Query 002002
Match_columns 983
No_of_seqs 528 out of 3968
Neff 8.7
Searched_HMMs 46136
Date Thu Mar 28 14:18:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002002.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002002hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08372 PRT_C: Plant phosphor 100.0 2.9E-50 6.4E-55 380.7 13.0 151 833-983 6-156 (156)
2 COG5038 Ca2+-dependent lipid-b 100.0 3.3E-33 7.2E-38 326.9 44.3 537 5-721 434-1161(1227)
3 COG5038 Ca2+-dependent lipid-b 99.9 6.5E-24 1.4E-28 249.5 34.8 391 270-723 433-842 (1227)
4 KOG1028 Ca2+-dependent phospho 99.9 8.3E-23 1.8E-27 231.5 22.0 211 6-359 166-393 (421)
5 KOG1028 Ca2+-dependent phospho 99.9 3.9E-21 8.5E-26 217.9 22.5 209 427-687 167-393 (421)
6 cd04019 C2C_MCTP_PRT_plant C2 99.9 1.1E-21 2.4E-26 191.5 15.3 140 428-577 1-150 (150)
7 cd08379 C2D_MCTP_PRT_plant C2 99.9 1.3E-21 2.9E-26 183.9 15.1 125 589-716 1-125 (126)
8 KOG2059 Ras GTPase-activating 99.9 4.4E-21 9.5E-26 214.2 16.4 244 428-723 6-278 (800)
9 cd04016 C2_Tollip C2 domain pr 99.8 1.3E-20 2.9E-25 176.1 14.5 119 587-720 1-121 (121)
10 cd04022 C2A_MCTP_PRT_plant C2 99.8 1.8E-20 4E-25 179.2 14.0 127 8-134 1-127 (127)
11 KOG2059 Ras GTPase-activating 99.8 2.5E-20 5.4E-25 208.2 16.3 238 6-392 4-274 (800)
12 cd04016 C2_Tollip C2 domain pr 99.8 7.4E-20 1.6E-24 171.0 14.5 118 7-132 2-121 (121)
13 KOG1030 Predicted Ca2+-depende 99.8 2.3E-20 5E-25 176.7 10.7 117 585-717 3-119 (168)
14 KOG1326 Membrane-associated pr 99.8 4.8E-19 1E-23 204.7 18.6 578 3-720 202-1021(1105)
15 cd08682 C2_Rab11-FIP_classI C2 99.8 3.9E-19 8.4E-24 169.7 13.6 117 590-718 1-125 (126)
16 cd08682 C2_Rab11-FIP_classI C2 99.8 4.5E-19 9.8E-24 169.3 13.6 121 9-130 1-125 (126)
17 cd08379 C2D_MCTP_PRT_plant C2 99.8 8.3E-19 1.8E-23 165.1 14.5 116 8-128 1-125 (126)
18 cd04015 C2_plant_PLD C2 domain 99.8 1.3E-18 2.7E-23 171.9 15.7 125 587-721 6-158 (158)
19 cd04042 C2A_MCTP_PRT C2 domain 99.8 1.7E-18 3.8E-23 164.0 15.2 118 590-721 2-120 (121)
20 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 2.8E-18 6.1E-23 161.9 14.9 119 590-720 2-121 (121)
21 cd04042 C2A_MCTP_PRT C2 domain 99.8 5.7E-18 1.2E-22 160.5 15.0 119 8-133 1-120 (121)
22 cd08378 C2B_MCTP_PRT_plant C2 99.8 4.7E-18 1E-22 160.4 13.9 116 274-395 1-121 (121)
23 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 4.9E-18 1.1E-22 160.3 13.9 117 9-131 2-120 (121)
24 cd08394 C2A_Munc13 C2 domain f 99.8 5.2E-18 1.1E-22 157.0 12.8 100 272-380 1-102 (127)
25 cd04019 C2C_MCTP_PRT_plant C2 99.8 9.7E-18 2.1E-22 163.8 14.5 123 8-134 1-133 (150)
26 cd08678 C2_C21orf25-like C2 do 99.8 1.3E-17 2.8E-22 159.2 15.0 120 590-723 1-122 (126)
27 cd08400 C2_Ras_p21A1 C2 domain 99.8 2E-17 4.3E-22 157.5 15.5 119 587-721 3-123 (126)
28 cd08395 C2C_Munc13 C2 domain t 99.7 7.4E-18 1.6E-22 157.2 12.1 107 8-117 1-114 (120)
29 cd08376 C2B_MCTP_PRT C2 domain 99.7 2.1E-17 4.6E-22 155.5 15.1 115 8-133 1-115 (116)
30 cd08377 C2C_MCTP_PRT C2 domain 99.7 2E-17 4.4E-22 156.4 15.0 118 588-720 1-118 (119)
31 KOG1030 Predicted Ca2+-depende 99.7 5.1E-18 1.1E-22 160.9 10.4 92 5-101 4-95 (168)
32 cd04022 C2A_MCTP_PRT_plant C2 99.7 1.6E-17 3.5E-22 158.8 14.1 121 589-721 1-126 (127)
33 cd08375 C2_Intersectin C2 doma 99.7 2.5E-17 5.3E-22 158.6 15.2 119 584-720 11-135 (136)
34 cd04033 C2_NEDD4_NEDD4L C2 dom 99.7 1.7E-17 3.8E-22 160.1 13.8 121 8-133 1-133 (133)
35 cd08378 C2B_MCTP_PRT_plant C2 99.7 1.6E-17 3.5E-22 156.7 12.8 114 9-132 2-119 (121)
36 cd08678 C2_C21orf25-like C2 do 99.7 2.6E-17 5.6E-22 157.1 14.3 119 9-135 1-122 (126)
37 cd08376 C2B_MCTP_PRT C2 domain 99.7 3.2E-17 6.9E-22 154.3 14.7 114 589-721 1-115 (116)
38 cd08681 C2_fungal_Inn1p-like C 99.7 1.9E-17 4.1E-22 156.3 13.1 117 7-132 1-118 (118)
39 cd04054 C2A_Rasal1_RasA4 C2 do 99.7 2.9E-17 6.3E-22 155.4 14.1 118 9-131 2-120 (121)
40 cd04046 C2_Calpain C2 domain p 99.7 5.5E-17 1.2E-21 154.7 15.4 121 6-135 2-124 (126)
41 cd08681 C2_fungal_Inn1p-like C 99.7 1.8E-17 3.8E-22 156.5 11.6 116 588-720 1-118 (118)
42 cd04027 C2B_Munc13 C2 domain s 99.7 4.3E-17 9.3E-22 155.6 14.3 116 8-130 2-127 (127)
43 cd08400 C2_Ras_p21A1 C2 domain 99.7 6.4E-17 1.4E-21 154.0 15.4 121 6-135 3-125 (126)
44 cd04024 C2A_Synaptotagmin-like 99.7 5E-17 1.1E-21 155.9 14.0 122 7-132 1-128 (128)
45 cd04010 C2B_RasA3 C2 domain se 99.7 3E-17 6.4E-22 159.3 11.7 110 8-120 1-127 (148)
46 cd08377 C2C_MCTP_PRT C2 domain 99.7 9.8E-17 2.1E-21 151.7 15.0 118 7-132 1-118 (119)
47 cd08375 C2_Intersectin C2 doma 99.7 1.2E-16 2.5E-21 153.9 15.4 120 4-132 12-135 (136)
48 cd04033 C2_NEDD4_NEDD4L C2 dom 99.7 7.5E-17 1.6E-21 155.7 14.0 119 589-720 1-132 (133)
49 cd08381 C2B_PI3K_class_II C2 d 99.7 3.4E-17 7.3E-22 154.8 11.2 105 6-113 12-121 (122)
50 cd04046 C2_Calpain C2 domain p 99.7 1.8E-16 3.8E-21 151.2 15.9 119 587-721 2-122 (126)
51 cd04024 C2A_Synaptotagmin-like 99.7 8.8E-17 1.9E-21 154.2 13.8 123 588-720 1-128 (128)
52 cd04025 C2B_RasA1_RasA4 C2 dom 99.7 1E-16 2.2E-21 152.4 13.9 118 8-130 1-122 (123)
53 cd04054 C2A_Rasal1_RasA4 C2 do 99.7 1.3E-16 2.8E-21 150.9 14.3 117 590-719 2-120 (121)
54 cd04025 C2B_RasA1_RasA4 C2 dom 99.7 1.2E-16 2.6E-21 152.0 13.6 119 589-719 1-123 (123)
55 cd08382 C2_Smurf-like C2 domai 99.7 1.6E-16 3.5E-21 150.7 13.8 118 8-130 1-122 (123)
56 cd08677 C2A_Synaptotagmin-13 C 99.7 6.8E-17 1.5E-21 148.3 10.2 103 5-113 12-118 (118)
57 cd04050 C2B_Synaptotagmin-like 99.7 1.3E-16 2.9E-21 146.9 12.1 103 8-117 1-104 (105)
58 cd04036 C2_cPLA2 C2 domain pre 99.7 2.2E-16 4.7E-21 149.2 13.7 113 9-132 2-117 (119)
59 cd04015 C2_plant_PLD C2 domain 99.7 2.8E-16 6.1E-21 155.2 14.7 120 7-133 7-158 (158)
60 cd04029 C2A_SLP-4_5 C2 domain 99.7 3.3E-16 7.2E-21 148.7 14.0 105 586-701 13-125 (125)
61 cd08391 C2A_C2C_Synaptotagmin_ 99.7 2.7E-16 5.9E-21 149.2 13.3 118 588-720 1-121 (121)
62 cd04044 C2A_Tricalbin-like C2 99.7 3.4E-16 7.5E-21 149.2 13.6 120 587-721 1-123 (124)
63 cd08391 C2A_C2C_Synaptotagmin_ 99.7 3.9E-16 8.6E-21 148.1 13.6 115 7-132 1-121 (121)
64 cd04017 C2D_Ferlin C2 domain f 99.7 6.1E-16 1.3E-20 149.4 14.8 124 7-134 1-133 (135)
65 cd08691 C2_NEDL1-like C2 domai 99.7 6.6E-16 1.4E-20 147.9 14.5 117 8-130 2-136 (137)
66 cd04039 C2_PSD C2 domain prese 99.7 3.3E-16 7.2E-21 144.3 11.7 97 588-692 1-99 (108)
67 cd04028 C2B_RIM1alpha C2 domai 99.7 3.4E-16 7.5E-21 150.8 12.0 105 588-703 29-139 (146)
68 cd04027 C2B_Munc13 C2 domain s 99.7 7.7E-16 1.7E-20 147.0 14.2 123 589-718 2-127 (127)
69 cd08393 C2A_SLP-1_2 C2 domain 99.7 2.5E-16 5.5E-21 149.7 10.7 107 5-114 13-125 (125)
70 cd08381 C2B_PI3K_class_II C2 d 99.7 3.2E-16 6.9E-21 148.1 10.9 100 588-700 13-121 (122)
71 cd04036 C2_cPLA2 C2 domain pre 99.7 7.2E-16 1.6E-20 145.6 13.3 112 590-720 2-117 (119)
72 cd04028 C2B_RIM1alpha C2 domai 99.7 6E-16 1.3E-20 149.2 12.7 106 6-117 28-140 (146)
73 cd08393 C2A_SLP-1_2 C2 domain 99.7 6.7E-16 1.4E-20 146.8 12.9 105 586-701 13-125 (125)
74 cd08392 C2A_SLP-3 C2 domain fi 99.7 4.1E-16 8.8E-21 148.3 11.4 108 5-114 13-128 (128)
75 cd04014 C2_PKC_epsilon C2 doma 99.7 1.3E-15 2.9E-20 146.6 15.0 116 6-134 3-130 (132)
76 cd08677 C2A_Synaptotagmin-13 C 99.7 4.3E-16 9.3E-21 143.0 10.9 100 585-699 11-117 (118)
77 cd08395 C2C_Munc13 C2 domain t 99.7 7.6E-16 1.7E-20 143.7 12.4 102 589-703 1-113 (120)
78 cd04010 C2B_RasA3 C2 domain se 99.7 6.4E-16 1.4E-20 150.1 11.7 115 590-718 2-147 (148)
79 cd04029 C2A_SLP-4_5 C2 domain 99.7 6.4E-16 1.4E-20 146.8 11.4 107 5-114 13-125 (125)
80 cd08387 C2A_Synaptotagmin-8 C2 99.7 1.2E-15 2.6E-20 145.2 13.4 104 586-701 14-123 (124)
81 cd08680 C2_Kibra C2 domain fou 99.7 5.3E-16 1.2E-20 146.1 10.6 107 5-113 12-124 (124)
82 cd08688 C2_KIAA0528-like C2 do 99.6 6.4E-16 1.4E-20 143.6 10.7 102 590-702 1-109 (110)
83 cd08685 C2_RGS-like C2 domain 99.6 6.4E-16 1.4E-20 145.2 10.7 105 5-113 10-119 (119)
84 cd08688 C2_KIAA0528-like C2 do 99.6 7.5E-16 1.6E-20 143.1 11.0 105 9-115 1-109 (110)
85 KOG1327 Copine [Signal transdu 99.6 1.6E-15 3.4E-20 169.4 15.3 253 463-788 41-336 (529)
86 cd04044 C2A_Tricalbin-like C2 99.6 1.6E-15 3.4E-20 144.6 13.0 120 7-134 2-124 (124)
87 cd08394 C2A_Munc13 C2 domain f 99.6 1.4E-15 3E-20 141.0 12.0 99 588-703 2-102 (127)
88 cd04043 C2_Munc13_fungal C2 do 99.6 3.1E-15 6.6E-20 143.0 14.9 118 7-135 1-123 (126)
89 cd04014 C2_PKC_epsilon C2 doma 99.6 3.2E-15 6.8E-20 144.0 15.1 119 587-722 3-130 (132)
90 cd08388 C2A_Synaptotagmin-4-11 99.6 1.4E-15 3E-20 145.1 12.2 110 5-115 14-128 (128)
91 cd08373 C2A_Ferlin C2 domain f 99.6 3.6E-15 7.8E-20 142.6 14.9 117 13-135 2-118 (127)
92 cd08373 C2A_Ferlin C2 domain f 99.6 3.9E-15 8.5E-20 142.3 14.8 114 594-723 2-118 (127)
93 cd08382 C2_Smurf-like C2 domai 99.6 2.5E-15 5.5E-20 142.5 13.3 118 590-718 2-122 (123)
94 cd04013 C2_SynGAP_like C2 doma 99.6 4.9E-15 1.1E-19 142.3 15.3 123 587-722 10-140 (146)
95 cd04031 C2A_RIM1alpha C2 domai 99.6 1.4E-15 3.1E-20 145.1 11.4 107 5-114 14-125 (125)
96 cd08385 C2A_Synaptotagmin-1-5- 99.6 3.2E-15 6.9E-20 142.4 13.8 104 586-701 14-123 (124)
97 cd04011 C2B_Ferlin C2 domain s 99.6 1.4E-15 3E-20 141.7 10.8 106 5-115 2-110 (111)
98 cd08387 C2A_Synaptotagmin-8 C2 99.6 1.8E-15 4E-20 144.0 11.7 107 5-114 14-123 (124)
99 cd04039 C2_PSD C2 domain prese 99.6 2.3E-15 4.9E-20 138.7 11.8 92 7-101 1-96 (108)
100 cd08389 C2A_Synaptotagmin-14_1 99.6 1.7E-15 3.6E-20 143.8 11.0 108 5-115 14-124 (124)
101 cd08385 C2A_Synaptotagmin-1-5- 99.6 2.1E-15 4.5E-20 143.7 11.6 107 5-114 14-123 (124)
102 cd04041 C2A_fungal C2 domain f 99.6 1.3E-15 2.9E-20 141.7 9.9 99 588-701 1-107 (111)
103 cd08392 C2A_SLP-3 C2 domain fi 99.6 4.3E-15 9.4E-20 141.3 13.4 104 586-700 13-127 (128)
104 cd08386 C2A_Synaptotagmin-7 C2 99.6 2.4E-15 5.1E-20 143.6 11.6 108 5-114 14-124 (125)
105 cd08685 C2_RGS-like C2 domain 99.6 2.4E-15 5.2E-20 141.3 11.2 101 588-700 12-119 (119)
106 cd04011 C2B_Ferlin C2 domain s 99.6 3.3E-15 7.1E-20 139.2 11.9 102 272-380 3-111 (111)
107 cd04050 C2B_Synaptotagmin-like 99.6 4.2E-15 9.2E-20 136.9 12.2 102 429-543 2-103 (105)
108 cd04041 C2A_fungal C2 domain f 99.6 2.2E-15 4.7E-20 140.3 10.3 104 7-115 1-108 (111)
109 cd04013 C2_SynGAP_like C2 doma 99.6 6.7E-15 1.5E-19 141.3 13.8 118 7-134 11-140 (146)
110 cd04031 C2A_RIM1alpha C2 domai 99.6 6.6E-15 1.4E-19 140.5 13.3 102 586-701 14-125 (125)
111 cd04030 C2C_KIAA1228 C2 domain 99.6 8.1E-15 1.8E-19 140.3 13.9 104 586-701 14-127 (127)
112 cd08386 C2A_Synaptotagmin-7 C2 99.6 7.5E-15 1.6E-19 140.1 13.5 104 586-701 14-124 (125)
113 cd04018 C2C_Ferlin C2 domain t 99.6 4E-15 8.7E-20 144.7 11.7 107 8-117 1-127 (151)
114 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.6 4.1E-15 8.9E-20 147.5 12.0 110 5-116 25-139 (162)
115 cd04038 C2_ArfGAP C2 domain pr 99.6 5.2E-15 1.1E-19 143.3 12.1 92 587-691 1-92 (145)
116 cd04017 C2D_Ferlin C2 domain f 99.6 1.2E-14 2.7E-19 140.3 14.4 117 589-721 2-132 (135)
117 cd04030 C2C_KIAA1228 C2 domain 99.6 6.1E-15 1.3E-19 141.2 12.0 107 6-114 15-127 (127)
118 cd08388 C2A_Synaptotagmin-4-11 99.6 2.1E-14 4.6E-19 136.9 15.5 104 587-701 15-127 (128)
119 cd08690 C2_Freud-1 C2 domain f 99.6 2E-14 4.3E-19 139.6 14.9 122 9-133 4-137 (155)
120 cd04032 C2_Perforin C2 domain 99.6 8.1E-15 1.7E-19 138.3 11.7 95 584-691 24-120 (127)
121 cd08690 C2_Freud-1 C2 domain f 99.6 2.1E-14 4.5E-19 139.4 14.7 117 590-721 4-137 (155)
122 cd08521 C2A_SLP C2 domain firs 99.6 1.5E-14 3.3E-19 137.6 13.5 104 586-700 12-123 (123)
123 cd04049 C2_putative_Elicitor-r 99.6 1.5E-14 3.2E-19 137.8 13.0 109 7-117 1-110 (124)
124 cd04051 C2_SRC2_like C2 domain 99.6 7.7E-15 1.7E-19 140.0 10.9 113 589-716 1-125 (125)
125 cd04051 C2_SRC2_like C2 domain 99.6 8.2E-15 1.8E-19 139.8 11.1 118 8-128 1-125 (125)
126 cd04043 C2_Munc13_fungal C2 do 99.6 2.4E-14 5.2E-19 136.8 14.3 113 589-721 2-121 (126)
127 cd08383 C2A_RasGAP C2 domain ( 99.6 1.6E-14 3.5E-19 136.1 12.9 115 9-132 2-117 (117)
128 cd08521 C2A_SLP C2 domain firs 99.6 1.1E-14 2.3E-19 138.6 11.6 106 5-113 12-123 (123)
129 PLN03008 Phospholipase D delta 99.6 1.3E-14 2.9E-19 169.9 14.4 105 610-723 74-179 (868)
130 cd08390 C2A_Synaptotagmin-15-1 99.6 1.4E-14 3.1E-19 137.8 12.2 109 4-115 11-123 (123)
131 cd04018 C2C_Ferlin C2 domain t 99.6 1.4E-14 3.1E-19 140.8 12.2 94 590-692 2-108 (151)
132 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.6 1.6E-14 3.5E-19 143.2 12.8 105 585-701 24-137 (162)
133 cd04049 C2_putative_Elicitor-r 99.6 1.3E-14 2.8E-19 138.1 11.7 103 588-702 1-108 (124)
134 cd08680 C2_Kibra C2 domain fou 99.6 1.3E-14 2.7E-19 136.8 10.9 104 585-700 11-124 (124)
135 cd04038 C2_ArfGAP C2 domain pr 99.6 5.1E-14 1.1E-18 136.4 15.2 89 7-101 2-90 (145)
136 cd04040 C2D_Tricalbin-like C2 99.6 2.8E-14 6.1E-19 134.0 12.7 113 9-128 1-114 (115)
137 cd08675 C2B_RasGAP C2 domain s 99.6 1.4E-14 3.1E-19 139.7 10.8 106 9-117 1-122 (137)
138 cd04021 C2_E3_ubiquitin_ligase 99.6 4.6E-14 9.9E-19 134.2 14.0 117 7-130 2-124 (125)
139 cd04045 C2C_Tricalbin-like C2 99.6 2.2E-14 4.8E-19 135.1 11.6 103 588-703 1-104 (120)
140 cd08390 C2A_Synaptotagmin-15-1 99.6 4.7E-14 1E-18 134.2 13.9 105 586-701 12-122 (123)
141 cd08676 C2A_Munc13-like C2 dom 99.6 1.9E-14 4.2E-19 140.1 11.1 101 3-113 24-153 (153)
142 cd04032 C2_Perforin C2 domain 99.5 2.6E-14 5.7E-19 134.8 11.3 94 4-101 25-118 (127)
143 cd04040 C2D_Tricalbin-like C2 99.5 4.3E-14 9.4E-19 132.7 12.8 112 590-716 1-114 (115)
144 cd08383 C2A_RasGAP C2 domain ( 99.5 4.9E-14 1.1E-18 132.8 13.0 112 590-720 2-117 (117)
145 cd08389 C2A_Synaptotagmin-14_1 99.5 6.1E-14 1.3E-18 133.1 13.6 103 586-701 14-123 (124)
146 cd08406 C2B_Synaptotagmin-12 C 99.5 7.8E-15 1.7E-19 140.7 7.2 107 5-116 13-124 (136)
147 KOG0696 Serine/threonine prote 99.5 3.1E-15 6.7E-20 158.6 3.5 107 5-116 178-289 (683)
148 cd04045 C2C_Tricalbin-like C2 99.5 7.1E-14 1.5E-18 131.7 12.5 104 7-117 1-105 (120)
149 KOG1011 Neurotransmitter relea 99.5 1E-14 2.3E-19 160.3 7.6 122 7-135 295-426 (1283)
150 cd04009 C2B_Munc13-like C2 dom 99.5 8.2E-14 1.8E-18 134.2 12.5 92 587-690 15-118 (133)
151 cd04052 C2B_Tricalbin-like C2 99.5 7.4E-14 1.6E-18 129.9 11.7 99 609-722 9-110 (111)
152 cd08407 C2B_Synaptotagmin-13 C 99.5 4E-14 8.7E-19 135.6 10.1 105 5-114 13-124 (138)
153 cd08675 C2B_RasGAP C2 domain s 99.5 4.8E-14 1E-18 136.0 10.7 103 590-705 1-123 (137)
154 cd04021 C2_E3_ubiquitin_ligase 99.5 1.9E-13 4.1E-18 130.0 14.3 116 589-718 3-124 (125)
155 cd08407 C2B_Synaptotagmin-13 C 99.5 5.6E-14 1.2E-18 134.6 10.3 105 585-701 12-124 (138)
156 cd08691 C2_NEDL1-like C2 domai 99.5 2.8E-13 6E-18 129.8 14.8 118 589-718 2-136 (137)
157 KOG1326 Membrane-associated pr 99.5 2.6E-14 5.5E-19 166.1 8.8 382 273-687 206-703 (1105)
158 cd04052 C2B_Tricalbin-like C2 99.5 8.4E-14 1.8E-18 129.5 10.4 101 24-134 9-110 (111)
159 PLN03200 cellulose synthase-in 99.5 5.8E-14 1.3E-18 179.7 11.9 121 582-721 1974-2100(2102)
160 cd08384 C2B_Rabphilin_Doc2 C2 99.5 3.2E-14 6.9E-19 137.3 7.4 107 5-116 11-122 (133)
161 cd08676 C2A_Munc13-like C2 dom 99.5 1.8E-13 4E-18 133.2 12.4 102 422-540 23-153 (153)
162 cd08404 C2B_Synaptotagmin-4 C2 99.5 4E-14 8.8E-19 137.0 7.8 108 5-117 13-125 (136)
163 cd04026 C2_PKC_alpha_gamma C2 99.5 1.8E-13 4E-18 131.6 12.3 103 588-703 13-122 (131)
164 cd08404 C2B_Synaptotagmin-4 C2 99.5 7.1E-14 1.5E-18 135.3 9.3 103 586-702 13-123 (136)
165 cd08406 C2B_Synaptotagmin-12 C 99.5 1.1E-13 2.4E-18 132.7 10.1 102 586-701 13-122 (136)
166 cd08402 C2B_Synaptotagmin-1 C2 99.5 1.8E-13 3.9E-18 132.5 11.2 108 5-117 13-125 (136)
167 cd08402 C2B_Synaptotagmin-1 C2 99.5 5.9E-14 1.3E-18 135.9 7.6 104 585-702 12-123 (136)
168 PLN03008 Phospholipase D delta 99.5 2.3E-13 4.9E-18 159.7 13.8 104 26-136 75-180 (868)
169 cd08384 C2B_Rabphilin_Doc2 C2 99.5 5.4E-14 1.2E-18 135.7 7.3 104 585-702 10-121 (133)
170 cd08686 C2_ABR C2 domain in th 99.5 4.7E-13 1E-17 122.5 12.9 80 590-687 1-92 (118)
171 cd00275 C2_PLC_like C2 domain 99.5 5.8E-13 1.3E-17 127.7 14.0 117 7-132 2-127 (128)
172 cd04009 C2B_Munc13-like C2 dom 99.5 2.1E-13 4.4E-18 131.4 10.9 96 5-101 14-117 (133)
173 cd04026 C2_PKC_alpha_gamma C2 99.5 2.2E-13 4.8E-18 131.0 11.1 106 7-117 13-123 (131)
174 cd04037 C2E_Ferlin C2 domain f 99.5 2.7E-13 5.8E-18 128.7 11.2 90 8-101 1-92 (124)
175 KOG0696 Serine/threonine prote 99.5 4.3E-14 9.4E-19 150.0 5.9 102 589-703 181-289 (683)
176 cd08405 C2B_Synaptotagmin-7 C2 99.5 4.8E-13 1.1E-17 129.5 12.8 103 586-702 13-123 (136)
177 cd08408 C2B_Synaptotagmin-14_1 99.5 2.8E-13 6.1E-18 130.6 11.0 108 5-116 13-126 (138)
178 cd04037 C2E_Ferlin C2 domain f 99.5 3.8E-13 8.2E-18 127.7 11.5 90 589-690 1-93 (124)
179 cd08405 C2B_Synaptotagmin-7 C2 99.5 9.2E-14 2E-18 134.5 7.2 107 5-116 13-124 (136)
180 cd04048 C2A_Copine C2 domain f 99.5 3.9E-13 8.5E-18 127.1 11.1 95 595-701 7-113 (120)
181 cd08409 C2B_Synaptotagmin-15 C 99.4 1.4E-13 3E-18 133.0 7.4 108 5-116 13-125 (137)
182 cd08403 C2B_Synaptotagmin-3-5- 99.4 1.7E-13 3.7E-18 132.3 7.9 104 585-702 11-122 (134)
183 cd08410 C2B_Synaptotagmin-17 C 99.4 1.4E-13 3E-18 132.8 7.1 109 5-117 12-125 (135)
184 cd04048 C2A_Copine C2 domain f 99.4 5.4E-13 1.2E-17 126.2 10.8 98 12-114 5-113 (120)
185 cd08692 C2B_Tac2-N C2 domain s 99.4 6.4E-13 1.4E-17 125.2 11.2 104 5-113 12-121 (135)
186 cd04035 C2A_Rabphilin_Doc2 C2 99.4 7E-13 1.5E-17 126.0 11.3 95 5-101 13-112 (123)
187 cd08410 C2B_Synaptotagmin-17 C 99.4 9.6E-13 2.1E-17 126.9 12.2 105 585-702 11-123 (135)
188 cd00275 C2_PLC_like C2 domain 99.4 2.1E-12 4.6E-17 123.8 14.5 117 589-720 3-127 (128)
189 cd08403 C2B_Synaptotagmin-3-5- 99.4 2.5E-13 5.5E-18 131.1 7.9 107 5-116 12-123 (134)
190 cd00276 C2B_Synaptotagmin C2 d 99.4 3.6E-13 7.8E-18 130.2 8.3 108 5-117 12-124 (134)
191 cd00276 C2B_Synaptotagmin C2 d 99.4 4.4E-13 9.6E-18 129.6 8.6 104 586-703 12-123 (134)
192 cd04035 C2A_Rabphilin_Doc2 C2 99.4 3.1E-12 6.7E-17 121.6 13.8 96 587-695 14-118 (123)
193 cd08409 C2B_Synaptotagmin-15 C 99.4 8E-13 1.7E-17 127.7 8.6 104 586-702 13-124 (137)
194 cd08686 C2_ABR C2 domain in th 99.4 1.9E-12 4E-17 118.6 9.7 80 9-99 1-92 (118)
195 cd04047 C2B_Copine C2 domain s 99.4 1.7E-12 3.8E-17 120.7 9.7 92 594-700 6-108 (110)
196 cd08692 C2B_Tac2-N C2 domain s 99.4 1.9E-12 4.1E-17 122.1 8.9 103 585-700 11-121 (135)
197 cd08408 C2B_Synaptotagmin-14_1 99.4 4.8E-12 1E-16 122.1 11.9 104 585-701 12-124 (138)
198 PLN03200 cellulose synthase-in 99.3 6.6E-12 1.4E-16 161.2 11.6 118 6-133 1979-2100(2102)
199 cd04047 C2B_Copine C2 domain s 99.3 1.7E-11 3.6E-16 114.1 10.3 89 11-101 4-99 (110)
200 PF00168 C2: C2 domain; Inter 99.3 2.7E-11 5.8E-16 106.7 9.9 82 9-94 1-85 (85)
201 KOG1013 Synaptic vesicle prote 99.3 3.6E-12 7.8E-17 132.2 4.8 97 4-101 90-191 (362)
202 KOG1013 Synaptic vesicle prote 99.2 5.5E-12 1.2E-16 130.9 4.3 219 428-698 94-337 (362)
203 PLN02270 phospholipase D alpha 99.2 1.4E-10 3E-15 136.8 14.3 128 587-723 7-150 (808)
204 PF00168 C2: C2 domain; Inter 99.2 1E-10 2.2E-15 103.0 9.8 81 590-682 1-85 (85)
205 KOG1011 Neurotransmitter relea 99.2 3.6E-11 7.9E-16 132.8 7.4 127 587-720 294-423 (1283)
206 cd00030 C2 C2 domain. The C2 d 99.1 6E-10 1.3E-14 100.9 10.5 101 9-113 1-102 (102)
207 KOG1328 Synaptic vesicle prote 99.0 4.7E-11 1E-15 134.1 1.2 125 5-134 112-302 (1103)
208 cd08374 C2F_Ferlin C2 domain s 99.0 1.2E-09 2.6E-14 103.1 10.3 92 9-101 2-122 (133)
209 cd00030 C2 C2 domain. The C2 d 99.0 1.4E-09 3E-14 98.4 10.2 99 590-700 1-102 (102)
210 PLN02223 phosphoinositide phos 99.0 2.8E-09 6.1E-14 121.1 13.7 118 7-132 409-536 (537)
211 smart00239 C2 Protein kinase C 99.0 2.3E-09 4.9E-14 97.3 10.6 91 590-692 2-96 (101)
212 cd08374 C2F_Ferlin C2 domain s 99.0 2.7E-09 5.8E-14 100.8 10.3 93 590-692 2-125 (133)
213 smart00239 C2 Protein kinase C 99.0 2.9E-09 6.3E-14 96.5 10.3 90 8-101 1-93 (101)
214 PLN02223 phosphoinositide phos 99.0 6E-09 1.3E-13 118.5 14.6 106 587-704 408-521 (537)
215 PLN02952 phosphoinositide phos 98.9 1.3E-08 2.8E-13 118.5 14.3 120 587-721 469-597 (599)
216 PLN02270 phospholipase D alpha 98.9 9.7E-09 2.1E-13 121.5 13.2 123 7-136 8-151 (808)
217 PLN02952 phosphoinositide phos 98.9 1.6E-08 3.6E-13 117.7 13.7 119 6-132 469-598 (599)
218 KOG0169 Phosphoinositide-speci 98.8 1.8E-08 4E-13 116.5 11.2 118 8-133 617-744 (746)
219 KOG1031 Predicted Ca2+-depende 98.8 1.7E-08 3.7E-13 110.9 9.7 122 7-132 3-135 (1169)
220 PLN02230 phosphoinositide phos 98.8 3.1E-08 6.8E-13 115.1 12.1 119 6-132 468-597 (598)
221 PLN02230 phosphoinositide phos 98.8 5E-08 1.1E-12 113.4 12.7 121 587-720 468-597 (598)
222 PLN02222 phosphoinositide phos 98.8 8.9E-08 1.9E-12 111.3 14.6 121 587-720 451-580 (581)
223 KOG1031 Predicted Ca2+-depende 98.8 2.5E-08 5.4E-13 109.6 9.4 120 587-720 2-135 (1169)
224 KOG0169 Phosphoinositide-speci 98.7 4.3E-08 9.4E-13 113.5 11.7 121 589-721 617-744 (746)
225 PLN02222 phosphoinositide phos 98.7 7.8E-08 1.7E-12 111.7 13.4 119 6-132 451-580 (581)
226 PLN02228 Phosphoinositide phos 98.7 8.5E-08 1.8E-12 111.1 13.6 120 7-134 431-562 (567)
227 cd08689 C2_fungal_Pkc1p C2 dom 98.7 4.4E-08 9.6E-13 86.5 7.9 86 590-689 1-87 (109)
228 PLN02228 Phosphoinositide phos 98.7 1.7E-07 3.6E-12 108.7 14.0 122 587-721 430-561 (567)
229 cd08689 C2_fungal_Pkc1p C2 dom 98.6 9.7E-08 2.1E-12 84.4 8.2 83 9-101 1-87 (109)
230 KOG1264 Phospholipase C [Lipid 98.5 4.8E-07 1E-11 103.6 9.9 118 7-133 1065-1189(1267)
231 KOG1328 Synaptic vesicle prote 98.5 5.6E-08 1.2E-12 109.9 1.9 97 4-101 944-1048(1103)
232 PLN02352 phospholipase D epsil 98.4 1.8E-06 3.9E-11 102.5 13.1 121 586-723 8-132 (758)
233 KOG1264 Phospholipase C [Lipid 98.3 1.8E-06 3.8E-11 99.2 10.3 100 588-703 1065-1172(1267)
234 PF04842 DUF639: Plant protein 98.2 8.7E-06 1.9E-10 94.2 10.9 151 793-963 484-655 (683)
235 PLN02352 phospholipase D epsil 98.2 1.2E-05 2.7E-10 95.6 12.4 118 7-136 10-133 (758)
236 PF06398 Pex24p: Integral pero 98.1 1.4E-05 3E-10 90.8 12.0 161 789-962 3-194 (359)
237 cd08683 C2_C2cd3 C2 domain fou 98.0 1.5E-05 3.2E-10 72.7 7.1 111 590-700 1-143 (143)
238 KOG0905 Phosphoinositide 3-kin 97.9 1E-05 2.2E-10 96.7 4.5 109 6-116 1523-1636(1639)
239 PF11696 DUF3292: Protein of u 97.9 0.00017 3.7E-09 83.7 13.9 54 784-837 83-137 (642)
240 KOG1327 Copine [Signal transdu 97.6 0.00053 1.2E-08 78.1 13.2 178 304-525 43-236 (529)
241 KOG0905 Phosphoinositide 3-kin 97.4 0.00016 3.5E-09 86.9 4.8 100 272-380 1523-1636(1639)
242 cd08683 C2_C2cd3 C2 domain fou 97.4 9.8E-05 2.1E-09 67.5 2.2 105 9-113 1-143 (143)
243 PF12416 DUF3668: Cep120 prote 97.3 0.039 8.5E-07 60.9 21.7 239 275-525 2-295 (340)
244 PLN02964 phosphatidylserine de 97.3 0.00039 8.4E-09 82.6 6.5 88 585-691 51-140 (644)
245 PLN02964 phosphatidylserine de 97.0 0.0011 2.3E-08 79.0 7.0 88 3-101 50-138 (644)
246 cd08684 C2A_Tac2-N C2 domain f 97.0 0.00061 1.3E-08 57.8 3.0 97 10-112 2-102 (103)
247 KOG2060 Rab3 effector RIM1 and 97.0 0.0005 1.1E-08 73.9 3.1 109 5-117 267-381 (405)
248 KOG3837 Uncharacterized conser 96.7 0.00066 1.4E-08 73.4 1.8 124 7-133 367-503 (523)
249 cd08684 C2A_Tac2-N C2 domain f 96.7 0.0019 4.2E-08 54.8 3.8 95 430-539 2-102 (103)
250 PF15627 CEP76-C2: CEP76 C2 do 96.4 0.03 6.6E-07 54.2 10.5 131 4-135 6-152 (156)
251 KOG2060 Rab3 effector RIM1 and 96.4 0.0018 3.8E-08 69.8 2.3 108 585-703 266-380 (405)
252 KOG3837 Uncharacterized conser 96.4 0.0042 9.1E-08 67.4 5.0 118 589-721 368-503 (523)
253 PF12416 DUF3668: Cep120 prote 95.8 0.078 1.7E-06 58.6 11.6 119 590-722 2-133 (340)
254 KOG1265 Phospholipase C [Lipid 95.4 0.051 1.1E-06 64.6 8.9 112 7-134 703-824 (1189)
255 KOG1265 Phospholipase C [Lipid 95.3 0.083 1.8E-06 62.9 9.9 126 587-736 702-841 (1189)
256 KOG1452 Predicted Rho GTPase-a 94.7 0.074 1.6E-06 55.9 6.8 151 585-771 48-201 (442)
257 cd08398 C2_PI3K_class_I_alpha 94.6 0.46 9.9E-06 46.8 11.7 106 273-396 8-124 (158)
258 cd08398 C2_PI3K_class_I_alpha 94.4 0.22 4.9E-06 49.0 9.2 90 6-99 7-105 (158)
259 cd08693 C2_PI3K_class_I_beta_d 93.9 0.33 7.2E-06 48.7 9.4 74 6-81 7-86 (173)
260 cd08687 C2_PKN-like C2 domain 92.8 1.3 2.7E-05 38.6 9.5 84 27-132 8-92 (98)
261 KOG1452 Predicted Rho GTPase-a 92.7 0.2 4.4E-06 52.8 5.8 115 5-134 49-168 (442)
262 cd08380 C2_PI3K_like C2 domain 92.3 0.67 1.5E-05 45.7 8.8 94 6-100 7-107 (156)
263 PF10358 NT-C2: N-terminal C2 92.1 5.2 0.00011 38.6 14.7 113 589-721 8-135 (143)
264 PF10358 NT-C2: N-terminal C2 92.0 3.6 7.8E-05 39.8 13.5 122 5-134 5-136 (143)
265 KOG4269 Rac GTPase-activating 91.8 0.04 8.7E-07 65.5 -0.7 197 586-818 757-961 (1112)
266 cd08693 C2_PI3K_class_I_beta_d 91.6 0.97 2.1E-05 45.4 9.1 93 589-687 9-119 (173)
267 cd08397 C2_PI3K_class_III C2 d 91.5 0.73 1.6E-05 45.5 7.9 92 26-135 28-125 (159)
268 cd08687 C2_PKN-like C2 domain 91.2 1.7 3.6E-05 37.9 8.5 86 610-720 6-92 (98)
269 PF11696 DUF3292: Protein of u 90.9 0.58 1.3E-05 55.2 7.5 83 880-971 89-172 (642)
270 cd01459 vWA_copine_like VWA Co 90.9 0.29 6.2E-06 52.2 4.7 43 727-788 39-82 (254)
271 cd04012 C2A_PI3K_class_II C2 d 90.6 0.95 2.1E-05 45.4 7.9 94 6-99 7-118 (171)
272 PF15627 CEP76-C2: CEP76 C2 do 90.3 3.1 6.8E-05 40.5 10.7 125 588-721 9-150 (156)
273 cd08399 C2_PI3K_class_I_gamma 89.5 3.5 7.7E-05 41.4 10.8 75 6-81 9-88 (178)
274 cd08397 C2_PI3K_class_III C2 d 89.3 1.4 3.1E-05 43.4 7.8 70 610-687 27-106 (159)
275 cd08695 C2_Dock-B C2 domains f 87.8 8.1 0.00018 39.1 12.0 57 40-97 54-111 (189)
276 PTZ00447 apical membrane antig 87.2 3.4 7.3E-05 44.5 9.2 108 273-392 58-171 (508)
277 cd08380 C2_PI3K_like C2 domain 87.0 3.1 6.7E-05 41.0 8.6 88 589-687 9-106 (156)
278 smart00142 PI3K_C2 Phosphoinos 85.2 4.9 0.00011 36.3 8.3 75 7-81 11-91 (100)
279 PF00792 PI3K_C2: Phosphoinosi 83.2 10 0.00022 36.7 10.1 74 42-134 23-101 (142)
280 cd08399 C2_PI3K_class_I_gamma 82.8 10 0.00022 38.1 10.0 94 589-687 11-121 (178)
281 cd04012 C2A_PI3K_class_II C2 d 82.7 5.2 0.00011 40.1 8.1 89 429-523 10-119 (171)
282 PF08372 PRT_C: Plant phosphor 82.3 2.8 6E-05 40.9 5.6 45 793-837 63-107 (156)
283 PF00792 PI3K_C2: Phosphoinosi 81.5 15 0.00033 35.5 10.6 54 627-688 23-85 (142)
284 cd08694 C2_Dock-A C2 domains f 78.0 15 0.00032 37.4 9.3 59 39-98 53-114 (196)
285 KOG1329 Phospholipase D1 [Lipi 77.6 2.8 6E-05 51.3 4.8 105 611-723 136-242 (887)
286 PF15625 CC2D2AN-C2: CC2D2A N- 77.0 40 0.00087 33.6 12.3 103 27-135 36-163 (168)
287 PF11618 DUF3250: Protein of u 74.2 7.9 0.00017 35.4 5.8 97 31-132 2-104 (107)
288 smart00142 PI3K_C2 Phosphoinos 73.4 17 0.00037 32.8 7.8 70 429-508 13-91 (100)
289 KOG0694 Serine/threonine prote 71.0 1.4 2.9E-05 52.3 0.0 96 26-134 26-122 (694)
290 PF11618 DUF3250: Protein of u 70.3 40 0.00087 30.8 9.4 93 616-721 2-105 (107)
291 PF14429 DOCK-C2: C2 domain in 67.8 18 0.00038 36.8 7.4 59 40-99 60-120 (184)
292 KOG3385 V-SNARE [Intracellular 67.4 15 0.00032 33.5 5.7 73 863-940 25-115 (118)
293 PF06398 Pex24p: Integral pero 64.1 8 0.00017 43.9 4.5 42 902-943 19-63 (359)
294 PF08151 FerI: FerI (NUC094) d 62.6 20 0.00044 30.1 5.4 42 518-561 1-44 (72)
295 PTZ00447 apical membrane antig 62.2 75 0.0016 34.7 10.7 110 8-131 59-171 (508)
296 PF14429 DOCK-C2: C2 domain in 61.3 42 0.00092 34.0 8.8 59 624-687 59-120 (184)
297 PF15625 CC2D2AN-C2: CC2D2A N- 60.0 50 0.0011 32.9 8.8 68 613-689 37-107 (168)
298 cd05137 RasGAP_CLA2_BUD2 CLA2/ 52.3 69 0.0015 36.7 9.3 43 677-721 1-44 (395)
299 PF07002 Copine: Copine; Inte 51.8 11 0.00025 36.5 2.6 31 739-788 1-31 (146)
300 PF08151 FerI: FerI (NUC094) d 47.7 24 0.00051 29.7 3.5 46 356-403 2-51 (72)
301 KOG3543 Ca2+-dependent activat 47.3 73 0.0016 37.4 8.3 86 589-686 342-427 (1218)
302 PF06219 DUF1005: Protein of u 46.2 2.4E+02 0.0053 32.0 11.8 108 612-722 35-168 (460)
303 PF14909 SPATA6: Spermatogenes 45.7 89 0.0019 29.9 7.3 83 275-362 4-101 (140)
304 cd08694 C2_Dock-A C2 domains f 42.1 1.1E+02 0.0024 31.2 7.9 59 624-686 53-114 (196)
305 PF02453 Reticulon: Reticulon; 41.8 11 0.00024 37.5 0.8 58 907-964 95-152 (169)
306 PF04842 DUF639: Plant protein 41.1 24 0.00052 42.4 3.4 59 900-958 494-555 (683)
307 KOG1329 Phospholipase D1 [Lipi 40.5 26 0.00057 43.2 3.8 101 28-134 138-241 (887)
308 cd08695 C2_Dock-B C2 domains f 36.9 82 0.0018 32.0 6.0 51 464-520 54-111 (189)
309 cd08679 C2_DOCK180_related C2 36.5 1.7E+02 0.0038 29.3 8.5 59 625-687 54-115 (178)
310 cd08696 C2_Dock-C C2 domains f 35.0 1.5E+02 0.0032 30.0 7.5 62 624-687 54-118 (179)
311 PF14924 DUF4497: Protein of u 33.8 1.1E+02 0.0023 28.3 5.9 63 652-722 29-105 (112)
312 PF06667 PspB: Phage shock pro 33.1 73 0.0016 27.0 4.2 20 828-847 10-30 (75)
313 KOG4027 Uncharacterized conser 30.5 5.1E+02 0.011 25.3 9.6 72 27-99 25-110 (187)
314 PF14909 SPATA6: Spermatogenes 30.0 4.7E+02 0.01 25.2 9.4 89 8-101 3-100 (140)
315 cd08679 C2_DOCK180_related C2 29.9 1.3E+02 0.0027 30.4 6.2 39 41-80 54-92 (178)
316 cd05137 RasGAP_CLA2_BUD2 CLA2/ 29.9 55 0.0012 37.5 4.0 44 89-133 1-44 (395)
317 cd08697 C2_Dock-D C2 domains f 29.0 2.7E+02 0.0059 28.2 8.3 64 624-687 56-123 (185)
318 PRK09458 pspB phage shock prot 28.6 2E+02 0.0044 24.4 5.9 20 827-846 9-29 (75)
319 KOG4111 Translocase of outer m 28.0 1.4E+02 0.003 28.2 5.3 66 864-934 28-95 (136)
320 PF00957 Synaptobrevin: Synapt 28.0 1.9E+02 0.0041 25.2 6.3 33 892-924 37-69 (89)
321 KOG3543 Ca2+-dependent activat 27.9 3.1E+02 0.0066 32.6 9.2 111 274-393 342-458 (1218)
322 cd08697 C2_Dock-D C2 domains f 27.7 1.6E+02 0.0034 29.9 6.4 41 39-80 56-96 (185)
323 PF06219 DUF1005: Protein of u 27.6 1.7E+02 0.0036 33.3 6.9 108 28-135 36-169 (460)
324 PF02453 Reticulon: Reticulon; 27.4 20 0.00044 35.5 0.0 29 912-940 1-29 (169)
325 PF01544 CorA: CorA-like Mg2+ 26.6 1.8E+02 0.0039 31.5 7.3 70 883-958 193-262 (292)
326 TIGR02976 phageshock_pspB phag 25.7 1.2E+02 0.0025 25.9 4.1 21 827-847 9-30 (75)
327 cd08696 C2_Dock-C C2 domains f 24.9 2.2E+02 0.0049 28.7 6.8 40 463-508 54-95 (179)
328 PF03540 TFIID_30kDa: Transcri 24.6 51 0.0011 25.6 1.7 13 771-783 1-13 (51)
329 PF10409 PTEN_C2: C2 domain of 23.8 6.1E+02 0.013 23.8 9.6 92 8-100 5-97 (134)
330 KOG0904 Phosphatidylinositol 3 23.7 2.1E+02 0.0045 35.6 7.2 111 590-715 345-488 (1076)
331 PF10158 LOH1CR12: Tumour supp 20.1 1.6E+02 0.0035 28.0 4.5 32 886-917 87-118 (131)
No 1
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=100.00 E-value=2.9e-50 Score=380.72 Aligned_cols=151 Identities=60% Similarity=1.047 Sum_probs=146.2
Q ss_pred HHHHHhhhhccccccCCCCCCCCCCCcccCCCCCccccccCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhH
Q 002002 833 LLVAVVLSLRFRYRQRVPQNMDPRLSYVDVVGPDELDEEFDGFPTSRPSEVVRIRYDRLRALAGRAQTLLGDVAAQGERL 912 (983)
Q Consensus 833 ~~~~~v~~~~y~~~~~~~~~~d~~~s~~~~~~~~~~~~e~d~~~~~~~~~~~~~r~~~l~~~~~~vQ~~~~~~a~~~Er~ 912 (983)
+|++++.+|||++|||+|+|||+++|+++.+++||+|||||++|+++++++|++|||+||++++||||++||+|++|||+
T Consensus 6 l~~~~~~~w~yr~rpr~p~~~d~~ls~~~~~~~deldEEfD~~ps~~~~~~lr~Rydrlr~va~rvQ~vlgd~At~gERl 85 (156)
T PF08372_consen 6 LYLFLIGLWNYRFRPRHPPHMDTKLSHADSAHPDELDEEFDTFPSSRPPDSLRMRYDRLRSVAGRVQNVLGDVATQGERL 85 (156)
T ss_pred HHHHHHHHhccccCCCCCCCCCccccccccCCcchhhhhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444458999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccChhhHHHHHHHHHHHHHHHhhhhhhhhhhheeeecccCCCCCCCCCCchhhhhhcCCCCccCCC
Q 002002 913 EALFNWRDPRATWIFVVLCLVASLVFYAVPFKLFVLGSGFYYLRHPRFRGDMPSVPVNFVRRLPSLSDQIL 983 (983)
Q Consensus 913 ~~l~~w~~p~~t~~~~~~~~~~~~~l~~vp~r~~~~~~g~~~~r~p~~~~~~p~~~~~f~~r~p~~~d~~~ 983 (983)
+|+|||+||++|++|+++|+++++++|+||+||++++||+|++|||+||.++|+.++|||+||||++|+||
T Consensus 86 ~allsWrdP~aT~lf~~~clv~avvly~vP~r~l~l~~gly~~r~P~~R~~~P~~~~nff~RlPs~~d~~l 156 (156)
T PF08372_consen 86 QALLSWRDPRATALFVVFCLVAAVVLYFVPFRVLVLIWGLYKLRHPRFRNPLPSPPLNFFRRLPSRSDSML 156 (156)
T ss_pred HHhhccCCccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCccccCCCCcHHHHHHHHCCCchhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999997
No 2
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=100.00 E-value=3.3e-33 Score=326.89 Aligned_cols=537 Identities=20% Similarity=0.271 Sum_probs=378.2
Q ss_pred CCcEEEEEEEEeeCCCCCC--CCCCCCeEEEEEECC-eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCC
Q 002002 5 CNRKLIVEVCNAKNLMPKD--GQGTASAYVIVDFDG-QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDK 81 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d--~~g~~dPyv~v~~~~-~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~ 81 (983)
+.++|.|+|.+|++|...+ ..++.|||+++.+.+ ...||+++++++||+|||+|+..+..- .+.|.++|||.+
T Consensus 434 aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~----~d~L~LslyD~n 509 (1227)
T COG5038 434 AIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSF----TDPLNLSLYDFN 509 (1227)
T ss_pred eeEEEEEEEeeccCcccccccccCCCCceEEEEeccccCCccceeeccCCccccceEEEEeccc----CCceeEEEEecc
Confidence 3489999999999999988 578999999999865 677999999999999999999999876 789999999877
Q ss_pred CCCCCCCccEEEEEECccceecCCeeeEEEEceecCCcceeeeEEEEEEEEecCCCCCCCcccccccCCCCCCCcccCCC
Q 002002 82 KTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQIKGEIGLKVYYIDEDPPAPAPEAAAVAEPATKPEAAVADK 161 (983)
Q Consensus 82 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~s~~~G~l~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (983)
... +|+.+|.+.++|..+...+-..+.-+.+... +...|+|+..+.|++-.... ++
T Consensus 510 ~~~-sd~vvG~~~l~L~~L~~~~~~~ne~~e~~~~---~k~vGrL~yDl~ffp~~e~k-----~~--------------- 565 (1227)
T COG5038 510 SFK-SDKVVGSTQLDLALLHQNPVKKNELYEFLRN---TKNVGRLTYDLRFFPVIEDK-----KE--------------- 565 (1227)
T ss_pred ccC-CcceeeeEEechHHhhhccccccceeeeecc---CccceEEEEeeeeecccCCc-----cc---------------
Confidence 776 8999999999999998555555555555433 23569999999988432210 00
Q ss_pred CCCcccccccccCCcccccCcccccCCCCCCCCCCCCCCCCCCCCchhhccCCCCCccCCCCCCCCCCCCcccccccccc
Q 002002 162 PPEKAVGEEKKEEKPATVEGKKEEEKPKEEKPPEENTNPKPAEAPPAAAAVAATPVEVQNPPLAQSDKPSNAKDKATVTE 241 (983)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 241 (983)
. ... .| . +
T Consensus 566 --~-------~~s--------------~e-~-----------------------------~------------------- 573 (1227)
T COG5038 566 --L-------KGS--------------VE-P-----------------------------L------------------- 573 (1227)
T ss_pred --c-------ccc--------------cC-C-----------------------------c-------------------
Confidence 0 000 00 0 0
Q ss_pred ccccccccCccccccccCCCCCCcccccCCcCEEEEEEEEeecCC-CCCCCCc-EEEEEEcCee-eeeeec--CC-Cccc
Q 002002 242 TKTQELRLNEHELRSLTSDRSRSAYDLVDRMPFLYVRVLKAKRAG-NVSNGSL-YAKLVIGTHS-IKTKSQ--AD-KDWD 315 (983)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~V~v~~a~~L~-~~~~~dP-yv~v~~~~~~-~kTk~~--~~-P~Wn 315 (983)
. | .+.|.+.+++.++++|. ..++-+- +++++++++. +.|+.+ +. |.||
T Consensus 574 --------e----------------d--~n~GI~k~tl~~~~~l~~~~~~~~~~~a~l~~~~keV~st~~~k~t~~~~wn 627 (1227)
T COG5038 574 --------E----------------D--SNTGILKVTLREVKALDELSSKKDNKSAELYTNAKEVYSTGKLKFTNHPSWN 627 (1227)
T ss_pred --------c----------------c--CCcceeEEEeeccccccCccccccceeEEEEecceEEeccceeeeccCCcee
Confidence 0 0 01278999999999987 3333333 3999999987 455666 77 9999
Q ss_pred eEEEEeecCCCCCeEEEEEEcCCcCCccccCCceeEEEEEeccccCCCCCCCCCCCCceEEcccCCCCCceEEEEE-Eec
Q 002002 316 QVFAFDKEGLNSTSLEVSVWSEEKKENEECTENCLGTVLFDLQEVPKRVPPDSPLAPQWYSLESEKLPGNDVMLAV-WIG 394 (983)
Q Consensus 316 e~f~f~~~~~~~~~l~v~V~d~d~~~~d~~~d~~lG~~~i~l~~l~~~~~~~~~l~~~w~~L~~~~~~~g~i~l~~-~~g 394 (983)
+.+...+.+.....+.+.++|. ...+.+|.....|.++..+... .-.||++.. .+|+|.++. |-+
T Consensus 628 ~~~~~~v~~~~ns~~~~~~~d~-------~~g~~i~~~~~~l~~li~~t~d----t~~~f~~~~---~kg~I~~t~~W~P 693 (1227)
T COG5038 628 LQYNVLVTDRKNSSIKVVTFDV-------QSGKVIATEGSTLPDLIDRTLD----TFLVFPLRN---PKGRIFITNYWKP 693 (1227)
T ss_pred eecceEeccCcceeEEEEeccc-------ccCceeccccccchHhhhcccc----ceEEEEcCC---CcceEEEEeccce
Confidence 9999999988888999999994 2567888888888887655442 237999984 358898887 322
Q ss_pred cCcchhhhhhcccCCCCCCcccccccccCCceEEEEEEEEEeeCCCCCCCCCCCCCCCCcEEEEEECC-eEEEeeeeeec
Q 002002 395 TQADEAFQEAWQSDSGGLIPETRAKVYLSPKLWYLRLTVIQTQDLQPGSGSEPKVRSPELYVKGQLGA-QLFKTGRTSVG 473 (983)
Q Consensus 395 ~~~de~~~~~~~s~~~~~~~~~~~~~~~~p~l~~L~V~Viea~~L~~~~~~~d~~~~sdpyv~v~lg~-~~~rT~~~~~~ 473 (983)
.+.+. ...++.+....++.+||.|..|.+|... ...+++|||+++.+++ .++||-...
T Consensus 694 i~~~~---------------~~~s~~~~~~pIg~irv~v~~andl~n~----i~g~~~dPya~v~~n~~~k~rti~~~-- 752 (1227)
T COG5038 694 IYNAG---------------GSSSKTVYDTPIGAIRVSVRKANDLRNE----IPGGKSDPYATVLVNNLVKYRTIYGS-- 752 (1227)
T ss_pred eeccc---------------cccceeeecCccceEEEEeehhhccccc----ccCcccccceEEEecceeEEEEeccc--
Confidence 21111 1133445677788999999999999965 7889999999999976 566776553
Q ss_pred cCCCCCCCCcccceEEEEecCCCCCcEEEEEEeCc---CCceeEEEEEecccccccccCCC---------CCc-------
Q 002002 474 LSPSSSANPTWNEDLVFVAAEPFEPFLVVTVEDVT---NGCSVGHARIQMSTVERRIDDRA---------EPK------- 534 (983)
Q Consensus 474 ~~~~~t~nP~wne~f~f~~~~~~~~~L~i~V~D~d---~d~~lG~~~i~L~~l~~~~~~~~---------~~~------- 534 (983)
.++||.|++.....+..+.+ .+.+.++|.. +|..+|++.++++++..+.++.. ...
T Consensus 753 ----~~~npiw~~i~Yv~v~sk~~-r~~l~~~~~~~sgddr~lg~~~i~vsn~~~k~~~s~~~~~i~g~~~t~~l~~~~~ 827 (1227)
T COG5038 753 ----STLNPIWNEILYVPVTSKNQ-RLTLECMDYEESGDDRNLGEVNINVSNVSKKDEDSALMETIDGAEETGKLSLTGK 827 (1227)
T ss_pred ----CccccceeeeEEEEecCCcc-EEeeeeecchhccccceeceeeeeeeeeeecCCCcceEEeecCcccccccccccC
Confidence 69999999998887776554 4777777766 88999999999998776322210 000
Q ss_pred ---------ceEEe------c-----------------------cC-------CC----C--------------------
Q 002002 535 ---------SRWFN------L-----------------------VG-------DE----T-------------------- 545 (983)
Q Consensus 535 ---------~~w~~------L-----------------------~~-------~~----~-------------------- 545 (983)
-+.|+ + .. .. +
T Consensus 828 ~~~~tit~~~~f~p~~i~~s~ee~~~~~k~~~e~~~~~~~~~~l~ek~~~~~D~~~~~~e~~~v~~~~d~~~~k~k~~ln 907 (1227)
T COG5038 828 KVKGTITYKCRFYPAVIVLSLEEVRYVDKVSSEKRKSEKRKSALDEKTISLVDKEDSVEESIEVEELTDMYSLKPKLDLN 907 (1227)
T ss_pred CcceeEEEEEEEEeecccCChHHhcchhhhhhHHHHhhhhhcccCccccchhccccchhcceeeccccchhhcchhhhhh
Confidence 00000 0 00 00 0
Q ss_pred ---CCcceEE--------------EEEEEEec-ccccccccc-------------------ccC------------Cc--
Q 002002 546 ---RPYAGRI--------------HLRACLEG-GYHVLDEAA-------------------HVT------------SD-- 574 (983)
Q Consensus 546 ---~~~~G~l--------------~l~i~l~g-~~~v~~~~~-------------------~~~------------~d-- 574 (983)
.-..|.+ .+.+.++. +|+..-.+. .++ +|
T Consensus 908 e~lq~~sgv~~i~i~~g~l~~~~~~l~~f~Dd~~~~~i~s~~~~t~~~~~~~~g~~~ireL~~s~~tfrv~K~a~~~dk~ 987 (1227)
T COG5038 908 EALQYKSGVLGIQILSGELPDPGQYLQIFFDDASHPQIVSSKAPTRGERNGESGDTFIRELEYSETTFRVTKNAKKSDKV 987 (1227)
T ss_pred hhhcccCCceEEEEEEeecCCcceEEEEEecCCCCceeeccCCcccccccchhhhhhhhhhccceEEEEeccCCcccCce
Confidence 0001111 12222221 111100000 000 00
Q ss_pred ----hhHH---HHh----------------h----cc------------CCcEEEEEEEceeccccccccCCCCCCCCCc
Q 002002 575 ----VRAA---AKQ----------------L----AK------------SPIGLLEVGIRGATNLLPVKTKDGTRGTTDA 615 (983)
Q Consensus 575 ----~~~~---~~~----------------l----~~------------~~~g~L~v~v~~a~~L~~~~~~d~~~g~sDp 615 (983)
.-++ .++ + |. ...|-|.+.+.+|.||++. |. +|.+||
T Consensus 988 v~e~t~~t~~lvs~~~~kp~~ln~~g~~~~~v~~~~tPv~~~l~~~emv~nsG~l~I~~~~~~nl~~~---d~-ng~sDp 1063 (1227)
T COG5038 988 VCEVTLPTLDLVSNAYEKPSSLNFPGSAKVLVQVSYTPVPVKLPPVEMVENSGYLTIMLRSGENLPSS---DE-NGYSDP 1063 (1227)
T ss_pred eeecccchhHHHHHhhCCCcEEecCCCceEEEEEEEeecccccCcceeecccCcEEEEEeccCCCccc---cc-CCCCCc
Confidence 0000 000 0 00 2378899999999999776 66 899999
Q ss_pred EEEEEECCE-EEEeeeecCCCCCeeceEEEEEEec-CCCEEEEEEEeCCCCCCcCCCCCCCCceeEEEEEEcccccCCCe
Q 002002 616 YVVAKYGPK-WVRTRTILDRFNPRWNEQYTWDVYD-PCTVLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRV 693 (983)
Q Consensus 616 y~~~~~~~~-~~rT~~~~~t~nP~Wne~~~~~v~~-~~~~l~i~v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~ 693 (983)
||++.+.++ .++|+++++|+||.|||+++++|.. -...++|.|+|||... +++.||.+.|+|+.|+.+..
T Consensus 1064 fv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~~~--------knd~lg~~~idL~~l~~~~~ 1135 (1227)
T COG5038 1064 FVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWDSGE--------KNDLLGTAEIDLSKLEPGGT 1135 (1227)
T ss_pred eEEEEecceecccccchhccCCCCccccceEeeeccccceEEEEEeecccCC--------CccccccccccHhhcCcCCc
Confidence 999999875 8899999999999999999999974 4559999999999876 67799999999999999988
Q ss_pred EEEEEEeeecCCCCCccceEEEEEEEEE
Q 002002 694 YLNSYSLTVLLPGGAKKMGEIEIAVRFT 721 (983)
Q Consensus 694 ~~~~~~L~~~~~~g~~~~G~l~l~~~f~ 721 (983)
+....+|..+. .+ ...|.++....|.
T Consensus 1136 ~n~~i~ldgk~-~~-~~~g~~~~~~~~r 1161 (1227)
T COG5038 1136 TNSNIPLDGKT-FI-VLDGTLHPGFNFR 1161 (1227)
T ss_pred cceeeeccCcc-eE-ecccEeecceecc
Confidence 88888887664 22 3458888877664
No 3
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.93 E-value=6.5e-24 Score=249.49 Aligned_cols=391 Identities=17% Similarity=0.220 Sum_probs=289.3
Q ss_pred CCcCEEEEEEEEeecCC-----CCCCCCcEEEEEEcCe-eeeeeec--CC-CccceEEEEeecCCCCCeEEEEEEcCCcC
Q 002002 270 DRMPFLYVRVLKAKRAG-----NVSNGSLYAKLVIGTH-SIKTKSQ--AD-KDWDQVFAFDKEGLNSTSLEVSVWSEEKK 340 (983)
Q Consensus 270 ~~~~~L~V~v~~a~~L~-----~~~~~dPyv~v~~~~~-~~kTk~~--~~-P~Wne~f~f~~~~~~~~~l~v~V~d~d~~ 340 (983)
...|++.|+|.+|++|. ..+..|||+.+.+.+. ..||++. ++ |+|||+|+.++... ++.|.|+|||.+
T Consensus 433 ~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~-~d~L~LslyD~n-- 509 (1227)
T COG5038 433 TAIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSF-TDPLNLSLYDFN-- 509 (1227)
T ss_pred CeeEEEEEEEeeccCcccccccccCCCCceEEEEeccccCCccceeeccCCccccceEEEEeccc-CCceeEEEEecc--
Confidence 45699999999999997 2468899999998776 4799998 66 99999999999988 999999999965
Q ss_pred CccccCCceeEEEEEeccccCCCCCCCCCCCCceEEcccCCCCCceEEEEEE-eccCcchhhhhhcccCCCCCCcccccc
Q 002002 341 ENEECTENCLGTVLFDLQEVPKRVPPDSPLAPQWYSLESEKLPGNDVMLAVW-IGTQADEAFQEAWQSDSGGLIPETRAK 419 (983)
Q Consensus 341 ~~d~~~d~~lG~~~i~l~~l~~~~~~~~~l~~~w~~L~~~~~~~g~i~l~~~-~g~~~de~~~~~~~s~~~~~~~~~~~~ 419 (983)
++.+|+.+|+..++|..+..+..... +-+.+....+..|++...+. +.+-.+..-. .+ ...
T Consensus 510 --~~~sd~vvG~~~l~L~~L~~~~~~~n----e~~e~~~~~k~vGrL~yDl~ffp~~e~k~~~------~~------s~e 571 (1227)
T COG5038 510 --SFKSDKVVGSTQLDLALLHQNPVKKN----ELYEFLRNTKNVGRLTYDLRFFPVIEDKKEL------KG------SVE 571 (1227)
T ss_pred --ccCCcceeeeEEechHHhhhcccccc----ceeeeeccCccceEEEEeeeeecccCCcccc------cc------ccC
Confidence 37899999999999998876654332 23444444567899999884 3322221100 00 000
Q ss_pred cccCCceEEEEEEEEEeeCCCCCCCCCCCCCCCCcEEEEEECCe-EEEeeeeeeccCCCCCCCCcccceEEEEecCCCCC
Q 002002 420 VYLSPKLWYLRLTVIQTQDLQPGSGSEPKVRSPELYVKGQLGAQ-LFKTGRTSVGLSPSSSANPTWNEDLVFVAAEPFEP 498 (983)
Q Consensus 420 ~~~~p~l~~L~V~Viea~~L~~~~~~~d~~~~sdpyv~v~lg~~-~~rT~~~~~~~~~~~t~nP~wne~f~f~~~~~~~~ 498 (983)
.......+.+.+++.++++|... ......-++.+++..+ ++-|+..+ .+.+|.||+++...+..-...
T Consensus 572 ~~ed~n~GI~k~tl~~~~~l~~~-----~~~~~~~~a~l~~~~keV~st~~~k------~t~~~~wn~~~~~~v~~~~ns 640 (1227)
T COG5038 572 PLEDSNTGILKVTLREVKALDEL-----SSKKDNKSAELYTNAKEVYSTGKLK------FTNHPSWNLQYNVLVTDRKNS 640 (1227)
T ss_pred CcccCCcceeEEEeeccccccCc-----cccccceeEEEEecceEEeccceee------eccCCceeeecceEeccCcce
Confidence 01122357899999999999742 2222333388888654 55557664 589999999999888877777
Q ss_pred cEEEEEEeCcCCceeEEEEEecccccccccCCCCCcceEEeccCCCCCCcceEEEEEEEEeccccccccccccCCchhHH
Q 002002 499 FLVVTVEDVTNGCSVGHARIQMSTVERRIDDRAEPKSRWFNLVGDETRPYAGRIHLRACLEGGYHVLDEAAHVTSDVRAA 578 (983)
Q Consensus 499 ~L~i~V~D~d~d~~lG~~~i~L~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~l~l~i~l~g~~~v~~~~~~~~~d~~~~ 578 (983)
.+.+.+.|....+.+|....+|.++..+. .....||++..+ +|+|.+..+..+.|...+.+
T Consensus 641 ~~~~~~~d~~~g~~i~~~~~~l~~li~~t----~dt~~~f~~~~~-----kg~I~~t~~W~Pi~~~~~~~---------- 701 (1227)
T COG5038 641 SIKVVTFDVQSGKVIATEGSTLPDLIDRT----LDTFLVFPLRNP-----KGRIFITNYWKPIYNAGGSS---------- 701 (1227)
T ss_pred eEEEEecccccCceeccccccchHhhhcc----ccceEEEEcCCC-----cceEEEEeccceeecccccc----------
Confidence 88899988667788999999998876432 456789999876 78999887655544221111
Q ss_pred HHhhccCCcEEEEEEEceeccccccccCCCCCCCCCcEEEEEECC-EEEEeeeecCCCCCeeceEEEEEEecCCCEEEEE
Q 002002 579 AKQLAKSPIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP-KWVRTRTILDRFNPRWNEQYTWDVYDPCTVLTIG 657 (983)
Q Consensus 579 ~~~l~~~~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~-~~~rT~~~~~t~nP~Wne~~~~~v~~~~~~l~i~ 657 (983)
++.....++|.++|.|..|.+|. +... .|++|||+.+.+++ .++||-....++||.||+....++.++.+.+.++
T Consensus 702 s~~~~~~pIg~irv~v~~andl~---n~i~-g~~~dPya~v~~n~~~k~rti~~~~~~npiw~~i~Yv~v~sk~~r~~l~ 777 (1227)
T COG5038 702 SKTVYDTPIGAIRVSVRKANDLR---NEIP-GGKSDPYATVLVNNLVKYRTIYGSSTLNPIWNEILYVPVTSKNQRLTLE 777 (1227)
T ss_pred ceeeecCccceEEEEeehhhccc---cccc-CcccccceEEEecceeEEEEecccCccccceeeeEEEEecCCccEEeee
Confidence 11122468999999999999994 4456 89999999999987 6889999999999999999999999999999999
Q ss_pred EEeCCCCCCcCCCCCCCCceeEEEEEEcccccC----CCeEEEEE--Eeee-cCCCCCccceEEEEEEEEEec
Q 002002 658 VFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDT----NRVYLNSY--SLTV-LLPGGAKKMGEIEIAVRFTCS 723 (983)
Q Consensus 658 v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~----~~~~~~~~--~L~~-~~~~g~~~~G~l~l~~~f~~~ 723 (983)
++|....+ .|..||.+.|+++++.. +..+..-. .... ....|.+.+|++.+..+|.+.
T Consensus 778 ~~~~~~sg--------ddr~lg~~~i~vsn~~~k~~~s~~~~~i~g~~~t~~l~~~~~~~~~tit~~~~f~p~ 842 (1227)
T COG5038 778 CMDYEESG--------DDRNLGEVNINVSNVSKKDEDSALMETIDGAEETGKLSLTGKKVKGTITYKCRFYPA 842 (1227)
T ss_pred eecchhcc--------ccceeceeeeeeeeeeecCCCcceEEeecCcccccccccccCCcceeEEEEEEEEee
Confidence 99999988 78999999999999865 21111100 1111 112244557999999998753
No 4
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=8.3e-23 Score=231.50 Aligned_cols=211 Identities=25% Similarity=0.370 Sum_probs=174.2
Q ss_pred CcEEEEEEEEeeCCCCCCCCCCCCeEEEEEECC---eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCC
Q 002002 6 NRKLIVEVCNAKNLMPKDGQGTASAYVIVDFDG---QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKK 82 (983)
Q Consensus 6 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~---~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~ 82 (983)
...|.|+|++|++|+++|..|.+||||++.+-. .+.+|+++++++||.|||+|.|.+.. .++....|.+.|||.|+
T Consensus 166 ~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~-~~l~~~~L~l~V~~~dr 244 (421)
T KOG1028|consen 166 LNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPY-EELSNRVLHLSVYDFDR 244 (421)
T ss_pred CCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCH-HHhccCEEEEEEEecCC
Confidence 467999999999999999778999999999943 78999999999999999999999765 45678999999999999
Q ss_pred CCCCCCccEEEEEECccceecCCeeeEEEEceecCCcce-eeeEEEEEEEEecCCCCCCCcccccccCCCCCCCcccCCC
Q 002002 83 TGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQ-IKGEIGLKVYYIDEDPPAPAPEAAAVAEPATKPEAAVADK 161 (983)
Q Consensus 83 ~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~s~-~~G~l~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (983)
++ ++++||++.++|..+.. ......|++|......+. ..|||.+.++|.+.
T Consensus 245 fs-r~~~iGev~~~l~~~~~-~~~~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~-------------------------- 296 (421)
T KOG1028|consen 245 FS-RHDFIGEVILPLGEVDL-LSTTLFWKDLQPSSTDSEELAGELLLSLCYLPT-------------------------- 296 (421)
T ss_pred cc-cccEEEEEEecCccccc-cccceeeeccccccCCcccccceEEEEEEeecC--------------------------
Confidence 97 99999999999888762 233678999987643332 22788888877510
Q ss_pred CCCcccccccccCCcccccCcccccCCCCCCCCCCCCCCCCCCCCchhhccCCCCCccCCCCCCCCCCCCcccccccccc
Q 002002 162 PPEKAVGEEKKEEKPATVEGKKEEEKPKEEKPPEENTNPKPAEAPPAAAAVAATPVEVQNPPLAQSDKPSNAKDKATVTE 241 (983)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 241 (983)
T Consensus 297 -------------------------------------------------------------------------------- 296 (421)
T KOG1028|consen 297 -------------------------------------------------------------------------------- 296 (421)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccCccccccccCCCCCCcccccCCcCEEEEEEEEeecCC---CCCCCCcEEEEEEc--Ce---eeeeeec--CC
Q 002002 242 TKTQELRLNEHELRSLTSDRSRSAYDLVDRMPFLYVRVLKAKRAG---NVSNGSLYAKLVIG--TH---SIKTKSQ--AD 311 (983)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~V~v~~a~~L~---~~~~~dPyv~v~~~--~~---~~kTk~~--~~ 311 (983)
.+.|.|.|++||+|. ..+.+||||++.+- +. +.||.+. +.
T Consensus 297 ------------------------------~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~ 346 (421)
T KOG1028|consen 297 ------------------------------AGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTL 346 (421)
T ss_pred ------------------------------CCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCC
Confidence 157999999999997 45688999999983 32 3566666 77
Q ss_pred -CccceEEEEeec--CCCCCeEEEEEEcCCcCCccccCCceeEEEEEeccc
Q 002002 312 -KDWDQVFAFDKE--GLNSTSLEVSVWSEEKKENEECTENCLGTVLFDLQE 359 (983)
Q Consensus 312 -P~Wne~f~f~~~--~~~~~~l~v~V~d~d~~~~d~~~d~~lG~~~i~l~~ 359 (983)
|+|||+|.|.+. .+....|.|+|||+|. ++++++||.|.+....
T Consensus 347 npv~nesf~F~vp~~~l~~~~l~l~V~d~d~----~~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 347 NPVFNETFVFDVPPEQLAEVSLELTVWDHDT----LGSNDLIGRCILGSDS 393 (421)
T ss_pred CCcccccEEEeCCHHHhheeEEEEEEEEccc----ccccceeeEEEecCCC
Confidence 999999999765 6667789999999985 7889999999988774
No 5
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=3.9e-21 Score=217.90 Aligned_cols=209 Identities=25% Similarity=0.319 Sum_probs=168.5
Q ss_pred EEEEEEEEEeeCCCCCCCCCCCCCCCCcEEEEEECC---eEEEeeeeeeccCCCCCCCCcccceEEEEecCC--CCCcEE
Q 002002 427 WYLRLTVIQTQDLQPGSGSEPKVRSPELYVKGQLGA---QLFKTGRTSVGLSPSSSANPTWNEDLVFVAAEP--FEPFLV 501 (983)
Q Consensus 427 ~~L~V~Viea~~L~~~~~~~d~~~~sdpyv~v~lg~---~~~rT~~~~~~~~~~~t~nP~wne~f~f~~~~~--~~~~L~ 501 (983)
..|.|+|++|++|+.+ |..+.+||||++++.. .+.+|++.+ +++||.|||.|.|.+... ....|.
T Consensus 167 ~~L~V~V~qa~~Lp~~----d~~g~sdpyVK~~llPdk~~k~kT~v~r------~tlnP~fnEtf~f~v~~~~l~~~~L~ 236 (421)
T KOG1028|consen 167 NLLTVRVIQAHDLPAK----DRGGTSDPYVKVYLLPDKKGKFKTRVHR------KTLNPVFNETFRFEVPYEELSNRVLH 236 (421)
T ss_pred CEEEEEEEEecCCCcc----cCCCCCCCeeEEEEcCCCCCcceeeeee------cCcCCccccceEeecCHHHhccCEEE
Confidence 4599999999999987 7667899999999953 568899885 599999999999986533 356899
Q ss_pred EEEEeCc---CCceeEEEEEecccccccccCCCCCcceEEeccCCCC--CCcceEEEEEEEEeccccccccccccCCchh
Q 002002 502 VTVEDVT---NGCSVGHARIQMSTVERRIDDRAEPKSRWFNLVGDET--RPYAGRIHLRACLEGGYHVLDEAAHVTSDVR 576 (983)
Q Consensus 502 i~V~D~d---~d~~lG~~~i~L~~l~~~~~~~~~~~~~w~~L~~~~~--~~~~G~l~l~i~l~g~~~v~~~~~~~~~d~~ 576 (983)
++|||.| ++++||++.++|..+... .....|.+|..... ....|+|.+.++..
T Consensus 237 l~V~~~drfsr~~~iGev~~~l~~~~~~-----~~~~~w~~l~~~~~~~~~~~gel~~sL~Y~----------------- 294 (421)
T KOG1028|consen 237 LSVYDFDRFSRHDFIGEVILPLGEVDLL-----STTLFWKDLQPSSTDSEELAGELLLSLCYL----------------- 294 (421)
T ss_pred EEEEecCCcccccEEEEEEecCcccccc-----ccceeeeccccccCCcccccceEEEEEEee-----------------
Confidence 9999999 899999999999988753 23567999876421 22237888876532
Q ss_pred HHHHhhccCCcEEEEEEEceeccccccccCCCCCCCCCcEEEEEEC--C---EEEEeeeecCCCCCeeceEEEEEEec--
Q 002002 577 AAAKQLAKSPIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYG--P---KWVRTRTILDRFNPRWNEQYTWDVYD-- 649 (983)
Q Consensus 577 ~~~~~l~~~~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~--~---~~~rT~~~~~t~nP~Wne~~~~~v~~-- 649 (983)
+..|.|.|.|++|++|..+ +. .+.+||||.+.+- . .+.+|.+.++++||+|||.|.|.|..
T Consensus 295 --------p~~g~ltv~v~kar~L~~~---~~-~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~ 362 (421)
T KOG1028|consen 295 --------PTAGRLTVVVIKARNLKSM---DV-GGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQ 362 (421)
T ss_pred --------cCCCeEEEEEEEecCCCcc---cC-CCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHH
Confidence 3468999999999999776 55 7889999999863 2 56799999999999999999998853
Q ss_pred CC-CEEEEEEEeCCCCCCcCCCCCCCCceeEEEEEEccc
Q 002002 650 PC-TVLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLST 687 (983)
Q Consensus 650 ~~-~~l~i~v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~ 687 (983)
.. ..|.|+|||+|.++ ..++||.+.+....
T Consensus 363 l~~~~l~l~V~d~d~~~--------~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 363 LAEVSLELTVWDHDTLG--------SNDLIGRCILGSDS 393 (421)
T ss_pred hheeEEEEEEEEccccc--------ccceeeEEEecCCC
Confidence 22 37999999999998 45599988876554
No 6
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.87 E-value=1.1e-21 Score=191.48 Aligned_cols=140 Identities=53% Similarity=0.934 Sum_probs=122.1
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCCCCCcEEEEEECCeEEEeeeeeeccCCCCCCCCcccceEEEEecCCCCCcEEEEEEeC
Q 002002 428 YLRLTVIQTQDLQPGSGSEPKVRSPELYVKGQLGAQLFKTGRTSVGLSPSSSANPTWNEDLVFVAAEPFEPFLVVTVEDV 507 (983)
Q Consensus 428 ~L~V~Viea~~L~~~~~~~d~~~~sdpyv~v~lg~~~~rT~~~~~~~~~~~t~nP~wne~f~f~~~~~~~~~L~i~V~D~ 507 (983)
+|+|+|++|++|+.+ +..+.+||||++.+|++..||+++.+ +++||.|||.|.|.+.++..+.|.|.|+|+
T Consensus 1 ~L~V~Vi~A~~L~~~----d~~g~sDPYV~v~l~~~~~kTk~~~~-----~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~ 71 (150)
T cd04019 1 YLRVTVIEAQDLVPS----DKNRVPEVFVKAQLGNQVLRTRPSQT-----RNGNPSWNEELMFVAAEPFEDHLILSVEDR 71 (150)
T ss_pred CEEEEEEEeECCCCC----CCCCCCCeEEEEEECCEEeeeEeccC-----CCCCCcccCcEEEEecCccCCeEEEEEEEe
Confidence 489999999999987 88899999999999999999998852 379999999999999888778999999998
Q ss_pred c---CCceeEEEEEecccccccccCCCCCcceEEeccCCCC-------CCcceEEEEEEEEeccccccccccccCCchhH
Q 002002 508 T---NGCSVGHARIQMSTVERRIDDRAEPKSRWFNLVGDET-------RPYAGRIHLRACLEGGYHVLDEAAHVTSDVRA 577 (983)
Q Consensus 508 d---~d~~lG~~~i~L~~l~~~~~~~~~~~~~w~~L~~~~~-------~~~~G~l~l~i~l~g~~~v~~~~~~~~~d~~~ 577 (983)
+ ++++||++.++|.++....+.. ....+||+|.+..+ .+.+|+|+|+++|.|+|||++++++|++|++|
T Consensus 72 ~~~~~dd~lG~v~i~L~~l~~~~~~~-~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~~~~~~~~~~~~~~~~~ 150 (150)
T cd04019 72 VGPNKDEPLGRAVIPLNDIERRVDDR-PVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGGYHVLDESTHYSSDLRP 150 (150)
T ss_pred cCCCCCCeEEEEEEEHHHCcccCCCC-ccCCceEECcCCCCcccccccCcccccEEEEEEecCcceEeecccccccCCCC
Confidence 8 6899999999999987543222 35789999987643 46679999999999999999999999999764
No 7
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.87 E-value=1.3e-21 Score=183.94 Aligned_cols=125 Identities=64% Similarity=1.076 Sum_probs=107.6
Q ss_pred EEEEEEceeccccccccCCCCCCCCCcEEEEEECCEEEEeeeecCCCCCeeceEEEEEEecCCCEEEEEEEeCCCCCCcC
Q 002002 589 LLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILDRFNPRWNEQYTWDVYDPCTVLTIGVFDNGRYKRDE 668 (983)
Q Consensus 589 ~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~~~~rT~~~~~t~nP~Wne~~~~~v~~~~~~l~i~v~D~d~~~~~~ 668 (983)
.|+|+|++|+||+....+|. .|++||||++++|+++.||+++++++||+|||+|.|.+.++...|+|+|||++..+.
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~-~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~-- 77 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDG-RGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHW-- 77 (126)
T ss_pred CeEEEEEEeECCcccccccc-CCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCccc--
Confidence 38999999999433344577 899999999999999999999999999999999999999888899999999998620
Q ss_pred CCCCCCCceeEEEEEEcccccCCCeEEEEEEeeecCCCCCccceEEEE
Q 002002 669 AGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLPGGAKKMGEIEI 716 (983)
Q Consensus 669 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l 716 (983)
.+...+|++||++.++|+++..+..+.+||+|...++++.++.|+|++
T Consensus 78 ~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 78 KEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred cccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCccCCcEEEe
Confidence 001115789999999999999999999999999887778888899986
No 8
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.86 E-value=4.4e-21 Score=214.18 Aligned_cols=244 Identities=19% Similarity=0.307 Sum_probs=192.9
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCCCCCcEEEEEECC-eEEEeeeeeeccCCCCCCCCcccceEEEEecCCCCCcEEEEEEe
Q 002002 428 YLRLTVIQTQDLQPGSGSEPKVRSPELYVKGQLGA-QLFKTGRTSVGLSPSSSANPTWNEDLVFVAAEPFEPFLVVTVED 506 (983)
Q Consensus 428 ~L~V~Viea~~L~~~~~~~d~~~~sdpyv~v~lg~-~~~rT~~~~~~~~~~~t~nP~wne~f~f~~~~~~~~~L~i~V~D 506 (983)
.|+|.|.||++|+.. +..|.+||||.+.+++ ++.||.++. +++.|.|.|+|.|.++..|. .|.|.|||
T Consensus 6 sl~vki~E~knL~~~----~~~g~~D~yC~v~lD~E~v~RT~tv~------ksL~PF~gEe~~~~iP~~F~-~l~fYv~D 74 (800)
T KOG2059|consen 6 SLKVKIGEAKNLPSY----GPSGMRDCYCTVNLDQEEVCRTATVE------KSLCPFFGEEFYFEIPRTFR-YLSFYVWD 74 (800)
T ss_pred ceeEEEeecccCCCC----CCCCCcCcceEEeecchhhhhhhhhh------hhcCCccccceEEecCccee-eEEEEEec
Confidence 489999999999987 8899999999999986 578999997 59999999999999987775 59999999
Q ss_pred Cc--CCceeEEEEEecccccccccCCCCCcceEEeccCCC-CCCcceEEEEEEEEeccccccccccccCCchhHHHHhhc
Q 002002 507 VT--NGCSVGHARIQMSTVERRIDDRAEPKSRWFNLVGDE-TRPYAGRIHLRACLEGGYHVLDEAAHVTSDVRAAAKQLA 583 (983)
Q Consensus 507 ~d--~d~~lG~~~i~L~~l~~~~~~~~~~~~~w~~L~~~~-~~~~~G~l~l~i~l~g~~~v~~~~~~~~~d~~~~~~~l~ 583 (983)
+| +|+.||++.|.-.+|... +..+.||.|..-. .....|+|++++.+..... ..
T Consensus 75 ~d~~~D~~IGKvai~re~l~~~-----~~~d~W~~L~~VD~dsEVQG~v~l~l~~~e~~~-------~~----------- 131 (800)
T KOG2059|consen 75 RDLKRDDIIGKVAIKREDLHMY-----PGKDTWFSLQPVDPDSEVQGKVHLELALTEAIQ-------SS----------- 131 (800)
T ss_pred cccccccccceeeeeHHHHhhC-----CCCccceeccccCCChhhceeEEEEEEeccccC-------CC-----------
Confidence 99 999999999999998764 4678999997543 3678999999987764321 00
Q ss_pred cCCcEEEEEEEceeccccccccCCCCCCCCCcEEEEEECCEE----EEeeeecCCCCCeeceEEEEEEecC---------
Q 002002 584 KSPIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKW----VRTRTILDRFNPRWNEQYTWDVYDP--------- 650 (983)
Q Consensus 584 ~~~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~~~----~rT~~~~~t~nP~Wne~~~~~v~~~--------- 650 (983)
-+.-.++.++.+.|.. +|.+||||.+...+.+ .+|.+.++|.+|.|||.|.|.+...
T Consensus 132 -----~~~c~~L~~r~~~P~~-----~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~ 201 (800)
T KOG2059|consen 132 -----GLVCHVLKTRQGLPII-----NGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLF 201 (800)
T ss_pred -----cchhhhhhhcccCcee-----CCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhc
Confidence 0112234455555542 6779999999986644 4999999999999999999998543
Q ss_pred -------CCEEEEEEEeCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeeecCCCCCc-----cceEEEEEE
Q 002002 651 -------CTVLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLPGGAK-----KMGEIEIAV 718 (983)
Q Consensus 651 -------~~~l~i~v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~-----~~G~l~l~~ 718 (983)
--.|.+++||+.... .+++|+|++++++..+........||-|.... .|.+ .-|.+++.+
T Consensus 202 ~~~~e~~~l~irv~lW~~~~~~-------~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp~~-~g~~~~~~~~lGslrl~v 273 (800)
T KOG2059|consen 202 MPEEEDDMLEIRVDLWNDLNLV-------INDVFLGEVRVPVDVLRQKSSPAAWYYLQPRP-NGEKSSDGGDLGSLRLNV 273 (800)
T ss_pred CcccCCceeeEEEeeccchhhh-------hhhhhceeEEeehhhhhhccCccceEEEecCC-CcccCCCCCCccceeeeE
Confidence 227899999955443 26889999999999987666678999888763 2211 248899999
Q ss_pred EEEec
Q 002002 719 RFTCS 723 (983)
Q Consensus 719 ~f~~~ 723 (983)
+|+.+
T Consensus 274 ~y~~D 278 (800)
T KOG2059|consen 274 TYTED 278 (800)
T ss_pred Eeeec
Confidence 99864
No 9
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.85 E-value=1.3e-20 Score=176.06 Aligned_cols=119 Identities=21% Similarity=0.337 Sum_probs=103.9
Q ss_pred cEEEEEEEceeccccccccCCCCCCCCCcEEEEEECCEEEEeeeecC-CCCCeeceEEEEEEecCCCEEEEEEEeCCCCC
Q 002002 587 IGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILD-RFNPRWNEQYTWDVYDPCTVLTIGVFDNGRYK 665 (983)
Q Consensus 587 ~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~~~~rT~~~~~-t~nP~Wne~~~~~v~~~~~~l~i~v~D~d~~~ 665 (983)
.|.|+|+|++|++|+.. + .|++||||++.+|+..+||+++.+ +.||+|||+|.|++.+....|.|+|||+|.++
T Consensus 1 ~g~L~v~v~~Ak~l~~~---~--~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~ 75 (121)
T cd04016 1 VGRLSITVVQAKLVKNY---G--LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFT 75 (121)
T ss_pred CcEEEEEEEEccCCCcC---C--CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCc
Confidence 38999999999988432 3 689999999999999999999986 79999999999999876678999999999988
Q ss_pred CcCCCCCCCCceeEEEEEEcc-cccCCCeEEEEEEeeecCCCCCccceEEEEEEEE
Q 002002 666 RDEAGKPGKDVRVGKIRVRLS-TLDTNRVYLNSYSLTVLLPGGAKKMGEIEIAVRF 720 (983)
Q Consensus 666 ~~~~~~~~~d~~lG~~~i~l~-~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~f 720 (983)
+|++||.+.|+|. .+..|+....||+|... +|.++.|.|+|.+.|
T Consensus 76 --------~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~--~~~~~~g~i~l~l~y 121 (121)
T cd04016 76 --------MDERIAWTHITIPESVFNGETLDDWYSLSGK--QGEDKEGMINLVFSY 121 (121)
T ss_pred --------CCceEEEEEEECchhccCCCCccccEeCcCc--cCCCCceEEEEEEeC
Confidence 7889999999996 67888888999999864 344567999999876
No 10
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.84 E-value=1.8e-20 Score=179.16 Aligned_cols=127 Identities=54% Similarity=0.982 Sum_probs=111.4
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCeEEEEEECCeEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCCCCC
Q 002002 8 KLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKTGKRS 87 (983)
Q Consensus 8 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~~~d 87 (983)
+|.|+|++|++|.+++..|.+||||++.+++++++|+++++++||.|||+|.|.+..+..+....|.|.|||.+..++++
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d 80 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRR 80 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCC
Confidence 58999999999999999999999999999999999999999999999999999997654333568999999877764368
Q ss_pred CccEEEEEECccceecCCeeeEEEEceecCCcceeeeEEEEEEEEec
Q 002002 88 TFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQIKGEIGLKVYYID 134 (983)
Q Consensus 88 ~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~s~~~G~l~l~i~~~~ 134 (983)
+|||++.++++.+...+....+||+|++++..++.+|+|+|++.+++
T Consensus 81 ~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~ 127 (127)
T cd04022 81 SFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRGEIGLKVYITD 127 (127)
T ss_pred CeeeEEEEcHHHcCCCCCccceEeEeeeCCCCCCccEEEEEEEEEcC
Confidence 99999999999988556778899999988766678999999998763
No 11
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.84 E-value=2.5e-20 Score=208.19 Aligned_cols=238 Identities=21% Similarity=0.334 Sum_probs=183.4
Q ss_pred CcEEEEEEEEeeCCCCCCCCCCCCeEEEEEECC-eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCC
Q 002002 6 NRKLIVEVCNAKNLMPKDGQGTASAYVIVDFDG-QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKTG 84 (983)
Q Consensus 6 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~ 84 (983)
...|.|.|.+|+||++++..|++||||.|.++. ...||.++.+++.|.|.|.|+|++.-. -..|.|.|||.| .+
T Consensus 4 ~~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~----F~~l~fYv~D~d-~~ 78 (800)
T KOG2059|consen 4 EQSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRT----FRYLSFYVWDRD-LK 78 (800)
T ss_pred ccceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCcc----eeeEEEEEeccc-cc
Confidence 457999999999999999999999999999987 789999999999999999999999765 789999999877 65
Q ss_pred CCCCccEEEEEECccceecCCeeeEEEEceecCCcceeeeEEEEEEEEecCCCCCCCcccccccCCCCCCCcccCCCCCC
Q 002002 85 KRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQIKGEIGLKVYYIDEDPPAPAPEAAAVAEPATKPEAAVADKPPE 164 (983)
Q Consensus 85 ~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~s~~~G~l~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (983)
+|+.||++.|.-.++.. ....+.|+.|..-...+.++|+|+|++.+......
T Consensus 79 -~D~~IGKvai~re~l~~-~~~~d~W~~L~~VD~dsEVQG~v~l~l~~~e~~~~-------------------------- 130 (800)
T KOG2059|consen 79 -RDDIIGKVAIKREDLHM-YPGKDTWFSLQPVDPDSEVQGKVHLELALTEAIQS-------------------------- 130 (800)
T ss_pred -cccccceeeeeHHHHhh-CCCCccceeccccCCChhhceeEEEEEEeccccCC--------------------------
Confidence 99999999999888873 34788999999999889999999999965421100
Q ss_pred cccccccccCCcccccCcccccCCCCCCCCCCCCCCCCCCCCchhhccCCCCCccCCCCCCCCCCCCccccccccccccc
Q 002002 165 KAVGEEKKEEKPATVEGKKEEEKPKEEKPPEENTNPKPAEAPPAAAAVAATPVEVQNPPLAQSDKPSNAKDKATVTETKT 244 (983)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 244 (983)
T Consensus 131 -------------------------------------------------------------------------------- 130 (800)
T KOG2059|consen 131 -------------------------------------------------------------------------------- 130 (800)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCccccccccCCCCCCcccccCCcCEEEEEEEEeecC-C-CCCCCCcEEEEEEcCee----eeeeec--CC-Cccc
Q 002002 245 QELRLNEHELRSLTSDRSRSAYDLVDRMPFLYVRVLKAKRA-G-NVSNGSLYAKLVIGTHS----IKTKSQ--AD-KDWD 315 (983)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~V~v~~a~~L-~-~~~~~dPyv~v~~~~~~----~kTk~~--~~-P~Wn 315 (983)
.-+..++.++|++ + ..+.+|||+.++..|.. .+|+++ +. |.||
T Consensus 131 ----------------------------~~~~c~~L~~r~~~P~~~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~ 182 (800)
T KOG2059|consen 131 ----------------------------SGLVCHVLKTRQGLPIINGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFD 182 (800)
T ss_pred ----------------------------CcchhhhhhhcccCceeCCCCCcceEEeecccchhhccccceeeeccCcchh
Confidence 0001111222233 3 34669999999997753 478877 77 9999
Q ss_pred eEEEEeecCC---------------CCCeEEEEEEcCCcCCccccCCceeEEEEEeccccCCCCCCCCCCCCceEEcccC
Q 002002 316 QVFAFDKEGL---------------NSTSLEVSVWSEEKKENEECTENCLGTVLFDLQEVPKRVPPDSPLAPQWYSLESE 380 (983)
Q Consensus 316 e~f~f~~~~~---------------~~~~l~v~V~d~d~~~~d~~~d~~lG~~~i~l~~l~~~~~~~~~l~~~w~~L~~~ 380 (983)
|+|.|.+... ..-.|.|.+|+... -..+++|+|++.+++..+-....+ ..||.|...
T Consensus 183 Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~---~~~~~~FlGevrv~v~~~~~~s~p-----~~W~~Lqp~ 254 (800)
T KOG2059|consen 183 EVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLN---LVINDVFLGEVRVPVDVLRQKSSP-----AAWYYLQPR 254 (800)
T ss_pred hheeeeeccccccccchhcCcccCCceeeEEEeeccchh---hhhhhhhceeEEeehhhhhhccCc-----cceEEEecC
Confidence 9999987644 24468889999431 144799999999999877644442 479998633
Q ss_pred --------CCCCceEEEEEE
Q 002002 381 --------KLPGNDVMLAVW 392 (983)
Q Consensus 381 --------~~~~g~i~l~~~ 392 (983)
+..-|.+.+.+.
T Consensus 255 ~~g~~~~~~~~lGslrl~v~ 274 (800)
T KOG2059|consen 255 PNGEKSSDGGDLGSLRLNVT 274 (800)
T ss_pred CCcccCCCCCCccceeeeEE
Confidence 123466666664
No 12
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.83 E-value=7.4e-20 Score=171.04 Aligned_cols=118 Identities=16% Similarity=0.271 Sum_probs=102.4
Q ss_pred cEEEEEEEEeeCCCCCCCCCCCCeEEEEEECCeEEeeeCcCC-CCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCCC
Q 002002 7 RKLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFR-DLNPQWDERLEFLVHDAESMPTEILEINLYNDKKTGK 85 (983)
Q Consensus 7 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~-t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~~ 85 (983)
+.|.|+|++|++|+..+ .|++||||++.+++++++|+++.+ +.||+|||+|.|.+... ...|.|+|||++.++
T Consensus 2 g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~----~~~l~~~V~d~d~~~- 75 (121)
T cd04016 2 GRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEG----VDSIYIEIFDERAFT- 75 (121)
T ss_pred cEEEEEEEEccCCCcCC-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCC----CcEEEEEEEeCCCCc-
Confidence 68999999999887766 789999999999999999999876 79999999999999754 467999999988886
Q ss_pred CCCccEEEEEECcc-ceecCCeeeEEEEceecCCcceeeeEEEEEEEE
Q 002002 86 RSTFLGKVKIAGST-FAKVGSESSVYYPLEKRSVFSQIKGEIGLKVYY 132 (983)
Q Consensus 86 ~d~~lG~~~i~l~~-l~~~~~~~~~w~~L~~~~~~s~~~G~l~l~i~~ 132 (983)
+|++||++.+++.. +. .++..+.||+|.+..+. +..|+|+|.++|
T Consensus 76 ~dd~iG~~~i~l~~~~~-~g~~~~~W~~L~~~~~~-~~~g~i~l~l~y 121 (121)
T cd04016 76 MDERIAWTHITIPESVF-NGETLDDWYSLSGKQGE-DKEGMINLVFSY 121 (121)
T ss_pred CCceEEEEEEECchhcc-CCCCccccEeCcCccCC-CCceEEEEEEeC
Confidence 89999999999974 55 56778999999876543 456999999976
No 13
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.83 E-value=2.3e-20 Score=176.74 Aligned_cols=117 Identities=32% Similarity=0.555 Sum_probs=100.1
Q ss_pred CCcEEEEEEEceeccccccccCCCCCCCCCcEEEEEECCEEEEeeeecCCCCCeeceEEEEEEecCCCEEEEEEEeCCCC
Q 002002 585 SPIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILDRFNPRWNEQYTWDVYDPCTVLTIGVFDNGRY 664 (983)
Q Consensus 585 ~~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~~~~rT~~~~~t~nP~Wne~~~~~v~~~~~~l~i~v~D~d~~ 664 (983)
...|.|+|.|.+|.||... |. .++|||||++++|+++.||+++++++||+|||.|+|.+.+++.+|+++|||+|.+
T Consensus 3 ~~vGLL~v~v~~g~~L~~r---D~-~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~f 78 (168)
T KOG1030|consen 3 MLVGLLRVRVKRGKNLAIR---DF-LGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDPNTPLKVTVYDKDTF 78 (168)
T ss_pred ccceEEEEEEEeecCeeee---cc-ccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCCCceEEEEEEeCCCC
Confidence 3689999999999999765 65 5999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeeecCCCCCccceEEEEE
Q 002002 665 KRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLPGGAKKMGEIEIA 717 (983)
Q Consensus 665 ~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~ 717 (983)
+ .|++||.+.|+|..+.+.. ..+| |....+.|.. .|++.++
T Consensus 79 s--------~dD~mG~A~I~l~p~~~~~--~~~~-l~~~~~~gt~-~~~v~~s 119 (168)
T KOG1030|consen 79 S--------SDDFMGEATIPLKPLLEAQ--KMDY-LKLELLTGTA-IGKVLLS 119 (168)
T ss_pred C--------cccccceeeeccHHHHHHh--hhhc-cccccCCCcE-eeEEEec
Confidence 8 7889999999999988766 4455 5555455533 3555443
No 14
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=99.81 E-value=4.8e-19 Score=204.66 Aligned_cols=578 Identities=17% Similarity=0.187 Sum_probs=326.9
Q ss_pred cCCCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEECCeEEeeeCcCCCCCCeeeeEEEEEeee---cCC---CCCceEEEE
Q 002002 3 ESCNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHD---AES---MPTEILEIN 76 (983)
Q Consensus 3 ~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~WnE~f~f~v~~---~~~---l~~~~L~v~ 76 (983)
|+..+.+++.|.+|+.|.+.|..+-+|||+.+.+.++.+.|-++.+|+||.|+++..|.-.. ... -.-..+.++
T Consensus 202 e~~~~~lR~yiyQar~L~a~dk~~~sdp~a~v~f~~qs~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e 281 (1105)
T KOG1326|consen 202 EVIHSPLRSYIYQARALGAPDKDDESDPDAAVEFCGQSKETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFE 281 (1105)
T ss_pred hhhhhhhHHHHHHHHhhcCCCcccCCCchhhhhcccccceeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEEE
Confidence 34567788999999999999999999999999999999999999999999999999885321 100 023567899
Q ss_pred EEeCCCCCCCCCccEEEEEECccceecCCeeeEEEEceecCCcceeeeEEEEEEEEecCCCCCCCcccccccCCCCCCCc
Q 002002 77 LYNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQIKGEIGLKVYYIDEDPPAPAPEAAAVAEPATKPEA 156 (983)
Q Consensus 77 V~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~s~~~G~l~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (983)
|||.++.+ .++|+|+......-... .....|+++...+. ..|++.+....+....
T Consensus 282 ~yd~dr~g-~~ef~gr~~~~p~V~~~--~p~lkw~p~~rg~~---l~gd~l~a~eliq~~~------------------- 336 (1105)
T KOG1326|consen 282 VYDLDRSG-INEFKGRKKQRPYVMVQ--CPALKWVPTMRGAF---LDGDVLIAAELIQIGK------------------- 336 (1105)
T ss_pred eehhhhhc-hHHhhcccccceEEEec--CCccceEEeecccc---cccchhHHHHHHhhcC-------------------
Confidence 99888876 89999998766444331 45667888765432 2244332221110000
Q ss_pred ccCCCCCCcccccccccCCcccccCcccccCCCCCCCCCCCCCCCCCCCCchhhccCCCCCccCCCCCCCCCCCCccccc
Q 002002 157 AVADKPPEKAVGEEKKEEKPATVEGKKEEEKPKEEKPPEENTNPKPAEAPPAAAAVAATPVEVQNPPLAQSDKPSNAKDK 236 (983)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 236 (983)
+ ... +++.. +++ ..
T Consensus 337 -------------------------------------~--i~~----------------p~~~~-~~~----------~~ 350 (1105)
T KOG1326|consen 337 -------------------------------------P--IPQ----------------PPPQR-EII----------FS 350 (1105)
T ss_pred -------------------------------------C--CCC----------------CCccc-ccc----------ee
Confidence 0 000 00000 000 00
Q ss_pred cccccccccccccCccccccccCCCCCCcccccCCcCEEEEEEEEeecCC---CCCCCCcEEEEEEcCeeeeeeec-CC-
Q 002002 237 ATVTETKTQELRLNEHELRSLTSDRSRSAYDLVDRMPFLYVRVLKAKRAG---NVSNGSLYAKLVIGTHSIKTKSQ-AD- 311 (983)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~V~v~~a~~L~---~~~~~dPyv~v~~~~~~~kTk~~-~~- 311 (983)
+ .+...+ +.. +.+.+.|-..--|++. ......|-+-+.+|++...|-.+ +.
T Consensus 351 ~----------vp~~iR-----p~~---------q~~~~evl~wgLrn~k~~~m~~~~~P~~~~e~g~e~v~s~~I~~~k 406 (1105)
T KOG1326|consen 351 L----------VPKKIR-----PKT---------QIGKAELLMWGLRNPKKSGMASTFSPALLVEFGGERVSSFSIFNRK 406 (1105)
T ss_pred c----------cccCCC-----cce---------eeeeeehhhhhhcccccccccccCCcceeEeeCCceEeeeeehhhh
Confidence 0 000000 000 0012222222223332 23467899999999999988888 44
Q ss_pred --CccceEEEEee-----cCCCCCeEEEEEEcCCcCCccccCCceeEEEEEecc-ccCCCCCCC----CCC---------
Q 002002 312 --KDWDQVFAFDK-----EGLNSTSLEVSVWSEEKKENEECTENCLGTVLFDLQ-EVPKRVPPD----SPL--------- 370 (983)
Q Consensus 312 --P~Wne~f~f~~-----~~~~~~~l~v~V~d~d~~~~d~~~d~~lG~~~i~l~-~l~~~~~~~----~~l--------- 370 (983)
|.++..|.+-. ..++..++.++|+|.+. ++.-..+|.|.+.-- ....+.... ..+
T Consensus 407 ~npnf~s~~~~~~v~lpd~e~Y~ppl~akvvd~~~----fg~~~v~g~c~i~~l~nf~c~p~~~~~~~Pq~~~d~~~~~~ 482 (1105)
T KOG1326|consen 407 KNPNFPSRVLGRLVILPDEELYMPPLNAKVVDLRQ----FGRMEVVGQCKILSLYNFFCDPSAVNSITPQFASDPVSIMM 482 (1105)
T ss_pred hCCCCceeEEEEEEeccchHhhCccceeEEEeccc----ccceeehhhhcchhhhhhccCchhhcccCcCCCCCchhhhc
Confidence 88888777653 23457789999999874 889999999987532 211110000 000
Q ss_pred ----------CCceEEcccC-----------C--------C-------CCceEEEEEEeccCcch---hhh--hhcccC-
Q 002002 371 ----------APQWYSLESE-----------K--------L-------PGNDVMLAVWIGTQADE---AFQ--EAWQSD- 408 (983)
Q Consensus 371 ----------~~~w~~L~~~-----------~--------~-------~~g~i~l~~~~g~~~de---~~~--~~~~s~- 408 (983)
...|+..... + . .+....+.++ ...+| +|. +.|..+
T Consensus 483 ~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~w~k~~~~~~~~~k~~~~~~K~~~~LKiy--n~ele~v~ef~~l~D~~~~f 560 (1105)
T KOG1326|consen 483 GSTDNEIRHCNSSTLPASPHEDEEEREVDWWGKFYPSAEENAKWEVYEHKINVTLKIY--NMELEMVAEFRGLQDWAVTF 560 (1105)
T ss_pred CCchhhhhhccccCCCCCccccccceehhhhhhccccccccccccccccccceEEEEe--hhhhhhHHHHhhhhhcccee
Confidence 0011111100 0 0 0111122221 11111 110 111000
Q ss_pred ----------CCC-------------C-Cc-------ccc-cccc--cCCceEEEEEEEEEeeCCCCCCCCCCCCCCCCc
Q 002002 409 ----------SGG-------------L-IP-------ETR-AKVY--LSPKLWYLRLTVIQTQDLQPGSGSEPKVRSPEL 454 (983)
Q Consensus 409 ----------~~~-------------~-~~-------~~~-~~~~--~~p~l~~L~V~Viea~~L~~~~~~~d~~~~sdp 454 (983)
..+ + +. ..+ ...+ ..|....+||.|++|.+|.+. |.+|++||
T Consensus 561 ~l~rG~~~~e~~e~~Ivg~fKgl~rIyp~~~~~~~p~~pr~~~~~~~~~pi~~LvrVyvv~A~~L~p~----D~ng~adp 636 (1105)
T KOG1326|consen 561 KLYRGKEGLECLEQQIVGEFKGLFRIYPVPRNPSSPAPPRHFLDLPKEEPIKCLVRVYVVEAFSLQPS----DGNGDADP 636 (1105)
T ss_pred EeeeccccCCCcccchhhhhhcceeeecCCCccCCCCChhhhhcccccCcceeeEEEEEEEeeecccc----CCCCCcCc
Confidence 000 0 00 000 0000 025666799999999999998 99999999
Q ss_pred EEEEEECCeEEEeeeeeeccCCCCCCCCcccceEEEEecCCCCCcEEEEEEeCc---CCceeEEEEEeccc-cccccc-C
Q 002002 455 YVKGQLGAQLFKTGRTSVGLSPSSSANPTWNEDLVFVAAEPFEPFLVVTVEDVT---NGCSVGHARIQMST-VERRID-D 529 (983)
Q Consensus 455 yv~v~lg~~~~rT~~~~~~~~~~~t~nP~wne~f~f~~~~~~~~~L~i~V~D~d---~d~~lG~~~i~L~~-l~~~~~-~ 529 (983)
||++.+|++....+.... .+++||+|++.|.+....|++..|.+.|||+| .|+.||+..++|.. ...... +
T Consensus 637 Yv~l~lGk~~~~d~~~yi----p~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~~d~~iget~iDLEnR~~T~~~a~ 712 (1105)
T KOG1326|consen 637 YVKLLLGKKRTLDRAHYI----PNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEAQDEKIGETTIDLENRWLTRHRAR 712 (1105)
T ss_pred eeeeeeccchhhhhhhcC----cCCCCcHHHHHHHhhcccchhhcceeEEEEeecccccchhhceehhhhhcccCcCCcc
Confidence 999999987754333221 37999999999999999999999999999999 79999999999975 221111 1
Q ss_pred CC-------CCcceEEecc----------CCCC---CCcceEEEEEEEEeccccccc-----------------------
Q 002002 530 RA-------EPKSRWFNLV----------GDET---RPYAGRIHLRACLEGGYHVLD----------------------- 566 (983)
Q Consensus 530 ~~-------~~~~~w~~L~----------~~~~---~~~~G~l~l~i~l~g~~~v~~----------------------- 566 (983)
++ .....|..-. .+.+ --+.+.. ..+.+.|.....|
T Consensus 713 cglaq~y~v~g~n~W~d~~~ps~iL~~~~Q~~~i~~P~~~~e~-~~i~~~g~~~~~d~~~~k~~~~~~L~~~~~r~~~~i 791 (1105)
T KOG1326|consen 713 CGLAQTYCVSGANIWRDRMDPSQILKEHCQPGGIPRPYYSYEV-SAIKWKGESDIYDEKEAKTIEVPHLGNAWERLALWI 791 (1105)
T ss_pred cCccceeeeeccccccCccCHHHHHHHhhcccCCCCCeecCCc-ceEEecChhhhhcccccCCCCCcccchHHHHHHHHh
Confidence 10 1223343311 1111 0001111 1222222100000
Q ss_pred --------cc---cccCCchhHHHH----hhcc------------------CCcEEEEEEEceeccccccccCCCCCC--
Q 002002 567 --------EA---AHVTSDVRAAAK----QLAK------------------SPIGLLEVGIRGATNLLPVKTKDGTRG-- 611 (983)
Q Consensus 567 --------~~---~~~~~d~~~~~~----~l~~------------------~~~g~L~v~v~~a~~L~~~~~~d~~~g-- 611 (983)
+. -...++..|..+ ++|. +..-.|+|.|-.-.+...-+. ++ .|
T Consensus 792 ~~~~~lvpehvetrtl~~~~~p~ieqgklq~Wvd~fp~d~~~ppl~itpr~~~~~~lrviiWnt~~v~l~dd-~~-~ge~ 869 (1105)
T KOG1326|consen 792 LMNQGLVPEHVETRTLHSKAFPNIEQGKLQMWVDFFPKDLYAPPLNITPRKPKKYELRVIIWNTDKVRLNDD-EI-TGEK 869 (1105)
T ss_pred hhhcCcCCcccccccccCccccchhhcccchhhhhcccccCCCCCCCCCCChhheeEEEEEeeccceeecCc-cc-eeee
Confidence 00 000111112211 1221 234567777766666643221 22 22
Q ss_pred CCCcEEEEEEC-C--EEEEeeeecCCC----CCeeceEEEEEEe-----------------c-----CCCEEEEEEEeCC
Q 002002 612 TTDAYVVAKYG-P--KWVRTRTILDRF----NPRWNEQYTWDVY-----------------D-----PCTVLTIGVFDNG 662 (983)
Q Consensus 612 ~sDpy~~~~~~-~--~~~rT~~~~~t~----nP~Wne~~~~~v~-----------------~-----~~~~l~i~v~D~d 662 (983)
.||-|+.=.+- . ++.+|.+.+.++ |=.|.-.|-|... + .-..|.|+|||+|
T Consensus 870 ~sdIyv~gw~~gdee~kq~tdvhyrsl~ge~~fnwr~~f~~Dyl~ae~~~vi~kke~~ws~dete~k~p~rl~iqiWD~d 949 (1105)
T KOG1326|consen 870 MSDIYVKGWVLGDEEEKQKTDVHYRSLTGEGNFNWRFVFPFDYLPAEQLCVIAKKEYSWSLDETEFKIPARLIIQIWDND 949 (1105)
T ss_pred ccceEEecccccchhhhcccceeeeeccCCcccceeeecccccchHhhHhhhhhhhhccccccccccCchheEEEecccC
Confidence 57889876653 3 566777777665 4555444433220 0 0125999999999
Q ss_pred CCCCcCCCCCCCCceeEEEEEEcccccCC----------------------CeEEEEEEeeecCCCCCccceEEEEEEEE
Q 002002 663 RYKRDEAGKPGKDVRVGKIRVRLSTLDTN----------------------RVYLNSYSLTVLLPGGAKKMGEIEIAVRF 720 (983)
Q Consensus 663 ~~~~~~~~~~~~d~~lG~~~i~l~~l~~~----------------------~~~~~~~~L~~~~~~g~~~~G~l~l~~~f 720 (983)
.++ +|++||...++|+++..+ +....|||+.........-+|.+++++..
T Consensus 950 ~fs--------~Dd~Lg~lELdL~~~~~pa~sa~~c~~~~~~~~~vslFe~k~v~GWwP~~a~~~~~~~l~Gkvem~lei 1021 (1105)
T KOG1326|consen 950 KFS--------KDDFLGALELDLSDMPAPAKSAKKCSLYMKKDKTVSLFEQKTVKGWWPCQAEEGDAKVLAGKVEMSLEI 1021 (1105)
T ss_pred ccC--------hhhhhhheeechhhCcCCCCCHHHCCceeccCcceehhhcccccccceeeecCCCcceecceeeeehhh
Confidence 998 899999999999886432 24568999988743333347888888744
No 15
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.80 E-value=3.9e-19 Score=169.71 Aligned_cols=117 Identities=25% Similarity=0.370 Sum_probs=101.2
Q ss_pred EEEEEceeccccccccCCCCCCCCCcEEEEEECCEEEEeeeecCCCCCeeceEEEEEEec------CCCEEEEEEEeCCC
Q 002002 590 LEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILDRFNPRWNEQYTWDVYD------PCTVLTIGVFDNGR 663 (983)
Q Consensus 590 L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~~~~rT~~~~~t~nP~Wne~~~~~v~~------~~~~l~i~v~D~d~ 663 (983)
++|+|++|+||+++ |. .|.+||||++++++...||+++++++||+|||.|.|.+.. ....|.|.|||++.
T Consensus 1 ~~V~V~~A~~L~~~---d~-~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~ 76 (126)
T cd08682 1 VQVTVLQARGLLCK---GK-SGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNL 76 (126)
T ss_pred CEEEEEECcCCcCC---CC-CcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccc
Confidence 47999999999765 55 7899999999999999999999999999999999999976 35689999999998
Q ss_pred CCCcCCCCCCCCceeEEEEEEccccc--CCCeEEEEEEeeecCCCCCccceEEEEEE
Q 002002 664 YKRDEAGKPGKDVRVGKIRVRLSTLD--TNRVYLNSYSLTVLLPGGAKKMGEIEIAV 718 (983)
Q Consensus 664 ~~~~~~~~~~~d~~lG~~~i~l~~l~--~~~~~~~~~~L~~~~~~g~~~~G~l~l~~ 718 (983)
++ +|++||++.|+|+++. .+.....||+|........+..|+|++.+
T Consensus 77 ~~--------~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~ 125 (126)
T cd08682 77 LG--------LDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDI 125 (126)
T ss_pred cC--------CCceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEe
Confidence 87 6889999999999987 56677899999865433334579999986
No 16
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.80 E-value=4.5e-19 Score=169.26 Aligned_cols=121 Identities=25% Similarity=0.428 Sum_probs=103.4
Q ss_pred EEEEEEEeeCCCCCCCCCCCCeEEEEEECCeEEeeeCcCCCCCCeeeeEEEEEeeec--CCCCCceEEEEEEeCCCCCCC
Q 002002 9 LIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHDA--ESMPTEILEINLYNDKKTGKR 86 (983)
Q Consensus 9 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~--~~l~~~~L~v~V~~~~~~~~~ 86 (983)
|+|+|++|+||+.++..|.+||||+|.+++++++|+++++++||+|||+|.|.+... ++.....|.|.|||.+.++ +
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~-~ 79 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLG-L 79 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccC-C
Confidence 579999999999999999999999999999999999999999999999999998662 1123678999999988776 7
Q ss_pred CCccEEEEEECcccee-cCCeeeEEEEceecCC-cceeeeEEEEEE
Q 002002 87 STFLGKVKIAGSTFAK-VGSESSVYYPLEKRSV-FSQIKGEIGLKV 130 (983)
Q Consensus 87 d~~lG~~~i~l~~l~~-~~~~~~~w~~L~~~~~-~s~~~G~l~l~i 130 (983)
|++||++.+++.++.. .+.....||+|.+... ..+..|+|+|++
T Consensus 80 d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~ 125 (126)
T cd08682 80 DKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDI 125 (126)
T ss_pred CceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEe
Confidence 9999999999999872 4566789999986543 334689999986
No 17
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.80 E-value=8.3e-19 Score=165.07 Aligned_cols=116 Identities=27% Similarity=0.457 Sum_probs=99.9
Q ss_pred EEEEEEEEeeC---CCCCCCCCCCCeEEEEEECCeEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCC
Q 002002 8 KLIVEVCNAKN---LMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKTG 84 (983)
Q Consensus 8 ~L~V~v~~a~~---L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~ 84 (983)
.|+|+|++|++ |..+|..|++||||++++++++.||+++++++||+|||+|.|.+.++ ...|.|+|||++..+
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~----~~~l~v~V~d~d~~~ 76 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDP----CTVLTVGVFDNSQSH 76 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCC----CCEEEEEEEECCCcc
Confidence 38999999999 88999999999999999999999999999999999999999999775 468999999987752
Q ss_pred -----CCCCccEEEEEECccceecCCeeeEEEEceecCCcc-eeeeEEEE
Q 002002 85 -----KRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFS-QIKGEIGL 128 (983)
Q Consensus 85 -----~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~s-~~~G~l~l 128 (983)
++|++||++.++++.+. .+.....||+|....... +..|+|++
T Consensus 77 ~~~~~~~dd~lG~~~i~l~~l~-~~~~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 77 WKEAVQPDVLIGKVRIRLSTLE-DDRVYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred ccccCCCCceEEEEEEEHHHcc-CCCEEeeEEEeEeCCCCCccCCcEEEe
Confidence 37999999999999987 567788999998664322 34577764
No 18
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.79 E-value=1.3e-18 Score=171.95 Aligned_cols=125 Identities=23% Similarity=0.252 Sum_probs=108.4
Q ss_pred cEEEEEEEceeccccccccC---------------------------CCCCCCCCcEEEEEECCE-EEEeeeecCCCCCe
Q 002002 587 IGLLEVGIRGATNLLPVKTK---------------------------DGTRGTTDAYVVAKYGPK-WVRTRTILDRFNPR 638 (983)
Q Consensus 587 ~g~L~v~v~~a~~L~~~~~~---------------------------d~~~g~sDpy~~~~~~~~-~~rT~~~~~t~nP~ 638 (983)
-|.|.|+|++|++|+.||.. .. .|++||||++.+++. ..||++++++.||+
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~ 84 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVG-KITSDPYATVDLAGARVARTRVIENSENPV 84 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCC-CCCcCeEEEEEECCeEeeEEEEeCCCCCCc
Confidence 48999999999999988621 23 688999999999975 46999999999999
Q ss_pred eceEEEEEEecCCCEEEEEEEeCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeeecCCCCCccceEEEEEE
Q 002002 639 WNEQYTWDVYDPCTVLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLPGGAKKMGEIEIAV 718 (983)
Q Consensus 639 Wne~~~~~v~~~~~~l~i~v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~ 718 (983)
|||.|.|.+.++.+.|.|.|||++..+ +++||++.|+++++..+.....||+|.....++.+..|.|++.+
T Consensus 85 WnE~F~~~~~~~~~~l~~~V~d~d~~~---------~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~ 155 (158)
T cd04015 85 WNESFHIYCAHYASHVEFTVKDNDVVG---------AQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSL 155 (158)
T ss_pred cceEEEEEccCCCCEEEEEEEeCCCcC---------CcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEE
Confidence 999999999888889999999999876 35999999999999988888999999876555555578999999
Q ss_pred EEE
Q 002002 719 RFT 721 (983)
Q Consensus 719 ~f~ 721 (983)
+|+
T Consensus 156 ~f~ 158 (158)
T cd04015 156 QFT 158 (158)
T ss_pred EEC
Confidence 984
No 19
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.79 E-value=1.7e-18 Score=164.02 Aligned_cols=118 Identities=33% Similarity=0.467 Sum_probs=105.3
Q ss_pred EEEEEceeccccccccCCCCCCCCCcEEEEEECC-EEEEeeeecCCCCCeeceEEEEEEecCCCEEEEEEEeCCCCCCcC
Q 002002 590 LEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP-KWVRTRTILDRFNPRWNEQYTWDVYDPCTVLTIGVFDNGRYKRDE 668 (983)
Q Consensus 590 L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~-~~~rT~~~~~t~nP~Wne~~~~~v~~~~~~l~i~v~D~d~~~~~~ 668 (983)
|+|+|++|+||+.+ |. .|++||||++++++ ...+|+++.+++||.|||.|.|.+.++...|.|+|||++..+
T Consensus 2 L~v~v~~a~~L~~~---d~-~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~--- 74 (121)
T cd04042 2 LDIHLKEGRNLAAR---DR-GGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGL--- 74 (121)
T ss_pred eEEEEEEeeCCCCc---CC-CCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCCCCeEEEEEEeCCCCC---
Confidence 78999999999765 55 78999999999987 678999999999999999999999888889999999999987
Q ss_pred CCCCCCCceeEEEEEEcccccCCCeEEEEEEeeecCCCCCccceEEEEEEEEE
Q 002002 669 AGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLPGGAKKMGEIEIAVRFT 721 (983)
Q Consensus 669 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~f~ 721 (983)
+|++||++.+++.++..+.....|++|.... +.+..|+|++.++|+
T Consensus 75 -----~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~~--~~~~~G~l~l~~~~~ 120 (121)
T cd04042 75 -----TDDFMGSAFVDLSTLELNKPTEVKLKLEDPN--SDEDLGYISLVVTLT 120 (121)
T ss_pred -----CCcceEEEEEEHHHcCCCCCeEEEEECCCCC--CccCceEEEEEEEEC
Confidence 6889999999999999888889999997643 235689999999985
No 20
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.78 E-value=2.8e-18 Score=161.89 Aligned_cols=119 Identities=18% Similarity=0.342 Sum_probs=103.0
Q ss_pred EEEEEceeccccccccCCCCCCCCCcEEEEEECCE-EEEeeeecCCCCCeeceEEEEEEecCCCEEEEEEEeCCCCCCcC
Q 002002 590 LEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPK-WVRTRTILDRFNPRWNEQYTWDVYDPCTVLTIGVFDNGRYKRDE 668 (983)
Q Consensus 590 L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~~-~~rT~~~~~t~nP~Wne~~~~~v~~~~~~l~i~v~D~d~~~~~~ 668 (983)
|.|+|++|+||++++ +. .|.+||||.+++++. ..+|+++++|+||.|||+|.|.+.+....|.|.|||++..+
T Consensus 2 l~v~v~~a~~L~~~~--~~-~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~--- 75 (121)
T cd08401 2 LKIKIGEAKNLPPRS--GP-NKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLR--- 75 (121)
T ss_pred eEEEEEEccCCCCCC--CC-CCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCCCEEEEEEEECCCCC---
Confidence 679999999998763 23 678999999999864 67999999999999999999999876679999999999987
Q ss_pred CCCCCCCceeEEEEEEcccccCCCeEEEEEEeeecCCCCCccceEEEEEEEE
Q 002002 669 AGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLPGGAKKMGEIEIAVRF 720 (983)
Q Consensus 669 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~f 720 (983)
+|++||++.++++++..+.....||+|......+ +..|+|+++++|
T Consensus 76 -----~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~-~~~G~i~l~~~~ 121 (121)
T cd08401 76 -----RDSVIGKVAIKKEDLHKYYGKDTWFPLQPVDADS-EVQGKVHLELRL 121 (121)
T ss_pred -----CCceEEEEEEEHHHccCCCCcEeeEEEEccCCCC-cccEEEEEEEEC
Confidence 7889999999999998888789999998654433 347999999875
No 21
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.77 E-value=5.7e-18 Score=160.50 Aligned_cols=119 Identities=27% Similarity=0.466 Sum_probs=105.5
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCeEEEEEECC-eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCCCC
Q 002002 8 KLIVEVCNAKNLMPKDGQGTASAYVIVDFDG-QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKTGKR 86 (983)
Q Consensus 8 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~~~ 86 (983)
+|.|+|++|++|+.+|..|.+||||++.+++ ..++|+++.+++||.|||+|.|.+... ...|.|+|||.+..+ +
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~----~~~l~~~v~D~d~~~-~ 75 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDV----TQPLYIKVFDYDRGL-T 75 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCC----CCeEEEEEEeCCCCC-C
Confidence 4899999999999999999999999999988 788999999999999999999998654 578999999988876 8
Q ss_pred CCccEEEEEECccceecCCeeeEEEEceecCCcceeeeEEEEEEEEe
Q 002002 87 STFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQIKGEIGLKVYYI 133 (983)
Q Consensus 87 d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~s~~~G~l~l~i~~~ 133 (983)
+++||++.+++.++. .+.....|++|.+.+. .+..|+|++.+.+.
T Consensus 76 ~~~iG~~~~~l~~l~-~~~~~~~~~~L~~~~~-~~~~G~l~l~~~~~ 120 (121)
T cd04042 76 DDFMGSAFVDLSTLE-LNKPTEVKLKLEDPNS-DEDLGYISLVVTLT 120 (121)
T ss_pred CcceEEEEEEHHHcC-CCCCeEEEEECCCCCC-ccCceEEEEEEEEC
Confidence 999999999999988 5567888999987654 24679999999875
No 22
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.77 E-value=4.7e-18 Score=160.36 Aligned_cols=116 Identities=50% Similarity=0.907 Sum_probs=103.5
Q ss_pred EEEEEEEEeecCCCCCCCCcEEEEEEcCeeeeeeec--CC-CccceEEEEeecCCCCCeEEEEEEcCCcCCccccCCcee
Q 002002 274 FLYVRVLKAKRAGNVSNGSLYAKLVIGTHSIKTKSQ--AD-KDWDQVFAFDKEGLNSTSLEVSVWSEEKKENEECTENCL 350 (983)
Q Consensus 274 ~L~V~v~~a~~L~~~~~~dPyv~v~~~~~~~kTk~~--~~-P~Wne~f~f~~~~~~~~~l~v~V~d~d~~~~d~~~d~~l 350 (983)
||.|+|++|++|+.. .+||||++.+++++.+|+++ +. |+|||+|.|.+..+....|.++|||++. .++++|
T Consensus 1 ~L~V~Vi~a~~L~~~-~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~-----~~~~~l 74 (121)
T cd08378 1 YLYVRVVKARGLPAN-SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDK-----AKDDFL 74 (121)
T ss_pred CEEEEEEEecCCCcc-cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCC-----CcCcee
Confidence 689999999999866 89999999999999999998 77 9999999999988778899999999873 389999
Q ss_pred EEEEEeccccCCCCCCCCCCCCceEEcccCC--CCCceEEEEEEecc
Q 002002 351 GTVLFDLQEVPKRVPPDSPLAPQWYSLESEK--LPGNDVMLAVWIGT 395 (983)
Q Consensus 351 G~~~i~l~~l~~~~~~~~~l~~~w~~L~~~~--~~~g~i~l~~~~g~ 395 (983)
|.+.++|+++..+.+.+....++||.|.+.. +.+|+|++++|+|+
T Consensus 75 G~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~~~~ 121 (121)
T cd08378 75 GGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVWFGT 121 (121)
T ss_pred eeEEEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEEecC
Confidence 9999999999877666666678999998873 68899999999985
No 23
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.77 E-value=4.9e-18 Score=160.26 Aligned_cols=117 Identities=25% Similarity=0.399 Sum_probs=102.2
Q ss_pred EEEEEEEeeCCCCCC-CCCCCCeEEEEEECC-eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCCCC
Q 002002 9 LIVEVCNAKNLMPKD-GQGTASAYVIVDFDG-QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKTGKR 86 (983)
Q Consensus 9 L~V~v~~a~~L~~~d-~~g~~dPyv~v~~~~-~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~~~ 86 (983)
|.|+|.+|+||++++ ..|.+||||.|.+++ ..++|+++++|+||.|||+|.|.+... ...|.|.|||.+.++ +
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~----~~~l~~~v~d~~~~~-~ 76 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRT----FRHLSFYIYDRDVLR-R 76 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCC----CCEEEEEEEECCCCC-C
Confidence 789999999999974 467899999999987 468999999999999999999999754 478999999988886 8
Q ss_pred CCccEEEEEECccceecCCeeeEEEEceecCCcceeeeEEEEEEE
Q 002002 87 STFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQIKGEIGLKVY 131 (983)
Q Consensus 87 d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~s~~~G~l~l~i~ 131 (983)
+++||++.++++++. .+...+.||+|++....++..|+|++.+.
T Consensus 77 ~~~iG~~~i~l~~l~-~~~~~~~w~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd08401 77 DSVIGKVAIKKEDLH-KYYGKDTWFPLQPVDADSEVQGKVHLELR 120 (121)
T ss_pred CceEEEEEEEHHHcc-CCCCcEeeEEEEccCCCCcccEEEEEEEE
Confidence 999999999999987 45667899999987655567899999875
No 24
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.76 E-value=5.2e-18 Score=157.00 Aligned_cols=100 Identities=26% Similarity=0.416 Sum_probs=89.9
Q ss_pred cCEEEEEEEEeecCCCCCCCCcEEEEEEcCeeeeeeec-CC-CccceEEEEeecCCCCCeEEEEEEcCCcCCccccCCce
Q 002002 272 MPFLYVRVLKAKRAGNVSNGSLYAKLVIGTHSIKTKSQ-AD-KDWDQVFAFDKEGLNSTSLEVSVWSEEKKENEECTENC 349 (983)
Q Consensus 272 ~~~L~V~v~~a~~L~~~~~~dPyv~v~~~~~~~kTk~~-~~-P~Wne~f~f~~~~~~~~~l~v~V~d~d~~~~d~~~d~~ 349 (983)
|++|+|+|++||+|...+..||||++++|+++.+|++. +. |.|||.|.|.+.+. ...|.|+|||+| +..||+
T Consensus 1 m~~L~V~Vv~Ar~L~~~~~~dPYV~Ik~g~~k~kT~v~~~~nP~WnE~F~F~~~~~-~~~L~v~V~dkd-----~~~DD~ 74 (127)
T cd08394 1 MSLLCVLVKKAKLDGAPDKFNTYVTLKVQNVKSTTIAVRGSQPCWEQDFMFEINRL-DLGLVIELWNKG-----LIWDTL 74 (127)
T ss_pred CceEEEEEEEeeCCCCCCCCCCeEEEEECCEEeEeeECCCCCCceeeEEEEEEcCC-CCEEEEEEEeCC-----CcCCCc
Confidence 67999999999999877888999999999999999999 77 99999999999887 445999999986 569999
Q ss_pred eEEEEEeccccCCCCCCCCCCCCceEEcccC
Q 002002 350 LGTVLFDLQEVPKRVPPDSPLAPQWYSLESE 380 (983)
Q Consensus 350 lG~~~i~l~~l~~~~~~~~~l~~~w~~L~~~ 380 (983)
||++.|+|+++..+ +.+++++||+|+..
T Consensus 75 lG~v~i~L~~v~~~---~~~~~~~Wy~L~~~ 102 (127)
T cd08394 75 VGTVWIPLSTIRQS---NEEGPGEWLTLDSE 102 (127)
T ss_pred eEEEEEEhHHcccC---CCCCCCccEecChH
Confidence 99999999999876 45788999999854
No 25
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.75 E-value=9.7e-18 Score=163.80 Aligned_cols=123 Identities=21% Similarity=0.330 Sum_probs=105.2
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCeEEEEEECCeEEeeeCcCC-CCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCCCC
Q 002002 8 KLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFR-DLNPQWDERLEFLVHDAESMPTEILEINLYNDKKTGKR 86 (983)
Q Consensus 8 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~-t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~~~ 86 (983)
.|.|+|++|++|+++|..|.+||||++.+++++++|+++.+ ++||.|||+|.|.+..+. ...|.|.||+.+..+ +
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~---~~~l~v~V~d~~~~~-~ 76 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPF---EDHLILSVEDRVGPN-K 76 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCcc---CCeEEEEEEEecCCC-C
Confidence 38999999999999999999999999999999999999977 699999999999997642 468999999877765 7
Q ss_pred CCccEEEEEECcccee---cCCeeeEEEEceecCC------cceeeeEEEEEEEEec
Q 002002 87 STFLGKVKIAGSTFAK---VGSESSVYYPLEKRSV------FSQIKGEIGLKVYYID 134 (983)
Q Consensus 87 d~~lG~~~i~l~~l~~---~~~~~~~w~~L~~~~~------~s~~~G~l~l~i~~~~ 134 (983)
|++||++.++++.+.. .+....+||+|.+.++ ..+..|+|+|++.+..
T Consensus 77 dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~ 133 (150)
T cd04019 77 DEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDG 133 (150)
T ss_pred CCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecC
Confidence 8999999999999863 2345689999998753 1246799999999874
No 26
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.75 E-value=1.3e-17 Score=159.16 Aligned_cols=120 Identities=22% Similarity=0.291 Sum_probs=103.0
Q ss_pred EEEEEceeccccccccCCCCCCCCCcEEEEEECC--EEEEeeeecCCCCCeeceEEEEEEecCCCEEEEEEEeCCCCCCc
Q 002002 590 LEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP--KWVRTRTILDRFNPRWNEQYTWDVYDPCTVLTIGVFDNGRYKRD 667 (983)
Q Consensus 590 L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~--~~~rT~~~~~t~nP~Wne~~~~~v~~~~~~l~i~v~D~d~~~~~ 667 (983)
|.|+|++|+||+. . .|++||||++.+++ ...||+++++++||.|||.|.|.+......|.|+|||++..+
T Consensus 1 l~v~v~~A~~L~~-----~-~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~-- 72 (126)
T cd08678 1 LLVKNIKANGLSE-----A-AGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKS-- 72 (126)
T ss_pred CEEEEEEecCCCC-----C-CCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCCCC--
Confidence 5789999999964 3 78999999999974 678999999999999999999999765679999999999987
Q ss_pred CCCCCCCCceeEEEEEEcccccCCCeEEEEEEeeecCCCCCccceEEEEEEEEEec
Q 002002 668 EAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLPGGAKKMGEIEIAVRFTCS 723 (983)
Q Consensus 668 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~f~~~ 723 (983)
+|++||++.+++.++..+.....||+|......+.+..|+|++++.|...
T Consensus 73 ------~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~ 122 (126)
T cd08678 73 ------DSKFLGLAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFMEP 122 (126)
T ss_pred ------CCceEEEEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEecc
Confidence 68899999999999998777789999985533234557999999999743
No 27
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.75 E-value=2e-17 Score=157.52 Aligned_cols=119 Identities=24% Similarity=0.406 Sum_probs=101.5
Q ss_pred cEEEEEEEceeccccccccCCCCCCCCCcEEEEEECC-EEEEeeeecCCCCCeeceEEEEEEecCC-CEEEEEEEeCCCC
Q 002002 587 IGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP-KWVRTRTILDRFNPRWNEQYTWDVYDPC-TVLTIGVFDNGRY 664 (983)
Q Consensus 587 ~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~-~~~rT~~~~~t~nP~Wne~~~~~v~~~~-~~l~i~v~D~d~~ 664 (983)
...|+|+|++|+||++ .+.+||||.+.+++ +..||++ ++++||.|||.|.|.+..+. ..++|.|||++..
T Consensus 3 ~~~L~V~Vi~A~~L~~-------~~~~DPYv~v~l~~~~~~kT~v-~~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~ 74 (126)
T cd08400 3 VRSLQLNVLEAHKLPV-------KHVPHPYCVISLNEVKVARTKV-REGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKR 74 (126)
T ss_pred eeEEEEEEEEeeCCCC-------CCCCCeeEEEEECCEeEEEeec-CCCCCCccCCEEEEecCCCCcCEEEEEEEECCCC
Confidence 3479999999999964 34689999999987 4578987 56899999999999976554 5799999999988
Q ss_pred CCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeeecCCCCCccceEEEEEEEEE
Q 002002 665 KRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLPGGAKKMGEIEIAVRFT 721 (983)
Q Consensus 665 ~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~f~ 721 (983)
+ +|++||++.|+|.++..+.....||+|......+.+..|+|+|.++|.
T Consensus 75 ~--------~d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~ 123 (126)
T cd08400 75 S--------KDSEIAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYS 123 (126)
T ss_pred C--------CCCeEEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEE
Confidence 7 788999999999999999888999999876544455679999999996
No 28
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.75 E-value=7.4e-18 Score=157.20 Aligned_cols=107 Identities=21% Similarity=0.335 Sum_probs=91.3
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCeEEEEEECC-------eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeC
Q 002002 8 KLIVEVCNAKNLMPKDGQGTASAYVIVDFDG-------QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYND 80 (983)
Q Consensus 8 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-------~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~ 80 (983)
+|.|+|++|++|+.++ .|.+||||+|++.+ ++++|+++.+++||+|||+|.|.+.....+....|.|.|||+
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~ 79 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY 79 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence 5899999999999988 49999999999832 467899999999999999999999864344567899999987
Q ss_pred CCCCCCCCccEEEEEECccceecCCeeeEEEEceecC
Q 002002 81 KKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRS 117 (983)
Q Consensus 81 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~ 117 (983)
+..+ ++++||++.+++.++. .+.....|++|+++.
T Consensus 80 d~~~-~dd~IG~~~l~l~~~~-~~~~~~~w~~L~~~~ 114 (120)
T cd08395 80 CFAR-DDRLVGVTVLQLRDIA-QAGSCACWLPLGRRI 114 (120)
T ss_pred cccC-CCCEEEEEEEEHHHCc-CCCcEEEEEECcCcc
Confidence 7554 7999999999999998 445688999998764
No 29
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.75 E-value=2.1e-17 Score=155.45 Aligned_cols=115 Identities=25% Similarity=0.473 Sum_probs=103.1
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCeEEEEEECCeEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCCCCC
Q 002002 8 KLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKTGKRS 87 (983)
Q Consensus 8 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~~~d 87 (983)
.|+|+|++|++|+.++..|.+||||++.+++++++|+++++++||.|||+|.|.+.... ...|.|+|||.+..+ ++
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~---~~~l~v~v~d~~~~~-~~ 76 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQ---SQILEIEVWDKDTGK-KD 76 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCC---CCEEEEEEEECCCCC-CC
Confidence 47899999999999998899999999999999999999999999999999999987642 578999999988775 89
Q ss_pred CccEEEEEECccceecCCeeeEEEEceecCCcceeeeEEEEEEEEe
Q 002002 88 TFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQIKGEIGLKVYYI 133 (983)
Q Consensus 88 ~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~s~~~G~l~l~i~~~ 133 (983)
++||++.++++++. .+.....|++|++. .|+|++.+.|+
T Consensus 77 ~~iG~~~~~l~~l~-~~~~~~~w~~L~~~------~G~~~~~~~~~ 115 (116)
T cd08376 77 EFIGRCEIDLSALP-REQTHSLELELEDG------EGSLLLLLTLT 115 (116)
T ss_pred CeEEEEEEeHHHCC-CCCceEEEEEccCC------CcEEEEEEEec
Confidence 99999999999987 55678899999864 49999998875
No 30
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.75 E-value=2e-17 Score=156.40 Aligned_cols=118 Identities=26% Similarity=0.434 Sum_probs=103.6
Q ss_pred EEEEEEEceeccccccccCCCCCCCCCcEEEEEECCEEEEeeeecCCCCCeeceEEEEEEecCCCEEEEEEEeCCCCCCc
Q 002002 588 GLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILDRFNPRWNEQYTWDVYDPCTVLTIGVFDNGRYKRD 667 (983)
Q Consensus 588 g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~~~~rT~~~~~t~nP~Wne~~~~~v~~~~~~l~i~v~D~d~~~~~ 667 (983)
|.|+|+|++|+||+.+ +. .+.+||||++++++...+|++++++.||.|||+|.|.+.+....|.|+|||++..+
T Consensus 1 g~l~v~v~~a~~L~~~---~~-~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~-- 74 (119)
T cd08377 1 GFLQVKVIRASGLAAA---DI-GGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDK-- 74 (119)
T ss_pred CEEEEEEEeeeCCCCC---CC-CCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCcCCEEEEEEEECCCCC--
Confidence 7899999999999765 55 78899999999999889999999999999999999999877789999999999876
Q ss_pred CCCCCCCCceeEEEEEEcccccCCCeEEEEEEeeecCCCCCccceEEEEEEEE
Q 002002 668 EAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLPGGAKKMGEIEIAVRF 720 (983)
Q Consensus 668 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~f 720 (983)
+|++||++.+++.++..+. ..||+|......+ +..|+|.+++.|
T Consensus 75 ------~~~~iG~~~~~l~~~~~~~--~~~~~l~~~~~~~-~~~G~i~l~~~~ 118 (119)
T cd08377 75 ------KPEFLGKVAIPLLSIKNGE--RKWYALKDKKLRT-RAKGSILLEMDV 118 (119)
T ss_pred ------CCceeeEEEEEHHHCCCCC--ceEEECcccCCCC-ceeeEEEEEEEe
Confidence 6789999999999998776 6899998653333 457999999876
No 31
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.75 E-value=5.1e-18 Score=160.94 Aligned_cols=92 Identities=28% Similarity=0.551 Sum_probs=87.9
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEECCeEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCC
Q 002002 5 CNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKTG 84 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~ 84 (983)
..+.|+|+|++|.+|..+|..+++||||++.+++|+.+|+++++++||+|||.|+|.+.++ ...|++.|||.|.++
T Consensus 4 ~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~----~~~lkv~VyD~D~fs 79 (168)
T KOG1030|consen 4 LVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDP----NTPLKVTVYDKDTFS 79 (168)
T ss_pred cceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCC----CceEEEEEEeCCCCC
Confidence 3578999999999999999889999999999999999999999999999999999999998 789999999999887
Q ss_pred CCCCccEEEEEECccce
Q 002002 85 KRSTFLGKVKIAGSTFA 101 (983)
Q Consensus 85 ~~d~~lG~~~i~l~~l~ 101 (983)
+|||||.+.|++..+.
T Consensus 80 -~dD~mG~A~I~l~p~~ 95 (168)
T KOG1030|consen 80 -SDDFMGEATIPLKPLL 95 (168)
T ss_pred -cccccceeeeccHHHH
Confidence 9999999999999988
No 32
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.75 E-value=1.6e-17 Score=158.79 Aligned_cols=121 Identities=30% Similarity=0.481 Sum_probs=102.5
Q ss_pred EEEEEEceeccccccccCCCCCCCCCcEEEEEECCEEEEeeeecCCCCCeeceEEEEEEecCC----CEEEEEEEeCCCC
Q 002002 589 LLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILDRFNPRWNEQYTWDVYDPC----TVLTIGVFDNGRY 664 (983)
Q Consensus 589 ~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~~~~rT~~~~~t~nP~Wne~~~~~v~~~~----~~l~i~v~D~d~~ 664 (983)
.|.|+|++|++|++. |. .|.+||||++.+++...||+++.+++||.|||.|.|.+.++. ..|.|+|||++..
T Consensus 1 ~L~V~vi~A~~L~~~---d~-~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~ 76 (127)
T cd04022 1 KLVVEVVDAQDLMPK---DG-QGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRS 76 (127)
T ss_pred CeEEEEEEeeCCCCC---CC-CCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCC
Confidence 378999999999765 55 788999999999999999999999999999999999997643 4799999999876
Q ss_pred CCcCCCCCCCCceeEEEEEEccccc-CCCeEEEEEEeeecCCCCCccceEEEEEEEEE
Q 002002 665 KRDEAGKPGKDVRVGKIRVRLSTLD-TNRVYLNSYSLTVLLPGGAKKMGEIEIAVRFT 721 (983)
Q Consensus 665 ~~~~~~~~~~d~~lG~~~i~l~~l~-~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~f~ 721 (983)
+ ..|++||++.++++++. .+.....||+|......+ +.+|+|+|++.||
T Consensus 77 ~-------~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~-~~~G~l~l~~~~~ 126 (127)
T cd04022 77 G-------RRRSFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFS-RVRGEIGLKVYIT 126 (127)
T ss_pred c-------CCCCeeeEEEEcHHHcCCCCCccceEeEeeeCCCCC-CccEEEEEEEEEc
Confidence 4 14779999999999987 566678999998653333 4579999999886
No 33
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.74 E-value=2.5e-17 Score=158.57 Aligned_cols=119 Identities=27% Similarity=0.428 Sum_probs=100.7
Q ss_pred cCCcEEEEEEEceeccccccccCCCCCCCCCcEEEEEECCEEEEeeeecCCCCCeeceEEEEEEecCC-CEEEEEEEeCC
Q 002002 584 KSPIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILDRFNPRWNEQYTWDVYDPC-TVLTIGVFDNG 662 (983)
Q Consensus 584 ~~~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~~~~rT~~~~~t~nP~Wne~~~~~v~~~~-~~l~i~v~D~d 662 (983)
...+|.|.|+|++|+||+.+ |. .|.+||||++.+++...||+++++++||.|||.|.|.+.++. ..|.|+|||++
T Consensus 11 ~~~~G~L~V~Vi~A~~L~~~---d~-~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d 86 (136)
T cd08375 11 ASGIGRLMVVIVEGRDLKPC---NS-NGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRD 86 (136)
T ss_pred CCCcEEEEEEEEEeeCCCCC---CC-CCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECC
Confidence 46789999999999999765 55 789999999999999999999999999999999999998754 58999999999
Q ss_pred CCCCcCCCCCCCCceeEEEEEEcccccC-----CCeEEEEEEeeecCCCCCccceEEEEEEEE
Q 002002 663 RYKRDEAGKPGKDVRVGKIRVRLSTLDT-----NRVYLNSYSLTVLLPGGAKKMGEIEIAVRF 720 (983)
Q Consensus 663 ~~~~~~~~~~~~d~~lG~~~i~l~~l~~-----~~~~~~~~~L~~~~~~g~~~~G~l~l~~~f 720 (983)
..+ +|++||++.++|.++.. ...+..|.+| ++ +..|+|+|++.|
T Consensus 87 ~~~--------~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~-----~~-~~~g~i~l~~~~ 135 (136)
T cd08375 87 FFS--------PDDFLGRTEIRVADILKETKESKGPITKRLLL-----HE-VPTGEVVVKLDL 135 (136)
T ss_pred CCC--------CCCeeEEEEEEHHHhccccccCCCcEEEEecc-----cc-ccceeEEEEEEe
Confidence 887 78899999999999875 2234444444 23 346999999876
No 34
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.74 E-value=1.7e-17 Score=160.15 Aligned_cols=121 Identities=28% Similarity=0.429 Sum_probs=104.2
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCeEEEEEECCe-------EEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeC
Q 002002 8 KLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQ-------RRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYND 80 (983)
Q Consensus 8 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~-------~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~ 80 (983)
.|.|+|++|++|+.+|..|.+||||++.+.+. .++|+++++++||.|||+|.|.+... ...|.|+|||.
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~----~~~l~~~v~d~ 76 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPR----EHRLLFEVFDE 76 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCC----CCEEEEEEEEC
Confidence 38999999999999998999999999999764 57999999999999999999998654 46799999988
Q ss_pred CCCCCCCCccEEEEEECccceecC-----CeeeEEEEceecCCcceeeeEEEEEEEEe
Q 002002 81 KKTGKRSTFLGKVKIAGSTFAKVG-----SESSVYYPLEKRSVFSQIKGEIGLKVYYI 133 (983)
Q Consensus 81 ~~~~~~d~~lG~~~i~l~~l~~~~-----~~~~~w~~L~~~~~~s~~~G~l~l~i~~~ 133 (983)
+..+ ++++||++.+++.++.... .....||+|+++...++.+|+|++++.|.
T Consensus 77 ~~~~-~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~~ 133 (133)
T cd04033 77 NRLT-RDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAYL 133 (133)
T ss_pred CCCC-CCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEeeC
Confidence 8776 8999999999999987332 23569999998766667899999999873
No 35
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.74 E-value=1.6e-17 Score=156.72 Aligned_cols=114 Identities=25% Similarity=0.439 Sum_probs=99.5
Q ss_pred EEEEEEEeeCCCCCCCCCCCCeEEEEEECCeEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCCCCCC
Q 002002 9 LIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKTGKRST 88 (983)
Q Consensus 9 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~~~d~ 88 (983)
|.|+|++|+||+.+ .+||||++.+++++.+|+++++++||.|||+|.|.+..+ ....|.|.|||++.. +++
T Consensus 2 L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~---~~~~L~~~v~d~d~~--~~~ 72 (121)
T cd08378 2 LYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRL---QGSTLEVSVWDKDKA--KDD 72 (121)
T ss_pred EEEEEEEecCCCcc----cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCC---cCCEEEEEEEeCCCC--cCc
Confidence 89999999999987 789999999999999999999999999999999998653 268899999988765 789
Q ss_pred ccEEEEEECccceec----CCeeeEEEEceecCCcceeeeEEEEEEEE
Q 002002 89 FLGKVKIAGSTFAKV----GSESSVYYPLEKRSVFSQIKGEIGLKVYY 132 (983)
Q Consensus 89 ~lG~~~i~l~~l~~~----~~~~~~w~~L~~~~~~s~~~G~l~l~i~~ 132 (983)
+||++.++++.+... +.....||+|+.... ++.+|+|+|.+.|
T Consensus 73 ~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~-~~~~G~i~l~~~~ 119 (121)
T cd08378 73 FLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKG-GRVGGELMLAVWF 119 (121)
T ss_pred eeeeEEEEhHhCcCCCCCCCCCCcceEEccCCCC-CccceEEEEEEEe
Confidence 999999999998632 233579999998865 6788999999976
No 36
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.74 E-value=2.6e-17 Score=157.08 Aligned_cols=119 Identities=23% Similarity=0.457 Sum_probs=102.5
Q ss_pred EEEEEEEeeCCCCCCCCCCCCeEEEEEECC--eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCCCC
Q 002002 9 LIVEVCNAKNLMPKDGQGTASAYVIVDFDG--QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKTGKR 86 (983)
Q Consensus 9 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~--~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~~~ 86 (983)
|.|+|++|+||+. ..|.+||||++++++ ++++|+++++++||.|||+|.|.+... ...|.|+|||.+..+ +
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~----~~~l~~~v~d~~~~~-~ 73 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPN----SKELLFEVYDNGKKS-D 73 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCC----CCEEEEEEEECCCCC-C
Confidence 6899999999987 678999999999974 678999999999999999999998643 578999999988876 8
Q ss_pred CCccEEEEEECccceecCCeeeEEEEceecCC-cceeeeEEEEEEEEecC
Q 002002 87 STFLGKVKIAGSTFAKVGSESSVYYPLEKRSV-FSQIKGEIGLKVYYIDE 135 (983)
Q Consensus 87 d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~-~s~~~G~l~l~i~~~~~ 135 (983)
++|||++.+++..+. .+.....||+|.++.. .....|+|.+++.|.+.
T Consensus 74 ~~~lG~~~i~l~~l~-~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~ 122 (126)
T cd08678 74 SKFLGLAIVPFDELR-KNPSGRQIFPLQGRPYEGDSVSGSITVEFLFMEP 122 (126)
T ss_pred CceEEEEEEeHHHhc-cCCceeEEEEecCCCCCCCCcceEEEEEEEEecc
Confidence 999999999999988 4455678999987643 23578999999999854
No 37
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.74 E-value=3.2e-17 Score=154.26 Aligned_cols=114 Identities=25% Similarity=0.450 Sum_probs=101.9
Q ss_pred EEEEEEceeccccccccCCCCCCCCCcEEEEEECCEEEEeeeecCCCCCeeceEEEEEEecC-CCEEEEEEEeCCCCCCc
Q 002002 589 LLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILDRFNPRWNEQYTWDVYDP-CTVLTIGVFDNGRYKRD 667 (983)
Q Consensus 589 ~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~~~~rT~~~~~t~nP~Wne~~~~~v~~~-~~~l~i~v~D~d~~~~~ 667 (983)
+|+|+|++|+||+.+ |. .|.+||||.+++++...+|+++.+|+||.|||.|.|.+.++ ...|.|+|||++..+
T Consensus 1 ~~~V~v~~a~~L~~~---~~-~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~-- 74 (116)
T cd08376 1 VVTIVLVEGKNLPPM---DD-NGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGK-- 74 (116)
T ss_pred CEEEEEEEEECCCCC---CC-CCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCC--
Confidence 378999999999765 55 78999999999999999999999999999999999999876 579999999999887
Q ss_pred CCCCCCCCceeEEEEEEcccccCCCeEEEEEEeeecCCCCCccceEEEEEEEEE
Q 002002 668 EAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLPGGAKKMGEIEIAVRFT 721 (983)
Q Consensus 668 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~f~ 721 (983)
+|++||++.++|+++..+.....||+|... .|+|++.+.|+
T Consensus 75 ------~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~-------~G~~~~~~~~~ 115 (116)
T cd08376 75 ------KDEFIGRCEIDLSALPREQTHSLELELEDG-------EGSLLLLLTLT 115 (116)
T ss_pred ------CCCeEEEEEEeHHHCCCCCceEEEEEccCC-------CcEEEEEEEec
Confidence 788999999999999988888999998732 49999998875
No 38
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.74 E-value=1.9e-17 Score=156.30 Aligned_cols=117 Identities=28% Similarity=0.547 Sum_probs=101.1
Q ss_pred cEEEEEEEEeeCCCCCCCCCCCCeEEEEEECCeEEeeeCcCC-CCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCCC
Q 002002 7 RKLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFR-DLNPQWDERLEFLVHDAESMPTEILEINLYNDKKTGK 85 (983)
Q Consensus 7 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~-t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~~ 85 (983)
+.|.|+|++|++|+..+..|.+||||++++++++++|+++.+ ++||.|||+|.|.+..+. ...|.|+|||.+..
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~---~~~l~i~v~d~~~~-- 75 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDK---KPILKVAVFDDDKR-- 75 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCC---CCEEEEEEEeCCCC--
Confidence 479999999999999999999999999999999999998764 799999999999997642 57899999987665
Q ss_pred CCCccEEEEEECccceecCCeeeEEEEceecCCcceeeeEEEEEEEE
Q 002002 86 RSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQIKGEIGLKVYY 132 (983)
Q Consensus 86 ~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~s~~~G~l~l~i~~ 132 (983)
.+++||++.+++.++.. +.....||+|.+.+ +..|+|+++++|
T Consensus 76 ~~~~iG~~~~~l~~~~~-~~~~~~w~~L~~~~---~~~G~i~l~l~f 118 (118)
T cd08681 76 KPDLIGDTEVDLSPALK-EGEFDDWYELTLKG---RYAGEVYLELTF 118 (118)
T ss_pred CCcceEEEEEecHHHhh-cCCCCCcEEeccCC---cEeeEEEEEEEC
Confidence 48999999999999873 44578999998654 457999999875
No 39
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.74 E-value=2.9e-17 Score=155.36 Aligned_cols=118 Identities=24% Similarity=0.402 Sum_probs=102.2
Q ss_pred EEEEEEEeeCCCCCCCCCCCCeEEEEEECCe-EEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCCCCC
Q 002002 9 LIVEVCNAKNLMPKDGQGTASAYVIVDFDGQ-RRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKTGKRS 87 (983)
Q Consensus 9 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~-~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~~~d 87 (983)
|.|+|++|++|.++|..|.+||||++.+++. .++|+++++++||.|||.|.|.+... ...|.|.|||.+..+ +|
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~----~~~l~v~v~d~~~~~-~d 76 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPG----FHTVSFYVLDEDTLS-RD 76 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCC----CCEEEEEEEECCCCC-CC
Confidence 8999999999999999999999999999874 57999999999999999999998654 578999999888876 89
Q ss_pred CccEEEEEECccceecCCeeeEEEEceecCCcceeeeEEEEEEE
Q 002002 88 TFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQIKGEIGLKVY 131 (983)
Q Consensus 88 ~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~s~~~G~l~l~i~ 131 (983)
++||++.++++.+...+...+.|++|++........|+|++.+.
T Consensus 77 ~~iG~~~~~~~~~~~~~~~~~~W~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd04054 77 DVIGKVSLTREVISAHPRGIDGWMNLTEVDPDEEVQGEIHLELS 120 (121)
T ss_pred CEEEEEEEcHHHhccCCCCCCcEEECeeeCCCCccccEEEEEEE
Confidence 99999999998887434457899999876544457899998874
No 40
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.73 E-value=5.5e-17 Score=154.68 Aligned_cols=121 Identities=26% Similarity=0.424 Sum_probs=104.3
Q ss_pred CcEEEEEEEEeeCCCCCCCCCCCCeEEEEEECCeEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCCC
Q 002002 6 NRKLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKTGK 85 (983)
Q Consensus 6 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~~ 85 (983)
...|+|+|++|++|...+..|.+||||++.++++.++|++++++.||.|||.|.|.+.+. ...|.|+|||.+..
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~----~~~l~i~V~d~~~~-- 75 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKP----RSPIKIQVWNSNLL-- 75 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCC----CCEEEEEEEECCCC--
Confidence 468999999999999999899999999999999999999999999999999999988765 67899999987765
Q ss_pred CCCccEEEEEECccceecCCeeeEEEEceecC--CcceeeeEEEEEEEEecC
Q 002002 86 RSTFLGKVKIAGSTFAKVGSESSVYYPLEKRS--VFSQIKGEIGLKVYYIDE 135 (983)
Q Consensus 86 ~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~--~~s~~~G~l~l~i~~~~~ 135 (983)
+|++||++.+++..+. .....|++|.++. ...++.|+|.+++.+.++
T Consensus 76 ~d~~lG~~~~~l~~~~---~~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~~~ 124 (126)
T cd04046 76 CDEFLGQATLSADPND---SQTLRTLPLRKRGRDAAGEVPGTISVKVTSSDD 124 (126)
T ss_pred CCCceEEEEEecccCC---CcCceEEEcccCCCCCCCCCCCEEEEEEEEccc
Confidence 5899999999998754 4556788986543 445688999999988754
No 41
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.73 E-value=1.8e-17 Score=156.51 Aligned_cols=116 Identities=27% Similarity=0.426 Sum_probs=99.6
Q ss_pred EEEEEEEceeccccccccCCCCCCCCCcEEEEEECCEEEEeeeecC-CCCCeeceEEEEEEecC-CCEEEEEEEeCCCCC
Q 002002 588 GLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILD-RFNPRWNEQYTWDVYDP-CTVLTIGVFDNGRYK 665 (983)
Q Consensus 588 g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~~~~rT~~~~~-t~nP~Wne~~~~~v~~~-~~~l~i~v~D~d~~~ 665 (983)
|.|+|+|++|++|+.. |. .|++||||++.+++...+|+++.+ ++||.|||.|.|.+..+ ...|.|+|||++..+
T Consensus 1 g~L~V~v~~A~~L~~~---~~-~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~ 76 (118)
T cd08681 1 GTLVVVVLKARNLPNK---RK-LDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK 76 (118)
T ss_pred CEEEEEEEEccCCCCC---Cc-CCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC
Confidence 6899999999999665 56 789999999999999999999865 78999999999999864 468999999998753
Q ss_pred CcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeeecCCCCCccceEEEEEEEE
Q 002002 666 RDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLPGGAKKMGEIEIAVRF 720 (983)
Q Consensus 666 ~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~f 720 (983)
|++||++.+++.++..+....+||+|... | +..|+|++++.|
T Consensus 77 ---------~~~iG~~~~~l~~~~~~~~~~~w~~L~~~---~-~~~G~i~l~l~f 118 (118)
T cd08681 77 ---------PDLIGDTEVDLSPALKEGEFDDWYELTLK---G-RYAGEVYLELTF 118 (118)
T ss_pred ---------CcceEEEEEecHHHhhcCCCCCcEEeccC---C-cEeeEEEEEEEC
Confidence 67999999999998777667899999742 3 457999999876
No 42
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.73 E-value=4.3e-17 Score=155.63 Aligned_cols=116 Identities=33% Similarity=0.620 Sum_probs=102.1
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCeEEEEEECCeEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCC----
Q 002002 8 KLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKT---- 83 (983)
Q Consensus 8 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~---- 83 (983)
+|.|+|++|++|+.+|..|.+||||++.++++.++|+++++++||.|||+|.|.+..+ ...|.|+|||.+..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~----~~~l~i~v~d~d~~~~~~ 77 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNS----SDRIKVRVWDEDDDIKSR 77 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCC----CCEEEEEEEECCCCcccc
Confidence 7999999999999999999999999999998999999999999999999999998654 46899999987642
Q ss_pred ------CCCCCccEEEEEECccceecCCeeeEEEEceecCCcceeeeEEEEEE
Q 002002 84 ------GKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQIKGEIGLKV 130 (983)
Q Consensus 84 ------~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~s~~~G~l~l~i 130 (983)
.+.+++||++.+++.++. .....||.|++++.++.++|+|++++
T Consensus 78 ~~~~~~~~~~~~iG~~~i~l~~~~---~~~~~w~~L~~~~~~~~~~G~i~~~~ 127 (127)
T cd04027 78 LKQKFTRESDDFLGQTIIEVRTLS---GEMDVWYNLEKRTDKSAVSGAIRLHI 127 (127)
T ss_pred cceeccccCCCcceEEEEEhHHcc---CCCCeEEECccCCCCCcEeEEEEEEC
Confidence 126899999999999875 44579999999888888999999874
No 43
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.73 E-value=6.4e-17 Score=154.02 Aligned_cols=121 Identities=25% Similarity=0.398 Sum_probs=100.5
Q ss_pred CcEEEEEEEEeeCCCCCCCCCCCCeEEEEEECC-eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCC
Q 002002 6 NRKLIVEVCNAKNLMPKDGQGTASAYVIVDFDG-QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKTG 84 (983)
Q Consensus 6 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~ 84 (983)
...|+|+|++|+||+++ +.+||||.|.+++ +..+|+++ +++||.|||+|.|.+..+. ...|.|.|||.+..+
T Consensus 3 ~~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~~~kT~v~-~~~nP~WnE~f~f~~~~~~---~~~l~v~v~d~~~~~ 75 (126)
T cd08400 3 VRSLQLNVLEAHKLPVK---HVPHPYCVISLNEVKVARTKVR-EGPNPVWSEEFVFDDLPPD---VNSFTISLSNKAKRS 75 (126)
T ss_pred eeEEEEEEEEeeCCCCC---CCCCeeEEEEECCEeEEEeecC-CCCCCccCCEEEEecCCCC---cCEEEEEEEECCCCC
Confidence 35799999999999875 4789999999988 45789875 6899999999999875542 357899999988876
Q ss_pred CCCCccEEEEEECccceecCCeeeEEEEceecCC-cceeeeEEEEEEEEecC
Q 002002 85 KRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSV-FSQIKGEIGLKVYYIDE 135 (983)
Q Consensus 85 ~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~-~s~~~G~l~l~i~~~~~ 135 (983)
+|++||++.+++..+. .+.....||+|.+.+. .....|+|+|++.|..+
T Consensus 76 -~d~~iG~v~i~l~~l~-~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~~ 125 (126)
T cd08400 76 -KDSEIAEVTVQLSKLQ-NGQETDEWYPLSSASPLKGGEWGSLRIRARYSHE 125 (126)
T ss_pred -CCCeEEEEEEEHhHcc-CCCcccEeEEcccCCCCCCCcCcEEEEEEEEEcc
Confidence 8999999999999987 4667789999988753 33567999999999753
No 44
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.72 E-value=5e-17 Score=155.91 Aligned_cols=122 Identities=29% Similarity=0.464 Sum_probs=105.1
Q ss_pred cEEEEEEEEeeCCCCCCC--CCCCCeEEEEEECCeEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCC
Q 002002 7 RKLIVEVCNAKNLMPKDG--QGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKTG 84 (983)
Q Consensus 7 ~~L~V~v~~a~~L~~~d~--~g~~dPyv~v~~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~ 84 (983)
+.|.|+|++|++|+.++. .|.+||||.+.+++++++|+++++++||.|||+|.|.+.... ...|.|+|||.+..+
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~---~~~l~i~v~d~~~~~ 77 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQ---NQLLKLILWDKDRFA 77 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCC---CCEEEEEEEECCCCC
Confidence 478999999999999988 889999999999999999999999999999999999997632 679999999888775
Q ss_pred CCCCccEEEEEECcccee--cCCeeeEEEEceecCC--cceeeeEEEEEEEE
Q 002002 85 KRSTFLGKVKIAGSTFAK--VGSESSVYYPLEKRSV--FSQIKGEIGLKVYY 132 (983)
Q Consensus 85 ~~d~~lG~~~i~l~~l~~--~~~~~~~w~~L~~~~~--~s~~~G~l~l~i~~ 132 (983)
++++||++.+++.++.. .......||+|.+... .....|+|+|++.|
T Consensus 78 -~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 78 -GKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred -CCCcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence 78999999999999873 2244679999987632 23478999999875
No 45
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.72 E-value=3e-17 Score=159.34 Aligned_cols=110 Identities=30% Similarity=0.389 Sum_probs=91.6
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCeEEEEEECC-----eEEeeeCcCCCCCCeeeeEEEEEeee------------cCCCCC
Q 002002 8 KLIVEVCNAKNLMPKDGQGTASAYVIVDFDG-----QRRRTKTKFRDLNPQWDERLEFLVHD------------AESMPT 70 (983)
Q Consensus 8 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~WnE~f~f~v~~------------~~~l~~ 70 (983)
+|.|+|++|+||.. .+|.+||||+|.+.+ ++++|+++++++||+|||+|.|.+.. ..++..
T Consensus 1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~ 78 (148)
T cd04010 1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK 78 (148)
T ss_pred CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence 58999999999998 568999999999966 67899999999999999999999951 122334
Q ss_pred ceEEEEEEeCCCCCCCCCccEEEEEECccceecCCeeeEEEEceecCCcc
Q 002002 71 EILEINLYNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFS 120 (983)
Q Consensus 71 ~~L~v~V~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~s 120 (983)
..|.|.||+.+..+ +|+|||++.|++..+...+.....||+|++++..+
T Consensus 79 ~~L~i~V~d~~~~~-~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~~~~ 127 (148)
T cd04010 79 LELRVDLWHASMGG-GDVFLGEVRIPLRGLDLQAGSHQAWYFLQPREEKS 127 (148)
T ss_pred EEEEEEEEcCCCCC-CCceeEEEEEecccccccCCcCcceeecCCccccc
Confidence 68999999888775 89999999999999874324568999998886443
No 46
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.72 E-value=9.8e-17 Score=151.74 Aligned_cols=118 Identities=27% Similarity=0.516 Sum_probs=103.8
Q ss_pred cEEEEEEEEeeCCCCCCCCCCCCeEEEEEECCeEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCCCC
Q 002002 7 RKLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKTGKR 86 (983)
Q Consensus 7 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~~~ 86 (983)
+.|.|+|++|++|+..+..+.+||||++.+++..++|++++++.||.|||+|.|.+... ...|.|+|||.+..+ +
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~----~~~l~~~v~d~~~~~-~ 75 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDI----HDVLEVTVYDEDKDK-K 75 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCc----CCEEEEEEEECCCCC-C
Confidence 46899999999999999889999999999999889999999999999999999998654 578999999887765 8
Q ss_pred CCccEEEEEECccceecCCeeeEEEEceecCCcceeeeEEEEEEEE
Q 002002 87 STFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQIKGEIGLKVYY 132 (983)
Q Consensus 87 d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~s~~~G~l~l~i~~ 132 (983)
+++||++.+++.++. . ....||+|.+.....+.+|+|.+++.+
T Consensus 76 ~~~iG~~~~~l~~~~-~--~~~~~~~l~~~~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 76 PEFLGKVAIPLLSIK-N--GERKWYALKDKKLRTRAKGSILLEMDV 118 (119)
T ss_pred CceeeEEEEEHHHCC-C--CCceEEECcccCCCCceeeEEEEEEEe
Confidence 899999999999986 2 235799998876666689999999865
No 47
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.72 E-value=1.2e-16 Score=153.88 Aligned_cols=120 Identities=25% Similarity=0.444 Sum_probs=101.1
Q ss_pred CCCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEECCeEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCC
Q 002002 4 SCNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKT 83 (983)
Q Consensus 4 ~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~ 83 (983)
.+.+.|.|+|++|++|++.|..|.+||||++.++++.++|+++++++||.|||+|.|.+.... ...|.|+|||.+..
T Consensus 12 ~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~---~~~l~i~V~D~d~~ 88 (136)
T cd08375 12 SGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLE---QDVLCITVFDRDFF 88 (136)
T ss_pred CCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCcc---CCEEEEEEEECCCC
Confidence 345899999999999999999999999999999999999999999999999999999997643 57899999998877
Q ss_pred CCCCCccEEEEEECccceec----CCeeeEEEEceecCCcceeeeEEEEEEEE
Q 002002 84 GKRSTFLGKVKIAGSTFAKV----GSESSVYYPLEKRSVFSQIKGEIGLKVYY 132 (983)
Q Consensus 84 ~~~d~~lG~~~i~l~~l~~~----~~~~~~w~~L~~~~~~s~~~G~l~l~i~~ 132 (983)
+ +|++||++.+++.++... ......|..|.. ..+|+|+|++.+
T Consensus 89 ~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~-----~~~g~i~l~~~~ 135 (136)
T cd08375 89 S-PDDFLGRTEIRVADILKETKESKGPITKRLLLHE-----VPTGEVVVKLDL 135 (136)
T ss_pred C-CCCeeEEEEEEHHHhccccccCCCcEEEEecccc-----ccceeEEEEEEe
Confidence 6 899999999999998841 122335555532 346999999875
No 48
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.72 E-value=7.5e-17 Score=155.74 Aligned_cols=119 Identities=27% Similarity=0.428 Sum_probs=100.7
Q ss_pred EEEEEEceeccccccccCCCCCCCCCcEEEEEECCE-------EEEeeeecCCCCCeeceEEEEEEecCCCEEEEEEEeC
Q 002002 589 LLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPK-------WVRTRTILDRFNPRWNEQYTWDVYDPCTVLTIGVFDN 661 (983)
Q Consensus 589 ~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~~-------~~rT~~~~~t~nP~Wne~~~~~v~~~~~~l~i~v~D~ 661 (983)
.|+|+|++|+||+.+ |. .|.+||||++++++. ..+|+++.+++||.|||+|.|.+......|.|+|||+
T Consensus 1 ~L~v~Vi~a~~L~~~---d~-~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~ 76 (133)
T cd04033 1 ILRVKVLAGIDLAKK---DI-FGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDE 76 (133)
T ss_pred CEEEEEEEeECCCcc---cC-CCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEEC
Confidence 388999999999655 55 789999999998653 5799999999999999999999977677899999999
Q ss_pred CCCCCcCCCCCCCCceeEEEEEEcccccCCCe------EEEEEEeeecCCCCCccceEEEEEEEE
Q 002002 662 GRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRV------YLNSYSLTVLLPGGAKKMGEIEIAVRF 720 (983)
Q Consensus 662 d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~------~~~~~~L~~~~~~g~~~~G~l~l~~~f 720 (983)
+..+ +|++||++.+++.++..+.. ...||+|......+ +..|+|++++.|
T Consensus 77 ~~~~--------~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~-~~~G~l~~~~~~ 132 (133)
T cd04033 77 NRLT--------RDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKS-RVKGHLRLYMAY 132 (133)
T ss_pred CCCC--------CCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCC-cceeEEEEEEee
Confidence 9887 68899999999999876532 35899998654444 457999999987
No 49
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.71 E-value=3.4e-17 Score=154.80 Aligned_cols=105 Identities=28% Similarity=0.409 Sum_probs=91.5
Q ss_pred CcEEEEEEEEeeCCCCCCCCCCCCeEEEEEEC-----CeEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeC
Q 002002 6 NRKLIVEVCNAKNLMPKDGQGTASAYVIVDFD-----GQRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYND 80 (983)
Q Consensus 6 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~-----~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~ 80 (983)
...|.|+|++|++|++++ .|.+||||++++. ..+++|+++++++||.|||+|.|.+.....+....|.|.|||.
T Consensus 12 ~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~ 90 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSH 90 (122)
T ss_pred CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeC
Confidence 468999999999999999 8999999999995 2578999999999999999999998433344578999999998
Q ss_pred CCCCCCCCccEEEEEECccceecCCeeeEEEEc
Q 002002 81 KKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPL 113 (983)
Q Consensus 81 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L 113 (983)
+..+ ++++||++.+++.++. .+.....||+|
T Consensus 91 d~~~-~~~~lG~~~i~l~~l~-~~~~~~~W~~L 121 (122)
T cd08381 91 DSLV-ENEFLGGVCIPLKKLD-LSQETEKWYPL 121 (122)
T ss_pred CCCc-CCcEEEEEEEeccccc-cCCCccceEEC
Confidence 8876 8999999999999987 44567899988
No 50
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.71 E-value=1.8e-16 Score=151.18 Aligned_cols=119 Identities=22% Similarity=0.300 Sum_probs=100.6
Q ss_pred cEEEEEEEceeccccccccCCCCCCCCCcEEEEEECCEEEEeeeecCCCCCeeceEEEEEEecCCCEEEEEEEeCCCCCC
Q 002002 587 IGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILDRFNPRWNEQYTWDVYDPCTVLTIGVFDNGRYKR 666 (983)
Q Consensus 587 ~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~~~~rT~~~~~t~nP~Wne~~~~~v~~~~~~l~i~v~D~d~~~~ 666 (983)
.++|+|+|++|++|... |. .|++||||++++++...+|++++++.||+|||.|.|.+.++...|.|+|||++..+
T Consensus 2 ~~~~~V~v~~A~~L~~~---d~-~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~~- 76 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQ---DS-GGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNLLC- 76 (126)
T ss_pred cEEEEEEEEeCcCCCCC---CC-CCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCCCCEEEEEEEECCCCC-
Confidence 46899999999999654 56 88999999999999999999999999999999999999888889999999998754
Q ss_pred cCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeeecC--CCCCccceEEEEEEEEE
Q 002002 667 DEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLL--PGGAKKMGEIEIAVRFT 721 (983)
Q Consensus 667 ~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~--~~g~~~~G~l~l~~~f~ 721 (983)
|++||++.+++..+..+. .++|+|.... .++ +..|+|.+++.+.
T Consensus 77 --------d~~lG~~~~~l~~~~~~~--~~~~~l~~~~~~~~~-~~~G~i~~~~~~~ 122 (126)
T cd04046 77 --------DEFLGQATLSADPNDSQT--LRTLPLRKRGRDAAG-EVPGTISVKVTSS 122 (126)
T ss_pred --------CCceEEEEEecccCCCcC--ceEEEcccCCCCCCC-CCCCEEEEEEEEc
Confidence 679999999998865444 5778886332 233 4579999998775
No 51
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.71 E-value=8.8e-17 Score=154.19 Aligned_cols=123 Identities=23% Similarity=0.446 Sum_probs=102.4
Q ss_pred EEEEEEEceeccccccccCCCCCCCCCcEEEEEECCEEEEeeeecCCCCCeeceEEEEEEec-CCCEEEEEEEeCCCCCC
Q 002002 588 GLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILDRFNPRWNEQYTWDVYD-PCTVLTIGVFDNGRYKR 666 (983)
Q Consensus 588 g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~~~~rT~~~~~t~nP~Wne~~~~~v~~-~~~~l~i~v~D~d~~~~ 666 (983)
|.|.|+|++|+||+.++.. + .|.+||||++.+++...+|+++++++||.|||.|.|++.+ ....|.|+|||++..+
T Consensus 1 g~l~v~v~~a~~L~~~~~~-~-~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~- 77 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRS-G-KGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFA- 77 (128)
T ss_pred CEEEEEEEEeeCCCcccCC-C-CCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCC-
Confidence 7899999999999876421 2 5789999999999999999999999999999999999987 4679999999999876
Q ss_pred cCCCCCCCCceeEEEEEEccccc---CCCeEEEEEEeeecCCC-CCccceEEEEEEEE
Q 002002 667 DEAGKPGKDVRVGKIRVRLSTLD---TNRVYLNSYSLTVLLPG-GAKKMGEIEIAVRF 720 (983)
Q Consensus 667 ~~~~~~~~d~~lG~~~i~l~~l~---~~~~~~~~~~L~~~~~~-g~~~~G~l~l~~~f 720 (983)
.|++||++.+++.++. .......||+|...... .....|+|+|.+.|
T Consensus 78 -------~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 78 -------GKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred -------CCCcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence 6789999999999987 33445789999865322 23457999998754
No 52
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.71 E-value=1e-16 Score=152.38 Aligned_cols=118 Identities=26% Similarity=0.437 Sum_probs=101.6
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCeEEEEEECCeEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCCCCC
Q 002002 8 KLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKTGKRS 87 (983)
Q Consensus 8 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~~~d 87 (983)
+|+|+|++|++|..++..|.+||||++.++++..+|+++++++||.|||+|.|.+.... ...|.|+|||.+..+ ++
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~---~~~l~~~v~d~~~~~-~~ 76 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGA---DSPLSVEVWDWDLVS-KN 76 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCC---CCEEEEEEEECCCCC-CC
Confidence 48999999999999998899999999999999999999999999999999999997642 578999999988776 78
Q ss_pred CccEEEEEECccceecCCeeeEEEEceecCCcc----eeeeEEEEEE
Q 002002 88 TFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFS----QIKGEIGLKV 130 (983)
Q Consensus 88 ~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~s----~~~G~l~l~i 130 (983)
++||++.+++.++. .+.....||.|.+..... ...|.|.+.|
T Consensus 77 ~~iG~~~~~l~~l~-~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 77 DFLGKVVFSIQTLQ-QAKQEEGWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred cEeEEEEEEHHHcc-cCCCCCCEEECCCCCCCCccccCceEEEEEEe
Confidence 99999999999987 345568899998754332 3569988876
No 53
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.71 E-value=1.3e-16 Score=150.90 Aligned_cols=117 Identities=26% Similarity=0.399 Sum_probs=99.7
Q ss_pred EEEEEceeccccccccCCCCCCCCCcEEEEEECCE-EEEeeeecCCCCCeeceEEEEEEecCCCEEEEEEEeCCCCCCcC
Q 002002 590 LEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPK-WVRTRTILDRFNPRWNEQYTWDVYDPCTVLTIGVFDNGRYKRDE 668 (983)
Q Consensus 590 L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~~-~~rT~~~~~t~nP~Wne~~~~~v~~~~~~l~i~v~D~d~~~~~~ 668 (983)
|.|+|++|+||+++ |. .|++||||++++++. ..||+++.+++||.|||.|.|.+......|.|.|||++..+
T Consensus 2 l~v~vi~a~~L~~~---d~-~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~--- 74 (121)
T cd04054 2 LYIRIVEGKNLPAK---DI-TGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLS--- 74 (121)
T ss_pred EEEEEEEeeCCcCC---CC-CCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCCCEEEEEEEECCCCC---
Confidence 78999999999765 56 789999999999875 56999999999999999999999877789999999999987
Q ss_pred CCCCCCCceeEEEEEEcccccCC-CeEEEEEEeeecCCCCCccceEEEEEEE
Q 002002 669 AGKPGKDVRVGKIRVRLSTLDTN-RVYLNSYSLTVLLPGGAKKMGEIEIAVR 719 (983)
Q Consensus 669 ~~~~~~d~~lG~~~i~l~~l~~~-~~~~~~~~L~~~~~~g~~~~G~l~l~~~ 719 (983)
+|++||++.+++.++..+ .....|++|......+ ...|+|++.++
T Consensus 75 -----~d~~iG~~~~~~~~~~~~~~~~~~W~~L~~~~~~~-~~~G~i~l~~~ 120 (121)
T cd04054 75 -----RDDVIGKVSLTREVISAHPRGIDGWMNLTEVDPDE-EVQGEIHLELS 120 (121)
T ss_pred -----CCCEEEEEEEcHHHhccCCCCCCcEEECeeeCCCC-ccccEEEEEEE
Confidence 788999999999988753 3357899998654433 34699998864
No 54
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.70 E-value=1.2e-16 Score=151.96 Aligned_cols=119 Identities=24% Similarity=0.389 Sum_probs=100.8
Q ss_pred EEEEEEceeccccccccCCCCCCCCCcEEEEEECCEEEEeeeecCCCCCeeceEEEEEEecC-CCEEEEEEEeCCCCCCc
Q 002002 589 LLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILDRFNPRWNEQYTWDVYDP-CTVLTIGVFDNGRYKRD 667 (983)
Q Consensus 589 ~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~~~~rT~~~~~t~nP~Wne~~~~~v~~~-~~~l~i~v~D~d~~~~~ 667 (983)
.|+|+|++|++|+.+ |. .|.+||||.+++++...+|+++++++||.|||+|.|.+.+. ...|.|+|||++..+
T Consensus 1 ~L~v~vi~a~~L~~~---d~-~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~-- 74 (123)
T cd04025 1 RLRCHVLEARDLAPK---DR-NGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVS-- 74 (123)
T ss_pred CEEEEEEEeeCCCCC---CC-CCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCC--
Confidence 388999999999765 55 67899999999999999999999999999999999999875 468999999999887
Q ss_pred CCCCCCCCceeEEEEEEcccccCCCeEEEEEEeeecCCC---CCccceEEEEEEE
Q 002002 668 EAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLPG---GAKKMGEIEIAVR 719 (983)
Q Consensus 668 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~---g~~~~G~l~l~~~ 719 (983)
+|++||++.++|.++..+.....||.|...... ..+..|.|++.|+
T Consensus 75 ------~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~~ 123 (123)
T cd04025 75 ------KNDFLGKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKVR 123 (123)
T ss_pred ------CCcEeEEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEeC
Confidence 678999999999999876666889998864221 1245799999874
No 55
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.70 E-value=1.6e-16 Score=150.73 Aligned_cols=118 Identities=24% Similarity=0.419 Sum_probs=101.2
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCeEEEEEEC-CeEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCCCC
Q 002002 8 KLIVEVCNAKNLMPKDGQGTASAYVIVDFD-GQRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKTGKR 86 (983)
Q Consensus 8 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~-~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~~~ 86 (983)
.|+|+|++|++|+.++..|.+||||++.++ .+.++|+++++++||.|||+|.|.+.. ...|.|+|||.+..+..
T Consensus 1 ~l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-----~~~l~i~V~d~~~~~~~ 75 (123)
T cd08382 1 KVRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP-----SSIITIQVFDQKKFKKK 75 (123)
T ss_pred CeEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC-----CCEEEEEEEECCCCCCC
Confidence 389999999999999989999999999997 588999999999999999999999954 57999999998877532
Q ss_pred -CCccEEEEEECccceecCCeeeEEEEceecCC--cceeeeEEEEEE
Q 002002 87 -STFLGKVKIAGSTFAKVGSESSVYYPLEKRSV--FSQIKGEIGLKV 130 (983)
Q Consensus 87 -d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~--~s~~~G~l~l~i 130 (983)
++|||++.+++.++.........||+|++... ...+.|+|.+++
T Consensus 76 ~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 76 DQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred CCceEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence 58999999999999855445578999977654 445789999875
No 56
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.70 E-value=6.8e-17 Score=148.29 Aligned_cols=103 Identities=19% Similarity=0.271 Sum_probs=87.0
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEECC----eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeC
Q 002002 5 CNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFDG----QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYND 80 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~----~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~ 80 (983)
..+.|.|+|++|++|+ . .|.+||||++++.. .+++|+++++|+||+|||+|.|.+.. +++....|.|.|||.
T Consensus 12 ~~~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~-~~l~~~tL~~~V~d~ 87 (118)
T cd08677 12 QKAELHVNILEAENIS-V--DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPE-EESLDGTLTLTLRCC 87 (118)
T ss_pred cCCEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCH-HHhCCcEEEEEEEeC
Confidence 4578999999999998 3 36699999999953 57889999999999999999999876 567788999999999
Q ss_pred CCCCCCCCccEEEEEECccceecCCeeeEEEEc
Q 002002 81 KKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPL 113 (983)
Q Consensus 81 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L 113 (983)
|+++ ++++||++.+++..+. .+.....|..|
T Consensus 88 Drfs-~~d~IG~v~l~l~~~~-~~~~~~~W~~~ 118 (118)
T cd08677 88 DRFS-RHSTLGELRLKLADVS-MMLGAAQWVDL 118 (118)
T ss_pred CCCC-CCceEEEEEEcccccc-CCccccchhcC
Confidence 9997 8999999999999874 23444567554
No 57
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.69 E-value=1.3e-16 Score=146.85 Aligned_cols=103 Identities=30% Similarity=0.430 Sum_probs=91.3
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCeEEEEEECCeEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCCCCC
Q 002002 8 KLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKTGKRS 87 (983)
Q Consensus 8 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~~~d 87 (983)
.|.|+|++|++|+..+..|.+||||+++++++.++|++++++.||.|||+|.|.+..+. ...|.|+||+.+. +
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~---~~~l~v~v~d~~~----~ 73 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPE---NQELEIEVKDDKT----G 73 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCC---CCEEEEEEEECCC----C
Confidence 38999999999999998999999999999999999999999999999999999998753 5789999997654 7
Q ss_pred CccEEEEEECccceec-CCeeeEEEEceecC
Q 002002 88 TFLGKVKIAGSTFAKV-GSESSVYYPLEKRS 117 (983)
Q Consensus 88 ~~lG~~~i~l~~l~~~-~~~~~~w~~L~~~~ 117 (983)
++||++.+++..+... +...+.||+|++++
T Consensus 74 ~~iG~~~i~l~~l~~~~~~~~~~w~~L~~~g 104 (105)
T cd04050 74 KSLGSLTLPLSELLKEPDLTLDQPFPLDNSG 104 (105)
T ss_pred CccEEEEEEHHHhhccccceeeeeEecCCCC
Confidence 8999999999998743 34678999998763
No 58
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.69 E-value=2.2e-16 Score=149.19 Aligned_cols=113 Identities=27% Similarity=0.444 Sum_probs=98.9
Q ss_pred EEEEEEEeeCCCCCCCCCCCCeEEEEEECC---eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCCC
Q 002002 9 LIVEVCNAKNLMPKDGQGTASAYVIVDFDG---QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKTGK 85 (983)
Q Consensus 9 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~---~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~~ 85 (983)
|.|+|++|++|+..+..|.+||||++.+.+ ++++|++++++.||.|||+|.|.+.... ...|.|+|||.+..
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~---~~~l~v~v~d~d~~-- 76 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQV---KNVLELTVMDEDYV-- 76 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCccc---CCEEEEEEEECCCC--
Confidence 789999999999999889999999999963 6789999999999999999999987642 56799999987766
Q ss_pred CCCccEEEEEECccceecCCeeeEEEEceecCCcceeeeEEEEEEEE
Q 002002 86 RSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQIKGEIGLKVYY 132 (983)
Q Consensus 86 ~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~s~~~G~l~l~i~~ 132 (983)
++++||++.+++..+. .+.....||+|.+.+ +|+|.+++.+
T Consensus 77 ~~~~iG~~~~~l~~l~-~g~~~~~~~~L~~~~-----~g~l~~~~~~ 117 (119)
T cd04036 77 MDDHLGTVLFDVSKLK-LGEKVRVTFSLNPQG-----KEELEVEFLL 117 (119)
T ss_pred CCcccEEEEEEHHHCC-CCCcEEEEEECCCCC-----CceEEEEEEe
Confidence 7899999999999987 667889999998752 5999988865
No 59
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.69 E-value=2.8e-16 Score=155.21 Aligned_cols=120 Identities=20% Similarity=0.323 Sum_probs=101.5
Q ss_pred cEEEEEEEEeeCCCCCC------------------------------CCCCCCeEEEEEECCe-EEeeeCcCCCCCCeee
Q 002002 7 RKLIVEVCNAKNLMPKD------------------------------GQGTASAYVIVDFDGQ-RRRTKTKFRDLNPQWD 55 (983)
Q Consensus 7 ~~L~V~v~~a~~L~~~d------------------------------~~g~~dPyv~v~~~~~-~~~T~~~~~t~nP~Wn 55 (983)
+.|.|+|.+|++|+.+| ..|++||||+|.+++. ..+|++++++.||.||
T Consensus 7 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~Wn 86 (158)
T cd04015 7 GTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVWN 86 (158)
T ss_pred eeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCccc
Confidence 57899999999999987 3577999999999984 4699999999999999
Q ss_pred eEEEEEeeecCCCCCceEEEEEEeCCCCCCCCCccEEEEEECccceecCCeeeEEEEceecCCcce-eeeEEEEEEEEe
Q 002002 56 ERLEFLVHDAESMPTEILEINLYNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQ-IKGEIGLKVYYI 133 (983)
Q Consensus 56 E~f~f~v~~~~~l~~~~L~v~V~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~s~-~~G~l~l~i~~~ 133 (983)
|+|.|.+... ...|.|.|||++.. ++++||++.++++++. .+...+.||+|.+..+... ..|.|++++.|+
T Consensus 87 E~F~~~~~~~----~~~l~~~V~d~d~~--~~~~IG~~~i~l~~l~-~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f~ 158 (158)
T cd04015 87 ESFHIYCAHY----ASHVEFTVKDNDVV--GAQLIGRAYIPVEDLL-SGEPVEGWLPILDSNGKPPKPGAKIRVSLQFT 158 (158)
T ss_pred eEEEEEccCC----CCEEEEEEEeCCCc--CCcEEEEEEEEhHHcc-CCCCcceEEECcCCCCCCCCCCCEEEEEEEEC
Confidence 9999998664 56899999987766 4689999999999988 5677889999987644432 348999998874
No 60
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.69 E-value=3.3e-16 Score=148.71 Aligned_cols=105 Identities=17% Similarity=0.289 Sum_probs=90.3
Q ss_pred CcEEEEEEEceeccccccccCCCCCCCCCcEEEEEECC-----EEEEeeeecCCCCCeeceEEEEEEec---CCCEEEEE
Q 002002 586 PIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP-----KWVRTRTILDRFNPRWNEQYTWDVYD---PCTVLTIG 657 (983)
Q Consensus 586 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~-----~~~rT~~~~~t~nP~Wne~~~~~v~~---~~~~l~i~ 657 (983)
..|.|.|+|++|+||++++ ...|.+||||++.+.+ ...||+++++++||.|||+|.|++.. ....|.|+
T Consensus 13 ~~~~L~V~Vi~a~~L~~~~---~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~ 89 (125)
T cd04029 13 KTQSLNVHVKECRNLAYGD---EAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLS 89 (125)
T ss_pred CCCeEEEEEEEecCCCccC---CCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEE
Confidence 4678999999999998763 2257899999999842 35799999999999999999999864 24589999
Q ss_pred EEeCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEee
Q 002002 658 VFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLT 701 (983)
Q Consensus 658 v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 701 (983)
|||++..+ +|++||.+.|+|.++......+.||||.
T Consensus 90 V~d~~~~~--------~~~~lG~~~i~l~~~~~~~~~~~w~~l~ 125 (125)
T cd04029 90 VWHYDRFG--------RNTFLGEVEIPLDSWNFDSQHEECLPLH 125 (125)
T ss_pred EEECCCCC--------CCcEEEEEEEeCCcccccCCcccEEECc
Confidence 99999887 7789999999999999888889999983
No 61
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.69 E-value=2.7e-16 Score=149.20 Aligned_cols=118 Identities=25% Similarity=0.479 Sum_probs=99.3
Q ss_pred EEEEEEEceeccccccccCC--CCCCCCCcEEEEEECCEEEEeeeecCCCCCeeceEEEEEEec-CCCEEEEEEEeCCCC
Q 002002 588 GLLEVGIRGATNLLPVKTKD--GTRGTTDAYVVAKYGPKWVRTRTILDRFNPRWNEQYTWDVYD-PCTVLTIGVFDNGRY 664 (983)
Q Consensus 588 g~L~v~v~~a~~L~~~~~~d--~~~g~sDpy~~~~~~~~~~rT~~~~~t~nP~Wne~~~~~v~~-~~~~l~i~v~D~d~~ 664 (983)
|.|+|+|++|+||+.++..- ...|.+||||++++++...+|++++++.||.|||.|.|.+.+ ....|.|+|||++..
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~ 80 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPD 80 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCC
Confidence 68999999999997764210 013689999999999999999999999999999999999975 456999999999875
Q ss_pred CCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeeecCCCCCccceEEEEEEEE
Q 002002 665 KRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLPGGAKKMGEIEIAVRF 720 (983)
Q Consensus 665 ~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~f 720 (983)
+|++||++.+++.++..+.....||+|... ..|+|++.++|
T Consensus 81 ---------~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~------~~G~~~~~~~~ 121 (121)
T cd08391 81 ---------KDDFLGRLSIDLGSVEKKGFIDEWLPLEDV------KSGRLHLKLEW 121 (121)
T ss_pred ---------CCCcEEEEEEEHHHhcccCccceEEECcCC------CCceEEEEEeC
Confidence 366999999999999887777899999743 35999998765
No 62
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.68 E-value=3.4e-16 Score=149.20 Aligned_cols=120 Identities=33% Similarity=0.420 Sum_probs=100.0
Q ss_pred cEEEEEEEceeccccccccCCCCCCCCCcEEEEEECC--EEEEeeeecCCCCCeeceEEEEEEecCCCEEEEEEEeCCCC
Q 002002 587 IGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP--KWVRTRTILDRFNPRWNEQYTWDVYDPCTVLTIGVFDNGRY 664 (983)
Q Consensus 587 ~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~--~~~rT~~~~~t~nP~Wne~~~~~v~~~~~~l~i~v~D~d~~ 664 (983)
+|.|+|+|++|++|+.. +...|.+||||++++++ ...+|+++.++.||.|||.|.|.+......|.|+|||++..
T Consensus 1 ~g~l~v~v~~a~~L~~~---~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~ 77 (124)
T cd04044 1 IGVLAVTIKSARGLKGS---DIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFNDK 77 (124)
T ss_pred CeEEEEEEEcccCCCcc---cccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCCC
Confidence 58999999999999743 32156799999999987 78999999999999999999999986678999999999987
Q ss_pred CCcCCCCCCCCceeEEEEEEcccccCCCeEEE-EEEeeecCCCCCccceEEEEEEEEE
Q 002002 665 KRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLN-SYSLTVLLPGGAKKMGEIEIAVRFT 721 (983)
Q Consensus 665 ~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~-~~~L~~~~~~g~~~~G~l~l~~~f~ 721 (983)
+ .|++||++.++|.++..+..... ++++. ..| +..|+|++.++|.
T Consensus 78 ~--------~d~~iG~~~~~l~~l~~~~~~~~~~~~~~---~~~-k~~G~i~~~l~~~ 123 (124)
T cd04044 78 R--------KDKLIGTAEFDLSSLLQNPEQENLTKNLL---RNG-KPVGELNYDLRFF 123 (124)
T ss_pred C--------CCceeEEEEEEHHHhccCccccCcchhhh---cCC-ccceEEEEEEEeC
Confidence 6 68899999999999987765543 33343 233 4579999999984
No 63
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.68 E-value=3.9e-16 Score=148.08 Aligned_cols=115 Identities=30% Similarity=0.516 Sum_probs=99.3
Q ss_pred cEEEEEEEEeeCCCCCCC------CCCCCeEEEEEECCeEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeC
Q 002002 7 RKLIVEVCNAKNLMPKDG------QGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYND 80 (983)
Q Consensus 7 ~~L~V~v~~a~~L~~~d~------~g~~dPyv~v~~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~ 80 (983)
+.|.|+|++|++|+.+|. .|.+||||+++++++.++|+++++++||.|||+|.|.+.... ...|.|.|||.
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~---~~~l~i~v~d~ 77 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVP---GQELEIELFDE 77 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCC---CCEEEEEEEec
Confidence 368999999999998875 368999999999999999999999999999999999987542 67999999987
Q ss_pred CCCCCCCCccEEEEEECccceecCCeeeEEEEceecCCcceeeeEEEEEEEE
Q 002002 81 KKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQIKGEIGLKVYY 132 (983)
Q Consensus 81 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~s~~~G~l~l~i~~ 132 (983)
+.. ++++||++.+++.++. .+.....||+|.+. ..|+|++.+.|
T Consensus 78 ~~~--~~~~iG~~~i~l~~l~-~~~~~~~w~~L~~~-----~~G~~~~~~~~ 121 (121)
T cd08391 78 DPD--KDDFLGRLSIDLGSVE-KKGFIDEWLPLEDV-----KSGRLHLKLEW 121 (121)
T ss_pred CCC--CCCcEEEEEEEHHHhc-ccCccceEEECcCC-----CCceEEEEEeC
Confidence 765 7899999999999988 44567899999864 35999998754
No 64
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.68 E-value=6.1e-16 Score=149.36 Aligned_cols=124 Identities=22% Similarity=0.374 Sum_probs=101.2
Q ss_pred cEEEEEEEEeeCCCCCCCCCCCCeEEEEEECCeEEeeeCcCCCCCCeeeeEEEEEeeec----CCC--CCceEEEEEEeC
Q 002002 7 RKLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHDA----ESM--PTEILEINLYND 80 (983)
Q Consensus 7 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~----~~l--~~~~L~v~V~~~ 80 (983)
+.|+|+|++|++|+.+|..|.+||||+|.+++++++|+++++++||.|||+|.|.+... ..+ ....|.|+|||.
T Consensus 1 ~~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~ 80 (135)
T cd04017 1 FQLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQ 80 (135)
T ss_pred CEEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeC
Confidence 57999999999999999999999999999999999999999999999999999985431 111 125789999998
Q ss_pred CCCCCCCCccEEEEE-ECcccee--cCCeeeEEEEceecCCcceeeeEEEEEEEEec
Q 002002 81 KKTGKRSTFLGKVKI-AGSTFAK--VGSESSVYYPLEKRSVFSQIKGEIGLKVYYID 134 (983)
Q Consensus 81 ~~~~~~d~~lG~~~i-~l~~l~~--~~~~~~~w~~L~~~~~~s~~~G~l~l~i~~~~ 134 (983)
+..+ +|++||++.+ ++..+.. .+....+|++|.+.+ ...|+|++.+.+..
T Consensus 81 d~~~-~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~~---~~~Geil~~~~~~~ 133 (135)
T cd04017 81 DSVG-KDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKGG---QSAGELLAAFELIE 133 (135)
T ss_pred cCCC-CCccceEEEeeeeeecccCCCCCCCceEEEeecCC---CchhheeEEeEEEE
Confidence 8775 8899999987 4444432 245677999998654 25799999998864
No 65
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.67 E-value=6.6e-16 Score=147.86 Aligned_cols=117 Identities=23% Similarity=0.376 Sum_probs=99.3
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCeEEEEEECC-------------eEEeeeCcCCCCCCee-eeEEEEEeeecCCCCCceE
Q 002002 8 KLIVEVCNAKNLMPKDGQGTASAYVIVDFDG-------------QRRRTKTKFRDLNPQW-DERLEFLVHDAESMPTEIL 73 (983)
Q Consensus 8 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-------------~~~~T~~~~~t~nP~W-nE~f~f~v~~~~~l~~~~L 73 (983)
...|++++|+||. ++..|.+||||++++.. ++++|+++++++||+| ||+|.|.+.. .+.|
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~-----~~~L 75 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP-----TDVL 75 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC-----CCEE
Confidence 4679999999998 77789999999999942 4789999999999999 9999999853 4689
Q ss_pred EEEEEeCCCCCC--CCCccEEEEEECccceec--CCeeeEEEEceecCCcceeeeEEEEEE
Q 002002 74 EINLYNDKKTGK--RSTFLGKVKIAGSTFAKV--GSESSVYYPLEKRSVFSQIKGEIGLKV 130 (983)
Q Consensus 74 ~v~V~~~~~~~~--~d~~lG~~~i~l~~l~~~--~~~~~~w~~L~~~~~~s~~~G~l~l~i 130 (983)
.|+|||.+..+. .+++||++.+++.++... .....+||+|++++.++.++|+|.+++
T Consensus 76 ~v~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 76 EIEVKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTPTDHVSGQLTFRF 136 (137)
T ss_pred EEEEEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCCCCcEEEEEEEEe
Confidence 999998654331 279999999999999743 344778999999999999999999986
No 66
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.67 E-value=3.3e-16 Score=144.27 Aligned_cols=97 Identities=23% Similarity=0.358 Sum_probs=83.4
Q ss_pred EEEEEEEceeccccccccCCCCCCCCCcEEEEEECCEEEEeeeecCCCCCeeceEEEEEEecC--CCEEEEEEEeCCCCC
Q 002002 588 GLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILDRFNPRWNEQYTWDVYDP--CTVLTIGVFDNGRYK 665 (983)
Q Consensus 588 g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~~~~rT~~~~~t~nP~Wne~~~~~v~~~--~~~l~i~v~D~d~~~ 665 (983)
|+|.|+|++|++|++.+......+++||||++++++...||+++++++||+|||.|.|.+.+. ...|.|+|||++..+
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~ 80 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFS 80 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCC
Confidence 789999999999988753211134689999999999999999999999999999999998654 348999999999987
Q ss_pred CcCCCCCCCCceeEEEEEEcccccCCC
Q 002002 666 RDEAGKPGKDVRVGKIRVRLSTLDTNR 692 (983)
Q Consensus 666 ~~~~~~~~~d~~lG~~~i~l~~l~~~~ 692 (983)
+|++||++.++|++|..+.
T Consensus 81 --------~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 81 --------FNDYVATGSLSVQELLNAA 99 (108)
T ss_pred --------CCcceEEEEEEHHHHHhhC
Confidence 7889999999999997654
No 67
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.67 E-value=3.4e-16 Score=150.82 Aligned_cols=105 Identities=25% Similarity=0.332 Sum_probs=90.3
Q ss_pred EEEEEEEceeccccccccCCCCCCCCCcEEEEEECC-----EEEEeeeecCCCCCeeceEEEEEEecCCCEEEEEEE-eC
Q 002002 588 GLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP-----KWVRTRTILDRFNPRWNEQYTWDVYDPCTVLTIGVF-DN 661 (983)
Q Consensus 588 g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~-----~~~rT~~~~~t~nP~Wne~~~~~v~~~~~~l~i~v~-D~ 661 (983)
|.|.|+|++|+||++++ +. .|.+||||++++.. .+.||+++++|+||+|||+|.|.+......|.|+|| |+
T Consensus 29 ~~L~V~Vi~ArnL~~~~--~~-~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l~~~~L~v~V~~d~ 105 (146)
T cd04028 29 GQLEVEVIRARGLVQKP--GS-KVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVSPTGKTLQVIVWGDY 105 (146)
T ss_pred CEEEEEEEEeeCCCccc--CC-CCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEcCCCCEEEEEEEeCC
Confidence 58999999999998753 23 67899999999843 377999999999999999999999866669999999 57
Q ss_pred CCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeeec
Q 002002 662 GRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVL 703 (983)
Q Consensus 662 d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 703 (983)
+..+ ++++||.+.|+|+++..+.....||+|...
T Consensus 106 ~~~~--------~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~ 139 (146)
T cd04028 106 GRMD--------KKVFMGVAQILLDDLDLSNLVIGWYKLFPT 139 (146)
T ss_pred CCCC--------CCceEEEEEEEcccccCCCCceeEEecCCc
Confidence 7665 677999999999999877777899999854
No 68
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.67 E-value=7.7e-16 Score=146.97 Aligned_cols=123 Identities=23% Similarity=0.376 Sum_probs=97.7
Q ss_pred EEEEEEceeccccccccCCCCCCCCCcEEEEEECCEEEEeeeecCCCCCeeceEEEEEEecCCCEEEEEEEeCCCCCCcC
Q 002002 589 LLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILDRFNPRWNEQYTWDVYDPCTVLTIGVFDNGRYKRDE 668 (983)
Q Consensus 589 ~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~~~~rT~~~~~t~nP~Wne~~~~~v~~~~~~l~i~v~D~d~~~~~~ 668 (983)
.|+|+|++|++|+.+ |. .|.+||||++++++...+|+++.+++||.|||.|.|.+..+...|.|+|||+|......
T Consensus 2 ~L~V~vi~a~~L~~~---d~-~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~ 77 (127)
T cd04027 2 KISITVVCAQGLIAK---DK-TGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSR 77 (127)
T ss_pred eEEEEEEECcCCcCC---CC-CCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCCCCEEEEEEEECCCCcccc
Confidence 589999999999765 56 78999999999999999999999999999999999999777779999999998531000
Q ss_pred C--C-CCCCCceeEEEEEEcccccCCCeEEEEEEeeecCCCCCccceEEEEEE
Q 002002 669 A--G-KPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLPGGAKKMGEIEIAV 718 (983)
Q Consensus 669 ~--~-~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~ 718 (983)
. . ....|++||.+.+++.++.... ..||+|......+ +..|+|.+.+
T Consensus 78 ~~~~~~~~~~~~iG~~~i~l~~~~~~~--~~w~~L~~~~~~~-~~~G~i~~~~ 127 (127)
T cd04027 78 LKQKFTRESDDFLGQTIIEVRTLSGEM--DVWYNLEKRTDKS-AVSGAIRLHI 127 (127)
T ss_pred cceeccccCCCcceEEEEEhHHccCCC--CeEEECccCCCCC-cEeEEEEEEC
Confidence 0 0 0015779999999999986544 7899998654332 3579998864
No 69
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.67 E-value=2.5e-16 Score=149.68 Aligned_cols=107 Identities=27% Similarity=0.528 Sum_probs=91.5
Q ss_pred CCcEEEEEEEEeeCCCCCCCC-CCCCeEEEEEEC-----CeEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEE
Q 002002 5 CNRKLIVEVCNAKNLMPKDGQ-GTASAYVIVDFD-----GQRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLY 78 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~~-g~~dPyv~v~~~-----~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~ 78 (983)
....|.|+|++|+||+++|.. |.+||||++.+. ..+++|+++++++||+|||+|.|.+... .+....|.|.||
T Consensus 13 ~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~-~l~~~~L~~~V~ 91 (125)
T cd08393 13 KLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVERE-ELPTRVLNLSVW 91 (125)
T ss_pred CCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHH-HhCCCEEEEEEE
Confidence 346899999999999999975 899999999994 2468999999999999999999998652 345679999999
Q ss_pred eCCCCCCCCCccEEEEEECccceecCCeeeEEEEce
Q 002002 79 NDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLE 114 (983)
Q Consensus 79 ~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~ 114 (983)
|.+..+ ++++||++.++|..+. .+.....||+|+
T Consensus 92 d~~~~~-~~~~iG~~~i~L~~~~-~~~~~~~W~~L~ 125 (125)
T cd08393 92 HRDSLG-RNSFLGEVEVDLGSWD-WSNTQPTWYPLQ 125 (125)
T ss_pred eCCCCC-CCcEeEEEEEecCccc-cCCCCcceEECc
Confidence 988776 8999999999999986 335667899984
No 70
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.66 E-value=3.2e-16 Score=148.15 Aligned_cols=100 Identities=25% Similarity=0.322 Sum_probs=87.7
Q ss_pred EEEEEEEceeccccccccCCCCCCCCCcEEEEEECC-----EEEEeeeecCCCCCeeceEEEEEEec----CCCEEEEEE
Q 002002 588 GLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP-----KWVRTRTILDRFNPRWNEQYTWDVYD----PCTVLTIGV 658 (983)
Q Consensus 588 g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~-----~~~rT~~~~~t~nP~Wne~~~~~v~~----~~~~l~i~v 658 (983)
|.|.|.|++|+||++++ .|.+||||++.+.+ .+.||+++++++||.|||+|.|++.. ....|.|+|
T Consensus 13 ~~L~V~Vi~A~~L~~~~-----~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V 87 (122)
T cd08381 13 GTLFVMVMHAKNLPLLD-----GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSV 87 (122)
T ss_pred CEEEEEEEEeeCCCCCC-----CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEE
Confidence 57999999999998773 57899999999963 47899999999999999999998722 345899999
Q ss_pred EeCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEe
Q 002002 659 FDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSL 700 (983)
Q Consensus 659 ~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 700 (983)
||++..+ +|++||++.|+|+++..+.....||+|
T Consensus 88 ~d~d~~~--------~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 88 WSHDSLV--------ENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred EeCCCCc--------CCcEEEEEEEeccccccCCCccceEEC
Confidence 9999987 678999999999999988777899987
No 71
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.66 E-value=7.2e-16 Score=145.62 Aligned_cols=112 Identities=28% Similarity=0.363 Sum_probs=95.7
Q ss_pred EEEEEceeccccccccCCCCCCCCCcEEEEEECC---EEEEeeeecCCCCCeeceEEEEEEecC-CCEEEEEEEeCCCCC
Q 002002 590 LEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP---KWVRTRTILDRFNPRWNEQYTWDVYDP-CTVLTIGVFDNGRYK 665 (983)
Q Consensus 590 L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~---~~~rT~~~~~t~nP~Wne~~~~~v~~~-~~~l~i~v~D~d~~~ 665 (983)
|.|+|++|++|+.. |. .|++||||++++++ ...||++++++.||+|||+|.|.+... ...|.|+|||++..+
T Consensus 2 L~V~vi~a~~L~~~---~~-~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~~ 77 (119)
T cd04036 2 LTVRVLRATNITKG---DL-LSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYVM 77 (119)
T ss_pred eEEEEEEeeCCCcc---CC-CCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCCC
Confidence 78999999999654 55 78999999999863 678999999999999999999998754 457999999998763
Q ss_pred CcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeeecCCCCCccceEEEEEEEE
Q 002002 666 RDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLPGGAKKMGEIEIAVRF 720 (983)
Q Consensus 666 ~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~f 720 (983)
|++||++.++++++..|.....||+|... +.|+|++++.+
T Consensus 78 ---------~~~iG~~~~~l~~l~~g~~~~~~~~L~~~------~~g~l~~~~~~ 117 (119)
T cd04036 78 ---------DDHLGTVLFDVSKLKLGEKVRVTFSLNPQ------GKEELEVEFLL 117 (119)
T ss_pred ---------CcccEEEEEEHHHCCCCCcEEEEEECCCC------CCceEEEEEEe
Confidence 56999999999999999888999998743 25888888755
No 72
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.66 E-value=6e-16 Score=149.16 Aligned_cols=106 Identities=23% Similarity=0.343 Sum_probs=89.8
Q ss_pred CcEEEEEEEEeeCCCCCC-CCCCCCeEEEEEECC-----eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEe
Q 002002 6 NRKLIVEVCNAKNLMPKD-GQGTASAYVIVDFDG-----QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYN 79 (983)
Q Consensus 6 ~~~L~V~v~~a~~L~~~d-~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~ 79 (983)
...|.|+|++|+||++++ ..|.+||||++++.. .+++|+++++++||+|||+|.|.+.. ....|.|+||+
T Consensus 28 ~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l----~~~~L~v~V~~ 103 (146)
T cd04028 28 KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVSP----TGKTLQVIVWG 103 (146)
T ss_pred CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEcC----CCCEEEEEEEe
Confidence 468999999999999875 568899999999942 37899999999999999999999973 37899999995
Q ss_pred -CCCCCCCCCccEEEEEECccceecCCeeeEEEEceecC
Q 002002 80 -DKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRS 117 (983)
Q Consensus 80 -~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~ 117 (983)
.+.+. +++|||++.|+|+.+. .+.....||+|.+..
T Consensus 104 d~~~~~-~~~~iG~~~i~L~~l~-~~~~~~~Wy~L~~~~ 140 (146)
T cd04028 104 DYGRMD-KKVFMGVAQILLDDLD-LSNLVIGWYKLFPTS 140 (146)
T ss_pred CCCCCC-CCceEEEEEEEccccc-CCCCceeEEecCCcc
Confidence 44554 8999999999999985 345678899998763
No 73
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.66 E-value=6.7e-16 Score=146.80 Aligned_cols=105 Identities=23% Similarity=0.347 Sum_probs=88.7
Q ss_pred CcEEEEEEEceeccccccccCCCCCCCCCcEEEEEECC-----EEEEeeeecCCCCCeeceEEEEEEec---CCCEEEEE
Q 002002 586 PIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP-----KWVRTRTILDRFNPRWNEQYTWDVYD---PCTVLTIG 657 (983)
Q Consensus 586 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~-----~~~rT~~~~~t~nP~Wne~~~~~v~~---~~~~l~i~ 657 (983)
..+.|.|+|++|+||+++ |...|.+||||.+.+.+ ...||+++++++||.|||.|.|++.. ....|.|+
T Consensus 13 ~~~~L~V~vi~a~~L~~~---d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~ 89 (125)
T cd08393 13 KLRELHVHVIQCQDLAAA---DPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLS 89 (125)
T ss_pred CCCEEEEEEEEeCCCCCc---CCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEE
Confidence 346899999999999887 43137899999999842 35799999999999999999999863 23589999
Q ss_pred EEeCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEee
Q 002002 658 VFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLT 701 (983)
Q Consensus 658 v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 701 (983)
|||++..+ ++++||.+.|+|.++..+.....||+|.
T Consensus 90 V~d~~~~~--------~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 125 (125)
T cd08393 90 VWHRDSLG--------RNSFLGEVEVDLGSWDWSNTQPTWYPLQ 125 (125)
T ss_pred EEeCCCCC--------CCcEeEEEEEecCccccCCCCcceEECc
Confidence 99999887 7789999999999998777778899873
No 74
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.66 E-value=4.1e-16 Score=148.30 Aligned_cols=108 Identities=24% Similarity=0.429 Sum_probs=92.4
Q ss_pred CCcEEEEEEEEeeCCCCCCCC-CCCCeEEEEEEC-----CeEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEE
Q 002002 5 CNRKLIVEVCNAKNLMPKDGQ-GTASAYVIVDFD-----GQRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLY 78 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~~-g~~dPyv~v~~~-----~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~ 78 (983)
....|.|+|++|+||++++.. |.+||||++++. ..++||+++++++||+|||+|.|.+.. ..+....|.|.||
T Consensus 13 ~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~-~~l~~~~L~v~V~ 91 (128)
T cd08392 13 RTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEA-DLLSSRQLQVSVW 91 (128)
T ss_pred CCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCH-HHhCCcEEEEEEE
Confidence 357899999999999999875 999999999994 247899999999999999999999865 3455679999999
Q ss_pred eCCCCCCCCCccEEEEEECccceec--CCeeeEEEEce
Q 002002 79 NDKKTGKRSTFLGKVKIAGSTFAKV--GSESSVYYPLE 114 (983)
Q Consensus 79 ~~~~~~~~d~~lG~~~i~l~~l~~~--~~~~~~w~~L~ 114 (983)
+.+..+ ++++||++.|+++++.-. ++....||+|.
T Consensus 92 ~~~~~~-~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l~ 128 (128)
T cd08392 92 HSRTLK-RRVFLGEVLIPLADWDFEDTDSQRFLWYPLN 128 (128)
T ss_pred eCCCCc-CcceEEEEEEEcCCcccCCCCccccceEECc
Confidence 988775 899999999999998633 45678999983
No 75
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.66 E-value=1.3e-15 Score=146.63 Aligned_cols=116 Identities=24% Similarity=0.452 Sum_probs=100.4
Q ss_pred CcEEEEEEEEeeCCCCCCCC----------CCCCeEEEEEECCeE-EeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEE
Q 002002 6 NRKLIVEVCNAKNLMPKDGQ----------GTASAYVIVDFDGQR-RRTKTKFRDLNPQWDERLEFLVHDAESMPTEILE 74 (983)
Q Consensus 6 ~~~L~V~v~~a~~L~~~d~~----------g~~dPyv~v~~~~~~-~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~ 74 (983)
.+.|+|+|++|++|.+.|.. |.+||||++.+++++ .+|+++++++||.|||+|.|.+.. ...|.
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~-----~~~l~ 77 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVHN-----GRNLE 77 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcCC-----CCEEE
Confidence 46899999999999988863 689999999999854 699999999999999999999963 57899
Q ss_pred EEEEeCCCCCCCCCccEEEEEECccceec-CCeeeEEEEceecCCcceeeeEEEEEEEEec
Q 002002 75 INLYNDKKTGKRSTFLGKVKIAGSTFAKV-GSESSVYYPLEKRSVFSQIKGEIGLKVYYID 134 (983)
Q Consensus 75 v~V~~~~~~~~~d~~lG~~~i~l~~l~~~-~~~~~~w~~L~~~~~~s~~~G~l~l~i~~~~ 134 (983)
|.||+++..+ ++++||++.++++++... +.....|++|++ .|+|++++.|..
T Consensus 78 ~~v~d~~~~~-~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~-------~G~l~l~~~~~~ 130 (132)
T cd04014 78 LTVFHDAAIG-PDDFVANCTISFEDLIQRGSGSFDLWVDLEP-------QGKLHVKIELKG 130 (132)
T ss_pred EEEEeCCCCC-CCceEEEEEEEhHHhcccCCCcccEEEEccC-------CcEEEEEEEEec
Confidence 9999877765 789999999999998853 566899999974 399999998864
No 76
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.66 E-value=4.3e-16 Score=143.02 Aligned_cols=100 Identities=17% Similarity=0.218 Sum_probs=84.3
Q ss_pred CCcEEEEEEEceeccccccccCCCCCCCCCcEEEEEECC----EEEEeeeecCCCCCeeceEEEEEEec---CCCEEEEE
Q 002002 585 SPIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP----KWVRTRTILDRFNPRWNEQYTWDVYD---PCTVLTIG 657 (983)
Q Consensus 585 ~~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~----~~~rT~~~~~t~nP~Wne~~~~~v~~---~~~~l~i~ 657 (983)
+..|.|.|+|++|++|+ + .|.+||||.+.+.. .+.+|++.++|+||+|||+|.|.|.. +...|.|.
T Consensus 11 ~~~~~L~V~vikA~~L~-~------~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~ 83 (118)
T cd08677 11 KQKAELHVNILEAENIS-V------DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLT 83 (118)
T ss_pred CcCCEEEEEEEEecCCC-C------CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEE
Confidence 45689999999999996 2 45699999999864 57799999999999999999999864 34589999
Q ss_pred EEeCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEE
Q 002002 658 VFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYS 699 (983)
Q Consensus 658 v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~ 699 (983)
|||+|+++ ++++||++.+++.++..+...++|..
T Consensus 84 V~d~Drfs--------~~d~IG~v~l~l~~~~~~~~~~~W~~ 117 (118)
T cd08677 84 LRCCDRFS--------RHSTLGELRLKLADVSMMLGAAQWVD 117 (118)
T ss_pred EEeCCCCC--------CCceEEEEEEccccccCCccccchhc
Confidence 99999998 78899999999998755544567754
No 77
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.66 E-value=7.6e-16 Score=143.68 Aligned_cols=102 Identities=19% Similarity=0.203 Sum_probs=86.9
Q ss_pred EEEEEEceeccccccccCCCCCCCCCcEEEEEE-C----C--EEEEeeeecCCCCCeeceEEEEEEecC----CCEEEEE
Q 002002 589 LLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKY-G----P--KWVRTRTILDRFNPRWNEQYTWDVYDP----CTVLTIG 657 (983)
Q Consensus 589 ~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~-~----~--~~~rT~~~~~t~nP~Wne~~~~~v~~~----~~~l~i~ 657 (983)
.|.|+|++|++|+.. + .|.+||||++++ | . ++.+|+++.+++||+|||.|+|.+... ...|.|.
T Consensus 1 kL~V~Vi~A~~L~~~---d--~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~ 75 (120)
T cd08395 1 KVTVKVVAANDLKWQ---T--TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHIC 75 (120)
T ss_pred CEEEEEEECcCCCcc---c--CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEE
Confidence 388999999999764 3 589999999997 3 2 357999999999999999999999732 2469999
Q ss_pred EEeCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeeec
Q 002002 658 VFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVL 703 (983)
Q Consensus 658 v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 703 (983)
|||++..+ +|++||++.++|+++..+.....|++|...
T Consensus 76 V~D~d~~~--------~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~ 113 (120)
T cd08395 76 VKDYCFAR--------DDRLVGVTVLQLRDIAQAGSCACWLPLGRR 113 (120)
T ss_pred EEEecccC--------CCCEEEEEEEEHHHCcCCCcEEEEEECcCc
Confidence 99999765 688999999999999988888899999743
No 78
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.65 E-value=6.4e-16 Score=150.05 Aligned_cols=115 Identities=23% Similarity=0.310 Sum_probs=93.7
Q ss_pred EEEEEceeccccccccCCCCCCCCCcEEEEEECC-----EEEEeeeecCCCCCeeceEEEEEEe---------------c
Q 002002 590 LEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP-----KWVRTRTILDRFNPRWNEQYTWDVY---------------D 649 (983)
Q Consensus 590 L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~-----~~~rT~~~~~t~nP~Wne~~~~~v~---------------~ 649 (983)
|.|+|++|+||++ . .|.+||||++.+.+ ...||+++++|+||+|||.|.|++. +
T Consensus 2 L~V~Vi~ArnL~~-----~-~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~ 75 (148)
T cd04010 2 LSVRVIECSDLAL-----K-NGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEED 75 (148)
T ss_pred EEEEEEeCcCCCC-----C-CCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCccc
Confidence 7899999999975 2 78999999999965 5779999999999999999999995 1
Q ss_pred CC-CEEEEEEEeCCCCCCcCCCCCCCCceeEEEEEEcccccCC-CeEEEEEEeeecCCCC---------CccceEEEEEE
Q 002002 650 PC-TVLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTN-RVYLNSYSLTVLLPGG---------AKKMGEIEIAV 718 (983)
Q Consensus 650 ~~-~~l~i~v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~-~~~~~~~~L~~~~~~g---------~~~~G~l~l~~ 718 (983)
.. ..|.|.|||++..+ .|++||++.|+|..+..+ .....||+|....... ....|.|++.+
T Consensus 76 ~~~~~L~i~V~d~~~~~--------~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (148)
T cd04010 76 AEKLELRVDLWHASMGG--------GDVFLGEVRIPLRGLDLQAGSHQAWYFLQPREEKSTPPGTRSSKDNSLGSLRLKI 147 (148)
T ss_pred ccEEEEEEEEEcCCCCC--------CCceeEEEEEecccccccCCcCcceeecCCcccccCCCCCcccccCCcccEEEec
Confidence 12 47999999999876 688999999999999876 5568999997653211 12357788765
No 79
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.65 E-value=6.4e-16 Score=146.75 Aligned_cols=107 Identities=26% Similarity=0.442 Sum_probs=91.4
Q ss_pred CCcEEEEEEEEeeCCCCCCC-CCCCCeEEEEEEC-----CeEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEE
Q 002002 5 CNRKLIVEVCNAKNLMPKDG-QGTASAYVIVDFD-----GQRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLY 78 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~-~g~~dPyv~v~~~-----~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~ 78 (983)
..+.|.|+|++|+||++++. .|.+||||++++. ..+++|+++++++||.|||+|.|.+... .+....|.|.||
T Consensus 13 ~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~-~l~~~~L~~~V~ 91 (125)
T cd04029 13 KTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHS-QLETRTLQLSVW 91 (125)
T ss_pred CCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHH-HhCCCEEEEEEE
Confidence 45789999999999999876 4799999999994 2468999999999999999999998652 344678999999
Q ss_pred eCCCCCCCCCccEEEEEECccceecCCeeeEEEEce
Q 002002 79 NDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLE 114 (983)
Q Consensus 79 ~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~ 114 (983)
|.+..+ ++++||++.+++..+. .......||+|.
T Consensus 92 d~~~~~-~~~~lG~~~i~l~~~~-~~~~~~~w~~l~ 125 (125)
T cd04029 92 HYDRFG-RNTFLGEVEIPLDSWN-FDSQHEECLPLH 125 (125)
T ss_pred ECCCCC-CCcEEEEEEEeCCccc-ccCCcccEEECc
Confidence 988876 8999999999999987 346688999984
No 80
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.65 E-value=1.2e-15 Score=145.25 Aligned_cols=104 Identities=21% Similarity=0.363 Sum_probs=91.0
Q ss_pred CcEEEEEEEceeccccccccCCCCCCCCCcEEEEEEC---CEEEEeeeecCCCCCeeceEEEEEEecC---CCEEEEEEE
Q 002002 586 PIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYG---PKWVRTRTILDRFNPRWNEQYTWDVYDP---CTVLTIGVF 659 (983)
Q Consensus 586 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~---~~~~rT~~~~~t~nP~Wne~~~~~v~~~---~~~l~i~v~ 659 (983)
..|.|.|+|++|+||+++ |. .|.+||||.+.+. ....||+++++++||.|||.|.|.+... ...|.|+||
T Consensus 14 ~~~~L~V~v~~a~~L~~~---d~-~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~ 89 (124)
T cd08387 14 DMGILNVKLIQARNLQPR---DF-SGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLY 89 (124)
T ss_pred CCCEEEEEEEEeeCCCCC---CC-CCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEE
Confidence 457899999999999765 56 7899999999984 3568999999999999999999998643 458999999
Q ss_pred eCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEee
Q 002002 660 DNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLT 701 (983)
Q Consensus 660 D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 701 (983)
|++..+ +|++||++.|+|+++..+...+.||+|.
T Consensus 90 d~~~~~--------~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 90 DFDQFS--------RDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred ECCCCC--------CCceeEEEEEecccccCCCCcceEEECc
Confidence 999887 6889999999999998777889999885
No 81
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.65 E-value=5.3e-16 Score=146.08 Aligned_cols=107 Identities=19% Similarity=0.247 Sum_probs=92.9
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEEC--C----eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEE
Q 002002 5 CNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFD--G----QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLY 78 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~--~----~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~ 78 (983)
....|.|+|++|+||++.+..|.+||||++.+- . .+++|+++++++||+|||+|.|.+.. +++....|.|.||
T Consensus 12 ~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~-~~L~~~~L~~~V~ 90 (124)
T cd08680 12 GDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISS-TKLYQKTLQVDVC 90 (124)
T ss_pred CCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCH-HHhhcCEEEEEEE
Confidence 457899999999999999988999999999983 2 47899999999999999999999865 4567899999999
Q ss_pred eCCCCCCCCCccEEEEEECccceecCCeeeEEEEc
Q 002002 79 NDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPL 113 (983)
Q Consensus 79 ~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L 113 (983)
+.+..+ ++++||++.|+++++...+.....||+|
T Consensus 91 ~~~~~~-~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 91 SVGPDQ-QEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred eCCCCC-ceeEEEEEEEEhhhccCCCccccccccC
Confidence 988775 8999999999999986444557789876
No 82
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.65 E-value=6.4e-16 Score=143.58 Aligned_cols=102 Identities=25% Similarity=0.408 Sum_probs=89.0
Q ss_pred EEEEEceeccccccccCCCCCCCCCcEEEEEECCEEEEeeeecCCCCCee-ceEEEEEEecC---CCEEEEEEEeCCCCC
Q 002002 590 LEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILDRFNPRW-NEQYTWDVYDP---CTVLTIGVFDNGRYK 665 (983)
Q Consensus 590 L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~~~~rT~~~~~t~nP~W-ne~~~~~v~~~---~~~l~i~v~D~d~~~ 665 (983)
|.|+|++|+||+.++. . .|.+||||++++++...||+++.+++||.| ||.|.|.+... ...|.|+|||++..+
T Consensus 1 l~V~v~~a~~L~~~d~--~-~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~ 77 (110)
T cd08688 1 LKVRVVAARDLPVMDR--S-SDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYS 77 (110)
T ss_pred CEEEEEEEECCCcccc--C-CCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCC
Confidence 5799999999987631 2 578999999999999999999999999999 99999999753 368999999999987
Q ss_pred CcCCCCCCCCceeEEEEEEcccccC---CCeEEEEEEeee
Q 002002 666 RDEAGKPGKDVRVGKIRVRLSTLDT---NRVYLNSYSLTV 702 (983)
Q Consensus 666 ~~~~~~~~~d~~lG~~~i~l~~l~~---~~~~~~~~~L~~ 702 (983)
+|++||++.+++.++.. +..+..||+|.+
T Consensus 78 --------~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 78 --------ANDAIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred --------CCCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 67899999999999976 455788999863
No 83
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.65 E-value=6.4e-16 Score=145.19 Aligned_cols=105 Identities=28% Similarity=0.411 Sum_probs=89.1
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEECC-----eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEe
Q 002002 5 CNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFDG-----QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYN 79 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~ 79 (983)
....|.|+|++|+||++++ .|.+||||++++.. .+++|+++++++||.|||+|.|.+.... + ...|.|.||+
T Consensus 10 ~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~-~-~~~l~v~V~~ 86 (119)
T cd08685 10 QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERD-Y-QKRLLVTVWN 86 (119)
T ss_pred cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHH-h-CCEEEEEEEC
Confidence 3578999999999999998 78999999999953 4678999999999999999999986532 2 3468899998
Q ss_pred CCCCCCCCCccEEEEEECccceecCCeeeEEEEc
Q 002002 80 DKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPL 113 (983)
Q Consensus 80 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L 113 (983)
.+....++++||++.|++.++. .++....||.|
T Consensus 87 ~~~~~~~~~~lG~~~i~l~~~~-~~~~~~~Wy~l 119 (119)
T cd08685 87 KLSKSRDSGLLGCMSFGVKSIV-NQKEISGWYYL 119 (119)
T ss_pred CCCCcCCCEEEEEEEecHHHhc-cCccccceEeC
Confidence 7766435789999999999998 56777899986
No 84
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.65 E-value=7.5e-16 Score=143.12 Aligned_cols=105 Identities=29% Similarity=0.415 Sum_probs=91.5
Q ss_pred EEEEEEEeeCCCCCCC-CCCCCeEEEEEECCeEEeeeCcCCCCCCee-eeEEEEEeeecCCCCCceEEEEEEeCCCCCCC
Q 002002 9 LIVEVCNAKNLMPKDG-QGTASAYVIVDFDGQRRRTKTKFRDLNPQW-DERLEFLVHDAESMPTEILEINLYNDKKTGKR 86 (983)
Q Consensus 9 L~V~v~~a~~L~~~d~-~g~~dPyv~v~~~~~~~~T~~~~~t~nP~W-nE~f~f~v~~~~~l~~~~L~v~V~~~~~~~~~ 86 (983)
|.|+|++|++|+.++. .|.+||||++.+++++++|+++++++||.| ||+|.|.+.... +....|.|+|||.+..+ +
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~-l~~~~l~i~V~d~d~~~-~ 78 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEE-LQDEPLQIRVMDHDTYS-A 78 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHH-cCCCeEEEEEEeCCCCC-C
Confidence 6899999999999884 689999999999999999999999999999 999999997642 33578999999988776 8
Q ss_pred CCccEEEEEECccceec--CCeeeEEEEcee
Q 002002 87 STFLGKVKIAGSTFAKV--GSESSVYYPLEK 115 (983)
Q Consensus 87 d~~lG~~~i~l~~l~~~--~~~~~~w~~L~~ 115 (983)
+++||++.+++..+... +.....||+|.+
T Consensus 79 ~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 79 NDAIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred CCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 89999999999999842 345788999864
No 85
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=99.64 E-value=1.6e-15 Score=169.41 Aligned_cols=253 Identities=20% Similarity=0.265 Sum_probs=174.6
Q ss_pred eEEEeeeeeeccCCCCCCCCcccceEEEEecCCCCCcEEEEEEeCc-------CCceeEEEEEecccccccccCCCCCcc
Q 002002 463 QLFKTGRTSVGLSPSSSANPTWNEDLVFVAAEPFEPFLVVTVEDVT-------NGCSVGHARIQMSTVERRIDDRAEPKS 535 (983)
Q Consensus 463 ~~~rT~~~~~~~~~~~t~nP~wne~f~f~~~~~~~~~L~i~V~D~d-------~d~~lG~~~i~L~~l~~~~~~~~~~~~ 535 (983)
+..||..+. +.+||.|.+.|.+.+.++..+.|++.++|.+ ..+|+|++.+.++.+...... .
T Consensus 41 e~~rte~i~------~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~-----~ 109 (529)
T KOG1327|consen 41 EVGRTEVIR------NVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGL-----T 109 (529)
T ss_pred cccceeeee------ccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhh-----h
Confidence 344888875 5899999999999999899999999999877 579999999999998754211 1
Q ss_pred eEEeccCCCCCCcceEEEEEEEEeccccccccccccCCchhHHHHhhccCCcEEEEEEEceeccccccccCCCCCCCCCc
Q 002002 536 RWFNLVGDETRPYAGRIHLRACLEGGYHVLDEAAHVTSDVRAAAKQLAKSPIGLLEVGIRGATNLLPVKTKDGTRGTTDA 615 (983)
Q Consensus 536 ~w~~L~~~~~~~~~G~l~l~i~l~g~~~v~~~~~~~~~d~~~~~~~l~~~~~g~L~v~v~~a~~L~~~~~~d~~~g~sDp 615 (983)
.-+.++... ....|.|.+.+ ++..+ . ....+ -.++|.+| +++|. ++++||
T Consensus 110 ~~l~~~~~~-~~~~g~iti~a--ee~~~---------~-------------~~~~~-~~~~~~~l---d~kd~-f~ksd~ 159 (529)
T KOG1327|consen 110 GPLLLKPGK-NAGSGTITISA--EEDES---------D-------------NDVVQ-FSFRAKNL---DPKDF-FSKSDP 159 (529)
T ss_pred hhhhcccCc-cCCcccEEEEe--ecccc---------c-------------Cceee-eeeeeeec---Ccccc-cccCCc
Confidence 112222211 11245554442 21110 0 00111 22568899 77788 999999
Q ss_pred EEEEEE--CC----EEEEeeeecCCCCCeeceEEEEEEe-----cCCCEEEEEEEeCCCCCCcCCCCCCCCceeEEEEEE
Q 002002 616 YVVAKY--GP----KWVRTRTILDRFNPRWNEQYTWDVY-----DPCTVLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVR 684 (983)
Q Consensus 616 y~~~~~--~~----~~~rT~~~~~t~nP~Wne~~~~~v~-----~~~~~l~i~v~D~d~~~~~~~~~~~~d~~lG~~~i~ 684 (983)
|..+.- +. ...+|.++++++||.| ..|.++.. ++...+.|.|||++..+ +|++||++..+
T Consensus 160 ~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w-~~~~i~~~~l~~~~~~~~~~i~~~d~~~~~--------~~~~ig~~~tt 230 (529)
T KOG1327|consen 160 YLEFYKRVDDGSTQMLYRTEVVKNTLNPQW-APFSISLQSLCSKDGNRPIQIECYDYDSNG--------KHDLIGKFQTT 230 (529)
T ss_pred ceEEEEecCCCceeeccccceeccCCCCcc-cccccchhhhcccCCCCceEEEEeccCCCC--------CcCceeEeccc
Confidence 998864 22 3459999999999999 44776664 44568999999999987 77899999999
Q ss_pred cccccC-CCeEEEEEEeeecCCCC----CccceEEEE-------------------EEEEEecChHHHHHHhcCCCCC-c
Q 002002 685 LSTLDT-NRVYLNSYSLTVLLPGG----AKKMGEIEI-------------------AVRFTCSSWLNLIQAYATPMLP-R 739 (983)
Q Consensus 685 l~~l~~-~~~~~~~~~L~~~~~~g----~~~~G~l~l-------------------~~~f~~~~~~~~~~~~~~p~~p-~ 739 (983)
++++.. +. ...+++.....+. .+.+|.+.+ ++.|+.. +|+.++|+.|..| +
T Consensus 231 ~~~~~~~~~--~~~~~~~~~~~~~~~k~~k~~g~~~l~~~~~~~~~sfld~i~gg~~lnf~vg--IDfTaSNg~p~~~sS 306 (529)
T KOG1327|consen 231 LSELQEPGS--PNQIMLINPKKKAKKKSYKNSGQLILDRFTSLDQYSFLDYIAGGEQLNFTVG--IDFTASNGDPRNPSS 306 (529)
T ss_pred HHHhcccCC--cccccccChhhhhhhhcccccceEEehheeehhhhhHHHHHccCceeeeEEE--EEEeccCCCCCCCCc
Confidence 999863 22 2223333322211 122455442 1222211 4666899999888 9
Q ss_pred ccccCCCChhhHHHHHHHHHHHHHHHhhcCCCCChHHHHHhhcCCCcce
Q 002002 740 MHYVRPLGPAQQDILRHTAMRIVTARLARSEPPLGQEVVQFMLDTDTHV 788 (983)
Q Consensus 740 ~hy~~p~~~~q~~~l~~~a~~~v~~~l~~~~p~l~~~vv~~~~d~~~~~ 788 (983)
+||++|..+|+| .+|+ ++|++.+++||+++
T Consensus 307 LHyi~p~~~N~Y----~~Ai---------------~~vG~~lq~ydsdk 336 (529)
T KOG1327|consen 307 LHYIDPHQPNPY----EQAI---------------RSVGETLQDYDSDK 336 (529)
T ss_pred ceecCCCCCCHH----HHHH---------------HHHhhhhcccCCCC
Confidence 999999999999 7788 67899999998876
No 86
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.64 E-value=1.6e-15 Score=144.63 Aligned_cols=120 Identities=23% Similarity=0.361 Sum_probs=98.9
Q ss_pred cEEEEEEEEeeCCCCCC-CCCCCCeEEEEEECC--eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCC
Q 002002 7 RKLIVEVCNAKNLMPKD-GQGTASAYVIVDFDG--QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKT 83 (983)
Q Consensus 7 ~~L~V~v~~a~~L~~~d-~~g~~dPyv~v~~~~--~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~ 83 (983)
+.|.|+|++|++|+..+ ..|.+||||++++++ +.++|+++.+++||.|||.|.|.+... ...|.|+|||.+..
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~----~~~l~~~v~d~~~~ 77 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSL----TEPLNLTVYDFNDK 77 (124)
T ss_pred eEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCC----CCEEEEEEEecCCC
Confidence 47999999999999755 456799999999987 789999999999999999999998743 67999999988877
Q ss_pred CCCCCccEEEEEECccceecCCeeeEEEEceecCCcceeeeEEEEEEEEec
Q 002002 84 GKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQIKGEIGLKVYYID 134 (983)
Q Consensus 84 ~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~s~~~G~l~l~i~~~~ 134 (983)
+ +|++||++.+++.++...+.....|+.|... .+..|+|++.+.|.+
T Consensus 78 ~-~d~~iG~~~~~l~~l~~~~~~~~~~~~~~~~---~k~~G~i~~~l~~~p 124 (124)
T cd04044 78 R-KDKLIGTAEFDLSSLLQNPEQENLTKNLLRN---GKPVGELNYDLRFFP 124 (124)
T ss_pred C-CCceeEEEEEEHHHhccCccccCcchhhhcC---CccceEEEEEEEeCC
Confidence 5 8999999999999998443333345556532 235799999999863
No 87
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.64 E-value=1.4e-15 Score=141.00 Aligned_cols=99 Identities=20% Similarity=0.225 Sum_probs=86.5
Q ss_pred EEEEEEEceeccccccccCCCCCCCCCcEEEEEECCEEEEeeeecCCCCCeeceEEEEEEecCCCEEEEEEEeCCCCCCc
Q 002002 588 GLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILDRFNPRWNEQYTWDVYDPCTVLTIGVFDNGRYKRD 667 (983)
Q Consensus 588 g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~~~~rT~~~~~t~nP~Wne~~~~~v~~~~~~l~i~v~D~d~~~~~ 667 (983)
|.|.|+|++|++|+. .+..||||++++|+.+.+|++++++ ||.|||+|.|.+.++...|.|+|||++..
T Consensus 2 ~~L~V~Vv~Ar~L~~-------~~~~dPYV~Ik~g~~k~kT~v~~~~-nP~WnE~F~F~~~~~~~~L~v~V~dkd~~--- 70 (127)
T cd08394 2 SLLCVLVKKAKLDGA-------PDKFNTYVTLKVQNVKSTTIAVRGS-QPCWEQDFMFEINRLDLGLVIELWNKGLI--- 70 (127)
T ss_pred ceEEEEEEEeeCCCC-------CCCCCCeEEEEECCEEeEeeECCCC-CCceeeEEEEEEcCCCCEEEEEEEeCCCc---
Confidence 689999999999943 3456999999999999999999885 99999999999988888899999999864
Q ss_pred CCCCCCCCceeEEEEEEcccccCCCeE--EEEEEeeec
Q 002002 668 EAGKPGKDVRVGKIRVRLSTLDTNRVY--LNSYSLTVL 703 (983)
Q Consensus 668 ~~~~~~~d~~lG~~~i~l~~l~~~~~~--~~~~~L~~~ 703 (983)
.|++||++.|+|+++..+... ..||+|...
T Consensus 71 ------~DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~~~ 102 (127)
T cd08394 71 ------WDTLVGTVWIPLSTIRQSNEEGPGEWLTLDSE 102 (127)
T ss_pred ------CCCceEEEEEEhHHcccCCCCCCCccEecChH
Confidence 477999999999998865544 789999854
No 88
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.64 E-value=3.1e-15 Score=143.01 Aligned_cols=118 Identities=21% Similarity=0.390 Sum_probs=100.6
Q ss_pred cEEEEEEEEeeCCCCCCCCCCCCeEEEEEECC---eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCC
Q 002002 7 RKLIVEVCNAKNLMPKDGQGTASAYVIVDFDG---QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKT 83 (983)
Q Consensus 7 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~---~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~ 83 (983)
+.|.|+|++|++|+..+..|.+||||++.+++ ..++|+++++++||.|||+|.|.+.... ...|.|.||+.+..
T Consensus 1 ~~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~---~~~L~i~v~d~d~~ 77 (126)
T cd04043 1 HLFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGE---PLWISATVWDRSFV 77 (126)
T ss_pred CEEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCC---CCEEEEEEEECCCC
Confidence 47899999999999999999999999999864 4689999999999999999999997642 57899999988877
Q ss_pred CCCCCccEEEEEECcccee-c-CCeeeEEEEceecCCcceeeeEEEEEEEEecC
Q 002002 84 GKRSTFLGKVKIAGSTFAK-V-GSESSVYYPLEKRSVFSQIKGEIGLKVYYIDE 135 (983)
Q Consensus 84 ~~~d~~lG~~~i~l~~l~~-~-~~~~~~w~~L~~~~~~s~~~G~l~l~i~~~~~ 135 (983)
+ ++++||++.++++.+.. . +.....|++|.+ .|+|++++.+..+
T Consensus 78 ~-~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~~-------~g~i~l~~~~~~~ 123 (126)
T cd04043 78 G-KHDLCGRASLKLDPKRFGDDGLPREIWLDLDT-------QGRLLLRVSMEGE 123 (126)
T ss_pred C-CCceEEEEEEecCHHHcCCCCCCceEEEEcCC-------CCeEEEEEEEeee
Confidence 5 89999999999987642 2 456779999975 3999999988653
No 89
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.64 E-value=3.2e-15 Score=143.99 Aligned_cols=119 Identities=21% Similarity=0.265 Sum_probs=99.3
Q ss_pred cEEEEEEEceeccccccccCC---C---CCCCCCcEEEEEECCEE-EEeeeecCCCCCeeceEEEEEEecCCCEEEEEEE
Q 002002 587 IGLLEVGIRGATNLLPVKTKD---G---TRGTTDAYVVAKYGPKW-VRTRTILDRFNPRWNEQYTWDVYDPCTVLTIGVF 659 (983)
Q Consensus 587 ~g~L~v~v~~a~~L~~~~~~d---~---~~g~sDpy~~~~~~~~~-~rT~~~~~t~nP~Wne~~~~~v~~~~~~l~i~v~ 659 (983)
.|.|+|+|++|+||...+... . ..|.+||||++.++++. .+|+++.+++||.|||+|.|.+. ....|.|.||
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~-~~~~l~~~v~ 81 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVH-NGRNLELTVF 81 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcC-CCCEEEEEEE
Confidence 589999999999997653210 0 02689999999999855 69999999999999999999996 4578999999
Q ss_pred eCCCCCCcCCCCCCCCceeEEEEEEcccccC--CCeEEEEEEeeecCCCCCccceEEEEEEEEEe
Q 002002 660 DNGRYKRDEAGKPGKDVRVGKIRVRLSTLDT--NRVYLNSYSLTVLLPGGAKKMGEIEIAVRFTC 722 (983)
Q Consensus 660 D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~--~~~~~~~~~L~~~~~~g~~~~G~l~l~~~f~~ 722 (983)
|++..+ +|++||++.++|+++.. +.....||+|. +.|.|++.+.|..
T Consensus 82 d~~~~~--------~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~--------~~G~l~l~~~~~~ 130 (132)
T cd04014 82 HDAAIG--------PDDFVANCTISFEDLIQRGSGSFDLWVDLE--------PQGKLHVKIELKG 130 (132)
T ss_pred eCCCCC--------CCceEEEEEEEhHHhcccCCCcccEEEEcc--------CCcEEEEEEEEec
Confidence 999877 67899999999999886 56678999986 2499999998863
No 90
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.64 E-value=1.4e-15 Score=145.06 Aligned_cols=110 Identities=19% Similarity=0.274 Sum_probs=91.4
Q ss_pred CCcEEEEEEEEeeCCCCCCCC-CCCCeEEEEEEC---CeEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeC
Q 002002 5 CNRKLIVEVCNAKNLMPKDGQ-GTASAYVIVDFD---GQRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYND 80 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~~-g~~dPyv~v~~~---~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~ 80 (983)
....|.|+|++|+||++.+.. |.+||||++.+. ++++||+++++++||.|||+|.|.......+....|.+.||+.
T Consensus 14 ~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~ 93 (128)
T cd08388 14 EKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSF 93 (128)
T ss_pred CCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEc
Confidence 457899999999999999886 899999999984 3678999999999999999999943332333456899999998
Q ss_pred CCCCCCCCccEEEEEECccceec-CCeeeEEEEcee
Q 002002 81 KKTGKRSTFLGKVKIAGSTFAKV-GSESSVYYPLEK 115 (983)
Q Consensus 81 ~~~~~~d~~lG~~~i~l~~l~~~-~~~~~~w~~L~~ 115 (983)
+.++ ++++||++.+++..+... ++....|++|++
T Consensus 94 d~~~-~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~~ 128 (128)
T cd08388 94 DRYS-RDDVIGEVVCPLAGADLLNEGELLVSREIQP 128 (128)
T ss_pred CCCC-CCceeEEEEEeccccCCCCCceEEEEEeccC
Confidence 8876 899999999999998633 466888998863
No 91
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.64 E-value=3.6e-15 Score=142.61 Aligned_cols=117 Identities=26% Similarity=0.386 Sum_probs=100.5
Q ss_pred EEEeeCCCCCCCCCCCCeEEEEEECCeEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCCCCCCccEE
Q 002002 13 VCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKTGKRSTFLGK 92 (983)
Q Consensus 13 v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~~~d~~lG~ 92 (983)
|++|++|+. ..|.+||||+|.+++.+++|++++++.||.|||+|.|.+..+. .....|.|+||+.+..+ ++++||+
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~-~~~~~l~~~v~d~~~~~-~d~~iG~ 77 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSP-DPDESLEIVVKDYEKVG-RNRLIGS 77 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCc-CCCCEEEEEEEECCCCC-CCceEEE
Confidence 689999998 5789999999999999999999999999999999999996531 23689999999988775 8899999
Q ss_pred EEEECccceecCCeeeEEEEceecCCcceeeeEEEEEEEEecC
Q 002002 93 VKIAGSTFAKVGSESSVYYPLEKRSVFSQIKGEIGLKVYYIDE 135 (983)
Q Consensus 93 ~~i~l~~l~~~~~~~~~w~~L~~~~~~s~~~G~l~l~i~~~~~ 135 (983)
+.++++++. .+.....|++|.+.... ...|+|++.+.|.+.
T Consensus 78 ~~~~l~~l~-~~~~~~~~~~L~~~~~~-~~~~~l~l~~~~~~~ 118 (127)
T cd08373 78 ATVSLQDLV-SEGLLEVTEPLLDSNGR-PTGATISLEVSYQPP 118 (127)
T ss_pred EEEEhhHcc-cCCceEEEEeCcCCCCC-cccEEEEEEEEEeCC
Confidence 999999988 55678889999866543 357999999999853
No 92
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.63 E-value=3.9e-15 Score=142.33 Aligned_cols=114 Identities=21% Similarity=0.289 Sum_probs=98.5
Q ss_pred EceeccccccccCCCCCCCCCcEEEEEECCEEEEeeeecCCCCCeeceEEEEEEecC---CCEEEEEEEeCCCCCCcCCC
Q 002002 594 IRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILDRFNPRWNEQYTWDVYDP---CTVLTIGVFDNGRYKRDEAG 670 (983)
Q Consensus 594 v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~~~~rT~~~~~t~nP~Wne~~~~~v~~~---~~~l~i~v~D~d~~~~~~~~ 670 (983)
|++|++|+. . .|++||||++.+++...+|++++++.||+|||.|.|++..+ ...|.|+|||++..+
T Consensus 2 vi~a~~L~~-----~-~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~----- 70 (127)
T cd08373 2 VVSLKNLPG-----L-KGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVG----- 70 (127)
T ss_pred eEEeeCCcc-----c-CCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCC-----
Confidence 678999964 3 78999999999999999999999999999999999999754 569999999999887
Q ss_pred CCCCCceeEEEEEEcccccCCCeEEEEEEeeecCCCCCccceEEEEEEEEEec
Q 002002 671 KPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLPGGAKKMGEIEIAVRFTCS 723 (983)
Q Consensus 671 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~f~~~ 723 (983)
+|++||++.++|+++..+.....|++|.... +....|+|++++.|.+.
T Consensus 71 ---~d~~iG~~~~~l~~l~~~~~~~~~~~L~~~~--~~~~~~~l~l~~~~~~~ 118 (127)
T cd08373 71 ---RNRLIGSATVSLQDLVSEGLLEVTEPLLDSN--GRPTGATISLEVSYQPP 118 (127)
T ss_pred ---CCceEEEEEEEhhHcccCCceEEEEeCcCCC--CCcccEEEEEEEEEeCC
Confidence 6789999999999999888888999997543 22235999999999753
No 93
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.63 E-value=2.5e-15 Score=142.54 Aligned_cols=118 Identities=20% Similarity=0.317 Sum_probs=95.4
Q ss_pred EEEEEceeccccccccCCCCCCCCCcEEEEEEC-CEEEEeeeecCCCCCeeceEEEEEEecCCCEEEEEEEeCCCCCCcC
Q 002002 590 LEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYG-PKWVRTRTILDRFNPRWNEQYTWDVYDPCTVLTIGVFDNGRYKRDE 668 (983)
Q Consensus 590 L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~-~~~~rT~~~~~t~nP~Wne~~~~~v~~~~~~l~i~v~D~d~~~~~~ 668 (983)
|+|+|++|++|+.+ |. .|.+||||++.++ ....||+++++++||.|||.|.|.+.. ...|.|+|||++..+.
T Consensus 2 l~v~v~~A~~L~~~---~~-~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~l~i~V~d~~~~~~-- 74 (123)
T cd08382 2 VRLTVLCADGLAKR---DL-FRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP-SSIITIQVFDQKKFKK-- 74 (123)
T ss_pred eEEEEEEecCCCcc---CC-CCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC-CCEEEEEEEECCCCCC--
Confidence 78999999999665 56 7899999999996 678899999999999999999999965 7799999999998761
Q ss_pred CCCCCCCceeEEEEEEcccccCCCeE-EEEEEeeecCCCC-CccceEEEEEE
Q 002002 669 AGKPGKDVRVGKIRVRLSTLDTNRVY-LNSYSLTVLLPGG-AKKMGEIEIAV 718 (983)
Q Consensus 669 ~~~~~~d~~lG~~~i~l~~l~~~~~~-~~~~~L~~~~~~g-~~~~G~l~l~~ 718 (983)
..|++||++.+++.++...... ..||+|....... ....|+|.+.+
T Consensus 75 ----~~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 75 ----KDQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred ----CCCceEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence 0257999999999998754322 5689997654321 23368888765
No 94
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.63 E-value=4.9e-15 Score=142.28 Aligned_cols=123 Identities=19% Similarity=0.306 Sum_probs=101.4
Q ss_pred cEEEEEEEceeccccccccCCCCCCCCCcEEEEEECCEE-EEeeeecCCCCCeeceEEEEEEecCCCEEEEEEEeCCCCC
Q 002002 587 IGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKW-VRTRTILDRFNPRWNEQYTWDVYDPCTVLTIGVFDNGRYK 665 (983)
Q Consensus 587 ~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~~~-~rT~~~~~t~nP~Wne~~~~~v~~~~~~l~i~v~D~d~~~ 665 (983)
...|.|.|++|+||+++ .||||.+.+++.. .||+++.++.||.|+|.|.|+...+...|+|.||+.+...
T Consensus 10 ~~sL~v~V~EAk~Lp~~---------~~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~ 80 (146)
T cd04013 10 ENSLKLWIIEAKGLPPK---------KRYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKK 80 (146)
T ss_pred EEEEEEEEEEccCCCCc---------CCceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCcc
Confidence 35799999999999765 2799999999866 5999999999999999999987777789999998765432
Q ss_pred CcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeeecCCCC-------CccceEEEEEEEEEe
Q 002002 666 RDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLPGG-------AKKMGEIEIAVRFTC 722 (983)
Q Consensus 666 ~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g-------~~~~G~l~l~~~f~~ 722 (983)
+...+|.+||++.|++.++..+...+.||||....... .+..|.|++.++|..
T Consensus 81 ----~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~ 140 (146)
T cd04013 81 ----KKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQS 140 (146)
T ss_pred ----ccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEE
Confidence 00115779999999999999999999999999875443 234579999999974
No 95
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.63 E-value=1.4e-15 Score=145.13 Aligned_cols=107 Identities=31% Similarity=0.555 Sum_probs=90.7
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEECC-----eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEe
Q 002002 5 CNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFDG-----QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYN 79 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~ 79 (983)
..+.|.|+|++|++|...+..+.+||||+|.+.+ .+++|+++++++||.|||+|.|.+....++....|.|+|||
T Consensus 14 ~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d 93 (125)
T cd04031 14 VTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWD 93 (125)
T ss_pred CCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEe
Confidence 3578999999999999999889999999999954 57899999999999999999998755333446789999999
Q ss_pred CCCCCCCCCccEEEEEECccceecCCeeeEEEEce
Q 002002 80 DKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLE 114 (983)
Q Consensus 80 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~ 114 (983)
.+..+ ++++||++.+++.+... .....||+|+
T Consensus 94 ~~~~~-~~~~iG~~~i~l~~~~~--~~~~~W~~L~ 125 (125)
T cd04031 94 YDRDG-ENDFLGEVVIDLADALL--DDEPHWYPLQ 125 (125)
T ss_pred CCCCC-CCcEeeEEEEecccccc--cCCcceEECc
Confidence 88775 89999999999998332 3346899985
No 96
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.63 E-value=3.2e-15 Score=142.41 Aligned_cols=104 Identities=33% Similarity=0.427 Sum_probs=90.3
Q ss_pred CcEEEEEEEceeccccccccCCCCCCCCCcEEEEEECC---EEEEeeeecCCCCCeeceEEEEEEecC---CCEEEEEEE
Q 002002 586 PIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP---KWVRTRTILDRFNPRWNEQYTWDVYDP---CTVLTIGVF 659 (983)
Q Consensus 586 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~---~~~rT~~~~~t~nP~Wne~~~~~v~~~---~~~l~i~v~ 659 (983)
..|.|.|+|++|+||+.+ |. .|.+||||++.+.+ ...||+++++++||.|||.|.|.+... ...|.|+||
T Consensus 14 ~~~~L~V~v~~a~~L~~~---d~-~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~ 89 (124)
T cd08385 14 QSNQLTVGIIQAADLPAM---DM-GGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVY 89 (124)
T ss_pred CCCEEEEEEEEeeCCCCc---cC-CCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEE
Confidence 456899999999999765 55 78899999999853 577999999999999999999998642 358999999
Q ss_pred eCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEee
Q 002002 660 DNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLT 701 (983)
Q Consensus 660 D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 701 (983)
|++..+ +|++||++.++|+++..+...++|++|.
T Consensus 90 d~d~~~--------~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 90 DFDRFS--------KHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred eCCCCC--------CCceeEEEEEecCcccCCCCcceEEEcc
Confidence 999887 6789999999999998888889999874
No 97
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.63 E-value=1.4e-15 Score=141.71 Aligned_cols=106 Identities=22% Similarity=0.327 Sum_probs=90.5
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEECCeEEeeeCcCCCCCCeeeeEEEEEeeecC-CCCCceEEEEEEeCCCC
Q 002002 5 CNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHDAE-SMPTEILEINLYNDKKT 83 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~~-~l~~~~L~v~V~~~~~~ 83 (983)
..+.|+|+|++|++|. .|.+||||++++++++++|+++++++||.|||+|.|.+..+. .+....|.|.|||.+..
T Consensus 2 ~~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~ 77 (111)
T cd04011 2 QDFQVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSL 77 (111)
T ss_pred CcEEEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCccc
Confidence 4578999999999998 578999999999999999999999999999999999985432 23356899999988877
Q ss_pred CCCCCccEEEEEECccceec--CCeeeEEEEcee
Q 002002 84 GKRSTFLGKVKIAGSTFAKV--GSESSVYYPLEK 115 (983)
Q Consensus 84 ~~~d~~lG~~~i~l~~l~~~--~~~~~~w~~L~~ 115 (983)
+ ++++||++.++++++... +.....||+|..
T Consensus 78 ~-~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 78 R-SDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred c-cCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence 6 799999999999998732 345788999974
No 98
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.63 E-value=1.8e-15 Score=144.03 Aligned_cols=107 Identities=26% Similarity=0.429 Sum_probs=93.0
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEEC---CeEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCC
Q 002002 5 CNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFD---GQRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDK 81 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~---~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~ 81 (983)
..+.|.|+|++|++|++++..|.+||||++.+. +..++|+++++++||.|||+|.|.+... .+....|.|.|||.+
T Consensus 14 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~-~l~~~~l~i~V~d~~ 92 (124)
T cd08387 14 DMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQ-ELPKRTLEVLLYDFD 92 (124)
T ss_pred CCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHH-HhCCCEEEEEEEECC
Confidence 457899999999999999999999999999993 3678999999999999999999998653 234578999999988
Q ss_pred CCCCCCCccEEEEEECccceecCCeeeEEEEce
Q 002002 82 KTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLE 114 (983)
Q Consensus 82 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~ 114 (983)
..+ ++++||++.++++++. .++..+.||+|.
T Consensus 93 ~~~-~~~~iG~~~i~l~~~~-~~~~~~~W~~l~ 123 (124)
T cd08387 93 QFS-RDECIGVVELPLAEVD-LSEKLDLWRKIQ 123 (124)
T ss_pred CCC-CCceeEEEEEeccccc-CCCCcceEEECc
Confidence 775 8999999999999997 345778999986
No 99
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.63 E-value=2.3e-15 Score=138.71 Aligned_cols=92 Identities=20% Similarity=0.292 Sum_probs=81.3
Q ss_pred cEEEEEEEEeeCCCCCCCC----CCCCeEEEEEECCeEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCC
Q 002002 7 RKLIVEVCNAKNLMPKDGQ----GTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKK 82 (983)
Q Consensus 7 ~~L~V~v~~a~~L~~~d~~----g~~dPyv~v~~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~ 82 (983)
+.|.|+|++|++|++.+.. +.+||||+|++++++++|+++++++||+|||+|.|.+.... ....|.|+|||++.
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~--~~~~L~~~V~D~d~ 78 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHE--KNFDIQFKVLDKDK 78 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCcc--CCCEEEEEEEECCC
Confidence 4799999999999987642 35899999999999999999999999999999999987543 14589999999888
Q ss_pred CCCCCCccEEEEEECccce
Q 002002 83 TGKRSTFLGKVKIAGSTFA 101 (983)
Q Consensus 83 ~~~~d~~lG~~~i~l~~l~ 101 (983)
.+ +|++||++.++|+++.
T Consensus 79 ~~-~dd~IG~~~l~L~~l~ 96 (108)
T cd04039 79 FS-FNDYVATGSLSVQELL 96 (108)
T ss_pred CC-CCcceEEEEEEHHHHH
Confidence 86 8999999999999987
No 100
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.62 E-value=1.7e-15 Score=143.78 Aligned_cols=108 Identities=27% Similarity=0.387 Sum_probs=92.9
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEEC---CeEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCC
Q 002002 5 CNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFD---GQRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDK 81 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~---~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~ 81 (983)
....|.|+|++|+||++++..|.+||||++.+. .++++|+++++ +||+|||+|.|.+.....+....|.|.||+.+
T Consensus 14 ~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~ 92 (124)
T cd08389 14 SARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGVE 92 (124)
T ss_pred CCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEECC
Confidence 457899999999999999999999999998773 26889999888 99999999999843434556789999999988
Q ss_pred CCCCCCCccEEEEEECccceecCCeeeEEEEcee
Q 002002 82 KTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEK 115 (983)
Q Consensus 82 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~ 115 (983)
..+ ++++||++.|+|+.+. .+.....||+|++
T Consensus 93 ~~~-~~~~lG~~~i~L~~l~-~~~~~~~w~~L~p 124 (124)
T cd08389 93 RMR-KERLIGEKVVPLSQLN-LEGETTVWLTLEP 124 (124)
T ss_pred Ccc-cCceEEEEEEeccccC-CCCCceEEEeCCC
Confidence 876 8999999999999996 4577889999973
No 101
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.62 E-value=2.1e-15 Score=143.68 Aligned_cols=107 Identities=24% Similarity=0.374 Sum_probs=92.9
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEECC---eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCC
Q 002002 5 CNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFDG---QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDK 81 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~---~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~ 81 (983)
....|.|+|++|+||++++..|.+||||++.+.+ .+++|+++++++||.|||+|.|.+... .+....|.|.|||.+
T Consensus 14 ~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~-~l~~~~l~~~V~d~d 92 (124)
T cd08385 14 QSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYS-ELGNKTLVFSVYDFD 92 (124)
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHH-HhCCCEEEEEEEeCC
Confidence 4578999999999999999999999999999843 578999999999999999999998652 233568999999988
Q ss_pred CCCCCCCccEEEEEECccceecCCeeeEEEEce
Q 002002 82 KTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLE 114 (983)
Q Consensus 82 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~ 114 (983)
.++ ++++||++.++++++. .+.....|++|+
T Consensus 93 ~~~-~~~~lG~~~i~l~~~~-~~~~~~~W~~l~ 123 (124)
T cd08385 93 RFS-KHDLIGEVRVPLLTVD-LGHVTEEWRDLE 123 (124)
T ss_pred CCC-CCceeEEEEEecCccc-CCCCcceEEEcc
Confidence 876 8899999999999986 467788999986
No 102
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.62 E-value=1.3e-15 Score=141.73 Aligned_cols=99 Identities=30% Similarity=0.453 Sum_probs=85.3
Q ss_pred EEEEEEEceeccccccccCCCCC-CCCCcEEEEEEC---CEEEEeeeecCCCCCeeceEEEEEEecC----CCEEEEEEE
Q 002002 588 GLLEVGIRGATNLLPVKTKDGTR-GTTDAYVVAKYG---PKWVRTRTILDRFNPRWNEQYTWDVYDP----CTVLTIGVF 659 (983)
Q Consensus 588 g~L~v~v~~a~~L~~~~~~d~~~-g~sDpy~~~~~~---~~~~rT~~~~~t~nP~Wne~~~~~v~~~----~~~l~i~v~ 659 (983)
|+|+|+|++|++|+.+ |. . |++||||++++. ....+|+++++++||+|||.|.|.+... ...|.|+||
T Consensus 1 G~L~V~v~~a~~L~~~---d~-~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~ 76 (111)
T cd04041 1 GVLVVTIHRATDLPKA---DF-GTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLW 76 (111)
T ss_pred CEEEEEEEEeeCCCcc---cC-CCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEE
Confidence 7899999999999776 45 5 899999999984 3568999999999999999999988643 468999999
Q ss_pred eCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEee
Q 002002 660 DNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLT 701 (983)
Q Consensus 660 D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 701 (983)
|++..+ +|++||++.+++.+|... ..|+++.
T Consensus 77 d~d~~~--------~dd~lG~~~i~l~~l~~~---~~~~~~~ 107 (111)
T cd04041 77 DSDRFT--------ADDRLGRVEIDLKELIED---RNWMGRR 107 (111)
T ss_pred eCCCCC--------CCCcceEEEEEHHHHhcC---CCCCccc
Confidence 999987 678999999999999744 4788765
No 103
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.62 E-value=4.3e-15 Score=141.25 Aligned_cols=104 Identities=23% Similarity=0.296 Sum_probs=87.0
Q ss_pred CcEEEEEEEceeccccccccCCCCCCCCCcEEEEEECC-----EEEEeeeecCCCCCeeceEEEEEEecC---CCEEEEE
Q 002002 586 PIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP-----KWVRTRTILDRFNPRWNEQYTWDVYDP---CTVLTIG 657 (983)
Q Consensus 586 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~-----~~~rT~~~~~t~nP~Wne~~~~~v~~~---~~~l~i~ 657 (983)
..+.|.|+|++|+||+++ |...|.+||||.+.+.+ .+.||+++.+++||+|||+|.|++... ...|.|.
T Consensus 13 ~~~~L~V~V~~a~nL~~~---d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~ 89 (128)
T cd08392 13 RTSCLEITIKACRNLAYG---DEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVS 89 (128)
T ss_pred CCCEEEEEEEecCCCCcc---CCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEE
Confidence 346899999999999876 33138899999999853 367999999999999999999998542 4589999
Q ss_pred EEeCCCCCCcCCCCCCCCceeEEEEEEcccccC---CCeEEEEEEe
Q 002002 658 VFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDT---NRVYLNSYSL 700 (983)
Q Consensus 658 v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~---~~~~~~~~~L 700 (983)
|||.+..+ ++++||++.|+|+++.. +....+||+|
T Consensus 90 V~~~~~~~--------~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l 127 (128)
T cd08392 90 VWHSRTLK--------RRVFLGEVLIPLADWDFEDTDSQRFLWYPL 127 (128)
T ss_pred EEeCCCCc--------CcceEEEEEEEcCCcccCCCCccccceEEC
Confidence 99999877 67799999999999864 3356789987
No 104
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.62 E-value=2.4e-15 Score=143.55 Aligned_cols=108 Identities=22% Similarity=0.385 Sum_probs=93.2
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEE---CCeEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCC
Q 002002 5 CNRKLIVEVCNAKNLMPKDGQGTASAYVIVDF---DGQRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDK 81 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~---~~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~ 81 (983)
....|.|+|++|+||+..+..|.+||||++.+ ++++++|+++++++||.|||+|.|.+...+.+....|.++|||.+
T Consensus 14 ~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d 93 (125)
T cd08386 14 QESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYD 93 (125)
T ss_pred CCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCC
Confidence 45789999999999999998999999999999 347889999999999999999999864433334568999999988
Q ss_pred CCCCCCCccEEEEEECccceecCCeeeEEEEce
Q 002002 82 KTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLE 114 (983)
Q Consensus 82 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~ 114 (983)
..+ ++++||++.+++.++. .+.....|+.|.
T Consensus 94 ~~~-~~~~iG~~~i~l~~l~-~~~~~~~W~~l~ 124 (125)
T cd08386 94 RFS-RNDPIGEVSLPLNKVD-LTEEQTFWKDLK 124 (125)
T ss_pred CCc-CCcEeeEEEEeccccc-CCCCcceEEecC
Confidence 776 8899999999999987 466788999986
No 105
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.62 E-value=2.4e-15 Score=141.30 Aligned_cols=101 Identities=21% Similarity=0.294 Sum_probs=86.6
Q ss_pred EEEEEEEceeccccccccCCCCCCCCCcEEEEEECC-----EEEEeeeecCCCCCeeceEEEEEEec--CCCEEEEEEEe
Q 002002 588 GLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP-----KWVRTRTILDRFNPRWNEQYTWDVYD--PCTVLTIGVFD 660 (983)
Q Consensus 588 g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~-----~~~rT~~~~~t~nP~Wne~~~~~v~~--~~~~l~i~v~D 660 (983)
|.|.|+|++|+||++++ .|.+||||.+.+.+ ...||+++.+++||.|||+|.|.+.. ....|.|+|||
T Consensus 12 ~~L~V~Vi~ar~L~~~~-----~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~ 86 (119)
T cd08685 12 RKLTLHVLEAKGLRSTN-----SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWN 86 (119)
T ss_pred CEEEEEEEEEECCCCCC-----CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEEC
Confidence 57999999999998763 57899999999864 46699999999999999999999854 23579999999
Q ss_pred CCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEe
Q 002002 661 NGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSL 700 (983)
Q Consensus 661 ~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 700 (983)
.+..+ .++++||.+.|+|.++..+.....||+|
T Consensus 87 ~~~~~-------~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 87 KLSKS-------RDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred CCCCc-------CCCEEEEEEEecHHHhccCccccceEeC
Confidence 98765 1467999999999999888878999976
No 106
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.62 E-value=3.3e-15 Score=139.17 Aligned_cols=102 Identities=19% Similarity=0.285 Sum_probs=88.6
Q ss_pred cCEEEEEEEEeecCCCCCCCCcEEEEEEcCeeeeeeec--CC-CccceEEEEeecCC----CCCeEEEEEEcCCcCCccc
Q 002002 272 MPFLYVRVLKAKRAGNVSNGSLYAKLVIGTHSIKTKSQ--AD-KDWDQVFAFDKEGL----NSTSLEVSVWSEEKKENEE 344 (983)
Q Consensus 272 ~~~L~V~v~~a~~L~~~~~~dPyv~v~~~~~~~kTk~~--~~-P~Wne~f~f~~~~~----~~~~l~v~V~d~d~~~~d~ 344 (983)
...|+|+|++|++|. .|.+||||++++++++.+|+++ +. |.|||+|.|.+... ....|.|+|||++. +
T Consensus 3 ~~~l~V~v~~a~~L~-~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~----~ 77 (111)
T cd04011 3 DFQVRVRVIEARQLV-GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRS----L 77 (111)
T ss_pred cEEEEEEEEEcccCC-CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcc----c
Confidence 468999999999998 7889999999999999999998 77 99999999997543 35789999999874 6
Q ss_pred cCCceeEEEEEeccccCCCCCCCCCCCCceEEcccC
Q 002002 345 CTENCLGTVLFDLQEVPKRVPPDSPLAPQWYSLESE 380 (983)
Q Consensus 345 ~~d~~lG~~~i~l~~l~~~~~~~~~l~~~w~~L~~~ 380 (983)
++|++||++.++|+++... +++.+.++|++|.++
T Consensus 78 ~~~~~iG~~~i~l~~v~~~--~~~~~~~~w~~L~~~ 111 (111)
T cd04011 78 RSDTLIGSFKLDVGTVYDQ--PDHAFLRKWLLLTDP 111 (111)
T ss_pred ccCCccEEEEECCccccCC--CCCcceEEEEEeeCc
Confidence 7899999999999999754 456788899999863
No 107
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.61 E-value=4.2e-15 Score=136.87 Aligned_cols=102 Identities=23% Similarity=0.351 Sum_probs=90.4
Q ss_pred EEEEEEEeeCCCCCCCCCCCCCCCCcEEEEEECCeEEEeeeeeeccCCCCCCCCcccceEEEEecCCCCCcEEEEEEeCc
Q 002002 429 LRLTVIQTQDLQPGSGSEPKVRSPELYVKGQLGAQLFKTGRTSVGLSPSSSANPTWNEDLVFVAAEPFEPFLVVTVEDVT 508 (983)
Q Consensus 429 L~V~Viea~~L~~~~~~~d~~~~sdpyv~v~lg~~~~rT~~~~~~~~~~~t~nP~wne~f~f~~~~~~~~~L~i~V~D~d 508 (983)
|.|+|++|++|+.. +..+.+||||++++|+++.||+++. ++.||.|||.|.|.+..+..+.|.|+|+|.+
T Consensus 2 L~V~v~~A~~L~~~----~~~~~~dpyv~v~~~~~~~kT~v~~------~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~ 71 (105)
T cd04050 2 LFVYLDSAKNLPLA----KSTKEPSPYVELTVGKTTQKSKVKE------RTNNPVWEEGFTFLVRNPENQELEIEVKDDK 71 (105)
T ss_pred EEEEEeeecCCCCc----ccCCCCCcEEEEEECCEEEeCcccc------CCCCCcccceEEEEeCCCCCCEEEEEEEECC
Confidence 78999999999987 7778999999999999999999885 5899999999999999887889999999987
Q ss_pred CCceeEEEEEecccccccccCCCCCcceEEeccCC
Q 002002 509 NGCSVGHARIQMSTVERRIDDRAEPKSRWFNLVGD 543 (983)
Q Consensus 509 ~d~~lG~~~i~L~~l~~~~~~~~~~~~~w~~L~~~ 543 (983)
.+++||++.++|.++.... . ...+.||+|.+.
T Consensus 72 ~~~~iG~~~i~l~~l~~~~-~--~~~~~w~~L~~~ 103 (105)
T cd04050 72 TGKSLGSLTLPLSELLKEP-D--LTLDQPFPLDNS 103 (105)
T ss_pred CCCccEEEEEEHHHhhccc-c--ceeeeeEecCCC
Confidence 7889999999999998642 2 367899999764
No 108
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.61 E-value=2.2e-15 Score=140.26 Aligned_cols=104 Identities=26% Similarity=0.363 Sum_probs=88.1
Q ss_pred cEEEEEEEEeeCCCCCCCC-CCCCeEEEEEECC---eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCC
Q 002002 7 RKLIVEVCNAKNLMPKDGQ-GTASAYVIVDFDG---QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKK 82 (983)
Q Consensus 7 ~~L~V~v~~a~~L~~~d~~-g~~dPyv~v~~~~---~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~ 82 (983)
+.|.|+|++|++|+..|.. |.+||||+|.+.+ ..++|+++++++||.|||+|.|.+...+......|.|+|||.+.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 4799999999999999988 8999999999843 57899999999999999999998865422235789999999888
Q ss_pred CCCCCCccEEEEEECccceecCCeeeEEEEcee
Q 002002 83 TGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEK 115 (983)
Q Consensus 83 ~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~ 115 (983)
.+ +|++||++.+++.++. ....|+++..
T Consensus 81 ~~-~dd~lG~~~i~l~~l~----~~~~~~~~~~ 108 (111)
T cd04041 81 FT-ADDRLGRVEIDLKELI----EDRNWMGRRE 108 (111)
T ss_pred CC-CCCcceEEEEEHHHHh----cCCCCCcccc
Confidence 86 8999999999999987 3456777654
No 109
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.61 E-value=6.7e-15 Score=141.33 Aligned_cols=118 Identities=24% Similarity=0.365 Sum_probs=99.5
Q ss_pred cEEEEEEEEeeCCCCCCCCCCCCeEEEEEECCeE-EeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCC-
Q 002002 7 RKLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQR-RRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKTG- 84 (983)
Q Consensus 7 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~-~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~- 84 (983)
..|.|.|++|++|++++ +|||.|.+++++ .||+++.++.||.|+|.|.|....+ ...|.|.||++++..
T Consensus 11 ~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~----~~~l~v~v~k~~~~~~ 81 (146)
T cd04013 11 NSLKLWIIEAKGLPPKK-----RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPP----VSVITVNLYRESDKKK 81 (146)
T ss_pred EEEEEEEEEccCCCCcC-----CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCc----ccEEEEEEEEccCccc
Confidence 57999999999999875 799999999976 6999999999999999999976544 578999998654332
Q ss_pred C--CCCccEEEEEECccceecCCeeeEEEEceecCCcc--------eeeeEEEEEEEEec
Q 002002 85 K--RSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFS--------QIKGEIGLKVYYID 134 (983)
Q Consensus 85 ~--~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~s--------~~~G~l~l~i~~~~ 134 (983)
+ ++++||.+.||+..+. .+...+.||+|......+ ...|.|++++.|.+
T Consensus 82 ~~~~~~~IG~V~Ip~~~l~-~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~ 140 (146)
T cd04013 82 KKDKSQLIGTVNIPVTDVS-SRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQS 140 (146)
T ss_pred cccCCcEEEEEEEEHHHhc-CCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEE
Confidence 1 5789999999999998 678899999998887654 34479999999975
No 110
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.61 E-value=6.6e-15 Score=140.51 Aligned_cols=102 Identities=24% Similarity=0.360 Sum_probs=85.5
Q ss_pred CcEEEEEEEceeccccccccCCCCCCCCCcEEEEEECC-----EEEEeeeecCCCCCeeceEEEEEEec----CCCEEEE
Q 002002 586 PIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP-----KWVRTRTILDRFNPRWNEQYTWDVYD----PCTVLTI 656 (983)
Q Consensus 586 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~-----~~~rT~~~~~t~nP~Wne~~~~~v~~----~~~~l~i 656 (983)
..|.|.|+|++|+||+.+ +. .+.+||||++.+.+ ...||+++++++||.|||+|.|.+.. ....|.|
T Consensus 14 ~~~~L~V~vi~a~~L~~~---~~-~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~ 89 (125)
T cd04031 14 VTSQLIVTVLQARDLPPR---DD-GSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEV 89 (125)
T ss_pred CCCEEEEEEEEecCCCCc---CC-CCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEE
Confidence 346899999999999765 45 78899999999864 57799999999999999999999754 2458999
Q ss_pred EEEeCCCCCCcCCCCCCCCceeEEEEEEccccc-CCCeEEEEEEee
Q 002002 657 GVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLD-TNRVYLNSYSLT 701 (983)
Q Consensus 657 ~v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~-~~~~~~~~~~L~ 701 (983)
+|||++..+ .|++||++.++|++.. .+. .+||+|.
T Consensus 90 ~V~d~~~~~--------~~~~iG~~~i~l~~~~~~~~--~~W~~L~ 125 (125)
T cd04031 90 TVWDYDRDG--------ENDFLGEVVIDLADALLDDE--PHWYPLQ 125 (125)
T ss_pred EEEeCCCCC--------CCcEeeEEEEecccccccCC--cceEECc
Confidence 999999877 6789999999999832 333 6899873
No 111
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.61 E-value=8.1e-15 Score=140.29 Aligned_cols=104 Identities=24% Similarity=0.352 Sum_probs=89.3
Q ss_pred CcEEEEEEEceeccccccccCCCCCCCCCcEEEEEEC-----CEEEEeeeecCCCCCeeceEEEEEEecC---CCEEEEE
Q 002002 586 PIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYG-----PKWVRTRTILDRFNPRWNEQYTWDVYDP---CTVLTIG 657 (983)
Q Consensus 586 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~-----~~~~rT~~~~~t~nP~Wne~~~~~v~~~---~~~l~i~ 657 (983)
..+.|.|+|++|+||+.+ |. .+.+||||++.+. ....||++++++.||+|||+|.|.+... ...|.|.
T Consensus 14 ~~~~L~V~vi~a~~L~~~---~~-~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~ 89 (127)
T cd04030 14 QRQKLIVTVHKCRNLPPC---DS-SDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVA 89 (127)
T ss_pred CCCEEEEEEEEEECCCCc---cC-CCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEE
Confidence 346899999999999766 55 7899999999985 3678999999999999999999998542 3589999
Q ss_pred EEeCCCC--CCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEee
Q 002002 658 VFDNGRY--KRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLT 701 (983)
Q Consensus 658 v~D~d~~--~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 701 (983)
|||++.. + +|++||.+.|+|.++..+.....||+|.
T Consensus 90 v~~~~~~~~~--------~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 127 (127)
T cd04030 90 VKNSKSFLSR--------EKKLLGQVLIDLSDLDLSKGFTQWYDLT 127 (127)
T ss_pred EEECCcccCC--------CCceEEEEEEecccccccCCccceEECc
Confidence 9999875 4 6789999999999998877778999873
No 112
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.61 E-value=7.5e-15 Score=140.08 Aligned_cols=104 Identities=23% Similarity=0.348 Sum_probs=89.3
Q ss_pred CcEEEEEEEceeccccccccCCCCCCCCCcEEEEEEC---CEEEEeeeecCCCCCeeceEEEEEEec----CCCEEEEEE
Q 002002 586 PIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYG---PKWVRTRTILDRFNPRWNEQYTWDVYD----PCTVLTIGV 658 (983)
Q Consensus 586 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~---~~~~rT~~~~~t~nP~Wne~~~~~v~~----~~~~l~i~v 658 (983)
..+.|.|+|++|+||+.+ |. .|++||||.+.+. +...||+++++++||.|||.|.|.+.. ....|.++|
T Consensus 14 ~~~~L~v~v~~a~~L~~~---d~-~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v 89 (125)
T cd08386 14 QESTLTLKILKAVELPAK---DF-SGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQV 89 (125)
T ss_pred CCCEEEEEEEEecCCCCc---cC-CCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEE
Confidence 346899999999999765 55 7889999999983 467899999999999999999998532 234799999
Q ss_pred EeCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEee
Q 002002 659 FDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLT 701 (983)
Q Consensus 659 ~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 701 (983)
||++..+ +|++||++.++++++..+.....||.|.
T Consensus 90 ~d~d~~~--------~~~~iG~~~i~l~~l~~~~~~~~W~~l~ 124 (125)
T cd08386 90 LDYDRFS--------RNDPIGEVSLPLNKVDLTEEQTFWKDLK 124 (125)
T ss_pred EeCCCCc--------CCcEeeEEEEecccccCCCCcceEEecC
Confidence 9999887 6789999999999999888889999875
No 113
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.60 E-value=4e-15 Score=144.65 Aligned_cols=107 Identities=23% Similarity=0.361 Sum_probs=89.9
Q ss_pred EEEEEEEEeeCCCCCCCCC--------------CCCeEEEEEECCeEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceE
Q 002002 8 KLIVEVCNAKNLMPKDGQG--------------TASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEIL 73 (983)
Q Consensus 8 ~L~V~v~~a~~L~~~d~~g--------------~~dPyv~v~~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L 73 (983)
.|.|+|++|++|+.+|..+ .+||||+|.+++++.+|+++++++||+|||+|.|.+..+.. ...|
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~--~~~l 78 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPL--CERI 78 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCc--CCEE
Confidence 3789999999999988543 78999999999999999999999999999999999765421 5689
Q ss_pred EEEEEeCCCCCCCCCccEEEEEECccceecCC------eeeEEEEceecC
Q 002002 74 EINLYNDKKTGKRSTFLGKVKIAGSTFAKVGS------ESSVYYPLEKRS 117 (983)
Q Consensus 74 ~v~V~~~~~~~~~d~~lG~~~i~l~~l~~~~~------~~~~w~~L~~~~ 117 (983)
.|+|||.+..+ +|++||++.+++.++...+. ....|+.|....
T Consensus 79 ~~~v~D~d~~~-~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~~ 127 (151)
T cd04018 79 KIQIRDWDRVG-NDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGSP 127 (151)
T ss_pred EEEEEECCCCC-CCCEEEEEEEeHHHhccCCccccCCccCceEEEeecCc
Confidence 99999988876 89999999999999874332 245788886553
No 114
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.60 E-value=4.1e-15 Score=147.46 Aligned_cols=110 Identities=21% Similarity=0.315 Sum_probs=92.8
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEEC-----CeEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEe
Q 002002 5 CNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFD-----GQRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYN 79 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~-----~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~ 79 (983)
..+.|.|+|++|+||++.+..|.+||||++.+. .++++|+++++++||.|||+|.|.+....++....|.|.|||
T Consensus 25 ~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d 104 (162)
T cd04020 25 STGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWD 104 (162)
T ss_pred CCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEe
Confidence 457899999999999999999999999999882 368899999999999999999998654333446689999999
Q ss_pred CCCCCCCCCccEEEEEECccceecCCeeeEEEEceec
Q 002002 80 DKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKR 116 (983)
Q Consensus 80 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~ 116 (983)
.+.++ ++++||++.+++..+... .....|+.|.+.
T Consensus 105 ~d~~~-~d~~lG~v~i~l~~~~~~-~~~~~w~~~~~~ 139 (162)
T cd04020 105 HDKLS-SNDFLGGVRLGLGTGKSY-GQAVDWMDSTGE 139 (162)
T ss_pred CCCCC-CCceEEEEEEeCCccccC-CCccccccCChH
Confidence 88875 799999999999998733 346788887644
No 115
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.60 E-value=5.2e-15 Score=143.32 Aligned_cols=92 Identities=37% Similarity=0.588 Sum_probs=84.3
Q ss_pred cEEEEEEEceeccccccccCCCCCCCCCcEEEEEECCEEEEeeeecCCCCCeeceEEEEEEecCCCEEEEEEEeCCCCCC
Q 002002 587 IGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILDRFNPRWNEQYTWDVYDPCTVLTIGVFDNGRYKR 666 (983)
Q Consensus 587 ~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~~~~rT~~~~~t~nP~Wne~~~~~v~~~~~~l~i~v~D~d~~~~ 666 (983)
+|.|.|+|++|+||+.. | .+.+||||+++++++..+|+++++++||+|||+|.|.+.++...|.|+|||++.++
T Consensus 1 ~G~L~V~Vi~a~nL~~~---d--~~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~- 74 (145)
T cd04038 1 LGLLKVRVVRGTNLAVR---D--FTSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDTFS- 74 (145)
T ss_pred CeEEEEEEEeeECCCCC---C--CCCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCCCCEEEEEEEECCCCC-
Confidence 58999999999999765 3 37899999999999999999999999999999999999999889999999999988
Q ss_pred cCCCCCCCCceeEEEEEEcccccCC
Q 002002 667 DEAGKPGKDVRVGKIRVRLSTLDTN 691 (983)
Q Consensus 667 ~~~~~~~~d~~lG~~~i~l~~l~~~ 691 (983)
.|++||.+.+++.++...
T Consensus 75 -------~dd~iG~a~i~l~~l~~~ 92 (145)
T cd04038 75 -------KDDSMGEAEIDLEPLVEA 92 (145)
T ss_pred -------CCCEEEEEEEEHHHhhhh
Confidence 788999999999987643
No 116
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.60 E-value=1.2e-14 Score=140.25 Aligned_cols=117 Identities=22% Similarity=0.344 Sum_probs=95.9
Q ss_pred EEEEEEceeccccccccCCCCCCCCCcEEEEEECCEEEEeeeecCCCCCeeceEEEEEEecC----------CCEEEEEE
Q 002002 589 LLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILDRFNPRWNEQYTWDVYDP----------CTVLTIGV 658 (983)
Q Consensus 589 ~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~~~~rT~~~~~t~nP~Wne~~~~~v~~~----------~~~l~i~v 658 (983)
.|+|+|++|++|+++ |. .|.+||||++.+++...||+++++|+||.|||.|.|.+... ...|.|+|
T Consensus 2 ~l~v~V~~a~~L~~~---d~-~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V 77 (135)
T cd04017 2 QLRAYIYQARDLLAA---DK-SGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVEL 77 (135)
T ss_pred EEEEEEEEeecCcCC---CC-CCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEE
Confidence 589999999999776 55 78999999999999999999999999999999999986432 24799999
Q ss_pred EeCCCCCCcCCCCCCCCceeEEEEE-Eccccc---CCCeEEEEEEeeecCCCCCccceEEEEEEEEE
Q 002002 659 FDNGRYKRDEAGKPGKDVRVGKIRV-RLSTLD---TNRVYLNSYSLTVLLPGGAKKMGEIEIAVRFT 721 (983)
Q Consensus 659 ~D~d~~~~~~~~~~~~d~~lG~~~i-~l~~l~---~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~f~ 721 (983)
||++..+ +|++||++.+ ++..+. .+.....||+|... | ...|+|.+++.+.
T Consensus 78 ~d~d~~~--------~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~---~-~~~Geil~~~~~~ 132 (135)
T cd04017 78 FDQDSVG--------KDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKG---G-QSAGELLAAFELI 132 (135)
T ss_pred EeCcCCC--------CCccceEEEeeeeeecccCCCCCCCceEEEeecC---C-CchhheeEEeEEE
Confidence 9999987 7889999997 444443 24566799999632 3 3579999998774
No 117
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.60 E-value=6.1e-15 Score=141.18 Aligned_cols=107 Identities=31% Similarity=0.465 Sum_probs=92.0
Q ss_pred CcEEEEEEEEeeCCCCCCCCCCCCeEEEEEEC-----CeEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeC
Q 002002 6 NRKLIVEVCNAKNLMPKDGQGTASAYVIVDFD-----GQRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYND 80 (983)
Q Consensus 6 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~-----~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~ 80 (983)
...|.|+|++|+||+..+..+.+||||++.+. ..+++|+++++++||.|||+|.|.+... .+....|.|.||+.
T Consensus 15 ~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~-~l~~~~l~i~v~~~ 93 (127)
T cd04030 15 RQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLE-ELKRRTLDVAVKNS 93 (127)
T ss_pred CCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHH-HhcCCEEEEEEEEC
Confidence 47899999999999999998999999999984 3688999999999999999999998653 33457899999987
Q ss_pred CCC-CCCCCccEEEEEECccceecCCeeeEEEEce
Q 002002 81 KKT-GKRSTFLGKVKIAGSTFAKVGSESSVYYPLE 114 (983)
Q Consensus 81 ~~~-~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~ 114 (983)
+.. .+++++||++.+++.++. .+.....||+|+
T Consensus 94 ~~~~~~~~~~iG~~~i~l~~l~-~~~~~~~W~~L~ 127 (127)
T cd04030 94 KSFLSREKKLLGQVLIDLSDLD-LSKGFTQWYDLT 127 (127)
T ss_pred CcccCCCCceEEEEEEeccccc-ccCCccceEECc
Confidence 765 237999999999999986 446778999984
No 118
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.60 E-value=2.1e-14 Score=136.92 Aligned_cols=104 Identities=26% Similarity=0.330 Sum_probs=85.5
Q ss_pred cEEEEEEEceeccccccccCCCCCCCCCcEEEEEEC---CEEEEeeeecCCCCCeeceEEEEE-Ee--c-CCCEEEEEEE
Q 002002 587 IGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYG---PKWVRTRTILDRFNPRWNEQYTWD-VY--D-PCTVLTIGVF 659 (983)
Q Consensus 587 ~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~---~~~~rT~~~~~t~nP~Wne~~~~~-v~--~-~~~~l~i~v~ 659 (983)
.+.|.|+|++|+||+++ |...|.+||||++.+. .+..||+++++++||.|||+|.|. +. + ....|.|+||
T Consensus 15 ~~~L~V~Vi~a~~L~~~---~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~ 91 (128)
T cd08388 15 KKALLVNIIECRDLPAM---DEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVL 91 (128)
T ss_pred CCEEEEEEEEeECCCCC---CCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEE
Confidence 45899999999999876 4413889999999985 356799999999999999999994 32 1 2347999999
Q ss_pred eCCCCCCcCCCCCCCCceeEEEEEEcccccCC--CeEEEEEEee
Q 002002 660 DNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTN--RVYLNSYSLT 701 (983)
Q Consensus 660 D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~--~~~~~~~~L~ 701 (983)
|++..+ +|++||++.|+|+++..+ +....|.+|.
T Consensus 92 d~d~~~--------~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~ 127 (128)
T cd08388 92 SFDRYS--------RDDVIGEVVCPLAGADLLNEGELLVSREIQ 127 (128)
T ss_pred EcCCCC--------CCceeEEEEEeccccCCCCCceEEEEEecc
Confidence 999887 788999999999998644 6778888764
No 119
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.59 E-value=2e-14 Score=139.60 Aligned_cols=122 Identities=15% Similarity=0.215 Sum_probs=97.0
Q ss_pred EEEEEEEeeC--CCCCCCCCCCCeEEEEEE----CC-eEEeeeCcCCCCCCeeeeEEEEEeeecC-----CCCCceEEEE
Q 002002 9 LIVEVCNAKN--LMPKDGQGTASAYVIVDF----DG-QRRRTKTKFRDLNPQWDERLEFLVHDAE-----SMPTEILEIN 76 (983)
Q Consensus 9 L~V~v~~a~~--L~~~d~~g~~dPyv~v~~----~~-~~~~T~~~~~t~nP~WnE~f~f~v~~~~-----~l~~~~L~v~ 76 (983)
..++|..|++ |+..+..|.+||||++++ ++ ++.+|+++++|+||+|||+|.|.+.... .+....|.|+
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~ 83 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE 83 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence 4567777777 778888889999999997 22 7999999999999999999999996532 2446789999
Q ss_pred EEeCCCCCCCCCccEEEEEECccceecCCeeeEEEEceecCCcceeeeEEEEEEEEe
Q 002002 77 LYNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQIKGEIGLKVYYI 133 (983)
Q Consensus 77 V~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~s~~~G~l~l~i~~~ 133 (983)
|||.+.+.++|++||++.++|+.+.. ......|++|.... ....|+|.+++..-
T Consensus 84 V~d~~~f~~~D~~iG~~~i~L~~l~~-~~~~~~~~~L~~~~--k~~Gg~l~v~ir~r 137 (155)
T cd08690 84 VYHKGGFLRSDKLLGTAQVKLEPLET-KCEIHESVDLMDGR--KATGGKLEVKVRLR 137 (155)
T ss_pred EEeCCCcccCCCeeEEEEEEcccccc-cCcceEEEEhhhCC--CCcCCEEEEEEEec
Confidence 99988875479999999999999873 33456699987432 24568999998764
No 120
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.59 E-value=8.1e-15 Score=138.28 Aligned_cols=95 Identities=27% Similarity=0.351 Sum_probs=83.6
Q ss_pred cCCcEEEEEEEceeccccccccCCCCCCCCCcEEEEEECCEEEEeeeecCCCCCeeceEEEEEEec--CCCEEEEEEEeC
Q 002002 584 KSPIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILDRFNPRWNEQYTWDVYD--PCTVLTIGVFDN 661 (983)
Q Consensus 584 ~~~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~~~~rT~~~~~t~nP~Wne~~~~~v~~--~~~~l~i~v~D~ 661 (983)
+..+|.|+|+|++|+||+. +. .|.+||||+++++++..||+++++++||+|||+|.|.... ....|.|+|||+
T Consensus 24 ~~~~~~L~V~V~~A~~L~~----d~-~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~ 98 (127)
T cd04032 24 RRGLATLTVTVLRATGLWG----DY-FTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDR 98 (127)
T ss_pred cCCcEEEEEEEEECCCCCc----Cc-CCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeC
Confidence 3578999999999999952 45 7889999999999999999999999999999999998543 356999999999
Q ss_pred CCCCCcCCCCCCCCceeEEEEEEcccccCC
Q 002002 662 GRYKRDEAGKPGKDVRVGKIRVRLSTLDTN 691 (983)
Q Consensus 662 d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~ 691 (983)
+..+ +|++||++.++|.....+
T Consensus 99 d~~s--------~dd~IG~~~i~l~~~~~~ 120 (127)
T cd04032 99 DNGW--------DDDLLGTCSVVPEAGVHE 120 (127)
T ss_pred CCCC--------CCCeeEEEEEEecCCcee
Confidence 9987 788999999999977644
No 121
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.59 E-value=2.1e-14 Score=139.41 Aligned_cols=117 Identities=25% Similarity=0.339 Sum_probs=92.6
Q ss_pred EEEEEceecc--ccccccCCCCCCCCCcEEEEEE--C---CEEEEeeeecCCCCCeeceEEEEEEecC---------CCE
Q 002002 590 LEVGIRGATN--LLPVKTKDGTRGTTDAYVVAKY--G---PKWVRTRTILDRFNPRWNEQYTWDVYDP---------CTV 653 (983)
Q Consensus 590 L~v~v~~a~~--L~~~~~~d~~~g~sDpy~~~~~--~---~~~~rT~~~~~t~nP~Wne~~~~~v~~~---------~~~ 653 (983)
.+++|..|.| |++. +. .+.+||||.+++ . ....||+++++|+||+|||+|.|.+... ...
T Consensus 4 ~el~i~~~~~~~l~~~---~~-~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~ 79 (155)
T cd08690 4 IELTIVRCIGIPLPSG---WN-PKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHG 79 (155)
T ss_pred eEEEEEEeeccccCCC---cC-CCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCc
Confidence 3455666666 6554 34 678999999986 2 3689999999999999999999999654 247
Q ss_pred EEEEEEeCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeee-cCCCCCccceEEEEEEEEE
Q 002002 654 LTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTV-LLPGGAKKMGEIEIAVRFT 721 (983)
Q Consensus 654 l~i~v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~-~~~~g~~~~G~l~l~~~f~ 721 (983)
|.|+|||++.+. .+|++||++.++|+.+..+.....|++|.. .++. .|.|++++|..
T Consensus 80 L~~~V~d~~~f~-------~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~~k~~----Gg~l~v~ir~r 137 (155)
T cd08690 80 LKFEVYHKGGFL-------RSDKLLGTAQVKLEPLETKCEIHESVDLMDGRKAT----GGKLEVKVRLR 137 (155)
T ss_pred EEEEEEeCCCcc-------cCCCeeEEEEEEcccccccCcceEEEEhhhCCCCc----CCEEEEEEEec
Confidence 999999999864 168899999999999987766678999873 3333 39999999885
No 122
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.59 E-value=1.5e-14 Score=137.56 Aligned_cols=104 Identities=22% Similarity=0.384 Sum_probs=88.5
Q ss_pred CcEEEEEEEceeccccccccCCCCCCCCCcEEEEEECC-----EEEEeeeecCCCCCeeceEEEEEEecC---CCEEEEE
Q 002002 586 PIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP-----KWVRTRTILDRFNPRWNEQYTWDVYDP---CTVLTIG 657 (983)
Q Consensus 586 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~-----~~~rT~~~~~t~nP~Wne~~~~~v~~~---~~~l~i~ 657 (983)
..|.|.|+|++|+||+.++ .. .|.+||||.+.+.+ ...+|+++++++||.|||+|.|.+... ...|.|+
T Consensus 12 ~~~~L~V~v~~a~~L~~~~--~~-~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~ 88 (123)
T cd08521 12 KTGSLEVHIKECRNLAYAD--EK-KKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLS 88 (123)
T ss_pred CCCEEEEEEEEecCCCCcC--CC-CCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEE
Confidence 4578999999999997752 14 67899999998742 467999999999999999999998652 4589999
Q ss_pred EEeCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEe
Q 002002 658 VFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSL 700 (983)
Q Consensus 658 v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 700 (983)
|||++..+ ++++||++.++|.++..+.....||+|
T Consensus 89 v~d~~~~~--------~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 89 VWHHDRFG--------RNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred EEeCCCCc--------CCceeeEEEEecccccccCCCccEEEC
Confidence 99999887 678999999999999777767899986
No 123
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.58 E-value=1.5e-14 Score=137.82 Aligned_cols=109 Identities=22% Similarity=0.276 Sum_probs=94.4
Q ss_pred cEEEEEEEEeeCCCCCCCCCCCCeEEEEEECCeEEeeeCcCC-CCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCCC
Q 002002 7 RKLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFR-DLNPQWDERLEFLVHDAESMPTEILEINLYNDKKTGK 85 (983)
Q Consensus 7 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~-t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~~ 85 (983)
+.|.|+|++|++|+..+..+.+||||+++++++.++|++..+ +.||.|||+|.|.+..+.......|.|+|||.+...
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~- 79 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFS- 79 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCC-
Confidence 479999999999999988899999999999998889999875 899999999999997752112568999999988776
Q ss_pred CCCccEEEEEECccceecCCeeeEEEEceecC
Q 002002 86 RSTFLGKVKIAGSTFAKVGSESSVYYPLEKRS 117 (983)
Q Consensus 86 ~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~ 117 (983)
++++||++.+++.++. .+.....|+.|.+.+
T Consensus 80 ~d~~iG~~~i~l~~l~-~~~~~~~~~~l~p~~ 110 (124)
T cd04049 80 DDDFIGEATIHLKGLF-EEGVEPGTAELVPAK 110 (124)
T ss_pred CCCeEEEEEEEhHHhh-hCCCCcCceEeeccc
Confidence 8999999999999998 445678999998864
No 124
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.58 E-value=7.7e-15 Score=139.99 Aligned_cols=113 Identities=28% Similarity=0.340 Sum_probs=95.3
Q ss_pred EEEEEEceeccccccccCCCCCCCCCcEEEEEECC-EEEEeeeec-CCCCCeeceEEEEEEecC-----CCEEEEEEEeC
Q 002002 589 LLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP-KWVRTRTIL-DRFNPRWNEQYTWDVYDP-----CTVLTIGVFDN 661 (983)
Q Consensus 589 ~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~-~~~rT~~~~-~t~nP~Wne~~~~~v~~~-----~~~l~i~v~D~ 661 (983)
.|+|+|++|++|+.. +. .+++||||++++++ ...+|+++. ++.||.|||.|.|.+.++ ...|.|+|||+
T Consensus 1 ~L~V~V~sA~~L~~~---~~-~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~ 76 (125)
T cd04051 1 TLEITIISAEDLKNV---NL-FGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCE 76 (125)
T ss_pred CEEEEEEEcccCCCC---Cc-ccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEEC
Confidence 388999999999654 55 78999999999988 889999986 589999999999999877 57999999999
Q ss_pred CCCCCcCCCCCCCCceeEEEEEEcccccCCCe-----EEEEEEeeecCCCCCccceEEEE
Q 002002 662 GRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRV-----YLNSYSLTVLLPGGAKKMGEIEI 716 (983)
Q Consensus 662 d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~-----~~~~~~L~~~~~~g~~~~G~l~l 716 (983)
+.++ .|++||.+.++|.++..+.. ...||+|... .| +..|.|++
T Consensus 77 ~~~~--------~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~--~g-~~~G~~~~ 125 (125)
T cd04051 77 RPSL--------GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRP--SG-KPQGVLNF 125 (125)
T ss_pred CCCC--------CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECC--CC-CcCeEEeC
Confidence 9876 67899999999999986543 4689999864 34 45798874
No 125
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.58 E-value=8.2e-15 Score=139.81 Aligned_cols=118 Identities=20% Similarity=0.338 Sum_probs=97.9
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCeEEEEEECC-eEEeeeCcC-CCCCCeeeeEEEEEeeecC-CCCCceEEEEEEeCCCCC
Q 002002 8 KLIVEVCNAKNLMPKDGQGTASAYVIVDFDG-QRRRTKTKF-RDLNPQWDERLEFLVHDAE-SMPTEILEINLYNDKKTG 84 (983)
Q Consensus 8 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-~~~~T~~~~-~t~nP~WnE~f~f~v~~~~-~l~~~~L~v~V~~~~~~~ 84 (983)
.|.|+|++|++|+..+..+.+||||+|++++ ++++|++.. ++.||.|||+|.|.+.... ......|.|+|||.+..+
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~ 80 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL 80 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence 3899999999999999889999999999988 899999975 5899999999999997641 012478999999887765
Q ss_pred CCCCccEEEEEECccceecCC----eeeEEEEceecCCcceeeeEEEE
Q 002002 85 KRSTFLGKVKIAGSTFAKVGS----ESSVYYPLEKRSVFSQIKGEIGL 128 (983)
Q Consensus 85 ~~d~~lG~~~i~l~~l~~~~~----~~~~w~~L~~~~~~s~~~G~l~l 128 (983)
++++||++.+++.++..... ....||+|.+.++ +.+|+|++
T Consensus 81 -~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g--~~~G~~~~ 125 (125)
T cd04051 81 -GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSG--KPQGVLNF 125 (125)
T ss_pred -CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCC--CcCeEEeC
Confidence 89999999999999984333 3578999998663 46798864
No 126
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.58 E-value=2.4e-14 Score=136.81 Aligned_cols=113 Identities=25% Similarity=0.340 Sum_probs=94.7
Q ss_pred EEEEEEceeccccccccCCCCCCCCCcEEEEEECC---EEEEeeeecCCCCCeeceEEEEEEecC-CCEEEEEEEeCCCC
Q 002002 589 LLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP---KWVRTRTILDRFNPRWNEQYTWDVYDP-CTVLTIGVFDNGRY 664 (983)
Q Consensus 589 ~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~---~~~rT~~~~~t~nP~Wne~~~~~v~~~-~~~l~i~v~D~d~~ 664 (983)
.|.|+|++|++|+.+ +. .|.+||||.+.+++ ...||+++.+++||.|||+|.|.+... ...|.|+|||++..
T Consensus 2 ~~~V~v~~a~~L~~~---~~-~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~ 77 (126)
T cd04043 2 LFTIRIVRAENLKAD---SS-NGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFV 77 (126)
T ss_pred EEEEEEEEeECCCCC---CC-CCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCC
Confidence 588999999999765 55 78999999999864 467999999999999999999999774 46899999999987
Q ss_pred CCcCCCCCCCCceeEEEEEEcccccC---CCeEEEEEEeeecCCCCCccceEEEEEEEEE
Q 002002 665 KRDEAGKPGKDVRVGKIRVRLSTLDT---NRVYLNSYSLTVLLPGGAKKMGEIEIAVRFT 721 (983)
Q Consensus 665 ~~~~~~~~~~d~~lG~~~i~l~~l~~---~~~~~~~~~L~~~~~~g~~~~G~l~l~~~f~ 721 (983)
+ +|++||++.++|+++.. +.....|++|.. .|+|++.+.+.
T Consensus 78 ~--------~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~~--------~g~i~l~~~~~ 121 (126)
T cd04043 78 G--------KHDLCGRASLKLDPKRFGDDGLPREIWLDLDT--------QGRLLLRVSME 121 (126)
T ss_pred C--------CCceEEEEEEecCHHHcCCCCCCceEEEEcCC--------CCeEEEEEEEe
Confidence 6 68899999999987642 445578998862 48898888775
No 127
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.58 E-value=1.6e-14 Score=136.14 Aligned_cols=115 Identities=29% Similarity=0.458 Sum_probs=91.7
Q ss_pred EEEEEEEeeCCCCCCCCCCCCeEEEEEECCe-EEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCCCCC
Q 002002 9 LIVEVCNAKNLMPKDGQGTASAYVIVDFDGQ-RRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKTGKRS 87 (983)
Q Consensus 9 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~-~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~~~d 87 (983)
|.|+|++|++|+.. |.+||||.++++++ .++|+++++ .||.|||+|.|.+... .+....|.|.+|+.+... ++
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~-~~~~~~l~i~v~d~~~~~-~~ 75 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPP-DVTFFTLSFYNKDKRSKD-RD 75 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCc-cccEEEEEEEEEecccCC-Ce
Confidence 78999999999976 78999999999984 579999989 9999999999999763 223567888899766553 56
Q ss_pred CccEEEEEECccceecCCeeeEEEEceecCCcceeeeEEEEEEEE
Q 002002 88 TFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQIKGEIGLKVYY 132 (983)
Q Consensus 88 ~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~s~~~G~l~l~i~~ 132 (983)
.++|.+.+. .+. .+.....||+|.+........|+|++.+.|
T Consensus 76 ~~~g~v~l~--~~~-~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 117 (117)
T cd08383 76 IVIGKVALS--KLD-LGQGKDEWFPLTPVDPDSEVQGSVRLRARY 117 (117)
T ss_pred eEEEEEEec--CcC-CCCcceeEEECccCCCCCCcCceEEEEEEC
Confidence 677765554 443 356678999999876655678999999865
No 128
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.58 E-value=1.1e-14 Score=138.62 Aligned_cols=106 Identities=28% Similarity=0.509 Sum_probs=91.1
Q ss_pred CCcEEEEEEEEeeCCCCCC-CCCCCCeEEEEEECC-----eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEE
Q 002002 5 CNRKLIVEVCNAKNLMPKD-GQGTASAYVIVDFDG-----QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLY 78 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d-~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~ 78 (983)
....|.|+|++|+||+..+ ..|.+||||++.+.. .+++|+++++++||.|||+|.|.+... ++....|.|.||
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~-~l~~~~l~i~v~ 90 (123)
T cd08521 12 KTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKS-QLETRTLQLSVW 90 (123)
T ss_pred CCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHH-HhCCCEEEEEEE
Confidence 4578999999999999998 788999999998832 568999999999999999999998652 334578999999
Q ss_pred eCCCCCCCCCccEEEEEECccceecCCeeeEEEEc
Q 002002 79 NDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPL 113 (983)
Q Consensus 79 ~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L 113 (983)
|.+..+ ++++||++.+++.++. .+.....||+|
T Consensus 91 d~~~~~-~~~~iG~~~i~l~~l~-~~~~~~~w~~l 123 (123)
T cd08521 91 HHDRFG-RNTFLGEVEIPLDSWD-LDSQQSEWYPL 123 (123)
T ss_pred eCCCCc-CCceeeEEEEeccccc-ccCCCccEEEC
Confidence 888776 8899999999999986 45667899987
No 129
>PLN03008 Phospholipase D delta
Probab=99.58 E-value=1.3e-14 Score=169.95 Aligned_cols=105 Identities=19% Similarity=0.281 Sum_probs=93.5
Q ss_pred CCCCCcEEEEEECCE-EEEeeeecCCCCCeeceEEEEEEecCCCEEEEEEEeCCCCCCcCCCCCCCCceeEEEEEEcccc
Q 002002 610 RGTTDAYVVAKYGPK-WVRTRTILDRFNPRWNEQYTWDVYDPCTVLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTL 688 (983)
Q Consensus 610 ~g~sDpy~~~~~~~~-~~rT~~~~~t~nP~Wne~~~~~v~~~~~~l~i~v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l 688 (983)
.++|||||+|.+++. ..||+++++++||+|||+|.|.+.++.+.|+|+|||+|.++ . ++||++.|+|.+|
T Consensus 74 ~~tSDPYV~I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~g--------a-D~IG~a~IPL~~L 144 (868)
T PLN03008 74 VITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFG--------A-QIIGTAKIPVRDI 144 (868)
T ss_pred cCCCCceEEEEECCcceeeEEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccC--------C-ceeEEEEEEHHHc
Confidence 458899999999875 66999999999999999999999999899999999999987 4 5999999999999
Q ss_pred cCCCeEEEEEEeeecCCCCCccceEEEEEEEEEec
Q 002002 689 DTNRVYLNSYSLTVLLPGGAKKMGEIEIAVRFTCS 723 (983)
Q Consensus 689 ~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~f~~~ 723 (983)
..|.....|++|.....+..+..|+|+++++|++.
T Consensus 145 ~~Ge~vd~Wl~Ll~~~~kp~k~~~kl~v~lqf~pv 179 (868)
T PLN03008 145 ASGERISGWFPVLGASGKPPKAETAIFIDMKFTPF 179 (868)
T ss_pred CCCCceEEEEEccccCCCCCCCCcEEEEEEEEEEc
Confidence 99999999999998754444556899999999873
No 130
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.57 E-value=1.4e-14 Score=137.78 Aligned_cols=109 Identities=22% Similarity=0.337 Sum_probs=92.3
Q ss_pred CCCcEEEEEEEEeeCCCCCC-CCCCCCeEEEEEEC---CeEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEe
Q 002002 4 SCNRKLIVEVCNAKNLMPKD-GQGTASAYVIVDFD---GQRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYN 79 (983)
Q Consensus 4 ~~~~~L~V~v~~a~~L~~~d-~~g~~dPyv~v~~~---~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~ 79 (983)
.....|.|+|++|++|+.++ ..|.+||||++.+. .+.++|+++++++||.|||+|.|.+... .+....|.|.|||
T Consensus 11 ~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~-~l~~~~l~i~v~d 89 (123)
T cd08390 11 LEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFK-ELQRRTLRLSVYD 89 (123)
T ss_pred CCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHH-HhcccEEEEEEEE
Confidence 34578999999999999998 68899999999983 3678899999999999999999998653 2234689999999
Q ss_pred CCCCCCCCCccEEEEEECccceecCCeeeEEEEcee
Q 002002 80 DKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEK 115 (983)
Q Consensus 80 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~ 115 (983)
.+..+ ++++||++.++++++. .......|++|++
T Consensus 90 ~~~~~-~~~~iG~~~i~L~~l~-~~~~~~~w~~L~~ 123 (123)
T cd08390 90 VDRFS-RHCIIGHVLFPLKDLD-LVKGGVVWRDLEP 123 (123)
T ss_pred CCcCC-CCcEEEEEEEecccee-cCCCceEEEeCCC
Confidence 88775 7899999999999988 3456679999974
No 131
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.57 E-value=1.4e-14 Score=140.84 Aligned_cols=94 Identities=24% Similarity=0.405 Sum_probs=81.4
Q ss_pred EEEEEceeccccccccC-----------CCCCCCCCcEEEEEECCEEEEeeeecCCCCCeeceEEEEEEecC--CCEEEE
Q 002002 590 LEVGIRGATNLLPVKTK-----------DGTRGTTDAYVVAKYGPKWVRTRTILDRFNPRWNEQYTWDVYDP--CTVLTI 656 (983)
Q Consensus 590 L~v~v~~a~~L~~~~~~-----------d~~~g~sDpy~~~~~~~~~~rT~~~~~t~nP~Wne~~~~~v~~~--~~~l~i 656 (983)
|.|+|++|++|+.|+.. +. .+.+||||++.++++..||+++++++||+|||+|.|++..+ ...|.|
T Consensus 2 ~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~-~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~ 80 (151)
T cd04018 2 FIFKIYRAEDLPQMDSGIMANVKKAFLGEK-KELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKI 80 (151)
T ss_pred eEEEEEEeCCCCccChhhhccceeccccCC-CCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEE
Confidence 78999999999988521 11 35799999999999999999999999999999999998654 469999
Q ss_pred EEEeCCCCCCcCCCCCCCCceeEEEEEEcccccCCC
Q 002002 657 GVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNR 692 (983)
Q Consensus 657 ~v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~ 692 (983)
+|||+|..+ +|++||++.++++++....
T Consensus 81 ~v~D~d~~~--------~dd~iG~~~l~l~~l~~~~ 108 (151)
T cd04018 81 QIRDWDRVG--------NDDVIGTHFIDLSKISNSG 108 (151)
T ss_pred EEEECCCCC--------CCCEEEEEEEeHHHhccCC
Confidence 999999987 7889999999999986543
No 132
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.57 E-value=1.6e-14 Score=143.21 Aligned_cols=105 Identities=24% Similarity=0.373 Sum_probs=88.8
Q ss_pred CCcEEEEEEEceeccccccccCCCCCCCCCcEEEEEEC-----CEEEEeeeecCCCCCeeceEEEEEEecC----CCEEE
Q 002002 585 SPIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYG-----PKWVRTRTILDRFNPRWNEQYTWDVYDP----CTVLT 655 (983)
Q Consensus 585 ~~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~-----~~~~rT~~~~~t~nP~Wne~~~~~v~~~----~~~l~ 655 (983)
...|.|.|+|++|+||+++ |. .|.+||||.+.+. ....||+++++++||.|||.|.|.+... ...|.
T Consensus 24 ~~~g~L~V~Vi~A~nL~~~---d~-~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~ 99 (162)
T cd04020 24 PSTGELHVWVKEAKNLPAL---KS-GGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLE 99 (162)
T ss_pred CCCceEEEEEEeeeCCCCC---CC-CCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEE
Confidence 4689999999999999776 55 7899999999873 3578999999999999999999986432 34899
Q ss_pred EEEEeCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEee
Q 002002 656 IGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLT 701 (983)
Q Consensus 656 i~v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 701 (983)
|+|||++..+ +|++||++.+++.++.......+||.|.
T Consensus 100 i~V~d~d~~~--------~d~~lG~v~i~l~~~~~~~~~~~w~~~~ 137 (162)
T cd04020 100 LTVWDHDKLS--------SNDFLGGVRLGLGTGKSYGQAVDWMDST 137 (162)
T ss_pred EEEEeCCCCC--------CCceEEEEEEeCCccccCCCccccccCC
Confidence 9999999987 6889999999999987655557888665
No 133
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.57 E-value=1.3e-14 Score=138.13 Aligned_cols=103 Identities=26% Similarity=0.382 Sum_probs=91.4
Q ss_pred EEEEEEEceeccccccccCCCCCCCCCcEEEEEECCEEEEeeeecC-CCCCeeceEEEEEEecC----CCEEEEEEEeCC
Q 002002 588 GLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILD-RFNPRWNEQYTWDVYDP----CTVLTIGVFDNG 662 (983)
Q Consensus 588 g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~~~~rT~~~~~-t~nP~Wne~~~~~v~~~----~~~l~i~v~D~d 662 (983)
|.|+|+|++|+||+.+ +. .+++||||++++++...+|+++.+ +.||.|||.|.|.+..+ ...|.|+|||.+
T Consensus 1 g~L~V~V~~A~~L~~~---~~-~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~ 76 (124)
T cd04049 1 GTLEVLLISAKGLQDT---DF-LGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKD 76 (124)
T ss_pred CeEEEEEEecCCCCCC---CC-CCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECc
Confidence 6899999999999655 55 789999999999998899999885 89999999999999887 568999999999
Q ss_pred CCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeee
Q 002002 663 RYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTV 702 (983)
Q Consensus 663 ~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 702 (983)
..+ .|++||.+.+++.++..+.....||+|..
T Consensus 77 ~~~--------~d~~iG~~~i~l~~l~~~~~~~~~~~l~p 108 (124)
T cd04049 77 NFS--------DDDFIGEATIHLKGLFEEGVEPGTAELVP 108 (124)
T ss_pred cCC--------CCCeEEEEEEEhHHhhhCCCCcCceEeec
Confidence 887 67899999999999987666788998874
No 134
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.57 E-value=1.3e-14 Score=136.79 Aligned_cols=104 Identities=18% Similarity=0.254 Sum_probs=88.0
Q ss_pred CCcEEEEEEEceeccccccccCCCCCCCCCcEEEEEEC--C----EEEEeeeecCCCCCeeceEEEEEEec---CCCEEE
Q 002002 585 SPIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYG--P----KWVRTRTILDRFNPRWNEQYTWDVYD---PCTVLT 655 (983)
Q Consensus 585 ~~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~--~----~~~rT~~~~~t~nP~Wne~~~~~v~~---~~~~l~ 655 (983)
+..+.|.|+|++|+||+++ +. .|.+||||.+.+- . .+.||+++++++||+|||+|+|++.. ....|.
T Consensus 11 ~~~~~L~V~V~~arnL~~~---~~-~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~ 86 (124)
T cd08680 11 SGDSSLVISVEQLRNLSAL---SI-PENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQ 86 (124)
T ss_pred CCCCEEEEEEeEecCCccc---cc-CCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEE
Confidence 4567899999999999876 44 7789999999973 2 47899999999999999999999864 346999
Q ss_pred EEEEeCCCCCCcCCCCCCCCceeEEEEEEcccccCC-CeEEEEEEe
Q 002002 656 IGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTN-RVYLNSYSL 700 (983)
Q Consensus 656 i~v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~-~~~~~~~~L 700 (983)
|+|||.+..+ ++++||.+.|+|+++... ....+||+|
T Consensus 87 ~~V~~~~~~~--------~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 87 VDVCSVGPDQ--------QEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred EEEEeCCCCC--------ceeEEEEEEEEhhhccCCCccccccccC
Confidence 9999999877 678999999999999544 456889875
No 135
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.56 E-value=5.1e-14 Score=136.38 Aligned_cols=89 Identities=22% Similarity=0.440 Sum_probs=83.0
Q ss_pred cEEEEEEEEeeCCCCCCCCCCCCeEEEEEECCeEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCCCC
Q 002002 7 RKLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKTGKR 86 (983)
Q Consensus 7 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~~~ 86 (983)
+.|.|+|++|++|+..+. +++||||++++++++++|+++++++||.|||+|.|.+..+ ...|.|+|||.+.++ +
T Consensus 2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~----~~~l~~~V~D~d~~~-~ 75 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNP----MAPLKLEVFDKDTFS-K 75 (145)
T ss_pred eEEEEEEEeeECCCCCCC-CCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCC----CCEEEEEEEECCCCC-C
Confidence 579999999999999887 8999999999999999999999999999999999999876 678999999988886 8
Q ss_pred CCccEEEEEECccce
Q 002002 87 STFLGKVKIAGSTFA 101 (983)
Q Consensus 87 d~~lG~~~i~l~~l~ 101 (983)
|++||++.+++..+.
T Consensus 76 dd~iG~a~i~l~~l~ 90 (145)
T cd04038 76 DDSMGEAEIDLEPLV 90 (145)
T ss_pred CCEEEEEEEEHHHhh
Confidence 999999999999876
No 136
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.56 E-value=2.8e-14 Score=133.97 Aligned_cols=113 Identities=27% Similarity=0.431 Sum_probs=96.6
Q ss_pred EEEEEEEeeCCCCCCCCCCCCeEEEEEECC-eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCCCCC
Q 002002 9 LIVEVCNAKNLMPKDGQGTASAYVIVDFDG-QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKTGKRS 87 (983)
Q Consensus 9 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~~~d 87 (983)
|+|+|++|++|+..+..|.+||||++.+++ +.++|+++.++.||.|||+|.|.+.... ...|.|+|||.+..+ ++
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~---~~~l~~~v~d~~~~~-~~ 76 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRV---RAVLKVEVYDWDRGG-KD 76 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCC---CCEEEEEEEeCCCCC-CC
Confidence 579999999999999889999999999976 5689999999999999999999987642 678999999888775 89
Q ss_pred CccEEEEEECccceecCCeeeEEEEceecCCcceeeeEEEE
Q 002002 88 TFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQIKGEIGL 128 (983)
Q Consensus 88 ~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~s~~~G~l~l 128 (983)
++||++.+++.++. .+.....|++|.+++.. ..|.|.+
T Consensus 77 ~~iG~~~~~l~~l~-~~~~~~~~~~L~~~g~~--~~~~~~~ 114 (115)
T cd04040 77 DLLGSAYIDLSDLE-PEETTELTLPLDGQGGG--KLGAVFL 114 (115)
T ss_pred CceEEEEEEHHHcC-CCCcEEEEEECcCCCCc--cCceEEc
Confidence 99999999999987 55678999999877543 3466653
No 137
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.56 E-value=1.4e-14 Score=139.67 Aligned_cols=106 Identities=26% Similarity=0.448 Sum_probs=92.5
Q ss_pred EEEEEEEeeCCCCCCCCCCCCeEEEEEEC----CeEEeeeCcCCCCCCeeeeEEEEEeeec------------CCCCCce
Q 002002 9 LIVEVCNAKNLMPKDGQGTASAYVIVDFD----GQRRRTKTKFRDLNPQWDERLEFLVHDA------------ESMPTEI 72 (983)
Q Consensus 9 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~----~~~~~T~~~~~t~nP~WnE~f~f~v~~~------------~~l~~~~ 72 (983)
|.|+|++|++|+.+ ..|.+||||+|.++ +++++|+++.++.||.|||+|.|.+... .++....
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 67999999999998 78899999999998 6889999999999999999999998764 2334678
Q ss_pred EEEEEEeCCCCCCCCCccEEEEEECccceecCCeeeEEEEceecC
Q 002002 73 LEINLYNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRS 117 (983)
Q Consensus 73 L~v~V~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~ 117 (983)
|.|+|||.+..+ +++|||++.+++..+. .......||+|.+++
T Consensus 80 l~i~V~d~~~~~-~~~~IG~~~i~l~~l~-~~~~~~~W~~L~~~~ 122 (137)
T cd08675 80 LRVELWHASMVS-GDDFLGEVRIPLQGLQ-QAGSHQAWYFLQPRE 122 (137)
T ss_pred EEEEEEcCCcCc-CCcEEEEEEEehhhcc-CCCcccceEecCCcC
Confidence 999999888775 8999999999999987 445678999998874
No 138
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.56 E-value=4.6e-14 Score=134.20 Aligned_cols=117 Identities=25% Similarity=0.369 Sum_probs=96.9
Q ss_pred cEEEEEEEEeeCCCCCCCCCCCCeEEEEEECCe-EEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCCC
Q 002002 7 RKLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQ-RRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKTGK 85 (983)
Q Consensus 7 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~-~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~~ 85 (983)
..|.|+|++|+ |...+..+.+||||+++++++ .++|+++++++||.|||+|.|.+.. ...|.|+|||.+..+
T Consensus 2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~-----~~~l~~~V~d~~~~~- 74 (125)
T cd04021 2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP-----QSTLEFKVWSHHTLK- 74 (125)
T ss_pred ceEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCC-----CCEEEEEEEeCCCCC-
Confidence 47999999998 666666889999999999987 8999999999999999999999853 578999999988775
Q ss_pred CCCccEEEEEECccceec--CCe--eeEEEEceecCC-cceeeeEEEEEE
Q 002002 86 RSTFLGKVKIAGSTFAKV--GSE--SSVYYPLEKRSV-FSQIKGEIGLKV 130 (983)
Q Consensus 86 ~d~~lG~~~i~l~~l~~~--~~~--~~~w~~L~~~~~-~s~~~G~l~l~i 130 (983)
.+++||++.+++.++... +.. ...|++|.+.+. .....|+|.+.+
T Consensus 75 ~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 75 ADVLLGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred CCcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 899999999999998732 222 335899987763 346789998875
No 139
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.56 E-value=2.2e-14 Score=135.15 Aligned_cols=103 Identities=29% Similarity=0.371 Sum_probs=90.9
Q ss_pred EEEEEEEceeccccccccCCCCCCCCCcEEEEEECC-EEEEeeeecCCCCCeeceEEEEEEecCCCEEEEEEEeCCCCCC
Q 002002 588 GLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP-KWVRTRTILDRFNPRWNEQYTWDVYDPCTVLTIGVFDNGRYKR 666 (983)
Q Consensus 588 g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~-~~~rT~~~~~t~nP~Wne~~~~~v~~~~~~l~i~v~D~d~~~~ 666 (983)
|.|+|+|++|++|+.. +. .|.+||||++.+++ ...+|+++.++.||.|||.|.|++..+...|.|+|||++..+
T Consensus 1 g~L~V~Vi~a~~L~~~---d~-~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~- 75 (120)
T cd04045 1 GVLRLHIRKANDLKNL---EG-VGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVG- 75 (120)
T ss_pred CeEEEEEEeeECCCCc---cC-CCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCCCCEEEEEEEECCCCC-
Confidence 7899999999999655 55 78999999999976 578999999999999999999999888789999999999887
Q ss_pred cCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeeec
Q 002002 667 DEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVL 703 (983)
Q Consensus 667 ~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 703 (983)
+|++||++.++|.++..+ ....||-|.+.
T Consensus 76 -------~d~~IG~~~~~l~~l~~~-~~~~~~~~~~~ 104 (120)
T cd04045 76 -------KDRSLGSVEINVSDLIKK-NEDGKYVEYDD 104 (120)
T ss_pred -------CCCeeeEEEEeHHHhhCC-CCCceEEecCC
Confidence 688999999999999876 34788877754
No 140
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.56 E-value=4.7e-14 Score=134.19 Aligned_cols=105 Identities=20% Similarity=0.269 Sum_probs=89.4
Q ss_pred CcEEEEEEEceeccccccccCCCCCCCCCcEEEEEEC---CEEEEeeeecCCCCCeeceEEEEEEecC---CCEEEEEEE
Q 002002 586 PIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYG---PKWVRTRTILDRFNPRWNEQYTWDVYDP---CTVLTIGVF 659 (983)
Q Consensus 586 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~---~~~~rT~~~~~t~nP~Wne~~~~~v~~~---~~~l~i~v~ 659 (983)
..+.|.|+|++|+||+.++. . .|.+||||.+++. ....+|+++++++||.|||.|.|.+... ...|.|.||
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~--~-~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~ 88 (123)
T cd08390 12 EEEQLTVSLIKARNLPPRTK--D-VAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVY 88 (123)
T ss_pred CCCEEEEEEEEecCCCCccC--C-CCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEE
Confidence 45689999999999976521 3 6789999999984 3567999999999999999999998653 358999999
Q ss_pred eCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEee
Q 002002 660 DNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLT 701 (983)
Q Consensus 660 D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 701 (983)
|++..+ +|++||++.++|+++........|++|.
T Consensus 89 d~~~~~--------~~~~iG~~~i~L~~l~~~~~~~~w~~L~ 122 (123)
T cd08390 89 DVDRFS--------RHCIIGHVLFPLKDLDLVKGGVVWRDLE 122 (123)
T ss_pred ECCcCC--------CCcEEEEEEEeccceecCCCceEEEeCC
Confidence 999876 6789999999999998877778999885
No 141
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.55 E-value=1.9e-14 Score=140.05 Aligned_cols=101 Identities=28% Similarity=0.456 Sum_probs=87.2
Q ss_pred cCCCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEECC-----------------------------eEEeeeCcCCCCCCe
Q 002002 3 ESCNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFDG-----------------------------QRRRTKTKFRDLNPQ 53 (983)
Q Consensus 3 ~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----------------------------~~~~T~~~~~t~nP~ 53 (983)
+.+.+.|.|+|++|++|.++|..|.+||||+|.+.. +.++|+++++++||.
T Consensus 24 ~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~ 103 (153)
T cd08676 24 EPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPV 103 (153)
T ss_pred CCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCc
Confidence 356789999999999999999999999999999853 237899999999999
Q ss_pred eeeEEEEEeeecCCCCCceEEEEEEeCCCCCCCCCccEEEEEECccceecCCeeeEEEEc
Q 002002 54 WDERLEFLVHDAESMPTEILEINLYNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPL 113 (983)
Q Consensus 54 WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L 113 (983)
|||+|.|.+.... ...|.|+|||.+ ++|||++.++++++. . ...+.||+|
T Consensus 104 WnE~F~f~v~~~~---~~~L~i~V~D~d-----d~~IG~v~i~l~~l~-~-~~~d~W~~L 153 (153)
T cd08676 104 WNETFRFEVEDVS---NDQLHLDIWDHD-----DDFLGCVNIPLKDLP-S-CGLDSWFKL 153 (153)
T ss_pred cccEEEEEeccCC---CCEEEEEEEecC-----CCeEEEEEEEHHHhC-C-CCCCCeEeC
Confidence 9999999996542 678999999765 789999999999987 2 346899987
No 142
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.55 E-value=2.6e-14 Score=134.81 Aligned_cols=94 Identities=23% Similarity=0.369 Sum_probs=82.0
Q ss_pred CCCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEECCeEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCC
Q 002002 4 SCNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKT 83 (983)
Q Consensus 4 ~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~ 83 (983)
.+.+.|.|+|++|++|.. +..|.+||||+|.+++++++|+++++++||+|||+|.|...... ....|.|+|||.+..
T Consensus 25 ~~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~--~~~~L~v~V~D~d~~ 101 (127)
T cd04032 25 RGLATLTVTVLRATGLWG-DYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELS--PGGKLRFEVWDRDNG 101 (127)
T ss_pred CCcEEEEEEEEECCCCCc-CcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCC--CCCEEEEEEEeCCCC
Confidence 456899999999999984 67788999999999999999999999999999999999753321 267999999998887
Q ss_pred CCCCCccEEEEEECccce
Q 002002 84 GKRSTFLGKVKIAGSTFA 101 (983)
Q Consensus 84 ~~~d~~lG~~~i~l~~l~ 101 (983)
+ +|++||++.+++....
T Consensus 102 s-~dd~IG~~~i~l~~~~ 118 (127)
T cd04032 102 W-DDDLLGTCSVVPEAGV 118 (127)
T ss_pred C-CCCeeEEEEEEecCCc
Confidence 6 8999999999999765
No 143
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.55 E-value=4.3e-14 Score=132.70 Aligned_cols=112 Identities=30% Similarity=0.419 Sum_probs=94.5
Q ss_pred EEEEEceeccccccccCCCCCCCCCcEEEEEECC-EEEEeeeecCCCCCeeceEEEEEEecC-CCEEEEEEEeCCCCCCc
Q 002002 590 LEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP-KWVRTRTILDRFNPRWNEQYTWDVYDP-CTVLTIGVFDNGRYKRD 667 (983)
Q Consensus 590 L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~-~~~rT~~~~~t~nP~Wne~~~~~v~~~-~~~l~i~v~D~d~~~~~ 667 (983)
|+|+|++|++|+.. +. .|.+||||++.+++ ...+|+++.++.||.|||.|.|.+.+. ...+.|+|||++..+
T Consensus 1 l~v~vi~a~~L~~~---~~-~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~-- 74 (115)
T cd04040 1 LTVDVISAENLPSA---DR-NGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGG-- 74 (115)
T ss_pred CEEEEEeeeCCCCC---CC-CCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCC--
Confidence 57899999999765 45 78899999999965 567999999999999999999999764 568999999999876
Q ss_pred CCCCCCCCceeEEEEEEcccccCCCeEEEEEEeeecCCCCCccceEEEE
Q 002002 668 EAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLPGGAKKMGEIEI 716 (983)
Q Consensus 668 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l 716 (983)
+|++||++.+++.++..+..+..|++|... |..+.|.|.+
T Consensus 75 ------~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~---g~~~~~~~~~ 114 (115)
T cd04040 75 ------KDDLLGSAYIDLSDLEPEETTELTLPLDGQ---GGGKLGAVFL 114 (115)
T ss_pred ------CCCceEEEEEEHHHcCCCCcEEEEEECcCC---CCccCceEEc
Confidence 688999999999999988888999998743 3344576643
No 144
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.55 E-value=4.9e-14 Score=132.78 Aligned_cols=112 Identities=27% Similarity=0.441 Sum_probs=88.3
Q ss_pred EEEEEceeccccccccCCCCCCCCCcEEEEEECC-EEEEeeeecCCCCCeeceEEEEEEecC---CCEEEEEEEeCCCCC
Q 002002 590 LEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP-KWVRTRTILDRFNPRWNEQYTWDVYDP---CTVLTIGVFDNGRYK 665 (983)
Q Consensus 590 L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~-~~~rT~~~~~t~nP~Wne~~~~~v~~~---~~~l~i~v~D~d~~~ 665 (983)
|.|+|++|+||+.+ |.+||||++++++ ++.+|+++.+ .||.|||+|.|.+... ...|.|.+||.+..+
T Consensus 2 L~v~vi~a~~l~~~-------~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~ 73 (117)
T cd08383 2 LRLRILEAKNLPSK-------GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKD 73 (117)
T ss_pred eEEEEEEecCCCcC-------CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCC
Confidence 78999999999642 6799999999987 4689999999 9999999999999763 347888888887654
Q ss_pred CcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeeecCCCCCccceEEEEEEEE
Q 002002 666 RDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLPGGAKKMGEIEIAVRF 720 (983)
Q Consensus 666 ~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~f 720 (983)
.+..+|++.|. .+..+.....||+|......+ +..|+|+++++|
T Consensus 74 --------~~~~~g~v~l~--~~~~~~~~~~w~~L~~~~~~~-~~~G~l~l~~~~ 117 (117)
T cd08383 74 --------RDIVIGKVALS--KLDLGQGKDEWFPLTPVDPDS-EVQGSVRLRARY 117 (117)
T ss_pred --------CeeEEEEEEec--CcCCCCcceeEEECccCCCCC-CcCceEEEEEEC
Confidence 56677766554 455566678999998764433 457999999976
No 145
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.55 E-value=6.1e-14 Score=133.08 Aligned_cols=103 Identities=21% Similarity=0.218 Sum_probs=87.4
Q ss_pred CcEEEEEEEceeccccccccCCCCCCCCCcEEEEEEC---CEEEEeeeecCCCCCeeceEEEEE-Eec---CCCEEEEEE
Q 002002 586 PIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYG---PKWVRTRTILDRFNPRWNEQYTWD-VYD---PCTVLTIGV 658 (983)
Q Consensus 586 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~---~~~~rT~~~~~t~nP~Wne~~~~~-v~~---~~~~l~i~v 658 (983)
..+.|.|+|++|+||+++ +. .|.+||||.+.+. ....||++.++ .||+|||+|.|+ +.. ....|.+.|
T Consensus 14 ~~~~L~V~Vi~a~nL~~~---~~-~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V 88 (124)
T cd08389 14 SARKLTVTVIRAQDIPTK---DR-GGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRL 88 (124)
T ss_pred CCCEEEEEEEEecCCCch---hc-CCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEE
Confidence 345799999999999876 45 7889999998763 25779999888 999999999998 532 245899999
Q ss_pred EeCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEee
Q 002002 659 FDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLT 701 (983)
Q Consensus 659 ~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 701 (983)
||++..+ ++++||++.|+|+++..+.....||+|.
T Consensus 89 ~~~~~~~--------~~~~lG~~~i~L~~l~~~~~~~~w~~L~ 123 (124)
T cd08389 89 YGVERMR--------KERLIGEKVVPLSQLNLEGETTVWLTLE 123 (124)
T ss_pred EECCCcc--------cCceEEEEEEeccccCCCCCceEEEeCC
Confidence 9999887 6789999999999998888889999885
No 146
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.54 E-value=7.8e-15 Score=140.70 Aligned_cols=107 Identities=24% Similarity=0.351 Sum_probs=89.0
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEECC-----eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEe
Q 002002 5 CNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFDG-----QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYN 79 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~ 79 (983)
....|.|+|++|+||++.+..|.+||||++++.. .+++|+++++++||+|||+|.|.+... .+....|.|.||+
T Consensus 13 ~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~-~l~~~~l~~~V~~ 91 (136)
T cd08406 13 TAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAI-VLQDLSLRVTVAE 91 (136)
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHH-HhCCcEEEEEEEe
Confidence 3468999999999999999999999999999932 367899999999999999999998663 4567899999999
Q ss_pred CCCCCCCCCccEEEEEECccceecCCeeeEEEEceec
Q 002002 80 DKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKR 116 (983)
Q Consensus 80 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~ 116 (983)
.+.++ ++++||++.+.... .++....|..+...
T Consensus 92 ~d~~~-~~~~iG~v~lg~~~---~g~~~~hW~~ml~~ 124 (136)
T cd08406 92 STEDG-KTPNVGHVIIGPAA---SGMGLSHWNQMLAS 124 (136)
T ss_pred CCCCC-CCCeeEEEEECCCC---CChhHHHHHHHHHC
Confidence 88876 89999999997653 34556677665443
No 147
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.53 E-value=3.1e-15 Score=158.57 Aligned_cols=107 Identities=28% Similarity=0.486 Sum_probs=95.7
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEEC-----CeEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEe
Q 002002 5 CNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFD-----GQRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYN 79 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~-----~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~ 79 (983)
....|.|+|.+|+||.++|.+|.+||||.+.+- .-+++|++++.++||+|||+|.|.+...+. +..|.|+|||
T Consensus 178 ~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~Dk--drRlsiEvWD 255 (683)
T KOG0696|consen 178 KRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDK--DRRLSIEVWD 255 (683)
T ss_pred cCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccc--cceeEEEEec
Confidence 456899999999999999999999999999992 257889999999999999999999976554 7789999999
Q ss_pred CCCCCCCCCccEEEEEECccceecCCeeeEEEEceec
Q 002002 80 DKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKR 116 (983)
Q Consensus 80 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~ 116 (983)
.|+++ ++||+|...+.++++.+ ...+.||.|...
T Consensus 256 WDrTs-RNDFMGslSFgisEl~K--~p~~GWyKlLsq 289 (683)
T KOG0696|consen 256 WDRTS-RNDFMGSLSFGISELQK--APVDGWYKLLSQ 289 (683)
T ss_pred ccccc-cccccceecccHHHHhh--cchhhHHHHhhh
Confidence 99997 99999999999999974 567889999866
No 148
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.53 E-value=7.1e-14 Score=131.71 Aligned_cols=104 Identities=28% Similarity=0.376 Sum_probs=91.2
Q ss_pred cEEEEEEEEeeCCCCCCCCCCCCeEEEEEECC-eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCCC
Q 002002 7 RKLIVEVCNAKNLMPKDGQGTASAYVIVDFDG-QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKTGK 85 (983)
Q Consensus 7 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~~ 85 (983)
+.|.|+|++|++|+..+..|.+||||++.+++ ..++|+++.++.||.|||+|.|.+... ...|.|+|||.+..+
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~----~~~L~v~v~d~~~~~- 75 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSP----NQKITLEVMDYEKVG- 75 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCC----CCEEEEEEEECCCCC-
Confidence 46899999999999999889999999999987 678999999999999999999998765 578999999888775
Q ss_pred CCCccEEEEEECccceecCCeeeEEEEceecC
Q 002002 86 RSTFLGKVKIAGSTFAKVGSESSVYYPLEKRS 117 (983)
Q Consensus 86 ~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~ 117 (983)
+|++||++.+++.++... ....||.|.+.+
T Consensus 76 ~d~~IG~~~~~l~~l~~~--~~~~~~~~~~~~ 105 (120)
T cd04045 76 KDRSLGSVEINVSDLIKK--NEDGKYVEYDDE 105 (120)
T ss_pred CCCeeeEEEEeHHHhhCC--CCCceEEecCCC
Confidence 889999999999999843 457788877654
No 149
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=1e-14 Score=160.28 Aligned_cols=122 Identities=30% Similarity=0.566 Sum_probs=110.4
Q ss_pred cEEEEEEEEeeCCCCCCCCCCCCeEEEEEECCeEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCC---
Q 002002 7 RKLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKT--- 83 (983)
Q Consensus 7 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~--- 83 (983)
.++.++|++|++|.++|..|++||||.+.++..+.||+++...+||+|||.|.|...+. ...+++.|||.++-
T Consensus 295 akitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechns----tdrikvrvwded~dlks 370 (1283)
T KOG1011|consen 295 AKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNS----TDRIKVRVWDEDNDLKS 370 (1283)
T ss_pred eeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCC----CceeEEEEecCcccHHH
Confidence 57899999999999999999999999999999999999999999999999999999987 78999999987653
Q ss_pred -------CCCCCccEEEEEECccceecCCeeeEEEEceecCCcceeeeEEEEEEEEecC
Q 002002 84 -------GKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQIKGEIGLKVYYIDE 135 (983)
Q Consensus 84 -------~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~s~~~G~l~l~i~~~~~ 135 (983)
..+|+|||+..|.+..+. ...+.||.|+++..+|.+.|.|+|.|...-.
T Consensus 371 klrqkl~resddflgqtvievrtls---gemdvwynlekrtdksavsgairlhisveik 426 (1283)
T KOG1011|consen 371 KLRQKLTRESDDFLGQTVIEVRTLS---GEMDVWYNLEKRTDKSAVSGAIRLHISVEIK 426 (1283)
T ss_pred HHHHHhhhcccccccceeEEEEecc---cchhhhcchhhccchhhccceEEEEEEEEEc
Confidence 236899999999988876 5788999999999999999999998877543
No 150
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.52 E-value=8.2e-14 Score=134.17 Aligned_cols=92 Identities=23% Similarity=0.282 Sum_probs=80.2
Q ss_pred cEEEEEEEceeccccccccCCCCCCCCCcEEEEEEC-------CEEEEeeeecCCCCCeeceEEEEEEecC-----CCEE
Q 002002 587 IGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYG-------PKWVRTRTILDRFNPRWNEQYTWDVYDP-----CTVL 654 (983)
Q Consensus 587 ~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~-------~~~~rT~~~~~t~nP~Wne~~~~~v~~~-----~~~l 654 (983)
.+.|.|+|++|++|+.+ +. .|.+||||++++. ....||+++++|+||+|||+|.|++... ...|
T Consensus 15 ~~~L~V~Vi~A~~L~~~---~~-~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l 90 (133)
T cd04009 15 EQSLRVEILNARNLLPL---DS-NGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALL 90 (133)
T ss_pred CCEEEEEEEEeeCCCCc---CC-CCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEE
Confidence 45799999999999765 45 7899999999985 2478999999999999999999998653 3489
Q ss_pred EEEEEeCCCCCCcCCCCCCCCceeEEEEEEcccccC
Q 002002 655 TIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDT 690 (983)
Q Consensus 655 ~i~v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~ 690 (983)
.|+|||++..+ +|++||++.++|++|..
T Consensus 91 ~~~V~d~d~~~--------~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 91 LFTVKDYDLLG--------SNDFEGEAFLPLNDIPG 118 (133)
T ss_pred EEEEEecCCCC--------CCcEeEEEEEeHHHCCc
Confidence 99999999887 78899999999999874
No 151
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.52 E-value=7.4e-14 Score=129.88 Aligned_cols=99 Identities=23% Similarity=0.275 Sum_probs=83.6
Q ss_pred CCCCCCcEEEEEECCE-EEEeeeecCCCCCeeceEEEEEEecCC-CEEEEEEEeCCCCCCcCCCCCCCCceeEEEEEEcc
Q 002002 609 TRGTTDAYVVAKYGPK-WVRTRTILDRFNPRWNEQYTWDVYDPC-TVLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLS 686 (983)
Q Consensus 609 ~~g~sDpy~~~~~~~~-~~rT~~~~~t~nP~Wne~~~~~v~~~~-~~l~i~v~D~d~~~~~~~~~~~~d~~lG~~~i~l~ 686 (983)
..|++||||++.++++ ..+|+++.++.||.|||.|.|.+.++. ..|.|.|||++..+ |++||++.++|+
T Consensus 9 ~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~---------d~~iG~~~v~L~ 79 (111)
T cd04052 9 KTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDRH---------DPVLGSVSISLN 79 (111)
T ss_pred cCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCCC---------CCeEEEEEecHH
Confidence 3889999999999874 679999999999999999999998764 68999999999763 669999999999
Q ss_pred cccC-CCeEEEEEEeeecCCCCCccceEEEEEEEEEe
Q 002002 687 TLDT-NRVYLNSYSLTVLLPGGAKKMGEIEIAVRFTC 722 (983)
Q Consensus 687 ~l~~-~~~~~~~~~L~~~~~~g~~~~G~l~l~~~f~~ 722 (983)
++.. +.....||+|.. ++.|+|++++.|++
T Consensus 80 ~l~~~~~~~~~w~~L~~------~~~G~i~~~~~~~p 110 (111)
T cd04052 80 DLIDATSVGQQWFPLSG------NGQGRIRISALWKP 110 (111)
T ss_pred HHHhhhhccceeEECCC------CCCCEEEEEEEEec
Confidence 9853 344578999873 24699999999863
No 152
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.52 E-value=4e-14 Score=135.63 Aligned_cols=105 Identities=25% Similarity=0.377 Sum_probs=87.0
Q ss_pred CCcEEEEEEEEeeCCCCCC--CCCCCCeEEEEEECC-----eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEE
Q 002002 5 CNRKLIVEVCNAKNLMPKD--GQGTASAYVIVDFDG-----QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINL 77 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d--~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V 77 (983)
..+.|.|.|++|+||.++| ..+.+||||+|++.. .+++|+++++++||+|||+|.|.+.. +.+....|.|+|
T Consensus 13 ~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~-~~L~~~~L~~~V 91 (138)
T cd08407 13 AANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPS-ELLAASSVELEV 91 (138)
T ss_pred CCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCH-HHhCccEEEEEE
Confidence 4578999999999999998 335599999999843 36789999999999999999999875 355678899999
Q ss_pred EeCCCCCCCCCccEEEEEECccceecCCeeeEEEEce
Q 002002 78 YNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLE 114 (983)
Q Consensus 78 ~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~ 114 (983)
||.+.++ ++++||++.+++.. .|+....|..+.
T Consensus 92 ~d~d~~~-~~d~iG~v~lg~~~---~g~~~~hW~~ml 124 (138)
T cd08407 92 LNQDSPG-QSLPLGRCSLGLHT---SGTERQHWEEML 124 (138)
T ss_pred EeCCCCc-CcceeceEEecCcC---CCcHHHHHHHHH
Confidence 9998886 89999999999875 345556666553
No 153
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.52 E-value=4.8e-14 Score=136.00 Aligned_cols=103 Identities=19% Similarity=0.253 Sum_probs=90.2
Q ss_pred EEEEEceeccccccccCCCCCCCCCcEEEEEEC----CEEEEeeeecCCCCCeeceEEEEEEecC---------------
Q 002002 590 LEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYG----PKWVRTRTILDRFNPRWNEQYTWDVYDP--------------- 650 (983)
Q Consensus 590 L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~----~~~~rT~~~~~t~nP~Wne~~~~~v~~~--------------- 650 (983)
|.|.|++|++|+.+ . .|.+||||.++++ +...+|+++.++.||.|||.|.|.+...
T Consensus 1 L~V~Vi~A~~L~~~----~-~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~ 75 (137)
T cd08675 1 LSVRVLECRDLALK----S-NGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDL 75 (137)
T ss_pred CEEEEEEccCCCcc----c-CCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccc
Confidence 57899999999654 2 6889999999998 6789999999999999999999999765
Q ss_pred -CCEEEEEEEeCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeeecCC
Q 002002 651 -CTVLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLP 705 (983)
Q Consensus 651 -~~~l~i~v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~ 705 (983)
...|.|+|||++..+ .+++||++.++|.++........||+|.....
T Consensus 76 ~~~~l~i~V~d~~~~~--------~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~~ 123 (137)
T cd08675 76 EKSELRVELWHASMVS--------GDDFLGEVRIPLQGLQQAGSHQAWYFLQPREA 123 (137)
T ss_pred cccEEEEEEEcCCcCc--------CCcEEEEEEEehhhccCCCcccceEecCCcCC
Confidence 348999999999876 67899999999999987767789999987653
No 154
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.52 E-value=1.9e-13 Score=129.98 Aligned_cols=116 Identities=25% Similarity=0.341 Sum_probs=92.8
Q ss_pred EEEEEEceeccccccccCCCCCCCCCcEEEEEECCE-EEEeeeecCCCCCeeceEEEEEEecCCCEEEEEEEeCCCCCCc
Q 002002 589 LLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPK-WVRTRTILDRFNPRWNEQYTWDVYDPCTVLTIGVFDNGRYKRD 667 (983)
Q Consensus 589 ~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~~-~~rT~~~~~t~nP~Wne~~~~~v~~~~~~l~i~v~D~d~~~~~ 667 (983)
.|.|+|++|+ |... +. .+++||||.+++++. ..+|+++.+++||.|||.|.|.+. ....|.|+|||++..+
T Consensus 3 ~L~V~i~~a~-l~~~---~~-~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~-~~~~l~~~V~d~~~~~-- 74 (125)
T cd04021 3 QLQITVESAK-LKSN---SK-SFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVT-PQSTLEFKVWSHHTLK-- 74 (125)
T ss_pred eEEEEEEeeE-CCCC---Cc-CCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeC-CCCEEEEEEEeCCCCC--
Confidence 5899999998 5332 34 678999999999886 899999999999999999999985 4579999999999987
Q ss_pred CCCCCCCCceeEEEEEEcccccCCCe-----EEEEEEeeecCCCCCccceEEEEEE
Q 002002 668 EAGKPGKDVRVGKIRVRLSTLDTNRV-----YLNSYSLTVLLPGGAKKMGEIEIAV 718 (983)
Q Consensus 668 ~~~~~~~d~~lG~~~i~l~~l~~~~~-----~~~~~~L~~~~~~g~~~~G~l~l~~ 718 (983)
.|++||++.++|.++..+.. +..|++|........+..|.|++.+
T Consensus 75 ------~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 75 ------ADVLLGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred ------CCcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 68899999999999874321 3457888754321224579998875
No 155
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.51 E-value=5.6e-14 Score=134.60 Aligned_cols=105 Identities=18% Similarity=0.190 Sum_probs=84.2
Q ss_pred CCcEEEEEEEceeccccccccCCCCCCCCCcEEEEEECC-----EEEEeeeecCCCCCeeceEEEEEEecC---CCEEEE
Q 002002 585 SPIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP-----KWVRTRTILDRFNPRWNEQYTWDVYDP---CTVLTI 656 (983)
Q Consensus 585 ~~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~-----~~~rT~~~~~t~nP~Wne~~~~~v~~~---~~~l~i 656 (983)
+..|.|.|.|++|+||.+++.. . .+.+||||++.+.. ++.||+++++++||+|||.|.|.+... ...|.|
T Consensus 12 ~~~~~L~V~V~karnL~~~d~~-~-~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~ 89 (138)
T cd08407 12 PAANRLLVVVIKAKNLHSDQLK-L-LLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVEL 89 (138)
T ss_pred CCCCeEEEEEEEecCCCccccC-C-CCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEE
Confidence 3457899999999999887421 2 34589999999854 356999999999999999999998642 458999
Q ss_pred EEEeCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEee
Q 002002 657 GVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLT 701 (983)
Q Consensus 657 ~v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 701 (983)
+|||+|..+ ++++||++.+.+.. .|...+||..+.
T Consensus 90 ~V~d~d~~~--------~~d~iG~v~lg~~~--~g~~~~hW~~ml 124 (138)
T cd08407 90 EVLNQDSPG--------QSLPLGRCSLGLHT--SGTERQHWEEML 124 (138)
T ss_pred EEEeCCCCc--------CcceeceEEecCcC--CCcHHHHHHHHH
Confidence 999999988 77899999999975 454456776544
No 156
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.51 E-value=2.8e-13 Score=129.82 Aligned_cols=118 Identities=26% Similarity=0.291 Sum_probs=91.7
Q ss_pred EEEEEEceeccccccccCCCCCCCCCcEEEEEECC-------------EEEEeeeecCCCCCee-ceEEEEEEecCCCEE
Q 002002 589 LLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP-------------KWVRTRTILDRFNPRW-NEQYTWDVYDPCTVL 654 (983)
Q Consensus 589 ~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~-------------~~~rT~~~~~t~nP~W-ne~~~~~v~~~~~~l 654 (983)
.+.|.+++|+||+ +|. .|++||||.+.+.+ +..+|+++++++||+| ||+|.|.+. ....|
T Consensus 2 ~~~~~~~~A~~L~----~~~-fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~-~~~~L 75 (137)
T cd08691 2 SFSLSGLQARNLK----KGM-FFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGL-PTDVL 75 (137)
T ss_pred EEEEEEEEeCCCC----Ccc-CCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcC-CCCEE
Confidence 4678999999994 356 79999999999842 3689999999999999 999999985 45689
Q ss_pred EEEEEeCCCCCCcCCCCCCCCceeEEEEEEcccccCCC---eEEEEEEeeecCCCCCccceEEEEEE
Q 002002 655 TIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNR---VYLNSYSLTVLLPGGAKKMGEIEIAV 718 (983)
Q Consensus 655 ~i~v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~---~~~~~~~L~~~~~~g~~~~G~l~l~~ 718 (983)
.|+|||++..+. ...|++||++.|++++|..+. ....||+|......+ ..+|+|.+.+
T Consensus 76 ~v~V~D~~~~~~-----~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s-~v~G~~~l~~ 136 (137)
T cd08691 76 EIEVKDKFAKSR-----PIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTPTD-HVSGQLTFRF 136 (137)
T ss_pred EEEEEecCCCCC-----ccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCCCC-cEEEEEEEEe
Confidence 999999875431 002679999999999997542 356788887543332 4569998875
No 157
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=99.51 E-value=2.6e-14 Score=166.08 Aligned_cols=382 Identities=17% Similarity=0.186 Sum_probs=229.1
Q ss_pred CEEEEEEEEeecCCCC---CCCCcEEEEEEcCeeeeeeec--CC-CccceEEEEeecCCC---------CCeEEEEEEcC
Q 002002 273 PFLYVRVLKAKRAGNV---SNGSLYAKLVIGTHSIKTKSQ--AD-KDWDQVFAFDKEGLN---------STSLEVSVWSE 337 (983)
Q Consensus 273 ~~L~V~v~~a~~L~~~---~~~dPyv~v~~~~~~~kTk~~--~~-P~Wne~f~f~~~~~~---------~~~l~v~V~d~ 337 (983)
..+++.|.+|+.|..+ +-+|||+.+.+-++...|.++ ++ |.||++..|...++. -..+.++|+|.
T Consensus 206 ~~lR~yiyQar~L~a~dk~~~sdp~a~v~f~~qs~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~yd~ 285 (1105)
T KOG1326|consen 206 SPLRSYIYQARALGAPDKDDESDPDAAVEFCGQSKETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEVYDL 285 (1105)
T ss_pred hhhHHHHHHHHhhcCCCcccCCCchhhhhcccccceeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEEEeehh
Confidence 4588999999999854 468999999999999999999 88 999999999865443 23577899998
Q ss_pred CcCCccccCCceeEEEEEeccccCCCCCCCCCCCCceEEcccCCCCCceEEEEEEeccCcchhhhhhcccCCCCCCcccc
Q 002002 338 EKKENEECTENCLGTVLFDLQEVPKRVPPDSPLAPQWYSLESEKLPGNDVMLAVWIGTQADEAFQEAWQSDSGGLIPETR 417 (983)
Q Consensus 338 d~~~~d~~~d~~lG~~~i~l~~l~~~~~~~~~l~~~w~~L~~~~~~~g~i~l~~~~g~~~de~~~~~~~s~~~~~~~~~~ 417 (983)
+. .+.++++|.......=... ++ +-.|+++..++...|++.++.-.-.+.- +-.|..+.... ....
T Consensus 286 dr----~g~~ef~gr~~~~p~V~~~--~p----~lkw~p~~rg~~l~gd~l~a~eliq~~~---~i~~p~~~~~~-~~~~ 351 (1105)
T KOG1326|consen 286 DR----SGINEFKGRKKQRPYVMVQ--CP----ALKWVPTMRGAFLDGDVLIAAELIQIGK---PIPQPPPQREI-IFSL 351 (1105)
T ss_pred hh----hchHHhhcccccceEEEec--CC----ccceEEeecccccccchhHHHHHHhhcC---CCCCCCccccc-ceec
Confidence 85 6899999998765542221 22 2389999888777788766542100000 11111110000 0000
Q ss_pred cccccCCceEEEEEEEEEeeCCCCCCCCCCCCCCCCcEEEEEECCeEEEeeeeeeccCCCCCCCCcccceEEEE-ecCC-
Q 002002 418 AKVYLSPKLWYLRLTVIQTQDLQPGSGSEPKVRSPELYVKGQLGAQLFKTGRTSVGLSPSSSANPTWNEDLVFV-AAEP- 495 (983)
Q Consensus 418 ~~~~~~p~l~~L~V~Viea~~L~~~~~~~d~~~~sdpyv~v~lg~~~~rT~~~~~~~~~~~t~nP~wne~f~f~-~~~~- 495 (983)
-.....|.+..-.++|. +.+|..++. ........|-+.+.+|++...+..+. +.-.||.+...+.+- +.-|
T Consensus 352 vp~~iRp~~q~~~~evl-~wgLrn~k~-~~m~~~~~P~~~~e~g~e~v~s~~I~-----~~k~npnf~s~~~~~~v~lpd 424 (1105)
T KOG1326|consen 352 VPKKIRPKTQIGKAELL-MWGLRNPKK-SGMASTFSPALLVEFGGERVSSFSIF-----NRKKNPNFPSRVLGRLVILPD 424 (1105)
T ss_pred cccCCCcceeeeeeehh-hhhhccccc-ccccccCCcceeEeeCCceEeeeeeh-----hhhhCCCCceeEEEEEEeccc
Confidence 00112344433333332 334443210 02234457888888899999998885 356789888765442 2222
Q ss_pred ---CCCcEEEEEEeCc---CCceeEEEEEeccc-c----------cccc------------cCC-CCCcceEEec-----
Q 002002 496 ---FEPFLVVTVEDVT---NGCSVGHARIQMST-V----------ERRI------------DDR-AEPKSRWFNL----- 540 (983)
Q Consensus 496 ---~~~~L~i~V~D~d---~d~~lG~~~i~L~~-l----------~~~~------------~~~-~~~~~~w~~L----- 540 (983)
....+.+.|.|.+ ....+|.|.|+-.. + .... +.. ....+.|+..
T Consensus 425 ~e~Y~ppl~akvvd~~~fg~~~v~g~c~i~~l~nf~c~p~~~~~~~Pq~~~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 504 (1105)
T KOG1326|consen 425 EELYMPPLNAKVVDLRQFGRMEVVGQCKILSLYNFFCDPSAVNSITPQFASDPVSIMMGSTDNEIRHCNSSTLPASPHED 504 (1105)
T ss_pred hHhhCccceeEEEecccccceeehhhhcchhhhhhccCchhhcccCcCCCCCchhhhcCCchhhhhhccccCCCCCcccc
Confidence 2457899999877 67888988775321 0 0000 000 0001111111
Q ss_pred ------------cCCCCCC-------cceEEEEEEEE---e-------------------cccc--cccccc--------
Q 002002 541 ------------VGDETRP-------YAGRIHLRACL---E-------------------GGYH--VLDEAA-------- 569 (983)
Q Consensus 541 ------------~~~~~~~-------~~G~l~l~i~l---~-------------------g~~~--v~~~~~-------- 569 (983)
....+.. .++...|.|+- + |... ..++..
T Consensus 505 ~~e~~~~~w~k~~~~~~~~~k~~~~~~K~~~~LKiyn~ele~v~ef~~l~D~~~~f~l~rG~~~~e~~e~~Ivg~fKgl~ 584 (1105)
T KOG1326|consen 505 EEEREVDWWGKFYPSAEENAKWEVYEHKINVTLKIYNMELEMVAEFRGLQDWAVTFKLYRGKEGLECLEQQIVGEFKGLF 584 (1105)
T ss_pred ccceehhhhhhccccccccccccccccccceEEEEehhhhhhHHHHhhhhhccceeEeeeccccCCCcccchhhhhhcce
Confidence 1100000 11112222220 0 0000 000000
Q ss_pred -------ccCCchhHHH-Hhhc--cCCcEEEEEEEceeccccccccCCCCCCCCCcEEEEEECCEE--EEeeeecCCCCC
Q 002002 570 -------HVTSDVRAAA-KQLA--KSPIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKW--VRTRTILDRFNP 637 (983)
Q Consensus 570 -------~~~~d~~~~~-~~l~--~~~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~~~--~rT~~~~~t~nP 637 (983)
..+++..|.. ..+. .+-.-.++|.|++|.+|.+. |. +|++|||+.+.+|.+. -+++.+.+|+||
T Consensus 585 rIyp~~~~~~~p~~pr~~~~~~~~~pi~~LvrVyvv~A~~L~p~---D~-ng~adpYv~l~lGk~~~~d~~~yip~tlnP 660 (1105)
T KOG1326|consen 585 RIYPVPRNPSSPAPPRHFLDLPKEEPIKCLVRVYVVEAFSLQPS---DG-NGDADPYVKLLLGKKRTLDRAHYIPNTLNP 660 (1105)
T ss_pred eeecCCCccCCCCChhhhhcccccCcceeeEEEEEEEeeecccc---CC-CCCcCceeeeeeccchhhhhhhcCcCCCCc
Confidence 0000101110 0111 12344678999999999665 77 9999999999999876 477889999999
Q ss_pred eeceEEEEEEecCCC-EEEEEEEeCCCCCCcCCCCCCCCceeEEEEEEccc
Q 002002 638 RWNEQYTWDVYDPCT-VLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLST 687 (983)
Q Consensus 638 ~Wne~~~~~v~~~~~-~l~i~v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~ 687 (983)
++.+.|++....|.. .++++|||+|..+ .|+.||...|.|..
T Consensus 661 Vfgkmfel~~~lp~ek~l~v~vyd~D~~~--------~d~~iget~iDLEn 703 (1105)
T KOG1326|consen 661 VFGKMFELECLLPFEKDLIVEVYDHDLEA--------QDEKIGETTIDLEN 703 (1105)
T ss_pred HHHHHHHhhcccchhhcceeEEEEeeccc--------ccchhhceehhhhh
Confidence 999999999887754 8999999999988 78899999998865
No 158
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.50 E-value=8.4e-14 Score=129.52 Aligned_cols=101 Identities=24% Similarity=0.421 Sum_probs=85.9
Q ss_pred CCCCCCeEEEEEECC-eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCCCCCCccEEEEEECcccee
Q 002002 24 GQGTASAYVIVDFDG-QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKTGKRSTFLGKVKIAGSTFAK 102 (983)
Q Consensus 24 ~~g~~dPyv~v~~~~-~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~~~d~~lG~~~i~l~~l~~ 102 (983)
.+|.+||||.+.+++ ..++|++++++.||.|||+|.|.+.+.. ...|.|.|||.+.. ++++||++.++|+++..
T Consensus 9 ~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~---~~~l~i~v~d~~~~--~d~~iG~~~v~L~~l~~ 83 (111)
T cd04052 9 KTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRR---KSRVTVVVKDDRDR--HDPVLGSVSISLNDLID 83 (111)
T ss_pred cCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcC---CCEEEEEEEECCCC--CCCeEEEEEecHHHHHh
Confidence 468899999999988 4679999999999999999999997642 57899999987766 78999999999999874
Q ss_pred cCCeeeEEEEceecCCcceeeeEEEEEEEEec
Q 002002 103 VGSESSVYYPLEKRSVFSQIKGEIGLKVYYID 134 (983)
Q Consensus 103 ~~~~~~~w~~L~~~~~~s~~~G~l~l~i~~~~ 134 (983)
.+.....||+|.+. ..|+|++++.|.+
T Consensus 84 ~~~~~~~w~~L~~~-----~~G~i~~~~~~~p 110 (111)
T cd04052 84 ATSVGQQWFPLSGN-----GQGRIRISALWKP 110 (111)
T ss_pred hhhccceeEECCCC-----CCCEEEEEEEEec
Confidence 44557899999852 3599999999874
No 159
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.50 E-value=5.8e-14 Score=179.66 Aligned_cols=121 Identities=26% Similarity=0.453 Sum_probs=105.6
Q ss_pred hccCCcEEEEEEEceeccccccccCCCCCCCCCcEEEEEECC-EEEEeeeecCCCCCeeceEEEEEEecCC--CEEEEEE
Q 002002 582 LAKSPIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP-KWVRTRTILDRFNPRWNEQYTWDVYDPC--TVLTIGV 658 (983)
Q Consensus 582 l~~~~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~-~~~rT~~~~~t~nP~Wne~~~~~v~~~~--~~l~i~v 658 (983)
|+....|.|.|+|++|+||. . + .|++||||++.+|+ ...||++++++.||+|||+|+|.+.+|. ..|+|+|
T Consensus 1974 ~~~~~~G~L~V~V~~a~nl~-~---~--~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev 2047 (2102)
T PLN03200 1974 LLQCLPGSLTVTIKRGNNLK-Q---S--MGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISC 2047 (2102)
T ss_pred HHhhCCcceEEEEeeccccc-c---c--cCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEE
Confidence 44567999999999999995 2 2 78999999999996 4889999999999999999999998876 6899999
Q ss_pred EeCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeeecCCCCCccceE---EEEEEEEE
Q 002002 659 FDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLPGGAKKMGE---IEIAVRFT 721 (983)
Q Consensus 659 ~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~---l~l~~~f~ 721 (983)
||+|.++ +| .||++.|++.++..+..|..||+|... | +|.|. |+++++|+
T Consensus 2048 ~d~d~f~--------kd-~~G~~~i~l~~vv~~~~~~~~~~L~~~---~-~k~G~~~~~~~e~~w~ 2100 (2102)
T PLN03200 2048 KSKNTFG--------KS-SLGKVTIQIDRVVMEGTYSGEYSLNPE---S-NKDGSSRTLEIEFQWS 2100 (2102)
T ss_pred EecCccC--------CC-CCceEEEEHHHHhcCceeeeeeecCcc---c-ccCCCcceEEEEEEec
Confidence 9999987 56 899999999999999999999999843 2 34577 99999885
No 160
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.50 E-value=3.2e-14 Score=137.30 Aligned_cols=107 Identities=20% Similarity=0.390 Sum_probs=90.6
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEECC-----eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEe
Q 002002 5 CNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFDG-----QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYN 79 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~ 79 (983)
..+.|.|+|++|++|++.|..|.+||||++.+.+ .+++|+++++++||.|||+|.|.+... ++....|.|+|||
T Consensus 11 ~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~-~l~~~~l~~~V~d 89 (133)
T cd08384 11 QRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHS-DLAKKTLEITVWD 89 (133)
T ss_pred CCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHH-HhCCCEEEEEEEe
Confidence 3578999999999999999999999999999842 578999999999999999999998753 2345789999998
Q ss_pred CCCCCCCCCccEEEEEECccceecCCeeeEEEEceec
Q 002002 80 DKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKR 116 (983)
Q Consensus 80 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~ 116 (983)
.+..+ ++++||++.+++.. .++....|+.+.+.
T Consensus 90 ~d~~~-~~~~lG~~~i~l~~---~~~~~~~W~~~l~~ 122 (133)
T cd08384 90 KDIGK-SNDYIGGLQLGINA---KGERLRHWLDCLKN 122 (133)
T ss_pred CCCCC-CccEEEEEEEecCC---CCchHHHHHHHHhC
Confidence 87765 88999999999985 44566789887654
No 161
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.49 E-value=1.8e-13 Score=133.22 Aligned_cols=102 Identities=21% Similarity=0.313 Sum_probs=87.6
Q ss_pred cCCceEEEEEEEEEeeCCCCCCCCCCCCCCCCcEEEEEECC-----------------------------eEEEeeeeee
Q 002002 422 LSPKLWYLRLTVIQTQDLQPGSGSEPKVRSPELYVKGQLGA-----------------------------QLFKTGRTSV 472 (983)
Q Consensus 422 ~~p~l~~L~V~Viea~~L~~~~~~~d~~~~sdpyv~v~lg~-----------------------------~~~rT~~~~~ 472 (983)
..|..+.|+|+|++|++|..+ |..|.+||||++.++. +..+|+++.
T Consensus 23 ~~~~~~~L~V~vi~a~~L~~~----d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~- 97 (153)
T cd08676 23 AEPPIFVLKVTVIEAKGLLAK----DVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKP- 97 (153)
T ss_pred cCCCeEEEEEEEEeccCCccc----CCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceec-
Confidence 367789999999999999987 8889999999999853 236777764
Q ss_pred ccCCCCCCCCcccceEEEEecCCCCCcEEEEEEeCcCCceeEEEEEecccccccccCCCCCcceEEec
Q 002002 473 GLSPSSSANPTWNEDLVFVAAEPFEPFLVVTVEDVTNGCSVGHARIQMSTVERRIDDRAEPKSRWFNL 540 (983)
Q Consensus 473 ~~~~~~t~nP~wne~f~f~~~~~~~~~L~i~V~D~d~d~~lG~~~i~L~~l~~~~~~~~~~~~~w~~L 540 (983)
+++||.|||.|.|.+.++..+.|.|+|||++ +++||++.++++++.. ...+.||+|
T Consensus 98 -----~tlnP~WnE~F~f~v~~~~~~~L~i~V~D~d-d~~IG~v~i~l~~l~~------~~~d~W~~L 153 (153)
T cd08676 98 -----QTLNPVWNETFRFEVEDVSNDQLHLDIWDHD-DDFLGCVNIPLKDLPS------CGLDSWFKL 153 (153)
T ss_pred -----CCCCCccccEEEEEeccCCCCEEEEEEEecC-CCeEEEEEEEHHHhCC------CCCCCeEeC
Confidence 6899999999999998776789999999987 8999999999999983 245899986
No 162
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.49 E-value=4e-14 Score=136.99 Aligned_cols=108 Identities=20% Similarity=0.329 Sum_probs=90.7
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEECC-----eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEe
Q 002002 5 CNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFDG-----QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYN 79 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~ 79 (983)
....|.|+|++|++|+..|..|.+||||++.+.. .+.+|+++++++||.|||+|.|.+... .+....|.|.|||
T Consensus 13 ~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~-~~~~~~l~~~v~d 91 (136)
T cd08404 13 TTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSE-ELEDISVEFLVLD 91 (136)
T ss_pred CCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHH-HhCCCEEEEEEEE
Confidence 3578999999999999999999999999999842 367899999999999999999998653 2335679999999
Q ss_pred CCCCCCCCCccEEEEEECccceecCCeeeEEEEceecC
Q 002002 80 DKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRS 117 (983)
Q Consensus 80 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~ 117 (983)
.+..+ ++++||++.+++.. .+.....|+.|....
T Consensus 92 ~d~~~-~~~~iG~~~~~~~~---~~~~~~~w~~l~~~~ 125 (136)
T cd08404 92 SDRVT-KNEVIGRLVLGPKA---SGSGGHHWKEVCNPP 125 (136)
T ss_pred CCCCC-CCccEEEEEECCcC---CCchHHHHHHHHhCC
Confidence 88886 89999999999988 245577898886553
No 163
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.49 E-value=1.8e-13 Score=131.58 Aligned_cols=103 Identities=33% Similarity=0.461 Sum_probs=88.8
Q ss_pred EEEEEEEceeccccccccCCCCCCCCCcEEEEEECC-----EEEEeeeecCCCCCeeceEEEEEEecC--CCEEEEEEEe
Q 002002 588 GLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP-----KWVRTRTILDRFNPRWNEQYTWDVYDP--CTVLTIGVFD 660 (983)
Q Consensus 588 g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~-----~~~rT~~~~~t~nP~Wne~~~~~v~~~--~~~l~i~v~D 660 (983)
|.|.|+|++|++|+.. +. .|.+||||.+.+.+ ...+|+++.++.||.|||+|.|.+... ...|.|+|||
T Consensus 13 ~~l~v~i~~a~nL~~~---~~-~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d 88 (131)
T cd04026 13 NKLTVEVREAKNLIPM---DP-NGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWD 88 (131)
T ss_pred CEEEEEEEEeeCCCCc---CC-CCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEE
Confidence 5799999999999654 55 67899999999863 678999999999999999999998754 4589999999
Q ss_pred CCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeeec
Q 002002 661 NGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVL 703 (983)
Q Consensus 661 ~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 703 (983)
++..+ +|++||++.++|+++... ....||+|...
T Consensus 89 ~~~~~--------~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~ 122 (131)
T cd04026 89 WDRTT--------RNDFMGSLSFGVSELIKM-PVDGWYKLLNQ 122 (131)
T ss_pred CCCCC--------CcceeEEEEEeHHHhCcC-ccCceEECcCc
Confidence 99876 688999999999999754 55789999865
No 164
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.49 E-value=7.1e-14 Score=135.26 Aligned_cols=103 Identities=19% Similarity=0.199 Sum_probs=85.3
Q ss_pred CcEEEEEEEceeccccccccCCCCCCCCCcEEEEEEC--C---EEEEeeeecCCCCCeeceEEEEEEec---CCCEEEEE
Q 002002 586 PIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYG--P---KWVRTRTILDRFNPRWNEQYTWDVYD---PCTVLTIG 657 (983)
Q Consensus 586 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~--~---~~~rT~~~~~t~nP~Wne~~~~~v~~---~~~~l~i~ 657 (983)
..+.|.|+|++|+||+.+ |. .|.+||||.+.+. + ...||+++++++||.|||+|.|.+.. ....|.|+
T Consensus 13 ~~~~L~V~vi~a~~L~~~---d~-~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~ 88 (136)
T cd08404 13 TTNRLTVVVLKARHLPKM---DV-SGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFL 88 (136)
T ss_pred CCCeEEEEEEEeeCCCcc---cc-CCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEE
Confidence 345799999999999765 55 7899999999984 2 35689999999999999999999864 34579999
Q ss_pred EEeCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeee
Q 002002 658 VFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTV 702 (983)
Q Consensus 658 v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 702 (983)
|||++.++ ++++||++.+++... +....+|+.|..
T Consensus 89 v~d~d~~~--------~~~~iG~~~~~~~~~--~~~~~~w~~l~~ 123 (136)
T cd08404 89 VLDSDRVT--------KNEVIGRLVLGPKAS--GSGGHHWKEVCN 123 (136)
T ss_pred EEECCCCC--------CCccEEEEEECCcCC--CchHHHHHHHHh
Confidence 99999987 678999999999983 444578887754
No 165
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.48 E-value=1.1e-13 Score=132.71 Aligned_cols=102 Identities=21% Similarity=0.170 Sum_probs=83.3
Q ss_pred CcEEEEEEEceeccccccccCCCCCCCCCcEEEEEECC-----EEEEeeeecCCCCCeeceEEEEEEec---CCCEEEEE
Q 002002 586 PIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP-----KWVRTRTILDRFNPRWNEQYTWDVYD---PCTVLTIG 657 (983)
Q Consensus 586 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~-----~~~rT~~~~~t~nP~Wne~~~~~v~~---~~~~l~i~ 657 (983)
..+.|.|+|++|+||+++ |. .|.+||||.+.+.+ .+.||+++++++||+|||+|.|.+.. ....|.|+
T Consensus 13 ~~~~L~V~Vi~A~nL~~~---~~-~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~ 88 (136)
T cd08406 13 TAERLTVVVVKARNLVWD---NG-KTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVT 88 (136)
T ss_pred CCCEEEEEEEEeeCCCCc---cC-CCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEE
Confidence 445899999999999876 45 78999999999832 25689999999999999999999864 34589999
Q ss_pred EEeCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEee
Q 002002 658 VFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLT 701 (983)
Q Consensus 658 v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 701 (983)
|||+|..+ ++++||++.|.... .|...++|..+.
T Consensus 89 V~~~d~~~--------~~~~iG~v~lg~~~--~g~~~~hW~~ml 122 (136)
T cd08406 89 VAESTEDG--------KTPNVGHVIIGPAA--SGMGLSHWNQML 122 (136)
T ss_pred EEeCCCCC--------CCCeeEEEEECCCC--CChhHHHHHHHH
Confidence 99999887 67799999997764 444457776555
No 166
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.48 E-value=1.8e-13 Score=132.47 Aligned_cols=108 Identities=26% Similarity=0.388 Sum_probs=89.6
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEEC--C---eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEe
Q 002002 5 CNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFD--G---QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYN 79 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~--~---~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~ 79 (983)
..+.|.|+|++|++|+.++..|.+||||+|.+. + .+++|+++++++||.|||+|.|.+... .+....|.|+|||
T Consensus 13 ~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~-~l~~~~l~~~v~d 91 (136)
T cd08402 13 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFE-QIQKVHLIVTVLD 91 (136)
T ss_pred CCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHH-HhCCCEEEEEEEe
Confidence 457899999999999999999999999999984 2 467899999999999999999998653 2334589999999
Q ss_pred CCCCCCCCCccEEEEEECccceecCCeeeEEEEceecC
Q 002002 80 DKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRS 117 (983)
Q Consensus 80 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~ 117 (983)
.+..+ ++++||++.+++... +.....|+++...+
T Consensus 92 ~~~~~-~~~~iG~~~i~~~~~---~~~~~~W~~~~~~~ 125 (136)
T cd08402 92 YDRIG-KNDPIGKVVLGCNAT---GAELRHWSDMLASP 125 (136)
T ss_pred CCCCC-CCceeEEEEECCccC---ChHHHHHHHHHhCC
Confidence 88876 899999999999763 45566787775543
No 167
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.48 E-value=5.9e-14 Score=135.89 Aligned_cols=104 Identities=25% Similarity=0.279 Sum_probs=86.4
Q ss_pred CCcEEEEEEEceeccccccccCCCCCCCCCcEEEEEECC-----EEEEeeeecCCCCCeeceEEEEEEecC---CCEEEE
Q 002002 585 SPIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP-----KWVRTRTILDRFNPRWNEQYTWDVYDP---CTVLTI 656 (983)
Q Consensus 585 ~~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~-----~~~rT~~~~~t~nP~Wne~~~~~v~~~---~~~l~i 656 (983)
+..|.|.|+|++|++|+.+ |. .|.+||||.+.+++ ...+|+++++++||.|||+|.|.+... ...|.|
T Consensus 12 ~~~~~l~V~Vi~a~~L~~~---d~-~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~ 87 (136)
T cd08402 12 PTAGKLTVVILEAKNLKKM---DV-GGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIV 87 (136)
T ss_pred CCCCeEEEEEEEeeCCCcc---cC-CCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEE
Confidence 4678999999999999765 55 78999999999842 356899999999999999999998643 237999
Q ss_pred EEEeCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeee
Q 002002 657 GVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTV 702 (983)
Q Consensus 657 ~v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 702 (983)
+|||++..+ +|++||++.|++... +....+|+++..
T Consensus 88 ~v~d~~~~~--------~~~~iG~~~i~~~~~--~~~~~~W~~~~~ 123 (136)
T cd08402 88 TVLDYDRIG--------KNDPIGKVVLGCNAT--GAELRHWSDMLA 123 (136)
T ss_pred EEEeCCCCC--------CCceeEEEEECCccC--ChHHHHHHHHHh
Confidence 999999987 788999999999864 445578887763
No 168
>PLN03008 Phospholipase D delta
Probab=99.48 E-value=2.3e-13 Score=159.72 Aligned_cols=104 Identities=23% Similarity=0.325 Sum_probs=90.2
Q ss_pred CCCCeEEEEEECCe-EEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCCCCCCccEEEEEECccceecC
Q 002002 26 GTASAYVIVDFDGQ-RRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKTGKRSTFLGKVKIAGSTFAKVG 104 (983)
Q Consensus 26 g~~dPyv~v~~~~~-~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~~~d~~lG~~~i~l~~l~~~~ 104 (983)
+++||||+|.++++ ..||+++++++||+|||+|.|.+..+ ...|.|.|||++.++ +++||++.||+.++. .+
T Consensus 75 ~tSDPYV~I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah~----~s~L~f~VkD~D~~g--aD~IG~a~IPL~~L~-~G 147 (868)
T PLN03008 75 ITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHP----FAYLEFQVKDDDVFG--AQIIGTAKIPVRDIA-SG 147 (868)
T ss_pred CCCCceEEEEECCcceeeEEeCCCCCCCCcceeEEEEecCC----CceEEEEEEcCCccC--CceeEEEEEEHHHcC-CC
Confidence 47899999999875 56999999999999999999999876 579999999988884 689999999999988 67
Q ss_pred CeeeEEEEceecCCcce-eeeEEEEEEEEecCC
Q 002002 105 SESSVYYPLEKRSVFSQ-IKGEIGLKVYYIDED 136 (983)
Q Consensus 105 ~~~~~w~~L~~~~~~s~-~~G~l~l~i~~~~~~ 136 (983)
+..+.|++|.+..++.. ..|+|++++.|.+..
T Consensus 148 e~vd~Wl~Ll~~~~kp~k~~~kl~v~lqf~pv~ 180 (868)
T PLN03008 148 ERISGWFPVLGASGKPPKAETAIFIDMKFTPFD 180 (868)
T ss_pred CceEEEEEccccCCCCCCCCcEEEEEEEEEEcc
Confidence 88899999988866543 457999999998744
No 169
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.48 E-value=5.4e-14 Score=135.70 Aligned_cols=104 Identities=22% Similarity=0.316 Sum_probs=86.9
Q ss_pred CCcEEEEEEEceeccccccccCCCCCCCCCcEEEEEECC-----EEEEeeeecCCCCCeeceEEEEEEecC---CCEEEE
Q 002002 585 SPIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP-----KWVRTRTILDRFNPRWNEQYTWDVYDP---CTVLTI 656 (983)
Q Consensus 585 ~~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~-----~~~rT~~~~~t~nP~Wne~~~~~v~~~---~~~l~i 656 (983)
+..|.|.|+|++|+||+++ |. .|.+||||++.+.+ ...+|+++++++||.|||+|.|.+... ...|.|
T Consensus 10 ~~~~~L~V~Vi~a~~L~~~---d~-~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~ 85 (133)
T cd08384 10 TQRRGLIVGIIRCVNLAAM---DA-NGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEI 85 (133)
T ss_pred CCCCEEEEEEEEEcCCCCc---CC-CCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEE
Confidence 3568999999999999776 55 78899999999853 467999999999999999999998643 358999
Q ss_pred EEEeCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeee
Q 002002 657 GVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTV 702 (983)
Q Consensus 657 ~v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 702 (983)
+|||++..+ +|++||.+.+++.. .+....+||.+..
T Consensus 86 ~V~d~d~~~--------~~~~lG~~~i~l~~--~~~~~~~W~~~l~ 121 (133)
T cd08384 86 TVWDKDIGK--------SNDYIGGLQLGINA--KGERLRHWLDCLK 121 (133)
T ss_pred EEEeCCCCC--------CccEEEEEEEecCC--CCchHHHHHHHHh
Confidence 999999876 67899999999986 3444578887764
No 170
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.48 E-value=4.7e-13 Score=122.49 Aligned_cols=80 Identities=23% Similarity=0.401 Sum_probs=67.7
Q ss_pred EEEEEceeccccccccCCCCCCCCCcEEEEEECC-----EEEEeeeecCCCCCeeceEEEEEEecCCCEEEEEEEeCC--
Q 002002 590 LEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP-----KWVRTRTILDRFNPRWNEQYTWDVYDPCTVLTIGVFDNG-- 662 (983)
Q Consensus 590 L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~-----~~~rT~~~~~t~nP~Wne~~~~~v~~~~~~l~i~v~D~d-- 662 (983)
|.|+|++|+|| .|.+||||.+.+.+ ...||+++.+|+||+|||+|.|++.. ...|.+.|||++
T Consensus 1 L~V~V~~A~~L---------~~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~-s~~L~~~v~d~~~~ 70 (118)
T cd08686 1 LNVIVHSAQGF---------KQSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG-SQTLRILCYEKCYS 70 (118)
T ss_pred CEEEEEeCCCC---------CCCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC-CCEEEEEEEEcccc
Confidence 57999999999 45699999998853 46899999999999999999999964 679999999984
Q ss_pred -----CCCCcCCCCCCCCceeEEEEEEccc
Q 002002 663 -----RYKRDEAGKPGKDVRVGKIRVRLST 687 (983)
Q Consensus 663 -----~~~~~~~~~~~~d~~lG~~~i~l~~ 687 (983)
..+ .|+++|+..|.|..
T Consensus 71 ~~~~d~~~--------~d~~~G~g~i~Ld~ 92 (118)
T cd08686 71 KVKLDGEG--------TDAIMGKGQIQLDP 92 (118)
T ss_pred cccccccC--------cccEEEEEEEEECH
Confidence 333 78899888887743
No 171
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.47 E-value=5.8e-13 Score=127.66 Aligned_cols=117 Identities=19% Similarity=0.268 Sum_probs=97.0
Q ss_pred cEEEEEEEEeeCCCCCC--CCCCCCeEEEEEEC------CeEEeeeCcCCCC-CCeeeeEEEEEeeecCCCCCceEEEEE
Q 002002 7 RKLIVEVCNAKNLMPKD--GQGTASAYVIVDFD------GQRRRTKTKFRDL-NPQWDERLEFLVHDAESMPTEILEINL 77 (983)
Q Consensus 7 ~~L~V~v~~a~~L~~~d--~~g~~dPyv~v~~~------~~~~~T~~~~~t~-nP~WnE~f~f~v~~~~~l~~~~L~v~V 77 (983)
+.|+|+|++|++|+..+ ..+.+||||++++. ..+++|+++.++. ||.|||+|.|.+..++ ...|.|+|
T Consensus 2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~---~~~l~~~V 78 (128)
T cd00275 2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPE---LAFLRFVV 78 (128)
T ss_pred eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCC---eEEEEEEE
Confidence 57999999999999988 47899999999993 4678999988775 9999999999998653 45799999
Q ss_pred EeCCCCCCCCCccEEEEEECccceecCCeeeEEEEceecCCcceeeeEEEEEEEE
Q 002002 78 YNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQIKGEIGLKVYY 132 (983)
Q Consensus 78 ~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~s~~~G~l~l~i~~ 132 (983)
||.+.. ++++||++.++++++. . ...|++|.+..+.....|.|.+++.+
T Consensus 79 ~d~~~~--~~~~iG~~~~~l~~l~-~---g~~~~~l~~~~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 79 YDEDSG--DDDFLGQACLPLDSLR-Q---GYRHVPLLDSKGEPLELSTLFVHIDI 127 (128)
T ss_pred EeCCCC--CCcEeEEEEEEhHHhc-C---ceEEEEecCCCCCCCcceeEEEEEEE
Confidence 987765 7899999999999985 2 35789998776654566999998864
No 172
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.47 E-value=2.1e-13 Score=131.39 Aligned_cols=96 Identities=27% Similarity=0.422 Sum_probs=83.4
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEEC-------CeEEeeeCcCCCCCCeeeeEEEEEeeecC-CCCCceEEEE
Q 002002 5 CNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFD-------GQRRRTKTKFRDLNPQWDERLEFLVHDAE-SMPTEILEIN 76 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~-------~~~~~T~~~~~t~nP~WnE~f~f~v~~~~-~l~~~~L~v~ 76 (983)
....|.|+|++|++|+..+..|.+||||+|.+. ..+++|+++++++||+|||+|.|.+.... .+....|.|.
T Consensus 14 ~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~ 93 (133)
T cd04009 14 SEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFT 93 (133)
T ss_pred CCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEE
Confidence 347899999999999999988999999999985 35789999999999999999999986531 1235689999
Q ss_pred EEeCCCCCCCCCccEEEEEECccce
Q 002002 77 LYNDKKTGKRSTFLGKVKIAGSTFA 101 (983)
Q Consensus 77 V~~~~~~~~~d~~lG~~~i~l~~l~ 101 (983)
|||.+..+ ++++||++.+++.++.
T Consensus 94 V~d~d~~~-~d~~iG~~~i~l~~l~ 117 (133)
T cd04009 94 VKDYDLLG-SNDFEGEAFLPLNDIP 117 (133)
T ss_pred EEecCCCC-CCcEeEEEEEeHHHCC
Confidence 99988875 7999999999999987
No 173
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.47 E-value=2.2e-13 Score=131.03 Aligned_cols=106 Identities=32% Similarity=0.535 Sum_probs=92.2
Q ss_pred cEEEEEEEEeeCCCCCCCCCCCCeEEEEEECC-----eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCC
Q 002002 7 RKLIVEVCNAKNLMPKDGQGTASAYVIVDFDG-----QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDK 81 (983)
Q Consensus 7 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~ 81 (983)
..|.|+|++|++|+..+..|.+||||+|.+.+ .+++|++++++.||.|||+|.|.+...+ ....|.|.|||.+
T Consensus 13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~--~~~~l~v~v~d~~ 90 (131)
T cd04026 13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPAD--KDRRLSIEVWDWD 90 (131)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchh--cCCEEEEEEEECC
Confidence 68999999999999999889999999999953 6899999999999999999999987542 2568999999887
Q ss_pred CCCCCCCccEEEEEECccceecCCeeeEEEEceecC
Q 002002 82 KTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRS 117 (983)
Q Consensus 82 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~ 117 (983)
..+ ++++||++.+++.++... ....||+|.+..
T Consensus 91 ~~~-~~~~iG~~~~~l~~l~~~--~~~~w~~L~~~~ 123 (131)
T cd04026 91 RTT-RNDFMGSLSFGVSELIKM--PVDGWYKLLNQE 123 (131)
T ss_pred CCC-CcceeEEEEEeHHHhCcC--ccCceEECcCcc
Confidence 765 889999999999998732 677899998763
No 174
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.47 E-value=2.7e-13 Score=128.73 Aligned_cols=90 Identities=23% Similarity=0.345 Sum_probs=79.7
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCeEEEEEECCeE--EeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCCC
Q 002002 8 KLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQR--RRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKTGK 85 (983)
Q Consensus 8 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~--~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~~ 85 (983)
.|+|.|++|++|...|..|.+||||++.++++. .+|+++++++||.|||+|.|.+..+. ...|.|+|||.+..+
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~---~~~L~~~V~d~d~~~- 76 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPG---NSILKISVMDYDLLG- 76 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCC---CCEEEEEEEECCCCC-
Confidence 379999999999999999999999999998854 57888899999999999999986543 578999999988876
Q ss_pred CCCccEEEEEECccce
Q 002002 86 RSTFLGKVKIAGSTFA 101 (983)
Q Consensus 86 ~d~~lG~~~i~l~~l~ 101 (983)
+|++||++.+++.+..
T Consensus 77 ~dd~iG~~~i~l~~~~ 92 (124)
T cd04037 77 SDDLIGETVIDLEDRF 92 (124)
T ss_pred CCceeEEEEEeecccc
Confidence 8999999999998754
No 175
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.46 E-value=4.3e-14 Score=149.98 Aligned_cols=102 Identities=32% Similarity=0.481 Sum_probs=88.0
Q ss_pred EEEEEEceeccccccccCCCCCCCCCcEEEEEECC-----EEEEeeeecCCCCCeeceEEEEEEec--CCCEEEEEEEeC
Q 002002 589 LLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP-----KWVRTRTILDRFNPRWNEQYTWDVYD--PCTVLTIGVFDN 661 (983)
Q Consensus 589 ~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~-----~~~rT~~~~~t~nP~Wne~~~~~v~~--~~~~l~i~v~D~ 661 (983)
.|.|.|.+|+||.+| |. +|-||||+.+++-. .+.+|+|++.++||+|||+|+|.+.. ....|.|+||||
T Consensus 181 ~l~v~i~ea~NLiPM---Dp-NGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDW 256 (683)
T KOG0696|consen 181 VLTVTIKEAKNLIPM---DP-NGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDW 256 (683)
T ss_pred eEEEEehhhcccccc---CC-CCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEecc
Confidence 689999999999999 56 89999999999853 46799999999999999999999864 455899999999
Q ss_pred CCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeeec
Q 002002 662 GRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVL 703 (983)
Q Consensus 662 d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 703 (983)
|+.+ +++|+|...+.+++|... +...||.|...
T Consensus 257 DrTs--------RNDFMGslSFgisEl~K~-p~~GWyKlLsq 289 (683)
T KOG0696|consen 257 DRTS--------RNDFMGSLSFGISELQKA-PVDGWYKLLSQ 289 (683)
T ss_pred cccc--------cccccceecccHHHHhhc-chhhHHHHhhh
Confidence 9988 667999999999998753 34678887754
No 176
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.46 E-value=4.8e-13 Score=129.50 Aligned_cols=103 Identities=24% Similarity=0.259 Sum_probs=84.7
Q ss_pred CcEEEEEEEceeccccccccCCCCCCCCCcEEEEEE--CC---EEEEeeeecCCCCCeeceEEEEEEec--C-CCEEEEE
Q 002002 586 PIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKY--GP---KWVRTRTILDRFNPRWNEQYTWDVYD--P-CTVLTIG 657 (983)
Q Consensus 586 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~--~~---~~~rT~~~~~t~nP~Wne~~~~~v~~--~-~~~l~i~ 657 (983)
..|.|.|+|++|+||+.+ |. .|++||||++.+ ++ ...||+++++++||.|||.|.|.+.. . ...|.|+
T Consensus 13 ~~~~L~v~vi~a~~L~~~---~~-~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~ 88 (136)
T cd08405 13 TANRITVNIIKARNLKAM---DI-NGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIIT 88 (136)
T ss_pred CCCeEEEEEEEeeCCCcc---cc-CCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEE
Confidence 457899999999999665 55 789999999987 32 35689999999999999999999752 2 3489999
Q ss_pred EEeCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeee
Q 002002 658 VFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTV 702 (983)
Q Consensus 658 v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 702 (983)
|||++..+ +|++||++.+++.+. +...++|+.+..
T Consensus 89 v~d~~~~~--------~~~~lG~~~i~~~~~--~~~~~~w~~~~~ 123 (136)
T cd08405 89 VMDKDRLS--------RNDLIGKIYLGWKSG--GLELKHWKDMLS 123 (136)
T ss_pred EEECCCCC--------CCcEeEEEEECCccC--CchHHHHHHHHh
Confidence 99999887 678999999999886 444567776654
No 177
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.46 E-value=2.8e-13 Score=130.65 Aligned_cols=108 Identities=19% Similarity=0.294 Sum_probs=89.1
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEEC---C---eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEE
Q 002002 5 CNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFD---G---QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLY 78 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~---~---~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~ 78 (983)
...+|.|+|++|+||++++..|.+||||++.+. + .+++|+++++++||+|||+|.|.+.. +++....|.|.||
T Consensus 13 ~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~-~~l~~~~L~~~V~ 91 (138)
T cd08408 13 LTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVAL-FQLSEVTLMFSVY 91 (138)
T ss_pred CCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCH-HHhCccEEEEEEE
Confidence 468899999999999999999999999999983 2 35789999999999999999999875 3455789999999
Q ss_pred eCCCCCCCCCccEEEEEECccceecCCeeeEEEEceec
Q 002002 79 NDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKR 116 (983)
Q Consensus 79 ~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~ 116 (983)
+.+..+ ++++||++.+++...- .+...+|+.+...
T Consensus 92 ~~~~~~-~~~~iG~v~l~~~~~~--~~~~~hW~~~l~~ 126 (138)
T cd08408 92 NKRKMK-RKEMIGWFSLGLNSSG--EEEEEHWNEMKES 126 (138)
T ss_pred ECCCCC-CCcEEEEEEECCcCCC--chHHHHHHHHHhC
Confidence 988876 8999999999887532 1234577776543
No 178
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.46 E-value=3.8e-13 Score=127.72 Aligned_cols=90 Identities=28% Similarity=0.384 Sum_probs=78.2
Q ss_pred EEEEEEceeccccccccCCCCCCCCCcEEEEEECCEE--EEeeeecCCCCCeeceEEEEEEecC-CCEEEEEEEeCCCCC
Q 002002 589 LLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKW--VRTRTILDRFNPRWNEQYTWDVYDP-CTVLTIGVFDNGRYK 665 (983)
Q Consensus 589 ~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~~~--~rT~~~~~t~nP~Wne~~~~~v~~~-~~~l~i~v~D~d~~~ 665 (983)
+|+|.|++|+||+.+ |. .|++||||++++++.. .||+++++++||+|||+|.|.+..+ ...|.|+|||++..+
T Consensus 1 ~lrV~Vi~a~~L~~~---d~-~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~ 76 (124)
T cd04037 1 LVRVYVVRARNLQPK---DP-NGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLG 76 (124)
T ss_pred CEEEEEEECcCCCCC---CC-CCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCC
Confidence 378999999999765 56 7899999999998854 5788899999999999999998655 458999999999987
Q ss_pred CcCCCCCCCCceeEEEEEEcccccC
Q 002002 666 RDEAGKPGKDVRVGKIRVRLSTLDT 690 (983)
Q Consensus 666 ~~~~~~~~~d~~lG~~~i~l~~l~~ 690 (983)
+|++||++.++|.+..-
T Consensus 77 --------~dd~iG~~~i~l~~~~~ 93 (124)
T cd04037 77 --------SDDLIGETVIDLEDRFF 93 (124)
T ss_pred --------CCceeEEEEEeeccccc
Confidence 68899999999987653
No 179
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.46 E-value=9.2e-14 Score=134.54 Aligned_cols=107 Identities=23% Similarity=0.368 Sum_probs=88.6
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEEC--C---eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEe
Q 002002 5 CNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFD--G---QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYN 79 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~--~---~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~ 79 (983)
..+.|.|+|++|+||...+..|.+||||+|.+. + .+++|+++++++||.|||+|.|.+... .+....|.|+|||
T Consensus 13 ~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~-~~~~~~l~~~v~d 91 (136)
T cd08405 13 TANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLE-RLRETTLIITVMD 91 (136)
T ss_pred CCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHH-HhCCCEEEEEEEE
Confidence 457899999999999999999999999999982 2 467899999999999999999998642 2335689999999
Q ss_pred CCCCCCCCCccEEEEEECccceecCCeeeEEEEceec
Q 002002 80 DKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKR 116 (983)
Q Consensus 80 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~ 116 (983)
.+..+ ++++||++.+++... +.....|+.+...
T Consensus 92 ~~~~~-~~~~lG~~~i~~~~~---~~~~~~w~~~~~~ 124 (136)
T cd08405 92 KDRLS-RNDLIGKIYLGWKSG---GLELKHWKDMLSK 124 (136)
T ss_pred CCCCC-CCcEeEEEEECCccC---CchHHHHHHHHhC
Confidence 88876 889999999999874 4556677776544
No 180
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.45 E-value=3.9e-13 Score=127.07 Aligned_cols=95 Identities=22% Similarity=0.279 Sum_probs=80.7
Q ss_pred ceeccccccccCCCCCCCCCcEEEEEECCE-------EEEeeeecCCCCCeeceEEEEEEe-cCCCEEEEEEEeCCC---
Q 002002 595 RGATNLLPVKTKDGTRGTTDAYVVAKYGPK-------WVRTRTILDRFNPRWNEQYTWDVY-DPCTVLTIGVFDNGR--- 663 (983)
Q Consensus 595 ~~a~~L~~~~~~d~~~g~sDpy~~~~~~~~-------~~rT~~~~~t~nP~Wne~~~~~v~-~~~~~l~i~v~D~d~--- 663 (983)
++|++|+.+ |. .|++||||++++.+. ..||+++++++||.|||.|.|.+. +....|.|+|||++.
T Consensus 7 i~a~~L~~~---d~-~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~ 82 (120)
T cd04048 7 ISCRNLLDK---DV-LSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSK 82 (120)
T ss_pred EEccCCCCC---CC-CCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcC
Confidence 789999765 56 789999999998653 489999999999999999999864 455689999999997
Q ss_pred -CCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEee
Q 002002 664 -YKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLT 701 (983)
Q Consensus 664 -~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 701 (983)
.+ .|++||.+.+++++|..+.....+++|.
T Consensus 83 ~~~--------~~d~iG~~~i~l~~l~~~~~~~~~~~l~ 113 (120)
T cd04048 83 DLS--------DHDFLGEAECTLGEIVSSPGQKLTLPLK 113 (120)
T ss_pred CCC--------CCcEEEEEEEEHHHHhcCCCcEEEEEcc
Confidence 55 6789999999999998776567788884
No 181
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.44 E-value=1.4e-13 Score=133.04 Aligned_cols=108 Identities=22% Similarity=0.331 Sum_probs=88.8
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEECC-----eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEe
Q 002002 5 CNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFDG-----QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYN 79 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~ 79 (983)
....|.|+|++|+||++.+ .+.+||||++.+.. .+++|+++++++||.|||+|.|.+.. +.+....|.|.||+
T Consensus 13 ~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~-~~l~~~~L~~~V~~ 90 (137)
T cd08409 13 TLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTS-RQLDTASLSLSVMQ 90 (137)
T ss_pred CCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCH-HHhCccEEEEEEEe
Confidence 4578999999999999998 78899999999843 46789999999999999999999865 34556789999998
Q ss_pred CCCCCCCCCccEEEEEECccceecCCeeeEEEEceec
Q 002002 80 DKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKR 116 (983)
Q Consensus 80 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~ 116 (983)
.+..+ ++++||++.+...... .++....|..+...
T Consensus 91 ~~~~~-~~~~lG~v~ig~~~~~-~~~~~~hW~~~~~~ 125 (137)
T cd08409 91 SGGVR-KSKLLGRVVLGPFMYA-RGKELEHWNDMLSK 125 (137)
T ss_pred CCCCC-CcceEEEEEECCcccC-CChHHHHHHHHHhC
Confidence 88765 8999999999865543 44556677776544
No 182
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.44 E-value=1.7e-13 Score=132.28 Aligned_cols=104 Identities=26% Similarity=0.264 Sum_probs=84.4
Q ss_pred CCcEEEEEEEceeccccccccCCCCCCCCCcEEEEEEC--C---EEEEeeeecCCCCCeeceEEEEEEecC---CCEEEE
Q 002002 585 SPIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYG--P---KWVRTRTILDRFNPRWNEQYTWDVYDP---CTVLTI 656 (983)
Q Consensus 585 ~~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~--~---~~~rT~~~~~t~nP~Wne~~~~~v~~~---~~~l~i 656 (983)
+..|.|+|+|++|++|+++ |. .|.+||||.+++. + ...+|+++.+++||.|||.|.|.+... ...|.|
T Consensus 11 ~~~~~L~V~v~~A~~L~~~---d~-~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~ 86 (134)
T cd08403 11 PTAGRLTLTIIKARNLKAM---DI-TGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLII 86 (134)
T ss_pred CCCCEEEEEEEEeeCCCcc---cc-CCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEE
Confidence 3568999999999999766 55 7899999999984 2 366999999999999999999998532 236999
Q ss_pred EEEeCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeee
Q 002002 657 GVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTV 702 (983)
Q Consensus 657 ~v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 702 (983)
+|||++..+ +|++||++.|++... +....+|+.+..
T Consensus 87 ~v~d~~~~~--------~~~~IG~~~l~~~~~--~~~~~~w~~~~~ 122 (134)
T cd08403 87 AVVDYDRVG--------HNELIGVCRVGPNAD--GQGREHWNEMLA 122 (134)
T ss_pred EEEECCCCC--------CCceeEEEEECCCCC--CchHHHHHHHHH
Confidence 999999987 688999999998743 333477776653
No 183
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.44 E-value=1.4e-13 Score=132.77 Aligned_cols=109 Identities=18% Similarity=0.345 Sum_probs=87.1
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEEC-C----eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEe
Q 002002 5 CNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFD-G----QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYN 79 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~-~----~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~ 79 (983)
..+.|.|+|++|++|+..|..|.+||||++.+. + .+++|+++++++||.|||+|.|.+... .+....|.|.|||
T Consensus 12 ~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~-~l~~~~l~~~V~d 90 (135)
T cd08410 12 SAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQE-ELENVSLVFTVYG 90 (135)
T ss_pred CCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHH-HhCCCEEEEEEEe
Confidence 347899999999999999999999999999972 2 467899999999999999999998542 2334579999998
Q ss_pred CCCCCCCCCccEEEEEECccceecCCeeeEEEEceecC
Q 002002 80 DKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRS 117 (983)
Q Consensus 80 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~ 117 (983)
.+..+ ++++||++.+..... .+.....|+.|....
T Consensus 91 ~d~~~-~~~~iG~~~l~~~~~--~~~~~~~W~~l~~~~ 125 (135)
T cd08410 91 HNVKS-SNDFIGRIVIGQYSS--GPSETNHWRRMLNSQ 125 (135)
T ss_pred CCCCC-CCcEEEEEEEcCccC--CchHHHHHHHHHhCC
Confidence 87765 899999998765332 233457788876653
No 184
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.44 E-value=5.4e-13 Score=126.16 Aligned_cols=98 Identities=19% Similarity=0.275 Sum_probs=83.3
Q ss_pred EEEEeeCCCCCCCCCCCCeEEEEEECCe-------EEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCC--
Q 002002 12 EVCNAKNLMPKDGQGTASAYVIVDFDGQ-------RRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKK-- 82 (983)
Q Consensus 12 ~v~~a~~L~~~d~~g~~dPyv~v~~~~~-------~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~-- 82 (983)
-.++|++|+.++..|.+||||++.+.+. .++|+++++++||.|||+|.|.+.... ...|.|+|||.+.
T Consensus 5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~---~~~l~~~V~d~d~~~ 81 (120)
T cd04048 5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEE---VQKLRFEVYDVDSKS 81 (120)
T ss_pred EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEe---eeEEEEEEEEecCCc
Confidence 3478999999999999999999999664 489999999999999999999865432 5689999999876
Q ss_pred --CCCCCCccEEEEEECccceecCCeeeEEEEce
Q 002002 83 --TGKRSTFLGKVKIAGSTFAKVGSESSVYYPLE 114 (983)
Q Consensus 83 --~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~ 114 (983)
.+ ++++||++.+++.++. .+.....|++|.
T Consensus 82 ~~~~-~~d~iG~~~i~l~~l~-~~~~~~~~~~l~ 113 (120)
T cd04048 82 KDLS-DHDFLGEAECTLGEIV-SSPGQKLTLPLK 113 (120)
T ss_pred CCCC-CCcEEEEEEEEHHHHh-cCCCcEEEEEcc
Confidence 54 8999999999999998 445666788883
No 185
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.44 E-value=6.4e-13 Score=125.22 Aligned_cols=104 Identities=23% Similarity=0.328 Sum_probs=83.9
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEEC--C---eEEeeeCcCCCC-CCeeeeEEEEEeeecCCCCCceEEEEEE
Q 002002 5 CNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFD--G---QRRRTKTKFRDL-NPQWDERLEFLVHDAESMPTEILEINLY 78 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~--~---~~~~T~~~~~t~-nP~WnE~f~f~v~~~~~l~~~~L~v~V~ 78 (983)
..++|.|+|++|+||++.+..+.+||||+|++. + .+++|+++++|+ ||.|||+|.|.+.... .+-.|.|+||
T Consensus 12 ~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~--~~v~l~v~v~ 89 (135)
T cd08692 12 VNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQE--HGIQFLIKLY 89 (135)
T ss_pred cCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchh--heeEEEEEEE
Confidence 457899999999999998667788999999983 2 578899999995 6999999999998642 3568899999
Q ss_pred eCCCCCCCCCccEEEEEECccceecCCeeeEEEEc
Q 002002 79 NDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPL 113 (983)
Q Consensus 79 ~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L 113 (983)
|.+..+ ++++||++.+..+... +....+|...
T Consensus 90 d~~~~~-~n~~IG~v~lG~~~~~--~~~~~hW~~m 121 (135)
T cd08692 90 SRSSVR-RKHFLGQVWISSDSSS--SEAVEQWKDT 121 (135)
T ss_pred eCCCCc-CCceEEEEEECCccCC--chhhhhHHHH
Confidence 888776 8999999999987632 2334566554
No 186
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.43 E-value=7e-13 Score=126.04 Aligned_cols=95 Identities=24% Similarity=0.421 Sum_probs=81.4
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEEC-----CeEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEe
Q 002002 5 CNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFD-----GQRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYN 79 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~-----~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~ 79 (983)
..+.|.|+|++|++|++.+..+.+||||++.+. ..+++|+++++++||.|||+|.|......++....|.|+|||
T Consensus 13 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d 92 (123)
T cd04035 13 ANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLD 92 (123)
T ss_pred CCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEE
Confidence 457899999999999999888999999999983 257899999999999999999997443333345789999998
Q ss_pred CCCCCCCCCccEEEEEECccce
Q 002002 80 DKKTGKRSTFLGKVKIAGSTFA 101 (983)
Q Consensus 80 ~~~~~~~d~~lG~~~i~l~~l~ 101 (983)
.+.. ++++||++.++++++.
T Consensus 93 ~~~~--~~~~iG~~~i~l~~l~ 112 (123)
T cd04035 93 EDRF--GNDFLGETRIPLKKLK 112 (123)
T ss_pred cCCc--CCeeEEEEEEEcccCC
Confidence 7766 6889999999999988
No 187
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.43 E-value=9.6e-13 Score=126.95 Aligned_cols=105 Identities=19% Similarity=0.213 Sum_probs=82.8
Q ss_pred CCcEEEEEEEceeccccccccCCCCCCCCCcEEEEEEC--C---EEEEeeeecCCCCCeeceEEEEEEec--CC-CEEEE
Q 002002 585 SPIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYG--P---KWVRTRTILDRFNPRWNEQYTWDVYD--PC-TVLTI 656 (983)
Q Consensus 585 ~~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~--~---~~~rT~~~~~t~nP~Wne~~~~~v~~--~~-~~l~i 656 (983)
+..|.|.|+|++|++|+.+ |. .|.+||||.+.+. . ...+|+++++++||.|||+|.|.+.. .+ ..|.|
T Consensus 11 ~~~~~L~V~vi~a~~L~~~---d~-~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~ 86 (135)
T cd08410 11 PSAGRLNVDIIRAKQLLQT---DM-SQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVF 86 (135)
T ss_pred CCCCeEEEEEEEecCCCcc---cC-CCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEE
Confidence 4568999999999999766 55 7899999999973 2 35799999999999999999999853 22 37999
Q ss_pred EEEeCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeee
Q 002002 657 GVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTV 702 (983)
Q Consensus 657 ~v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 702 (983)
+|||++..+ +|++||++.|....... ...++|+.+..
T Consensus 87 ~V~d~d~~~--------~~~~iG~~~l~~~~~~~-~~~~~W~~l~~ 123 (135)
T cd08410 87 TVYGHNVKS--------SNDFIGRIVIGQYSSGP-SETNHWRRMLN 123 (135)
T ss_pred EEEeCCCCC--------CCcEEEEEEEcCccCCc-hHHHHHHHHHh
Confidence 999999877 78899999876544322 22367776654
No 188
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.43 E-value=2.1e-12 Score=123.75 Aligned_cols=117 Identities=21% Similarity=0.294 Sum_probs=93.7
Q ss_pred EEEEEEceeccccccccCCCCCCCCCcEEEEEE------CCEEEEeeeecCCC-CCeeceEEEEEEecCC-CEEEEEEEe
Q 002002 589 LLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKY------GPKWVRTRTILDRF-NPRWNEQYTWDVYDPC-TVLTIGVFD 660 (983)
Q Consensus 589 ~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~------~~~~~rT~~~~~t~-nP~Wne~~~~~v~~~~-~~l~i~v~D 660 (983)
.|+|+|++|+||+.++. +. .+..||||++++ .....||+++.++. ||.|||+|.|.+..+. ..|.|+|||
T Consensus 3 ~l~v~vi~a~~L~~~~~-~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d 80 (128)
T cd00275 3 TLTIKIISGQQLPKPKG-DK-GSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYD 80 (128)
T ss_pred EEEEEEEeeecCCCCCC-CC-CCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEe
Confidence 58999999999977631 13 678999999998 34678999998876 9999999999998665 479999999
Q ss_pred CCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeeecCCCCCccceEEEEEEEE
Q 002002 661 NGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLPGGAKKMGEIEIAVRF 720 (983)
Q Consensus 661 ~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~f 720 (983)
++.. +|++||.+.+++++|..|. .+++|....... ...|.|.+.+++
T Consensus 81 ~~~~---------~~~~iG~~~~~l~~l~~g~---~~~~l~~~~~~~-~~~~~l~v~~~~ 127 (128)
T cd00275 81 EDSG---------DDDFLGQACLPLDSLRQGY---RHVPLLDSKGEP-LELSTLFVHIDI 127 (128)
T ss_pred CCCC---------CCcEeEEEEEEhHHhcCce---EEEEecCCCCCC-CcceeEEEEEEE
Confidence 9875 3669999999999997764 578888653331 335889888765
No 189
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.43 E-value=2.5e-13 Score=131.11 Aligned_cols=107 Identities=22% Similarity=0.382 Sum_probs=87.5
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEEC--C---eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEe
Q 002002 5 CNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFD--G---QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYN 79 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~--~---~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~ 79 (983)
..+.|.|+|++|++|++++..|.+||||+|.+. + .+++|+++++++||.|||+|.|.+... .+....|.|+|||
T Consensus 12 ~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~-~~~~~~l~~~v~d 90 (134)
T cd08403 12 TAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPE-NVDNVSLIIAVVD 90 (134)
T ss_pred CCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHH-HhCCCEEEEEEEE
Confidence 457899999999999999999999999999983 2 367899999999999999999998542 2334579999999
Q ss_pred CCCCCCCCCccEEEEEECccceecCCeeeEEEEceec
Q 002002 80 DKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKR 116 (983)
Q Consensus 80 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~ 116 (983)
.+..+ ++++||++.+++.. .+.....|+.+...
T Consensus 91 ~~~~~-~~~~IG~~~l~~~~---~~~~~~~w~~~~~~ 123 (134)
T cd08403 91 YDRVG-HNELIGVCRVGPNA---DGQGREHWNEMLAN 123 (134)
T ss_pred CCCCC-CCceeEEEEECCCC---CCchHHHHHHHHHC
Confidence 88876 89999999999773 33445677776444
No 190
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.42 E-value=3.6e-13 Score=130.24 Aligned_cols=108 Identities=27% Similarity=0.440 Sum_probs=92.4
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEECC-----eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEe
Q 002002 5 CNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFDG-----QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYN 79 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~ 79 (983)
..+.|.|+|++|++|+..+..+.+||||++.+.+ .+++|+++.++.||.|||+|.|.+... .+....|.|+|||
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~-~l~~~~l~~~v~d 90 (134)
T cd00276 12 TAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAE-QLEEVSLVITVVD 90 (134)
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHH-HhCCcEEEEEEEe
Confidence 3578999999999999999889999999999854 367999999999999999999998663 2335789999998
Q ss_pred CCCCCCCCCccEEEEEECccceecCCeeeEEEEceecC
Q 002002 80 DKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRS 117 (983)
Q Consensus 80 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~ 117 (983)
.+..+ ++++||++.++++. .+.....|++|.+..
T Consensus 91 ~~~~~-~~~~lG~~~i~l~~---~~~~~~~W~~l~~~~ 124 (134)
T cd00276 91 KDSVG-RNEVIGQVVLGPDS---GGEELEHWNEMLASP 124 (134)
T ss_pred cCCCC-CCceeEEEEECCCC---CCcHHHHHHHHHhCC
Confidence 88775 89999999999999 446678899988764
No 191
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.41 E-value=4.4e-13 Score=129.59 Aligned_cols=104 Identities=24% Similarity=0.307 Sum_probs=87.7
Q ss_pred CcEEEEEEEceeccccccccCCCCCCCCCcEEEEEECC-----EEEEeeeecCCCCCeeceEEEEEEecC---CCEEEEE
Q 002002 586 PIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP-----KWVRTRTILDRFNPRWNEQYTWDVYDP---CTVLTIG 657 (983)
Q Consensus 586 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~-----~~~rT~~~~~t~nP~Wne~~~~~v~~~---~~~l~i~ 657 (983)
..|.|.|.|++|+||+.. +. .+.+||||.+.+.+ ...+|+++.++.||.|||+|.|.+... ...|.|+
T Consensus 12 ~~~~L~V~v~~a~~L~~~---~~-~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~ 87 (134)
T cd00276 12 TAERLTVVVLKARNLPPS---DG-KGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVIT 87 (134)
T ss_pred CCCEEEEEEEEeeCCCCc---cC-CCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEE
Confidence 346899999999999765 45 77899999999854 256999999999999999999998764 4689999
Q ss_pred EEeCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeeec
Q 002002 658 VFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVL 703 (983)
Q Consensus 658 v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 703 (983)
|||.+..+ ++++||.+.+++++ .+...++|++|...
T Consensus 88 v~d~~~~~--------~~~~lG~~~i~l~~--~~~~~~~W~~l~~~ 123 (134)
T cd00276 88 VVDKDSVG--------RNEVIGQVVLGPDS--GGEELEHWNEMLAS 123 (134)
T ss_pred EEecCCCC--------CCceeEEEEECCCC--CCcHHHHHHHHHhC
Confidence 99999876 67899999999999 55556889888754
No 192
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.41 E-value=3.1e-12 Score=121.61 Aligned_cols=96 Identities=27% Similarity=0.358 Sum_probs=79.6
Q ss_pred cEEEEEEEceeccccccccCCCCCCCCCcEEEEEEC-----CEEEEeeeecCCCCCeeceEEEEEEecC----CCEEEEE
Q 002002 587 IGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYG-----PKWVRTRTILDRFNPRWNEQYTWDVYDP----CTVLTIG 657 (983)
Q Consensus 587 ~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~-----~~~~rT~~~~~t~nP~Wne~~~~~v~~~----~~~l~i~ 657 (983)
.+.|+|+|++|++|+.. +. .+.+||||++.+. ....||+++.+++||.|||.|.|..... ...|.|+
T Consensus 14 ~~~L~V~v~~a~~L~~~---~~-~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~ 89 (123)
T cd04035 14 NSALHCTIIRAKGLKAM---DA-NGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLL 89 (123)
T ss_pred CCEEEEEEEEeeCCCCC---CC-CCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEE
Confidence 46899999999999765 55 6889999999973 2478999999999999999999974432 3589999
Q ss_pred EEeCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEE
Q 002002 658 VFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYL 695 (983)
Q Consensus 658 v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~ 695 (983)
|||++..+ +++||.+.++|++|..++...
T Consensus 90 v~d~~~~~---------~~~iG~~~i~l~~l~~~~~~~ 118 (123)
T cd04035 90 VLDEDRFG---------NDFLGETRIPLKKLKPNQTKQ 118 (123)
T ss_pred EEEcCCcC---------CeeEEEEEEEcccCCCCcceE
Confidence 99998753 569999999999998877333
No 193
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.39 E-value=8e-13 Score=127.70 Aligned_cols=104 Identities=17% Similarity=0.227 Sum_probs=84.8
Q ss_pred CcEEEEEEEceeccccccccCCCCCCCCCcEEEEEECC-----EEEEeeeecCCCCCeeceEEEEEEec--CC-CEEEEE
Q 002002 586 PIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP-----KWVRTRTILDRFNPRWNEQYTWDVYD--PC-TVLTIG 657 (983)
Q Consensus 586 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~-----~~~rT~~~~~t~nP~Wne~~~~~v~~--~~-~~l~i~ 657 (983)
..+.|.|+|++|+||++++ .+.+||||.+.+.+ ...||++++++.||.|||.|.|.+.. .. ..|.|+
T Consensus 13 ~~~~L~V~V~~a~nL~~~~-----~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~ 87 (137)
T cd08409 13 TLNRLTVVVLRARGLRQLD-----HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLS 87 (137)
T ss_pred CCCeEEEEEEEecCCCccc-----CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEE
Confidence 3468999999999997763 56799999999743 35699999999999999999999853 23 489999
Q ss_pred EEeCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeee
Q 002002 658 VFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTV 702 (983)
Q Consensus 658 v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 702 (983)
|||.+..+ ++++||++.|.......|...++|+.+..
T Consensus 88 V~~~~~~~--------~~~~lG~v~ig~~~~~~~~~~~hW~~~~~ 124 (137)
T cd08409 88 VMQSGGVR--------KSKLLGRVVLGPFMYARGKELEHWNDMLS 124 (137)
T ss_pred EEeCCCCC--------CcceEEEEEECCcccCCChHHHHHHHHHh
Confidence 99999876 77899999999776666666677876653
No 194
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.38 E-value=1.9e-12 Score=118.59 Aligned_cols=80 Identities=23% Similarity=0.399 Sum_probs=68.1
Q ss_pred EEEEEEEeeCCCCCCCCCCCCeEEEEEECC-----eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeC---
Q 002002 9 LIVEVCNAKNLMPKDGQGTASAYVIVDFDG-----QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYND--- 80 (983)
Q Consensus 9 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~--- 80 (983)
|.|+|.+|+||. |.+||||++.++. .+++|+++++|+||+|||+|.|.+.. ...|.+.|||.
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~-----s~~L~~~v~d~~~~ 70 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG-----SQTLRILCYEKCYS 70 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC-----CCEEEEEEEEcccc
Confidence 689999999995 5699999999953 46899999999999999999999863 57999999986
Q ss_pred ----CCCCCCCCccEEEEEECcc
Q 002002 81 ----KKTGKRSTFLGKVKIAGST 99 (983)
Q Consensus 81 ----~~~~~~d~~lG~~~i~l~~ 99 (983)
+.. ++|+++|++.+.|+.
T Consensus 71 ~~~~d~~-~~d~~~G~g~i~Ld~ 92 (118)
T cd08686 71 KVKLDGE-GTDAIMGKGQIQLDP 92 (118)
T ss_pred ccccccc-CcccEEEEEEEEECH
Confidence 233 389999888888764
No 195
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.38 E-value=1.7e-12 Score=120.70 Aligned_cols=92 Identities=21% Similarity=0.255 Sum_probs=75.3
Q ss_pred EceeccccccccCCCCCCCCCcEEEEEECC------EEEEeeeecCCCCCeeceEEEEEEec-----CCCEEEEEEEeCC
Q 002002 594 IRGATNLLPVKTKDGTRGTTDAYVVAKYGP------KWVRTRTILDRFNPRWNEQYTWDVYD-----PCTVLTIGVFDNG 662 (983)
Q Consensus 594 v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~------~~~rT~~~~~t~nP~Wne~~~~~v~~-----~~~~l~i~v~D~d 662 (983)
.++|++|+.+ |. .|++||||++++.+ ...+|+++++++||.|| +|.|++.+ +...|.|+|||++
T Consensus 6 ~i~a~~L~~~---d~-~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d 80 (110)
T cd04047 6 QFSGKKLDKK---DF-FGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYD 80 (110)
T ss_pred EEEeCCCCCC---CC-CCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeC
Confidence 3689999655 66 78999999998754 25899999999999999 68887643 2569999999999
Q ss_pred CCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEe
Q 002002 663 RYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSL 700 (983)
Q Consensus 663 ~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 700 (983)
..+ +|++||++.+++++|..++ ..++.+
T Consensus 81 ~~~--------~d~~iG~~~~~l~~l~~~~--~~~~~~ 108 (110)
T cd04047 81 SSG--------KHDLIGEFETTLDELLKSS--PLEFEL 108 (110)
T ss_pred CCC--------CCcEEEEEEEEHHHHhcCC--CceEEe
Confidence 987 7889999999999998655 444444
No 196
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.36 E-value=1.9e-12 Score=122.10 Aligned_cols=103 Identities=13% Similarity=0.124 Sum_probs=80.9
Q ss_pred CCcEEEEEEEceeccccccccCCCCCCCCCcEEEEEEC--C---EEEEeeeecCCC-CCeeceEEEEEEecC--CCEEEE
Q 002002 585 SPIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYG--P---KWVRTRTILDRF-NPRWNEQYTWDVYDP--CTVLTI 656 (983)
Q Consensus 585 ~~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~--~---~~~rT~~~~~t~-nP~Wne~~~~~v~~~--~~~l~i 656 (983)
+..|.|.|.|++|+||+++. + .+..||||.+++- + .+.||+++++|+ ||.|||.|.|+|... ...|.|
T Consensus 11 p~~~rLtV~VikarnL~~~~--~--~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v 86 (135)
T cd08692 11 AVNSRIQLQILEAQNLPSSS--T--PLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLI 86 (135)
T ss_pred CcCCeEEEEEEEccCCCccc--C--CCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEE
Confidence 56789999999999998763 3 5667999999873 2 567999999996 699999999999643 237889
Q ss_pred EEEeCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEe
Q 002002 657 GVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSL 700 (983)
Q Consensus 657 ~v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 700 (983)
+|||++..+ ++++||++.+..+.. .+...+||...
T Consensus 87 ~v~d~~~~~--------~n~~IG~v~lG~~~~-~~~~~~hW~~m 121 (135)
T cd08692 87 KLYSRSSVR--------RKHFLGQVWISSDSS-SSEAVEQWKDT 121 (135)
T ss_pred EEEeCCCCc--------CCceEEEEEECCccC-CchhhhhHHHH
Confidence 999999877 677999999998763 22223566543
No 197
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.36 E-value=4.8e-12 Score=122.13 Aligned_cols=104 Identities=15% Similarity=0.199 Sum_probs=84.1
Q ss_pred CCcEEEEEEEceeccccccccCCCCCCCCCcEEEEEECC------EEEEeeeecCCCCCeeceEEEEEEec---CCCEEE
Q 002002 585 SPIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP------KWVRTRTILDRFNPRWNEQYTWDVYD---PCTVLT 655 (983)
Q Consensus 585 ~~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~------~~~rT~~~~~t~nP~Wne~~~~~v~~---~~~~l~ 655 (983)
+..+.|.|+|++|+||+++ +. .|.+||||.+.+.+ .+.||+++++++||+|||+|.|++.. ....|.
T Consensus 12 ~~~~~L~V~VikarnL~~~---~~-~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~ 87 (138)
T cd08408 12 ALTGRLSVEVIKGSNFKNL---AM-NKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLM 87 (138)
T ss_pred CCCCeEEEEEEEecCCCcc---cc-CCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEE
Confidence 4567999999999999776 55 78899999999842 25699999999999999999999863 345899
Q ss_pred EEEEeCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEee
Q 002002 656 IGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLT 701 (983)
Q Consensus 656 i~v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 701 (983)
|+|||.+..+ ++++||.+.+++.....+ ...+|+.+.
T Consensus 88 ~~V~~~~~~~--------~~~~iG~v~l~~~~~~~~-~~~hW~~~l 124 (138)
T cd08408 88 FSVYNKRKMK--------RKEMIGWFSLGLNSSGEE-EEEHWNEMK 124 (138)
T ss_pred EEEEECCCCC--------CCcEEEEEEECCcCCCch-HHHHHHHHH
Confidence 9999999877 788999999988764322 225676554
No 198
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.30 E-value=6.6e-12 Score=161.16 Aligned_cols=118 Identities=21% Similarity=0.326 Sum_probs=100.1
Q ss_pred CcEEEEEEEEeeCCCCCCCCCCCCeEEEEEECCe-EEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCC
Q 002002 6 NRKLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQ-RRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKTG 84 (983)
Q Consensus 6 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~-~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~ 84 (983)
-+.|.|+|++|+||. +..|.+||||++.++++ +++|++++++.||+|||.|+|.+.++.. ...|.|+|||.+.++
T Consensus 1979 ~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~--~~~l~iev~d~d~f~ 2054 (2102)
T PLN03200 1979 PGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPK--GQKLHISCKSKNTFG 2054 (2102)
T ss_pred CcceEEEEeeccccc--cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCC--CCceEEEEEecCccC
Confidence 378999999999998 33689999999999965 8899999999999999999999877631 467999999988773
Q ss_pred CCCCccEEEEEECccceecCCeeeEEEEceecCCcceeeeE---EEEEEEEe
Q 002002 85 KRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQIKGE---IGLKVYYI 133 (983)
Q Consensus 85 ~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~s~~~G~---l~l~i~~~ 133 (983)
++.||.+.|++.++. .+.....||+|.+.+.+ .|. |.+.+.|.
T Consensus 2055 --kd~~G~~~i~l~~vv-~~~~~~~~~~L~~~~~k---~G~~~~~~~e~~w~ 2100 (2102)
T PLN03200 2055 --KSSLGKVTIQIDRVV-MEGTYSGEYSLNPESNK---DGSSRTLEIEFQWS 2100 (2102)
T ss_pred --CCCCceEEEEHHHHh-cCceeeeeeecCccccc---CCCcceEEEEEEec
Confidence 559999999999998 56788899999965433 376 99988885
No 199
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.28 E-value=1.7e-11 Score=114.05 Aligned_cols=89 Identities=17% Similarity=0.269 Sum_probs=73.9
Q ss_pred EEEEEeeCCCCCCCCCCCCeEEEEEECC------eEEeeeCcCCCCCCeeeeEEEEEeeecCC-CCCceEEEEEEeCCCC
Q 002002 11 VEVCNAKNLMPKDGQGTASAYVIVDFDG------QRRRTKTKFRDLNPQWDERLEFLVHDAES-MPTEILEINLYNDKKT 83 (983)
Q Consensus 11 V~v~~a~~L~~~d~~g~~dPyv~v~~~~------~~~~T~~~~~t~nP~WnE~f~f~v~~~~~-l~~~~L~v~V~~~~~~ 83 (983)
+-.++|++|+.+|..|.+||||+|++.+ ..++|+++++++||.|| +|.|.+..... -....|.|+|||.+..
T Consensus 4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~ 82 (110)
T cd04047 4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSS 82 (110)
T ss_pred EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCC
Confidence 4456999999999999999999999854 35899999999999999 68877543211 0146899999998887
Q ss_pred CCCCCccEEEEEECccce
Q 002002 84 GKRSTFLGKVKIAGSTFA 101 (983)
Q Consensus 84 ~~~d~~lG~~~i~l~~l~ 101 (983)
+ +|++||++.++++.+.
T Consensus 83 ~-~d~~iG~~~~~l~~l~ 99 (110)
T cd04047 83 G-KHDLIGEFETTLDELL 99 (110)
T ss_pred C-CCcEEEEEEEEHHHHh
Confidence 6 8999999999999987
No 200
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.26 E-value=2.7e-11 Score=106.67 Aligned_cols=82 Identities=33% Similarity=0.643 Sum_probs=73.3
Q ss_pred EEEEEEEeeCCCCCCCCCCCCeEEEEEECC---eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCCC
Q 002002 9 LIVEVCNAKNLMPKDGQGTASAYVIVDFDG---QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKTGK 85 (983)
Q Consensus 9 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~---~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~~ 85 (983)
|+|+|.+|++|...+..+.+||||++.+.+ ..++|+++.++.+|.|||+|.|.+..+. ...|.|+||+.+..+
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~---~~~l~~~V~~~~~~~- 76 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPD---LDSLSFEVWDKDSFG- 76 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGC---GTEEEEEEEEETSSS-
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeeccc---ccceEEEEEECCCCC-
Confidence 789999999999988888999999999977 6799999999999999999999976654 456999999888775
Q ss_pred CCCccEEEE
Q 002002 86 RSTFLGKVK 94 (983)
Q Consensus 86 ~d~~lG~~~ 94 (983)
++++||++.
T Consensus 77 ~~~~iG~~~ 85 (85)
T PF00168_consen 77 KDELIGEVK 85 (85)
T ss_dssp SEEEEEEEE
T ss_pred CCCEEEEEC
Confidence 699999974
No 201
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=3.6e-12 Score=132.24 Aligned_cols=97 Identities=25% Similarity=0.320 Sum_probs=81.6
Q ss_pred CCCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEECC-----eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEE
Q 002002 4 SCNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFDG-----QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLY 78 (983)
Q Consensus 4 ~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~ 78 (983)
..+.++.++|..|++|.+++.+|..|||+++++.. .+.+|++..+++||.|+|+........+......+.+.|+
T Consensus 90 ~~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~vc 169 (362)
T KOG1013|consen 90 SESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKVVC 169 (362)
T ss_pred hhhhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhhheeec
Confidence 34578999999999999999999999999999853 5688999999999999998877655545555677888898
Q ss_pred eCCCCCCCCCccEEEEEECccce
Q 002002 79 NDKKTGKRSTFLGKVKIAGSTFA 101 (983)
Q Consensus 79 ~~~~~~~~d~~lG~~~i~l~~l~ 101 (983)
+.+.+. .++++|+..+++..+.
T Consensus 170 dn~~~~-~~~sqGq~r~~lkKl~ 191 (362)
T KOG1013|consen 170 DNDKKT-HNESQGQSRVSLKKLK 191 (362)
T ss_pred cCcccc-cccCcccchhhhhccC
Confidence 888876 8899999998887765
No 202
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=5.5e-12 Score=130.90 Aligned_cols=219 Identities=21% Similarity=0.235 Sum_probs=154.3
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCCCCCcEEEEEECC-----eEEEeeeeeeccCCCCCCCCcccceEEE--EecCCC-CCc
Q 002002 428 YLRLTVIQTQDLQPGSGSEPKVRSPELYVKGQLGA-----QLFKTGRTSVGLSPSSSANPTWNEDLVF--VAAEPF-EPF 499 (983)
Q Consensus 428 ~L~V~Viea~~L~~~~~~~d~~~~sdpyv~v~lg~-----~~~rT~~~~~~~~~~~t~nP~wne~f~f--~~~~~~-~~~ 499 (983)
.+..+|..|++|.++ +.++..|||++..++. ..+||++.. +++||.|+|.... ...++. ...
T Consensus 94 ~~~~tl~~a~~lk~~----~~~~~~d~~~~~~llpga~kl~slr~~t~~------n~lN~~w~etev~~~i~~~~~~~K~ 163 (362)
T KOG1013|consen 94 MLDTTLDRAKGLKPM----DINGLADPYVKLHLLPGAGKLNSLRTKTTR------NTLNPEWNETEVYEGITDDDTHLKV 163 (362)
T ss_pred hcceeechhcccchh----hhhhhcchHHhhhcccchhhhhhhhHHhhc------cCcCcceeccceecccccchhhhhh
Confidence 377889999999998 9999999999999953 346777663 6999999998654 333332 457
Q ss_pred EEEEEEeCc---CCceeEEEEEecccccccccCCCCCcceEEeccCCCC------CCcceEEEEEEEEeccccccccccc
Q 002002 500 LVVTVEDVT---NGCSVGHARIQMSTVERRIDDRAEPKSRWFNLVGDET------RPYAGRIHLRACLEGGYHVLDEAAH 570 (983)
Q Consensus 500 L~i~V~D~d---~d~~lG~~~i~L~~l~~~~~~~~~~~~~w~~L~~~~~------~~~~G~l~l~i~l~g~~~v~~~~~~ 570 (983)
+++.|+|.+ ..+++|+..++|..+..++. +....|+.-.-+.+ .+..|++.+.+..+
T Consensus 164 ~Rk~vcdn~~~~~~~sqGq~r~~lkKl~p~q~---k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~----------- 229 (362)
T KOG1013|consen 164 LRKVVCDNDKKTHNESQGQSRVSLKKLKPLQR---KSFNICLEKSLPSERADRDEDEERGAILISLAYS----------- 229 (362)
T ss_pred hheeeccCcccccccCcccchhhhhccChhhc---chhhhhhhccCCcccccccchhhccceeeeeccC-----------
Confidence 888898887 67999999999998875432 23344544222211 23355555543211
Q ss_pred cCCchhHHHHhhccCCcEEEEEEEceeccccccccCCCCCCCCCcEEEEEECC-----EEEEeeeecCCCCCeeceEEEE
Q 002002 571 VTSDVRAAAKQLAKSPIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP-----KWVRTRTILDRFNPRWNEQYTW 645 (983)
Q Consensus 571 ~~~d~~~~~~~l~~~~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~-----~~~rT~~~~~t~nP~Wne~~~~ 645 (983)
....-|.++++++..|..+ |. +|.+|||+..++.. .+.+|.+.++++||++|++|.+
T Consensus 230 --------------s~~~~l~vt~iRc~~l~ss---Ds-ng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~ 291 (362)
T KOG1013|consen 230 --------------STTPGLIVTIIRCSHLASS---DS-NGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFY 291 (362)
T ss_pred --------------cCCCceEEEEEEeeeeecc---cc-CCCCCccceeecCCCcchhhcccCcchhccCCccccccccc
Confidence 1334688999999999888 45 78899999998753 3569999999999999999999
Q ss_pred EEecC---CCEEEEEEEeCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEE
Q 002002 646 DVYDP---CTVLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSY 698 (983)
Q Consensus 646 ~v~~~---~~~l~i~v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~ 698 (983)
.+... ...+.|.|||++..++ .| ++|-+...+. ..+....+|+
T Consensus 292 ~i~pgdLa~~kv~lsvgd~~~G~s-------~d-~~GG~~~g~~--rr~~v~~h~g 337 (362)
T KOG1013|consen 292 DIGPGDLAYKKVALSVGDYDIGKS-------ND-SIGGSMLGGY--RRGEVHKHWG 337 (362)
T ss_pred cCCccchhcceEEEeecccCCCcC-------cc-CCCccccccc--ccchhhcCcc
Confidence 88542 2389999999998652 34 7776654332 3334444554
No 203
>PLN02270 phospholipase D alpha
Probab=99.19 E-value=1.4e-10 Score=136.83 Aligned_cols=128 Identities=15% Similarity=0.142 Sum_probs=105.9
Q ss_pred cEEEEEEEceecccccccc--------------CCCCCCCCCcEEEEEECCE-EEEeeeecCC-CCCeeceEEEEEEecC
Q 002002 587 IGLLEVGIRGATNLLPVKT--------------KDGTRGTTDAYVVAKYGPK-WVRTRTILDR-FNPRWNEQYTWDVYDP 650 (983)
Q Consensus 587 ~g~L~v~v~~a~~L~~~~~--------------~d~~~g~sDpy~~~~~~~~-~~rT~~~~~t-~nP~Wne~~~~~v~~~ 650 (983)
-|.|.++|++|++|+.++- .....++||||+.|.+++. ..||+++.+. .||+|||.|.+++..+
T Consensus 7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~ 86 (808)
T PLN02270 7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHM 86 (808)
T ss_pred ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccC
Confidence 4789999999999975310 0111468899999999884 5699999885 6999999999999999
Q ss_pred CCEEEEEEEeCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeeecCCCCCccceEEEEEEEEEec
Q 002002 651 CTVLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLPGGAKKMGEIEIAVRFTCS 723 (983)
Q Consensus 651 ~~~l~i~v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~f~~~ 723 (983)
.+.|+|.|.|.|.++ . .+||++.||+.+|..|.....||++.....+-.+..-.|+++++|+..
T Consensus 87 ~~~v~f~vkd~~~~g--------~-~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~ 150 (808)
T PLN02270 87 ASNIIFTVKDDNPIG--------A-TLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEV 150 (808)
T ss_pred cceEEEEEecCCccC--------c-eEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEEc
Confidence 999999999999998 3 499999999999999999999999997754433333479999999874
No 204
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.19 E-value=1e-10 Score=102.98 Aligned_cols=81 Identities=31% Similarity=0.545 Sum_probs=70.9
Q ss_pred EEEEEceeccccccccCCCCCCCCCcEEEEEECC---EEEEeeeecCCCCCeeceEEEEEEecC-CCEEEEEEEeCCCCC
Q 002002 590 LEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP---KWVRTRTILDRFNPRWNEQYTWDVYDP-CTVLTIGVFDNGRYK 665 (983)
Q Consensus 590 L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~---~~~rT~~~~~t~nP~Wne~~~~~v~~~-~~~l~i~v~D~d~~~ 665 (983)
|+|+|++|+||+.. +. .+..||||.+.+++ ...+|+++.++.+|.|||+|.|++..+ ...|.|+|||++..+
T Consensus 1 L~v~I~~a~~L~~~---~~-~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~ 76 (85)
T PF00168_consen 1 LTVTIHSARNLPSK---DS-NGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFG 76 (85)
T ss_dssp EEEEEEEEESSSSS---ST-TSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSS
T ss_pred CEEEEEEEECCCCc---cc-CCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCC
Confidence 78999999999654 44 77899999999977 779999999999999999999997544 457999999999987
Q ss_pred CcCCCCCCCCceeEEEE
Q 002002 666 RDEAGKPGKDVRVGKIR 682 (983)
Q Consensus 666 ~~~~~~~~~d~~lG~~~ 682 (983)
+|.+||++.
T Consensus 77 --------~~~~iG~~~ 85 (85)
T PF00168_consen 77 --------KDELIGEVK 85 (85)
T ss_dssp --------SEEEEEEEE
T ss_pred --------CCCEEEEEC
Confidence 688999974
No 205
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=3.6e-11 Score=132.82 Aligned_cols=127 Identities=23% Similarity=0.360 Sum_probs=100.4
Q ss_pred cEEEEEEEceeccccccccCCCCCCCCCcEEEEEECCEEEEeeeecCCCCCeeceEEEEEEecCCCEEEEEEEeCCCCCC
Q 002002 587 IGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILDRFNPRWNEQYTWDVYDPCTVLTIGVFDNGRYKR 666 (983)
Q Consensus 587 ~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~~~~rT~~~~~t~nP~Wne~~~~~v~~~~~~l~i~v~D~d~~~~ 666 (983)
...+.++|+.|+||.+. |. .|+|||||.+.+|..+.||++|...+||+|||.|.|+.......|.+.|||+|..-+
T Consensus 294 sakitltvlcaqgl~ak---dk-tg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechnstdrikvrvwded~dlk 369 (1283)
T KOG1011|consen 294 SAKITLTVLCAQGLIAK---DK-TGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNSTDRIKVRVWDEDNDLK 369 (1283)
T ss_pred ceeeEEeeeecccceec---cc-CCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCCCceeEEEEecCcccHH
Confidence 45788999999999654 66 899999999999999999999999999999999999999988999999999987531
Q ss_pred cCC---CCCCCCceeEEEEEEcccccCCCeEEEEEEeeecCCCCCccceEEEEEEEE
Q 002002 667 DEA---GKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLPGGAKKMGEIEIAVRF 720 (983)
Q Consensus 667 ~~~---~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~f 720 (983)
... =....|+|||+..|.+..|... ..-||.|.....+. ..+|.|++.|..
T Consensus 370 sklrqkl~resddflgqtvievrtlsge--mdvwynlekrtdks-avsgairlhisv 423 (1283)
T KOG1011|consen 370 SKLRQKLTRESDDFLGQTVIEVRTLSGE--MDVWYNLEKRTDKS-AVSGAIRLHISV 423 (1283)
T ss_pred HHHHHHhhhcccccccceeEEEEecccc--hhhhcchhhccchh-hccceEEEEEEE
Confidence 100 0124688999999999998543 37899988653333 235776655544
No 206
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.09 E-value=6e-10 Score=100.85 Aligned_cols=101 Identities=36% Similarity=0.621 Sum_probs=86.1
Q ss_pred EEEEEEEeeCCCCCCCCCCCCeEEEEEECC-eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCCCCC
Q 002002 9 LIVEVCNAKNLMPKDGQGTASAYVIVDFDG-QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKTGKRS 87 (983)
Q Consensus 9 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~~~d 87 (983)
|.|.|++|++|......+.++|||.+.+.+ ..++|+++.++.||.|||.|.|.+... ....|.|.||+..... .+
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~---~~~~l~i~v~~~~~~~-~~ 76 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDP---ESDTLTVEVWDKDRFS-KD 76 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCC---CCCEEEEEEEecCCCC-CC
Confidence 579999999998877777899999999998 899999999999999999999999763 1678999999877764 68
Q ss_pred CccEEEEEECccceecCCeeeEEEEc
Q 002002 88 TFLGKVKIAGSTFAKVGSESSVYYPL 113 (983)
Q Consensus 88 ~~lG~~~i~l~~l~~~~~~~~~w~~L 113 (983)
.++|++.+++..+.........|++|
T Consensus 77 ~~ig~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 77 DFLGEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred ceeEEEEEeHHHhhhcCCcCcceecC
Confidence 99999999999987334556677764
No 207
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=99.04 E-value=4.7e-11 Score=134.07 Aligned_cols=125 Identities=24% Similarity=0.487 Sum_probs=104.3
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEEC--------------------------C-----eEEeeeCcCCCCCCe
Q 002002 5 CNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFD--------------------------G-----QRRRTKTKFRDLNPQ 53 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~--------------------------~-----~~~~T~~~~~t~nP~ 53 (983)
+.+-|.|.+.+|+||.++|.+|.+|||+...+- | -.+-|+++++|+||.
T Consensus 112 P~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnPk 191 (1103)
T KOG1328|consen 112 PSVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNPK 191 (1103)
T ss_pred CcHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCcc
Confidence 445677888899999999999999999988761 1 134588999999999
Q ss_pred eeeEEEEEeeecCCCCCceEEEEEEeCCCC--------------------------------CCC---CCccEEEEEECc
Q 002002 54 WDERLEFLVHDAESMPTEILEINLYNDKKT--------------------------------GKR---STFLGKVKIAGS 98 (983)
Q Consensus 54 WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~--------------------------------~~~---d~~lG~~~i~l~ 98 (983)
|+|.|.|.+.+- ....+.+-+||.|+- ++. |||||.+.||+.
T Consensus 192 W~EkF~F~IeDv---~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~ 268 (1103)
T KOG1328|consen 192 WSEKFQFTIEDV---QTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLA 268 (1103)
T ss_pred hhhheeeehhcc---ccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchh
Confidence 999999999654 478999999986651 223 799999999999
Q ss_pred cceecCCeeeEEEEceecCCcceeeeEEEEEEEEec
Q 002002 99 TFAKVGSESSVYYPLEKRSVFSQIKGEIGLKVYYID 134 (983)
Q Consensus 99 ~l~~~~~~~~~w~~L~~~~~~s~~~G~l~l~i~~~~ 134 (983)
++.. .-.++||.|++++..|+++|.++|++++..
T Consensus 269 EiP~--~Gld~WFkLepRS~~S~VqG~~~LklwLsT 302 (1103)
T KOG1328|consen 269 EIPP--DGLDQWFKLEPRSDKSKVQGQVKLKLWLST 302 (1103)
T ss_pred cCCc--chHHHHhccCcccccccccceEEEEEEEee
Confidence 9864 346899999999999999999999998864
No 208
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.03 E-value=1.2e-09 Score=103.14 Aligned_cols=92 Identities=24% Similarity=0.402 Sum_probs=78.2
Q ss_pred EEEEEEEeeCCCCCC--CCC--CCCeEEEEEECC---eEEeeeCcCCCCC--CeeeeEEEEEeeec--------------
Q 002002 9 LIVEVCNAKNLMPKD--GQG--TASAYVIVDFDG---QRRRTKTKFRDLN--PQWDERLEFLVHDA-------------- 65 (983)
Q Consensus 9 L~V~v~~a~~L~~~d--~~g--~~dPyv~v~~~~---~~~~T~~~~~t~n--P~WnE~f~f~v~~~-------------- 65 (983)
|+|.|.+|++++..+ ..| ++||||++.+.+ .+++|.++++++| |.||++|.|.+..+
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 899999999966543 356 599999999965 6789999999999 99999999987652
Q ss_pred ------CCCCCceEEEEEEeCCCCCCCCCccEEEEEECccce
Q 002002 66 ------ESMPTEILEINLYNDKKTGKRSTFLGKVKIAGSTFA 101 (983)
Q Consensus 66 ------~~l~~~~L~v~V~~~~~~~~~d~~lG~~~i~l~~l~ 101 (983)
+.+....|.++|||.|.++ +|++||++.+++..+.
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~~s-~dd~iG~~~l~l~~l~ 122 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDKFS-PDDFLGSLELDLSILP 122 (133)
T ss_pred cccCcceEecCcEEEEEEEECcccC-CCCcceEEEEEhhhcc
Confidence 2345678999999999886 8999999999999886
No 209
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.03 E-value=1.4e-09 Score=98.40 Aligned_cols=99 Identities=31% Similarity=0.497 Sum_probs=83.6
Q ss_pred EEEEEceeccccccccCCCCCCCCCcEEEEEECC-EEEEeeeecCCCCCeeceEEEEEEec-CCCEEEEEEEeCCCCCCc
Q 002002 590 LEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP-KWVRTRTILDRFNPRWNEQYTWDVYD-PCTVLTIGVFDNGRYKRD 667 (983)
Q Consensus 590 L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~-~~~rT~~~~~t~nP~Wne~~~~~v~~-~~~~l~i~v~D~d~~~~~ 667 (983)
|.|.|++|++|... .. .+..+|||.+.+.+ ...+|+++.++.||.||+.|.|++.. ....|.|+|||.+..+
T Consensus 1 l~v~i~~~~~l~~~---~~-~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~-- 74 (102)
T cd00030 1 LRVTVIEARNLPAK---DL-NGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFS-- 74 (102)
T ss_pred CEEEEEeeeCCCCc---CC-CCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCC--
Confidence 46899999999653 23 56799999999987 88999999999999999999999987 5679999999999876
Q ss_pred CCCCCCCCceeEEEEEEccccc-CCCeEEEEEEe
Q 002002 668 EAGKPGKDVRVGKIRVRLSTLD-TNRVYLNSYSL 700 (983)
Q Consensus 668 ~~~~~~~d~~lG~~~i~l~~l~-~~~~~~~~~~L 700 (983)
.+.+||.+.+++..+. .+.....|++|
T Consensus 75 ------~~~~ig~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 75 ------KDDFLGEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred ------CCceeEEEEEeHHHhhhcCCcCcceecC
Confidence 5779999999999987 55555666654
No 210
>PLN02223 phosphoinositide phospholipase C
Probab=99.00 E-value=2.8e-09 Score=121.14 Aligned_cols=118 Identities=15% Similarity=0.262 Sum_probs=92.0
Q ss_pred cEEEEEEEEeeCCCCC-----CCCCCCCeEEEEEECC-----eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEE
Q 002002 7 RKLIVEVCNAKNLMPK-----DGQGTASAYVIVDFDG-----QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEIN 76 (983)
Q Consensus 7 ~~L~V~v~~a~~L~~~-----d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~ 76 (983)
..|.|+|+.|++++.. +.....||||+|.+.| .+++|++..|+.||.|||+|.|.+..++ -..|.|.
T Consensus 409 ~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PE---LAlLrf~ 485 (537)
T PLN02223 409 KILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPD---LALISFE 485 (537)
T ss_pred eEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccC---ceEEEEE
Confidence 5699999999987521 2234579999999965 4677888888999999999999998874 4578999
Q ss_pred EEeCCCCCCCCCccEEEEEECccceecCCeeeEEEEceecCCcceeeeEEEEEEEE
Q 002002 77 LYNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQIKGEIGLKVYY 132 (983)
Q Consensus 77 V~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~s~~~G~l~l~i~~ 132 (983)
|+|+|... .++|+|++.+|+..+. ...++++|.++.+..-..-.|.+++.|
T Consensus 486 V~D~D~~~-~ddfiGQ~~LPv~~Lr----~GyR~VpL~~~~g~~l~~~~Ll~~f~~ 536 (537)
T PLN02223 486 VYDYEVST-ADAFCGQTCLPVSELI----EGIRAVPLYDERGKACSSTMLLTRFKW 536 (537)
T ss_pred EEecCCCC-CCcEEEEEecchHHhc----CCceeEeccCCCcCCCCCceEEEEEEe
Confidence 99887665 7999999999999987 356788998776554333466666544
No 211
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.00 E-value=2.3e-09 Score=97.26 Aligned_cols=91 Identities=32% Similarity=0.543 Sum_probs=78.6
Q ss_pred EEEEEceeccccccccCCCCCCCCCcEEEEEECCE---EEEeeeecCCCCCeeceEEEEEEecC-CCEEEEEEEeCCCCC
Q 002002 590 LEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPK---WVRTRTILDRFNPRWNEQYTWDVYDP-CTVLTIGVFDNGRYK 665 (983)
Q Consensus 590 L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~~---~~rT~~~~~t~nP~Wne~~~~~v~~~-~~~l~i~v~D~d~~~ 665 (983)
|.+.|+.|++|... +. .+..+|||.+++... ..+|+++.++.||.||++|.|++..+ ...|.|+|||.+..+
T Consensus 2 l~i~i~~~~~l~~~---~~-~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~ 77 (101)
T smart00239 2 LTVKIISARNLPKK---DK-KGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFG 77 (101)
T ss_pred eEEEEEEeeCCCCC---CC-CCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCcc
Confidence 67899999999543 22 357899999999764 79999999999999999999999887 779999999998765
Q ss_pred CcCCCCCCCCceeEEEEEEcccccCCC
Q 002002 666 RDEAGKPGKDVRVGKIRVRLSTLDTNR 692 (983)
Q Consensus 666 ~~~~~~~~~d~~lG~~~i~l~~l~~~~ 692 (983)
.+.+||.+.+++.++..+.
T Consensus 78 --------~~~~~G~~~~~l~~~~~~~ 96 (101)
T smart00239 78 --------RDDFIGQVTIPLSDLLLGG 96 (101)
T ss_pred --------CCceeEEEEEEHHHcccCc
Confidence 5779999999999987665
No 212
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=98.98 E-value=2.7e-09 Score=100.85 Aligned_cols=93 Identities=22% Similarity=0.280 Sum_probs=77.4
Q ss_pred EEEEEceeccccccccCCCCCC--CCCcEEEEEECC---EEEEeeeecCCCC--CeeceEEEEEEecC------------
Q 002002 590 LEVGIRGATNLLPVKTKDGTRG--TTDAYVVAKYGP---KWVRTRTILDRFN--PRWNEQYTWDVYDP------------ 650 (983)
Q Consensus 590 L~v~v~~a~~L~~~~~~d~~~g--~sDpy~~~~~~~---~~~rT~~~~~t~n--P~Wne~~~~~v~~~------------ 650 (983)
|+|.|.+|+|++..+. +. .| .+||||.+.+.+ ...+|.+.++++| |.||+.|.|++.-+
T Consensus 2 LRViIw~~~~v~~~~~-~~-~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~ 79 (133)
T cd08374 2 LRVIVWNTRDVLNDDT-NI-TGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKE 79 (133)
T ss_pred EEEEEEECcCCccccc-cc-CCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeec
Confidence 7899999999765443 22 45 499999999854 6789999999999 99999999987541
Q ss_pred ------------CCEEEEEEEeCCCCCCcCCCCCCCCceeEEEEEEcccccCCC
Q 002002 651 ------------CTVLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNR 692 (983)
Q Consensus 651 ------------~~~l~i~v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~ 692 (983)
...|+|+|||+|.++ +|++||.+.++|..+..+.
T Consensus 80 ~~~~~~~~e~~~~~~L~lqvwD~D~~s--------~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 80 HFWSLDETEYKIPPKLTLQVWDNDKFS--------PDDFLGSLELDLSILPRPA 125 (133)
T ss_pred cccccCcceEecCcEEEEEEEECcccC--------CCCcceEEEEEhhhccccc
Confidence 247999999999988 7889999999999987654
No 213
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=98.98 E-value=2.9e-09 Score=96.53 Aligned_cols=90 Identities=39% Similarity=0.671 Sum_probs=79.0
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCeEEEEEECCe---EEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCC
Q 002002 8 KLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQ---RRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKTG 84 (983)
Q Consensus 8 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~---~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~ 84 (983)
.|.|.|++|++|......+..+|||++++.+. ..+|+++.++.||.|||+|.|.+..+. ...|.|+||+.+..+
T Consensus 1 ~l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~---~~~l~i~v~~~~~~~ 77 (101)
T smart00239 1 TLTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPE---LAELEIEVYDKDRFG 77 (101)
T ss_pred CeEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcc---cCEEEEEEEecCCcc
Confidence 37899999999998876678999999999874 899999999999999999999997753 689999999877664
Q ss_pred CCCCccEEEEEECccce
Q 002002 85 KRSTFLGKVKIAGSTFA 101 (983)
Q Consensus 85 ~~d~~lG~~~i~l~~l~ 101 (983)
.+.++|.+.+++.++.
T Consensus 78 -~~~~~G~~~~~l~~~~ 93 (101)
T smart00239 78 -RDDFIGQVTIPLSDLL 93 (101)
T ss_pred -CCceeEEEEEEHHHcc
Confidence 6899999999998876
No 214
>PLN02223 phosphoinositide phospholipase C
Probab=98.97 E-value=6e-09 Score=118.53 Aligned_cols=106 Identities=20% Similarity=0.265 Sum_probs=85.5
Q ss_pred cEEEEEEEceecccccc--ccCCCCCCCCCcEEEEEECC-----EEEEeeeecCCCCCeeceEEEEEEecCCC-EEEEEE
Q 002002 587 IGLLEVGIRGATNLLPV--KTKDGTRGTTDAYVVAKYGP-----KWVRTRTILDRFNPRWNEQYTWDVYDPCT-VLTIGV 658 (983)
Q Consensus 587 ~g~L~v~v~~a~~L~~~--~~~d~~~g~sDpy~~~~~~~-----~~~rT~~~~~t~nP~Wne~~~~~v~~~~~-~l~i~v 658 (983)
...|.|+|+.|++++.- ++.+. ....||||.|.+.+ ...+|.+..++.||.|||+|+|++..|.- .|+|+|
T Consensus 408 ~~~L~V~Visgq~~~~~~~k~~~~-~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V 486 (537)
T PLN02223 408 VKILKVKIYMGDGWIVDFKKRIGR-LSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEV 486 (537)
T ss_pred ceEEEEEEEEcccccCCcccccCC-CCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEE
Confidence 46899999999998521 11122 45679999999854 45688877788999999999999988775 799999
Q ss_pred EeCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeeecC
Q 002002 659 FDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLL 704 (983)
Q Consensus 659 ~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~ 704 (983)
+|+|..+ .|+|+|+..+|++.|..|- +..||.+..
T Consensus 487 ~D~D~~~--------~ddfiGQ~~LPv~~Lr~Gy---R~VpL~~~~ 521 (537)
T PLN02223 487 YDYEVST--------ADAFCGQTCLPVSELIEGI---RAVPLYDER 521 (537)
T ss_pred EecCCCC--------CCcEEEEEecchHHhcCCc---eeEeccCCC
Confidence 9999876 6789999999999999996 567887653
No 215
>PLN02952 phosphoinositide phospholipase C
Probab=98.90 E-value=1.3e-08 Score=118.49 Aligned_cols=120 Identities=23% Similarity=0.260 Sum_probs=92.6
Q ss_pred cEEEEEEEceecccccccc---CCCCCCCCCcEEEEEECC-----EEEEeeeecCCCCCeeceEEEEEEecCC-CEEEEE
Q 002002 587 IGLLEVGIRGATNLLPVKT---KDGTRGTTDAYVVAKYGP-----KWVRTRTILDRFNPRWNEQYTWDVYDPC-TVLTIG 657 (983)
Q Consensus 587 ~g~L~v~v~~a~~L~~~~~---~d~~~g~sDpy~~~~~~~-----~~~rT~~~~~t~nP~Wne~~~~~v~~~~-~~l~i~ 657 (983)
...|.|+|+.|++|+.-.. .+. ....||||.+.+-+ ...+|+++.++.||.|||+|.|++..|. ..|.|.
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~-~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~ 547 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDS-YSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIE 547 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCc-cCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEE
Confidence 4679999999999853211 122 23459999998743 5679999999999999999999998775 479999
Q ss_pred EEeCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeeecCCCCCccceEEEEEEEEE
Q 002002 658 VFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLPGGAKKMGEIEIAVRFT 721 (983)
Q Consensus 658 v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~f~ 721 (983)
|||+|..+ .|+++|+..+|++.|..|. +++||.+. .| ...+.+.|-++|.
T Consensus 548 V~D~D~~~--------~ddfiGq~~lPv~~Lr~Gy---R~VpL~~~--~G-~~l~~a~Llv~f~ 597 (599)
T PLN02952 548 VREYDMSE--------KDDFGGQTCLPVSELRPGI---RSVPLHDK--KG-EKLKNVRLLMRFI 597 (599)
T ss_pred EEecCCCC--------CCCeEEEEEcchhHhcCCc---eeEeCcCC--CC-CCCCCEEEEEEEE
Confidence 99999876 6789999999999999997 57888754 33 2235566666664
No 216
>PLN02270 phospholipase D alpha
Probab=98.90 E-value=9.7e-09 Score=121.48 Aligned_cols=123 Identities=17% Similarity=0.311 Sum_probs=101.6
Q ss_pred cEEEEEEEEeeCCCCCC------------------CCCCCCeEEEEEECC-eEEeeeCcCCC-CCCeeeeEEEEEeeecC
Q 002002 7 RKLIVEVCNAKNLMPKD------------------GQGTASAYVIVDFDG-QRRRTKTKFRD-LNPQWDERLEFLVHDAE 66 (983)
Q Consensus 7 ~~L~V~v~~a~~L~~~d------------------~~g~~dPyv~v~~~~-~~~~T~~~~~t-~nP~WnE~f~f~v~~~~ 66 (983)
+.|.|+|.+|++|+..+ ..+++||||+|.+++ ...||+++.+. .||.|||+|.+.+...
T Consensus 8 g~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~- 86 (808)
T PLN02270 8 GTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHM- 86 (808)
T ss_pred cceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccC-
Confidence 67899999999998521 235789999999988 67899999885 6999999999999876
Q ss_pred CCCCceEEEEEEeCCCCCCCCCccEEEEEECccceecCCeeeEEEEceecCCcceee-eEEEEEEEEecCC
Q 002002 67 SMPTEILEINLYNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQIK-GEIGLKVYYIDED 136 (983)
Q Consensus 67 ~l~~~~L~v~V~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~s~~~-G~l~l~i~~~~~~ 136 (983)
...+.|.|-|++-+ ...+||.+.+|..++. .++..+.||++....++.... -.|++++.|.+..
T Consensus 87 ---~~~v~f~vkd~~~~--g~~~ig~~~~p~~~~~-~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~ 151 (808)
T PLN02270 87 ---ASNIIFTVKDDNPI--GATLIGRAYIPVEEIL-DGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEVT 151 (808)
T ss_pred ---cceEEEEEecCCcc--CceEEEEEEEEHHHhc-CCCccccEEeccCCCCCcCCCCCEEEEEEEEEEcc
Confidence 68899999765555 4679999999999998 677899999998877654322 3899999998743
No 217
>PLN02952 phosphoinositide phospholipase C
Probab=98.87 E-value=1.6e-08 Score=117.66 Aligned_cols=119 Identities=17% Similarity=0.253 Sum_probs=91.1
Q ss_pred CcEEEEEEEEeeCCCCC------CCCCCCCeEEEEEECC-----eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEE
Q 002002 6 NRKLIVEVCNAKNLMPK------DGQGTASAYVIVDFDG-----QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILE 74 (983)
Q Consensus 6 ~~~L~V~v~~a~~L~~~------d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~ 74 (983)
...|.|+|+.|++|+.. +.....||||+|.+-| .+++|+++.++.||.|||+|.|.+..++ -..|.
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PE---LAllr 545 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPE---LALLR 545 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCC---ccEEE
Confidence 36799999999987531 1112359999999854 6789999999999999999999998764 35789
Q ss_pred EEEEeCCCCCCCCCccEEEEEECccceecCCeeeEEEEceecCCcceeeeEEEEEEEE
Q 002002 75 INLYNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQIKGEIGLKVYY 132 (983)
Q Consensus 75 v~V~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~s~~~G~l~l~i~~ 132 (983)
|.|||++..+ .++|+|++.+|+..+. ...+|++|.+..+.....-.|.+++.+
T Consensus 546 f~V~D~D~~~-~ddfiGq~~lPv~~Lr----~GyR~VpL~~~~G~~l~~a~Llv~f~~ 598 (599)
T PLN02952 546 IEVREYDMSE-KDDFGGQTCLPVSELR----PGIRSVPLHDKKGEKLKNVRLLMRFIF 598 (599)
T ss_pred EEEEecCCCC-CCCeEEEEEcchhHhc----CCceeEeCcCCCCCCCCCEEEEEEEEe
Confidence 9999887765 7999999999999987 345699998766544333455555543
No 218
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.81 E-value=1.8e-08 Score=116.51 Aligned_cols=118 Identities=20% Similarity=0.390 Sum_probs=96.8
Q ss_pred EEEEEEEEeeCCCCCCCC----CCCCeEEEEEECC-----eEEeee-CcCCCCCCeeeeEEEEEeeecCCCCCceEEEEE
Q 002002 8 KLIVEVCNAKNLMPKDGQ----GTASAYVIVDFDG-----QRRRTK-TKFRDLNPQWDERLEFLVHDAESMPTEILEINL 77 (983)
Q Consensus 8 ~L~V~v~~a~~L~~~d~~----g~~dPyv~v~~~~-----~~~~T~-~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V 77 (983)
.|.|.|+.++++.+.... ..+||||.|++-| .+.+|+ +..|+-||.|+|+|+|.+..|+ -..|.|.|
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPE---LAliRF~V 693 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPE---LALIRFEV 693 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccc---eeEEEEEE
Confidence 599999999977765432 3579999999855 578899 5667899999999999999885 46789999
Q ss_pred EeCCCCCCCCCccEEEEEECccceecCCeeeEEEEceecCCcceeeeEEEEEEEEe
Q 002002 78 YNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQIKGEIGLKVYYI 133 (983)
Q Consensus 78 ~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~s~~~G~l~l~i~~~ 133 (983)
+|++..+ +|+|+|++.+|+..|. .+.+.++|.++.+.....-.|.+++.+.
T Consensus 694 ~d~d~~~-~ddF~GQ~tlP~~~L~----~GyRhVpL~~~~G~~~~~asLfv~i~~~ 744 (746)
T KOG0169|consen 694 HDYDYIG-KDDFIGQTTLPVSELR----QGYRHVPLLSREGEALSSASLFVRIAIV 744 (746)
T ss_pred EecCCCC-cccccceeeccHHHhh----CceeeeeecCCCCccccceeEEEEEEEe
Confidence 9887775 8999999999999987 4667788988877666667888888765
No 219
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.79 E-value=1.7e-08 Score=110.91 Aligned_cols=122 Identities=28% Similarity=0.432 Sum_probs=104.2
Q ss_pred cEEEEEEEEeeCCCCCCCC-CCCCeEEEEEECCeEEeeeCcCCCCCCeee-eEEEEEeeecCCCCCceEEEEEEeCCCCC
Q 002002 7 RKLIVEVCNAKNLMPKDGQ-GTASAYVIVDFDGQRRRTKTKFRDLNPQWD-ERLEFLVHDAESMPTEILEINLYNDKKTG 84 (983)
Q Consensus 7 ~~L~V~v~~a~~L~~~d~~-g~~dPyv~v~~~~~~~~T~~~~~t~nP~Wn-E~f~f~v~~~~~l~~~~L~v~V~~~~~~~ 84 (983)
++|.|.|+.|++|+-+|.. ...|.||.+++.+..++|.+..+++||+|| +.|.|.+.+ .+++++.|.+.+.|+|..+
T Consensus 3 gkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevdd-adlqdeplqi~lld~dtys 81 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDD-ADLQDEPLQIRLLDHDTYS 81 (1169)
T ss_pred CcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecCh-hhhccCCeeEEEecccccc
Confidence 6899999999999999874 357999999999999999999999999999 789999977 4688999999999988886
Q ss_pred CCCCccEEEEEECcccee---------cCCeeeEEEEceecCCcceeeeEEEEEEEE
Q 002002 85 KRSTFLGKVKIAGSTFAK---------VGSESSVYYPLEKRSVFSQIKGEIGLKVYY 132 (983)
Q Consensus 85 ~~d~~lG~~~i~l~~l~~---------~~~~~~~w~~L~~~~~~s~~~G~l~l~i~~ 132 (983)
.+|-||++.|+++.+.- ++.....||++.+.-+ .++|||.+-+..
T Consensus 82 -andaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtih--girgeinvivkv 135 (1169)
T KOG1031|consen 82 -ANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIH--GIRGEINVIVKV 135 (1169)
T ss_pred -cccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecc--cccceeEEEEEE
Confidence 89999999999998751 3455678999987644 378998876654
No 220
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.78 E-value=3.1e-08 Score=115.09 Aligned_cols=119 Identities=18% Similarity=0.321 Sum_probs=92.4
Q ss_pred CcEEEEEEEEeeCCCCC------CCCCCCCeEEEEEECC-----eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEE
Q 002002 6 NRKLIVEVCNAKNLMPK------DGQGTASAYVIVDFDG-----QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILE 74 (983)
Q Consensus 6 ~~~L~V~v~~a~~L~~~------d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~ 74 (983)
...|.|+|+.+.+++.. +.....||||+|.+-| .+++|++..++.||.|||+|.|.+.-++ -..|.
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPE---LAllR 544 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPE---LALLR 544 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCc---eeEEE
Confidence 36799999999987521 1223469999999944 5678999999999999999999998774 46789
Q ss_pred EEEEeCCCCCCCCCccEEEEEECccceecCCeeeEEEEceecCCcceeeeEEEEEEEE
Q 002002 75 INLYNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQIKGEIGLKVYY 132 (983)
Q Consensus 75 v~V~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~s~~~G~l~l~i~~ 132 (983)
|.|+|++... +|+|+|+..+|+..|. ...+.++|.++.+..-..-.|.+++.+
T Consensus 545 f~V~d~d~~~-~ddfiGQ~~lPv~~Lr----~GyR~V~L~~~~G~~l~~~~Ll~~f~~ 597 (598)
T PLN02230 545 VEVHEHDINE-KDDFGGQTCLPVSEIR----QGIHAVPLFNRKGVKYSSTRLLMRFEF 597 (598)
T ss_pred EEEEECCCCC-CCCEEEEEEcchHHhh----CccceEeccCCCcCCCCCCeeEEEEEe
Confidence 9999877665 8999999999999987 456678888776554333466666654
No 221
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.76 E-value=5e-08 Score=113.43 Aligned_cols=121 Identities=17% Similarity=0.198 Sum_probs=90.7
Q ss_pred cEEEEEEEceeccccccccC---CCCCCCCCcEEEEEECC-----EEEEeeeecCCCCCeeceEEEEEEecCC-CEEEEE
Q 002002 587 IGLLEVGIRGATNLLPVKTK---DGTRGTTDAYVVAKYGP-----KWVRTRTILDRFNPRWNEQYTWDVYDPC-TVLTIG 657 (983)
Q Consensus 587 ~g~L~v~v~~a~~L~~~~~~---d~~~g~sDpy~~~~~~~-----~~~rT~~~~~t~nP~Wne~~~~~v~~~~-~~l~i~ 657 (983)
...|.|+|+.+.+++....+ +. ....||||.|.+-+ ...+|++..++.||.|||+|.|++.-|. ..|+|+
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~-~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~ 546 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDS-YSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVE 546 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCC-CCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEE
Confidence 45799999999997532211 22 33569999999733 3568999999999999999999998876 489999
Q ss_pred EEeCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeeecCCCCCccceEEEEEEEE
Q 002002 658 VFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLPGGAKKMGEIEIAVRF 720 (983)
Q Consensus 658 v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~f 720 (983)
|+|+|..+ +|+|||+..||++.|..|- +..+|.+....... .-.|-+.+.|
T Consensus 547 V~d~d~~~--------~ddfiGQ~~lPv~~Lr~Gy---R~V~L~~~~G~~l~-~~~Ll~~f~~ 597 (598)
T PLN02230 547 VHEHDINE--------KDDFGGQTCLPVSEIRQGI---HAVPLFNRKGVKYS-STRLLMRFEF 597 (598)
T ss_pred EEECCCCC--------CCCEEEEEEcchHHhhCcc---ceEeccCCCcCCCC-CCeeEEEEEe
Confidence 99999876 6889999999999999986 45678765322222 2345555444
No 222
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.75 E-value=8.9e-08 Score=111.26 Aligned_cols=121 Identities=19% Similarity=0.211 Sum_probs=90.1
Q ss_pred cEEEEEEEceeccccc--cc-cCCCCCCCCCcEEEEEECC-----EEEEeeeecCCCCCeeceEEEEEEecCC-CEEEEE
Q 002002 587 IGLLEVGIRGATNLLP--VK-TKDGTRGTTDAYVVAKYGP-----KWVRTRTILDRFNPRWNEQYTWDVYDPC-TVLTIG 657 (983)
Q Consensus 587 ~g~L~v~v~~a~~L~~--~~-~~d~~~g~sDpy~~~~~~~-----~~~rT~~~~~t~nP~Wne~~~~~v~~~~-~~l~i~ 657 (983)
...|.|+|+.|.+++- .+ ..+. ....||||.|.+.+ ...||+++.++.||.|||+|+|.+..|. ..|+|.
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~-~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~ 529 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQ-YSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLE 529 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCC-CCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEE
Confidence 4679999999998531 11 1122 34579999999743 4679999999999999999999998776 489999
Q ss_pred EEeCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeeecCCCCCccceEEEEEEEE
Q 002002 658 VFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLPGGAKKMGEIEIAVRF 720 (983)
Q Consensus 658 v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~f 720 (983)
|+|+|..+ .|+|||+..+|++.|..|- +..||.+....... .-+|-+.+.|
T Consensus 530 V~d~D~~~--------~ddfigq~~lPv~~Lr~Gy---R~V~L~~~~g~~l~-~a~Lfv~~~~ 580 (581)
T PLN02222 530 VHEYDMSE--------KDDFGGQTCLPVWELSQGI---RAFPLHSRKGEKYK-SVKLLVKVEF 580 (581)
T ss_pred EEECCCCC--------CCcEEEEEEcchhhhhCcc---ceEEccCCCcCCCC-CeeEEEEEEe
Confidence 99999866 6789999999999999986 45678765322222 2345555443
No 223
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.75 E-value=2.5e-08 Score=109.60 Aligned_cols=120 Identities=27% Similarity=0.447 Sum_probs=99.1
Q ss_pred cEEEEEEEceeccccccccCCCCCCCCCcEEEEEECCEEEEeeeecCCCCCeece-EEEEEEecC---CCEEEEEEEeCC
Q 002002 587 IGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILDRFNPRWNE-QYTWDVYDP---CTVLTIGVFDNG 662 (983)
Q Consensus 587 ~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~~~~rT~~~~~t~nP~Wne-~~~~~v~~~---~~~l~i~v~D~d 662 (983)
.|.|.|+|..|++||.||+. ...+|.||.+++++..++|.+..+++||.||. =|.|+|.|. ..+|.|.+.|+|
T Consensus 2 pgkl~vki~a~r~lpvmdka---sd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~d 78 (1169)
T KOG1031|consen 2 PGKLGVKIKAARHLPVMDKA---SDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHD 78 (1169)
T ss_pred CCcceeEEEeccCCcccccc---cccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEeccc
Confidence 37889999999999999632 56789999999999999999999999999996 588888764 458999999999
Q ss_pred CCCCcCCCCCCCCceeEEEEEEccccc----------CCCeEEEEEEeeecCCCCCccceEEEEEEEE
Q 002002 663 RYKRDEAGKPGKDVRVGKIRVRLSTLD----------TNRVYLNSYSLTVLLPGGAKKMGEIEIAVRF 720 (983)
Q Consensus 663 ~~~~~~~~~~~~d~~lG~~~i~l~~l~----------~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~f 720 (983)
..+ .++-||++.|++..|. .|.+...|+|.-+. ..|. +|+|.+-++.
T Consensus 79 tys--------andaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdt-ihgi--rgeinvivkv 135 (1169)
T KOG1031|consen 79 TYS--------ANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDT-IHGI--RGEINVIVKV 135 (1169)
T ss_pred ccc--------cccccceeeeccChHHHHhHHhhhcCCceEEeeeeeccee-cccc--cceeEEEEEE
Confidence 998 4558999999998874 24678899998765 3553 4888866554
No 224
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.75 E-value=4.3e-08 Score=113.49 Aligned_cols=121 Identities=18% Similarity=0.250 Sum_probs=92.3
Q ss_pred EEEEEEceeccccccccCCCCCCCCCcEEEEEECC-----EEEEeeeec-CCCCCeeceEEEEEEecCCC-EEEEEEEeC
Q 002002 589 LLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP-----KWVRTRTIL-DRFNPRWNEQYTWDVYDPCT-VLTIGVFDN 661 (983)
Q Consensus 589 ~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~-----~~~rT~~~~-~t~nP~Wne~~~~~v~~~~~-~l~i~v~D~ 661 (983)
+|.|+|++++|+++...+......+||||.+++.+ ...+|+++. ++.||.|+|+|+|++..|.- -|+|.|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 89999999998876432222135689999999855 466999555 56699999999999998874 899999999
Q ss_pred CCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeeecCCCCCccceEEEEEEEEE
Q 002002 662 GRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLPGGAKKMGEIEIAVRFT 721 (983)
Q Consensus 662 d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~f~ 721 (983)
|..+ +|+|+|+..+|+++|..|- +-.||....... -...+|-+.+.+.
T Consensus 697 d~~~--------~ddF~GQ~tlP~~~L~~Gy---RhVpL~~~~G~~-~~~asLfv~i~~~ 744 (746)
T KOG0169|consen 697 DYIG--------KDDFIGQTTLPVSELRQGY---RHVPLLSREGEA-LSSASLFVRIAIV 744 (746)
T ss_pred CCCC--------cccccceeeccHHHhhCce---eeeeecCCCCcc-ccceeEEEEEEEe
Confidence 9988 7889999999999999986 346787653222 1235566665553
No 225
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.73 E-value=7.8e-08 Score=111.71 Aligned_cols=119 Identities=20% Similarity=0.281 Sum_probs=91.7
Q ss_pred CcEEEEEEEEeeCCC---CC---CCCCCCCeEEEEEECC-----eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEE
Q 002002 6 NRKLIVEVCNAKNLM---PK---DGQGTASAYVIVDFDG-----QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILE 74 (983)
Q Consensus 6 ~~~L~V~v~~a~~L~---~~---d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~ 74 (983)
...|.|+|+.+.++. ++ +.....||||+|.+.| .+++|+++.++.||.|||+|.|.+..++ -..|.
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~Pe---LAllR 527 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPE---LALLR 527 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCc---eeEEE
Confidence 357999999998753 11 1223579999999954 5789999999999999999999998774 46789
Q ss_pred EEEEeCCCCCCCCCccEEEEEECccceecCCeeeEEEEceecCCcceeeeEEEEEEEE
Q 002002 75 INLYNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQIKGEIGLKVYY 132 (983)
Q Consensus 75 v~V~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~s~~~G~l~l~i~~ 132 (983)
|.|+|+|... .++|+|+..+|+..+. .+.+.++|.+..+..-..-.|.+++.+
T Consensus 528 f~V~d~D~~~-~ddfigq~~lPv~~Lr----~GyR~V~L~~~~g~~l~~a~Lfv~~~~ 580 (581)
T PLN02222 528 LEVHEYDMSE-KDDFGGQTCLPVWELS----QGIRAFPLHSRKGEKYKSVKLLVKVEF 580 (581)
T ss_pred EEEEECCCCC-CCcEEEEEEcchhhhh----CccceEEccCCCcCCCCCeeEEEEEEe
Confidence 9999877665 7999999999999987 456778888776554333466666644
No 226
>PLN02228 Phosphoinositide phospholipase C
Probab=98.73 E-value=8.5e-08 Score=111.11 Aligned_cols=120 Identities=13% Similarity=0.170 Sum_probs=95.1
Q ss_pred cEEEEEEEEeeCCC---CCC---CCCCCCeEEEEEECC-----eEEeeeCcCCCCCCee-eeEEEEEeeecCCCCCceEE
Q 002002 7 RKLIVEVCNAKNLM---PKD---GQGTASAYVIVDFDG-----QRRRTKTKFRDLNPQW-DERLEFLVHDAESMPTEILE 74 (983)
Q Consensus 7 ~~L~V~v~~a~~L~---~~d---~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~W-nE~f~f~v~~~~~l~~~~L~ 74 (983)
..|.|+|++|++|+ +.+ .....||||+|.+.| .+++|+++.++.||.| ||+|.|.+..++ -..|.
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pE---LA~lR 507 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPE---LALLW 507 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCc---eeEEE
Confidence 46999999999873 122 123479999999854 5679999999999999 999999998774 45789
Q ss_pred EEEEeCCCCCCCCCccEEEEEECccceecCCeeeEEEEceecCCcceeeeEEEEEEEEec
Q 002002 75 INLYNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQIKGEIGLKVYYID 134 (983)
Q Consensus 75 v~V~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~s~~~G~l~l~i~~~~ 134 (983)
|.|+|++..+ .++|+|++.+|+..|. .+.+.++|.+..+..-....|.+++.+.+
T Consensus 508 f~V~D~d~~~-~d~figq~~lPv~~Lr----~GYR~VpL~~~~G~~l~~atLfv~~~~~~ 562 (567)
T PLN02228 508 FKVQDYDNDT-QNDFAGQTCLPLPELK----SGVRAVRLHDRAGKAYKNTRLLVSFALDP 562 (567)
T ss_pred EEEEeCCCCC-CCCEEEEEEcchhHhh----CCeeEEEccCCCCCCCCCeEEEEEEEEcC
Confidence 9999877665 8999999999999986 45678889877665545578888887653
No 227
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.71 E-value=4.4e-08 Score=86.47 Aligned_cols=86 Identities=27% Similarity=0.388 Sum_probs=69.2
Q ss_pred EEEEEceeccccccccCCCCCCCCCcEEEEEECCE-EEEeeeecCCCCCeeceEEEEEEecCCCEEEEEEEeCCCCCCcC
Q 002002 590 LEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPK-WVRTRTILDRFNPRWNEQYTWDVYDPCTVLTIGVFDNGRYKRDE 668 (983)
Q Consensus 590 L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~~-~~rT~~~~~t~nP~Wne~~~~~v~~~~~~l~i~v~D~d~~~~~~ 668 (983)
|.|+|..|+++.-...... .++.|||+++++++. ..||++ +.||.|||.|.|+| +....+.|.|||....
T Consensus 1 L~I~V~~~RdvdH~~~~~~-~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~V-dk~nEiel~VyDk~~~---- 71 (109)
T cd08689 1 LTITITSARDVDHIASPRF-SKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPV-EKNNEEEVIVYDKGGD---- 71 (109)
T ss_pred CEEEEEEEecCccccchhh-ccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEe-cCCcEEEEEEEeCCCC----
Confidence 5789999999943321113 778899999999985 899998 48999999999999 6688999999998653
Q ss_pred CCCCCCCceeEEEEEEccccc
Q 002002 669 AGKPGKDVRVGKIRVRLSTLD 689 (983)
Q Consensus 669 ~~~~~~d~~lG~~~i~l~~l~ 689 (983)
..-.||-.=+++++|.
T Consensus 72 -----~~~Pi~llW~~~sdi~ 87 (109)
T cd08689 72 -----QPVPVGLLWLRLSDIA 87 (109)
T ss_pred -----eecceeeehhhHHHHH
Confidence 3557898888888875
No 228
>PLN02228 Phosphoinositide phospholipase C
Probab=98.68 E-value=1.7e-07 Score=108.72 Aligned_cols=122 Identities=18% Similarity=0.193 Sum_probs=91.9
Q ss_pred cEEEEEEEceeccccc---cccCCCCCCCCCcEEEEEECC-----EEEEeeeecCCCCCee-ceEEEEEEecCC-CEEEE
Q 002002 587 IGLLEVGIRGATNLLP---VKTKDGTRGTTDAYVVAKYGP-----KWVRTRTILDRFNPRW-NEQYTWDVYDPC-TVLTI 656 (983)
Q Consensus 587 ~g~L~v~v~~a~~L~~---~~~~d~~~g~sDpy~~~~~~~-----~~~rT~~~~~t~nP~W-ne~~~~~v~~~~-~~l~i 656 (983)
...|.|+|++|++|+. ....+. ....||||.+.+.+ ...||+++.++.||.| ||+|.|.+..|. ..|+|
T Consensus 430 ~~~L~I~ViSGq~l~lp~~~~~~~~-~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf 508 (567)
T PLN02228 430 KTTLKVKIYTGEGWDLDFHLTHFDQ-YSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWF 508 (567)
T ss_pred CceEEEEEEECCccCCCCCCCCCCC-CCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEE
Confidence 4579999999999732 111122 33479999999743 4579999999999999 999999998776 48999
Q ss_pred EEEeCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeeecCCCCCccceEEEEEEEEE
Q 002002 657 GVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLPGGAKKMGEIEIAVRFT 721 (983)
Q Consensus 657 ~v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~f~ 721 (983)
.|+|+|..+ .|++||+..||++.|..|- +..+|.+...... ...+|-+.+.+.
T Consensus 509 ~V~D~d~~~--------~d~figq~~lPv~~Lr~GY---R~VpL~~~~G~~l-~~atLfv~~~~~ 561 (567)
T PLN02228 509 KVQDYDNDT--------QNDFAGQTCLPLPELKSGV---RAVRLHDRAGKAY-KNTRLLVSFALD 561 (567)
T ss_pred EEEeCCCCC--------CCCEEEEEEcchhHhhCCe---eEEEccCCCCCCC-CCeEEEEEEEEc
Confidence 999999776 6789999999999999886 4568876533222 235577766653
No 229
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.65 E-value=9.7e-08 Score=84.36 Aligned_cols=83 Identities=22% Similarity=0.350 Sum_probs=69.0
Q ss_pred EEEEEEEeeCCCCCC---CCCCCCeEEEEEECC-eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCC
Q 002002 9 LIVEVCNAKNLMPKD---GQGTASAYVIVDFDG-QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKTG 84 (983)
Q Consensus 9 L~V~v~~a~~L~~~d---~~g~~dPyv~v~~~~-~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~ 84 (983)
|.|+|.+|+|+.-.+ ..+.++|||.+++++ ++.||++ +.||.|||+|.|.+.. ...+++.|||...-
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vdk-----~nEiel~VyDk~~~- 71 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVEK-----NNEEEVIVYDKGGD- 71 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEecC-----CcEEEEEEEeCCCC-
Confidence 679999999998877 467899999999988 5899988 4799999999999943 68999999964322
Q ss_pred CCCCccEEEEEECccce
Q 002002 85 KRSTFLGKVKIAGSTFA 101 (983)
Q Consensus 85 ~~d~~lG~~~i~l~~l~ 101 (983)
..--+|...+.++++.
T Consensus 72 -~~~Pi~llW~~~sdi~ 87 (109)
T cd08689 72 -QPVPVGLLWLRLSDIA 87 (109)
T ss_pred -eecceeeehhhHHHHH
Confidence 4567888888888876
No 230
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.47 E-value=4.8e-07 Score=103.65 Aligned_cols=118 Identities=20% Similarity=0.275 Sum_probs=89.3
Q ss_pred cEEEEEEEEeeCCCCCCCCCCCCeEEEEEECC------eEEeeeCcCCCCCCeee-eEEEEEeeecCCCCCceEEEEEEe
Q 002002 7 RKLIVEVCNAKNLMPKDGQGTASAYVIVDFDG------QRRRTKTKFRDLNPQWD-ERLEFLVHDAESMPTEILEINLYN 79 (983)
Q Consensus 7 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~------~~~~T~~~~~t~nP~Wn-E~f~f~v~~~~~l~~~~L~v~V~~ 79 (983)
..|.|.|+.|+.|+. .+.|-+.|||.|++-| ..++|.+..|.+||+|| |+|+|.+.+|+ -..|.|.|++
T Consensus 1065 ~~lsv~vigaRHL~k-~gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe---~A~lRF~V~e 1140 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPK-LGRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPE---FAFLRFVVYE 1140 (1267)
T ss_pred eEEEEEEeecccccc-CCCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCc---eEEEEEEEec
Confidence 578899999999984 4556778999999843 45566777889999999 99999999985 6789999998
Q ss_pred CCCCCCCCCccEEEEEECccceecCCeeeEEEEceecCCcceeeeEEEEEEEEe
Q 002002 80 DKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQIKGEIGLKVYYI 133 (983)
Q Consensus 80 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~s~~~G~l~l~i~~~ 133 (983)
.|-++ ...|||++.+|+..+. ...+-.+|.+.-...-.-..|.+.+...
T Consensus 1141 eDmfs-~~~FiaqA~yPv~~ik----~GfRsVpLkN~ySEdlELaSLLv~i~m~ 1189 (1267)
T KOG1264|consen 1141 EDMFS-DPNFLAQATYPVKAIK----SGFRSVPLKNGYSEDLELASLLVFIEMR 1189 (1267)
T ss_pred ccccC-Ccceeeeeecchhhhh----ccceeeecccCchhhhhhhhheeeeEec
Confidence 88886 6679999999999886 3445667765522111234555555443
No 231
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.46 E-value=5.6e-08 Score=109.90 Aligned_cols=97 Identities=27% Similarity=0.449 Sum_probs=82.4
Q ss_pred CCCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEECC-------eEEeeeCcCCCCCCeeeeEEEEEeeecC-CCCCceEEE
Q 002002 4 SCNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFDG-------QRRRTKTKFRDLNPQWDERLEFLVHDAE-SMPTEILEI 75 (983)
Q Consensus 4 ~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-------~~~~T~~~~~t~nP~WnE~f~f~v~~~~-~l~~~~L~v 75 (983)
.....|.|.|+.|+++.+-|.+|.+||||+|++.. ..++|+|+.+|+||+|+|+|+|.|.... .-...-|.|
T Consensus 944 ~n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~~F 1023 (1103)
T KOG1328|consen 944 GNAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAMLHF 1023 (1103)
T ss_pred ccccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccceEEE
Confidence 44578999999999999999999999999999964 4689999999999999999999997532 222556899
Q ss_pred EEEeCCCCCCCCCccEEEEEECccce
Q 002002 76 NLYNDKKTGKRSTFLGKVKIAGSTFA 101 (983)
Q Consensus 76 ~V~~~~~~~~~d~~lG~~~i~l~~l~ 101 (983)
+|+|.|-.. .+||-|++.+.|..+.
T Consensus 1024 TVMDHD~L~-sNDFaGEA~L~Lg~vp 1048 (1103)
T KOG1328|consen 1024 TVMDHDYLR-SNDFAGEAFLELGDVP 1048 (1103)
T ss_pred Eeeccceec-ccccchHHHHhhCCCC
Confidence 999877665 8999999999888765
No 232
>PLN02352 phospholipase D epsilon
Probab=98.41 E-value=1.8e-06 Score=102.48 Aligned_cols=121 Identities=19% Similarity=0.196 Sum_probs=91.1
Q ss_pred CcEEEEEEEceecccccccc-CCCCCCCCCcEEEEEECCE-EEEeeeecCCCCCeeceEEEEEEecCC-CEEEEEEEeCC
Q 002002 586 PIGLLEVGIRGATNLLPVKT-KDGTRGTTDAYVVAKYGPK-WVRTRTILDRFNPRWNEQYTWDVYDPC-TVLTIGVFDNG 662 (983)
Q Consensus 586 ~~g~L~v~v~~a~~L~~~~~-~d~~~g~sDpy~~~~~~~~-~~rT~~~~~t~nP~Wne~~~~~v~~~~-~~l~i~v~D~d 662 (983)
.-|.|.++|++|+-+...-. .+......|||+.+.+++. ..|| .+.-||+|||.|.+++..+. ..++|+|.|
T Consensus 8 lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~-- 82 (758)
T PLN02352 8 FHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT-- 82 (758)
T ss_pred cccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec--
Confidence 45889999999984321100 0110122399999999884 5588 55669999999999999888 689999998
Q ss_pred CCCCcCCCCCCCCceeEEEEEEcccccCCCe-EEEEEEeeecCCCCCccceEEEEEEEEEec
Q 002002 663 RYKRDEAGKPGKDVRVGKIRVRLSTLDTNRV-YLNSYSLTVLLPGGAKKMGEIEIAVRFTCS 723 (983)
Q Consensus 663 ~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~-~~~~~~L~~~~~~g~~~~G~l~l~~~f~~~ 723 (983)
+ -.+||++.||+.+|..|.. ...|||+.....+..+ ...|++.++|+..
T Consensus 83 --~---------~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~ 132 (758)
T PLN02352 83 --K---------CSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNP-ELKLRFMLWFRPA 132 (758)
T ss_pred --C---------CeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCC-CCEEEEEEEEEEh
Confidence 2 2489999999999999865 8999999976543322 2589999999874
No 233
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.34 E-value=1.8e-06 Score=99.16 Aligned_cols=100 Identities=21% Similarity=0.322 Sum_probs=81.4
Q ss_pred EEEEEEEceeccccccccCCCCCCCCCcEEEEEECC-----EEEEee-eecCCCCCeec-eEEEEEEecCCC-EEEEEEE
Q 002002 588 GLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP-----KWVRTR-TILDRFNPRWN-EQYTWDVYDPCT-VLTIGVF 659 (983)
Q Consensus 588 g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~-----~~~rT~-~~~~t~nP~Wn-e~~~~~v~~~~~-~l~i~v~ 659 (983)
-.|.|.|+.|+.|+. .+ .|...|||+|++-+ ..++|. ++.+.+||+|| |.|+|.+.+|.- -|++.|+
T Consensus 1065 ~~lsv~vigaRHL~k----~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~ 1139 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPK----LG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVY 1139 (1267)
T ss_pred eEEEEEEeecccccc----CC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEe
Confidence 478999999999972 23 66778999999743 455555 55567799999 999999999875 8999999
Q ss_pred eCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeeec
Q 002002 660 DNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVL 703 (983)
Q Consensus 660 D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 703 (983)
|.|.++ ...|||++..|+..|..|- +..||++.
T Consensus 1140 eeDmfs--------~~~FiaqA~yPv~~ik~Gf---RsVpLkN~ 1172 (1267)
T KOG1264|consen 1140 EEDMFS--------DPNFLAQATYPVKAIKSGF---RSVPLKNG 1172 (1267)
T ss_pred cccccC--------Ccceeeeeecchhhhhccc---eeeecccC
Confidence 999998 3449999999999999885 67788754
No 234
>PF04842 DUF639: Plant protein of unknown function (DUF639); InterPro: IPR006927 The sequences in this family are plant proteins of unknown function.
Probab=98.16 E-value=8.7e-06 Score=94.23 Aligned_cols=151 Identities=17% Similarity=0.197 Sum_probs=112.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhcccccCCchhhHHHHHHHHHHhh-------------------hhc-cccccCCCCC
Q 002002 793 RSKANWFRVVGCLTRAATLARWLDGIRTWAHTPTTILVHVLLVAVVL-------------------SLR-FRYRQRVPQN 852 (983)
Q Consensus 793 ~~~~n~~R~~~~~~~~~~~~~~~~~~~~W~~~~~s~~~~~~~~~~v~-------------------~~~-y~~~~~~~~~ 852 (983)
..-.|+.=+++++.++..++.||..+..|+.|..|+...+++.+++| +|. |..+.+.+
T Consensus 484 GI~tNvav~kELL~Pl~~i~~~~~~l~~We~P~kt~~Fl~~~~~iI~r~wl~Y~~p~~Ll~~a~~Ml~~r~~~~~g~~-- 561 (683)
T PF04842_consen 484 GIDTNVAVMKELLFPLIEIAKWLQKLASWEEPLKTLVFLALFLYIIYRGWLGYIFPAFLLFSAVFMLWLRYQGRLGKS-- 561 (683)
T ss_pred CCccHHHHHHhccccHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCc--
Confidence 34569999999999999999999999999999999888777666554 221 10011100
Q ss_pred CCCCCCcccCCCCCccccccCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHhhhccccChhhHHHHHHHHH
Q 002002 853 MDPRLSYVDVVGPDELDEEFDGFPTSRPSEVVRIRYDRLRALAGRAQTLLGDVAAQGERLEALFNWRDPRATWIFVVLCL 932 (983)
Q Consensus 853 ~d~~~s~~~~~~~~~~~~e~d~~~~~~~~~~~~~r~~~l~~~~~~vQ~~~~~~a~~~Er~~~l~~w~~p~~t~~~~~~~~ 932 (983)
-++. ++. ..++..-.++.=++|+-..++.+.+..+=-.+=|+++++-|..|.+|-.+.+.++
T Consensus 562 ----------------~~~v-~V~-~pP~~nTvEqilalQ~Ais~~E~~iQ~~NI~LLKiRsllls~~PqaT~~Va~~Ll 623 (683)
T PF04842_consen 562 ----------------FGEV-TVR-DPPPKNTVEQILALQEAISQLEEYIQAANIVLLKIRSLLLSKFPQATNKVALALL 623 (683)
T ss_pred ----------------cceE-Eec-CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 0111 111 1122233566777777788888888888888999999999999999999999999
Q ss_pred HHHHHHhhhhhhhhhhheeeec-ccCCCCCCC
Q 002002 933 VASLVFYAVPFKLFVLGSGFYY-LRHPRFRGD 963 (983)
Q Consensus 933 ~~~~~l~~vp~r~~~~~~g~~~-~r~p~~~~~ 963 (983)
++|+++.++|+||++++.-+.. .|+=.+|..
T Consensus 624 ~~A~~LavvP~kyil~~v~l~~FTre~~~Rr~ 655 (683)
T PF04842_consen 624 GLAAVLAVVPFKYILLFVFLEVFTRESPFRRE 655 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCchh
Confidence 9999999999999999988776 344336654
No 235
>PLN02352 phospholipase D epsilon
Probab=98.16 E-value=1.2e-05 Score=95.55 Aligned_cols=118 Identities=14% Similarity=0.276 Sum_probs=88.8
Q ss_pred cEEEEEEEEeeCCCCCCC----C-CCCCeEEEEEECC-eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeC
Q 002002 7 RKLIVEVCNAKNLMPKDG----Q-GTASAYVIVDFDG-QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYND 80 (983)
Q Consensus 7 ~~L~V~v~~a~~L~~~d~----~-g~~dPyv~v~~~~-~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~ 80 (983)
+.|.++|.+|+-+...-. . ...+|||+|.+++ ...|| .+.-||.|+|+|.+.+...- ...+.|.|-|
T Consensus 10 g~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~---~~~~~f~vk~- 82 (758)
T PLN02352 10 GTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPL---DSTITITLKT- 82 (758)
T ss_pred cceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeec---CCcEEEEEec-
Confidence 679999999984433211 1 1239999999988 56788 55669999999999997751 2579999953
Q ss_pred CCCCCCCCccEEEEEECccceecCCeeeEEEEceecCCcceeeeEEEEEEEEecCC
Q 002002 81 KKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQIKGEIGLKVYYIDED 136 (983)
Q Consensus 81 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~s~~~G~l~l~i~~~~~~ 136 (983)
...+||.+.+|..++...+...+.||++....++......|++++.|.+..
T Consensus 83 -----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 133 (758)
T PLN02352 83 -----KCSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPELKLRFMLWFRPAE 133 (758)
T ss_pred -----CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCCCEEEEEEEEEEhh
Confidence 257999999999999843344899999988776643224999999998643
No 236
>PF06398 Pex24p: Integral peroxisomal membrane peroxin; InterPro: IPR010482 Peroxisomes play diverse roles in the cell, compartmentalising many activities related to lipid metabolism and functioning in the decomposition of toxic hydrogen peroxide. Sequence similarity was identified between two hypothetical proteins and the peroxin integral membrane protein Pex24p [].
Probab=98.14 E-value=1.4e-05 Score=90.76 Aligned_cols=161 Identities=19% Similarity=0.283 Sum_probs=104.9
Q ss_pred eehhhhhHHHHHHHHHHHHHHHHH---HHhhcccccCCchhhHHHHHHHHHHhh-------------------hhccccc
Q 002002 789 WSMRRSKANWFRVVGCLTRAATLA---RWLDGIRTWAHTPTTILVHVLLVAVVL-------------------SLRFRYR 846 (983)
Q Consensus 789 ~s~~~~~~n~~R~~~~~~~~~~~~---~~~~~~~~W~~~~~s~~~~~~~~~~v~-------------------~~~y~~~ 846 (983)
+|...+.+|+.|+.+.+..+..+. ..+.++++|++|..|..+.++|.++|+ +..|..+
T Consensus 3 lS~~ll~~n~~~l~~~l~~~f~~~~~~d~vl~il~W~~p~~t~~~L~l~t~~~l~p~l~l~~lp~~~ll~~il~~~yl~~ 82 (359)
T PF06398_consen 3 LSSPLLSSNFPRLSSRLGPIFPFQLILDRVLRILTWTNPDYTLSFLLLYTFLCLNPYLLLLSLPLGLLLFGILLPSYLYR 82 (359)
T ss_pred cChHHHHhChHHHHHHHHHhhHHHHHHHHHHHeEEeCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHee
Confidence 577888999999999999998888 999999999999777666665554443 1223222
Q ss_pred cCCCCCCCCCCCcccCCCCCccccccCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHhh----hccccChh
Q 002002 847 QRVPQNMDPRLSYVDVVGPDELDEEFDGFPTSRPSEVVRIRYDRLRALAGRAQTLLGDVAAQGERLEA----LFNWRDPR 922 (983)
Q Consensus 847 ~~~~~~~d~~~s~~~~~~~~~~~~e~d~~~~~~~~~~~~~r~~~l~~~~~~vQ~~~~~~a~~~Er~~~----l~~w~~p~ 922 (983)
+|..... +.. ...+.+.+.+..| .+......+....+.+||.++.+.+....+.. .++|+++.
T Consensus 83 --~p~~~~~-~~~----~~~~~~~~~~~~p------tl~~~s~e~~~nL~dlQn~m~~~~~~~d~~~~~~~~~~~f~~e~ 149 (359)
T PF06398_consen 83 --HPSPTSS-LPK----SYEDHNPEPSEGP------TLDKPSREIVMNLRDLQNKMEDLSDPYDFLSSFLYPYLNFSDEN 149 (359)
T ss_pred --cCCCccc-ccc----cccccCCCcCCCC------CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCccc
Confidence 1111100 000 0001111111111 11111234555667889999988888887764 55699999
Q ss_pred hHHHHHHHHHHHHHHHh----hhhhhhhhhheeeec-ccCCCCCC
Q 002002 923 ATWIFVVLCLVASLVFY----AVPFKLFVLGSGFYY-LRHPRFRG 962 (983)
Q Consensus 923 ~t~~~~~~~~~~~~~l~----~vp~r~~~~~~g~~~-~r~p~~~~ 962 (983)
.|.++.++|+++.+.++ ++|.|++++++|... +-||..+.
T Consensus 150 ~s~~~f~~l~~~~~~~~l~~~~ip~r~~ll~~g~~~l~~Hp~~~~ 194 (359)
T PF06398_consen 150 LSSLIFLLLLLSPILLLLLSPFIPWRFVLLVSGAFVLLYHPPWRQ 194 (359)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHhhcCCcHHH
Confidence 99999888887777654 679999999999443 56777764
No 237
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=98.01 E-value=1.5e-05 Score=72.73 Aligned_cols=111 Identities=20% Similarity=0.316 Sum_probs=78.9
Q ss_pred EEEEEceecccccccc------CCC---CCCCCCcEEEEEEC----CEEEEeeeecCCCCCeeceEEEEEEe--------
Q 002002 590 LEVGIRGATNLLPVKT------KDG---TRGTTDAYVVAKYG----PKWVRTRTILDRFNPRWNEQYTWDVY-------- 648 (983)
Q Consensus 590 L~v~v~~a~~L~~~~~------~d~---~~g~sDpy~~~~~~----~~~~rT~~~~~t~nP~Wne~~~~~v~-------- 648 (983)
|.|.|++|.||.++-. .+. ..-..++||.+.+. .+..+|+++.++..|.|+..++|++.
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 4678889999854211 010 01235899999853 47889999999999999999999875
Q ss_pred cC--------CCEEEEEEEeCCCCCCcC--CCCCCCCceeEEEEEEcccccCCC-eEEEEEEe
Q 002002 649 DP--------CTVLTIGVFDNGRYKRDE--AGKPGKDVRVGKIRVRLSTLDTNR-VYLNSYSL 700 (983)
Q Consensus 649 ~~--------~~~l~i~v~D~d~~~~~~--~~~~~~d~~lG~~~i~l~~l~~~~-~~~~~~~L 700 (983)
+. ...+.++||..+.-+..+ ......|-.||.+.||+.+|...+ -.+.|||+
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 21 247999999988754211 011357889999999999987543 35789875
No 238
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=97.87 E-value=1e-05 Score=96.72 Aligned_cols=109 Identities=24% Similarity=0.269 Sum_probs=89.0
Q ss_pred CcEEEEEEEEeeCCCCCCCCCCCCeEEEEEECC-----eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeC
Q 002002 6 NRKLIVEVCNAKNLMPKDGQGTASAYVIVDFDG-----QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYND 80 (983)
Q Consensus 6 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~ 80 (983)
+++|.|-|..|++|.-...+..+||||+..+-- -+++|+++++|.||.|||.+.......+.+....|.+.||..
T Consensus 1523 ~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~ 1602 (1639)
T KOG0905|consen 1523 NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSN 1602 (1639)
T ss_pred CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecc
Confidence 578999999999996554455799999999942 478899999999999999998885554556678999999977
Q ss_pred CCCCCCCCccEEEEEECccceecCCeeeEEEEceec
Q 002002 81 KKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKR 116 (983)
Q Consensus 81 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~ 116 (983)
+... .+.|+|.+.++|..+. ...+...||.|...
T Consensus 1603 ~~~~-en~~lg~v~i~L~~~~-l~kE~~~Wy~lg~~ 1636 (1639)
T KOG0905|consen 1603 GGLL-ENVFLGGVNIPLLKVD-LLKESVGWYNLGAC 1636 (1639)
T ss_pred ccee-eeeeeeeeecchhhcc-hhhhhcceeecccc
Confidence 7665 7899999999999886 33455589999765
No 239
>PF11696 DUF3292: Protein of unknown function (DUF3292); InterPro: IPR021709 This eukaryotic family of proteins has no known function.
Probab=97.86 E-value=0.00017 Score=83.69 Aligned_cols=54 Identities=15% Similarity=0.258 Sum_probs=47.4
Q ss_pred CCcceeehhhhhHHHHHHHH-HHHHHHHHHHHhhcccccCCchhhHHHHHHHHHH
Q 002002 784 TDTHVWSMRRSKANWFRVVG-CLTRAATLARWLDGIRTWAHTPTTILVHVLLVAV 837 (983)
Q Consensus 784 ~~~~~~s~~~~~~n~~R~~~-~~~~~~~~~~~~~~~~~W~~~~~s~~~~~~~~~~ 837 (983)
.+...||..++++|+.|+-- ++-++.++.+.+..+.+|+.|.+|....++|+++
T Consensus 83 a~~e~FspdkLRa~lERlY~tv~v~~~~~~khi~RLrSW~eprRT~~fc~vYf~a 137 (642)
T PF11696_consen 83 AEDEEFSPDKLRANLERLYMTVVVGLAAFIKHIARLRSWREPRRTAAFCAVYFIA 137 (642)
T ss_pred cccccCChHHHHHHhHhheeehHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHH
Confidence 46788999999999999976 7789999999999999999999998887776543
No 240
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=97.63 E-value=0.00053 Score=78.10 Aligned_cols=178 Identities=13% Similarity=0.178 Sum_probs=115.5
Q ss_pred eeeeec--CC-CccceEEEEeecCCCCCeEEEEEEcCCcCCccccCCceeEEEEEeccccCCCCCCCCCCCCceEEcccC
Q 002002 304 IKTKSQ--AD-KDWDQVFAFDKEGLNSTSLEVSVWSEEKKENEECTENCLGTVLFDLQEVPKRVPPDSPLAPQWYSLESE 380 (983)
Q Consensus 304 ~kTk~~--~~-P~Wne~f~f~~~~~~~~~l~v~V~d~d~~~~d~~~d~~lG~~~i~l~~l~~~~~~~~~l~~~w~~L~~~ 380 (983)
.+|.++ .+ |.|-+.|.+...-...+.|++.++|.+....++...+|+|++...++.+........++ .++..
T Consensus 43 ~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~~~l-----~~~~~ 117 (529)
T KOG1327|consen 43 GRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLTGPL-----LLKPG 117 (529)
T ss_pred cceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhhhhh-----hcccC
Confidence 478777 55 99999988764333367899999997743334668899999999999887544322111 12211
Q ss_pred -CCCCceEEEEEEeccCcchhhhhhcccCCCCCCcccccccccCCceEEEEEEEEEeeCCCCCCCCCCCCCCCCcEEEEE
Q 002002 381 -KLPGNDVMLAVWIGTQADEAFQEAWQSDSGGLIPETRAKVYLSPKLWYLRLTVIQTQDLQPGSGSEPKVRSPELYVKGQ 459 (983)
Q Consensus 381 -~~~~g~i~l~~~~g~~~de~~~~~~~s~~~~~~~~~~~~~~~~p~l~~L~V~Viea~~L~~~~~~~d~~~~sdpyv~v~ 459 (983)
....|.|.+.+- .+.++ +. ...-.++|++|... |..+++|||..++
T Consensus 118 ~~~~~g~iti~ae-----------e~~~~----------------~~--~~~~~~~~~~ld~k----d~f~ksd~~l~~~ 164 (529)
T KOG1327|consen 118 KNAGSGTITISAE-----------EDESD----------------ND--VVQFSFRAKNLDPK----DFFSKSDPYLEFY 164 (529)
T ss_pred ccCCcccEEEEee-----------ccccc----------------Cc--eeeeeeeeeecCcc----cccccCCcceEEE
Confidence 112355544441 01110 00 11123457888877 8899999998774
Q ss_pred E--C----CeEEEeeeeeeccCCCCCCCCcccceEE-E--EecCCCCCcEEEEEEeCc---CCceeEEEEEecccccc
Q 002002 460 L--G----AQLFKTGRTSVGLSPSSSANPTWNEDLV-F--VAAEPFEPFLVVTVEDVT---NGCSVGHARIQMSTVER 525 (983)
Q Consensus 460 l--g----~~~~rT~~~~~~~~~~~t~nP~wne~f~-f--~~~~~~~~~L~i~V~D~d---~d~~lG~~~i~L~~l~~ 525 (983)
= + ...+||.+.+ +++||.|..... + ......+..+.+.+||.+ +++++|++..+++++..
T Consensus 165 ~~~~d~s~~~~~~tEv~~------n~l~p~w~~~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 165 KRVDDGSTQMLYRTEVVK------NTLNPQWAPFSISLQSLCSKDGNRPIQIECYDYDSNGKHDLIGKFQTTLSELQE 236 (529)
T ss_pred EecCCCceeeccccceec------cCCCCcccccccchhhhcccCCCCceEEEEeccCCCCCcCceeEecccHHHhcc
Confidence 3 2 2457898885 599999987421 1 111122457889999988 67999999999999864
No 241
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=97.37 E-value=0.00016 Score=86.94 Aligned_cols=100 Identities=26% Similarity=0.291 Sum_probs=81.7
Q ss_pred cCEEEEEEEEeecCC---CCCCCCcEEEEEEcCe-----eeeeeec--CC-CccceEEEEe---ecCCCCCeEEEEEEcC
Q 002002 272 MPFLYVRVLKAKRAG---NVSNGSLYAKLVIGTH-----SIKTKSQ--AD-KDWDQVFAFD---KEGLNSTSLEVSVWSE 337 (983)
Q Consensus 272 ~~~L~V~v~~a~~L~---~~~~~dPyv~v~~~~~-----~~kTk~~--~~-P~Wne~f~f~---~~~~~~~~l~v~V~d~ 337 (983)
.+.|.|-|..|++|+ .+..+||||+.++-.. +.|||++ +. |.|||.+.+. ++.++...|.++||..
T Consensus 1523 ~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~ 1602 (1639)
T KOG0905|consen 1523 NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSN 1602 (1639)
T ss_pred CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecc
Confidence 488999999999996 2346799999999643 4789988 88 9999988854 6777788999999997
Q ss_pred CcCCccccCCceeEEEEEeccccCCCCCCCCCCCCceEEcccC
Q 002002 338 EKKENEECTENCLGTVLFDLQEVPKRVPPDSPLAPQWYSLESE 380 (983)
Q Consensus 338 d~~~~d~~~d~~lG~~~i~l~~l~~~~~~~~~l~~~w~~L~~~ 380 (983)
+. +..+.+||.+.++|.++...+. ...||+|...
T Consensus 1603 ~~----~~en~~lg~v~i~L~~~~l~kE-----~~~Wy~lg~~ 1636 (1639)
T KOG0905|consen 1603 GG----LLENVFLGGVNIPLLKVDLLKE-----SVGWYNLGAC 1636 (1639)
T ss_pred cc----eeeeeeeeeeecchhhcchhhh-----hcceeecccc
Confidence 63 6689999999999998877654 2489999653
No 242
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=97.36 E-value=9.8e-05 Score=67.50 Aligned_cols=105 Identities=24% Similarity=0.399 Sum_probs=76.7
Q ss_pred EEEEEEEeeCCCCCC-------C--C----CCCCeEEEEEE----CCeEEeeeCcCCCCCCeeeeEEEEEeee-------
Q 002002 9 LIVEVCNAKNLMPKD-------G--Q----GTASAYVIVDF----DGQRRRTKTKFRDLNPQWDERLEFLVHD------- 64 (983)
Q Consensus 9 L~V~v~~a~~L~~~d-------~--~----g~~dPyv~v~~----~~~~~~T~~~~~t~nP~WnE~f~f~v~~------- 64 (983)
|.|.|.+|.+|...- . . =-.|+||++.+ +++..+|+++-++.-|.|+-+++|.+.-
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 468889998887421 0 0 02589999986 3478899999999999999999998751
Q ss_pred -----cCCCCCceEEEEEEeCCCCC---------CCCCccEEEEEECccceecCCeeeEEEEc
Q 002002 65 -----AESMPTEILEINLYNDKKTG---------KRSTFLGKVKIAGSTFAKVGSESSVYYPL 113 (983)
Q Consensus 65 -----~~~l~~~~L~v~V~~~~~~~---------~~d~~lG~~~i~l~~l~~~~~~~~~w~~L 113 (983)
.+.|....+.++||+...-+ .+|-+||.+.||+.+|.....-...||++
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 12345778999999754321 14558999999999998544445678874
No 243
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=97.27 E-value=0.039 Score=60.91 Aligned_cols=239 Identities=15% Similarity=0.250 Sum_probs=145.4
Q ss_pred EEEEEEEeecCCCCCCCCcEEEEEEcCeeeeeeec--CC-CccceEEEEeec-------CCCCCeEEEEEEcCCcCCccc
Q 002002 275 LYVRVLKAKRAGNVSNGSLYAKLVIGTHSIKTKSQ--AD-KDWDQVFAFDKE-------GLNSTSLEVSVWSEEKKENEE 344 (983)
Q Consensus 275 L~V~v~~a~~L~~~~~~dPyv~v~~~~~~~kTk~~--~~-P~Wne~f~f~~~-------~~~~~~l~v~V~d~d~~~~d~ 344 (983)
+.|+|++|++.+....-.-+++.+++|+...|..+ +. |.||...++..+ ..+..+|.+++|..|.. -
T Consensus 2 ivl~i~egr~F~~~~~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~---~ 78 (340)
T PF12416_consen 2 IVLSILEGRNFPQRPRHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGS---T 78 (340)
T ss_pred EEEEEecccCCCCCCCccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCC---C
Confidence 67899999997755455778999999999999987 55 999999998754 44688999999987621 3
Q ss_pred cCCceeEEEEEeccccCCCCCCCCCCCCceEEcccC----CCCCceEEEEEEeccCcch---hhhh-hccc--CCCC---
Q 002002 345 CTENCLGTVLFDLQEVPKRVPPDSPLAPQWYSLESE----KLPGNDVMLAVWIGTQADE---AFQE-AWQS--DSGG--- 411 (983)
Q Consensus 345 ~~d~~lG~~~i~l~~l~~~~~~~~~l~~~w~~L~~~----~~~~g~i~l~~~~g~~~de---~~~~-~~~s--~~~~--- 411 (983)
...+.+|++.+||.........+...++.||+|-+. .+.+-+|.+.+.+...... .+.. .+.. +..+
T Consensus 79 ~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~~~~~~~~~~~~~~~~p~~~~~~~ 158 (340)
T PF12416_consen 79 GKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDSKPQTPDFESFKAKPAPPRQGHVP 158 (340)
T ss_pred CcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEEeccccccCCccccccccCCCcccCCCc
Confidence 578999999999988722222333567899999876 2346777777765332221 0000 0000 0000
Q ss_pred ----CCcc-------ccccccc-------CCceEEEEEEEEEeeCCCCCCCCC--CCCCCCCcEEEEEE-CCeEEEeeee
Q 002002 412 ----LIPE-------TRAKVYL-------SPKLWYLRLTVIQTQDLQPGSGSE--PKVRSPELYVKGQL-GAQLFKTGRT 470 (983)
Q Consensus 412 ----~~~~-------~~~~~~~-------~p~l~~L~V~Viea~~L~~~~~~~--d~~~~sdpyv~v~l-g~~~~rT~~~ 470 (983)
.... .....+. ...+..|.|++-.|.+|....... +..+.+..|....+ |+. ..|...
T Consensus 159 ~~~~~~~~~~l~~~l~~~eg~lQIGp~~~~~d~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllGn~-Vt~~~F 237 (340)
T PF12416_consen 159 PPNSLLSPATLIPVLLEDEGLLQIGPPDLCCDLFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLGND-VTTEPF 237 (340)
T ss_pred ccccccCccceeEEEccCCceEeeCCchhcCceEEEEEehhhhhhHHhhccccccccCCCccEEEEEEecCcE-eEeeec
Confidence 0000 0000000 123566999999999876431100 11123455555655 553 444444
Q ss_pred eeccCCCCCCCCccc--ceEEEEec---------CCCCCcEEEEEEeCcCCceeEEEEEecccccc
Q 002002 471 SVGLSPSSSANPTWN--EDLVFVAA---------EPFEPFLVVTVEDVTNGCSVGHARIQMSTVER 525 (983)
Q Consensus 471 ~~~~~~~~t~nP~wn--e~f~f~~~---------~~~~~~L~i~V~D~d~d~~lG~~~i~L~~l~~ 525 (983)
. ...+|.|. +...+.+. ......|.|.++- .+..||.+.|++..+..
T Consensus 238 ~------~l~~~~f~~er~s~vRirSS~~~L~~yf~~~~~L~I~Lc~--g~~~Lg~~~v~l~~Ll~ 295 (340)
T PF12416_consen 238 K------SLSSPSFPPERASGVRIRSSLRVLRRYFQQIPKLQIHLCC--GNQSLGSTSVPLQPLLP 295 (340)
T ss_pred c------ccCCCCcCeeeeeEEeecccHHHHHHHHhhCCCeEEEEee--CCcEEEEEEEEhhhccC
Confidence 3 24566543 33323332 1223467777766 47889999999999864
No 244
>PLN02964 phosphatidylserine decarboxylase
Probab=97.27 E-value=0.00039 Score=82.58 Aligned_cols=88 Identities=24% Similarity=0.326 Sum_probs=72.9
Q ss_pred CCcEEEEEEEceeccccccccCCCCCCCCCcEEEE-EECCEEEEeeeecCCCCCeeceEEEEEEecCC-CEEEEEEEeCC
Q 002002 585 SPIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVA-KYGPKWVRTRTILDRFNPRWNEQYTWDVYDPC-TVLTIGVFDNG 662 (983)
Q Consensus 585 ~~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~-~~~~~~~rT~~~~~t~nP~Wne~~~~~v~~~~-~~l~i~v~D~d 662 (983)
.-.|...+++++|+ |+ . .|+|+++ .+|.+.+||.+.++|+||+||+...|.|.... ...+|.|||++
T Consensus 51 ~~~~~~~~~~~~~~----~~---~----~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (644)
T PLN02964 51 DFSGIALLTLVGAE----MK---F----KDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETN 119 (644)
T ss_pred cccCeEEEEeehhh----hc---c----CCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecC
Confidence 35789999999987 32 2 4888865 57889999999999999999999999996533 35799999999
Q ss_pred CCCCcCCCCCCCCceeEEEEEEcccccCC
Q 002002 663 RYKRDEAGKPGKDVRVGKIRVRLSTLDTN 691 (983)
Q Consensus 663 ~~~~~~~~~~~~d~~lG~~~i~l~~l~~~ 691 (983)
.++ +++++|.+.++|..+...
T Consensus 120 ~~s--------~n~lv~~~e~~~t~f~~k 140 (644)
T PLN02964 120 RLS--------KNTLVGYCELDLFDFVTQ 140 (644)
T ss_pred CCC--------HHHhhhheeecHhhccHH
Confidence 998 788999999988877543
No 245
>PLN02964 phosphatidylserine decarboxylase
Probab=97.03 E-value=0.0011 Score=78.97 Aligned_cols=88 Identities=17% Similarity=0.335 Sum_probs=72.5
Q ss_pred cCCCcEEEEEEEEeeCCCCCCCCCCCCeE-EEEEECCeEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCC
Q 002002 3 ESCNRKLIVEVCNAKNLMPKDGQGTASAY-VIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDK 81 (983)
Q Consensus 3 ~~~~~~L~V~v~~a~~L~~~d~~g~~dPy-v~v~~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~ 81 (983)
+.-.+.+.+++++|+ ++ ..||| +.+.++.+.+||.+.++|+||+||+...|.+...+ .....+.||+.+
T Consensus 50 ~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~---~~~~~~~~~~~~ 119 (644)
T PLN02964 50 EDFSGIALLTLVGAE----MK---FKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNG---PHLARISVFETN 119 (644)
T ss_pred ccccCeEEEEeehhh----hc---cCCcEEEEEEecceeeeeccccccCCcccchhhceEeccCC---cceEEEEEEecC
Confidence 344577889999987 22 35886 56788889999999999999999999999986643 445699999988
Q ss_pred CCCCCCCccEEEEEECccce
Q 002002 82 KTGKRSTFLGKVKIAGSTFA 101 (983)
Q Consensus 82 ~~~~~d~~lG~~~i~l~~l~ 101 (983)
+++ .++++|.+.+++..+.
T Consensus 120 ~~s-~n~lv~~~e~~~t~f~ 138 (644)
T PLN02964 120 RLS-KNTLVGYCELDLFDFV 138 (644)
T ss_pred CCC-HHHhhhheeecHhhcc
Confidence 886 8999999999998887
No 246
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=96.96 E-value=0.00061 Score=57.79 Aligned_cols=97 Identities=15% Similarity=0.233 Sum_probs=70.1
Q ss_pred EEEEEEeeCCCCCCCCC-CCCeEEE--EEECC-eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCCC
Q 002002 10 IVEVCNAKNLMPKDGQG-TASAYVI--VDFDG-QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKTGK 85 (983)
Q Consensus 10 ~V~v~~a~~L~~~d~~g-~~dPyv~--v~~~~-~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~~ 85 (983)
-++|+.|++|.=-..-| ...-|++ +.+.. ...+|+.++...||.|.|+|.|.+.. ..+.+-.|-|.|+. ...
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l-~qL~~V~L~fsv~~--~~~- 77 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKL-QNLQTVRLVFKIQT--QTP- 77 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHH-hhccceEEEEEeec--cCC-
Confidence 47899999987432222 2334554 34444 68899999999999999999999865 35667789999986 343
Q ss_pred CCCccEEEEEECccceecCCeeeEEEE
Q 002002 86 RSTFLGKVKIAGSTFAKVGSESSVYYP 112 (983)
Q Consensus 86 ~d~~lG~~~i~l~~l~~~~~~~~~w~~ 112 (983)
+...||.+.+.+.++- .+....|..
T Consensus 78 RKe~iG~~sL~l~s~g--eeE~~HW~e 102 (103)
T cd08684 78 RKRTIGECSLSLRTLS--TQETDHWLE 102 (103)
T ss_pred ccceeeEEEeecccCC--HHHhhhhhc
Confidence 6789999999999864 244555643
No 247
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.95 E-value=0.0005 Score=73.87 Aligned_cols=109 Identities=23% Similarity=0.325 Sum_probs=88.2
Q ss_pred CCcEEEEEEEEeeCCCCCCCCC-CCCeEEEEEECC-----eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEE
Q 002002 5 CNRKLIVEVCNAKNLMPKDGQG-TASAYVIVDFDG-----QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLY 78 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~~g-~~dPyv~v~~~~-----~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~ 78 (983)
..+.|.|.|++|++|..+.+.+ .++|||+|++-+ .+.+|+...+|++|.+.+...|.-..+ ...|.+.||
T Consensus 267 ~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~----~k~Lq~tv~ 342 (405)
T KOG2060|consen 267 SKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPP----GKYLQGTVW 342 (405)
T ss_pred ccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCC----ccEEEEEEe
Confidence 4568999999999999887654 589999999832 577899999999999999988887766 789999999
Q ss_pred eCCCCCCCCCccEEEEEECccceecCCeeeEEEEceecC
Q 002002 79 NDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRS 117 (983)
Q Consensus 79 ~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~ 117 (983)
-+..-...+.|+|.+.+-+.++-........||+|...+
T Consensus 343 gdygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfgss 381 (405)
T KOG2060|consen 343 GDYGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGSS 381 (405)
T ss_pred ccccccchHHHhhHHHHHhhhhccccccceeeeeccCCc
Confidence 644322256899999999999875555788999997654
No 248
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=96.72 E-value=0.00066 Score=73.43 Aligned_cols=124 Identities=15% Similarity=0.233 Sum_probs=92.6
Q ss_pred cEEEEEEEEeeCCCCCCCCCCCCeEEEEEEC-----CeEEeeeCcCCCCCCeeeeEEEEEeeecC--------CCCCceE
Q 002002 7 RKLIVEVCNAKNLMPKDGQGTASAYVIVDFD-----GQRRRTKTKFRDLNPQWDERLEFLVHDAE--------SMPTEIL 73 (983)
Q Consensus 7 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~-----~~~~~T~~~~~t~nP~WnE~f~f~v~~~~--------~l~~~~L 73 (983)
..|.+.|+++.++.-..+.--.|-||+++|- .++.+|.++++|.+|.|+|.|-+++.... .+....+
T Consensus 367 ~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~ 446 (523)
T KOG3837|consen 367 QELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGK 446 (523)
T ss_pred hHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCe
Confidence 4566778888877654433345789999882 26788999999999999999999986511 1235679
Q ss_pred EEEEEeCCCCCCCCCccEEEEEECccceecCCeeeEEEEceecCCcceeeeEEEEEEEEe
Q 002002 74 EINLYNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQIKGEIGLKVYYI 133 (983)
Q Consensus 74 ~v~V~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~s~~~G~l~l~i~~~ 133 (983)
.|++|+...+.++|.|+|.+.+.+..|. .......+|+|.+.. ..+.|.|.+++.+-
T Consensus 447 kfeifhkggf~rSdkl~gt~nikle~Le-n~cei~e~~~l~DGR--K~vGGkLevKvRiR 503 (523)
T KOG3837|consen 447 KFEIFHKGGFNRSDKLTGTGNIKLEILE-NMCEICEYLPLKDGR--KAVGGKLEVKVRIR 503 (523)
T ss_pred eEEEeeccccccccceeceeeeeehhhh-cccchhhceeccccc--cccCCeeEEEEEEe
Confidence 9999998888889999999999999876 334455678876542 24668888888664
No 249
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=96.67 E-value=0.0019 Score=54.84 Aligned_cols=95 Identities=23% Similarity=0.389 Sum_probs=66.5
Q ss_pred EEEEEEeeCCCCCCCCCCCCCCCCcEEEEEE--CC-eEEEeeeeeeccCCCCCCCCcccceEEEEecCCC--CCcEEEEE
Q 002002 430 RLTVIQTQDLQPGSGSEPKVRSPELYVKGQL--GA-QLFKTGRTSVGLSPSSSANPTWNEDLVFVAAEPF--EPFLVVTV 504 (983)
Q Consensus 430 ~V~Viea~~L~~~~~~~d~~~~sdpyv~v~l--g~-~~~rT~~~~~~~~~~~t~nP~wne~f~f~~~~~~--~~~L~i~V 504 (983)
-|+|+.|+||.-.. .-...+..|++--+ .. ...||.... .+.||.|.|+|.|.+.... +-.|.|+|
T Consensus 2 witv~~c~d~s~~~---~~~e~~~i~ikg~~tl~kpv~~KsS~rr------gs~d~~f~ETFVFqi~l~qL~~V~L~fsv 72 (103)
T cd08684 2 WITVLKCKDLSWPS---SCGENPTIYIKGILTLPKPVHFKSSAKE------GSNDIEFMETFVFAIKLQNLQTVRLVFKI 72 (103)
T ss_pred EEEEEEeccccccc---ccCcCCeeEEEEEEecCCCccccchhhc------CCCChhHHHHHHHHHHHhhccceEEEEEe
Confidence 47899999987531 22334566777655 22 334555442 6899999999999876444 44788999
Q ss_pred EeCc-CCceeEEEEEecccccccccCCCCCcceEEe
Q 002002 505 EDVT-NGCSVGHARIQMSTVERRIDDRAEPKSRWFN 539 (983)
Q Consensus 505 ~D~d-~d~~lG~~~i~L~~l~~~~~~~~~~~~~w~~ 539 (983)
+..- +.+.||.|.+.|.++..+ ...+|.+
T Consensus 73 ~~~~~RKe~iG~~sL~l~s~gee------E~~HW~e 102 (103)
T cd08684 73 QTQTPRKRTIGECSLSLRTLSTQ------ETDHWLE 102 (103)
T ss_pred eccCCccceeeEEEeecccCCHH------Hhhhhhc
Confidence 9865 899999999999988653 3455654
No 250
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=96.38 E-value=0.03 Score=54.17 Aligned_cols=131 Identities=19% Similarity=0.232 Sum_probs=87.9
Q ss_pred CCCcEEEEEEEEeeCCCCCCCC--CCCC--eEEEEEECCeEEeeeCcCCCCCCeeeeEEEEEeeecC--------C--CC
Q 002002 4 SCNRKLIVEVCNAKNLMPKDGQ--GTAS--AYVIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHDAE--------S--MP 69 (983)
Q Consensus 4 ~~~~~L~V~v~~a~~L~~~d~~--g~~d--Pyv~v~~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~~--------~--l~ 69 (983)
.+...|+++|..++-....... |..+ -.+-+.|++|+++|+.+..+.+|.++|.|.|.+.... . ..
T Consensus 6 ~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~ 85 (156)
T PF15627_consen 6 PGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSI 85 (156)
T ss_pred CCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcC
Confidence 3457899999998766543221 2333 3455667899999999999999999999999986532 0 12
Q ss_pred CceEEEEEEeCCCCCCCCCccEEEEEECccceecCCe-eeEEEEceecCCcce-eeeEEEEEEEEecC
Q 002002 70 TEILEINLYNDKKTGKRSTFLGKVKIAGSTFAKVGSE-SSVYYPLEKRSVFSQ-IKGEIGLKVYYIDE 135 (983)
Q Consensus 70 ~~~L~v~V~~~~~~~~~d~~lG~~~i~l~~l~~~~~~-~~~w~~L~~~~~~s~-~~G~l~l~i~~~~~ 135 (983)
.+.|.+.|..-+..+ ...++|+..++-..+...+.. ...-..|...+..++ ..|-|.+++.+.+.
T Consensus 86 ~~pihivli~~d~~~-~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lELlP~ 152 (156)
T PF15627_consen 86 SDPIHIVLIRTDPSG-ETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVGPESKVPVGILDLRLELLPN 152 (156)
T ss_pred CCceEEEEEEecCCC-ceEeeeeceehHHHHhccCCCccceeEEEeccCCCCccceeEEEEEEEeecC
Confidence 456777777555544 458999999998887733221 123334444433322 67999999987753
No 251
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.38 E-value=0.0018 Score=69.82 Aligned_cols=108 Identities=21% Similarity=0.261 Sum_probs=85.3
Q ss_pred CCcEEEEEEEceeccccccccCCCCCCCCCcEEEEEEC-C----EEEEeeeecCCCCCeeceEEEEEEecCCCEEEEEEE
Q 002002 585 SPIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYG-P----KWVRTRTILDRFNPRWNEQYTWDVYDPCTVLTIGVF 659 (983)
Q Consensus 585 ~~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~-~----~~~rT~~~~~t~nP~Wne~~~~~v~~~~~~l~i~v~ 659 (983)
..+|.|+|.|++|++|.+. -+....++||+.|++- + ...+|+...+|++|.+..+..|.-.-+...|.+.||
T Consensus 266 d~~g~l~vEii~ar~l~~k---~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~ 342 (405)
T KOG2060|consen 266 DSKGDLEVEIIRARGLVVK---PGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVW 342 (405)
T ss_pred cccCceeEEEEeccccccc---CCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCCccEEEEEEe
Confidence 3589999999999999763 1213478999999973 3 355899999999999988888887777789999998
Q ss_pred eCC-CCCCcCCCCCCCCceeEEEEEEcccccCCC-eEEEEEEeeec
Q 002002 660 DNG-RYKRDEAGKPGKDVRVGKIRVRLSTLDTNR-VYLNSYSLTVL 703 (983)
Q Consensus 660 D~d-~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~-~~~~~~~L~~~ 703 (983)
-.- .. .++.|+|-+.|.+.+|.-.. ....||+|...
T Consensus 343 gdygRm--------d~k~fmg~aqi~l~eL~ls~~~~igwyKlfgs 380 (405)
T KOG2060|consen 343 GDYGRM--------DHKSFMGVAQIMLDELNLSSSPVIGWYKLFGS 380 (405)
T ss_pred cccccc--------chHHHhhHHHHHhhhhccccccceeeeeccCC
Confidence 532 22 36789999999999998655 67899988754
No 252
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=96.37 E-value=0.0042 Score=67.42 Aligned_cols=118 Identities=18% Similarity=0.215 Sum_probs=89.9
Q ss_pred EEEEEEceeccccccccCCCCCCCCCcEEEEEEC-----CEEEEeeeecCCCCCeeceEEEEEEec---CC---------
Q 002002 589 LLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYG-----PKWVRTRTILDRFNPRWNEQYTWDVYD---PC--------- 651 (983)
Q Consensus 589 ~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~-----~~~~rT~~~~~t~nP~Wne~~~~~v~~---~~--------- 651 (983)
.|++.|+++.+++... + ....|-|+.+++- ....+|.++++|.+|.|+|.|.+.+.. .+
T Consensus 368 elel~ivrg~~~pvp~---g-p~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr 443 (523)
T KOG3837|consen 368 ELELAIVRGQKNPVPG---G-PMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKR 443 (523)
T ss_pred HhHHHHhhcccCCCCC---C-chhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHh
Confidence 5777888888886541 1 2234788888752 256799999999999999999999865 11
Q ss_pred CEEEEEEEeCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeeecC-CCCCccceEEEEEEEEE
Q 002002 652 TVLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLL-PGGAKKMGEIEIAVRFT 721 (983)
Q Consensus 652 ~~l~i~v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~-~~g~~~~G~l~l~~~f~ 721 (983)
.-+.|++|....+- ..|.++|.++|.|..|++.-.+...|+|++-+ .. .|.|++.+|..
T Consensus 444 ~g~kfeifhkggf~-------rSdkl~gt~nikle~Len~cei~e~~~l~DGRK~v----GGkLevKvRiR 503 (523)
T KOG3837|consen 444 LGKKFEIFHKGGFN-------RSDKLTGTGNIKLEILENMCEICEYLPLKDGRKAV----GGKLEVKVRIR 503 (523)
T ss_pred cCeeEEEeeccccc-------cccceeceeeeeehhhhcccchhhceecccccccc----CCeeEEEEEEe
Confidence 25899999987765 47999999999999998866666778887532 22 38899999886
No 253
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=95.79 E-value=0.078 Score=58.62 Aligned_cols=119 Identities=15% Similarity=0.181 Sum_probs=89.8
Q ss_pred EEEEEceeccccccccCCCCCCCCCcEEEEEECCEEEEeeeecCCCCCeeceEEEEEEe--------cCCCEEEEEEEeC
Q 002002 590 LEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILDRFNPRWNEQYTWDVY--------DPCTVLTIGVFDN 661 (983)
Q Consensus 590 L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~~~~rT~~~~~t~nP~Wne~~~~~v~--------~~~~~l~i~v~D~ 661 (983)
+.|.|++|+|.+.. -+..-.+.+++++....|..+..+-.|.||..+.|++. ...++|+++||--
T Consensus 2 ivl~i~egr~F~~~-------~~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~ 74 (340)
T PF12416_consen 2 IVLSILEGRNFPQR-------PRHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAV 74 (340)
T ss_pred EEEEEecccCCCCC-------CCccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEe
Confidence 56889999999643 23456788899999999999999999999999999984 2356999999998
Q ss_pred CCCCCcCCCCCCCCceeEEEEEEcccc---cCC--CeEEEEEEeeecCCCCCccceEEEEEEEEEe
Q 002002 662 GRYKRDEAGKPGKDVRVGKIRVRLSTL---DTN--RVYLNSYSLTVLLPGGAKKMGEIEIAVRFTC 722 (983)
Q Consensus 662 d~~~~~~~~~~~~d~~lG~~~i~l~~l---~~~--~~~~~~~~L~~~~~~g~~~~G~l~l~~~f~~ 722 (983)
|.... .-+.||.+.++|... ..+ ..-.+||+|...+.+-.+.+-+|.+.+....
T Consensus 75 ~~~~~-------~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~ 133 (340)
T PF12416_consen 75 DGSTG-------KRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIED 133 (340)
T ss_pred cCCCC-------cceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEEec
Confidence 83331 345899999999998 555 4557899999773322222456777766654
No 254
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=95.44 E-value=0.051 Score=64.55 Aligned_cols=112 Identities=23% Similarity=0.259 Sum_probs=80.3
Q ss_pred cEEEEEEEEeeCCCCCCCCCCCCeEEEEEECC-------eEEeeeCcC-CCCCCeeee-EEEEE-eeecCCCCCceEEEE
Q 002002 7 RKLIVEVCNAKNLMPKDGQGTASAYVIVDFDG-------QRRRTKTKF-RDLNPQWDE-RLEFL-VHDAESMPTEILEIN 76 (983)
Q Consensus 7 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-------~~~~T~~~~-~t~nP~WnE-~f~f~-v~~~~~l~~~~L~v~ 76 (983)
+.+.|+|+++.-|..++. .-||.|.+-| ..+||+++. |++||+|+| .|.|. |.-++ -..|.|.
T Consensus 703 ~t~sV~VISgqFLSdrkv----gtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpe---LA~lRia 775 (1189)
T KOG1265|consen 703 ATLSVTVISGQFLSDRKV----GTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPE---LASLRIA 775 (1189)
T ss_pred eeEEEEEEeeeecccccc----CceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccc---hhheeee
Confidence 678999999999987753 4799999855 457888876 579999996 56665 22332 4679999
Q ss_pred EEeCCCCCCCCCccEEEEEECccceecCCeeeEEEEceecCCcceeeeEEEEEEEEec
Q 002002 77 LYNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQIKGEIGLKVYYID 134 (983)
Q Consensus 77 V~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~s~~~G~l~l~i~~~~ 134 (983)
||++ ...|||+-.+|++.+. ...+.+-|...++.+-.--.|.+.+...+
T Consensus 776 vyeE-----ggK~ig~RIlpvd~l~----~GYrhv~LRse~Nqpl~lp~Lfv~i~~kd 824 (1189)
T KOG1265|consen 776 VYEE-----GGKFIGQRILPVDGLN----AGYRHVCLRSESNQPLTLPALFVYIVLKD 824 (1189)
T ss_pred eecc-----CCceeeeeccchhccc----CcceeEEecCCCCCccccceeEEEEEeec
Confidence 9953 3469999999999876 45666778777655433345555555443
No 255
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=95.27 E-value=0.083 Score=62.87 Aligned_cols=126 Identities=21% Similarity=0.305 Sum_probs=83.5
Q ss_pred cEEEEEEEceeccccccccCCCCCCCCCcEEEEEECC-------EEEEeeeecC-CCCCeece-EEEEEE-ecC-CCEEE
Q 002002 587 IGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP-------KWVRTRTILD-RFNPRWNE-QYTWDV-YDP-CTVLT 655 (983)
Q Consensus 587 ~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~-------~~~rT~~~~~-t~nP~Wne-~~~~~v-~~~-~~~l~ 655 (983)
.+.+.|+|++|.=|..+ +.-.||.|.+-+ +.+||+++.+ ++||+|+| .|.|.- .-| -..|+
T Consensus 702 A~t~sV~VISgqFLSdr--------kvgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lR 773 (1189)
T KOG1265|consen 702 AATLSVTVISGQFLSDR--------KVGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLR 773 (1189)
T ss_pred EeeEEEEEEeeeecccc--------ccCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhhee
Confidence 46899999999999543 233799998633 5679998875 55999997 577753 333 34899
Q ss_pred EEEEeCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeeecCCCCCccceEE--EEEEE-EEecChHHHHHHh
Q 002002 656 IGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLPGGAKKMGEI--EIAVR-FTCSSWLNLIQAY 732 (983)
Q Consensus 656 i~v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l--~l~~~-f~~~~~~~~~~~~ 732 (983)
|.||++.. .+||.-.+|+..|.+|.. ..-|......... .-.| .+.+. |.+..+.+++.+-
T Consensus 774 iavyeEgg------------K~ig~RIlpvd~l~~GYr---hv~LRse~Nqpl~-lp~Lfv~i~~kdyvpd~~~d~~~AL 837 (1189)
T KOG1265|consen 774 IAVYEEGG------------KFIGQRILPVDGLNAGYR---HVCLRSESNQPLT-LPALFVYIVLKDYVPDDLSDLVEAL 837 (1189)
T ss_pred eeeeccCC------------ceeeeeccchhcccCcce---eEEecCCCCCccc-cceeEEEEEeeccCCchhhhHHHHH
Confidence 99999642 599999999999999862 2335543211111 1222 22222 4445666777666
Q ss_pred cCCC
Q 002002 733 ATPM 736 (983)
Q Consensus 733 ~~p~ 736 (983)
.+|.
T Consensus 838 ~nPi 841 (1189)
T KOG1265|consen 838 ANPI 841 (1189)
T ss_pred hChH
Confidence 6664
No 256
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=94.71 E-value=0.074 Score=55.91 Aligned_cols=151 Identities=17% Similarity=0.158 Sum_probs=93.7
Q ss_pred CCcEEEEEEEceeccccccccCCCCCCCCCcEEEEEECC-EEEEeeeecCCCCCeeceEEEEEEecCCCEEEEEEEeCCC
Q 002002 585 SPIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP-KWVRTRTILDRFNPRWNEQYTWDVYDPCTVLTIGVFDNGR 663 (983)
Q Consensus 585 ~~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~-~~~rT~~~~~t~nP~Wne~~~~~v~~~~~~l~i~v~D~d~ 663 (983)
...|.|.++++.++||.-... .. +-+.+-||+++.+. ...||.+......=.|.|.|..++.. .+++.+-||.|+.
T Consensus 48 s~tGiL~~H~~~GRGLr~~p~-~k-glt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~-~~vl~~lvySW~p 124 (442)
T KOG1452|consen 48 SSTGILYFHAYNGRGLRMTPQ-QK-GLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVN-IEVLHYLVYSWPP 124 (442)
T ss_pred cccceEEEEEecccccccChh-cc-CceeeeeeeeeecccCccccccccCCCCccchhhceeeccc-ceeeeEEEeecCc
Confidence 457999999999999953321 11 33568999999874 45566665555555899999998864 4588899999886
Q ss_pred CCCcCCCCCCCCce--eEEEEEEcccccCCCeEEEEEEeeecCCCCCccceEEEEEEEEEecChHHHHHHhcCCCCCccc
Q 002002 664 YKRDEAGKPGKDVR--VGKIRVRLSTLDTNRVYLNSYSLTVLLPGGAKKMGEIEIAVRFTCSSWLNLIQAYATPMLPRMH 741 (983)
Q Consensus 664 ~~~~~~~~~~~d~~--lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~f~~~~~~~~~~~~~~p~~p~~h 741 (983)
-. ++.+ .| .+.+..+.... -.+-+.|.. .++|.+.+.+.|+ +..+.|-+..+|++.
T Consensus 125 q~--------RHKLC~~g--~l~~~~v~rqs-pd~~~Al~l------ePrgq~~~r~~~~-----Dp~av~rR~~~Prlr 182 (442)
T KOG1452|consen 125 QR--------RHKLCHLG--LLEAFVVDRQS-PDRVVALYL------EPRGQPPLRLPLA-----DPEAVTRRTVNPRLR 182 (442)
T ss_pred hh--------hccccccc--hhhhhhhhhcC-Ccceeeeec------ccCCCCceecccC-----ChHHHhhcccCcccc
Confidence 44 3332 34 22222221111 122233332 3468999998886 677777766666532
Q ss_pred ccCCCChhhHHHHHHHHHHHHHHHhhcCCC
Q 002002 742 YVRPLGPAQQDILRHTAMRIVTARLARSEP 771 (983)
Q Consensus 742 y~~p~~~~q~~~l~~~a~~~v~~~l~~~~p 771 (983)
.+.+.....+..|..++.|
T Consensus 183 -----------gvfG~~L~~lV~RE~~~~P 201 (442)
T KOG1452|consen 183 -----------GVFGISLSRLVQREPESPP 201 (442)
T ss_pred -----------cccchhhHhHhhcCCCCCc
Confidence 1234445566667666666
No 257
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=94.56 E-value=0.46 Score=46.81 Aligned_cols=106 Identities=18% Similarity=0.268 Sum_probs=73.0
Q ss_pred CEEEEEEEEeecCCCCCCCCcEEEEEE--cCee----eeeeec-CC-CccceEEEEeec--CC-CCCeEEEEEEcCCcCC
Q 002002 273 PFLYVRVLKAKRAGNVSNGSLYAKLVI--GTHS----IKTKSQ-AD-KDWDQVFAFDKE--GL-NSTSLEVSVWSEEKKE 341 (983)
Q Consensus 273 ~~L~V~v~~a~~L~~~~~~dPyv~v~~--~~~~----~kTk~~-~~-P~Wne~f~f~~~--~~-~~~~l~v~V~d~d~~~ 341 (983)
.-++|+|+.+.++.....+|-||++.+ |++. ..|+.+ .. +.|||.+.|++. ++ .+..|.|+||+.....
T Consensus 8 ~~~~v~i~~~~~~~~~~~~~l~V~v~l~~g~~~L~~pv~T~~v~~~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~~~~ 87 (158)
T cd08398 8 SNLRIKILCATYVNVNDIDKIYVRTGIYHGGEPLCDNVNTQRVPCSNPRWNEWLDYDIYIPDLPRSARLCLSICSVKGRK 87 (158)
T ss_pred CCeEEEEEeeccCCCCCcCeEEEEEEEEECCEEccCeeEecccCCCCCccceeEEcccchhcCChhheEEEEEEEEeccc
Confidence 358899999999887677788988854 6653 245544 45 999999999863 43 3778999999975210
Q ss_pred ccccCCceeEEEEEeccccCCCCCCCCCCCCceEEcccCCCCCceEEEEEEeccC
Q 002002 342 NEECTENCLGTVLFDLQEVPKRVPPDSPLAPQWYSLESEKLPGNDVMLAVWIGTQ 396 (983)
Q Consensus 342 ~d~~~d~~lG~~~i~l~~l~~~~~~~~~l~~~w~~L~~~~~~~g~i~l~~~~g~~ 396 (983)
........+|.+.+.|-+-. + .| .+|...+.+|.+..
T Consensus 88 ~~k~~~~~iG~~ni~LFd~~-~-----~L------------r~G~~~L~lW~~~~ 124 (158)
T cd08398 88 GAKEEHCPLAWGNINLFDYT-D-----TL------------VSGKMALNLWPVPH 124 (158)
T ss_pred CCCCceEEEEEEEEEEECCC-C-----hh------------hCCCEEEEEEcCCc
Confidence 00012356999999987621 1 11 46999999997543
No 258
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=94.42 E-value=0.22 Score=48.96 Aligned_cols=90 Identities=19% Similarity=0.200 Sum_probs=61.2
Q ss_pred CcEEEEEEEEeeCCCCCCCCCCCCeEEEEEE--CCeE----EeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEe
Q 002002 6 NRKLIVEVCNAKNLMPKDGQGTASAYVIVDF--DGQR----RRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYN 79 (983)
Q Consensus 6 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~--~~~~----~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~ 79 (983)
...++|+|++++++.-.+ .++-||++.+ +++. ..|+.+.. .++.|||...|.+.-.+--....|.|.||+
T Consensus 7 ~~~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~ 82 (158)
T cd08398 7 NSNLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICS 82 (158)
T ss_pred CCCeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEE
Confidence 457899999999988653 4688888876 4432 23444443 679999999998765322236789999997
Q ss_pred CCCCC---CCCCccEEEEEECcc
Q 002002 80 DKKTG---KRSTFLGKVKIAGST 99 (983)
Q Consensus 80 ~~~~~---~~d~~lG~~~i~l~~ 99 (983)
..... .....+|.+.++|-+
T Consensus 83 ~~~~~~~k~~~~~iG~~ni~LFd 105 (158)
T cd08398 83 VKGRKGAKEEHCPLAWGNINLFD 105 (158)
T ss_pred EecccCCCCceEEEEEEEEEEEC
Confidence 54321 012468888888665
No 259
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=93.90 E-value=0.33 Score=48.67 Aligned_cols=74 Identities=20% Similarity=0.294 Sum_probs=51.6
Q ss_pred CcEEEEEEEEeeCCCCCCCCCCCCeEEEEEE--CCe----EEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEe
Q 002002 6 NRKLIVEVCNAKNLMPKDGQGTASAYVIVDF--DGQ----RRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYN 79 (983)
Q Consensus 6 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~--~~~----~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~ 79 (983)
...++|+|+.+.+|..+ ....+-||.+.+ |++ ...|+.+.-..++.|||.+.|.+.-.+--....|.|.||+
T Consensus 7 ~~~f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~ 84 (173)
T cd08693 7 EEKFSITLHKISNLNAA--ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYE 84 (173)
T ss_pred CCCEEEEEEEeccCccC--CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEE
Confidence 45789999999999862 234677887765 443 3355555545679999999998754322236689999997
Q ss_pred CC
Q 002002 80 DK 81 (983)
Q Consensus 80 ~~ 81 (983)
..
T Consensus 85 ~~ 86 (173)
T cd08693 85 VS 86 (173)
T ss_pred ec
Confidence 54
No 260
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=92.77 E-value=1.3 Score=38.60 Aligned_cols=84 Identities=14% Similarity=0.167 Sum_probs=57.5
Q ss_pred CCCeEEEEEECC-eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCCCCCCccEEEEEECccceecCC
Q 002002 27 TASAYVIVDFDG-QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKTGKRSTFLGKVKIAGSTFAKVGS 105 (983)
Q Consensus 27 ~~dPyv~v~~~~-~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~~~d~~lG~~~i~l~~l~~~~~ 105 (983)
.++-.+++.+++ ...+|.-+. -.+..|++.|.+.+.- +..|+|.||-.| . ..+.|-..+-|.+..
T Consensus 8 ~~eV~avLklDn~~VgqT~Wk~-~s~q~WDQ~Fti~LdR-----sRELEI~VywrD-~---RslCav~~lrLEd~~---- 73 (98)
T cd08687 8 CSEVSAVLKLDNTVVGQTQWKP-KSNQAWDQSFTLELER-----SRELEIAVYWRD-W---RSLCAVKFLKLEDER---- 73 (98)
T ss_pred ccceEEEEEEcCeEEeeccccc-cccccccceeEEEeec-----ccEEEEEEEEec-c---hhhhhheeeEhhhhc----
Confidence 478899999988 667776654 3688999999999954 689999998533 2 235666666666632
Q ss_pred eeeEEEEceecCCcceeeeEEEEEEEE
Q 002002 106 ESSVYYPLEKRSVFSQIKGEIGLKVYY 132 (983)
Q Consensus 106 ~~~~w~~L~~~~~~s~~~G~l~l~i~~ 132 (983)
...-.+|++ +|.+...++|
T Consensus 74 -~~~~~~lep-------qg~l~~ev~f 92 (98)
T cd08687 74 -HEVQLDMEP-------QLCLVAELTF 92 (98)
T ss_pred -ccceecccc-------ccEEEEEEEe
Confidence 122334443 4888777766
No 261
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=92.74 E-value=0.2 Score=52.75 Aligned_cols=115 Identities=20% Similarity=0.263 Sum_probs=73.3
Q ss_pred CCcEEEEEEEEeeCCCCCCC--CCCCCeEEEEEECC-eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCC
Q 002002 5 CNRKLIVEVCNAKNLMPKDG--QGTASAYVIVDFDG-QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDK 81 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~--~g~~dPyv~v~~~~-~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~ 81 (983)
.++.|.+++..+++|.-... +-+.+-||++.++. ++.||.+.....-=.|.|+|...+.+. ..+.+-||.++
T Consensus 49 ~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~~-----~vl~~lvySW~ 123 (442)
T KOG1452|consen 49 STGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVNI-----EVLHYLVYSWP 123 (442)
T ss_pred ccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeecccc-----eeeeEEEeecC
Confidence 45789999999999985432 44678999999988 566777766666667999999988763 57777777654
Q ss_pred CCCCCCCc--cEEEEEECccceecCCeeeEEEEceecCCcceeeeEEEEEEEEec
Q 002002 82 KTGKRSTF--LGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQIKGEIGLKVYYID 134 (983)
Q Consensus 82 ~~~~~d~~--lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~s~~~G~l~l~i~~~~ 134 (983)
.-. +.++ +| -+.+..+.+.+.....-+.|++ +|.+-+++-+.+
T Consensus 124 pq~-RHKLC~~g--~l~~~~v~rqspd~~~Al~leP-------rgq~~~r~~~~D 168 (442)
T KOG1452|consen 124 PQR-RHKLCHLG--LLEAFVVDRQSPDRVVALYLEP-------RGQPPLRLPLAD 168 (442)
T ss_pred chh-hccccccc--hhhhhhhhhcCCcceeeeeccc-------CCCCceecccCC
Confidence 432 3333 44 2333333222222222233443 488888876553
No 262
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=92.30 E-value=0.67 Score=45.75 Aligned_cols=94 Identities=22% Similarity=0.298 Sum_probs=61.5
Q ss_pred CcEEEEEEEEeeCCCCCCCCCCCCeEEEEEE--CCe----EEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEe
Q 002002 6 NRKLIVEVCNAKNLMPKDGQGTASAYVIVDF--DGQ----RRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYN 79 (983)
Q Consensus 6 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~--~~~----~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~ 79 (983)
...++|+|....++...+ ....+-||.+.+ +++ ...|.......++.|||...|.+.-.+--....|.|.||+
T Consensus 7 ~~~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~ 85 (156)
T cd08380 7 NFNLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYA 85 (156)
T ss_pred CCCeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEE
Confidence 346788888888877621 234667777765 443 2234333334689999999998755322236689999997
Q ss_pred CCCCC-CCCCccEEEEEECccc
Q 002002 80 DKKTG-KRSTFLGKVKIAGSTF 100 (983)
Q Consensus 80 ~~~~~-~~d~~lG~~~i~l~~l 100 (983)
.+... ..+..||.+.+++=+.
T Consensus 86 ~~~~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 86 VSEPGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred EecCCCCcceEEEEEeEEeEcc
Confidence 55432 1457899999987663
No 263
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=92.06 E-value=5.2 Score=38.62 Aligned_cols=113 Identities=19% Similarity=0.279 Sum_probs=74.6
Q ss_pred EEEEEEceeccccccccCCCCCCCCCcEEEEEECCEE---EEeeee-cCCCCCeeceEEEEEEe---cC------CCEEE
Q 002002 589 LLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKW---VRTRTI-LDRFNPRWNEQYTWDVY---DP------CTVLT 655 (983)
Q Consensus 589 ~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~~~---~rT~~~-~~t~nP~Wne~~~~~v~---~~------~~~l~ 655 (983)
.+.+.|++..+++. ....-|+..+.++.. ..|... ..+..-.||+.|.+++. +. ...++
T Consensus 8 ~~~l~i~~l~~~p~--------~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~ 79 (143)
T PF10358_consen 8 QFDLTIHELENLPS--------SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELK 79 (143)
T ss_pred EEEEEEEEeECcCC--------CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEE
Confidence 56788888888853 123456666666542 444433 34567899999998873 11 12688
Q ss_pred EEEEeCCCCCCcCCCCCCCCceeEEEEEEcccccCC--CeEEEEEEeeecCCCCCccceEEEEEEEEE
Q 002002 656 IGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTN--RVYLNSYSLTVLLPGGAKKMGEIEIAVRFT 721 (983)
Q Consensus 656 i~v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~--~~~~~~~~L~~~~~~g~~~~G~l~l~~~f~ 721 (983)
|.|+.....+ +...||++.|+|++..+. ......++|... .+....|++.+.+.
T Consensus 80 ~~v~~~~~~~--------~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~----~~~~a~L~isi~~~ 135 (143)
T PF10358_consen 80 FSVFEVDGSG--------KKKVLGKVSINLAEYANEDEEPITVRLLLKKC----KKSNATLSISISLS 135 (143)
T ss_pred EEEEEecCCC--------ccceEEEEEEEHHHhhCcCCCcEEEEEeCccC----CCCCcEEEEEEEEE
Confidence 9999875433 225899999999998763 455667777643 12346788887775
No 264
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=92.00 E-value=3.6 Score=39.77 Aligned_cols=122 Identities=16% Similarity=0.260 Sum_probs=79.2
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEECCeE---EeeeCcC-CCCCCeeeeEEEEEeeec-----CCCCCceEEE
Q 002002 5 CNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQR---RRTKTKF-RDLNPQWDERLEFLVHDA-----ESMPTEILEI 75 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~---~~T~~~~-~t~nP~WnE~f~f~v~~~-----~~l~~~~L~v 75 (983)
....+.|.|.+..+++. ....-||...-++.. ..|.... .+-.-.|||.|.+.+.-. ..+....+.|
T Consensus 5 ~kf~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~ 80 (143)
T PF10358_consen 5 VKFQFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKF 80 (143)
T ss_pred eeEEEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEE
Confidence 45678899999998876 233455555555532 3444333 344568999998876431 1256778999
Q ss_pred EEEeCCCCCCCCCccEEEEEECccceecC-CeeeEEEEceecCCcceeeeEEEEEEEEec
Q 002002 76 NLYNDKKTGKRSTFLGKVKIAGSTFAKVG-SESSVYYPLEKRSVFSQIKGEIGLKVYYID 134 (983)
Q Consensus 76 ~V~~~~~~~~~d~~lG~~~i~l~~l~~~~-~~~~~w~~L~~~~~~s~~~G~l~l~i~~~~ 134 (983)
.|+.....+ +...+|.+.++|+++.... .....-++|.+.. .....|.+.+.+..
T Consensus 81 ~v~~~~~~~-~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~~---~~~a~L~isi~~~~ 136 (143)
T PF10358_consen 81 SVFEVDGSG-KKKVLGKVSINLAEYANEDEEPITVRLLLKKCK---KSNATLSISISLSE 136 (143)
T ss_pred EEEEecCCC-ccceEEEEEEEHHHhhCcCCCcEEEEEeCccCC---CCCcEEEEEEEEEE
Confidence 998654332 2369999999999998542 4555667887662 23466777776653
No 265
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=91.77 E-value=0.04 Score=65.49 Aligned_cols=197 Identities=19% Similarity=0.248 Sum_probs=119.3
Q ss_pred CcEEEEEEEceeccccccccCCCCCCCCCcEEEEEE---C--CEEEEeeeecCCCCCeeceEEEEEEecCCCEEEEEEEe
Q 002002 586 PIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKY---G--PKWVRTRTILDRFNPRWNEQYTWDVYDPCTVLTIGVFD 660 (983)
Q Consensus 586 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~---~--~~~~rT~~~~~t~nP~Wne~~~~~v~~~~~~l~i~v~D 660 (983)
..|.+.+.+++|.+|. ....-||...+ | ....+|+++.+|..|.||+++++++.. .+..+|.+++
T Consensus 757 ~ygflh~~vhsat~lk---------qs~~lY~Td~v~e~~~~~s~~st~~iadT~~~~~npe~hv~~~~-sqS~r~~~~e 826 (1112)
T KOG4269|consen 757 LYGFLHVIVHSATGLK---------QSRNLYCTDEVDEFGYFVSKASTRVIADTAEPQWNPEKHVPVIE-SQSSRLEKTE 826 (1112)
T ss_pred cccceeeeeccccccc---------cccceeeehhhhhhccccccccceeeecccCCCCChhcccchhh-ccccchhhhc
Confidence 4789999999999993 33567887764 3 367799999999999999999999854 4456688887
Q ss_pred CCCCCCcCC--CCCCCCceeEEEEEEcccccCCCeEEEEEEeeecCCCCCccceEEEEEEEEEecChHHHHHHhcCCCC-
Q 002002 661 NGRYKRDEA--GKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLPGGAKKMGEIEIAVRFTCSSWLNLIQAYATPML- 737 (983)
Q Consensus 661 ~d~~~~~~~--~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~f~~~~~~~~~~~~~~p~~- 737 (983)
.+.-..... -.-..+...|+.++.+.--.... ..||.-. -...| -.++..+.|+..+.-.. ..|..
T Consensus 827 k~~~~~k~~~~~~~~~~~~~~~~~~~l~~~~~~d--~d~~t~v-~~~n~----~~ve~~v~~ssss~Ss~----~~~~~~ 895 (1112)
T KOG4269|consen 827 KSTPVEKLIDSHSQNSQNEEKRSRMKLDPQPHHD--ADWYTQV-IDMNG----IVVETSVKFSSSSTSSK----RKPSVK 895 (1112)
T ss_pred ccchHHHhhhccchhhcccccccccccCcccccc--ccCccCh-hhhcC----cceeeeEEecccccccc----CCCcce
Confidence 765321000 00023445666555544322211 2333211 11122 34667777764321100 01100
Q ss_pred CcccccCCCChhhHHHHHHHHHHHHHHHhhcCCCCChHHHHHhhcCCCcceeehhhhhHHHHHHHHHHHHHHHHHHHhhc
Q 002002 738 PRMHYVRPLGPAQQDILRHTAMRIVTARLARSEPPLGQEVVQFMLDTDTHVWSMRRSKANWFRVVGCLTRAATLARWLDG 817 (983)
Q Consensus 738 p~~hy~~p~~~~q~~~l~~~a~~~v~~~l~~~~p~l~~~vv~~~~d~~~~~~s~~~~~~n~~R~~~~~~~~~~~~~~~~~ 817 (983)
-..-|-.|+ ..++.++..|--..-|.+...|++|+.. .++.-...|+||.+....+.++.+.|+.
T Consensus 896 qTgIFG~~~---------~~kisv~t~~n~s~lP~VVyrCvEyle~------~RgieEeGIyRlSGsaT~Ik~Lke~Fd~ 960 (1112)
T KOG4269|consen 896 QTGIFGLPL---------NVKISVVTKRNVSGLPYVVYRCVEYLES------CRGIEEEGIYRLSGSATDIKALKEQFDE 960 (1112)
T ss_pred eceeccccc---------eeeEeeeeeecccCCchHHHHHHHHHHh------ccccchhceEEecccHHHHHHHHHHhcc
Confidence 000111111 1345556666666778888999999972 2345567999999999999999999876
Q ss_pred c
Q 002002 818 I 818 (983)
Q Consensus 818 ~ 818 (983)
-
T Consensus 961 ~ 961 (1112)
T KOG4269|consen 961 N 961 (1112)
T ss_pred c
Confidence 6
No 266
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=91.62 E-value=0.97 Score=45.36 Aligned_cols=93 Identities=17% Similarity=0.294 Sum_probs=60.1
Q ss_pred EEEEEEceeccccccccCCCCCCCCCcEEEEE--ECCEEE----EeeeecCCCCCeeceEEEEEEe--c--CCCEEEEEE
Q 002002 589 LLEVGIRGATNLLPVKTKDGTRGTTDAYVVAK--YGPKWV----RTRTILDRFNPRWNEQYTWDVY--D--PCTVLTIGV 658 (983)
Q Consensus 589 ~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~--~~~~~~----rT~~~~~t~nP~Wne~~~~~v~--~--~~~~l~i~v 658 (983)
.++|+|+.+.+|... ....+-|+.+. .|++.+ .|+.+.-+.++.|||.++|++. + ....|.|+|
T Consensus 9 ~f~i~i~~~~~~~~~------~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti 82 (173)
T cd08693 9 KFSITLHKISNLNAA------ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAI 82 (173)
T ss_pred CEEEEEEEeccCccC------CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEE
Confidence 588999999999541 23466777764 466543 5554444567999999999774 2 245899999
Q ss_pred EeCCCCCCcC--------CCCCCCCceeEEEEEEccc
Q 002002 659 FDNGRYKRDE--------AGKPGKDVRVGKIRVRLST 687 (983)
Q Consensus 659 ~D~d~~~~~~--------~~~~~~d~~lG~~~i~l~~ 687 (983)
|+........ ......+..||.+.++|=+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd 119 (173)
T cd08693 83 YEVSKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFD 119 (173)
T ss_pred EEecccccccccccccccccccCcceEEEEEeEEEEc
Confidence 9976432100 0001235689999888755
No 267
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=91.48 E-value=0.73 Score=45.51 Aligned_cols=92 Identities=21% Similarity=0.296 Sum_probs=62.5
Q ss_pred CCCCeEEEEEE--CCe----EEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCCCCCCccEEEEEECcc
Q 002002 26 GTASAYVIVDF--DGQ----RRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKTGKRSTFLGKVKIAGST 99 (983)
Q Consensus 26 g~~dPyv~v~~--~~~----~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~~~d~~lG~~~i~l~~ 99 (983)
..++-||++.+ +++ ..+|+.+.-+..+.|||...|.+.-.+--....|.|.||+....+ ....+|.+.+++=+
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~-~~~~vg~~~~~lFd 106 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTG-KAVPFGGTTLSLFN 106 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCC-CceEEEEEEEeeEC
Confidence 45788888876 443 235555555677899999999986643334678999999865543 56789999988765
Q ss_pred ceecCCeeeEEEEceecCCcceeeeEEEEEEEEecC
Q 002002 100 FAKVGSESSVYYPLEKRSVFSQIKGEIGLKVYYIDE 135 (983)
Q Consensus 100 l~~~~~~~~~w~~L~~~~~~s~~~G~l~l~i~~~~~ 135 (983)
.. + .| -+|...+.++....
T Consensus 107 ~~--g-------~L--------r~G~~~l~lw~~~~ 125 (159)
T cd08397 107 KD--G-------TL--------RRGRQKLRVWPDVE 125 (159)
T ss_pred CC--C-------cE--------ecCCEEEEEEeCCC
Confidence 32 0 01 24888888865433
No 268
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=91.15 E-value=1.7 Score=37.89 Aligned_cols=86 Identities=14% Similarity=0.180 Sum_probs=57.5
Q ss_pred CCCCCcEEEEEECCEE-EEeeeecCCCCCeeceEEEEEEecCCCEEEEEEEeCCCCCCcCCCCCCCCceeEEEEEEcccc
Q 002002 610 RGTTDAYVVAKYGPKW-VRTRTILDRFNPRWNEQYTWDVYDPCTVLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTL 688 (983)
Q Consensus 610 ~g~sDpy~~~~~~~~~-~rT~~~~~t~nP~Wne~~~~~v~~~~~~l~i~v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l 688 (983)
.|.++-.|+++++|+. .+|.- +...+..|++.|++++ |.+..|+|+||=.|--+ +=|-.-++|.+.
T Consensus 6 ~~~~eV~avLklDn~~VgqT~W-k~~s~q~WDQ~Fti~L-dRsRELEI~VywrD~Rs-----------lCav~~lrLEd~ 72 (98)
T cd08687 6 MGCSEVSAVLKLDNTVVGQTQW-KPKSNQAWDQSFTLEL-ERSRELEIAVYWRDWRS-----------LCAVKFLKLEDE 72 (98)
T ss_pred ecccceEEEEEEcCeEEeeccc-cccccccccceeEEEe-ecccEEEEEEEEecchh-----------hhhheeeEhhhh
Confidence 3557889999999854 45543 3335789999999998 55779999998766422 445556667763
Q ss_pred cCCCeEEEEEEeeecCCCCCccceEEEEEEEE
Q 002002 689 DTNRVYLNSYSLTVLLPGGAKKMGEIEIAVRF 720 (983)
Q Consensus 689 ~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~f 720 (983)
..+ ...+| .+.|.|..+++|
T Consensus 73 ~~~----~~~~l--------epqg~l~~ev~f 92 (98)
T cd08687 73 RHE----VQLDM--------EPQLCLVAELTF 92 (98)
T ss_pred ccc----ceecc--------ccccEEEEEEEe
Confidence 221 12222 345888888877
No 269
>PF11696 DUF3292: Protein of unknown function (DUF3292); InterPro: IPR021709 This eukaryotic family of proteins has no known function.
Probab=90.93 E-value=0.58 Score=55.20 Aligned_cols=83 Identities=25% Similarity=0.359 Sum_probs=62.8
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHhhhccccChhhHHHHHHHHHHHHHHHhhhhhhhhhhheeeecccCCC
Q 002002 880 PSEVVRIRYDRLRALAGRAQTLLGDVAAQGERLEALFNWRDPRATWIFVVLCLVASLVFYAVPFKLFVLGSGFYYLRHPR 959 (983)
Q Consensus 880 ~~~~~~~r~~~l~~~~~~vQ~~~~~~a~~~Er~~~l~~w~~p~~t~~~~~~~~~~~~~l~~vp~r~~~~~~g~~~~r~p~ 959 (983)
+++.||..++|+.... +=-++.+.-.|.-|-+|++|+-|+.||++-++|.++=+++|.-+.+|+ +.+.+|.
T Consensus 89 spdkLRa~lERlY~tv------~v~~~~~~khi~RLrSW~eprRT~~fc~vYf~aW~~dll~p~~~~~L~---~li~~P~ 159 (642)
T PF11696_consen 89 SPDKLRANLERLYMTV------VVGLAAFIKHIARLRSWREPRRTAAFCAVYFIAWLLDLLVPAFFAFLI---ALILSPP 159 (642)
T ss_pred ChHHHHHHhHhheeeh------HHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhcCcc
Confidence 3567888888887622 223556667777899999999999999999999999999998777776 4556777
Q ss_pred CCCC-CCCchhhh
Q 002002 960 FRGD-MPSVPVNF 971 (983)
Q Consensus 960 ~~~~-~p~~~~~f 971 (983)
.|.- .|+.+...
T Consensus 160 ~r~~lFPpap~al 172 (642)
T PF11696_consen 160 ARSILFPPAPPAL 172 (642)
T ss_pred cccccCCCCCccc
Confidence 7764 56555443
No 270
>cd01459 vWA_copine_like VWA Copine: Copines are phospholipid-binding proteins originally identified in paramecium. They are found in human and orthologues have been found in C. elegans and Arabidopsis Thaliana. None have been found in D. Melanogaster or S. Cereviciae. Phylogenetic distribution suggests that copines have been lost in some eukaryotes. No functional properties have been assigned to the VWA domains present in copines. The members of this subgroup contain a functional MIDAS motif based on their preferential binding to magnesium and manganese. However, the MIDAS motif is not totally conserved, in most cases the MIDAS consists of the sequence DxTxS instead of the motif DxSxS that is found in most cases. The C2 domains present in copines mediate phospholipid binding.
Probab=90.92 E-value=0.29 Score=52.18 Aligned_cols=43 Identities=16% Similarity=0.234 Sum_probs=34.5
Q ss_pred HHHHHhcCCCCC-cccccCCCChhhHHHHHHHHHHHHHHHhhcCCCCChHHHHHhhcCCCcce
Q 002002 727 NLIQAYATPMLP-RMHYVRPLGPAQQDILRHTAMRIVTARLARSEPPLGQEVVQFMLDTDTHV 788 (983)
Q Consensus 727 ~~~~~~~~p~~p-~~hy~~p~~~~q~~~l~~~a~~~v~~~l~~~~p~l~~~vv~~~~d~~~~~ 788 (983)
|+.++|+.|..| ++||.+|-.+|+| ++|+ +.|++.++.||.++
T Consensus 39 DfT~SNg~p~~~~SLHy~~~~~~N~Y----q~aI---------------~~vg~il~~yD~D~ 82 (254)
T cd01459 39 DFTKSNGWPGEKRSLHYISPGRLNPY----QKAI---------------RIVGEVLQPYDSDK 82 (254)
T ss_pred EeCCCCCCCCCCCCcccCCCCCccHH----HHHH---------------HHHHHHHHhcCCCC
Confidence 555899999999 9999999989999 6677 45677777777554
No 271
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=90.55 E-value=0.95 Score=45.41 Aligned_cols=94 Identities=21% Similarity=0.214 Sum_probs=62.4
Q ss_pred CcEEEEEEEEeeCCCCCCCCCCCCeEEEEEE--CCeE----EeeeCcC--C--CCCCeeeeEEEEEeeecCCCCCceEEE
Q 002002 6 NRKLIVEVCNAKNLMPKDGQGTASAYVIVDF--DGQR----RRTKTKF--R--DLNPQWDERLEFLVHDAESMPTEILEI 75 (983)
Q Consensus 6 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~--~~~~----~~T~~~~--~--t~nP~WnE~f~f~v~~~~~l~~~~L~v 75 (983)
...+.|+|.++++++........|-||.+.+ +++. ..|+... + ...+.|||...|.+.-.+--....|.|
T Consensus 7 ~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~i 86 (171)
T cd04012 7 TDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVL 86 (171)
T ss_pred cccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEE
Confidence 4568899999999998776556788888876 4432 2343221 1 235779999999885432223568999
Q ss_pred EEEeCCCCCC--------CCCccEEEEEECcc
Q 002002 76 NLYNDKKTGK--------RSTFLGKVKIAGST 99 (983)
Q Consensus 76 ~V~~~~~~~~--------~d~~lG~~~i~l~~ 99 (983)
.+|+...... .+..||.+.++|=+
T Consensus 87 tl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd 118 (171)
T cd04012 87 TLYGTTSSPDGGSNKQRMGPEELGWVSLPLFD 118 (171)
T ss_pred EEEEEecCCccccccccccceEEEEEeEeeEc
Confidence 9997543320 24578888877655
No 272
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=90.34 E-value=3.1 Score=40.53 Aligned_cols=125 Identities=11% Similarity=0.174 Sum_probs=78.1
Q ss_pred EEEEEEEceecccccccc-CCCCCCCCCcEEEEEECCEEEEeeeecCCCCCeeceEEEEEEec--------------CCC
Q 002002 588 GLLEVGIRGATNLLPVKT-KDGTRGTTDAYVVAKYGPKWVRTRTILDRFNPRWNEQYTWDVYD--------------PCT 652 (983)
Q Consensus 588 g~L~v~v~~a~~L~~~~~-~d~~~g~sDpy~~~~~~~~~~rT~~~~~t~nP~Wne~~~~~v~~--------------~~~ 652 (983)
-.|+|+|++++-....-. .++ ...+--++-+.+++++++|+.+.-+.+|.++|.|-|++.. .++
T Consensus 9 ~yL~l~vlgGkAFld~l~~~~~-~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~ 87 (156)
T PF15627_consen 9 RYLHLRVLGGKAFLDHLQEPEG-QVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSISD 87 (156)
T ss_pred eEEEEEEeCchhHhhhhhccCC-CCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCCC
Confidence 356677776665431100 001 2233334455678999999999999999999999999853 245
Q ss_pred EEEEEEEeCCCCCCcCCCCCCCCceeEEEEEEcccccC-CC-eEEEEEEeeecCCCCCccceEEEEEEEEE
Q 002002 653 VLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDT-NR-VYLNSYSLTVLLPGGAKKMGEIEIAVRFT 721 (983)
Q Consensus 653 ~l~i~v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~-~~-~~~~~~~L~~~~~~g~~~~G~l~l~~~f~ 721 (983)
.|++.|.-.|..+ .-.++|.-.+.=..+.. +. .......|........-..|.|++.+...
T Consensus 88 pihivli~~d~~~--------~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lELl 150 (156)
T PF15627_consen 88 PIHIVLIRTDPSG--------ETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVGPESKVPVGILDLRLELL 150 (156)
T ss_pred ceEEEEEEecCCC--------ceEeeeeceehHHHHhccCCCccceeEEEeccCCCCccceeEEEEEEEee
Confidence 7888888877765 33688887776655432 22 11233445554333222468888887653
No 273
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=89.47 E-value=3.5 Score=41.35 Aligned_cols=75 Identities=21% Similarity=0.306 Sum_probs=48.7
Q ss_pred CcEEEEEEEEeeCCCCCCCCCCCCeEEEEEE--CCe---EEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeC
Q 002002 6 NRKLIVEVCNAKNLMPKDGQGTASAYVIVDF--DGQ---RRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYND 80 (983)
Q Consensus 6 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~--~~~---~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~ 80 (983)
...++|+|.++.++... ......-||++.+ +++ ..+|+.+.-+.++.|||.+.|.+.-.+--....|.|.||+.
T Consensus 9 ~~~friki~~~~~~~~~-~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~ 87 (178)
T cd08399 9 DRKFRVKILGIDIPVLP-RNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCG 87 (178)
T ss_pred CCCEEEEEEeecccCcC-CCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEE
Confidence 34678888888744332 2223345666654 443 23566666677899999999988654323467899999975
Q ss_pred C
Q 002002 81 K 81 (983)
Q Consensus 81 ~ 81 (983)
.
T Consensus 88 ~ 88 (178)
T cd08399 88 K 88 (178)
T ss_pred e
Confidence 3
No 274
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=89.27 E-value=1.4 Score=43.42 Aligned_cols=70 Identities=24% Similarity=0.264 Sum_probs=49.7
Q ss_pred CCCCCcEEEEEE--CCEE----EEeeeecCCCCCeeceEEEEEEe--c--CCCEEEEEEEeCCCCCCcCCCCCCCCceeE
Q 002002 610 RGTTDAYVVAKY--GPKW----VRTRTILDRFNPRWNEQYTWDVY--D--PCTVLTIGVFDNGRYKRDEAGKPGKDVRVG 679 (983)
Q Consensus 610 ~g~sDpy~~~~~--~~~~----~rT~~~~~t~nP~Wne~~~~~v~--~--~~~~l~i~v~D~d~~~~~~~~~~~~d~~lG 679 (983)
...+|-||.+.+ |++. ++|+.+.-+..+.|||-.+|++. + ....|.|+|||.+..+ +...||
T Consensus 27 ~~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~--------~~~~vg 98 (159)
T cd08397 27 SPNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTG--------KAVPFG 98 (159)
T ss_pred CCCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCC--------CceEEE
Confidence 345677887754 5543 35555555567899999999874 2 2458999999987544 466899
Q ss_pred EEEEEccc
Q 002002 680 KIRVRLST 687 (983)
Q Consensus 680 ~~~i~l~~ 687 (983)
.+.++|=+
T Consensus 99 ~~~~~lFd 106 (159)
T cd08397 99 GTTLSLFN 106 (159)
T ss_pred EEEEeeEC
Confidence 99998765
No 275
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=87.78 E-value=8.1 Score=39.08 Aligned_cols=57 Identities=12% Similarity=0.269 Sum_probs=40.2
Q ss_pred EEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCCCC-CCccEEEEEEC
Q 002002 40 RRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKTGKR-STFLGKVKIAG 97 (983)
Q Consensus 40 ~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~~~-d~~lG~~~i~l 97 (983)
.++|.+...+.+|.|+|++.+.+.. +......|.|..++....... ...+|-+.+||
T Consensus 54 e~~S~V~yH~~~P~W~EtiKi~lP~-~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL 111 (189)
T cd08695 54 EYRSFVLYHNNSPRWNETIKLPIPI-DKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPL 111 (189)
T ss_pred eEEEEEEEcCCCCCCceeEEEecCh-hhCCCeeEEEEEEEeeeccCCCCCceEEEEEee
Confidence 5788899999999999999999865 345577898988763211111 14566666665
No 276
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=87.15 E-value=3.4 Score=44.49 Aligned_cols=108 Identities=13% Similarity=0.220 Sum_probs=82.2
Q ss_pred CEEEEEEEEeecCCCCCCCCcEEEEEEcCeeeeeeec--CC---CccceEEEEeecCCCCCeEEEEEEcCCcCCccccCC
Q 002002 273 PFLYVRVLKAKRAGNVSNGSLYAKLVIGTHSIKTKSQ--AD---KDWDQVFAFDKEGLNSTSLEVSVWSEEKKENEECTE 347 (983)
Q Consensus 273 ~~L~V~v~~a~~L~~~~~~dPyv~v~~~~~~~kTk~~--~~---P~Wne~f~f~~~~~~~~~l~v~V~d~d~~~~d~~~d 347 (983)
-+|-|.|.+-.++. -...-|+++..|....+|..+ +. -.-.|.....+... ...|.|.|+-.. +.+.
T Consensus 58 F~LLVeI~EI~~i~--k~khiyIef~~Gr~d~TT~~IpTsKK~RI~IqqRV~IkIRQc-DnTLkI~lfKKk-----Lvkk 129 (508)
T PTZ00447 58 FYLLVKINEIFNIN--KYKHIYIIFSTDKYDFTTDEIPTNKKNRIHIDQRVDIKIRQC-DETLRVDLFTTK-----LTKK 129 (508)
T ss_pred eeEEEEehhhhccc--cceeEEEEEEcCceEEEccccccCcCceEEEeeeeeeeeeec-CceEEEEEEecc-----ccce
Confidence 35888888877743 445779999999999999766 22 44555666666555 788999999864 7799
Q ss_pred ceeEEEEEecc-ccCCCCCCCCCCCCceEEcccCCCCCceEEEEEE
Q 002002 348 NCLGTVLFDLQ-EVPKRVPPDSPLAPQWYSLESEKLPGNDVMLAVW 392 (983)
Q Consensus 348 ~~lG~~~i~l~-~l~~~~~~~~~l~~~w~~L~~~~~~~g~i~l~~~ 392 (983)
..||.+.+++. ++..+.-| ..+||.+...|+..+.|.|+.+
T Consensus 130 ~hIgdI~InIn~dIIdk~FP----KnkWy~c~kDGq~~cRIqLSFh 171 (508)
T PTZ00447 130 VHIGQIKIDINASVISKSFP----KNEWFVCFKDGQEICKVQMSFY 171 (508)
T ss_pred eEEEEEEecccHHHHhccCC----ccceEEEecCCceeeeEEEEeh
Confidence 99999999996 55544443 3699999888888899999884
No 277
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=86.99 E-value=3.1 Score=41.02 Aligned_cols=88 Identities=24% Similarity=0.330 Sum_probs=57.0
Q ss_pred EEEEEEceeccccccccCCCCCCCCCcEEEEE--ECCEEE----EeeeecCCCCCeeceEEEEEEe--c--CCCEEEEEE
Q 002002 589 LLEVGIRGATNLLPVKTKDGTRGTTDAYVVAK--YGPKWV----RTRTILDRFNPRWNEQYTWDVY--D--PCTVLTIGV 658 (983)
Q Consensus 589 ~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~--~~~~~~----rT~~~~~t~nP~Wne~~~~~v~--~--~~~~l~i~v 658 (983)
.++|+|....++...+ ....+-|+.+. .|++.. .|.....+.++.|||.++|++. + ....|.|++
T Consensus 9 ~~~i~i~~~~~~~~~~-----~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl 83 (156)
T cd08380 9 NLRIKIHGITNINLLD-----SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSI 83 (156)
T ss_pred CeEEEEEeeccccccC-----CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEE
Confidence 4667777777775411 23456677664 355422 3433333368999999999864 2 245899999
Q ss_pred EeCCCCCCcCCCCCCCCceeEEEEEEccc
Q 002002 659 FDNGRYKRDEAGKPGKDVRVGKIRVRLST 687 (983)
Q Consensus 659 ~D~d~~~~~~~~~~~~d~~lG~~~i~l~~ 687 (983)
|+.+..+. .++..||.+.++|=+
T Consensus 84 ~~~~~~~~------~~~~~iG~~~~~lFd 106 (156)
T cd08380 84 YAVSEPGS------KKEVPLGWVNVPLFD 106 (156)
T ss_pred EEEecCCC------CcceEEEEEeEEeEc
Confidence 99775430 135789999998865
No 278
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=85.24 E-value=4.9 Score=36.28 Aligned_cols=75 Identities=20% Similarity=0.275 Sum_probs=49.9
Q ss_pred cEEEEEEEEeeCCCCCCCCCCCCeEEEEEE--CCe----EEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeC
Q 002002 7 RKLIVEVCNAKNLMPKDGQGTASAYVIVDF--DGQ----RRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYND 80 (983)
Q Consensus 7 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~--~~~----~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~ 80 (983)
..+.+.+...++.........++-||++.+ +++ ...|+.+.-...+.|||...|.+.-.+--....|.|.+|+.
T Consensus 11 ~~~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~ 90 (100)
T smart00142 11 RNLVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEV 90 (100)
T ss_pred CceEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEe
Confidence 346677888887766544333588888876 443 23455554456689999999987553322366899999964
Q ss_pred C
Q 002002 81 K 81 (983)
Q Consensus 81 ~ 81 (983)
.
T Consensus 91 ~ 91 (100)
T smart00142 91 K 91 (100)
T ss_pred e
Confidence 3
No 279
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=83.17 E-value=10 Score=36.67 Aligned_cols=74 Identities=23% Similarity=0.268 Sum_probs=47.3
Q ss_pred eeeCcCCC-CCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCCCCC----CccEEEEEECccceecCCeeeEEEEceec
Q 002002 42 RTKTKFRD-LNPQWDERLEFLVHDAESMPTEILEINLYNDKKTGKRS----TFLGKVKIAGSTFAKVGSESSVYYPLEKR 116 (983)
Q Consensus 42 ~T~~~~~t-~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~~~d----~~lG~~~i~l~~l~~~~~~~~~w~~L~~~ 116 (983)
.|+...-+ .++.|||.+.|.+.-.+--....|.|.||..+... .. ..||.+.+++-+...
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~-~~~~~~~~lgw~n~~lFd~~~-------------- 87 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKK-KSKKKKVPLGWVNLPLFDYRG-------------- 87 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECST-TT--EEEEEEEEEEESB-TTS--------------
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCC-ccccceeEEEEEEEEeECCCC--------------
Confidence 56655555 79999999999975532223678999999755443 33 589999988776431
Q ss_pred CCcceeeeEEEEEEEEec
Q 002002 117 SVFSQIKGEIGLKVYYID 134 (983)
Q Consensus 117 ~~~s~~~G~l~l~i~~~~ 134 (983)
.-.+|...+.+ |..
T Consensus 88 ---~L~~G~~~L~l-W~~ 101 (142)
T PF00792_consen 88 ---QLRQGPQKLSL-WPD 101 (142)
T ss_dssp ---BBEEEEEEEE--EET
T ss_pred ---cccCCCEEEEE-EcC
Confidence 01258888888 443
No 280
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=82.85 E-value=10 Score=38.14 Aligned_cols=94 Identities=17% Similarity=0.157 Sum_probs=54.7
Q ss_pred EEEEEEceeccccccccCCCCCCCCCcEEEEE--ECCEE---EEeeeecCCCCCeeceEEEEEEe--c--CCCEEEEEEE
Q 002002 589 LLEVGIRGATNLLPVKTKDGTRGTTDAYVVAK--YGPKW---VRTRTILDRFNPRWNEQYTWDVY--D--PCTVLTIGVF 659 (983)
Q Consensus 589 ~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~--~~~~~---~rT~~~~~t~nP~Wne~~~~~v~--~--~~~~l~i~v~ 659 (983)
.++|+|+++..+... . .....-||.+. .|+.. .+|....-+.++.|||-++|++. + ....|.|+||
T Consensus 11 ~friki~~~~~~~~~----~-~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~ 85 (178)
T cd08399 11 KFRVKILGIDIPVLP----R-NTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIY 85 (178)
T ss_pred CEEEEEEeecccCcC----C-CCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEE
Confidence 467777777644221 1 11223444443 24432 36666555668999999888874 2 2458999999
Q ss_pred eCCCCCC--cC------CCCCCCCceeEEEEEEccc
Q 002002 660 DNGRYKR--DE------AGKPGKDVRVGKIRVRLST 687 (983)
Q Consensus 660 D~d~~~~--~~------~~~~~~d~~lG~~~i~l~~ 687 (983)
+...... .. ...+..+..||.+.+.|-+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD 121 (178)
T cd08399 86 CGKAPALSSKKSAESPSSESKGKHQLLYYVNLLLID 121 (178)
T ss_pred EEecCcccccccccccccccccccceEEEEEEEEEc
Confidence 9743211 00 0112346788999988855
No 281
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=82.71 E-value=5.2 Score=40.10 Aligned_cols=89 Identities=22% Similarity=0.299 Sum_probs=58.6
Q ss_pred EEEEEEEeeCCCCCCCCCCCCCCCCcEEEEEE--CCeEE----EeeeeeeccCCCCCCCCcccceEEEEec---CCCCCc
Q 002002 429 LRLTVIQTQDLQPGSGSEPKVRSPELYVKGQL--GAQLF----KTGRTSVGLSPSSSANPTWNEDLVFVAA---EPFEPF 499 (983)
Q Consensus 429 L~V~Viea~~L~~~~~~~d~~~~sdpyv~v~l--g~~~~----rT~~~~~~~~~~~t~nP~wne~f~f~~~---~~~~~~ 499 (983)
++|+|..+.+++.. ......|-||.+.+ |++.. .|+.... ...-...+.|||-+.|.+. -|.+..
T Consensus 10 ~~i~v~~~h~~~~~----~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~--~~~f~~~~~Wnewl~F~i~i~~LPrear 83 (171)
T cd04012 10 LSVTVSSLHRIPPT----WVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKI--TKSFFPRVVWDEWIEFPIPVCQLPRESR 83 (171)
T ss_pred EEEEEEEeecCChH----HhhccccEEEEEEEEECCEECcCceecccccc--ccCccccccccceEECccchhcCChhHE
Confidence 88999999999875 44445788887755 76654 3322110 0011235779999988663 345778
Q ss_pred EEEEEEeCc--C----------CceeEEEEEecccc
Q 002002 500 LVVTVEDVT--N----------GCSVGHARIQMSTV 523 (983)
Q Consensus 500 L~i~V~D~d--~----------d~~lG~~~i~L~~l 523 (983)
|.|++|+.. . +..||.+.++|=+.
T Consensus 84 L~itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 84 LVLTLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEEEEEEecCCccccccccccceEEEEEeEeeEcc
Confidence 999999865 2 25788888777663
No 282
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=82.33 E-value=2.8 Score=40.93 Aligned_cols=45 Identities=24% Similarity=0.288 Sum_probs=37.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhcccccCCchhhHHHHHHHHHH
Q 002002 793 RSKANWFRVVGCLTRAATLARWLDGIRTWAHTPTTILVHVLLVAV 837 (983)
Q Consensus 793 ~~~~n~~R~~~~~~~~~~~~~~~~~~~~W~~~~~s~~~~~~~~~~ 837 (983)
+++.=..|++.++..+...++-++.+++|+.|.+|.++.++.+++
T Consensus 63 rlr~va~rvQ~vlgd~At~gERl~allsWrdP~aT~lf~~~clv~ 107 (156)
T PF08372_consen 63 RLRSVAGRVQNVLGDVATQGERLQALLSWRDPRATALFVVFCLVA 107 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHH
Confidence 556667788889999999999999999999999998887765543
No 283
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=81.48 E-value=15 Score=35.47 Aligned_cols=54 Identities=22% Similarity=0.322 Sum_probs=38.9
Q ss_pred EeeeecCC-CCCeeceEEEEEEe--c--CCCEEEEEEEeCCCCCCcCCCCCCCC----ceeEEEEEEcccc
Q 002002 627 RTRTILDR-FNPRWNEQYTWDVY--D--PCTVLTIGVFDNGRYKRDEAGKPGKD----VRVGKIRVRLSTL 688 (983)
Q Consensus 627 rT~~~~~t-~nP~Wne~~~~~v~--~--~~~~l~i~v~D~d~~~~~~~~~~~~d----~~lG~~~i~l~~l 688 (983)
.|....-+ .++.|||.++|++. + ..+.|.|+||..+... .+ ..||.+.++|=+-
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~--------~~~~~~~~lgw~n~~lFd~ 85 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKK--------KSKKKKVPLGWVNLPLFDY 85 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECST--------TT--EEEEEEEEEEESB-T
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCC--------ccccceeEEEEEEEEeECC
Confidence 56655555 79999999999874 2 3458999999987654 23 6899999988663
No 284
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=77.98 E-value=15 Score=37.38 Aligned_cols=59 Identities=8% Similarity=0.147 Sum_probs=41.4
Q ss_pred eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCCCCC---CccEEEEEECc
Q 002002 39 QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKTGKRS---TFLGKVKIAGS 98 (983)
Q Consensus 39 ~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~~~d---~~lG~~~i~l~ 98 (983)
..++|.+...+.+|.|+|++.+.+.. +......|.|.+++......+| ..+|-+.+||-
T Consensus 53 se~~S~V~Yh~~~P~W~EtIKl~lP~-~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 53 DEYKSVIYYQVDKPKWFETFKVAIPI-EDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred eeEEEEEEeecCCCCCceeEEEecCh-hhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 36788888889999999999998865 3455788999998643211122 45666666653
No 285
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=77.60 E-value=2.8 Score=51.26 Aligned_cols=105 Identities=13% Similarity=0.126 Sum_probs=81.5
Q ss_pred CCCCcEEEEEECC-EEEEeeeecCC-CCCeeceEEEEEEecCCCEEEEEEEeCCCCCCcCCCCCCCCceeEEEEEEcccc
Q 002002 611 GTTDAYVVAKYGP-KWVRTRTILDR-FNPRWNEQYTWDVYDPCTVLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTL 688 (983)
Q Consensus 611 g~sDpy~~~~~~~-~~~rT~~~~~t-~nP~Wne~~~~~v~~~~~~l~i~v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l 688 (983)
.+.++|+.+.+.. ...+|..+.+. -+|.|.+.|..........+++.+-+.+..| .-.++|.++++...+
T Consensus 136 ~~~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g~v~~~~~~~~~~G--------~s~~w~~v~~s~~~~ 207 (887)
T KOG1329|consen 136 KTLENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHKAGYVIFRVKGARVPG--------WSKRWGRVKISFLQY 207 (887)
T ss_pred hhccchheeeechhhhhchhhhhcccccchhhhhccccccccccEEEEeecCCcccc--------ceeEEEEeccchhhh
Confidence 3479999999876 55688888888 4999999999988888889999998888766 346899999999999
Q ss_pred cCCCeEEEEEEeeecCCCCCccceEEEEEEEEEec
Q 002002 689 DTNRVYLNSYSLTVLLPGGAKKMGEIEIAVRFTCS 723 (983)
Q Consensus 689 ~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~f~~~ 723 (983)
..|.....|+++.........+.-.+.+.+.|+..
T Consensus 208 ~~~~~~~~~~~Il~~d~~~~~~~~~~~~~~~~~~~ 242 (887)
T KOG1329|consen 208 CSGHRIGGWFPILDNDGKPHQKGSNESLRLGFTPM 242 (887)
T ss_pred hccccccceeeeeccCCccccCCcccceEEeeEee
Confidence 99888889998887644332222235555666653
No 286
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=77.03 E-value=40 Score=33.62 Aligned_cols=103 Identities=13% Similarity=0.190 Sum_probs=67.8
Q ss_pred CCCeEEEEEECC-eEEeeeCcCC--CCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCCCCCCccEEEEEECccceec
Q 002002 27 TASAYVIVDFDG-QRRRTKTKFR--DLNPQWDERLEFLVHDAESMPTEILEINLYNDKKTGKRSTFLGKVKIAGSTFAKV 103 (983)
Q Consensus 27 ~~dPyv~v~~~~-~~~~T~~~~~--t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~~~d~~lG~~~i~l~~l~~~ 103 (983)
+..-|++|.+++ +..+|+...- +..-.+||.|.+.+..- -..|.+.||.... . .+.+|+++.+|+-.....
T Consensus 36 ~~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~----Pesi~l~i~E~~~-~-~~~~la~v~vpvP~~~~~ 109 (168)
T PF15625_consen 36 KTRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRW----PESIKLEIYEKSG-L-SDRLLAEVFVPVPGSTVH 109 (168)
T ss_pred heeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecC----CCEEEEEEEEccC-c-cceEEEEEEeeCCCCccc
Confidence 457799999988 4555555433 33456889999998764 6899999996554 3 789999999998764421
Q ss_pred ---CCeeeEEEEceecC-------------------CcceeeeEEEEEEEEecC
Q 002002 104 ---GSESSVYYPLEKRS-------------------VFSQIKGEIGLKVYYIDE 135 (983)
Q Consensus 104 ---~~~~~~w~~L~~~~-------------------~~s~~~G~l~l~i~~~~~ 135 (983)
......|+.+.... ......|.|.+.+.|...
T Consensus 110 ~~~~~~~~~~~eFsS~~~~~~~~~~vg~~~~~~~~~~~~~tsG~l~~~~sW~~~ 163 (168)
T PF15625_consen 110 TSTDNVPLEEYEFSSDQPVHPDHEGVGSFEADGSNSTSLFTSGSLSYSVSWAVG 163 (168)
T ss_pred ccccCCceEeEEEcCCceeeccceeccccccCCCCcccceeeeEEEEecEEeCC
Confidence 11134455543221 011256888888888743
No 287
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=74.24 E-value=7.9 Score=35.38 Aligned_cols=97 Identities=19% Similarity=0.137 Sum_probs=51.9
Q ss_pred EEEEEECC-eEEeeeCcCCCCCCeeeeEEEEEeeecCC----CCCceEEEEEEeCCCCCCCCCccEEEEEECccceec-C
Q 002002 31 YVIVDFDG-QRRRTKTKFRDLNPQWDERLEFLVHDAES----MPTEILEINLYNDKKTGKRSTFLGKVKIAGSTFAKV-G 104 (983)
Q Consensus 31 yv~v~~~~-~~~~T~~~~~t~nP~WnE~f~f~v~~~~~----l~~~~L~v~V~~~~~~~~~d~~lG~~~i~l~~l~~~-~ 104 (983)
||.+.|.. +.+.|.++. ..+|.+|-+-.|.+.-.+. ++...+.++++.-. +.....+|.+.+++..+... +
T Consensus 2 Fct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~--g~d~~tla~~~i~l~~ll~~~~ 78 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQAL--GSDFETLAAGQISLRPLLESNG 78 (107)
T ss_dssp EEEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE---SS-EEEEEEEEE--SHHHH--S
T ss_pred EEEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeec--cCCeEEEEEEEeechhhhcCCC
Confidence 78888877 667777775 8999999998888865321 24678999998543 32467899999999998833 3
Q ss_pred CeeeEEEEceecCCcceeeeEEEEEEEE
Q 002002 105 SESSVYYPLEKRSVFSQIKGEIGLKVYY 132 (983)
Q Consensus 105 ~~~~~w~~L~~~~~~s~~~G~l~l~i~~ 132 (983)
........|.+.++. .-|.|...+.+
T Consensus 79 ~~i~~~~~l~g~~~~--~~g~l~y~~rl 104 (107)
T PF11618_consen 79 ERIHGSATLVGVSGE--DFGTLEYWIRL 104 (107)
T ss_dssp --EEEEEEE-BSSS---TSEEEEEEEEE
T ss_pred ceEEEEEEEeccCCC--eEEEEEEEEEe
Confidence 345555666555443 56877766654
No 288
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=73.35 E-value=17 Score=32.75 Aligned_cols=70 Identities=29% Similarity=0.360 Sum_probs=43.5
Q ss_pred EEEEEEEeeCCCCCCCCCCCCCCCCcEEEEEE--CCeEE----EeeeeeeccCCCCCCCCcccceEEEEec---CCCCCc
Q 002002 429 LRLTVIQTQDLQPGSGSEPKVRSPELYVKGQL--GAQLF----KTGRTSVGLSPSSSANPTWNEDLVFVAA---EPFEPF 499 (983)
Q Consensus 429 L~V~Viea~~L~~~~~~~d~~~~sdpyv~v~l--g~~~~----rT~~~~~~~~~~~t~nP~wne~f~f~~~---~~~~~~ 499 (983)
+.+.+....+.... .....++.||++.+ |++.. .|+... -...+.|||-+.|.+. -|.+..
T Consensus 13 ~~~~~~~~~~~~l~----~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~------~~~~~~Wnewl~f~i~i~~LPr~a~ 82 (100)
T smart00142 13 LVITIALIHGIPLN----WSRDYSDLYVEIQLYHGGKLLCLPVSTSYKP------FFPSVKWNEWLTFPIQISDLPREAR 82 (100)
T ss_pred eEEEEEEeeCCCcc----cccCcceEEEEEEEEECCEEccCcEEecccC------CCCCcccceeEEccCchhcCChhhE
Confidence 45556666666543 22223588888855 66544 333221 2445889999988664 345678
Q ss_pred EEEEEEeCc
Q 002002 500 LVVTVEDVT 508 (983)
Q Consensus 500 L~i~V~D~d 508 (983)
|.|++|+..
T Consensus 83 L~~~i~~~~ 91 (100)
T smart00142 83 LCITIYEVK 91 (100)
T ss_pred EEEEEEEee
Confidence 999999853
No 289
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=70.95 E-value=1.4 Score=52.28 Aligned_cols=96 Identities=13% Similarity=0.100 Sum_probs=65.1
Q ss_pred CCCCeEEEEEECC-eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCCCCCCccEEEEEECccceecC
Q 002002 26 GTASAYVIVDFDG-QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKTGKRSTFLGKVKIAGSTFAKVG 104 (983)
Q Consensus 26 g~~dPyv~v~~~~-~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~~~d~~lG~~~i~l~~l~~~~ 104 (983)
...+||+.|.+.- +...+.+...+..|.|+++|...+.. ...+.|.||+..... .+.+.-.+.+..+++....
T Consensus 26 ~al~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v~~-----~~~~~i~v~~~~~~~-~~~~~a~~~~~~e~~k~~~ 99 (694)
T KOG0694|consen 26 QALQPYLAVELKVKQGAENMTKVELRIPELRETFHVEVVA-----GGAKNIIVLLKSPDP-KALSEAQLSLQEESQKLLA 99 (694)
T ss_pred hhhhhhheeccceeecccccCCCCCCCchhhhheeeeeec-----CCceEEEEEecCCcc-hhhHHHhHHHHHHHHHHHh
Confidence 3568999999876 44567778889999999999999765 578899999654333 3444444444444444333
Q ss_pred CeeeEEEEceecCCcceeeeEEEEEEEEec
Q 002002 105 SESSVYYPLEKRSVFSQIKGEIGLKVYYID 134 (983)
Q Consensus 105 ~~~~~w~~L~~~~~~s~~~G~l~l~i~~~~ 134 (983)
.....|..++.. |.+...+.+..
T Consensus 100 ~~~~~w~~~~~~-------g~~~~~~~~~~ 122 (694)
T KOG0694|consen 100 LEQRLWVLIEEL-------GTLLKPAALTG 122 (694)
T ss_pred hhhhhccccccc-------cceeeeecccC
Confidence 445678776543 88877776653
No 290
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=70.29 E-value=40 Score=30.83 Aligned_cols=93 Identities=15% Similarity=0.167 Sum_probs=49.6
Q ss_pred EEEEEECC-EEEEeeeecCCCCCeeceEEEEEEecC--------CCEEEEEEEeCCCCCCcCCCCCCCCceeEEEEEEcc
Q 002002 616 YVVAKYGP-KWVRTRTILDRFNPRWNEQYTWDVYDP--------CTVLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLS 686 (983)
Q Consensus 616 y~~~~~~~-~~~rT~~~~~t~nP~Wne~~~~~v~~~--------~~~l~i~v~D~d~~~~~~~~~~~~d~~lG~~~i~l~ 686 (983)
||.+.+-. +...|.++. ..+|.+|-+-.+.|... ...+.|+++..- + .....||.++|++.
T Consensus 2 Fct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~--g-------~d~~tla~~~i~l~ 71 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQAL--G-------SDFETLAAGQISLR 71 (107)
T ss_dssp EEEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE---S-------S-EEEEEEEEE--S
T ss_pred EEEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeec--c-------CCeEEEEEEEeech
Confidence 66666655 444555554 88999998888877532 358999998855 2 14678999999999
Q ss_pred cccC--CCeEEEEEEeeecCCCCCccceEEEEEEEEE
Q 002002 687 TLDT--NRVYLNSYSLTVLLPGGAKKMGEIEIAVRFT 721 (983)
Q Consensus 687 ~l~~--~~~~~~~~~L~~~~~~g~~~~G~l~l~~~f~ 721 (983)
.+.. +........|... .| ...|.|+..+|..
T Consensus 72 ~ll~~~~~~i~~~~~l~g~--~~-~~~g~l~y~~rl~ 105 (107)
T PF11618_consen 72 PLLESNGERIHGSATLVGV--SG-EDFGTLEYWIRLR 105 (107)
T ss_dssp HHHH--S--EEEEEEE-BS--SS--TSEEEEEEEEEE
T ss_pred hhhcCCCceEEEEEEEecc--CC-CeEEEEEEEEEec
Confidence 9863 3234445555543 23 2579999988764
No 291
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=67.84 E-value=18 Score=36.78 Aligned_cols=59 Identities=12% Similarity=0.229 Sum_probs=31.9
Q ss_pred EEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCCCCC--CccEEEEEECcc
Q 002002 40 RRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKTGKRS--TFLGKVKIAGST 99 (983)
Q Consensus 40 ~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~~~d--~~lG~~~i~l~~ 99 (983)
.+.|.+...+.+|.|+|+|.+.+... ......|.|.+++-..-.+++ ..+|-+.+||-.
T Consensus 60 ~~~S~v~yh~k~P~f~deiKi~LP~~-l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 60 SYYSSVYYHNKNPQFNDEIKIQLPPD-LFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp -EE----TT-SS-EEEEEEEEEE-CC-CCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred EEEEEEEecCCCCCccEEEEEEcCch-hcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 45677788889999999999988653 234678999998743221122 466666666554
No 292
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.44 E-value=15 Score=33.53 Aligned_cols=73 Identities=18% Similarity=0.222 Sum_probs=43.5
Q ss_pred CCCCccccccCCCCCCCCcHHHHHHHHHHHHHHHHH------HH------------HHHHHHhhhHhHhhhccccChhhH
Q 002002 863 VGPDELDEEFDGFPTSRPSEVVRIRYDRLRALAGRA------QT------------LLGDVAAQGERLEALFNWRDPRAT 924 (983)
Q Consensus 863 ~~~~~~~~e~d~~~~~~~~~~~~~r~~~l~~~~~~v------Q~------------~~~~~a~~~Er~~~l~~w~~p~~t 924 (983)
.+.+.+|.|.| +--+.|+.|..+|++++..+ || +-+.+.-..-|++++.-=.--.+.
T Consensus 25 ~~~~~le~ENe-----e~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L~gtm~r~~~~ar~sg~~l~ 99 (118)
T KOG3385|consen 25 SHLASLERENE-----EAAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFLSGTMGRLKTMARRSGISLL 99 (118)
T ss_pred hhHHHHHhhhH-----HHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhhHHHHHHHHHHHHHHHhcCCcchH
Confidence 34444544444 34578899999998866542 43 234455556666666655555555
Q ss_pred HHHHHHHHHHHHHHhh
Q 002002 925 WIFVVLCLVASLVFYA 940 (983)
Q Consensus 925 ~~~~~~~~~~~~~l~~ 940 (983)
+...+||+|+.+++++
T Consensus 100 ~~m~~f~lV~~fi~~~ 115 (118)
T KOG3385|consen 100 CWMAVFSLVAFFILWV 115 (118)
T ss_pred HHHHHHHHHHHHHhhe
Confidence 5556777777666553
No 293
>PF06398 Pex24p: Integral peroxisomal membrane peroxin; InterPro: IPR010482 Peroxisomes play diverse roles in the cell, compartmentalising many activities related to lipid metabolism and functioning in the decomposition of toxic hydrogen peroxide. Sequence similarity was identified between two hypothetical proteins and the peroxin integral membrane protein Pex24p [].
Probab=64.09 E-value=8 Score=43.95 Aligned_cols=42 Identities=24% Similarity=0.459 Sum_probs=31.4
Q ss_pred HHHHHhhh---HhHhhhccccChhhHHHHHHHHHHHHHHHhhhhh
Q 002002 902 LGDVAAQG---ERLEALFNWRDPRATWIFVVLCLVASLVFYAVPF 943 (983)
Q Consensus 902 ~~~~a~~~---Er~~~l~~w~~p~~t~~~~~~~~~~~~~l~~vp~ 943 (983)
++.+-... .++..+++|++|..|..|++++...++..|+..+
T Consensus 19 l~~~f~~~~~~d~vl~il~W~~p~~t~~~L~l~t~~~l~p~l~l~ 63 (359)
T PF06398_consen 19 LGPIFPFQLILDRVLRILTWTNPDYTLSFLLLYTFLCLNPYLLLL 63 (359)
T ss_pred HHHhhHHHHHHHHHHHeEEeCCCCcchHHHHHHHHHHHHHHHHHH
Confidence 34444444 7888999999999888888888888877776544
No 294
>PF08151 FerI: FerI (NUC094) domain; InterPro: IPR012968 The ferlin gene family are characterised by multiple tandem C2 domains and a C-terminal transmembrane domain. They are found in a wide range of species and their function remains unknown, however, mutations in its two most well-characterised members, dysferlin and otoferlin, have been implicated in human disease []. This domain is present in proteins of the Ferlin family, which includes Otoferlin, Myoferlin and Dysferlin. It is often located between two C2 domains [].
Probab=62.59 E-value=20 Score=30.11 Aligned_cols=42 Identities=17% Similarity=0.294 Sum_probs=33.1
Q ss_pred EecccccccccCCCCCcceEEeccCCCC--CCcceEEEEEEEEecc
Q 002002 518 IQMSTVERRIDDRAEPKSRWFNLVGDET--RPYAGRIHLRACLEGG 561 (983)
Q Consensus 518 i~L~~l~~~~~~~~~~~~~w~~L~~~~~--~~~~G~l~l~i~l~g~ 561 (983)
+++..+..+++|+ ...+|..|..+.. ...+|.|.+.|++-|.
T Consensus 1 ~DlgtVY~qP~H~--~~~KW~~L~dP~D~~~G~kGYlKv~i~Vlg~ 44 (72)
T PF08151_consen 1 LDLGTVYNQPDHQ--FYRKWALLTDPDDTSAGVKGYLKVDISVLGP 44 (72)
T ss_pred CceeeeecCCCCe--eEeceEEecCCCCCccCCceEEEEEEEEEcC
Confidence 3567777777886 8899999987653 5668999999998774
No 295
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=62.17 E-value=75 Score=34.68 Aligned_cols=110 Identities=17% Similarity=0.276 Sum_probs=74.1
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCeEEEEEECCeEEeeeCcCCCCCC--eeeeEEEEEeeecCCCCCceEEEEEEeCCCCCC
Q 002002 8 KLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNP--QWDERLEFLVHDAESMPTEILEINLYNDKKTGK 85 (983)
Q Consensus 8 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP--~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~~ 85 (983)
.|.|.|.+-.++ .....-|+.++.|+...+|..+.-+..- .-.|.....+.-- +..|++.+|.. .+.
T Consensus 59 ~LLVeI~EI~~i-----~k~khiyIef~~Gr~d~TT~~IpTsKK~RI~IqqRV~IkIRQc----DnTLkI~lfKK-kLv- 127 (508)
T PTZ00447 59 YLLVKINEIFNI-----NKYKHIYIIFSTDKYDFTTDEIPTNKKNRIHIDQRVDIKIRQC----DETLRVDLFTT-KLT- 127 (508)
T ss_pred eEEEEehhhhcc-----ccceeEEEEEEcCceEEEccccccCcCceEEEeeeeeeeeeec----CceEEEEEEec-ccc-
Confidence 456666665554 2356789999999988888665433322 2345555555543 78999999954 343
Q ss_pred CCCccEEEEEECcc-ceecCCeeeEEEEceecCCcceeeeEEEEEEE
Q 002002 86 RSTFLGKVKIAGST-FAKVGSESSVYYPLEKRSVFSQIKGEIGLKVY 131 (983)
Q Consensus 86 ~d~~lG~~~i~l~~-l~~~~~~~~~w~~L~~~~~~s~~~G~l~l~i~ 131 (983)
+..-||...+.+.. +....-+...||.+.+.+ ...+.|.++++
T Consensus 128 kk~hIgdI~InIn~dIIdk~FPKnkWy~c~kDG---q~~cRIqLSFh 171 (508)
T PTZ00447 128 KKVHIGQIKIDINASVISKSFPKNEWFVCFKDG---QEICKVQMSFY 171 (508)
T ss_pred ceeEEEEEEecccHHHHhccCCccceEEEecCC---ceeeeEEEEeh
Confidence 67889999999884 444556788999996654 23577776654
No 296
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=61.29 E-value=42 Score=33.97 Aligned_cols=59 Identities=12% Similarity=0.082 Sum_probs=34.4
Q ss_pred EEEEeeeecCCCCCeeceEEEEEEecC---CCEEEEEEEeCCCCCCcCCCCCCCCceeEEEEEEccc
Q 002002 624 KWVRTRTILDRFNPRWNEQYTWDVYDP---CTVLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLST 687 (983)
Q Consensus 624 ~~~rT~~~~~t~nP~Wne~~~~~v~~~---~~~l~i~v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~ 687 (983)
..+.|.+..++.+|.|+|+|.+.+... ..-|.|++++-..-.+ ..++..+|.+-+||-+
T Consensus 59 ~~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~-----~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 59 TSYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKES-----KEKSKPFGYAFLPLMD 120 (184)
T ss_dssp S-EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSS-----S-SS-EEEEEEEESB-
T ss_pred eEEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccc-----cCccceeEEEEEEeee
Confidence 456788899999999999999988643 3479999999775431 0122689999888877
No 297
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=60.00 E-value=50 Score=32.93 Aligned_cols=68 Identities=18% Similarity=0.261 Sum_probs=50.3
Q ss_pred CCcEEEEEECCEEE-Eeeeec--CCCCCeeceEEEEEEecCCCEEEEEEEeCCCCCCcCCCCCCCCceeEEEEEEccccc
Q 002002 613 TDAYVVAKYGPKWV-RTRTIL--DRFNPRWNEQYTWDVYDPCTVLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLD 689 (983)
Q Consensus 613 sDpy~~~~~~~~~~-rT~~~~--~t~nP~Wne~~~~~v~~~~~~l~i~v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~ 689 (983)
.--|+++.++++.+ +|+... ....-.+|+.|.+.+...-..|.|+||..... .+..|+.+.+++-...
T Consensus 37 ~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i~E~~~~---------~~~~la~v~vpvP~~~ 107 (168)
T PF15625_consen 37 TRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEIYEKSGL---------SDRLLAEVFVPVPGST 107 (168)
T ss_pred eeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEEEEccCc---------cceEEEEEEeeCCCCc
Confidence 45688888887544 444332 33345678999999988778999999998873 5779999999986543
No 298
>cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast. BUD2 has sequence similarity to the catalytic domain of RasGAPs, and stimulates the hydrolysis of BUD1-GTP to BUD1-GDP. Elimination of Bud2p activity by mutation causes a random budding pattern with no growth defect. Overproduction of Bud2p also alters the budding pattern.
Probab=52.31 E-value=69 Score=36.72 Aligned_cols=43 Identities=23% Similarity=0.142 Sum_probs=33.8
Q ss_pred eeEEEEEEccc-ccCCCeEEEEEEeeecCCCCCccceEEEEEEEEE
Q 002002 677 RVGKIRVRLST-LDTNRVYLNSYSLTVLLPGGAKKMGEIEIAVRFT 721 (983)
Q Consensus 677 ~lG~~~i~l~~-l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~f~ 721 (983)
.+|.+.|++.. +..+...+.|||+.+....+ ...|.| +.++|+
T Consensus 1 ~~G~v~i~~~~~~~~~~~~e~w~~i~~~~~~~-~~~~~l-lk~~~~ 44 (395)
T cd05137 1 LVGRIDITLEMILDRGLDKETWLPIFDVDNKS-VGEGLI-IKVSSE 44 (395)
T ss_pred CeeEEEeehhhhccCCCCceeeeccccCCCCC-cCcceE-EEEEee
Confidence 48999999999 67777789999998864443 335777 888886
No 299
>PF07002 Copine: Copine; InterPro: IPR010734 This represents a conserved region approximately 180 residues long within eukaryotic copines. Copines are Ca2+-dependent phospholipid-binding proteins that are thought to be involved in membrane-trafficking, and may also be involved in cell division and growth [].
Probab=51.76 E-value=11 Score=36.52 Aligned_cols=31 Identities=26% Similarity=0.513 Sum_probs=25.7
Q ss_pred cccccCCCChhhHHHHHHHHHHHHHHHhhcCCCCChHHHHHhhcCCCcce
Q 002002 739 RMHYVRPLGPAQQDILRHTAMRIVTARLARSEPPLGQEVVQFMLDTDTHV 788 (983)
Q Consensus 739 ~~hy~~p~~~~q~~~l~~~a~~~v~~~l~~~~p~l~~~vv~~~~d~~~~~ 788 (983)
++||.+|...|+| .+|+ +.+++.+++||.++
T Consensus 1 SLH~~~~~~~N~Y----~~ai---------------~~vg~il~~Yd~dk 31 (146)
T PF07002_consen 1 SLHYISPNQPNPY----QQAI---------------RAVGEILQDYDSDK 31 (146)
T ss_pred CcccCCCCCCCHH----HHHH---------------HHHHHHHHhhccCC
Confidence 5899999999999 7777 56788888887665
No 300
>PF08151 FerI: FerI (NUC094) domain; InterPro: IPR012968 The ferlin gene family are characterised by multiple tandem C2 domains and a C-terminal transmembrane domain. They are found in a wide range of species and their function remains unknown, however, mutations in its two most well-characterised members, dysferlin and otoferlin, have been implicated in human disease []. This domain is present in proteins of the Ferlin family, which includes Otoferlin, Myoferlin and Dysferlin. It is often located between two C2 domains [].
Probab=47.70 E-value=24 Score=29.70 Aligned_cols=46 Identities=22% Similarity=0.211 Sum_probs=34.1
Q ss_pred eccccCCCCCCCCCCCCceEEcccCC----CCCceEEEEEEeccCcchhhhh
Q 002002 356 DLQEVPKRVPPDSPLAPQWYSLESEK----LPGNDVMLAVWIGTQADEAFQE 403 (983)
Q Consensus 356 ~l~~l~~~~~~~~~l~~~w~~L~~~~----~~~g~i~l~~~~g~~~de~~~~ 403 (983)
|+..+. .++++.+.++|..|.++. ..+|++.+++.+-.+.|+....
T Consensus 2 DlgtVY--~qP~H~~~~KW~~L~dP~D~~~G~kGYlKv~i~Vlg~GD~~~~~ 51 (72)
T PF08151_consen 2 DLGTVY--NQPDHQFYRKWALLTDPDDTSAGVKGYLKVDISVLGPGDEPPVE 51 (72)
T ss_pred ceeeee--cCCCCeeEeceEEecCCCCCccCCceEEEEEEEEEcCCCcCCCC
Confidence 444444 345788889999999882 4789999999987777776443
No 301
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=47.35 E-value=73 Score=37.35 Aligned_cols=86 Identities=16% Similarity=0.251 Sum_probs=63.5
Q ss_pred EEEEEEceeccccccccCCCCCCCCCcEEEEEECCEEEEeeeecCCCCCeeceEEEEEEecCCCEEEEEEEeCCCCCCcC
Q 002002 589 LLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILDRFNPRWNEQYTWDVYDPCTVLTIGVFDNGRYKRDE 668 (983)
Q Consensus 589 ~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~~~~rT~~~~~t~nP~Wne~~~~~v~~~~~~l~i~v~D~d~~~~~~ 668 (983)
.++|.|.+-.||.+. ....=.||..++.+.+.+|..... ..|.|..+-.|.-..|-.++.+.+|.+...-
T Consensus 342 smevvvmevqglksv------apnrivyctmevegeklqtdqaea-skp~wgtqgdfstthplpvvkvklftestgv--- 411 (1218)
T KOG3543|consen 342 SMEVVVMEVQGLKSV------APNRIVYCTMEVEGEKLQTDQAEA-SKPKWGTQGDFSTTHPLPVVKVKLFTESTGV--- 411 (1218)
T ss_pred eeeEEEeeecccccc------CCCeeEEEEEEecccccccchhhh-cCCCCCcCCCcccCCCCceeEEEEEeeccee---
Confidence 477888889999443 223457999999998888875543 4799999988888888889999999876521
Q ss_pred CCCCCCCceeEEEEEEcc
Q 002002 669 AGKPGKDVRVGKIRVRLS 686 (983)
Q Consensus 669 ~~~~~~d~~lG~~~i~l~ 686 (983)
-+-.|..||++.+.-.
T Consensus 412 --laledkelgrvil~pt 427 (1218)
T KOG3543|consen 412 --LALEDKELGRVILQPT 427 (1218)
T ss_pred --EEeechhhCeEEEecC
Confidence 1135677999887543
No 302
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=46.21 E-value=2.4e+02 Score=32.02 Aligned_cols=108 Identities=19% Similarity=0.207 Sum_probs=60.8
Q ss_pred CCCcEEEEEECCEEEEeeeecC----CCCC-eec-eEEEEEEe---------cCC-----CEEEEEEEeCCCCCCcCCCC
Q 002002 612 TTDAYVVAKYGPKWVRTRTILD----RFNP-RWN-EQYTWDVY---------DPC-----TVLTIGVFDNGRYKRDEAGK 671 (983)
Q Consensus 612 ~sDpy~~~~~~~~~~rT~~~~~----t~nP-~Wn-e~~~~~v~---------~~~-----~~l~i~v~D~d~~~~~~~~~ 671 (983)
.+-.||.|++.+--.+|..+-- +.+| .-+ -.-.|.+. .++ ..|+|.||-...-..|. .
T Consensus 35 sspCfC~IrL~~fP~Qta~vPLi~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~i~VY~Gr~G~tCG--v 112 (460)
T PF06219_consen 35 SSPCFCEIRLKGFPSQTAPVPLISSSEPEPPDSHSLAASFHLDKSDLRRLLAKPCFYSPRPCLEISVYTGRRGSTCG--V 112 (460)
T ss_pred CCCeEEEEecCCCCccceeeeeccCCCCCCCCcCCcceEEecCHHHHHHHhCCCccccCCceEEEEEEECCCCCccc--c
Confidence 5688999999886555654421 1111 111 12223331 121 47999999966544322 2
Q ss_pred CCCCceeEEEEEEcccccC--CC---eEEEEEEeeecCCC-CCccceEEEEEEEEEe
Q 002002 672 PGKDVRVGKIRVRLSTLDT--NR---VYLNSYSLTVLLPG-GAKKMGEIEIAVRFTC 722 (983)
Q Consensus 672 ~~~d~~lG~~~i~l~~l~~--~~---~~~~~~~L~~~~~~-g~~~~G~l~l~~~f~~ 722 (983)
+..-.+||+++|+|. +.. ++ .+..|..+-..+.. +.....+|||.++-.+
T Consensus 113 ~~~~klLG~v~vpld-l~~ae~kp~v~hnGWi~iGk~~~~~~~~~~aeLHl~Vr~Ep 168 (460)
T PF06219_consen 113 GNSGKLLGKVRVPLD-LKWAEGKPVVFHNGWISIGKNKQGSGKSPSAELHLVVRAEP 168 (460)
T ss_pred cccceEEEEEEEEec-cccccCCeeEEEccceecCCCCCCCCCCCcceEEEEEeccC
Confidence 235579999999987 332 22 34567766543222 1123578999887754
No 303
>PF14909 SPATA6: Spermatogenesis-assoc protein 6
Probab=45.70 E-value=89 Score=29.94 Aligned_cols=83 Identities=12% Similarity=0.119 Sum_probs=62.4
Q ss_pred EEEEEEEeecCCCCCCCCcEEEEEEcCeeeeeeec-CC-Cc-cceEEEEee------------cCCCCCeEEEEEEcCCc
Q 002002 275 LYVRVLKAKRAGNVSNGSLYAKLVIGTHSIKTKSQ-AD-KD-WDQVFAFDK------------EGLNSTSLEVSVWSEEK 339 (983)
Q Consensus 275 L~V~v~~a~~L~~~~~~dPyv~v~~~~~~~kTk~~-~~-P~-Wne~f~f~~------------~~~~~~~l~v~V~d~d~ 339 (983)
|.|+-+.|=+.-+....|-|..|++-|+-.+|+.. .. |. ++|.|.|.+ +.+..+.+.++++...-
T Consensus 4 L~i~aVTCPGv~L~~~~~vyL~v~~lg~~~~T~~~ppvFPllfhek~~FeK~F~~~~dp~~l~~~Le~e~~~iELiQl~~ 83 (140)
T PF14909_consen 4 LEIHAVTCPGVWLCDKGDVYLSVCILGQYKRTRCLPPVFPLLFHEKFRFEKVFPNAVDPAQLADLLEDETVYIELIQLVP 83 (140)
T ss_pred EEEEEEecCCeEeCCCCCEEEEEEEcccEeecccCCCcCCeeEeeEEEeEEEecCCCCHHHHHHHhhcCcEEEEEEEEeC
Confidence 56666666665566788999999999999999988 55 54 899999873 23347788898888641
Q ss_pred CCccccCCceeEEEEEeccccCC
Q 002002 340 KENEECTENCLGTVLFDLQEVPK 362 (983)
Q Consensus 340 ~~~d~~~d~~lG~~~i~l~~l~~ 362 (983)
.....|+...-++.|+..
T Consensus 84 -----~~g~iLA~ye~n~rDfLf 101 (140)
T PF14909_consen 84 -----PAGEILAYYEENTRDFLF 101 (140)
T ss_pred -----CCCcEEEEEeccccceEc
Confidence 237788888878877754
No 304
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=42.09 E-value=1.1e+02 Score=31.18 Aligned_cols=59 Identities=10% Similarity=0.094 Sum_probs=40.4
Q ss_pred EEEEeeeecCCCCCeeceEEEEEEec---CCCEEEEEEEeCCCCCCcCCCCCCCCceeEEEEEEcc
Q 002002 624 KWVRTRTILDRFNPRWNEQYTWDVYD---PCTVLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLS 686 (983)
Q Consensus 624 ~~~rT~~~~~t~nP~Wne~~~~~v~~---~~~~l~i~v~D~d~~~~~~~~~~~~d~~lG~~~i~l~ 686 (983)
..++|-+.+.+-+|.|+|++.+.+.- ...-|.++++......+. + .....+|-.-+||-
T Consensus 53 se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~k--d--~~e~pfg~s~lpL~ 114 (196)
T cd08694 53 DEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAK--D--KSEKPFALSFVKLM 114 (196)
T ss_pred eeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeecccccc--C--CCCCceEEEEEeee
Confidence 56788898999999999999988853 234788898776532210 0 01246777777774
No 305
>PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER). Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A.
Probab=41.79 E-value=11 Score=37.48 Aligned_cols=58 Identities=14% Similarity=0.092 Sum_probs=15.4
Q ss_pred hhhHhHhhhccccChhhHHHHHHHHHHHHHHHhhhhhhhhhhheeeecccCCCCCCCC
Q 002002 907 AQGERLEALFNWRDPRATWIFVVLCLVASLVFYAVPFKLFVLGSGFYYLRHPRFRGDM 964 (983)
Q Consensus 907 ~~~Er~~~l~~w~~p~~t~~~~~~~~~~~~~l~~vp~r~~~~~~g~~~~r~p~~~~~~ 964 (983)
.....++.++.|+||..|..++++|++.+.+..++++..++.+..+..+-=|.+-..+
T Consensus 95 ~~~~~~~~l~~~~~~~~~l~~~~~l~~l~~lg~~~s~~~L~~l~~~~~f~~P~ly~~~ 152 (169)
T PF02453_consen 95 SVLSWLRRLVFGEDPKKSLKVFVVLYILSFLGSWFSFLTLLYLGVLGAFTVPKLYEKY 152 (169)
T ss_dssp HHHHHHHCCCHCT-TTGGG---------------------------------------
T ss_pred HHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhhHHHHHHH
Confidence 3477788899999999999999999999999999998888877666666667666554
No 306
>PF04842 DUF639: Plant protein of unknown function (DUF639); InterPro: IPR006927 The sequences in this family are plant proteins of unknown function.
Probab=41.07 E-value=24 Score=42.38 Aligned_cols=59 Identities=25% Similarity=0.375 Sum_probs=41.9
Q ss_pred HHHHHHHhhhHhHhhhccccChhhHHHHHHHHHHH---HHHHhhhhhhhhhhheeeecccCC
Q 002002 900 TLLGDVAAQGERLEALFNWRDPRATWIFVVLCLVA---SLVFYAVPFKLFVLGSGFYYLRHP 958 (983)
Q Consensus 900 ~~~~~~a~~~Er~~~l~~w~~p~~t~~~~~~~~~~---~~~l~~vp~r~~~~~~g~~~~r~p 958 (983)
.+|-=+...+.+++.+..|.+|..|..|+++.+.+ ..+.|+.|.-.+.++.+.-.+|+-
T Consensus 494 ELL~Pl~~i~~~~~~l~~We~P~kt~~Fl~~~~~iI~r~wl~Y~~p~~Ll~~a~~Ml~~r~~ 555 (683)
T PF04842_consen 494 ELLFPLIEIAKWLQKLASWEEPLKTLVFLALFLYIIYRGWLGYIFPAFLLFSAVFMLWLRYQ 555 (683)
T ss_pred hccccHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444567889999999999999999888776654 345678887666665544445553
No 307
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=40.50 E-value=26 Score=43.19 Aligned_cols=101 Identities=18% Similarity=0.288 Sum_probs=71.8
Q ss_pred CCeEEEEEECC-eEEeeeCcCCC-CCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCCCCCCccEEEEEECccceecCC
Q 002002 28 ASAYVIVDFDG-QRRRTKTKFRD-LNPQWDERLEFLVHDAESMPTEILEINLYNDKKTGKRSTFLGKVKIAGSTFAKVGS 105 (983)
Q Consensus 28 ~dPyv~v~~~~-~~~~T~~~~~t-~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~~~d~~lG~~~i~l~~l~~~~~ 105 (983)
.++|+++.+.. ...+|....+. -+|.|.+.|....... ...+.+.+-+.+-.+ ....+|.+.++...+. .+.
T Consensus 138 ~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~----~g~v~~~~~~~~~~G-~s~~w~~v~~s~~~~~-~~~ 211 (887)
T KOG1329|consen 138 LENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHK----AGYVIFRVKGARVPG-WSKRWGRVKISFLQYC-SGH 211 (887)
T ss_pred ccchheeeechhhhhchhhhhcccccchhhhhcccccccc----ccEEEEeecCCcccc-ceeEEEEeccchhhhh-ccc
Confidence 58999999977 55678888777 6899999998777665 567778774333333 4789999999999888 557
Q ss_pred eeeEEEEceecCCcceeee-EEEEEEEEec
Q 002002 106 ESSVYYPLEKRSVFSQIKG-EIGLKVYYID 134 (983)
Q Consensus 106 ~~~~w~~L~~~~~~s~~~G-~l~l~i~~~~ 134 (983)
....|+++........-.| .+.+++.|..
T Consensus 212 ~~~~~~~Il~~d~~~~~~~~~~~~~~~~~~ 241 (887)
T KOG1329|consen 212 RIGGWFPILDNDGKPHQKGSNESLRLGFTP 241 (887)
T ss_pred cccceeeeeccCCccccCCcccceEEeeEe
Confidence 7778988766544332223 4455565553
No 308
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=36.91 E-value=82 Score=32.01 Aligned_cols=51 Identities=12% Similarity=0.194 Sum_probs=34.4
Q ss_pred EEEeeeeeeccCCCCCCCCcccceEEEEecCCC--CCcEEEEEEeCc-C----CceeEEEEEec
Q 002002 464 LFKTGRTSVGLSPSSSANPTWNEDLVFVAAEPF--EPFLVVTVEDVT-N----GCSVGHARIQM 520 (983)
Q Consensus 464 ~~rT~~~~~~~~~~~t~nP~wne~f~f~~~~~~--~~~L~i~V~D~d-~----d~~lG~~~i~L 520 (983)
.++|-+.. .+.+|.|+|++-+.++... ..+|.|+++.+. + ...+|-+-+||
T Consensus 54 e~~S~V~y------H~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL 111 (189)
T cd08695 54 EYRSFVLY------HNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPL 111 (189)
T ss_pred eEEEEEEE------cCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEee
Confidence 45777775 5789999999988776442 458999887654 1 13455544444
No 309
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=36.46 E-value=1.7e+02 Score=29.32 Aligned_cols=59 Identities=14% Similarity=0.141 Sum_probs=38.8
Q ss_pred EEEeeeecCCCCCeeceEEEEEEec---CCCEEEEEEEeCCCCCCcCCCCCCCCceeEEEEEEccc
Q 002002 625 WVRTRTILDRFNPRWNEQYTWDVYD---PCTVLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLST 687 (983)
Q Consensus 625 ~~rT~~~~~t~nP~Wne~~~~~v~~---~~~~l~i~v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~ 687 (983)
.++|-+..+ -+|.|++++.+.+.. +..-|.+++++-+...+ ........+|-+-+||-+
T Consensus 54 ~~~sv~~~~-k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~---~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 54 EYTSVVYYH-KNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKK---QGDKEETPFGYAFLPLMD 115 (178)
T ss_pred eEEEEEEcC-CCCCCceeEEEecCCccCCCeEEEEEEEccccccc---cCCCccceEEEEEEeccc
Confidence 344444444 899999999998853 23479999998764320 001235578888888765
No 310
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=35.00 E-value=1.5e+02 Score=29.98 Aligned_cols=62 Identities=10% Similarity=0.066 Sum_probs=41.3
Q ss_pred EEEEeeeecCCCCCeeceEEEEEEecC---CCEEEEEEEeCCCCCCcCCCCCCCCceeEEEEEEccc
Q 002002 624 KWVRTRTILDRFNPRWNEQYTWDVYDP---CTVLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLST 687 (983)
Q Consensus 624 ~~~rT~~~~~t~nP~Wne~~~~~v~~~---~~~l~i~v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~ 687 (983)
....|.+...+-+|.|++++-+.+.-. ..-|.|+.|+-+...+ .........+|-.-+||-+
T Consensus 54 ~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k--~~~~~~e~~~Gys~lPL~~ 118 (179)
T cd08696 54 TEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKK--QEGGSVETPIGYTWLPLLR 118 (179)
T ss_pred eeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeecccc--ccCCCccceEEEEEEeeec
Confidence 567888899999999999999887532 2378899988654221 0001123467777777653
No 311
>PF14924 DUF4497: Protein of unknown function (DUF4497)
Probab=33.78 E-value=1.1e+02 Score=28.27 Aligned_cols=63 Identities=19% Similarity=0.237 Sum_probs=41.6
Q ss_pred CEEEEEEEeCCCCCCcCCCCCCCCceeEEEEEEccccc--------------CCCeEEEEEEeeecCCCCCccceEEEEE
Q 002002 652 TVLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLD--------------TNRVYLNSYSLTVLLPGGAKKMGEIEIA 717 (983)
Q Consensus 652 ~~l~i~v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~--------------~~~~~~~~~~L~~~~~~g~~~~G~l~l~ 717 (983)
..|.+.+++-..... .....+||.+.|++.++. .-...+..|+|.+. .|. ..|+|.+.
T Consensus 29 ~pl~i~~~~~~~~~~-----~~~~~liG~~~i~l~~~~~~i~~~~~~~~~~p~s~~~k~~f~L~~~--~~~-~~G~I~l~ 100 (112)
T PF14924_consen 29 FPLYIVVKKVPPGFP-----TPPPMLIGSCPISLAEAFNRILKDSAECNGQPSSKTIKGTFPLFDE--NGN-PVGEISLY 100 (112)
T ss_pred CceEEEEEecCCCCC-----CCccceeeEEEecHHHHHHHHHHHHHhhccCCCchhhcceeEeecC--CCc-eeeeEEEE
Confidence 467887776543100 014568999999998754 11245677899864 343 57999999
Q ss_pred EEEEe
Q 002002 718 VRFTC 722 (983)
Q Consensus 718 ~~f~~ 722 (983)
+|.+|
T Consensus 101 iRLsc 105 (112)
T PF14924_consen 101 IRLSC 105 (112)
T ss_pred EEEec
Confidence 99875
No 312
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=33.07 E-value=73 Score=27.05 Aligned_cols=20 Identities=25% Similarity=0.541 Sum_probs=12.4
Q ss_pred HHHHHHHHHHhh-hhcccccc
Q 002002 828 ILVHVLLVAVVL-SLRFRYRQ 847 (983)
Q Consensus 828 ~~~~~~~~~~v~-~~~y~~~~ 847 (983)
+++|++|+..+| ..+|+.+.
T Consensus 10 livf~ifVap~WL~lHY~sk~ 30 (75)
T PF06667_consen 10 LIVFMIFVAPIWLILHYRSKW 30 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 445666777777 55676543
No 313
>KOG4027 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.47 E-value=5.1e+02 Score=25.32 Aligned_cols=72 Identities=13% Similarity=0.116 Sum_probs=46.0
Q ss_pred CCCeEEEEEE--C-------C-e---EEeeeCcCCCCCC-eeeeEEEEEeeecCCCCCceEEEEEEeCCCCCCCCCccEE
Q 002002 27 TASAYVIVDF--D-------G-Q---RRRTKTKFRDLNP-QWDERLEFLVHDAESMPTEILEINLYNDKKTGKRSTFLGK 92 (983)
Q Consensus 27 ~~dPyv~v~~--~-------~-~---~~~T~~~~~t~nP-~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~~~d~~lG~ 92 (983)
-+|.||+.++ + | | .+-|.-.+.-.|| +||--++..........=..|.++||..+..+ +|...|-
T Consensus 25 ~~dv~~ky~~Vag~DW~~~~Gpqegvsq~s~~~r~~~~~iv~n~Pievt~KstsPygWPqivl~vfg~d~~G-~d~v~GY 103 (187)
T KOG4027|consen 25 ESDVCVKYSTVAGGDWKIINGPQEGVSQSSFSFRGADNQIVINLPIEVTLKSTSPYGWPQIVLNVFGKDHSG-KDCVTGY 103 (187)
T ss_pred CCceEEEEEEEecCCceeccCcccchhhheeccccCCCceEEecceEEEeccCCCCCCceEEEEEecCCcCC-cceeeee
Confidence 4678888876 1 1 1 1222222222344 68887777776655455668999999777776 8888888
Q ss_pred EEEECcc
Q 002002 93 VKIAGST 99 (983)
Q Consensus 93 ~~i~l~~ 99 (983)
..+++-.
T Consensus 104 g~~hiP~ 110 (187)
T KOG4027|consen 104 GMLHIPT 110 (187)
T ss_pred eeEecCc
Confidence 7776554
No 314
>PF14909 SPATA6: Spermatogenesis-assoc protein 6
Probab=29.96 E-value=4.7e+02 Score=25.16 Aligned_cols=89 Identities=17% Similarity=0.153 Sum_probs=56.8
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCeEEEEEECCeEEeeeCcCCCCCCeeeeEEEEEeeecC---------CCCCceEEEEEE
Q 002002 8 KLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHDAE---------SMPTEILEINLY 78 (983)
Q Consensus 8 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~~---------~l~~~~L~v~V~ 78 (983)
.|+++-+.|-+.--.+ ..|-|..|++-|+.++|+...-..-=.++|.|.|.-.... .|..+.+.++++
T Consensus 3 eL~i~aVTCPGv~L~~---~~~vyL~v~~lg~~~~T~~~ppvFPllfhek~~FeK~F~~~~dp~~l~~~Le~e~~~iELi 79 (140)
T PF14909_consen 3 ELEIHAVTCPGVWLCD---KGDVYLSVCILGQYKRTRCLPPVFPLLFHEKFRFEKVFPNAVDPAQLADLLEDETVYIELI 79 (140)
T ss_pred EEEEEEEecCCeEeCC---CCCEEEEEEEcccEeecccCCCcCCeeEeeEEEeEEEecCCCCHHHHHHHhhcCcEEEEEE
Confidence 3556666665543332 4589999999999999988765555578999999754432 234666777776
Q ss_pred eCCCCCCCCCccEEEEEECccce
Q 002002 79 NDKKTGKRSTFLGKVKIAGSTFA 101 (983)
Q Consensus 79 ~~~~~~~~d~~lG~~~i~l~~l~ 101 (983)
..... ....|+...-.+.++.
T Consensus 80 Ql~~~--~g~iLA~ye~n~rDfL 100 (140)
T PF14909_consen 80 QLVPP--AGEILAYYEENTRDFL 100 (140)
T ss_pred EEeCC--CCcEEEEEeccccceE
Confidence 53332 2345555555555544
No 315
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=29.91 E-value=1.3e+02 Score=30.37 Aligned_cols=39 Identities=15% Similarity=0.346 Sum_probs=27.4
Q ss_pred EeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeC
Q 002002 41 RRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYND 80 (983)
Q Consensus 41 ~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~ 80 (983)
.-|.++....+|.|+|+|.+.+.. .......|.|.++|-
T Consensus 54 ~~~sv~~~~k~p~f~deiKi~LP~-~l~~~~HLlFtf~hv 92 (178)
T cd08679 54 EYTSVVYYHKNPVFNDEIKIQLPA-DLTPQHHLLFTFYHV 92 (178)
T ss_pred eEEEEEEcCCCCCCceeEEEecCC-ccCCCeEEEEEEEcc
Confidence 334445445899999999998843 222577899999863
No 316
>cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast. BUD2 has sequence similarity to the catalytic domain of RasGAPs, and stimulates the hydrolysis of BUD1-GTP to BUD1-GDP. Elimination of Bud2p activity by mutation causes a random budding pattern with no growth defect. Overproduction of Bud2p also alters the budding pattern.
Probab=29.89 E-value=55 Score=37.47 Aligned_cols=44 Identities=20% Similarity=0.263 Sum_probs=27.9
Q ss_pred ccEEEEEECccceecCCeeeEEEEceecCCcceeeeEEEEEEEEe
Q 002002 89 FLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQIKGEIGLKVYYI 133 (983)
Q Consensus 89 ~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~s~~~G~l~l~i~~~ 133 (983)
.+|.+.|++..+...+.....||++......+.-.|.+ +++.|.
T Consensus 1 ~~G~v~i~~~~~~~~~~~~e~w~~i~~~~~~~~~~~~l-lk~~~~ 44 (395)
T cd05137 1 LVGRIDITLEMILDRGLDKETWLPIFDVDNKSVGEGLI-IKVSSE 44 (395)
T ss_pred CeeEEEeehhhhccCCCCceeeeccccCCCCCcCcceE-EEEEee
Confidence 36777777777554556667777776655444344655 566654
No 317
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=29.01 E-value=2.7e+02 Score=28.22 Aligned_cols=64 Identities=13% Similarity=0.123 Sum_probs=41.8
Q ss_pred EEEEeeeecCCCCCeeceEEEEEEec---CCCEEEEEEEeCCCCCCcC-CCCCCCCceeEEEEEEccc
Q 002002 624 KWVRTRTILDRFNPRWNEQYTWDVYD---PCTVLTIGVFDNGRYKRDE-AGKPGKDVRVGKIRVRLST 687 (983)
Q Consensus 624 ~~~rT~~~~~t~nP~Wne~~~~~v~~---~~~~l~i~v~D~d~~~~~~-~~~~~~d~~lG~~~i~l~~ 687 (983)
....|.+...+-+|.|+|++-+.+.- +..-|.|+.|+-+-....+ .........+|-.-+||-+
T Consensus 56 ~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 56 TSAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred eEEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 57788899999999999999988753 2337999999876321000 0001123467777777655
No 318
>PRK09458 pspB phage shock protein B; Provisional
Probab=28.63 E-value=2e+02 Score=24.37 Aligned_cols=20 Identities=30% Similarity=0.539 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHhh-hhccccc
Q 002002 827 TILVHVLLVAVVL-SLRFRYR 846 (983)
Q Consensus 827 s~~~~~~~~~~v~-~~~y~~~ 846 (983)
.+++|++|+..+| ..+|+.+
T Consensus 9 PliiF~ifVaPiWL~LHY~sk 29 (75)
T PRK09458 9 PLTIFVLFVAPIWLWLHYRSK 29 (75)
T ss_pred hHHHHHHHHHHHHHHHhhccc
Confidence 4566777877778 4467654
No 319
>KOG4111 consensus Translocase of outer mitochondrial membrane complex, subunit TOM22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.99 E-value=1.4e+02 Score=28.22 Aligned_cols=66 Identities=21% Similarity=0.334 Sum_probs=35.0
Q ss_pred CCCccccccCCCCCCCCcHHHHHHHHHHHHH-HHHHHHHHHHHH-hhhHhHhhhccccChhhHHHHHHHHHHH
Q 002002 864 GPDELDEEFDGFPTSRPSEVVRIRYDRLRAL-AGRAQTLLGDVA-AQGERLEALFNWRDPRATWIFVVLCLVA 934 (983)
Q Consensus 864 ~~~~~~~e~d~~~~~~~~~~~~~r~~~l~~~-~~~vQ~~~~~~a-~~~Er~~~l~~w~~p~~t~~~~~~~~~~ 934 (983)
..|+.||++|. ++.+.+-+|+-.|.+| -..+-+.++..| +...=+++++.++-- +.|++.+..++.
T Consensus 28 ~~d~~de~dd~----e~dETi~eRi~gLkEivp~g~R~~i~~~~~~av~~~kk~~~fsg~-a~Wi~tTt~lIL 95 (136)
T KOG4111|consen 28 ANDDVDEGDDS----EEDETILERIWGLKEIVPQGRRSAIGATAGDAVFVVKKLYSFSGK-AAWIATTTFLIL 95 (136)
T ss_pred cccccccccCC----CcchhHHHHHHhhHhhcchhhhhhhhhcchhHHHHHHHHHHhccc-hhHHHHHHHHHH
Confidence 44666666554 3678899999999763 333333443322 233445555555542 234444433333
No 320
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=27.95 E-value=1.9e+02 Score=25.20 Aligned_cols=33 Identities=9% Similarity=0.157 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHhhhHhHhhhccccChhhH
Q 002002 892 RALAGRAQTLLGDVAAQGERLEALFNWRDPRAT 924 (983)
Q Consensus 892 ~~~~~~vQ~~~~~~a~~~Er~~~l~~w~~p~~t 924 (983)
..-+...+..-......-.+++.-+-|+.=...
T Consensus 37 ~~kt~~L~~~a~~F~k~a~~l~r~~~~~~~k~~ 69 (89)
T PF00957_consen 37 EDKTEELSDNAKQFKKNAKKLKRKMWWRNYKLY 69 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555666666777777878765443
No 321
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=27.94 E-value=3.1e+02 Score=32.56 Aligned_cols=111 Identities=19% Similarity=0.338 Sum_probs=75.3
Q ss_pred EEEEEEEEeecCCC-CCCCCcEEEEEEcCeeeeeeec-CC-CccceEEEEeecCCCCCeEEEEEEcCCcCCccccCCcee
Q 002002 274 FLYVRVLKAKRAGN-VSNGSLYAKLVIGTHSIKTKSQ-AD-KDWDQVFAFDKEGLNSTSLEVSVWSEEKKENEECTENCL 350 (983)
Q Consensus 274 ~L~V~v~~a~~L~~-~~~~dPyv~v~~~~~~~kTk~~-~~-P~Wne~f~f~~~~~~~~~l~v~V~d~d~~~~d~~~d~~l 350 (983)
-+.|.|.+..+|.. ..+-=.|+...+.|.+..|... .. |.|+..-.|....+ -..+.|.++...++- -...|.-+
T Consensus 342 smevvvmevqglksvapnrivyctmevegeklqtdqaeaskp~wgtqgdfstthp-lpvvkvklftestgv-laledkel 419 (1218)
T KOG3543|consen 342 SMEVVVMEVQGLKSVAPNRIVYCTMEVEGEKLQTDQAEASKPKWGTQGDFSTTHP-LPVVKVKLFTESTGV-LALEDKEL 419 (1218)
T ss_pred eeeEEEeeeccccccCCCeeEEEEEEecccccccchhhhcCCCCCcCCCcccCCC-CceeEEEEEeeccee-EEeechhh
Confidence 36788888888863 2344579999999999999888 66 99999999987776 677888888764311 01256667
Q ss_pred EEEEEeccccCCCCCCCCCCCCceEEcccCC-C--CCceEEEEEEe
Q 002002 351 GTVLFDLQEVPKRVPPDSPLAPQWYSLESEK-L--PGNDVMLAVWI 393 (983)
Q Consensus 351 G~~~i~l~~l~~~~~~~~~l~~~w~~L~~~~-~--~~g~i~l~~~~ 393 (983)
|.+.+. ..++++-.+.|+...-+. . ..-.|.+++.+
T Consensus 420 grvil~-------ptpns~ks~ewh~mtvpknsqdqdlkiklavrm 458 (1218)
T KOG3543|consen 420 GRVILQ-------PTPNSAKSPEWHTMTVPKNSQDQDLKIKLAVRM 458 (1218)
T ss_pred CeEEEe-------cCCCCcCCccceeeecCCCCcCccceEEEEEec
Confidence 777654 334556667899876552 1 12345555543
No 322
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=27.70 E-value=1.6e+02 Score=29.89 Aligned_cols=41 Identities=10% Similarity=0.177 Sum_probs=31.6
Q ss_pred eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeC
Q 002002 39 QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYND 80 (983)
Q Consensus 39 ~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~ 80 (983)
....|.+...+.+|.|+|++-+.+... ......|.|+.|+-
T Consensus 56 ~~~~s~V~yh~k~P~f~dEiKI~LP~~-l~~~hHLlFtFyHv 96 (185)
T cd08697 56 TSAYAAVLHHNQNPEFYDEIKIELPTQ-LHEKHHLLFTFYHV 96 (185)
T ss_pred eEEEEEEEEcCCCCccceeEEEecCCc-CCCCeeEEEEEEee
Confidence 456788888899999999998887542 23467888999874
No 323
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=27.59 E-value=1.7e+02 Score=33.30 Aligned_cols=108 Identities=18% Similarity=0.218 Sum_probs=60.2
Q ss_pred CCeEEEEEECCeEEeeeCcC---CC-CCC-ee---eeEEEEEeeecCCCC--------CceEEEEEEeCCCC-----CCC
Q 002002 28 ASAYVIVDFDGQRRRTKTKF---RD-LNP-QW---DERLEFLVHDAESMP--------TEILEINLYNDKKT-----GKR 86 (983)
Q Consensus 28 ~dPyv~v~~~~~~~~T~~~~---~t-~nP-~W---nE~f~f~v~~~~~l~--------~~~L~v~V~~~~~~-----~~~ 86 (983)
+.-||+|++.+--.+|..+. .+ .+| .- --.|++.-.+.+.+. ...|+|.||.-... .++
T Consensus 36 spCfC~IrL~~fP~Qta~vPLi~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~i~VY~Gr~G~tCGv~~~ 115 (460)
T PF06219_consen 36 SPCFCEIRLKGFPSQTAPVPLISSSEPEPPDSHSLAASFHLDKSDLRRLLAKPCFYSPRPCLEISVYTGRRGSTCGVGNS 115 (460)
T ss_pred CCeEEEEecCCCCccceeeeeccCCCCCCCCcCCcceEEecCHHHHHHHhCCCccccCCceEEEEEEECCCCCccccccc
Confidence 45599999988444444432 11 111 11 123444322211111 24699999953321 125
Q ss_pred CCccEEEEEECccceecCC---eeeEEEEceecCCcc--eeeeEEEEEEEEecC
Q 002002 87 STFLGKVKIAGSTFAKVGS---ESSVYYPLEKRSVFS--QIKGEIGLKVYYIDE 135 (983)
Q Consensus 87 d~~lG~~~i~l~~l~~~~~---~~~~w~~L~~~~~~s--~~~G~l~l~i~~~~~ 135 (983)
..+||.++++++--...+. ...-|..+-+....+ ....+|+|.+...++
T Consensus 116 ~klLG~v~vpldl~~ae~kp~v~hnGWi~iGk~~~~~~~~~~aeLHl~Vr~EpD 169 (460)
T PF06219_consen 116 GKLLGKVRVPLDLKWAEGKPVVFHNGWISIGKNKQGSGKSPSAELHLVVRAEPD 169 (460)
T ss_pred ceEEEEEEEEeccccccCCeeEEEccceecCCCCCCCCCCCcceEEEEEeccCC
Confidence 6899999999984322222 245799997775322 245789998876543
No 324
>PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER). Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A.
Probab=27.43 E-value=20 Score=35.49 Aligned_cols=29 Identities=31% Similarity=0.575 Sum_probs=0.0
Q ss_pred HhhhccccChhhHHHHHHHHHHHHHHHhh
Q 002002 912 LEALFNWRDPRATWIFVVLCLVASLVFYA 940 (983)
Q Consensus 912 ~~~l~~w~~p~~t~~~~~~~~~~~~~l~~ 940 (983)
+++++.|+||..|+....++.++-.++.+
T Consensus 1 V~dll~W~~~~~S~~v~~~~~~~~~l~~~ 29 (169)
T PF02453_consen 1 VADLLLWRDPKKSGIVFGAILLFWLLFWL 29 (169)
T ss_dssp -----------------------------
T ss_pred CceeeEecCCCchHHHHHHHHHHHHHHHH
Confidence 46899999999999877766664344433
No 325
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=26.58 E-value=1.8e+02 Score=31.47 Aligned_cols=70 Identities=16% Similarity=0.203 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHhHhhhccccChhhHHHHHHHHHHHHHHHhhhhhhhhhhheeeecccCC
Q 002002 883 VVRIRYDRLRALAGRAQTLLGDVAAQGERLEALFNWRDPRATWIFVVLCLVASLVFYAVPFKLFVLGSGFYYLRHP 958 (983)
Q Consensus 883 ~~~~r~~~l~~~~~~vQ~~~~~~a~~~Er~~~l~~w~~p~~t~~~~~~~~~~~~~l~~vp~r~~~~~~g~~~~r~p 958 (983)
.++.-++++..+..+++...+.+.+..+...+..+-+. .-.+-.+.+.++ .|+|+-+|.-+||.|.---|
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----n~~m~~LT~~t~--iflPlt~i~g~fGMN~~~~p 262 (292)
T PF01544_consen 193 YLRDLLDRIERLLERAESLRERLESLQDLYQSKLSNRQ----NRVMKVLTIVTA--IFLPLTFITGIFGMNFKGMP 262 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHH----HHHHHHHHHHHH--HHHHHHHHTTSTTS-SS---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH--HHHHHHHHHHHhhCCccCCC
Confidence 35556666666777777777777777777777777763 222333333333 44899999999998875334
No 326
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=25.67 E-value=1.2e+02 Score=25.89 Aligned_cols=21 Identities=24% Similarity=0.586 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHhh-hhcccccc
Q 002002 827 TILVHVLLVAVVL-SLRFRYRQ 847 (983)
Q Consensus 827 s~~~~~~~~~~v~-~~~y~~~~ 847 (983)
.+++|++|+..+| ..+|+.+.
T Consensus 9 Pliif~ifVap~wl~lHY~~k~ 30 (75)
T TIGR02976 9 PLIIFVIFVAPLWLILHYRSKR 30 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 4556777777777 45566543
No 327
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=24.85 E-value=2.2e+02 Score=28.66 Aligned_cols=40 Identities=13% Similarity=0.186 Sum_probs=30.0
Q ss_pred eEEEeeeeeeccCCCCCCCCcccceEEEEecCCC--CCcEEEEEEeCc
Q 002002 463 QLFKTGRTSVGLSPSSSANPTWNEDLVFVAAEPF--EPFLVVTVEDVT 508 (983)
Q Consensus 463 ~~~rT~~~~~~~~~~~t~nP~wne~f~f~~~~~~--~~~L~i~V~D~d 508 (983)
..+.|.+.. .+.+|.|+|++-+.++... ..+|.|+.++..
T Consensus 54 ~~~~S~V~y------Hnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs 95 (179)
T cd08696 54 TEAYTAVTY------HNKSPDFYDEIKIKLPADLTDNHHLLFTFYHIS 95 (179)
T ss_pred eeEEEEEEE------eCCCCcccceEEEEcCCCCCCCeEEEEEEEEee
Confidence 345677665 5789999999988776554 458999998865
No 328
>PF03540 TFIID_30kDa: Transcription initiation factor TFIID 23-30kDa subunit; InterPro: IPR003923 Transcription initiation factor TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors. The complex includes TATA binding protein (TBP) and various TBP-associated factors (TAFS). TFIID a bona fide RNA polymerase II-specific TATA-binding protein-associated factor (TAF) and is essential for viability []. TFIID acts to nucleate the transcription complex, recruiting the rest of the factors through a direct interaction with TFIIB. The TBP subunit of TFIID is sufficient for TATA-element binding and TFIIB interaction, and can support basal transcription. The protein belongs to the TAF2H family.; GO: 0006352 transcription initiation, DNA-dependent, 0005634 nucleus
Probab=24.62 E-value=51 Score=25.64 Aligned_cols=13 Identities=31% Similarity=0.751 Sum_probs=11.1
Q ss_pred CCChHHHHHhhcC
Q 002002 771 PPLGQEVVQFMLD 783 (983)
Q Consensus 771 p~l~~~vv~~~~d 783 (983)
|.|+.+|++|.+.
T Consensus 1 P~IPD~v~~~yL~ 13 (51)
T PF03540_consen 1 PTIPDEVTDYYLE 13 (51)
T ss_pred CCCCHHHHHHHHH
Confidence 7889999999883
No 329
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=23.78 E-value=6.1e+02 Score=23.78 Aligned_cols=92 Identities=9% Similarity=0.108 Sum_probs=48.5
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCeEEEEEECCeEE-eeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCCCC
Q 002002 8 KLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRR-RTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKTGKR 86 (983)
Q Consensus 8 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~-~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~~~ 86 (983)
.|.++=+.-.+++..+..|.|.||++|.-++... .|........-.=...+.+.+...-. ....+.|.+|+.......
T Consensus 5 ~l~L~~I~l~~iP~f~~~~gc~p~i~I~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~GDV~i~~~~~~~~~~~ 83 (134)
T PF10409_consen 5 PLFLKSIILHGIPNFNSGGGCRPYIEIYNGGKKVFSTSKSYEDPKSYEQDSVIIELPKNLP-LRGDVLIKFYHKRSSSMS 83 (134)
T ss_dssp EEEEEEEEEES-TTSTTSSCCTEEEEEEETTEEEEETCCTCCCCCEEETTCEEEEEEEEEE-EESEEEEEEEECETTECC
T ss_pred eEEEEEEEEECCCccCCCCCEEEEEEEECCCccEEEeccceeccccccceeEEEEeCCCCe-EeCCEEEEEEeCCCcccc
Confidence 4555555556667666677899999998877554 34433322221111233333332111 145677888875522224
Q ss_pred CCccEEEEEECccc
Q 002002 87 STFLGKVKIAGSTF 100 (983)
Q Consensus 87 d~~lG~~~i~l~~l 100 (983)
++.+.++.+...-+
T Consensus 84 ~~~~f~~~FnT~Fi 97 (134)
T PF10409_consen 84 KEKMFRFWFNTGFI 97 (134)
T ss_dssp CEEEEEEEEEGGGS
T ss_pred cCeEEEEEEeeeee
Confidence 55666666664443
No 330
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=23.69 E-value=2.1e+02 Score=35.63 Aligned_cols=111 Identities=19% Similarity=0.254 Sum_probs=0.0
Q ss_pred EEEEEceeccccccccCCCCCCCCCcEEEEEECC--------EEEEeeeecCCCCCeeceEEEEEEe----cCCCEEEEE
Q 002002 590 LEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP--------KWVRTRTILDRFNPRWNEQYTWDVY----DPCTVLTIG 657 (983)
Q Consensus 590 L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~--------~~~rT~~~~~t~nP~Wne~~~~~v~----~~~~~l~i~ 657 (983)
++++++.+.++ +. .-..|-+|.|+.|- +...|.-+..+.+|.||+...|+++ .+...|-|.
T Consensus 345 frI~l~~is~~------n~-~~t~~~kV~V~~~lyhG~e~Lc~~~sTs~v~~~~~~~Wn~~leFDI~i~DLPr~ArLc~~ 417 (1076)
T KOG0904|consen 345 FRIKLVGISKV------NL-PETVDLKVFVEAGLYHGTEVLCKTRSTSEVPGCSFPLWNEWLEFDIYIKDLPRMARLCLA 417 (1076)
T ss_pred eEEEEeecccc------CC-CcccceEEEEEEEEEECCeehhcccccCCCCCccchhccceeEeeeecCCCChhhhheee
Q ss_pred EEeC----------------CCCCCcCCCCCCCCceeEEEEEEccc----ccCCCeEEEEEEeeecCCCC-CccceEEE
Q 002002 658 VFDN----------------GRYKRDEAGKPGKDVRVGKIRVRLST----LDTNRVYLNSYSLTVLLPGG-AKKMGEIE 715 (983)
Q Consensus 658 v~D~----------------d~~~~~~~~~~~~d~~lG~~~i~l~~----l~~~~~~~~~~~L~~~~~~g-~~~~G~l~ 715 (983)
||-- +.-+ .+..||.+.+.|-+ |..|+..-+.|+........ ....|++.
T Consensus 418 i~~v~~~~~s~~~s~~~~~kk~k~--------~~~plaWvN~~lfD~kd~LrtG~~~Lh~W~~~p~~~~e~l~p~Gt~~ 488 (1076)
T KOG0904|consen 418 IYAVKAKAKSKKNSAESTKKKSKK--------EHCPLAWVNLMLFDHKDQLRTGEYVLHMWPSVPDELGELLNPKGTVR 488 (1076)
T ss_pred eeEeechhccccccchhhhhcccc--------ccCceEEEeeeeeechhhhhcCceEEEecCCCCchhhhhcCCCCccc
No 331
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=20.10 E-value=1.6e+02 Score=28.01 Aligned_cols=32 Identities=22% Similarity=0.311 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHhHhhhcc
Q 002002 886 IRYDRLRALAGRAQTLLGDVAAQGERLEALFN 917 (983)
Q Consensus 886 ~r~~~l~~~~~~vQ~~~~~~a~~~Er~~~l~~ 917 (983)
.+.+.|.....++|..|.++...+|++.+++.
T Consensus 87 ~kv~els~~L~~~~~lL~~~v~~ie~LN~~LP 118 (131)
T PF10158_consen 87 EKVNELSQQLSRCQSLLNQTVPSIETLNEILP 118 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 35777888999999999999999999999875
Done!