BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002004
(983 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FGH|A Chain A, Atp Bound Gelsolin
pdb|2FGH|B Chain B, Atp Bound Gelsolin
Length = 731
Score = 362 bits (928), Expect = e-100, Method: Compositional matrix adjust.
Identities = 245/744 (32%), Positives = 368/744 (49%), Gaps = 57/744 (7%)
Query: 10 PAFQGAGQRVGTEIWRIENFQPVPLPKSEHGKFYMGDCYIVLQTTPGKGGAYLYDIHFWI 69
P F AG+ G +IWR+E F VP+P + +G F+ GD Y++L+T + G YD+H+W+
Sbjct: 6 PEFLKAGKEPGLQIWRVEKFDLVPVPPNLYGDFFTGDAYVILKTVQLRNGILQYDLHYWL 65
Query: 70 GKDTSQDEAGTAAIKTVELDAVLGGRAVQHRELQGHESDKFLSYFKPCIIPLEGGVASGF 129
G + SQDE+G AAI TV+LD L GRAVQHRE+QG ES FL YFK + +GGVASGF
Sbjct: 66 GNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGGVASGF 125
Query: 130 RKTXXXXXXT-RLYVCKGKRVVRMKQVPFARSSLNHDDVFILDTKDKIYQFNGANSNIQE 188
+ RL KG+RVVR +VP + S N+ D FILD + IYQ+ G+ SN E
Sbjct: 126 KHVVPNEVVVQRLLQVKGRRVVRATEVPVSWESFNNGDCFILDLGNNIYQWCGSKSNRFE 185
Query: 189 RAKALEVIQFLKEKYHDGNCNVAIVDDGKLDTESDSGEFWVLFGGFAPIGKKVATEDDV- 247
R KA +V + +++ G V++ ++G E + G P + ATED V
Sbjct: 186 RLKATQVSKGIRDNERSGRAQVSVFEEGA------EPEAMLQVLGPKPTLPE-ATEDTVK 238
Query: 248 --IAETTPPKLYSIEDSQVKIV------EGELSKSMLENNKCYLLDRGSE--VFVWVGRV 297
A KLY + + +V E ++ L + C++LD G + +FVW G+
Sbjct: 239 EDAANRKLAKLYKVSNGAGPMVVSLVADENPFAQGALRSEDCFILDHGKDGKIFVWKGKQ 298
Query: 298 TQVEERKAASQAAEEFISSQNRPKSIRITRVIQGYETYAFKSNFDSWPSGSTAPGAEEGR 357
+EERKAA + A +FIS + PK +++ + +G ET F+ F +W P EG
Sbjct: 299 ANMEERKAALKTASDFISKMDYPKQTQVSVLPEGGETPLFRQFFKNWRD----PDQTEGL 354
Query: 358 GKV-----AALLKQQGVGIKGMGKSTPTNEEVPPLLEGGGKMEVWRINGSAKTSLPKEDI 412
G A +++ + ST + +G G+ ++WR+ GS K +
Sbjct: 355 GLAYLSSHIAHVERVPFDAATLHTSTAMAAQHGMDDDGTGQKQIWRVEGSNKVPVDPATY 414
Query: 413 GKFYSGDCYIVLYTYHSGDRKEDYFLCCWFGKDSIEEDQKMATRLANTMCNSLKGRPVQG 472
G+FY GD YI+LY Y G R + + W G S +++ + L + L G PVQ
Sbjct: 415 GQFYGGDSYIILYNYRHGSR-QGQIIYNWQGAQSTQDEVAASAILTAQLDEELGGTPVQS 473
Query: 473 RIFQGREPPQFVALF--QPMVVVKGGLCSGYKKSLADKGLTDETYTADSIALIRISGTSI 530
R+ QG+EP ++LF +PM+V KGG + G T S L ++ +S
Sbjct: 474 RVVQGKEPAHLMSLFGGKPMIVYKGGTSR-------EGGQT----APASTRLFQVRASSS 522
Query: 531 HNNKTEQVDAVATSLNSSECFLLQSGSTMFTWHGNQSTFEQQQLAAKVAEFLKPGVAIKH 590
+ ++ A +LNS++ F+L++ S + W G ++ ++ A ++ L+
Sbjct: 523 GATRAVEIIPKAGALNSNDAFVLKTPSAAYLWVGAGASEAEKTGAQELLRVLRAQPV--Q 580
Query: 591 AKEGTESSAFWFPLGGKQSYTSKKVSPEI------VRDPHLFTFSFNKGAFQVEEVYN-F 643
EG+E +FW LGGK +Y + SP + P LF S G F +EEV F
Sbjct: 581 VAEGSEPDSFWEALGGKATY---RTSPRLKDKKMDAHPPRLFACSNKIGRFVIEEVPGEF 637
Query: 644 SQXXXXXXXXXXXXXHAEVFVWVGQSVDSKEKQSAFEFGQNYIDMATSLEGLSPKVPLYK 703
Q +VFVWVG+ +EK A + YID T + P+
Sbjct: 638 MQEDLATDDVMLLDTWDQVFVWVGKDSQDEEKTEALTSAKRYID--TDPAHRDRRTPITV 695
Query: 704 VTEGNE-PCFCTTFFSWDPTKATV 726
V +G E P F F WD + +V
Sbjct: 696 VKQGFEPPSFVGWFLGWDDSYWSV 719
>pdb|1D0N|A Chain A, The Crystal Structure Of Calcium-Free Equine Plasma
Gelsolin.
pdb|1D0N|B Chain B, The Crystal Structure Of Calcium-Free Equine Plasma
Gelsolin
Length = 729
Score = 362 bits (928), Expect = e-100, Method: Compositional matrix adjust.
Identities = 245/744 (32%), Positives = 368/744 (49%), Gaps = 57/744 (7%)
Query: 10 PAFQGAGQRVGTEIWRIENFQPVPLPKSEHGKFYMGDCYIVLQTTPGKGGAYLYDIHFWI 69
P F AG+ G +IWR+E F VP+P + +G F+ GD Y++L+T + G YD+H+W+
Sbjct: 4 PEFLKAGKEPGLQIWRVEKFDLVPVPPNLYGDFFTGDAYVILKTVQLRNGILQYDLHYWL 63
Query: 70 GKDTSQDEAGTAAIKTVELDAVLGGRAVQHRELQGHESDKFLSYFKPCIIPLEGGVASGF 129
G + SQDE+G AAI TV+LD L GRAVQHRE+QG ES FL YFK + +GGVASGF
Sbjct: 64 GNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGGVASGF 123
Query: 130 RKTXXXXXXT-RLYVCKGKRVVRMKQVPFARSSLNHDDVFILDTKDKIYQFNGANSNIQE 188
+ RL KG+RVVR +VP + S N+ D FILD + IYQ+ G+ SN E
Sbjct: 124 KHVVPNEVVVQRLLQVKGRRVVRATEVPVSWESFNNGDCFILDLGNNIYQWCGSKSNRFE 183
Query: 189 RAKALEVIQFLKEKYHDGNCNVAIVDDGKLDTESDSGEFWVLFGGFAPIGKKVATEDDV- 247
R KA +V + +++ G V++ ++G E + G P + ATED V
Sbjct: 184 RLKATQVSKGIRDNERSGRAQVSVFEEGA------EPEAMLQVLGPKPTLPE-ATEDTVK 236
Query: 248 --IAETTPPKLYSIEDSQVKIV------EGELSKSMLENNKCYLLDRGSE--VFVWVGRV 297
A KLY + + +V E ++ L + C++LD G + +FVW G+
Sbjct: 237 EDAANRKLAKLYKVSNGAGPMVVSLVADENPFAQGALRSEDCFILDHGKDGKIFVWKGKQ 296
Query: 298 TQVEERKAASQAAEEFISSQNRPKSIRITRVIQGYETYAFKSNFDSWPSGSTAPGAEEGR 357
+EERKAA + A +FIS + PK +++ + +G ET F+ F +W P EG
Sbjct: 297 ANMEERKAALKTASDFISKMDYPKQTQVSVLPEGGETPLFRQFFKNWRD----PDQTEGL 352
Query: 358 GKV-----AALLKQQGVGIKGMGKSTPTNEEVPPLLEGGGKMEVWRINGSAKTSLPKEDI 412
G A +++ + ST + +G G+ ++WR+ GS K +
Sbjct: 353 GLAYLSSHIAHVERVPFDAATLHTSTAMAAQHGMDDDGTGQKQIWRVEGSNKVPVDPATY 412
Query: 413 GKFYSGDCYIVLYTYHSGDRKEDYFLCCWFGKDSIEEDQKMATRLANTMCNSLKGRPVQG 472
G+FY GD YI+LY Y G R + + W G S +++ + L + L G PVQ
Sbjct: 413 GQFYGGDSYIILYNYRHGSR-QGQIIYNWQGAQSTQDEVAASAILTAQLDEELGGTPVQS 471
Query: 473 RIFQGREPPQFVALF--QPMVVVKGGLCSGYKKSLADKGLTDETYTADSIALIRISGTSI 530
R+ QG+EP ++LF +PM+V KGG + G T S L ++ +S
Sbjct: 472 RVVQGKEPAHLMSLFGGKPMIVYKGGTSR-------EGGQT----APASTRLFQVRASSS 520
Query: 531 HNNKTEQVDAVATSLNSSECFLLQSGSTMFTWHGNQSTFEQQQLAAKVAEFLKPGVAIKH 590
+ ++ A +LNS++ F+L++ S + W G ++ ++ A ++ L+
Sbjct: 521 GATRAVEIIPKAGALNSNDAFVLKTPSAAYLWVGAGASEAEKTGAQELLRVLRAQPV--Q 578
Query: 591 AKEGTESSAFWFPLGGKQSYTSKKVSPEI------VRDPHLFTFSFNKGAFQVEEVYN-F 643
EG+E +FW LGGK +Y + SP + P LF S G F +EEV F
Sbjct: 579 VAEGSEPDSFWEALGGKATY---RTSPRLKDKKMDAHPPRLFACSNKIGRFVIEEVPGEF 635
Query: 644 SQXXXXXXXXXXXXXHAEVFVWVGQSVDSKEKQSAFEFGQNYIDMATSLEGLSPKVPLYK 703
Q +VFVWVG+ +EK A + YID T + P+
Sbjct: 636 MQEDLATDDVMLLDTWDQVFVWVGKDSQDEEKTEALTSAKRYID--TDPAHRDRRTPITV 693
Query: 704 VTEGNE-PCFCTTFFSWDPTKATV 726
V +G E P F F WD + +V
Sbjct: 694 VKQGFEPPSFVGWFLGWDDSYWSV 717
>pdb|3FFN|A Chain A, Crystal Structure Of Calcium-Free Human Gelsolin
pdb|3FFN|B Chain B, Crystal Structure Of Calcium-Free Human Gelsolin
Length = 782
Score = 358 bits (919), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 242/733 (33%), Positives = 367/733 (50%), Gaps = 47/733 (6%)
Query: 10 PAFQGAGQRVGTEIWRIENFQPVPLPKSEHGKFYMGDCYIVLQTTPGKGGAYLYDIHFWI 69
P F AG+ G +IWR+E F VP+P + +G F+ GD Y++L+T + G YD+H+W+
Sbjct: 57 PEFLKAGKEPGLQIWRVEKFDLVPVPTNLYGDFFTGDAYVILKTVQLRNGNLQYDLHYWL 116
Query: 70 GKDTSQDEAGTAAIKTVELDAVLGGRAVQHRELQGHESDKFLSYFKPCIIPLEGGVASGF 129
G + SQDE+G AAI TV+LD L GRAVQHRE+QG ES FL YFK + +GGVASGF
Sbjct: 117 GNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGGVASGF 176
Query: 130 RKTXXXXXXT-RLYVCKGKRVVRMKQVPFARSSLNHDDVFILDTKDKIYQFNGANSNIQE 188
+ RL+ KG+RVVR +VP + S N+ D FILD + I+Q+ G+NSN E
Sbjct: 177 KHVVPNEVVVQRLFQVKGRRVVRATEVPVSWESFNNGDCFILDLGNNIHQWCGSNSNRYE 236
Query: 189 RAKALEVIQFLKEKYHDGNCNVAIVDDGKLDTESDSGEFWVLFGGFA-PIGKKVATEDDV 247
R KA +V + +++ G V + ++G TE ++ VL A P G + ++D
Sbjct: 237 RLKATQVSKGIRDNERSGRARVHVSEEG---TEPEA-MLQVLGPKPALPAGTEDTAKEDA 292
Query: 248 IAETTPPKLYSIEDS----QVKIV--EGELSKSMLENNKCYLLDRGSE--VFVWVGRVTQ 299
A KLY + + V +V E ++ L++ C++LD G + +FVW G+
Sbjct: 293 -ANRKLAKLYKVSNGAGTMSVSLVADENPFAQGALKSEDCFILDHGKDGKIFVWKGKQAN 351
Query: 300 VEERKAASQAAEEFISSQNRPKSIRITRVIQGYETYAFKSNFDSW--PSGSTAPGAEEGR 357
EERKAA + A +FI+ + PK +++ + +G ET FK F +W P + G
Sbjct: 352 TEERKAALKTASDFITKMDYPKQTQVSVLPEGGETPLFKQFFKNWRDPDQTDGLGLSYLS 411
Query: 358 GKVAALLKQQGVGIKGMGKSTPTNEEVPPLLEGGGKMEVWRINGSAKTSLPKEDIGKFYS 417
+A +++ + ST + +G G+ ++WRI GS K + G+FY
Sbjct: 412 SHIAN-VERVPFDAATLHTSTAMAAQHGMDDDGTGQKQIWRIEGSNKVPVDPATYGQFYG 470
Query: 418 GDCYIVLYTYHSGDRKEDYFLCCWFGKDSIEEDQKMATRLANTMCNSLKGRPVQGRIFQG 477
GD YI+LY Y G R + + W G S +++ + L + L G PVQ R+ QG
Sbjct: 471 GDSYIILYNYRHGGR-QGQIIYNWQGAQSTQDEVAASAILTAQLDEELGGTPVQSRVVQG 529
Query: 478 REPPQFVALF--QPMVVVKGGLCSGYKKSLADKGLTDETYTADSIALIRISGTSIHNNKT 535
+EP ++LF +PM++ KGG + G T S L ++ S +
Sbjct: 530 KEPAHLMSLFGGKPMIIYKGGTSR-------EGGQT----APASTRLFQVRANSAGATRA 578
Query: 536 EQVDAVATSLNSSECFLLQSGSTMFTWHGNQSTFEQQQLAAKVAEFLKPGVAIKHAKEGT 595
+V A +LNS++ F+L++ S + W G ++ ++ A ++ L+ EG+
Sbjct: 579 VEVLPKAGALNSNDAFVLKTPSAAYLWVGTGASEAEKTGAQELLRVLR--AQPVQVAEGS 636
Query: 596 ESSAFWFPLGGKQSYTSKKVSPEI------VRDPHLFTFSFNKGAFQVEEVYN-FSQXXX 648
E FW LGGK +Y + SP + P LF S G F +EEV Q
Sbjct: 637 EPDGFWEALGGKAAY---RTSPRLKDKKMDAHPPRLFACSNKIGRFVIEEVPGELMQEDL 693
Query: 649 XXXXXXXXXXHAEVFVWVGQSVDSKEKQSAFEFGQNYIDMATSLEGLSPKVPLYKVTEGN 708
+VFVWVG+ +EK A + YI+ T + P+ V +G
Sbjct: 694 ATDDVMLLDTWDQVFVWVGKDSQEEEKTEALTSAKRYIE--TDPANRDRRTPITVVKQGF 751
Query: 709 E-PCFCTTFFSWD 720
E P F F WD
Sbjct: 752 EPPSFVGWFLGWD 764
>pdb|3FFK|A Chain A, Crystal Structure Of Human Gelsolin Domains G1-G3 Bound To
Actin
pdb|3FFK|D Chain D, Crystal Structure Of Human Gelsolin Domains G1-G3 Bound To
Actin
Length = 377
Score = 235 bits (600), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 133/344 (38%), Positives = 199/344 (57%), Gaps = 13/344 (3%)
Query: 10 PAFQGAGQRVGTEIWRIENFQPVPLPKSEHGKFYMGDCYIVLQTTPGKGGAYLYDIHFWI 69
P F AG+ G +IWR+E F VP+P + +G F+ GD Y++L+T + G YD+H+W+
Sbjct: 8 PEFLKAGKEPGLQIWRVEKFDLVPVPTNLYGDFFTGDAYVILKTVQLRNGNLQYDLHYWL 67
Query: 70 GKDTSQDEAGTAAIKTVELDAVLGGRAVQHRELQGHESDKFLSYFKPCIIPLEGGVASGF 129
G + SQDE+G AAI TV+LD L GRAVQHRE+QG ES FL YFK + +GGVASGF
Sbjct: 68 GNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGGVASGF 127
Query: 130 RKTXXXXXXT-RLYVCKGKRVVRMKQVPFARSSLNHDDVFILDTKDKIYQFNGANSNIQE 188
+ RL+ KG+RVVR +VP + S N+ D FILD + I+Q+ G+NSN E
Sbjct: 128 KHVVPNEVVVQRLFQVKGRRVVRATEVPVSWESFNNGDCFILDLGNNIHQWCGSNSNRYE 187
Query: 189 RAKALEVIQFLKEKYHDGNCNVAIVDDGKLDTESDSGEFWVLFGGFAPIGKKVATEDDVI 248
R KA +V + +++ G V + ++G TE ++ + P G + ++D
Sbjct: 188 RLKATQVSKGIRDNERSGRARVHVSEEG---TEPEAMLQVLGPKPALPAGTEDTAKEDA- 243
Query: 249 AETTPPKLYSIEDS----QVKIV--EGELSKSMLENNKCYLLDRGSE--VFVWVGRVTQV 300
A KLY + + V +V E ++ L++ C++LD G + +FVW G+
Sbjct: 244 ANRKLAKLYKVSNGAGTMSVSLVADENPFAQGALKSEDCFILDHGKDGKIFVWKGKQANT 303
Query: 301 EERKAASQAAEEFISSQNRPKSIRITRVIQGYETYAFKSNFDSW 344
EERKAA + A +FI+ + PK +++ + +G ET FK F +W
Sbjct: 304 EERKAALKTASDFITKMDYPKQTQVSVLPEGGETPLFKQFFKNW 347
Score = 90.1 bits (222), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 91/374 (24%), Positives = 161/374 (43%), Gaps = 36/374 (9%)
Query: 379 PTNEEVPPLLEGGGK--MEVWRINGSAKTSLPKEDIGKFYSGDCYIVLYTYHSGDRKEDY 436
P E P L+ G + +++WR+ +P G F++GD Y++L T + Y
Sbjct: 2 PMVVEHPEFLKAGKEPGLQIWRVEKFDLVPVPTNLYGDFFTGDAYVILKTVQLRNGNLQY 61
Query: 437 FLCCWFGKDSIEEDQKMATRLANTMCNSLKGRPVQGRIFQGREPPQFVALFQP-MVVVKG 495
L W G + +++ A + + L GR VQ R QG E F+ F+ + KG
Sbjct: 62 DLHYWLGNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKG 121
Query: 496 GLCSGYKKSLADKGLTDETYTADSIALIRISGTSIHNNKTEQVDAVATSLNSSECFLLQS 555
G+ SG+K + ++ + + ++R + +V S N+ +CF+L
Sbjct: 122 GVASGFKHVVPNEVVVQRLFQVKGRRVVRAT----------EVPVSWESFNNGDCFILDL 171
Query: 556 GSTMFTWHGNQSTFEQQQLAAKVAEFLK----PGVAIKH-AKEGTESSAFWFPLGGKQSY 610
G+ + W G+ S ++ A +V++ ++ G A H ++EGTE A LG K +
Sbjct: 172 GNNIHQWCGSNSNRYERLKATQVSKGIRDNERSGRARVHVSEEGTEPEAMLQVLGPKPAL 231
Query: 611 -----TSKKVSPEIVRDPHLFTFSFNKGAFQVEEVYN---FSQXXXXXXX--XXXXXXHA 660
+ K + L+ S G V V + F+Q
Sbjct: 232 PAGTEDTAKEDAANRKLAKLYKVSNGAGTMSVSLVADENPFAQGALKSEDCFILDHGKDG 291
Query: 661 EVFVWVGQSVDSKEKQSAFEFGQNYIDMATSLEGLSPKVPLYKVT-EGNE-PCFCTTFFS 718
++FVW G+ +++E+++A + ++I T ++ PK V EG E P F F +
Sbjct: 292 KIFVWKGKQANTEERKAALKTASDFI---TKMD--YPKQTQVSVLPEGGETPLFKQFFKN 346
Query: 719 W-DPTKATVQGNSF 731
W DP + G S+
Sbjct: 347 WRDPDQTDGLGLSY 360
>pdb|1RGI|G Chain G, Crystal Structure Of Gelsolin Domains G1-G3 Bound To Actin
Length = 346
Score = 234 bits (597), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 135/347 (38%), Positives = 196/347 (56%), Gaps = 19/347 (5%)
Query: 10 PAFQGAGQRVGTEIWRIENFQPVPLPKSEHGKFYMGDCYIVLQTTPGKGGAYLYDIHFWI 69
P F AG+ G +IWR+E F VP+P + +G F+ GD Y++L+T + G YD+H+W+
Sbjct: 5 PEFLKAGKEPGLQIWRVEKFDLVPVPPNLYGDFFTGDAYVILKTVQLRNGILQYDLHYWL 64
Query: 70 GKDTSQDEAGTAAIKTVELDAVLGGRAVQHRELQGHESDKFLSYFKPCIIPLEGGVASGF 129
G + SQDE+G AAI TV+LD L GRAVQHRE+QG ES FL YFK + +GGVASGF
Sbjct: 65 GNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGGVASGF 124
Query: 130 RKTXXXXXXT-RLYVCKGKRVVRMKQVPFARSSLNHDDVFILDTKDKIYQFNGANSNIQE 188
+ RL KG+RVVR +VP + S N+ D FILD + IYQ+ G+ SN E
Sbjct: 125 KHVVPNEVVVQRLLQVKGRRVVRATEVPVSWESFNNGDCFILDLGNNIYQWCGSKSNRFE 184
Query: 189 RAKALEVIQFLKEKYHDGNCNVAIVDDGKLDTESDSGEFWVLFGGFAPIGKKVATEDDV- 247
R KA +V + +++ G V++ ++G E + G P + ATED V
Sbjct: 185 RLKATQVSKGIRDNERSGRAQVSVFEEGA------EPEAMLQVLGPKPTLPE-ATEDTVK 237
Query: 248 --IAETTPPKLYSIEDSQVKIV------EGELSKSMLENNKCYLLDRGSE--VFVWVGRV 297
A KLY + + +V E ++ L + C++LD G + +FVW G+
Sbjct: 238 EDAANRKLAKLYKVSNGAGPMVVSLVADENPFAQGALRSEDCFILDHGKDGKIFVWKGKQ 297
Query: 298 TQVEERKAASQAAEEFISSQNRPKSIRITRVIQGYETYAFKSNFDSW 344
+EERKAA + A +FIS + PK +++ + +G ET F+ F +W
Sbjct: 298 ANMEERKAALKTASDFISKMDYPKQTQVSVLPEGGETPLFRQFFKNW 344
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 81/358 (22%), Positives = 154/358 (43%), Gaps = 37/358 (10%)
Query: 383 EVPPLLEGGGK--MEVWRINGSAKTSLPKEDIGKFYSGDCYIVLYTYHSGDRKEDYFLCC 440
E P L+ G + +++WR+ +P G F++GD Y++L T + Y L
Sbjct: 3 EHPEFLKAGKEPGLQIWRVEKFDLVPVPPNLYGDFFTGDAYVILKTVQLRNGILQYDLHY 62
Query: 441 WFGKDSIEEDQKMATRLANTMCNSLKGRPVQGRIFQGREPPQFVALFQP-MVVVKGGLCS 499
W G + +++ A + + L GR VQ R QG E F+ F+ + KGG+ S
Sbjct: 63 WLGNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGGVAS 122
Query: 500 GYKKSLADKGLTDETYTADSIALIRISGTSIHNNKTEQVDAVATSLNSSECFLLQSGSTM 559
G+K + ++ + L+++ G + + +V S N+ +CF+L G+ +
Sbjct: 123 GFKHVVPNEVVVQR--------LLQVKGRRVV--RATEVPVSWESFNNGDCFILDLGNNI 172
Query: 560 FTWHGNQSTFEQQQLAAKVAEFLKPG-----VAIKHAKEGTESSAFWFPLGGKQSYTSKK 614
+ W G++S ++ A +V++ ++ + +EG E A LG K T +
Sbjct: 173 YQWCGSKSNRFERLKATQVSKGIRDNERSGRAQVSVFEEGAEPEAMLQVLGPKP--TLPE 230
Query: 615 VSPEIVRD-------PHLFTFSFNKGAFQVEEVYN---FSQXXXXXXX--XXXXXXHAEV 662
+ + V++ L+ S G V V + F+Q ++
Sbjct: 231 ATEDTVKEDAANRKLAKLYKVSNGAGPMVVSLVADENPFAQGALRSEDCFILDHGKDGKI 290
Query: 663 FVWVGQSVDSKEKQSAFEFGQNYIDMATSLEGLSPKVPLYKVTEGNE-PCFCTTFFSW 719
FVW G+ + +E+++A + ++I S + + + EG E P F F +W
Sbjct: 291 FVWKGKQANMEERKAALKTASDFI----SKMDYPKQTQVSVLPEGGETPLFRQFFKNW 344
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 70/334 (20%), Positives = 132/334 (39%), Gaps = 58/334 (17%)
Query: 252 TPPKLYS---IEDSQVKIVEGELSKSMLENNKCYLLDRGSEVFVWVGRVTQVEERKAASQ 308
PP LY D+ V + +L +L+ + Y W+G +E AA+
Sbjct: 29 VPPNLYGDFFTGDAYVILKTVQLRNGILQYDLHY----------WLGNECSQDESGAAAI 78
Query: 309 AAEEFISSQNRPKSIRITRVIQGYETYAFKSNFDSWPSGSTAPGAEEGRGKVAALLKQQG 368
+ N ++++ R +QG+E+ F F S G + +G VA+
Sbjct: 79 FTVQLDDYLN-GRAVQ-HREVQGFESATFLGYFKS--------GLKYKKGGVAS------ 122
Query: 369 VGIKGMGKSTPTNEEVPPLLEGGGKMEVWRINGSAKTSLPKEDIGKFYSGDCYIVLYTYH 428
G P V LL+ G+ R+ + + + E F +GDC+I+
Sbjct: 123 ----GFKHVVPNEVVVQRLLQVKGR----RVVRATEVPVSWES---FNNGDCFIL----- 166
Query: 429 SGDRKEDYFLCCWFGKDSIEEDQKMATRLANTMCNSLKGRPVQGRIFQ-GREPPQFVALF 487
D + + C G S ++ AT+++ + ++ + Q +F+ G EP + +
Sbjct: 167 --DLGNNIYQWC--GSKSNRFERLKATQVSKGIRDNERSGRAQVSVFEEGAEPEAMLQVL 222
Query: 488 QPMVVVKGGLCSGYKKSLADKGLTDETYTADSIALIRISGTSIHNNKTEQVDAVATSLNS 547
P + K+ A++ L ++ + +S + N + +L S
Sbjct: 223 GPKPTLPEATEDTVKEDAANRKLAKLYKVSNGAGPMVVSLVADENPFAQ------GALRS 276
Query: 548 SECFLLQSG--STMFTWHGNQSTFEQQQLAAKVA 579
+CF+L G +F W G Q+ E+++ A K A
Sbjct: 277 EDCFILDHGKDGKIFVWKGKQANMEERKAALKTA 310
>pdb|1J72|A Chain A, Crystal Structure Of Mutant Macrophage Capping Protein
(Cap G) With Actin-Severing Activity In The Ca2+-Free
Form
Length = 347
Score = 195 bits (496), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 122/356 (34%), Positives = 182/356 (51%), Gaps = 22/356 (6%)
Query: 1 MSTSAKSLDPAFQGAGQRVGTEIWRIENFQPVPLPKSEHGKFYMGDCYIVLQTTPGKGGA 60
M T+ F G+ Q G +WR+E +PVP+ + G F+ GD Y+VL P +
Sbjct: 1 MYTAIPQSGSPFPGSVQDPGLHVWRVEKLKPVPVAQENQGVFFSGDSYLVLHNGPEE--- 57
Query: 61 YLYDIHFWIGKDTSQDEAGTAAIKTVELDAVLGGRAVQHRELQGHESDKFLSYFKPCIIP 120
+ +H WIG+ +S+DE G A+ V+LD LGGR VQHRE+QG+ESD F+SYF +
Sbjct: 58 -VSHLHLWIGQQSSRDEQGACAVLAVQLDDYLGGRPVQHREVQGNESDLFMSYFPRGLKY 116
Query: 121 LEGGVASGFRKTXXXXXXT-RLYVCKGKRVVRMKQVPFARSSLNHDDVFILDTKDKIYQF 179
EGGV SGF+ RLY KGK+ +R + S N D FILD I+ +
Sbjct: 117 QEGGVESGFKHVVPNEVVVQRLYQVKGKKNIRATERALNWDSFNTGDCFILDLGQNIFAW 176
Query: 180 NGANSNIQERAKALEVIQFLKEKYHDGNCNVAIVDDGKLDTESDSGEFWVLFGGFAPIGK 239
G SNI ER KA ++ +++ G V IV DG+ E + G P K
Sbjct: 177 CGGKSNILERNKARDLALAIRDSERQGKAQVEIVTDGEEPAEM------IQVLGPKPALK 230
Query: 240 KVATEDDVI---AETTPPKLYSIEDSQVKIVEGELSKS------MLENNKCYLLDRG--S 288
+ E+D+ A LY + D+ ++ +++ S +L ++ C++LD G
Sbjct: 231 EGNPEEDLTADKANAQAAALYKVSDATGQMNLTKVADSSPFALELLISDDCFVLDNGLCG 290
Query: 289 EVFVWVGRVTQVEERKAASQAAEEFISSQNRPKSIRITRVIQGYETYAFKSNFDSW 344
++++W GR +ER+AA Q AE FIS + ++ + QG E+ FK F W
Sbjct: 291 KIYIWKGRKANEKERQAALQVAEGFISRMQYAPNTQVEILPQGRESPIFKQFFKDW 346
Score = 87.0 bits (214), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 83/346 (23%), Positives = 150/346 (43%), Gaps = 40/346 (11%)
Query: 394 MEVWRINGSAKTSLPKEDIGKFYSGDCYIVLYTYHSGDRKEDYFLCCWFGKDSIEEDQKM 453
+ VWR+ + +E+ G F+SGD Y+VL H+G +E L W G+ S ++Q
Sbjct: 21 LHVWRVEKLKPVPVAQENQGVFFSGDSYLVL---HNGP-EEVSHLHLWIGQQSSRDEQGA 76
Query: 454 ATRLANTMCNSLKGRPVQGRIFQGREPPQFVALF-QPMVVVKGGLCSGYKKSLADKGLTD 512
LA + + L GRPVQ R QG E F++ F + + +GG+ SG+K + ++ +
Sbjct: 77 CAVLAVQLDDYLGGRPVQHREVQGNESDLFMSYFPRGLKYQEGGVESGFKHVVPNEVVVQ 136
Query: 513 ETYTADSIALIRISGTSIHNNKTEQVDAVATSLNSSECFLLQSGSTMFTWHGNQSTFEQQ 572
Y IR + +++ + S N+ +CF+L G +F W G +S ++
Sbjct: 137 RLYQVKGKKNIRATERALNWD----------SFNTGDCFILDLGQNIFAWCGGKSNILER 186
Query: 573 Q----LAAKVAEFLKPGVA-IKHAKEGTESSAFWFPLGGKQSYTSKKVSPE--------I 619
LA + + + G A ++ +G E + LG K + K+ +PE
Sbjct: 187 NKARDLALAIRDSERQGKAQVEIVTDGEEPAEMIQVLGPKPAL--KEGNPEEDLTADKAN 244
Query: 620 VRDPHLFTFSFNKGAFQVEEV-----YNFSQXXXXXXXXXXXXXHAEVFVWVGQSVDSKE 674
+ L+ S G + +V + ++++W G+ + KE
Sbjct: 245 AQAAALYKVSDATGQMNLTKVADSSPFALELLISDDCFVLDNGLCGKIYIWKGRKANEKE 304
Query: 675 KQSAFEFGQNYIDMATSLEGLSPKVPLYKVTEGNE-PCFCTTFFSW 719
+Q+A + + +I S +P + + +G E P F F W
Sbjct: 305 RQAALQVAEGFI----SRMQYAPNTQVEILPQGRESPIFKQFFKDW 346
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 79/330 (23%), Positives = 139/330 (42%), Gaps = 66/330 (20%)
Query: 288 SEVFVWVGRVTQVEERKAASQAA---EEFISSQNRPKSIRITRVIQGYETYAFKSNFDSW 344
S + +W+G+ + +E+ A + A ++++ RP R +QG E+ F S F
Sbjct: 59 SHLHLWIGQQSSRDEQGACAVLAVQLDDYLGG--RPVQ---HREVQGNESDLFMSYF--- 110
Query: 345 PSGSTAPGAEEGRGKVAALLKQQGVGIKGMGKSTPTNEEVPPLLEGGGKMEVWRINGSAK 404
P G LK Q G++ K NE V ++++ G
Sbjct: 111 PRG----------------LKYQEGGVESGFKHVVPNEVV--------VQRLYQVKGKKN 146
Query: 405 TSLPKEDIG--KFYSGDCYIVLYTYHSGDRKEDYFLCCWFGKDSIEEDQKMATRLANTMC 462
+ + F +GDC+I+ D ++ F C GK +I E K A LA +
Sbjct: 147 IRATERALNWDSFNTGDCFIL-------DLGQNIFAWCG-GKSNILERNK-ARDLALAIR 197
Query: 463 NSLKGRPVQGRIF-QGREPPQFVALFQPMVVVKGGLCSGYKKSLADKGLTDETYTADSIA 521
+S + Q I G EP + + + P +K G ++ LT + A + A
Sbjct: 198 DSERQGKAQVEIVTDGEEPAEMIQVLGPKPALKEGN--------PEEDLTADKANAQAAA 249
Query: 522 LIRISGTSIHNNKTEQVDAVATSLN---SSECFLLQSG--STMFTWHGNQSTFEQQQLAA 576
L ++S + N T+ D+ +L S +CF+L +G ++ W G ++ +++Q A
Sbjct: 250 LYKVSDATGQMNLTKVADSSPFALELLISDDCFVLDNGLCGKIYIWKGRKANEKERQAAL 309
Query: 577 KVAE-FLK-----PGVAIKHAKEGTESSAF 600
+VAE F+ P ++ +G ES F
Sbjct: 310 QVAEGFISRMQYAPNTQVEILPQGRESPIF 339
>pdb|1JHW|A Chain A, Ca2+-Binding Mimicry In The Crystal Structure Of The
Eu3+-Bound Mutant Human Macrophage Capping Protein Cap G
Length = 347
Score = 193 bits (490), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 121/356 (33%), Positives = 181/356 (50%), Gaps = 22/356 (6%)
Query: 1 MSTSAKSLDPAFQGAGQRVGTEIWRIENFQPVPLPKSEHGKFYMGDCYIVLQTTPGKGGA 60
M T+ F G+ Q G +WR+E +PVP+ + G F+ GD Y+VL P +
Sbjct: 1 MYTAIPQSGSPFPGSVQDPGLHVWRVEKLKPVPVAQENQGVFFSGDSYLVLHNGPEE--- 57
Query: 61 YLYDIHFWIGKDTSQDEAGTAAIKTVELDAVLGGRAVQHRELQGHESDKFLSYFKPCIIP 120
+ +H WIG+ +S+DE G A+ V+LD LGGR VQHRE+QG+ESD F+SYF +
Sbjct: 58 -VSHLHLWIGQQSSRDEQGACAVLAVQLDDYLGGRPVQHREVQGNESDLFMSYFPRGLKY 116
Query: 121 LEGGVASGFRKTXXXXXXT-RLYVCKGKRVVRMKQVPFARSSLNHDDVFILDTKDKIYQF 179
EGGV SGF+ RLY KG + +R + S N D FILD I+ +
Sbjct: 117 QEGGVESGFKHVVPNEVVVQRLYQVKGAKNIRATERALNWDSFNTGDCFILDLGQNIFAW 176
Query: 180 NGANSNIQERAKALEVIQFLKEKYHDGNCNVAIVDDGKLDTESDSGEFWVLFGGFAPIGK 239
G SNI ER KA ++ +++ G V IV DG+ E + G P K
Sbjct: 177 CGGKSNILERNKARDLALAIRDSERQGKAQVEIVTDGEEPAEM------IQVLGPKPALK 230
Query: 240 KVATEDDVI---AETTPPKLYSIEDSQVKIVEGELSKS------MLENNKCYLLDRG--S 288
+ E+D+ A LY + D+ ++ +++ S +L ++ C++LD G
Sbjct: 231 EGNPEEDLTADKANAQAAALYKVSDATGQMNLTKVADSSPFALELLISDDCFVLDNGLCG 290
Query: 289 EVFVWVGRVTQVEERKAASQAAEEFISSQNRPKSIRITRVIQGYETYAFKSNFDSW 344
++++W GR +ER+AA Q AE FIS + ++ + QG E+ FK F W
Sbjct: 291 KIYIWKGRKANEKERQAALQVAEGFISRMQYAPNTQVEILPQGRESPIFKQFFKDW 346
Score = 87.8 bits (216), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 83/346 (23%), Positives = 150/346 (43%), Gaps = 40/346 (11%)
Query: 394 MEVWRINGSAKTSLPKEDIGKFYSGDCYIVLYTYHSGDRKEDYFLCCWFGKDSIEEDQKM 453
+ VWR+ + +E+ G F+SGD Y+VL H+G +E L W G+ S ++Q
Sbjct: 21 LHVWRVEKLKPVPVAQENQGVFFSGDSYLVL---HNGP-EEVSHLHLWIGQQSSRDEQGA 76
Query: 454 ATRLANTMCNSLKGRPVQGRIFQGREPPQFVALF-QPMVVVKGGLCSGYKKSLADKGLTD 512
LA + + L GRPVQ R QG E F++ F + + +GG+ SG+K + ++ +
Sbjct: 77 CAVLAVQLDDYLGGRPVQHREVQGNESDLFMSYFPRGLKYQEGGVESGFKHVVPNEVVVQ 136
Query: 513 ETYTADSIALIRISGTSIHNNKTEQVDAVATSLNSSECFLLQSGSTMFTWHGNQSTFEQQ 572
Y IR + +++ + S N+ +CF+L G +F W G +S ++
Sbjct: 137 RLYQVKGAKNIRATERALNWD----------SFNTGDCFILDLGQNIFAWCGGKSNILER 186
Query: 573 Q----LAAKVAEFLKPGVA-IKHAKEGTESSAFWFPLGGKQSYTSKKVSPE--------I 619
LA + + + G A ++ +G E + LG K + K+ +PE
Sbjct: 187 NKARDLALAIRDSERQGKAQVEIVTDGEEPAEMIQVLGPKPAL--KEGNPEEDLTADKAN 244
Query: 620 VRDPHLFTFSFNKGAFQVEEV-----YNFSQXXXXXXXXXXXXXHAEVFVWVGQSVDSKE 674
+ L+ S G + +V + ++++W G+ + KE
Sbjct: 245 AQAAALYKVSDATGQMNLTKVADSSPFALELLISDDCFVLDNGLCGKIYIWKGRKANEKE 304
Query: 675 KQSAFEFGQNYIDMATSLEGLSPKVPLYKVTEGNE-PCFCTTFFSW 719
+Q+A + + +I S +P + + +G E P F F W
Sbjct: 305 RQAALQVAEGFI----SRMQYAPNTQVEILPQGRESPIFKQFFKDW 346
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 79/330 (23%), Positives = 140/330 (42%), Gaps = 66/330 (20%)
Query: 288 SEVFVWVGRVTQVEERKAASQAA---EEFISSQNRPKSIRITRVIQGYETYAFKSNFDSW 344
S + +W+G+ + +E+ A + A ++++ RP R +QG E+ F S F
Sbjct: 59 SHLHLWIGQQSSRDEQGACAVLAVQLDDYLGG--RPVQ---HREVQGNESDLFMSYF--- 110
Query: 345 PSGSTAPGAEEGRGKVAALLKQQGVGIKGMGKSTPTNEEVPPLLEGGGKMEVWRINGSAK 404
P G LK Q G++ K NE V ++++ G+
Sbjct: 111 PRG----------------LKYQEGGVESGFKHVVPNEVV--------VQRLYQVKGAKN 146
Query: 405 TSLPKEDIG--KFYSGDCYIVLYTYHSGDRKEDYFLCCWFGKDSIEEDQKMATRLANTMC 462
+ + F +GDC+I+ D ++ F C GK +I E K A LA +
Sbjct: 147 IRATERALNWDSFNTGDCFIL-------DLGQNIFAWCG-GKSNILERNK-ARDLALAIR 197
Query: 463 NSLKGRPVQGRIF-QGREPPQFVALFQPMVVVKGGLCSGYKKSLADKGLTDETYTADSIA 521
+S + Q I G EP + + + P +K G ++ LT + A + A
Sbjct: 198 DSERQGKAQVEIVTDGEEPAEMIQVLGPKPALKEGN--------PEEDLTADKANAQAAA 249
Query: 522 LIRISGTSIHNNKTEQVDAVATSLN---SSECFLLQSG--STMFTWHGNQSTFEQQQLAA 576
L ++S + N T+ D+ +L S +CF+L +G ++ W G ++ +++Q A
Sbjct: 250 LYKVSDATGQMNLTKVADSSPFALELLISDDCFVLDNGLCGKIYIWKGRKANEKERQAAL 309
Query: 577 KVAE-FLK-----PGVAIKHAKEGTESSAF 600
+VAE F+ P ++ +G ES F
Sbjct: 310 QVAEGFISRMQYAPNTQVEILPQGRESPIF 339
>pdb|3FG7|A Chain A, The Crystal Structure Of Villin Domain 6
pdb|3FG7|B Chain B, The Crystal Structure Of Villin Domain 6
Length = 398
Score = 167 bits (422), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 106/339 (31%), Positives = 169/339 (49%), Gaps = 19/339 (5%)
Query: 389 EGGGKMEVWRINGSAKTSLPKEDIGKFYSGDCYIVLYTYHSGDRKEDYFLCCWFGKDSIE 448
+G G+++VWRI + + +G FY GDCY++LYTY G+ K+ Y L W G + +
Sbjct: 59 DGSGEVQVWRIENLELVPVDSKWLGHFYGGDCYLLLYTYLIGE-KQHYLLYVWQGSQASQ 117
Query: 449 EDQKMATRLANTMCNSLKGRPVQGRIFQGREPPQFVALFQ-PMVVVKGGLCSGYKKSLAD 507
++ + A + G PVQ R+ G+EPP +++F+ MVV +GG
Sbjct: 118 DEITASAYQAVILDQKYNGEPVQIRVPMGKEPPHLMSIFKGRMVVYQGGTSR-------- 169
Query: 508 KGLTDETYTADSIALIRISGTSIHNNKTEQVDAVATSLNSSECFLLQSGSTMFTWHGNQS 567
T+ T S L ++ GT +N K +V A A LNS++ F+L++ S + W G
Sbjct: 170 ---TNNLETGPSTRLFQVQGTGANNTKAFEVPARANFLNSNDVFVLKTQSCCYLWCGKGC 226
Query: 568 TFEQQQLAAKVAEFLKPGVAIKHAKEGTESSAFWFPLGGKQSYTSKKVSPE--IVRDPHL 625
+ +++++A VA+ + + EG E + FW LGGK Y + K E +V P L
Sbjct: 227 SGDEREMAKMVADTIS-RTEKQVVVEGQEPANFWMALGGKAPYANTKRLQEENLVITPRL 285
Query: 626 FTFSFNKGAFQVEEVYNFSQXXXXXXXXXXXXXHAEVFVWVGQSVDSKEKQSAFEFGQNY 685
F S G F E+ +F+Q +VF W+G+ + +EK++A Q Y
Sbjct: 286 FECSNKTGRFLATEIPDFNQDDLEEDDVFLLDVWDQVFFWIGKHANEEEKKAAATTAQEY 345
Query: 686 IDMATSLEGLSPKVPLYKVTEGNE-PCFCTTFFSWDPTK 723
+ T G P+ P+ V +G+E P F F +WDP K
Sbjct: 346 --LKTHPSGRDPETPIIVVKQGHEPPTFTGWFLAWDPFK 382
Score = 131 bits (330), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 100/334 (29%), Positives = 155/334 (46%), Gaps = 29/334 (8%)
Query: 21 TEIWRIENFQPVPLPKSEHGKFYMGDCYIVLQT-TPGKGGAYLYDIHFWIGKDTSQDEAG 79
++WRIEN + VP+ G FY GDCY++L T G+ YL ++ W G SQDE
Sbjct: 64 VQVWRIENLELVPVDSKWLGHFYGGDCYLLLYTYLIGEKQHYL--LYVWQGSQASQDEIT 121
Query: 80 TAAIKTVELDAVLGGRAVQHRELQGHESDKFLSYFKPCIIPLEGGVASGFRKTXXXXXXT 139
+A + V LD G VQ R G E +S FK ++ +GG + T
Sbjct: 122 ASAYQAVILDQKYNGEPVQIRVPMGKEPPHLMSIFKGRMVVYQGGTSR--TNNLETGPST 179
Query: 140 RLYVCKGKRVVRMK--QVPFARSSLNHDDVFILDTKDKIYQFNGANSNIQERAKALEVIQ 197
RL+ +G K +VP + LN +DVF+L T+ Y + G + ER A V
Sbjct: 180 RLFQVQGTGANNTKAFEVPARANFLNSNDVFVLKTQSCCYLWCGKGCSGDEREMAKMVAD 239
Query: 198 FLKEKYHDGNCNVAIVDDGKLDTESDSGEFWVLFGGFAPIG--KKVATEDDVIAETTPPK 255
+ +V +G+ + FW+ GG AP K++ E+ VI P+
Sbjct: 240 TISRTEKQ------VVVEGQ-----EPANFWMALGGKAPYANTKRLQEENLVIT----PR 284
Query: 256 LYSIEDSQVKIVEGEL---SKSMLENNKCYLLDRGSEVFVWVGRVTQVEERKAASQAAEE 312
L+ + + + E+ ++ LE + +LLD +VF W+G+ EE+KAA+ A+E
Sbjct: 285 LFECSNKTGRFLATEIPDFNQDDLEEDDVFLLDVWDQVFFWIGKHANEEEKKAAATTAQE 344
Query: 313 FISSQ--NRPKSIRITRVIQGYETYAFKSNFDSW 344
++ + R I V QG+E F F +W
Sbjct: 345 YLKTHPSGRDPETPIIVVKQGHEPPTFTGWFLAW 378
>pdb|1NPH|A Chain A, Gelsolin Domains 4-6 In Active, Actin Free Conformation
Identifies Sites Of Regulatory Calcium Ions
Length = 329
Score = 147 bits (371), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 104/344 (30%), Positives = 160/344 (46%), Gaps = 33/344 (9%)
Query: 389 EGGGKMEVWRINGSAKTSLPKEDIGKFYSGDCYIVLYTYHSGDRKEDYFLCCWFGKDSIE 448
+G G+ ++WRI GS K + G+FY GD YI+LY Y G R + + W G S +
Sbjct: 2 DGTGQKQIWRIEGSNKVPVDPATYGQFYGGDSYIILYNYRHGGR-QGQIIYNWQGAQSTQ 60
Query: 449 EDQKMATRLANTMCNSLKGRPVQGRIFQGREPPQFVALF--QPMVVVKGGLCSGYKKSLA 506
++ + L + L G PVQ R+ QG+EP ++LF +PM++ KGG
Sbjct: 61 DEVAASAILTAQLDEELGGTPVQSRVVQGKEPAHLMSLFGGKPMIIYKGGTSR------- 113
Query: 507 DKGLTDETYTADSIALIRISGTSIHNNKTEQVDAVATSLNSSECFLLQSGSTMFTWHGNQ 566
D G T SI L ++ +S + +V + +LNS++ F+L++ S + W G
Sbjct: 114 DGGQT----APASIRLFQVRASSSGATRAVEVMPKSGALNSNDAFVLKTPSAAYLWVGAG 169
Query: 567 STFEQQQLAAKVAEFLKPGVAIKHAK--EGTESSAFWFPLGGKQSYTSKKVSPEI----- 619
++ ++ A ++ + L+ +H + EG+E FW LGGK SY + SP +
Sbjct: 170 ASEAEKTAAQELLKVLRS----QHVQVEEGSEPDGFWEALGGKTSY---RTSPRLKDKKM 222
Query: 620 -VRDPHLFTFSFNKGAFQVEEVYN-FSQXXXXXXXXXXXXXHAEVFVWVGQSVDSKEKQS 677
P LF S G F +EEV Q +VFVWVG+ +EK
Sbjct: 223 DAHPPRLFACSNRIGRFVIEEVPGELMQEDLATDDVMLLDTWDQVFVWVGKDSQEEEKTE 282
Query: 678 AFEFGQNYIDMATSLEGLSPKVPLYKVTEGNE-PCFCTTFFSWD 720
A + YI+ T + P+ V +G E P F F WD
Sbjct: 283 ALTSAKRYIE--TDPANRDRRTPITVVRQGFEPPSFVGWFLGWD 324
Score = 140 bits (352), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 108/343 (31%), Positives = 168/343 (48%), Gaps = 34/343 (9%)
Query: 14 GAGQRVGTEIWRIENFQPVPLPKSEHGKFYMGDCYIVLQTTP--GKGGAYLYDIHFWIGK 71
G GQ+ +IWRIE VP+ + +G+FY GD YI+L G+ G +Y+ W G
Sbjct: 3 GTGQK---QIWRIEGSNKVPVDPATYGQFYGGDSYIILYNYRHGGRQGQIIYN---WQGA 56
Query: 72 DTSQDEAGTAAIKTVELDAVLGGRAVQHRELQGHESDKFLSYF--KPCIIPLEGGVASGF 129
++QDE +AI T +LD LGG VQ R +QG E +S F KP II +GG +
Sbjct: 57 QSTQDEVAASAILTAQLDEELGGTPVQSRVVQGKEPAHLMSLFGGKPMII-YKGGTSRDG 115
Query: 130 RKTXXXXXXTRLYVCKGKR--VVRMKQVPFARSSLNHDDVFILDTKDKIYQFNGANSNIQ 187
+T RL+ + R +V +LN +D F+L T Y + GA ++
Sbjct: 116 GQT--APASIRLFQVRASSSGATRAVEVMPKSGALNSNDAFVLKTPSAAYLWVGAGASEA 173
Query: 188 ERAKALEVIQFLKEKYHDGNCNVAIVDDGKLDTESDSGEFWVLFGGFAPIGKKVATEDDV 247
E+ A E+++ L+ ++ V++G S+ FW GG +D
Sbjct: 174 EKTAAQELLKVLRSQH-------VQVEEG-----SEPDGFWEALGGKTSYRTSPRLKDKK 221
Query: 248 IAETTPPKLYSIEDS----QVKIVEGELSKSMLENNKCYLLDRGSEVFVWVGRVTQVEER 303
+ + PP+L++ + ++ V GEL + L + LLD +VFVWVG+ +Q EE+
Sbjct: 222 M-DAHPPRLFACSNRIGRFVIEEVPGELMQEDLATDDVMLLDTWDQVFVWVGKDSQEEEK 280
Query: 304 KAASQAAEEFISSQ--NRPKSIRITRVIQGYETYAFKSNFDSW 344
A +A+ +I + NR + IT V QG+E +F F W
Sbjct: 281 TEALTSAKRYIETDPANRDRRTPITVVRQGFEPPSFVGWFLGW 323
>pdb|1P8X|A Chain A, The Calcium-activated C-terminal Half Of Gelsolin
pdb|1P8X|B Chain B, The Calcium-activated C-terminal Half Of Gelsolin
pdb|1P8X|C Chain C, The Calcium-activated C-terminal Half Of Gelsolin
pdb|2FH1|A Chain A, C-Terminal Half Of Gelsolin Soaked In Low Calcium At Ph
4.5
pdb|2FH1|B Chain B, C-Terminal Half Of Gelsolin Soaked In Low Calcium At Ph
4.5
pdb|2FH1|C Chain C, C-Terminal Half Of Gelsolin Soaked In Low Calcium At Ph
4.5
pdb|2FH2|A Chain A, C-Terminal Half Of Gelsolin Soaked In Egta At Ph 4.5
pdb|2FH2|B Chain B, C-Terminal Half Of Gelsolin Soaked In Egta At Ph 4.5
pdb|2FH2|C Chain C, C-Terminal Half Of Gelsolin Soaked In Egta At Ph 4.5
pdb|2FH3|A Chain A, C-Terminal Half Of Gelsolin Soaked In Low Calcium At Ph 8
pdb|2FH3|B Chain B, C-Terminal Half Of Gelsolin Soaked In Low Calcium At Ph 8
pdb|2FH3|C Chain C, C-Terminal Half Of Gelsolin Soaked In Low Calcium At Ph 8
pdb|2FH4|A Chain A, C-Terminal Half Of Gelsolin Soaked In Egta At Ph 8
pdb|2FH4|B Chain B, C-Terminal Half Of Gelsolin Soaked In Egta At Ph 8
pdb|2FH4|C Chain C, C-Terminal Half Of Gelsolin Soaked In Egta At Ph 8
Length = 344
Score = 144 bits (362), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 101/342 (29%), Positives = 154/342 (45%), Gaps = 29/342 (8%)
Query: 389 EGGGKMEVWRINGSAKTSLPKEDIGKFYSGDCYIVLYTYHSGDRKEDYFLCCWFGKDSIE 448
+G G+ ++WRI GS K + G+FY GD YI+LY Y G R + + W G S +
Sbjct: 4 DGTGQKQIWRIEGSNKVPVDPATYGQFYGGDSYIILYNYRHGGR-QGQIIYNWQGAQSTQ 62
Query: 449 EDQKMATRLANTMCNSLKGRPVQGRIFQGREPPQFVALF--QPMVVVKGGLCSGYKKSLA 506
++ + L + L G PVQ R+ QG+EP ++LF +PM++ KGG
Sbjct: 63 DEVAASAILTAQLDEELGGTPVQSRVVQGKEPAHLMSLFGGKPMIIYKGGTSR------- 115
Query: 507 DKGLTDETYTADSIALIRISGTSIHNNKTEQVDAVATSLNSSECFLLQSGSTMFTWHGNQ 566
+ G T S L ++ S + +V A +LNS++ F+L++ S + W G
Sbjct: 116 EGGQT----APASTRLFQVRANSAGATRAVEVLPKAGALNSNDAFVLKTPSAAYLWVGTG 171
Query: 567 STFEQQQLAAKVAEFLKPGVAIKHAKEGTESSAFWFPLGGKQSYTSKKVSPEI------V 620
++ ++ A ++ L+ EG+E FW LGGK +Y + SP +
Sbjct: 172 ASEAEKTGAQELLRVLR--AQPVQVAEGSEPDGFWEALGGKAAY---RTSPRLKDKKMDA 226
Query: 621 RDPHLFTFSFNKGAFQVEEVYN-FSQXXXXXXXXXXXXXHAEVFVWVGQSVDSKEKQSAF 679
P LF S G F +EEV Q +VFVWVG+ +EK A
Sbjct: 227 HPPRLFACSNKIGRFVIEEVPGELMQEDLATDDVMLLDTWDQVFVWVGKDSQEEEKTEAL 286
Query: 680 EFGQNYIDMATSLEGLSPKVPLYKVTEGNE-PCFCTTFFSWD 720
+ YI+ T + P+ V +G E P F F WD
Sbjct: 287 TSAKRYIE--TDPANRDRRTPITVVKQGFEPPSFVGWFLGWD 326
Score = 139 bits (350), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 108/343 (31%), Positives = 167/343 (48%), Gaps = 34/343 (9%)
Query: 14 GAGQRVGTEIWRIENFQPVPLPKSEHGKFYMGDCYIVLQTTP--GKGGAYLYDIHFWIGK 71
G GQ+ +IWRIE VP+ + +G+FY GD YI+L G+ G +Y+ W G
Sbjct: 5 GTGQK---QIWRIEGSNKVPVDPATYGQFYGGDSYIILYNYRHGGRQGQIIYN---WQGA 58
Query: 72 DTSQDEAGTAAIKTVELDAVLGGRAVQHRELQGHESDKFLSYF--KPCIIPLEGGVASGF 129
++QDE +AI T +LD LGG VQ R +QG E +S F KP II +GG +
Sbjct: 59 QSTQDEVAASAILTAQLDEELGGTPVQSRVVQGKEPAHLMSLFGGKPMII-YKGGTSREG 117
Query: 130 RKTXXXXXXTRLYVCKGKR--VVRMKQVPFARSSLNHDDVFILDTKDKIYQFNGANSNIQ 187
+T TRL+ + R +V +LN +D F+L T Y + G ++
Sbjct: 118 GQT--APASTRLFQVRANSAGATRAVEVLPKAGALNSNDAFVLKTPSAAYLWVGTGASEA 175
Query: 188 ERAKALEVIQFLKEKYHDGNCNVAIVDDGKLDTESDSGEFWVLFGGFAPIGKKVATEDDV 247
E+ A E+++ L+ + V + + + D FW GG A +D
Sbjct: 176 EKTGAQELLRVLRAQ------PVQVAEGSEPDG------FWEALGGKAAYRTSPRLKDKK 223
Query: 248 IAETTPPKLYSIEDS----QVKIVEGELSKSMLENNKCYLLDRGSEVFVWVGRVTQVEER 303
+ + PP+L++ + ++ V GEL + L + LLD +VFVWVG+ +Q EE+
Sbjct: 224 M-DAHPPRLFACSNKIGRFVIEEVPGELMQEDLATDDVMLLDTWDQVFVWVGKDSQEEEK 282
Query: 304 KAASQAAEEFISSQ--NRPKSIRITRVIQGYETYAFKSNFDSW 344
A +A+ +I + NR + IT V QG+E +F F W
Sbjct: 283 TEALTSAKRYIETDPANRDRRTPITVVKQGFEPPSFVGWFLGW 325
>pdb|1H1V|G Chain G, Gelsolin G4-G6ACTIN COMPLEX
Length = 331
Score = 143 bits (360), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 101/342 (29%), Positives = 154/342 (45%), Gaps = 29/342 (8%)
Query: 389 EGGGKMEVWRINGSAKTSLPKEDIGKFYSGDCYIVLYTYHSGDRKEDYFLCCWFGKDSIE 448
+G G+ ++WRI GS K + G+FY GD YI+LY Y G R + + W G S +
Sbjct: 4 DGTGQKQIWRIEGSNKVPVDPATYGQFYGGDSYIILYNYRHGGR-QGQIIYNWQGAQSTQ 62
Query: 449 EDQKMATRLANTMCNSLKGRPVQGRIFQGREPPQFVALF--QPMVVVKGGLCSGYKKSLA 506
++ + L + L G PVQ R+ QG+EP ++LF +PM++ KGG
Sbjct: 63 DEVAASAILTAQLDEELGGTPVQSRVVQGKEPAHLMSLFGGKPMIIYKGGTSR------- 115
Query: 507 DKGLTDETYTADSIALIRISGTSIHNNKTEQVDAVATSLNSSECFLLQSGSTMFTWHGNQ 566
+ G T S L ++ S + +V A +LNS++ F+L++ S + W G
Sbjct: 116 EGGQT----APASTRLFQVRANSAGATRAVEVLPKAGALNSNDAFVLKTPSAAYLWVGTG 171
Query: 567 STFEQQQLAAKVAEFLKPGVAIKHAKEGTESSAFWFPLGGKQSYTSKKVSPEI------V 620
++ ++ A ++ L+ EG+E FW LGGK +Y + SP +
Sbjct: 172 ASEAEKTGAQELLRVLR--AQPVQVAEGSEPDGFWEALGGKAAY---RTSPRLKDKKMDA 226
Query: 621 RDPHLFTFSFNKGAFQVEEVYN-FSQXXXXXXXXXXXXXHAEVFVWVGQSVDSKEKQSAF 679
P LF S G F +EEV Q +VFVWVG+ +EK A
Sbjct: 227 HPPRLFACSNKIGRFVIEEVPGELMQEDLATDDVMLLDTWDQVFVWVGKDSQEEEKTEAL 286
Query: 680 EFGQNYIDMATSLEGLSPKVPLYKVTEGNE-PCFCTTFFSWD 720
+ YI+ T + P+ V +G E P F F WD
Sbjct: 287 TSAKRYIE--TDPANRDRRTPITVVKQGFEPPSFVGWFLGWD 326
Score = 139 bits (349), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 108/343 (31%), Positives = 167/343 (48%), Gaps = 34/343 (9%)
Query: 14 GAGQRVGTEIWRIENFQPVPLPKSEHGKFYMGDCYIVLQTTP--GKGGAYLYDIHFWIGK 71
G GQ+ +IWRIE VP+ + +G+FY GD YI+L G+ G +Y+ W G
Sbjct: 5 GTGQK---QIWRIEGSNKVPVDPATYGQFYGGDSYIILYNYRHGGRQGQIIYN---WQGA 58
Query: 72 DTSQDEAGTAAIKTVELDAVLGGRAVQHRELQGHESDKFLSYF--KPCIIPLEGGVASGF 129
++QDE +AI T +LD LGG VQ R +QG E +S F KP II +GG +
Sbjct: 59 QSTQDEVAASAILTAQLDEELGGTPVQSRVVQGKEPAHLMSLFGGKPMII-YKGGTSREG 117
Query: 130 RKTXXXXXXTRLYVCKGKR--VVRMKQVPFARSSLNHDDVFILDTKDKIYQFNGANSNIQ 187
+T TRL+ + R +V +LN +D F+L T Y + G ++
Sbjct: 118 GQT--APASTRLFQVRANSAGATRAVEVLPKAGALNSNDAFVLKTPSAAYLWVGTGASEA 175
Query: 188 ERAKALEVIQFLKEKYHDGNCNVAIVDDGKLDTESDSGEFWVLFGGFAPIGKKVATEDDV 247
E+ A E+++ L+ + V + + + D FW GG A +D
Sbjct: 176 EKTGAQELLRVLRAQ------PVQVAEGSEPDG------FWEALGGKAAYRTSPRLKDKK 223
Query: 248 IAETTPPKLYSIEDS----QVKIVEGELSKSMLENNKCYLLDRGSEVFVWVGRVTQVEER 303
+ + PP+L++ + ++ V GEL + L + LLD +VFVWVG+ +Q EE+
Sbjct: 224 M-DAHPPRLFACSNKIGRFVIEEVPGELMQEDLATDDVMLLDTWDQVFVWVGKDSQEEEK 282
Query: 304 KAASQAAEEFISSQ--NRPKSIRITRVIQGYETYAFKSNFDSW 344
A +A+ +I + NR + IT V QG+E +F F W
Sbjct: 283 TEALTSAKRYIETDPANRDRRTPITVVKQGFEPPSFVGWFLGW 325
>pdb|3FG6|A Chain A, Structure Of The C-terminus Of Adseverin
pdb|3FG6|C Chain C, Structure Of The C-terminus Of Adseverin
pdb|3FG6|G Chain G, Structure Of The C-terminus Of Adseverin
pdb|3FG6|E Chain E, Structure Of The C-terminus Of Adseverin
pdb|3FG6|F Chain F, Structure Of The C-terminus Of Adseverin
pdb|3FG6|H Chain H, Structure Of The C-terminus Of Adseverin
pdb|3FG6|D Chain D, Structure Of The C-terminus Of Adseverin
pdb|3FG6|B Chain B, Structure Of The C-terminus Of Adseverin
Length = 371
Score = 143 bits (360), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 95/342 (27%), Positives = 164/342 (47%), Gaps = 27/342 (7%)
Query: 389 EGGGKMEVWRINGSAKTSLPKEDIGKFYSGDCYIVLYTYHSGDRKEDYFLCCWFGKDSIE 448
+G GK+E+WR+ + + + + G+FY GDCYI+LYTY G + W G ++
Sbjct: 49 DGSGKVEIWRVENNGRIQVDQNSYGEFYGGDCYIILYTYPRGQ-----IIYTWQGANATR 103
Query: 449 EDQKMATRLANTMCNSLKGRPVQGRIFQGREPPQFVALF--QPMVVVKGGLCSGYKKSLA 506
++ + L + SL G+ VQ R+ QG+EP ++LF +P+++ YK +
Sbjct: 104 DELTTSAFLTVQLDRSLGGQAVQIRVSQGKEPVHLLSLFKDKPLII--------YKNGTS 155
Query: 507 DKGLTDETYTADSIALIRISGTSIHNNKTEQVDAVATSLNSSECFLLQ-SGSTMFTWHGN 565
KG A L ++ + +VD A SLNS++ F+L+ ++ + W G
Sbjct: 156 KKG---GQAPAPPTRLFQVRRNLASITRIVEVDVDANSLNSNDVFVLKLPQNSGYIWVGK 212
Query: 566 QSTFEQQQLAAKVAEFLKPGVAIKHAKEGTESSAFWFPLGGKQSYTSKKVSPEIVRD--P 623
++ E+++ A VA LK +EG E FW LGGK+ Y + + D P
Sbjct: 213 GASQEEEKGAEYVASVLK--CKTLRIQEGEEPEEFWNSLGGKKDYQTSPLLETQAEDHPP 270
Query: 624 HLFTFSFNKGAFQVEEVY-NFSQXXXXXXXXXXXXXHAEVFVWVGQSVDSKEKQSAFEFG 682
L+ S G F +EE+ F+Q ++F+W+G+ + EK+ + +
Sbjct: 271 RLYGCSNKTGRFVIEEIPGEFTQDDLAEDDVMLLDAWEQIFIWIGKDANEVEKKESLKSA 330
Query: 683 QNYIDMATSLEGLSPKVPLYKVTEGNE-PCFCTTFFSWDPTK 723
+ Y++ T G + P+ + +G+E P F F WD +K
Sbjct: 331 KMYLE--TDPSGRDKRTPIVIIKQGHEPPTFTGWFLGWDSSK 370
Score = 129 bits (325), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 103/337 (30%), Positives = 161/337 (47%), Gaps = 33/337 (9%)
Query: 21 TEIWRIENFQPVPLPKSEHGKFYMGDCYIVLQTTPGKGGAYLYDIHFWIGKDTSQDEAGT 80
EIWR+EN + + ++ +G+FY GDCYI+L T P +G I+ W G + ++DE T
Sbjct: 54 VEIWRVENNGRIQVDQNSYGEFYGGDCYIILYTYP-RGQI----IYTWQGANATRDELTT 108
Query: 81 AAIKTVELDAVLGGRAVQHRELQGHESDKFLSYF--KPCIIPLEGGVASGFRKTXXXXXX 138
+A TV+LD LGG+AVQ R QG E LS F KP II G G +
Sbjct: 109 SAFLTVQLDRSLGGQAVQIRVSQGKEPVHLLSLFKDKPLIIYKNGTSKKGGQ---APAPP 165
Query: 139 TRLYVCKGK--RVVRMKQVPFARSSLNHDDVFILDT-KDKIYQFNGANSNIQERAKALEV 195
TRL+ + + R+ +V +SLN +DVF+L ++ Y + G ++ +E A V
Sbjct: 166 TRLFQVRRNLASITRIVEVDVDANSLNSNDVFVLKLPQNSGYIWVGKGASQEEEKGAEYV 225
Query: 196 IQFLKEKYHDGNCNVAIVDDGKLDTESDSGEFWVLFGGFAPIGKKVATEDDVIAETTPPK 255
LK C + +G+ + EFW GG E AE PP+
Sbjct: 226 ASVLK-------CKTLRIQEGE-----EPEEFWNSLGGKKDYQTSPLLETQ--AEDHPPR 271
Query: 256 LYSIEDSQ----VKIVEGELSKSMLENNKCYLLDRGSEVFVWVGRVTQVEERKAASQAAE 311
LY + ++ + GE ++ L + LLD ++F+W+G+ E+K + ++A+
Sbjct: 272 LYGCSNKTGRFVIEEIPGEFTQDDLAEDDVMLLDAWEQIFIWIGKDANEVEKKESLKSAK 331
Query: 312 EFISSQ--NRPKSIRITRVIQGYETYAFKSNFDSWPS 346
++ + R K I + QG+E F F W S
Sbjct: 332 MYLETDPSGRDKRTPIVIIKQGHEPPTFTGWFLGWDS 368
>pdb|3TU5|B Chain B, Actin Complex With Gelsolin Segment 1 Fused To Cobl
Segment
Length = 297
Score = 137 bits (346), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 63/123 (51%), Positives = 83/123 (67%)
Query: 10 PAFQGAGQRVGTEIWRIENFQPVPLPKSEHGKFYMGDCYIVLQTTPGKGGAYLYDIHFWI 69
P F AG+ G +IWR+E F VP+P + +G F+ GD Y++L+T + G YD+H+W+
Sbjct: 24 PEFLKAGKEPGLQIWRVEKFDLVPVPTNLYGDFFTGDAYVILKTVQLRNGNLQYDLHYWL 83
Query: 70 GKDTSQDEAGTAAIKTVELDAVLGGRAVQHRELQGHESDKFLSYFKPCIIPLEGGVASGF 129
G + SQDE+G AAI TV+LD L GRAVQHRE+QG ES FL YFK + +GGVAS
Sbjct: 84 GNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGGVASKL 143
Query: 130 RKT 132
RK
Sbjct: 144 RKV 146
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 58/124 (46%), Gaps = 3/124 (2%)
Query: 383 EVPPLLEGGGK--MEVWRINGSAKTSLPKEDIGKFYSGDCYIVLYTYHSGDRKEDYFLCC 440
E P L+ G + +++WR+ +P G F++GD Y++L T + Y L
Sbjct: 22 EHPEFLKAGKEPGLQIWRVEKFDLVPVPTNLYGDFFTGDAYVILKTVQLRNGNLQYDLHY 81
Query: 441 WFGKDSIEEDQKMATRLANTMCNSLKGRPVQGRIFQGREPPQFVALFQP-MVVVKGGLCS 499
W G + +++ A + + L GR VQ R QG E F+ F+ + KGG+ S
Sbjct: 82 WLGNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGGVAS 141
Query: 500 GYKK 503
+K
Sbjct: 142 KLRK 145
>pdb|1T44|G Chain G, Structural Basis Of Actin Sequestration By Thymosin-B4:
Implications For Arp23 ACTIVATION
Length = 147
Score = 137 bits (344), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 63/121 (52%), Positives = 84/121 (69%)
Query: 10 PAFQGAGQRVGTEIWRIENFQPVPLPKSEHGKFYMGDCYIVLQTTPGKGGAYLYDIHFWI 69
P F AG+ G +IWR+E F VP+P + +G F+ GD Y++L+T + G YD+H+W+
Sbjct: 6 PEFLKAGKEPGLQIWRVEKFDLVPVPTNLYGDFFTGDAYVILKTVQLRNGNLQYDLHYWL 65
Query: 70 GKDTSQDEAGTAAIKTVELDAVLGGRAVQHRELQGHESDKFLSYFKPCIIPLEGGVASGF 129
G + SQDE+G AAI TV+LD L GRAVQHRE+QG ES FL YFK + +GGVASGF
Sbjct: 66 GNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGGVASGF 125
Query: 130 R 130
+
Sbjct: 126 K 126
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 3/125 (2%)
Query: 381 NEEVPPLLEGGGK--MEVWRINGSAKTSLPKEDIGKFYSGDCYIVLYTYHSGDRKEDYFL 438
+ E P L+ G + +++WR+ +P G F++GD Y++L T + Y L
Sbjct: 2 SHEHPEFLKAGKEPGLQIWRVEKFDLVPVPTNLYGDFFTGDAYVILKTVQLRNGNLQYDL 61
Query: 439 CCWFGKDSIEEDQKMATRLANTMCNSLKGRPVQGRIFQGREPPQFVALFQP-MVVVKGGL 497
W G + +++ A + + L GR VQ R QG E F+ F+ + KGG+
Sbjct: 62 HYWLGNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGGV 121
Query: 498 CSGYK 502
SG+K
Sbjct: 122 ASGFK 126
>pdb|1P8Z|G Chain G, Complex Between Rabbit Muscle Alpha-Actin: Human Gelsolin
Residues Val26-Glu156
Length = 136
Score = 136 bits (343), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 63/123 (51%), Positives = 84/123 (68%)
Query: 10 PAFQGAGQRVGTEIWRIENFQPVPLPKSEHGKFYMGDCYIVLQTTPGKGGAYLYDIHFWI 69
P F AG+ G +IWR+E F VP+P + +G F+ GD Y++L+T + G YD+H+W+
Sbjct: 6 PEFLKAGKEPGLQIWRVEKFDLVPVPTNLYGDFFTGDAYVILKTVQLRNGNLQYDLHYWL 65
Query: 70 GKDTSQDEAGTAAIKTVELDAVLGGRAVQHRELQGHESDKFLSYFKPCIIPLEGGVASGF 129
G + SQDE+G AAI TV+LD L GRAVQHRE+QG ES FL YFK + +GGVASGF
Sbjct: 66 GNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGGVASGF 125
Query: 130 RKT 132
+
Sbjct: 126 KHV 128
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 62/129 (48%), Gaps = 3/129 (2%)
Query: 383 EVPPLLEGGGK--MEVWRINGSAKTSLPKEDIGKFYSGDCYIVLYTYHSGDRKEDYFLCC 440
E P L+ G + +++WR+ +P G F++GD Y++L T + Y L
Sbjct: 4 EHPEFLKAGKEPGLQIWRVEKFDLVPVPTNLYGDFFTGDAYVILKTVQLRNGNLQYDLHY 63
Query: 441 WFGKDSIEEDQKMATRLANTMCNSLKGRPVQGRIFQGREPPQFVALFQP-MVVVKGGLCS 499
W G + +++ A + + L GR VQ R QG E F+ F+ + KGG+ S
Sbjct: 64 WLGNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGGVAS 123
Query: 500 GYKKSLADK 508
G+K + ++
Sbjct: 124 GFKHVVPNE 132
>pdb|1D4X|G Chain G, Crystal Structure Of Caenorhabditis Elegans Mg-Atp Actin
Complexed With Human Gelsolin Segment 1 At 1.75 A
Resolution
Length = 126
Score = 136 bits (343), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 63/121 (52%), Positives = 84/121 (69%)
Query: 10 PAFQGAGQRVGTEIWRIENFQPVPLPKSEHGKFYMGDCYIVLQTTPGKGGAYLYDIHFWI 69
P F AG+ G +IWR+E F VP+P + +G F+ GD Y++L+T + G YD+H+W+
Sbjct: 6 PEFLKAGKEPGLQIWRVEKFDLVPVPTNLYGDFFTGDAYVILKTVQLRNGNLQYDLHYWL 65
Query: 70 GKDTSQDEAGTAAIKTVELDAVLGGRAVQHRELQGHESDKFLSYFKPCIIPLEGGVASGF 129
G + SQDE+G AAI TV+LD L GRAVQHRE+QG ES FL YFK + +GGVASGF
Sbjct: 66 GNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGGVASGF 125
Query: 130 R 130
+
Sbjct: 126 K 126
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 59/123 (47%), Gaps = 3/123 (2%)
Query: 383 EVPPLLEGGGK--MEVWRINGSAKTSLPKEDIGKFYSGDCYIVLYTYHSGDRKEDYFLCC 440
E P L+ G + +++WR+ +P G F++GD Y++L T + Y L
Sbjct: 4 EHPEFLKAGKEPGLQIWRVEKFDLVPVPTNLYGDFFTGDAYVILKTVQLRNGNLQYDLHY 63
Query: 441 WFGKDSIEEDQKMATRLANTMCNSLKGRPVQGRIFQGREPPQFVALFQP-MVVVKGGLCS 499
W G + +++ A + + L GR VQ R QG E F+ F+ + KGG+ S
Sbjct: 64 WLGNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGGVAS 123
Query: 500 GYK 502
G+K
Sbjct: 124 GFK 126
>pdb|2FF3|A Chain A, Crystal Structure Of Gelsolin Domain 1:n-Wasp V2 Motif
Hybrid In Complex With Actin
pdb|2FF6|G Chain G, Crystal Structure Of Gelsolin Domain 1:ciboulot Domain 2
Hybrid In Complex With Actin
Length = 150
Score = 135 bits (341), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 63/123 (51%), Positives = 84/123 (68%)
Query: 10 PAFQGAGQRVGTEIWRIENFQPVPLPKSEHGKFYMGDCYIVLQTTPGKGGAYLYDIHFWI 69
P F AG+ G +IWR+E F VP+P + +G F+ GD Y++L+T + G YD+H+W+
Sbjct: 28 PEFLKAGKEPGLQIWRVEKFDLVPVPTNLYGDFFTGDAYVILKTVQLRNGNLQYDLHYWL 87
Query: 70 GKDTSQDEAGTAAIKTVELDAVLGGRAVQHRELQGHESDKFLSYFKPCIIPLEGGVASGF 129
G + SQDE+G AAI TV+LD L GRAVQHRE+QG ES FL YFK + +GGVASGF
Sbjct: 88 GNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGGVASGF 147
Query: 130 RKT 132
+
Sbjct: 148 KHV 150
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 59/123 (47%), Gaps = 3/123 (2%)
Query: 383 EVPPLLEGGGK--MEVWRINGSAKTSLPKEDIGKFYSGDCYIVLYTYHSGDRKEDYFLCC 440
E P L+ G + +++WR+ +P G F++GD Y++L T + Y L
Sbjct: 26 EHPEFLKAGKEPGLQIWRVEKFDLVPVPTNLYGDFFTGDAYVILKTVQLRNGNLQYDLHY 85
Query: 441 WFGKDSIEEDQKMATRLANTMCNSLKGRPVQGRIFQGREPPQFVALFQP-MVVVKGGLCS 499
W G + +++ A + + L GR VQ R QG E F+ F+ + KGG+ S
Sbjct: 86 WLGNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGGVAS 145
Query: 500 GYK 502
G+K
Sbjct: 146 GFK 148
>pdb|1YAG|G Chain G, Structure Of The Yeast Actin-human Gelsolin Segment 1
Complex
pdb|1YVN|G Chain G, The Yeast Actin Val 159 Asn Mutant Complex With Human
Gelsolin Segment 1.
pdb|1MDU|A Chain A, Crystal Structure Of The Chicken Actin Trimer Complexed
With Human Gelsolin Segment 1 (Gs-1)
pdb|1MDU|D Chain D, Crystal Structure Of The Chicken Actin Trimer Complexed
With Human Gelsolin Segment 1 (Gs-1)
pdb|1NLV|G Chain G, Crystal Structure Of Dictyostelium Discoideum Actin
Complexed With Ca Atp And Human Gelsolin Segment 1
pdb|1NM1|G Chain G, Crystal Structure Of D. Dicsoideum Actin Complexed With
Gelsolin Segment 1 And Mg Atp At 1.8 A Resolution
pdb|1NMD|G Chain G, Crystal Structure Of D. Discoideum Actin-Gelsolin Segment
1 Complex Crystallized In Presence Of Lithium Atp
pdb|3CJB|G Chain G, Actin Dimer Cross-Linked By V. Cholerae Martx Toxin And
Complexed With Gelsolin-Segment 1
pdb|3CJC|G Chain G, Actin Dimer Cross-Linked By V. Cholerae Martx Toxin And
Complexed With Dnase I And Gelsolin-Segment 1
Length = 125
Score = 135 bits (341), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 63/120 (52%), Positives = 83/120 (69%)
Query: 10 PAFQGAGQRVGTEIWRIENFQPVPLPKSEHGKFYMGDCYIVLQTTPGKGGAYLYDIHFWI 69
P F AG+ G +IWR+E F VP+P + +G F+ GD Y++L+T + G YD+H+W+
Sbjct: 6 PEFLKAGKEPGLQIWRVEKFDLVPVPTNLYGDFFTGDAYVILKTVQLRNGNLQYDLHYWL 65
Query: 70 GKDTSQDEAGTAAIKTVELDAVLGGRAVQHRELQGHESDKFLSYFKPCIIPLEGGVASGF 129
G + SQDE+G AAI TV+LD L GRAVQHRE+QG ES FL YFK + +GGVASGF
Sbjct: 66 GNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGGVASGF 125
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 3/122 (2%)
Query: 383 EVPPLLEGGGK--MEVWRINGSAKTSLPKEDIGKFYSGDCYIVLYTYHSGDRKEDYFLCC 440
E P L+ G + +++WR+ +P G F++GD Y++L T + Y L
Sbjct: 4 EHPEFLKAGKEPGLQIWRVEKFDLVPVPTNLYGDFFTGDAYVILKTVQLRNGNLQYDLHY 63
Query: 441 WFGKDSIEEDQKMATRLANTMCNSLKGRPVQGRIFQGREPPQFVALFQP-MVVVKGGLCS 499
W G + +++ A + + L GR VQ R QG E F+ F+ + KGG+ S
Sbjct: 64 WLGNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGGVAS 123
Query: 500 GY 501
G+
Sbjct: 124 GF 125
>pdb|2VIK|A Chain A, Refined Structure Of The Actin-Severing Domain Villin 14t,
Determined By Solution Nmr, Minimized Average Structure
pdb|2VIL|A Chain A, Refined Structure Of The Actin-Severing Domain Villin 14t,
Determined By Solution Nmr, 11 Structures
Length = 126
Score = 135 bits (340), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 60/111 (54%), Positives = 80/111 (72%), Gaps = 1/111 (0%)
Query: 20 GTEIWRIENFQPVPLPKSEHGKFYMGDCYIVLQTTPGKGGAYLYDIHFWIGKDTSQDEAG 79
G +IWRIEN + VP+P +G FY GDCY++L T G + Y+IH+W+GK++SQDE G
Sbjct: 17 GIQIWRIENMEMVPVPTKSYGNFYEGDCYVLLSTRK-TGSGFSYNIHYWLGKNSSQDEQG 75
Query: 80 TAAIKTVELDAVLGGRAVQHRELQGHESDKFLSYFKPCIIPLEGGVASGFR 130
AAI T ++D LG AVQHRE+QGHES+ F +YFK +I +GGVASG +
Sbjct: 76 AAAIYTTQMDEYLGSVAVQHREVQGHESETFRAYFKQGLIYKQGGVASGMK 126
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 55/110 (50%), Gaps = 2/110 (1%)
Query: 394 MEVWRINGSAKTSLPKEDIGKFYSGDCYIVLYTYHSGDRKEDYFLCCWFGKDSIEEDQKM 453
+++WRI +P + G FY GDCY++L T +G Y + W GK+S +++Q
Sbjct: 18 IQIWRIENMEMVPVPTKSYGNFYEGDCYVLLSTRKTGS-GFSYNIHYWLGKNSSQDEQGA 76
Query: 454 ATRLANTMCNSLKGRPVQGRIFQGREPPQFVALF-QPMVVVKGGLCSGYK 502
A M L VQ R QG E F A F Q ++ +GG+ SG K
Sbjct: 77 AAIYTTQMDEYLGSVAVQHREVQGHESETFRAYFKQGLIYKQGGVASGMK 126
>pdb|3CI5|G Chain G, Complex Of Phosphorylated Dictyostelium Discoideum Actin
With Gelsolin
Length = 126
Score = 135 bits (340), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 63/120 (52%), Positives = 83/120 (69%)
Query: 10 PAFQGAGQRVGTEIWRIENFQPVPLPKSEHGKFYMGDCYIVLQTTPGKGGAYLYDIHFWI 69
P F AG+ G +IWR+E F VP+P + +G F+ GD Y++L+T + G YD+H+W+
Sbjct: 7 PEFLKAGKEPGLQIWRVEKFDLVPVPTNLYGDFFTGDAYVILKTVQLRNGNLQYDLHYWL 66
Query: 70 GKDTSQDEAGTAAIKTVELDAVLGGRAVQHRELQGHESDKFLSYFKPCIIPLEGGVASGF 129
G + SQDE+G AAI TV+LD L GRAVQHRE+QG ES FL YFK + +GGVASGF
Sbjct: 67 GNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGGVASGF 126
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 3/122 (2%)
Query: 383 EVPPLLEGGGK--MEVWRINGSAKTSLPKEDIGKFYSGDCYIVLYTYHSGDRKEDYFLCC 440
E P L+ G + +++WR+ +P G F++GD Y++L T + Y L
Sbjct: 5 EHPEFLKAGKEPGLQIWRVEKFDLVPVPTNLYGDFFTGDAYVILKTVQLRNGNLQYDLHY 64
Query: 441 WFGKDSIEEDQKMATRLANTMCNSLKGRPVQGRIFQGREPPQFVALFQP-MVVVKGGLCS 499
W G + +++ A + + L GR VQ R QG E F+ F+ + KGG+ S
Sbjct: 65 WLGNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGGVAS 124
Query: 500 GY 501
G+
Sbjct: 125 GF 126
>pdb|3CIP|G Chain G, Complex Of Dictyostelium Discoideum Actin With Gelsolin
Length = 128
Score = 135 bits (339), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 63/120 (52%), Positives = 83/120 (69%)
Query: 10 PAFQGAGQRVGTEIWRIENFQPVPLPKSEHGKFYMGDCYIVLQTTPGKGGAYLYDIHFWI 69
P F AG+ G +IWR+E F VP+P + +G F+ GD Y++L+T + G YD+H+W+
Sbjct: 9 PEFLKAGKEPGLQIWRVEKFDLVPVPTNLYGDFFTGDAYVILKTVQLRNGNLQYDLHYWL 68
Query: 70 GKDTSQDEAGTAAIKTVELDAVLGGRAVQHRELQGHESDKFLSYFKPCIIPLEGGVASGF 129
G + SQDE+G AAI TV+LD L GRAVQHRE+QG ES FL YFK + +GGVASGF
Sbjct: 69 GNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGGVASGF 128
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 3/122 (2%)
Query: 383 EVPPLLEGGGK--MEVWRINGSAKTSLPKEDIGKFYSGDCYIVLYTYHSGDRKEDYFLCC 440
E P L+ G + +++WR+ +P G F++GD Y++L T + Y L
Sbjct: 7 EHPEFLKAGKEPGLQIWRVEKFDLVPVPTNLYGDFFTGDAYVILKTVQLRNGNLQYDLHY 66
Query: 441 WFGKDSIEEDQKMATRLANTMCNSLKGRPVQGRIFQGREPPQFVALFQP-MVVVKGGLCS 499
W G + +++ A + + L GR VQ R QG E F+ F+ + KGG+ S
Sbjct: 67 WLGNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGGVAS 126
Query: 500 GY 501
G+
Sbjct: 127 GF 128
>pdb|1C0F|S Chain S, Crystal Structure Of Dictyostelium Caatp-Actin In Complex
With Gelsolin Segment 1
pdb|1C0G|S Chain S, Crystal Structure Of 1:1 Complex Between Gelsolin Segment
1 And A DictyosteliumTETRAHYMENA CHIMERA ACTIN (MUTANT
228: Q228kT229AA230YE360H)
pdb|1DEJ|S Chain S, Crystal Structure Of A DictyosteliumTETRAHYMENA CHIMERA
Actin (Mutant 646: Q228kT229AA230YA231KS232EE360H) IN
Complex With Human Gelsolin Segment 1
pdb|3A5L|S Chain S, Crystal Structure Of A Dictyostelium P109a Mg2+-Actin In
Complex With Human Gelsolin Segment 1
pdb|3A5M|S Chain S, Crystal Structure Of A Dictyostelium P109i Mg2+-Actin In
Complex With Human Gelsolin Segment 1
pdb|3A5N|S Chain S, Crystal Structure Of A Dictyostelium P109a Ca2+-Actin In
Complex With Human Gelsolin Segment 1
pdb|3A5O|S Chain S, Crystal Structure Of A Dictyostelium P109i Ca2+-Actin In
Complex With Human Gelsolin Segment 1
Length = 127
Score = 134 bits (338), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 63/120 (52%), Positives = 82/120 (68%)
Query: 10 PAFQGAGQRVGTEIWRIENFQPVPLPKSEHGKFYMGDCYIVLQTTPGKGGAYLYDIHFWI 69
P F AG+ G +IWR+E F VP+P +G F+ GD Y++L+T + G YD+H+W+
Sbjct: 8 PEFLKAGKEPGLQIWRVEKFDLVPVPTCLYGDFFTGDAYVILKTVQLRNGNLQYDLHYWL 67
Query: 70 GKDTSQDEAGTAAIKTVELDAVLGGRAVQHRELQGHESDKFLSYFKPCIIPLEGGVASGF 129
G + SQDE+G AAI TV+LD L GRAVQHRE+QG ES FL YFK + +GGVASGF
Sbjct: 68 GNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGGVASGF 127
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 3/122 (2%)
Query: 383 EVPPLLEGGGK--MEVWRINGSAKTSLPKEDIGKFYSGDCYIVLYTYHSGDRKEDYFLCC 440
E P L+ G + +++WR+ +P G F++GD Y++L T + Y L
Sbjct: 6 EHPEFLKAGKEPGLQIWRVEKFDLVPVPTCLYGDFFTGDAYVILKTVQLRNGNLQYDLHY 65
Query: 441 WFGKDSIEEDQKMATRLANTMCNSLKGRPVQGRIFQGREPPQFVALFQP-MVVVKGGLCS 499
W G + +++ A + + L GR VQ R QG E F+ F+ + KGG+ S
Sbjct: 66 WLGNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGGVAS 125
Query: 500 GY 501
G+
Sbjct: 126 GF 127
>pdb|1EQY|S Chain S, Complex Between Rabbit Muscle Alpha-Actin: Human Gelsolin
Domain 1
pdb|1ESV|S Chain S, Complex Between Latrunculin A:rabbit Muscle Alpha
Actin:human Gelsolin Domain 1
Length = 125
Score = 134 bits (338), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 63/120 (52%), Positives = 82/120 (68%)
Query: 10 PAFQGAGQRVGTEIWRIENFQPVPLPKSEHGKFYMGDCYIVLQTTPGKGGAYLYDIHFWI 69
P F AG+ G +IWR+E F VP+P +G F+ GD Y++L+T + G YD+H+W+
Sbjct: 6 PEFLKAGKEPGLQIWRVEKFDLVPVPTCLYGDFFTGDAYVILKTVQLRNGNLQYDLHYWL 65
Query: 70 GKDTSQDEAGTAAIKTVELDAVLGGRAVQHRELQGHESDKFLSYFKPCIIPLEGGVASGF 129
G + SQDE+G AAI TV+LD L GRAVQHRE+QG ES FL YFK + +GGVASGF
Sbjct: 66 GNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGGVASGF 125
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 3/122 (2%)
Query: 383 EVPPLLEGGGK--MEVWRINGSAKTSLPKEDIGKFYSGDCYIVLYTYHSGDRKEDYFLCC 440
E P L+ G + +++WR+ +P G F++GD Y++L T + Y L
Sbjct: 4 EHPEFLKAGKEPGLQIWRVEKFDLVPVPTCLYGDFFTGDAYVILKTVQLRNGNLQYDLHY 63
Query: 441 WFGKDSIEEDQKMATRLANTMCNSLKGRPVQGRIFQGREPPQFVALFQP-MVVVKGGLCS 499
W G + +++ A + + L GR VQ R QG E F+ F+ + KGG+ S
Sbjct: 64 WLGNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGGVAS 123
Query: 500 GY 501
G+
Sbjct: 124 GF 125
>pdb|1SVY|A Chain A, Severin Domain 2, 1.75 Angstrom Crystal Structure
Length = 114
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 58/118 (49%), Gaps = 6/118 (5%)
Query: 127 SGFRKTXXXXXXTRLYVCKGKRVVRMKQVPFARSSLNHDDVFILDTKDKIYQFNGANSNI 186
SGF RL G + ++ +VP A SSLN D F+LD IYQFNG+ S+
Sbjct: 1 SGFNHVKPTEYKPRLLHISGDKNAKVAEVPLATSSLNSGDCFLLDAGLTIYQFNGSKSSP 60
Query: 187 QERAKALEVIQFLKEKYHDGNCNVAIVDDGKLDTESD-SGEFWVLFGGFAPIGKKVAT 243
QE+ KA EV + + + G V + +T+SD EFW L GG I K T
Sbjct: 61 QEKNKAAEVARAI-DAERKGLPKVEVFX----ETDSDIPAEFWKLLGGKGAIAAKHET 113
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 54/98 (55%), Gaps = 8/98 (8%)
Query: 522 LIRISGTSIHNNKTEQVDAVATSLNSSECFLLQSGSTMFTWHGNQSTFEQQQLAAKVAEF 581
L+ ISG N K +V +SLNS +CFLL +G T++ ++G++S+ +++ AA+VA
Sbjct: 15 LLHISGDK--NAKVAEVPLATSSLNSGDCFLLDAGLTIYQFNGSKSSPQEKNKAAEVARA 72
Query: 582 LK------PGVAIKHAKEGTESSAFWFPLGGKQSYTSK 613
+ P V + + + FW LGGK + +K
Sbjct: 73 IDAERKGLPKVEVFXETDSDIPAEFWKLLGGKGAIAAK 110
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 254 PKLYSIE-DSQVKIVEGELSKSMLENNKCYLLDRGSEVFVWVGRVTQVEERKAASQAA 310
P+L I D K+ E L+ S L + C+LLD G ++ + G + +E+ A++ A
Sbjct: 13 PRLLHISGDKNAKVAEVPLATSSLNSGDCFLLDAGLTIYQFNGSKSSPQEKNKAAEVA 70
>pdb|1SVQ|A Chain A, Structure Of Severin Domain 2 In Solution
pdb|1SVR|A Chain A, Structure Of Severin Domain 2 In Solution
Length = 114
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 58/118 (49%), Gaps = 6/118 (5%)
Query: 127 SGFRKTXXXXXXTRLYVCKGKRVVRMKQVPFARSSLNHDDVFILDTKDKIYQFNGANSNI 186
SGF RL G + ++ +VP A SSLN D F+LD IYQFNG+ S+
Sbjct: 1 SGFNHVKPTEYKPRLLHISGDKNAKVAEVPLATSSLNSGDCFLLDAGLTIYQFNGSKSSP 60
Query: 187 QERAKALEVIQFLKEKYHDGNCNVAIVDDGKLDTESD-SGEFWVLFGGFAPIGKKVAT 243
QE+ KA EV + + + G V + +T+SD EFW L GG I K T
Sbjct: 61 QEKNKAAEVARAI-DAERKGLPKVEVF----CETDSDIPAEFWKLLGGKGAIAAKHET 113
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 54/98 (55%), Gaps = 8/98 (8%)
Query: 522 LIRISGTSIHNNKTEQVDAVATSLNSSECFLLQSGSTMFTWHGNQSTFEQQQLAAKVAEF 581
L+ ISG N K +V +SLNS +CFLL +G T++ ++G++S+ +++ AA+VA
Sbjct: 15 LLHISGDK--NAKVAEVPLATSSLNSGDCFLLDAGLTIYQFNGSKSSPQEKNKAAEVARA 72
Query: 582 LK------PGVAIKHAKEGTESSAFWFPLGGKQSYTSK 613
+ P V + + + FW LGGK + +K
Sbjct: 73 IDAERKGLPKVEVFCETDSDIPAEFWKLLGGKGAIAAK 110
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 254 PKLYSIE-DSQVKIVEGELSKSMLENNKCYLLDRGSEVFVWVGRVTQVEERKAASQAA 310
P+L I D K+ E L+ S L + C+LLD G ++ + G + +E+ A++ A
Sbjct: 13 PRLLHISGDKNAKVAEVPLATSSLNSGDCFLLDAGLTIYQFNGSKSSPQEKNKAAEVA 70
>pdb|1KCQ|A Chain A, Human Gelsolin Domain 2 With A Cd2+ Bound
Length = 104
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 48/77 (62%)
Query: 140 RLYVCKGKRVVRMKQVPFARSSLNHDDVFILDTKDKIYQFNGANSNIQERAKALEVIQFL 199
RL+ KG+RVVR +VP + S N+ D FILD + I+Q+ G+NSN ER KA +V + +
Sbjct: 4 RLFQVKGRRVVRATEVPVSWESFNNGDCFILDLGNNIHQWCGSNSNRYERLKATQVSKGI 63
Query: 200 KEKYHDGNCNVAIVDDG 216
++ G V + ++G
Sbjct: 64 RDNERSGRARVHVSEEG 80
Score = 33.9 bits (76), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 544 SLNSSECFLLQSGSTMFTWHGNQSTFEQQQLAAKVAEFL----KPGVAIKH-AKEGTESS 598
S N+ +CF+L G+ + W G+ S ++ A +V++ + + G A H ++EGTE
Sbjct: 25 SFNNGDCFILDLGNNIHQWCGSNSNRYERLKATQVSKGIRDNERSGRARVHVSEEGTEPE 84
Query: 599 AFWFPLGGK 607
A LG K
Sbjct: 85 AMLQVLGPK 93
Score = 30.0 bits (66), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 255 KLYSIEDSQV-KIVEGELSKSMLENNKCYLLDRGSEVFVWVGRVTQVEERKAASQAAE 311
+L+ ++ +V + E +S N C++LD G+ + W G + ER A+Q ++
Sbjct: 4 RLFQVKGRRVVRATEVPVSWESFNNGDCFILDLGNNIHQWCGSNSNRYERLKATQVSK 61
>pdb|2RJV|A Chain A, Crystal Structure Of The H41y Mutant Of Villin Headpiece,
P 21 21 21 Space Group
pdb|2RJW|A Chain A, The Crystal Structure Of The H41y Mutant Of Villin
Headpiece, P61 Space Group.
pdb|2RJW|B Chain B, The Crystal Structure Of The H41y Mutant Of Villin
Headpiece, P61 Space Group
Length = 67
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 919 TSRSTFSYDQL--KARSDNPVTGIDFKRREAYLSDEEFQTVFGMMKEAFYKLPKWKQDMQ 976
T TF D L A D P G+D R+E YLSDE+F+ VFGM + AF LP WKQ
Sbjct: 2 TKLETFPLDVLVNTAAEDLP-RGVDPSRKENYLSDEDFKAVFGMTRSAFANLPLWKQQNL 60
Query: 977 KKKFDLF 983
KK+ LF
Sbjct: 61 KKEKGLF 67
>pdb|1YU5|X Chain X, Crystal Structure Of The Headpiece Domain Of Chicken
Villin
pdb|2RJY|A Chain A, Crystal Structure Of Villin Headpiece, P21 21 21 Space
Group
pdb|2RJX|A Chain A, Crystal Structure Of The Headpiece Domain Of Chicken
Villin, P61 Space Group
pdb|2RJX|B Chain B, Crystal Structure Of The Headpiece Domain Of Chicken
Villin, P61 Space Group
pdb|1QQV|A Chain A, Solution Structure Of The Headpiece Domain Of Chicken
Villin
Length = 67
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 919 TSRSTFSYDQL--KARSDNPVTGIDFKRREAYLSDEEFQTVFGMMKEAFYKLPKWKQDMQ 976
T TF D L A D P G+D R+E +LSDE+F+ VFGM + AF LP WKQ
Sbjct: 2 TKLETFPLDVLVNTAAEDLP-RGVDPSRKENHLSDEDFKAVFGMTRSAFANLPLWKQQNL 60
Query: 977 KKKFDLF 983
KK+ LF
Sbjct: 61 KKEKGLF 67
>pdb|3MYC|A Chain A, Crystal Structure Of Hp67 H41f - P212121
pdb|3MYA|A Chain A, Crystal Structure Of Hp67 H41f - P61
pdb|3MYA|B Chain B, Crystal Structure Of Hp67 H41f - P61
Length = 67
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 919 TSRSTFSYDQL--KARSDNPVTGIDFKRREAYLSDEEFQTVFGMMKEAFYKLPKWKQDMQ 976
T TF D L A D P G+D R+E +LSDE+F+ VFGM + AF LP WKQ
Sbjct: 2 TKLETFPLDVLVNTAAEDLP-RGVDPSRKENFLSDEDFKAVFGMTRSAFANLPLWKQQNL 60
Query: 977 KKKFDLF 983
KK+ LF
Sbjct: 61 KKEKGLF 67
>pdb|1YU8|X Chain X, Crystal Structure Of The R37a Mutant Of Villin Headpiece
Length = 67
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 919 TSRSTFSYDQL--KARSDNPVTGIDFKRREAYLSDEEFQTVFGMMKEAFYKLPKWKQDMQ 976
T TF D L A D P G+D +E +LSDE+F+ VFGM + AF LP WKQ
Sbjct: 2 TKLETFPLDVLVNTAAEDLP-RGVDPSAKENHLSDEDFKAVFGMTRSAFANLPLWKQQNL 60
Query: 977 KKKFDLF 983
KK+ LF
Sbjct: 61 KKEKGLF 67
>pdb|1YU7|X Chain X, Crystal Structure Of The W64y Mutant Of Villin Headpiece
Length = 67
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 919 TSRSTFSYDQL--KARSDNPVTGIDFKRREAYLSDEEFQTVFGMMKEAFYKLPKWKQDMQ 976
T TF D L A D P G+D R+E +LSDE+F+ VFGM + AF LP +KQ
Sbjct: 2 TKLETFPLDVLVNTAAEDLP-RGVDPSRKENHLSDEDFKAVFGMTRSAFANLPLYKQQNL 60
Query: 977 KKKFDLF 983
KK+ LF
Sbjct: 61 KKEKGLF 67
>pdb|2LLF|A Chain A, Sixth Gelsolin-like Domain Of Villin In 5 Mm Cacl2
Length = 107
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 254 PKLYSIEDSQVKIVEGEL---SKSMLENNKCYLLDRGSEVFVWVGRVTQVEERKAASQAA 310
P+L+ + + + E+ ++ L+ N YLLD ++F W+G+ E++AA++ A
Sbjct: 1 PRLFECSNKTGRFLATEIVDFTQDDLDENDVYLLDTWDQIFFWIGKGANESEKEAAAETA 60
Query: 311 EEFISSQ--NRPKSIRITRVIQGYETYAFKSNFDSW 344
+E++ S +R I V QG+E F F +W
Sbjct: 61 QEYLRSHPGSRDLDTPIIVVKQGFEPPTFTGWFMAW 96
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 43/100 (43%), Gaps = 3/100 (3%)
Query: 623 PHLFTFSFNKGAFQVEEVYNFSQXXXXXXXXXXXXXHAEVFVWVGQSVDSKEKQSAFEFG 682
P LF S G F E+ +F+Q ++F W+G+ + EK++A E
Sbjct: 1 PRLFECSNKTGRFLATEIVDFTQDDLDENDVYLLDTWDQIFFWIGKGANESEKEAAAETA 60
Query: 683 QNYIDMATSLEGLSPKVPLYKVTEGNE-PCFCTTFFSWDP 721
Q Y+ L P+ V +G E P F F +WDP
Sbjct: 61 QEYLRSHPGSRDLD--TPIIVVKQGFEPPTFTGWFMAWDP 98
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 140 RLYVCKGK--RVVRMKQVPFARSSLNHDDVFILDTKDKIYQFNGANSNIQERAKALEVIQ 197
RL+ C K R + + V F + L+ +DV++LDT D+I+ + G +N E+ A E Q
Sbjct: 2 RLFECSNKTGRFLATEIVDFTQDDLDENDVYLLDTWDQIFFWIGKGANESEKEAAAETAQ 61
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 10/90 (11%)
Query: 535 TEQVDAVATSLNSSECFLLQSGSTMFTWHGNQSTFEQQQLAAKVA-EFLK--PG-----V 586
TE VD L+ ++ +LL + +F W G + +++ AA+ A E+L+ PG
Sbjct: 16 TEIVDFTQDDLDENDVYLLDTWDQIFFWIGKGANESEKEAAAETAQEYLRSHPGSRDLDT 75
Query: 587 AIKHAKEGTESSAF--WFPLGGKQSYTSKK 614
I K+G E F WF ++ +K
Sbjct: 76 PIIVVKQGFEPPTFTGWFMAWDPLCWSDRK 105
>pdb|3NKJ|A Chain A, Crystal Structure Of Hp67 L61g
Length = 67
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 919 TSRSTFSYDQL--KARSDNPVTGIDFKRREAYLSDEEFQTVFGMMKEAFYKLPKWKQDMQ 976
T TF D L A D P G+D R+E +LSDE+F+ VFGM + AF P WKQ
Sbjct: 2 TKLETFPLDVLVNTAAEDLP-RGVDPSRKENHLSDEDFKAVFGMTRSAFANGPLWKQQNL 60
Query: 977 KKKFDLF 983
KK+ LF
Sbjct: 61 KKEKGLF 67
>pdb|3MYE|X Chain X, Crystal Structure Of Hp67 L61gl
Length = 68
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 919 TSRSTFSYDQL--KARSDNPVTGIDFKRREAYLSDEEFQTVFGMMKEAFYK-LPKWKQDM 975
T TF D L A D P G+D R+E +LSDE+F+ VFGM + AF LP WKQ
Sbjct: 2 TKLETFPLDVLVNTAAEDLP-RGVDPSRKENHLSDEDFKAVFGMTRSAFANGLPLWKQQN 60
Query: 976 QKKKFDLF 983
KK+ LF
Sbjct: 61 LKKEKGLF 68
>pdb|1ZV6|A Chain A, Nmr Structure Of The Human Dematin Headpiece S74e Mutant
Length = 68
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/54 (46%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 930 KARSDNPVTGIDFKRREAYLSDEEFQTVFGMMKEAFYKLPKWKQDMQKKKFDLF 983
K R+ P G+D R E +LS E+F VF M E F KL WK++ KKK +LF
Sbjct: 16 KGRTKLP-PGVDRMRLERHLSAEDFSRVFAMSPEEFGKLALWKRNELKKKAELF 68
>pdb|2L3X|A Chain A, Villin Head Piece Domain Of Human Ablim2
Length = 67
Score = 44.3 bits (103), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/44 (52%), Positives = 28/44 (63%)
Query: 940 IDFKRREAYLSDEEFQTVFGMMKEAFYKLPKWKQDMQKKKFDLF 983
+D R E +LS EEFQ VFGM E F +L WK++ KKK LF
Sbjct: 24 VDRTRLERHLSPEEFQEVFGMSIEEFDRLALWKRNDLKKKALLF 67
>pdb|1QZP|A Chain A, Nmr Structure Of The Human Dematin Headpiece Domain
Length = 68
Score = 43.9 bits (102), Expect = 4e-04, Method: Composition-based stats.
Identities = 25/54 (46%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 930 KARSDNPVTGIDFKRREAYLSDEEFQTVFGMMKEAFYKLPKWKQDMQKKKFDLF 983
K R+ P G+D R E +LS E+F VF M E F KL WK++ KKK LF
Sbjct: 16 KGRTKLP-PGVDRMRLERHLSAEDFSRVFAMSPEEFGKLALWKRNELKKKASLF 68
>pdb|2PPZ|A Chain A, Nmr Solution Structure Of The Villin Headpiece Mutant G34l
Length = 36
Score = 43.1 bits (100), Expect = 8e-04, Method: Composition-based stats.
Identities = 20/35 (57%), Positives = 24/35 (68%)
Query: 949 LSDEEFQTVFGMMKEAFYKLPKWKQDMQKKKFDLF 983
LSDE+F+ VFGM + AF LP WKQ KK+ LF
Sbjct: 2 LSDEDFKAVFGMTRSAFANLPLWKQQNLKKEKLLF 36
>pdb|1YRF|A Chain A, Chicken Villin Subdomain Hp-35, N68h, Ph6.7
pdb|1YRI|A Chain A, Chicken Villin Subdomain Hp-35, N68h, Ph6.4
Length = 35
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 24/35 (68%)
Query: 949 LSDEEFQTVFGMMKEAFYKLPKWKQDMQKKKFDLF 983
LSDE+F+ VFGM + AF LP WKQ KK+ LF
Sbjct: 1 LSDEDFKAVFGMTRSAFANLPLWKQQHLKKEKGLF 35
>pdb|1VII|A Chain A, Thermostable Subdomain From Chicken Villin Headpiece, Nmr,
Minimized Average Structure
Length = 36
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 24/35 (68%)
Query: 949 LSDEEFQTVFGMMKEAFYKLPKWKQDMQKKKFDLF 983
LSDE+F+ VFGM + AF LP WKQ KK+ LF
Sbjct: 2 LSDEDFKAVFGMTRSAFANLPLWKQQNLKKEKGLF 36
>pdb|2K6M|S Chain S, Solution Structure Of Human Supervillin Headpiece
pdb|2K6N|A Chain A, Solution Structure Of Human Supervillin Headpiece,
Minimized Average
Length = 67
Score = 40.0 bits (92), Expect = 0.006, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 939 GIDFKRREAYLSDEEFQTVFGMMKEAFYKLPKWKQDMQKKKFDLF 983
G+D + E YL+DE+F+ M ++ + LP WKQ KK LF
Sbjct: 23 GVDPLKLEIYLTDEDFEFALDMTRDEYNALPAWKQVNLKKAKGLF 67
>pdb|1WY3|A Chain A, Chicken Villin Subdomain Hp-35, K65(Nle), N68h, Ph7.0
pdb|1WY4|A Chain A, Chicken Villin Subdomain Hp-35, K65(nle), N68h, Ph5.1
Length = 35
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 23/35 (65%)
Query: 949 LSDEEFQTVFGMMKEAFYKLPKWKQDMQKKKFDLF 983
LSDE+F+ VFGM + AF LP W Q KK+ LF
Sbjct: 1 LSDEDFKAVFGMTRSAFANLPLWXQQHLKKEKGLF 35
>pdb|1UJS|A Chain A, Solution Structure Of The Villin Headpiece Domain Of Human
Actin-Binding Lim Protein Homologue (Kiaa0843 Protein)
Length = 88
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 26/44 (59%)
Query: 940 IDFKRREAYLSDEEFQTVFGMMKEAFYKLPKWKQDMQKKKFDLF 983
+D R E +LS EEF VFGM F +L WK++ KK+ LF
Sbjct: 39 VDRTRLERHLSQEEFYQVFGMTISEFDRLALWKRNELKKQARLF 82
>pdb|2JM0|A Chain A, Solution Structure Of Chicken Villin Headpiece Subdomain
Containing A Fluorinated Side Chain In The Core
Length = 35
Score = 38.5 bits (88), Expect = 0.016, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 949 LSDEEFQTVFGMMKEAFYKLPKWKQDMQKKKFDLF 983
LSDE+F+ V GM + AF LP W+Q +++ LF
Sbjct: 1 LSDEDFRAVXGMTRSAFANLPLWRQQNLRRERGLF 35
>pdb|3TRV|A Chain A, Crystal Structure Of Quasiracemic Villin Headpiece
Subdomain Containing (F5phe17) Substitution
Length = 35
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 23/35 (65%)
Query: 949 LSDEEFQTVFGMMKEAFYKLPKWKQDMQKKKFDLF 983
LSDE+F+ VFGM + A LP WKQ KK+ LF
Sbjct: 1 LSDEDFKAVFGMTRSAXANLPLWKQQHLKKEKGLF 35
>pdb|2F4K|A Chain A, Chicken Villin Subdomain Hp-35, K65(Nle), N68h, K70(Nle),
Ph9
Length = 35
Score = 37.7 bits (86), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 22/35 (62%)
Query: 949 LSDEEFQTVFGMMKEAFYKLPKWKQDMQKKKFDLF 983
LSDE+F+ VFGM + AF LP W Q K+ LF
Sbjct: 1 LSDEDFKAVFGMTRSAFANLPLWXQQHLXKEKGLF 35
>pdb|3TJW|B Chain B, Crystal Structure Of Quasiracemic Villin Headpiece
Subdomain Containing (F5phe10) Substitution
Length = 34
Score = 37.0 bits (84), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 949 LSDEEFQTVFGMMKEAFYKLPKWKQDMQKK 978
LSDE+F+ V GM + AF LP WKQ KK
Sbjct: 1 LSDEDFKAVXGMTRSAFANLPLWKQQHLKK 30
>pdb|3TRW|A Chain A, Crystal Structure Of Racemic Villin Headpiece Subdomain
Crystallized In Space Group P-1
pdb|3TRW|D Chain D, Crystal Structure Of Racemic Villin Headpiece Subdomain
Crystallized In Space Group P-1
Length = 35
Score = 36.6 bits (83), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 23/35 (65%)
Query: 949 LSDEEFQTVFGMMKEAFYKLPKWKQDMQKKKFDLF 983
LSDE+F+ VFGM + AF LP KQ KK+ LF
Sbjct: 1 LSDEDFKAVFGMTRSAFANLPLAKQQHLKKEKGLF 35
>pdb|1UND|A Chain A, Solution Structure Of The Human Advillin C-Terminal
Headpiece Subdomain
Length = 37
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 948 YLSDEEFQTVFGMMKEAFYKLPKWKQDMQKKKFDLF 983
YLS+++F +VFG+ + F LP WKQ KK+ LF
Sbjct: 2 YLSEQDFVSVFGITRGQFAALPGWKQLQMKKEKGLF 37
>pdb|1UNC|A Chain A, Solution Structure Of The Human Villin C-Terminal
Headpiece Subdomain
Length = 36
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 21/35 (60%)
Query: 949 LSDEEFQTVFGMMKEAFYKLPKWKQDMQKKKFDLF 983
LS E+F FGM AF LP+WKQ KK+ LF
Sbjct: 2 LSIEDFTQAFGMTPAAFSALPRWKQQNLKKEKGLF 36
>pdb|1UB5|L Chain L, Crystal Structure Of Antibody 19g2 With Hapten At 100k
pdb|1UB5|B Chain B, Crystal Structure Of Antibody 19g2 With Hapten At 100k
Length = 214
Score = 30.0 bits (66), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 12/92 (13%)
Query: 381 NEEVPPLLEGGGKMEVWRINGSAKTSLPKEDIGKFYSGDCYIVLYTYH------------ 428
N E+PP GG K+E+ R + + S+ + SG +V + +
Sbjct: 96 NLELPPTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKI 155
Query: 429 SGDRKEDYFLCCWFGKDSIEEDQKMATRLANT 460
G +++ L W +DS + M++ L T
Sbjct: 156 DGSERQNGVLNSWTDQDSKDSTYSMSSTLTLT 187
>pdb|3CFB|L Chain L, High-Resolution Structure Of Blue Fluorescent Antibody
Ep2-19g2 In Complex With Stilbene Hapten At 100k
pdb|3CFB|A Chain A, High-Resolution Structure Of Blue Fluorescent Antibody
Ep2-19g2 In Complex With Stilbene Hapten At 100k
pdb|3CFC|L Chain L, High-Resolution Structure Of Blue Fluorescent Antibody
Ep2-19g2
Length = 219
Score = 29.6 bits (65), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 12/92 (13%)
Query: 381 NEEVPPLLEGGGKMEVWRINGSAKTSLPKEDIGKFYSGDCYIVLYTYH------------ 428
N E+PP GG K+E+ R + + S+ + SG +V + +
Sbjct: 96 NLELPPTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKI 155
Query: 429 SGDRKEDYFLCCWFGKDSIEEDQKMATRLANT 460
G +++ L W +DS + M++ L T
Sbjct: 156 DGSERQNGVLNSWTDQDSKDSTYSMSSTLTLT 187
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.131 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,709,196
Number of Sequences: 62578
Number of extensions: 1138678
Number of successful extensions: 2261
Number of sequences better than 100.0: 56
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2021
Number of HSP's gapped (non-prelim): 95
length of query: 983
length of database: 14,973,337
effective HSP length: 108
effective length of query: 875
effective length of database: 8,214,913
effective search space: 7188048875
effective search space used: 7188048875
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (26.2 bits)