Query 002003
Match_columns 983
No_of_seqs 213 out of 404
Neff 7.7
Searched_HMMs 46136
Date Thu Mar 28 14:19:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002003.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002003hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1410 Nuclear transport rece 100.0 7E-163 2E-167 1343.6 65.0 846 25-979 1-890 (1082)
2 KOG4541 Nuclear transport rece 100.0 5E-52 1.1E-56 454.5 31.1 505 448-980 3-585 (748)
3 COG5101 CRM1 Importin beta-rel 100.0 1.7E-27 3.6E-32 265.1 59.2 243 33-347 14-264 (1053)
4 KOG4541 Nuclear transport rece 99.9 8.8E-22 1.9E-26 217.4 30.0 516 290-866 1-532 (748)
5 KOG2020 Nuclear transport rece 99.8 3.6E-19 7.8E-24 218.3 29.9 346 33-470 11-368 (1041)
6 KOG2022 Nuclear transport rece 99.7 4.7E-10 1E-14 132.2 63.2 150 32-186 6-163 (982)
7 KOG2021 Nuclear mRNA export fa 99.6 8.1E-10 1.7E-14 127.8 51.5 261 32-365 2-275 (980)
8 KOG2171 Karyopherin (importin) 99.4 8.7E-08 1.9E-12 117.2 53.8 147 33-187 4-152 (1075)
9 KOG1991 Nuclear transport rece 99.1 0.00012 2.7E-09 88.7 59.5 176 23-223 1-189 (1010)
10 KOG2023 Nuclear transport rece 98.9 5.1E-06 1.1E-10 96.0 32.6 585 33-886 10-651 (885)
11 PF08389 Xpo1: Exportin 1-like 98.8 5.4E-08 1.2E-12 96.5 13.5 147 123-339 1-148 (148)
12 PF03810 IBN_N: Importin-beta 98.6 2.6E-07 5.6E-12 81.1 8.5 67 51-117 1-77 (77)
13 KOG1241 Karyopherin (importin) 98.5 0.0092 2E-07 71.1 44.3 138 41-185 9-162 (859)
14 KOG2081 Nuclear transport regu 98.4 0.0013 2.7E-08 76.2 34.1 131 49-188 2-132 (559)
15 KOG1992 Nuclear export recepto 97.9 0.012 2.6E-07 70.7 29.5 162 48-223 22-193 (960)
16 COG5656 SXM1 Importin, protein 97.9 0.13 2.9E-06 61.4 52.6 142 36-182 7-155 (970)
17 KOG1993 Nuclear transport rece 97.2 0.0071 1.5E-07 72.2 16.4 156 48-222 17-181 (978)
18 COG5657 CSE1 CAS/CSE protein i 96.4 0.2 4.3E-06 61.4 20.1 132 45-185 18-155 (947)
19 KOG2274 Predicted importin 9 [ 93.2 30 0.00065 43.3 52.0 137 39-184 10-159 (1005)
20 COG5215 KAP95 Karyopherin (imp 71.3 2.4E+02 0.0052 34.0 47.9 119 35-161 6-142 (858)
21 PF03991 Prion_octapep: Copper 65.7 3.1 6.7E-05 20.1 0.6 7 10-16 2-8 (8)
22 PF10521 DUF2454: Protein of u 61.2 78 0.0017 35.0 11.5 172 137-377 107-278 (282)
23 PF03224 V-ATPase_H_N: V-ATPas 51.2 2E+02 0.0044 32.2 12.9 86 52-139 92-179 (312)
24 PF06738 DUF1212: Protein of u 41.8 2.9E+02 0.0064 28.3 11.5 102 20-133 59-161 (193)
25 COG1698 Uncharacterized protei 37.0 1.1E+02 0.0024 27.5 6.0 68 21-88 8-81 (93)
26 PF11864 DUF3384: Domain of un 35.9 8.2E+02 0.018 29.1 16.3 38 867-904 147-184 (464)
27 PF00790 VHS: VHS domain; Int 32.6 2.1E+02 0.0046 27.9 8.2 98 34-135 9-114 (140)
28 PF11277 Med24_N: Mediator com 32.0 1.3E+03 0.028 30.3 16.8 106 210-351 122-228 (990)
29 cd03561 VHS VHS domain family; 30.1 4E+02 0.0087 25.7 9.6 60 75-136 48-109 (133)
30 KOG1062 Vesicle coat complex A 29.6 3.7E+02 0.0079 33.9 10.8 87 823-911 220-308 (866)
31 PF05536 Neurochondrin: Neuroc 29.3 1.1E+03 0.024 28.7 19.5 204 716-942 113-326 (543)
32 PF01602 Adaptin_N: Adaptin N 29.1 2.6E+02 0.0057 33.5 10.0 90 75-180 90-179 (526)
33 PF10189 DUF2356: Conserved pr 28.8 1.5E+02 0.0033 31.6 6.7 72 817-888 99-179 (230)
34 cd00020 ARM Armadillo/beta-cat 28.8 2.5E+02 0.0055 25.4 7.9 107 64-181 8-119 (120)
35 PF12612 TFCD_C: Tubulin foldi 28.3 1.2E+02 0.0026 31.5 5.9 53 853-906 128-182 (193)
36 PF10487 Nup188: Nucleoporin s 28.2 1.5E+03 0.032 29.8 24.0 47 857-903 832-889 (931)
37 PF13646 HEAT_2: HEAT repeats; 28.1 2.5E+02 0.0054 24.2 7.2 84 35-134 1-87 (88)
38 KOG2122 Beta-catenin-binding p 27.1 1.1E+03 0.024 32.3 14.5 94 46-144 209-329 (2195)
39 PF04821 TIMELESS: Timeless pr 26.1 1.7E+02 0.0037 32.1 6.9 88 855-942 44-149 (266)
40 PTZ00429 beta-adaptin; Provisi 25.5 1.3E+03 0.028 29.5 15.1 114 54-182 91-208 (746)
41 PF08569 Mo25: Mo25-like; Int 23.6 2.6E+02 0.0057 31.8 7.9 128 713-880 134-265 (335)
42 PF14911 MMS22L_C: S-phase gen 23.3 1.2E+03 0.026 27.0 13.1 106 737-852 7-120 (373)
43 PF05804 KAP: Kinesin-associat 21.8 1.7E+03 0.037 28.2 16.2 60 852-911 576-653 (708)
44 KOG0946 ER-Golgi vesicle-tethe 21.0 1.5E+03 0.033 28.8 13.6 188 33-256 22-243 (970)
45 KOG2023 Nuclear transport rece 20.7 1E+03 0.022 29.6 11.9 204 684-907 382-614 (885)
46 smart00288 VHS Domain present 20.4 7E+02 0.015 24.1 9.2 22 75-96 48-69 (133)
No 1
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.3e-163 Score=1343.55 Aligned_cols=846 Identities=17% Similarity=0.243 Sum_probs=758.0
Q ss_pred hhhHHHHHHHHHHHHHHhhCCCC---HHHHHHHHHhhhcCCChHHHHHHHHhcCCchhHHHHHHHHHHHHHhhccCCCCH
Q 002003 25 LAKLQSIMHSIEIACSSIQMHVN---PAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTA 101 (983)
Q Consensus 25 ~~~l~~~~~~lE~~~~~ly~~~~---r~~Ae~~L~~f~~~~~~~~~c~~ILe~S~~~y~~f~A~~~L~~~v~~~W~~l~~ 101 (983)
|++| ++||.+|+.+|++.| |.+||+.|.+|..+|+++++|+.||++++.||.++.|+++|.+.+.+.- .+|.
T Consensus 1 m~sL----aqLe~lCk~LY~s~D~~~R~~AE~~L~e~s~speclskCqlll~~gs~pYs~mlAst~L~Klvs~~t-~lpl 75 (1082)
T KOG1410|consen 1 MQSL----AQLESLCKDLYESTDPTARHRAEKALAELSESPECLSKCQLLLERGSYPYSQMLASTCLMKLVSRKT-PLPL 75 (1082)
T ss_pred CccH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHcCCC-CCcH
Confidence 3466 999999999999865 9999999999999999999999999999999999999999999999974 7999
Q ss_pred HHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhhccCCCCCC---chhhHHHHHHHHhcccCCchhHHHHHHHHH
Q 002003 102 DEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSS---DKEAFFSQVHQAVLGIHGVDTQFIGINFLE 178 (983)
Q Consensus 102 ~~r~~lr~~ll~yl~~~~~~l~~~V~~~l~~~la~I~K~gW~d~~~~---~~~~~~~~v~~~l~~~~s~~~~~igl~iL~ 178 (983)
+||.+||+|++||+.+++|++++||+..++|++|+|+|+||+|.++. +|+ .+.++.+|++. ++.+|++||+.||+
T Consensus 76 ~qrldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd-~v~~~~kfl~~-~~ve~~~igv~iLs 153 (1082)
T KOG1410|consen 76 EQRLDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRD-PVDDVTKFLQM-DNVEHCIIGVQILS 153 (1082)
T ss_pred HHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhh-hHHHHHHHhcc-CchHHHHHHHHHHH
Confidence 99999999999999999889999999999999999999999997654 364 88999999985 67999999999999
Q ss_pred HHHhhhCCCCCCCCCCChHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHhcccccc
Q 002003 179 SLVSEFSPSTSSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWDFQ 258 (983)
Q Consensus 179 ~lv~Efs~~~ss~~gl~~~~Hrk~~~sf~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~LswdF~ 258 (983)
+||+||++.+. +.|..+|||.+.+|||+.|++||.+++.+|+...+..++. ..+.+++.++|++..+||+|||+
T Consensus 154 qLvqemN~~~~---~~p~tkHRkias~FRD~sL~~vf~laln~L~~~~~~nlnd---~~q~~L~~~vL~L~l~Cl~FDfi 227 (1082)
T KOG1410|consen 154 QLVQEMNQADG---MDPSTKHRKIASSFRDDSLFDVFSLALNLLKDNVDLNLND---RAQLGLLMQVLKLNLNCLNFDFI 227 (1082)
T ss_pred HHHHHhhCCCC---CCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccCccc---HhHhhHHHHHHHHHhhhcccccc
Confidence 99999999876 8899999999999999999999999999999877433322 13668999999999999999999
Q ss_pred cCCCCCcccccccccccccccCCCCcccccccCCCccchHhhcccchHHHHHHHHHHHHhccccCCCCCCccchHHHHHH
Q 002003 259 FDTSGRKISINVFSAGVRTETSSSKRSECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKL 338 (983)
Q Consensus 259 ~~~~d~~~~~~~~~~~~~~~~~~~~s~~~~t~~~p~~Wr~~l~~~~~l~llf~ly~~lr~~~~~~~~~~~~~l~~~al~c 338 (983)
|++.||+ +||.+|||+|++||..|.|++++++||++|..+ ||+++..+++|
T Consensus 228 Gss~DEs------------------sed~ctVQIPTsWRs~f~d~stlqlfFdly~sl-----------p~~~S~~alsc 278 (1082)
T KOG1410|consen 228 GSSTDES------------------SEDLCTVQIPTSWRSSFLDSSTLQLFFDLYHSL-----------PPELSELALSC 278 (1082)
T ss_pred ccccccc------------------cccccceecCcHHHHHhcCchHHHHHHHHhccC-----------CchhhHHHHHH
Confidence 9999998 999999999999999999999999999999884 68899999999
Q ss_pred HHHHHhccCCccCCCChhhHHHHHHHHHHhhhhhcCChhhhHHHhhhCCCh-hhHHHHHHHHHHHHhhcChhhHHHhhhc
Q 002003 339 IVQLCSLTGTVFPSDNGKMQEHHLLQLLSGILEWVDPPDVVAQAIESGKSE-SEMLDGCRALLSIATVTTPFVFDRLLKS 417 (983)
Q Consensus 339 L~qLaSl~~~~f~~~~~~~r~~yl~~~l~~~~~il~~~~~~~~~~~~gl~~-~~~~e~cr~L~rL~~~~~~~~l~~l~~s 417 (983)
|+|+||+||++|++. +|.+|+++++.|++.|+++|. |+++ .|||||||+|+||++||++.++..+.+
T Consensus 279 lvqlASvRRsLFN~a---eRa~yl~~Lv~Gvk~il~np~--------~LsD~~nyHeFCRllaRlktNYQL~ELv~v~~- 346 (1082)
T KOG1410|consen 279 LVQLASVRRSLFNGA---ERAKYLQHLVEGVKRILENPQ--------GLSDPANYHEFCRLLARLKTNYQLGELVKVEC- 346 (1082)
T ss_pred HHHHHHHHHHHhCCH---HHHHHHHHHHHHHHHHHhCCc--------CCCCcchHHHHHHHHHHHHhhhhhHhhhccCC-
Confidence 999999999999665 499999999999999999875 8977 999999999999999998777776542
Q ss_pred cCchhhHHHHHHHHHHHHHHHhhcccccCcccHHHHHHHHHHHHHhhhcccccCCCCCCChhhhhhHHHHHHHHHHhhhc
Q 002003 418 IRPFGTLTLLSNLMCEVVKVLMMNNTEEGTWSWEARDILLDTWTTLLVSLDSTGRNVVLPLEVRNAAASLFALIVESELK 497 (983)
Q Consensus 418 ~~~~~~l~~L~~Lt~~~i~~~~~~~~~~~~~~~es~~~LL~~W~~lv~~~~~~~~~~~~p~~l~~~~~~I~~~yi~srL~ 497 (983)
|-+. +.++++||+.+++.|+|+++|++|||..|++||+|+||+|++ .|+.+.+|+|+|+++||.||++
T Consensus 347 -----Y~e~-----irLiAeFTv~SLq~wefa~nSvyyLlt~WqRmvaSVPyvk~~--~phlLd~y~PeIt~afi~SRl~ 414 (1082)
T KOG1410|consen 347 -----YPEV-----IRLIAEFTVTSLQHWEFAPNSVYYLLTLWQRMVASVPYVKNT--EPHLLDTYCPEITKAFITSRLQ 414 (1082)
T ss_pred -----cHHH-----HHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHhcCCcccCC--ChHHHhhhcHHHHHHHHHHHhh
Confidence 3332 678999999999999999999999999999999999999875 6888999999999999999999
Q ss_pred cccccccCCCcccchhhccHHHHHHHHHHHHHHHHHcHhhhHHHHHHHHHHHHHHHhcc--cCCCCc--chhhH-HHHHH
Q 002003 498 VASASAMDDNGEFNYLQASISAMDERLSSYALIARAAIDATVPLLTRLFSERFARLHQG--RGMIDP--TETLE-ELYSL 572 (983)
Q Consensus 498 ~~~~~~~~d~d~de~~e~d~~~~~eqL~~ia~l~R~~~~~t~~lL~~l~~~~~~~l~~~--~~~~~~--~~~~E-~L~WL 572 (983)
.++....|+ -|++.||.....+||++++.||||.|++||.+|+++|++.++.|++. .++.++ ..+.| +|.||
T Consensus 415 sV~~ivrd~---~d~PLdd~~~~~q~le~l~~icRceYEkTc~llvq~fdq~aqsyqe~~~~~s~~~~d~ai~EgrL~Wl 491 (1082)
T KOG1410|consen 415 SVEIIVRDG---LDDPLDDTGAVQQQLEQLATICRCEYEKTCALLVQLFDQNAQSYQELLQNGSANDADIAIQEGRLVWL 491 (1082)
T ss_pred hhheecccC---CCCcchhhHHHHHHHHHhhhhhhhhHhhHHHHHHHHHhhhHHHHHHHhcccCCCchhHHHHhhhhhhh
Confidence 998877544 33456677799999999999999999999999999999999999874 233333 45777 89999
Q ss_pred HHHHHhHhccCCCCCccccchhhhhhhhhhhhhccChH-HHHHHHHHHHHHHhcCccCcccCCCHHHHHHHHHHHHHHHH
Q 002003 573 LLITGHVLADEGEGEIPVVPNAIQTHFVDTIEAAKHPV-VLLCGSIIKFAEWSLDPEARASVFSPRLMEAIVWFLARWSQ 651 (983)
Q Consensus 573 v~i~G~~Lad~~~gE~~~iP~~i~~~~~~~~~~~~d~v-~~L~~~vl~l~~~~l~~~~~~~~~Sp~L~~a~lwFl~~~~~ 651 (983)
|+|+|.++++.+.+ .| .+ ++|.+ ++|+++|+++.... |++.. .....+++.+++|||++|||
T Consensus 492 v~lvgtvV~gk~t~-----------~S---td-~~d~mDgEL~arvlql~nlm-dsr~~-~~~n~rle~ail~f~eqFRk 554 (1082)
T KOG1410|consen 492 VYLVGTVVGGKTTA-----------TS---TD-EHDAMDGELSARVLQLVNLM-DSRLP-LKGNERLELAILHFLEQFRK 554 (1082)
T ss_pred HHHhHHHhcceecc-----------cc---cc-hhhhhhhHHHHHHHHHHHhh-hcccc-hhhhHHHHHHHHHHHHHHHH
Confidence 99999999987642 11 22 44666 99999999999985 76553 44668899999999999999
Q ss_pred hhcCCccccccCCCCcCCCCCccccccchhhHHHhhhcCCCChhhHHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHh
Q 002003 652 TYLMPLEEFRDSSTNLCHDTGYQHQSSTSRKALLSFFGEHNQGKPVLDIIVRISMTTLVSYPGEKDLQELTCNQLLHALV 731 (983)
Q Consensus 652 ~Yl~~~~~~~~~~~~~~~~~~y~~~s~~~~~~L~~~fg~~~~~~~vl~~lv~ki~~nL~~w~~e~~vi~~t~~~LL~~L~ 731 (983)
+|++++.. + +++.|.+ +.+.+|.+ ++..++++||+||.+||++|++.++|+..|+ +||++|+
T Consensus 555 ~YvgDQ~~-r-------sSkvY~r--------l~e~Lgi~-de~~~L~viv~KI~TNLK~w~~~e~vi~~tL-slf~dLs 616 (1082)
T KOG1410|consen 555 AYVGDQIQ-R-------SSKVYAR--------LSEVLGIT-DESDVLGVIVGKILTNLKYWGRNEPVISLTL-SLFNDLS 616 (1082)
T ss_pred HHHHHHHH-H-------HHHHHHH--------HHHHhCCC-chHHHHHHHHHHHHhhcccccCCchHHHHHH-HHHHHHh
Confidence 99999843 3 4556666 88999999 9999999999999999999999999999999 9999999
Q ss_pred ccccchhhhhcchHHHHHHHHhhccc-cccccc-----chhhHHHHHHHHHHhhcCCCchhhhHHHHHHHHHHHHHHHHH
Q 002003 732 RRKNVCVHLVALGSWRELASAFANDK-TLILLN-----STNQRSLAQTLVLSAYGMRNSESSNQYVRDLTRHATAYLVEL 805 (983)
Q Consensus 732 ~~~~~~~~l~~~~~~~~L~~~~~~~~-~~~~l~-----~~~~~~l~~aL~~~~~~~~d~~~~~~~f~~~~~pl~~~~~~l 805 (983)
.|++.+++|+++|+++++++||+++| ||++.. .+.|++||.||+|+ .++|.++++..|++||.||++.|+.+
T Consensus 617 ~GY~~~kkL~kl~~VqfmlnNHT~ehF~FLg~~~~~~~~r~RTTFY~al~rL--l~~d~sede~~fe~fm~PLt~~fe~v 694 (1082)
T KOG1410|consen 617 LGYSAVKKLVKLDAVQFMLNNHTSEHFPFLGINIDLQDMRCRTTFYTALTRL--LMVDLSEDEDMFERFMLPLTDAFEGV 694 (1082)
T ss_pred hhHHHHHHHhcchhhhhHhcccchhhCcccccCccchhhhhHhHHHHHHHHH--HhhcccccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 898876 23468899999999 88888888999999999999999988
Q ss_pred hCCCCcccccCchhHHHHHHHHHHHhhchhhccCCCcH-HHHHHHHHh-hHHHHHHHHHHhccchHHHHHHHHHHHHHHh
Q 002003 806 SGKNDLKNVSQQPDIILLVSCLLERLRGAANATEPRTQ-KAIYEMGFS-VMNPVLLLLEVYKHESAVVYLLLKFVVDWVD 883 (983)
Q Consensus 806 ~~~~~~~~~~~~~~vk~~i~~ll~~LrGia~a~~~~~~-~~lf~~i~~-~l~~l~~l~~~y~~~p~Vv~~iLkff~elv~ 883 (983)
.+..+- +.+.++++|..++|++|||||||.|+++|+. .+||||+|| ++|.+.+.++.|.++|+|++|||||++|+|+
T Consensus 695 ~~~~~n-n~f~ee~vK~~liGL~RDLRGiA~A~~tktsy~~LFdWmYP~~mpllq~~Ve~W~~~p~vtTPiLklmaE~v~ 773 (1082)
T KOG1410|consen 695 LQVFQN-NCFEEEQVKRILIGLCRDLRGIAFASNTKTSYQMLFDWMYPEYMPLLQRAVEKWYGCPDVTTPILKLMAELVQ 773 (1082)
T ss_pred HHHhcc-ccccHHHHHHHHHHHHHHhhhhhhhhccchHHHHHHHHhhhhHHHHHHHHHHhcCCCCccccHHHHHHHHHHh
Confidence 763221 3578999999999999999999999999966 599999999 6899999999999999999999999999999
Q ss_pred hhccc----cCccchHHHHHHHHHHHHHHhccc--CCccccchhhhhhhhhhHHHHHHHHHhhhcCCCcceeEeeeee--
Q 002003 884 GQISY----LEVQETNIVIDFCTRLLQLYSSHN--IGKVQFWYIVVSTKSMLVLIIFVMHSNLLFTAQISVINIFIYG-- 955 (983)
Q Consensus 884 ~~~~~----l~~~~~~~Lf~~~~~li~~Y~~~~--~~~~~~~~~~~~~k~k~i~~~~~iL~~~l~~~~v~~~~~~lyG-- 955 (983)
|+.++ +++|||++||||++|++.+||++. ++.++.++ +|++|||||++||.||+|+|+|+|||||||+|||
T Consensus 774 NrsQRL~Fd~SSpngiLLFrEtSKmv~~YG~riL~Lp~vskdq-iY~~kyKgI~v~~siLk~AL~GnYv~FGVFrLYGD~ 852 (1082)
T KOG1410|consen 774 NRSQRLKFDVSSPNGILLFRETSKMVSIYGNRILQLPEVSKDQ-IYAEKYKGISVCFSILKNALSGNYVNFGVFRLYGDS 852 (1082)
T ss_pred hhHhheecccCCCceeEEehhhhHHHHHHhhHhhcccCcchhh-hHHHHhcCceehHHHHHHHhhcCccccceeeeeCch
Confidence 99885 459999999999999999999995 45566555 8999999999999999999999999999999999
Q ss_pred ------------ccc---HHHHHhchhhhHHHHHHHHHh
Q 002003 956 ------------HMS---LLLLLLHSIHCGEVYKAFRSI 979 (983)
Q Consensus 956 ------------l~~---~dll~~~p~l~~~yy~l~~~~ 979 (983)
+.+ .|+|.| |||+++||.|++++
T Consensus 853 ~l~daL~~fvKm~lsIp~sD~l~Y-~Klsqsyy~llE~l 890 (1082)
T KOG1410|consen 853 ALDDALQTFVKMLLSIPHSDLLSY-RKLSQSYYNLLEVL 890 (1082)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHhH-HHHHHHHhhHHHHH
Confidence 223 399999 99999999999986
No 2
>KOG4541 consensus Nuclear transport receptor exportin 4 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5e-52 Score=454.49 Aligned_cols=505 Identities=16% Similarity=0.091 Sum_probs=425.1
Q ss_pred ccHHHHHHHHHH----HHH-hhhcccccCCCCCCChhhhhhHHHHHHHHHHhhhcccccc--------c-cCCCcccc--
Q 002003 448 WSWEARDILLDT----WTT-LLVSLDSTGRNVVLPLEVRNAAASLFALIVESELKVASAS--------A-MDDNGEFN-- 511 (983)
Q Consensus 448 ~~~es~~~LL~~----W~~-lv~~~~~~~~~~~~p~~l~~~~~~I~~~yi~srL~~~~~~--------~-~~d~d~de-- 511 (983)
.++++++.||+. |.. ++.++...-+. .-.+.+++.+|++.|+++|+.++.+. . .|+++.++
T Consensus 3 ~y~s~~d~Ll~s~~~~Wltnl~~~~~~~f~~---~Gf~~d~~V~v~n~~lq~hl~~~~ga~i~~an~V~~R~eee~~~l~ 79 (748)
T KOG4541|consen 3 PYASWCDVLLSSSHVGWLTNLYSSVRQKFDL---EGFWLDCPVAVSNRKLQVHLCSLAGAEIFPANNVQMRDEEELLLLT 79 (748)
T ss_pred chHHHHHHHHhcCCcchHHHHHhhHHHHHhh---hhhHhhCcHHHHHHHHHHHhcccchhhcccccchhcccHHHHHhhc
Confidence 467889999998 988 77763211111 12355789999999999999988752 1 23333222
Q ss_pred hhhccHHHHHHHHHHHHHHHHHcHhhhHHHHHHHHHHHHHHHhcc----------cCCCC-----cchhhHHHHHHHHHH
Q 002003 512 YLQASISAMDERLSSYALIARAAIDATVPLLTRLFSERFARLHQG----------RGMID-----PTETLEELYSLLLIT 576 (983)
Q Consensus 512 ~~e~d~~~~~eqL~~ia~l~R~~~~~t~~lL~~l~~~~~~~l~~~----------~~~~~-----~~~~~E~L~WLv~i~ 576 (983)
+.|||.+.+.|++......||...+.+.+.. .+++....+++.. .|+.. ...++||.|||+++.
T Consensus 80 ~~edd~D~s~D~~~~~~~~gr~gae~c~~~~-~lle~~~t~lh~~~~~~~~~la~~GS~t~~s~~l~~~~eDqHWLmLVl 158 (748)
T KOG4541|consen 80 GVEDDIDPSPDVISKEIEEGRSGAEMCDGCR-ALLEIGTTTLHVVFDQLLRSLAPFGSLTLLSMLLGEVVEDQHWLMLVL 158 (748)
T ss_pred CCCccCCcchhHHHHHHhcCchHHHHHHHHH-HHHHhcccccHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 2256666788999999999999999999988 7999888888731 23321 156899999999999
Q ss_pred HhHhccCCCCCccccchhhhhhhhhh--------------hh------------hccChHHHHHHHHHHHHHHhcCc--c
Q 002003 577 GHVLADEGEGEIPVVPNAIQTHFVDT--------------IE------------AAKHPVVLLCGSIIKFAEWSLDP--E 628 (983)
Q Consensus 577 G~~Lad~~~gE~~~iP~~i~~~~~~~--------------~~------------~~~d~v~~L~~~vl~l~~~~l~~--~ 628 (983)
|+.++|+..|+.|.+|..+..|+... .+ -..|+++.+.+..+++...+.+. +
T Consensus 159 ~~~~~dee~~~~~~~~~~~~~yt~~htsk~D~s~~~q~L~~~ge~~a~s~~~y~~e~d~~I~~~sa~~~~~~~e~~~v~a 238 (748)
T KOG4541|consen 159 MANSTDEETWSYEARDILLDTYTTLHTSKMDGSGGNQWLPPEGEHAAASLFSYIVESDLKIASASATTEDDADELASVSA 238 (748)
T ss_pred HHhccccccCCccCCCchHhhhhhhhcccccCCCcccccCCcccchhhhhhhhhhhcchHHHHhHHHhhhhHHHHHHHHH
Confidence 99999999999999999998775310 00 13477788888888888776322 2
Q ss_pred CcccCCCHHHHHHHHHHHHHHHHhhcCCccccccCCCCcCCCCCccccccchhhHHHhhhcCCCCh-hhHHHHHHHHHHH
Q 002003 629 ARASVFSPRLMEAIVWFLARWSQTYLMPLEEFRDSSTNLCHDTGYQHQSSTSRKALLSFFGEHNQG-KPVLDIIVRISMT 707 (983)
Q Consensus 629 ~~~~~~Sp~L~~a~lwFl~~~~~~Yl~~~~~~~~~~~~~~~~~~y~~~s~~~~~~L~~~fg~~~~~-~~vl~~lv~ki~~ 707 (983)
....++||++...+.||+.+|.++|....++ .|.++|+ .-..++|.++.+ .+++.++++|++.
T Consensus 239 ~~~~l~Sp~l~~~l~rfl~a~~~~~~~~~~~------------~y~~~s~----~~~tv~p~~te~s~~~~~~ii~kVla 302 (748)
T KOG4541|consen 239 MDERLGSPALIARLARFLDATIPFLAKLFSD------------HYARLSQ----GRGTVDPTETEESVYSLLLIIGKVLA 302 (748)
T ss_pred HHHhccCHHHHHHHHHHHHhhhhHHHHHhHH------------HHHHhcC----CCCCCCcccchhhHHHHHHHHHHHHH
Confidence 2235699999999999999999999887744 2666542 345567776644 6889999999999
Q ss_pred hccCCCCchhHHHHHHHHHHHHHhccccchhhhhcchHHHHHHHHhhccc-ccccccchhhHHHHHHHHHHhhcCCCchh
Q 002003 708 TLVSYPGEKDLQELTCNQLLHALVRRKNVCVHLVALGSWRELASAFANDK-TLILLNSTNQRSLAQTLVLSAYGMRNSES 786 (983)
Q Consensus 708 nL~~w~~e~~vi~~t~~~LL~~L~~~~~~~~~l~~~~~~~~L~~~~~~~~-~~~~l~~~~~~~l~~aL~~~~~~~~d~~~ 786 (983)
+|..|.+|++++.+++ +++.+||.+++.....+.++.|+.+...+.+.. |+.-+++..++++|+||++.|++..|.+.
T Consensus 303 ~lvn~~sE~~L~~Da~-q~l~~lVe~~~~~~vvv~~e~~~~laeq~~s~~~~l~i~s~p~~~~lmkaLvl~gfa~~d~e~ 381 (748)
T KOG4541|consen 303 DLVNGESETALVPDAL-QSLFVLVEEANNHPVVVLSESIIKLAEQCLSAEMRLSIFSPPLMEALMKALVLWGFAYLDLEE 381 (748)
T ss_pred HHhcccchhhhhHHHH-HHHHHHHHHhccCCeeeccHHHHHHHHHHhccCCcccccCchHHHHHHHHHHHHHHHHhhHHH
Confidence 9999999999999999 999999999888889999999999999987765 56666788999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCCcccccCchhHHHHHHHHHHHhhchhhccCCCcHHHHHHHHHhhHHHHHHHHHHhcc
Q 002003 787 SNQYVRDLTRHATAYLVELSGKNDLKNVSQQPDIILLVSCLLERLRGAANATEPRTQKAIYEMGFSVMNPVLLLLEVYKH 866 (983)
Q Consensus 787 ~~~~f~~~~~pl~~~~~~l~~~~~~~~~~~~~~vk~~i~~ll~~LrGia~a~~~~~~~~lf~~i~~~l~~l~~l~~~y~~ 866 (983)
..+||+..++||.+||...++++ ++.+++.+|+..|+++.|+|.|.+..++..||+|++.++..|+++|+.|.+
T Consensus 382 ~~n~~~~~LqpL~~Rf~~~~nq~------~q~~~~~~Ii~~l~~~~g~a~a~q~d~~~~Lf~fL~~~~~~c~glm~s~~~ 455 (748)
T KOG4541|consen 382 ECNLGSNKLQPLPSRFFTYFNQH------NQGKFVLDIIVRLSLTSGTAYAGQKDLQRSLFQFLVLSAYGCRGLMASNQY 455 (748)
T ss_pred HHHHHHhhccccHHHHHHHhccc------chhhHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHhhhhhHHHHhhc
Confidence 99999999999999999999987 478999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHhhhccccC-ccchHHHHHHHHHHHHHHhcccCCccccchhhhhhhhhhHHHHHHHHHhhhcCC-
Q 002003 867 ESAVVYLLLKFVVDWVDGQISYLE-VQETNIVIDFCTRLLQLYSSHNIGKVQFWYIVVSTKSMLVLIIFVMHSNLLFTA- 944 (983)
Q Consensus 867 ~p~Vv~~iLkff~elv~~~~~~l~-~~~~~~Lf~~~~~li~~Y~~~~~~~~~~~~~~~~~k~k~i~~~~~iL~~~l~~~- 944 (983)
.|++|..|+..++|+.++.++|+. ...++.+|..|+++.+.|+..+.+|.+.+..+|||+|.|+.++|.+|+|.|+.+
T Consensus 456 ~~~~v~~i~~~~vdvs~k~~~y~~~e~~~~~ly~sclql~~~y~~~~~~r~rt~~a~~Ee~~sdl~lvl~lL~n~lskdF 535 (748)
T KOG4541|consen 456 VKDLVAHITSSLVDVSNKSDLYNLAEQPDIILYVSCLQLERLYGAASATRPRTQRAIYEEGLSDLNLVLRLLENYLSKDF 535 (748)
T ss_pred cHHHHHHHHHHHHHhhhhhhhhccccChhHHHHHHHHHHHHHhhhhcccCcchHHHHHHhhhhHHHHHHHHHHHHhhhhh
Confidence 999999999999999999999998 778999999999999999999999999999999999999999999999999953
Q ss_pred -------Ccce--eEeeeee------cccHHHHHhchhhhHHHHHHHHHhh
Q 002003 945 -------QISV--INIFIYG------HMSLLLLLLHSIHCGEVYKAFRSIQ 980 (983)
Q Consensus 945 -------~v~~--~~~~lyG------l~~~dll~~~p~l~~~yy~l~~~~~ 980 (983)
.++- ++|++|| ||+.|||+| ||||.+||++|.||-
T Consensus 536 ~~~s~e~~~~~G~a~VV~~gl~~ilplm~~~lLk~-P~lc~~~~~lIty~c 585 (748)
T KOG4541|consen 536 SSDSIETQSTNGIAQVVYFGLHIILPLMTLELLKY-PKLCFDDVDLITYMC 585 (748)
T ss_pred hccccccccccCcceEEEeeHHHHHHHHHHHHHhc-hHHHHHHHHHHHHHH
Confidence 2222 5899999 889999999 999999999999874
No 3
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=100.00 E-value=1.7e-27 Score=265.12 Aligned_cols=243 Identities=13% Similarity=0.230 Sum_probs=212.1
Q ss_pred HHHHHHHHHhhCCCC--HHHHHHHHHhhhcCCChHHHHHHHHhcCCchhHHHHHHHHHHHHHhhccCCCCHHHHHHHHHH
Q 002003 33 HSIEIACSSIQMHVN--PAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGF 110 (983)
Q Consensus 33 ~~lE~~~~~ly~~~~--r~~Ae~~L~~f~~~~~~~~~c~~ILe~S~~~y~~f~A~~~L~~~v~~~W~~l~~~~r~~lr~~ 110 (983)
+-|+++++.+|.|.+ ++|||++|+.|++.||+|++..+||++|+.|..+|.|+++|.++|+++|+.+|.++|.+||+|
T Consensus 14 allDkVVttfyqg~g~~q~qAq~iLtkFq~~PdaWtkad~IL~~S~~pqskyiALs~LdklIttkWkllp~~~r~GiRny 93 (1053)
T COG5101 14 ALLDKVVTTFYQGDGRKQEQAQRILTKFQELPDAWTKADYILNNSKLPQSKYIALSLLDKLITTKWKLLPEGMRQGIRNY 93 (1053)
T ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHHhCchHHHHHHHHHhcccCcchhhhHHHHHHHHHHhhhhhCCcHHHHHHHHH
Confidence 668999999999976 688999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCC-----hhHHHHHHHHHHHHHHhhccCCCCCCchhhHHHHHHHHhcccCC-chhHHHHHHHHHHHHhhh
Q 002003 111 CLCFVMQHASSP-----EGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHG-VDTQFIGINFLESLVSEF 184 (983)
Q Consensus 111 ll~yl~~~~~~l-----~~~V~~~l~~~la~I~K~gW~d~~~~~~~~~~~~v~~~l~~~~s-~~~~~igl~iL~~lv~Ef 184 (983)
+.+.+++++.+. +++|.+++..+++.|+|++||.+ |++|+.|+.+..+.+-+ .++.++.+++|++.|++|
T Consensus 94 vv~~vI~~s~dd~v~~~qk~~lnkldltLvqIlKqeWP~n----WP~FIpeli~~S~~s~~vCeNnmivLklLsEEvFdf 169 (1053)
T COG5101 94 VVQLVIEKSQDDKVRDKQKYVLNKLDLTLVQILKQEWPRN----WPTFIPELINVSQISMEVCENNMIVLKLLSEEVFDF 169 (1053)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHhhhHHHHHHHHhcccc----cchhhHHHHhhccchHHHHhccHHHHHHhHHHHHhc
Confidence 999999998554 48999999999999999999985 99999999888763111 366689999999999999
Q ss_pred CCCCCCCCCCChHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHhcccccccCCCCC
Q 002003 185 SPSTSSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWDFQFDTSGR 264 (983)
Q Consensus 185 s~~~ss~~gl~~~~Hrk~~~sf~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~LswdF~~~~~d~ 264 (983)
|.. .++-.+.|..|.++ .-.+++||.+|-++|+... +.++++++|+-+...|.|.+.+.
T Consensus 170 Sae-----qmTq~k~~~LkNqm-~~EF~qIF~lc~qiLE~~~-----------~~SLi~ATLesllrfl~wiPl~y---- 228 (1053)
T COG5101 170 SAE-----QMTQVKKRLLKNQM-KIEFPQIFGLCKQILEYSR-----------DESLIEATLESLLRFLEWIPLDY---- 228 (1053)
T ss_pred cHH-----HHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHhcC-----------ChHHHHHHHHHHHHHHhhCchhH----
Confidence 875 22333556667777 4569999999999998643 66899999999999999999875
Q ss_pred cccccccccccccccCCCCcccccccCCCccchHhhcccchHHHHHHHHHHHHhccccCCCCCCccchHHHHHHHHHHHh
Q 002003 265 KISINVFSAGVRTETSSSKRSECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLIVQLCS 344 (983)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~s~~~~t~~~p~~Wr~~l~~~~~l~llf~ly~~lr~~~~~~~~~~~~~l~~~al~cL~qLaS 344 (983)
+...++++++.+.+.. -|+....+++||+++++
T Consensus 229 -----------------------------------IfeTnIieLv~~~f~s------------~pd~r~~tl~CLtEi~~ 261 (1053)
T COG5101 229 -----------------------------------IFETNIIELVLEHFNS------------MPDTRVATLSCLTEIVD 261 (1053)
T ss_pred -----------------------------------HHHHHHHHHHHHHhcc------------CCchhHHHHHHHHHHHh
Confidence 5677889988877654 26788999999999999
Q ss_pred ccC
Q 002003 345 LTG 347 (983)
Q Consensus 345 l~~ 347 (983)
+.+
T Consensus 262 L~~ 264 (1053)
T COG5101 262 LGR 264 (1053)
T ss_pred hcc
Confidence 986
No 4
>KOG4541 consensus Nuclear transport receptor exportin 4 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=8.8e-22 Score=217.45 Aligned_cols=516 Identities=58% Similarity=0.871 Sum_probs=377.5
Q ss_pred cCCCccchHhhcccchHHHHHHHHHHHHhccccCCCCCCccchHHHHHHHHHHHhccC-CccCCCChhhHHHHHHHHHHh
Q 002003 290 VQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLIVQLCSLTG-TVFPSDNGKMQEHHLLQLLSG 368 (983)
Q Consensus 290 ~~~p~~Wr~~l~~~~~l~llf~ly~~lr~~~~~~~~~~~~~l~~~al~cL~qLaSl~~-~~f~~~~~~~r~~yl~~~l~~ 368 (983)
++|..+|-+.++..+.+.|+-++|...+++....+.|+++++....+...+++|+..| -+|+......|.+.....++|
T Consensus 1 v~~y~s~~d~Ll~s~~~~Wltnl~~~~~~~f~~~Gf~~d~~V~v~n~~lq~hl~~~~ga~i~~an~V~~R~eee~~~l~~ 80 (748)
T KOG4541|consen 1 VKPYASWCDVLLSSSHVGWLTNLYSSVRQKFDLEGFWLDCPVAVSNRKLQVHLCSLAGAEIFPANNVQMRDEEELLLLTG 80 (748)
T ss_pred CcchHHHHHHHHhcCCcchHHHHHhhHHHHHhhhhhHhhCcHHHHHHHHHHHhcccchhhcccccchhcccHHHHHhhcC
Confidence 4688999999999999999999999999988887889999999988888899999999 789888878899999999999
Q ss_pred hhhhcCC-hhhhHHHhhhCCChhhHHHHHHHHHHHH-hhcChhhHHHhhhccCchhhHHHHHHHHHHHHH-------HHh
Q 002003 369 ILEWVDP-PDVVAQAIESGKSESEMLDGCRALLSIA-TVTTPFVFDRLLKSIRPFGTLTLLSNLMCEVVK-------VLM 439 (983)
Q Consensus 369 ~~~il~~-~~~~~~~~~~gl~~~~~~e~cr~L~rL~-~~~~~~~l~~l~~s~~~~~~l~~L~~Lt~~~i~-------~~~ 439 (983)
.-+..++ |+....-...|....++-+.||.+.... ++.+ -.+...+.+..++|....++.+.-...+ ..+
T Consensus 81 ~edd~D~s~D~~~~~~~~gr~gae~c~~~~~lle~~~t~lh-~~~~~~~~~la~~GS~t~~s~~l~~~~eDqHWLmLVl~ 159 (748)
T KOG4541|consen 81 VEDDIDPSPDVISKEIEEGRSGAEMCDGCRALLEIGTTTLH-VVFDQLLRSLAPFGSLTLLSMLLGEVVEDQHWLMLVLM 159 (748)
T ss_pred CCccCCcchhHHHHHHhcCchHHHHHHHHHHHHHhcccccH-HHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 8888876 5544433344555577888899876553 3332 2444433333445554444443332222 223
Q ss_pred hcccccCcccHHHHHHHHHHHHHhhhc-ccccCCCCCCChhhhhhHHHHHHHHHHhhhccccccccCCCcccchhhccHH
Q 002003 440 MNNTEEGTWSWEARDILLDTWTTLLVS-LDSTGRNVVLPLEVRNAAASLFALIVESELKVASASAMDDNGEFNYLQASIS 518 (983)
Q Consensus 440 ~~~~~~~~~~~es~~~LL~~W~~lv~~-~~~~~~~~~~p~~l~~~~~~I~~~yi~srL~~~~~~~~~d~d~de~~e~d~~ 518 (983)
-.+..|++|..++.+.++..|+.+-++ ++..++++=.|++.++.+..+++--+++-+.-+..++.-++ ++++.+...
T Consensus 160 ~~~~dee~~~~~~~~~~~~~yt~~htsk~D~s~~~q~L~~~ge~~a~s~~~y~~e~d~~I~~~sa~~~~--~~~e~~~v~ 237 (748)
T KOG4541|consen 160 ANSTDEETWSYEARDILLDTYTTLHTSKMDGSGGNQWLPPEGEHAAASLFSYIVESDLKIASASATTED--DADELASVS 237 (748)
T ss_pred HhccccccCCccCCCchHhhhhhhhcccccCCCcccccCCcccchhhhhhhhhhhcchHHHHhHHHhhh--hHHHHHHHH
Confidence 334677899999999999999999888 77776666678888888888887655766554444432121 222233344
Q ss_pred HHHHHHHHHHHHHHH--cHhhhHHHHHHHHHHHHHHHhcccCCCCcchhhHHHHHHHHHHHhHhccC--CCCCccccchh
Q 002003 519 AMDERLSSYALIARA--AIDATVPLLTRLFSERFARLHQGRGMIDPTETLEELYSLLLITGHVLADE--GEGEIPVVPNA 594 (983)
Q Consensus 519 ~~~eqL~~ia~l~R~--~~~~t~~lL~~l~~~~~~~l~~~~~~~~~~~~~E~L~WLv~i~G~~Lad~--~~gE~~~iP~~ 594 (983)
..+++|-+-+.+.|. ..+.+.+.+..++.+..+++.+..+..+|....|..+-+.+++|+||++- .+||+.+.|..
T Consensus 238 a~~~~l~Sp~l~~~l~rfl~a~~~~~~~~~~~~y~~~s~~~~tv~p~~te~s~~~~~~ii~kVla~lvn~~sE~~L~~Da 317 (748)
T KOG4541|consen 238 AMDERLGSPALIARLARFLDATIPFLAKLFSDHYARLSQGRGTVDPTETEESVYSLLLIIGKVLADLVNGESETALVPDA 317 (748)
T ss_pred HHHHhccCHHHHHHHHHHHHhhhhHHHHHhHHHHHHhcCCCCCCCcccchhhHHHHHHHHHHHHHHHhcccchhhhhHHH
Confidence 556777777666663 46788899999999999999998888888777777666778899999997 67899999999
Q ss_pred hhhhhhhhhhhccChHHHHHHHHHHHHHHhcCccCcccCCCHHHHHHHHHHHHHHHHhhcCCccccccCCCCcCCCCCcc
Q 002003 595 IQTHFVDTIEAAKHPVVLLCGSIIKFAEWSLDPEARASVFSPRLMEAIVWFLARWSQTYLMPLEEFRDSSTNLCHDTGYQ 674 (983)
Q Consensus 595 i~~~~~~~~~~~~d~v~~L~~~vl~l~~~~l~~~~~~~~~Sp~L~~a~lwFl~~~~~~Yl~~~~~~~~~~~~~~~~~~y~ 674 (983)
++-+..-..+++.++++.++..+.++.+++.+..++-..+||.+.++++|+|-+|.-+|+--+++.-. +.
T Consensus 318 ~q~l~~lVe~~~~~~vvv~~e~~~~laeq~~s~~~~l~i~s~p~~~~lmkaLvl~gfa~~d~e~~~n~----------~~ 387 (748)
T KOG4541|consen 318 LQSLFVLVEEANNHPVVVLSESIIKLAEQCLSAEMRLSIFSPPLMEALMKALVLWGFAYLDLEEECNL----------GS 387 (748)
T ss_pred HHHHHHHHHHhccCCeeeccHHHHHHHHHHhccCCcccccCchHHHHHHHHHHHHHHHHhhHHHHHHH----------HH
Confidence 98776543344668888999999999999877766666799999999999999999999765533111 11
Q ss_pred ccccchhhHHHhhhcCCCChhhHHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHhccccchhhhhcchHHHHHHHHhh
Q 002003 675 HQSSTSRKALLSFFGEHNQGKPVLDIIVRISMTTLVSYPGEKDLQELTCNQLLHALVRRKNVCVHLVALGSWRELASAFA 754 (983)
Q Consensus 675 ~~s~~~~~~L~~~fg~~~~~~~vl~~lv~ki~~nL~~w~~e~~vi~~t~~~LL~~L~~~~~~~~~l~~~~~~~~L~~~~~ 754 (983)
..-++.+..+-.+|.+++++..+.+++++--.+...+++++.+...
T Consensus 388 ~~LqpL~~Rf~~~~nq~~q~~~~~~Ii~~l~~~~g~a~a~q~d~~~---------------------------------- 433 (748)
T KOG4541|consen 388 NKLQPLPSRFFTYFNQHNQGKFVLDIIVRLSLTSGTAYAGQKDLQR---------------------------------- 433 (748)
T ss_pred hhccccHHHHHHHhcccchhhHHHHHHHHHHHhccccccccchhHH----------------------------------
Confidence 1111223346677777777777777777777777776666665532
Q ss_pred cccccccccchhhHHHHHHHHHHhhcCCCchhhhHHHHHHHHHHHHHHHHHhCCCCcccccCchhHHHHHHHH-HHHhhc
Q 002003 755 NDKTLILLNSTNQRSLAQTLVLSAYGMRNSESSNQYVRDLTRHATAYLVELSGKNDLKNVSQQPDIILLVSCL-LERLRG 833 (983)
Q Consensus 755 ~~~~~~~l~~~~~~~l~~aL~~~~~~~~d~~~~~~~f~~~~~pl~~~~~~l~~~~~~~~~~~~~~vk~~i~~l-l~~LrG 833 (983)
.|++.|...+..+....+..+|...++.-|++.|..+.+..+.....+++++..-+.++ +++++|
T Consensus 434 --------------~Lf~fL~~~~~~c~glm~s~~~~~~~v~~i~~~~vdvs~k~~~y~~~e~~~~~ly~sclql~~~y~ 499 (748)
T KOG4541|consen 434 --------------SLFQFLVLSAYGCRGLMASNQYVKDLVAHITSSLVDVSNKSDLYNLAEQPDIILYVSCLQLERLYG 499 (748)
T ss_pred --------------HHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHhhhhhhhhccccChhHHHHHHHHHHHHHhh
Confidence 22222222222222222445677888888899999988877665566788888778888 999999
Q ss_pred hhhccCCCcHHHHHHHHHhhHHHHHHHHHHhcc
Q 002003 834 AANATEPRTQKAIYEMGFSVMNPVLLLLEVYKH 866 (983)
Q Consensus 834 ia~a~~~~~~~~lf~~i~~~l~~l~~l~~~y~~ 866 (983)
-+.+..+++....++--+..+..++++++.|.+
T Consensus 500 ~~~~~r~rt~~a~~Ee~~sdl~lvl~lL~n~ls 532 (748)
T KOG4541|consen 500 AASATRPRTQRAIYEEGLSDLNLVLRLLENYLS 532 (748)
T ss_pred hhcccCcchHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 999999999999999988888888888887754
No 5
>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=3.6e-19 Score=218.31 Aligned_cols=346 Identities=16% Similarity=0.190 Sum_probs=242.6
Q ss_pred HHHHHHHHHhhC-CCC--HHHHHHHHHhhhcCCChHHHHHHHHhcCCchhHHHHHHHHHHHHHhhccCCCCHHHHHHHHH
Q 002003 33 HSIEIACSSIQM-HVN--PAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIG 109 (983)
Q Consensus 33 ~~lE~~~~~ly~-~~~--r~~Ae~~L~~f~~~~~~~~~c~~ILe~S~~~y~~f~A~~~L~~~v~~~W~~l~~~~r~~lr~ 109 (983)
+-++++...++. +.+ |.+|++++.+|+..|+.|..|..||+.|+++.++|||++.|++.+..+|+.+|..+|.++|+
T Consensus 11 ~lldavv~~~~~~~s~~~r~eA~~~l~~lke~~~~~~~~~~iL~~s~~~~~k~f~Lqlle~vik~~W~~~~~~~r~glk~ 90 (1041)
T KOG2020|consen 11 ELLDAVVVTLNPEGSNEERGEAQQILEELKEEPDSWLQVYLILKLSTNPILKYFALQLLENVIKFRWNSLPVEERVGLKN 90 (1041)
T ss_pred HHHHhHHHHhCcccchHHHHHHHHHHHHHHhCcchHHHHHHHHhccCCchhheeeHHHHHHHHHHhcccCCccccHHHHH
Confidence 335555555554 333 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCC-----hhHHHHHHHHHHHHHHhhccCCCCCCchhhHHHHHHHHhcccCC-chhHHHHHHHHHHHHhh
Q 002003 110 FCLCFVMQHASSP-----EGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHG-VDTQFIGINFLESLVSE 183 (983)
Q Consensus 110 ~ll~yl~~~~~~l-----~~~V~~~l~~~la~I~K~gW~d~~~~~~~~~~~~v~~~l~~~~s-~~~~~igl~iL~~lv~E 183 (983)
|+...+....+.. .+++++|+...++.|+||.|+.. |++|+.++.+....+.+ .+..++.+.+|++.|++
T Consensus 91 ~v~~~~~~~~~~~~~~~~~~~~~~kL~~i~Vqi~K~eWp~~----wp~~i~dl~~~s~~s~~~~el~m~Il~lLsEdvf~ 166 (1041)
T KOG2020|consen 91 YVLTLIIEASPDEDVSETEKHLLNKLNLILVQIVKREWPAI----WPTFIPDLAQSSKTSETVCELSMIILLLLSEEVFD 166 (1041)
T ss_pred HHHHHHhhcCCcHhHHHHHHHHHHHHhHHHHHHHHHHHHhh----cchhhhhHHHHhhcCcccchHHHHHHHHHHHHHhc
Confidence 9999999988666 58999999999999999999985 99999999998874222 46667888999999999
Q ss_pred hCCCCCCCCCCChHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHhcccccccCCCC
Q 002003 184 FSPSTSSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWDFQFDTSG 263 (983)
Q Consensus 184 fs~~~ss~~gl~~~~Hrk~~~sf~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~LswdF~~~~~d 263 (983)
|+....+ -..+.--+.+++. .+..||++|..++.++. .. ++.++|..+...++|.+.+..
T Consensus 167 ~ss~~~~-----q~~~~il~~~~~~-~f~~i~~l~~~~~~~a~-----------~~-~~~atl~tl~~fl~wip~~~I-- 226 (1041)
T KOG2020|consen 167 FSSSELT-----QQKIIILKNLLEN-EFQQIFTLCSYIKEKAN-----------SE-LLSATLETLLRFLEWIPLGYI-- 226 (1041)
T ss_pred ccchHHH-----hhhHHHHHHHhhH-HHHHHHHHHHHHHhhhh-----------hH-HHHHHHHHHHHHhhcccHHHH--
Confidence 9876322 1234444556643 68899999988766543 33 999999999999999998863
Q ss_pred CcccccccccccccccCCCCcccccccCCCccchHhhcccchHHHHHHHHHHHHhccccCCCCCCccchHHHHHHHHHHH
Q 002003 264 RKISINVFSAGVRTETSSSKRSECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLIVQLC 343 (983)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~s~~~~t~~~p~~Wr~~l~~~~~l~llf~ly~~lr~~~~~~~~~~~~~l~~~al~cL~qLa 343 (983)
...+.+..+...+-. .+.+...|++||.+++
T Consensus 227 -------------------------------------~~tn~l~~~l~~~ln------------~~~~r~~al~CL~ei~ 257 (1041)
T KOG2020|consen 227 -------------------------------------FETNILELLLNKFLN------------APELRNNALSCLTELL 257 (1041)
T ss_pred -------------------------------------HHhhhHHHHHHhccc------------hHHHHHHHHHHHHHHH
Confidence 233335555444322 3678999999999999
Q ss_pred hccCCccCCCChhhHHHHHHHHHHhhhhhcCChhhhHHHhhhCCChh--hHH-HHHHHHHHHHhhcChhhHHHhhhccCc
Q 002003 344 SLTGTVFPSDNGKMQEHHLLQLLSGILEWVDPPDVVAQAIESGKSES--EML-DGCRALLSIATVTTPFVFDRLLKSIRP 420 (983)
Q Consensus 344 Sl~~~~f~~~~~~~r~~yl~~~l~~~~~il~~~~~~~~~~~~gl~~~--~~~-e~cr~L~rL~~~~~~~~l~~l~~s~~~ 420 (983)
|..+..+.... ..++...+..+..+.++ .........+..++ .+. .+|..|..+...| ..++++.
T Consensus 258 s~~~~~~~~~~----~~~~~~~~~~l~~i~~~-l~~~~~~~~~~~~dq~~fi~~l~~~l~~f~~~~-----~~lle~~-- 325 (1041)
T KOG2020|consen 258 SRKRSIYERKT----VPMFNLTIYQLRSIPQD-LDIPEVYSSLSDEDQDSFIEKLAQFLSLFFEQH-----IALLESS-- 325 (1041)
T ss_pred hccccchhHHh----HHHHHHHHHHHHHhhhh-hchhhhhhcccHhHHHHHHHHHHHHHHHHHHHH-----HHHHcCc--
Confidence 99987443322 23444444443311111 11112222222222 333 3444444444333 2232220
Q ss_pred hhhHHHHHHHHHHHHHHHhhcccccCcccHHHHHHHHHHHHHhhhccccc
Q 002003 421 FGTLTLLSNLMCEVVKVLMMNNTEEGTWSWEARDILLDTWTTLLVSLDST 470 (983)
Q Consensus 421 ~~~l~~L~~Lt~~~i~~~~~~~~~~~~~~~es~~~LL~~W~~lv~~~~~~ 470 (983)
..-.+.+-..+..++..+++++ ++.+..+|+.|..++....|.
T Consensus 326 ~~~~~~~~~~~~~li~i~~~~~-------se~~~~~ld~W~~lv~~l~~~ 368 (1041)
T KOG2020|consen 326 LSQRPVLLEALLELILISTIEP-------SEIFKICLDYWNKLVADLYYN 368 (1041)
T ss_pred hhhhhHHHHHHHHHHHHhccCc-------hhHHHHHHHHHHHHHHhhhcc
Confidence 0001111222234444445533 588899999999999998774
No 6
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=4.7e-10 Score=132.21 Aligned_cols=150 Identities=17% Similarity=0.127 Sum_probs=125.4
Q ss_pred HHHHHHHHHHhhCCCC---HHHHHHHHHhhhcCCChHHHHHHHHhcCCchhHHHHHHHHHHHHHhhccCCCCHHHHHHHH
Q 002003 32 MHSIEIACSSIQMHVN---PAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLI 108 (983)
Q Consensus 32 ~~~lE~~~~~ly~~~~---r~~Ae~~L~~f~~~~~~~~~c~~ILe~S~~~y~~f~A~~~L~~~v~~~W~~l~~~~r~~lr 108 (983)
++++|.+...+|.+++ .+.+++.|.+.+.+|++|+..+.+|+-.+++.+|||+|.+|...+.++|...+++++.+|+
T Consensus 6 Ia~v~~~v~~lY~~~~~~~~a~~qk~Lq~aq~S~Q~w~~s~~llQ~~k~~evqyFGAltL~~ki~~~~e~~~~~~~~qL~ 85 (982)
T KOG2022|consen 6 IATVEELVTTLYSHRNHENDAITQKWLQDAQCSQQGWHFSWQLLQPDKSSEVQYFGALTLHDKINTRWEECPANEAVQLK 85 (982)
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCchhHHHHHhHHHHHHHHHhhhccCChhHHHHHH
Confidence 4999999999998854 7889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCChhHHHHHHHHHHHHHHhhccCCCCCCchhhHHHHHHHHhcccCCc-----hhHHHHHHHHHHHHhh
Q 002003 109 GFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGV-----DTQFIGINFLESLVSE 183 (983)
Q Consensus 109 ~~ll~yl~~~~~~l~~~V~~~l~~~la~I~K~gW~d~~~~~~~~~~~~v~~~l~~~~s~-----~~~~igl~iL~~lv~E 183 (983)
.-++.-+.... ..++.|.+|++-.+|..+=.-=+| .|+.-+.++.+.++.+.+| -+|.+-+..|+.+-.|
T Consensus 86 ~klf~~l~~~~-g~~~lVl~kl~~sLasl~l~~~~d----~Wp~ai~~vi~~l~~q~~p~v~ad~n~~~~Le~Ls~~p~e 160 (982)
T KOG2022|consen 86 LKLFLILSRFA-GGPKLVLNKLCASLASLILYMVPD----LWPTAIQDVIPTLQGQASPLVLADINCEILLEVLSFMPAE 160 (982)
T ss_pred HHHHHHHHHhc-CCchhHHHHHHHHHHHHHHHHccc----cCCchHHHHHHHHhcccCccccchhhHHHHHHHhccCcHh
Confidence 99999887776 569999999988888776544444 5888899999988864454 3344555555544455
Q ss_pred hCC
Q 002003 184 FSP 186 (983)
Q Consensus 184 fs~ 186 (983)
|..
T Consensus 161 ~q~ 163 (982)
T KOG2022|consen 161 FQH 163 (982)
T ss_pred hhh
Confidence 543
No 7
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=99.57 E-value=8.1e-10 Score=127.80 Aligned_cols=261 Identities=11% Similarity=0.072 Sum_probs=202.0
Q ss_pred HHHHHHHHHHhhCCC-C---HHHHHHHHHhhhcCCChHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhccCCCCHHHHHH
Q 002003 32 MHSIEIACSSIQMHV-N---PAAAEATILGLCQSPQPYKACQFILENS-QVANARFQAAAAIRDAAMREWSFLTADEKKS 106 (983)
Q Consensus 32 ~~~lE~~~~~ly~~~-~---r~~Ae~~L~~f~~~~~~~~~c~~ILe~S-~~~y~~f~A~~~L~~~v~~~W~~l~~~~r~~ 106 (983)
|+.+|+|......|. + |+||-..+.++|.+|++|+.|-.+|-++ +++.++|+++++|.+.+....+..+..+..-
T Consensus 2 mddiEqav~a~ndp~vdsa~KqqA~~y~~qiKsSp~aw~Icie~l~~~ts~d~vkf~clqtL~e~vrekyne~nl~elql 81 (980)
T KOG2021|consen 2 MDDIEQAVNAVNDPRVDSATKQQAIEYLNQIKSSPNAWEICIELLINETSNDLVKFYCLQTLIELVREKYNEANLNELQL 81 (980)
T ss_pred chHHHHHHHhhCCCcccHHHHHHHHHHHHhhcCCccHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHhhccCCHHHHHH
Confidence 356899999988873 3 8999999999999999999999999776 8899999999999999987777799999999
Q ss_pred HHHHHHHHHHHcC-----CCChhHHHHHHHHHHHHHHhhccCCCCCCchhhHHHHHHHHhcccCCchhHHHHHHHHHHHH
Q 002003 107 LIGFCLCFVMQHA-----SSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLV 181 (983)
Q Consensus 107 lr~~ll~yl~~~~-----~~l~~~V~~~l~~~la~I~K~gW~d~~~~~~~~~~~~v~~~l~~~~s~~~~~igl~iL~~lv 181 (983)
+|.-+..|+.... ..+|+|++||+.++++-+.=...++. |+.|+.++...+.-....+..-.=|++|.++=
T Consensus 82 vR~sv~swlk~qvl~ne~~~~p~fi~Nk~aqvlttLf~~eYp~~----WnsfF~dlmsv~~~~s~~~~~dfflkvllaId 157 (980)
T KOG2021|consen 82 VRFSVTSWLKFQVLGNEQTKLPDFIMNKIAQVLTTLFMLEYPDC----WNSFFDDLMSVFQVDSAISGLDFFLKVLLAID 157 (980)
T ss_pred HHHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHhhhh----hHHHHHHHHHHHhcccchhhHHHHHHHHHHhh
Confidence 9998888876541 24689999999999999998888874 99999999887763111223456677777777
Q ss_pred hhhCCCCCCCCCCC---hHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHhcccccc
Q 002003 182 SEFSPSTSSAMGLP---REFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWDFQ 258 (983)
Q Consensus 182 ~Efs~~~ss~~gl~---~~~Hrk~~~sf~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~LswdF~ 258 (983)
.|..... +-++ ..+.-+.|..+|+++.++|-..--++++.-.+. -...+...+|+|..+..||+=+
T Consensus 158 sEiad~d---v~rT~eei~knnliKDaMR~ndip~lv~~wyqil~~y~n~--------~npgl~~~cLdc~g~fVSWIdI 226 (980)
T KOG2021|consen 158 SEIADQD---VIRTKEEILKNNLIKDAMRDNDIPKLVNVWYQILKLYENI--------VNPGLINSCLDCIGSFVSWIDI 226 (980)
T ss_pred hHhhhcc---ccCChHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHhcc--------CCchHHHHHHHHHHHHhhhhhh
Confidence 7775431 1222 234456789999999999988888887643311 1456889999999999999876
Q ss_pred cCCCCCcccccccccccccccCCCCcccccccCCCccchHhhcccchHHHHHHHHHHHHhccccCCCCCCccchHHHHHH
Q 002003 259 FDTSGRKISINVFSAGVRTETSSSKRSECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKL 338 (983)
Q Consensus 259 ~~~~d~~~~~~~~~~~~~~~~~~~~s~~~~t~~~p~~Wr~~l~~~~~l~llf~ly~~lr~~~~~~~~~~~~~l~~~al~c 338 (983)
+- +.+...+++++.+-.. ..+...|-.|
T Consensus 227 nL---------------------------------------IaNd~f~nLLy~fl~i-------------eelR~aac~c 254 (980)
T KOG2021|consen 227 NL---------------------------------------IANDYFLNLLYKFLNI-------------EELRIAACNC 254 (980)
T ss_pred hh---------------------------------------hhchhHHHHHHHHHhH-------------HHHHHHHHHH
Confidence 53 4566678888887653 4688889999
Q ss_pred HHHHHhccCCccCCCChhhHHHHHHHH
Q 002003 339 IVQLCSLTGTVFPSDNGKMQEHHLLQL 365 (983)
Q Consensus 339 L~qLaSl~~~~f~~~~~~~r~~yl~~~ 365 (983)
+..+.|-+-. +- ++...+..+
T Consensus 255 ilaiVsKkMk----P~--dKL~lln~L 275 (980)
T KOG2021|consen 255 ILAIVSKKMK----PM--DKLALLNML 275 (980)
T ss_pred HHHHHhcCCC----hh--HHHHHHHHH
Confidence 9999998743 11 456565444
No 8
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=8.7e-08 Score=117.16 Aligned_cols=147 Identities=20% Similarity=0.218 Sum_probs=130.8
Q ss_pred HHHHHHHHHhhCCCC--HHHHHHHHHhhhcCCChHHHHHHHHhcCCchhHHHHHHHHHHHHHhhccCCCCHHHHHHHHHH
Q 002003 33 HSIEIACSSIQMHVN--PAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGF 110 (983)
Q Consensus 33 ~~lE~~~~~ly~~~~--r~~Ae~~L~~f~~~~~~~~~c~~ILe~S~~~y~~f~A~~~L~~~v~~~W~~l~~~~r~~lr~~ 110 (983)
++|+++...+..|.| |++||+.+...-..+.......+|+.++.++.++=+|+-.+|+++++.|+.|+.+.|.+||.-
T Consensus 4 ~~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~~~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~siks~ 83 (1075)
T KOG2171|consen 4 APLEQLLQQLLSPDNEVRRQAEEALETLAKTEPLLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSIKSS 83 (1075)
T ss_pred hHHHHHHHHhcCCCchHHHHHHHHHHHhhcccchHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 678999999999976 999999999555444488888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCChhHHHHHHHHHHHHHHhhccCCCCCCchhhHHHHHHHHhcccCCchhHHHHHHHHHHHHhhhCCC
Q 002003 111 CLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFSPS 187 (983)
Q Consensus 111 ll~yl~~~~~~l~~~V~~~l~~~la~I~K~gW~d~~~~~~~~~~~~v~~~l~~~~s~~~~~igl~iL~~lv~Efs~~ 187 (983)
+|.-+..- ..+-|+.|++.++|.|.|-.-++ .|+..++-+-+.+++ .++..+..++.||+.+.+-|+..
T Consensus 84 lL~~~~~E---~~~~vr~k~~dviAeia~~~l~e----~WPell~~L~q~~~S-~~~~~rE~al~il~s~~~~~~~~ 152 (1075)
T KOG2171|consen 84 LLEIIQSE---TEPSVRHKLADVIAEIARNDLPE----KWPELLQFLFQSTKS-PNPSLRESALLILSSLPETFGNT 152 (1075)
T ss_pred HHHHHHhc---cchHHHHHHHHHHHHHHHhcccc----chHHHHHHHHHHhcC-CCcchhHHHHHHHHhhhhhhccc
Confidence 99987663 47899999999999999987766 598888888888875 68899999999999999999765
No 9
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=0.00012 Score=88.75 Aligned_cols=176 Identities=14% Similarity=0.214 Sum_probs=136.7
Q ss_pred CChhhHHHHHHHHHHHHHHhhCCCC-HHHHHHHHHhhhcCCChHHHHHHHHhcCCchh-HHHHHHHHHHHHHhhccCC--
Q 002003 23 ADLAKLQSIMHSIEIACSSIQMHVN-PAAAEATILGLCQSPQPYKACQFILENSQVAN-ARFQAAAAIRDAAMREWSF-- 98 (983)
Q Consensus 23 md~~~l~~~~~~lE~~~~~ly~~~~-r~~Ae~~L~~f~~~~~~~~~c~~ILe~S~~~y-~~f~A~~~L~~~v~~~W~~-- 98 (983)
||.+.+ ++.+-..+-.+++ |+.||+.|.++.+.|.-...|-+|.-....+. |+--|+--+++.|++.|..
T Consensus 1 md~~~l------~~~~~~T~d~d~~~R~~AE~~L~q~~K~pgFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~ 74 (1010)
T KOG1991|consen 1 MDLQSL------LQIFRATIDSDAKERKAAEQQLNQLEKQPGFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHE 74 (1010)
T ss_pred CChHHH------HHHHHHhcCCChHHHHHHHHHHHHhhcCCcHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccC
Confidence 676665 4444444445444 99999999999999999999999998777774 5888888999999999975
Q ss_pred -------CCHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhhccCCCCCCchhhHHHHHHHHhcccCCchhHH
Q 002003 99 -------LTADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQF 171 (983)
Q Consensus 99 -------l~~~~r~~lr~~ll~yl~~~~~~l~~~V~~~l~~~la~I~K~gW~d~~~~~~~~~~~~v~~~l~~~~s~~~~~ 171 (983)
+++++|.-+|+-++.++.+. |..+|.++..++-.|+|-..++ .|+.+++-+..++++ ++..+..
T Consensus 75 ~~g~~~~I~e~dk~~irenIl~~iv~~----p~~iRvql~~~l~~Ii~~D~p~----~Wp~l~d~i~~~Lqs-~~~~~vy 145 (1010)
T KOG1991|consen 75 APGRPFGIPEEDKAVIRENILETIVQV----PELIRVQLTACLNTIIKADYPE----QWPGLLDKIKNLLQS-QDANHVY 145 (1010)
T ss_pred CCCCcCCCChHHHHHHHHHHHHHHHhC----chHHHHHHHHHHHHHHhcCCcc----cchhHHHHHHHHhcC-cchhhHH
Confidence 57899999999999999875 6889999999999999998875 499999999999985 5667788
Q ss_pred HHHHHHHHHHhhhC--CCCCCCCCCChHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 002003 172 IGINFLESLVSEFS--PSTSSAMGLPREFHEQCRISLELDYLKTFYCWARDAAL 223 (983)
Q Consensus 172 igl~iL~~lv~Efs--~~~ss~~gl~~~~Hrk~~~sf~~~~L~~if~~~~~~L~ 223 (983)
-||-.|..|+.-+- .... .-..++ .+ +..++.|.+....+|.
T Consensus 146 ~aLl~l~qL~k~ye~k~~ee-----R~~l~~----~v-~~~fP~il~~~~~ll~ 189 (1010)
T KOG1991|consen 146 GALLCLYQLFKTYEWKKDEE-----RQPLGE----AV-EELFPDILQIFNGLLS 189 (1010)
T ss_pred HHHHHHHHHHHHHhhccccc-----cccHHH----HH-HHHHHHHHHHHHhhcc
Confidence 89999999987553 2211 111233 44 3457777777666665
No 10
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.86 E-value=5.1e-06 Score=96.01 Aligned_cols=585 Identities=15% Similarity=0.138 Sum_probs=317.7
Q ss_pred HHHHHHHHHhh---CCCC--HHHHHHHHHhhhcCCChHHHHHHHHhcC--CchhHHHHHHHHHHHHHhhccCCCCHHHHH
Q 002003 33 HSIEIACSSIQ---MHVN--PAAAEATILGLCQSPQPYKACQFILENS--QVANARFQAAAAIRDAAMREWSFLTADEKK 105 (983)
Q Consensus 33 ~~lE~~~~~ly---~~~~--r~~Ae~~L~~f~~~~~~~~~c~~ILe~S--~~~y~~f~A~~~L~~~v~~~W~~l~~~~r~ 105 (983)
+.|+++++-+. +|.. |+.+...+.+|+..|+.-...-+||-+. ...-++-.|--.|++-+.-.|+.++++...
T Consensus 10 ~~l~ql~~lLk~s~Spn~~~~~~~~~~leq~~~~pdfnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~~~~~~~~~~ 89 (885)
T KOG2023|consen 10 QGLQQLAQLLKNSQSPNSETRNNVQEKLEQFNLFPDFNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGHYNSIPSEVLD 89 (885)
T ss_pred HHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcccchhceeeEEEecccccchhHHHHhhhhHhccccccccCCChHHHH
Confidence 34555555554 4421 8999999999999999876666777554 445667777778999999999999998887
Q ss_pred HHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhhccCCCCCCchhhHHHHHHHHhcccCCchhHHHHHHHHHHHHhhhC
Q 002003 106 SLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFS 185 (983)
Q Consensus 106 ~lr~~ll~yl~~~~~~l~~~V~~~l~~~la~I~K~gW~d~~~~~~~~~~~~v~~~l~~~~s~~~~~igl~iL~~lv~Efs 185 (983)
-+|.-+++-+. +..+.+|+-.-.++-.|+-.|-.. .|+..++.+.+.+.+. +..+|
T Consensus 90 yiKs~~l~~lg----d~~~lIr~tvGivITTI~s~~~~~----~wpelLp~L~~~L~s~-d~n~~--------------- 145 (885)
T KOG2023|consen 90 YIKSECLHGLG----DASPLIRATVGIVITTIASTGGLQ----HWPELLPQLCELLDSP-DYNTC--------------- 145 (885)
T ss_pred HHHHHHHhhcc----CchHHHHhhhhheeeeeecccccc----cchhHHHHHHHHhcCC-ccccc---------------
Confidence 88877777543 334566655555555555444333 4777888888887631 11111
Q ss_pred CCCCCCCCCChHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHhcccccccCCCCCc
Q 002003 186 PSTSSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWDFQFDTSGRK 265 (983)
Q Consensus 186 ~~~ss~~gl~~~~Hrk~~~sf~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~LswdF~~~~~d~~ 265 (983)
--+| ..|.+|++=+-+.|..- +. +
T Consensus 146 -----------------EgA~--~AL~KIcEDsa~~lds~-------------------------------~~-~----- 169 (885)
T KOG2023|consen 146 -----------------EGAF--GALQKICEDSAQFLDSD-------------------------------VL-T----- 169 (885)
T ss_pred -----------------chhH--HHHHHHHhhhHHHHhhh-------------------------------cc-c-----
Confidence 1123 23555544222222210 00 0
Q ss_pred ccccccccccccccCCCCcccccccCCCccchHhhcccchHHHHHHHHHHHHhccccCCCCCCccchHHHHHHHHHHHhc
Q 002003 266 ISINVFSAGVRTETSSSKRSECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLIVQLCSL 345 (983)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~s~~~~t~~~p~~Wr~~l~~~~~l~llf~ly~~lr~~~~~~~~~~~~~l~~~al~cL~qLaSl 345 (983)
| | ++ -.+.-|+.+|..- .|.+.++|+.|++|+.-+
T Consensus 170 ----------r---------------p--------l~-~mipkfl~f~~h~-----------spkiRs~A~~cvNq~i~~ 204 (885)
T KOG2023|consen 170 ----------R---------------P--------LN-IMIPKFLQFFKHP-----------SPKIRSHAVGCVNQFIII 204 (885)
T ss_pred ----------C---------------c--------hH-HhHHHHHHHHhCC-----------ChhHHHHHHhhhhheeec
Confidence 0 0 11 1344566666541 378999999999998766
Q ss_pred cCCccCCCChhhHHHHHHHHHHhhhhhcCChhhhHHHhhhCCChhhHHHHHHHHHHHHhhcChhhHHHhhhccCchhhHH
Q 002003 346 TGTVFPSDNGKMQEHHLLQLLSGILEWVDPPDVVAQAIESGKSESEMLDGCRALLSIATVTTPFVFDRLLKSIRPFGTLT 425 (983)
Q Consensus 346 ~~~~f~~~~~~~r~~yl~~~l~~~~~il~~~~~~~~~~~~gl~~~~~~e~cr~L~rL~~~~~~~~l~~l~~s~~~~~~l~ 425 (983)
+..-+ ..++-.+++++...-... +++.--..||.+.-|..+.+ ..+. +.+.
T Consensus 205 ~~qal--------~~~iD~Fle~lFalanD~-----------~~eVRk~vC~alv~Llevr~-dkl~---------phl~ 255 (885)
T KOG2023|consen 205 QTQAL--------YVHIDKFLEILFALANDE-----------DPEVRKNVCRALVFLLEVRP-DKLV---------PHLD 255 (885)
T ss_pred CcHHH--------HHHHHHHHHHHHHHccCC-----------CHHHHHHHHHHHHHHHHhcH-Hhcc---------cchH
Confidence 63211 223444444443332211 11222367999887776653 2222 1233
Q ss_pred HHHHHHHHHHHHHhhcccccCcccHHHHHHHHHHHHHhhhcccccCCCCCCCh-hhhhhHHHHHHH--------------
Q 002003 426 LLSNLMCEVVKVLMMNNTEEGTWSWEARDILLDTWTTLLVSLDSTGRNVVLPL-EVRNAAASLFAL-------------- 490 (983)
Q Consensus 426 ~L~~Lt~~~i~~~~~~~~~~~~~~~es~~~LL~~W~~lv~~~~~~~~~~~~p~-~l~~~~~~I~~~-------------- 490 (983)
...+.+.+. +. ..|+..+-||. ++|..+.+.- .++ .+..|.+++.-.
T Consensus 256 ~IveyML~~----tq--d~dE~VALEAC----EFwla~aeqp--------i~~~~L~p~l~kliPvLl~~M~Ysd~D~~L 317 (885)
T KOG2023|consen 256 NIVEYMLQR----TQ--DVDENVALEAC----EFWLALAEQP--------ICKEVLQPYLDKLIPVLLSGMVYSDDDIIL 317 (885)
T ss_pred HHHHHHHHH----cc--CcchhHHHHHH----HHHHHHhcCc--------CcHHHHHHHHHHHHHHHHccCccccccHHH
Confidence 333333222 22 33344455554 5777776631 222 122222222222
Q ss_pred --------------------HHHhhhccccccc-cCCCcccc----hhhccHHHHHHHHHHHHHHHHHcHhhhHHHHHHH
Q 002003 491 --------------------IVESELKVASASA-MDDNGEFN----YLQASISAMDERLSSYALIARAAIDATVPLLTRL 545 (983)
Q Consensus 491 --------------------yi~srL~~~~~~~-~~d~d~de----~~e~d~~~~~eqL~~ia~l~R~~~~~t~~lL~~l 545 (983)
|.++|..--.... .||+|||| +-..||..++-.-..+..++-.-+++.++.+..+
T Consensus 318 L~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~Pl 397 (885)
T KOG2023|consen 318 LKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPL 397 (885)
T ss_pred hcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHHHHHHHHH
Confidence 1222211110000 11111111 1123466666666666667777788888999998
Q ss_pred HHHHHHHHhcccCCCCcchhhHHHHHHHHHHHhHhccCCCCCccccchhhhhhhhhhhhhccChHHHHHHHHHHHHHHhc
Q 002003 546 FSERFARLHQGRGMIDPTETLEELYSLLLITGHVLADEGEGEIPVVPNAIQTHFVDTIEAAKHPVVLLCGSIIKFAEWSL 625 (983)
Q Consensus 546 ~~~~~~~l~~~~~~~~~~~~~E~L~WLv~i~G~~Lad~~~gE~~~iP~~i~~~~~~~~~~~~d~v~~L~~~vl~l~~~~l 625 (983)
+.+.+.. =.|.+.=+|-+.-+. |.+-+. ..-....-+|+--++++...
T Consensus 398 Lk~~L~~----------------~~W~vrEagvLAlGA-----------IAEGcM---~g~~p~LpeLip~l~~~L~D-- 445 (885)
T KOG2023|consen 398 LKEHLSS----------------EEWKVREAGVLALGA-----------IAEGCM---QGFVPHLPELIPFLLSLLDD-- 445 (885)
T ss_pred HHHHcCc----------------chhhhhhhhHHHHHH-----------HHHHHh---hhcccchHHHHHHHHHHhcc--
Confidence 8876531 136665444321110 111110 00112223444444444332
Q ss_pred CccCcccCCCHHHHHHHHHHHHHHHHhhcCCccccccCCCCcCCCCCccccccchhhHHHhhhcCCCChhhHHHHHHHHH
Q 002003 626 DPEARASVFSPRLMEAIVWFLARWSQTYLMPLEEFRDSSTNLCHDTGYQHQSSTSRKALLSFFGEHNQGKPVLDIIVRIS 705 (983)
Q Consensus 626 ~~~~~~~~~Sp~L~~a~lwFl~~~~~~Yl~~~~~~~~~~~~~~~~~~y~~~s~~~~~~L~~~fg~~~~~~~vl~~lv~ki 705 (983)
. .|-+-.-.-|-|.||. .|+..+++ ++ --..|+.-+++++
T Consensus 446 -K-------kplVRsITCWTLsRys-~wv~~~~~-------------~~------------------~f~pvL~~ll~~l 485 (885)
T KOG2023|consen 446 -K-------KPLVRSITCWTLSRYS-KWVVQDSR-------------DE------------------YFKPVLEGLLRRL 485 (885)
T ss_pred -C-------ccceeeeeeeeHhhhh-hhHhcCCh-------------Hh------------------hhHHHHHHHHHHH
Confidence 1 1222233458888886 35444411 00 0124566677777
Q ss_pred HHhccCCCCchhHHHHHHHHHHHHHhccccchhhhhcchHHHHHHHHhhcccccccccchhhHHHHHHHHHHhhcCCCch
Q 002003 706 MTTLVSYPGEKDLQELTCNQLLHALVRRKNVCVHLVALGSWRELASAFANDKTLILLNSTNQRSLAQTLVLSAYGMRNSE 785 (983)
Q Consensus 706 ~~nL~~w~~e~~vi~~t~~~LL~~L~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~l~~~~~~~l~~aL~~~~~~~~d~~ 785 (983)
.. +..+|.+.+| .-|-.|-... +..|+ |....|+.+..- .|...--+.-.-||-|++.++-...+.=
T Consensus 486 lD------~NK~VQEAAc-sAfAtleE~A--~~eLV--p~l~~IL~~l~~--af~kYQ~KNLlILYDAIgtlAdsvg~~L 552 (885)
T KOG2023|consen 486 LD------SNKKVQEAAC-SAFATLEEEA--GEELV--PYLEYILDQLVF--AFGKYQKKNLLILYDAIGTLADSVGHAL 552 (885)
T ss_pred hc------ccHHHHHHHH-HHHHHHHHhc--cchhH--HHHHHHHHHHHH--HHHHHhhcceehHHHHHHHHHHHHHHhc
Confidence 76 5778999998 6666665543 33443 444444444321 1111000111348999999887665544
Q ss_pred hhhHHHHHHHHHHHHHHHHHhCCCCcccccCchhHHHHHHHHHHHhhchhhccCCCcH---HHHHHHHHhhHHHHHHHHH
Q 002003 786 SSNQYVRDLTRHATAYLVELSGKNDLKNVSQQPDIILLVSCLLERLRGAANATEPRTQ---KAIYEMGFSVMNPVLLLLE 862 (983)
Q Consensus 786 ~~~~~f~~~~~pl~~~~~~l~~~~~~~~~~~~~~vk~~i~~ll~~LrGia~a~~~~~~---~~lf~~i~~~l~~l~~l~~ 862 (983)
.+..|..-+|-||-++...+.+.. . .+.-+||||..|+.|....-. ..+|+=+..++..+..++-
T Consensus 553 n~~~YiqiLmPPLi~KW~~lsd~D--------K----dLfPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~ 620 (885)
T KOG2023|consen 553 NKPAYIQILMPPLIEKWELLSDSD--------K----DLFPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLA 620 (885)
T ss_pred CcHHHHHHhccHHHHHHHhcCccc--------c----hHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHH
Confidence 457799999999999998876532 1 257899999999999988533 3666666666666666666
Q ss_pred HhccchHHHH-------HHHHHHHHHHhhhc
Q 002003 863 VYKHESAVVY-------LLLKFVVDWVDGQI 886 (983)
Q Consensus 863 ~y~~~p~Vv~-------~iLkff~elv~~~~ 886 (983)
.-.++|.++. --|.|+.-++++.-
T Consensus 621 ~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg 651 (885)
T KOG2023|consen 621 KVQQDPTVEAPDKDFIIVSLDLLSGLAEGLG 651 (885)
T ss_pred hccCCccccCCCcceEEEeHHHHhHHHHHhh
Confidence 5566665544 45777777776553
No 11
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=98.81 E-value=5.4e-08 Score=96.51 Aligned_cols=147 Identities=16% Similarity=0.214 Sum_probs=115.2
Q ss_pred hhHHHHHHHHHHHHHHhhccCCCCCCchhhHHHHHHHHhcccCCchhHHHHHHHHHHHHhhhCCC-CCCCCCCChHHHHH
Q 002003 123 EGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFSPS-TSSAMGLPREFHEQ 201 (983)
Q Consensus 123 ~~~V~~~l~~~la~I~K~gW~d~~~~~~~~~~~~v~~~l~~~~s~~~~~igl~iL~~lv~Efs~~-~ss~~gl~~~~Hrk 201 (983)
|+||++|+++++|.|.|+.|++. |+++++++.+.++ .++.+...++.+|..+.+|+... +. ..+.+.++.
T Consensus 1 p~~i~~kl~~~l~~i~~~~~P~~----Wp~~l~~l~~~~~--~~~~~~~~~L~iL~~l~eEi~~~~~~---~~~~~r~~~ 71 (148)
T PF08389_consen 1 PPFIRNKLAQVLAEIAKRDWPQQ----WPDFLEDLLQLLQ--SSPQHLELVLRILRILPEEITDFRRS---SLSQERRRE 71 (148)
T ss_dssp -HHHHHHHHHHHHHHHHHHTTTT----STTHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHTSHCC---HSHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHChhh----CchHHHHHHHHhc--cchhHHHHHHHHHHHHHHHHHhhhch---hhhHHHHHH
Confidence 68999999999999999999884 9999999999998 47889999999999999999763 22 344566677
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHhcccccccCCCCCcccccccccccccccCC
Q 002003 202 CRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWDFQFDTSGRKISINVFSAGVRTETSS 281 (983)
Q Consensus 202 ~~~sf~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~LswdF~~~~~d~~~~~~~~~~~~~~~~~~ 281 (983)
.+..++.. .+.||....+++.+.... ....+...+|+++.++++|.....
T Consensus 72 l~~~l~~~-~~~i~~~l~~~l~~~~~~--------~~~~~~~~~L~~l~s~i~~~~~~~--------------------- 121 (148)
T PF08389_consen 72 LKDALRSN-SPDILEILSQILSQSSSE--------ANEELVKAALKCLKSWISWIPIEL--------------------- 121 (148)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHCHC--------CHHHHHHHHHHHHHHHTTTS-HHH---------------------
T ss_pred HHHHHHHH-HHHHHHHHHHHHHhhccc--------cHHHHHHHHHHHHHHHHHhCCHHH---------------------
Confidence 77777655 888888877777654311 126789999999999999876653
Q ss_pred CCcccccccCCCccchHhhcccchHHHHHHHHHHHHhccccCCCCCCccchHHHHHHH
Q 002003 282 SKRSECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLI 339 (983)
Q Consensus 282 ~~s~~~~t~~~p~~Wr~~l~~~~~l~llf~ly~~lr~~~~~~~~~~~~~l~~~al~cL 339 (983)
+.+..+++++|++.. ++.+...|.+||
T Consensus 122 ------------------i~~~~~l~~~~~~l~-------------~~~~~~~A~~cl 148 (148)
T PF08389_consen 122 ------------------IINSNLLNLIFQLLQ-------------SPELREAAAECL 148 (148)
T ss_dssp ------------------HHSSSHHHHHHHHTT-------------SCCCHHHHHHHH
T ss_pred ------------------hccHHHHHHHHHHcC-------------CHHHHHHHHHhC
Confidence 455668888887652 377888999997
No 12
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=98.56 E-value=2.6e-07 Score=81.09 Aligned_cols=67 Identities=27% Similarity=0.352 Sum_probs=62.8
Q ss_pred HHHHHHhhhcC-CChHHHHHHHH-hcCCchhHHHHHHHHHHHHHhhccC--------CCCHHHHHHHHHHHHHHHHH
Q 002003 51 AEATILGLCQS-PQPYKACQFIL-ENSQVANARFQAAAAIRDAAMREWS--------FLTADEKKSLIGFCLCFVMQ 117 (983)
Q Consensus 51 Ae~~L~~f~~~-~~~~~~c~~IL-e~S~~~y~~f~A~~~L~~~v~~~W~--------~l~~~~r~~lr~~ll~yl~~ 117 (983)
||+.|.+|++. |+.+..|..|+ +.+.+++++++|+..|++.|.++|. .+|+++|..||++|++.+.+
T Consensus 1 AE~~L~~~~~~~p~~~~~l~~il~~~~~~~~~R~~A~i~LKn~I~~~W~~~~~~~~~~~~~~~k~~Ik~~ll~~l~~ 77 (77)
T PF03810_consen 1 AEQQLKQFQKQNPGFWQYLLQILSSNSQDPEVRQLAAILLKNLIKKNWSPSKQKGWSQLPEEEKEQIKSQLLQLLLQ 77 (77)
T ss_dssp HHHHHHHHHHSCTCHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHSGGHHHHHHHHGSSHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHhhHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcCchhhccCCCCCCHHHHHHHHHHHHHHHcC
Confidence 89999999999 99999999999 5566899999999999999999999 99999999999999998853
No 13
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.45 E-value=0.0092 Score=71.08 Aligned_cols=138 Identities=14% Similarity=0.087 Sum_probs=97.8
Q ss_pred HhhCC-CC-HHHHHHHHHhhhcCCCh--HHHHHHHHhc-CCchhHHHHHHHHHHHHHh-----------hccCCCCHHHH
Q 002003 41 SIQMH-VN-PAAAEATILGLCQSPQP--YKACQFILEN-SQVANARFQAAAAIRDAAM-----------REWSFLTADEK 104 (983)
Q Consensus 41 ~ly~~-~~-r~~Ae~~L~~f~~~~~~--~~~c~~ILe~-S~~~y~~f~A~~~L~~~v~-----------~~W~~l~~~~r 104 (983)
...+| +| |++||+.|.+++++.-+ +...-.+|-+ -+++++++.|.-.|++.++ .+|..++.+-|
T Consensus 9 ~tlSpD~n~~~~Ae~~l~~~~~~nf~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qRWl~l~~e~r 88 (859)
T KOG1241|consen 9 KTLSPDQNVRKRAEKQLEQAQSQNFPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQRWLQLPAEIR 88 (859)
T ss_pred HHcCCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHHHHHcCCHHHH
Confidence 34444 23 99999999999976533 3334455544 5678999999999998766 57999999999
Q ss_pred HHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhhccCCCCCCchhhHHHHHHHHhcccCCchhHHHHHHHHHHHHhhh
Q 002003 105 KSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEF 184 (983)
Q Consensus 105 ~~lr~~ll~yl~~~~~~l~~~V~~~l~~~la~I~K~gW~d~~~~~~~~~~~~v~~~l~~~~s~~~~~igl~iL~~lv~Ef 184 (983)
.++|++++.-+. +..+.+.+...+++|.|..-+-|.+ .|+.++..+..-+....+..+..-.|.-+.-+.++.
T Consensus 89 eqVK~~il~tL~----~~ep~~~s~Aaq~va~IA~~ElP~n---~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i 161 (859)
T KOG1241|consen 89 EQVKNNILRTLG----SPEPRRPSSAAQCVAAIACIELPQN---QWPELIVTLVSNVGEEQASMVKESSLEALGYICEDI 161 (859)
T ss_pred HHHHHHHHHHcC----CCCCCccchHHHHHHHHHHhhCchh---hCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccC
Confidence 999999998763 2456677888899999988888774 688898888777753222323333444444444444
Q ss_pred C
Q 002003 185 S 185 (983)
Q Consensus 185 s 185 (983)
.
T Consensus 162 ~ 162 (859)
T KOG1241|consen 162 D 162 (859)
T ss_pred C
Confidence 4
No 14
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.37 E-value=0.0013 Score=76.15 Aligned_cols=131 Identities=15% Similarity=0.126 Sum_probs=103.5
Q ss_pred HHHHHHHHhhhcCCChHHHHHHHHhcCCchhHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHcCCCChhHHHH
Q 002003 49 AAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMQHASSPEGYVQA 128 (983)
Q Consensus 49 ~~Ae~~L~~f~~~~~~~~~c~~ILe~S~~~y~~f~A~~~L~~~v~~~W~~l~~~~r~~lr~~ll~yl~~~~~~l~~~V~~ 128 (983)
..|-++|.+|++++++|..|..||..-...++..||+++++..+.+....+|+.+-.++|+-++..+..-. +.++-++.
T Consensus 2 ~~A~~~L~~FQ~S~~aW~i~~eiL~~~~~~~~~~FaaqTlr~Ki~~~F~~Lp~~~~~slrdsl~thl~~l~-~~~~~i~t 80 (559)
T KOG2081|consen 2 EKANNWLGNFQKSNDAWQICEEILSQKCDVEALLFAAQTLRNKIQYDFSELPPLTHASLRDSLITHLKELH-DHPDVIRT 80 (559)
T ss_pred chHhHHHHHhCCChHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhhHHhcCcchhHHHHHHHHHHHHHHH-hCCchHHH
Confidence 46889999999999999999999998888899999999999999999999999999999998888777666 45558888
Q ss_pred HHHHHHHHHHhhccCCCCCCchhhHHHHHHHHhcccCCchhHHHHHHHHHHHHhhhCCCC
Q 002003 129 KISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFSPST 188 (983)
Q Consensus 129 ~l~~~la~I~K~gW~d~~~~~~~~~~~~v~~~l~~~~s~~~~~igl~iL~~lv~Efs~~~ 188 (983)
+++-.+|.+.=+ . .+|.+-+.++.+..++ .+.....-+.+|..+=+|+.+.+
T Consensus 81 QL~vavA~Lal~----~--~~W~n~I~e~v~~~~~--~~~~~~~lLeiL~VlPEE~~~~~ 132 (559)
T KOG2081|consen 81 QLAVAVAALALH----M--PEWVNPIFELVRALSN--KHPAVPILLEILKVLPEETRDIR 132 (559)
T ss_pred HHHHHHHHHHHH----h--HhhcchHHHHHHHhhc--CCccHHHHHHHHHhCcHhhcchh
Confidence 888777766321 1 1355566676666652 33335577888888888887653
No 15
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.87 E-value=0.012 Score=70.71 Aligned_cols=162 Identities=13% Similarity=0.149 Sum_probs=120.9
Q ss_pred HHHHHHHHHhhhcCCChHHHHHHHHhcCC-chhHHHHHHHHHHHHHhhccC-------CCCHHHHHHHHHHHHHHHHHcC
Q 002003 48 PAAAEATILGLCQSPQPYKACQFILENSQ-VANARFQAAAAIRDAAMREWS-------FLTADEKKSLIGFCLCFVMQHA 119 (983)
Q Consensus 48 r~~Ae~~L~~f~~~~~~~~~c~~ILe~S~-~~y~~f~A~~~L~~~v~~~W~-------~l~~~~r~~lr~~ll~yl~~~~ 119 (983)
|+-||+.|.+...++...-..-.++++++ .+..+.-|+..+++.+.|+|. .+..++|..||.-+++...+.
T Consensus 22 rk~aEr~L~~~e~q~~y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~~i~~~~~e~ikslIv~lMl~s- 100 (960)
T KOG1992|consen 22 RKPAERALRSLEGQQNYPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPIKIIEEDREQIKSLIVTLMLSS- 100 (960)
T ss_pred CchHHHHHHHhccCCCchHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCccccchhHHHHHHHHHHHHHhcC-
Confidence 99999999999988777667778888887 668899999999999999994 477789999999999987664
Q ss_pred CCChhHHHHHHHHHHHHHHhhccCCCCCCchhhHHHHHHHHhcccCCchhHHHHHHHHHH-HHhhhCCC-CCCCCCCChH
Q 002003 120 SSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLES-LVSEFSPS-TSSAMGLPRE 197 (983)
Q Consensus 120 ~~l~~~V~~~l~~~la~I~K~gW~d~~~~~~~~~~~~v~~~l~~~~s~~~~~igl~iL~~-lv~Efs~~-~ss~~gl~~~ 197 (983)
+.-+..++..++-.|.|+++|+. |++.++++...+++ +--+...|+.-..+ +---|... +|... |.
T Consensus 101 ---~~~iQ~qlseal~~Ig~~DFP~k----WptLl~dL~~~ls~--~D~~~~~gVL~tahsiFkr~R~efrSdaL---~~ 168 (960)
T KOG1992|consen 101 ---PFNIQKQLSEALSLIGKRDFPDK----WPTLLPDLVARLSS--GDFNVINGVLVTAHSIFKRYRPEFRSDAL---WL 168 (960)
T ss_pred ---cHHHHHHHHHHHHHHhccccchh----hHHHHHHHHhhccc--cchHHHHHHHHHHHHHHHhcCcccccHHH---HH
Confidence 45678888999999999999996 99999999999973 33334455444444 33333333 33222 44
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHH
Q 002003 198 FHEQCRISLELDYLKTFYCWARDAAL 223 (983)
Q Consensus 198 ~Hrk~~~sf~~~~L~~if~~~~~~L~ 223 (983)
.=.+|-..| ..-|.++|+...+..+
T Consensus 169 EIK~vLd~f-~~Plt~Lf~~t~~l~~ 193 (960)
T KOG1992|consen 169 EIKLVLDRF-AEPLTDLFRKTMELIQ 193 (960)
T ss_pred HHHHHHHhh-HhHHHHHHHHHHHHHh
Confidence 445666666 3457777777766664
No 16
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=0.13 Score=61.39 Aligned_cols=142 Identities=15% Similarity=0.200 Sum_probs=112.4
Q ss_pred HHHHHHhhCCCC-HHHHHHHHHhhhcCCChHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhccCC-----CCHHHHHHHH
Q 002003 36 EIACSSIQMHVN-PAAAEATILGLCQSPQPYKACQFILENS-QVANARFQAAAAIRDAAMREWSF-----LTADEKKSLI 108 (983)
Q Consensus 36 E~~~~~ly~~~~-r~~Ae~~L~~f~~~~~~~~~c~~ILe~S-~~~y~~f~A~~~L~~~v~~~W~~-----l~~~~r~~lr 108 (983)
+...+.+-+.++ |..||..|.++.+.|...-.|-+|+..- -...++.-|+--+++.|+|.|.+ .+++++.+.|
T Consensus 7 qcf~qTldada~~rt~AE~~Lk~leKqPgFv~all~i~s~de~~lnvklsAaIYfKNkI~rsWss~~d~~i~~Dek~e~K 86 (970)
T COG5656 7 QCFLQTLDADAGKRTIAEAMLKDLEKQPGFVMALLHICSKDEGDLNVKLSAAIYFKNKIIRSWSSKRDDGIKADEKSEAK 86 (970)
T ss_pred HHHHHHhccCcchhhHHHHHHHHhhcCCcHHHHHHHHHhhccCCchhhHHHHHHHhhhhhhhhhhcccCCCCCcccHHHH
Confidence 333444444444 9999999999999999999999999765 45699999999999999999977 5567888999
Q ss_pred HHHHHHHHHcCCCChhHHHHHHHHHHHHHHhhccCCCCCCchhhHHHHHHHHhcccCCchhHHHHHHHHHHHHh
Q 002003 109 GFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVS 182 (983)
Q Consensus 109 ~~ll~yl~~~~~~l~~~V~~~l~~~la~I~K~gW~d~~~~~~~~~~~~v~~~l~~~~s~~~~~igl~iL~~lv~ 182 (983)
.|+.+-+......-+.-.|..+...+..|.--.|+.. -|. ++.....++++ +...|...||..+.++-.
T Consensus 87 ~~lienil~v~l~sp~~tr~~l~ail~~I~seD~ps~---~wg-l~p~~~nll~s-~ea~~vy~gLlcl~elfk 155 (970)
T COG5656 87 KYLIENILDVFLYSPEVTRTALNAILVNIFSEDKPSD---LWG-LFPKAANLLRS-SEANHVYTGLLCLEELFK 155 (970)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHhccccCchh---hcc-cchHHHHhhcc-cchhHHHHHHHHHHHHHH
Confidence 9998888777644556667778888889988888853 376 88888899974 455677789988887754
No 17
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.25 E-value=0.0071 Score=72.16 Aligned_cols=156 Identities=11% Similarity=0.057 Sum_probs=118.3
Q ss_pred HHHHHHHHHhhhcCCChHHHHHHHHhc-CCchhHHHHHHHHHHHHHhhcc-----CCCCHHHHHHHHHHHHHHHHHcCCC
Q 002003 48 PAAAEATILGLCQSPQPYKACQFILEN-SQVANARFQAAAAIRDAAMREW-----SFLTADEKKSLIGFCLCFVMQHASS 121 (983)
Q Consensus 48 r~~Ae~~L~~f~~~~~~~~~c~~ILe~-S~~~y~~f~A~~~L~~~v~~~W-----~~l~~~~r~~lr~~ll~yl~~~~~~ 121 (983)
++-||+.|.++...|........|.-+ +...-+++.|+--+++.|.|.| ..+|+++|..||.-++...- .
T Consensus 17 ~k~AE~qLr~WEtqPGF~~~L~sI~l~~t~dv~vRWmAviyfKNgIdryWR~~~~~sl~~EEK~~iR~~Ll~~~~----E 92 (978)
T KOG1993|consen 17 VKPAEAQLRQWETQPGFFSKLYSIFLSKTNDVSVRWMAVIYFKNGIDRYWRRNTKMSLPPEEKDFIRCNLLLHSD----E 92 (978)
T ss_pred chhHHHHHHhhccCCcHHHHHHHHHhccccceeeeeehhhhHhcchhHHhhcCCcccCCHHHHHHHHHHHHHhcc----c
Confidence 899999999999999998887766544 4555899999999999999999 46999999999988776543 2
Q ss_pred ChhHHHHHHHHHHHHHHhhccCCCCCCchhhHHHHHHHHhcccC---CchhHHHHHHHHHHHHhhhCCCCCCCCCCChHH
Q 002003 122 PEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIH---GVDTQFIGINFLESLVSEFSPSTSSAMGLPREF 198 (983)
Q Consensus 122 l~~~V~~~l~~~la~I~K~gW~d~~~~~~~~~~~~v~~~l~~~~---s~~~~~igl~iL~~lv~Efs~~~ss~~gl~~~~ 198 (983)
..+.+.-+.+.++++|.+.++|- +|++.++++.+.+++++ +...+--.+..|..++-++++.+=
T Consensus 93 ~~nQlaiQ~AvlisrIARlDyPr----eWP~Lf~~L~~~Lq~~~~~gD~~~~~RiLi~l~~ilK~Lat~RL--------- 159 (978)
T KOG1993|consen 93 ENNQLAIQNAVLISRIARLDYPR----EWPDLFPDLLGQLQSSLGTGDSLVQHRILITLHHILKALATKRL--------- 159 (978)
T ss_pred chhHHHHHHHHHHHHHHhcCCCc----cchhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhHH---------
Confidence 44667778888888888877654 79999999999888642 345555667788888888876421
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHH
Q 002003 199 HEQCRISLELDYLKTFYCWARDAA 222 (983)
Q Consensus 199 Hrk~~~sf~~~~L~~if~~~~~~L 222 (983)
-++++.|.+. -+.||.+....+
T Consensus 160 -~a~rk~F~el-~~~I~~~l~~~l 181 (978)
T KOG1993|consen 160 -LADRKAFYEL-APEILTILAPIL 181 (978)
T ss_pred -hhhhHHHHHH-hHHHHHHHHHHH
Confidence 2667788544 566666443333
No 18
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=96.44 E-value=0.2 Score=61.42 Aligned_cols=132 Identities=9% Similarity=0.100 Sum_probs=102.7
Q ss_pred CCCHHHHHHHHHhhhcCCChHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhccC-----CCCHHHHHHHHHHHHHHHHHc
Q 002003 45 HVNPAAAEATILGLCQSPQPYKACQFILENS-QVANARFQAAAAIRDAAMREWS-----FLTADEKKSLIGFCLCFVMQH 118 (983)
Q Consensus 45 ~~~r~~Ae~~L~~f~~~~~~~~~c~~ILe~S-~~~y~~f~A~~~L~~~v~~~W~-----~l~~~~r~~lr~~ll~yl~~~ 118 (983)
|+.++.||+-|.++...++...+.+.|--.. .+--.+.-|+--+++.|.++|. .+.++++.-||.-+++.+.+.
T Consensus 18 p~s~k~AE~~Lrqwe~q~gF~~kL~~I~~~~~~~m~lR~~a~i~fkn~I~~~W~~~~~~~i~p~e~v~IR~~l~~lii~s 97 (947)
T COG5657 18 PPSVKCAEERLRQWEKQHGFALKLLSINLSAFNSMSLRWAALIQFKNYIDKHWREENGNSILPDENVLIRDELFSLIISS 97 (947)
T ss_pred CchHhhHHHHHHhhhccccHHHHHHHHHhccccchhHHHHHHHHHHhhHHHHhhhhcccCCCCccchHHHHHHHHHHHcc
Confidence 3349999999999999999877777776555 4557888888899999999995 367777889999999998876
Q ss_pred CCCChhHHHHHHHHHHHHHHhhccCCCCCCchhhHHHHHHHHhcccCCchhHHHHHHHHHHHHhhhC
Q 002003 119 ASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFS 185 (983)
Q Consensus 119 ~~~l~~~V~~~l~~~la~I~K~gW~d~~~~~~~~~~~~v~~~l~~~~s~~~~~igl~iL~~lv~Efs 185 (983)
. .+..-+...++++|+....|| +|++.++++...++. ++-....-.+..+.+++.++.
T Consensus 98 ~----n~l~iq~a~avs~IA~~DfPd----eWpTL~~DL~~~Ls~-~D~~tn~~~L~~~h~Ifk~~r 155 (947)
T COG5657 98 S----NQLQIQNALAVSRIARLDFPD----EWPTLVPDLLSLLSE-KDMVTNENSLRVLHHIFKRLR 155 (947)
T ss_pred c----chHHHHHHHHHHHHHhccCcc----cchhHHHHHHhhhcc-cchHHHHHHHHHHHHHHHHHh
Confidence 5 333338889999999999888 599999999999984 444444455555666665554
No 19
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=93.17 E-value=30 Score=43.33 Aligned_cols=137 Identities=12% Similarity=0.094 Sum_probs=98.0
Q ss_pred HHHhhCC-CC-HHHHHHHHHhhhcCCChHHH-HHHHHhcCCchhHHHHHHHHHHHHHhhccCC----------CCHHHHH
Q 002003 39 CSSIQMH-VN-PAAAEATILGLCQSPQPYKA-CQFILENSQVANARFQAAAAIRDAAMREWSF----------LTADEKK 105 (983)
Q Consensus 39 ~~~ly~~-~~-r~~Ae~~L~~f~~~~~~~~~-c~~ILe~S~~~y~~f~A~~~L~~~v~~~W~~----------l~~~~r~ 105 (983)
.....++ ++ |.+||..+.++...++.-.+ |.-.+..-.+--.+=.|+-.|++.+..+|.. -+.+.|.
T Consensus 10 L~~~ls~d~~vr~~AE~~l~qle~~~~f~~aL~~va~~~~~sl~lRQ~A~v~L~~yie~hW~~~~E~fr~~~~~~e~~K~ 89 (1005)
T KOG2274|consen 10 LSGSLSADQNVRSQAETQLKQLELTEGFGVALAEVAANKDASLPLRQIALVLLKRYIEKHWSPNFEAFRYPLIVSEEVKA 89 (1005)
T ss_pred HHhhcCCChhHHHHHHHHHhccccchHHHHHHHHHHhCcccCchHHHHHHHHHHHHHHHhCCChHhhccCCCcccHHHHH
Confidence 3344444 34 99999999999987775444 5555555344455556778999999999964 3455677
Q ss_pred HHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhhccCCCCCCchhhHHHHHHHHhcccCCchhHHHHHHHHHHHHhhh
Q 002003 106 SLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEF 184 (983)
Q Consensus 106 ~lr~~ll~yl~~~~~~l~~~V~~~l~~~la~I~K~gW~d~~~~~~~~~~~~v~~~l~~~~s~~~~~igl~iL~~lv~Ef 184 (983)
-||+-+++-+. +-.+.+++...-.+..|..-.||| +|+..+.-|.+.+.+ ++.++.-=+++.|.+++.|-
T Consensus 90 ~IRe~Ll~~l~----~sn~ki~~~vay~is~Ia~~D~Pd----~WpElv~~i~~~l~~-~n~n~i~~am~vL~el~~ev 159 (1005)
T KOG2274|consen 90 LIREQLLNLLD----DSNSKIRSAVAYAISSIAAVDYPD----EWPELVPFILKLLSS-GNENSIHGAMRVLAELSDEV 159 (1005)
T ss_pred HHHHHHHhhhh----ccccccchHHHHHHHHHHhccCch----hhHHHHHHHHHHHhc-cchhhhhhHHHHHHHHHHHH
Confidence 77777777665 345778888888899999999999 499999999999985 55555545566666655543
No 20
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=71.29 E-value=2.4e+02 Score=34.04 Aligned_cols=119 Identities=14% Similarity=0.143 Sum_probs=86.2
Q ss_pred HHHHHHHh-hCC-CC-HHHHHHHHHhhhcCCChHH----HHHHHHhcCCchhHHHHHHHHHHHHHh-----------hcc
Q 002003 35 IEIACSSI-QMH-VN-PAAAEATILGLCQSPQPYK----ACQFILENSQVANARFQAAAAIRDAAM-----------REW 96 (983)
Q Consensus 35 lE~~~~~l-y~~-~~-r~~Ae~~L~~f~~~~~~~~----~c~~ILe~S~~~y~~f~A~~~L~~~v~-----------~~W 96 (983)
+.++.+.- ..| +| |..||+.|+++++.. ..+ ..+-+-+.-+++|.++.|.-+|++.+. .+|
T Consensus 6 f~~l~~n~vLspD~n~rl~aE~ql~~l~~~d-F~qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW 84 (858)
T COG5215 6 FRCLGKNHVLSPDPNARLRAEAQLLELQSGD-FEQFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGCSQRW 84 (858)
T ss_pred HHHHHhcccCCCCCCccccHHHHHHHhcccc-HHHHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhh
Confidence 34444442 233 34 999999999998643 222 134444667899999999999998765 579
Q ss_pred CCCCHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhhccCCCCCCchhhHHHHHHHHh
Q 002003 97 SFLTADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAV 161 (983)
Q Consensus 97 ~~l~~~~r~~lr~~ll~yl~~~~~~l~~~V~~~l~~~la~I~K~gW~d~~~~~~~~~~~~v~~~l 161 (983)
..++.+-|.++|.-.+.-+.+ ..+-.-+...+++|.|.+-+-+.. .|+.++.++....
T Consensus 85 ~~~~~E~k~qvK~~al~aL~s----~epr~~~~Aaql~aaIA~~Elp~~---~wp~lm~~mv~nv 142 (858)
T COG5215 85 LGMRHESKEQVKGMALRALKS----PEPRFCTMAAQLLAAIARMELPNS---LWPGLMEEMVRNV 142 (858)
T ss_pred ccCCHHHHHHHHHHHHHHhcC----CccHHHHHHHHHHHHHHHhhCccc---cchHHHHHHHHhc
Confidence 999999999888888776532 344556677899999999888774 5888888776655
No 21
>PF03991 Prion_octapep: Copper binding octapeptide repeat; InterPro: IPR020949 Prion protein (PrP-c) [, , ] is a small glycoprotein found in high quantity in the brain of animals infected with certain degenerative neurological diseases, such as sheep scrapie and bovine spongiform encephalopathy (BSE), and the human dementias Creutzfeldt-Jacob disease (CJD) and Gerstmann-Straussler syndrome (GSS). PrP-c is encoded in the host genome and is expressed both in normal and infected cells. During infection, however, the PrP-c molecule become altered (conformationally rather than at the amino acid level) to an abnormal isoform, PrP-sc. In detergent-treated brain extracts from infected individuals, fibrils composed of polymers of PrP-sc, namely scrapie-associated fibrils or prion rods, can be evidenced by electron microscopy. The precise function of the normal PrP isoform in healthy individuals remains unknown. Several results, mainly obtained in transgenic animals, indicate that PrP-c might play a role in long-term potentiation, in sleep physiology, in oxidative burst compensation (PrP can fix four Cu2+ through its octarepeat domain), in interactions with the extracellular matrix (PrP-c can bind to the precursor of the laminin receptor, LRP), in apoptosis and in signal transduction (costimulation of PrP-c induces a modulation of Fyn kinase phosphorylation) []. The normal isoform, PrP-c, is anchored at the cell membrane, in rafts, through a glycosyl phosphatidyl inositol (GPI); its half-life at the cell surface is 5 h, after which the protein is internalised through a caveolae-dependent mechanism and degraded in the endolysosome compartment. Conversion between PrP-c and PrP-sc occurs likely during the internalisation process. This repeat is found at the amino terminus of mammalian prion proteins. It has been shown to bind to copper [].
Probab=65.73 E-value=3.1 Score=20.09 Aligned_cols=7 Identities=43% Similarity=0.587 Sum_probs=5.1
Q ss_pred CCCCCCC
Q 002003 10 GGGGDDG 16 (983)
Q Consensus 10 ~~~~~~~ 16 (983)
-||||+|
T Consensus 2 hgG~Wgq 8 (8)
T PF03991_consen 2 HGGGWGQ 8 (8)
T ss_pred CCCcCCC
Confidence 3788875
No 22
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=61.16 E-value=78 Score=35.02 Aligned_cols=172 Identities=10% Similarity=0.069 Sum_probs=103.9
Q ss_pred HHhhccCCCCCCchhhHHHHHHHHhcccCCchhHHHHHHHHHHHHhhhCCCCCCCCCCChHHHHHHHHHhhhhhHHHHHH
Q 002003 137 LMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFSPSTSSAMGLPREFHEQCRISLELDYLKTFYC 216 (983)
Q Consensus 137 I~K~gW~d~~~~~~~~~~~~v~~~l~~~~s~~~~~igl~iL~~lv~Efs~~~ss~~gl~~~~Hrk~~~sf~~~~L~~if~ 216 (983)
-+++.|.+ ..|.-++.-+..++.. .+++....||.+|..++....... -..|++.+|.++|.
T Consensus 107 ~~~~~~i~---~~~~liiP~iL~llDD-~~~~~K~~G~~lL~~ll~~~~~~~--------------~~~L~~tGl~~v~~ 168 (282)
T PF10521_consen 107 QLDRPWIS---QHWPLIIPPILNLLDD-YSPEIKIQGCQLLHHLLEKVPAAE--------------WDILRRTGLFSVFE 168 (282)
T ss_pred cCCcchHH---HhhhHHHhhHHHHhcC-CCHHHHHHHHHHHHHHHHhCChhh--------------hHHHHHcChHHHHH
Confidence 56666666 3576677888888874 468889999999999998775432 23677888888877
Q ss_pred HHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHhcccccccCCCCCcccccccccccccccCCCCcccccccCCCccc
Q 002003 217 WARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWDFQFDTSGRKISINVFSAGVRTETSSSKRSECIIVQPGPAW 296 (983)
Q Consensus 217 ~~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~LswdF~~~~~d~~~~~~~~~~~~~~~~~~~~s~~~~t~~~p~~W 296 (983)
-+ |....-..|+.+...+...++..+..++..++.=.|..... .
T Consensus 169 ~a---l~~~L~~LP~~tp~~~s~~Ll~~ay~~L~~L~~~~~~~~~~---------------------------------~ 212 (282)
T PF10521_consen 169 DA---LFPCLYYLPPITPEDESLELLQAAYPALLSLLKTQENDDSN---------------------------------P 212 (282)
T ss_pred HH---HHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHhhccCCcc---------------------------------c
Confidence 54 33344333444443455678888888887775544422111 1
Q ss_pred hHhhcccchHHHHHHHHHHHHhccccCCCCCCccchHHHHHHHHHHHhccCCccCCCChhhHHHHHHHHHHhhhhhcCCh
Q 002003 297 CDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLIVQLCSLTGTVFPSDNGKMQEHHLLQLLSGILEWVDPP 376 (983)
Q Consensus 297 r~~l~~~~~l~llf~ly~~lr~~~~~~~~~~~~~l~~~al~cL~qLaSl~~~~f~~~~~~~r~~yl~~~l~~~~~il~~~ 376 (983)
|....+.-+-+.++.-+..... ...+.+....++-|..+...-|- .-.+|+.+++--+.++|.+|
T Consensus 213 r~~~l~~~l~e~IL~~~~~~~~-------~~~~~l~~~ll~~l~~~i~~lGi--------~~~~hL~rii~~l~~~l~np 277 (282)
T PF10521_consen 213 RSTWLDKILREGILSSMEHESS-------FSYPRLRTVLLQQLPPIIDELGI--------SSVKHLQRIIPVLSQILENP 277 (282)
T ss_pred chHHHHHHHHHHHhhhceeccc-------cCchhHHHHHHHHHHHHHHHhcc--------HHHHHHHHHHHHHHHHhcCC
Confidence 1112222222323222221110 01256667777777776665441 23679999999999999887
Q ss_pred h
Q 002003 377 D 377 (983)
Q Consensus 377 ~ 377 (983)
.
T Consensus 278 f 278 (282)
T PF10521_consen 278 F 278 (282)
T ss_pred C
Confidence 4
No 23
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=51.18 E-value=2e+02 Score=32.18 Aligned_cols=86 Identities=15% Similarity=0.126 Sum_probs=48.9
Q ss_pred HHHHHhhhcCC--ChHHHHHHHHhcCCchhHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHcCCCChhHHHHH
Q 002003 52 EATILGLCQSP--QPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMQHASSPEGYVQAK 129 (983)
Q Consensus 52 e~~L~~f~~~~--~~~~~c~~ILe~S~~~y~~f~A~~~L~~~v~~~W~~l~~~~r~~lr~~ll~yl~~~~~~l~~~V~~~ 129 (983)
.+.+..+...+ ++|.....+|+++ ..|+...|+..|...+...=..- .....++-.++++++.+.......-+..-
T Consensus 92 ~~~~~~~~~~~~~~~~~~fl~ll~~~-D~~i~~~a~~iLt~Ll~~~~~~~-~~~~~~~l~~ll~~L~~~l~~~~~~~~~~ 169 (312)
T PF03224_consen 92 VELFLELAKQDDSDPYSPFLKLLDRN-DSFIQLKAAFILTSLLSQGPKRS-EKLVKEALPKLLQWLSSQLSSSDSELQYI 169 (312)
T ss_dssp HHHHHHHHH-TTH--HHHHHHH-S-S-SHHHHHHHHHHHHHHHTSTTT---HHHHHHHHHHHHHHHH-TT-HHHH---HH
T ss_pred HHHHHHhcccccchhHHHHHHHhcCC-CHHHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHHHHHHhhcCCCcchHHH
Confidence 33455555433 3788877777655 89999999999999988752211 11113666888888887543223334455
Q ss_pred HHHHHHHHHh
Q 002003 130 ISSVAAQLMK 139 (983)
Q Consensus 130 l~~~la~I~K 139 (983)
.+++++.++|
T Consensus 170 av~~L~~LL~ 179 (312)
T PF03224_consen 170 AVQCLQNLLR 179 (312)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhC
Confidence 5666666664
No 24
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=41.76 E-value=2.9e+02 Score=28.33 Aligned_cols=102 Identities=17% Similarity=0.102 Sum_probs=63.9
Q ss_pred CCCCChhhHHHHHHHHHHHHHHhhCCC-CHHHHHHHHHhhhcCCChHHHHHHHHhcCCchhHHHHHHHHHHHHHhhccCC
Q 002003 20 GGPADLAKLQSIMHSIEIACSSIQMHV-NPAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSF 98 (983)
Q Consensus 20 ~~~md~~~l~~~~~~lE~~~~~ly~~~-~r~~Ae~~L~~f~~~~~~~~~c~~ILe~S~~~y~~f~A~~~L~~~v~~~W~~ 98 (983)
.+..|++.+ .++.++..++..++ +..+|++.|.+..+.|.+|+.-..++-. -.++..+--...-.|..
T Consensus 59 ~~~~nl~~l----~~v~~l~~~~~~~~~~~~ea~~~L~~I~~~~~~y~~~~~~l~~-------~l~~~~fa~lfgg~~~~ 127 (193)
T PF06738_consen 59 PRGVNLDKL----AAVNRLSRRIVAGQLSLEEAIERLDEIDREPPRYPPWLVILAA-------GLASAAFALLFGGSWID 127 (193)
T ss_pred CCCcCHHHH----HHHHHHHHHHhcCCCCHHHHHHHHHHHhhCCCCCCHHHHHHHH-------HHHHHHHHHHHCCCHHH
Confidence 356788887 89999999998764 6899999999999999776654444421 12222222233344544
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHH
Q 002003 99 LTADEKKSLIGFCLCFVMQHASSPEGYVQAKISSV 133 (983)
Q Consensus 99 l~~~~r~~lr~~ll~yl~~~~~~l~~~V~~~l~~~ 133 (983)
+-..--..+--+++....++- ...+++.+-+.-.
T Consensus 128 ~~~a~i~g~~~~~~~~~~~r~-~~~~~~~~~~aa~ 161 (193)
T PF06738_consen 128 MIVAFILGLLVGLLRQLLSRR-RLNSFIQEFIAAF 161 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHhc-cchHHHHHHHHHH
Confidence 444445566666666666665 4565655554333
No 25
>COG1698 Uncharacterized protein conserved in archaea [Function unknown]
Probab=37.02 E-value=1.1e+02 Score=27.51 Aligned_cols=68 Identities=22% Similarity=0.188 Sum_probs=35.2
Q ss_pred CCCChhhHHHHHHHHHHHHHHhhCCCC-HHHHHHHHHhhhcC-CChHHH---HHHHHhc-CCchhHHHHHHHHH
Q 002003 21 GPADLAKLQSIMHSIEIACSSIQMHVN-PAAAEATILGLCQS-PQPYKA---CQFILEN-SQVANARFQAAAAI 88 (983)
Q Consensus 21 ~~md~~~l~~~~~~lE~~~~~ly~~~~-r~~Ae~~L~~f~~~-~~~~~~---c~~ILe~-S~~~y~~f~A~~~L 88 (983)
.+|+.+-....++-|+.+.+.--.|.| |+.|++....+++- ..+.-+ .-.|||. |+.|..-++|=+.+
T Consensus 8 ~~d~~e~i~q~~~lL~~Ii~DttVPRNIRraA~~a~e~L~~e~e~p~vRaAtaIsiLeeisnDPNmP~h~RT~i 81 (93)
T COG1698 8 MNDSEEKINQVMQLLDEIIQDTTVPRNIRRAAEEAKEALNNEGESPAVRAATAISILEEISNDPNMPLHARTLI 81 (93)
T ss_pred hhhhHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCCCchHHHHHH
Confidence 445555543333333333332223445 89999999888862 233222 3345543 55566666655444
No 26
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=35.93 E-value=8.2e+02 Score=29.14 Aligned_cols=38 Identities=24% Similarity=0.392 Sum_probs=29.9
Q ss_pred chHHHHHHHHHHHHHHhhhccccCccchHHHHHHHHHH
Q 002003 867 ESAVVYLLLKFVVDWVDGQISYLEVQETNIVIDFCTRL 904 (983)
Q Consensus 867 ~p~Vv~~iLkff~elv~~~~~~l~~~~~~~Lf~~~~~l 904 (983)
+......+|.|+.++++....+++.+....+.+.+..+
T Consensus 147 ~~~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~i 184 (464)
T PF11864_consen 147 EESNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTI 184 (464)
T ss_pred hhhhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Confidence 55667789999999999999888888777776665555
No 27
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=32.61 E-value=2.1e+02 Score=27.90 Aligned_cols=98 Identities=15% Similarity=0.050 Sum_probs=52.8
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHhhhcCCChHHHHHHHHh---cCCchhHHHHHHHHHHHHHhhccCCCCHHHHHHH---
Q 002003 34 SIEIACSSIQMHVNPAAAEATILGLCQSPQPYKACQFILE---NSQVANARFQAAAAIRDAAMREWSFLTADEKKSL--- 107 (983)
Q Consensus 34 ~lE~~~~~ly~~~~r~~Ae~~L~~f~~~~~~~~~c~~ILe---~S~~~y~~f~A~~~L~~~v~~~W~~l~~~~r~~l--- 107 (983)
-+|+|+......+|-...-++-...+.+++....+-..|. .+.++.++++|+++|...+.+.- ..-+.++
T Consensus 9 li~kATs~~~~~~Dw~~~l~icD~i~~~~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg----~~f~~ev~~~ 84 (140)
T PF00790_consen 9 LIEKATSESLPSPDWSLILEICDLINSSPDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCG----PRFHREVASK 84 (140)
T ss_dssp HHHHHT-TTSSS--HHHHHHHHHHHHTSTTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSH----HHHHHHHTSH
T ss_pred HHHHHhCcCCCCCCHHHHHHHHHHHHcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCC----HHHHHHHhHH
Confidence 3666666554444544444444445555544444333332 24899999999999999998853 3333333
Q ss_pred --HHHHHHHHHHcCCCChhHHHHHHHHHHH
Q 002003 108 --IGFCLCFVMQHASSPEGYVQAKISSVAA 135 (983)
Q Consensus 108 --r~~ll~yl~~~~~~l~~~V~~~l~~~la 135 (983)
-+-+...+..+.....+.|++++..++.
T Consensus 85 ~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~ 114 (140)
T PF00790_consen 85 EFLDELVKLIKSKKTDPETPVKEKILELLQ 114 (140)
T ss_dssp HHHHHHHHHHHHTTTHHHSHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCCchhHHHHHHHHHHH
Confidence 2333333443331111238888776654
No 28
>PF11277 Med24_N: Mediator complex subunit 24 N-terminal; InterPro: IPR021429 This subunit of the Mediator complex appears to be conserved only from insects to humans. It is essential for correct retinal development in fish. Subunit composition of the mediator contributes to the control of differentiation in the vertebrate CNS as there are divergent functions of the mediator subunits Crsp34/Med27, Trap100/Med24, and Crsp150/Med14 [].
Probab=31.97 E-value=1.3e+03 Score=30.30 Aligned_cols=106 Identities=17% Similarity=0.232 Sum_probs=64.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhchh-hhhhHHHHHHHHHHHHHhcccccccCCCCCcccccccccccccccCCCCccccc
Q 002003 210 YLKTFYCWARDAALSVTKQIIESDA-AASEVKACTAALRLLHQILNWDFQFDTSGRKISINVFSAGVRTETSSSKRSECI 288 (983)
Q Consensus 210 ~L~~if~~~~~~L~~~~~~~~~~~~-~~~~~~l~~~~L~l~~~~LswdF~~~~~d~~~~~~~~~~~~~~~~~~~~s~~~~ 288 (983)
.|..+..|.++......++..+... ......+++.+..+++.+++=+|..... |||+|+.
T Consensus 122 Alls~v~WLL~~~~~~l~~~~e~~~~~~~~e~~l~~~~~~L~~i~~s~f~~aLL----~Iak~ee--------------- 182 (990)
T PF11277_consen 122 ALLSLVHWLLQCYEYSLEKLRENNELSAEQEEILEKCCQRLEKILESTFLRALL----YIAKLEE--------------- 182 (990)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHcCchHHHHH----HHhhhcc---------------
Confidence 3666667777766666554422222 2346789999999999999999887763 4554322
Q ss_pred ccCCCccchHhhcccchHHHHHHHHHHHHhccccCCCCCCccchHHHHHHHHHHHhccCCccC
Q 002003 289 IVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLIVQLCSLTGTVFP 351 (983)
Q Consensus 289 t~~~p~~Wr~~l~~~~~l~llf~ly~~lr~~~~~~~~~~~~~l~~~al~cL~qLaSl~~~~f~ 351 (983)
|.+|. -+=+.+..+.+..+.++. ........+|+-+++++-.+.+.
T Consensus 183 ----~e~w~----------~v~q~~~~l~~~l~~~~~---~~~~~tL~~~l~kl~sl~~~~~~ 228 (990)
T PF11277_consen 183 ----PESWN----------EVEQKCAKLKNSLSNSGF---VKSNVTLRDQLEKLASLEKSIPS 228 (990)
T ss_pred ----HhHHH----------HHHHHHHHHHHHhccccc---ccCchHHHHHHHHHHHHHhcCcc
Confidence 23444 333444555444333221 24455677888888888766654
No 29
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=30.10 E-value=4e+02 Score=25.73 Aligned_cols=60 Identities=10% Similarity=-0.067 Sum_probs=37.4
Q ss_pred CCchhHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHcCC--CChhHHHHHHHHHHHH
Q 002003 75 SQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMQHAS--SPEGYVQAKISSVAAQ 136 (983)
Q Consensus 75 S~~~y~~f~A~~~L~~~v~~~W~~l~~~~r~~lr~~ll~yl~~~~~--~l~~~V~~~l~~~la~ 136 (983)
+.++.++..|+.+|...+.+.-..+- ....=+.|+.+.+--..+ ..+.-|+.++..++..
T Consensus 48 ~~n~~vql~AL~lLd~~vkNcg~~f~--~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~ 109 (133)
T cd03561 48 YGNPHVQLLALTLLELLVKNCGKPFH--LQVADKEFLLELVKIAKNSPKYDPKVREKALELILA 109 (133)
T ss_pred CCCHHHHHHHHHHHHHHHHhCChHHH--HHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999988543222 222225566663222221 3567788887776543
No 30
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.61 E-value=3.7e+02 Score=33.85 Aligned_cols=87 Identities=14% Similarity=0.213 Sum_probs=50.6
Q ss_pred HHHHHHHHhhchhhccCCCcHHHHHHHHHhhHH-HHHHHHHHh-ccchHHHHHHHHHHHHHHhhhccccCccchHHHHHH
Q 002003 823 LVSCLLERLRGAANATEPRTQKAIYEMGFSVMN-PVLLLLEVY-KHESAVVYLLLKFVVDWVDGQISYLEVQETNIVIDF 900 (983)
Q Consensus 823 ~i~~ll~~LrGia~a~~~~~~~~lf~~i~~~l~-~l~~l~~~y-~~~p~Vv~~iLkff~elv~~~~~~l~~~~~~~Lf~~ 900 (983)
-+-++.+.||-++...-+.. +-+...--|++. .+++++.++ .++++.-...=.++++++.|--.-=...|+ .||+.
T Consensus 220 l~~~lV~iLk~l~~~~yspe-ydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnA-ILYE~ 297 (866)
T KOG1062|consen 220 LVPSLVKILKQLTNSGYSPE-YDVHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNA-ILYEC 297 (866)
T ss_pred HHHHHHHHHHHHhcCCCCCc-cCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhH-HHHHH
Confidence 34455555555555444431 233344456666 366777775 677777777667777777654222222232 57888
Q ss_pred HHHHHHHHhcc
Q 002003 901 CTRLLQLYSSH 911 (983)
Q Consensus 901 ~~~li~~Y~~~ 911 (983)
+..+...|.+.
T Consensus 298 V~TI~~I~~~~ 308 (866)
T KOG1062|consen 298 VRTIMDIRSNS 308 (866)
T ss_pred HHHHHhccCCc
Confidence 88888877554
No 31
>PF05536 Neurochondrin: Neurochondrin
Probab=29.31 E-value=1.1e+03 Score=28.71 Aligned_cols=204 Identities=11% Similarity=0.019 Sum_probs=111.4
Q ss_pred hhHHHHHHHHHHHHHhccccchhhhhcchHHHHHHHHhhcccccccccchhhHHHHHHHHHHhhcCCC--chhhhHHHHH
Q 002003 716 KDLQELTCNQLLHALVRRKNVCVHLVALGSWRELASAFANDKTLILLNSTNQRSLAQTLVLSAYGMRN--SESSNQYVRD 793 (983)
Q Consensus 716 ~~vi~~t~~~LL~~L~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~l~~~~~~~l~~aL~~~~~~~~d--~~~~~~~f~~ 793 (983)
..++.+++ +.|..++.+..-.+.+++...+..|++...++ + ...-...+++..+...... -.+..+.+..
T Consensus 113 ~~~v~dal-qcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~~-~------~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~ 184 (543)
T PF05536_consen 113 LETVDDAL-QCLLAIASSPEGAKALLESGAVPALCEIIPNQ-S------FQMEIALNLLLNLLSRLGQKSWAEDSQLLHS 184 (543)
T ss_pred hhHHHHHH-HHHHHHHcCcHhHHHHHhcCCHHHHHHHHHhC-c------chHHHHHHHHHHHHHhcchhhhhhhHHHHHH
Confidence 67889999 99999998888888999999999999887542 2 1233344444444332211 0123344556
Q ss_pred HHHHHHHHHHHHhCCCCcccccCchhHHHHHHHHHHHhhchhhccCCC--cHHHHHHHHHhhHHHHHHHHHHhccchHHH
Q 002003 794 LTRHATAYLVELSGKNDLKNVSQQPDIILLVSCLLERLRGAANATEPR--TQKAIYEMGFSVMNPVLLLLEVYKHESAVV 871 (983)
Q Consensus 794 ~~~pl~~~~~~l~~~~~~~~~~~~~~vk~~i~~ll~~LrGia~a~~~~--~~~~lf~~i~~~l~~l~~l~~~y~~~p~Vv 871 (983)
++..|...|...-+ ..| ..+++.|..+..-++.. ....--.|..++..-+-.++.. +-.|.--
T Consensus 185 il~~La~~fs~~~~-----------~~k---fell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~s-r~~~~~R 249 (543)
T PF05536_consen 185 ILPSLARDFSSFHG-----------EDK---FELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQS-RLTPSQR 249 (543)
T ss_pred HHHHHHHHHHhhcc-----------chH---HHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhc-CCCHHHH
Confidence 66666666643322 222 23344444444444211 1112225655555555555544 3335666
Q ss_pred HHHHHHHHHHHhhhcc---ccCcc-chHHHHHHHHHHHHHHhcccCCcc--ccchhhhhhhhhhHHHHHHHHHhhhc
Q 002003 872 YLLLKFVVDWVDGQIS---YLEVQ-ETNIVIDFCTRLLQLYSSHNIGKV--QFWYIVVSTKSMLVLIIFVMHSNLLF 942 (983)
Q Consensus 872 ~~iLkff~elv~~~~~---~l~~~-~~~~Lf~~~~~li~~Y~~~~~~~~--~~~~~~~~~k~k~i~~~~~iL~~~l~ 942 (983)
.+.|++.+.+++-.-. +-+.+ ++...|--..++.++=-+..+... ......+..+-..+..||.++.+.+.
T Consensus 250 ~~al~Laa~Ll~~~G~~wl~~~~~~~~~~F~~Llv~l~~VEir~~L~~L~~~~~~~~~~~~~~~L~~cf~ilE~~I~ 326 (543)
T PF05536_consen 250 DPALNLAASLLDLLGPEWLFADDKKSGKKFLLLLVNLACVEIRMSLEELLEQLNPEEYPEKQRLLASCFSILEHFIG 326 (543)
T ss_pred HHHHHHHHHHHHHhChHhhcCCCCCCcccHHHHHHHHHHHHHHHHhHHhhhcCCchhhHHHHHHHHHHHHHHHHHHH
Confidence 7778888888876533 22221 233333333333332211111110 01234568888999999999998886
No 32
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=29.13 E-value=2.6e+02 Score=33.49 Aligned_cols=90 Identities=16% Similarity=0.241 Sum_probs=61.7
Q ss_pred CCchhHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhhccCCCCCCchhhHH
Q 002003 75 SQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFF 154 (983)
Q Consensus 75 S~~~y~~f~A~~~L~~~v~~~W~~l~~~~r~~lr~~ll~yl~~~~~~l~~~V~~~l~~~la~I~K~gW~d~~~~~~~~~~ 154 (983)
++|+|++-.|+++|-... +++-...+-..+.+.+. +-.+|||.+.+.+++++.|.. ++.. ... ++
T Consensus 90 ~~n~~~~~lAL~~l~~i~-------~~~~~~~l~~~v~~ll~----~~~~~VRk~A~~~l~~i~~~~-p~~~--~~~-~~ 154 (526)
T PF01602_consen 90 SPNPYIRGLALRTLSNIR-------TPEMAEPLIPDVIKLLS----DPSPYVRKKAALALLKIYRKD-PDLV--EDE-LI 154 (526)
T ss_dssp SSSHHHHHHHHHHHHHH--------SHHHHHHHHHHHHHHHH----SSSHHHHHHHHHHHHHHHHHC-HCCH--HGG-HH
T ss_pred CCCHHHHHHHHhhhhhhc-------ccchhhHHHHHHHHHhc----CCchHHHHHHHHHHHHHhccC-HHHH--HHH-HH
Confidence 678999999999988865 34444555555555543 345699999999999999983 2321 122 78
Q ss_pred HHHHHHhcccCCchhHHHHHHHHHHH
Q 002003 155 SQVHQAVLGIHGVDTQFIGINFLESL 180 (983)
Q Consensus 155 ~~v~~~l~~~~s~~~~~igl~iL~~l 180 (983)
+.+.+++.. .++....-++.++.++
T Consensus 155 ~~l~~lL~d-~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 155 PKLKQLLSD-KDPSVVSAALSLLSEI 179 (526)
T ss_dssp HHHHHHTTH-SSHHHHHHHHHHHHHH
T ss_pred HHHhhhccC-CcchhHHHHHHHHHHH
Confidence 888999863 4455566667777666
No 33
>PF10189 DUF2356: Conserved protein (DUF2356); InterPro: IPR019333 The Integrator complex is involved in small nuclear RNA (snRNA) U1 and U2 transcription, and in their 3'-box-dependent processing. This complex associates with the C-terminal domain of RNA polymerase II largest subunit and is recruited to the U1 and U2 snRNAs genes []. This entry represents subunit 3 of this complex. The function of this subunit is unknown.
Probab=28.81 E-value=1.5e+02 Score=31.57 Aligned_cols=72 Identities=15% Similarity=0.100 Sum_probs=47.9
Q ss_pred chhHHHHHHHHHHHhhchhhccCCCcHHHHHHHHHh------hH---HHHHHHHHHhccchHHHHHHHHHHHHHHhhhcc
Q 002003 817 QPDIILLVSCLLERLRGAANATEPRTQKAIYEMGFS------VM---NPVLLLLEVYKHESAVVYLLLKFVVDWVDGQIS 887 (983)
Q Consensus 817 ~~~vk~~i~~ll~~LrGia~a~~~~~~~~lf~~i~~------~l---~~l~~l~~~y~~~p~Vv~~iLkff~elv~~~~~ 887 (983)
+-.-|-+|+|+|=..+--.-+.+...-.++|||+.= ++ |.++-+...-+++|++++.+|+|++-++.+...
T Consensus 99 ~i~pRwavIgwLl~~c~~~~~~~~~KLaLfyDWLffd~~~dniMnIEPaiLvm~~sl~~~p~it~sLLeFL~~~v~~~~p 178 (230)
T PF10189_consen 99 DIIPRWAVIGWLLTTCKSNVEQQNAKLALFYDWLFFDPRNDNIMNIEPAILVMRHSLKSHPQITNSLLEFLCRIVENFDP 178 (230)
T ss_pred chhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCCCCCceeeecHHHHHHHHHcccChHHHHHHHHHHHHHHHHhCc
Confidence 334566788887655422222222223488899753 33 456666677799999999999999999887654
Q ss_pred c
Q 002003 888 Y 888 (983)
Q Consensus 888 ~ 888 (983)
-
T Consensus 179 ~ 179 (230)
T PF10189_consen 179 P 179 (230)
T ss_pred c
Confidence 3
No 34
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=28.80 E-value=2.5e+02 Score=25.36 Aligned_cols=107 Identities=13% Similarity=-0.026 Sum_probs=57.8
Q ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHHHHhhccCCCCHHHHH-----HHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHH
Q 002003 64 PYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKK-----SLIGFCLCFVMQHASSPEGYVQAKISSVAAQLM 138 (983)
Q Consensus 64 ~~~~c~~ILe~S~~~y~~f~A~~~L~~~v~~~W~~l~~~~r~-----~lr~~ll~yl~~~~~~l~~~V~~~l~~~la~I~ 138 (983)
.++....+|.+. +++++..|+.+|....... ++.+. +.-..+++++.. -.+-|+...+.++..|.
T Consensus 8 ~i~~l~~~l~~~-~~~~~~~a~~~l~~l~~~~-----~~~~~~~~~~~~i~~l~~~l~~----~~~~v~~~a~~~L~~l~ 77 (120)
T cd00020 8 GLPALVSLLSSS-DENVQREAAWALSNLSAGN-----NDNIQAVVEAGGLPALVQLLKS----EDEEVVKAALWALRNLA 77 (120)
T ss_pred ChHHHHHHHHcC-CHHHHHHHHHHHHHHhcCC-----HHHHHHHHHCCChHHHHHHHhC----CCHHHHHHHHHHHHHHc
Confidence 444455566544 4788888888888876551 22233 333345554432 34677788888888887
Q ss_pred hhccCCCCCCchhhHHHHHHHHhcccCCchhHHHHHHHHHHHH
Q 002003 139 KRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLV 181 (983)
Q Consensus 139 K~gW~d~~~~~~~~~~~~v~~~l~~~~s~~~~~igl~iL~~lv 181 (983)
..+......-.+..++..+.+.+.. .+......++.+|..+.
T Consensus 78 ~~~~~~~~~~~~~g~l~~l~~~l~~-~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 78 AGPEDNKLIVLEAGGVPKLVNLLDS-SNEDIQKNATGALSNLA 119 (120)
T ss_pred cCcHHHHHHHHHCCChHHHHHHHhc-CCHHHHHHHHHHHHHhh
Confidence 5443110000011244555566653 34455556666666554
No 35
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=28.28 E-value=1.2e+02 Score=31.47 Aligned_cols=53 Identities=21% Similarity=0.155 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhcc-c-cCccchHHHHHHHHHHHH
Q 002003 853 VMNPVLLLLEVYKHESAVVYLLLKFVVDWVDGQIS-Y-LEVQETNIVIDFCTRLLQ 906 (983)
Q Consensus 853 ~l~~l~~l~~~y~~~p~Vv~~iLkff~elv~~~~~-~-l~~~~~~~Lf~~~~~li~ 906 (983)
++..++.++..+.++.-|+.|+|+++.-+..+... . ...+++ ..++.+..+++
T Consensus 128 v~~~l~~il~~~~~~dRv~vP~l~tl~~Ll~~~~~~~~~~~~~~-~~~~~L~~~~~ 182 (193)
T PF12612_consen 128 VLSDLLSILKENLRNDRVVVPLLKTLDFLLSSGVFDSLPEDSDS-PFLRKLFDLVQ 182 (193)
T ss_pred HHHHHHHHHHHhCCCCCeeecHHHHHHHHHhCcchhcccccccc-hHHHHHHHHHH
Confidence 56778888888999999999999999999998533 2 223333 34444444443
No 36
>PF10487 Nup188: Nucleoporin subcomplex protein binding to Pom34; InterPro: IPR018864 This is one of the many peptides that make up the nucleoporin complex (NPC), and is found across eukaryotes []. The Nup188 subcomplex (Nic96p-Nup188p-Nup192p-Pom152p) is one of at least six that make up the NPC, and as such is symmetrically localised on both faces of the NPC at the nuclear end, being integrally bound to the C terminus of Pom34p [].
Probab=28.25 E-value=1.5e+03 Score=29.77 Aligned_cols=47 Identities=13% Similarity=0.196 Sum_probs=33.4
Q ss_pred HHHHHHHhccchH---HHHHHHHHHHHHHhh--------hccccCccchHHHHHHHHH
Q 002003 857 VLLLLEVYKHESA---VVYLLLKFVVDWVDG--------QISYLEVQETNIVIDFCTR 903 (983)
Q Consensus 857 l~~l~~~y~~~p~---Vv~~iLkff~elv~~--------~~~~l~~~~~~~Lf~~~~~ 903 (983)
...++++|..+|. ...++|+++..++.. ...||+++++..+...+++
T Consensus 832 s~~Lv~~~a~~~~~~~~~~~il~lL~sl~~~~~~~e~PSLL~~LG~~~s~~fl~~ll~ 889 (931)
T PF10487_consen 832 SPDLVDLYASYPSLPRLRVPILELLTSLVSADWSSEPPSLLGHLGSEHSKSFLDSLLS 889 (931)
T ss_pred chHHHHHHhcccchhhHHHHHHHHHHHHhcCccCCCCCcHHHHcCChhHHHHHHHHHH
Confidence 3455666665565 888999999999973 3458888888776665443
No 37
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=28.12 E-value=2.5e+02 Score=24.23 Aligned_cols=84 Identities=17% Similarity=0.110 Sum_probs=49.9
Q ss_pred HHHHHHHhhCCCC---HHHHHHHHHhhhcCCChHHHHHHHHhcCCchhHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHH
Q 002003 35 IEIACSSIQMHVN---PAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFC 111 (983)
Q Consensus 35 lE~~~~~ly~~~~---r~~Ae~~L~~f~~~~~~~~~c~~ILe~S~~~y~~f~A~~~L~~~v~~~W~~l~~~~r~~lr~~l 111 (983)
++.+.+.+...++ |..|=+.|.+++ ++...+.....| ++.++.++..|+.+|... .. .+....|
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~-~~~~~~~L~~~l-~d~~~~vr~~a~~aL~~i--------~~---~~~~~~L 67 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG-DPEAIPALIELL-KDEDPMVRRAAARALGRI--------GD---PEAIPAL 67 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT-HHHHHHHHHHHH-TSSSHHHHHHHHHHHHCC--------HH---HHTHHHH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC-CHhHHHHHHHHH-cCCCHHHHHHHHHHHHHh--------CC---HHHHHHH
Confidence 3556666644544 666666666554 345566666666 578889999999888753 11 2234444
Q ss_pred HHHHHHcCCCChhHHHHHHHHHH
Q 002003 112 LCFVMQHASSPEGYVQAKISSVA 134 (983)
Q Consensus 112 l~yl~~~~~~l~~~V~~~l~~~l 134 (983)
...+.. +-...|+...+..+
T Consensus 68 ~~~l~~---~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 68 IKLLQD---DDDEVVREAAAEAL 87 (88)
T ss_dssp HHHHTC----SSHHHHHHHHHHH
T ss_pred HHHHcC---CCcHHHHHHHHhhc
Confidence 443322 23466666666554
No 38
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=27.09 E-value=1.1e+03 Score=32.28 Aligned_cols=94 Identities=19% Similarity=0.308 Sum_probs=62.2
Q ss_pred CCHHHHHHHHHhhhcCCCh---------HHHHHHHHhcCC--chhHHHHHHHHHHHHHhhccCCCCHHHHH---------
Q 002003 46 VNPAAAEATILGLCQSPQP---------YKACQFILENSQ--VANARFQAAAAIRDAAMREWSFLTADEKK--------- 105 (983)
Q Consensus 46 ~~r~~Ae~~L~~f~~~~~~---------~~~c~~ILe~S~--~~y~~f~A~~~L~~~v~~~W~~l~~~~r~--------- 105 (983)
.++.+--+.|++...+++. ++..-+||---. ...++..|.+.|.+.|..+ +++|.
T Consensus 209 ~D~ee~ar~fLemSss~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSq-----PD~kr~RRE~kvL~ 283 (2195)
T KOG2122|consen 209 DDEEEMARTFLEMSSSPESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQ-----PDEKRGRREKKVLH 283 (2195)
T ss_pred CCHHHHHHHHHHhccCchhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcC-----cchhhhHHHHHHHH
Confidence 3465555566666666543 333334442221 4689999999999998874 33322
Q ss_pred ---HHHHH---HHHHHHHcCCCC-hhHHHHHHHHHHHHHHhhccCC
Q 002003 106 ---SLIGF---CLCFVMQHASSP-EGYVQAKISSVAAQLMKRGWLD 144 (983)
Q Consensus 106 ---~lr~~---ll~yl~~~~~~l-~~~V~~~l~~~la~I~K~gW~d 144 (983)
+||.| +..|+..+++.. +.-+..+|+..++.|+|.++=+
T Consensus 284 lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFDE 329 (2195)
T KOG2122|consen 284 LLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFDE 329 (2195)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhccH
Confidence 56655 456888886544 5678899999999999999844
No 39
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=26.12 E-value=1.7e+02 Score=32.10 Aligned_cols=88 Identities=15% Similarity=0.199 Sum_probs=63.2
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHhhhcc-c--c-CccchHHHHHHHHHHHHHHhcccCCcc-------------c
Q 002003 855 NPVLLLLEVYKHESAVVYLLLKFVVDWVDGQIS-Y--L-EVQETNIVIDFCTRLLQLYSSHNIGKV-------------Q 917 (983)
Q Consensus 855 ~~l~~l~~~y~~~p~Vv~~iLkff~elv~~~~~-~--l-~~~~~~~Lf~~~~~li~~Y~~~~~~~~-------------~ 917 (983)
+.++.++..|.+++.++..++|+++.++.--.. + . ...+....|.+..+.++.|...-+... .
T Consensus 44 ~DLiPiL~~~~~~~~l~~~~l~LLV~LT~P~~~~~~~~~~~~~~~~~~~~l~~~l~~yK~afl~~~~l~~~~~~l~~~l~ 123 (266)
T PF04821_consen 44 KDLIPILISYKDDDKLFLACLRLLVNLTWPIELLVESQPKDKNQRRNIPELLKYLQSYKEAFLDPRVLKALIRLLLPPLE 123 (266)
T ss_pred hhHHHHHHhccCchHHHHHHHHHHHHhCCCHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhHHhh
Confidence 378888888999999999999999999964322 1 1 345666777777788888855432110 0
Q ss_pred c-chhhhhhhhhhHHHHHHHHHhhhc
Q 002003 918 F-WYIVVSTKSMLVLIIFVMHSNLLF 942 (983)
Q Consensus 918 ~-~~~~~~~k~k~i~~~~~iL~~~l~ 942 (983)
. ..+-.++...-|-+++.+++|+|.
T Consensus 124 ~~~~~rt~~d~~ii~lvL~LiRNlL~ 149 (266)
T PF04821_consen 124 KDWEDRTERDNLIIELVLTLIRNLLA 149 (266)
T ss_pred cccccCCHHHHHHHHHHHHHHHHHhc
Confidence 0 122247778899999999999999
No 40
>PTZ00429 beta-adaptin; Provisional
Probab=25.49 E-value=1.3e+03 Score=29.48 Aligned_cols=114 Identities=11% Similarity=0.146 Sum_probs=69.9
Q ss_pred HHHhhhc-CCC-hHHHHHHHHh--cCCchhHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHcCCCChhHHHHH
Q 002003 54 TILGLCQ-SPQ-PYKACQFILE--NSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMQHASSPEGYVQAK 129 (983)
Q Consensus 54 ~L~~f~~-~~~-~~~~c~~ILe--~S~~~y~~f~A~~~L~~~v~~~W~~l~~~~r~~lr~~ll~yl~~~~~~l~~~V~~~ 129 (983)
++..+.+ .|+ ++-.|-.+.. ++.||+++=.|+.+|-..-. .++-.++...+.+.-.+-.+|||.+
T Consensus 91 YL~~ya~~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~Ir~-----------~~i~e~l~~~lkk~L~D~~pYVRKt 159 (746)
T PTZ00429 91 YVLSTARLQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCIRV-----------SSVLEYTLEPLRRAVADPDPYVRKT 159 (746)
T ss_pred HHHHHcccChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCc-----------HHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 3444443 343 2333444432 24577777777776655221 2466677777777766778999999
Q ss_pred HHHHHHHHHhhccCCCCCCchhhHHHHHHHHhcccCCchhHHHHHHHHHHHHh
Q 002003 130 ISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVS 182 (983)
Q Consensus 130 l~~~la~I~K~gW~d~~~~~~~~~~~~v~~~l~~~~s~~~~~igl~iL~~lv~ 182 (983)
.+.++++|.+..= +. -+...+++++.+++.. .++....-++..|.++.+
T Consensus 160 Aalai~Kly~~~p-el--v~~~~~~~~L~~LL~D-~dp~Vv~nAl~aL~eI~~ 208 (746)
T PTZ00429 160 AAMGLGKLFHDDM-QL--FYQQDFKKDLVELLND-NNPVVASNAAAIVCEVND 208 (746)
T ss_pred HHHHHHHHHhhCc-cc--ccccchHHHHHHHhcC-CCccHHHHHHHHHHHHHH
Confidence 9999999976431 11 0122477888888763 455556666777777643
No 41
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=23.57 E-value=2.6e+02 Score=31.81 Aligned_cols=128 Identities=9% Similarity=0.086 Sum_probs=71.2
Q ss_pred CCchhHHHHHHHHHHHHHhccccchhhhhcchHHHHHHHHhhcccccccccchhhHHHHHHHHHHhhcCCCchhhhHH--
Q 002003 713 PGEKDLQELTCNQLLHALVRRKNVCVHLVALGSWRELASAFANDKTLILLNSTNQRSLAQTLVLSAYGMRNSESSNQY-- 790 (983)
Q Consensus 713 ~~e~~vi~~t~~~LL~~L~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~l~~~~~~~l~~aL~~~~~~~~d~~~~~~~-- 790 (983)
-+.+++...+. ..|.+..+-...++.++.+|.||.++...... +| .+....-.+|-..|++ +..--.+|
T Consensus 134 y~~~dial~~g-~mlRec~k~e~l~~~iL~~~~f~~ff~~~~~~-~F-diasdaf~t~~~llt~------hk~~~a~fl~ 204 (335)
T PF08569_consen 134 YENPDIALNCG-DMLRECIKHESLAKIILYSECFWKFFKYVQLP-NF-DIASDAFSTFKELLTR------HKKLVAEFLS 204 (335)
T ss_dssp GGSTTTHHHHH-HHHHHHTTSHHHHHHHHTSGGGGGHHHHTTSS-SH-HHHHHHHHHHHHHHHS------SHHHHHHHHH
T ss_pred hcCccccchHH-HHHHHHHhhHHHHHHHhCcHHHHHHHHHhcCC-cc-HhHHHHHHHHHHHHhc------cHHHHHHHHH
Confidence 34677766666 89999999888999999999999999775321 23 2233333444444432 22112222
Q ss_pred --HHHHHHHHHHHHHHHhCCCCcccccCchhHHHHHHHHHHHhhchhhccCCCcHHHHHHHHHhhHHHHHHHHHHhccch
Q 002003 791 --VRDLTRHATAYLVELSGKNDLKNVSQQPDIILLVSCLLERLRGAANATEPRTQKAIYEMGFSVMNPVLLLLEVYKHES 868 (983)
Q Consensus 791 --f~~~~~pl~~~~~~l~~~~~~~~~~~~~~vk~~i~~ll~~LrGia~a~~~~~~~~lf~~i~~~l~~l~~l~~~y~~~p 868 (983)
+..|. ..+..|.+++|+. +|.+-+.+|.++ +.. +....+|..|.++|
T Consensus 205 ~n~d~ff----~~~~~Ll~s~NYv-------tkrqslkLL~el------------------lld--r~n~~vm~~yi~~~ 253 (335)
T PF08569_consen 205 NNYDRFF----QKYNKLLESSNYV-------TKRQSLKLLGEL------------------LLD--RSNFNVMTRYISSP 253 (335)
T ss_dssp HTHHHHH----HHHHHHCT-SSHH-------HHHHHHHHHHHH------------------HHS--GGGHHHHHHHTT-H
T ss_pred HHHHHHH----HHHHHHccCCCeE-------eehhhHHHHHHH------------------HHc--hhHHHHHHHHHCCH
Confidence 33443 3666777777763 555555555544 111 12234455566666
Q ss_pred HHHHHHHHHHHH
Q 002003 869 AVVYLLLKFVVD 880 (983)
Q Consensus 869 ~Vv~~iLkff~e 880 (983)
+=...++.++.+
T Consensus 254 ~nLkl~M~lL~d 265 (335)
T PF08569_consen 254 ENLKLMMNLLRD 265 (335)
T ss_dssp HHHHHHHHHTT-
T ss_pred HHHHHHHHHhcC
Confidence 665555555443
No 42
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=23.34 E-value=1.2e+03 Score=27.00 Aligned_cols=106 Identities=13% Similarity=0.052 Sum_probs=60.1
Q ss_pred hhhhhcchHHHHHHHHhhcccccccccchhhHHHHHHHHHHhhcCCCchh-hhH-------HHHHHHHHHHHHHHHHhCC
Q 002003 737 CVHLVALGSWRELASAFANDKTLILLNSTNQRSLAQTLVLSAYGMRNSES-SNQ-------YVRDLTRHATAYLVELSGK 808 (983)
Q Consensus 737 ~~~l~~~~~~~~L~~~~~~~~~~~~l~~~~~~~l~~aL~~~~~~~~d~~~-~~~-------~f~~~~~pl~~~~~~l~~~ 808 (983)
.++++++|.|+.|+..-. .++..-|.+.-..|++|+++-........+ +.+ ||.+|.+-+-..+ .
T Consensus 7 tr~V~~L~Ev~~l~~~a~--~~~~~~~~~~l~~Ff~avG~~~~~lq~~s~~k~~m~~k~~~Y~g~~~k~i~p~l----~- 79 (373)
T PF14911_consen 7 TRLVFKLPEVKSLFSKAQ--LDSREDPKEPLCQFFKAVGKRYQQLQTLSEGKSQMVTKLLEYFGDFEKWIKPYL----K- 79 (373)
T ss_pred HHHHhCcHHHHHHHHhcc--cccccCcccHHHHHHHHHHHHhhHhHhhHHHHHHHHHHHHHHHHHHHHHcCCcc----c-
Confidence 357889999999997743 222222333447788999887554433333 222 4555444332222 0
Q ss_pred CCcccccCchhHHHHHHHHHHHhhchhhccCCCcHHHHHHHHHh
Q 002003 809 NDLKNVSQQPDIILLVSCLLERLRGAANATEPRTQKAIYEMGFS 852 (983)
Q Consensus 809 ~~~~~~~~~~~vk~~i~~ll~~LrGia~a~~~~~~~~lf~~i~~ 852 (983)
+.....-.-...++|.+=.-+|-+.++.++.+.++|-.+.-
T Consensus 80 ---~~~se~l~~~Y~~lg~lvk~c~~llytksk~~cll~~~vd~ 120 (373)
T PF14911_consen 80 ---SKSSEGLQRIYRVLGILVKHCSPLLYTKSKSQCLLFRIVDC 120 (373)
T ss_pred ---cCCHHHHHHHHHHHHHHHHhcchhheecCccccHHHHHHHH
Confidence 00111122345566777777888888888877777754444
No 43
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=21.83 E-value=1.7e+03 Score=28.21 Aligned_cols=60 Identities=15% Similarity=0.269 Sum_probs=44.4
Q ss_pred hhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhcc------------c----cCcc--chHHHHHHHHHHHHHHhcc
Q 002003 852 SVMNPVLLLLEVYKHESAVVYLLLKFVVDWVDGQIS------------Y----LEVQ--ETNIVIDFCTRLLQLYSSH 911 (983)
Q Consensus 852 ~~l~~l~~l~~~y~~~p~Vv~~iLkff~elv~~~~~------------~----l~~~--~~~~Lf~~~~~li~~Y~~~ 911 (983)
+.++.++.++..+..|.|+|..|+-.|..++.+... | +..+ .-..++..|+.+|..|...
T Consensus 576 gli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~~ 653 (708)
T PF05804_consen 576 GLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDEE 653 (708)
T ss_pred ChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCHH
Confidence 467888999999999999999999999999865422 1 1122 3345777788888888654
No 44
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.96 E-value=1.5e+03 Score=28.81 Aligned_cols=188 Identities=14% Similarity=0.111 Sum_probs=101.0
Q ss_pred HHHHHHHHHhhCCC---CHHHHHHHHHhhhcC------CChHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhccCCCC-H
Q 002003 33 HSIEIACSSIQMHV---NPAAAEATILGLCQS------PQPYKACQFILENS-QVANARFQAAAAIRDAAMREWSFLT-A 101 (983)
Q Consensus 33 ~~lE~~~~~ly~~~---~r~~Ae~~L~~f~~~------~~~~~~c~~ILe~S-~~~y~~f~A~~~L~~~v~~~W~~l~-~ 101 (983)
..+|.+|...+... ||+.|-.-|..|.+. .+.....-..|++- .++-..=+|+-++-..+++.=.-.- .
T Consensus 22 ETI~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~d 101 (970)
T KOG0946|consen 22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMD 101 (970)
T ss_pred hHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcc
Confidence 66999999999774 699998888877632 23333444556553 4556677777777777766520000 0
Q ss_pred H--HHH--------------HHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhhccCCCCCCchhhH------HHHHHH
Q 002003 102 D--EKK--------------SLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAF------FSQVHQ 159 (983)
Q Consensus 102 ~--~r~--------------~lr~~ll~yl~~~~~~l~~~V~~~l~~~la~I~K~gW~d~~~~~~~~~------~~~v~~ 159 (983)
+ +-. +..+-|++|+-.. .=+||--.++++-.+++.-=.+. +..+ +..++.
T Consensus 102 ds~qsdd~g~~iae~fik~qd~I~lll~~~e~~----DF~VR~~aIqLlsalls~r~~e~----q~~ll~~P~gIS~lmd 173 (970)
T KOG0946|consen 102 DSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEF----DFHVRLYAIQLLSALLSCRPTEL----QDALLVSPMGISKLMD 173 (970)
T ss_pred cchhhhHHHHHHHHHHHcCchhHHHHHHHHHhh----chhhhhHHHHHHHHHHhcCCHHH----HHHHHHCchhHHHHHH
Confidence 0 111 2223344443322 34577777888877765432221 2111 223344
Q ss_pred HhcccCCc-hhHHHHHHHHHHHHhhhCCCCCCCCCCChHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhchhhhhh
Q 002003 160 AVLGIHGV-DTQFIGINFLESLVSEFSPSTSSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASE 238 (983)
Q Consensus 160 ~l~~~~s~-~~~~igl~iL~~lv~Efs~~~ss~~gl~~~~Hrk~~~sf~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~ 238 (983)
.+. ++- .-+--++-+|.++|-+=+ |-+--..||+ .+.+.|.+ +++ .+..+.
T Consensus 174 lL~--DsrE~IRNe~iLlL~eL~k~n~-------------~IQKlVAFEN-aFerLfsI----Iee--------EGg~dG 225 (970)
T KOG0946|consen 174 LLR--DSREPIRNEAILLLSELVKDNS-------------SIQKLVAFEN-AFERLFSI----IEE--------EGGLDG 225 (970)
T ss_pred HHh--hhhhhhchhHHHHHHHHHccCc-------------hHHHHHHHHH-HHHHHHHH----HHh--------cCCCCC
Confidence 444 222 222256677777774322 2344567753 35555553 321 111123
Q ss_pred HHHHHHHHHHHHHhcccc
Q 002003 239 VKACTAALRLLHQILNWD 256 (983)
Q Consensus 239 ~~l~~~~L~l~~~~Lswd 256 (983)
.-++..+|.++.++|-.+
T Consensus 226 gIVveDCL~ll~NLLK~N 243 (970)
T KOG0946|consen 226 GIVVEDCLILLNNLLKNN 243 (970)
T ss_pred cchHHHHHHHHHHHHhhC
Confidence 357788888888888766
No 45
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.66 E-value=1e+03 Score=29.61 Aligned_cols=204 Identities=16% Similarity=0.111 Sum_probs=109.9
Q ss_pred HHhhhcCCCChhhHHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHhccccchhhhhcch-HHHHHHHHhhcccccccc
Q 002003 684 LLSFFGEHNQGKPVLDIIVRISMTTLVSYPGEKDLQELTCNQLLHALVRRKNVCVHLVALG-SWRELASAFANDKTLILL 762 (983)
Q Consensus 684 L~~~fg~~~~~~~vl~~lv~ki~~nL~~w~~e~~vi~~t~~~LL~~L~~~~~~~~~l~~~~-~~~~L~~~~~~~~~~~~l 762 (983)
|+.+||. .++..++.-+-..|.+ ++=+++++..--|.+.+.|.+.. ..=.+| -+.++++......|+
T Consensus 382 Lanvf~~-----elL~~l~PlLk~~L~~---~~W~vrEagvLAlGAIAEGcM~g-~~p~LpeLip~l~~~L~DKkpl--- 449 (885)
T KOG2023|consen 382 LANVFGD-----ELLPILLPLLKEHLSS---EEWKVREAGVLALGAIAEGCMQG-FVPHLPELIPFLLSLLDDKKPL--- 449 (885)
T ss_pred HHHhhHH-----HHHHHHHHHHHHHcCc---chhhhhhhhHHHHHHHHHHHhhh-cccchHHHHHHHHHHhccCccc---
Confidence 4555543 3566666666665543 44455655435678888885421 111122 355566554433332
Q ss_pred cchhhHHHHHHHHHHhhcCCCchhhhHHHHHHHHHHHHHHHHHhC------CCCcccccCchhHHHHHHHHH-HHhhchh
Q 002003 763 NSTNQRSLAQTLVLSAYGMRNSESSNQYVRDLTRHATAYLVELSG------KNDLKNVSQQPDIILLVSCLL-ERLRGAA 835 (983)
Q Consensus 763 ~~~~~~~l~~aL~~~~~~~~d~~~~~~~f~~~~~pl~~~~~~l~~------~~~~~~~~~~~~vk~~i~~ll-~~LrGia 835 (983)
+|+-=.-+|.|-+..... +.+++||..+|+++-.++..=.. -..|+ + -.+++-.+++--| ..|.-++
T Consensus 450 ---VRsITCWTLsRys~wv~~-~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfA-t-leE~A~~eLVp~l~~IL~~l~ 523 (885)
T KOG2023|consen 450 ---VRSITCWTLSRYSKWVVQ-DSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFA-T-LEEEAGEELVPYLEYILDQLV 523 (885)
T ss_pred ---eeeeeeeeHhhhhhhHhc-CChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHH-H-HHHhccchhHHHHHHHHHHHH
Confidence 333333455555443333 23678999999999887532100 01111 0 1122222222222 3456667
Q ss_pred hccCC---CcHHHHHHHHHh-------------hHHH-HHHHHHHh---ccchHHHHHHHHHHHHHHhhhcc-ccCccch
Q 002003 836 NATEP---RTQKAIYEMGFS-------------VMNP-VLLLLEVY---KHESAVVYLLLKFVVDWVDGQIS-YLEVQET 894 (983)
Q Consensus 836 ~a~~~---~~~~~lf~~i~~-------------~l~~-l~~l~~~y---~~~p~Vv~~iLkff~elv~~~~~-~l~~~~~ 894 (983)
.|..- ||--+|||.|.. ++.. ++-|++.| .|+.-=.-|+|+.+..++...-. | -|-+
T Consensus 524 ~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~DKdLfPLLEClSsia~AL~~gF--~P~~ 601 (885)
T KOG2023|consen 524 FAFGKYQKKNLLILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSDSDKDLFPLLECLSSIASALGVGF--LPYA 601 (885)
T ss_pred HHHHHHhhcceehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCcccchHHHHHHHHHHHHHHHhccc--cccC
Confidence 77644 444588877655 2322 23456665 34444456999999998876633 3 3456
Q ss_pred HHHHHHHHHHHHH
Q 002003 895 NIVIDFCTRLLQL 907 (983)
Q Consensus 895 ~~Lf~~~~~li~~ 907 (983)
.-+|+.|.+++|.
T Consensus 602 ~~Vy~Rc~~il~~ 614 (885)
T KOG2023|consen 602 QPVYQRCFRILQK 614 (885)
T ss_pred HHHHHHHHHHHHH
Confidence 6789999999883
No 46
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=20.38 E-value=7e+02 Score=24.10 Aligned_cols=22 Identities=5% Similarity=-0.044 Sum_probs=19.5
Q ss_pred CCchhHHHHHHHHHHHHHhhcc
Q 002003 75 SQVANARFQAAAAIRDAAMREW 96 (983)
Q Consensus 75 S~~~y~~f~A~~~L~~~v~~~W 96 (983)
+.++.++.+|+.+|+..+.+.-
T Consensus 48 ~~n~~v~l~AL~lLe~~vkNcg 69 (133)
T smart00288 48 NKNPHVALLALTLLDACVKNCG 69 (133)
T ss_pred CCCHHHHHHHHHHHHHHHHHCC
Confidence 6889999999999999998863
Done!