Query 002003
Match_columns 983
No_of_seqs 213 out of 404
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 08:16:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002003.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002003hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hat_C Exportin-1; heat repeat 100.0 2.7E-31 9.4E-36 337.3 61.7 639 21-841 11-681 (1023)
2 2x19_B Importin-13; nuclear tr 100.0 1.1E-31 3.6E-36 343.8 56.0 673 20-884 15-715 (963)
3 3gjx_A Exportin-1; transport, 100.0 1.4E-31 4.6E-36 338.4 54.5 638 33-841 28-707 (1073)
4 3a6p_A Exportin-5; exportin-5, 100.0 6.4E-26 2.2E-30 294.8 57.2 694 23-875 1-796 (1204)
5 3ibv_A Exportin-T; karyopherin 100.0 7.7E-25 2.6E-29 278.0 64.7 687 21-885 1-732 (980)
6 3m1i_C Exportin-1; heat repeat 100.0 2.6E-25 9E-30 286.9 60.1 638 33-841 16-681 (1049)
7 2x1g_F Cadmus; transport prote 100.0 2.8E-25 9.5E-30 284.7 54.1 687 33-885 7-724 (971)
8 4fdd_A Transportin-1; heat rep 99.7 1.1E-12 3.7E-17 165.6 47.0 151 23-186 7-161 (852)
9 1wa5_C Importin alpha RE-expor 99.6 7.9E-10 2.7E-14 141.3 61.1 143 33-185 5-155 (960)
10 2bpt_A Importin beta-1 subunit 99.4 1.9E-08 6.5E-13 126.3 52.6 189 34-255 5-211 (861)
11 1qgr_A Protein (importin beta 99.0 1.3E-05 4.4E-10 100.6 52.9 185 35-255 3-204 (876)
12 1ibr_B P95, importin beta-1 su 98.9 1.3E-07 4.6E-12 109.3 26.5 186 34-255 2-204 (462)
13 1u6g_C TIP120 protein, CAND1; 79.5 16 0.00055 47.2 15.5 145 33-186 6-167 (1230)
14 1x5b_A Signal transducing adap 66.5 78 0.0027 30.6 13.1 121 33-162 18-144 (163)
15 4hxt_A De novo protein OR329; 65.1 71 0.0024 31.8 13.5 136 35-182 4-157 (252)
16 2zu6_B Programmed cell death p 64.3 51 0.0017 35.5 12.4 125 11-145 150-279 (307)
17 3eiq_C Programmed cell death p 55.1 81 0.0028 34.7 12.1 108 32-144 217-329 (358)
18 1juq_A ADP-ribosylation factor 47.2 1.1E+02 0.0039 29.7 10.6 64 33-96 16-82 (171)
19 3ldz_A STAM-1, signal transduc 45.4 1.8E+02 0.0061 27.1 11.3 97 33-135 8-110 (140)
20 3g2s_A C-terminal fragment of 45.2 2.1E+02 0.007 27.1 12.3 99 33-135 14-122 (149)
21 1wiz_A DNA-binding protein SAT 44.4 21 0.0007 31.8 4.1 81 10-109 1-92 (101)
22 1elk_A Target of MYB1; superhe 44.2 1.1E+02 0.0036 29.4 9.7 98 33-134 19-125 (157)
23 4hxt_A De novo protein OR329; 37.0 3.1E+02 0.011 26.9 14.6 146 713-885 97-243 (252)
24 2nsz_A Programmed cell death p 34.7 2.3E+02 0.0077 26.0 10.0 109 32-145 7-120 (129)
25 1mhq_A ADP-ribosylation factor 34.4 3E+02 0.01 25.9 11.4 97 34-134 5-111 (148)
26 4ffb_C Protein STU2; tubulin f 33.4 4.1E+02 0.014 27.2 17.5 107 74-187 65-173 (278)
27 3ul1_B Importin subunit alpha- 32.5 2.8E+02 0.0096 31.5 12.7 100 35-139 59-172 (510)
28 3tpo_A Importin subunit alpha- 32.4 3.6E+02 0.012 30.7 13.7 168 714-908 305-495 (529)
29 2ion_A PDCD4, programmed cell 30.7 2.7E+02 0.0091 26.4 10.0 109 32-145 9-122 (152)
30 1xqr_A HSPBP1 protein; armadil 30.5 5E+02 0.017 27.3 16.4 144 713-884 93-239 (296)
31 4g4s_P Proteasome assembly cha 30.1 38 0.0013 35.7 4.2 27 287-313 242-268 (269)
32 4fdd_B RNA-binding protein FUS 29.5 22 0.00075 23.6 1.3 15 11-25 2-16 (29)
33 3ibv_A Exportin-T; karyopherin 29.4 7.9E+02 0.027 30.6 16.9 103 696-810 695-797 (980)
34 2x19_B Importin-13; nuclear tr 29.3 3.4E+02 0.012 33.4 13.7 169 696-885 679-848 (963)
35 2x1g_F Cadmus; transport prote 28.8 3.3E+02 0.011 33.6 13.5 167 696-884 687-859 (971)
36 2jdq_A Importin alpha-1 subuni 27.1 2.7E+02 0.0092 30.4 11.1 139 35-183 22-180 (450)
37 4db6_A Armadillo repeat protei 26.6 4.2E+02 0.014 25.2 11.7 152 9-182 2-167 (210)
38 1ug3_A EIF4GI, eukaryotic prot 25.2 5E+02 0.017 27.8 12.4 108 32-144 11-122 (339)
39 1wa5_B Importin alpha subunit; 24.9 7.7E+02 0.026 27.6 15.5 153 703-884 302-458 (530)
40 4db8_A Armadillo-repeat protei 23.6 4.7E+02 0.016 25.7 11.4 152 702-882 98-250 (252)
41 3rru_A TOM1L1 protein; structu 22.1 3.2E+02 0.011 25.8 8.8 100 33-136 19-127 (152)
42 4fdd_A Transportin-1; heat rep 21.8 1.1E+03 0.037 28.3 32.6 131 48-185 338-474 (852)
43 4b8j_A Importin subunit alpha- 20.3 4.8E+02 0.016 29.3 11.7 141 33-183 74-233 (528)
No 1
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=100.00 E-value=2.7e-31 Score=337.34 Aligned_cols=639 Identities=11% Similarity=0.155 Sum_probs=427.0
Q ss_pred CCCChhhHHHHHHHHHHHHHHhhCCCC--HHHHHHHHHhhhcCCChHHHHHHHHhcCCchhHHHHHHHHHHHHHhhccCC
Q 002003 21 GPADLAKLQSIMHSIEIACSSIQMHVN--PAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSF 98 (983)
Q Consensus 21 ~~md~~~l~~~~~~lE~~~~~ly~~~~--r~~Ae~~L~~f~~~~~~~~~c~~ILe~S~~~y~~f~A~~~L~~~v~~~W~~ 98 (983)
++|| + ++||++++.+|.|.+ |++|+++|.+|+++|++|..|..||+++++++++|+|+++|++.|.++|..
T Consensus 11 ~~~d---v----~~Le~av~~ly~p~~~~r~~A~~~L~~~q~sp~aw~~~~~iL~~s~~~~vR~faa~~Lk~~I~~~W~~ 83 (1023)
T 4hat_C 11 NDLD---I----ALLDQVVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQILQFSTNPQSKFIALSILDKLITRKWKL 83 (1023)
T ss_dssp SCCC---H----HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCTTGGGGHHHHHHHCCCHHHHHHHHHHHHHHHHHHGGG
T ss_pred CCCC---H----HHHHHHHHHHhCCChHHHHHHHHHHHHHHcCccHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhc
Confidence 5677 3 668999999999864 899999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCC-----hhHHHHHHHHHHHHHHhhccCCCCCCchhhHHHHHHHHhcccCCchhHHHH
Q 002003 99 LTADEKKSLIGFCLCFVMQHASSP-----EGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIG 173 (983)
Q Consensus 99 l~~~~r~~lr~~ll~yl~~~~~~l-----~~~V~~~l~~~la~I~K~gW~d~~~~~~~~~~~~v~~~l~~~~s~~~~~ig 173 (983)
+++++|..||+++++++.+..++. +++|++|++++++.|+|++|++. |++++.++.+.++ .++.++..+
T Consensus 84 L~~e~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~----Wp~~l~dL~~~l~--~~~~~~~~~ 157 (1023)
T 4hat_C 84 LPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQN----WPEFIPELIGSSS--SSVNVCENN 157 (1023)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTT----CTTHHHHHHHHTT--TCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChhh----chHHHHHHHHHhc--CCHHHHHHH
Confidence 999999999999999998864222 58999999999999999999974 9999999999997 467889999
Q ss_pred HHHHHHHHhhhCCCCCCCCCCChHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHhc
Q 002003 174 INFLESLVSEFSPSTSSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQIL 253 (983)
Q Consensus 174 l~iL~~lv~Efs~~~ss~~gl~~~~Hrk~~~sf~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~L 253 (983)
+.+|..|.+|....... .++-.++++.+..++.. ++.||.++.++|... ....++..+|+++..++
T Consensus 158 L~iL~~L~EEV~~~~~~--~l~~~r~~~lk~~l~~~-~~~I~~ll~~iL~~~-----------~~~~l~~~~L~~l~s~l 223 (1023)
T 4hat_C 158 MIVLKLLSEEVFDFSAE--QMTQAKALHLKNSMSKE-FEQIFKLCFQVLEQG-----------ASSSLIVATLESLLRYL 223 (1023)
T ss_dssp HHHHHHHHHHHHTSCTT--TSCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHC-----------SSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhhc--cchHHHHHHHHHHHHHH-HHHHHHHHHHHHhCC-----------CCHHHHHHHHHHHHHHH
Confidence 99999999996442211 34567888889999765 899999988888641 13467899999999999
Q ss_pred ccccccCCCCCcccccccccccccccCCCCcccccccCCCccchHhhcccchHHHHH-HHHHHHHhccccCCCCCCccch
Q 002003 254 NWDFQFDTSGRKISINVFSAGVRTETSSSKRSECIIVQPGPAWCDALISSGHIVWLL-NLYSALRQKFSSEGYWLDCPIA 332 (983)
Q Consensus 254 swdF~~~~~d~~~~~~~~~~~~~~~~~~~~s~~~~t~~~p~~Wr~~l~~~~~l~llf-~ly~~lr~~~~~~~~~~~~~l~ 332 (983)
+|...+. +.++++++++| .+.. ++.+.
T Consensus 224 ~WI~i~~---------------------------------------i~~~~ll~~l~~~~L~-------------~~~~r 251 (1023)
T 4hat_C 224 HWIPYRY---------------------------------------IYETNILELLSTKFMT-------------SPDTR 251 (1023)
T ss_dssp TTSCTHH---------------------------------------HHSSSHHHHHHTHHHH-------------SHHHH
T ss_pred HhCCHHH---------------------------------------hcchhHHHHHHHHHcC-------------CHHHH
Confidence 9976653 45667889888 4421 26799
Q ss_pred HHHHHHHHHHHhccCCccCCCChhhHHHHHHHHHHhh-----hhhcCChhhhHHHhhhCC-Chhh-HHHHHHHHHHHHhh
Q 002003 333 VSARKLIVQLCSLTGTVFPSDNGKMQEHHLLQLLSGI-----LEWVDPPDVVAQAIESGK-SESE-MLDGCRALLSIATV 405 (983)
Q Consensus 333 ~~al~cL~qLaSl~~~~f~~~~~~~r~~yl~~~l~~~-----~~il~~~~~~~~~~~~gl-~~~~-~~e~cr~L~rL~~~ 405 (983)
..|.+||.++.+.+.+ +++. ...+.+..++..+ ..++++......+...|- .+.+ +..+||++..+...
T Consensus 252 ~~A~ecL~eIv~~~~~--~~~~--~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~ 327 (1023)
T 4hat_C 252 AITLKCLTEVSNLKIP--QDND--LIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLAR 327 (1023)
T ss_dssp HHHHHHHHHHHTSCCC--SSCH--HHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccccC--CchH--HHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHH
Confidence 9999999999986531 1111 1223555454444 334443333344444443 2334 44689998888777
Q ss_pred cChhhHHHhhhccCchhhHHHHHHHHHHHHHHHhhcccccCcccHHHHHHHHHHHHHhhhcccccCCCCCCChhhhhhHH
Q 002003 406 TTPFVFDRLLKSIRPFGTLTLLSNLMCEVVKVLMMNNTEEGTWSWEARDILLDTWTTLLVSLDSTGRNVVLPLEVRNAAA 485 (983)
Q Consensus 406 ~~~~~l~~l~~s~~~~~~l~~L~~Lt~~~i~~~~~~~~~~~~~~~es~~~LL~~W~~lv~~~~~~~~~~~~p~~l~~~~~ 485 (983)
|. ..+. .. ..+.+.+..+...++....+ + -.+.+..++++|..+.+++-. +.........+..
T Consensus 328 ~~-~li~----~~--~~~~~~l~~~l~~Ll~~~~~----~---d~ei~~~tl~FW~~L~~~l~~---e~~~~~~~~~~~~ 390 (1023)
T 4hat_C 328 NR-ALLE----SD--ESLRELLLNAHQYLIQLSKI----E---ERELFKTTLDYWHNLVADLFY---EPLKKHIYEEICS 390 (1023)
T ss_dssp HG-GGGT----SC--GGGHHHHHHHHHHHHHHTTS----S---CHHHHHHHHHHHHHHHHHHTT---STTTGGGGHHHHH
T ss_pred HH-HHHh----CC--cchhHHHHHHHHHHHHhhCC----C---cHHHHHHHHHHHHHHHHHHHh---chHHHHHHHHHHH
Confidence 74 1121 11 11111111111112221111 1 258899999999999986421 1001111223345
Q ss_pred HHHHHHHHhhhccccccc--cCC-Ccc-cch--hhccHHHHHHHHHHHHHHHHHcHhhhHHHHHHHHHHHHHHHhcccCC
Q 002003 486 SLFALIVESELKVASASA--MDD-NGE-FNY--LQASISAMDERLSSYALIARAAIDATVPLLTRLFSERFARLHQGRGM 559 (983)
Q Consensus 486 ~I~~~yi~srL~~~~~~~--~~d-~d~-de~--~e~d~~~~~eqL~~ia~l~R~~~~~t~~lL~~l~~~~~~~l~~~~~~ 559 (983)
++.... -.|+..|+... .+| .+. +|. +.|+.+.|.+-=+.+..++.+.+..+.+.+.+.+.+.+. ++
T Consensus 391 ~L~~vl-i~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~l~~l~~~~~~~~~~~~l~~~l~------~~ 463 (1023)
T 4hat_C 391 QLRLVI-IENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQID------GS 463 (1023)
T ss_dssp HHHHHH-HHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHS------ST
T ss_pred HHHHHH-HHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhc------CC
Confidence 666663 46777776321 111 111 010 113334554333777888888888888888877755432 11
Q ss_pred CCcchhhHHHHHHHHHHHhHhccCCCCCccccchhhhhhhhhhhhhccChHHHHHHHHHHHHHHhcCccCcccCCCHHHH
Q 002003 560 IDPTETLEELYSLLLITGHVLADEGEGEIPVVPNAIQTHFVDTIEAAKHPVVLLCGSIIKFAEWSLDPEARASVFSPRLM 639 (983)
Q Consensus 560 ~~~~~~~E~L~WLv~i~G~~Lad~~~gE~~~iP~~i~~~~~~~~~~~~d~v~~L~~~vl~l~~~~l~~~~~~~~~Sp~L~ 639 (983)
++ -+..+-=.++..|++..+..+ +.....+..++.-+++++... .+.. -.+.+.
T Consensus 464 -~~--~W~~~EA~~~a~gaIa~~~~~------------------~~e~~~l~~vi~~Ll~l~~~~--~~~d---~k~~v~ 517 (1023)
T 4hat_C 464 -EW--SWHNINTLSWAIGSISGTMSE------------------DTEKRFVVTVIKDLLDLCVKK--RGKD---NKAVVA 517 (1023)
T ss_dssp -TC--CHHHHHHHHHHHHHTTTSSCH------------------HHHHHHHHHHHHHHHHHHHHC--CSHH---HHHHHH
T ss_pred -CC--CHHHHHHHHHHHHHHHcCCCc------------------hhHHHHHHHHHHHHHHhhhcc--ccCc---chHHHH
Confidence 11 133344456667775432210 001122345555566665532 1110 135677
Q ss_pred HHHHHHHHHHHHhhcCCccccccCCCCcCCCCCccccccchhhHHHhhhcCCCChhhHHHHHHHHHHHhccCCCCchhHH
Q 002003 640 EAIVWFLARWSQTYLMPLEEFRDSSTNLCHDTGYQHQSSTSRKALLSFFGEHNQGKPVLDIIVRISMTTLVSYPGEKDLQ 719 (983)
Q Consensus 640 ~a~lwFl~~~~~~Yl~~~~~~~~~~~~~~~~~~y~~~s~~~~~~L~~~fg~~~~~~~vl~~lv~ki~~nL~~w~~e~~vi 719 (983)
.+.+|.++|+.. ++.. +...|.-++++++.-+. ...++|.
T Consensus 518 ~t~~~~lGry~~-------------------------------wl~~-------~~~~L~~vl~~L~~~l~--~~~~~v~ 557 (1023)
T 4hat_C 518 SDIMYVVGQYPR-------------------------------FLKA-------HWNFLRTVILKLFEFMH--ETHEGVQ 557 (1023)
T ss_dssp HHHHHHHHTCHH-------------------------------HHHH-------CHHHHHHHHHHHHHHTT--CSCHHHH
T ss_pred HHHHHHHHHHHH-------------------------------HHhc-------cHHHHHHHHHHHHHHhh--cCCHHHH
Confidence 789999988542 2221 11234445555555441 1246799
Q ss_pred HHHHHHHHHHHhccccchh-hhhc------chHHHHHHHHhhcccccccccchhhHHHHHHHHHHhhcCCCchhhhHHHH
Q 002003 720 ELTCNQLLHALVRRKNVCV-HLVA------LGSWRELASAFANDKTLILLNSTNQRSLAQTLVLSAYGMRNSESSNQYVR 792 (983)
Q Consensus 720 ~~t~~~LL~~L~~~~~~~~-~l~~------~~~~~~L~~~~~~~~~~~~l~~~~~~~l~~aL~~~~~~~~d~~~~~~~f~ 792 (983)
..+| .-|..++.. |+ .+.. .|.+..|++.... -+..++++.+..+|++++.+....++...+.+++.
T Consensus 558 ~~A~-~al~~l~~~---c~~~l~~~~~~e~~p~~~~il~~l~~--~~~~l~~~~~~~lyeai~~vi~~~~~~~~~~~~l~ 631 (1023)
T 4hat_C 558 DMAC-DTFIKIVQK---CKYHFVIQQPRESEPFIQTIIRDIQK--TTADLQPQQVHTFYKACGIIISEERSVAERNRLLS 631 (1023)
T ss_dssp HHHH-HHHHHHHHH---HTHHHHSCCTTCSSCHHHHHHHTHHH--HHTTSCHHHHHHHHHHHHHHHTTCCSHHHHHHHHH
T ss_pred HHHH-HHHHHHHHH---HHHHhhccCCCCCchhHHHHHHHHHH--HHHhCCHHHHHHHHHHHHHHHHhCCCHhhHHHHHH
Confidence 9999 899999886 33 3433 4567777765521 13356677788999999999988888777888999
Q ss_pred HHHHHHHHHHHHHhC----CCCcccccCchhHHHHHHHHHHHhhchhhccCCC
Q 002003 793 DLTRHATAYLVELSG----KNDLKNVSQQPDIILLVSCLLERLRGAANATEPR 841 (983)
Q Consensus 793 ~~~~pl~~~~~~l~~----~~~~~~~~~~~~vk~~i~~ll~~LrGia~a~~~~ 841 (983)
.+|.|+.+++.++.+ +| ....+++....+..+||++..++.+....
T Consensus 632 ~L~~~~~~~~~~l~~~~~~~~---~~~~d~~~~~~l~~il~~~~~v~~~lg~~ 681 (1023)
T 4hat_C 632 DLMQLPNMAWDTIVEQSTANP---TLLLDSETVKIIANIIKTNVAVCTSMGAD 681 (1023)
T ss_dssp HHTHHHHHHHHHHHHHHHHCT---TGGGCHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHhHHHHHHHHHHHHhcCc---hhhcCHHHHHHHHHHHHHHHHHHHHhcHH
Confidence 999999999999974 33 24456778888999999999888876653
No 2
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=100.00 E-value=1.1e-31 Score=343.79 Aligned_cols=673 Identities=14% Similarity=0.090 Sum_probs=428.6
Q ss_pred CCCCChhhHHHHHHHHHHHHHHhhCCCC---HHHHHHHHHhhhcCCChHHHHHHHHhcCCchhHHHHHHHHHHHHHhhcc
Q 002003 20 GGPADLAKLQSIMHSIEIACSSIQMHVN---PAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREW 96 (983)
Q Consensus 20 ~~~md~~~l~~~~~~lE~~~~~ly~~~~---r~~Ae~~L~~f~~~~~~~~~c~~ILe~S~~~y~~f~A~~~L~~~v~~~W 96 (983)
..+||..++ ++++++++.+|.+++ |++||+.|.+|+++|++|..|..||+++.+++++|+|+.+|++.|.++|
T Consensus 15 ~~~m~~~~~----~~l~~~l~~l~~~~~~~~r~~A~~~L~~~~~~p~~~~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w 90 (963)
T 2x19_B 15 AAPALDFTV----ENVEKALHQLYYDPNIENKNLAQKWLMQAQVSPQAWHFSWQLLQPDKVPEIQYFGASALHIKISRYW 90 (963)
T ss_dssp ---CCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHSTTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHCG
T ss_pred cccCCHhhH----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhCH
Confidence 356887676 889999999886554 8999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhhccCCCCCCchhhHHHHHHHHhccc----CCchhHHH
Q 002003 97 SFLTADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGI----HGVDTQFI 172 (983)
Q Consensus 97 ~~l~~~~r~~lr~~ll~yl~~~~~~l~~~V~~~l~~~la~I~K~gW~d~~~~~~~~~~~~v~~~l~~~----~s~~~~~i 172 (983)
..+++++|..||++|++++.+.. +.+++|+++++.+++.|+|++|++. |++++.++.+.+++. .++.++..
T Consensus 91 ~~l~~~~~~~ir~~ll~~l~~~~-~~~~~ir~kl~~~la~i~~~~~p~~----Wp~~l~~l~~~~~~~~~~~~~~~~~~~ 165 (963)
T 2x19_B 91 SDIPTDQYESLKAQLFTQITRFA-SGSKIVLTRLCVALASLALSMMPDA----WPCAVADMVRLFQAEDSPVDGQGRCLA 165 (963)
T ss_dssp GGSCGGGHHHHHHHHHHHHHHTT-TSCHHHHHHHHHHHHHHHHHHTTTT----STTHHHHHHHHHCC------CHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHhCccc----cchHHHHHHHHHhhhccCCCcHHHHHH
Confidence 99999999999999999999865 4579999999999999999999873 999999999988731 15568899
Q ss_pred HHHHHHHHHhhhCCCCCCCCCCChHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHh
Q 002003 173 GINFLESLVSEFSPSTSSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQI 252 (983)
Q Consensus 173 gl~iL~~lv~Efs~~~ss~~gl~~~~Hrk~~~sf~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~ 252 (983)
++.+|..+.+|....+. +.+.+.+++..++. .++.|+.++.+++... . ....+...+|+++
T Consensus 166 ~l~iL~~l~ee~~~~~~-----~~~~r~~~~~~l~~-~~~~i~~ll~~~l~~~-------~---~~~~~~~~~l~~l--- 226 (963)
T 2x19_B 166 LLELLTVLPEEFQTSRL-----PQYRKGLVRTSLAV-ECGAVFPLLEQLLQQP-------S---SPSCVRQKVLKCF--- 226 (963)
T ss_dssp HHHHHHHHHHHHTTCCC--------------CCSGG-GHHHHHHHHHHHHSCT-------T---CCHHHHHHHHHHH---
T ss_pred HHHHHHhCHHHHhcccC-----cHHHHHHHHHHHHH-HHHHHHHHHHHHHhCC-------C---CchHHHHHHHHHH---
Confidence 99999999998864321 22333444555544 4778887766665321 0 1123667777666
Q ss_pred cccccccCCCCCcccccccccccccccCCCCcccccccCCCccchHhhcccchHHHHHHHHHHHHhccccCCCCCCccch
Q 002003 253 LNWDFQFDTSGRKISINVFSAGVRTETSSSKRSECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIA 332 (983)
Q Consensus 253 LswdF~~~~~d~~~~~~~~~~~~~~~~~~~~s~~~~t~~~p~~Wr~~l~~~~~l~llf~ly~~lr~~~~~~~~~~~~~l~ 332 (983)
.+|...+... ..++.+++.+|+... ++++.
T Consensus 227 ~~wi~~~~~~-------------------------------------~~~~~ll~~l~~~l~-------------~~~~~ 256 (963)
T 2x19_B 227 SSWVQLEVPL-------------------------------------QDCEALIQAAFAALQ-------------DSELF 256 (963)
T ss_dssp HHHHTSSCCG-------------------------------------GGTHHHHHHHHHHTT-------------STTTH
T ss_pred HHHHcCCCCc-------------------------------------ccchHHHHHHHHHhC-------------CchHH
Confidence 3577643310 123556777776541 36799
Q ss_pred HHHHHHHHHHHhccCCccCCCChhhHHHHHHHHHHhhhhhcCChhhhHHHhhhCCChhhHHHHHHHHHHHHhhcChhhHH
Q 002003 333 VSARKLIVQLCSLTGTVFPSDNGKMQEHHLLQLLSGILEWVDPPDVVAQAIESGKSESEMLDGCRALLSIATVTTPFVFD 412 (983)
Q Consensus 333 ~~al~cL~qLaSl~~~~f~~~~~~~r~~yl~~~l~~~~~il~~~~~~~~~~~~gl~~~~~~e~cr~L~rL~~~~~~~~l~ 412 (983)
..+++|+.++.+.+.+ . .+.+++..++.++...++. ...+... -+.+.+..+|+++.++...+. ..+.
T Consensus 257 ~~a~~~l~~i~~~~~~---~----~~~~~~~~l~~~~~~~~~~---~~~~~~~-~d~~~~~~~~~l~~~~~~~~~-~~l~ 324 (963)
T 2x19_B 257 DSSVEAIVNAISQPDA---Q----RYVNTLLKLIPLVLGLQEQ---LRQAVQN-GDMETSHGICRIAVALGENHS-RALL 324 (963)
T ss_dssp HHHHHHHHHHHTCTTG---G----GCHHHHHHHHHHHHTTHHH---HHHHHHT-TCHHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHccccc---c----cCHHHHHHHHHHHHhhHHH---HHHHHHC-CCHHHHHHHHHHHHHHHHHhH-HHHH
Confidence 9999999999986532 1 1345777777776655321 1111111 133677899999999988764 2222
Q ss_pred HhhhccCchhhHHHHHHHHHHHHHHHhhcccccCcccHHHHHHHHHHHHHhhhcccccCCC--CCCChhhhhhHHHHHHH
Q 002003 413 RLLKSIRPFGTLTLLSNLMCEVVKVLMMNNTEEGTWSWEARDILLDTWTTLLVSLDSTGRN--VVLPLEVRNAAASLFAL 490 (983)
Q Consensus 413 ~l~~s~~~~~~l~~L~~Lt~~~i~~~~~~~~~~~~~~~es~~~LL~~W~~lv~~~~~~~~~--~~~p~~l~~~~~~I~~~ 490 (983)
.-... ...+..++..++. .+..... +....+....++++|..++........+ .........+..+|...
T Consensus 325 ~~~~~------~~~~~~~l~~ll~-~~~~~~~-~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 396 (963)
T 2x19_B 325 DQVEH------WQSFLALVNMIMF-CTGIPGH-YPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDV 396 (963)
T ss_dssp HCGGG------HHHHHHHHHHHHH-HHTCSSC-TTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCccc------hHHHHHHHHHHHH-HHcCCCC-CCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 10000 0111122222222 1221100 0111233677899999999854332100 00001112344555555
Q ss_pred HHHhhhccccccccCCCcccchhhccHHH-HHHHHHHHHHHHHHcHhhhHHHHHHHHHHHHHHHhcccCCCCcchhhHHH
Q 002003 491 IVESELKVASASAMDDNGEFNYLQASISA-MDERLSSYALIARAAIDATVPLLTRLFSERFARLHQGRGMIDPTETLEEL 569 (983)
Q Consensus 491 yi~srL~~~~~~~~~d~d~de~~e~d~~~-~~eqL~~ia~l~R~~~~~t~~lL~~l~~~~~~~l~~~~~~~~~~~~~E~L 569 (983)
.+. ++..++....++ +|++++++... ..+--+.+-.+++..++.+++.+.+.+.+.++++ ..+.+ +...
T Consensus 397 ll~-~~~~p~~~~~~~--~~~de~~~~~~~r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~l~~~---~~~~~----w~~~ 466 (963)
T 2x19_B 397 LLH-KAQFPSDEEYGF--WSSDEKEQFRIYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSS---EEPYS----WQHT 466 (963)
T ss_dssp HHH-HHSCCCHHHHHT--SCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTC---CCSCC----HHHH
T ss_pred HHH-HHcCCCcccccC--CChhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhc---CCCCc----hHHH
Confidence 443 444332211111 11111222222 3345566777788888888898888888777655 11112 2222
Q ss_pred HHHHHHHHhHhccCCCCCccccchhhhhhhhhhhhhccChHHHHHHHHHHHHHHhcCccCcccCCCHHHHHHHHHHHHHH
Q 002003 570 YSLLLITGHVLADEGEGEIPVVPNAIQTHFVDTIEAAKHPVVLLCGSIIKFAEWSLDPEARASVFSPRLMEAIVWFLARW 649 (983)
Q Consensus 570 ~WLv~i~G~~Lad~~~gE~~~iP~~i~~~~~~~~~~~~d~v~~L~~~vl~l~~~~l~~~~~~~~~Sp~L~~a~lwFl~~~ 649 (983)
.=.++..|++..+-.+.+ .+.+. .+++... .+.. -+|.+..+.+|++++|
T Consensus 467 eaal~al~~i~~~~~~~~-------------------~~~l~----~l~~~l~-~l~~------~~~~vr~~~~~~l~~~ 516 (963)
T 2x19_B 467 EALLYGFQSIAETIDVNY-------------------SDVVP----GLIGLIP-RISI------SNVQLADTVMFTIGAL 516 (963)
T ss_dssp HHHHHHHHHHTTSCCSSC-------------------CSHHH----HHHHHGG-GSCC------CSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhcCchh-------------------hHHHH----HHHHHHH-hCCC------CcHHHHHHHHHHHHHH
Confidence 334566666443221111 11112 2333211 1111 1688999999999998
Q ss_pred HHhhcCCccccccCCCCcCCCCCccccccchhhHHHhhhcCCCChhhHHHHHHHHHHHhccCCCCchhHHHHHHHHHHHH
Q 002003 650 SQTYLMPLEEFRDSSTNLCHDTGYQHQSSTSRKALLSFFGEHNQGKPVLDIIVRISMTTLVSYPGEKDLQELTCNQLLHA 729 (983)
Q Consensus 650 ~~~Yl~~~~~~~~~~~~~~~~~~y~~~s~~~~~~L~~~fg~~~~~~~vl~~lv~ki~~nL~~w~~e~~vi~~t~~~LL~~ 729 (983)
+. |+.++ ...+..++++++..|.. ++|...++ ..|..
T Consensus 517 ~~-~l~~~-------------------------------------~~~l~~vl~~l~~~l~~----~~V~~~A~-~al~~ 553 (963)
T 2x19_B 517 SE-WLADH-------------------------------------PVMINSVLPLVLHALGN----PELSVSSV-STLKK 553 (963)
T ss_dssp HH-HHHHC-------------------------------------HHHHTTTHHHHHHHTTC----GGGHHHHH-HHHHH
T ss_pred HH-HHHhC-------------------------------------HHHHHHHHHHHHHHhCC----chHHHHHH-HHHHH
Confidence 74 21111 02233355666666643 78888999 89999
Q ss_pred HhccccchhhhhcchHHHHHHHHhhcccccccccchhhHHHHHHHHHHhhcCCCchhhhHHHHHHHHHHHHHHHHHhCCC
Q 002003 730 LVRRKNVCVHLVALGSWRELASAFANDKTLILLNSTNQRSLAQTLVLSAYGMRNSESSNQYVRDLTRHATAYLVELSGKN 809 (983)
Q Consensus 730 L~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~l~~~~~~~l~~aL~~~~~~~~d~~~~~~~f~~~~~pl~~~~~~l~~~~ 809 (983)
++.... ..+ .|.+..|++....--.-..++.+.+..+|++++.++...+ .+....|+..+|.|+.+++..+.+.+
T Consensus 554 l~~~~~--~~l--~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~-~~~~~~~~~~l~~~l~~~l~~~~~~~ 628 (963)
T 2x19_B 554 ICRECK--YDL--PPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQ-VEEILKNLHSLISPYIQQLEKLAEEI 628 (963)
T ss_dssp HHHHTG--GGC--TTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHH--HHH--HhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 987522 222 2656666554311000002345678889999999976665 45678899999999999999987644
Q ss_pred CcccccCchhHHHHHHHHHHHhhchhhccCCC------------------cHHHHHHHHHhhHHHHHHHHHHhccchHHH
Q 002003 810 DLKNVSQQPDIILLVSCLLERLRGAANATEPR------------------TQKAIYEMGFSVMNPVLLLLEVYKHESAVV 871 (983)
Q Consensus 810 ~~~~~~~~~~vk~~i~~ll~~LrGia~a~~~~------------------~~~~lf~~i~~~l~~l~~l~~~y~~~p~Vv 871 (983)
. +++.+..+..+++++.+++++.... +...+...+..+++.+.++++.|.++++|+
T Consensus 629 ~------~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~ 702 (963)
T 2x19_B 629 P------NPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVV 702 (963)
T ss_dssp S------CHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred C------CHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhccCchHHH
Confidence 2 5788888999999999999998653 113466677778899999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 002003 872 YLLLKFVVDWVDG 884 (983)
Q Consensus 872 ~~iLkff~elv~~ 884 (983)
..+.+++..++..
T Consensus 703 e~~~~~l~~~~~~ 715 (963)
T 2x19_B 703 EAVCAIFEKSVKT 715 (963)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998864
No 3
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=100.00 E-value=1.4e-31 Score=338.41 Aligned_cols=638 Identities=13% Similarity=0.163 Sum_probs=418.5
Q ss_pred HHHHHHHHHhhCCCC--HHHHHHHHHhhhcCCChHHHHHHHHhcCCchhHHHHHHHHHHHHHhhccCCCCHHHHHHHHHH
Q 002003 33 HSIEIACSSIQMHVN--PAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGF 110 (983)
Q Consensus 33 ~~lE~~~~~ly~~~~--r~~Ae~~L~~f~~~~~~~~~c~~ILe~S~~~y~~f~A~~~L~~~v~~~W~~l~~~~r~~lr~~ 110 (983)
++||+++.++|.|.+ |++|+++|.+|+++|++|..|..||++|++++++|||+++|++.|.++|..+++++|.+||++
T Consensus 28 ~~Le~lv~~ly~p~~~~r~qA~~~L~q~q~sp~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~e~~~~LR~~ 107 (1073)
T 3gjx_A 28 NLLDNVVNCLYHGEGAQQRMAQEVLTHLKEHPDAWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPRNQCEGIKKY 107 (1073)
T ss_dssp HHHHHHHHTTTCSSHHHHHHHHHHHHTSSCCSCHHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHcCchHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCHHHHHHHHHH
Confidence 779999999999854 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCC-----ChhHHHHHHHHHHHHHHhhccCCCCCCchhhHHHHHHHHhcccCCchhHHHHHHHHHHHHhhhC
Q 002003 111 CLCFVMQHASS-----PEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFS 185 (983)
Q Consensus 111 ll~yl~~~~~~-----l~~~V~~~l~~~la~I~K~gW~d~~~~~~~~~~~~v~~~l~~~~s~~~~~igl~iL~~lv~Efs 185 (983)
+++|+.+...+ .++.+++|+++++|.|+|++|++. |++++.++.+.++ .++.++..++.+|..+.+|..
T Consensus 108 Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~----Wp~fi~dLv~~~~--~~~~~~~~~L~IL~~L~EEV~ 181 (1073)
T 3gjx_A 108 VVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKH----WPTFISDIVGASR--TSESLCQNNMVILKLLSEEVF 181 (1073)
T ss_dssp HHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTT----CTTHHHHHHHHHH--HCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhh----ccHHHHHHHHHhC--CCHHHHHHHHHHHHHHHHHHH
Confidence 99999885322 246778999999999999999984 9999999999987 477889999999999999975
Q ss_pred CCCCCCCCCChHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHhcccccccCCCCCc
Q 002003 186 PSTSSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWDFQFDTSGRK 265 (983)
Q Consensus 186 ~~~ss~~gl~~~~Hrk~~~sf~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~LswdF~~~~~d~~ 265 (983)
....+ .++-.+..+.+..++.. ++.||.++.++|+.. ....++..+|+++..+++|...+
T Consensus 182 d~~~~--~l~~~r~~~lk~~L~~~-~~~Il~ll~~iL~~~-----------~~~~lv~~~L~~L~~~~sWI~i~------ 241 (1073)
T 3gjx_A 182 DFSSG--QITQVKAKHLKDSMCNE-FSQIFQLCQFVMENS-----------QNAPLVHATLETLLRFLNWIPLG------ 241 (1073)
T ss_dssp TSHHH--HBCHHHHHHHHHHHHHT-CHHHHHHHHHHHHHC-----------CCHHHHHHHHHHHHHHTTTSCTH------
T ss_pred hcccc--cccHHHHHHHHHHHHHH-HHHHHHHHHHHhccc-----------CCHHHHHHHHHHHHHHHHhcCHH------
Confidence 43221 23455677888899765 889999887777531 24568899999999999998654
Q ss_pred ccccccccccccccCCCCcccccccCCCccchHhhcccchHHHHH-HHHHHHHhccccCCCCCCccchHHHHHHHHHHHh
Q 002003 266 ISINVFSAGVRTETSSSKRSECIIVQPGPAWCDALISSGHIVWLL-NLYSALRQKFSSEGYWLDCPIAVSARKLIVQLCS 344 (983)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~s~~~~t~~~p~~Wr~~l~~~~~l~llf-~ly~~lr~~~~~~~~~~~~~l~~~al~cL~qLaS 344 (983)
.+.+++++++++ .+ + .++.+...|.+||.++.+
T Consensus 242 ---------------------------------~i~~~~ll~~L~~~~---L----------~~~~~r~aA~dcL~eIv~ 275 (1073)
T 3gjx_A 242 ---------------------------------YIFETKLISTLIYKF---L----------NVPMFRNVSLKCLTEIAG 275 (1073)
T ss_dssp ---------------------------------HHHSSSHHHHHHHHT---S----------SSHHHHHHHHHHHHHHHH
T ss_pred ---------------------------------HhccchHHHHHHHHh---c----------CChHHHHHHHHHHHHHHh
Confidence 256677888774 33 2 136789999999999999
Q ss_pred ccCCccCCCChhhHHHHHHHHHHhhhhhcCChhhhHHHhhhCCC-h-hhHHHHHHHHHHHHhhcChhhHHHhhhccCchh
Q 002003 345 LTGTVFPSDNGKMQEHHLLQLLSGILEWVDPPDVVAQAIESGKS-E-SEMLDGCRALLSIATVTTPFVFDRLLKSIRPFG 422 (983)
Q Consensus 345 l~~~~f~~~~~~~r~~yl~~~l~~~~~il~~~~~~~~~~~~gl~-~-~~~~e~cr~L~rL~~~~~~~~l~~l~~s~~~~~ 422 (983)
.+.+ +....-.+.+..+|..+..+++.......+...|-. + +-+..+||++..+..+|. ..+.. .+....
T Consensus 276 k~~~----~~~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~-~lIe~---~p~~~~ 347 (1073)
T 3gjx_A 276 VSVS----QYEEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHG-QLLEK---RLNLRE 347 (1073)
T ss_dssp SCSG----GGHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHH-HHHHH---CGGGHH
T ss_pred cccc----chHHHHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHH-HHHhc---CccchH
Confidence 8532 111112334445555566777655445555555533 3 334568888888877773 22221 111111
Q ss_pred hHHHHHHHHHHHHHHHhhcccccCcccHHHHHHHHHHHHHhhhcccccC----CCC---------CCChhhh---hhHHH
Q 002003 423 TLTLLSNLMCEVVKVLMMNNTEEGTWSWEARDILLDTWTTLLVSLDSTG----RNV---------VLPLEVR---NAAAS 486 (983)
Q Consensus 423 ~l~~L~~Lt~~~i~~~~~~~~~~~~~~~es~~~LL~~W~~lv~~~~~~~----~~~---------~~p~~l~---~~~~~ 486 (983)
++...-++ ++.. +.. .-.|.+.++++.|..|++.+-.-. +.. .+|.... ....+
T Consensus 348 ~l~~~l~~---ll~~----s~~---~d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~ 417 (1073)
T 3gjx_A 348 ALMEALHY---MLLV----SEV---EETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSK 417 (1073)
T ss_dssp HHHHHHHH---HHHH----TTC---SCHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHH
T ss_pred HHHHHHHH---HHHH----hCC---CcHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHH
Confidence 22111111 1111 111 136999999999999988652100 000 1222111 11222
Q ss_pred HHHHHHHhhhccccccccCCCcccchh-----hc-cHHHHHHHHHHHHHHHHHcHhhhHHHHHHHHHHHHHHHhcccCCC
Q 002003 487 LFALIVESELKVASASAMDDNGEFNYL-----QA-SISAMDERLSSYALIARAAIDATVPLLTRLFSERFARLHQGRGMI 560 (983)
Q Consensus 487 I~~~yi~srL~~~~~~~~~d~d~de~~-----e~-d~~~~~eqL~~ia~l~R~~~~~t~~lL~~l~~~~~~~l~~~~~~~ 560 (983)
+... +-+||..|+.....|+|..|-. +. +.+.|+-.=+++..+....++.+...+.+.+.+..+ +.
T Consensus 418 L~~v-lI~~m~~P~ev~i~e~e~ge~~re~~~d~~~~~ly~~mrd~L~~lt~l~~~~~~~i~~~~l~~~~~------~~- 489 (1073)
T 3gjx_A 418 VRLL-MVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLTHLDYVDTEIIMTKKLQNQVN------GT- 489 (1073)
T ss_dssp HHHH-HHHTCCCSCCEEEEECSSSCEEEEECSSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHT------SC-
T ss_pred HHHH-HHHhcCCCccccccCcccchHHHHHHhhcchHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc------CC-
Confidence 2222 4488998875432222111110 11 122333333444666777788888877776655432 11
Q ss_pred Cc-chhhHHHHHHHHHHHhHhccCCCCCccccchhhhhhhhhhhhhccChHHHHHHHHHHHHHHhcCccCcccCCCHHHH
Q 002003 561 DP-TETLEELYSLLLITGHVLADEGEGEIPVVPNAIQTHFVDTIEAAKHPVVLLCGSIIKFAEWSLDPEARASVFSPRLM 639 (983)
Q Consensus 561 ~~-~~~~E~L~WLv~i~G~~Lad~~~gE~~~iP~~i~~~~~~~~~~~~d~v~~L~~~vl~l~~~~l~~~~~~~~~Sp~L~ 639 (983)
.+ =...|.+-|- +|+ +++... | +.+...+..++.-++++++.. .+.. --+.+.
T Consensus 490 ~~sW~~lea~~~a---iga-Iag~~~------~-----------~~E~~~Lp~vi~~Ll~L~e~~--~~kd---~k~~va 543 (1073)
T 3gjx_A 490 EWSWKNLNTLCWA---IGS-ISGAMH------E-----------EDEKRFLVTVIKDLLGLCEQK--RGKD---NKAIIA 543 (1073)
T ss_dssp CCCHHHHHHHHHH---HHH-TTTSSC------H-----------HHHHHHHHHHHHHHHHHHHHS--CSHH---HHHHHH
T ss_pred CCCHHHHhHHHHH---HHH-HHCcCC------c-----------ccccchHHHHHHHHhcccccc--cccc---hhHHHH
Confidence 11 1233454444 444 322211 0 001123466777777777642 1110 124566
Q ss_pred HHHHHHHHHHHHhhcCCccccccCCCCcCCCCCccccccchhhHHHhhhcCCCChhhHHHHHHHHHHHhccCCCCchhHH
Q 002003 640 EAIVWFLARWSQTYLMPLEEFRDSSTNLCHDTGYQHQSSTSRKALLSFFGEHNQGKPVLDIIVRISMTTLVSYPGEKDLQ 719 (983)
Q Consensus 640 ~a~lwFl~~~~~~Yl~~~~~~~~~~~~~~~~~~y~~~s~~~~~~L~~~fg~~~~~~~vl~~lv~ki~~nL~~w~~e~~vi 719 (983)
.+++|.++|+.+ |+. .+...+..+++|++.-+. ...++|.
T Consensus 544 s~i~~vlgrY~~-------------------------------wl~-------~h~~~L~~vl~~L~~~m~--~~~~~vq 583 (1073)
T 3gjx_A 544 SNIMYIVGQYPR-------------------------------FLR-------AHWKFLKTVVNKLFEFMH--ETHDGVQ 583 (1073)
T ss_dssp HHHHHHHHHCHH-------------------------------HHH-------HCHHHHHHHHHHHHHHTT--CCSTTHH
T ss_pred HHHHHHHhhhHH-------------------------------HHH-------hCHHHHHHHHHHHHHHHh--cCCHHHH
Confidence 778898887421 443 123445556666654332 2467899
Q ss_pred HHHHHHHHHHHhccccchh-hhhc------chHHHHHHHHhhcccccccccchhhHHHHHHHHHHhhcCCCchhhhHHHH
Q 002003 720 ELTCNQLLHALVRRKNVCV-HLVA------LGSWRELASAFANDKTLILLNSTNQRSLAQTLVLSAYGMRNSESSNQYVR 792 (983)
Q Consensus 720 ~~t~~~LL~~L~~~~~~~~-~l~~------~~~~~~L~~~~~~~~~~~~l~~~~~~~l~~aL~~~~~~~~d~~~~~~~f~ 792 (983)
..+| +-|..++.. |+ .++. .|-...|+++... -+..++++....||.+++.+....++...+.+++.
T Consensus 584 ~aA~-~af~~i~~~---C~~~lv~~~~~e~~p~i~~il~~~~~--~~~~l~~~~~~~lyeav~~vi~~~p~~~~~~~~i~ 657 (1073)
T 3gjx_A 584 DMAC-DTFIKIAQK---CRRHFVQVQVGEVMPFIDEILNNINT--IICDLQPQQVHTFYEAVGYMIGAQTDQTVQEHLIE 657 (1073)
T ss_dssp HHHH-HHHHHHHHH---TGGGGTSCCTTCSSCHHHHHHTSHHH--HHTTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred HHHH-HHHHHHHHH---HHHHHhhccccccchHHHHHHHHHHH--HHHhcCHHHHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 9999 888888876 33 2333 2455667665422 24566778889999999999988888766788999
Q ss_pred HHHHHHHHHHHHHhCC--CCcccccCchhHHHHHHHHHHHhhchhhccCCC
Q 002003 793 DLTRHATAYLVELSGK--NDLKNVSQQPDIILLVSCLLERLRGAANATEPR 841 (983)
Q Consensus 793 ~~~~pl~~~~~~l~~~--~~~~~~~~~~~vk~~i~~ll~~LrGia~a~~~~ 841 (983)
.+|.|+-+++.++.++ .+ .....+++....+..++|+...+|.|.-..
T Consensus 658 ~Lm~~~~~~w~~l~~~~~~~-~~~~~d~~~i~~l~~il~~n~~v~~~~g~~ 707 (1073)
T 3gjx_A 658 KYMLLPNQVWDSIIQQATKN-VDILKDPETVKQLGSILKTNVRACKAVGHP 707 (1073)
T ss_dssp HHTHHHHHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHHHHHHhhcC-chhccChHHHHHHHHHHhhhHHHHhhcchh
Confidence 9999999999999751 11 134557777788999999998888877653
No 4
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=99.96 E-value=6.4e-26 Score=294.76 Aligned_cols=694 Identities=11% Similarity=0.107 Sum_probs=416.5
Q ss_pred CChhhHHHHHHHHHHHHHHhhCCC-C---HHHHHHHHHhhhcCCChHHHHHHHHh-cCCchhHHHHHHHHHHHHHhhccC
Q 002003 23 ADLAKLQSIMHSIEIACSSIQMHV-N---PAAAEATILGLCQSPQPYKACQFILE-NSQVANARFQAAAAIRDAAMREWS 97 (983)
Q Consensus 23 md~~~l~~~~~~lE~~~~~ly~~~-~---r~~Ae~~L~~f~~~~~~~~~c~~ILe-~S~~~y~~f~A~~~L~~~v~~~W~ 97 (983)
|+|++++++.++++++++.+|.|. + |++||+.|.+|+++|+.|..|..+|. .+.+++++|+|+.+|++.|.++|.
T Consensus 1 ~~~~~~~~~~~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~ 80 (1204)
T 3a6p_A 1 MAMDQVNALCEQLVKAVTVMMDPNSTQRYRLEALKFCEEFKEKCPICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWN 80 (1204)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGG
T ss_pred CChhhHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhCchHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcc
Confidence 455666777899999999999983 3 89999999999999999999999887 788999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCC---CChhHHHHHHHHHHHHHHhhccCCCCCCchhhHHHHHHHHhcccCCchhHHHHH
Q 002003 98 FLTADEKKSLIGFCLCFVMQHAS---SPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGI 174 (983)
Q Consensus 98 ~l~~~~r~~lr~~ll~yl~~~~~---~l~~~V~~~l~~~la~I~K~gW~d~~~~~~~~~~~~v~~~l~~~~s~~~~~igl 174 (983)
.++.++|..||+++++++.+... +.+++|++++++++|.|+|++|++ .|++++.++.++++ .++.++..++
T Consensus 81 ~l~~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~----~Wp~ll~~L~~~~~--~~~~~~e~~L 154 (1204)
T 3a6p_A 81 GMSRLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQ----HWPDMLIELDTLSK--QGETQTELVM 154 (1204)
T ss_dssp GSCHHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTT----TCTTHHHHHHHHHH--TCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcc----cchHHHHHHHHHhc--CCHHHHHHHH
Confidence 99999999999999999987632 157999999999999999999996 49999999999997 3678899999
Q ss_pred HHHHHHHhhhCCCCCCCCCCChHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHh------h-hchhhhhhHHHHHHHHH
Q 002003 175 NFLESLVSEFSPSTSSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQI------I-ESDAAASEVKACTAALR 247 (983)
Q Consensus 175 ~iL~~lv~Efs~~~ss~~gl~~~~Hrk~~~sf~~~~L~~if~~~~~~L~~~~~~~------~-~~~~~~~~~~l~~~~L~ 247 (983)
.+|..+.+|+..... +....+++.+..+++. +++||.++.++|++..... . +.+...+...++.++|+
T Consensus 155 ~iL~~L~Eev~~~~~----~~~~r~~~l~~~l~~~-~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~ 229 (1204)
T 3a6p_A 155 FILLRLAEDVVTFQT----LPPQRRRDIQQTLTQN-MERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALN 229 (1204)
T ss_dssp HHHHHHHHHHHTSCC----SCHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccccc----hHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHH
Confidence 999999999654321 2335667788899876 9999999999997643210 0 00111234568999999
Q ss_pred HHHHhcccccccCCCCCcccccccccccccccCCCCcccccccCCCccchHhhcc--cchHHHHHHHHHHHHhccccCCC
Q 002003 248 LLHQILNWDFQFDTSGRKISINVFSAGVRTETSSSKRSECIIVQPGPAWCDALIS--SGHIVWLLNLYSALRQKFSSEGY 325 (983)
Q Consensus 248 l~~~~LswdF~~~~~d~~~~~~~~~~~~~~~~~~~~s~~~~t~~~p~~Wr~~l~~--~~~l~llf~ly~~lr~~~~~~~~ 325 (983)
++.++++|...+. +.+ +.+++++|.++.
T Consensus 230 ~l~~~l~Wi~~~~---------------------------------------i~~~~~~ll~~l~~~l~----------- 259 (1204)
T 3a6p_A 230 TLAGYIDWVSMSH---------------------------------------ITAENCKLLEILCLLLN----------- 259 (1204)
T ss_dssp HHHTTTTTSCHHH---------------------------------------HHTTTSHHHHHHHHGGG-----------
T ss_pred HHHHHHhccCHHH---------------------------------------HHhccchHHHHHHHHcC-----------
Confidence 9999999977643 122 247888875432
Q ss_pred CCCccchHHHHHHHHHHHhccCCccCCCChhhHHHHHHHH----HHhhhhhcCChhhhHHHhhhCCChhhHHHHHHHHHH
Q 002003 326 WLDCPIAVSARKLIVQLCSLTGTVFPSDNGKMQEHHLLQL----LSGILEWVDPPDVVAQAIESGKSESEMLDGCRALLS 401 (983)
Q Consensus 326 ~~~~~l~~~al~cL~qLaSl~~~~f~~~~~~~r~~yl~~~----l~~~~~il~~~~~~~~~~~~gl~~~~~~e~cr~L~r 401 (983)
++++...|++||+++++.+++ + + ++..++..+ +.++....... ...++ +++-+++|+.+.+
T Consensus 260 --~~~lr~~A~ecL~~i~s~~~~--~--~--~~~~li~~l~~~~l~~l~~~~~~~------~~~~~-~e~d~e~~k~l~~ 324 (1204)
T 3a6p_A 260 --EQELQLGAAECLLIAVSRKGK--L--E--DRKPLMVLFGDVAMHYILSAAQTA------DGGGL-VEKHYVFLKRLCQ 324 (1204)
T ss_dssp --CTTTHHHHHHHHHHHHTCCSC--H--H--HHGGGGGGGSHHHHHHHHHHHHTC------CCCSC-CHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHHHHhCCCC--h--h--hHHHHHHHHhhHHHHHHHHHhhcC------CCCCC-ccHHHHHHHHHHH
Confidence 377999999999999998764 1 1 233233211 11222221000 00122 3444566666666
Q ss_pred HHhhcChhhHHHhhhcc---CchhhHHHHHHHHHHHHHHHhhcccccCcccHHHHHHHHHHHHHhhhcccccCCCCCCCh
Q 002003 402 IATVTTPFVFDRLLKSI---RPFGTLTLLSNLMCEVVKVLMMNNTEEGTWSWEARDILLDTWTTLLVSLDSTGRNVVLPL 478 (983)
Q Consensus 402 L~~~~~~~~l~~l~~s~---~~~~~l~~L~~Lt~~~i~~~~~~~~~~~~~~~es~~~LL~~W~~lv~~~~~~~~~~~~p~ 478 (983)
+...+. ..+..++... .....+..+-.++..+ +.. ...+.....+++|.+++.+... . ..+
T Consensus 325 ll~~lg-~~l~~l~~~~~~~~~~~~l~~~l~~lL~~----t~~------~~~~vs~~~l~fW~~ll~~~~~--~---~~~ 388 (1204)
T 3a6p_A 325 VLCALG-NQLCALLGADSDVETPSNFGKYLESFLAF----TTH------PSQFLRSSTQMTWGALFRHEIL--S---RDP 388 (1204)
T ss_dssp HHHHHH-HHHHHHHHTCSSCCCCTTHHHHHHHHHHH----HTS------SCHHHHHHHHHHHHHHHSCTTT--T---TCH
T ss_pred HHHHHH-HHHHHHHhccccccChhHHHHHHHHHHHH----HhC------ccHHhHHHHHHHHHHHHhcccc--c---ccH
Confidence 655542 2233322110 0011122222222222 221 1235556668999999986421 0 123
Q ss_pred hhhhhHHHHHHHHH--Hhhhcccccccc-------CCCcccchhhcc-HHHHHHHHHHHHHHHHHcHhhhHHHHHHHHHH
Q 002003 479 EVRNAAASLFALIV--ESELKVASASAM-------DDNGEFNYLQAS-ISAMDERLSSYALIARAAIDATVPLLTRLFSE 548 (983)
Q Consensus 479 ~l~~~~~~I~~~yi--~srL~~~~~~~~-------~d~d~de~~e~d-~~~~~eqL~~ia~l~R~~~~~t~~lL~~l~~~ 548 (983)
.+..+.+++...-. -.|+..++.... +|.|++++.+++ ++.+.+..+.+-.+++..|..+++.+.+.+.+
T Consensus 389 ~~~~~l~~Ll~vl~~~l~k~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p~~~l~~v~~~l~~ 468 (1204)
T 3a6p_A 389 LLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDPKTSFQMAGEWLKY 468 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCccccCCcchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 34456667766631 135555442210 111111111122 23345778889999999999999888887766
Q ss_pred HHHHHhccc-C------------CCCc-chhhHHHHHHHHHHHhHhccCCCCCccccchhhhhhhhhhhhhccChHHHHH
Q 002003 549 RFARLHQGR-G------------MIDP-TETLEELYSLLLITGHVLADEGEGEIPVVPNAIQTHFVDTIEAAKHPVVLLC 614 (983)
Q Consensus 549 ~~~~l~~~~-~------------~~~~-~~~~E~L~WLv~i~G~~Lad~~~gE~~~iP~~i~~~~~~~~~~~~d~v~~L~ 614 (983)
++....... + .-.+ ...+-..-=.+..+++++.+-.. ..+...-+ ..++
T Consensus 469 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~----------------~~e~~~l~-~~~~ 531 (1204)
T 3a6p_A 469 QLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFR----------------TLNREEIP-VNDG 531 (1204)
T ss_dssp HHTCC-----------------CCSCSSSHHHHHHHHHHHHHHHHHHHHHH----------------HSCTTCCC-HHHH
T ss_pred HHhhhhcccccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhc----------------cccccccc-HHHH
Confidence 654211110 0 0000 00011111123334444321100 00000001 0233
Q ss_pred HHHHHHHHHhcCccCcccCCCHHHHHHHHHHHHHHHHhhcCCccccccCCCCcCCCCCccccccchhhHHHhhhcCCCCh
Q 002003 615 GSIIKFAEWSLDPEARASVFSPRLMEAIVWFLARWSQTYLMPLEEFRDSSTNLCHDTGYQHQSSTSRKALLSFFGEHNQG 694 (983)
Q Consensus 615 ~~vl~l~~~~l~~~~~~~~~Sp~L~~a~lwFl~~~~~~Yl~~~~~~~~~~~~~~~~~~y~~~s~~~~~~L~~~fg~~~~~ 694 (983)
..+++.+-. ++ . -.|.+..+.+..++++.. |+. .+
T Consensus 532 ~~Ll~~ll~-~~--~----~~p~l~~~~i~~l~~l~~-~~~----------------------------------~~--- 566 (1204)
T 3a6p_A 532 IELLQMVLN-FD--T----KDPLILSCVLTNVSALFP-FVT----------------------------------YR--- 566 (1204)
T ss_dssp HHHHHHHHH-CC--C----SCHHHHHHHHHHHHHHGG-GGG----------------------------------TC---
T ss_pred HHHHHHHHh-CC--C----CChHHHHHHHHHHHHHHH-HHh----------------------------------cC---
Confidence 344444211 11 1 257777777777766421 111 01
Q ss_pred hhHHHHHHHHHHHhccCCC----------CchhHHHHHHHHHHHHHhccccchhhhhcchHHHHHHHHhhccccccc-cc
Q 002003 695 KPVLDIIVRISMTTLVSYP----------GEKDLQELTCNQLLHALVRRKNVCVHLVALGSWRELASAFANDKTLIL-LN 763 (983)
Q Consensus 695 ~~vl~~lv~ki~~nL~~w~----------~e~~vi~~t~~~LL~~L~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~-l~ 763 (983)
...+.-++++++..+..++ +..+|...++ ..|..|+.... ..| .|.+..|.+....-..-.. +.
T Consensus 567 p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~-~al~~L~~~~~--~~L--~p~~~~i~~~~~~~l~~~~~l~ 641 (1204)
T 3a6p_A 567 PEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHAC-SSIIKMCRDYP--QLV--LPNFDMLYNHVKQLLSNELLLT 641 (1204)
T ss_dssp GGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHH-HHHHHHHHHCH--HHH--GGGHHHHHHHHHHHHHSTTTSC
T ss_pred chHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHH-HHHHHHHHHhh--HHH--HHHHHHHHHHHHHHHhCccccc
Confidence 1222233444444443322 2346888888 89998888642 233 2666666554421100012 55
Q ss_pred chhhHHHHHHHHHHhhcCCCchhhhHHHHHHHHHHHHHHHH-----HhCCC-Cccc-----------ccCchhHH--H--
Q 002003 764 STNQRSLAQTLVLSAYGMRNSESSNQYVRDLTRHATAYLVE-----LSGKN-DLKN-----------VSQQPDII--L-- 822 (983)
Q Consensus 764 ~~~~~~l~~aL~~~~~~~~d~~~~~~~f~~~~~pl~~~~~~-----l~~~~-~~~~-----------~~~~~~vk--~-- 822 (983)
..-+..||.+++.++....+.+...+|+..++.|+.+++.+ ..+++ .|.. ...+++-+ .
T Consensus 642 ~~e~~~L~eal~~ia~~~~~~~~~~~~l~~ll~P~~~~w~~~~~~~~~s~~~~f~~~~G~~~~~~~~~~~d~~~~~r~~l 721 (1204)
T 3a6p_A 642 QMEKCALMEALVLISNQFKNYERQKVFLEELMAPVASIWLSQDMHRVLSDVDAFIAYVGTDQKSCDPGLEDPCGLNRARM 721 (1204)
T ss_dssp HHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHSCHHHHHHHHCHHHHHHHHTSSCC--CTTCCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHccHHHHHhhcCHHHHHHHhCCCCCcccccccchhhhhHHHH
Confidence 66678899999988544555555677899999999988763 22221 1110 01122222 3
Q ss_pred -----HHHHHHHHh----------hc-hhhccCCCc---H-HHHHHHHHhhHHHHHHHHHHhc--cchHHHHHHH
Q 002003 823 -----LVSCLLERL----------RG-AANATEPRT---Q-KAIYEMGFSVMNPVLLLLEVYK--HESAVVYLLL 875 (983)
Q Consensus 823 -----~i~~ll~~L----------rG-ia~a~~~~~---~-~~lf~~i~~~l~~l~~l~~~y~--~~p~Vv~~iL 875 (983)
.+.+.+++. +| .+.+..++. + ....+.+.+++|.++++++..+ ++|++...+-
T Consensus 722 ~~~~~~l~~~l~r~~~~~~~~~~~~~gf~~~~~~~~~p~~~~p~~~~i~~ilP~ll~Ll~~~~~l~~p~~~~~l~ 796 (1204)
T 3a6p_A 722 SFCVYSILGVVKRTCWPTDLEEAKAGGFVVGYTSSGNPIFRNPCTEQILKLLDNLLALIRTHNTLYAPEMLAKMA 796 (1204)
T ss_dssp HHHHHHHHHHHHHCCCCSSHHHHHHTTCEEEECSSCCEEECCTTHHHHHHHHHHHHHHHHHHHHTTSHHHHTTSC
T ss_pred HHHHHHHHHHHHHhcCCCChhhhhcCCceeccCCCCCccccCchHHHHHHHhHHHHHHHHHHHHhcCcHhhhhcC
Confidence 566777775 33 444433221 1 2557788888888888888887 7899887654
No 5
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=99.96 E-value=7.7e-25 Score=278.03 Aligned_cols=687 Identities=11% Similarity=0.085 Sum_probs=425.6
Q ss_pred CCCChhhHHHHHHHHHHHHHHhhCCC-C---HHHHHHHHHhhhcCCChHHHHHHHHhcCC--chhHHHHHHHHHHHHHhh
Q 002003 21 GPADLAKLQSIMHSIEIACSSIQMHV-N---PAAAEATILGLCQSPQPYKACQFILENSQ--VANARFQAAAAIRDAAMR 94 (983)
Q Consensus 21 ~~md~~~l~~~~~~lE~~~~~ly~~~-~---r~~Ae~~L~~f~~~~~~~~~c~~ILe~S~--~~y~~f~A~~~L~~~v~~ 94 (983)
|+||+++ +++|.+..|.|. + |++|+++|.+|+++|++|..|..||.+++ +++++|||+++|++.|.
T Consensus 1 ~~m~~~~-------v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~sp~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~- 72 (980)
T 3ibv_A 1 GPMSAQD-------VENAVEAALDPSVGPIIKQQATDFIGSLRSSSTGWKICHEIFSEKTKYKPSTRLICLQTLSEKVR- 72 (980)
T ss_dssp --CHHHH-------HHHHHHHHHCTTSCHHHHHHHHHHHHHHHHSTTHHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHH-
T ss_pred CCCCHHH-------HHHHHHHHhCCCCCHHHHHHHHHHHHHHHcChhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH-
Confidence 5788555 677776667663 3 89999999999999999999999999875 79999999999999998
Q ss_pred ccCCCCHH----HHHHHHHHHHHHHHHcC-CCChhHHHHHHHHHHHHHHhhccCCCCCCchhhHHHHHHHHhcccCCc-h
Q 002003 95 EWSFLTAD----EKKSLIGFCLCFVMQHA-SSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGV-D 168 (983)
Q Consensus 95 ~W~~l~~~----~r~~lr~~ll~yl~~~~-~~l~~~V~~~l~~~la~I~K~gW~d~~~~~~~~~~~~v~~~l~~~~s~-~ 168 (983)
.++++ ++..||+++++++.+.. .+.+++|++|++++++.|.|+.|++. |++++.++.+.+.+ +++ .
T Consensus 73 ---~l~~e~~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~----Wp~~i~~l~~~~~~-~~~~~ 144 (980)
T 3ibv_A 73 ---EWNNESNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSN----WNDFFASLQGVIAA-SSQSE 144 (980)
T ss_dssp ---HCCTTTSHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTT----CTTHHHHHHHHHHH-HCCHH
T ss_pred ---hCChhhhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCccc----CchHHHHHHHHhcC-CChhH
Confidence 58999 99999999999998843 14689999999999999999999884 99999999999974 233 4
Q ss_pred hHHHHHHHHHHHHhhhCCCCCCCCCCChHHHHHH---HHHhhhhhHHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHH
Q 002003 169 TQFIGINFLESLVSEFSPSTSSAMGLPREFHEQC---RISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAA 245 (983)
Q Consensus 169 ~~~igl~iL~~lv~Efs~~~ss~~gl~~~~Hrk~---~~sf~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~ 245 (983)
.....+++|..+-+|....+ +.++.+.+.|. |..++++++..|+..++++|.+.... ....+...+
T Consensus 145 ~~~~~LriL~~i~EEv~~~~---~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~--------~~~~l~~~~ 213 (980)
T 3ibv_A 145 FSNFYLKVLLSIGDEIADSL---VLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNA--------KNYGTVGLC 213 (980)
T ss_dssp HHHHHHHHHHHHHHHHCCCC---SCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--------TCHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHhcc---cccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhcc--------CCHHHHHHH
Confidence 55678899998888876532 24455544444 88999888999999999999876421 244688999
Q ss_pred HHHHHHhcccccccCCCCCcccccccccccccccCCCCcccccccCCCccchHhhcccchHHHHHHHHHHHHhccccCCC
Q 002003 246 LRLLHQILNWDFQFDTSGRKISINVFSAGVRTETSSSKRSECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGY 325 (983)
Q Consensus 246 L~l~~~~LswdF~~~~~d~~~~~~~~~~~~~~~~~~~~s~~~~t~~~p~~Wr~~l~~~~~l~llf~ly~~lr~~~~~~~~ 325 (983)
|+++..+++|...+. +.++.+++++|++..
T Consensus 214 L~~l~s~i~wi~~~~---------------------------------------i~~~~ll~~l~~~L~----------- 243 (980)
T 3ibv_A 214 LQVYAQWVSWININL---------------------------------------IVNEPCMNLLYSFLQ----------- 243 (980)
T ss_dssp HHHHHHHTTTSCHHH---------------------------------------HHCHHHHHHHHHHTT-----------
T ss_pred HHHHHHHHhhcCHHh---------------------------------------hhcchHHHHHHHHcC-----------
Confidence 999999999976643 456678888886542
Q ss_pred CCCccchHHHHHHHHHHHhccCCccCCCChhhHHHHHHHHHHhhhhhcCChhhhHHHhhhCCChhhHHHHHHHHHHHHhh
Q 002003 326 WLDCPIAVSARKLIVQLCSLTGTVFPSDNGKMQEHHLLQLLSGILEWVDPPDVVAQAIESGKSESEMLDGCRALLSIATV 405 (983)
Q Consensus 326 ~~~~~l~~~al~cL~qLaSl~~~~f~~~~~~~r~~yl~~~l~~~~~il~~~~~~~~~~~~gl~~~~~~e~cr~L~rL~~~ 405 (983)
++++...|.+||.++.+.+.. ..++.+.+..+ ++..++.... ...-+.+-...+||++..+...
T Consensus 244 --~~~~r~~A~ecL~ei~~k~~~------~~~k~~li~~l--~L~~~~~~l~------~~~~D~d~~~~la~L~~~~ge~ 307 (980)
T 3ibv_A 244 --IEELRCAACETMTEIVNKKMK------PLEKLNLLNIL--NLNLFFSKSQ------EQSTDPNFDEHVAKLINAQGVE 307 (980)
T ss_dssp --SHHHHHHHHHHHHHHHHSCCC------HHHHHHHHHHH--HHHHHHCC-----------CCHHHHHHHHHHHHHHHHH
T ss_pred --ChHHHHHHHHHHHHHHHcCCC------hhhHHHHHHHH--hHHHHHHHHh------cccccHHHHHHHHHHHHHHHHH
Confidence 267899999999999997653 22455555443 3445554321 0011224445688888766544
Q ss_pred cChhhHHHhhhccCc---hhhHHHHHHHHHHHHHHHhhcccccCcccHHHHHHHHHHHHHhhhcccccCCCCCCChhhhh
Q 002003 406 TTPFVFDRLLKSIRP---FGTLTLLSNLMCEVVKVLMMNNTEEGTWSWEARDILLDTWTTLLVSLDSTGRNVVLPLEVRN 482 (983)
Q Consensus 406 ~~~~~l~~l~~s~~~---~~~l~~L~~Lt~~~i~~~~~~~~~~~~~~~es~~~LL~~W~~lv~~~~~~~~~~~~p~~l~~ 482 (983)
+. .+..-...... ......+..+.-.+++.... ++ .+.....+.+|..++....+.......+.....
T Consensus 308 l~--~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~---~~----deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~ 378 (980)
T 3ibv_A 308 LV--AIKSDPSELSPELKENCSFQLYNLFPYLIRYLSD---DY----DETSTAVFPFLSDLLVSLRKESSSKELSASLKE 378 (980)
T ss_dssp HH--HHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTC---SS----HHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHH
T ss_pred HH--HHccCccccchhhhhhHHHHHHHHHHHHHHHhCC---Cc----hhHHHHHHHHHHHHHHHHHhccccccccHHHHH
Confidence 31 11100000000 00011111121112222111 11 255667788899999876553322234555566
Q ss_pred hHHHHHHHHHHhhhccccccccCCCcccchhhccHHHHHHHH-HHHHHHHHHcHhhhHHHHHHHHHHHHHHHhcccCCCC
Q 002003 483 AAASLFALIVESELKVASASAMDDNGEFNYLQASISAMDERL-SSYALIARAAIDATVPLLTRLFSERFARLHQGRGMID 561 (983)
Q Consensus 483 ~~~~I~~~yi~srL~~~~~~~~~d~d~de~~e~d~~~~~eqL-~~ia~l~R~~~~~t~~lL~~l~~~~~~~l~~~~~~~~ 561 (983)
+.+++... +-.|+..++....++++|+|+ +++-..+..++ ..+-.+++..++..++.+...+...+++.... +
T Consensus 379 ~l~~Ll~~-li~k~~yp~d~~~~~~~d~ed-~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~-~--- 452 (980)
T 3ibv_A 379 FLKSLLEA-IIKKMKYDESQEWDDDPDSEE-EAEFQEMRKKLKIFQDTINSIDSSLFSSYMYSAITSSLSTAATL-S--- 452 (980)
T ss_dssp HHHHHHHH-HHHTTSCCTTCCCCCCSSSST-HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTS-C---
T ss_pred HHHHHHHH-HHHHccCCCccccccccchhH-HHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcc-c---
Confidence 77788877 556788776433222111111 22222233333 33446666778888885555555554432211 0
Q ss_pred cchhhHHHHHHHHHHHhHhccCCCCCccccchhhhhhhhhhhhhccCh-HHHHHHHHHHHHHHhcCccCcccCCCHHHHH
Q 002003 562 PTETLEELYSLLLITGHVLADEGEGEIPVVPNAIQTHFVDTIEAAKHP-VVLLCGSIIKFAEWSLDPEARASVFSPRLME 640 (983)
Q Consensus 562 ~~~~~E~L~WLv~i~G~~Lad~~~gE~~~iP~~i~~~~~~~~~~~~d~-v~~L~~~vl~l~~~~l~~~~~~~~~Sp~L~~ 640 (983)
...-++++.=-++..|+ +++...+....++ .+...-| ++.+ +.++.. ++.. ..-.|.+-.
T Consensus 453 ~~~~W~~~EaaL~~l~~-iaE~i~~~~~~~~----------~~~~~lp~l~~l---l~~ll~----s~i~-~~~hp~V~~ 513 (980)
T 3ibv_A 453 PENSWQLIEFALYETYI-FGEGLRGPDAFFN----------EVDKSPTVLSQI---LALVTT----SQVC-RHPHPLVQL 513 (980)
T ss_dssp HHHHHHHHHHHHHHHHH-TTTTCCSGGGTBC----------SSSCCBCHHHHH---HHHHHH----SSTT-TCCCHHHHH
T ss_pred CCCCHHHHHHHHHHHHH-HHhhccccccccC----------cccchhHHHHHH---HHHHHh----CCCC-CCCCHHHHH
Confidence 01124444444555554 4443221000000 0001111 2223 222222 2221 113699999
Q ss_pred HHHHHHHHHHHhhcCCccccccCCCCcCCCCCccccccchhhHHHhhhcCCCChhhHHHHHHHHHHHhccCCCCchhHHH
Q 002003 641 AIVWFLARWSQTYLMPLEEFRDSSTNLCHDTGYQHQSSTSRKALLSFFGEHNQGKPVLDIIVRISMTTLVSYPGEKDLQE 720 (983)
Q Consensus 641 a~lwFl~~~~~~Yl~~~~~~~~~~~~~~~~~~y~~~s~~~~~~L~~~fg~~~~~~~vl~~lv~ki~~nL~~w~~e~~vi~ 720 (983)
+..|.+.|+.+ |+-.+.. | + ..+|+++++ ..---..+++|..
T Consensus 514 ~~~~~l~rys~-~~~~~~~-------------~----------l----------~~~L~~ll~----~~gl~~~~~~V~~ 555 (980)
T 3ibv_A 514 LYMEILVRYAS-FFDYESA-------------A----------I----------PALIEYFVG----PRGIHNTNERVRP 555 (980)
T ss_dssp HHHHHHHHTGG-GGGTCCT-------------T----------H----------HHHHHHHTS----TTTTTCCCTTTHH
T ss_pred HHHHHHHHHHH-HHhcCch-------------h----------H----------HHHHHHHhc----cccccCCChhHHH
Confidence 99999999753 2221100 0 0 122222222 0001124567888
Q ss_pred HHHHHHHHHHhccccchhhhhcchHHHHHHHHhhcccccccc---cc-------------------hhhHHHHHHHHHHh
Q 002003 721 LTCNQLLHALVRRKNVCVHLVALGSWRELASAFANDKTLILL---NS-------------------TNQRSLAQTLVLSA 778 (983)
Q Consensus 721 ~t~~~LL~~L~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~l---~~-------------------~~~~~l~~aL~~~~ 778 (983)
.++ .+|..+++.. +..+ .|....|++... +++.. |. +.+-.+|++++.+.
T Consensus 556 ~a~-~af~~f~~~~---~~~L-~~~~~~il~~l~---~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li 627 (980)
T 3ibv_A 556 RAW-YLFYRFVKSI---KKQV-VNYTESSLAMLG---DLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLI 627 (980)
T ss_dssp HHH-HHHHHHHHHT---TTTC-SSSHHHHHHHTT---GGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHh---hHHh-hhHHHHHHHHHH---HhhcCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHH
Confidence 888 8999998863 2222 366777777753 22221 21 13556999999998
Q ss_pred hcCCC-chhhhHHHHHHHHHHHHHHHHHhCCCCcccccCchhHHHHHHHHHHHhhchhhccCCCcH--HHHHHHHHhhHH
Q 002003 779 YGMRN-SESSNQYVRDLTRHATAYLVELSGKNDLKNVSQQPDIILLVSCLLERLRGAANATEPRTQ--KAIYEMGFSVMN 855 (983)
Q Consensus 779 ~~~~d-~~~~~~~f~~~~~pl~~~~~~l~~~~~~~~~~~~~~vk~~i~~ll~~LrGia~a~~~~~~--~~lf~~i~~~l~ 855 (983)
+.... .+++.+|+..++.|+-+.+....+...- .+++.. ++...+..+.-++.+....+. ..+-+.+.+.++
T Consensus 628 ~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~----~~~~~~-~i~~~i~al~~lakgf~~~~~~~~p~~~~f~~~~~ 702 (980)
T 3ibv_A 628 SSGNLTPEEQALYCDSLINALIGKANAALSSDLS----ALENII-SVYCSLMAIGNFAKGFPARGSEEVAWLASFNKASD 702 (980)
T ss_dssp HHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC------CHHH-HHHHHHHHHHHHHHTSCSCC-CCCSHHHHHHHHHH
T ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccc----CccHHH-HHHHHHHHHHHHhccCCcccCCCCcHHHHHHHHHH
Confidence 76653 4556779999999999999998764321 112222 555666666666666544321 136677888899
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhhh
Q 002003 856 PVLLLLEVYKHESAVVYLLLKFVVDWVDGQ 885 (983)
Q Consensus 856 ~l~~l~~~y~~~p~Vv~~iLkff~elv~~~ 885 (983)
.++.+++.|.+++.|...+-++|..++...
T Consensus 703 ~il~~l~~~~~~~~irea~~~~~~r~i~~l 732 (980)
T 3ibv_A 703 EIFLILDRMGFNEDIRGAVRFTSGRIINVV 732 (980)
T ss_dssp HHHHHHHHSCCSHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999998888654
No 6
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=99.96 E-value=2.6e-25 Score=286.91 Aligned_cols=638 Identities=11% Similarity=0.159 Sum_probs=395.0
Q ss_pred HHHHHHHHHhhCCCC--HHHHHHHHHhhhcCCChHHHHHHHHhcCCchhHHHHHHHHHHHHHhhccCCCCHHHHHHHHHH
Q 002003 33 HSIEIACSSIQMHVN--PAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGF 110 (983)
Q Consensus 33 ~~lE~~~~~ly~~~~--r~~Ae~~L~~f~~~~~~~~~c~~ILe~S~~~y~~f~A~~~L~~~v~~~W~~l~~~~r~~lr~~ 110 (983)
++++++++.+|.|.+ |++||+.|.+|+++|++|..|..||+++++++++|+|+.+|++.|.++|..+++++|..||++
T Consensus 16 ~~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~~p~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~ir~~ 95 (1049)
T 3m1i_C 16 ALLDQVVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHRIGIRNF 95 (1049)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSTTGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHhCchHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCccCCHHHHHHHHHH
Confidence 668999999998854 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCC-----hhHHHHHHHHHHHHHHhhccCCCCCCchhhHHHHHHHHhcccCCchhHHHHHHHHHHHHhhhC
Q 002003 111 CLCFVMQHASSP-----EGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFS 185 (983)
Q Consensus 111 ll~yl~~~~~~l-----~~~V~~~l~~~la~I~K~gW~d~~~~~~~~~~~~v~~~l~~~~s~~~~~igl~iL~~lv~Efs 185 (983)
+++++.+.+++. +++|++++++++|.|+|++|++ .|++++.++.+.++ .++.++..++.+|..+.+|..
T Consensus 96 ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~----~Wp~ll~~L~~~~~--~~~~~~~~~l~~L~~l~eev~ 169 (1049)
T 3m1i_C 96 VVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQ----NWPEFIPELIGSSS--SSVNVCENNMIVLKLLSEEVF 169 (1049)
T ss_dssp HHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTT----TCTTHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcc----cchHHHHHHHHHHc--cChHHHHHHHHHHHHHHHHHH
Confidence 999998876333 3799999999999999999996 49999999999997 466677778888888877765
Q ss_pred CCCCCCCCCChHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHhcccccccCCCCCc
Q 002003 186 PSTSSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWDFQFDTSGRK 265 (983)
Q Consensus 186 ~~~ss~~gl~~~~Hrk~~~sf~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~LswdF~~~~~d~~ 265 (983)
..+.+.++..... ..+..|++ .+..||.++.++++.. ....+...+|+++.++++|...+.
T Consensus 170 ~~~~~~~~~~r~~--~lk~~l~~-~~~~i~~~~~~~l~~~-----------~~~~~~~~aL~~l~~~l~wi~~~~----- 230 (1049)
T 3m1i_C 170 DFSAEQMTQAKAL--HLKNSMSK-EFEQIFKLCFQVLEQG-----------SSSSLIVATLESLLRYLHWIPYRY----- 230 (1049)
T ss_dssp TSCTTTSCHHHHH--HHHHHHHH-HHHHHHHHHHHHHHHC-----------CCHHHHHHHHHHHHHHTTTSCTHH-----
T ss_pred HhcchhhhhHHHH--HHHHHHHH-HHHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHHHhhCCHHH-----
Confidence 4322223333333 34578875 5999999988888641 134688899999999999987542
Q ss_pred ccccccccccccccCCCCcccccccCCCccchHhhcccchHHHHHHHHHHHHhccccCCCCCCccchHHHHHHHHHHHhc
Q 002003 266 ISINVFSAGVRTETSSSKRSECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLIVQLCSL 345 (983)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~s~~~~t~~~p~~Wr~~l~~~~~l~llf~ly~~lr~~~~~~~~~~~~~l~~~al~cL~qLaSl 345 (983)
+.++.+++++|+.+.. ++++...+++||+++.+.
T Consensus 231 ----------------------------------~~~~~ll~~l~~~~l~------------~~~~~~~a~~~L~~i~~~ 264 (1049)
T 3m1i_C 231 ----------------------------------IYETNILELLSTKFMT------------SPDTRAITLKCLTEVSNL 264 (1049)
T ss_dssp ----------------------------------HHSSSHHHHHHTHHHH------------SHHHHHHHHHHHHHHHHC
T ss_pred ----------------------------------HhhhhHHHHHHHHhCC------------CHhHHHHHHHHHHHHHhC
Confidence 3456688888876643 267899999999999998
Q ss_pred cCCccCCCChhhHHHHHHHHHHhhhh-----hcCChhhhHHHhhhCC-Chhh-HHHHHHHHHHHHhhcChhhHHHhhhcc
Q 002003 346 TGTVFPSDNGKMQEHHLLQLLSGILE-----WVDPPDVVAQAIESGK-SESE-MLDGCRALLSIATVTTPFVFDRLLKSI 418 (983)
Q Consensus 346 ~~~~f~~~~~~~r~~yl~~~l~~~~~-----il~~~~~~~~~~~~gl-~~~~-~~e~cr~L~rL~~~~~~~~l~~l~~s~ 418 (983)
+- +.... .....+..++.++.. ++++..........+- .+.+ +..+|+.+..+...+. ..+.. ..
T Consensus 265 ~~---~~~~~-~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~-~~~~~---~~ 336 (1049)
T 3m1i_C 265 KI---PQDND-LIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNR-ALLES---DE 336 (1049)
T ss_dssp CC---CTTCH-HHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHH-HHHHS---CG
T ss_pred CC---Ccchh-hHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHH-HHHcC---Ch
Confidence 52 22110 011233333333333 4443221211222221 2333 4578888877766552 22221 00
Q ss_pred CchhhHHHHHHHHHHHHHHHhhcccccCcccHHHHHHHHHHHHHhhhcccccCCCCCCChhhhhhHHHHHHHHHHhhhcc
Q 002003 419 RPFGTLTLLSNLMCEVVKVLMMNNTEEGTWSWEARDILLDTWTTLLVSLDSTGRNVVLPLEVRNAAASLFALIVESELKV 498 (983)
Q Consensus 419 ~~~~~l~~L~~Lt~~~i~~~~~~~~~~~~~~~es~~~LL~~W~~lv~~~~~~~~~~~~p~~l~~~~~~I~~~yi~srL~~ 498 (983)
...+++..+-.++..+. . .. ..+....++++|..+++.+-. ..........+..++... +-.++..
T Consensus 337 ~~~~~l~~~l~~ll~~~----~--~~----d~~v~~~~lefw~~l~~~l~~---~~~~~~~~~~~l~~Lv~~-ll~~m~~ 402 (1049)
T 3m1i_C 337 SLRELLLNAHQYLIQLS----K--IE----ERELFKTTLDYWHNLVADLFY---EPLKKHIYEEICSQLRLV-IIENMVR 402 (1049)
T ss_dssp GGHHHHHHHHHHHHHHH----T--SS----CHHHHHHHHHHHHHHHHHHHH---STTCGGGGHHHHHHHHHH-HHHTCCC
T ss_pred hhHHHHHHHHHHHHHHH----c--CC----cHHHHHHHHHHHHHHHHHHHh---chhHHHHHHHHHHHHHHH-HHHhcCC
Confidence 00112222222222211 1 11 246678899999999885310 000112233456677765 4446665
Q ss_pred ccccc-cCCCcc-----cchhhccHHHHHHHHHHHHHHHHHcHhhhHHHHHHHHHHHHHHHhcccCCCCcchhhHHHHHH
Q 002003 499 ASASA-MDDNGE-----FNYLQASISAMDERLSSYALIARAAIDATVPLLTRLFSERFARLHQGRGMIDPTETLEELYSL 572 (983)
Q Consensus 499 ~~~~~-~~d~d~-----de~~e~d~~~~~eqL~~ia~l~R~~~~~t~~lL~~l~~~~~~~l~~~~~~~~~~~~~E~L~WL 572 (983)
++... .+|++. +++++|++..+..--+++-.+++..+..+++.+.+.+.+.++ + ...+ +.+..=.
T Consensus 403 ~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~~~~l~~v~~~l~~~l~----~-~~~~----W~~~eaa 473 (1049)
T 3m1i_C 403 PEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQID----G-SEWS----WHNINTL 473 (1049)
T ss_dssp CTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHT----S-SSCC----HHHHHHH
T ss_pred CcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhC----C-CCCC----HHHHHHH
Confidence 53221 111110 011112223343333444455577788888888777765542 1 1111 3334445
Q ss_pred HHHHHhHhccCCCCCccccchhhhhhhhhhhhhccCh-HHHHHHHHHHHHHHhcCccCcccCCCHHHHHHHHHHHHHHHH
Q 002003 573 LLITGHVLADEGEGEIPVVPNAIQTHFVDTIEAAKHP-VVLLCGSIIKFAEWSLDPEARASVFSPRLMEAIVWFLARWSQ 651 (983)
Q Consensus 573 v~i~G~~Lad~~~gE~~~iP~~i~~~~~~~~~~~~d~-v~~L~~~vl~l~~~~l~~~~~~~~~Sp~L~~a~lwFl~~~~~ 651 (983)
++..|+ +++...+ . ..++ +..++..++.++... .+ . . -.|.+..+..|.++|+..
T Consensus 474 l~algs-ia~~~~~----------------~--~e~~~l~~v~~~l~~l~~~~--~~-~-~-~~~~v~~~~~~~lgry~~ 529 (1049)
T 3m1i_C 474 SWAIGS-ISGTMSE----------------D--TEKRFVVTVIKDLLDLTVKK--RG-K-D-NKAVVASDIMYVVGQYPR 529 (1049)
T ss_dssp HHHHHH-TTTSSCH----------------H--HHHHHHHHHHHHHHHHTTSS--CS-H-H-HHHHHHHHHHHHHHHCHH
T ss_pred HHHHHH-HhcccCc----------------h--hhHHHHHHHHHHHHHHHhhh--cc-c-c-chHHHHHHHHHHHHHHHH
Confidence 666665 3332210 0 0112 233444444433211 00 0 0 135566678999998652
Q ss_pred hhcCCccccccCCCCcCCCCCccccccchhhHHHhhhcCCCChhhHHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHh
Q 002003 652 TYLMPLEEFRDSSTNLCHDTGYQHQSSTSRKALLSFFGEHNQGKPVLDIIVRISMTTLVSYPGEKDLQELTCNQLLHALV 731 (983)
Q Consensus 652 ~Yl~~~~~~~~~~~~~~~~~~y~~~s~~~~~~L~~~fg~~~~~~~vl~~lv~ki~~nL~~w~~e~~vi~~t~~~LL~~L~ 731 (983)
| +.. + ...+.-++++++..+.. ..+.|...++ ..|..++
T Consensus 530 -~------------------------------~~~----~---~~~l~~vl~~ll~~l~~--~~~~V~~~A~-~al~~l~ 568 (1049)
T 3m1i_C 530 -F------------------------------LKA----H---WNFLRTVILKLFEFMHE--THEGVQDMAC-DTFIKIV 568 (1049)
T ss_dssp -H------------------------------HHH----C---HHHHHHHHHHHHHHTTS--SCHHHHHHHH-HHHHHHH
T ss_pred -H------------------------------HHh----H---HHHHHHHHHHHHHHhcC--CCHHHHHHHH-HHHHHHH
Confidence 2 111 0 12233344444444432 3578988999 8999998
Q ss_pred ccccchhhhhc------chHHHHHHHHhhcccccccccchhhHHHHHHHHHHhhcCCCchhhhHHHHHHHHHHHHHHHHH
Q 002003 732 RRKNVCVHLVA------LGSWRELASAFANDKTLILLNSTNQRSLAQTLVLSAYGMRNSESSNQYVRDLTRHATAYLVEL 805 (983)
Q Consensus 732 ~~~~~~~~l~~------~~~~~~L~~~~~~~~~~~~l~~~~~~~l~~aL~~~~~~~~d~~~~~~~f~~~~~pl~~~~~~l 805 (983)
... .+.++. .|.+..|++.... -+..++...+..+|++++.+....++.+....|+..+|.|+-+++..+
T Consensus 569 ~~~--~~~l~~~~~~~~~p~~~~il~~l~~--~~~~~~~~~~~~~~eai~~ii~~~~~~~~~~~~~~~l~~~~~~~~~~~ 644 (1049)
T 3m1i_C 569 QKC--KYHFVIQQPRESEPFIQTIIRDIQK--TTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTI 644 (1049)
T ss_dssp HHH--THHHHSCCTTCSSCHHHHHHHTHHH--HHTTSCHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHH--HHHhhcccCCCCCcHHHHHHHHHHH--HHHhCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 852 123321 2667777765421 123345556688999999998877755667889999999999998887
Q ss_pred hCCCC-cccccCchhHHHHHHHHHHHhhchhhccCCC
Q 002003 806 SGKND-LKNVSQQPDIILLVSCLLERLRGAANATEPR 841 (983)
Q Consensus 806 ~~~~~-~~~~~~~~~vk~~i~~ll~~LrGia~a~~~~ 841 (983)
.+... -.....+++....++.+++++..++.+....
T Consensus 645 ~~~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~~l~~~ 681 (1049)
T 3m1i_C 645 VEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGAD 681 (1049)
T ss_dssp HHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHhhchhhhcCHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 53210 0011224556667788888888777766543
No 7
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.96 E-value=2.8e-25 Score=284.70 Aligned_cols=687 Identities=11% Similarity=0.067 Sum_probs=409.4
Q ss_pred HHHHHHHHHhhCCC--CHHHHHHHHHhhhcCCChHHHHHHHHhcCCchhHHHHHHHHHHHHHhhccCCCCHHHHHHHHHH
Q 002003 33 HSIEIACSSIQMHV--NPAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGF 110 (983)
Q Consensus 33 ~~lE~~~~~ly~~~--~r~~Ae~~L~~f~~~~~~~~~c~~ILe~S~~~y~~f~A~~~L~~~v~~~W~~l~~~~r~~lr~~ 110 (983)
++++++++.+|.|. .|++||++|.+|+++|++|..|..||+.+++++++|+|+.+|++.|.++|..+++++|..||++
T Consensus 7 ~~l~~~l~~~~~~d~~~r~~A~~~L~~~~~~p~~w~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ 86 (971)
T 2x1g_F 7 ARLEEAVVSFYRSNSQNQAITHEWLTDAEASPQAWQFSWQLMQLGKSQEVQFFGAITLHSKLMKHWHEVPPENREELKQK 86 (971)
T ss_dssp ----CTHHHHHTSTTTC----CHHHHHTTTSTHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHHHHH
Confidence 77999999999875 3999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCChhHHHHHHHHHHHHHHhhccCCCCCCchhhHHHHHHHHhcccC-----CchhHHHHHHHHHHHHhhhC
Q 002003 111 CLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIH-----GVDTQFIGINFLESLVSEFS 185 (983)
Q Consensus 111 ll~yl~~~~~~l~~~V~~~l~~~la~I~K~gW~d~~~~~~~~~~~~v~~~l~~~~-----s~~~~~igl~iL~~lv~Efs 185 (983)
|++++.+.. +.+++|+++++.+++.|+|++|+ .|++++.++.+.+++.. ++.++..++.+|..+.+|..
T Consensus 87 ll~~l~~~~-~~~~~vr~kl~~~la~i~~~~~p-----~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~ 160 (971)
T 2x1g_F 87 ILESIVRFA-GGPKIVLNRLCISLGAYIVHMLG-----EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQ 160 (971)
T ss_dssp HHHHHHHHT-TSCHHHHHHHHHHHHHHHHHTTC-----C------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHHHHHccc-----cccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHh
Confidence 999999876 45799999999999999999998 39999999999987411 46788999999999999965
Q ss_pred CCCCCCCCCChHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHhcc--cccccCCCC
Q 002003 186 PSTSSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILN--WDFQFDTSG 263 (983)
Q Consensus 186 ~~~ss~~gl~~~~Hrk~~~sf~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~Ls--wdF~~~~~d 263 (983)
..+.. ++....+..++ ..++.++.++.++|.... ..........+...+|+++..++. |...+
T Consensus 161 ~~~~~------~~r~~~~~~l~-~~~~~vl~ll~~~l~~~~----~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~---- 225 (971)
T 2x1g_F 161 VIHTS------VKRVVLRAEIA-KRVQLVIHTVERYLKLQM----NRVWDAEAYSNMNRAVKCVGTWIKNIGYTIE---- 225 (971)
T ss_dssp HCCCS------SCHHHHHHHHH-TTHHHHHHHHHHHHHHHT----TSCCCHHHHHHHHHHHHHHHHHHHHSCCCGG----
T ss_pred ccCcH------HHHHHHHHHHH-HHHHHHHHHHHHHHhccc----CCCCCccchhHHHHHHHHHHHHHhhCCcCcc----
Confidence 33211 11223344553 357777777666665321 100001123677888888877766 55332
Q ss_pred CcccccccccccccccCCCCcccccccCCCccchHhhcccchHHHHHHHH-HHHH---hccccCC-CCCCccchHHHHHH
Q 002003 264 RKISINVFSAGVRTETSSSKRSECIIVQPGPAWCDALISSGHIVWLLNLY-SALR---QKFSSEG-YWLDCPIAVSARKL 338 (983)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~s~~~~t~~~p~~Wr~~l~~~~~l~llf~ly-~~lr---~~~~~~~-~~~~~~l~~~al~c 338 (983)
..+.+++++|++- ..+. .. ..|. ...++++...|++|
T Consensus 226 -------------------------------------~~~~ll~~l~~L~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~ 267 (971)
T 2x1g_F 226 -------------------------------------GCVTITAVLLEVVHKCYWPCIHA-GDGCMTADENELAESCLKT 267 (971)
T ss_dssp -------------------------------------GHHHHHHHHHHHHHHHHSSSCC----CCCCHHHHHHHHHHHHH
T ss_pred -------------------------------------ccccHHHHHHhhhhhhccccccc-cccccCcCCcHHHHHHHHH
Confidence 1234677777620 0010 00 0000 00126788899999
Q ss_pred HHHHHhccCCccCCCChhhHHHHHHHHHHhhhhhcCChhhhHHHhhhCCC---hhhHHHHHHHHHHHHhhcChhhHHHhh
Q 002003 339 IVQLCSLTGTVFPSDNGKMQEHHLLQLLSGILEWVDPPDVVAQAIESGKS---ESEMLDGCRALLSIATVTTPFVFDRLL 415 (983)
Q Consensus 339 L~qLaSl~~~~f~~~~~~~r~~yl~~~l~~~~~il~~~~~~~~~~~~gl~---~~~~~e~cr~L~rL~~~~~~~~l~~l~ 415 (983)
++++.+.+.+ . ++.+++..++.++..+..... .+... -+ ++.++.+||++.++.+.+. ..+.+-+
T Consensus 268 l~~i~~~~~~-----~--~~~~~~~~l~~~~~~~~~~~~---~~~~~-~d~~~~~~~~~l~~l~~~~~~~~~-~~~~~~~ 335 (971)
T 2x1g_F 268 MVNIIIQPDC-----H--NYPKTAFVLIKMFLDSLSEIT---KTEWK-RENDNEDIIVHIYMLFVSSVERHS-TLLLSGI 335 (971)
T ss_dssp HHHHHHCSGG-----G--GCHHHHHHHHHHHHHHHHHHH---HHHSS-SSCSCSHHHHHHHHHHHHHHHHTH-HHHHHHH
T ss_pred HHHHHcCccc-----c--ccHHHHHHHHHHHHHhHHHHH---HHHhc-ccccchHHHHHHHHHHHHHHHHHH-HHHHHHh
Confidence 9999986421 2 356788888887776653211 11111 12 3677899999999987763 2222100
Q ss_pred -hccCchhhHHHHHHHHHHHHHHHhhcccccCcccHHHHHHHHHHHHHhhhcccccCCCCCCCh---hhhhhHHHHHHHH
Q 002003 416 -KSIRPFGTLTLLSNLMCEVVKVLMMNNTEEGTWSWEARDILLDTWTTLLVSLDSTGRNVVLPL---EVRNAAASLFALI 491 (983)
Q Consensus 416 -~s~~~~~~l~~L~~Lt~~~i~~~~~~~~~~~~~~~es~~~LL~~W~~lv~~~~~~~~~~~~p~---~l~~~~~~I~~~y 491 (983)
+. . ......+..+.-.++......+... ...+.....+++|..+++.......+...+. ....+..++....
T Consensus 336 ~~~-~-~~~~~~l~~~l~~ll~~~~~~~~~~--~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l 411 (971)
T 2x1g_F 336 TSA-D-PELSILVHRIVQEILHCTDKPGIYP--VEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRIL 411 (971)
T ss_dssp HTC-C-HHHHHHHHHHHHHHHHHHHCSSCTT--TTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHH
T ss_pred ccC-c-ccccHHHHHHHHHHHHHHcCCCCCC--cchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHH
Confidence 00 0 0001112222222222111111101 1134567889999999773321100000111 1233445555554
Q ss_pred HHhhhccccccccCCCcccchhhccH-HHHHHHHHHHHHHHHHcHhhhHHHHHHHHHHHHHHHhcccCCCCcchhhHHHH
Q 002003 492 VESELKVASASAMDDNGEFNYLQASI-SAMDERLSSYALIARAAIDATVPLLTRLFSERFARLHQGRGMIDPTETLEELY 570 (983)
Q Consensus 492 i~srL~~~~~~~~~d~d~de~~e~d~-~~~~eqL~~ia~l~R~~~~~t~~lL~~l~~~~~~~l~~~~~~~~~~~~~E~L~ 570 (983)
+ .++..++....+ ++|+++++|- .....--+.+-.+++..++..++.+.+.+.+.++.+... +.. +.+..
T Consensus 412 ~-~~~~~p~~~~~~--~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~~~~~-----~~~-w~~~e 482 (971)
T 2x1g_F 412 V-RKSEQPDEKSLA--KWSSDDLECFRCYRQDISDTFMYCYDVLNDYILEILAAMLDEAIADLQRH-----PTH-WTKLE 482 (971)
T ss_dssp H-HHTSCCCTTTTS--CSCHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHC-----TTC-CHHHH
T ss_pred H-HHhcCCCccccc--ccCHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCC-----CCc-HHHHH
Confidence 4 344443321111 1111112221 122344555666777777888888888888887766422 111 23344
Q ss_pred HHHHHHHhHhccCCCCCccccchhhhhhhhhhhhhccChHHHHHHHHHHHHHHhcCccCcccCCCHHHHHHHHHHHHHHH
Q 002003 571 SLLLITGHVLADEGEGEIPVVPNAIQTHFVDTIEAAKHPVVLLCGSIIKFAEWSLDPEARASVFSPRLMEAIVWFLARWS 650 (983)
Q Consensus 571 WLv~i~G~~Lad~~~gE~~~iP~~i~~~~~~~~~~~~d~v~~L~~~vl~l~~~~l~~~~~~~~~Sp~L~~a~lwFl~~~~ 650 (983)
=.++..|++ ++.+.. .....+..+ +++.. .+... . ..|.+..+.+|.+++++
T Consensus 483 aal~~l~~i-ae~~~~------------------~~~~~l~~l----~~~l~-~l~~~---d-~~~~vr~~a~~~l~~~~ 534 (971)
T 2x1g_F 483 ACIYSFQSV-AEHFGG------------------EEKRQIPRL----MRVLA-EIPYE---K-LNVKLLGTALETMGSYC 534 (971)
T ss_dssp HHHHHHHHT-TTC------------------------CHHHHH----HHHHH-HSCTT---T-SCHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHH-HhhcCh------------------hhhHHHHHH----HHHHH-hcCcc---c-cCHHHHHHHHHHHHHHH
Confidence 456667774 332210 001122222 22211 11211 1 26899999999999987
Q ss_pred HhhcCCccccccCCCCcCCCCCccccccchhhHHHhhhcCCCChhhHHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHH
Q 002003 651 QTYLMPLEEFRDSSTNLCHDTGYQHQSSTSRKALLSFFGEHNQGKPVLDIIVRISMTTLVSYPGEKDLQELTCNQLLHAL 730 (983)
Q Consensus 651 ~~Yl~~~~~~~~~~~~~~~~~~y~~~s~~~~~~L~~~fg~~~~~~~vl~~lv~ki~~nL~~w~~e~~vi~~t~~~LL~~L 730 (983)
. ++..+.+ --..++..+++.+ + ++|...++ ..|..+
T Consensus 535 ~-~l~~~~~---------------------------------~l~~vl~~l~~~l--~-------~~v~~~A~-~al~~l 570 (971)
T 2x1g_F 535 N-WLMENPA---------------------------------YIPPAINLLVRGL--N-------SSMSAQAT-LGLKEL 570 (971)
T ss_dssp H-HHC-------------------------------------CHHHHHHHHHHHH--H-------SSCHHHHH-HHHHHH
T ss_pred H-HHhcCHH---------------------------------HHHHHHHHHHHHh--C-------hHHHHHHH-HHHHHH
Confidence 3 3222200 1124455555443 2 56788888 899999
Q ss_pred hccccchhhhhcchHHHHHHHHhhcccccccccchhhHHHHHHHHHHhhcCCCchhhhHHHHHHHHHHHHHHHHHhCCCC
Q 002003 731 VRRKNVCVHLVALGSWRELASAFANDKTLILLNSTNQRSLAQTLVLSAYGMRNSESSNQYVRDLTRHATAYLVELSGKND 810 (983)
Q Consensus 731 ~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~l~~~~~~~l~~aL~~~~~~~~d~~~~~~~f~~~~~pl~~~~~~l~~~~~ 810 (983)
++... ..+ .|.+..|++....-..-..++.+.+..+|++++.++...+ .++...|+..++.|+.+++..+.+.+.
T Consensus 571 ~~~~~--~~l--~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~-~~~~~~~~~~ll~~l~~~l~~~~~~~~ 645 (971)
T 2x1g_F 571 CRDCQ--LQL--KPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLR-PEEIPKYLDIIVSPCFEELQAICQADS 645 (971)
T ss_dssp HHHCH--HHH--HHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSC-TTHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHH--Hhc--cccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 86521 222 2556666554321000011345678889999999987665 456688999999999999999876542
Q ss_pred cccccCchhHHHHHHHHHHHhhchhhccCCCc---------HHHHHHHHHhhHHHHHHHHHHhccchHHHHHHHHHHHHH
Q 002003 811 LKNVSQQPDIILLVSCLLERLRGAANATEPRT---------QKAIYEMGFSVMNPVLLLLEVYKHESAVVYLLLKFVVDW 881 (983)
Q Consensus 811 ~~~~~~~~~vk~~i~~ll~~LrGia~a~~~~~---------~~~lf~~i~~~l~~l~~l~~~y~~~p~Vv~~iLkff~el 881 (983)
.+++.+..++..+..|.|++.+..++. ...+..++..+++.+..+++.|.++++|+..+.+++..+
T Consensus 646 -----~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~ 720 (971)
T 2x1g_F 646 -----KTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHA 720 (971)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred -----CChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 134567778899999999988876531 234556667788888888888888999999999999987
Q ss_pred Hhhh
Q 002003 882 VDGQ 885 (983)
Q Consensus 882 v~~~ 885 (983)
+...
T Consensus 721 ~~~~ 724 (971)
T 2x1g_F 721 ITNL 724 (971)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 7654
No 8
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.65 E-value=1.1e-12 Score=165.56 Aligned_cols=151 Identities=12% Similarity=0.122 Sum_probs=132.0
Q ss_pred CChhhHHHHHHHHHHHHHHhhCCCC--HHHHHHHHHhhhcCCChHHHHHHHHh--cCCchhHHHHHHHHHHHHHhhccCC
Q 002003 23 ADLAKLQSIMHSIEIACSSIQMHVN--PAAAEATILGLCQSPQPYKACQFILE--NSQVANARFQAAAAIRDAAMREWSF 98 (983)
Q Consensus 23 md~~~l~~~~~~lE~~~~~ly~~~~--r~~Ae~~L~~f~~~~~~~~~c~~ILe--~S~~~y~~f~A~~~L~~~v~~~W~~ 98 (983)
+|.+.+ ++|.++.+..++|.+ |++||+.|.+++++|+.+..+..|+. .+.++.++++|+..|++.+.++|..
T Consensus 7 ~~~~~~----~~l~~~l~~~~s~d~~~r~~Ae~~L~~~~~~p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~ 82 (852)
T 4fdd_A 7 PDEQGL----QQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQN 82 (852)
T ss_dssp CCHHHH----HHHHHHHHHHTCSCHHHHHHHHHHHHHHTTSHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGG
T ss_pred CChhhH----HHHHHHHHHHhCcCHHHHHHHHHHHHHHHhCCCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHccCC
Confidence 444555 888888888888743 99999999999999999999999998 5788899999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhhccCCCCCCchhhHHHHHHHHhcccCCchhHHHHHHHHH
Q 002003 99 LTADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLE 178 (983)
Q Consensus 99 l~~~~r~~lr~~ll~yl~~~~~~l~~~V~~~l~~~la~I~K~gW~d~~~~~~~~~~~~v~~~l~~~~s~~~~~igl~iL~ 178 (983)
+++++|..||+.+++.+. +.++.|++++..+++.|.|.+|++ .|++++..+.+.+.+ +++..+..++..|.
T Consensus 83 ~~~~~~~~ik~~ll~~l~----~~~~~vr~~~a~~i~~ia~~~~~~----~wp~ll~~L~~~l~~-~~~~~r~~al~~L~ 153 (852)
T 4fdd_A 83 FPNGVTDFIKSECLNNIG----DSSPLIRATVGILITTIASKGELQ----NWPDLLPKLCSLLDS-EDYNTCEGAFGALQ 153 (852)
T ss_dssp CCHHHHHHHHHHHHTTTT----CSSHHHHHHHHHHHHHHHHHTTTT----TCTTHHHHHHHHHSC-SSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHHHHhcCcc----ccHHHHHHHHHHHcC-CCHHHHHHHHHHHH
Confidence 999999999999999753 345799999999999999998654 588899999999975 56778889999999
Q ss_pred HHHhhhCC
Q 002003 179 SLVSEFSP 186 (983)
Q Consensus 179 ~lv~Efs~ 186 (983)
.++.++..
T Consensus 154 ~i~~~~~~ 161 (852)
T 4fdd_A 154 KICEDSAE 161 (852)
T ss_dssp HHHHHHTT
T ss_pred HHHHHhHH
Confidence 99988754
No 9
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.57 E-value=7.9e-10 Score=141.26 Aligned_cols=143 Identities=10% Similarity=0.126 Sum_probs=124.2
Q ss_pred HHHHHHHHHhhCCCC-HHHHHHHHHhhhcCCChHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhccC------CCCHHHH
Q 002003 33 HSIEIACSSIQMHVN-PAAAEATILGLCQSPQPYKACQFILENS-QVANARFQAAAAIRDAAMREWS------FLTADEK 104 (983)
Q Consensus 33 ~~lE~~~~~ly~~~~-r~~Ae~~L~~f~~~~~~~~~c~~ILe~S-~~~y~~f~A~~~L~~~v~~~W~------~l~~~~r 104 (983)
+++.++.+...+|.+ .+ ||+.|.+++++|+.+..+..|+.+. ....++++|+..|++.|.++|. .+++++|
T Consensus 5 ~~l~~~L~~~~spd~~~r-Ae~~L~~~~~~p~~~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k 83 (960)
T 1wa5_C 5 ETVAKFLAESVIASTAKT-SERNLRQLETQDGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNV 83 (960)
T ss_dssp HHHHHHHHHTTSGGGHHH-HHHHHHHHHTSTTHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHH
T ss_pred HHHHHHHHHhcCCCHHHH-HHHHHHHhhcCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHH
Confidence 667777777777643 34 9999999999999999999998654 5679999999999999999998 8999999
Q ss_pred HHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhhccCCCCCCchhhHHHHHHHHhcccCCchhHHHHHHHHHHHHhhh
Q 002003 105 KSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEF 184 (983)
Q Consensus 105 ~~lr~~ll~yl~~~~~~l~~~V~~~l~~~la~I~K~gW~d~~~~~~~~~~~~v~~~l~~~~s~~~~~igl~iL~~lv~Ef 184 (983)
..||+.+++.+... ++.|++++..+++.|.+.+|++ .|+++++++.+.+++ +++.+..-++.+|..++.++
T Consensus 84 ~~ik~~ll~~l~~~----~~~ir~~l~~~ia~ia~~d~p~----~Wp~ll~~L~~~l~s-~~~~~~~~aL~~l~~i~~~~ 154 (960)
T 1wa5_C 84 ELIKKEIVPLMISL----PNNLQVQIGEAISSIADSDFPD----RWPTLLSDLASRLSN-DDMVTNKGVLTVAHSIFKRW 154 (960)
T ss_dssp HHHHHHHHHHHHHS----CHHHHHHHHHHHHHHHHHHSTT----TCTTHHHHHHTTCCS-SCTTHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHhC----CHHHHHHHHHHHHHHHHhhCcc----chhHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHH
Confidence 99999999999763 3899999999999999999985 499999999999975 56777888999999988776
Q ss_pred C
Q 002003 185 S 185 (983)
Q Consensus 185 s 185 (983)
.
T Consensus 155 ~ 155 (960)
T 1wa5_C 155 R 155 (960)
T ss_dssp T
T ss_pred H
Confidence 4
No 10
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.38 E-value=1.9e-08 Score=126.28 Aligned_cols=189 Identities=12% Similarity=0.085 Sum_probs=145.1
Q ss_pred HHHHHHHHh-hCCCC--HHHHHHHHHhhhcC--CChHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhc-----------c
Q 002003 34 SIEIACSSI-QMHVN--PAAAEATILGLCQS--PQPYKACQFILENS-QVANARFQAAAAIRDAAMRE-----------W 96 (983)
Q Consensus 34 ~lE~~~~~l-y~~~~--r~~Ae~~L~~f~~~--~~~~~~c~~ILe~S-~~~y~~f~A~~~L~~~v~~~-----------W 96 (983)
++.++.+.. ++|.+ |++||+.|.+++++ |+.|..+..||.++ .++.++++|+..|++.+.++ |
T Consensus 5 ~l~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~~~~~ 84 (861)
T 2bpt_A 5 EFAQLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQRW 84 (861)
T ss_dssp HHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHHH
T ss_pred HHHHHHHHcccCcCHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhccCcChHHHHHHHHhH
Confidence 467777777 77743 99999999999986 88899999999876 57899999999999998665 5
Q ss_pred CC-CCHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhhccCCCCCCchhhHHHHHHHHhcccCCchhHHHHHH
Q 002003 97 SF-LTADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGIN 175 (983)
Q Consensus 97 ~~-l~~~~r~~lr~~ll~yl~~~~~~l~~~V~~~l~~~la~I~K~gW~d~~~~~~~~~~~~v~~~l~~~~s~~~~~igl~ 175 (983)
.. +++++|..||+.+++.+.. .++.|++++.++++.|.+..|+. ..|++++..+.+.+.+..++..+..++.
T Consensus 85 ~~~l~~~~~~~ik~~ll~~l~~----~~~~vr~~~~~~l~~i~~~~~p~---~~w~~ll~~L~~~l~~~~~~~~r~~al~ 157 (861)
T 2bpt_A 85 ITQVSPEAKNQIKTNALTALVS----IEPRIANAAAQLIAAIADIELPH---GAWPELMKIMVDNTGAEQPENVKRASLL 157 (861)
T ss_dssp HHHSCHHHHHHHHHHHHHHHTC----SSHHHHHHHHHHHHHHHHHHGGG---TCCHHHHHHHHHHTSTTSCHHHHHHHHH
T ss_pred hhhCCHHHHHHHHHHHHHHHCC----CchHHHHHHHHHHHHHHHhhCcc---cccHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 75 9999999999999998643 35788999999999999999985 2589999999999975226778889999
Q ss_pred HHHHHHhhhCCCCCCCCCCChHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHhccc
Q 002003 176 FLESLVSEFSPSTSSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNW 255 (983)
Q Consensus 176 iL~~lv~Efs~~~ss~~gl~~~~Hrk~~~sf~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~Lsw 255 (983)
+|..+..++..... .+ ......|+......+.. ...+..+...+++++..++.|
T Consensus 158 ~l~~l~~~~~~~~~---------------~~-~~~~~~ll~~l~~~l~~----------~~~~~~vr~~al~~l~~~~~~ 211 (861)
T 2bpt_A 158 ALGYMCESADPQSQ---------------AL-VSSSNNILIAIVQGAQS----------TETSKAVRLAALNALADSLIF 211 (861)
T ss_dssp HHHHHHHTSSTTSS---------------TT-GGGHHHHHHHHHHHHST----------TCCCHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHcCChhhh---------------HH-HHHHHHHHHHHHHhhcC----------CCCCHHHHHHHHHHHHHHHHH
Confidence 99999998763210 12 23455555554444321 001345777888888888765
No 11
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.04 E-value=1.3e-05 Score=100.63 Aligned_cols=185 Identities=13% Similarity=0.093 Sum_probs=136.9
Q ss_pred HHHHHHHhhCCCC--HHHHHHHHHhhhcC--CChHHHHHHHHhcC-CchhHHHHHHHHHHHHHh-----------hccCC
Q 002003 35 IEIACSSIQMHVN--PAAAEATILGLCQS--PQPYKACQFILENS-QVANARFQAAAAIRDAAM-----------REWSF 98 (983)
Q Consensus 35 lE~~~~~ly~~~~--r~~Ae~~L~~f~~~--~~~~~~c~~ILe~S-~~~y~~f~A~~~L~~~v~-----------~~W~~ 98 (983)
|.++.+.+++|.+ |++|++.|.+++++ |+.+..+..+|.+. ..+.++.+|+.+|++.+. ++|..
T Consensus 3 l~~~L~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~~ 82 (876)
T 1qgr_A 3 LITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLA 82 (876)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhhhcc
Confidence 5566666777643 99999999999987 78888888888765 578999999999999874 67999
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhhccCCCCCCchhhHHHHHHHHhcccC-CchhHHHHHHHH
Q 002003 99 LTADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIH-GVDTQFIGINFL 177 (983)
Q Consensus 99 l~~~~r~~lr~~ll~yl~~~~~~l~~~V~~~l~~~la~I~K~gW~d~~~~~~~~~~~~v~~~l~~~~-s~~~~~igl~iL 177 (983)
++++.|..||+.+++.+.+. ++.+ ++++++++.|.+..++. ..|+.+++.+.+.+.+.. ++..+..++..|
T Consensus 83 l~~~~~~~ik~~ll~~l~~~----~~~~-~~~~~~l~~i~~~~~~~---~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l 154 (876)
T 1qgr_A 83 IDANARREVKNYVLHTLGTE----TYRP-SSASQCVAGIACAEIPV---NQWPELIPQLVANVTNPNSTEHMKESTLEAI 154 (876)
T ss_dssp SCHHHHHHHHHHHHHHTTTC----CSSS-CHHHHHHHHHHHHHGGG---TCCTTHHHHHHHHHHCTTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCC----cHHH-HHHHHHHHHHHHhhCcc---cccHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 99999999999999977432 3345 89999999999998863 358889999999987522 667788899999
Q ss_pred HHHHhhhCCCCCCCCCCChHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHhccc
Q 002003 178 ESLVSEFSPSTSSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNW 255 (983)
Q Consensus 178 ~~lv~Efs~~~ss~~gl~~~~Hrk~~~sf~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~Lsw 255 (983)
..++.++.+ . .| ...+..++....+.+.. + .+...+...+++++..++.+
T Consensus 155 ~~l~~~~~~-------------~----~~-~~~~~~ll~~l~~~l~~--------~--~~~~~vr~~a~~~l~~~~~~ 204 (876)
T 1qgr_A 155 GYICQDIDP-------------E----QL-QDKSNEILTAIIQGMRK--------E--EPSNNVKLAATNALLNSLEF 204 (876)
T ss_dssp HHHHHHSCH-------------H----HH-GGGHHHHHHHHHHHHST--------T--CSCHHHHHHHHHHHHHHGGG
T ss_pred HHHHHhcCH-------------h----hH-HhHHHHHHHHHHHhhcC--------C--CCCHHHHHHHHHHHHHHHHH
Confidence 999987641 0 13 23455665554444321 0 01234566778888777654
No 12
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.93 E-value=1.3e-07 Score=109.28 Aligned_cols=186 Identities=12% Similarity=0.074 Sum_probs=141.1
Q ss_pred HHHHHHHHhhCCCC--HHHHHHHHHhhhc--CCChHHHHHHHHhcCC-chhHHHHHHHHHHHHHhhc-----------cC
Q 002003 34 SIEIACSSIQMHVN--PAAAEATILGLCQ--SPQPYKACQFILENSQ-VANARFQAAAAIRDAAMRE-----------WS 97 (983)
Q Consensus 34 ~lE~~~~~ly~~~~--r~~Ae~~L~~f~~--~~~~~~~c~~ILe~S~-~~y~~f~A~~~L~~~v~~~-----------W~ 97 (983)
+|.++.+.+++|.+ |++||+.|.++++ .|+.+..+..||.+++ .+.++.+|+..|++.+.++ |.
T Consensus 2 ~l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~ 81 (462)
T 1ibr_B 2 ELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWL 81 (462)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhh
Confidence 35667777887743 9999999999998 4888888888998764 7899999999999999776 68
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhhccCCCCCCchhhHHHHHHHHhcccC-CchhHHHHHHH
Q 002003 98 FLTADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIH-GVDTQFIGINF 176 (983)
Q Consensus 98 ~l~~~~r~~lr~~ll~yl~~~~~~l~~~V~~~l~~~la~I~K~gW~d~~~~~~~~~~~~v~~~l~~~~-s~~~~~igl~i 176 (983)
.++.++|..||+.+++.+.. .++.| ++++.+++.|.+..|++ ..|++++..+.+.+.+.. ++..+..++.+
T Consensus 82 ~l~~~~~~~ik~~ll~~l~~----~~~~v-~~~~~~i~~ia~~~~~~---~~w~~ll~~L~~~l~~~~~~~~~r~~al~~ 153 (462)
T 1ibr_B 82 AIDANARREVKNYVLQTLGT----ETYRP-SSASQCVAGIACAEIPV---NQWPELIPQLVANVTNPNSTEHMKESTLEA 153 (462)
T ss_dssp TSCHHHHHHHHHHHHHHTTC----CCSSS-CSHHHHHHHHHHHHGGG---TCCTTHHHHHHHHHHCTTCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhCC----CCchh-hHHHHHHHHHHHHhccc---cccHHHHHHHHHHhccCCCCHHHHHHHHHH
Confidence 89999999999999997644 23456 88999999999999875 258889999999997522 67788899999
Q ss_pred HHHHHhhhCCCCCCCCCCChHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHhccc
Q 002003 177 LESLVSEFSPSTSSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNW 255 (983)
Q Consensus 177 L~~lv~Efs~~~ss~~gl~~~~Hrk~~~sf~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~Lsw 255 (983)
|..++.++... .+ ...+..++......|+. + .+...+-..+++++.+++.+
T Consensus 154 l~~l~~~~~~~-----------------~~-~~~~~~ll~~l~~~l~~--------~--~~~~~vr~~a~~~l~~~~~~ 204 (462)
T 1ibr_B 154 IGYICQDIDPE-----------------QL-QDKSNEILTAIIQGMRK--------E--EPSNNVKLAATNALLNSLEF 204 (462)
T ss_dssp HHHHHHHSCGG-----------------GT-GGGHHHHHHHHHHHHST--------T--CCCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHhCCch-----------------hh-HhHHHHHHHHHHHHhCC--------C--CCCHHHHHHHHHHHHHHHHH
Confidence 99999887421 02 23345565555544431 0 01345667788888887643
No 13
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=79.51 E-value=16 Score=47.21 Aligned_cols=145 Identities=9% Similarity=0.027 Sum_probs=98.5
Q ss_pred HHHHHHHHHhhCCCC--HHHHHHHHHhhhcCC------C----hHHHHHHHHhcCCchhHHHHHHHHHHHHHhhccCCCC
Q 002003 33 HSIEIACSSIQMHVN--PAAAEATILGLCQSP------Q----PYKACQFILENSQVANARFQAAAAIRDAAMREWSFLT 100 (983)
Q Consensus 33 ~~lE~~~~~ly~~~~--r~~Ae~~L~~f~~~~------~----~~~~c~~ILe~S~~~y~~f~A~~~L~~~v~~~W~~l~ 100 (983)
.+|..+.+.+.+|.+ |.+|++-|.+.-+.+ . -.......|. ++++.++..|+.+|...+.. ++
T Consensus 6 ~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~-d~~~~vR~~A~~~L~~l~~~----~~ 80 (1230)
T 1u6g_C 6 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLE-DKNGEVQNLAVKCLGPLVSK----VK 80 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHHHTT----SC
T ss_pred hHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHh----CC
Confidence 557788888877743 899988877664433 1 1222334444 67899999999999887754 67
Q ss_pred HHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhhccCCC-----CCCchhhHHHHHHHHhcccCCchhHHHHHH
Q 002003 101 ADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDF-----TSSDKEAFFSQVHQAVLGIHGVDTQFIGIN 175 (983)
Q Consensus 101 ~~~r~~lr~~ll~yl~~~~~~l~~~V~~~l~~~la~I~K~gW~d~-----~~~~~~~~~~~v~~~l~~~~s~~~~~igl~ 175 (983)
.+.+..++..|++-+. +....||...+..+..|.+.-..+. ....|+.++..+.+.+....++..+.-++.
T Consensus 81 ~~~~~~i~~~Ll~~l~----d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~ 156 (1230)
T 1u6g_C 81 EYQVETIVDTLCTNML----SDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALD 156 (1230)
T ss_dssp HHHHHHHHHHHHHHTT----CSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc----CCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHH
Confidence 7666666666666542 3456789999999999988665431 011366677778777763245677788899
Q ss_pred HHHHHHhhhCC
Q 002003 176 FLESLVSEFSP 186 (983)
Q Consensus 176 iL~~lv~Efs~ 186 (983)
+|..++..+..
T Consensus 157 ~l~~~~~~~~~ 167 (1230)
T 1u6g_C 157 IMADMLSRQGG 167 (1230)
T ss_dssp HHHHHHHHTCS
T ss_pred HHHHHHHHhHh
Confidence 99998876644
No 14
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=66.54 E-value=78 Score=30.56 Aligned_cols=121 Identities=12% Similarity=0.065 Sum_probs=67.5
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHhhhcCCChHHHHHHHHh---cCCchhHHHHHHHHHHHHHhhccCCCCHHHHHHH--
Q 002003 33 HSIEIACSSIQMHVNPAAAEATILGLCQSPQPYKACQFILE---NSQVANARFQAAAAIRDAAMREWSFLTADEKKSL-- 107 (983)
Q Consensus 33 ~~lE~~~~~ly~~~~r~~Ae~~L~~f~~~~~~~~~c~~ILe---~S~~~y~~f~A~~~L~~~v~~~W~~l~~~~r~~l-- 107 (983)
..+|+|+......+|-...-++--..+..++....|-..|. ++.++.++++|+++|+..+.+.- ..-..++
T Consensus 18 ~~IekATs~~~~~~Dw~~~leicD~I~~~~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG----~~Fh~evas 93 (163)
T 1x5b_A 18 QDVEKATNEYNTTEDWSLIMDICDKVGSTPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCG----KIFHLEVCS 93 (163)
T ss_dssp HHHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTC----HHHHHHHTS
T ss_pred HHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhh----HHHHHHHhh
Confidence 44888888776556655555555555555544444333331 46899999999999999999853 3333222
Q ss_pred HHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhhccCCCCCC-chhhHHHHHHHHhc
Q 002003 108 IGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSS-DKEAFFSQVHQAVL 162 (983)
Q Consensus 108 r~~ll~yl~~~~~~l~~~V~~~l~~~la~I~K~gW~d~~~~-~~~~~~~~v~~~l~ 162 (983)
|.|+-+++---.+...+-|++++..++ ++|-+..+. ..-..+.++-+.++
T Consensus 94 ~~Fl~el~~l~~~~~~~~Vk~kil~li-----~~W~~~f~~~~~l~~i~~~Y~~Lk 144 (163)
T 1x5b_A 94 RDFATEVRAVIKNKAHPKVCEKLKSLM-----VEWSEEFQKDPQFSLISATIKSMK 144 (163)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHH-----HHHHHHTTTCSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHH-----HHHHHHhcCCcccHHHHHHHHHHH
Confidence 445433211111234567888877654 245332111 11235566655555
No 15
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=65.06 E-value=71 Score=31.84 Aligned_cols=136 Identities=12% Similarity=0.100 Sum_probs=80.8
Q ss_pred HHHHHHHhhCCCC--HHHHHHHHHhhhcCC----------ChHHHHHHHHhcCCchhHHHHHHHHHHHHHhhccCCCCHH
Q 002003 35 IEIACSSIQMHVN--PAAAEATILGLCQSP----------QPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTAD 102 (983)
Q Consensus 35 lE~~~~~ly~~~~--r~~Ae~~L~~f~~~~----------~~~~~c~~ILe~S~~~y~~f~A~~~L~~~v~~~W~~l~~~ 102 (983)
++.+.+.+..+.. |..|-..|..+.... ..++....+|.. .++.++..|+.+|.+.... +++
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~-----~~~ 77 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTS-TDSEVQKEAARALANIASG-----PDE 77 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTS-----CHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhC-CCHHHHHHHHHHHHHHHcC-----ChH
Confidence 4555555554421 566667777665443 345555666654 4588999999999887654 234
Q ss_pred HHHHHHH-HHHHHHHHcCCCChhHHHHHHHHHHHHHHhhccCCCCCCchh-----hHHHHHHHHhcccCCchhHHHHHHH
Q 002003 103 EKKSLIG-FCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKE-----AFFSQVHQAVLGIHGVDTQFIGINF 176 (983)
Q Consensus 103 ~r~~lr~-~ll~yl~~~~~~l~~~V~~~l~~~la~I~K~gW~d~~~~~~~-----~~~~~v~~~l~~~~s~~~~~igl~i 176 (983)
.+..+.+ -.+..+...-.+...-|+...+.++..+.... +..+. ..++.+.+++.. .++..+.-++..
T Consensus 78 ~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~-----~~~~~~~~~~~~i~~L~~~l~~-~~~~~~~~a~~~ 151 (252)
T 4hxt_A 78 AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP-----DEAIKAIVDAGGVEVLVKLLTS-TDSEVQKEAARA 151 (252)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSC-----HHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-----HHHHHHHHHCCCHHHHHHHHcC-CCHHHHHHHHHH
Confidence 4443322 23344444333445778888888888886411 11121 256667777764 456677777878
Q ss_pred HHHHHh
Q 002003 177 LESLVS 182 (983)
Q Consensus 177 L~~lv~ 182 (983)
|..+..
T Consensus 152 L~~l~~ 157 (252)
T 4hxt_A 152 LANIAS 157 (252)
T ss_dssp HHHHTT
T ss_pred HHHHHc
Confidence 877753
No 16
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=64.35 E-value=51 Score=35.48 Aligned_cols=125 Identities=13% Similarity=0.074 Sum_probs=79.6
Q ss_pred CCCCCCCCCCCCCChhhHHHHHHHHHHHHHHhhCCCCHHHHHHHHHhhhcCCChHH-HHH----HHHhcCCchhHHHHHH
Q 002003 11 GGGDDGGGGGGPADLAKLQSIMHSIEIACSSIQMHVNPAAAEATILGLCQSPQPYK-ACQ----FILENSQVANARFQAA 85 (983)
Q Consensus 11 ~~~~~~~~~~~~md~~~l~~~~~~lE~~~~~ly~~~~r~~Ae~~L~~f~~~~~~~~-~c~----~ILe~S~~~y~~f~A~ 85 (983)
-+.|++|++ .|..+.+ ..++..+.+.++...|-.+|.+-+.++.. |.... .+. ..||++ ++-.+=..+
T Consensus 150 ~~~WG~~~~--~~~~eel---kkki~~lL~EY~~~~D~~EA~~ci~EL~~-p~f~~e~V~~ai~~alE~~-~~~~re~~~ 222 (307)
T 2zu6_B 150 DSVWGSGGG--QQSVNHL---VKEIDMLLKEYLLSGDISEAEHCLKELEV-PHFHHELVYEAIIMVLEST-GESTFKMIL 222 (307)
T ss_dssp CCSSCCCST--TSCHHHH---HHHHHHHHHHHHHHCCHHHHHHHHHHHCC-GGGHHHHHHHHHHHHHTCC-SSHHHHHHH
T ss_pred hhhcCCCCC--CCCHHHH---HHHHHHHHHHHHcCCCHHHHHHHHHHcCC-CcchHHHHHHHHHHHHccC-ChHHHHHHH
Confidence 345655443 3555555 48899999999888889999999999985 33322 233 445655 334455566
Q ss_pred HHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhhccCCC
Q 002003 86 AAIRDAAMREWSFLTADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDF 145 (983)
Q Consensus 86 ~~L~~~v~~~W~~l~~~~r~~lr~~ll~yl~~~~~~l~~~V~~~l~~~la~I~K~gW~d~ 145 (983)
..|..+..+ ..++.+|-..=-.-+++.+--..- .-|.+.+.+.+.+++.++.||+..
T Consensus 223 ~LL~~L~~~--~~ls~~q~~~Gf~~vl~~l~Dl~l-DiP~A~~~la~~v~~ai~~g~l~~ 279 (307)
T 2zu6_B 223 DLLKSLWKS--STITVDQMKRGYERIYNEIPDINL-DVPHSYSVLERFVEECFQAGIISK 279 (307)
T ss_dssp HHHHHHHHH--CSSCHHHHHHHHHHHHHHHHHHHH-HCTTHHHHHHHHHHHHHHHTSSCH
T ss_pred HHHHHHHHC--CCCCHHHHHHHHHHHHHhccHhhc-ccccHHHHHHHHHHHHHHCCCCCH
Confidence 777777766 578888754322223333222210 125667778888999999999873
No 17
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=55.10 E-value=81 Score=34.67 Aligned_cols=108 Identities=12% Similarity=0.044 Sum_probs=70.6
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHhhhcCCChH-HHHH----HHHhcCCchhHHHHHHHHHHHHHhhccCCCCHHHHHH
Q 002003 32 MHSIEIACSSIQMHVNPAAAEATILGLCQSPQPY-KACQ----FILENSQVANARFQAAAAIRDAAMREWSFLTADEKKS 106 (983)
Q Consensus 32 ~~~lE~~~~~ly~~~~r~~Ae~~L~~f~~~~~~~-~~c~----~ILe~S~~~y~~f~A~~~L~~~v~~~W~~l~~~~r~~ 106 (983)
..+++.+.+.++...+.++|.+-+.++.. |... ..+. ..||+++. -.+=..+..|..+... ..++.+|-..
T Consensus 217 kkki~~lL~EY~~s~D~~EA~~ci~EL~~-p~fhhe~V~~av~~aLE~~~~-~~re~~~~LL~~L~~~--glls~~q~~~ 292 (358)
T 3eiq_C 217 VKEIDMLLKEYLLSGDISEAEHCLKELEV-PHFHHELVYEAIVMVLESTGE-SAFKMILDLLKSLWKS--STITIDQMKR 292 (358)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHCC-TTCHHHHHHHHHHHHHHCCSS-HHHHHHHHHHHHHHHT--TCSCHHHHHH
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHccC-CcchHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHC--CCCCHHHHHH
Confidence 48889999999888889999999999985 4432 2233 34576533 3444555677777766 5788887443
Q ss_pred HHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhhccCC
Q 002003 107 LIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLD 144 (983)
Q Consensus 107 lr~~ll~yl~~~~~~l~~~V~~~l~~~la~I~K~gW~d 144 (983)
=-.=+++.+--..- .-|.+...+.+.+++.++.||+.
T Consensus 293 Gf~~vl~~ldDl~l-DiP~A~~~la~~varai~~g~l~ 329 (358)
T 3eiq_C 293 GYERIYNEIPDINL-DVPHSYSVLERFVEECFQAGIIS 329 (358)
T ss_dssp HHHHHHHHHHHHHH-HCTTHHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHhccHhhc-ccccHHHHHHHHHHHHHHCCCCC
Confidence 22223333322210 12566778888999999999987
No 18
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=47.22 E-value=1.1e+02 Score=29.68 Aligned_cols=64 Identities=8% Similarity=-0.097 Sum_probs=42.6
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHhhhcCCChHHHHHHHH-h--cCCchhHHHHHHHHHHHHHhhcc
Q 002003 33 HSIEIACSSIQMHVNPAAAEATILGLCQSPQPYKACQFIL-E--NSQVANARFQAAAAIRDAAMREW 96 (983)
Q Consensus 33 ~~lE~~~~~ly~~~~r~~Ae~~L~~f~~~~~~~~~c~~IL-e--~S~~~y~~f~A~~~L~~~v~~~W 96 (983)
+.+|+|+......+|-...-++--..+..++....|-..| . ++.|+.++++|+++|+..+.+.-
T Consensus 16 ~~IekATs~~l~~~Dw~~ileicD~I~~~~~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG 82 (171)
T 1juq_A 16 SWLNKATNPSNRQEDWEYIIGFCDQINKELEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCG 82 (171)
T ss_dssp HHHHHHTCTTCSSCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSH
T ss_pred HHHHHHcCCCCCCcCHHHHHHHHHHHHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcC
Confidence 5588888776655665555555555555554444333333 1 36899999999999999998853
No 19
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=45.43 E-value=1.8e+02 Score=27.14 Aligned_cols=97 Identities=12% Similarity=-0.002 Sum_probs=55.2
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHhhhcCCChHHHHHHH----HhcCCchhHHHHHHHHHHHHHhhccCCCCHHHHHHH-
Q 002003 33 HSIEIACSSIQMHVNPAAAEATILGLCQSPQPYKACQFI----LENSQVANARFQAAAAIRDAAMREWSFLTADEKKSL- 107 (983)
Q Consensus 33 ~~lE~~~~~ly~~~~r~~Ae~~L~~f~~~~~~~~~c~~I----Le~S~~~y~~f~A~~~L~~~v~~~W~~l~~~~r~~l- 107 (983)
+.+|+|+...+..+|-...-++--..+..+..-..|-.. |. +.++.+++.|+++|+..+.+.- ..-..++
T Consensus 8 ~~iekAT~~~l~~~dw~~ileicD~I~~~~~~~k~a~rai~Krl~-~~n~~~ql~AL~LLe~~vkNcG----~~f~~eva 82 (140)
T 3ldz_A 8 QDVEKATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRSIMRRVN-HKDPHVAMQALTLLGACVSNCG----KIFHLEVC 82 (140)
T ss_dssp HHHHHHTCTTSSSCCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHSC----HHHHHHHS
T ss_pred HHHHHHcCCCCCCcCHHHHHHHHHHHHCCCcCHHHHHHHHHHHHc-CCChHHHHHHHHHHHHHHHhcC----HHHHHHHh
Confidence 446777666655555555555555555555443433333 33 5789999999999999988853 3333333
Q ss_pred -HHHHHHHHHHcCCCChhHHHHHHHHHHH
Q 002003 108 -IGFCLCFVMQHASSPEGYVQAKISSVAA 135 (983)
Q Consensus 108 -r~~ll~yl~~~~~~l~~~V~~~l~~~la 135 (983)
|.|+-+.+ ..-+..++-|++++..++-
T Consensus 83 s~~Fl~el~-~l~~~~~~~Vk~kil~li~ 110 (140)
T 3ldz_A 83 SRDFASEVS-NVLNKGHPKVCEKLKALMV 110 (140)
T ss_dssp SHHHHHHHH-HHHHHSCHHHHHHHHHHHH
T ss_pred hHHHHHHHH-HHhccCCHHHHHHHHHHHH
Confidence 44543321 1111235678887766553
No 20
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=45.24 E-value=2.1e+02 Score=27.15 Aligned_cols=99 Identities=13% Similarity=0.028 Sum_probs=60.8
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHhhhcCCChHHHHHHHH-h--cCCchhHHHHHHHHHHHHHhhccCCCCHHHHHHH--
Q 002003 33 HSIEIACSSIQMHVNPAAAEATILGLCQSPQPYKACQFIL-E--NSQVANARFQAAAAIRDAAMREWSFLTADEKKSL-- 107 (983)
Q Consensus 33 ~~lE~~~~~ly~~~~r~~Ae~~L~~f~~~~~~~~~c~~IL-e--~S~~~y~~f~A~~~L~~~v~~~W~~l~~~~r~~l-- 107 (983)
+.+|+|+...+..+|-...-++--..+..++.-..+-..| . ++.|+.++++|+++|+..+.+.- ..-..++
T Consensus 14 ~~IekATs~~l~~~dw~~ileicD~I~~~~~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG----~~fh~eias 89 (149)
T 3g2s_A 14 ARINRATNPLNKELDWASINGFCEQLNEDFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCG----KRFHDEVGK 89 (149)
T ss_dssp HHHHHHSCTTCSSCCHHHHHHHHHHGGGSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCC----HHHHHHHTS
T ss_pred HHHHHHcCCCCCCcCHHHHHHHHHHHHCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcC----HHHHHHHhh
Confidence 5588888777766676666666666666665444333222 1 37899999999999999998853 2222222
Q ss_pred HHHHHHHHHHcC-----CCChhHHHHHHHHHHH
Q 002003 108 IGFCLCFVMQHA-----SSPEGYVQAKISSVAA 135 (983)
Q Consensus 108 r~~ll~yl~~~~-----~~l~~~V~~~l~~~la 135 (983)
|.|+-+.+--.. +..+.-|++++..++-
T Consensus 90 ~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~ 122 (149)
T 3g2s_A 90 FRFLNELIKVVSPKYLGSRTSEKVKNKILELLY 122 (149)
T ss_dssp HHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccccCCCCCHHHHHHHHHHHH
Confidence 455544331111 1346778888776654
No 21
>1wiz_A DNA-binding protein SATB2; helix bundle, KIAA1034 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=44.38 E-value=21 Score=31.76 Aligned_cols=81 Identities=14% Similarity=0.172 Sum_probs=43.7
Q ss_pred CCCCCCCCCCCCCC--C-hhhHHHHHHHHHHHHHHhhCCCCHHHHHHH-------HHhhhcCC-ChHHHHHHHHhcCCch
Q 002003 10 GGGGDDGGGGGGPA--D-LAKLQSIMHSIEIACSSIQMHVNPAAAEAT-------ILGLCQSP-QPYKACQFILENSQVA 78 (983)
Q Consensus 10 ~~~~~~~~~~~~~m--d-~~~l~~~~~~lE~~~~~ly~~~~r~~Ae~~-------L~~f~~~~-~~~~~c~~ILe~S~~~ 78 (983)
|+||..|+|+.++. | -.++ ..++-.-.+.-+.+ .+--|+.+ |-++-+.| .||...+. ....
T Consensus 1 ~~~~~~~~~~~~~~~~~iTk~I---~~~Ik~~Lk~~~is-Q~~FA~~VL~rsQgtLs~lLr~P~kPW~~L~~----Gre~ 72 (101)
T 1wiz_A 1 GSSGSSGKPEPTNSSVEVSPDI---YQQVRDELKRASVS-QAVFARVAFNRTQGLLSEILRKEEDPRTASQS----LLVN 72 (101)
T ss_dssp CCCCCCCCCCCCCCSCCCCTTH---HHHHHHHHHHHTCC-HHHHHHHHHSCCHHHHHHHHHTCCCTTTCCHH----HHHH
T ss_pred CCCCCCCCCCcccchhHhhHHH---HHHHHHHHHHcCCC-HHHHHHHHHHHhhhHHHHHHcCCCCCHHHHHH----HHHH
Confidence 56777777775544 2 1222 12333322222222 24445554 44455667 47765422 3445
Q ss_pred hHHHHHHHHHHHHHhhccCCCCHHHHHHHHH
Q 002003 79 NARFQAAAAIRDAAMREWSFLTADEKKSLIG 109 (983)
Q Consensus 79 y~~f~A~~~L~~~v~~~W~~l~~~~r~~lr~ 109 (983)
|.+++ .|-.+|.++|.+|-+
T Consensus 73 f~RM~-----------nWL~l~e~eR~eIl~ 92 (101)
T 1wiz_A 73 LRAMQ-----------NFLNLPEVERDRIYQ 92 (101)
T ss_dssp HHHHH-----------HHTTSCHHHHHHHHH
T ss_pred HHHHH-----------HHhcCCHHHHHHHHH
Confidence 66655 799999999988754
No 22
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=44.15 E-value=1.1e+02 Score=29.40 Aligned_cols=98 Identities=10% Similarity=0.005 Sum_probs=57.6
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHhhhcCCChHHHHHHHH----hcCCchhHHHHHHHHHHHHHhhccCCCCHHHHHHH-
Q 002003 33 HSIEIACSSIQMHVNPAAAEATILGLCQSPQPYKACQFIL----ENSQVANARFQAAAAIRDAAMREWSFLTADEKKSL- 107 (983)
Q Consensus 33 ~~lE~~~~~ly~~~~r~~Ae~~L~~f~~~~~~~~~c~~IL----e~S~~~y~~f~A~~~L~~~v~~~W~~l~~~~r~~l- 107 (983)
+.+|+|+......+|-...-++--..+..++....|-..| .++.|+.++++|+++|+..+.+.- ..-..++
T Consensus 19 ~~IekATs~~l~~~Dw~~~leicD~I~~~~~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG----~~fh~eva 94 (157)
T 1elk_A 19 QRIEKATDGSLQSEDWALNMEICDIINETEEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCG----HRFHVLVA 94 (157)
T ss_dssp HHHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSC----HHHHHHHT
T ss_pred HHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhC----HHHHHHHh
Confidence 5688888777655664444444444455555444433333 345789999999999999999853 3333333
Q ss_pred -HHHHHHHHHHc--C-CCChhHHHHHHHHHH
Q 002003 108 -IGFCLCFVMQH--A-SSPEGYVQAKISSVA 134 (983)
Q Consensus 108 -r~~ll~yl~~~--~-~~l~~~V~~~l~~~l 134 (983)
+.|+-+++... + .+.+.-|++++..++
T Consensus 95 ~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li 125 (157)
T 1elk_A 95 SQDFVESVLVRTILPKNNPPTIVHDKVLNLI 125 (157)
T ss_dssp SHHHHHHHTHHHHSTTTCCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhccCCCCcHHHHHHHHHHH
Confidence 44555522221 1 123457877766554
No 23
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=37.02 E-value=3.1e+02 Score=26.86 Aligned_cols=146 Identities=16% Similarity=0.156 Sum_probs=80.0
Q ss_pred CCchhHHHHHHHHHHHHHhcc-ccchhhhhcchHHHHHHHHhhcccccccccchhhHHHHHHHHHHhhcCCCchhhhHHH
Q 002003 713 PGEKDLQELTCNQLLHALVRR-KNVCVHLVALGSWRELASAFANDKTLILLNSTNQRSLAQTLVLSAYGMRNSESSNQYV 791 (983)
Q Consensus 713 ~~e~~vi~~t~~~LL~~L~~~-~~~~~~l~~~~~~~~L~~~~~~~~~~~~l~~~~~~~l~~aL~~~~~~~~d~~~~~~~f 791 (983)
.+++++...++ ..|..|+.. ......+.+...+..|+....+. .+.++..-..+|+.+. ..++ ...+.+
T Consensus 97 ~~~~~v~~~a~-~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~------~~~~~~~a~~~L~~l~--~~~~-~~~~~~ 166 (252)
T 4hxt_A 97 STDSEVQKEAA-RALANIASGPDEAIKAIVDAGGVEVLVKLLTST------DSEVQKEAARALANIA--SGPD-EAIKAI 166 (252)
T ss_dssp CSSHHHHHHHH-HHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS------CHHHHHHHHHHHHHHT--TSCH-HHHHHH
T ss_pred CCCHHHHHHHH-HHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC------CHHHHHHHHHHHHHHH--cCCH-HHHHHH
Confidence 36788988999 899999954 34445566666777777665322 2456666677777763 2222 221221
Q ss_pred HHHHHHHHHHHHHHhCCCCcccccCchhHHHHHHHHHHHhhchhhccCCCcHHHHHHHHHhhHHHHHHHHHHhccchHHH
Q 002003 792 RDLTRHATAYLVELSGKNDLKNVSQQPDIILLVSCLLERLRGAANATEPRTQKAIYEMGFSVMNPVLLLLEVYKHESAVV 871 (983)
Q Consensus 792 ~~~~~pl~~~~~~l~~~~~~~~~~~~~~vk~~i~~ll~~LrGia~a~~~~~~~~lf~~i~~~l~~l~~l~~~y~~~p~Vv 871 (983)
.. ...-..+..+...+ +++++......|..+. .. ++.....+.+ ...++.++.++. ..++++.
T Consensus 167 ~~--~~~i~~L~~ll~~~-------~~~v~~~a~~~L~~l~---~~-~~~~~~~l~~--~~~i~~L~~ll~--~~~~~v~ 229 (252)
T 4hxt_A 167 VD--AGGVEVLVKLLTST-------DSEVQKEAARALANIA---SG-PTSAIKAIVD--AGGVEVLQKLLT--STDSEVQ 229 (252)
T ss_dssp HH--TTHHHHHHHHTTCS-------CHHHHHHHHHHHHHHT---TS-BHHHHHHHHH--TTHHHHHHHGGG--CSCHHHH
T ss_pred HH--CcCHHHHHHHHCCC-------CHHHHHHHHHHHHHHH---cC-CHHHHHHHHH--CCCHHHHHHHHC--CCcHHHH
Confidence 11 12223333444433 3677766666655553 21 1111222222 124455555553 5677888
Q ss_pred HHHHHHHHHHHhhh
Q 002003 872 YLLLKFVVDWVDGQ 885 (983)
Q Consensus 872 ~~iLkff~elv~~~ 885 (983)
...+..+..+....
T Consensus 230 ~~a~~~L~~l~~~~ 243 (252)
T 4hxt_A 230 KEAQRALENIKSGG 243 (252)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcCC
Confidence 77777777777543
No 24
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=34.66 E-value=2.3e+02 Score=25.99 Aligned_cols=109 Identities=12% Similarity=0.035 Sum_probs=70.2
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHhhhcCCChHH-H----HHHHHhcCCchhHHHHHHHHHHHHHhhccCCCCHHHHHH
Q 002003 32 MHSIEIACSSIQMHVNPAAAEATILGLCQSPQPYK-A----CQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKS 106 (983)
Q Consensus 32 ~~~lE~~~~~ly~~~~r~~Ae~~L~~f~~~~~~~~-~----c~~ILe~S~~~y~~f~A~~~L~~~v~~~W~~l~~~~r~~ 106 (983)
..+...+.+.++...|-++|.+-+.++.. |.... . .-.-||+++ +-.+=..+..|..+... ..++.+|-..
T Consensus 7 ~kki~~ll~EY~~~~D~~Ea~~cl~eL~~-p~f~~e~V~~~i~~alE~~~-~~~~e~~~~LL~~L~~~--~~is~~q~~~ 82 (129)
T 2nsz_A 7 VKEIDMLLKEYLLSGDISEAEHCLKELEV-PHFHHELVYEAIVMVLESTG-ESAFKMILDLLKSLWKS--STITIDQMKR 82 (129)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHTC-GGGHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHT--TCSCHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhCC-CccHHHHHHHHHHHHHcCCC-hHHHHHHHHHHHHHHHC--CCcCHHHHHH
Confidence 47788889999888889999999999873 43332 2 334456663 23445556677777655 5788887543
Q ss_pred HHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhhccCCC
Q 002003 107 LIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDF 145 (983)
Q Consensus 107 lr~~ll~yl~~~~~~l~~~V~~~l~~~la~I~K~gW~d~ 145 (983)
=-.-+++.+--.. -.-|.+-+.+.+.+++.++-||+..
T Consensus 83 Gf~~v~~~l~Dl~-lDiP~a~~~l~~~v~~ai~~g~l~~ 120 (129)
T 2nsz_A 83 GYERIYNEIPDIN-LDVPHSYSVLERFVEECFQAGIISK 120 (129)
T ss_dssp HHHHHHHHHHHHH-HHSTTHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHhhChHhh-cCccchHHHHHHHHHHHHHCCCCCH
Confidence 3333333322221 0125667778888999999999883
No 25
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=34.41 E-value=3e+02 Score=25.90 Aligned_cols=97 Identities=10% Similarity=0.052 Sum_probs=52.6
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHhhhcCCChHHHHHHHHh---cCCchhHHHHHHHHHHHHHhhccCCCCHHHHHHH--H
Q 002003 34 SIEIACSSIQMHVNPAAAEATILGLCQSPQPYKACQFILE---NSQVANARFQAAAAIRDAAMREWSFLTADEKKSL--I 108 (983)
Q Consensus 34 ~lE~~~~~ly~~~~r~~Ae~~L~~f~~~~~~~~~c~~ILe---~S~~~y~~f~A~~~L~~~v~~~W~~l~~~~r~~l--r 108 (983)
.+|+|+......+|-...-++--..+..+..-..|-..|. ++.|+.++++|+++|...+.+.- ..-..++ +
T Consensus 5 ~iekATs~~l~~~dw~~~leicD~I~~~~~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG----~~fh~evas~ 80 (148)
T 1mhq_A 5 WLNKATDPSMSEQDWSAIQNFCEQVNTDPNGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCG----EKFHSEVAKF 80 (148)
T ss_dssp HHHHHHCTTCSSCCHHHHHHHHHHHHHSSHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSC----HHHHHHHTSH
T ss_pred HHHHHcCCCCCCcCHHHHHHHHHHHHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcC----HHHHHHHhhH
Confidence 3555555554444433333333333333322222221121 47899999999999999999853 3333343 5
Q ss_pred HHHHHHHHHcC-----CCChhHHHHHHHHHH
Q 002003 109 GFCLCFVMQHA-----SSPEGYVQAKISSVA 134 (983)
Q Consensus 109 ~~ll~yl~~~~-----~~l~~~V~~~l~~~l 134 (983)
.|+-+.+---. +..+.-|+.++..++
T Consensus 81 ~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li 111 (148)
T 1mhq_A 81 RFLNELIKVLSPKYLGSWATGKVKGRVIEIL 111 (148)
T ss_dssp HHHHHHHHTTCCSTTSCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHccccCCCCCCHHHHHHHHHHH
Confidence 56655432211 224677888876654
No 26
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=33.40 E-value=4.1e+02 Score=27.18 Aligned_cols=107 Identities=14% Similarity=-0.011 Sum_probs=69.1
Q ss_pred cCCchhHHHHHHHHHHHHHhhccCC-CCHHHHHHHHHHHHHHHHHcC-CCChhHHHHHHHHHHHHHHhhccCCCCCCchh
Q 002003 74 NSQVANARFQAAAAIRDAAMREWSF-LTADEKKSLIGFCLCFVMQHA-SSPEGYVQAKISSVAAQLMKRGWLDFTSSDKE 151 (983)
Q Consensus 74 ~S~~~y~~f~A~~~L~~~v~~~W~~-l~~~~r~~lr~~ll~yl~~~~-~~l~~~V~~~l~~~la~I~K~gW~d~~~~~~~ 151 (983)
..+|.-|+--|+.+|...+..--.. .....-......++..++.++ .+--+-++.....++..++...... .
T Consensus 65 ~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~------~ 138 (278)
T 4ffb_C 65 TDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI------T 138 (278)
T ss_dssp TCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS------H
T ss_pred ccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH------H
Confidence 4678889999999998877652110 111112234455667777763 2344667777667666666554322 2
Q ss_pred hHHHHHHHHhcccCCchhHHHHHHHHHHHHhhhCCC
Q 002003 152 AFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFSPS 187 (983)
Q Consensus 152 ~~~~~v~~~l~~~~s~~~~~igl~iL~~lv~Efs~~ 187 (983)
.+++.+...+.. .++....-.+.+|..++.+|+..
T Consensus 139 ~~~e~l~~~l~~-Knpkv~~~~l~~l~~~l~~fg~~ 173 (278)
T 4ffb_C 139 QSVELVIPFFEK-KLPKLIAAAANCVYELMAAFGLT 173 (278)
T ss_dssp HHHHHHGGGGGC-SCHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhc-cCHHHHHHHHHHHHHHHHHhCCC
Confidence 366777777763 67888888899999999999764
No 27
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=32.51 E-value=2.8e+02 Score=31.51 Aligned_cols=100 Identities=14% Similarity=0.134 Sum_probs=65.7
Q ss_pred HHHHHHHhhCCCC--HHHHHHHHHhhh-cCCC----------hHHHHHHHHhcCCchhHHHHHHHHHHHHHhhccCCCCH
Q 002003 35 IEIACSSIQMHVN--PAAAEATILGLC-QSPQ----------PYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTA 101 (983)
Q Consensus 35 lE~~~~~ly~~~~--r~~Ae~~L~~f~-~~~~----------~~~~c~~ILe~S~~~y~~f~A~~~L~~~v~~~W~~l~~ 101 (983)
+|.+++.++++.. +.+|-+.++.+- ..++ .++..-.+|.+++++.+|+.|+.+|.+.... ++
T Consensus 59 i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~-----~~ 133 (510)
T 3ul1_B 59 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASG-----TS 133 (510)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTS-----CH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcC-----CH
Confidence 7788888887631 555666555542 2222 3556677899999999999999999998754 45
Q ss_pred HHHHHHHH-HHHHHHHHcCCCChhHHHHHHHHHHHHHHh
Q 002003 102 DEKKSLIG-FCLCFVMQHASSPEGYVQAKISSVAAQLMK 139 (983)
Q Consensus 102 ~~r~~lr~-~ll~yl~~~~~~l~~~V~~~l~~~la~I~K 139 (983)
+++..+.+ -.+..+.+.-.+...-|+.+.+.++..|.+
T Consensus 134 e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~ 172 (510)
T 3ul1_B 134 EQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAG 172 (510)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 66655543 233333333234557788888888888863
No 28
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=32.42 E-value=3.6e+02 Score=30.69 Aligned_cols=168 Identities=13% Similarity=0.182 Sum_probs=84.9
Q ss_pred CchhHHHHHHHHHHHHHhccccc-hhhhhcchHHHHHHHHhhcccccccccchhhHHHHHHHHHHhhcCCCchhhhHHH-
Q 002003 714 GEKDLQELTCNQLLHALVRRKNV-CVHLVALGSWRELASAFANDKTLILLNSTNQRSLAQTLVLSAYGMRNSESSNQYV- 791 (983)
Q Consensus 714 ~e~~vi~~t~~~LL~~L~~~~~~-~~~l~~~~~~~~L~~~~~~~~~~~~l~~~~~~~l~~aL~~~~~~~~d~~~~~~~f- 791 (983)
.++.|...++ ..|..++.+... ...++....+..|+....+. .+.++..-..+|+.++. .+.+......
T Consensus 305 ~~~~v~~~a~-~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~------~~~i~~~a~~aL~nl~~--~~~~~~~~v~~ 375 (529)
T 3tpo_A 305 TELPIVTPAL-RAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP------KTNIQKEATWTMSNITA--GRQDQIQQVVN 375 (529)
T ss_dssp SCHHHHHHHH-HHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCS------SHHHHHHHHHHHHHHHT--SCHHHHHHHHH
T ss_pred CChhHHHHHH-HHHHHHHccchHHHHHHhhcccHHHHHHHHcCC------CHHHHHHHHHHHHHHhc--ccHHHHHHHHh
Confidence 5677888888 888888776432 22344444444444433211 23456666667777632 2222211111
Q ss_pred HHHHHHHHHHHHHHhCCCCcccccCchhHHHHHHHHHHHhhchhhccCCCcHHHHHHHHHhhHHHHHHHHHHhccchHHH
Q 002003 792 RDLTRHATAYLVELSGKNDLKNVSQQPDIILLVSCLLERLRGAANATEPRTQKAIYEMGFSVMNPVLLLLEVYKHESAVV 871 (983)
Q Consensus 792 ~~~~~pl~~~~~~l~~~~~~~~~~~~~~vk~~i~~ll~~LrGia~a~~~~~~~~lf~~i~~~l~~l~~l~~~y~~~p~Vv 871 (983)
..++.||-. +...+ +.+++......|.-+ +..........+.+ ...+++++.++. ..+++|+
T Consensus 376 ~g~i~~Lv~----lL~~~-------~~~v~~~A~~aL~nl---~~~~~~~~~~~l~~--~g~i~~L~~LL~--~~d~~i~ 437 (529)
T 3tpo_A 376 HGLVPFLVG----VLSKA-------DFKTQKAAAWAITNY---TSGGTVEQIVYLVH--CGIIEPLMNLLS--AKDTKII 437 (529)
T ss_dssp TTHHHHHHH----HHHSS-------CHHHHHHHHHHHHHH---HHHSCHHHHHHHHH--TTCHHHHHHGGG--CSCHHHH
T ss_pred cCcHHHHHH----HhcCC-------CHHHHHHHHHHHHHH---HcCCCHHHHHHHHH--CcCHHHHHHHhc--CCCHHHH
Confidence 123333333 33332 345666555554443 22222221111211 124666666654 5688888
Q ss_pred HHHHHHHHHHHhh---------------------hccccCccchHHHHHHHHHHHHHH
Q 002003 872 YLLLKFVVDWVDG---------------------QISYLEVQETNIVIDFCTRLLQLY 908 (983)
Q Consensus 872 ~~iLkff~elv~~---------------------~~~~l~~~~~~~Lf~~~~~li~~Y 908 (983)
..+|..+..+.+. ++..|...+-..+|+.+.++|+.|
T Consensus 438 ~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~y 495 (529)
T 3tpo_A 438 QVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKY 495 (529)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 8888777666531 122344444556777777888777
No 29
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=30.75 E-value=2.7e+02 Score=26.40 Aligned_cols=109 Identities=12% Similarity=0.028 Sum_probs=71.7
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHhhhcCCChHH-H----HHHHHhcCCchhHHHHHHHHHHHHHhhccCCCCHHHHHH
Q 002003 32 MHSIEIACSSIQMHVNPAAAEATILGLCQSPQPYK-A----CQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKS 106 (983)
Q Consensus 32 ~~~lE~~~~~ly~~~~r~~Ae~~L~~f~~~~~~~~-~----c~~ILe~S~~~y~~f~A~~~L~~~v~~~W~~l~~~~r~~ 106 (983)
..++..+.+.++...|-.+|.+-+.++.. |.... . .-.-||++ +.-.+=..+..|..+... ..++.+|-..
T Consensus 9 ~kki~~lL~EY~~~~D~~EA~~cl~EL~~-p~f~~e~V~~~i~~alE~~-~~~~re~~~~LL~~L~~~--~~is~~q~~~ 84 (152)
T 2ion_A 9 VKEIDMLLKEYLLSGDISEAEHCLKELEV-PHFHHELVYEAIVMVLEST-GESAFKMILDLLKSLWKS--STITIDQMKR 84 (152)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHTC-GGGHHHHHHHHHHHHHHCC-SSHHHHHHHHHHHHHHHT--TCSCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhCC-CcchHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHC--CCcCHHHHHH
Confidence 47888899999888889999999999974 43332 2 33455765 344555566777777665 5788887543
Q ss_pred HHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhhccCCC
Q 002003 107 LIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDF 145 (983)
Q Consensus 107 lr~~ll~yl~~~~~~l~~~V~~~l~~~la~I~K~gW~d~ 145 (983)
=-.-+++.+--.. -.-|.+-+.+.+.+++.+.-||+..
T Consensus 85 Gf~~vl~~ldDl~-lDiP~A~~~la~~v~~ai~~g~l~~ 122 (152)
T 2ion_A 85 GYERIYNEIPDIN-LDVPHSYSVLERFVEECFQAGIISK 122 (152)
T ss_dssp HHHHHHHHHHHHH-HHSTTHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHhChHhc-cCccchHHHHHHHHHHHHHCCCCCH
Confidence 3333333332221 0125667778888999999999873
No 30
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=30.50 E-value=5e+02 Score=27.26 Aligned_cols=144 Identities=14% Similarity=0.133 Sum_probs=86.1
Q ss_pred CCchhHHHHHHHHHHHHHhccccch-hhhhcchHHHHHHHHhhcccccccccchhhHHHHHHHHHHhhcCCCchhhhHHH
Q 002003 713 PGEKDLQELTCNQLLHALVRRKNVC-VHLVALGSWRELASAFANDKTLILLNSTNQRSLAQTLVLSAYGMRNSESSNQYV 791 (983)
Q Consensus 713 ~~e~~vi~~t~~~LL~~L~~~~~~~-~~l~~~~~~~~L~~~~~~~~~~~~l~~~~~~~l~~aL~~~~~~~~d~~~~~~~f 791 (983)
+++++|...++ ..|..++.+.+.+ ..+++...+..|+....+.. ++.+++.-..||+.+.. .++ ...+.|
T Consensus 93 s~~~~vr~~Aa-~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~-----~~~v~~~A~~ALsnl~~--~~~-~~~~~~ 163 (296)
T 1xqr_A 93 AGAAGLRWRAA-QLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDA-----CDTVRVKALFAISCLVR--EQE-AGLLQF 163 (296)
T ss_dssp CSSHHHHHHHH-HHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCS-----CHHHHHHHHHHHHHHHT--TCH-HHHHHH
T ss_pred CCCHHHHHHHH-HHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCC-----CHHHHHHHHHHHHHHHc--CCc-HHHHHH
Confidence 36788888999 8999999875544 45777777777776654221 24567777777777632 222 122223
Q ss_pred H--HHHHHHHHHHHHHhCCCCcccccCchhHHHHHHHHHHHhhchhhccCCCcHHHHHHHHHhhHHHHHHHHHHhccchH
Q 002003 792 R--DLTRHATAYLVELSGKNDLKNVSQQPDIILLVSCLLERLRGAANATEPRTQKAIYEMGFSVMNPVLLLLEVYKHESA 869 (983)
Q Consensus 792 ~--~~~~pl~~~~~~l~~~~~~~~~~~~~~vk~~i~~ll~~LrGia~a~~~~~~~~lf~~i~~~l~~l~~l~~~y~~~p~ 869 (983)
. ..+.+|... .+.+ ++.++.....++..+.. . .+.....+.+. .+++.++.++. ..+++
T Consensus 164 ~~~ggi~~L~~l----L~~~-------d~~v~~~A~~aLs~L~~---~-~~~~~~~vv~~--g~i~~Lv~LL~--~~d~~ 224 (296)
T 1xqr_A 164 LRLDGFSVLMRA----MQQQ-------VQKLKVKSAFLLQNLLV---G-HPEHKGTLCSM--GMVQQLVALVR--TEHSP 224 (296)
T ss_dssp HHTTHHHHHHHH----HHSS-------CHHHHHHHHHHHHHHHH---H-CGGGHHHHHHT--THHHHHHHHHT--SCCST
T ss_pred HHCCCHHHHHHH----HcCC-------CHHHHHHHHHHHHHHHh---C-ChHHHHHHHHc--CCHHHHHHHHc--CCChh
Confidence 2 233344333 3333 45677666666666532 2 22222233321 35566666654 56899
Q ss_pred HHHHHHHHHHHHHhh
Q 002003 870 VVYLLLKFVVDWVDG 884 (983)
Q Consensus 870 Vv~~iLkff~elv~~ 884 (983)
|....+..+..++..
T Consensus 225 v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 225 FHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999999976
No 31
>4g4s_P Proteasome assembly chaperone 2; alpha beta, NTN-hydrolase, peptide binding, hydrolase-chaper complex; HET: LDZ; 2.49A {Saccharomyces cerevisiae}
Probab=30.13 E-value=38 Score=35.72 Aligned_cols=27 Identities=15% Similarity=0.154 Sum_probs=24.0
Q ss_pred ccccCCCccchHhhcccchHHHHHHHH
Q 002003 287 CIIVQPGPAWCDALISSGHIVWLLNLY 313 (983)
Q Consensus 287 ~~t~~~p~~Wr~~l~~~~~l~llf~ly 313 (983)
....++|.||+-++-++...++|.++|
T Consensus 242 ~~~w~~P~SW~~lfG~~~~~~~f~~~~ 268 (269)
T 4g4s_P 242 IVKFVRPISWQGAYGMADARDKFVDLY 268 (269)
T ss_dssp -CCCCCBGGGGGTTCSSCHHHHHHHHH
T ss_pred cCCccCCCccccccCCCCCchHHHhhc
Confidence 346899999999999999999999998
No 32
>4fdd_B RNA-binding protein FUS; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens}
Probab=29.52 E-value=22 Score=23.61 Aligned_cols=15 Identities=60% Similarity=1.001 Sum_probs=10.9
Q ss_pred CCCCCCCCCCCCCCh
Q 002003 11 GGGDDGGGGGGPADL 25 (983)
Q Consensus 11 ~~~~~~~~~~~~md~ 25 (983)
|||+.+|.+.+.||.
T Consensus 2 gg~drgG~gpgKM~~ 16 (29)
T 4fdd_B 2 GGGDRGGFGPGKMDS 16 (29)
T ss_pred CccccCCcCCccccc
Confidence 566777777788884
No 33
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=29.43 E-value=7.9e+02 Score=30.56 Aligned_cols=103 Identities=6% Similarity=-0.056 Sum_probs=64.1
Q ss_pred hHHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHhccccchhhhhcchHHHHHHHHhhcccccccccchhhHHHHHHHH
Q 002003 696 PVLDIIVRISMTTLVSYPGEKDLQELTCNQLLHALVRRKNVCVHLVALGSWRELASAFANDKTLILLNSTNQRSLAQTLV 775 (983)
Q Consensus 696 ~vl~~lv~ki~~nL~~w~~e~~vi~~t~~~LL~~L~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~l~~~~~~~l~~aL~ 775 (983)
.++.-+.+.+...|..|++.+.|.++++ ..|.-++..-.. .. .|.+..++...... + ...-...|...++
T Consensus 695 ~~f~~~~~~il~~l~~~~~~~~irea~~-~~~~r~i~~lg~-~~---~p~lp~~i~~ll~~--~---~~~e~~~fL~l~~ 764 (980)
T 3ibv_A 695 ASFNKASDEIFLILDRMGFNEDIRGAVR-FTSGRIINVVGP-DM---LPKVPQLISILLNS--I---DMNELVDVLSFIS 764 (980)
T ss_dssp HHHHHHHHHHHHHHHHSCCSHHHHHHHH-HHHHHHTTTTHH-HH---TTTHHHHHHHHHHH--C---CTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHH-HHHHHHHHHccH-hH---HHHHHHHHHHHHhc--C---CHHHHHHHHHHHH
Confidence 3455566667778889999999999999 888888775322 11 34444444443211 1 1122344555555
Q ss_pred HHhhcCCCchhhhHHHHHHHHHHHHHHHHHhCCCC
Q 002003 776 LSAYGMRNSESSNQYVRDLTRHATAYLVELSGKND 810 (983)
Q Consensus 776 ~~~~~~~d~~~~~~~f~~~~~pl~~~~~~l~~~~~ 810 (983)
.+...+.++ -.+.+.+++.|+.++.-.+.+.++
T Consensus 765 qli~~f~~~--~~~~l~~ll~~l~~~if~~l~~~~ 797 (980)
T 3ibv_A 765 QLIHIYKDN--MMEITNRMLPTLLMRIFSSLSAAP 797 (980)
T ss_dssp HHHHHTTTT--SHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcCCC
Confidence 555555553 456789999999998888877653
No 34
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=29.33 E-value=3.4e+02 Score=33.40 Aligned_cols=169 Identities=14% Similarity=0.110 Sum_probs=86.7
Q ss_pred hHHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHhccccchhhhhcchH-HHHHHHHhhcccccccccchhhHHHHHHH
Q 002003 696 PVLDIIVRISMTTLVSYPGEKDLQELTCNQLLHALVRRKNVCVHLVALGS-WRELASAFANDKTLILLNSTNQRSLAQTL 774 (983)
Q Consensus 696 ~vl~~lv~ki~~nL~~w~~e~~vi~~t~~~LL~~L~~~~~~~~~l~~~~~-~~~L~~~~~~~~~~~~l~~~~~~~l~~aL 774 (983)
.+.+-++..+...|..|..+.++.+.++ .++..++...... ..--+|. ...++..+... + .+ .--.+..++
T Consensus 679 ~~~~~~~~~~~~~l~~~~~~~~v~e~~~-~~l~~~~~~~~~~-~~~~l~~~~~~l~~~~~~~-~---~~--~~l~l~~~l 750 (963)
T 2x19_B 679 VVLQQVFQLIQKVLSKWLNDAQVVEAVC-AIFEKSVKTLLDD-FAPMVPQLCEMLGRMYSTI-P---QA--SALDLTRQL 750 (963)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHH-HHHHHHHHHSSST-TGGGHHHHHHHHHHHHHHS-C---CH--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCchHHHHHHH-HHHHHHHHhhccc-ccccHHHHHHHHHHHHHcC-C---cc--HHHHHHHHH
Confidence 3556666666666777888889999999 8999887653311 1000232 33333333210 0 11 011123333
Q ss_pred HHHhhcCCCchhhhHHHHHHHHHHHHHHHHHhCCCCcccccCchhHHHHHHHHHHHhhchhhccCCCcHHHHHHHHHhhH
Q 002003 775 VLSAYGMRNSESSNQYVRDLTRHATAYLVELSGKNDLKNVSQQPDIILLVSCLLERLRGAANATEPRTQKAIYEMGFSVM 854 (983)
Q Consensus 775 ~~~~~~~~d~~~~~~~f~~~~~pl~~~~~~l~~~~~~~~~~~~~~vk~~i~~ll~~LrGia~a~~~~~~~~lf~~i~~~l 854 (983)
+.. +.. + +.-..++.+++..+-...-.+.+. .....++++.....++.++---+...--. ... .+..++
T Consensus 751 i~~-f~~-~-~~~~~~~~~~l~~~~~~~l~~~~~----~~~~~pd~~~~~f~ll~~~~~~~~~~~~~-~~~---~~~~i~ 819 (963)
T 2x19_B 751 VHI-FAH-E-PAHFPPIEALFLLVTSVTLTLFQQ----GPRDHPDIVDSFMQLLAQALKRKPDLFLC-ERL---DVKAVF 819 (963)
T ss_dssp HHH-HTT-C-TTTCHHHHHHHHHHHHHHHHHHHH----CTTTCHHHHHHHHHHHHHHHHHCGGGGGC-TTS---CHHHHH
T ss_pred HHH-hCC-C-cchHHHHHHHHHHHHHHHHHHHhh----CcccCchHHHHHHHHHHHHHHhCcHHHcC-Ccc---cHHHHH
Confidence 331 011 1 112235555666555554444331 11235888887777777663211111000 000 123344
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHhhh
Q 002003 855 NPVLLLLEVYKHESAVVYLLLKFVVDWVDGQ 885 (983)
Q Consensus 855 ~~l~~l~~~y~~~p~Vv~~iLkff~elv~~~ 885 (983)
+.++..+. +.+++++...++|+.+++.+.
T Consensus 820 ~~~~~~l~--~~~~~~~~~~l~~l~~l~~~~ 848 (963)
T 2x19_B 820 QCAVLALK--FPEAPTVKASCGFFTELLPRC 848 (963)
T ss_dssp HHHHHHTT--CSCHHHHHHHHHHHHHHGGGT
T ss_pred HHHHHHcC--CCCHHHHHHHHHHHHHHHhcC
Confidence 44444443 689999999999999999753
No 35
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=28.78 E-value=3.3e+02 Score=33.63 Aligned_cols=167 Identities=12% Similarity=0.057 Sum_probs=84.1
Q ss_pred hHHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHhccccc--hhhhhcchH-HHHHHHHhhcccccccccchhhHHHHH
Q 002003 696 PVLDIIVRISMTTLVSYPGEKDLQELTCNQLLHALVRRKNV--CVHLVALGS-WRELASAFANDKTLILLNSTNQRSLAQ 772 (983)
Q Consensus 696 ~vl~~lv~ki~~nL~~w~~e~~vi~~t~~~LL~~L~~~~~~--~~~l~~~~~-~~~L~~~~~~~~~~~~l~~~~~~~l~~ 772 (983)
.+++.++..+...+..|..+++|++.++ .++..++..... ..+ +|. +..|+..+.+ . + . ..+..
T Consensus 687 ~~~~~i~~~l~~~l~~~~~~~~v~e~~~-~~~~~~~~~~~~~~~p~---l~~~~~~l~~~~~~-~-----~--~-~~~l~ 753 (971)
T 2x1g_F 687 LVMQRTMPIFKRIAEMWVEEIDVLEAAC-SAMKHAITNLRSSFQPM---LQDLCLFIVASFQT-R-----C--C-APTLE 753 (971)
T ss_dssp HHHHTTHHHHHHHHHHTTTCHHHHHHHH-HHHHHHHHHHHC--CTH---HHHHHHHHHHHCC--------C--C-HHHHH
T ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHH-HHHHHHHHhhhhhcccc---HHHHHHHHHHHHhc-C-----C--c-hHHHH
Confidence 3444455555555556777889999999 899988775321 111 232 3333333211 0 1 1 22334
Q ss_pred HHHHHhhcCCCchhhhHHHHHHHHHHHHHHHHHhCCCCcccccCchhHHHHHHHHHHHhhchhhccCCCcHHHHH--HH-
Q 002003 773 TLVLSAYGMRNSESSNQYVRDLTRHATAYLVELSGKNDLKNVSQQPDIILLVSCLLERLRGAANATEPRTQKAIY--EM- 849 (983)
Q Consensus 773 aL~~~~~~~~d~~~~~~~f~~~~~pl~~~~~~l~~~~~~~~~~~~~~vk~~i~~ll~~LrGia~a~~~~~~~~lf--~~- 849 (983)
.++.+.......+.-...+.+++.++...+-.+.+...-...-+.||+++...+++.++-- .+.. .++ ..
T Consensus 754 l~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~---~~p~----~~~~s~~~ 826 (971)
T 2x1g_F 754 ISKTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIK---KIPQ----VLEDKTLA 826 (971)
T ss_dssp HHHHHHTTCCC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHH---SSGG----GGGCTTSC
T ss_pred HHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHHHHHHH---hCcH----HHcCCccc
Confidence 4444433333322223457777888777766655543000112467888777666655421 1110 111 11
Q ss_pred HHhhHHHHHHHHHHhccchHHHHHHHHHHHHHHhh
Q 002003 850 GFSVMNPVLLLLEVYKHESAVVYLLLKFVVDWVDG 884 (983)
Q Consensus 850 i~~~l~~l~~l~~~y~~~p~Vv~~iLkff~elv~~ 884 (983)
+..+++..+..+. .++++++...++|+..++..
T Consensus 827 l~~i~~~~~~~l~--~~~~~~~~s~~~fl~~~i~~ 859 (971)
T 2x1g_F 827 YDRLVFYAQRGMT--LPESGAIRNSIQFLTHFVMQ 859 (971)
T ss_dssp HHHHHHHHHHHHT--SSCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHHhc
Confidence 2223333333333 57788888888888887765
No 36
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=27.11 E-value=2.7e+02 Score=30.38 Aligned_cols=139 Identities=11% Similarity=0.020 Sum_probs=85.3
Q ss_pred HHHHHHHhhCCCC--HHHHHHHHHhhh---cCC---------ChHHHHHHHHhcCCchhHHHHHHHHHHHHHhhccCCCC
Q 002003 35 IEIACSSIQMHVN--PAAAEATILGLC---QSP---------QPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLT 100 (983)
Q Consensus 35 lE~~~~~ly~~~~--r~~Ae~~L~~f~---~~~---------~~~~~c~~ILe~S~~~y~~f~A~~~L~~~v~~~W~~l~ 100 (983)
++.+++.+..+.. |..|-..|..+- .++ ..++....+|....++.++..|+.+|.+.....
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~----- 96 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGN----- 96 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSC-----
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-----
Confidence 6677777765521 677777776652 222 445566667777668999999999999987531
Q ss_pred HHHHHH-HHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhhccCCCCCCchh-----hHHHHHHHHhcccCCchhHHHHH
Q 002003 101 ADEKKS-LIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKE-----AFFSQVHQAVLGIHGVDTQFIGI 174 (983)
Q Consensus 101 ~~~r~~-lr~~ll~yl~~~~~~l~~~V~~~l~~~la~I~K~gW~d~~~~~~~-----~~~~~v~~~l~~~~s~~~~~igl 174 (983)
.+.+.. +..-++..+.+.-.+..+-|+...+.++..|...+- ..+. ..+..+.+++....+...+..++
T Consensus 97 ~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~-----~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~ 171 (450)
T 2jdq_A 97 SLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDST-----MCRDYVLDCNILPPLLQLFSKQNRLTMTRNAV 171 (450)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCH-----HHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCH-----HHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHH
Confidence 222222 222344444444334467788888888888875321 1122 24556677776324566777788
Q ss_pred HHHHHHHhh
Q 002003 175 NFLESLVSE 183 (983)
Q Consensus 175 ~iL~~lv~E 183 (983)
..|..+...
T Consensus 172 ~~L~~l~~~ 180 (450)
T 2jdq_A 172 WALSNLCRG 180 (450)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHhCC
Confidence 888887753
No 37
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=26.56 E-value=4.2e+02 Score=25.19 Aligned_cols=152 Identities=12% Similarity=0.031 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHhhCCCC---HHHHHHHHHhhhcCC----------ChHHHHHHHHhcC
Q 002003 9 NGGGGDDGGGGGGPADLAKLQSIMHSIEIACSSIQMHVN---PAAAEATILGLCQSP----------QPYKACQFILENS 75 (983)
Q Consensus 9 ~~~~~~~~~~~~~~md~~~l~~~~~~lE~~~~~ly~~~~---r~~Ae~~L~~f~~~~----------~~~~~c~~ILe~S 75 (983)
+|-+++.++++ .-.....+...++ |..|-..|..+.... ..++....+|..+
T Consensus 2 ~~~~~~~~~~~---------------~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~ 66 (210)
T 4db6_A 2 RGSHHHHHHGS---------------ELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSP 66 (210)
T ss_dssp --------------------------CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS
T ss_pred CCccccccccc---------------hhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCC
Q ss_pred CchhHHHHHHHHHHHHHhhccCCCCHHHHHHHHHH-HHHHHHHcCCCChhHHHHHHHHHHHHHHhhccCCCCCCchhhHH
Q 002003 76 QVANARFQAAAAIRDAAMREWSFLTADEKKSLIGF-CLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFF 154 (983)
Q Consensus 76 ~~~y~~f~A~~~L~~~v~~~W~~l~~~~r~~lr~~-ll~yl~~~~~~l~~~V~~~l~~~la~I~K~gW~d~~~~~~~~~~ 154 (983)
++.++-.|+.+|.+.... +++.+..+.+. .+..+...-.+...-|+...+.++..|....--....-.....+
T Consensus 67 -~~~v~~~a~~~L~~l~~~-----~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i 140 (210)
T 4db6_A 67 -NEQILQEALWALSNIASG-----GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGAL 140 (210)
T ss_dssp -CHHHHHHHHHHHHHHTTS-----CHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHH
T ss_pred -CHHHHHHHHHHHHHHhcC-----CcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcH
Q ss_pred HHHHHHhcccCCchhHHHHHHHHHHHHh
Q 002003 155 SQVHQAVLGIHGVDTQFIGINFLESLVS 182 (983)
Q Consensus 155 ~~v~~~l~~~~s~~~~~igl~iL~~lv~ 182 (983)
+.+.++++. +++..+..++..|..+..
T Consensus 141 ~~L~~ll~~-~~~~v~~~a~~aL~~l~~ 167 (210)
T 4db6_A 141 PALVQLLSS-PNEQILQEALWALSNIAS 167 (210)
T ss_dssp HHHHHHTTC-SCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcC-CCHHHHHHHHHHHHHHHc
No 38
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=25.17 E-value=5e+02 Score=27.82 Aligned_cols=108 Identities=10% Similarity=-0.004 Sum_probs=65.8
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHhhhcCCChHHHHHHHH----hcCCchhHHHHHHHHHHHHHhhccCCCCHHHHHHH
Q 002003 32 MHSIEIACSSIQMHVNPAAAEATILGLCQSPQPYKACQFIL----ENSQVANARFQAAAAIRDAAMREWSFLTADEKKSL 107 (983)
Q Consensus 32 ~~~lE~~~~~ly~~~~r~~Ae~~L~~f~~~~~~~~~c~~IL----e~S~~~y~~f~A~~~L~~~v~~~W~~l~~~~r~~l 107 (983)
....+.+.+.++...|-.+|.+-+.++....--...+..++ +++ +-.+=.++..|..+... ..++.++-..=
T Consensus 11 ~k~~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~--~~~re~~~~Ll~~L~~~--~~is~~~~~~G 86 (339)
T 1ug3_A 11 EKKSKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERS--AIAREHMGQLLHQLLCA--GHLSTAQYYQG 86 (339)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTC--HHHHHHHHHHHHHHHHT--TSSCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHHHHC--CCCCHHHHHHH
Confidence 47788888888877788888888777763222222344443 443 34455556666666655 56777764433
Q ss_pred HHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhhccCC
Q 002003 108 IGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLD 144 (983)
Q Consensus 108 r~~ll~yl~~~~~~l~~~V~~~l~~~la~I~K~gW~d 144 (983)
-.-+++.+--.. -.-|.....+.+.+++.+.-||+.
T Consensus 87 f~~~~~~l~Dl~-lDiP~a~~~La~~v~~~i~~g~l~ 122 (339)
T 1ug3_A 87 LYEILELAEDME-IDIPHVWLYLAELVTPILQEGGVP 122 (339)
T ss_dssp HHHHHHHHHHHT-TTCTTHHHHHHHHHGGGGSTTSCC
T ss_pred HHHHHhhChHhh-cCccchHHHHHHHHHHHHHCCCCC
Confidence 333333333333 123667778888888888888877
No 39
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=24.88 E-value=7.7e+02 Score=27.61 Aligned_cols=153 Identities=10% Similarity=0.068 Sum_probs=79.8
Q ss_pred HHHHHhccCCCCchhHHHHHHHHHHHHHhcccc-chhhhhcchHHHHHHHHhhcccccccccchhhHHHHHHHHHHhhcC
Q 002003 703 RISMTTLVSYPGEKDLQELTCNQLLHALVRRKN-VCVHLVALGSWRELASAFANDKTLILLNSTNQRSLAQTLVLSAYGM 781 (983)
Q Consensus 703 ~ki~~nL~~w~~e~~vi~~t~~~LL~~L~~~~~-~~~~l~~~~~~~~L~~~~~~~~~~~~l~~~~~~~l~~aL~~~~~~~ 781 (983)
..+...|. ..+++|...++ ..|..++.+.. ....++....+..|+...... .+.++..-..+|+.++.
T Consensus 302 ~~Lv~lL~--~~~~~v~~~a~-~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~------~~~vr~~A~~aL~~l~~-- 370 (530)
T 1wa5_B 302 KRLVELLS--HESTLVQTPAL-RAVGNIVTGNDLQTQVVINAGVLPALRLLLSSP------KENIKKEACWTISNITA-- 370 (530)
T ss_dssp HHHHHGGG--CSCHHHHHHHH-HHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS------CHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHC--CCChhhHHHHH-HHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCC------CHHHHHHHHHHHHHHHc--
Confidence 33344444 35677888888 89999887643 223444455555665554322 24556666667777632
Q ss_pred CCchhhhHHH-HHHHHHHHHHHHHHhCCCCcccccCchhHHHHHHHHHHHhhchhhccCC--CcHHHHHHHHHhhHHHHH
Q 002003 782 RNSESSNQYV-RDLTRHATAYLVELSGKNDLKNVSQQPDIILLVSCLLERLRGAANATEP--RTQKAIYEMGFSVMNPVL 858 (983)
Q Consensus 782 ~d~~~~~~~f-~~~~~pl~~~~~~l~~~~~~~~~~~~~~vk~~i~~ll~~LrGia~a~~~--~~~~~lf~~i~~~l~~l~ 858 (983)
.+.+.....+ ..++.+|-..+. . .+++++......|..+ +....+ .....+.+ ...++.++
T Consensus 371 ~~~~~~~~~~~~~~l~~L~~lL~----~-------~~~~v~~~a~~aL~~l---~~~~~~~~~~~~~l~~--~~~l~~L~ 434 (530)
T 1wa5_B 371 GNTEQIQAVIDANLIPPLVKLLE----V-------AEYKTKKEACWAISNA---SSGGLQRPDIIRYLVS--QGCIKPLC 434 (530)
T ss_dssp SCHHHHHHHHHTTCHHHHHHHHH----H-------SCHHHHHHHHHHHHHH---HHHTTTCTHHHHHHHH--TTCHHHHH
T ss_pred CCHHHHHHHHHCCCHHHHHHHHh----c-------CCHHHHHHHHHHHHHH---HhcCCCcHHHHHHHHH--CCCHHHHH
Confidence 2222211111 123444444332 1 2356776555555544 332222 11122222 12556666
Q ss_pred HHHHHhccchHHHHHHHHHHHHHHhh
Q 002003 859 LLLEVYKHESAVVYLLLKFVVDWVDG 884 (983)
Q Consensus 859 ~l~~~y~~~p~Vv~~iLkff~elv~~ 884 (983)
.++. ..+|+|....+..+..++..
T Consensus 435 ~ll~--~~~~~v~~~al~aL~~l~~~ 458 (530)
T 1wa5_B 435 DLLE--IADNRIIEVTLDALENILKM 458 (530)
T ss_dssp HHTT--TCCHHHHHHHHHHHHHHHHH
T ss_pred HHHh--CCCHHHHHHHHHHHHHHHHh
Confidence 6654 45888888888888877753
No 40
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=23.60 E-value=4.7e+02 Score=25.66 Aligned_cols=152 Identities=14% Similarity=0.083 Sum_probs=80.2
Q ss_pred HHHHHHhccCCCCchhHHHHHHHHHHHHHhccccch-hhhhcchHHHHHHHHhhcccccccccchhhHHHHHHHHHHhhc
Q 002003 702 VRISMTTLVSYPGEKDLQELTCNQLLHALVRRKNVC-VHLVALGSWRELASAFANDKTLILLNSTNQRSLAQTLVLSAYG 780 (983)
Q Consensus 702 v~ki~~nL~~w~~e~~vi~~t~~~LL~~L~~~~~~~-~~l~~~~~~~~L~~~~~~~~~~~~l~~~~~~~l~~aL~~~~~~ 780 (983)
+..+..-|+. +++++...++ ..|..|+.+.... ..+++...+..|+....+. .+.++..-..+|+.+.
T Consensus 98 i~~L~~lL~~--~~~~v~~~a~-~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~------~~~v~~~a~~~L~~l~-- 166 (252)
T 4db8_A 98 LPALVQLLSS--PNEQILQEAL-WALSNIASGGNEQIQAVIDAGALPALVQLLSSP------NEQILQEALWALSNIA-- 166 (252)
T ss_dssp HHHHHHGGGC--SCHHHHHHHH-HHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCS------CHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHcC--CCHHHHHHHH-HHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCC------CHHHHHHHHHHHHHHH--
Confidence 3444444544 5678888898 8999999887655 6677777788888775332 3456666677777763
Q ss_pred CCCchhhhHHHHHHHHHHHHHHHHHhCCCCcccccCchhHHHHHHHHHHHhhchhhccCCCcHHHHHHHHHhhHHHHHHH
Q 002003 781 MRNSESSNQYVRDLTRHATAYLVELSGKNDLKNVSQQPDIILLVSCLLERLRGAANATEPRTQKAIYEMGFSVMNPVLLL 860 (983)
Q Consensus 781 ~~d~~~~~~~f~~~~~pl~~~~~~l~~~~~~~~~~~~~~vk~~i~~ll~~LrGia~a~~~~~~~~lf~~i~~~l~~l~~l 860 (983)
..++ +..+.+.. ...-..+..+...+ +++++......|..+. .. ++.....+.+- ..++.++.+
T Consensus 167 ~~~~-~~~~~~~~--~~~i~~L~~ll~~~-------~~~v~~~a~~~L~~l~---~~-~~~~~~~~~~~--g~i~~L~~l 230 (252)
T 4db8_A 167 SGGN-EQIQAVID--AGALPALVQLLSSP-------NEQILQEALWALSNIA---SG-GNEQKQAVKEA--GALEKLEQL 230 (252)
T ss_dssp TSCH-HHHHHHHH--TTCHHHHHHGGGCS-------SHHHHHHHHHHHHHHT---TS-CHHHHHHHHHT--THHHHHHTT
T ss_pred cCCh-HHHHHHHH--CCCHHHHHHHHCCC-------CHHHHHHHHHHHHHHh---cC-CHHHHHHHHHC--CcHHHHHHH
Confidence 2221 21111110 12222333444333 4677766666666553 21 11111222211 134444444
Q ss_pred HHHhccchHHHHHHHHHHHHHH
Q 002003 861 LEVYKHESAVVYLLLKFVVDWV 882 (983)
Q Consensus 861 ~~~y~~~p~Vv~~iLkff~elv 882 (983)
+. ..+|+|.......+..++
T Consensus 231 l~--~~~~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 231 QS--HENEKIQKEAQEALEKLQ 250 (252)
T ss_dssp TT--CSSSHHHHTHHHHHHTTC
T ss_pred hC--CCCHHHHHHHHHHHHHHh
Confidence 43 356666666655555443
No 41
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=22.09 E-value=3.2e+02 Score=25.84 Aligned_cols=100 Identities=9% Similarity=-0.122 Sum_probs=57.4
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHhhhcCCChHHHHHHH----HhcCCchhHHHHHHHHHHHHHhhccCCCCHHHHHHH-
Q 002003 33 HSIEIACSSIQMHVNPAAAEATILGLCQSPQPYKACQFI----LENSQVANARFQAAAAIRDAAMREWSFLTADEKKSL- 107 (983)
Q Consensus 33 ~~lE~~~~~ly~~~~r~~Ae~~L~~f~~~~~~~~~c~~I----Le~S~~~y~~f~A~~~L~~~v~~~W~~l~~~~r~~l- 107 (983)
..+|+|+...+..+|-...-++--..+..++.-..|-.. |..+.|+.++++|+++|+..+.+.- ..-..++
T Consensus 19 ~~IekATs~~l~~~Dw~~ileicD~In~~~~~pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG----~~fh~eia 94 (152)
T 3rru_A 19 HLIEKATFAGVQTEDWGQFMHICDIINTTQDGPKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCG----PSFQSLIV 94 (152)
T ss_dssp HHHHHHTCSSCCSCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSC----HHHHHHHS
T ss_pred HHHHHHcCCCCCCccHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcC----HHHHHHHH
Confidence 446777666655555444444444444444433333322 2445789999999999999998853 3333333
Q ss_pred -HHHHHHHHHHc---CCCChhHHHHHHHHHHHH
Q 002003 108 -IGFCLCFVMQH---ASSPEGYVQAKISSVAAQ 136 (983)
Q Consensus 108 -r~~ll~yl~~~---~~~l~~~V~~~l~~~la~ 136 (983)
|.|+-+.+... ....+.-|++++..++-.
T Consensus 95 sk~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~ 127 (152)
T 3rru_A 95 KKEFVKENLVKLLNPRYNLPLDIQNRILNFIKT 127 (152)
T ss_dssp SHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHH
T ss_pred hhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Confidence 56765533222 112445688888776643
No 42
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=21.82 E-value=1.1e+03 Score=28.27 Aligned_cols=131 Identities=8% Similarity=-0.028 Sum_probs=77.0
Q ss_pred HHHHHHHHHhhhcCC--C----hHHHHHHHHhcCCchhHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHcCCC
Q 002003 48 PAAAEATILGLCQSP--Q----PYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMQHASS 121 (983)
Q Consensus 48 r~~Ae~~L~~f~~~~--~----~~~~c~~ILe~S~~~y~~f~A~~~L~~~v~~~W~~l~~~~r~~lr~~ll~yl~~~~~~ 121 (983)
|+.|.+.|..+.... . -.+.+...|. +.++.++.-|+.+|....... .+.-......++..+...-.+
T Consensus 338 r~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~-~~~~~~R~aa~~alg~i~~~~-----~~~~~~~l~~~l~~l~~~l~d 411 (852)
T 4fdd_A 338 RKCSAAALDVLANVYRDELLPHILPLLKELLF-HHEWVVKESGILVLGAIAEGC-----MQGMIPYLPELIPHLIQCLSD 411 (852)
T ss_dssp HHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHTTTTT-----HHHHGGGHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhcc-----hHHHHHHHHHHHHHHHHHcCC
Confidence 666666665554321 1 2233334443 567899999988888765431 111112233455555555556
Q ss_pred ChhHHHHHHHHHHHHHHhhccCCCCCCchhhHHHHHHHHhcccCCchhHHHHHHHHHHHHhhhC
Q 002003 122 PEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFS 185 (983)
Q Consensus 122 l~~~V~~~l~~~la~I~K~gW~d~~~~~~~~~~~~v~~~l~~~~s~~~~~igl~iL~~lv~Efs 185 (983)
..+.|+...+.++.++.+..-.......-..++..+.+.+.. .++..+.-++..|..+++..+
T Consensus 412 ~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d-~~~~vr~~a~~aL~~l~~~~~ 474 (852)
T 4fdd_A 412 KKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILD-SNKRVQEAACSAFATLEEEAC 474 (852)
T ss_dssp SSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHHG
T ss_pred CCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHhh
Confidence 678999999999988875321111112233466666666653 456777788888888876554
No 43
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=20.28 E-value=4.8e+02 Score=29.30 Aligned_cols=141 Identities=11% Similarity=0.043 Sum_probs=86.5
Q ss_pred HHHHHHHHHhhCCCC--HHHHHHHHHhhhcC-C----------ChHHHHHHHHhcCCchhHHHHHHHHHHHHHhhccCCC
Q 002003 33 HSIEIACSSIQMHVN--PAAAEATILGLCQS-P----------QPYKACQFILENSQVANARFQAAAAIRDAAMREWSFL 99 (983)
Q Consensus 33 ~~lE~~~~~ly~~~~--r~~Ae~~L~~f~~~-~----------~~~~~c~~ILe~S~~~y~~f~A~~~L~~~v~~~W~~l 99 (983)
..++.+.+.+..+.. |..|-..|..+-.. + ..++....+|..++++.+++.|+.+|.+....
T Consensus 74 ~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~----- 148 (528)
T 4b8j_A 74 ESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASG----- 148 (528)
T ss_dssp -CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTS-----
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCC-----
Confidence 457778888876531 66777777766332 2 24566677888777799999999999998753
Q ss_pred CHHHHHHHHH-HHHHHHHHcCCCChhHHHHHHHHHHHHHHhhccCCCCCCchhh-----HHHHHHHHhcccCCchhHHHH
Q 002003 100 TADEKKSLIG-FCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEA-----FFSQVHQAVLGIHGVDTQFIG 173 (983)
Q Consensus 100 ~~~~r~~lr~-~ll~yl~~~~~~l~~~V~~~l~~~la~I~K~gW~d~~~~~~~~-----~~~~v~~~l~~~~s~~~~~ig 173 (983)
+++.+..+.. -.+..+...-.+...-|+...+.++..|...+ +..+.. .+..+.+++....++.....+
T Consensus 149 ~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~-----~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a 223 (528)
T 4b8j_A 149 TSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDS-----PKCRDLVLANGALLPLLAQLNEHTKLSMLRNA 223 (528)
T ss_dssp CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTC-----HHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHH
T ss_pred CHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCC-----hhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHH
Confidence 2444444332 23333333332345678888888888886421 112222 344556666433456666777
Q ss_pred HHHHHHHHhh
Q 002003 174 INFLESLVSE 183 (983)
Q Consensus 174 l~iL~~lv~E 183 (983)
+..|..+...
T Consensus 224 ~~~L~~L~~~ 233 (528)
T 4b8j_A 224 TWTLSNFCRG 233 (528)
T ss_dssp HHHHHHHHCS
T ss_pred HHHHHHHHcC
Confidence 7788777653
Done!