Query 002001
Match_columns 983
No_of_seqs 361 out of 1369
Neff 6.5
Searched_HMMs 46136
Date Thu Mar 28 14:16:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002001.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002001hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0443 Actin regulatory prote 100.0 1E-221 2E-226 1892.4 73.6 817 1-983 1-827 (827)
2 KOG0444 Cytoskeletal regulator 100.0 4E-101 8E-106 862.9 18.8 689 13-724 495-1252(1255)
3 KOG0445 Actin regulatory prote 100.0 1.3E-96 3E-101 828.9 27.5 614 138-983 223-919 (919)
4 KOG0443 Actin regulatory prote 100.0 1.6E-62 3.4E-67 569.4 33.4 316 13-348 396-720 (827)
5 KOG0444 Cytoskeletal regulator 100.0 2.9E-46 6.4E-51 421.0 16.9 320 392-725 501-838 (1255)
6 KOG0445 Actin regulatory prote 100.0 4.4E-40 9.5E-45 372.3 17.5 333 20-399 524-886 (919)
7 PF02209 VHP: Villin headpiece 99.7 2.7E-17 5.9E-22 123.2 3.4 36 948-983 1-36 (36)
8 smart00153 VHP Villin headpiec 99.7 4.5E-17 9.7E-22 122.4 3.8 36 948-983 1-36 (36)
9 smart00262 GEL Gelsolin homolo 99.6 7E-16 1.5E-20 141.5 10.7 88 141-233 2-89 (90)
10 smart00262 GEL Gelsolin homolo 99.6 9.3E-16 2E-20 140.7 11.2 80 264-344 11-90 (90)
11 KOG1044 Actin-binding LIM Zn-f 99.5 8.3E-15 1.8E-19 166.6 3.4 63 921-983 605-670 (670)
12 PF00626 Gelsolin: Gelsolin re 99.3 2.1E-12 4.6E-17 114.3 6.2 69 269-338 8-76 (76)
13 PF00626 Gelsolin: Gelsolin re 99.3 4.4E-12 9.6E-17 112.2 6.8 74 150-228 3-76 (76)
14 COG5028 Vesicle coat complex C 96.3 0.012 2.6E-07 71.2 8.8 117 621-740 708-857 (861)
15 KOG1984 Vesicle coat complex C 95.9 0.035 7.6E-07 68.1 10.1 111 621-738 857-998 (1007)
16 PTZ00395 Sec24-related protein 95.0 0.08 1.7E-06 68.1 9.4 113 621-740 1403-1551(1560)
17 KOG1984 Vesicle coat complex C 93.7 0.19 4.1E-06 62.1 8.4 66 270-336 882-973 (1007)
18 COG5028 Vesicle coat complex C 92.7 0.17 3.7E-06 61.7 5.9 66 270-335 737-828 (861)
19 PTZ00395 Sec24-related protein 92.5 0.28 6.1E-06 63.4 7.8 32 271-302 1436-1467(1560)
20 KOG1985 Vesicle coat complex C 92.0 0.23 4.9E-06 61.2 5.9 114 621-739 734-882 (887)
21 KOG1985 Vesicle coat complex C 80.9 1 2.2E-05 55.8 2.6 29 271-299 765-793 (887)
22 PLN00162 transport protein sec 78.2 5.9 0.00013 50.5 8.2 44 621-668 619-662 (761)
23 PLN00162 transport protein sec 72.6 14 0.00031 47.1 9.6 82 252-337 619-717 (761)
24 PF00241 Cofilin_ADF: Cofilin/ 53.8 48 0.001 32.0 7.4 55 413-467 47-104 (127)
25 KOG3655 Drebrins and related a 52.5 29 0.00064 41.0 6.4 61 429-489 73-135 (484)
26 smart00102 ADF Actin depolymer 42.5 74 0.0016 30.9 6.7 56 413-468 47-105 (127)
27 KOG3655 Drebrins and related a 39.9 49 0.0011 39.3 5.6 109 7-115 12-134 (484)
28 smart00102 ADF Actin depolymer 37.4 1.3E+02 0.0029 29.1 7.6 77 19-95 16-105 (127)
29 PF00241 Cofilin_ADF: Cofilin/ 33.1 1.5E+02 0.0032 28.6 7.2 87 19-108 16-115 (127)
30 cd00013 ADF Actin depolymerisa 31.4 1.9E+02 0.0042 27.9 7.7 55 414-468 54-111 (132)
31 PLN03216 actin depolymerizing 30.0 3.5E+02 0.0076 27.1 9.3 107 1-110 5-131 (141)
32 cd00013 ADF Actin depolymerisa 26.0 2.3E+02 0.005 27.4 7.2 60 45-107 59-120 (132)
No 1
>KOG0443 consensus Actin regulatory proteins (gelsolin/villin family) [Cytoskeleton]
Probab=100.00 E-value=1.1e-221 Score=1892.40 Aligned_cols=817 Identities=52% Similarity=0.908 Sum_probs=755.5
Q ss_pred CCCccccCChhhhcCCccccEEEEEEECceeeeCCCCCcCeeeeCcEEEEEEeecCCCCCceEEEEEEecCCCChhhhhh
Q 002001 1 MSTSAKSLDPAFQGAGQRVGTEIWRIENFQPVPLPKSEHGKFYMGDCYIVLQTTPGKGGAYLYDIHFWIGKDTSQDEAGT 80 (983)
Q Consensus 1 ~~~~~~~~d~~f~~~g~~~gl~IWrIe~~~~v~vp~~~~G~Fy~gD~YIVL~t~~~~~~~~~~~Ih~W~G~~ss~de~g~ 80 (983)
|+.+|.++|++|+++|+++||+|||||||+++|||++.||+||+|||||||+|+.++++.+.|+||||||+++|+||+|+
T Consensus 1 ~s~~~~~ld~af~~ag~~pGl~IWRIe~f~lv~VP~s~~G~Fy~GdaYIvL~t~~~k~~~l~~DIHyWLGkd~S~dE~g~ 80 (827)
T KOG0443|consen 1 MSMSMLDLDPAFQGAGQKPGLEIWRIENFELVPVPKSSHGKFYTGDAYIVLKTTLKKNGSLSYDIHYWLGKDSSQDEAGA 80 (827)
T ss_pred CCccccccCHHHHhcccCCceEEEEeccCeeeecchhccCceecCceEEEEehhhccCCccceeEEEEecCccchhhhcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCcceEEEeeccCCCHHHHhhcCCcEEEecCcccCCCccccccccccEEEEEecceeEEEEEecCCcC
Q 002001 81 AAIKTVELDAVLGGRAVQHRELQGHESDKFLSYFKPCIIPLEGGVASGFRKTEEEEFETRLYVCKGKRVVRMKQVPFARS 160 (983)
Q Consensus 81 AA~~aveLd~~Lgg~~vq~Re~QG~Es~~FLs~Fk~~ii~~~Gg~~sgf~~~e~~~~~~rLy~vkGk~~v~~~eV~~s~s 160 (983)
||++|+|||++|||++|||||||||||+.||+|||+||||++||++|||+||+.+.+.+|||||||+|+||++|||++|+
T Consensus 81 aAiktveLD~~Lgg~~vQhREVQg~ES~~FLsYFK~gi~~~~GGv~Sg~khv~~~~~~~rL~~~KGkr~vr~~eV~~~~s 160 (827)
T KOG0443|consen 81 AAIKTVELDDYLGGRAVQHREVQGHESEKFLSYFKPGIIYQEGGVASGFKHVETEEYQVRLFHCKGKRNVRVKEVPFSWS 160 (827)
T ss_pred eeeeeEehhhhhCCCcceeehhcccchHHHHhhccCCceecccccccCcccccccceeeEEEEEccceeEEEEEEEeehh
Confidence 99999999999999999999999999999999999999999999999999999999988999999999999999999999
Q ss_pred CcCCCCceEEeCCCeEEEEcCCCCCHHHHHHHHHHHHHHhhccCCCCccEEEEeCCCCCCCCChhhHHHHhCCCCC-CCC
Q 002001 161 SLNHDDVFILDTKDKIYQFNGANSNIQERAKALEVIQFLKEKYHDGNCNVAIVDDGKLDTESDSGEFWVLFGGFAP-IGK 239 (983)
Q Consensus 161 SLNs~DvFILd~~~~Iy~W~G~~Sn~~Er~kA~~la~~Ik~~~~~G~~~I~~VdeG~~~~~~E~~eFw~~LGg~~~-~~~ 239 (983)
|||++||||||++++||||+|++||++||+||+++|+.|+|.+|.|+|+|.+||+|+++.+++.++||..+||.++ ++.
T Consensus 161 S~N~gDvFILD~g~~i~qw~G~~Ss~~ER~KAl~~~~~IrD~e~~Gr~~V~vvdd~~~~~d~d~~~~~~~~~g~~~~~~~ 240 (827)
T KOG0443|consen 161 SLNHGDVFILDTGSKIYQWNGPNSSIQERAKALEVVQYIRDNERDGRCEVAVVDDGKEAADSDLGEFWGFVLGFAPALPK 240 (827)
T ss_pred hcCCCcEEEEEcCCceEEEcCCcccHHHHHHHHHHHHHhhccCCCCceeEEEecCcccccCchHHHHHHhhcCcCccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999988 666
Q ss_pred CCCCcccccccCCCCeEEEEe--CCceeEEEc--c-ccccccCCCcEEEeeCC-CeEEEEEcCCCCHHHHHHHHHHHHHH
Q 002001 240 KVATEDDVIAETTPPKLYSIE--DSQVKIVEG--E-LSKSMLENNKCYLLDRG-SEVFVWVGRVTQVEERKAASQAAEEF 313 (983)
Q Consensus 240 ~~~~~d~~~~~~~~~rLy~v~--~G~l~~~e~--~-l~q~~L~~d~vyILD~g-~eIyVWiGk~as~~eRk~A~~~A~~y 313 (983)
.....++.......++||+|+ .|.+.+..+ . |+|++|++++||||||| .+||||+|++++.+||++||..|++|
T Consensus 241 ~~~~~~~~~~~s~~~kLYkVsd~~g~l~v~~va~~~l~qdlLd~~dCYILD~g~~~IfVW~Gr~as~~ERkaAm~~AeeF 320 (827)
T KOG0443|consen 241 KSPDDDDEQANSAAAKLYKVSDASGGLKVPVVADGPLTKDLLDTEDCYILDCGGGEIFVWKGRQASLDERKAAMSSAEEF 320 (827)
T ss_pred CCcchhhhhhhccccEEEEEeccCCCccccccccchhhHHhhccCCeEEEecCCceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 655555555667889999999 466665443 2 99999999999999998 99999999999999999999999999
Q ss_pred HHhcCCCCCceEEEecCCCCChhhhhcccCCccCCCCCCCcccchhhHhhhhhccccccccCCCCCCCCCCCCcccCCcc
Q 002001 314 ISSQNRPKSIRITRVIQGYETYAFKSNFDSWPSGSTAPGAEEGRGKVAALLKQQGVGIKGMGKSTPTNEEVPPLLEGGGK 393 (983)
Q Consensus 314 i~~~~rp~~t~v~~V~eG~Ep~~FK~~F~~W~~~~~~~~~~~~rgkva~~~~~~~~dv~~l~~~~p~~~e~~~~~d~sG~ 393 (983)
|++++||.||+|++|.||+|++.||++|.+|++...+.+.+.+||++|++++++++||..|.+..+++++.+|+|||+|+
T Consensus 321 lk~k~yP~~TqV~rv~EG~Esa~FKq~F~~W~~~~~t~~~~~~rG~va~l~q~~~~Dv~~L~~~~~~aa~~~mvddg~G~ 400 (827)
T KOG0443|consen 321 LKKKKYPPNTQVVRVLEGAESAPFKQLFDSWPDKDQTNGKEEGRGKVAALLQVKGFDVTGLHKSPKMAAQPQMVDDGSGK 400 (827)
T ss_pred HHhccCCCCceEEEecCCCcchhHHHHHhhCccccccccccccccccceeeeecccchhhcccCccccccccceecCCCc
Confidence 99999999999999999999999999999999998887888999999999988999999997777789999999999999
Q ss_pred EEEEEEeCCccccCCCCccceeeeCcEEEEEEeeecCCCCcceEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEE
Q 002001 394 MEVWRINGSAKTSLPKEDIGKFYSGDCYIVLYTYHSGDRKEDYFLCCWFGKDSIEEDQKMATRLANTMCNSLKGRPVQGR 473 (983)
Q Consensus 394 l~VWRIe~~~~~~v~~~~~G~FysgDcYIVlytY~~~~~~~~~~iy~W~G~~ss~de~~~aa~~a~eld~~l~g~~vq~R 473 (983)
++||||++.++++||..++|+||+||||||+|||..++++.+|+||.|+|++|+++|+++|+.+|++|+++++|.|+|+|
T Consensus 401 ~~Vwrv~~~~~~~v~~~~~g~fy~GdcYlvlYtY~~~~~~~~~iiY~W~G~qAs~ee~~~a~~~A~~l~~s~kg~~vq~r 480 (827)
T KOG0443|consen 401 LQVWRVEGDEKQPVDIADYGKFYGGDCYLVLYTYPRGEERTEHIIYVWQGKQASQEERAAAISLAKALVESLKGVPVQVR 480 (827)
T ss_pred EEEEEEcCceeeecChHHhCcccCCCeEEEEEeeccCCcccceEEEEEecccCCHHHHHHHHHHHHHHhhhcCCceeEEE
Confidence 99999999999999999999999999999999995356689999999999999999999999999999999999999999
Q ss_pred eecCCCCHHHHhhcCC-eEEEeCccccCCccccccCCCCCccccCCceeEEEEEecCCCceEEEEeccCcCCCCCCCeEE
Q 002001 474 IFQGREPPQFVALFQP-MVVVKGGLCSGYKKSLADKGLTDETYTADSIALIRISGTSIHNNKTEQVDAVATSLNSSECFL 552 (983)
Q Consensus 474 v~QGkEp~~Fl~iF~~-~iI~~Gg~~s~~~~~~~e~~~~~~~y~~~~~~Lf~V~G~~~~~~~aveV~~~assLnS~d~FI 552 (983)
|+|||||+|||+||++ |||++||++. .+++|+.++++||||+|++++|++|+||++.++||||+||||
T Consensus 481 v~~GkEP~hF~~iFqgkliifkgg~s~-----------~g~~~~~~~t~LFqV~Gt~~~n~kAveV~~~A~SLNSsd~fv 549 (827)
T KOG0443|consen 481 IYEGKEPPHFLAIFQGKLIIFKGGTSE-----------EGNTYPAPSTRLFQVQGTGPSNTKAVEVPAVASSLNSSDCFV 549 (827)
T ss_pred eecCCCChHHHHhhCCceEEEecCcCC-----------CCCccCCCceEEEEEeccCcccceeEeeccccccccccceEE
Confidence 9999999999999998 9999999973 245677888999999999999999999999999999999999
Q ss_pred eeeCCeEEEEECCCCCHHHHHHHHHHHHHhCCCceEEeeecCCCccccccccCCCcCCCCCCC-CCCCCCCCcEEEEEec
Q 002001 553 LQSGSTMFTWHGNQSTFEQQQLAAKVAEFLKPGVAIKHAKEGTESSAFWFPLGGKQSYTSKKV-SPEIVRDPHLFTFSFN 631 (983)
Q Consensus 553 L~~~~~iyvW~G~~ss~~er~~A~~va~~l~~~~~~~~v~EG~E~~~FW~~LGgk~~y~~~~~-~~~~~~~prLF~~S~~ 631 (983)
|++++++|+|||++|+++||+||++++..|+ ..+...+.||+||++||++|||+.+|+++++ .....++||||.||+.
T Consensus 550 L~t~s~~ylW~G~gss~~e~e~A~~v~~~l~-~~~~~~v~EG~Ep~~FWe~LGGk~~Y~~sk~~~~~~~~~PrLF~Cs~~ 628 (827)
T KOG0443|consen 550 LKTGSSVYLWCGKGSSGDEREMAKRVLDLLK-RCQSTAVKEGSEPDEFWELLGGKAEYPSSKRLEEKPERDPRLFSCSNK 628 (827)
T ss_pred EecCCeEEEEeCCCCCHHHHHHHHHHHHHHh-cCChhhhhcCCCchhhHHHcCCCCCCCcCccccccCCCCCcEEEEEec
Confidence 9999999999999999999999999999997 3577889999999999999999999999984 4456799999999999
Q ss_pred CCceeEeeecccCccCCCCCCEEEEeCCCEEEEEEcCCCCHHHHHHHHHHHHHHHhhhcccCCCCCCCcEEEecCCCCCc
Q 002001 632 KGKFEVEEVYNFSQDDLLTEDILILDTHAEVFVWVGQSVDSKEKQSAFEFGQNYIDMATSLEGLSPKVPLYKVTEGNEPC 711 (983)
Q Consensus 632 ~G~~~v~EI~~FsQdDL~~~dv~ILD~~~eIfVWiG~~a~~~ek~~Al~~A~~Yl~~~~~~~~r~~~~pI~~V~eG~EP~ 711 (983)
+|+|+++||++|+||||+++||||||||++||||||++++++||..|+.+|++||+++ ..+||++.|||++|+||+||+
T Consensus 629 ~g~f~~~EI~~F~QdDL~tdDi~lLDt~~evfvWvG~~a~~~eK~~Al~~~~~yl~~~-~p~gr~~~TPI~vV~qG~EPp 707 (827)
T KOG0443|consen 629 TGSFVVEEIYNFTQDDLMTDDIMLLDTWSEVFVWVGQEANEKEKEEALTIGQKYLETD-LPEGRDPRTPIYVVKQGHEPP 707 (827)
T ss_pred CCcEEEEEecCcchhhccccceEEEecCceEEEEecCCCChhHHHHHHHHHHHHHhcc-CcccCCCCCceEEecCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999 445999999999999999999
Q ss_pred cccccee-cCCCcccccCchHHHHHHHHhcCCCccccccccCCCCCccchhhhhhhccCCCCCCCCCCCCCCCCCCCCCC
Q 002001 712 FCTTFFS-WDPTKATVQGNSFQKKVALLFGASHAAEDKSHANQGGPTQRASALAALSSAFNPSSERSTSPSHDRSNGSNQ 790 (983)
Q Consensus 712 ~Ft~~F~-Wd~~k~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 790 (983)
+||+||. ||+.| +||++++++|++..
T Consensus 708 ~Ftg~F~~WD~~k-----wS~~~~~~~l~~~~------------------------------------------------ 734 (827)
T KOG0443|consen 708 FFTGFFLSWDPSK-----WSFQKKLKDLKNKV------------------------------------------------ 734 (827)
T ss_pred hhhccccccCCcc-----cccchHHHHHhccc------------------------------------------------
Confidence 9999999 99998 57899999998661
Q ss_pred CCCCCcchhHHHhhhcccCCCCCCCCCCCCCCCCCCchHHHHHHHHhhhhhccccCCCCCCCCCCCCCCCccccCCCCcc
Q 002001 791 GGPTQRASALAALSSAFKSSPGTKASAPKTSGSGQGSQRAAAVAALSQVLSAEKKRSPDTSPTRTSGSPTAETSLSSEPK 870 (983)
Q Consensus 791 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 870 (983)
.+++.+++++++.++|. +.+- +. +
T Consensus 735 ---~~~~~~~~~~~a~~~sk----~~~~---~~---------------------------~------------------- 758 (827)
T KOG0443|consen 735 ---TYNARAISEISADVRSK----LYPD---SL---------------------------N------------------- 758 (827)
T ss_pred ---ccchhhccchhhhhhcc----cccc---cC---------------------------C-------------------
Confidence 24444555666665552 1100 00 0
Q ss_pred ccccccccccccccCCcccccccccccCCCCCCCccccccccccCCCCCCCcccChHHHhhccCCCCCCCCccccccCCC
Q 002001 871 AEYAHSESEASEQVGDVKETEEVVPVSESNGDDSETKQVTEQDENGSETSRSTFSYDQLKARSDNPVTGIDFKRREAYLS 950 (983)
Q Consensus 871 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~vd~~~~E~yLs 950 (983)
+ + .. ....+|||++|+.++.++.++|||+|||.|||
T Consensus 759 ------------------------~---------~-------~~----~p~~~~~~e~l~~~~~~~~~~id~~rrE~yLs 794 (827)
T KOG0443|consen 759 ------------------------P---------D-------SE----APRPAFPYEQLLTQSEDPVPDIDPTRREAYLS 794 (827)
T ss_pred ------------------------C---------C-------cc----CcccCCCHHHHhccccCcCCCCChhHhhhhcc
Confidence 0 0 00 11248999999966666555599999999999
Q ss_pred HHHHHHHhCCCHHHHhcCchhhHhhhhhhcCCC
Q 002001 951 DEEFQTVFGMMKEAFYKLPKWKQDMQKKKFDLF 983 (983)
Q Consensus 951 ~~~F~~~f~m~~~~f~~lp~Wkq~~~Kk~~~Lf 983 (983)
++||+.+||||++|||+||+|||++|||+++||
T Consensus 795 ~~dF~~~Fgmtk~eF~~LPkWKq~~lKk~~~LF 827 (827)
T KOG0443|consen 795 EEEFVSVFGMTKEEFYALPKWKQNKLKKQFGLF 827 (827)
T ss_pred HHHHHHHhCcCHHHHhhcchhHHHHHhhhhccC
Confidence 999999999999999999999999999999999
No 2
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=100.00 E-value=3.8e-101 Score=862.93 Aligned_cols=689 Identities=28% Similarity=0.496 Sum_probs=572.0
Q ss_pred hcCCccccEEEEEEECceeeeCCCCCcCeeeeCcEEEEEEeecCCCCCceEEEEEEecCCCChhhhhhHHHHHHHHHHHh
Q 002001 13 QGAGQRVGTEIWRIENFQPVPLPKSEHGKFYMGDCYIVLQTTPGKGGAYLYDIHFWIGKDTSQDEAGTAAIKTVELDAVL 92 (983)
Q Consensus 13 ~~~g~~~gl~IWrIe~~~~v~vp~~~~G~Fy~gD~YIVL~t~~~~~~~~~~~Ih~W~G~~ss~de~g~AA~~aveLd~~L 92 (983)
+.+|+.+|+.||.||||-+..+.+-.||+||++||||||.|+....|.++|.||||||.+++-|...++|++||.|..+|
T Consensus 495 eDvGqlpGltiWeIENF~P~~~eEafHGkFYeaDcYiVLKT~~ddsG~L~weIfyWiG~eAtLDK~aCsAiHAVnLRN~L 574 (1255)
T KOG0444|consen 495 EDVGQLPGLTIWEIENFYPSIMEEAFHGKFYEADCYIVLKTTRDDSGQLRWEIFYWIGEEATLDKGACSAIHAVNLRNHL 574 (1255)
T ss_pred cccCCCCCceEEeehhhhhHHHHHHhccceecccEEEEEEeecccccccceeEEEEecccccccchhhhHHHhhhhhhhh
Confidence 36899999999999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred CCcceEEEeeccCCCHHHHhhcCCcEEEecCc-ccCCCccccccccccEEEEEecc-eeEEEEEecCCcCCcCCCCceEE
Q 002001 93 GGRAVQHRELQGHESDKFLSYFKPCIIPLEGG-VASGFRKTEEEEFETRLYVCKGK-RVVRMKQVPFARSSLNHDDVFIL 170 (983)
Q Consensus 93 gg~~vq~Re~QG~Es~~FLs~Fk~~ii~~~Gg-~~sgf~~~e~~~~~~rLy~vkGk-~~v~~~eV~~s~sSLNs~DvFIL 170 (983)
|..|..+||.||.||++||++|..-|+|.+|| .+|||..+|...+.+|||+|-++ ..|.+.-||++..||....||+|
T Consensus 575 gA~CRTvREEmgDEsEeFL~lF~~ei~YIEGGrTasGFYT~E~~~h~TRlYrv~~~g~~i~lEPVpl~~tSLDPRf~FlL 654 (1255)
T KOG0444|consen 575 GATCRTVREEMGDESEEFLTLFGEEIVYIEGGRTASGFYTTEKPAHLTRLYRVGVNGTAIELEPVPLSVTSLDPRFCFLL 654 (1255)
T ss_pred CchhhhhHHhhCccHHHHHHHhcceeEEEecCceecceeeecchHHhhhhheeccccceeEeeccCccccccCcceEEEE
Confidence 99999999999999999999999999999999 88999999988899999999887 68999999999999999999999
Q ss_pred eCCCeEEEEcCCCCCHHHHHHHHHHHHHHhhccCCCCccEEEEeCCCCCCCCChhhHHHHhCCCCCCCCCCCCccc-ccc
Q 002001 171 DTKDKIYQFNGANSNIQERAKALEVIQFLKEKYHDGNCNVAIVDDGKLDTESDSGEFWVLFGGFAPIGKKVATEDD-VIA 249 (983)
Q Consensus 171 d~~~~Iy~W~G~~Sn~~Er~kA~~la~~Ik~~~~~G~~~I~~VdeG~~~~~~E~~eFw~~LGg~~~~~~~~~~~d~-~~~ 249 (983)
|.+.+||+|.|-.|.+.--.||+.+|.+|..++|.|+|+|...-+|. |+.|||..|||...-+.....+.- +.+
T Consensus 655 D~G~~IyiW~G~~s~~t~~~KARLfAEkinK~eRKgK~EI~l~rQg~-----e~pEFWqaLgg~p~e~~~~ikeHVPEdf 729 (1255)
T KOG0444|consen 655 DAGETIYIWSGYKSRITVSNKARLFAEKINKRERKGKSEIELCRQGR-----EPPEFWQALGGNPDEPQGAIKEHVPEDF 729 (1255)
T ss_pred eCCceEEEEeccchhcccchHHHHHHHHhhhhhccCceeeehhhhcC-----CCHHHHHHhCCCCcccccchhhcCCccc
Confidence 99999999999999999999999999999999999999999999884 899999999997644332211100 112
Q ss_pred cCCCCeEEEEe--CCceeEEEc---c---ccccccCCCcEEEeeCCCeEEEEEcCCCCHHHHHHHHHHHHHHHHhcCCCC
Q 002001 250 ETTPPKLYSIE--DSQVKIVEG---E---LSKSMLENNKCYLLDRGSEVFVWVGRVTQVEERKAASQAAEEFISSQNRPK 321 (983)
Q Consensus 250 ~~~~~rLy~v~--~G~l~~~e~---~---l~q~~L~~d~vyILD~g~eIyVWiGk~as~~eRk~A~~~A~~yi~~~~rp~ 321 (983)
....+|||.|. .|.+++-.+ + +.|++|++..||||||.+.||||+||+++.-.|.+|.....++.....||.
T Consensus 730 ~p~qpkLYkV~lGmGyLELPQvel~P~~~l~q~lL~sk~VyiLDc~sDiF~W~GkKs~RLvraAa~KL~~EL~~M~dRPd 809 (1255)
T KOG0444|consen 730 VPEQPKLYKVNLGMGYLELPQVELLPKGILKQDLLGSKGVYILDCNSDIFLWIGKKSNRLVRAAAQKLVVELHQMIDRPD 809 (1255)
T ss_pred CCCCcceEEEccccceeecchhhhchhhHHHHHhhcCCeEEEEecCCceEEEecccchHHHHHHHHHHHHHHHhhhcCcc
Confidence 35678999998 677765333 2 789999999999999999999999999999999999999999999999999
Q ss_pred CceEEEecCCCCChhhhhcccCCccCCCC--C-CC-----cccchhh-HhhhhhccccccccCCC-C---CCCCCCCCcc
Q 002001 322 SIRITRVIQGYETYAFKSNFDSWPSGSTA--P-GA-----EEGRGKV-AALLKQQGVGIKGMGKS-T---PTNEEVPPLL 388 (983)
Q Consensus 322 ~t~v~~V~eG~Ep~~FK~~F~~W~~~~~~--~-~~-----~~~rgkv-a~~~~~~~~dv~~l~~~-~---p~~~e~~~~~ 388 (983)
.+.|.++.||.|.-+|+.+|.+|++.... + .. ..|.-|+ ++.-.+-..|+..|+-. + |.++..+++.
T Consensus 810 yA~V~R~~EG~E~q~FrsKFagWDev~~VDyTRta~sV~~~pg~~k~~~~k~~~mraDLaALFlpRQp~MslaEaEqLmE 889 (1255)
T KOG0444|consen 810 YAQVYRETEGEESQMFRSKFAGWDEVVPVDYTRTADSVQRVPGDLKVIVKKDNMMRADLAALFLPRQPSMSLAEAEQLME 889 (1255)
T ss_pred hhheeeccCccHHHHHHHhhCCcceeeeeecccchHHHhhCcchhhHHHhhhhhhHHHHHHHhcCCCCCCChHHHHHHHH
Confidence 99999999999999999999999987531 1 10 1111121 11111113444444322 1 2344445555
Q ss_pred cCCcc---EEEEEEeCCccccCCCCccceeeeCcEEEEEEeee-----cCCCC----------------------cceEE
Q 002001 389 EGGGK---MEVWRINGSAKTSLPKEDIGKFYSGDCYIVLYTYH-----SGDRK----------------------EDYFL 438 (983)
Q Consensus 389 d~sG~---l~VWRIe~~~~~~v~~~~~G~FysgDcYIVlytY~-----~~~~~----------------------~~~~i 438 (983)
+++-+ ++-|.++|...+.+|+++.|+||++||||+|+.|. +++|+ .+|++
T Consensus 890 ewNyDLe~ME~FVLEgKKFvrLPeeEfG~FYT~dCYVFLCRY~vp~EE~Eeg~ed~~n~~advsks~e~~qPE~dfqCvV 969 (1255)
T KOG0444|consen 890 EWNYDLELMESFVLEGKKFVRLPEEEFGIFYTMDCYVFLCRYAVPPEEDEEGEEDHANPAADVSKSDEDDQPEMDFQCVV 969 (1255)
T ss_pred HhcccHHHHHHHhhcCchhccCCHHHhCeeeccceEEEEEeeecCCCCccccccccCCccccccccccccCCccceeEEE
Confidence 66544 56788999999999999999999999999999996 11111 27999
Q ss_pred EEEcCCCCCHHHH-HHHHHHHHHHHHHcCCCCeEEEeecCCCCHHHHhhcCC-eEEEeCccccCCccccccCCCCCcccc
Q 002001 439 CCWFGKDSIEEDQ-KMATRLANTMCNSLKGRPVQGRIFQGREPPQFVALFQP-MVVVKGGLCSGYKKSLADKGLTDETYT 516 (983)
Q Consensus 439 y~W~G~~ss~de~-~~aa~~a~eld~~l~g~~vq~Rv~QGkEp~~Fl~iF~~-~iI~~Gg~~s~~~~~~~e~~~~~~~y~ 516 (983)
||||||+++.... .....+.......++++.-.||++|..|-+.||+.|+. +||++|.... -+ .. -
T Consensus 970 YFWQGR~AsNMGWLtFTF~LQkkFe~~F~~kLEVVRm~QQQEN~KFlSHFKRKFiIhrGkRk~-~~----~~-------G 1037 (1255)
T KOG0444|consen 970 YFWQGRDASNMGWLTFTFQLQKKFEEIFKDKLEVVRMYQQQENHKFLSHFKRKFIIHRGKRKL-TK----NL-------G 1037 (1255)
T ss_pred EEecCCccCccceEEEEEEehhhHHHhcccceeeeeHhhhhhhhHHHHHhhhhheeeccccch-hh----hh-------c
Confidence 9999999987544 22334556667778999999999999999999999995 7777775421 01 01 1
Q ss_pred CCceeEEEEEecCCC-ceEEEEeccCcCCCCCCCeEEeee-------CCeEEEEECCCCCHHHHHHHHHHHHHhCC-Cce
Q 002001 517 ADSIALIRISGTSIH-NNKTEQVDAVATSLNSSECFLLQS-------GSTMFTWHGNQSTFEQQQLAAKVAEFLKP-GVA 587 (983)
Q Consensus 517 ~~~~~Lf~V~G~~~~-~~~aveV~~~assLnS~d~FIL~~-------~~~iyvW~G~~ss~~er~~A~~va~~l~~-~~~ 587 (983)
...+.|||+|.++.. ++|+|||.+.++.|||..||||+. ++.+|+|-|+.|+++|++.|..+...... ..-
T Consensus 1038 ~~~pelfq~R~NGsalctR~IQin~da~~LnS~FC~iL~vPFe~~~~~gvvy~w~gk~sdp~e~~~a~d~~~~~~d~~~~ 1117 (1255)
T KOG0444|consen 1038 GKWPELFQMRANGSALCTRTIQINCDANQLNSAFCHMLRIPFEEDGHRGVVYVWMGKDSDPREHEFASDLVVRDDDNDFR 1117 (1255)
T ss_pred CCCchheeeecCCccceeeeEEecCcHHHHhhhhHheEecccccCCCceEEEEEeccCCChHHHHHHHHhcCccccchhh
Confidence 234679999988664 899999999999999999999974 36789999999999999999655443322 234
Q ss_pred EEeeecCCCccccccccCCCcCCCCCCCCCCCCCCCcEEEEEecCCceeEeee-cccCccCCCCCCEEEEeCCCEEEEEE
Q 002001 588 IKHAKEGTESSAFWFPLGGKQSYTSKKVSPEIVRDPHLFTFSFNKGKFEVEEV-YNFSQDDLLTEDILILDTHAEVFVWV 666 (983)
Q Consensus 588 ~~~v~EG~E~~~FW~~LGgk~~y~~~~~~~~~~~~prLF~~S~~~G~~~v~EI-~~FsQdDL~~~dv~ILD~~~eIfVWi 666 (983)
+..+.||.|+.+||..+||+++|.... ....--|||+|++.+|+|.++|- .+||||||..+|+||||.+..+|.||
T Consensus 1118 ~~~~~egee~e~fw~~~g~~k~ye~d~---~~~khtrlfrc~nekgyfa~sek~~DfcqDDl~dddim~ldng~~v~~w~ 1194 (1255)
T KOG0444|consen 1118 IVEVQEGEENEEFWKVLGGKKKYETDS---SFVKHTRLFRCTNEKGYFAISEKTVDFCQDDLDDDDIMILDNGDAVFLWI 1194 (1255)
T ss_pred hhccCCccchHHHhcccCCCCccchhH---HHHHHHHHHhccchhhhhhHhHhhhhhhhccchhhhhhhhcccceeeeee
Confidence 677899999999999999999886432 12234689999999999999887 49999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHhhhcccCCCCCCCc--EEEecCCCCCccccccee-cCCCcc
Q 002001 667 GQSVDSKEKQSAFEFGQNYIDMATSLEGLSPKVP--LYKVTEGNEPCFCTTFFS-WDPTKA 724 (983)
Q Consensus 667 G~~a~~~ek~~Al~~A~~Yl~~~~~~~~r~~~~p--I~~V~eG~EP~~Ft~~F~-Wd~~k~ 724 (983)
|...+..|-+.+...+|-|..+.+. +....| ...+..|.|.+.|+++|+ |...+.
T Consensus 1195 g~~~s~ie~Kls~~a~Qvy~~~mr~---k~~e~pr~~~l~~~gre~~~F~~cfhaws~~~~ 1252 (1255)
T KOG0444|consen 1195 GARSSDIEAKLSYQAAQVYHASMRM---KANEKPRKFMLAVRGRESCRFRKCFHAWSKMKE 1252 (1255)
T ss_pred cceehhHHHHHHHHHHHHHHHhccc---ccccchHHHHHHHhcchhhhhHHHHHHHHHhhc
Confidence 9999999999999999999988654 333444 356889999999999999 976543
No 3
>KOG0445 consensus Actin regulatory protein supervillin (gelsolin/villin family) [Cytoskeleton]
Probab=100.00 E-value=1.3e-96 Score=828.86 Aligned_cols=614 Identities=27% Similarity=0.465 Sum_probs=494.0
Q ss_pred ccEEEEEecceeEEEEEecCCcCCcCCCCceEEeCCCeEEEEcCCCCCHHHHHHHHHHHHHHhhccCCC-Cc-cEEEEeC
Q 002001 138 ETRLYVCKGKRVVRMKQVPFARSSLNHDDVFILDTKDKIYQFNGANSNIQERAKALEVIQFLKEKYHDG-NC-NVAIVDD 215 (983)
Q Consensus 138 ~~rLy~vkGk~~v~~~eV~~s~sSLNs~DvFILd~~~~Iy~W~G~~Sn~~Er~kA~~la~~Ik~~~~~G-~~-~I~~Vde 215 (983)
..+|+||||+++|.++.|++..+|||++|||||..++.+|.|.|..+|+.||+||.+++..|..+..-| ++ .|++|.+
T Consensus 223 ~vMLlqVkGr~hVqtRLVeP~~ssln~gdCF~lv~~~~lf~yvG~faNviEk~kas~lc~~I~~k~dLgCtAt~ivtit~ 302 (919)
T KOG0445|consen 223 RVMLLQVKGRRHVQTRLVEPRASSLNSGDCFLLVSPHCLFLYVGEFANVIEKAKASELCTLIQTKRDLGCTATYIVTITE 302 (919)
T ss_pred ceEEEEEcccccceeEEechhhcccccCceEEEechhHHhhhhhHHHHHHHHhHHHHHHHHHhhcccCCceeEEEEEEec
Confidence 689999999999999999999999999999999999999999999999999999999999997764332 22 3667766
Q ss_pred CCCCCCCChhhHHHHhCCCCCCCCCCCCcccccccCC---CCeEEEEeCCceeEEEcc---ccccccCCCcEEEeeCCCe
Q 002001 216 GKLDTESDSGEFWVLFGGFAPIGKKVATEDDVIAETT---PPKLYSIEDSQVKIVEGE---LSKSMLENNKCYLLDRGSE 289 (983)
Q Consensus 216 G~~~~~~E~~eFw~~LGg~~~~~~~~~~~d~~~~~~~---~~rLy~v~~G~l~~~e~~---l~q~~L~~d~vyILD~g~e 289 (983)
-+ ...-....||++||+...+....-..+++.++.. ...+|++.+.++.+.+-. ++.++|++..|.|+|+|+|
T Consensus 303 ~~-~~t~~~~~Fw~llg~qs~~~~~g~a~ede~fE~~iietN~iyr~~dd~l~p~~~~w~ipk~~~l~p~eVLvFDFGSE 381 (919)
T KOG0445|consen 303 IN-THTHAAKDFWKLLGGQSSYQSAGDAKEDELFEAAIIETNCIYRLMDDKLVPDDDYWKIPKCSLLQPKEVLVFDFGSE 381 (919)
T ss_pred cc-hhHHHHHHHHHHhCCccchhhcCCccccchHHHHHHHhhhHHhhcccccCccccccccccccccCcceEEEEecCce
Confidence 32 2223457899999987766543333334444433 345677777777765532 8899999999999999999
Q ss_pred EEEEEcCCCCHHHHHHHHHHHHHHHH-----------------hcCCCCCceEEEecCCCCChhhhhcccCCccCCCCCC
Q 002001 290 VFVWVGRVTQVEERKAASQAAEEFIS-----------------SQNRPKSIRITRVIQGYETYAFKSNFDSWPSGSTAPG 352 (983)
Q Consensus 290 IyVWiGk~as~~eRk~A~~~A~~yi~-----------------~~~rp~~t~v~~V~eG~Ep~~FK~~F~~W~~~~~~~~ 352 (983)
||||.||.++...|+.|+++|+++++ ..+||.|+...+|+||.|+++||++|.+||+......
T Consensus 382 vYVW~Gk~~~~~~~~~A~~lAk~l~~~dy~nc~~npld~~~~~~~gRPeW~i~gkitq~~et~LFKeKFsDWpE~~r~~~ 461 (919)
T KOG0445|consen 382 VYVWHGKEVTLAQRKIAFQLAKHLWNFDYENCDINPLDLIPRKGQGRPEWAIFGKITQHNETILFKEKFSDWPELKRSNE 461 (919)
T ss_pred EEEEcCccCchHHHHHHHHHHHHHhCCCcccCccccccccccccCCCcceeeechhhcchhhhhHHHhhccchHhhhhhc
Confidence 99999999999999999999999875 3589999999999999999999999999998764322
Q ss_pred CcccchhhHhhhhhc-----cccccccCCCCCCC--------------------CCCCCcccCCccEEEEEEeCCccccC
Q 002001 353 AEEGRGKVAALLKQQ-----GVGIKGMGKSTPTN--------------------EEVPPLLEGGGKMEVWRINGSAKTSL 407 (983)
Q Consensus 353 ~~~~rgkva~~~~~~-----~~dv~~l~~~~p~~--------------------~e~~~~~d~sG~l~VWRIe~~~~~~v 407 (983)
.+.|+ .+..++.. .+|+..|.+ .|.. ...+.+|..+.++.+|.|-++....+
T Consensus 462 ~~k~~--~~~~k~np~~~v~a~~~t~~~~-ep~~~~~~iL~~~nlgrg~~l~d~~drr~fdVis~s~d~W~i~ef~~~~~ 538 (919)
T KOG0445|consen 462 KNKGE--LAQHKENPRTDVKAYDVTRMVS-EPQTTAGTILDGVNLGRGYGLVDGHDRRQFDVISVSVDVWHILEFDYSRL 538 (919)
T ss_pred cCchh--hhhhhcCCceeeeehhheeccc-chhhhHHHHhhhhccCCceeeeecccceeeeeeeecccceeeehhhhhhh
Confidence 22221 11111111 223333322 2210 11123445677899999999999999
Q ss_pred CCCccceeeeCcEEEEEEeeec---------------CCCCcceEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCCCeEE
Q 002001 408 PKEDIGKFYSGDCYIVLYTYHS---------------GDRKEDYFLCCWFGKDSIEEDQKMATRLANTMCNSLKGRPVQG 472 (983)
Q Consensus 408 ~~~~~G~FysgDcYIVlytY~~---------------~~~~~~~~iy~W~G~~ss~de~~~aa~~a~eld~~l~g~~vq~ 472 (983)
| +++||||++|||||.|.|.. ..||++|++|||||+|++..|+|+||+++++||+ .+..|+
T Consensus 539 ~-~~~ghF~s~~~YvvrWky~Is~~Vr~~~~g~~~~r~~Gr~rcvyf~WqG~hst~~ekG~~AL~tvElD~---e~gaqv 614 (919)
T KOG0445|consen 539 P-QSIGHFHSGDAYVVRWKYMISTAVRSRQKGEHSVRAAGRERCVYFFWQGRHSTVSEKGTSALMTVELDE---ERGAQV 614 (919)
T ss_pred h-hhhhccccCceEEEEEEEEeehhhhhhhcCccchhhcccceEEEEEEccccCCcccccceeeeeeeecc---ccCcee
Confidence 8 89999999999999999961 3578899999999999999999999999999997 567899
Q ss_pred EeecCCCCHHHHhhcCC-eEEEeCccccCCccccccCCCCCccccCCceeEEEEEecCCCceEEEEeccCcCCCCCCCeE
Q 002001 473 RIFQGREPPQFVALFQP-MVVVKGGLCSGYKKSLADKGLTDETYTADSIALIRISGTSIHNNKTEQVDAVATSLNSSECF 551 (983)
Q Consensus 473 Rv~QGkEp~~Fl~iF~~-~iI~~Gg~~s~~~~~~~e~~~~~~~y~~~~~~Lf~V~G~~~~~~~aveV~~~assLnS~d~F 551 (983)
||.||+||+.||++|+| |+++.|-... ..-|||+|+|..+.++-..||.+..|+|+|+-.|
T Consensus 615 rv~qG~Ep~~Fl~lF~g~m~vhsgr~E~------------------~~erlY~v~G~vs~Et~l~Ev~c~~S~LRSr~sm 676 (919)
T KOG0445|consen 615 RVLQGKEPPCFLQLFQGGMVVHSGRREE------------------EEERLYCVRGEVSVETNLLEVACHCSSLRSRTSM 676 (919)
T ss_pred EeecCCCccHHHHHhcCCeeEEcCchhh------------------chhheeeEecccccchhhhHhhhccccccccceE
Confidence 99999999999999995 6666664311 1237999999999999999999999999999999
Q ss_pred EeeeC--CeEEEEECCCCCHHHHHHHHHHHHHhCC-------CceEEeeecCCCccccccccCCCcCCCCCCCCCCCCCC
Q 002001 552 LLQSG--STMFTWHGNQSTFEQQQLAAKVAEFLKP-------GVAIKHAKEGTESSAFWFPLGGKQSYTSKKVSPEIVRD 622 (983)
Q Consensus 552 IL~~~--~~iyvW~G~~ss~~er~~A~~va~~l~~-------~~~~~~v~EG~E~~~FW~~LGgk~~y~~~~~~~~~~~~ 622 (983)
|+..+ ..+|+|||..+-.+.|+.+..+|+.|.. +..+..|+||++|..||++||-|. ..+.
T Consensus 677 v~~~~~~~~~~~whg~k~~~ht~~v~v~aa~~~~~q~pgs~~~~~~~Eveegs~~~~~~~alGrkd----------f~~~ 746 (919)
T KOG0445|consen 677 VVLNVNKALIYLWHGCKAQAHTKEVGVTAANKIKEQCPGSSSKVTIHEVEEGSEPLGFWDALGRKD----------FNFA 746 (919)
T ss_pred EEEeccccceEEEecccCCcchhhHhHHHHHHHHHhCCCccccceeEeecCCCCchhhhhhccccc----------cccc
Confidence 99876 4699999999999999999988887742 357889999999999999999874 4688
Q ss_pred CcEEEEEecCCceeEeee-------cccCccCCCCCCEEEEeCCCEEEEEEcCCCCHHHHHHHHHHHHHHHhhhcccCCC
Q 002001 623 PHLFTFSFNKGKFEVEEV-------YNFSQDDLLTEDILILDTHAEVFVWVGQSVDSKEKQSAFEFGQNYIDMATSLEGL 695 (983)
Q Consensus 623 prLF~~S~~~G~~~v~EI-------~~FsQdDL~~~dv~ILD~~~eIfVWiG~~a~~~ek~~Al~~A~~Yl~~~~~~~~r 695 (983)
||||-+|..+ ++|+ ++|+|+||.+. ||||.|+++|+|. -..+++.||++|.+|++. +
T Consensus 747 ~RlF~~sS~q----a~els~p~rc~~pFsQ~~Ly~a--fLvD~gdelwLW~----w~s~r~~Aleta~~Ywk~------~ 810 (919)
T KOG0445|consen 747 PRLFILSSSQ----ATELSYPARCPMPFSQEDLYSA--FLVDNGDELWLWQ----WASDRKSALETALQYWKN------L 810 (919)
T ss_pred ceeeeccchh----hhhccCcccCCCcccHHHHhhh--eeeccCCeeEeeh----hhhHHHHHHHHHHHHHhc------c
Confidence 9999988765 4554 68999999995 9999999999998 466899999999999984 2
Q ss_pred CCCCcEEEecCCCCCccccccee-cCCCcccccCchHHHHHHHHhcCCCccccccccCCCCCccchhhhhhhccCCCCCC
Q 002001 696 SPKVPLYKVTEGNEPCFCTTFFS-WDPTKATVQGNSFQKKVALLFGASHAAEDKSHANQGGPTQRASALAALSSAFNPSS 774 (983)
Q Consensus 696 ~~~~pI~~V~eG~EP~~Ft~~F~-Wd~~k~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 774 (983)
..|-++|..|.||..||++|+ |....... +.
T Consensus 811 --~~p~~vV~aGlEPl~Fk~lFp~We~red~D-------------~~--------------------------------- 842 (919)
T KOG0445|consen 811 --KAPSYVVHAGLEPLTFKNLFPSWEHREDID-------------TE--------------------------------- 842 (919)
T ss_pred --CCCceEEEcCcChhhhhhhCCCceeccccC-------------CC---------------------------------
Confidence 267899999999999999999 98875442 00
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcchhHHHhhhcccCCCCCCCCCCCCCCCCCCchHHHHHHHHhhhhhccccCCCCCCCCC
Q 002001 775 ERSTSPSHDRSNGSNQGGPTQRASALAALSSAFKSSPGTKASAPKTSGSGQGSQRAAAVAALSQVLSAEKKRSPDTSPTR 854 (983)
Q Consensus 775 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 854 (983)
+ ...+.+.
T Consensus 843 ------------------~-s~~i~~v----------------------------------------------------- 850 (919)
T KOG0445|consen 843 ------------------V-SNQITLV----------------------------------------------------- 850 (919)
T ss_pred ------------------c-CCchhHH-----------------------------------------------------
Confidence 0 0000000
Q ss_pred CCCCCCccccCCCCccccccccccccccccCCcccccccccccCCCCCCCccccccccccCCCCCCCcccChHHHhhccC
Q 002001 855 TSGSPTAETSLSSEPKAEYAHSESEASEQVGDVKETEEVVPVSESNGDDSETKQVTEQDENGSETSRSTFSYDQLKARSD 934 (983)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 934 (983)
+|+ ... -..++||++.|.. .
T Consensus 851 -------------------------------------------------~d~--La~-------~c~T~yple~l~a--r 870 (919)
T KOG0445|consen 851 -------------------------------------------------EDV--LAK-------LCKTIYPLEDLLA--R 870 (919)
T ss_pred -------------------------------------------------HHH--HHH-------HhhhcChHHHHhc--C
Confidence 000 000 2235799999986 3
Q ss_pred CCCCCCCccccccCCCHHHHHHHhCCCHHHHhcCchhhHhhhhhhcCCC
Q 002001 935 NPVTGIDFKRREAYLSDEEFQTVFGMMKEAFYKLPKWKQDMQKKKFDLF 983 (983)
Q Consensus 935 ~~p~~vd~~~~E~yLs~~~F~~~f~m~~~~f~~lp~Wkq~~~Kk~~~Lf 983 (983)
.||+||||+|+|.||+||||+.+|+|+|+||+.||.|||++|||..|||
T Consensus 871 pLPeGvdp~rLE~YLtdeDF~~al~~~R~Ef~alp~WKQ~~lkK~~GLF 919 (919)
T KOG0445|consen 871 PLPEGVDPLRLEIYLTDEDFEFALDMTRDEFNALPAWKQVNLKKAKGLF 919 (919)
T ss_pred CCCCCCCchhheeeechHHHHHHhccCHHHhhcchhhhhhhhhhhccCC
Confidence 7999999999999999999999999999999999999999999999999
No 4
>KOG0443 consensus Actin regulatory proteins (gelsolin/villin family) [Cytoskeleton]
Probab=100.00 E-value=1.6e-62 Score=569.40 Aligned_cols=316 Identities=32% Similarity=0.517 Sum_probs=286.2
Q ss_pred hcCCccccEEEEEEECceeeeCCCCCcCeeeeCcEEEEEEeecCCCCCceEEEEEEecCCCChhhhhhHHHHHHHHHHHh
Q 002001 13 QGAGQRVGTEIWRIENFQPVPLPKSEHGKFYMGDCYIVLQTTPGKGGAYLYDIHFWIGKDTSQDEAGTAAIKTVELDAVL 92 (983)
Q Consensus 13 ~~~g~~~gl~IWrIe~~~~v~vp~~~~G~Fy~gD~YIVL~t~~~~~~~~~~~Ih~W~G~~ss~de~g~AA~~aveLd~~L 92 (983)
.+.|+ ++||||++...++||...||+||+||||||||+|.....+..|.||.|+|++|+++|+.+|+.+|++|++.+
T Consensus 396 dg~G~---~~Vwrv~~~~~~~v~~~~~g~fy~GdcYlvlYtY~~~~~~~~~iiY~W~G~qAs~ee~~~a~~~A~~l~~s~ 472 (827)
T KOG0443|consen 396 DGSGK---LQVWRVEGDEKQPVDIADYGKFYGGDCYLVLYTYPRGEERTEHIIYVWQGKQASQEERAAAISLAKALVESL 472 (827)
T ss_pred cCCCc---EEEEEEcCceeeecChHHhCcccCCCeEEEEEeeccCCcccceEEEEEecccCCHHHHHHHHHHHHHHhhhc
Confidence 46777 999999999999999999999999999999999987666889999999999999999999999999999999
Q ss_pred CCcceEEEeeccCCCHHHHhhcCCcEEEecCcccCCCcccc-ccccccEEEEEecc--eeEEEEEecCCcCCcCCCCceE
Q 002001 93 GGRAVQHRELQGHESDKFLSYFKPCIIPLEGGVASGFRKTE-EEEFETRLYVCKGK--RVVRMKQVPFARSSLNHDDVFI 169 (983)
Q Consensus 93 gg~~vq~Re~QG~Es~~FLs~Fk~~ii~~~Gg~~sgf~~~e-~~~~~~rLy~vkGk--~~v~~~eV~~s~sSLNs~DvFI 169 (983)
+|.+||.|+.||+||+||+++|++.+|+++||.+. +-+ .....++||||+|. .+.++.||+..++||||+||||
T Consensus 473 kg~~vq~rv~~GkEP~hF~~iFqgkliifkgg~s~---~g~~~~~~~t~LFqV~Gt~~~n~kAveV~~~A~SLNSsd~fv 549 (827)
T KOG0443|consen 473 KGVPVQVRIYEGKEPPHFLAIFQGKLIIFKGGTSE---EGNTYPAPSTRLFQVQGTGPSNTKAVEVPAVASSLNSSDCFV 549 (827)
T ss_pred CCceeEEEeecCCCChHHHHhhCCceEEEecCcCC---CCCccCCCceEEEEEeccCcccceeEeeccccccccccceEE
Confidence 99999999999999999999999999999999874 222 23346899999987 5789999999999999999999
Q ss_pred EeCCCeEEEEcCCCCCHHHHHHHHHHHHHHhhccCCCCccEEEEeCCCCCCCCChhhHHHHhCCCCCCCCCCCCcccccc
Q 002001 170 LDTKDKIYQFNGANSNIQERAKALEVIQFLKEKYHDGNCNVAIVDDGKLDTESDSGEFWVLFGGFAPIGKKVATEDDVIA 249 (983)
Q Consensus 170 Ld~~~~Iy~W~G~~Sn~~Er~kA~~la~~Ik~~~~~G~~~I~~VdeG~~~~~~E~~eFw~~LGg~~~~~~~~~~~d~~~~ 249 (983)
|.++..+|+|+|+.|+..||.+|..++..|+ +|+-..|.|| +|+++||++|||+.+|+..... ...
T Consensus 550 L~t~s~~ylW~G~gss~~e~e~A~~v~~~l~------~~~~~~v~EG-----~Ep~~FWe~LGGk~~Y~~sk~~---~~~ 615 (827)
T KOG0443|consen 550 LKTGSSVYLWCGKGSSGDEREMAKRVLDLLK------RCQSTAVKEG-----SEPDEFWELLGGKAEYPSSKRL---EEK 615 (827)
T ss_pred EecCCeEEEEeCCCCCHHHHHHHHHHHHHHh------cCChhhhhcC-----CCchhhHHHcCCCCCCCcCccc---ccc
Confidence 9999999999999999999999999999997 3666778888 5899999999999999765431 122
Q ss_pred cCCCCeEEEEe--CCceeEEEcc-ccccccCCCcEEEeeCCCeEEEEEcCCCCHHHHHHHHHHHHHHHHhc---CCCCCc
Q 002001 250 ETTPPKLYSIE--DSQVKIVEGE-LSKSMLENNKCYLLDRGSEVFVWVGRVTQVEERKAASQAAEEFISSQ---NRPKSI 323 (983)
Q Consensus 250 ~~~~~rLy~v~--~G~l~~~e~~-l~q~~L~~d~vyILD~g~eIyVWiGk~as~~eRk~A~~~A~~yi~~~---~rp~~t 323 (983)
....||||.|+ .|.|++.|+. |+|+||.++|+|||||+++||||+|+.++.+||..|+.+|++|++.+ +|...|
T Consensus 616 ~~~~PrLF~Cs~~~g~f~~~EI~~F~QdDL~tdDi~lLDt~~evfvWvG~~a~~~eK~~Al~~~~~yl~~~~p~gr~~~T 695 (827)
T KOG0443|consen 616 PERDPRLFSCSNKTGSFVVEEIYNFTQDDLMTDDIMLLDTWSEVFVWVGQEANEKEKEEALTIGQKYLETDLPEGRDPRT 695 (827)
T ss_pred CCCCCcEEEEEecCCcEEEEEecCcchhhccccceEEEecCceEEEEecCCCChhHHHHHHHHHHHHHhccCcccCCCCC
Confidence 24567999887 8999999998 99999999999999999999999999999999999999999999766 565569
Q ss_pred eEEEecCCCCChhhhhcccCCccCC
Q 002001 324 RITRVIQGYETYAFKSNFDSWPSGS 348 (983)
Q Consensus 324 ~v~~V~eG~Ep~~FK~~F~~W~~~~ 348 (983)
||.+|.||+||..|+.+|.+|+...
T Consensus 696 PI~vV~qG~EPp~Ftg~F~~WD~~k 720 (827)
T KOG0443|consen 696 PIYVVKQGHEPPFFTGFFLSWDPSK 720 (827)
T ss_pred ceEEecCCCCCChhhccccccCCcc
Confidence 9999999999999999999999876
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=100.00 E-value=2.9e-46 Score=420.99 Aligned_cols=320 Identities=26% Similarity=0.477 Sum_probs=279.8
Q ss_pred ccEEEEEEeCCccccCCCCccceeeeCcEEEEEEeeecCCCCcceEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCCCeE
Q 002001 392 GKMEVWRINGSAKTSLPKEDIGKFYSGDCYIVLYTYHSGDRKEDYFLCCWFGKDSIEEDQKMATRLANTMCNSLKGRPVQ 471 (983)
Q Consensus 392 G~l~VWRIe~~~~~~v~~~~~G~FysgDcYIVlytY~~~~~~~~~~iy~W~G~~ss~de~~~aa~~a~eld~~l~g~~vq 471 (983)
..+.||.|++|-+..+++..||+||.+||||||.|.....|..+|.||||+|.+++.|.++++|.+|+.|.+.|+..|..
T Consensus 501 pGltiWeIENF~P~~~eEafHGkFYeaDcYiVLKT~~ddsG~L~weIfyWiG~eAtLDK~aCsAiHAVnLRN~LgA~CRT 580 (1255)
T KOG0444|consen 501 PGLTIWEIENFYPSIMEEAFHGKFYEADCYIVLKTTRDDSGQLRWEIFYWIGEEATLDKGACSAIHAVNLRNHLGATCRT 580 (1255)
T ss_pred CCceEEeehhhhhHHHHHHhccceecccEEEEEEeecccccccceeEEEEecccccccchhhhHHHhhhhhhhhCchhhh
Confidence 36999999999999999999999999999999999876778899999999999999999999999999999999999999
Q ss_pred EEeecCCCCHHHHhhcCC-eEEEeCc-cccCCccccccCCCCCccccCCceeEEEEEecCCCceEEEEeccCcCCCCCCC
Q 002001 472 GRIFQGREPPQFVALFQP-MVVVKGG-LCSGYKKSLADKGLTDETYTADSIALIRISGTSIHNNKTEQVDAVATSLNSSE 549 (983)
Q Consensus 472 ~Rv~QGkEp~~Fl~iF~~-~iI~~Gg-~~s~~~~~~~e~~~~~~~y~~~~~~Lf~V~G~~~~~~~aveV~~~assLnS~d 549 (983)
+|+.||.|+.+||++|+. ++++.|| +++||... |. ...-+|||+|.+.+ .++..--|++..+||..+.
T Consensus 581 vREEmgDEsEeFL~lF~~ei~YIEGGrTasGFYT~--E~-------~~h~TRlYrv~~~g-~~i~lEPVpl~~tSLDPRf 650 (1255)
T KOG0444|consen 581 VREEMGDESEEFLTLFGEEIVYIEGGRTASGFYTT--EK-------PAHLTRLYRVGVNG-TAIELEPVPLSVTSLDPRF 650 (1255)
T ss_pred hHHhhCccHHHHHHHhcceeEEEecCceecceeee--cc-------hHHhhhhheecccc-ceeEeeccCccccccCcce
Confidence 999999999999999995 7788999 88998632 11 11236999999853 3455556777889999999
Q ss_pred eEEeeeCCeEEEEECCCCCHHHHHHHHHHHHHhCC-----CceEEeeecCCCccccccccCCCcCCCCC---CCCCC--C
Q 002001 550 CFLLQSGSTMFTWHGNQSTFEQQQLAAKVAEFLKP-----GVAIKHAKEGTESSAFWFPLGGKQSYTSK---KVSPE--I 619 (983)
Q Consensus 550 ~FIL~~~~~iyvW~G~~ss~~er~~A~~va~~l~~-----~~~~~~v~EG~E~~~FW~~LGgk~~y~~~---~~~~~--~ 619 (983)
||+|+.|.+||||.|-.|.-.--.+|+.+|+.|.+ ..++..+.+|+|+++||.+|||...-+.. ++.++ .
T Consensus 651 ~FlLD~G~~IyiW~G~~s~~t~~~KARLfAEkinK~eRKgK~EI~l~rQg~e~pEFWqaLgg~p~e~~~~ikeHVPEdf~ 730 (1255)
T KOG0444|consen 651 CFLLDAGETIYIWSGYKSRITVSNKARLFAEKINKRERKGKSEIELCRQGREPPEFWQALGGNPDEPQGAIKEHVPEDFV 730 (1255)
T ss_pred EEEEeCCceEEEEeccchhcccchHHHHHHHHhhhhhccCceeeehhhhcCCCHHHHHHhCCCCcccccchhhcCCcccC
Confidence 99999999999999999988888888888888863 35789999999999999999998765432 22222 3
Q ss_pred CCCCcEEEEEecCCceeEeeec-----ccCccCCCCCCEEEEeCCCEEEEEEcCCCCHHHHHHHHHHHHHHHhhhcccCC
Q 002001 620 VRDPHLFTFSFNKGKFEVEEVY-----NFSQDDLLTEDILILDTHAEVFVWVGQSVDSKEKQSAFEFGQNYIDMATSLEG 694 (983)
Q Consensus 620 ~~~prLF~~S~~~G~~~v~EI~-----~FsQdDL~~~dv~ILD~~~eIfVWiG~~a~~~ek~~Al~~A~~Yl~~~~~~~~ 694 (983)
+.+|+||.+-...|++.+..|. ..+|+.|.+..||||||++.||||+|++++.-.|..|+++.++..++. .
T Consensus 731 p~qpkLYkV~lGmGyLELPQvel~P~~~l~q~lL~sk~VyiLDc~sDiF~W~GkKs~RLvraAa~KL~~EL~~M~----d 806 (1255)
T KOG0444|consen 731 PEQPKLYKVNLGMGYLELPQVELLPKGILKQDLLGSKGVYILDCNSDIFLWIGKKSNRLVRAAAQKLVVELHQMI----D 806 (1255)
T ss_pred CCCcceEEEccccceeecchhhhchhhHHHHHhhcCCeEEEEecCCceEEEecccchHHHHHHHHHHHHHHHhhh----c
Confidence 5789999999999999888772 589999999999999999999999999999999999999999988764 5
Q ss_pred CCCCCcEEEecCCCCCccccccee-cCCCccc
Q 002001 695 LSPKVPLYKVTEGNEPCFCTTFFS-WDPTKAT 725 (983)
Q Consensus 695 r~~~~pI~~V~eG~EP~~Ft~~F~-Wd~~k~~ 725 (983)
|+....|+++.+|.|...|+..|. ||.....
T Consensus 807 RPdyA~V~R~~EG~E~q~FrsKFagWDev~~V 838 (1255)
T KOG0444|consen 807 RPDYAQVYRETEGEESQMFRSKFAGWDEVVPV 838 (1255)
T ss_pred CcchhheeeccCccHHHHHHHhhCCcceeeee
Confidence 777889999999999999999998 9986543
No 6
>KOG0445 consensus Actin regulatory protein supervillin (gelsolin/villin family) [Cytoskeleton]
Probab=100.00 E-value=4.4e-40 Score=372.26 Aligned_cols=333 Identities=26% Similarity=0.424 Sum_probs=264.1
Q ss_pred cEEEEEEECceeeeCCCCCcCeeeeCcEEEEEEeecC---------------CCCCceEEEEEEecCCCChhhhhhHHHH
Q 002001 20 GTEIWRIENFQPVPLPKSEHGKFYMGDCYIVLQTTPG---------------KGGAYLYDIHFWIGKDTSQDEAGTAAIK 84 (983)
Q Consensus 20 gl~IWrIe~~~~v~vp~~~~G~Fy~gD~YIVL~t~~~---------------~~~~~~~~Ih~W~G~~ss~de~g~AA~~ 84 (983)
.+.+|.|-+|....+| .+||+||++|||||.+.|.- ..|+.++.+|||+|.+++..|+|+||++
T Consensus 524 s~d~W~i~ef~~~~~~-~~~ghF~s~~~YvvrWky~Is~~Vr~~~~g~~~~r~~Gr~rcvyf~WqG~hst~~ekG~~AL~ 602 (919)
T KOG0445|consen 524 SVDVWHILEFDYSRLP-QSIGHFHSGDAYVVRWKYMISTAVRSRQKGEHSVRAAGRERCVYFFWQGRHSTVSEKGTSALM 602 (919)
T ss_pred cccceeeehhhhhhhh-hhhhccccCceEEEEEEEEeehhhhhhhcCccchhhcccceEEEEEEccccCCcccccceeee
Confidence 5789999999999999 78999999999999998761 2567889999999999999999999999
Q ss_pred HHHHHHHhCCcceEEEeeccCCCHHHHhhcCCcEEEecCcccCCCccccccccccEEEEEeccee--EEEEEecCCcCCc
Q 002001 85 TVELDAVLGGRAVQHRELQGHESDKFLSYFKPCIIPLEGGVASGFRKTEEEEFETRLYVCKGKRV--VRMKQVPFARSSL 162 (983)
Q Consensus 85 aveLd~~Lgg~~vq~Re~QG~Es~~FLs~Fk~~ii~~~Gg~~sgf~~~e~~~~~~rLy~vkGk~~--v~~~eV~~s~sSL 162 (983)
++|||+.-| .|+|+.||+||++||++|.|+|+++.|-.. +..-|||+|+|... ..+.||.+..|+|
T Consensus 603 tvElD~e~g---aqvrv~qG~Ep~~Fl~lF~g~m~vhsgr~E---------~~~erlY~v~G~vs~Et~l~Ev~c~~S~L 670 (919)
T KOG0445|consen 603 TVELDEERG---AQVRVLQGKEPPCFLQLFQGGMVVHSGRRE---------EEEERLYCVRGEVSVETNLLEVACHCSSL 670 (919)
T ss_pred eeeeccccC---ceeEeecCCCccHHHHHhcCCeeEEcCchh---------hchhheeeEecccccchhhhHhhhccccc
Confidence 999999766 699999999999999999999999987532 22457999999854 4788999999999
Q ss_pred CCCCceEEeCCC--eEEEEcCCCCCHHHHHHHHHHHHHHhhccCC--CCccEEEEeCCCCCCCCChhhHHHHhCCCCCCC
Q 002001 163 NHDDVFILDTKD--KIYQFNGANSNIQERAKALEVIQFLKEKYHD--GNCNVAIVDDGKLDTESDSGEFWVLFGGFAPIG 238 (983)
Q Consensus 163 Ns~DvFILd~~~--~Iy~W~G~~Sn~~Er~kA~~la~~Ik~~~~~--G~~~I~~VdeG~~~~~~E~~eFw~~LGg~~~~~ 238 (983)
.|...+|+...+ .||+|+|.++-...|..+..+|+.|+.+..+ |+..++.||+| +++..||+.||-+.
T Consensus 671 RSr~smv~~~~~~~~~~~whg~k~~~ht~~v~v~aa~~~~~q~pgs~~~~~~~Eveeg-----s~~~~~~~alGrkd--- 742 (919)
T KOG0445|consen 671 RSRTSMVVLNVNKALIYLWHGCKAQAHTKEVGVTAANKIKEQCPGSSSKVTIHEVEEG-----SEPLGFWDALGRKD--- 742 (919)
T ss_pred cccceEEEEeccccceEEEecccCCcchhhHhHHHHHHHHHhCCCccccceeEeecCC-----CCchhhhhhccccc---
Confidence 999999998654 6999999999999999999999999887664 45678889988 48899999998542
Q ss_pred CCCCCcccccccCCCCeEEEEeCCc-eeE-----EEccccccccCCCcEEEeeCCCeEEEEEcCCCCHHHHHHHHHHHHH
Q 002001 239 KKVATEDDVIAETTPPKLYSIEDSQ-VKI-----VEGELSKSMLENNKCYLLDRGSEVFVWVGRVTQVEERKAASQAAEE 312 (983)
Q Consensus 239 ~~~~~~d~~~~~~~~~rLy~v~~G~-l~~-----~e~~l~q~~L~~d~vyILD~g~eIyVWiGk~as~~eRk~A~~~A~~ 312 (983)
....+|||-.++-+ .++ +...|+|++|.+- ||||.|.++|+|. ...+|+.||++|.+
T Consensus 743 -----------f~~~~RlF~~sS~qa~els~p~rc~~pFsQ~~Ly~a--fLvD~gdelwLW~----w~s~r~~Aleta~~ 805 (919)
T KOG0445|consen 743 -----------FNFAPRLFILSSSQATELSYPARCPMPFSQEDLYSA--FLVDNGDELWLWQ----WASDRKSALETALQ 805 (919)
T ss_pred -----------ccccceeeeccchhhhhccCcccCCCcccHHHHhhh--eeeccCCeeEeeh----hhhHHHHHHHHHHH
Confidence 24678999776332 111 1123999999865 9999999999999 78899999999999
Q ss_pred HHHhcCCCCCceEEEecCCCCChhhhhcccCCccCCCCCCCcccchh-hHhhhhh--ccccccccCCCCCCCCCCCCccc
Q 002001 313 FISSQNRPKSIRITRVIQGYETYAFKSNFDSWPSGSTAPGAEEGRGK-VAALLKQ--QGVGIKGMGKSTPTNEEVPPLLE 389 (983)
Q Consensus 313 yi~~~~rp~~t~v~~V~eG~Ep~~FK~~F~~W~~~~~~~~~~~~rgk-va~~~~~--~~~dv~~l~~~~p~~~e~~~~~d 389 (983)
|++... .|-.+|..|.||..||.+|.+|....+.-........ +..++++ +.+-...++.++|.++.+.|.
T Consensus 806 Ywk~~~----~p~~vV~aGlEPl~Fk~lFp~We~red~D~~~s~~i~~v~d~La~~c~T~yple~l~arpLPeGvdp~-- 879 (919)
T KOG0445|consen 806 YWKNLK----APSYVVHAGLEPLTFKNLFPSWEHREDIDTEVSNQITLVEDVLAKLCKTIYPLEDLLARPLPEGVDPL-- 879 (919)
T ss_pred HHhccC----CCceEEEcCcChhhhhhhCCCceeccccCCCcCCchhHHHHHHHHHhhhcChHHHHhcCCCCCCCCch--
Confidence 999433 3468899999999999999999976543111111111 1112221 223333444678888877665
Q ss_pred CCccEEEEEE
Q 002001 390 GGGKMEVWRI 399 (983)
Q Consensus 390 ~sG~l~VWRI 399 (983)
.|+||--
T Consensus 880 ---rLE~YLt 886 (919)
T KOG0445|consen 880 ---RLEIYLT 886 (919)
T ss_pred ---hheeeec
Confidence 5666654
No 7
>PF02209 VHP: Villin headpiece domain; InterPro: IPR003128 Villin is an F-actin bundling protein involved in the maintenance of the microvilli of the absorptive epithelia. The villin-type "headpiece" domain is a modular motif found at the extreme C terminus of larger "core" domains in over 25 cytoskeletal proteins in plants and animals, often in assocation with the Gelsolin repeat. Although the headpiece is classified as an F-actin-binding domain, it has been shown that not all headpiece domains are intrinsically F-actin-binding motifs, surface charge distribution may be an important element for F-actin recognition []. An autonomously folding, 35 residue, thermostable subdomain (HP36) of the full-length 76 amino acid residue villin headpiece, is the smallest known example of a cooperatively folded domain of a naturally occurring protein. The structure of HP36, as determined by NMR spectroscopy, consists of three short helices surrounding a tightly packed hydrophobic core []. ; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1ZV6_A 1QZP_A 1UND_A 2PPZ_A 3TJW_B 1YU8_X 2JM0_A 1WY4_A 3MYC_A 1YU5_X ....
Probab=99.67 E-value=2.7e-17 Score=123.20 Aligned_cols=36 Identities=69% Similarity=1.199 Sum_probs=31.8
Q ss_pred CCCHHHHHHHhCCCHHHHhcCchhhHhhhhhhcCCC
Q 002001 948 YLSDEEFQTVFGMMKEAFYKLPKWKQDMQKKKFDLF 983 (983)
Q Consensus 948 yLs~~~F~~~f~m~~~~f~~lp~Wkq~~~Kk~~~Lf 983 (983)
||||+||++||||+|+||++||+|||++|||++|||
T Consensus 1 YLsd~dF~~vFgm~~~eF~~lP~WKq~~lKK~~~LF 36 (36)
T PF02209_consen 1 YLSDEDFEKVFGMSREEFYKLPKWKQNNLKKKAGLF 36 (36)
T ss_dssp GS-HHHHHHHHSS-HHHHHHS-HHHHHHHHHHTTT-
T ss_pred CcCHHHHHHHHCCCHHHHHHChHHHHHHHHHHhCCC
Confidence 899999999999999999999999999999999999
No 8
>smart00153 VHP Villin headpiece domain.
Probab=99.66 E-value=4.5e-17 Score=122.43 Aligned_cols=36 Identities=67% Similarity=1.207 Sum_probs=35.7
Q ss_pred CCCHHHHHHHhCCCHHHHhcCchhhHhhhhhhcCCC
Q 002001 948 YLSDEEFQTVFGMMKEAFYKLPKWKQDMQKKKFDLF 983 (983)
Q Consensus 948 yLs~~~F~~~f~m~~~~f~~lp~Wkq~~~Kk~~~Lf 983 (983)
||||+||+.||||||+|||+||+|||++|||+++||
T Consensus 1 yLsdeeF~~vfgmsr~eF~~LP~WKq~~lKk~~~LF 36 (36)
T smart00153 1 YLSDEDFEEVFGMTREEFYKLPLWKQNQLKKKLGLF 36 (36)
T ss_pred CCCHHHHHHHHCCCHHHHHhCcHhhHHHHHhhcCCC
Confidence 899999999999999999999999999999999998
No 9
>smart00262 GEL Gelsolin homology domain. Gelsolin/severin/villin homology domain. Calcium-binding and actin-binding. Both intra- and extracellular domains.
Probab=99.65 E-value=7e-16 Score=141.48 Aligned_cols=88 Identities=45% Similarity=0.764 Sum_probs=82.4
Q ss_pred EEEEecceeEEEEEecCCcCCcCCCCceEEeCCCeEEEEcCCCCCHHHHHHHHHHHHHHhhccCCCCccEEEEeCCCCCC
Q 002001 141 LYVCKGKRVVRMKQVPFARSSLNHDDVFILDTKDKIYQFNGANSNIQERAKALEVIQFLKEKYHDGNCNVAIVDDGKLDT 220 (983)
Q Consensus 141 Ly~vkGk~~v~~~eV~~s~sSLNs~DvFILd~~~~Iy~W~G~~Sn~~Er~kA~~la~~Ik~~~~~G~~~I~~VdeG~~~~ 220 (983)
+++++|...+.+.+|++++++||++||||||++..||+|+|++|+..||.+|+++|+.+....+.+.+.|.+|++|.
T Consensus 2 ~~~~~g~~~~~~~~~~~~~~~L~s~d~fild~~~~iyvW~G~~as~~ek~~A~~~a~~~~~~~~~~~~~i~~v~eg~--- 78 (90)
T smart00262 2 LVRVKGKRNVRVPEVPFSQGSLNSGDCYILDTGSEIYVWVGKKSSQDEKKKAAELAVELDDTLGPGPVQVRVVDEGK--- 78 (90)
T ss_pred eEEEeCCceEEEEEcCCCHHHCCCCCEEEEECCCEEEEEECCCCCHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCC---
Confidence 68899999999999999999999999999999999999999999999999999999999887776778999999985
Q ss_pred CCChhhHHHHhCC
Q 002001 221 ESDSGEFWVLFGG 233 (983)
Q Consensus 221 ~~E~~eFw~~LGg 233 (983)
|+.+||.+||+
T Consensus 79 --E~~~F~~~f~~ 89 (90)
T smart00262 79 --EPPEFWSLFGG 89 (90)
T ss_pred --CCHHHHHHhCC
Confidence 78899999986
No 10
>smart00262 GEL Gelsolin homology domain. Gelsolin/severin/villin homology domain. Calcium-binding and actin-binding. Both intra- and extracellular domains.
Probab=99.64 E-value=9.3e-16 Score=140.66 Aligned_cols=80 Identities=35% Similarity=0.670 Sum_probs=73.0
Q ss_pred eeEEEccccccccCCCcEEEeeCCCeEEEEEcCCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEecCCCCChhhhhcccC
Q 002001 264 VKIVEGELSKSMLENNKCYLLDRGSEVFVWVGRVTQVEERKAASQAAEEFISSQNRPKSIRITRVIQGYETYAFKSNFDS 343 (983)
Q Consensus 264 l~~~e~~l~q~~L~~d~vyILD~g~eIyVWiGk~as~~eRk~A~~~A~~yi~~~~rp~~t~v~~V~eG~Ep~~FK~~F~~ 343 (983)
..+.++.+.+++|++++|||||++++||||+|++++..+|..|+..|+.|++..+ +.+++|.+|.||.||..|+.+|.+
T Consensus 11 ~~~~~~~~~~~~L~s~d~fild~~~~iyvW~G~~as~~ek~~A~~~a~~~~~~~~-~~~~~i~~v~eg~E~~~F~~~f~~ 89 (90)
T smart00262 11 VRVPEVPFSQGSLNSGDCYILDTGSEIYVWVGKKSSQDEKKKAAELAVELDDTLG-PGPVQVRVVDEGKEPPEFWSLFGG 89 (90)
T ss_pred EEEEEcCCCHHHCCCCCEEEEECCCEEEEEECCCCCHHHHHHHHHHHHHHHHhcC-CCCceEEEEeCCCCCHHHHHHhCC
Confidence 3344456999999999999999999999999999999999999999999998765 667999999999999999999998
Q ss_pred C
Q 002001 344 W 344 (983)
Q Consensus 344 W 344 (983)
|
T Consensus 90 ~ 90 (90)
T smart00262 90 W 90 (90)
T ss_pred C
Confidence 8
No 11
>KOG1044 consensus Actin-binding LIM Zn-finger protein Limatin involved in axon guidance [Signal transduction mechanisms; Cytoskeleton]
Probab=99.49 E-value=8.3e-15 Score=166.61 Aligned_cols=63 Identities=35% Similarity=0.598 Sum_probs=60.4
Q ss_pred CcccChHHHhhcc---CCCCCCCCccccccCCCHHHHHHHhCCCHHHHhcCchhhHhhhhhhcCCC
Q 002001 921 RSTFSYDQLKARS---DNPVTGIDFKRREAYLSDEEFQTVFGMMKEAFYKLPKWKQDMQKKKFDLF 983 (983)
Q Consensus 921 ~~~~~~~~l~~~~---~~~p~~vd~~~~E~yLs~~~F~~~f~m~~~~f~~lp~Wkq~~~Kk~~~Lf 983 (983)
.++|||+.|+.++ .+||++||++++|+||+.|||.+||||+.+||++||.||||+|||+++||
T Consensus 605 ~KiypYe~L~vTnrgr~klp~dVDRtrLERHL~~e~F~eiF~MSi~EF~rL~LWkRnnlKkkAkLF 670 (670)
T KOG1044|consen 605 PKIYPYEMLMVTNRGRNKLPRDVDRTRLERHLSPEDFSEIFGMSISEFDRLPLWKRNNLKKKAKLF 670 (670)
T ss_pred ccccChHHheecccccccCcccchhhHHhhccCHHHHHHHhccCHhhhchhhhhhhhhhhhhhccC
Confidence 5799999999655 89999999999999999999999999999999999999999999999999
No 12
>PF00626 Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gelsolin is a cytoplasmic, calcium-regulated, actin-modulating protein that binds to the barbed ends of actin filaments, preventing monomer exchange (end-blocking or capping) []. It can promote nucleation (the assembly of monomers into filaments), as well as sever existing filaments. In addition, this protein binds with high affinity to fibronectin. Plasma gelsolin and cytoplasmic gelsolin are derived from a single gene by alternate initiation sites and differential splicing. Sequence comparisons indicate an evolutionary relationship between gelsolin, villin, fragmin and severin []. Six large repeating segments occur in gelsolin and villin, and 3 similar segments in severin and fragmin. While the multiple repeats have yet to be related to any known function of the actin-severing proteins, the superfamily appears to have evolved from an ancestral sequence of 120 to 130 amino acid residues [].; PDB: 3FG6_F 1RGI_G 2FGH_A 1D0N_B 3EGD_B 2NUP_B 2NUT_B 3EGX_B 1JHW_A 1J72_A ....
Probab=99.32 E-value=2.1e-12 Score=114.26 Aligned_cols=69 Identities=42% Similarity=0.706 Sum_probs=63.7
Q ss_pred ccccccccCCCcEEEeeCCCeEEEEEcCCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEecCCCCChhhh
Q 002001 269 GELSKSMLENNKCYLLDRGSEVFVWVGRVTQVEERKAASQAAEEFISSQNRPKSIRITRVIQGYETYAFK 338 (983)
Q Consensus 269 ~~l~q~~L~~d~vyILD~g~eIyVWiGk~as~~eRk~A~~~A~~yi~~~~rp~~t~v~~V~eG~Ep~~FK 338 (983)
..+++++|++++|||||++.+||||+|++++..+|..|+..|+++. ...|+.++.+.+|.+|.||..|.
T Consensus 8 ~~~s~~~L~s~~~yIld~~~~i~vW~G~~~~~~e~~~a~~~a~~~~-~~~~~~~~~~~~~~eg~E~~~F~ 76 (76)
T PF00626_consen 8 VPLSQSSLNSDDCYILDCGYEIFVWVGKKSSPEEKAFAAQLAQELL-SEERPPLPEVIRVEEGKEPAEFL 76 (76)
T ss_dssp ESSSGGGEETTSEEEEEESSEEEEEEHTTSHHHHHHHHHHHHHHHH-HHHTTTTSEEEEEETTHHHHHHH
T ss_pred CCCCHHHcCCCCEEEEEeCCCcEEEEeccCCHHHHHHHHHHHHHhh-hhcCCCCCEEEEecCCCCChHHC
Confidence 3499999999999999999999999999999999999999999988 44677778999999999999983
No 13
>PF00626 Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gelsolin is a cytoplasmic, calcium-regulated, actin-modulating protein that binds to the barbed ends of actin filaments, preventing monomer exchange (end-blocking or capping) []. It can promote nucleation (the assembly of monomers into filaments), as well as sever existing filaments. In addition, this protein binds with high affinity to fibronectin. Plasma gelsolin and cytoplasmic gelsolin are derived from a single gene by alternate initiation sites and differential splicing. Sequence comparisons indicate an evolutionary relationship between gelsolin, villin, fragmin and severin []. Six large repeating segments occur in gelsolin and villin, and 3 similar segments in severin and fragmin. While the multiple repeats have yet to be related to any known function of the actin-severing proteins, the superfamily appears to have evolved from an ancestral sequence of 120 to 130 amino acid residues [].; PDB: 3FG6_F 1RGI_G 2FGH_A 1D0N_B 3EGD_B 2NUP_B 2NUT_B 3EGX_B 1JHW_A 1J72_A ....
Probab=99.29 E-value=4.4e-12 Score=112.21 Aligned_cols=74 Identities=38% Similarity=0.512 Sum_probs=68.2
Q ss_pred EEEEEecCCcCCcCCCCceEEeCCCeEEEEcCCCCCHHHHHHHHHHHHHHhhccCCCCccEEEEeCCCCCCCCChhhHH
Q 002001 150 VRMKQVPFARSSLNHDDVFILDTKDKIYQFNGANSNIQERAKALEVIQFLKEKYHDGNCNVAIVDDGKLDTESDSGEFW 228 (983)
Q Consensus 150 v~~~eV~~s~sSLNs~DvFILd~~~~Iy~W~G~~Sn~~Er~kA~~la~~Ik~~~~~G~~~I~~VdeG~~~~~~E~~eFw 228 (983)
+++.++++++++||++||||||++..||+|.|+.++..||.+|+.+|+.|...++.+.+.+..+++|+ |+..||
T Consensus 3 ~~~~~~~~s~~~L~s~~~yIld~~~~i~vW~G~~~~~~e~~~a~~~a~~~~~~~~~~~~~~~~~~eg~-----E~~~F~ 76 (76)
T PF00626_consen 3 VRPEQVPLSQSSLNSDDCYILDCGYEIFVWVGKKSSPEEKAFAAQLAQELLSEERPPLPEVIRVEEGK-----EPAEFL 76 (76)
T ss_dssp EEEEEESSSGGGEETTSEEEEEESSEEEEEEHTTSHHHHHHHHHHHHHHHHHHHTTTTSEEEEEETTH-----HHHHHH
T ss_pred ccCCcCCCCHHHcCCCCEEEEEeCCCcEEEEeccCCHHHHHHHHHHHHHhhhhcCCCCCEEEEecCCC-----CChHHC
Confidence 56788999999999999999999999999999999999999999999999855677889999999995 888887
No 14
>COG5028 Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]
Probab=96.30 E-value=0.012 Score=71.21 Aligned_cols=117 Identities=21% Similarity=0.303 Sum_probs=77.3
Q ss_pred CCCcEEEEEe---cC-----CceeEeeecccCccCCCCCCEEEEeCCCEEEEEEcCCCCHHHHHHHHHH-----------
Q 002001 621 RDPHLFTFSF---NK-----GKFEVEEVYNFSQDDLLTEDILILDTHAEVFVWVGQSVDSKEKQSAFEF----------- 681 (983)
Q Consensus 621 ~~prLF~~S~---~~-----G~~~v~EI~~FsQdDL~~~dv~ILD~~~eIfVWiG~~a~~~ek~~Al~~----------- 681 (983)
..|+||.+-+ +. |.+..-.--|.+-+-|.+..+||||+|.+||+|||+.+++......+..
T Consensus 708 iYP~lyalHdm~~e~~l~~~~~~~~~~piNaT~s~le~~GlYLidtg~~iflw~g~d~~p~Ll~dlf~~~~~~~I~~~k~ 787 (861)
T COG5028 708 IYPTLYALHDMPIEAGLPDEGLLVLPSPINATSSLLESGGLYLIDTGQKIFLWFGKDAVPSLLQDLFGVDSLSDIPSGKF 787 (861)
T ss_pred hccceeeecccccccCCCcccccccccchhhhHHHHhcCCeEEEEcCCEEEEEecCCCCHHHHHHhcCcchhhhcccccc
Confidence 5688987652 22 2222222247888899999999999999999999999997655443332
Q ss_pred ------------HHHHHhhhcccCCCCCCCcEEEecCCCCCccccccee--cCCCcccccCchHHHHHHHHhc
Q 002001 682 ------------GQNYIDMATSLEGLSPKVPLYKVTEGNEPCFCTTFFS--WDPTKATVQGNSFQKKVALLFG 740 (983)
Q Consensus 682 ------------A~~Yl~~~~~~~~r~~~~pI~~V~eG~EP~~Ft~~F~--Wd~~k~~~~~~s~~~~~~~~~~ 740 (983)
+.+-|..-.. -.+...-|+++|++|.+|. .+.||. -=..+.. +.-||.+.|.+++.
T Consensus 788 ~~p~~~n~~n~~v~~iI~~lrs-~~~~~tl~lvlVR~~~d~s-~~~~~~s~lVEDk~~-n~~SY~~yL~~lh~ 857 (861)
T COG5028 788 TLPPTGNEFNERVRNIIGELRS-VNDDSTLPLVLVRGGGDPS-LRLWFFSTLVEDKTL-NIPSYLDYLQILHE 857 (861)
T ss_pred ccCCcCCHHHHHHHHHHHHHHh-hCCCCccceEEEecCCCcc-hhhheehheeccccc-CCccHHHHHHHHHH
Confidence 2222222111 0234566799999999998 455553 3344444 48899999888863
No 15
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.88 E-value=0.035 Score=68.12 Aligned_cols=111 Identities=23% Similarity=0.265 Sum_probs=74.4
Q ss_pred CCCcEEEEEecC--CceeEee--ecccCccCCCCCCEEEEeCCCEEEEEEcCCCCHHHHH--------------------
Q 002001 621 RDPHLFTFSFNK--GKFEVEE--VYNFSQDDLLTEDILILDTHAEVFVWVGQSVDSKEKQ-------------------- 676 (983)
Q Consensus 621 ~~prLF~~S~~~--G~~~v~E--I~~FsQdDL~~~dv~ILD~~~eIfVWiG~~a~~~ek~-------------------- 676 (983)
..|||+.+.+-. ..+.... -...+-+-|..++|||||.+..+|||||+.++....+
T Consensus 857 ~YPrl~p~hdl~i~dtl~~~~p~~VraS~e~l~negiYll~nG~~~ylwvg~sv~~~llQ~lf~V~s~~~i~s~~~~Lpe 936 (1007)
T KOG1984|consen 857 FYPRLLPFHDLDIEDTLEFVLPKAVRASSEFLSNEGIYLLDNGQKIYLWVGESVDPDLLQDLFSVSSFEQIDSQSGVLPE 936 (1007)
T ss_pred hccceeeeeccccccccccccccceecchhhccCCceEEEecCcEEEEEecCCCCHHHHHHHhcCccccccccccccccc
Confidence 679998877532 2221111 1367889999999999999999999999999864322
Q ss_pred ------HHHHHHHHHHhhhcccCCCCCCCcEEEecCCCCCccccccee-cCCCcccccCchHHHHHHHH
Q 002001 677 ------SAFEFGQNYIDMATSLEGLSPKVPLYKVTEGNEPCFCTTFFS-WDPTKATVQGNSFQKKVALL 738 (983)
Q Consensus 677 ------~Al~~A~~Yl~~~~~~~~r~~~~pI~~V~eG~EP~~Ft~~F~-Wd~~k~~~~~~s~~~~~~~~ 738 (983)
..+.-+..+|++ -|+...|+.+|++|.++.. ..|. ---.....++.||-..|..|
T Consensus 937 ~dn~lS~k~r~~i~~i~~-----~r~~~l~v~~~k~g~~~~~--~~~~~~lved~~~~~~sY~dyL~~~ 998 (1007)
T KOG1984|consen 937 LDNPLSRKVRNVISLIRR-----QRSSELPVVLVKQGLDGSE--VEFSEYLVEDRGRNISSYVDYLCEL 998 (1007)
T ss_pred cCcHHHHHHHHHHHHHHh-----ccccccccEEEecCCCchh--hhhhhhhhcccccCccccchHHHHH
Confidence 233445566665 2567899999999999886 3332 22222233467887776655
No 16
>PTZ00395 Sec24-related protein; Provisional
Probab=95.00 E-value=0.08 Score=68.07 Aligned_cols=113 Identities=12% Similarity=0.216 Sum_probs=69.3
Q ss_pred CCCcEEEEEec-----------CCceeEeeecccCccCCCCCCEEEEeCCCEEEEEEcCCCCHHHHHHHHH---------
Q 002001 621 RDPHLFTFSFN-----------KGKFEVEEVYNFSQDDLLTEDILILDTHAEVFVWVGQSVDSKEKQSAFE--------- 680 (983)
Q Consensus 621 ~~prLF~~S~~-----------~G~~~v~EI~~FsQdDL~~~dv~ILD~~~eIfVWiG~~a~~~ek~~Al~--------- 680 (983)
..||||.+.+- .+.+.+-.-.+.+.+-|..+.|||||+|..||||||+.+++.--+.-+-
T Consensus 1403 LYPRLYpLHdL~~e~e~d~~d~d~~ivLPp~LrLS~ErLesdGIYLLDNGe~IyLWVG~~V~PqLLqDLFGv~~~~~~~~ 1482 (1560)
T PTZ00395 1403 VYPVMYVIHIKGKTNEIDSMDVDDDLFIPKTIPSSAEKIYSNGIYLLDACTHFYLYFGFHSDANFAKEIVGDIPTEKNAH 1482 (1560)
T ss_pred hcCceEEcccccccccCCccCCCCccccCCcccchHHHhcCCcEEEEECCCEEEEEECCCCCHHHHHHHcCCCccccccc
Confidence 57999987541 1222222334678888999999999999999999999998754432221
Q ss_pred --------------HHHHHHhhhcccCCCCCCCcEEEecCC--CCCcccccceecCCCcccccCchHHHHHHHHhc
Q 002001 681 --------------FGQNYIDMATSLEGLSPKVPLYKVTEG--NEPCFCTTFFSWDPTKATVQGNSFQKKVALLFG 740 (983)
Q Consensus 681 --------------~A~~Yl~~~~~~~~r~~~~pI~~V~eG--~EP~~Ft~~F~Wd~~k~~~~~~s~~~~~~~~~~ 740 (983)
--.++|+.. ..+.+..||++|.++ .|+. |..++. ++. .. ..-||.+.|..|..
T Consensus 1483 eLPelDT~iS~RVrnII~~LR~~---r~~~~Y~pL~IVRqgDp~E~~-F~s~LV-EDR-s~-g~~SYvDFLc~LHK 1551 (1560)
T PTZ00395 1483 ELNLTDTPNAQKVQRIIKNLSRI---HHFNKYVPLVMVAPKSNEEEH-LISLCV-EDK-AD-KEYSYVNFLCFIHK 1551 (1560)
T ss_pred cccCCCCHHHHHHHHHHHHHHHh---ccCCCcceEEEEeCCCchHHH-HHHhCe-ecC-CC-CCCCHHHHHHHHHH
Confidence 011122221 112356788888766 4442 333333 332 22 36799998877753
No 17
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.72 E-value=0.19 Score=62.06 Aligned_cols=66 Identities=24% Similarity=0.467 Sum_probs=52.8
Q ss_pred cccccccCCCcEEEeeCCCeEEEEEcCCCCHHHHH--------------------------HHHHHHHHHHHhcCCCCCc
Q 002001 270 ELSKSMLENNKCYLLDRGSEVFVWVGRVTQVEERK--------------------------AASQAAEEFISSQNRPKSI 323 (983)
Q Consensus 270 ~l~q~~L~~d~vyILD~g~eIyVWiGk~as~~eRk--------------------------~A~~~A~~yi~~~~rp~~t 323 (983)
.++.+-|...+|||||+|..||+|+|..++..-.. ..++.+..+|+. -|+...
T Consensus 882 raS~e~l~negiYll~nG~~~ylwvg~sv~~~llQ~lf~V~s~~~i~s~~~~Lpe~dn~lS~k~r~~i~~i~~-~r~~~l 960 (1007)
T KOG1984|consen 882 RASSEFLSNEGIYLLDNGQKIYLWVGESVDPDLLQDLFSVSSFEQIDSQSGVLPELDNPLSRKVRNVISLIRR-QRSSEL 960 (1007)
T ss_pred ecchhhccCCceEEEecCcEEEEEecCCCCHHHHHHHhcCccccccccccccccccCcHHHHHHHHHHHHHHh-cccccc
Confidence 48899999999999999999999999998653322 344555666776 667678
Q ss_pred eEEEecCCCCChh
Q 002001 324 RITRVIQGYETYA 336 (983)
Q Consensus 324 ~v~~V~eG~Ep~~ 336 (983)
++.++.+|.++.+
T Consensus 961 ~v~~~k~g~~~~~ 973 (1007)
T KOG1984|consen 961 PVVLVKQGLDGSE 973 (1007)
T ss_pred ccEEEecCCCchh
Confidence 9999999998886
No 18
>COG5028 Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]
Probab=92.70 E-value=0.17 Score=61.75 Aligned_cols=66 Identities=23% Similarity=0.397 Sum_probs=48.5
Q ss_pred cccccccCCCcEEEeeCCCeEEEEEcCCCCHHHHHHHHHH-----------------------HHHHH---HhcCCCCCc
Q 002001 270 ELSKSMLENNKCYLLDRGSEVFVWVGRVTQVEERKAASQA-----------------------AEEFI---SSQNRPKSI 323 (983)
Q Consensus 270 ~l~q~~L~~d~vyILD~g~eIyVWiGk~as~~eRk~A~~~-----------------------A~~yi---~~~~rp~~t 323 (983)
.++.+.|++.++|+||+|.+||+|+|+++.+......+.. +...| +...+-...
T Consensus 737 NaT~s~le~~GlYLidtg~~iflw~g~d~~p~Ll~dlf~~~~~~~I~~~k~~~p~~~n~~n~~v~~iI~~lrs~~~~~tl 816 (861)
T COG5028 737 NATSSLLESGGLYLIDTGQKIFLWFGKDAVPSLLQDLFGVDSLSDIPSGKFTLPPTGNEFNERVRNIIGELRSVNDDSTL 816 (861)
T ss_pred hhhHHHHhcCCeEEEEcCCEEEEEecCCCCHHHHHHhcCcchhhhccccccccCCcCCHHHHHHHHHHHHHHhhCCCCcc
Confidence 3889999999999999999999999999986554433322 22222 333444446
Q ss_pred eEEEecCCCCCh
Q 002001 324 RITRVIQGYETY 335 (983)
Q Consensus 324 ~v~~V~eG~Ep~ 335 (983)
++..|.+|.+|.
T Consensus 817 ~lvlVR~~~d~s 828 (861)
T COG5028 817 PLVLVRGGGDPS 828 (861)
T ss_pred ceEEEecCCCcc
Confidence 788999999988
No 19
>PTZ00395 Sec24-related protein; Provisional
Probab=92.54 E-value=0.28 Score=63.37 Aligned_cols=32 Identities=22% Similarity=0.345 Sum_probs=29.3
Q ss_pred ccccccCCCcEEEeeCCCeEEEEEcCCCCHHH
Q 002001 271 LSKSMLENNKCYLLDRGSEVFVWVGRVTQVEE 302 (983)
Q Consensus 271 l~q~~L~~d~vyILD~g~eIyVWiGk~as~~e 302 (983)
++.+-|..++|||||+|..||+|+|+.++++-
T Consensus 1436 LS~ErLesdGIYLLDNGe~IyLWVG~~V~PqL 1467 (1560)
T PTZ00395 1436 SSAEKIYSNGIYLLDACTHFYLYFGFHSDANF 1467 (1560)
T ss_pred chHHHhcCCcEEEEECCCEEEEEECCCCCHHH
Confidence 78889999999999999999999999987654
No 20
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.04 E-value=0.23 Score=61.18 Aligned_cols=114 Identities=18% Similarity=0.274 Sum_probs=70.1
Q ss_pred CCCcEEEEEecC---Ccee------EeeecccCccCCCCCCEEEEeCCCEEEEEEcCCCCHH------------------
Q 002001 621 RDPHLFTFSFNK---GKFE------VEEVYNFSQDDLLTEDILILDTHAEVFVWVGQSVDSK------------------ 673 (983)
Q Consensus 621 ~~prLF~~S~~~---G~~~------v~EI~~FsQdDL~~~dv~ILD~~~eIfVWiG~~a~~~------------------ 673 (983)
..|.||.+..-. |... +-..-+.+-+-|....+||+|||.++|||+|+.|++.
T Consensus 734 IYP~Lysl~~l~~ea~~~~~d~~~~~p~~L~ltae~l~~~GlyL~D~g~~lfl~vg~~a~P~ll~~vfg~~~~adi~~~~ 813 (887)
T KOG1985|consen 734 IYPTLYSLHDLDDEAGLPIHDQTVVLPPPLNLTAELLSRRGLYLMDTGTTLFLWVGSNADPSLLFDVFGVSTLADIPIGK 813 (887)
T ss_pred hcccceeccccccccCcccccccccCCCccchHHHHhccCceEEEecCcEEEEEEcCCCCccccccccCcchHhhccccc
Confidence 568899876422 2221 1233478888999999999999999999999999742
Q ss_pred ----HHH-HHHHHHHHHHhhhcccCCCCCCCcE-EEecCCCCCccccccee--cCCCcccccCchHHHHHHHHh
Q 002001 674 ----EKQ-SAFEFGQNYIDMATSLEGLSPKVPL-YKVTEGNEPCFCTTFFS--WDPTKATVQGNSFQKKVALLF 739 (983)
Q Consensus 674 ----ek~-~Al~~A~~Yl~~~~~~~~r~~~~pI-~~V~eG~EP~~Ft~~F~--Wd~~k~~~~~~s~~~~~~~~~ 739 (983)
++. .-.+-...+|+..- +++ .-.|. ++|+++ |-..-+.+|. .=+.+.. .--||-+.|..|+
T Consensus 814 ~~lp~~~n~~s~r~~~fI~~lR--~d~-~~~p~~~ivr~~-~~s~~k~~f~~~lvEDrs~-~~~SY~efLq~lk 882 (887)
T KOG1985|consen 814 YTLPELDNEESDRVRRFIKKLR--DDR-TYFPNLYIVRGD-DNSPLKAWFFSRLVEDRSE-NSPSYYEFLQHLK 882 (887)
T ss_pred ccCcccccchhHHHHHHHHHhh--cCC-cccceEEEEecC-CCchHHHHHHHHHHhhhhc-CcHHHHHHHHHHH
Confidence 111 11233445555432 123 33455 455555 6666666663 3333333 3579999888876
No 21
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.88 E-value=1 Score=55.75 Aligned_cols=29 Identities=34% Similarity=0.819 Sum_probs=27.2
Q ss_pred ccccccCCCcEEEeeCCCeEEEEEcCCCC
Q 002001 271 LSKSMLENNKCYLLDRGSEVFVWVGRVTQ 299 (983)
Q Consensus 271 l~q~~L~~d~vyILD~g~eIyVWiGk~as 299 (983)
++-+.|+....||+|||.++|+|+|+++.
T Consensus 765 ltae~l~~~GlyL~D~g~~lfl~vg~~a~ 793 (887)
T KOG1985|consen 765 LTAELLSRRGLYLMDTGTTLFLWVGSNAD 793 (887)
T ss_pred hHHHHhccCceEEEecCcEEEEEEcCCCC
Confidence 77889999999999999999999999975
No 22
>PLN00162 transport protein sec23; Provisional
Probab=78.21 E-value=5.9 Score=50.47 Aligned_cols=44 Identities=27% Similarity=0.481 Sum_probs=34.4
Q ss_pred CCCcEEEEEecCCceeEeeecccCccCCCCCCEEEEeCCCEEEEEEcC
Q 002001 621 RDPHLFTFSFNKGKFEVEEVYNFSQDDLLTEDILILDTHAEVFVWVGQ 668 (983)
Q Consensus 621 ~~prLF~~S~~~G~~~v~EI~~FsQdDL~~~dv~ILD~~~eIfVWiG~ 668 (983)
..|+||..++.. - -+-...+.+-|.++.|+|||++..|+||.|.
T Consensus 619 I~P~L~sy~~~~-~---P~pv~Ld~~si~~d~ilLLD~~f~vvi~~G~ 662 (761)
T PLN00162 619 IQPTLISYSFNG-P---PEPVLLDVASIAADRILLLDSYFSVVIFHGS 662 (761)
T ss_pred hCCeEEEecCCC-C---CcceecchhhccCCceEEEeCCCEEEEEecC
Confidence 679999888642 1 1123466777889999999999999999995
No 23
>PLN00162 transport protein sec23; Provisional
Probab=72.62 E-value=14 Score=47.09 Aligned_cols=82 Identities=20% Similarity=0.179 Sum_probs=52.0
Q ss_pred CCCeEEEEe-CCceeEEEccccccccCCCcEEEeeCCCeEEEEEcCCCC------------HHHHHH----HHHHHHHHH
Q 002001 252 TPPKLYSIE-DSQVKIVEGELSKSMLENNKCYLLDRGSEVFVWVGRVTQ------------VEERKA----ASQAAEEFI 314 (983)
Q Consensus 252 ~~~rLy~v~-~G~l~~~e~~l~q~~L~~d~vyILD~g~eIyVWiGk~as------------~~eRk~----A~~~A~~yi 314 (983)
..|+||.+. ++... -+.|+-+-|.+|.+||||+|..|+||.|.... ....+. ...-|++++
T Consensus 619 I~P~L~sy~~~~~P~--pv~Ld~~si~~d~ilLLD~~f~vvi~~G~~ia~w~~~~~~~~~~~~~~~~~l~~p~~~a~~~~ 696 (761)
T PLN00162 619 IQPTLISYSFNGPPE--PVLLDVASIAADRILLLDSYFSVVIFHGSTIAQWRKAGYHNQPEHEAFAQLLEAPQADAQAII 696 (761)
T ss_pred hCCeEEEecCCCCCc--ceecchhhccCCceEEEeCCCEEEEEecCcccchhhcCCCCCcchhhHHHHHHhHHHHHHHHH
Confidence 357888776 44322 22377788899999999999999999995321 111233 334455544
Q ss_pred HhcCCCCCceEEEecCCCCChhh
Q 002001 315 SSQNRPKSIRITRVIQGYETYAF 337 (983)
Q Consensus 315 ~~~~rp~~t~v~~V~eG~Ep~~F 337 (983)
+ .|...+.+.+..||.-.+-|
T Consensus 697 ~--~Rfp~Pr~i~~~~~~SqaRf 717 (761)
T PLN00162 697 K--ERFPVPRLVVCDQHGSQARF 717 (761)
T ss_pred h--cCCCCCeEEEeCCCCcHHHH
Confidence 3 45444667777777755544
No 24
>PF00241 Cofilin_ADF: Cofilin/tropomyosin-type actin-binding protein; InterPro: IPR002108 The actin-depolymerising factor homology (ADF-H) domain is an ~150-amino acid motif that is present in three phylogenetically distinct classes of eukaryotic actin-binding proteins [, , ]: ADF/cofilins, which include ADF, cofilin, destrin, actophorin, coactosin, depactin and glia maturation factors (GMFs) beta and gamma. ADF/cofilins are small actin-binding proteins composed of a single ADF-H domain. They bind both actin-monomers and filaments and promote rapid filament turnover in cells by depolymerising/fragmenting actin filaments. ADF/cofilins bind ADP-actin with higher affinity than ATP-actin and inhibit the spontaneous nucleotide exchange on actin monomers Twinfilins, which are actin monomer-binding proteins that are composed of two ADF-H domains Abp1/Drebrins, which are relatively large proteins composed of an N-terminal ADF-H domain followed by a variable region and a C-terminal SH3 domain. Abp1/Drebrins interact only with actin filaments and do not promote filament depolymerisation or fragmentation Although these proteins are biochemically distinct and play different roles in actin dynamics, they all appear to use the ADF-H domain for their interactions with actin. The ADF-H domain consists of a six-stranded mixed beta-sheet in which the four central strands (beta2-beta5) are anti-parallel and the two edge strands (beta1 and beta6) run parallel with the neighbouring strands. The sheet is surrounded by two alpha-helices on each side [, , ].; GO: 0003779 actin binding, 0005622 intracellular; PDB: 1AK6_A 1AK7_A 1V6F_A 2L72_A 1CFY_A 1QPV_A 1COF_A 1TVJ_A 1X67_A 3L50_A ....
Probab=53.79 E-value=48 Score=32.05 Aligned_cols=55 Identities=13% Similarity=0.358 Sum_probs=37.9
Q ss_pred ceeeeCcEEEEEEeee---cCCCCcceEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCC
Q 002001 413 GKFYSGDCYIVLYTYH---SGDRKEDYFLCCWFGKDSIEEDQKMATRLANTMCNSLKG 467 (983)
Q Consensus 413 G~FysgDcYIVlytY~---~~~~~~~~~iy~W~G~~ss~de~~~aa~~a~eld~~l~g 467 (983)
.+|-..+|.-++|.|. .+..+...++.+|.+..++..++..-|..-..|.+.+++
T Consensus 47 ~~l~~~~p~y~~~~~~~~~~~~~~~k~vfI~w~P~~~~vk~km~yas~k~~l~~~l~~ 104 (127)
T PF00241_consen 47 SHLPDDEPRYILYRFEYTHKGSRRSKLVFIYWCPDNAPVKEKMLYASSKASLKKKLGG 104 (127)
T ss_dssp HCSCTTSEEEEEEEEEEEETTSEEEEEEEEEEESTTS-HHHHHHHHHHHHHHHHHCTT
T ss_pred HhcccCCcEEEEEEeeecccCCCCceEEEEEEecCCccHHHhhhhHHhHHHHHHHhCC
Confidence 3444566555566553 344556778889999999999998767666677777876
No 25
>KOG3655 consensus Drebrins and related actin binding proteins [Cytoskeleton]
Probab=52.47 E-value=29 Score=41.03 Aligned_cols=61 Identities=15% Similarity=0.139 Sum_probs=50.1
Q ss_pred cCCCCcceEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCCCeE--EEeecCCCCHHHHhhcCC
Q 002001 429 SGDRKEDYFLCCWFGKDSIEEDQKMATRLANTMCNSLKGRPVQ--GRIFQGREPPQFVALFQP 489 (983)
Q Consensus 429 ~~~~~~~~~iy~W~G~~ss~de~~~aa~~a~eld~~l~g~~vq--~Rv~QGkEp~~Fl~iF~~ 489 (983)
+.++...++|-.|+|..+..--++.++.++..+.+.|+|-.|+ +|...-=++..|+.-...
T Consensus 73 ~~s~l~KfvLI~W~GE~vp~~Rka~~ath~a~v~~~lkg~hV~i~Ar~e~Dld~d~i~~~ls~ 135 (484)
T KOG3655|consen 73 PMSGLPKFVLINWIGEGVPVLRKAKCATHKALVKNFLKGFHVEINARSEEDLDEDAIREKLSK 135 (484)
T ss_pred cccCCcceEEEEecCCccHHHhhhhhcchHHHHHHHhhcceEEEeccchhhcCHHHHHHHHHh
Confidence 5667789999999999999888899999988888999987764 677777777777776654
No 26
>smart00102 ADF Actin depolymerisation factor/cofilin -like domains. Severs actin filaments and binds to actin monomers.
Probab=42.53 E-value=74 Score=30.93 Aligned_cols=56 Identities=16% Similarity=0.353 Sum_probs=38.3
Q ss_pred ceeeeCcEEEEEEeee-c--CCCCcceEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCC
Q 002001 413 GKFYSGDCYIVLYTYH-S--GDRKEDYFLCCWFGKDSIEEDQKMATRLANTMCNSLKGR 468 (983)
Q Consensus 413 G~FysgDcYIVlytY~-~--~~~~~~~~iy~W~G~~ss~de~~~aa~~a~eld~~l~g~ 468 (983)
..|-..+|--++|.|. + +..+...++.+|.|..++..++...|.....+.+.++|-
T Consensus 47 ~~l~~~~~ry~~~~~~~~~~~~~~~k~vfI~w~P~~a~~~~km~yas~k~~l~~~l~~~ 105 (127)
T smart00102 47 EELPEDECRYALYDYKFTTEESKKSKIVFIFWSPDGAPVKSKMLYASSKDTLKKELGGI 105 (127)
T ss_pred HhCCccCceEEEEEeecccCCCccccEEEEEECCCCCCHHHHHHHHHHHHHHHHHcCCc
Confidence 3445556644455663 1 234567889999999999999987776666777777753
No 27
>KOG3655 consensus Drebrins and related actin binding proteins [Cytoskeleton]
Probab=39.93 E-value=49 Score=39.28 Aligned_cols=109 Identities=14% Similarity=0.203 Sum_probs=76.6
Q ss_pred cCChhhhcCCccccEEEEEEECc----eeeeCCCCCcCee---eeCc-----EEEEEEeecCCCCCceEEEEEEecCCCC
Q 002001 7 SLDPAFQGAGQRVGTEIWRIENF----QPVPLPKSEHGKF---YMGD-----CYIVLQTTPGKGGAYLYDIHFWIGKDTS 74 (983)
Q Consensus 7 ~~d~~f~~~g~~~gl~IWrIe~~----~~v~vp~~~~G~F---y~gD-----~YIVL~t~~~~~~~~~~~Ih~W~G~~ss 74 (983)
.++.+|..+-....-..|-|-.+ ....+....+|.| .... .|+++.+....++...++|-.|+|.+++
T Consensus 12 ei~aaY~~v~~d~~dt~WaiF~Yeg~s~~~~~~~s~~~~~~e~~~df~~~kv~yg~~rv~D~~s~l~KfvLI~W~GE~vp 91 (484)
T KOG3655|consen 12 EIRAAYERVVDDSSDTDWALFTYEGNSNDLKVAGSGEGGLEEFLGDFDSGKVMYGFCRVKDPMSGLPKFVLINWIGEGVP 91 (484)
T ss_pred HHHHHHHHhhccCCCceeEEEeecCCccceeeeccccccHHHHhhhcccCceeEEEEEecCcccCCcceEEEEecCCccH
Confidence 36667777766666789998665 3344555555553 2221 4777666555556667899999999999
Q ss_pred hhhhhhHHHHHHHHHHHhCCcceEE--EeeccCCCHHHHhhcC
Q 002001 75 QDEAGTAAIKTVELDAVLGGRAVQH--RELQGHESDKFLSYFK 115 (983)
Q Consensus 75 ~de~g~AA~~aveLd~~Lgg~~vq~--Re~QG~Es~~FLs~Fk 115 (983)
.-.++.+|.+...+.+.|.|-.|++ |...--+.+.|+.-..
T Consensus 92 ~~Rka~~ath~a~v~~~lkg~hV~i~Ar~e~Dld~d~i~~~ls 134 (484)
T KOG3655|consen 92 VLRKAKCATHKALVKNFLKGFHVEINARSEEDLDEDAIREKLS 134 (484)
T ss_pred HHhhhhhcchHHHHHHHhhcceEEEeccchhhcCHHHHHHHHH
Confidence 9999999999999999999987763 4444455666665554
No 28
>smart00102 ADF Actin depolymerisation factor/cofilin -like domains. Severs actin filaments and binds to actin monomers.
Probab=37.44 E-value=1.3e+02 Score=29.13 Aligned_cols=77 Identities=14% Similarity=0.068 Sum_probs=48.9
Q ss_pred ccEEEEEEECc--eeeeCCCCC----c----Ceeee-CcEEEEEEeecC--CCCCceEEEEEEecCCCChhhhhhHHHHH
Q 002001 19 VGTEIWRIENF--QPVPLPKSE----H----GKFYM-GDCYIVLQTTPG--KGGAYLYDIHFWIGKDTSQDEAGTAAIKT 85 (983)
Q Consensus 19 ~gl~IWrIe~~--~~v~vp~~~----~----G~Fy~-gD~YIVL~t~~~--~~~~~~~~Ih~W~G~~ss~de~g~AA~~a 85 (983)
...-||+|... .++...... + ..|-+ ..+|+|+..-.. .+..-...+.+|.+..++.-++..-|..-
T Consensus 16 ~~~vi~~i~~~~~~i~v~~~~~~~~~~~el~~~l~~~~~ry~~~~~~~~~~~~~~~k~vfI~w~P~~a~~~~km~yas~k 95 (127)
T smart00102 16 HSAIIFKIDKDNEEIVVEEVGSTEDSYDEFVEELPEDECRYALYDYKFTTEESKKSKIVFIFWSPDGAPVKSKMLYASSK 95 (127)
T ss_pred ceEEEEEEecCCCEEEEEecCCCCCCHHHHHHhCCccCceEEEEEeecccCCCccccEEEEEECCCCCCHHHHHHHHHHH
Confidence 56889999864 222212111 1 12333 356888864221 12233467788999999999988888877
Q ss_pred HHHHHHhCCc
Q 002001 86 VELDAVLGGR 95 (983)
Q Consensus 86 veLd~~Lgg~ 95 (983)
..|-..|+|-
T Consensus 96 ~~l~~~l~~~ 105 (127)
T smart00102 96 DTLKKELGGI 105 (127)
T ss_pred HHHHHHcCCc
Confidence 8888889873
No 29
>PF00241 Cofilin_ADF: Cofilin/tropomyosin-type actin-binding protein; InterPro: IPR002108 The actin-depolymerising factor homology (ADF-H) domain is an ~150-amino acid motif that is present in three phylogenetically distinct classes of eukaryotic actin-binding proteins [, , ]: ADF/cofilins, which include ADF, cofilin, destrin, actophorin, coactosin, depactin and glia maturation factors (GMFs) beta and gamma. ADF/cofilins are small actin-binding proteins composed of a single ADF-H domain. They bind both actin-monomers and filaments and promote rapid filament turnover in cells by depolymerising/fragmenting actin filaments. ADF/cofilins bind ADP-actin with higher affinity than ATP-actin and inhibit the spontaneous nucleotide exchange on actin monomers Twinfilins, which are actin monomer-binding proteins that are composed of two ADF-H domains Abp1/Drebrins, which are relatively large proteins composed of an N-terminal ADF-H domain followed by a variable region and a C-terminal SH3 domain. Abp1/Drebrins interact only with actin filaments and do not promote filament depolymerisation or fragmentation Although these proteins are biochemically distinct and play different roles in actin dynamics, they all appear to use the ADF-H domain for their interactions with actin. The ADF-H domain consists of a six-stranded mixed beta-sheet in which the four central strands (beta2-beta5) are anti-parallel and the two edge strands (beta1 and beta6) run parallel with the neighbouring strands. The sheet is surrounded by two alpha-helices on each side [, , ].; GO: 0003779 actin binding, 0005622 intracellular; PDB: 1AK6_A 1AK7_A 1V6F_A 2L72_A 1CFY_A 1QPV_A 1COF_A 1TVJ_A 1X67_A 3L50_A ....
Probab=33.06 E-value=1.5e+02 Score=28.58 Aligned_cols=87 Identities=23% Similarity=0.316 Sum_probs=53.1
Q ss_pred ccEEEEEEECc-eeeeCCCCC--cCe-------ee-eCcEEEEEEee-cCCCCC-ceEEEEEEecCCCChhhhhhHHHHH
Q 002001 19 VGTEIWRIENF-QPVPLPKSE--HGK-------FY-MGDCYIVLQTT-PGKGGA-YLYDIHFWIGKDTSQDEAGTAAIKT 85 (983)
Q Consensus 19 ~gl~IWrIe~~-~~v~vp~~~--~G~-------Fy-~gD~YIVL~t~-~~~~~~-~~~~Ih~W~G~~ss~de~g~AA~~a 85 (983)
...-+|+|++. ..+.|.+.. .+. |= +.-||+|+.-. ..+++. ....+.+|++.+++.-++..-|..-
T Consensus 16 ~~~i~~~i~~~~~~i~v~~~g~~~~~~~el~~~l~~~~p~y~~~~~~~~~~~~~~~k~vfI~w~P~~~~vk~km~yas~k 95 (127)
T PF00241_consen 16 TRWIIFKIDDEKEEIVVEKSGSEGGSFDELLSHLPDDEPRYILYRFEYTHKGSRRSKLVFIYWCPDNAPVKEKMLYASSK 95 (127)
T ss_dssp CSEEEEEEETTSTEEEEEEEEEESSHHHHHHHCSCTTSEEEEEEEEEEEETTSEEEEEEEEEEESTTS-HHHHHHHHHHH
T ss_pred ceEEEEEEeCCCcEEEEEeccCCCCCHHHHHHhcccCCcEEEEEEeeecccCCCCceEEEEEEecCCccHHHhhhhHHhH
Confidence 45788999887 333333221 111 32 34588887532 222332 3455568999999999988777777
Q ss_pred HHHHHHhCCcceEEEeeccCCCH
Q 002001 86 VELDAVLGGRAVQHRELQGHESD 108 (983)
Q Consensus 86 veLd~~Lgg~~vq~Re~QG~Es~ 108 (983)
..|-..|++ .+.++|.++..
T Consensus 96 ~~l~~~l~~---~~~~~~~~d~~ 115 (127)
T PF00241_consen 96 ASLKKKLGG---IHIEIQASDPD 115 (127)
T ss_dssp HHHHHHCTT---EEEEEEESSGG
T ss_pred HHHHHHhCC---ceEEEEECChH
Confidence 788888988 34466666544
No 30
>cd00013 ADF Actin depolymerisation factor/cofilin -like domains; present in a family of essential eukaryotic actin regulatory proteins; these proteins enhance the turnover rate of actin and interact with actin monomers as well as actin filaments.
Probab=31.44 E-value=1.9e+02 Score=27.91 Aligned_cols=55 Identities=16% Similarity=0.379 Sum_probs=35.7
Q ss_pred eeeeCcEEEEEEeee-c--CCCCcceEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCC
Q 002001 414 KFYSGDCYIVLYTYH-S--GDRKEDYFLCCWFGKDSIEEDQKMATRLANTMCNSLKGR 468 (983)
Q Consensus 414 ~FysgDcYIVlytY~-~--~~~~~~~~iy~W~G~~ss~de~~~aa~~a~eld~~l~g~ 468 (983)
+|-..+|.-++|.|. . +..+...++.+|.+..++..++..-+..-..+.+.++|-
T Consensus 54 ~l~~~~~~y~~~~~~~~~~~~~~~k~vfI~w~P~~a~~k~km~yas~k~~l~~~l~~~ 111 (132)
T cd00013 54 ELPEDECRYALYDYDFTTEGSKKSKIVFIYWSPETAPVKSKMLYASSKAALKRELVGI 111 (132)
T ss_pred hCCcCCceEEEEEecccCCCccccCEEEEEECCCCCChhhhhhhHHHHHHHHHhcCCc
Confidence 444455544455553 1 134567899999999999998876555445555656654
No 31
>PLN03216 actin depolymerizing factor; Provisional
Probab=29.97 E-value=3.5e+02 Score=27.09 Aligned_cols=107 Identities=18% Similarity=0.157 Sum_probs=0.0
Q ss_pred CCCccccCChhhh------cCCccccEEEEEEECc--eeeeCCCCCcCeeeeC---------cEEEEEEe-ecCCCCCce
Q 002001 1 MSTSAKSLDPAFQ------GAGQRVGTEIWRIENF--QPVPLPKSEHGKFYMG---------DCYIVLQT-TPGKGGAYL 62 (983)
Q Consensus 1 ~~~~~~~~d~~f~------~~g~~~gl~IWrIe~~--~~v~vp~~~~G~Fy~g---------D~YIVL~t-~~~~~~~~~ 62 (983)
||.|...+++... ..++.-...|.+|.+. +.+......-|..|+. .+|+|+.- +....+..+
T Consensus 5 m~~SGi~v~~~c~~~f~~lk~~k~~r~iifkI~~~~~~ivv~~~~~~~~~~~d~~~~L~~~~~rY~vyd~~~~~~~g~~~ 84 (141)
T PLN03216 5 MATTGMWVTDECKNSFMEMKWKKVHRYIVFKIDEKSRKVTVDKVGGPGESYDDLAASLPTDDCRYAVFDFDFVTVDNCRK 84 (141)
T ss_pred ecCCCCeeCHHHHHHHHHHHhCCCceEEEEEEcCCCCEEEEEecCCCCCCHHHHHHhCCCCCCeEEEEEeEeccCCCCcc
Q ss_pred EEEEE--EecCCCChhhhhhHHHHHHHHHHHhCCcceEEEeeccCCCHHH
Q 002001 63 YDIHF--WIGKDTSQDEAGTAAIKTVELDAVLGGRAVQHRELQGHESDKF 110 (983)
Q Consensus 63 ~~Ih~--W~G~~ss~de~g~AA~~aveLd~~Lgg~~vq~Re~QG~Es~~F 110 (983)
..+.| |...+++.-++=.-|.--.-|-..|+|- ..++|.++...+
T Consensus 85 ~klvFI~w~Pd~a~vk~KMlYAssK~~lk~~l~gi---~~~iqatd~~el 131 (141)
T PLN03216 85 SKIFFIAWSPEASRIRAKMLYATSKDGLRRVLDGV---HYELQATDPTEM 131 (141)
T ss_pred cCEEEEEECCCCCCHHHHHHHHHHHHHHHHHhcCC---eEEEEECChHhc
No 32
>cd00013 ADF Actin depolymerisation factor/cofilin -like domains; present in a family of essential eukaryotic actin regulatory proteins; these proteins enhance the turnover rate of actin and interact with actin monomers as well as actin filaments.
Probab=25.99 E-value=2.3e+02 Score=27.38 Aligned_cols=60 Identities=13% Similarity=0.093 Sum_probs=39.1
Q ss_pred CcEEEEEEeecC-C-CCCceEEEEEEecCCCChhhhhhHHHHHHHHHHHhCCcceEEEeeccCCC
Q 002001 45 GDCYIVLQTTPG-K-GGAYLYDIHFWIGKDTSQDEAGTAAIKTVELDAVLGGRAVQHRELQGHES 107 (983)
Q Consensus 45 gD~YIVL~t~~~-~-~~~~~~~Ih~W~G~~ss~de~g~AA~~aveLd~~Lgg~~vq~Re~QG~Es 107 (983)
..||+++..... + +......+.+|.+..++.-++..-|..-..|-..|+|- +.+++..+.
T Consensus 59 ~~~y~~~~~~~~~~~~~~~k~vfI~w~P~~a~~k~km~yas~k~~l~~~l~~~---~~~i~a~~~ 120 (132)
T cd00013 59 ECRYALYDYDFTTEGSKKSKIVFIYWSPETAPVKSKMLYASSKAALKRELVGI---QVEVQATDP 120 (132)
T ss_pred CceEEEEEecccCCCccccCEEEEEECCCCCChhhhhhhHHHHHHHHHhcCCc---eEEEEECCh
Confidence 356888764321 1 23345788899999999988887766666777778764 333444443
Done!