Consensus 695 C~IC~~~dfs~sgf~~~tLL~CDqCerayHv~CL~~~ 731 (983)
|..|+..+-+ ...+.|+.|..|..+||..||-+.
T Consensus 2 C~~C~~~g~~---~~kG~Lv~CQGCs~sYHk~CLG~R 35 (175)
T PF15446_consen 2 CDTCGYEGDD---RNKGPLVYCQGCSSSYHKACLGPR 35 (175)
T ss_pred cccccCCCCC---ccCCCeEEcCccChHHHhhhcCCc
Confidence 7778643311 235689999999999999999764
No 155
>PRK14852 hypothetical protein; Provisional
Probab=44.72 E-value=63 Score=42.39 Aligned_cols=83 Identities=18% Similarity=0.166 Sum_probs=64.2
Q ss_pred EEEEEeCCeEEEEEEEEEe----------------------CCeeEEEeeeEeecCcccCChhHHHHHHHHHHhhhcCcc
Q 002000 853 CAILTVNSSVVSAGILRVF----------------------GQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVK 910 (983)
Q Consensus 853 ~~VL~~~~~vVsaA~lri~----------------------g~~~AEip~VAT~~~~RgqG~gr~Lv~~IE~~l~~lgV~ 910 (983)
++++-..+++|++.++.+- |..++|+-.+|+++..|.+-+--.|+..+-+.+...++.
T Consensus 77 ~~i~k~~~~~l~T~t~~~ds~~~Gl~~D~lf~~eLd~lr~~Gr~v~EvtrLa~d~~~~~~~l~~~l~~~~~~y~~~~~~d 156 (989)
T PRK14852 77 VFIFKSYHDVLCTLTHIPDSGLFGLPMDTLYKPEVDALRAQGRNVVEVGALATQYSRRWTNLMVFLAKAMFQYSMMSEVD 156 (989)
T ss_pred EEEeccCCcEEEEEEEecCCcccCcCHHHHHHHHHHHHHHcCCeEEeeehheechhhcccchhHHHHHHHHHHHHHcCCC
Confidence 3444455677777766543 147999999999887777665556666665556678999
Q ss_pred EEEecchhhhHHHHHhccCcEEcCH
Q 002000 911 SIVLPAAEEAESIWTDKFGFKKIDP 935 (983)
Q Consensus 911 ~LvLpA~~~A~~~w~~kfGF~~v~~ 935 (983)
.+++---+.=..||++-|||+.+++
T Consensus 157 d~~i~VnPkH~~FY~r~l~f~~ig~ 181 (989)
T PRK14852 157 DILVTVNPKHVKFYTDIFLFKPFGE 181 (989)
T ss_pred eEEEEECcchHHHHHHHhCCccccc
Confidence 9999999999999999999999986
No 156
>PLN03239 histone acetyltransferase; Provisional
Probab=43.88 E-value=31 Score=40.08 Aligned_cols=32 Identities=25% Similarity=0.218 Sum_probs=24.6
Q ss_pred EEeeeEeecCcccCChhHHHHHHHHHHhhhcC
Q 002000 877 ELPLVATSKINHGKGYFQLLFACIEKLLSFLR 908 (983)
Q Consensus 877 Eip~VAT~~~~RgqG~gr~Lv~~IE~~l~~lg 908 (983)
-+--|-|.|.||++|||+.|++.-=++.+.-|
T Consensus 215 NLaCIltLPpyQrkGyG~lLI~fSYeLSr~Eg 246 (351)
T PLN03239 215 NLACILTFPAHQRKGYGRFLIAFSYELSKKEE 246 (351)
T ss_pred ceEEEEecChhhhcchhhhhHhhhhHhhhhcC
Confidence 35667899999999999999986655544433
No 157
>KOG2752 consensus Uncharacterized conserved protein, contains N-recognin-type Zn-finger [General function prediction only]
Probab=43.70 E-value=16 Score=41.69 Aligned_cols=108 Identities=19% Similarity=0.324 Sum_probs=58.2
Q ss_pred cccccc-cCCCeeccCCCCCccCcccCCCCCCCCCCcccccccccccccccccccccccccccccccC-chhchhhhhhc
Q 002000 606 LCTICA-DGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMFERKRFLQHDANAVEAGRVSGVD-SVEQITKRCIR 683 (983)
Q Consensus 606 ~C~VC~-dgG~Ll~CD~CprafH~~Cl~l~~vP~g~W~C~~C~~~~~~ek~v~~n~na~a~g~~~Gvd-~~eqi~kRC~r 683 (983)
.|.-|. +++....|-.|.-.+|-.-..+.-...+.+.|.-|..++.+... +....+..++.. .+.+
T Consensus 57 sClTC~P~~~~agvC~~C~~~CH~~H~lveL~tKR~FrCDCg~sk~g~~sc-----~l~~~~~~~n~~N~YNh------- 124 (345)
T KOG2752|consen 57 SCLTCTPAPEMAGVCYACSLSCHDGHELVELYTKRNFRCDCGNSKFGRCSC-----NLLEDKDAENSENLYNH------- 124 (345)
T ss_pred EeecccCChhhceeEEEeeeeecCCceeeeccccCCccccccccccccccc-----ccccccccccchhhhhh-------
Confidence 466665 45567778888766666555455556688988888766543211 000000000000 0000
Q ss_pred eeccccccCCcccccccCCCCCCCCCCCceecCCCCCCccC-cccCCcc
Q 002000 684 IVKNLEAELSGCLLCRGCDFSKSGFGPRTILLCDQCEREFH-VGCLKKH 731 (983)
Q Consensus 684 ~vk~~e~e~~~C~IC~~~dfs~sgf~~~tLL~CDqCerayH-v~CL~~~ 731 (983)
....-+| .|........-..++.|++|-.|+-||| -+|++..
T Consensus 125 -----NfqG~~C-~Cd~~Ypdp~~~~e~~m~QC~iCEDWFHce~c~~~~ 167 (345)
T KOG2752|consen 125 -----NFQGLFC-KCDTPYPDPVRTEEGEMLQCVICEDWFHCEGCMQAK 167 (345)
T ss_pred -----hhcceeE-EecCCCCCccccccceeeeEEeccchhcccccCccc
Confidence 0011112 3444432222224678999999999999 9998764
No 158
>PRK01305 arginyl-tRNA-protein transferase; Provisional
Probab=43.17 E-value=1.1e+02 Score=33.85 Aligned_cols=57 Identities=7% Similarity=0.048 Sum_probs=47.8
Q ss_pred EEeCCeEEEEEEEEEeCCeeEEEeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEE
Q 002000 856 LTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIV 913 (983)
Q Consensus 856 L~~~~~vVsaA~lri~g~~~AEip~VAT~~~~RgqG~gr~Lv~~IE~~l~~lgV~~Lv 913 (983)
.+.+|++||+|.+.+....+.-|-.+ =+|+|-..++|...+..-.+.++.+|.+.+-
T Consensus 149 y~~~g~LiaVav~D~l~d~lSAVY~F-yDPd~~~~SLG~~~iL~qI~~ak~~gl~y~Y 205 (240)
T PRK01305 149 FRGDGKLVAVAVTDVLDDGLSAVYTF-YDPDEEHRSLGTFAILWQIELAKRLGLPYVY 205 (240)
T ss_pred EEeCCeEEEEEEEeccCCceeeEEEe-eCCCccccCCHHHHHHHHHHHHHHcCCCeEe
Confidence 34789999999999988877666433 4888888889998888888999999999988
No 159
>PF12261 T_hemolysin: Thermostable hemolysin; InterPro: IPR022050 This family of proteins is found in bacteria. Proteins in this family are typically between 200 and 228 amino acids in length. T_hemolysin is a pore-forming toxin of bacteria, able to lyse erythrocytes from a number of mammalian species.
Probab=43.17 E-value=66 Score=34.19 Aligned_cols=55 Identities=22% Similarity=0.397 Sum_probs=47.6
Q ss_pred CeeEEEeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEecchhhhHHHHHhccCcEE
Q 002000 873 QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKK 932 (983)
Q Consensus 873 ~~~AEip~VAT~~~~RgqG~gr~Lv~~IE~~l~~lgV~~LvLpA~~~A~~~w~~kfGF~~ 932 (983)
..++||.-+|.. +.|.++.|+..+-..|...|.+.++.-|.......+.+ +|+..
T Consensus 85 ~~IvEvGnLAs~----~~g~~~~l~~~l~~~L~~~g~~w~vfTaT~~lr~~~~r-lgl~~ 139 (179)
T PF12261_consen 85 SQIVEVGNLASF----SPGAARLLFAALAQLLAQQGFEWVVFTATRQLRNLFRR-LGLPP 139 (179)
T ss_pred hheeEeechhhc----CcccHHHHHHHHHHHHHHCCCCEEEEeCCHHHHHHHHH-cCCCc
Confidence 357888888765 48999999999999999999999999999999888887 77654
No 160
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=42.90 E-value=35 Score=42.12 Aligned_cols=92 Identities=17% Similarity=0.338 Sum_probs=46.3
Q ss_pred cccccccCCCCCCCCCCCceecCCCCCCccCcccCCcccCCccc-----cCCCCCeEecCCchhhHHHHHHhhhhccc-c
Q 002000 694 GCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLR-----ELPKGKWFCCMDCSRINSVLQNLLVQEAE-K 767 (983)
Q Consensus 694 ~C~IC~~~dfs~sgf~~~tLL~CDqCerayHv~CL~~~~m~~Lk-----elP~g~WfC~~~C~~I~~~LqkLva~g~e-~ 767 (983)
.|..|+..+ .+ ==+|+.|++-|+..+|..+.- -+. --++..||= .=......|.+.+...++ .
T Consensus 144 ~cp~cg~~~-----ar---GD~Ce~Cg~~~~P~~l~~p~~-~i~g~~p~~r~~~hyFf--~L~~~~~~L~~~~~~~~~~~ 212 (558)
T COG0143 144 TCPKCGGED-----AR---GDQCENCGRTLDPTELINPVC-VISGATPEVREEEHYFF--RLSKFQDKLLEWYESNPDFI 212 (558)
T ss_pred cCCCcCccc-----cC---cchhhhccCcCCchhcCCCee-EeeCCCcccccceeEEE--EHHHhHHHHHHHHHhCcccc
Confidence 488888532 01 127999999999998743210 000 011345554 233444455555544432 2
Q ss_pred CchhhHHHhhhhhcCcccc--ccccCceeEE
Q 002000 768 LPEFHLNAIKKYAGNSLET--VSDIDVRWRL 796 (983)
Q Consensus 768 lp~sll~~I~k~~e~gle~--~~~~~i~W~l 796 (983)
.|.+..+...+..+.|+.. .++.++.|=+
T Consensus 213 ~p~~~~ne~~~~i~~GL~d~~IsR~~~~WGi 243 (558)
T COG0143 213 WPANRRNEVLNFLKEGLKDLSITRTDLDWGI 243 (558)
T ss_pred CChHHHHHHHHHHHccCcccceecCCCCCCc
Confidence 5666554443333345543 2334666643
No 161
>PHA02929 N1R/p28-like protein; Provisional
Probab=42.19 E-value=8.6 Score=42.37 Aligned_cols=47 Identities=23% Similarity=0.504 Sum_probs=31.2
Q ss_pred cccccccccccCCC--------eeccCCCCCccCcccCCCCCCCCCCcccccccccc
Q 002000 602 DNDDLCTICADGGN--------LLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMF 650 (983)
Q Consensus 602 ~ndd~C~VC~dgG~--------Ll~CD~CprafH~~Cl~l~~vP~g~W~C~~C~~~~ 650 (983)
..+..|.+|.+.-. ...-..|.+.||..|+. .+-...-.||.|+..+
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~--~Wl~~~~tCPlCR~~~ 226 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECID--IWKKEKNTCPVCRTPF 226 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHH--HHHhcCCCCCCCCCEe
Confidence 34678999997511 12335799999999994 1112234799999754
No 162
>PF04958 AstA: Arginine N-succinyltransferase beta subunit; InterPro: IPR007041 Arginine N-succinyltransferase catalyses the transfer of succinyl-CoA to arginine to produce succinylarginine. This is the first step in arginine catabolism via the arginine succinyltransferase pathway. Six major L-arginine-degrading pathways have been described for prokaryotes []. Many bacteria arginine succinyltransferase 2.3.1.109 from EC, which is the AstA protein of the succinyltransferase (ast) pathway operon consists of five genes. In a few species, such as Pseudomonas aeruginosa, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST). This entry represents the family of proteins that make up the beta subunit of the heterodimer of Ast and AOST.; GO: 0008791 arginine N-succinyltransferase activity, 0006527 arginine catabolic process; PDB: 1YLE_A.
Probab=41.17 E-value=44 Score=38.85 Aligned_cols=105 Identities=19% Similarity=0.229 Sum_probs=57.6
Q ss_pred hhhHHHHHHHHHhhhhcC-CCcccCCCCCCcccchhccccCCCceEecEEEEEEEe--CCeEEEEEEEEEe-C-------
Q 002000 804 PETRLLLSQAVAIFHDCF-DPIVDSISGRDLIPSMVYGRNLRGQEFGGMYCAILTV--NSSVVSAGILRVF-G------- 872 (983)
Q Consensus 804 ~e~~skLa~AL~If~EcF-dPivD~~Sg~DLIp~MVy~~~~~r~df~Gfy~~VL~~--~~~vVsaA~lri~-g------- 872 (983)
+.+...|..-++-=.+.| ...++. -..-.|.+|||. .|+|||++.|..- |
T Consensus 30 P~d~~~L~~rI~~S~~sFa~~~~~~-------------------~~~~~YlfVLED~~tg~vvGts~I~a~vG~~~PfY~ 90 (342)
T PF04958_consen 30 PPDREALAERIERSERSFAGRDVDF-------------------PGDEGYLFVLEDTETGEVVGTSAIEAAVGLDEPFYS 90 (342)
T ss_dssp -S-HHHHHHHHHHHHHHHH-TT-----------------------S--EEEEEEEETTT--EEEEEEEESSTTSSS---E
T ss_pred CCCHHHHHHHHHHHHHHhhccccCC-------------------CCccceEEEEEecCCCcEEEEEeEEeccCCCCCcEE
Confidence 556666666666556666 233221 012359999996 5899999987531 1
Q ss_pred ----------------------------CeeEEEeeeEeecCcccCChhHHHHHH----HHHHhhhcCccEEEecc----
Q 002000 873 ----------------------------QEVAELPLVATSKINHGKGYFQLLFAC----IEKLLSFLRVKSIVLPA---- 916 (983)
Q Consensus 873 ----------------------------~~~AEip~VAT~~~~RgqG~gr~Lv~~----IE~~l~~lgV~~LvLpA---- 916 (983)
.+-.||..+=++++||+-|.|+.|-.+ |-+.-..++ ++++.--
T Consensus 91 yr~~~~vh~S~~L~v~~~~~~L~L~~d~tG~sEl~tLfL~p~~R~~~~G~lLSr~RfLFiA~~~~rF~-~~viAElrG~~ 169 (342)
T PF04958_consen 91 YRVSTLVHASRELGVRNRHETLTLSNDYTGCSELCTLFLDPDYRGGGNGRLLSRSRFLFIAQHRERFA-DRVIAELRGVS 169 (342)
T ss_dssp EEEEEEEEEETTTTEEEEEEEEEEE-TTTTSEEEEEEEE-GGGTTSHHHHHHHHHHHHHHHH-GGGS--SEEEEE--B--
T ss_pred EEcCceeEcCcccCCccceeeEeeecCCCCCeeeEEEEECHHHcCCchHHHHHHHHHHHHHhChhhcc-hheeeeccCCc
Confidence 567899999999999999999887543 222212222 3443221
Q ss_pred -hhhhHHHHHhccC
Q 002000 917 -AEEAESIWTDKFG 929 (983)
Q Consensus 917 -~~~A~~~w~~kfG 929 (983)
..---|||.. +|
T Consensus 170 De~G~SPFWda-lG 182 (342)
T PF04958_consen 170 DEDGRSPFWDA-LG 182 (342)
T ss_dssp -TT---HHHHH-TG
T ss_pred CCCCCCchHHH-hh
Confidence 1235799998 65
No 163
>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms]
Probab=40.59 E-value=10 Score=44.60 Aligned_cols=34 Identities=26% Similarity=0.619 Sum_probs=19.9
Q ss_pred ccccccCCCCCCCCCCCceecCCCCCCccCcccCCc
Q 002000 695 CLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKK 730 (983)
Q Consensus 695 C~IC~~~dfs~sgf~~~tLL~CDqCerayHv~CL~~ 730 (983)
|.+|++.-....|-++-.-+.| =+|-||+.|.+=
T Consensus 397 Cs~C~~PI~P~~G~~etvRvva--mdr~fHv~CY~C 430 (468)
T KOG1701|consen 397 CSVCGNPILPRDGKDETVRVVA--MDRDFHVNCYKC 430 (468)
T ss_pred hhhccCCccCCCCCcceEEEEE--ccccccccceeh
Confidence 9999876544443222222333 358899999753
No 164
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=40.53 E-value=32 Score=36.89 Aligned_cols=71 Identities=21% Similarity=0.459 Sum_probs=45.3
Q ss_pred CCccccccccCCc-cHHHHHHHhhCCCchhHHHHHHh-------------------------hhcCCCccCceeecccCC
Q 002000 291 RRASQYICFENGK-SLLEVLRACRSVPLPMLKATLQS-------------------------ALSSLPEEKSFACVRCKG 344 (983)
Q Consensus 291 ~~p~~~I~LenG~-sL~~vl~a~~~~~l~~l~~~I~~-------------------------~ig~~~~~~~~~C~~Ck~ 344 (983)
..+.+|++-+... ||.|+++.-.+.=+..|+.+++. +|=+.-.....+|..|++
T Consensus 101 ~~~~~hl~~~~~~YSl~DL~~v~~G~L~~~L~~l~~~~~~HV~~C~lC~~kGfiCe~C~~~~~IfPF~~~~~~~C~~C~~ 180 (202)
T PF13901_consen 101 RQPRDHLLEDPHLYSLADLVQVKSGQLLPQLEKLVQFAEKHVYSCELCQQKGFICEICNSDDIIFPFQIDTTVRCPKCKS 180 (202)
T ss_pred ccchhhhhhCCceEcHHHHHHHhhchHHHHHHHHHHHHHHHHHHhHHHHhCCCCCccCCCCCCCCCCCCCCeeeCCcCcc
Confidence 3778887544444 99998888666544445444333 111221236778888888
Q ss_pred cccccccCCCCCCCCCCcccc
Q 002000 345 TFPITCVGKTGPGPLCNSCVK 365 (983)
Q Consensus 345 sf~~~~~~~~~~~~~C~~C~~ 365 (983)
-||..|..... |+.|.-
T Consensus 181 v~H~~C~~~~~----CpkC~R 197 (202)
T PF13901_consen 181 VFHKSCFRKKS----CPKCAR 197 (202)
T ss_pred ccchhhcCCCC----CCCcHh
Confidence 88888887522 888865
No 165
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=40.04 E-value=15 Score=32.91 Aligned_cols=33 Identities=27% Similarity=0.739 Sum_probs=12.9
Q ss_pred ccccccCCCCCCCCCCCceecCC--CCCCccCcccCCc
Q 002000 695 CLLCRGCDFSKSGFGPRTILLCD--QCEREFHVGCLKK 730 (983)
Q Consensus 695 C~IC~~~dfs~sgf~~~tLL~CD--qCerayHv~CL~~ 730 (983)
|.||...-. ..+....+.|+ .|.+.||..||..
T Consensus 5 C~IC~~~~~---~~~~~p~~~C~n~~C~~~fH~~CL~~ 39 (70)
T PF11793_consen 5 CGICYSYRL---DDGEIPDVVCPNPSCGKKFHLLCLSE 39 (70)
T ss_dssp -SSS--SS----TT-----B--S-TT----B-SGGGHH
T ss_pred CCcCCcEec---CCCCcCceEcCCcccCCHHHHHHHHH
Confidence 899986532 11334578998 9999999999975
No 166
>KOG2747 consensus Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=39.31 E-value=31 Score=40.65 Aligned_cols=77 Identities=22% Similarity=0.204 Sum_probs=43.9
Q ss_pred HHHHHHHHhhhhcCCCcccCCCCCCcccchhccccCCCceEecEEEEEEEeCCeEEEEEEEEEeCCeeEE---EeeeEee
Q 002000 808 LLLSQAVAIFHDCFDPIVDSISGRDLIPSMVYGRNLRGQEFGGMYCAILTVNSSVVSAGILRVFGQEVAE---LPLVATS 884 (983)
Q Consensus 808 skLa~AL~If~EcFdPivD~~Sg~DLIp~MVy~~~~~r~df~Gfy~~VL~~~~~vVsaA~lri~g~~~AE---ip~VAT~ 884 (983)
....+-|=.|-..| +|+.| +| +|...|.-+||...|..= ++-.+--...-++ +--|=|.
T Consensus 208 k~YCQnLCLlaKLF---LdhKT--------LY------yDvdpFlFYVlte~d~~G-~VGYFSKEK~s~~~yNlaCILtL 269 (396)
T KOG2747|consen 208 KLYCQNLCLLAKLF---LDHKT--------LY------YDVDPFLFYVLTECDSYG-CVGYFSKEKESSENYNLACILTL 269 (396)
T ss_pred hHHHHHHHHHHHHH---hcCce--------eE------EeccceEEEEEEecCCcc-eeeeeccccccccccceeeeeec
Confidence 34466666666777 33321 11 355666666666543321 2211111112223 6677899
Q ss_pred cCcccCChhHHHHHHHHH
Q 002000 885 KINHGKGYFQLLFACIEK 902 (983)
Q Consensus 885 ~~~RgqG~gr~Lv~~IE~ 902 (983)
|.||++|||+.|++.==+
T Consensus 270 PpyQRkGYGklLIdFSYe 287 (396)
T KOG2747|consen 270 PPYQRKGYGKLLIDFSYE 287 (396)
T ss_pred Chhhhcccchhhhhhhhh
Confidence 999999999999985433
No 167
>PLN00104 MYST -like histone acetyltransferase; Provisional
Probab=39.04 E-value=31 Score=41.30 Aligned_cols=80 Identities=19% Similarity=0.154 Sum_probs=44.2
Q ss_pred HHHHHHHHhhhhcCCCcccCCCCCCcccchhccccCCCceEecEEEEEEEe----CCeEEEEEEEEEeCCeeEEEeeeEe
Q 002000 808 LLLSQAVAIFHDCFDPIVDSISGRDLIPSMVYGRNLRGQEFGGMYCAILTV----NSSVVSAGILRVFGQEVAELPLVAT 883 (983)
Q Consensus 808 skLa~AL~If~EcFdPivD~~Sg~DLIp~MVy~~~~~r~df~Gfy~~VL~~----~~~vVsaA~lri~g~~~AEip~VAT 883 (983)
....+-|-.|-..| +|+.|= | .|...|.-+||.. +-.+||-=+=-..-.+---|--|-|
T Consensus 252 ~~yCqnLcLlaKLF---LdhKtl--------y------ydV~~FlFYvl~e~d~~g~h~vGyFSKEk~s~~~~NLaCIlt 314 (450)
T PLN00104 252 KVYCQNLCYLAKLF---LDHKTL--------Y------YDVDLFLFYVLCECDDRGCHMVGYFSKEKHSEEDYNLACILT 314 (450)
T ss_pred hhHHHHHHHHHHHh---hcCcce--------e------ccccceEEEEEEEecCCCcEEEEEecccccCcCCCceEEEEe
Confidence 33466666777777 343321 1 2344444444442 2255553331111112123667889
Q ss_pred ecCcccCChhHHHHHHHHHHh
Q 002000 884 SKINHGKGYFQLLFACIEKLL 904 (983)
Q Consensus 884 ~~~~RgqG~gr~Lv~~IE~~l 904 (983)
.|.||++|||+.|++.-=++.
T Consensus 315 lP~yQrkGyG~~LI~~SYeLS 335 (450)
T PLN00104 315 LPPYQRKGYGKFLIAFSYELS 335 (450)
T ss_pred cchhhhcchhheehhheehhh
Confidence 999999999999998644443
No 168
>PTZ00064 histone acetyltransferase; Provisional
Probab=38.19 E-value=47 Score=40.29 Aligned_cols=84 Identities=17% Similarity=0.049 Sum_probs=46.6
Q ss_pred HHHHHHHHhhhhcCCCcccCCCCCCcccchhccccCCCceEecEEEEEEEe-C---CeEEEEEEEEEeCCeeEEEeeeEe
Q 002000 808 LLLSQAVAIFHDCFDPIVDSISGRDLIPSMVYGRNLRGQEFGGMYCAILTV-N---SSVVSAGILRVFGQEVAELPLVAT 883 (983)
Q Consensus 808 skLa~AL~If~EcFdPivD~~Sg~DLIp~MVy~~~~~r~df~Gfy~~VL~~-~---~~vVsaA~lri~g~~~AEip~VAT 883 (983)
....+-|-.|-..| +|+.|= -.|...|.-+||.. | -.+||-=+=-..-.+---|--|-|
T Consensus 330 klYCQNLCLLAKLF---LDhKTL--------------YyDVdpFlFYVLtE~D~~G~HiVGYFSKEK~S~~~nNLACILt 392 (552)
T PTZ00064 330 RGYAENLCYLAKLF---LDHKTL--------------QYDVEPFLFYIVTEVDEEGCHIVGYFSKEKVSLLHYNLACILT 392 (552)
T ss_pred hhHHHHHHHHHHHh---ccCccc--------------cccccceEEEEEEEecCCCcEEEEEecccccCcccCceEEEEe
Confidence 34466667777777 344321 12444555555542 2 244443221111111223556789
Q ss_pred ecCcccCChhHHHHHHHHHHhhhcC
Q 002000 884 SKINHGKGYFQLLFACIEKLLSFLR 908 (983)
Q Consensus 884 ~~~~RgqG~gr~Lv~~IE~~l~~lg 908 (983)
.|.|||+|||+.|++.-=++.+.-|
T Consensus 393 LPpyQRKGYGklLIdfSYeLSrrEg 417 (552)
T PTZ00064 393 LPCYQRKGYGKLLVDLSYKLSLKEG 417 (552)
T ss_pred cchhhhcchhhhhhhhhhhhhhhcC
Confidence 9999999999999987655544433
No 169
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=36.56 E-value=10 Score=29.00 Aligned_cols=40 Identities=23% Similarity=0.551 Sum_probs=27.2
Q ss_pred ccccccCC-CeeccCCCCCccCcccCC-CCCCCCCCcccccccc
Q 002000 607 CTICADGG-NLLPCDGCPRAFHKECAS-LSSIPQGDWYCKYCQN 648 (983)
Q Consensus 607 C~VC~dgG-~Ll~CD~CprafH~~Cl~-l~~vP~g~W~C~~C~~ 648 (983)
|.+|.+.- +......|...||..|+. +... +...||.|+.
T Consensus 2 C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~--~~~~Cp~C~~ 43 (45)
T cd00162 2 CPICLEEFREPVVLLPCGHVFCRSCIDKWLKS--GKNTCPLCRT 43 (45)
T ss_pred CCcCchhhhCceEecCCCChhcHHHHHHHHHh--CcCCCCCCCC
Confidence 77787654 444555699999999994 2111 4677999874
No 170
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=36.26 E-value=12 Score=44.47 Aligned_cols=42 Identities=21% Similarity=0.448 Sum_probs=28.6
Q ss_pred ccccccccc---CC-CeeccCCCCCccCcccCCCCCCCCCCccccccccc
Q 002000 604 DDLCTICAD---GG-NLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNM 649 (983)
Q Consensus 604 dd~C~VC~d---gG-~Ll~CD~CprafH~~Cl~l~~vP~g~W~C~~C~~~ 649 (983)
-..|.||.. .. ..+.---|.++||-.|+. .| ++-.||.|+..
T Consensus 175 LPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~--~w--~~~scpvcR~~ 220 (493)
T KOG0804|consen 175 LPTCPVCLERMDSSTTGILTILCNHSFHCSCLM--KW--WDSSCPVCRYC 220 (493)
T ss_pred CCCcchhHhhcCccccceeeeecccccchHHHh--hc--ccCcChhhhhh
Confidence 457999993 22 244556699999999993 11 23478888853
No 171
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=35.53 E-value=13 Score=42.00 Aligned_cols=50 Identities=18% Similarity=0.526 Sum_probs=39.2
Q ss_pred ccccccccccccCCCeeccCCCCCccCcccCC-C-CCCCCCCcccccccccccccc
Q 002000 601 KDNDDLCTICADGGNLLPCDGCPRAFHKECAS-L-SSIPQGDWYCKYCQNMFERKR 654 (983)
Q Consensus 601 ~~ndd~C~VC~dgG~Ll~CD~CprafH~~Cl~-l-~~vP~g~W~C~~C~~~~~~ek 654 (983)
++++-.|.+|.+.-.-..|.-|++-|...|+- | .+-++ ||.|+..+++.+
T Consensus 236 ~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek~e----CPlCR~~~~psk 287 (293)
T KOG0317|consen 236 PEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEKAE----CPLCREKFQPSK 287 (293)
T ss_pred CCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHccccC----CCcccccCCCcc
Confidence 46677899999998888999999999999993 2 22222 999998776544
No 172
>TIGR03244 arg_catab_AstA arginine N-succinyltransferase. In many bacteria, the arginine succinyltransferase (ast) pathway operon consists of five genes, including this protein, arginine N-succinyltransferase (EC 2.3.1.109). In a few species, such as Pseudomonas aeruginosa, the member of this family is encoded adjacent to a paralog, and the two polypeptides form a heterodimeric enzyme, active on both arginine and ornithine. In such species, this polypeptide may be treated as the beta subunit of an enzyme that may be named either arginine N-succinyltransferase (AST) or arginine and orthithine N-succinyltransferase (AOST).
Probab=35.13 E-value=71 Score=37.11 Aligned_cols=50 Identities=18% Similarity=0.111 Sum_probs=39.5
Q ss_pred ecEEEEEEEe--CCeEEEEEEEEEe-C-----------------------------------CeeEEEeeeEeecCcccC
Q 002000 849 GGMYCAILTV--NSSVVSAGILRVF-G-----------------------------------QEVAELPLVATSKINHGK 890 (983)
Q Consensus 849 ~Gfy~~VL~~--~~~vVsaA~lri~-g-----------------------------------~~~AEip~VAT~~~~Rgq 890 (983)
...|.+|||. .|+|||++.|... | .+..||-.+-.+++||+-
T Consensus 53 ~~~YlFVLEDt~tg~vvGts~I~a~vG~~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~SElctLfL~p~~R~~ 132 (336)
T TIGR03244 53 EQGYLFVLEDTETGTVAGVSAIEAAVGLEEPFYNYRVGTVVHASKELGIYKALETLFLSNDLTGYSELCTLFLDPDYRKG 132 (336)
T ss_pred CccEEEEEEeCCCCeEEEEEeEEecccCCCCCEEEEcCceeecCcccCCceeeeeEEeeccCCCCeeeEEEEECHHHcCC
Confidence 3468889986 5899999887642 2 567889999999999999
Q ss_pred ChhHHHHH
Q 002000 891 GYFQLLFA 898 (983)
Q Consensus 891 G~gr~Lv~ 898 (983)
|.|+.|-.
T Consensus 133 ~~G~LLSr 140 (336)
T TIGR03244 133 GNGRLLSK 140 (336)
T ss_pred cchhhHHH
Confidence 99977644
No 173
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=34.74 E-value=4.9 Score=37.01 Aligned_cols=31 Identities=26% Similarity=0.665 Sum_probs=23.9
Q ss_pred CCCCccCcccC-CCCCCCCCCccccccccccc
Q 002000 621 GCPRAFHKECA-SLSSIPQGDWYCKYCQNMFE 651 (983)
Q Consensus 621 ~CprafH~~Cl-~l~~vP~g~W~C~~C~~~~~ 651 (983)
.|-.+||..|+ .+-..|...-.||.|+..++
T Consensus 50 ~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 50 YCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred HHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 46788999999 35566666789999997653
No 174
>TIGR03245 arg_AOST_alph arginine/ornithine succinyltransferase, alpha subunit. In some bacteria, including Pseudomonas aeruginosa, the astB gene (arginine N-succinyltransferase) is replaced by tandem paralogs that form a heterodimer. This heterodimer from P. aeruginosa is characterized as arginine and ornithine N-2 succinyltransferase (AOST). Members of this protein family represent the less widespread paralog, designated AruI, or arginine/ornithine succinyltransferase, alpha subunit.
Probab=34.55 E-value=69 Score=37.20 Aligned_cols=50 Identities=12% Similarity=0.016 Sum_probs=39.6
Q ss_pred ecEEEEEEEe--CCeEEEEEEEEEe-C-----------------------------------CeeEEEeeeEeecCcccC
Q 002000 849 GGMYCAILTV--NSSVVSAGILRVF-G-----------------------------------QEVAELPLVATSKINHGK 890 (983)
Q Consensus 849 ~Gfy~~VL~~--~~~vVsaA~lri~-g-----------------------------------~~~AEip~VAT~~~~Rgq 890 (983)
...|.+|||. .|+|||++.|... | .+..||--+-.+++||+-
T Consensus 54 ~~~YlFVLEDt~tg~vvGts~I~a~vG~~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfL~p~~R~~ 133 (336)
T TIGR03245 54 EERYLFVLEDTETGKLLGTSSIVASAGYGEPFYSYRNDTLIHASRELKVNNKIHVLYMCHELTGSSLLCSFYVDPRLRKT 133 (336)
T ss_pred CccEEEEEEeCCCCcEEEEEeEEecccCCCCCEEEEcCceeecCcccCCccceeeEEeeccCCCCeeeEEEEECHHHcCC
Confidence 3468889995 5899999887642 2 567899999999999999
Q ss_pred ChhHHHHH
Q 002000 891 GYFQLLFA 898 (983)
Q Consensus 891 G~gr~Lv~ 898 (983)
|.|+.|-.
T Consensus 134 ~~G~lLSr 141 (336)
T TIGR03245 134 EAAELLSR 141 (336)
T ss_pred CchhHHHH
Confidence 99977643
No 175
>TIGR03243 arg_catab_AOST arginine and ornithine succinyltransferase subunits. In many bacteria, the sole member of this protein family is arginine N-succinyltransferase (EC 2.3.1.109), the AstA protein of the arginine succinyltransferase (ast) pathway. However, in Pseudomonas aeruginosa and several other species, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST).
Probab=33.77 E-value=74 Score=36.97 Aligned_cols=50 Identities=18% Similarity=0.112 Sum_probs=39.8
Q ss_pred ecEEEEEEEe--CCeEEEEEEEEEe-C-----------------------------------CeeEEEeeeEeecCcccC
Q 002000 849 GGMYCAILTV--NSSVVSAGILRVF-G-----------------------------------QEVAELPLVATSKINHGK 890 (983)
Q Consensus 849 ~Gfy~~VL~~--~~~vVsaA~lri~-g-----------------------------------~~~AEip~VAT~~~~Rgq 890 (983)
...|.+|||. .|+|||++.|... | .+..||-.+-.+++||+-
T Consensus 53 ~~~YlFVLED~~tg~vvGts~I~a~vG~~~PfY~yrv~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfL~p~~R~~ 132 (335)
T TIGR03243 53 EEGYLFVLEDTETGTVAGVSAIEAAVGLDEPFYNYRVGTLVHASRELGVYNKIPTLTLSNDLTGSSELCTLFLDPDYRKG 132 (335)
T ss_pred CccEEEEEEeCCCCeEEEEEeEEecccCCCCCEEEEcCceeecCcccCCccceeeEEeeccCCCCeeeEEEEECHHHcCC
Confidence 4568899995 5899999887642 2 567899999999999999
Q ss_pred ChhHHHHH
Q 002000 891 GYFQLLFA 898 (983)
Q Consensus 891 G~gr~Lv~ 898 (983)
|.|+.|-.
T Consensus 133 ~~G~LLSr 140 (335)
T TIGR03243 133 GNGRLLSR 140 (335)
T ss_pred CchhhHHH
Confidence 99977644
No 176
>PRK10456 arginine succinyltransferase; Provisional
Probab=33.38 E-value=71 Score=37.23 Aligned_cols=50 Identities=20% Similarity=0.102 Sum_probs=39.4
Q ss_pred ecEEEEEEEe--CCeEEEEEEEEEe-C-----------------------------------CeeEEEeeeEeecCcccC
Q 002000 849 GGMYCAILTV--NSSVVSAGILRVF-G-----------------------------------QEVAELPLVATSKINHGK 890 (983)
Q Consensus 849 ~Gfy~~VL~~--~~~vVsaA~lri~-g-----------------------------------~~~AEip~VAT~~~~Rgq 890 (983)
...|.+|||. .|+|||++.|... | .+..||--+-.+++||+-
T Consensus 55 ~~~YlFVLED~~tg~vvGts~I~a~vG~~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfl~p~~R~~ 134 (344)
T PRK10456 55 EQGYVFVLEDSETGTVAGICAIEVAVGLNDPWYNYRVGTLVHASKELNVYNALPTLFLSNDHTGSSELCTLFLDPDWRKE 134 (344)
T ss_pred CccEEEEEEeCCCCcEEEEEeEEecccCCCCCEEEEcCceeecCcccCCceeeeeEEeeccCCCCceeEEEEECHHHcCC
Confidence 4468889995 5899999887642 2 567889999999999999
Q ss_pred ChhHHHHH
Q 002000 891 GYFQLLFA 898 (983)
Q Consensus 891 G~gr~Lv~ 898 (983)
|.|+.|-.
T Consensus 135 ~~G~LLSr 142 (344)
T PRK10456 135 GNGYLLSK 142 (344)
T ss_pred CchhHHHH
Confidence 99977644
No 177
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=33.18 E-value=8 Score=51.06 Aligned_cols=51 Identities=33% Similarity=0.694 Sum_probs=32.3
Q ss_pred CccccccccccccCCC-eecc--CCCCCccCcccCC--CC------CCCCCCcccccccccc
Q 002000 600 GKDNDDLCTICADGGN-LLPC--DGCPRAFHKECAS--LS------SIPQGDWYCKYCQNMF 650 (983)
Q Consensus 600 ~~~ndd~C~VC~dgG~-Ll~C--D~CprafH~~Cl~--l~------~vP~g~W~C~~C~~~~ 650 (983)
..+.||+|.||-...- ..-| -+|.+.||+.|.. ++ .+.-|--.||.|.+++
T Consensus 3482 kQD~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~I 3543 (3738)
T KOG1428|consen 3482 KQDADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKI 3543 (3738)
T ss_pred hcccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchh
Confidence 3567888988874311 1122 2599999999983 21 2222445899999874
No 178
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=31.95 E-value=21 Score=33.93 Aligned_cols=29 Identities=41% Similarity=0.980 Sum_probs=25.0
Q ss_pred cccccccccc-CCCeeccCC--CCCccCcccC
Q 002000 603 NDDLCTICAD-GGNLLPCDG--CPRAFHKECA 631 (983)
Q Consensus 603 ndd~C~VC~d-gG~Ll~CD~--CprafH~~Cl 631 (983)
....|.+|+. .|-.+-|.. |..+||..|.
T Consensus 54 ~~~~C~iC~~~~G~~i~C~~~~C~~~fH~~CA 85 (110)
T PF13832_consen 54 FKLKCSICGKSGGACIKCSHPGCSTAFHPTCA 85 (110)
T ss_pred cCCcCcCCCCCCceeEEcCCCCCCcCCCHHHH
Confidence 3568999997 577889987 9999999998
No 179
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=30.52 E-value=19 Score=39.40 Aligned_cols=54 Identities=17% Similarity=0.212 Sum_probs=38.9
Q ss_pred ccccccccccccCCCeeccCCCCCccCcccC-CCCCCCCCCcccccccccccccc
Q 002000 601 KDNDDLCTICADGGNLLPCDGCPRAFHKECA-SLSSIPQGDWYCKYCQNMFERKR 654 (983)
Q Consensus 601 ~~ndd~C~VC~dgG~Ll~CD~CprafH~~Cl-~l~~vP~g~W~C~~C~~~~~~ek 654 (983)
+.+.-.|.||.|.-+--.-.-|++-|...|+ .|..+....-.||.|+..+..++
T Consensus 44 ~~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~ 98 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDT 98 (230)
T ss_pred CCCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccce
Confidence 4556679999987554444457888888888 47677777789999998765443
No 180
>KOG2779 consensus N-myristoyl transferase [Lipid transport and metabolism]
Probab=29.99 E-value=2.7e+02 Score=32.82 Aligned_cols=126 Identities=17% Similarity=0.247 Sum_probs=84.3
Q ss_pred CceeEEccCCCCChhhHHHHHHHHHhhhhcCCCcccCCCCCCcccchhcccc-----CCCceEecEEEEEEEeCC--eEE
Q 002000 791 DVRWRLLSGKAATPETRLLLSQAVAIFHDCFDPIVDSISGRDLIPSMVYGRN-----LRGQEFGGMYCAILTVNS--SVV 863 (983)
Q Consensus 791 ~i~W~lL~gk~~s~e~~skLa~AL~If~EcFdPivD~~Sg~DLIp~MVy~~~-----~~r~df~Gfy~~VL~~~~--~vV 863 (983)
.++|..+- -.+...|.+-.+.+.|-+.--. |.....=|..+ +..-++.--|++.+.+.+ ++|
T Consensus 80 gf~W~tld-----v~~~~~l~el~~lL~enyVEd~------~~m~rf~Ys~eFl~Wal~~pg~~~~WHiGVRv~~s~kLV 148 (421)
T KOG2779|consen 80 GFRWETLD-----VSDFKDLEELYNLLNENYVEDD------DSMFRFDYSPEFLKWALQPPGWKKEWHIGVRVKSSKKLV 148 (421)
T ss_pred CceeeccC-----CccHhHHHHHHhhcccCCCCcc------ccchhhhccHHHHHhhhcCCCCccceEEEEEEecCCceE
Confidence 58887763 2233446666667777653222 22222223333 344556667888877654 666
Q ss_pred EE-----EEEEEeCC--eeEEEeeeEeecCcccCChhHHHHHHHHHHhhhcCcc------EEEecchhhhHHHHHhc
Q 002000 864 SA-----GILRVFGQ--EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVK------SIVLPAAEEAESIWTDK 927 (983)
Q Consensus 864 sa-----A~lri~g~--~~AEip~VAT~~~~RgqG~gr~Lv~~IE~~l~~lgV~------~LvLpA~~~A~~~w~~k 927 (983)
|- ++|||.+. ..+||-++.+++..|++++.=.|+..|-+...--||- -++||+-...-.-|.+.
T Consensus 149 aFIsaiP~~irvrdk~vk~veINFLCVHKkLRSKRlaPvLIrEITRRvnl~gIfqA~yTaGvvLp~PVstcRY~HRs 225 (421)
T KOG2779|consen 149 AFISAIPATIRVRDKVVKMVEINFLCVHKKLRSKRLAPVLIREITRRVNLEGIFQAAYTAGVVLPKPVSTCRYWHRS 225 (421)
T ss_pred EEEeccccEEEEccceeeeeeEEEEEEehhhhccccccHHHHHHHHHhhhhhhhhHhhhcceeeccccchhhhhhcc
Confidence 63 67888886 6999999999999999999999999998876555553 36777776666677663
No 181
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=29.82 E-value=35 Score=44.31 Aligned_cols=47 Identities=36% Similarity=0.978 Sum_probs=37.6
Q ss_pred ccccccccccCCC--eeccCCCCCccCcccCC--CCCCCCCCccccccccc
Q 002000 603 NDDLCTICADGGN--LLPCDGCPRAFHKECAS--LSSIPQGDWYCKYCQNM 649 (983)
Q Consensus 603 ndd~C~VC~dgG~--Ll~CD~CprafH~~Cl~--l~~vP~g~W~C~~C~~~ 649 (983)
....|..|..+.. ++.|++|...||..|.. ++.+++|+|.|+.|...
T Consensus 154 ~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (904)
T KOG1246|consen 154 DYPQCNTCSKGKEEKLLLCDSCDDSYHTYCLRPPLTRVPDGDWRCPKCIPT 204 (904)
T ss_pred cchhhhccccCCCccceecccccCcccccccCCCCCcCCcCcccCCccccc
Confidence 3456778875543 33999999999999994 78899999999999654
No 182
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=29.72 E-value=17 Score=38.99 Aligned_cols=50 Identities=20% Similarity=0.286 Sum_probs=34.1
Q ss_pred cccccccccccCCCeeccCCCCCccCcccCC-CCC-------------CCCCCccccccccccc
Q 002000 602 DNDDLCTICADGGNLLPCDGCPRAFHKECAS-LSS-------------IPQGDWYCKYCQNMFE 651 (983)
Q Consensus 602 ~ndd~C~VC~dgG~Ll~CD~CprafH~~Cl~-l~~-------------vP~g~W~C~~C~~~~~ 651 (983)
..+-.|.||.+.-.-.....|.+.|+..|+. |.. ...+...||.|+..+.
T Consensus 16 ~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is 79 (193)
T PLN03208 16 GGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVS 79 (193)
T ss_pred CCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCC
Confidence 3456799999865544445799999999993 211 0224578999997654
No 183
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=28.41 E-value=34 Score=40.53 Aligned_cols=188 Identities=21% Similarity=0.249 Sum_probs=95.3
Q ss_pred cccccccchhhHHhhhcccccceeEEeEEeeEEEEEEeccCCCCCCcccccchhhhhhhhcccccchHHHHHHHhhhccc
Q 002000 21 LPQAGIQASDCVKAACENVRCKRFKVTKVNGFIVYSRVKRSRFSNSDDLLEDDVIDKRINSKIHEGRINKVVKNVLNENG 100 (983)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (983)
|-+.|++ |||+-. .-.+|+|+-+|--=+.-.-+-...-.++|+- -...|.||..|-+.+..
T Consensus 97 L~~LGl~--Dcve~I---------DAQ~v~Gy~ifk~gk~v~~pyP~~~f~~d~~----GrsFhnGRFvq~lR~ka---- 157 (509)
T KOG1298|consen 97 LSKLGLE--DCVEGI---------DAQRVTGYAIFKDGKEVDLPYPLKNFPSDPS----GRSFHNGRFVQRLRKKA---- 157 (509)
T ss_pred HHHhCHH--HHhhcc---------cceEeeeeEEEeCCceeeccCCCcCCCCCcc----cceeeccHHHHHHHHHH----
Confidence 3444554 888643 3456899999964333332222222345543 44689999999887732
Q ss_pred chhhhHHhhh-hhhcchHHHHHHHHhhCCCCCCccCCCCCccceeecCCCCcccc--cCCccc-----ccccccccCCCC
Q 002000 101 ILESVVEEEN-QLVQMTVENVIEETVKGKKAPICKEEPISKVECFPRKEGGSEVS--NGLNKK-----CLKRPSAMKPKV 172 (983)
Q Consensus 101 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-----~~~trs~lk~k~ 172 (983)
..++| ++.|=||..++| ||+.-+- |-..|.+|-+.. +++.-- -+|+||+-++||
T Consensus 158 -----~slpNV~~eeGtV~sLle------------e~gvvkG-V~yk~k~gee~~~~ApLTvVCDGcfSnlRrsL~~~~v 219 (509)
T KOG1298|consen 158 -----ASLPNVRLEEGTVKSLLE------------EEGVVKG-VTYKNKEGEEVEAFAPLTVVCDGCFSNLRRSLCDPKV 219 (509)
T ss_pred -----hcCCCeEEeeeeHHHHHh------------ccCeEEe-EEEecCCCceEEEecceEEEecchhHHHHHHhcCCcc
Confidence 12222 222335544443 3332111 223333333333 344321 478899999999
Q ss_pred Cccccccccc--cCCCCC--------------------ccchhhHhhhhcCCCCCCCCcccccccc-cccccCCCCcchh
Q 002000 173 EPVEVLVTQS--EGFGNE--------------------SMSLIEVEAIAEGSALTSPKKNLELKMS-KKISLNKKPMTVT 229 (983)
Q Consensus 173 e~~~~~~~~~--e~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~k~~-kk~~~~~~p~~vk 229 (983)
+++.+.-.+. ++-+.+ ++++++-.. +-++..-|+-.+.|||.. |+..--.+|..+|
T Consensus 220 ~~V~S~fVG~vl~N~~l~~p~hghvIL~~pspil~Y~ISStEvRcl~-~v~g~~~Psi~~gem~~~mk~~v~PqiP~~lR 298 (509)
T KOG1298|consen 220 EEVPSYFVGLVLKNCRLPAPNHGHVILSKPSPILVYQISSTEVRCLV-DVPGQKLPSIANGEMATYMKESVAPQIPEKLR 298 (509)
T ss_pred cccchheeeeeecCCCCCCCCcceEEecCCCcEEEEEecchheEEEE-ecCcccCCcccchhHHHHHHHhhCcCCCHHHH
Confidence 9765433221 111000 000111000 012333455567676543 4444556899999
Q ss_pred hhhhcCCcCCc----eEEEec
Q 002000 230 ELFETGLLDGV----SVVYMG 246 (983)
Q Consensus 230 ~Ll~tg~leg~----~V~Y~~ 246 (983)
+-+..++=+|. |-+||.
T Consensus 299 ~~F~~av~~g~irsmpn~~mp 319 (509)
T KOG1298|consen 299 ESFLEAVDEGNIRSMPNSSMP 319 (509)
T ss_pred HHHHHHhhccchhcCccccCC
Confidence 98877666654 555553
No 184
>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only]
Probab=28.22 E-value=32 Score=39.98 Aligned_cols=43 Identities=21% Similarity=0.484 Sum_probs=33.6
Q ss_pred ceecCCCCCCccCccc--CCcccCCccccCCCCCeEecCCchhhHHHHH
Q 002000 712 TILLCDQCEREFHVGC--LKKHKMADLRELPKGKWFCCMDCSRINSVLQ 758 (983)
Q Consensus 712 tLL~CDqCerayHv~C--L~~~~m~~LkelP~g~WfC~~~C~~I~~~Lq 758 (983)
.++.|+.|..|||..| +.. ......+...|+| ..|......++
T Consensus 74 ~~~~cd~C~~~~~~ec~~v~~---~~~e~p~~~~~~c-~~c~~~~~~~~ 118 (345)
T KOG1632|consen 74 LMEQCDLCEDWYHGECWEVGT---AEKEAPKEDPKVC-DECKEAQDGMS 118 (345)
T ss_pred hhhccccccccccccccccCc---hhhcCCccccccc-cccchhhhhhh
Confidence 6789999999999999 654 3344455678999 89988876655
No 185
>PF10080 DUF2318: Predicted membrane protein (DUF2318); InterPro: IPR018758 This domain of unknown function is found in hypothetical bacterial membrane proteins with no known function.
Probab=27.77 E-value=92 Score=30.32 Aligned_cols=70 Identities=29% Similarity=0.589 Sum_probs=47.6
Q ss_pred CCCccceeeeeccCCCCCCCeEEEee----CcE----------Eeecce-ecCCCeeecCCCCccCcccee-eccCccCC
Q 002000 507 PKDQRLHKLVFDESGLPDGTEVGYYA----CGQ----------KLLEGY-KNGLGIICHCCNSEVSPSQFE-AHAGWSSR 570 (983)
Q Consensus 507 ~rd~~lhkllF~~~gL~dGtkV~Yy~----~gq----------~ll~G~-~~g~GI~C~CC~~~~SpSeFE-~HAG~~sr 570 (983)
..|..||+--+.. +|++|.+.. .|. .--.|| ++++.+.|.-|+..++...+. ...|+
T Consensus 2 v~Dgklh~y~y~~----~G~~vrff~i~~~dg~~~va~daCeiC~~~GY~q~g~~lvC~~C~~~~~~~~ig~~~GGC--- 74 (102)
T PF10080_consen 2 VKDGKLHRYAYTD----DGKEVRFFAIKKPDGSYRVAFDACEICGPKGYYQEGDQLVCKNCGVRFNLPTIGGKSGGC--- 74 (102)
T ss_pred ccCCcEEEEEEcC----CCEEEEEEEEECCCCCEEEEEEeccccCCCceEEECCEEEEecCCCEEehhhcccccCCC---
Confidence 3578888888744 678877664 121 223466 577789999999999998888 66664
Q ss_pred CCCcceEEccCCCc
Q 002000 571 RKPYAHIYTSNGVS 584 (983)
Q Consensus 571 rkPy~~I~lsnG~S 584 (983)
||+.--|.-+|-.
T Consensus 75 -NP~P~~~~~~~~~ 87 (102)
T PF10080_consen 75 -NPIPLPYTVDGGN 87 (102)
T ss_pred -CccCCceEecCCe
Confidence 6666555555543
No 186
>TIGR02174 CXXU_selWTH selT/selW/selH selenoprotein domain. This model represents a domain found in both bacteria and animals, including animal proteins SelT, SelW, and SelH, all of which are selenoproteins. In a CXXC motif near the N-terminus of the domain, selenocysteine may replace the second Cys. Proteins with this domain may include an insert of about 70 amino acids. This model is broader than the current SelW model pfam05169 in Pfam.
Probab=27.53 E-value=41 Score=30.20 Aligned_cols=29 Identities=34% Similarity=0.680 Sum_probs=23.8
Q ss_pred ccceeEEeEEeeEEEEEEeccCCCCCCccc
Q 002000 40 RCKRFKVTKVNGFIVYSRVKRSRFSNSDDL 69 (983)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (983)
+=-.|.|+ |||-+||||++..+|-..+.|
T Consensus 39 ~~G~Fev~-~~g~~v~sk~~~~~fp~~~~~ 67 (72)
T TIGR02174 39 TTGAFEVT-VNGQLVWSKLRGGGFPEPEEL 67 (72)
T ss_pred CCcEEEEE-ECCEEEEEeccCCCCCCHHHH
Confidence 44579997 799999999999998876654
No 187
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=27.49 E-value=11 Score=27.67 Aligned_cols=38 Identities=24% Similarity=0.555 Sum_probs=23.7
Q ss_pred ccccccCCCeeccCCCCCccCcccCC-CCCCCCCCcccccc
Q 002000 607 CTICADGGNLLPCDGCPRAFHKECAS-LSSIPQGDWYCKYC 646 (983)
Q Consensus 607 C~VC~dgG~Ll~CD~CprafH~~Cl~-l~~vP~g~W~C~~C 646 (983)
|.+|.+......-..|...||..|+. +.. .+...||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~--~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLK--SGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHH--hCcCCCCCC
Confidence 66777765555555799999999984 211 233446654
No 188
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=27.15 E-value=19 Score=44.31 Aligned_cols=38 Identities=34% Similarity=0.838 Sum_probs=27.8
Q ss_pred CCCCCceecCCCCCCccCcccCCcccCCccccCCCCCeEecCCchhhHHH
Q 002000 707 GFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCSRINSV 756 (983)
Q Consensus 707 gf~~~tLL~CDqCerayHv~CL~~~~m~~LkelP~g~WfC~~~C~~I~~~ 756 (983)
.|..++...|+.|...||..|+.... + ||+.|.++...
T Consensus 525 PF~~~~~~rC~~C~avfH~~C~~r~s-------~-----~CPrC~R~q~r 562 (580)
T KOG1829|consen 525 PFETRNTRRCSTCLAVFHKKCLRRKS-------P-----CCPRCERRQKR 562 (580)
T ss_pred ccccccceeHHHHHHHHHHHHHhccC-------C-----CCCchHHHHHH
Confidence 34566789999999999999997632 1 23788776543
No 189
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=26.19 E-value=18 Score=40.56 Aligned_cols=49 Identities=20% Similarity=0.504 Sum_probs=30.9
Q ss_pred ccccccccccccCCC----------eeccCCCCCccCcccC-CCCCCCCCCcccccccccc
Q 002000 601 KDNDDLCTICADGGN----------LLPCDGCPRAFHKECA-SLSSIPQGDWYCKYCQNMF 650 (983)
Q Consensus 601 ~~ndd~C~VC~dgG~----------Ll~CD~CprafH~~Cl-~l~~vP~g~W~C~~C~~~~ 650 (983)
.-+|..|.||+..=+ -..=-.|.+.||..|+ ++--+ ...-.||.|+.++
T Consensus 221 hl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWciv-GKkqtCPYCKekV 280 (328)
T KOG1734|consen 221 HLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIV-GKKQTCPYCKEKV 280 (328)
T ss_pred CCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheee-cCCCCCchHHHHh
Confidence 356779999994311 1122359999999999 33222 1234799998654
No 190
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=24.97 E-value=33 Score=31.37 Aligned_cols=28 Identities=39% Similarity=0.962 Sum_probs=24.6
Q ss_pred cccccccccC-CCeeccCC--CCCccCcccC
Q 002000 604 DDLCTICADG-GNLLPCDG--CPRAFHKECA 631 (983)
Q Consensus 604 dd~C~VC~dg-G~Ll~CD~--CprafH~~Cl 631 (983)
...|.+|+.. |-.+-|.. |.+.||..|.
T Consensus 36 ~~~C~~C~~~~Ga~i~C~~~~C~~~fH~~CA 66 (90)
T PF13771_consen 36 KLKCSICKKKGGACIGCSHPGCSRSFHVPCA 66 (90)
T ss_pred CCCCcCCCCCCCeEEEEeCCCCCcEEChHHH
Confidence 4579999988 88888865 9999999998
No 191
>COG5027 SAS2 Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=24.72 E-value=44 Score=38.79 Aligned_cols=54 Identities=17% Similarity=0.112 Sum_probs=32.1
Q ss_pred ceEecEEEEEEEeCCe----EEEEEEEEEeCCeeEEEeeeEeecCcccCChhHHHHHH
Q 002000 846 QEFGGMYCAILTVNSS----VVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFAC 899 (983)
Q Consensus 846 ~df~Gfy~~VL~~~~~----vVsaA~lri~g~~~AEip~VAT~~~~RgqG~gr~Lv~~ 899 (983)
+|..+|--+||+..|. +||-=+=--.-.+---+--|-|.|.|||+|||..|++.
T Consensus 229 yDVDpflFYvl~~~~~~~~h~vGyFSKEK~S~~~yNLaCILtLP~yQRrGYG~lLIdF 286 (395)
T COG5027 229 YDVDPFLFYVLTERGDTGCHLVGYFSKEKESEQDYNLACILTLPPYQRRGYGKLLIDF 286 (395)
T ss_pred EeccceEEEEEEEcCCcceeeeeeechhhcccccCceEEEEecChhHhcccceEeeee
Confidence 4666666666665443 33322211111222335567899999999999998863
No 192
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=23.43 E-value=61 Score=34.75 Aligned_cols=35 Identities=31% Similarity=0.719 Sum_probs=27.0
Q ss_pred ccccccCCCCCCCCCCCceecCCCCCCccCcccCCc
Q 002000 695 CLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKK 730 (983)
Q Consensus 695 C~IC~~~dfs~sgf~~~tLL~CDqCerayHv~CL~~ 730 (983)
|.+|+..+ -.=+|+..+...|..|..-||..|...
T Consensus 155 Ce~C~~~~-~IfPF~~~~~~~C~~C~~v~H~~C~~~ 189 (202)
T PF13901_consen 155 CEICNSDD-IIFPFQIDTTVRCPKCKSVFHKSCFRK 189 (202)
T ss_pred CccCCCCC-CCCCCCCCCeeeCCcCccccchhhcCC
Confidence 88888653 223456668899999999999999963
No 193
>PF10262 Rdx: Rdx family; InterPro: IPR011893 This entry represents the Rdx family of selenoproteins, which includes mammalian selenoproteins SelW, SelV, SelT and SelH, bacterial SelW-like proteins and cysteine-containing proteins of unknown function in all three domains of life. Mammalian Rdx12 and its fish selenoprotein orthologues are also members of this family []. These proteins possess a thioredoxin-like fold and a conserved CXXC or CxxU (U is selenocysteine) motif near the N terminus, suggesting a redox function. Rdx proteins can use catalytic cysteine (or selenocysteine) to form transient mixed disulphides with substrate proteins. Selenium (Se) plays an essential role in cell survival and most of the effects of Se are probably mediated by selenoproteins. Selenoprotein W (SelW) plays an important role in protection of neurons from oxidative stress during neuronal development [], []. Selenoprotein T (SelT) is conserved from plants to humans. SelT is localized to the endoplasmic reticulum through a hydrophobic domain. The protein binds to UDP-glucose:glycoprotein glucosyltransferase (UGTR), the endoplasmic reticulum (ER)-resident protein, which is known to be involved in the quality control of protein folding [, ]. The function of SelT is unknown, although it may have a role in PACAP signaling during PC12 cell differentiation [, ]. Selenoprotein H (SelH) protects neurons against UVB-induced damage by inhibiting apoptotic cell death pathways, by preventing mitochondrial depolarization, and by promoting cell survival pathways [].; GO: 0008430 selenium binding, 0045454 cell redox homeostasis; PDB: 2OJL_B 2FA8_A 2P0G_C 2NPB_A 3DEX_C 2OKA_A 2OBK_G.
Probab=23.34 E-value=23 Score=31.88 Aligned_cols=27 Identities=37% Similarity=0.778 Sum_probs=21.0
Q ss_pred cceeEEeEEeeEEEEEEeccCCCCCCcc
Q 002000 41 CKRFKVTKVNGFIVYSRVKRSRFSNSDD 68 (983)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (983)
=-.|.|+ |||-+|||++...+|-+.+.
T Consensus 42 ~G~FEV~-v~g~lI~SK~~~g~fP~~~~ 68 (76)
T PF10262_consen 42 TGAFEVT-VNGELIFSKLESGRFPDPDE 68 (76)
T ss_dssp TT-EEEE-ETTEEEEEHHHHTSSS-HHH
T ss_pred CCEEEEE-EccEEEEEehhcCCCCCHHH
Confidence 3469985 89999999999998887655
No 194
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=23.02 E-value=23 Score=39.60 Aligned_cols=52 Identities=21% Similarity=0.491 Sum_probs=39.0
Q ss_pred ccccccccccccCCCeeccCCCCCccCcccCCCCCCCCCC-ccccccccccccc
Q 002000 601 KDNDDLCTICADGGNLLPCDGCPRAFHKECASLSSIPQGD-WYCKYCQNMFERK 653 (983)
Q Consensus 601 ~~ndd~C~VC~dgG~Ll~CD~CprafH~~Cl~l~~vP~g~-W~C~~C~~~~~~e 653 (983)
+..|..|.+|.+.-.-..|-.|++.|...|+-.. +.... -+||.|+....+.
T Consensus 212 p~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~-~t~~k~~~CplCRak~~pk 264 (271)
T COG5574 212 PLADYKCFLCLEEPEVPSCTPCGHLFCLSCLLIS-WTKKKYEFCPLCRAKVYPK 264 (271)
T ss_pred cccccceeeeecccCCcccccccchhhHHHHHHH-HHhhccccCchhhhhccch
Confidence 3567889999999999999999999999999421 22222 3699999765443
No 195
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=22.54 E-value=34 Score=25.63 Aligned_cols=27 Identities=22% Similarity=0.566 Sum_probs=11.7
Q ss_pred ccccccCCCCCCCCCCCceecCCCCCCccCccc
Q 002000 695 CLLCRGCDFSKSGFGPRTILLCDQCEREFHVGC 727 (983)
Q Consensus 695 C~IC~~~dfs~sgf~~~tLL~CDqCerayHv~C 727 (983)
|.+|+... +......|.+|+-..|..|
T Consensus 3 C~~C~~~~------~~~~~Y~C~~Cdf~lH~~C 29 (30)
T PF07649_consen 3 CDACGKPI------DGGWFYRCSECDFDLHEEC 29 (30)
T ss_dssp -TTTS----------S--EEE-TTT-----HHH
T ss_pred CCcCCCcC------CCCceEECccCCCccChhc
Confidence 77888654 2246889999999999987
No 196
>PF05301 Mec-17: Touch receptor neuron protein Mec-17; InterPro: IPR007965 Mec-17 is the protein product of one of the 18 genes required for the development and function of the touch receptor neuron for gentle touch. Mec-17 is specifically required for maintaining the differentiation of the touch receptor []. This family is conserved to higher eukaryotes.; GO: 0019799 tubulin N-acetyltransferase activity
Probab=21.82 E-value=67 Score=32.16 Aligned_cols=48 Identities=13% Similarity=0.263 Sum_probs=29.7
Q ss_pred eecCcccCChhHHHHHHHHHHhhhcCccEEEecch-hhhHHHHHhccCcE
Q 002000 883 TSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAA-EEAESIWTDKFGFK 931 (983)
Q Consensus 883 T~~~~RgqG~gr~Lv~~IE~~l~~lgV~~LvLpA~-~~A~~~w~~kfGF~ 931 (983)
|.+..||+|+|++|++++.+.-. +....+.++-- +....|..+-+|-+
T Consensus 54 Vhes~QR~G~Gk~LF~~ML~~e~-~~p~~~a~DrPS~Kll~Fl~Khy~L~ 102 (120)
T PF05301_consen 54 VHESRQRRGYGKRLFDHMLQEEN-VSPHQLAIDRPSPKLLSFLKKHYGLQ 102 (120)
T ss_pred EEeceeccCchHHHHHHHHHHcC-CCcccceecCCcHHHHHHHHHhcCCC
Confidence 78999999999999998877632 22223333322 23455555545544
No 197
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=21.70 E-value=1.3e+02 Score=33.17 Aligned_cols=43 Identities=9% Similarity=0.159 Sum_probs=39.7
Q ss_pred ChhHHHHHHHHHHhhhcCccEEEecchhhhHHHHHhccCcEEcC
Q 002000 891 GYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKID 934 (983)
Q Consensus 891 G~gr~Lv~~IE~~l~~lgV~~LvLpA~~~A~~~w~~kfGF~~v~ 934 (983)
|-...|+..++++|+..|..+|++-+..++.+.|.+ .||...+
T Consensus 21 ~~~~~~~~~~~~~a~~~~~~ki~~~~~~~~~~~~~~-~g~~~e~ 63 (266)
T TIGR03827 21 NDVEALIPDLDALAKKEGYTKIIAKVPGSDKPLFEE-RGYLEEA 63 (266)
T ss_pred ccHHHHHHHHHHHHHHcCCcEEEEEccHHHHHHHHH-CCCeEEE
Confidence 447899999999999999999999999999999999 9999873
No 198
>PLN02400 cellulose synthase
Probab=21.17 E-value=77 Score=41.84 Aligned_cols=50 Identities=26% Similarity=0.759 Sum_probs=38.8
Q ss_pred cccccccccccC------CC-eeccCCCCCccCcccCCCCCCCCCCcccccccccccc
Q 002000 602 DNDDLCTICADG------GN-LLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMFER 652 (983)
Q Consensus 602 ~ndd~C~VC~dg------G~-Ll~CD~CprafH~~Cl~l~~vP~g~W~C~~C~~~~~~ 652 (983)
.+...|.||+|. |+ .+-|..|.-.-...|+.. +..+|.=.||.|+-.+.+
T Consensus 34 ~~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEY-ERkeGnq~CPQCkTrYkR 90 (1085)
T PLN02400 34 LNGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEY-ERKDGTQCCPQCKTRYRR 90 (1085)
T ss_pred cCCceeeecccccCcCCCCCEEEEEccCCCccccchhhe-ecccCCccCcccCCcccc
Confidence 356799999963 33 678999998888888843 456788999999876653
No 199
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.61 E-value=19 Score=42.04 Aligned_cols=43 Identities=35% Similarity=0.685 Sum_probs=30.0
Q ss_pred ccccccccC----CCeeccCCCCCccCcccCCCCCCCCC-Cc--cccccccc
Q 002000 605 DLCTICADG----GNLLPCDGCPRAFHKECASLSSIPQG-DW--YCKYCQNM 649 (983)
Q Consensus 605 d~C~VC~dg----G~Ll~CD~CprafH~~Cl~l~~vP~g-~W--~C~~C~~~ 649 (983)
..|.||-|+ .++.--..|++.||..|+. .|.++ .| -||.|+..
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~--qwfe~~Ps~R~cpic~ik 54 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLT--QWFEGDPSNRGCPICQIK 54 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHH--HHHccCCccCCCCceeec
Confidence 469999765 2355566799999999993 33333 24 69999843
No 200
>PHA02926 zinc finger-like protein; Provisional
Probab=20.17 E-value=44 Score=36.72 Aligned_cols=49 Identities=20% Similarity=0.495 Sum_probs=32.5
Q ss_pred cccccccccccC-------CC--eeccCCCCCccCcccCC-CCCC---CCCCcccccccccc
Q 002000 602 DNDDLCTICADG-------GN--LLPCDGCPRAFHKECAS-LSSI---PQGDWYCKYCQNMF 650 (983)
Q Consensus 602 ~ndd~C~VC~dg-------G~--Ll~CD~CprafH~~Cl~-l~~v---P~g~W~C~~C~~~~ 650 (983)
..+..|++|.+. ++ ...-..|.++|+..|+. |... ..+...||.|+..+
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f 229 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRF 229 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCccee
Confidence 346789999963 11 22345799999999994 4322 22457899999754
Done!