BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002002
(983 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free
pdb|3KWU|A Chain A, Munc13-1 C2b-Domain, Calcium Bound
Length = 148
Score = 55.8 bits (133), Expect = 1e-07, Method: Composition-based stats.
Identities = 41/131 (31%), Positives = 68/131 (51%), Gaps = 13/131 (9%)
Query: 8 KLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHD-AE 66
K+ + V A+ L KD G++ YV V ++RTKT + +LNP W+E F H+ ++
Sbjct: 18 KISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSD 77
Query: 67 SMPTEILEINLYND-----KKTGKRST--FLGKVKIAGSTFAKVGSESSVYYPLEKRSVF 119
+ +L+ + +D K+ KR + FLG+ I T + E V+Y L+KR+
Sbjct: 78 RIKVRVLDED--DDIKSRVKQRFKRESDDFLGQTIIEVRTLS---GEMDVWYNLDKRTDK 132
Query: 120 SQIKGEIGLKV 130
S + G I L +
Sbjct: 133 SAVSGAIRLHI 143
Score = 37.7 bits (86), Expect = 0.030, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 603 VKTKDGTRGTTDAYVVAKYGPKWVRTRTILDRFNPRWNEQYTWDVYDPCTVLTIGVFD 660
++ KD T G++D YV + G RT+TI NP W E + ++ ++ + + V D
Sbjct: 29 LQAKDKT-GSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDRIKVRVLD 85
>pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human
Mctp2 Protein
Length = 133
Score = 49.7 bits (117), Expect = 9e-06, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 5/87 (5%)
Query: 9 LIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHDAESM 68
L V+V A +L+ D G + + +++ R +T T +++LNP+W++ F + D
Sbjct: 15 LQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIH-- 72
Query: 69 PTEILEINLYNDKKTGKRSTFLGKVKI 95
++LE+ ++ D+ K FLGKV I
Sbjct: 73 --DVLEVTVF-DEDGDKPPDFLGKVAI 96
Score = 43.5 bits (101), Expect = 5e-04, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 587 IGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILDRFNPRWNEQYTWD 646
+G+L+V + A +LL G +D + + + G ++T T+ NP WN+ +T+
Sbjct: 12 VGILQVKVLKAADLLAADFS----GKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFP 67
Query: 647 VYDPCTVLTIGVFD-NGRYKRDEAGK 671
+ D VL + VFD +G D GK
Sbjct: 68 IKDIHDVLEVTVFDEDGDKPPDFLGK 93
>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain
Complexed With Ca2+ And Ptdins(4,5)p2
pdb|3RDJ|A Chain A, Rat Pkc C2 Domain Apo
pdb|3TWY|A Chain A, Rat Pkc C2 Domain Bound To Pb
Length = 137
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 54/107 (50%), Gaps = 8/107 (7%)
Query: 2 AESCNRKLIVEVCNAKNLMPKDGQGTASAYVIVDF-----DGQRRRTKTKFRDLNPQWDE 56
AE + KL V V +AKNL+P D G + YV + + +++TKT LNPQW+E
Sbjct: 11 AEVTDEKLHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNE 70
Query: 57 RLEFLVHDAESMPTEILEINLYNDKKTGKRSTFLGKVKIAGSTFAKV 103
F + ++ L + +++ +T R+ F+G + S K+
Sbjct: 71 SFTFKLKPSDK--DRRLSVEIWDWDRTT-RNDFMGSLSFGVSELMKM 114
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 54/126 (42%), Gaps = 38/126 (30%)
Query: 550 GRIHLRACLEGGYHVLDEAAHVTSDVRAAAKQLAKSPIGLLEVGIRGATNLLPVKTKDGT 609
GRI+L+A V DE HVT +R A NL+P+
Sbjct: 5 GRIYLKA------EVTDEKLHVT---------------------VRDAKNLIPM----DP 33
Query: 610 RGTTDAYVVAKYGP-----KWVRTRTILDRFNPRWNEQYTWDVY--DPCTVLTIGVFDNG 662
G +D YV K P +T+TI NP+WNE +T+ + D L++ ++D
Sbjct: 34 NGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLKPSDKDRRLSVEIWDWD 93
Query: 663 RYKRDE 668
R R++
Sbjct: 94 RTTRND 99
>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With
Ca2+ And Phosphatidylserine
Length = 139
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 54/107 (50%), Gaps = 8/107 (7%)
Query: 2 AESCNRKLIVEVCNAKNLMPKDGQGTASAYVIVDF-----DGQRRRTKTKFRDLNPQWDE 56
AE + KL V V +AKNL+P D G + YV + + +++TKT LNPQW+E
Sbjct: 12 AEVTDEKLHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNE 71
Query: 57 RLEFLVHDAESMPTEILEINLYNDKKTGKRSTFLGKVKIAGSTFAKV 103
F + ++ L + +++ +T R+ F+G + S K+
Sbjct: 72 SFTFKLKPSDK--DRRLSVEIWDWDRTT-RNDFMGSLSFGVSELMKM 115
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 54/126 (42%), Gaps = 38/126 (30%)
Query: 550 GRIHLRACLEGGYHVLDEAAHVTSDVRAAAKQLAKSPIGLLEVGIRGATNLLPVKTKDGT 609
GRI+L+A V DE HVT +R A NL+P+
Sbjct: 6 GRIYLKA------EVTDEKLHVT---------------------VRDAKNLIPM----DP 34
Query: 610 RGTTDAYVVAKYGP-----KWVRTRTILDRFNPRWNEQYTWDVY--DPCTVLTIGVFDNG 662
G +D YV K P +T+TI NP+WNE +T+ + D L++ ++D
Sbjct: 35 NGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLKPSDKDRRLSVEIWDWD 94
Query: 663 RYKRDE 668
R R++
Sbjct: 95 RTTRND 100
>pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo
C2a- Domain
Length = 142
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 64/124 (51%), Gaps = 16/124 (12%)
Query: 8 KLIVEVCNAKNLMPKDGQGTASAYVIVDF---DGQ-----------RRRTKTKFRDLNPQ 53
LI+ + A+NL+P+D G + +V V GQ +RRTK + LNP+
Sbjct: 19 NLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPE 78
Query: 54 WDERLEFLVHDAESMPTEILEINLYNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPL 113
W++ + + E + + LE+ ++ D + FLG+V I S+ + + + + +YPL
Sbjct: 79 WNQTVIYKSISMEQLMKKTLEVTVW-DYDRFSSNDFLGEVLIDLSSTSHLDN-TPRWYPL 136
Query: 114 EKRS 117
++++
Sbjct: 137 KEQT 140
>pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C
Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution
Length = 140
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 8/106 (7%)
Query: 2 AESCNRKLIVEVCNAKNLMPKDGQGTASAYVIVDF-----DGQRRRTKTKFRDLNPQWDE 56
AE + KL V V +AKNL+P D G + YV + + +++TKT LNPQW+E
Sbjct: 13 AEVADEKLHVTVRDAKNLIPXDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNE 72
Query: 57 RLEFLVHDAESMPTEILEINLYNDKKTGKRSTFLGKVKIAGSTFAK 102
F + ++ L + +++ +T R+ F G + S K
Sbjct: 73 SFTFKLKPSDK--DRRLSVEIWDWDRT-TRNDFXGSLSFGVSELXK 115
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 53/126 (42%), Gaps = 38/126 (30%)
Query: 550 GRIHLRACLEGGYHVLDEAAHVTSDVRAAAKQLAKSPIGLLEVGIRGATNLLPVKTKDGT 609
GRI+L+A V DE HVT +R A NL+P
Sbjct: 7 GRIYLKA------EVADEKLHVT---------------------VRDAKNLIPX----DP 35
Query: 610 RGTTDAYVVAKYGP-----KWVRTRTILDRFNPRWNEQYTWDVY--DPCTVLTIGVFDNG 662
G +D YV K P +T+TI NP+WNE +T+ + D L++ ++D
Sbjct: 36 NGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLKPSDKDRRLSVEIWDWD 95
Query: 663 RYKRDE 668
R R++
Sbjct: 96 RTTRND 101
>pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta)
pdb|1A25|B Chain B, C2 Domain From Protein Kinase C (Beta)
Length = 149
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 14/104 (13%)
Query: 9 LIVEVCNAKNLMPKDGQGTASAYVIVDF-----DGQRRRTKTKFRDLNPQWDERLEFLVH 63
LIV V +AKNL+P D G + YV + +++TKT LNP+W+E F +
Sbjct: 33 LIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLK 92
Query: 64 DAES---MPTEILEINLYNDKKTGKRSTFLGKVKIAGSTFAKVG 104
+++ + EI + +L + R+ F+G + S K G
Sbjct: 93 ESDKDRRLSVEIWDWDLTS------RNDFMGSLSFGISELQKAG 130
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 9/60 (15%)
Query: 589 LLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP-----KWVRTRTILDRFNPRWNEQY 643
+L V +R A NL+P+ G +D YV K P +T+TI NP WNE +
Sbjct: 32 VLIVVVRDAKNLVPM----DPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETF 87
>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein
Kinase C Beta Ii
Length = 674
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 14/104 (13%)
Query: 9 LIVEVCNAKNLMPKDGQGTASAYVIVDF-----DGQRRRTKTKFRDLNPQWDERLEFLVH 63
LIV V +AKNL+P D G + YV + +++TKT LNP+W+E F +
Sbjct: 174 LIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLK 233
Query: 64 DAES---MPTEILEINLYNDKKTGKRSTFLGKVKIAGSTFAKVG 104
+++ + EI + +L + R+ F+G + S K G
Sbjct: 234 ESDKDRRLSVEIWDWDLTS------RNDFMGSLSFGISELQKAG 271
Score = 33.1 bits (74), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 9/64 (14%)
Query: 589 LLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP-----KWVRTRTILDRFNPRWNEQY 643
+L V +R A NL+P+ G +D YV K P +T+TI NP WNE +
Sbjct: 173 VLIVVVRDAKNLVPMDP----NGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETF 228
Query: 644 TWDV 647
+ +
Sbjct: 229 RFQL 232
>pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The
C2a Domain Of Rabphilin-3a
Length = 140
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 6/96 (6%)
Query: 6 NRKLIVEVCNAKNLMPKDGQGTASAYVIVDF-----DGQRRRTKTKFRDLNPQWDERLEF 60
N L + AK L P D G A YV + + RTKT NP W+E L++
Sbjct: 26 NSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQY 85
Query: 61 LVHDAESMPTEILEINLYNDKKTGKRSTFLGKVKIA 96
E M + L I++ ++ K G + F+G+ + +
Sbjct: 86 HGITEEDMQRKTLRISVCDEDKFG-HNEFIGETRFS 120
>pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a
Length = 142
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 6/96 (6%)
Query: 6 NRKLIVEVCNAKNLMPKDGQGTASAYVIVDF-----DGQRRRTKTKFRDLNPQWDERLEF 60
N L + AK L P D G A YV + + RTKT NP W+E L++
Sbjct: 28 NSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQY 87
Query: 61 LVHDAESMPTEILEINLYNDKKTGKRSTFLGKVKIA 96
E M + L I++ ++ K G + F+G+ + +
Sbjct: 88 HGITEEDMQRKTLRISVCDEDKFG-HNEFIGETRFS 122
>pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain
Length = 510
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 51/109 (46%), Gaps = 12/109 (11%)
Query: 579 AKQLAKSPIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILDRFNPR 638
A+ S IG L V + AT L K G ++ Y G + TRTI D NP+
Sbjct: 378 ARSQKTSGIGRLMVHVIEATELKACKPN----GKSNPYCEISMGSQSYTTRTIQDTLNPK 433
Query: 639 WN---EQYTWDVYDPCTVLTIGVFDNGRYKRDE-AGKPGKDVRVGKIRV 683
WN + + D+Y VL + +FD ++ D+ G+ ++ V KIR
Sbjct: 434 WNFNCQFFIKDLYQ--DVLCLTLFDRDQFSPDDFLGRT--EIPVAKIRT 478
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 56/120 (46%), Gaps = 8/120 (6%)
Query: 8 KLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHDAES 67
+L+V V A L G ++ Y + Q T+T LNP+W+ +F + D
Sbjct: 388 RLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKD--- 444
Query: 68 MPTEILEINLYNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQI-KGEI 126
+ ++L + L+ D+ FLG+ +I AK+ +E P+ +R + ++ GE+
Sbjct: 445 LYQDVLCLTLF-DRDQFSPDDFLGRTEIP---VAKIRTEQESKGPMTRRLLLHEVPTGEV 500
>pdb|2BWQ|A Chain A, Crystal Structure Of The Rim2 C2a-Domain At 1.4 Angstrom
Resolution
Length = 129
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 6/103 (5%)
Query: 3 ESCNRKLIVEVCNAKNLMPKDGQGTASAYVIVDF-----DGQRRRTKTKFRDLNPQWDER 57
+ +LIV + AK+L ++ + YV + F D +RRTKT + L P+W++
Sbjct: 14 DKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQT 73
Query: 58 LEFLVHDAESMPTEILEINLYNDKKT-GKRSTFLGKVKIAGST 99
+ +LEI L++ + + S FLG++ I T
Sbjct: 74 FIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELET 116
>pdb|1V27|A Chain A, Solution Structure Of The First C2 Domain Of Rim2
Length = 141
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 6/103 (5%)
Query: 3 ESCNRKLIVEVCNAKNLMPKDGQGTASAYVIVDF-----DGQRRRTKTKFRDLNPQWDER 57
+ +LIV + AK+L ++ + YV + F D +RRTKT + L P+W++
Sbjct: 17 DKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQT 76
Query: 58 LEFLVHDAESMPTEILEINLYNDKKT-GKRSTFLGKVKIAGST 99
+ +LEI L++ + + S FLG++ I T
Sbjct: 77 FIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELET 119
>pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
pdb|3B7Y|B Chain B, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
Length = 153
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 606 KDGTRGTTDAYV-VAKYGP-----KWVRTRTILDRFNPRWNEQYTWDVYDPCTVLTIGVF 659
K G +D YV V Y P V+T+TI NP+WNE+ + V+ L VF
Sbjct: 34 KKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQQHRLLFEVF 93
Query: 660 DNGRYKRDE 668
D R RD+
Sbjct: 94 DENRLTRDD 102
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 59/142 (41%), Gaps = 16/142 (11%)
Query: 3 ESCNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRR------RTKTKFRDLNPQWDE 56
E +R + V V L KD G + YV V +TKT + LNP+W+E
Sbjct: 16 EENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNE 75
Query: 57 RLEFLVHDAESMPTEILEINLYNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYP---- 112
+ F VH + L ++++ + R FLG+V + Y
Sbjct: 76 EILFRVHPQQHR----LLFEVFDENRL-TRDDFLGQVDVPLYPLPTENPRLERPYTFKDF 130
Query: 113 -LEKRSVFSQIKGEIGLKVYYI 133
L RS S++KG + LK+ Y+
Sbjct: 131 VLHPRSHKSRVKGYLRLKMTYL 152
>pdb|2JQZ|A Chain A, Solution Structure Of The C2 Domain Of Human Smurf2
Length = 131
Score = 39.3 bits (90), Expect = 0.012, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 9/92 (9%)
Query: 8 KLIVEVCNAKNLMPKDGQGTASAY--VIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHDA 65
KL + V AKNL+ KD + V+VD GQ T T L+P+W++ + + +
Sbjct: 4 KLRLTVLCAKNLVKKDFFRLPDPFAKVVVDGSGQCHSTDTVKNTLDPKWNQHYDLYIGKS 63
Query: 66 ESMPTEILEINLYNDKKTGKR--STFLGKVKI 95
+S + I+++N KK K+ + FLG V++
Sbjct: 64 DS-----VTISVWNHKKIHKKQGAGFLGCVRL 90
>pdb|3PYC|A Chain A, Crystal Structure Of Human Smurf1 C2 Domain
Length = 132
Score = 38.5 bits (88), Expect = 0.017, Method: Composition-based stats.
Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 9/100 (9%)
Query: 8 KLIVEVCNAKNLMPKDGQGTASAY--VIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHDA 65
K+ + V AKNL KD + ++VD GQ T T L+P+W++ + V
Sbjct: 6 KIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKT 65
Query: 66 ESMPTEILEINLYNDKKTGKR--STFLGKVKIAGSTFAKV 103
+S + I+++N KK K+ + FLG V++ + +++
Sbjct: 66 DS-----ITISVWNHKKIHKKQGAGFLGCVRLLSNAISRL 100
>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3
Ubiquitin-Protein Ligase Nedd4-Like Protein
Length = 155
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
Query: 626 VRTRTILDRFNPRWNEQYTWDVYDPCTVLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRL 685
V+T+TI NP+WNE++ + V L VFD R RD+ +G++ V L
Sbjct: 62 VQTKTIKKTLNPKWNEEFYFRVNPSNHRLLFEVFDENRLTRDDF--------LGQVDVPL 113
Query: 686 STLDT 690
S L T
Sbjct: 114 SHLPT 118
Score = 36.6 bits (83), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 64/143 (44%), Gaps = 17/143 (11%)
Query: 3 ESCNRKLIVEVCNAKNLMPKDGQGTASAYVIVDF---DGQRR----RTKTKFRDLNPQWD 55
E +R L V+V + +L KD G + YV + D R +TKT + LNP+W+
Sbjct: 17 EGESRILRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALVQTKTIKKTLNPKWN 76
Query: 56 ERLEFLVHDAESMPTEILEINLYNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYP--- 112
E F V+ + L ++++ + R FLG+V + S Y
Sbjct: 77 EEFYFRVNPSNHR----LLFEVFDENRL-TRDDFLGQVDVPLSHLPTEDPTMERPYTFKD 131
Query: 113 --LEKRSVFSQIKGEIGLKVYYI 133
L RS S++KG + LK+ Y+
Sbjct: 132 FLLRPRSHKSRVKGFLRLKMAYM 154
>pdb|3M7F|B Chain B, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX
Length = 176
Score = 37.0 bits (84), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
Query: 611 GTTDAYV-VAKYGP-----KWVRTRTILDRFNPRWNEQYTWDVYDPCTVLTIGVFDNGRY 664
G +D YV V Y P V+T+TI NP+WNE+ + V + VFD R
Sbjct: 27 GASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLPQRHRILFEVFDENRL 86
Query: 665 KRDE 668
RD+
Sbjct: 87 TRDD 90
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 55/138 (39%), Gaps = 16/138 (11%)
Query: 7 RKLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRR------RTKTKFRDLNPQWDERLEF 60
R + V+V L KD G + YV V +TKT + LNP+W+E + F
Sbjct: 8 RVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILF 67
Query: 61 LVHDAESMPTEILEINLYNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYP-----LEK 115
V +P + D+ R FLG+V + Y L
Sbjct: 68 RV-----LPQRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHP 122
Query: 116 RSVFSQIKGEIGLKVYYI 133
RS S++KG + LK+ Y+
Sbjct: 123 RSHKSRVKGYLRLKMTYL 140
>pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin
Vii
Length = 141
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Query: 9 LIVEVCNAKNLMPKDGQGTASAYVIVDF---DGQRRRTKTKFRDLNPQWDERLEFLVHDA 65
L V++ A+ L KD GT+ +V + + TK K ++LNP W+E F
Sbjct: 28 LTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPY 87
Query: 66 ESMPTEILEINLYNDKKTGKRSTFLGKVKI 95
E + IL + + D R+ +G+V I
Sbjct: 88 EKVVQRILYLQVL-DYDRFSRNDPIGEVSI 116
>pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|B Chain B, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|C Chain C, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma
Length = 144
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 8/100 (8%)
Query: 8 KLIVEVCNAKNLMPKDGQGTASAYVIVDF-----DGQRRRTKTKFRDLNPQWDERLEFLV 62
++ V V A+NL+P D G + YV + + +++T+T LNP W+E F +
Sbjct: 21 EIHVTVGEARNLIPMDPNGLSDPYVKLKLIPDPRNLTKQKTRTVKATLNPVWNETFVFNL 80
Query: 63 HDAESMPTEILEINLYNDKKTGKRSTFLGKVKIAGSTFAK 102
+ L + +++ +T R+ F+G + S K
Sbjct: 81 KPGDV--ERRLSVEVWDWDRTS-RNDFMGAMSFGVSELLK 117
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 13/87 (14%)
Query: 590 LEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPK-----WVRTRTILDRFNPRWNEQYT 644
+ V + A NL+P+ G +D YV K P +TRT+ NP WNE +
Sbjct: 22 IHVTVGEARNLIPMDPN----GLSDPYVKLKLIPDPRNLTKQKTRTVKATLNPVWNETFV 77
Query: 645 WDVYDPCTV---LTIGVFDNGRYKRDE 668
+++ P V L++ V+D R R++
Sbjct: 78 FNL-KPGDVERRLSVEVWDWDRTSRND 103
>pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin
pdb|3HN8|B Chain B, Crystal Structure Of Synaptotagmin
pdb|3HN8|C Chain C, Crystal Structure Of Synaptotagmin
Length = 296
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 8 KLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRR---TKTKFRDLNPQWDERLEFLVHD 64
+L+V + A +L KD G + YV + R++ TK + LNP ++E +F V
Sbjct: 22 QLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPL 81
Query: 65 AESMPTEILEINLYNDKKTGKRSTFLGKV 93
AE + L ++Y D R +G+V
Sbjct: 82 AE-LAQRKLHFSVY-DFDRFSRHDLIGQV 108
>pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B
Length = 296
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 8 KLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRR---TKTKFRDLNPQWDERLEFLVHD 64
+L+V + A +L KD G + YV + R++ TK + LNP ++E +F V
Sbjct: 21 QLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPL 80
Query: 65 AESMPTEILEINLYNDKKTGKRSTFLGKV 93
AE + L ++Y D R +G+V
Sbjct: 81 AE-LAQRKLHFSVY-DFDRFSRHDLIGQV 107
>pdb|2XYK|A Chain A, Group Ii 2-On-2 Hemoglobin From The Plant Pathogen
Agrobacterium Tumefaciens
pdb|2XYK|B Chain B, Group Ii 2-On-2 Hemoglobin From The Plant Pathogen
Agrobacterium Tumefaciens
Length = 133
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 729 IQAYATPMLPRMHYVRPLGPAQQD 752
++ + PML R H+V P+GPA++D
Sbjct: 68 VEKHGHPMLRRRHFVAPIGPAERD 91
>pdb|1BCI|A Chain A, C2 Domain Of Cytosolic Phospholipase A2, Nmr, Minimized
Average Structure
Length = 138
Score = 31.2 bits (69), Expect = 2.8, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 40 RRRTKTKFRDLNPQWDERLEFLVHDAESMPTEI--LEINLYNDKKTGKRSTFLGKVKIA 96
R+RT+ D+NP W+E EF++ + EI ++ N D+ G + + +K+
Sbjct: 57 RKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVG 115
>pdb|3N5A|A Chain A, Synaptotagmin-7, C2b-Domain, Calcium Bound
Length = 138
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 15/97 (15%)
Query: 9 LIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKF-----RDLNPQWDERLEFLVH 63
+IV + A+NL D GT+ YV V + +R + K R+LNP ++E F
Sbjct: 18 IIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAF--- 74
Query: 64 DAESMPTEILE----INLYNDKKTGKRSTFLGKVKIA 96
+PTE L I DK R+ +GK+ ++
Sbjct: 75 ---DIPTEKLRETTIIITVMDKDKLSRNDVIGKIYLS 108
>pdb|4IFB|A Chain A, Crystal Structure Of Sult 2a1 Llgg Mutant With Paps
pdb|4IFB|B Chain B, Crystal Structure Of Sult 2a1 Llgg Mutant With Paps
Length = 285
Score = 31.2 bits (69), Expect = 3.4, Method: Composition-based stats.
Identities = 11/43 (25%), Positives = 20/43 (46%)
Query: 783 DTDTHVWSMRRSKANWFRVVGCLTRAATLARWLDGIRTWAHTP 825
D D + + +S NW + CL + A+W+ + W +P
Sbjct: 34 DEDVIILTYPKSGTNWLAEILCLMHSKGDAKWIQSVPIWERSP 76
>pdb|3F3Y|A Chain A, Crystal Structure Of Human Cytosolic Sulfotransferase
Sult2a1 In Complex With Pap And Lithocholic Acid
pdb|3F3Y|B Chain B, Crystal Structure Of Human Cytosolic Sulfotransferase
Sult2a1 In Complex With Pap And Lithocholic Acid
pdb|3F3Y|C Chain C, Crystal Structure Of Human Cytosolic Sulfotransferase
Sult2a1 In Complex With Pap And Lithocholic Acid
pdb|3F3Y|D Chain D, Crystal Structure Of Human Cytosolic Sulfotransferase
Sult2a1 In Complex With Pap And Lithocholic Acid
Length = 285
Score = 31.2 bits (69), Expect = 3.4, Method: Composition-based stats.
Identities = 11/43 (25%), Positives = 20/43 (46%)
Query: 783 DTDTHVWSMRRSKANWFRVVGCLTRAATLARWLDGIRTWAHTP 825
D D + + +S NW + CL + A+W+ + W +P
Sbjct: 34 DEDVIILTYPKSGTNWLAEILCLMHSKGDAKWIQSVPIWERSP 76
>pdb|2QP4|A Chain A, Identification And Characterization Of Two Amino Acids
Critical For The Substrate Inhibition Of Sult2a1
Length = 284
Score = 30.8 bits (68), Expect = 3.5, Method: Composition-based stats.
Identities = 11/43 (25%), Positives = 20/43 (46%)
Query: 783 DTDTHVWSMRRSKANWFRVVGCLTRAATLARWLDGIRTWAHTP 825
D D + + +S NW + CL + A+W+ + W +P
Sbjct: 33 DEDVIILTYPKSGTNWLAEILCLMHSKGDAKWIQSVPIWERSP 75
>pdb|1RLW|A Chain A, Calcium-Phospholipid Binding Domain From Cytosolic
Phospholipase A2
Length = 126
Score = 30.8 bits (68), Expect = 3.5, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 40 RRRTKTKFRDLNPQWDERLEFLVHDAESMPTEI--LEINLYNDKKTGKRSTFLGKVKIA 96
R+RT+ D+NP W+E EF++ + EI ++ N D+ G + + +K+
Sbjct: 42 RKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVG 100
>pdb|2QP3|A Chain A, Identification And Characterization Of Two Amino Acids
Critical For The Substrate Inhibition Of Sult2a1
Length = 284
Score = 30.8 bits (68), Expect = 3.6, Method: Composition-based stats.
Identities = 11/43 (25%), Positives = 20/43 (46%)
Query: 783 DTDTHVWSMRRSKANWFRVVGCLTRAATLARWLDGIRTWAHTP 825
D D + + +S NW + CL + A+W+ + W +P
Sbjct: 33 DEDVIILTYPKSGTNWLAEILCLMHSKGDAKWIQSVPIWERSP 75
>pdb|3K40|A Chain A, Crystal Structure Of Drosophila 3,4-Dihydroxyphenylalanine
Decarboxylase
pdb|3K40|B Chain B, Crystal Structure Of Drosophila 3,4-Dihydroxyphenylalanine
Decarboxylase
Length = 475
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 25 QGTASAYVIVDFDGQRRRTKTKFRDLNPQWDER 57
QGTAS +V G + + + ++L+P+WDE
Sbjct: 145 QGTASESTLVALLGAKAKKLKEVKELHPEWDEH 177
>pdb|1CJY|A Chain A, Human Cytosolic Phospholipase A2
pdb|1CJY|B Chain B, Human Cytosolic Phospholipase A2
Length = 749
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 40 RRRTKTKFRDLNPQWDERLEFLVHDAESMPTEI--LEINLYNDKKTGKRSTFLGKVKIA 96
R+RT+ D+NP W+E EF++ + EI ++ N D+ G + + +K+
Sbjct: 57 RKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVG 115
>pdb|3NSJ|A Chain A, The X-Ray Crystal Structure Of Lymphocyte Perforin
Length = 540
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 30 AYVIVDFDGQRRRTKTKFRDLNPQWDERLEF 60
AY+ V F GQ RT + + NP+W ++++F
Sbjct: 416 AYLKVFFGGQEFRTGVVWNNNNPRWTDKMDF 446
>pdb|1OV4|A Chain A, Crystal Structure Of Human Dhea-st Complexed With
Androsterone
Length = 293
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 11/43 (25%), Positives = 20/43 (46%)
Query: 783 DTDTHVWSMRRSKANWFRVVGCLTRAATLARWLDGIRTWAHTP 825
D D + + +S NW + CL + A+W+ + W +P
Sbjct: 42 DEDVIILTYPKSGTNWLAEILCLMHSKGDAKWIQSVPIWERSP 84
>pdb|1J99|A Chain A, Crystal Structure Of Human Dehydroepiandrosterone
Sulfotransferase In Complex With Substrate
Length = 293
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 11/43 (25%), Positives = 20/43 (46%)
Query: 783 DTDTHVWSMRRSKANWFRVVGCLTRAATLARWLDGIRTWAHTP 825
D D + + +S NW + CL + A+W+ + W +P
Sbjct: 42 DEDVIILTYPKSGTNWLAEILCLMHSKGDAKWIQSVPIWERSP 84
>pdb|1EFH|A Chain A, Crystal Structure Of The Human Hydroxysteroid
Sulfotransferase In The Presence Of Pap
pdb|1EFH|B Chain B, Crystal Structure Of The Human Hydroxysteroid
Sulfotransferase In The Presence Of Pap
Length = 292
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 11/43 (25%), Positives = 20/43 (46%)
Query: 783 DTDTHVWSMRRSKANWFRVVGCLTRAATLARWLDGIRTWAHTP 825
D D + + +S NW + CL + A+W+ + W +P
Sbjct: 34 DEDVIILTYPKSGTNWLAEILCLMHSKGDAKWIQSVPIWERSP 76
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,595,838
Number of Sequences: 62578
Number of extensions: 1076150
Number of successful extensions: 2576
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 2512
Number of HSP's gapped (non-prelim): 78
length of query: 983
length of database: 14,973,337
effective HSP length: 108
effective length of query: 875
effective length of database: 8,214,913
effective search space: 7188048875
effective search space used: 7188048875
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)