BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 002003
         (983 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1GZJ|A Chain A, Structure Of Thermoascus Aurantiacus Family 5
           Endoglucanase
 pdb|1GZJ|B Chain B, Structure Of Thermoascus Aurantiacus Family 5
           Endoglucanase
          Length = 304

 Score = 30.4 bits (67), Expect = 4.5,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 5/51 (9%)

Query: 746 WRELASAFANDKTLILLNSTNQRSLAQTLVLSAY-----GMRNSESSNQYV 791
           W+ +AS FA++  +I   +     + QTLVL+       G+R++ +++QY+
Sbjct: 112 WKTVASQFASNPLVIFDTNNEYHDMDQTLVLNLNQAAIDGIRSAGATSQYI 162


>pdb|3VYW|A Chain A, Crystal Structure Of Mnmc2 From Aquifex Aeolicus
 pdb|3VYW|B Chain B, Crystal Structure Of Mnmc2 From Aquifex Aeolicus
 pdb|3VYW|C Chain C, Crystal Structure Of Mnmc2 From Aquifex Aeolicus
 pdb|3VYW|D Chain D, Crystal Structure Of Mnmc2 From Aquifex Aeolicus
          Length = 308

 Score = 30.0 bits (66), Expect = 6.0,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 22/36 (61%)

Query: 307 VWLLNLYSALRQKFSSEGYWLDCPIAVSARKLIVQL 342
           +W L+  S ++++   +GYW+    ++S RK ++ L
Sbjct: 203 LWTLDFLSLIKERIDEKGYWVSYSSSLSVRKSLLTL 238


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.133    0.393 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,997,048
Number of Sequences: 62578
Number of extensions: 905854
Number of successful extensions: 1838
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1837
Number of HSP's gapped (non-prelim): 2
length of query: 983
length of database: 14,973,337
effective HSP length: 108
effective length of query: 875
effective length of database: 8,214,913
effective search space: 7188048875
effective search space used: 7188048875
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)