Query 002004
Match_columns 983
No_of_seqs 358 out of 1368
Neff 6.4
Searched_HMMs 46136
Date Thu Mar 28 14:20:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002004.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002004hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0443 Actin regulatory prote 100.0 2E-221 3E-226 1891.1 73.5 817 1-983 1-827 (827)
2 KOG0444 Cytoskeletal regulator 100.0 3E-101 8E-106 863.3 18.8 688 14-724 496-1252(1255)
3 KOG0445 Actin regulatory prote 100.0 7.6E-96 2E-100 822.7 27.9 533 138-725 223-839 (919)
4 KOG0443 Actin regulatory prote 100.0 2.3E-62 5.1E-67 568.0 33.5 317 13-348 396-720 (827)
5 KOG0444 Cytoskeletal regulator 100.0 1.7E-48 3.6E-53 439.1 17.0 320 392-725 501-838 (1255)
6 KOG0445 Actin regulatory prote 100.0 2.1E-40 4.5E-45 374.9 17.3 332 20-399 524-886 (919)
7 PF02209 VHP: Villin headpiece 99.7 2.5E-17 5.5E-22 123.4 3.4 36 948-983 1-36 (36)
8 smart00153 VHP Villin headpiec 99.7 4.1E-17 8.9E-22 122.6 3.8 36 948-983 1-36 (36)
9 smart00262 GEL Gelsolin homolo 99.6 6.5E-16 1.4E-20 141.7 10.6 88 141-233 2-89 (90)
10 smart00262 GEL Gelsolin homolo 99.6 9.7E-16 2.1E-20 140.5 11.3 80 264-344 11-90 (90)
11 KOG1044 Actin-binding LIM Zn-f 99.5 9.9E-15 2.2E-19 166.0 3.5 63 921-983 605-670 (670)
12 PF00626 Gelsolin: Gelsolin re 99.3 2.2E-12 4.7E-17 114.2 6.2 69 269-338 8-76 (76)
13 PF00626 Gelsolin: Gelsolin re 99.3 4.4E-12 9.6E-17 112.2 6.7 74 150-228 3-76 (76)
14 COG5028 Vesicle coat complex C 96.5 0.0082 1.8E-07 72.6 8.8 117 621-740 708-857 (861)
15 KOG1984 Vesicle coat complex C 96.0 0.029 6.4E-07 68.7 10.1 111 621-738 857-998 (1007)
16 PTZ00395 Sec24-related protein 95.3 0.057 1.2E-06 69.4 9.5 116 621-740 1403-1551(1560)
17 KOG1984 Vesicle coat complex C 93.6 0.2 4.4E-06 61.8 8.3 66 270-336 882-973 (1007)
18 KOG1985 Vesicle coat complex C 92.7 0.17 3.6E-06 62.3 5.9 115 621-740 734-883 (887)
19 COG5028 Vesicle coat complex C 92.6 0.18 3.9E-06 61.6 5.9 66 270-335 737-828 (861)
20 PTZ00395 Sec24-related protein 92.2 0.33 7.2E-06 62.8 7.8 33 271-303 1436-1468(1560)
21 KOG1985 Vesicle coat complex C 81.0 1 2.2E-05 55.8 2.6 29 271-299 765-793 (887)
22 PLN00162 transport protein sec 78.1 5.7 0.00012 50.6 8.1 45 621-669 619-663 (761)
23 PLN00162 transport protein sec 69.3 15 0.00033 46.9 8.7 82 252-337 619-717 (761)
24 PF00241 Cofilin_ADF: Cofilin/ 58.6 35 0.00076 33.0 7.3 55 413-467 47-104 (127)
25 KOG3655 Drebrins and related a 54.0 27 0.00057 41.4 6.3 61 429-489 73-135 (484)
26 smart00102 ADF Actin depolymer 45.6 60 0.0013 31.5 6.6 56 413-468 47-105 (127)
27 KOG3655 Drebrins and related a 41.9 44 0.00096 39.6 5.7 109 7-115 12-134 (484)
28 smart00102 ADF Actin depolymer 37.5 1.4E+02 0.0029 29.1 7.7 76 19-94 16-104 (127)
29 cd00013 ADF Actin depolymerisa 35.7 1.5E+02 0.0032 28.7 7.7 55 414-468 54-111 (132)
30 PF00241 Cofilin_ADF: Cofilin/ 33.6 1.5E+02 0.0032 28.6 7.3 87 19-108 16-115 (127)
31 PLN03216 actin depolymerizing 27.3 4.7E+02 0.01 26.2 9.7 107 1-110 5-131 (141)
32 cd00013 ADF Actin depolymerisa 27.2 2.1E+02 0.0046 27.6 7.2 60 45-107 59-120 (132)
33 PF11330 DUF3132: Protein of u 21.7 72 0.0016 29.3 2.3 36 651-686 88-123 (124)
No 1
>KOG0443 consensus Actin regulatory proteins (gelsolin/villin family) [Cytoskeleton]
Probab=100.00 E-value=1.6e-221 Score=1891.06 Aligned_cols=817 Identities=52% Similarity=0.904 Sum_probs=755.3
Q ss_pred CCCccccCChhhhcCCccccEEEEEEECceeeeCCCCCcCeeeeCcEEEEEEeecCCCCCceEEEEEEecCCCChhhHhh
Q 002004 1 MSTSAKSLDPAFQGAGQRVGTEIWRIENFQPVPLPKSEHGKFYMGDCYIVLQTTPGKGGAYLYDIHFWIGKDTSQDEAGT 80 (983)
Q Consensus 1 ~~~~~~~~d~~f~~~g~~~gl~IWrIe~~~~v~vp~~~~G~Fysgd~YIVL~t~~~~~~~~~~~Ih~W~G~~ss~de~g~ 80 (983)
|+.+|.++|++|+++|+++||+|||||||+++|||++.||+||+|||||||+|+.++++.+.|+||||||+|+|+||+|+
T Consensus 1 ~s~~~~~ld~af~~ag~~pGl~IWRIe~f~lv~VP~s~~G~Fy~GdaYIvL~t~~~k~~~l~~DIHyWLGkd~S~dE~g~ 80 (827)
T KOG0443|consen 1 MSMSMLDLDPAFQGAGQKPGLEIWRIENFELVPVPKSSHGKFYTGDAYIVLKTTLKKNGSLSYDIHYWLGKDSSQDEAGA 80 (827)
T ss_pred CCccccccCHHHHhcccCCceEEEEeccCeeeecchhccCceecCceEEEEehhhccCCccceeEEEEecCccchhhhcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCceEEEeeccCCCHHHHhhcCCcEEEecCcccCCCccccccccccEEEEEecceeEEEEEecCCcC
Q 002004 81 AAIKTVELDAVLGGRAVQHRELQGHESDKFLSYFKPCIIPLEGGVASGFRKTEEEEFETRLYVCKGKRVVRMKQVPFARS 160 (983)
Q Consensus 81 AA~~tveLd~~lgg~~vq~Re~QG~Es~~Fls~Fk~~ii~~~Gg~~sgf~~~e~~~~~~rLy~vkGk~~v~~~eV~~s~s 160 (983)
||++|||||++|||++|||||||||||+.||+|||+||||++||++|||+||+.+.+.+|||||||+|+||++|||++|+
T Consensus 81 aAiktveLD~~Lgg~~vQhREVQg~ES~~FLsYFK~gi~~~~GGv~Sg~khv~~~~~~~rL~~~KGkr~vr~~eV~~~~s 160 (827)
T KOG0443|consen 81 AAIKTVELDDYLGGRAVQHREVQGHESEKFLSYFKPGIIYQEGGVASGFKHVETEEYQVRLFHCKGKRNVRVKEVPFSWS 160 (827)
T ss_pred eeeeeEehhhhhCCCcceeehhcccchHHHHhhccCCceecccccccCcccccccceeeEEEEEccceeEEEEEEEeehh
Confidence 99999999999999999999999999999999999999999999999999999999988999999999999999999999
Q ss_pred CcCCCCceEEeCCCeEEEEcCCCCCHHHHHHHHHHHHHHhhccCCCCccEEEEeCCCCCCCCChhhHHHHhCCCCC-CCC
Q 002004 161 SLNHDDVFILDTKDKIYQFNGANSNIQERAKALEVIQFLKEKYHDGNCNVAIVDDGKLDTESDSGEFWVLFGGFAP-IGK 239 (983)
Q Consensus 161 SLNs~DvFILd~~~~Iy~W~G~~Sn~~ER~kA~~la~~Ik~~~~~G~~~I~~VdeG~~~~~~E~~eFw~~LGg~~~-~~~ 239 (983)
|||++||||||++++||||+|++||++||+||+++|+.|+|.+|.|+|+|.+||+|+++.+++.++||..+||.++ ++.
T Consensus 161 S~N~gDvFILD~g~~i~qw~G~~Ss~~ER~KAl~~~~~IrD~e~~Gr~~V~vvdd~~~~~d~d~~~~~~~~~g~~~~~~~ 240 (827)
T KOG0443|consen 161 SLNHGDVFILDTGSKIYQWNGPNSSIQERAKALEVVQYIRDNERDGRCEVAVVDDGKEAADSDLGEFWGFVLGFAPALPK 240 (827)
T ss_pred hcCCCcEEEEEcCCceEEEcCCcccHHHHHHHHHHHHHhhccCCCCceeEEEecCcccccCchHHHHHHhhcCcCccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999988 666
Q ss_pred CCCCcccccccCCCCeEEEEeC--CceEEEEc--c-ccccccCCCcEEEeeCC-CeEEEEEcCCCCHHHHHHHHHHHHHH
Q 002004 240 KVATEDDVIAETTPPKLYSIED--SQVKIVEG--E-LSKSMLENNKCYLLDRG-SEVFVWVGRVTQVEERKAASQAAEEF 313 (983)
Q Consensus 240 ~~~~~~~~~~~~~~~rLy~v~~--G~l~~~e~--~-l~q~~L~~~~vyILD~g-~eIyVWiGk~as~~eRk~A~~~A~~y 313 (983)
.....++.......++||+|++ |.+.+..+ . |+|+||++++||||||| .+||||+|+.++.+||++||..|++|
T Consensus 241 ~~~~~~~~~~~s~~~kLYkVsd~~g~l~v~~va~~~l~qdlLd~~dCYILD~g~~~IfVW~Gr~as~~ERkaAm~~AeeF 320 (827)
T KOG0443|consen 241 KSPDDDDEQANSAAAKLYKVSDASGGLKVPVVADGPLTKDLLDTEDCYILDCGGGEIFVWKGRQASLDERKAAMSSAEEF 320 (827)
T ss_pred CCcchhhhhhhccccEEEEEeccCCCccccccccchhhHHhhccCCeEEEecCCceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 6555555556678899999993 66665443 2 99999999999999998 99999999999999999999999999
Q ss_pred HHhcCCCCCceEEEecCCCCChhhhhcccCCccCCCCCCCcccchhhHHhhhhccccccccCCCCCCCCCCCCcccCCcc
Q 002004 314 ISSQNRPKSIRITRVIQGYETYAFKSNFDSWPSGSTAPGAEEGRGKVAALLKQQGVGIKGMGKSTPTNEEVPPLLEGGGK 393 (983)
Q Consensus 314 ~~~~~rp~~t~i~~V~eG~Ep~~FK~~F~~W~~~~~~~~~~~~rgkva~~~~~~~~dv~~l~~~~P~~~e~~~~~d~sG~ 393 (983)
|++++||.||+|++|.||+|++.||++|.+|+....+.+.+.+||++|++++++++||..|.+..+++++.+|+|||+|+
T Consensus 321 lk~k~yP~~TqV~rv~EG~Esa~FKq~F~~W~~~~~t~~~~~~rG~va~l~q~~~~Dv~~L~~~~~~aa~~~mvddg~G~ 400 (827)
T KOG0443|consen 321 LKKKKYPPNTQVVRVLEGAESAPFKQLFDSWPDKDQTNGKEEGRGKVAALLQVKGFDVTGLHKSPKMAAQPQMVDDGSGK 400 (827)
T ss_pred HHhccCCCCceEEEecCCCcchhHHHHHhhCccccccccccccccccceeeeecccchhhcccCccccccccceecCCCc
Confidence 99999999999999999999999999999999998887788899999999988899999997776789999999999999
Q ss_pred EEEEEEeCCccccCCCCccceeeeCcEEEEEEeeecCCCCceeEEEEEccCCCChHHHHHHHHHHHHHHHHcCCCCeEEE
Q 002004 394 MEVWRINGSAKTSLPKEDIGKFYSGDCYIVLYTYHSGDRKEDYFLCCWFGKDSIEEDQKMATRLANTMCNSLKGRPVQGR 473 (983)
Q Consensus 394 l~VWRIe~~~~~~v~~~~~G~FysgDcYIVlytY~~~~~k~~~~iy~W~G~~ss~de~~~aa~~a~eL~~~l~g~~vq~R 473 (983)
++||||+|.++++||..++|+||+||||||+|||..++++.+|+||.|+|++|+++|+++|+.+|++|++.++|.|+|+|
T Consensus 401 ~~Vwrv~~~~~~~v~~~~~g~fy~GdcYlvlYtY~~~~~~~~~iiY~W~G~qAs~ee~~~a~~~A~~l~~s~kg~~vq~r 480 (827)
T KOG0443|consen 401 LQVWRVEGDEKQPVDIADYGKFYGGDCYLVLYTYPRGEERTEHIIYVWQGKQASQEERAAAISLAKALVESLKGVPVQVR 480 (827)
T ss_pred EEEEEEcCceeeecChHHhCcccCCCeEEEEEeeccCCcccceEEEEEecccCCHHHHHHHHHHHHHHhhhcCCceeEEE
Confidence 99999999999999999999999999999999995466699999999999999999999999999999999999999999
Q ss_pred eecCCCCHHHHhhcCC-eEEEeCccccCCccccccCCCCCccccCCceeEEEEEecCCCceEEEEeccCcCCCCCCCeEE
Q 002004 474 IFQGREPPQFVALFQP-MVVVKGGLCSGYKKSLADKGLTDETYTADSIALIRISGTSIHNNKTEQVDAVATSLNSSECFL 552 (983)
Q Consensus 474 v~qGkEp~~Fl~iF~~-~iI~~GG~~s~~~~~~~~~~~~~~~y~~~~~~Lf~V~G~~~~~~~aveV~~~assLnS~d~FI 552 (983)
|+|||||||||+||++ |||++||++. .+++|+..+++||||+|++++|++|+||++.++||||+||||
T Consensus 481 v~~GkEP~hF~~iFqgkliifkgg~s~-----------~g~~~~~~~t~LFqV~Gt~~~n~kAveV~~~A~SLNSsd~fv 549 (827)
T KOG0443|consen 481 IYEGKEPPHFLAIFQGKLIIFKGGTSE-----------EGNTYPAPSTRLFQVQGTGPSNTKAVEVPAVASSLNSSDCFV 549 (827)
T ss_pred eecCCCChHHHHhhCCceEEEecCcCC-----------CCCccCCCceEEEEEeccCcccceeEeeccccccccccceEE
Confidence 9999999999999998 9999999873 345677888999999999999999999999999999999999
Q ss_pred eeeCCeEEEEECCCCCHHHHHHHHHHHHHhCCCceEEecccCCCccccccccCCCcCCCCCCC-CCCCCCCCcEEEEEec
Q 002004 553 LQSGSTMFTWHGNQSTFEQQQLAAKVAEFLKPGVAIKHAKEGTESSAFWFPLGGKQSYTSKKV-SPEIVRDPHLFTFSFN 631 (983)
Q Consensus 553 L~~~~~iyvW~G~~ss~~er~~A~~va~~l~~~~~~~~v~EG~E~~~FW~~LGgk~~y~~~~~-~~~~~~~prLF~~s~~ 631 (983)
|++++++|+|||++||++||+||+.++..|+ ..+...+.||+||++||++|||+.+|+++++ .....++||||.|++.
T Consensus 550 L~t~s~~ylW~G~gss~~e~e~A~~v~~~l~-~~~~~~v~EG~Ep~~FWe~LGGk~~Y~~sk~~~~~~~~~PrLF~Cs~~ 628 (827)
T KOG0443|consen 550 LKTGSSVYLWCGKGSSGDEREMAKRVLDLLK-RCQSTAVKEGSEPDEFWELLGGKAEYPSSKRLEEKPERDPRLFSCSNK 628 (827)
T ss_pred EecCCeEEEEeCCCCCHHHHHHHHHHHHHHh-cCChhhhhcCCCchhhHHHcCCCCCCCcCccccccCCCCCcEEEEEec
Confidence 9999999999999999999999999999997 3577889999999999999999999999984 4456799999999999
Q ss_pred CCceeEeeecccCccCCCCCCEEEEeCCCEEEEEEcCCCCHHHHHHHHHHHHHHHhhhcccCCCCCCCcEEEecCCCCCc
Q 002004 632 KGAFQVEEVYNFSQDDLLTEDILILDTHAEVFVWVGQSVDSKEKQSAFEFGQNYIDMATSLEGLSPKVPLYKVTEGNEPC 711 (983)
Q Consensus 632 ~G~~~v~EI~~F~QdDL~~~dv~ILD~~~eIfVWiG~~a~~~ek~~Al~~A~~Yl~~~~~~~~r~~~~pI~~V~qG~EP~ 711 (983)
+|+|.++||++|+||||++|||||||||++||||||++++++||..|+.+|++||+++ ..+||++.|||++|+||+||+
T Consensus 629 ~g~f~~~EI~~F~QdDL~tdDi~lLDt~~evfvWvG~~a~~~eK~~Al~~~~~yl~~~-~p~gr~~~TPI~vV~qG~EPp 707 (827)
T KOG0443|consen 629 TGSFVVEEIYNFTQDDLMTDDIMLLDTWSEVFVWVGQEANEKEKEEALTIGQKYLETD-LPEGRDPRTPIYVVKQGHEPP 707 (827)
T ss_pred CCcEEEEEecCcchhhccccceEEEecCceEEEEecCCCChhHHHHHHHHHHHHHhcc-CcccCCCCCceEEecCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999 445999999999999999999
Q ss_pred cccccee-cCCCcccccCchHHHHHHHHhcCCCccccccccCCCCCccchhhhhhhccCCCCCCCCCCCCCCCCCCCCCC
Q 002004 712 FCTTFFS-WDPTKATVQGNSFQKKVALLFGASHAAEDKSHANQGGPTQRASALAALSSAFNPSSERSTSPSHDRSNGSNQ 790 (983)
Q Consensus 712 ~Ft~~F~-Wd~~k~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 790 (983)
+||+||. ||+.| +||++++++|++..
T Consensus 708 ~Ftg~F~~WD~~k-----wS~~~~~~~l~~~~------------------------------------------------ 734 (827)
T KOG0443|consen 708 FFTGFFLSWDPSK-----WSFQKKLKDLKNKV------------------------------------------------ 734 (827)
T ss_pred hhhccccccCCcc-----cccchHHHHHhccc------------------------------------------------
Confidence 9999999 99998 56899999998661
Q ss_pred CCCCCcchhHHHhhhcccCCCCCCCCCCCCCCCCCCchHHHHHHHHhhhhhccccCCCCCCCCCCCCCCCccccCCCCcc
Q 002004 791 GGPTQRASALAALSSAFKSSPGTKASAPKTSGSGQGSQRAAAVAALSQVLSAEKKRSPDTSPTRTSGSPTAETSLSSEPK 870 (983)
Q Consensus 791 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 870 (983)
.+++.+++++++.++|.-.+ - +. +
T Consensus 735 ---~~~~~~~~~~~a~~~sk~~~----~---~~---------------------------~------------------- 758 (827)
T KOG0443|consen 735 ---TYNARAISEISADVRSKLYP----D---SL---------------------------N------------------- 758 (827)
T ss_pred ---ccchhhccchhhhhhccccc----c---cC---------------------------C-------------------
Confidence 23444555566666552111 0 00 0
Q ss_pred ccccccccccccccCCcccccccccccCCCCCCCccccccccccCCCCCCCcccChHHHhhccCCCCCCCCccccccCCC
Q 002004 871 AEYAHSESEASEQVGDVKETEEVVPVSESNGDDSETKQVTEQDENGSETSRSTFSYDQLKARSDNPVTGIDFKRREAYLS 950 (983)
Q Consensus 871 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~vd~~~~E~yLs 950 (983)
+.. +....+|||++|+.++.++.++|||+|||.|||
T Consensus 759 ----------------------------------------~~~----~~p~~~~~~e~l~~~~~~~~~~id~~rrE~yLs 794 (827)
T KOG0443|consen 759 ----------------------------------------PDS----EAPRPAFPYEQLLTQSEDPVPDIDPTRREAYLS 794 (827)
T ss_pred ----------------------------------------CCc----cCcccCCCHHHHhccccCcCCCCChhHhhhhcc
Confidence 000 011258999999966666655599999999999
Q ss_pred HHHHHHHhCCCHHHHhcCchhhHhhhhhhcCCC
Q 002004 951 DEEFQTVFGMMKEAFYKLPKWKQDMQKKKFDLF 983 (983)
Q Consensus 951 ~~~F~~~f~m~~~~f~~lp~Wkq~~~Kk~~~Lf 983 (983)
++||+.+|||+++|||+||+|||++|||+++||
T Consensus 795 ~~dF~~~Fgmtk~eF~~LPkWKq~~lKk~~~LF 827 (827)
T KOG0443|consen 795 EEEFVSVFGMTKEEFYALPKWKQNKLKKQFGLF 827 (827)
T ss_pred HHHHHHHhCcCHHHHhhcchhHHHHHhhhhccC
Confidence 999999999999999999999999999999999
No 2
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=100.00 E-value=3.5e-101 Score=863.26 Aligned_cols=688 Identities=28% Similarity=0.493 Sum_probs=571.2
Q ss_pred cCCccccEEEEEEECceeeeCCCCCcCeeeeCcEEEEEEeecCCCCCceEEEEEEecCCCChhhHhhHHHHHHHHHHHhC
Q 002004 14 GAGQRVGTEIWRIENFQPVPLPKSEHGKFYMGDCYIVLQTTPGKGGAYLYDIHFWIGKDTSQDEAGTAAIKTVELDAVLG 93 (983)
Q Consensus 14 ~~g~~~gl~IWrIe~~~~v~vp~~~~G~Fysgd~YIVL~t~~~~~~~~~~~Ih~W~G~~ss~de~g~AA~~tveLd~~lg 93 (983)
.+|+.+|+.||.||||-+..+++..||+||++||||||.|+....|.++|.||||||.+++-|...++|+++|.|..+||
T Consensus 496 DvGqlpGltiWeIENF~P~~~eEafHGkFYeaDcYiVLKT~~ddsG~L~weIfyWiG~eAtLDK~aCsAiHAVnLRN~Lg 575 (1255)
T KOG0444|consen 496 DVGQLPGLTIWEIENFYPSIMEEAFHGKFYEADCYIVLKTTRDDSGQLRWEIFYWIGEEATLDKGACSAIHAVNLRNHLG 575 (1255)
T ss_pred ccCCCCCceEEeehhhhhHHHHHHhccceecccEEEEEEeecccccccceeEEEEecccccccchhhhHHHhhhhhhhhC
Confidence 69999999999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred CCceEEEeeccCCCHHHHhhcCCcEEEecCc-ccCCCccccccccccEEEEEecc-eeEEEEEecCCcCCcCCCCceEEe
Q 002004 94 GRAVQHRELQGHESDKFLSYFKPCIIPLEGG-VASGFRKTEEEEFETRLYVCKGK-RVVRMKQVPFARSSLNHDDVFILD 171 (983)
Q Consensus 94 g~~vq~Re~QG~Es~~Fls~Fk~~ii~~~Gg-~~sgf~~~e~~~~~~rLy~vkGk-~~v~~~eV~~s~sSLNs~DvFILd 171 (983)
..|..+||.||.||+.||++|..-|+|.+|| .+|||..+|...+.+|||+|-++ ..|.+.-||++-.||....||+||
T Consensus 576 A~CRTvREEmgDEsEeFL~lF~~ei~YIEGGrTasGFYT~E~~~h~TRlYrv~~~g~~i~lEPVpl~~tSLDPRf~FlLD 655 (1255)
T KOG0444|consen 576 ATCRTVREEMGDESEEFLTLFGEEIVYIEGGRTASGFYTTEKPAHLTRLYRVGVNGTAIELEPVPLSVTSLDPRFCFLLD 655 (1255)
T ss_pred chhhhhHHhhCccHHHHHHHhcceeEEEecCceecceeeecchHHhhhhheeccccceeEeeccCccccccCcceEEEEe
Confidence 9999999999999999999999999999999 89999999988899999999877 689999999999999999999999
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHHHHhhccCCCCccEEEEeCCCCCCCCChhhHHHHhCCCCCCCCCCCCccc-cccc
Q 002004 172 TKDKIYQFNGANSNIQERAKALEVIQFLKEKYHDGNCNVAIVDDGKLDTESDSGEFWVLFGGFAPIGKKVATEDD-VIAE 250 (983)
Q Consensus 172 ~~~~Iy~W~G~~Sn~~ER~kA~~la~~Ik~~~~~G~~~I~~VdeG~~~~~~E~~eFw~~LGg~~~~~~~~~~~~~-~~~~ 250 (983)
.+.+||+|.|-.|.+.--.||+.+|.+|..++|.|+|+|...-+|. |+.|||.+|||...-+.....+.- +.+.
T Consensus 656 ~G~~IyiW~G~~s~~t~~~KARLfAEkinK~eRKgK~EI~l~rQg~-----e~pEFWqaLgg~p~e~~~~ikeHVPEdf~ 730 (1255)
T KOG0444|consen 656 AGETIYIWSGYKSRITVSNKARLFAEKINKRERKGKSEIELCRQGR-----EPPEFWQALGGNPDEPQGAIKEHVPEDFV 730 (1255)
T ss_pred CCceEEEEeccchhcccchHHHHHHHHhhhhhccCceeeehhhhcC-----CCHHHHHHhCCCCcccccchhhcCCcccC
Confidence 9999999999999999999999999999999999999999998885 889999999997654332221110 1123
Q ss_pred CCCCeEEEEe--CCceEEEEc---c---ccccccCCCcEEEeeCCCeEEEEEcCCCCHHHHHHHHHHHHHHHHhcCCCCC
Q 002004 251 TTPPKLYSIE--DSQVKIVEG---E---LSKSMLENNKCYLLDRGSEVFVWVGRVTQVEERKAASQAAEEFISSQNRPKS 322 (983)
Q Consensus 251 ~~~~rLy~v~--~G~l~~~e~---~---l~q~~L~~~~vyILD~g~eIyVWiGk~as~~eRk~A~~~A~~y~~~~~rp~~ 322 (983)
...+|||+|. .|.+++-.+ + +.|++|++..||||||.+.||||+|++++.-.|.+|.++..++.....||..
T Consensus 731 p~qpkLYkV~lGmGyLELPQvel~P~~~l~q~lL~sk~VyiLDc~sDiF~W~GkKs~RLvraAa~KL~~EL~~M~dRPdy 810 (1255)
T KOG0444|consen 731 PEQPKLYKVNLGMGYLELPQVELLPKGILKQDLLGSKGVYILDCNSDIFLWIGKKSNRLVRAAAQKLVVELHQMIDRPDY 810 (1255)
T ss_pred CCCcceEEEccccceeecchhhhchhhHHHHHhhcCCeEEEEecCCceEEEecccchHHHHHHHHHHHHHHHhhhcCcch
Confidence 5678999998 677764333 2 7899999999999999999999999999999999999999999999999999
Q ss_pred ceEEEecCCCCChhhhhcccCCccCCCC---CCC-----cccchhh-HHhhhhccccccccCCC-C---CCCCCCCCccc
Q 002004 323 IRITRVIQGYETYAFKSNFDSWPSGSTA---PGA-----EEGRGKV-AALLKQQGVGIKGMGKS-T---PTNEEVPPLLE 389 (983)
Q Consensus 323 t~i~~V~eG~Ep~~FK~~F~~W~~~~~~---~~~-----~~~rgkv-a~~~~~~~~dv~~l~~~-~---P~~~e~~~~~d 389 (983)
+.|.++.+|.|.-+|+.+|.+|++.... ... ..|.-|+ ++.-.+-..|+..|+-. + |.++..+++.+
T Consensus 811 A~V~R~~EG~E~q~FrsKFagWDev~~VDyTRta~sV~~~pg~~k~~~~k~~~mraDLaALFlpRQp~MslaEaEqLmEe 890 (1255)
T KOG0444|consen 811 AQVYRETEGEESQMFRSKFAGWDEVVPVDYTRTADSVQRVPGDLKVIVKKDNMMRADLAALFLPRQPSMSLAEAEQLMEE 890 (1255)
T ss_pred hheeeccCccHHHHHHHhhCCcceeeeeecccchHHHhhCcchhhHHHhhhhhhHHHHHHHhcCCCCCCChHHHHHHHHH
Confidence 9999999999999999999999987531 110 0111111 11111113344443322 2 23444455566
Q ss_pred CCcc---EEEEEEeCCccccCCCCccceeeeCcEEEEEEeee-----cCCCC----------------------ceeEEE
Q 002004 390 GGGK---MEVWRINGSAKTSLPKEDIGKFYSGDCYIVLYTYH-----SGDRK----------------------EDYFLC 439 (983)
Q Consensus 390 ~sG~---l~VWRIe~~~~~~v~~~~~G~FysgDcYIVlytY~-----~~~~k----------------------~~~~iy 439 (983)
++-+ ++-|.++|...+.+|+++.|+||++||||+|+.|. +++|+ .+|++|
T Consensus 891 wNyDLe~ME~FVLEgKKFvrLPeeEfG~FYT~dCYVFLCRY~vp~EE~Eeg~ed~~n~~advsks~e~~qPE~dfqCvVY 970 (1255)
T KOG0444|consen 891 WNYDLELMESFVLEGKKFVRLPEEEFGIFYTMDCYVFLCRYAVPPEEDEEGEEDHANPAADVSKSDEDDQPEMDFQCVVY 970 (1255)
T ss_pred hcccHHHHHHHhhcCchhccCCHHHhCeeeccceEEEEEeeecCCCCccccccccCCccccccccccccCCccceeEEEE
Confidence 6544 56788999999999999999999999999999996 11111 279999
Q ss_pred EEccCCCChHHH-HHHHHHHHHHHHHcCCCCeEEEeecCCCCHHHHhhcCC-eEEEeCccccCCccccccCCCCCccccC
Q 002004 440 CWFGKDSIEEDQ-KMATRLANTMCNSLKGRPVQGRIFQGREPPQFVALFQP-MVVVKGGLCSGYKKSLADKGLTDETYTA 517 (983)
Q Consensus 440 ~W~G~~ss~de~-~~aa~~a~eL~~~l~g~~vq~Rv~qGkEp~~Fl~iF~~-~iI~~GG~~s~~~~~~~~~~~~~~~y~~ 517 (983)
|||||+|+.... .....+.......++++.-.||++|..|-+.||+.|+. +||++|.... -+ .. -.
T Consensus 971 FWQGR~AsNMGWLtFTF~LQkkFe~~F~~kLEVVRm~QQQEN~KFlSHFKRKFiIhrGkRk~-~~----~~-------G~ 1038 (1255)
T KOG0444|consen 971 FWQGRDASNMGWLTFTFQLQKKFEEIFKDKLEVVRMYQQQENHKFLSHFKRKFIIHRGKRKL-TK----NL-------GG 1038 (1255)
T ss_pred EecCCccCccceEEEEEEehhhHHHhcccceeeeeHhhhhhhhHHHHHhhhhheeeccccch-hh----hh-------cC
Confidence 999999987544 22334556666778999999999999999999999995 6666665421 01 01 12
Q ss_pred CceeEEEEEecCCC-ceEEEEeccCcCCCCCCCeEEeee-------CCeEEEEECCCCCHHHHHHHHHHHHHhCC-CceE
Q 002004 518 DSIALIRISGTSIH-NNKTEQVDAVATSLNSSECFLLQS-------GSTMFTWHGNQSTFEQQQLAAKVAEFLKP-GVAI 588 (983)
Q Consensus 518 ~~~~Lf~V~G~~~~-~~~aveV~~~assLnS~d~FIL~~-------~~~iyvW~G~~ss~~er~~A~~va~~l~~-~~~~ 588 (983)
..+.|||+|.++.. ++|+|||.+.++.|||..||||+. ++.+|+|-|+.|+++|++.|..+...... ..-+
T Consensus 1039 ~~pelfq~R~NGsalctR~IQin~da~~LnS~FC~iL~vPFe~~~~~gvvy~w~gk~sdp~e~~~a~d~~~~~~d~~~~~ 1118 (1255)
T KOG0444|consen 1039 KWPELFQMRANGSALCTRTIQINCDANQLNSAFCHMLRIPFEEDGHRGVVYVWMGKDSDPREHEFASDLVVRDDDNDFRI 1118 (1255)
T ss_pred CCchheeeecCCccceeeeEEecCcHHHHhhhhHheEecccccCCCceEEEEEeccCCChHHHHHHHHhcCccccchhhh
Confidence 34689999988664 899999999999999999999975 36789999999999999998655443322 2346
Q ss_pred EecccCCCccccccccCCCcCCCCCCCCCCCCCCCcEEEEEecCCceeEeee-cccCccCCCCCCEEEEeCCCEEEEEEc
Q 002004 589 KHAKEGTESSAFWFPLGGKQSYTSKKVSPEIVRDPHLFTFSFNKGAFQVEEV-YNFSQDDLLTEDILILDTHAEVFVWVG 667 (983)
Q Consensus 589 ~~v~EG~E~~~FW~~LGgk~~y~~~~~~~~~~~~prLF~~s~~~G~~~v~EI-~~F~QdDL~~~dv~ILD~~~eIfVWiG 667 (983)
..+.||.|+.+||..+||+++|.... ....-.|||+|++.+|+|.++|- .+|+||||..+|+||||.+..+|+|||
T Consensus 1119 ~~~~egee~e~fw~~~g~~k~ye~d~---~~~khtrlfrc~nekgyfa~sek~~DfcqDDl~dddim~ldng~~v~~w~g 1195 (1255)
T KOG0444|consen 1119 VEVQEGEENEEFWKVLGGKKKYETDS---SFVKHTRLFRCTNEKGYFAISEKTVDFCQDDLDDDDIMILDNGDAVFLWIG 1195 (1255)
T ss_pred hccCCccchHHHhcccCCCCccchhH---HHHHHHHHHhccchhhhhhHhHhhhhhhhccchhhhhhhhcccceeeeeec
Confidence 77899999999999999999886542 12234689999999999999887 499999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhhhcccCCCCCCCcE--EEecCCCCCccccccee-cCCCcc
Q 002004 668 QSVDSKEKQSAFEFGQNYIDMATSLEGLSPKVPL--YKVTEGNEPCFCTTFFS-WDPTKA 724 (983)
Q Consensus 668 ~~a~~~ek~~Al~~A~~Yl~~~~~~~~r~~~~pI--~~V~qG~EP~~Ft~~F~-Wd~~k~ 724 (983)
...+..|-+.+...+|-|..+.+. +....|. ..+..|.|.+.|+++|+ |...+.
T Consensus 1196 ~~~s~ie~Kls~~a~Qvy~~~mr~---k~~e~pr~~~l~~~gre~~~F~~cfhaws~~~~ 1252 (1255)
T KOG0444|consen 1196 ARSSDIEAKLSYQAAQVYHASMRM---KANEKPRKFMLAVRGRESCRFRKCFHAWSKMKE 1252 (1255)
T ss_pred ceehhHHHHHHHHHHHHHHHhccc---ccccchHHHHHHHhcchhhhhHHHHHHHHHhhc
Confidence 999999999999999999987653 3334443 56889999999999999 976543
No 3
>KOG0445 consensus Actin regulatory protein supervillin (gelsolin/villin family) [Cytoskeleton]
Probab=100.00 E-value=7.6e-96 Score=822.66 Aligned_cols=533 Identities=27% Similarity=0.472 Sum_probs=433.0
Q ss_pred ccEEEEEecceeEEEEEecCCcCCcCCCCceEEeCCCeEEEEcCCCCCHHHHHHHHHHHHHHhhccCCCCc---cEEEEe
Q 002004 138 ETRLYVCKGKRVVRMKQVPFARSSLNHDDVFILDTKDKIYQFNGANSNIQERAKALEVIQFLKEKYHDGNC---NVAIVD 214 (983)
Q Consensus 138 ~~rLy~vkGk~~v~~~eV~~s~sSLNs~DvFILd~~~~Iy~W~G~~Sn~~ER~kA~~la~~Ik~~~~~G~~---~I~~Vd 214 (983)
..+|+||||+++|+++.|++..+|||++|||||..++.+|.|.|..+|++||+||.+++..|..+.. -.| .|++|.
T Consensus 223 ~vMLlqVkGr~hVqtRLVeP~~ssln~gdCF~lv~~~~lf~yvG~faNviEk~kas~lc~~I~~k~d-LgCtAt~ivtit 301 (919)
T KOG0445|consen 223 RVMLLQVKGRRHVQTRLVEPRASSLNSGDCFLLVSPHCLFLYVGEFANVIEKAKASELCTLIQTKRD-LGCTATYIVTIT 301 (919)
T ss_pred ceEEEEEcccccceeEEechhhcccccCceEEEechhHHhhhhhHHHHHHHHhHHHHHHHHHhhccc-CCceeEEEEEEe
Confidence 6899999999999999999999999999999999999999999999999999999999999987643 335 467777
Q ss_pred CCCCCCCCChhhHHHHhCCCCCCCCCCCCcccccccCC---CCeEEEEeCCceEEEEcc---ccccccCCCcEEEeeCCC
Q 002004 215 DGKLDTESDSGEFWVLFGGFAPIGKKVATEDDVIAETT---PPKLYSIEDSQVKIVEGE---LSKSMLENNKCYLLDRGS 288 (983)
Q Consensus 215 eG~~~~~~E~~eFw~~LGg~~~~~~~~~~~~~~~~~~~---~~rLy~v~~G~l~~~e~~---l~q~~L~~~~vyILD~g~ 288 (983)
+ ..........||++||+...+....-..+++.++.. ...+|++.+.++.+.+-. ++.++|++..|.|+|+|+
T Consensus 302 ~-~~~~t~~~~~Fw~llg~qs~~~~~g~a~ede~fE~~iietN~iyr~~dd~l~p~~~~w~ipk~~~l~p~eVLvFDFGS 380 (919)
T KOG0445|consen 302 E-INTHTHAAKDFWKLLGGQSSYQSAGDAKEDELFEAAIIETNCIYRLMDDKLVPDDDYWKIPKCSLLQPKEVLVFDFGS 380 (919)
T ss_pred c-cchhHHHHHHHHHHhCCccchhhcCCccccchHHHHHHHhhhHHhhcccccCccccccccccccccCcceEEEEecCc
Confidence 6 322333467899999987766544333334444433 245677777777765532 888999999999999999
Q ss_pred eEEEEEcCCCCHHHHHHHHHHHHHHHH-----------------hcCCCCCceEEEecCCCCChhhhhcccCCccCCCCC
Q 002004 289 EVFVWVGRVTQVEERKAASQAAEEFIS-----------------SQNRPKSIRITRVIQGYETYAFKSNFDSWPSGSTAP 351 (983)
Q Consensus 289 eIyVWiGk~as~~eRk~A~~~A~~y~~-----------------~~~rp~~t~i~~V~eG~Ep~~FK~~F~~W~~~~~~~ 351 (983)
|||||.||.++...|+.|+++|++++. ..+||.|+..-+|+||.|+.+||++|.+|++.....
T Consensus 381 EvYVW~Gk~~~~~~~~~A~~lAk~l~~~dy~nc~~npld~~~~~~~gRPeW~i~gkitq~~et~LFKeKFsDWpE~~r~~ 460 (919)
T KOG0445|consen 381 EVYVWHGKEVTLAQRKIAFQLAKHLWNFDYENCDINPLDLIPRKGQGRPEWAIFGKITQHNETILFKEKFSDWPELKRSN 460 (919)
T ss_pred eEEEEcCccCchHHHHHHHHHHHHHhCCCcccCccccccccccccCCCcceeeechhhcchhhhhHHHhhccchHhhhhh
Confidence 999999999999999999999999875 358999999999999999999999999999876422
Q ss_pred CCcccchhhHHhhhhc-----cccccccCCCCCC--------------------CCCCCCcccCCccEEEEEEeCCcccc
Q 002004 352 GAEEGRGKVAALLKQQ-----GVGIKGMGKSTPT--------------------NEEVPPLLEGGGKMEVWRINGSAKTS 406 (983)
Q Consensus 352 ~~~~~rgkva~~~~~~-----~~dv~~l~~~~P~--------------------~~e~~~~~d~sG~l~VWRIe~~~~~~ 406 (983)
..+.|+ .|...+.. .+|+..|.+ .|. ....+.+|..+.++.+|.|-++....
T Consensus 461 ~~~k~~--~~~~k~np~~~v~a~~~t~~~~-ep~~~~~~iL~~~nlgrg~~l~d~~drr~fdVis~s~d~W~i~ef~~~~ 537 (919)
T KOG0445|consen 461 EKNKGE--LAQHKENPRTDVKAYDVTRMVS-EPQTTAGTILDGVNLGRGYGLVDGHDRRQFDVISVSVDVWHILEFDYSR 537 (919)
T ss_pred ccCchh--hhhhhcCCceeeeehhheeccc-chhhhHHHHhhhhccCCceeeeecccceeeeeeeecccceeeehhhhhh
Confidence 122211 11111111 122222221 221 01122344567789999999999999
Q ss_pred CCCCccceeeeCcEEEEEEeee---------------cCCCCceeEEEEEccCCCChHHHHHHHHHHHHHHHHcCCCCeE
Q 002004 407 LPKEDIGKFYSGDCYIVLYTYH---------------SGDRKEDYFLCCWFGKDSIEEDQKMATRLANTMCNSLKGRPVQ 471 (983)
Q Consensus 407 v~~~~~G~FysgDcYIVlytY~---------------~~~~k~~~~iy~W~G~~ss~de~~~aa~~a~eL~~~l~g~~vq 471 (983)
+| +++||||++|||||.|.|. ...||++|++|||||+|++..|+|+||+++++||+ .+..|
T Consensus 538 ~~-~~~ghF~s~~~YvvrWky~Is~~Vr~~~~g~~~~r~~Gr~rcvyf~WqG~hst~~ekG~~AL~tvElD~---e~gaq 613 (919)
T KOG0445|consen 538 LP-QSIGHFHSGDAYVVRWKYMISTAVRSRQKGEHSVRAAGRERCVYFFWQGRHSTVSEKGTSALMTVELDE---ERGAQ 613 (919)
T ss_pred hh-hhhhccccCceEEEEEEEEeehhhhhhhcCccchhhcccceEEEEEEccccCCcccccceeeeeeeecc---ccCce
Confidence 98 8999999999999999996 13578899999999999999999999999999987 46689
Q ss_pred EEeecCCCCHHHHhhcCC-eEEEeCccccCCccccccCCCCCccccCCceeEEEEEecCCCceEEEEeccCcCCCCCCCe
Q 002004 472 GRIFQGREPPQFVALFQP-MVVVKGGLCSGYKKSLADKGLTDETYTADSIALIRISGTSIHNNKTEQVDAVATSLNSSEC 550 (983)
Q Consensus 472 ~Rv~qGkEp~~Fl~iF~~-~iI~~GG~~s~~~~~~~~~~~~~~~y~~~~~~Lf~V~G~~~~~~~aveV~~~assLnS~d~ 550 (983)
+||.||+||+.||++|+| |+++.|-.. ...-|||+|+|..+.++-..||.+..|+|.|+-.
T Consensus 614 vrv~qG~Ep~~Fl~lF~g~m~vhsgr~E------------------~~~erlY~v~G~vs~Et~l~Ev~c~~S~LRSr~s 675 (919)
T KOG0445|consen 614 VRVLQGKEPPCFLQLFQGGMVVHSGRRE------------------EEEERLYCVRGEVSVETNLLEVACHCSSLRSRTS 675 (919)
T ss_pred eEeecCCCccHHHHHhcCCeeEEcCchh------------------hchhheeeEecccccchhhhHhhhccccccccce
Confidence 999999999999999995 666655321 1123799999999999999999999999999999
Q ss_pred EEeeeC--CeEEEEECCCCCHHHHHHHHHHHHHhC---C----CceEEecccCCCccccccccCCCcCCCCCCCCCCCCC
Q 002004 551 FLLQSG--STMFTWHGNQSTFEQQQLAAKVAEFLK---P----GVAIKHAKEGTESSAFWFPLGGKQSYTSKKVSPEIVR 621 (983)
Q Consensus 551 FIL~~~--~~iyvW~G~~ss~~er~~A~~va~~l~---~----~~~~~~v~EG~E~~~FW~~LGgk~~y~~~~~~~~~~~ 621 (983)
||+..+ ..+|+|||..+-.+.|+.+..+|+.|. + +..+..|+||++|..||++||-|. ..+
T Consensus 676 mv~~~~~~~~~~~whg~k~~~ht~~v~v~aa~~~~~q~pgs~~~~~~~Eveegs~~~~~~~alGrkd----------f~~ 745 (919)
T KOG0445|consen 676 MVVLNVNKALIYLWHGCKAQAHTKEVGVTAANKIKEQCPGSSSKVTIHEVEEGSEPLGFWDALGRKD----------FNF 745 (919)
T ss_pred EEEEeccccceEEEecccCCcchhhHhHHHHHHHHHhCCCccccceeEeecCCCCchhhhhhccccc----------ccc
Confidence 999775 479999999999999999998888764 2 357889999999999999999874 467
Q ss_pred CCcEEEEEecCCceeEeee-------cccCccCCCCCCEEEEeCCCEEEEEEcCCCCHHHHHHHHHHHHHHHhhhcccCC
Q 002004 622 DPHLFTFSFNKGAFQVEEV-------YNFSQDDLLTEDILILDTHAEVFVWVGQSVDSKEKQSAFEFGQNYIDMATSLEG 694 (983)
Q Consensus 622 ~prLF~~s~~~G~~~v~EI-------~~F~QdDL~~~dv~ILD~~~eIfVWiG~~a~~~ek~~Al~~A~~Yl~~~~~~~~ 694 (983)
.||||-++..+ ++|+ ++|+|+||.+. ||||.|+++|+|. -..+|+.||++|.+|++.
T Consensus 746 ~~RlF~~sS~q----a~els~p~rc~~pFsQ~~Ly~a--fLvD~gdelwLW~----w~s~r~~Aleta~~Ywk~------ 809 (919)
T KOG0445|consen 746 APRLFILSSSQ----ATELSYPARCPMPFSQEDLYSA--FLVDNGDELWLWQ----WASDRKSALETALQYWKN------ 809 (919)
T ss_pred cceeeeccchh----hhhccCcccCCCcccHHHHhhh--eeeccCCeeEeeh----hhhHHHHHHHHHHHHHhc------
Confidence 89999988665 4454 68999999994 9999999999998 466899999999999984
Q ss_pred CCCCCcEEEecCCCCCccccccee-cCCCccc
Q 002004 695 LSPKVPLYKVTEGNEPCFCTTFFS-WDPTKAT 725 (983)
Q Consensus 695 r~~~~pI~~V~qG~EP~~Ft~~F~-Wd~~k~~ 725 (983)
+ ..|-++|..|.||..||++|. |......
T Consensus 810 ~--~~p~~vV~aGlEPl~Fk~lFp~We~red~ 839 (919)
T KOG0445|consen 810 L--KAPSYVVHAGLEPLTFKNLFPSWEHREDI 839 (919)
T ss_pred c--CCCceEEEcCcChhhhhhhCCCceecccc
Confidence 2 267899999999999999999 9987544
No 4
>KOG0443 consensus Actin regulatory proteins (gelsolin/villin family) [Cytoskeleton]
Probab=100.00 E-value=2.3e-62 Score=567.98 Aligned_cols=317 Identities=32% Similarity=0.508 Sum_probs=286.1
Q ss_pred hcCCccccEEEEEEECceeeeCCCCCcCeeeeCcEEEEEEeecCCCCCceEEEEEEecCCCChhhHhhHHHHHHHHHHHh
Q 002004 13 QGAGQRVGTEIWRIENFQPVPLPKSEHGKFYMGDCYIVLQTTPGKGGAYLYDIHFWIGKDTSQDEAGTAAIKTVELDAVL 92 (983)
Q Consensus 13 ~~~g~~~gl~IWrIe~~~~v~vp~~~~G~Fysgd~YIVL~t~~~~~~~~~~~Ih~W~G~~ss~de~g~AA~~tveLd~~l 92 (983)
.+.|+ ++||||++...++||...||+||+||||||||+|.....+..|.||.|+|++++++|+.+|+.+|++|++.+
T Consensus 396 dg~G~---~~Vwrv~~~~~~~v~~~~~g~fy~GdcYlvlYtY~~~~~~~~~iiY~W~G~qAs~ee~~~a~~~A~~l~~s~ 472 (827)
T KOG0443|consen 396 DGSGK---LQVWRVEGDEKQPVDIADYGKFYGGDCYLVLYTYPRGEERTEHIIYVWQGKQASQEERAAAISLAKALVESL 472 (827)
T ss_pred cCCCc---EEEEEEcCceeeecChHHhCcccCCCeEEEEEeeccCCcccceEEEEEecccCCHHHHHHHHHHHHHHhhhc
Confidence 46777 999999999999999999999999999999999987666889999999999999999999999999999999
Q ss_pred CCCceEEEeeccCCCHHHHhhcCCcEEEecCcccCCCccccccccccEEEEEecc--eeEEEEEecCCcCCcCCCCceEE
Q 002004 93 GGRAVQHRELQGHESDKFLSYFKPCIIPLEGGVASGFRKTEEEEFETRLYVCKGK--RVVRMKQVPFARSSLNHDDVFIL 170 (983)
Q Consensus 93 gg~~vq~Re~QG~Es~~Fls~Fk~~ii~~~Gg~~sgf~~~e~~~~~~rLy~vkGk--~~v~~~eV~~s~sSLNs~DvFIL 170 (983)
+|.+||.|+.||+||+||+++|++.+|+++||.+.-.+ ..+...++||||+|. .+.++.||+..++||||+|||||
T Consensus 473 kg~~vq~rv~~GkEP~hF~~iFqgkliifkgg~s~~g~--~~~~~~t~LFqV~Gt~~~n~kAveV~~~A~SLNSsd~fvL 550 (827)
T KOG0443|consen 473 KGVPVQVRIYEGKEPPHFLAIFQGKLIIFKGGTSEEGN--TYPAPSTRLFQVQGTGPSNTKAVEVPAVASSLNSSDCFVL 550 (827)
T ss_pred CCceeEEEeecCCCChHHHHhhCCceEEEecCcCCCCC--ccCCCceEEEEEeccCcccceeEeeccccccccccceEEE
Confidence 99999999999999999999999999999999864111 123346899999987 57899999999999999999999
Q ss_pred eCCCeEEEEcCCCCCHHHHHHHHHHHHHHhhccCCCCccEEEEeCCCCCCCCChhhHHHHhCCCCCCCCCCCCccccccc
Q 002004 171 DTKDKIYQFNGANSNIQERAKALEVIQFLKEKYHDGNCNVAIVDDGKLDTESDSGEFWVLFGGFAPIGKKVATEDDVIAE 250 (983)
Q Consensus 171 d~~~~Iy~W~G~~Sn~~ER~kA~~la~~Ik~~~~~G~~~I~~VdeG~~~~~~E~~eFw~~LGg~~~~~~~~~~~~~~~~~ 250 (983)
.++..+|+|+|+.|+..||.+|..++..|+ +|+-..|.|| +|+++||++|||+.+|+..... ....
T Consensus 551 ~t~s~~ylW~G~gss~~e~e~A~~v~~~l~------~~~~~~v~EG-----~Ep~~FWe~LGGk~~Y~~sk~~---~~~~ 616 (827)
T KOG0443|consen 551 KTGSSVYLWCGKGSSGDEREMAKRVLDLLK------RCQSTAVKEG-----SEPDEFWELLGGKAEYPSSKRL---EEKP 616 (827)
T ss_pred ecCCeEEEEeCCCCCHHHHHHHHHHHHHHh------cCChhhhhcC-----CCchhhHHHcCCCCCCCcCccc---cccC
Confidence 999999999999999999999999999997 3666778888 4899999999999999765431 1122
Q ss_pred CCCCeEEEEe--CCceEEEEcc-ccccccCCCcEEEeeCCCeEEEEEcCCCCHHHHHHHHHHHHHHHHhc---CCCCCce
Q 002004 251 TTPPKLYSIE--DSQVKIVEGE-LSKSMLENNKCYLLDRGSEVFVWVGRVTQVEERKAASQAAEEFISSQ---NRPKSIR 324 (983)
Q Consensus 251 ~~~~rLy~v~--~G~l~~~e~~-l~q~~L~~~~vyILD~g~eIyVWiGk~as~~eRk~A~~~A~~y~~~~---~rp~~t~ 324 (983)
...||||.|+ .|.|++.|+. |+|+||.++|+|||||+++||||+|+.++.+||..|+.+|+.|++.+ +|...||
T Consensus 617 ~~~PrLF~Cs~~~g~f~~~EI~~F~QdDL~tdDi~lLDt~~evfvWvG~~a~~~eK~~Al~~~~~yl~~~~p~gr~~~TP 696 (827)
T KOG0443|consen 617 ERDPRLFSCSNKTGSFVVEEIYNFTQDDLMTDDIMLLDTWSEVFVWVGQEANEKEKEEALTIGQKYLETDLPEGRDPRTP 696 (827)
T ss_pred CCCCcEEEEEecCCcEEEEEecCcchhhccccceEEEecCceEEEEecCCCChhHHHHHHHHHHHHHhccCcccCCCCCc
Confidence 4457999887 7999999998 99999999999999999999999999999999999999999999766 5655699
Q ss_pred EEEecCCCCChhhhhcccCCccCC
Q 002004 325 ITRVIQGYETYAFKSNFDSWPSGS 348 (983)
Q Consensus 325 i~~V~eG~Ep~~FK~~F~~W~~~~ 348 (983)
|++|.||+||+.|+.+|.+|+...
T Consensus 697 I~vV~qG~EPp~Ftg~F~~WD~~k 720 (827)
T KOG0443|consen 697 IYVVKQGHEPPFFTGFFLSWDPSK 720 (827)
T ss_pred eEEecCCCCCChhhccccccCCcc
Confidence 999999999999999999999876
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=100.00 E-value=1.7e-48 Score=439.07 Aligned_cols=320 Identities=26% Similarity=0.472 Sum_probs=282.7
Q ss_pred ccEEEEEEeCCccccCCCCccceeeeCcEEEEEEeeecCCCCceeEEEEEccCCCChHHHHHHHHHHHHHHHHcCCCCeE
Q 002004 392 GKMEVWRINGSAKTSLPKEDIGKFYSGDCYIVLYTYHSGDRKEDYFLCCWFGKDSIEEDQKMATRLANTMCNSLKGRPVQ 471 (983)
Q Consensus 392 G~l~VWRIe~~~~~~v~~~~~G~FysgDcYIVlytY~~~~~k~~~~iy~W~G~~ss~de~~~aa~~a~eL~~~l~g~~vq 471 (983)
..+.||.|++|.+..+++..||+||.+||||||.|.....|..+|.||||+|.+|+.|.++++|++|+.|.+.|+..|..
T Consensus 501 pGltiWeIENF~P~~~eEafHGkFYeaDcYiVLKT~~ddsG~L~weIfyWiG~eAtLDK~aCsAiHAVnLRN~LgA~CRT 580 (1255)
T KOG0444|consen 501 PGLTIWEIENFYPSIMEEAFHGKFYEADCYIVLKTTRDDSGQLRWEIFYWIGEEATLDKGACSAIHAVNLRNHLGATCRT 580 (1255)
T ss_pred CCceEEeehhhhhHHHHHHhccceecccEEEEEEeecccccccceeEEEEecccccccchhhhHHHhhhhhhhhCchhhh
Confidence 36999999999999999999999999999999999977788999999999999999999999999999999999999999
Q ss_pred EEeecCCCCHHHHhhcCC-eEEEeCc-cccCCccccccCCCCCccccCCceeEEEEEecCCCceEEEEeccCcCCCCCCC
Q 002004 472 GRIFQGREPPQFVALFQP-MVVVKGG-LCSGYKKSLADKGLTDETYTADSIALIRISGTSIHNNKTEQVDAVATSLNSSE 549 (983)
Q Consensus 472 ~Rv~qGkEp~~Fl~iF~~-~iI~~GG-~~s~~~~~~~~~~~~~~~y~~~~~~Lf~V~G~~~~~~~aveV~~~assLnS~d 549 (983)
+|+.||.|+.+||++|+. ++++.|| +.+||... ++. ..-+|||+|.+.+ .++..--|++...||+.++
T Consensus 581 vREEmgDEsEeFL~lF~~ei~YIEGGrTasGFYT~------E~~---~h~TRlYrv~~~g-~~i~lEPVpl~~tSLDPRf 650 (1255)
T KOG0444|consen 581 VREEMGDESEEFLTLFGEEIVYIEGGRTASGFYTT------EKP---AHLTRLYRVGVNG-TAIELEPVPLSVTSLDPRF 650 (1255)
T ss_pred hHHhhCccHHHHHHHhcceeEEEecCceecceeee------cch---HHhhhhheecccc-ceeEeeccCccccccCcce
Confidence 999999999999999995 8889999 88998742 111 1236999999854 3566667888899999999
Q ss_pred eEEeeeCCeEEEEECCCCCHHHHHHHHHHHHHhCC-----CceEEecccCCCccccccccCCCcCCCCCCC---CCC--C
Q 002004 550 CFLLQSGSTMFTWHGNQSTFEQQQLAAKVAEFLKP-----GVAIKHAKEGTESSAFWFPLGGKQSYTSKKV---SPE--I 619 (983)
Q Consensus 550 ~FIL~~~~~iyvW~G~~ss~~er~~A~~va~~l~~-----~~~~~~v~EG~E~~~FW~~LGgk~~y~~~~~---~~~--~ 619 (983)
||+|+.|.+||||.|..|.-.--.+|+.+|+.|.. ..+|..+.+|+|+++||.+|||.+.-+.... .++ .
T Consensus 651 ~FlLD~G~~IyiW~G~~s~~t~~~KARLfAEkinK~eRKgK~EI~l~rQg~e~pEFWqaLgg~p~e~~~~ikeHVPEdf~ 730 (1255)
T KOG0444|consen 651 CFLLDAGETIYIWSGYKSRITVSNKARLFAEKINKRERKGKSEIELCRQGREPPEFWQALGGNPDEPQGAIKEHVPEDFV 730 (1255)
T ss_pred EEEEeCCceEEEEeccchhcccchHHHHHHHHhhhhhccCceeeehhhhcCCCHHHHHHhCCCCcccccchhhcCCcccC
Confidence 99999999999999999988888889999998863 3589999999999999999999876544321 222 3
Q ss_pred CCCCcEEEEEecCCceeEeeec-----ccCccCCCCCCEEEEeCCCEEEEEEcCCCCHHHHHHHHHHHHHHHhhhcccCC
Q 002004 620 VRDPHLFTFSFNKGAFQVEEVY-----NFSQDDLLTEDILILDTHAEVFVWVGQSVDSKEKQSAFEFGQNYIDMATSLEG 694 (983)
Q Consensus 620 ~~~prLF~~s~~~G~~~v~EI~-----~F~QdDL~~~dv~ILD~~~eIfVWiG~~a~~~ek~~Al~~A~~Yl~~~~~~~~ 694 (983)
+.+|+||.+....|++.+..|. ..+|+-|.+..||||||++.||||||+.++.-.|..|+++.++...+. .
T Consensus 731 p~qpkLYkV~lGmGyLELPQvel~P~~~l~q~lL~sk~VyiLDc~sDiF~W~GkKs~RLvraAa~KL~~EL~~M~----d 806 (1255)
T KOG0444|consen 731 PEQPKLYKVNLGMGYLELPQVELLPKGILKQDLLGSKGVYILDCNSDIFLWIGKKSNRLVRAAAQKLVVELHQMI----D 806 (1255)
T ss_pred CCCcceEEEccccceeecchhhhchhhHHHHHhhcCCeEEEEecCCceEEEecccchHHHHHHHHHHHHHHHhhh----c
Confidence 5789999999999999988873 588999999999999999999999999999999999999999998874 5
Q ss_pred CCCCCcEEEecCCCCCccccccee-cCCCccc
Q 002004 695 LSPKVPLYKVTEGNEPCFCTTFFS-WDPTKAT 725 (983)
Q Consensus 695 r~~~~pI~~V~qG~EP~~Ft~~F~-Wd~~k~~ 725 (983)
|+....|+++.+|.|...|+..|. ||.....
T Consensus 807 RPdyA~V~R~~EG~E~q~FrsKFagWDev~~V 838 (1255)
T KOG0444|consen 807 RPDYAQVYRETEGEESQMFRSKFAGWDEVVPV 838 (1255)
T ss_pred CcchhheeeccCccHHHHHHHhhCCcceeeee
Confidence 778899999999999999999999 9986544
No 6
>KOG0445 consensus Actin regulatory protein supervillin (gelsolin/villin family) [Cytoskeleton]
Probab=100.00 E-value=2.1e-40 Score=374.90 Aligned_cols=332 Identities=26% Similarity=0.417 Sum_probs=264.4
Q ss_pred cEEEEEEECceeeeCCCCCcCeeeeCcEEEEEEeecC---------------CCCCceEEEEEEecCCCChhhHhhHHHH
Q 002004 20 GTEIWRIENFQPVPLPKSEHGKFYMGDCYIVLQTTPG---------------KGGAYLYDIHFWIGKDTSQDEAGTAAIK 84 (983)
Q Consensus 20 gl~IWrIe~~~~v~vp~~~~G~Fysgd~YIVL~t~~~---------------~~~~~~~~Ih~W~G~~ss~de~g~AA~~ 84 (983)
.+.+|.|.+|....+| .+||+||++|||||.+.|.- ..|+.+..+|||+|.+++..|+|+||++
T Consensus 524 s~d~W~i~ef~~~~~~-~~~ghF~s~~~YvvrWky~Is~~Vr~~~~g~~~~r~~Gr~rcvyf~WqG~hst~~ekG~~AL~ 602 (919)
T KOG0445|consen 524 SVDVWHILEFDYSRLP-QSIGHFHSGDAYVVRWKYMISTAVRSRQKGEHSVRAAGRERCVYFFWQGRHSTVSEKGTSALM 602 (919)
T ss_pred cccceeeehhhhhhhh-hhhhccccCceEEEEEEEEeehhhhhhhcCccchhhcccceEEEEEEccccCCcccccceeee
Confidence 5789999999999999 79999999999999998751 2567889999999999999999999999
Q ss_pred HHHHHHHhCCCceEEEeeccCCCHHHHhhcCCcEEEecCcccCCCccccccccccEEEEEeccee--EEEEEecCCcCCc
Q 002004 85 TVELDAVLGGRAVQHRELQGHESDKFLSYFKPCIIPLEGGVASGFRKTEEEEFETRLYVCKGKRV--VRMKQVPFARSSL 162 (983)
Q Consensus 85 tveLd~~lgg~~vq~Re~QG~Es~~Fls~Fk~~ii~~~Gg~~sgf~~~e~~~~~~rLy~vkGk~~--v~~~eV~~s~sSL 162 (983)
|+|||+.-| .|+|+.||+||++||++|.|+|.++.|-.. ...-|||+|+|... ..++||.+..|+|
T Consensus 603 tvElD~e~g---aqvrv~qG~Ep~~Fl~lF~g~m~vhsgr~E---------~~~erlY~v~G~vs~Et~l~Ev~c~~S~L 670 (919)
T KOG0445|consen 603 TVELDEERG---AQVRVLQGKEPPCFLQLFQGGMVVHSGRRE---------EEEERLYCVRGEVSVETNLLEVACHCSSL 670 (919)
T ss_pred eeeeccccC---ceeEeecCCCccHHHHHhcCCeeEEcCchh---------hchhheeeEecccccchhhhHhhhccccc
Confidence 999999776 699999999999999999999999887532 22457999999854 4778999999999
Q ss_pred CCCCceEEeCCC--eEEEEcCCCCCHHHHHHHHHHHHHHhhccCC--CCccEEEEeCCCCCCCCChhhHHHHhCCCCCCC
Q 002004 163 NHDDVFILDTKD--KIYQFNGANSNIQERAKALEVIQFLKEKYHD--GNCNVAIVDDGKLDTESDSGEFWVLFGGFAPIG 238 (983)
Q Consensus 163 Ns~DvFILd~~~--~Iy~W~G~~Sn~~ER~kA~~la~~Ik~~~~~--G~~~I~~VdeG~~~~~~E~~eFw~~LGg~~~~~ 238 (983)
.|...+|+..++ .||+|+|.++-...|..+..+|+.|+.+..+ |++.++.||+|. ++..||++||-+.
T Consensus 671 RSr~smv~~~~~~~~~~~whg~k~~~ht~~v~v~aa~~~~~q~pgs~~~~~~~Eveegs-----~~~~~~~alGrkd--- 742 (919)
T KOG0445|consen 671 RSRTSMVVLNVNKALIYLWHGCKAQAHTKEVGVTAANKIKEQCPGSSSKVTIHEVEEGS-----EPLGFWDALGRKD--- 742 (919)
T ss_pred cccceEEEEeccccceEEEecccCCcchhhHhHHHHHHHHHhCCCccccceeEeecCCC-----Cchhhhhhccccc---
Confidence 999999998654 6999999999999999999999999988664 556788899884 8899999998542
Q ss_pred CCCCCcccccccCCCCeEEEEeCCc-eEE-----EEccccccccCCCcEEEeeCCCeEEEEEcCCCCHHHHHHHHHHHHH
Q 002004 239 KKVATEDDVIAETTPPKLYSIEDSQ-VKI-----VEGELSKSMLENNKCYLLDRGSEVFVWVGRVTQVEERKAASQAAEE 312 (983)
Q Consensus 239 ~~~~~~~~~~~~~~~~rLy~v~~G~-l~~-----~e~~l~q~~L~~~~vyILD~g~eIyVWiGk~as~~eRk~A~~~A~~ 312 (983)
....+|||-.++-+ .++ +...|+|++|.+- ||||.|.++|+|. ...+|+.||++|.+
T Consensus 743 -----------f~~~~RlF~~sS~qa~els~p~rc~~pFsQ~~Ly~a--fLvD~gdelwLW~----w~s~r~~Aleta~~ 805 (919)
T KOG0445|consen 743 -----------FNFAPRLFILSSSQATELSYPARCPMPFSQEDLYSA--FLVDNGDELWLWQ----WASDRKSALETALQ 805 (919)
T ss_pred -----------ccccceeeeccchhhhhccCcccCCCcccHHHHhhh--eeeccCCeeEeeh----hhhHHHHHHHHHHH
Confidence 34678999776332 111 1123899999865 9999999999999 78899999999999
Q ss_pred HHHhcCCCCCceEEEecCCCCChhhhhcccCCccCCCCCCCcc-cchhhHHhh---hhccccccccCCCCCCCCCCCCcc
Q 002004 313 FISSQNRPKSIRITRVIQGYETYAFKSNFDSWPSGSTAPGAEE-GRGKVAALL---KQQGVGIKGMGKSTPTNEEVPPLL 388 (983)
Q Consensus 313 y~~~~~rp~~t~i~~V~eG~Ep~~FK~~F~~W~~~~~~~~~~~-~rgkva~~~---~~~~~dv~~l~~~~P~~~e~~~~~ 388 (983)
|++... .|-.+|..|.||..||.+|.+|....+.-.... ...-+..++ .+.-+.. .++.++|.++.+.|.
T Consensus 806 Ywk~~~----~p~~vV~aGlEPl~Fk~lFp~We~red~D~~~s~~i~~v~d~La~~c~T~ypl-e~l~arpLPeGvdp~- 879 (919)
T KOG0445|consen 806 YWKNLK----APSYVVHAGLEPLTFKNLFPSWEHREDIDTEVSNQITLVEDVLAKLCKTIYPL-EDLLARPLPEGVDPL- 879 (919)
T ss_pred HHhccC----CCceEEEcCcChhhhhhhCCCceeccccCCCcCCchhHHHHHHHHHhhhcChH-HHHhcCCCCCCCCch-
Confidence 999433 346889999999999999999998754311111 111111122 2223333 344678888877665
Q ss_pred cCCccEEEEEE
Q 002004 389 EGGGKMEVWRI 399 (983)
Q Consensus 389 d~sG~l~VWRI 399 (983)
.|+||--
T Consensus 880 ----rLE~YLt 886 (919)
T KOG0445|consen 880 ----RLEIYLT 886 (919)
T ss_pred ----hheeeec
Confidence 5666654
No 7
>PF02209 VHP: Villin headpiece domain; InterPro: IPR003128 Villin is an F-actin bundling protein involved in the maintenance of the microvilli of the absorptive epithelia. The villin-type "headpiece" domain is a modular motif found at the extreme C terminus of larger "core" domains in over 25 cytoskeletal proteins in plants and animals, often in assocation with the Gelsolin repeat. Although the headpiece is classified as an F-actin-binding domain, it has been shown that not all headpiece domains are intrinsically F-actin-binding motifs, surface charge distribution may be an important element for F-actin recognition []. An autonomously folding, 35 residue, thermostable subdomain (HP36) of the full-length 76 amino acid residue villin headpiece, is the smallest known example of a cooperatively folded domain of a naturally occurring protein. The structure of HP36, as determined by NMR spectroscopy, consists of three short helices surrounding a tightly packed hydrophobic core []. ; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1ZV6_A 1QZP_A 1UND_A 2PPZ_A 3TJW_B 1YU8_X 2JM0_A 1WY4_A 3MYC_A 1YU5_X ....
Probab=99.67 E-value=2.5e-17 Score=123.38 Aligned_cols=36 Identities=69% Similarity=1.199 Sum_probs=31.8
Q ss_pred CCCHHHHHHHhCCCHHHHhcCchhhHhhhhhhcCCC
Q 002004 948 YLSDEEFQTVFGMMKEAFYKLPKWKQDMQKKKFDLF 983 (983)
Q Consensus 948 yLs~~~F~~~f~m~~~~f~~lp~Wkq~~~Kk~~~Lf 983 (983)
||||+||++||||+|+||++||+|||++|||++|||
T Consensus 1 YLsd~dF~~vFgm~~~eF~~lP~WKq~~lKK~~~LF 36 (36)
T PF02209_consen 1 YLSDEDFEKVFGMSREEFYKLPKWKQNNLKKKAGLF 36 (36)
T ss_dssp GS-HHHHHHHHSS-HHHHHHS-HHHHHHHHHHTTT-
T ss_pred CcCHHHHHHHHCCCHHHHHHChHHHHHHHHHHhCCC
Confidence 899999999999999999999999999999999999
No 8
>smart00153 VHP Villin headpiece domain.
Probab=99.66 E-value=4.1e-17 Score=122.64 Aligned_cols=36 Identities=67% Similarity=1.207 Sum_probs=35.7
Q ss_pred CCCHHHHHHHhCCCHHHHhcCchhhHhhhhhhcCCC
Q 002004 948 YLSDEEFQTVFGMMKEAFYKLPKWKQDMQKKKFDLF 983 (983)
Q Consensus 948 yLs~~~F~~~f~m~~~~f~~lp~Wkq~~~Kk~~~Lf 983 (983)
||||+||++||||+|+||++||+|||++|||+++||
T Consensus 1 yLsdeeF~~vfgmsr~eF~~LP~WKq~~lKk~~~LF 36 (36)
T smart00153 1 YLSDEDFEEVFGMTREEFYKLPLWKQNQLKKKLGLF 36 (36)
T ss_pred CCCHHHHHHHHCCCHHHHHhCcHhhHHHHHhhcCCC
Confidence 899999999999999999999999999999999998
No 9
>smart00262 GEL Gelsolin homology domain. Gelsolin/severin/villin homology domain. Calcium-binding and actin-binding. Both intra- and extracellular domains.
Probab=99.65 E-value=6.5e-16 Score=141.69 Aligned_cols=88 Identities=45% Similarity=0.764 Sum_probs=82.5
Q ss_pred EEEEecceeEEEEEecCCcCCcCCCCceEEeCCCeEEEEcCCCCCHHHHHHHHHHHHHHhhccCCCCccEEEEeCCCCCC
Q 002004 141 LYVCKGKRVVRMKQVPFARSSLNHDDVFILDTKDKIYQFNGANSNIQERAKALEVIQFLKEKYHDGNCNVAIVDDGKLDT 220 (983)
Q Consensus 141 Ly~vkGk~~v~~~eV~~s~sSLNs~DvFILd~~~~Iy~W~G~~Sn~~ER~kA~~la~~Ik~~~~~G~~~I~~VdeG~~~~ 220 (983)
+++++|...+.+.+|++++++||++||||||++..||+|+|++|+..||.+|+++|+.+....+.+.++|.+|++|.
T Consensus 2 ~~~~~g~~~~~~~~~~~~~~~L~s~d~fild~~~~iyvW~G~~as~~ek~~A~~~a~~~~~~~~~~~~~i~~v~eg~--- 78 (90)
T smart00262 2 LVRVKGKRNVRVPEVPFSQGSLNSGDCYILDTGSEIYVWVGKKSSQDEKKKAAELAVELDDTLGPGPVQVRVVDEGK--- 78 (90)
T ss_pred eEEEeCCceEEEEEcCCCHHHCCCCCEEEEECCCEEEEEECCCCCHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCC---
Confidence 68899999999999999999999999999999999999999999999999999999999987776778999999985
Q ss_pred CCChhhHHHHhCC
Q 002004 221 ESDSGEFWVLFGG 233 (983)
Q Consensus 221 ~~E~~eFw~~LGg 233 (983)
|+.+||.+||+
T Consensus 79 --E~~~F~~~f~~ 89 (90)
T smart00262 79 --EPPEFWSLFGG 89 (90)
T ss_pred --CCHHHHHHhCC
Confidence 78899999986
No 10
>smart00262 GEL Gelsolin homology domain. Gelsolin/severin/villin homology domain. Calcium-binding and actin-binding. Both intra- and extracellular domains.
Probab=99.64 E-value=9.7e-16 Score=140.55 Aligned_cols=80 Identities=35% Similarity=0.670 Sum_probs=73.0
Q ss_pred eEEEEccccccccCCCcEEEeeCCCeEEEEEcCCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEecCCCCChhhhhcccC
Q 002004 264 VKIVEGELSKSMLENNKCYLLDRGSEVFVWVGRVTQVEERKAASQAAEEFISSQNRPKSIRITRVIQGYETYAFKSNFDS 343 (983)
Q Consensus 264 l~~~e~~l~q~~L~~~~vyILD~g~eIyVWiGk~as~~eRk~A~~~A~~y~~~~~rp~~t~i~~V~eG~Ep~~FK~~F~~ 343 (983)
..+.++.+.+++|++++|||||++++||||+|++++..+|..|+..|+.|++..+ +.+++|.+|.||.||..|+.+|.+
T Consensus 11 ~~~~~~~~~~~~L~s~d~fild~~~~iyvW~G~~as~~ek~~A~~~a~~~~~~~~-~~~~~i~~v~eg~E~~~F~~~f~~ 89 (90)
T smart00262 11 VRVPEVPFSQGSLNSGDCYILDTGSEIYVWVGKKSSQDEKKKAAELAVELDDTLG-PGPVQVRVVDEGKEPPEFWSLFGG 89 (90)
T ss_pred EEEEEcCCCHHHCCCCCEEEEECCCEEEEEECCCCCHHHHHHHHHHHHHHHHhcC-CCCceEEEEeCCCCCHHHHHHhCC
Confidence 3344456999999999999999999999999999999999999999999998765 667999999999999999999999
Q ss_pred C
Q 002004 344 W 344 (983)
Q Consensus 344 W 344 (983)
|
T Consensus 90 ~ 90 (90)
T smart00262 90 W 90 (90)
T ss_pred C
Confidence 8
No 11
>KOG1044 consensus Actin-binding LIM Zn-finger protein Limatin involved in axon guidance [Signal transduction mechanisms; Cytoskeleton]
Probab=99.49 E-value=9.9e-15 Score=166.00 Aligned_cols=63 Identities=35% Similarity=0.598 Sum_probs=60.3
Q ss_pred CcccChHHHhhcc---CCCCCCCCccccccCCCHHHHHHHhCCCHHHHhcCchhhHhhhhhhcCCC
Q 002004 921 RSTFSYDQLKARS---DNPVTGIDFKRREAYLSDEEFQTVFGMMKEAFYKLPKWKQDMQKKKFDLF 983 (983)
Q Consensus 921 ~~~~~~~~l~~~~---~~~p~~vd~~~~E~yLs~~~F~~~f~m~~~~f~~lp~Wkq~~~Kk~~~Lf 983 (983)
.++|||+.|+.++ .+||++||++++|+||+.|||.+||||+.+||++||.||||+|||+++||
T Consensus 605 ~KiypYe~L~vTnrgr~klp~dVDRtrLERHL~~e~F~eiF~MSi~EF~rL~LWkRnnlKkkAkLF 670 (670)
T KOG1044|consen 605 PKIYPYEMLMVTNRGRNKLPRDVDRTRLERHLSPEDFSEIFGMSISEFDRLPLWKRNNLKKKAKLF 670 (670)
T ss_pred ccccChHHheecccccccCcccchhhHHhhccCHHHHHHHhccCHhhhchhhhhhhhhhhhhhccC
Confidence 5799999999555 89999999999999999999999999999999999999999999999999
No 12
>PF00626 Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gelsolin is a cytoplasmic, calcium-regulated, actin-modulating protein that binds to the barbed ends of actin filaments, preventing monomer exchange (end-blocking or capping) []. It can promote nucleation (the assembly of monomers into filaments), as well as sever existing filaments. In addition, this protein binds with high affinity to fibronectin. Plasma gelsolin and cytoplasmic gelsolin are derived from a single gene by alternate initiation sites and differential splicing. Sequence comparisons indicate an evolutionary relationship between gelsolin, villin, fragmin and severin []. Six large repeating segments occur in gelsolin and villin, and 3 similar segments in severin and fragmin. While the multiple repeats have yet to be related to any known function of the actin-severing proteins, the superfamily appears to have evolved from an ancestral sequence of 120 to 130 amino acid residues [].; PDB: 3FG6_F 1RGI_G 2FGH_A 1D0N_B 3EGD_B 2NUP_B 2NUT_B 3EGX_B 1JHW_A 1J72_A ....
Probab=99.32 E-value=2.2e-12 Score=114.20 Aligned_cols=69 Identities=42% Similarity=0.706 Sum_probs=63.7
Q ss_pred ccccccccCCCcEEEeeCCCeEEEEEcCCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEecCCCCChhhh
Q 002004 269 GELSKSMLENNKCYLLDRGSEVFVWVGRVTQVEERKAASQAAEEFISSQNRPKSIRITRVIQGYETYAFK 338 (983)
Q Consensus 269 ~~l~q~~L~~~~vyILD~g~eIyVWiGk~as~~eRk~A~~~A~~y~~~~~rp~~t~i~~V~eG~Ep~~FK 338 (983)
..+++++|++++|||||++.+||||+|++++..+|..|+..|+++. ...|+.++.+.++.+|.||..|-
T Consensus 8 ~~~s~~~L~s~~~yIld~~~~i~vW~G~~~~~~e~~~a~~~a~~~~-~~~~~~~~~~~~~~eg~E~~~F~ 76 (76)
T PF00626_consen 8 VPLSQSSLNSDDCYILDCGYEIFVWVGKKSSPEEKAFAAQLAQELL-SEERPPLPEVIRVEEGKEPAEFL 76 (76)
T ss_dssp ESSSGGGEETTSEEEEEESSEEEEEEHTTSHHHHHHHHHHHHHHHH-HHHTTTTSEEEEEETTHHHHHHH
T ss_pred CCCCHHHcCCCCEEEEEeCCCcEEEEeccCCHHHHHHHHHHHHHhh-hhcCCCCCEEEEecCCCCChHHC
Confidence 3499999999999999999999999999999999999999999988 44677788999999999999983
No 13
>PF00626 Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gelsolin is a cytoplasmic, calcium-regulated, actin-modulating protein that binds to the barbed ends of actin filaments, preventing monomer exchange (end-blocking or capping) []. It can promote nucleation (the assembly of monomers into filaments), as well as sever existing filaments. In addition, this protein binds with high affinity to fibronectin. Plasma gelsolin and cytoplasmic gelsolin are derived from a single gene by alternate initiation sites and differential splicing. Sequence comparisons indicate an evolutionary relationship between gelsolin, villin, fragmin and severin []. Six large repeating segments occur in gelsolin and villin, and 3 similar segments in severin and fragmin. While the multiple repeats have yet to be related to any known function of the actin-severing proteins, the superfamily appears to have evolved from an ancestral sequence of 120 to 130 amino acid residues [].; PDB: 3FG6_F 1RGI_G 2FGH_A 1D0N_B 3EGD_B 2NUP_B 2NUT_B 3EGX_B 1JHW_A 1J72_A ....
Probab=99.29 E-value=4.4e-12 Score=112.21 Aligned_cols=74 Identities=38% Similarity=0.512 Sum_probs=68.2
Q ss_pred EEEEEecCCcCCcCCCCceEEeCCCeEEEEcCCCCCHHHHHHHHHHHHHHhhccCCCCccEEEEeCCCCCCCCChhhHH
Q 002004 150 VRMKQVPFARSSLNHDDVFILDTKDKIYQFNGANSNIQERAKALEVIQFLKEKYHDGNCNVAIVDDGKLDTESDSGEFW 228 (983)
Q Consensus 150 v~~~eV~~s~sSLNs~DvFILd~~~~Iy~W~G~~Sn~~ER~kA~~la~~Ik~~~~~G~~~I~~VdeG~~~~~~E~~eFw 228 (983)
+++.++++++++||++||||||++..||+|.|+.++..||.+|+.+|+.|...++.+.+.+..+++|+ |+..||
T Consensus 3 ~~~~~~~~s~~~L~s~~~yIld~~~~i~vW~G~~~~~~e~~~a~~~a~~~~~~~~~~~~~~~~~~eg~-----E~~~F~ 76 (76)
T PF00626_consen 3 VRPEQVPLSQSSLNSDDCYILDCGYEIFVWVGKKSSPEEKAFAAQLAQELLSEERPPLPEVIRVEEGK-----EPAEFL 76 (76)
T ss_dssp EEEEEESSSGGGEETTSEEEEEESSEEEEEEHTTSHHHHHHHHHHHHHHHHHHHTTTTSEEEEEETTH-----HHHHHH
T ss_pred ccCCcCCCCHHHcCCCCEEEEEeCCCcEEEEeccCCHHHHHHHHHHHHHhhhhcCCCCCEEEEecCCC-----CChHHC
Confidence 56788999999999999999999999999999999999999999999999955677889999999995 788887
No 14
>COG5028 Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]
Probab=96.47 E-value=0.0082 Score=72.58 Aligned_cols=117 Identities=21% Similarity=0.307 Sum_probs=78.1
Q ss_pred CCCcEEEEEe---cC-----CceeEeeecccCccCCCCCCEEEEeCCCEEEEEEcCCCCHHHHHHHHHH-----------
Q 002004 621 RDPHLFTFSF---NK-----GAFQVEEVYNFSQDDLLTEDILILDTHAEVFVWVGQSVDSKEKQSAFEF----------- 681 (983)
Q Consensus 621 ~~prLF~~s~---~~-----G~~~v~EI~~F~QdDL~~~dv~ILD~~~eIfVWiG~~a~~~ek~~Al~~----------- 681 (983)
..|+||.+-+ +. |.++...--|.+-+-|.+..+||||+|.+||+|+|+.+++......+..
T Consensus 708 iYP~lyalHdm~~e~~l~~~~~~~~~~piNaT~s~le~~GlYLidtg~~iflw~g~d~~p~Ll~dlf~~~~~~~I~~~k~ 787 (861)
T COG5028 708 IYPTLYALHDMPIEAGLPDEGLLVLPSPINATSSLLESGGLYLIDTGQKIFLWFGKDAVPSLLQDLFGVDSLSDIPSGKF 787 (861)
T ss_pred hccceeeecccccccCCCcccccccccchhhhHHHHhcCCeEEEEcCCEEEEEecCCCCHHHHHHhcCcchhhhcccccc
Confidence 5688987652 22 2222222347888999999999999999999999999998655444332
Q ss_pred ------------HHHHHhhhcccCCCCCCCcEEEecCCCCCccccccee--cCCCcccccCchHHHHHHHHhc
Q 002004 682 ------------GQNYIDMATSLEGLSPKVPLYKVTEGNEPCFCTTFFS--WDPTKATVQGNSFQKKVALLFG 740 (983)
Q Consensus 682 ------------A~~Yl~~~~~~~~r~~~~pI~~V~qG~EP~~Ft~~F~--Wd~~k~~~~~~s~~~~~~~~~~ 740 (983)
+.+-|..-.. ......-|+++|++|.+|. ...||. -=..+.. ++-||.+.|.+++.
T Consensus 788 ~~p~~~n~~n~~v~~iI~~lrs-~~~~~tl~lvlVR~~~d~s-~~~~~~s~lVEDk~~-n~~SY~~yL~~lh~ 857 (861)
T COG5028 788 TLPPTGNEFNERVRNIIGELRS-VNDDSTLPLVLVRGGGDPS-LRLWFFSTLVEDKTL-NIPSYLDYLQILHE 857 (861)
T ss_pred ccCCcCCHHHHHHHHHHHHHHh-hCCCCccceEEEecCCCcc-hhhheehheeccccc-CCccHHHHHHHHHH
Confidence 2222222111 0234566799999999998 555553 3334444 48999999988864
No 15
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.98 E-value=0.029 Score=68.74 Aligned_cols=111 Identities=23% Similarity=0.275 Sum_probs=74.7
Q ss_pred CCCcEEEEEec--CCceeEe--eecccCccCCCCCCEEEEeCCCEEEEEEcCCCCHHHHH--------------------
Q 002004 621 RDPHLFTFSFN--KGAFQVE--EVYNFSQDDLLTEDILILDTHAEVFVWVGQSVDSKEKQ-------------------- 676 (983)
Q Consensus 621 ~~prLF~~s~~--~G~~~v~--EI~~F~QdDL~~~dv~ILD~~~eIfVWiG~~a~~~ek~-------------------- 676 (983)
..|||+.+.+- ...+... .-...+-+-|..++|||||.|..+|||||+.++....+
T Consensus 857 ~YPrl~p~hdl~i~dtl~~~~p~~VraS~e~l~negiYll~nG~~~ylwvg~sv~~~llQ~lf~V~s~~~i~s~~~~Lpe 936 (1007)
T KOG1984|consen 857 FYPRLLPFHDLDIEDTLEFVLPKAVRASSEFLSNEGIYLLDNGQKIYLWVGESVDPDLLQDLFSVSSFEQIDSQSGVLPE 936 (1007)
T ss_pred hccceeeeeccccccccccccccceecchhhccCCceEEEecCcEEEEEecCCCCHHHHHHHhcCccccccccccccccc
Confidence 67999887743 2222111 11367888999999999999999999999999864332
Q ss_pred ------HHHHHHHHHHhhhcccCCCCCCCcEEEecCCCCCccccccee-cCCCcccccCchHHHHHHHH
Q 002004 677 ------SAFEFGQNYIDMATSLEGLSPKVPLYKVTEGNEPCFCTTFFS-WDPTKATVQGNSFQKKVALL 738 (983)
Q Consensus 677 ------~Al~~A~~Yl~~~~~~~~r~~~~pI~~V~qG~EP~~Ft~~F~-Wd~~k~~~~~~s~~~~~~~~ 738 (983)
..+.-+..+|++ -|+...|+.+|++|.++.. ..|. ---.....++.||-..|.++
T Consensus 937 ~dn~lS~k~r~~i~~i~~-----~r~~~l~v~~~k~g~~~~~--~~~~~~lved~~~~~~sY~dyL~~~ 998 (1007)
T KOG1984|consen 937 LDNPLSRKVRNVISLIRR-----QRSSELPVVLVKQGLDGSE--VEFSEYLVEDRGRNISSYVDYLCEL 998 (1007)
T ss_pred cCcHHHHHHHHHHHHHHh-----ccccccccEEEecCCCchh--hhhhhhhhcccccCccccchHHHHH
Confidence 233344456665 2567899999999999886 3332 22222233468888777665
No 16
>PTZ00395 Sec24-related protein; Provisional
Probab=95.33 E-value=0.057 Score=69.36 Aligned_cols=116 Identities=14% Similarity=0.242 Sum_probs=69.7
Q ss_pred CCCcEEEEEec-----------CCceeEeeecccCccCCCCCCEEEEeCCCEEEEEEcCCCCHHHHHHHHH---------
Q 002004 621 RDPHLFTFSFN-----------KGAFQVEEVYNFSQDDLLTEDILILDTHAEVFVWVGQSVDSKEKQSAFE--------- 680 (983)
Q Consensus 621 ~~prLF~~s~~-----------~G~~~v~EI~~F~QdDL~~~dv~ILD~~~eIfVWiG~~a~~~ek~~Al~--------- 680 (983)
..||||.+.+- .+.+.+..-.+.+.+-|..+.|||||+|..||||||+.+++..-+.-+-
T Consensus 1403 LYPRLYpLHdL~~e~e~d~~d~d~~ivLPp~LrLS~ErLesdGIYLLDNGe~IyLWVG~~V~PqLLqDLFGv~~~~~~~~ 1482 (1560)
T PTZ00395 1403 VYPVMYVIHIKGKTNEIDSMDVDDDLFIPKTIPSSAEKIYSNGIYLLDACTHFYLYFGFHSDANFAKEIVGDIPTEKNAH 1482 (1560)
T ss_pred hcCceEEcccccccccCCccCCCCccccCCcccchHHHhcCCcEEEEECCCEEEEEECCCCCHHHHHHHcCCCccccccc
Confidence 57999987541 1222233334678888999999999999999999999998754332221
Q ss_pred --------H---HHHHHhhhcccCCCCCCCcEEEecCC--CCCcccccceecCCCcccccCchHHHHHHHHhc
Q 002004 681 --------F---GQNYIDMATSLEGLSPKVPLYKVTEG--NEPCFCTTFFSWDPTKATVQGNSFQKKVALLFG 740 (983)
Q Consensus 681 --------~---A~~Yl~~~~~~~~r~~~~pI~~V~qG--~EP~~Ft~~F~Wd~~k~~~~~~s~~~~~~~~~~ 740 (983)
+ +...|+.......+.+..||++|.++ .|+. |..++. ++. .. ...||.+.|..|..
T Consensus 1483 eLPelDT~iS~RVrnII~~LR~~r~~~~Y~pL~IVRqgDp~E~~-F~s~LV-EDR-s~-g~~SYvDFLc~LHK 1551 (1560)
T PTZ00395 1483 ELNLTDTPNAQKVQRIIKNLSRIHHFNKYVPLVMVAPKSNEEEH-LISLCV-EDK-AD-KEYSYVNFLCFIHK 1551 (1560)
T ss_pred cccCCCCHHHHHHHHHHHHHHHhccCCCcceEEEEeCCCchHHH-HHHhCe-ecC-CC-CCCCHHHHHHHHHH
Confidence 0 11111111111112356788888776 4442 333332 332 22 36899998877753
No 17
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.59 E-value=0.2 Score=61.80 Aligned_cols=66 Identities=24% Similarity=0.467 Sum_probs=52.6
Q ss_pred cccccccCCCcEEEeeCCCeEEEEEcCCCCHHHHH--------------------------HHHHHHHHHHHhcCCCCCc
Q 002004 270 ELSKSMLENNKCYLLDRGSEVFVWVGRVTQVEERK--------------------------AASQAAEEFISSQNRPKSI 323 (983)
Q Consensus 270 ~l~q~~L~~~~vyILD~g~eIyVWiGk~as~~eRk--------------------------~A~~~A~~y~~~~~rp~~t 323 (983)
.++.+-|.+.+|||||.|..||+|+|..++..-.. ..++.+..+++. -|+...
T Consensus 882 raS~e~l~negiYll~nG~~~ylwvg~sv~~~llQ~lf~V~s~~~i~s~~~~Lpe~dn~lS~k~r~~i~~i~~-~r~~~l 960 (1007)
T KOG1984|consen 882 RASSEFLSNEGIYLLDNGQKIYLWVGESVDPDLLQDLFSVSSFEQIDSQSGVLPELDNPLSRKVRNVISLIRR-QRSSEL 960 (1007)
T ss_pred ecchhhccCCceEEEecCcEEEEEecCCCCHHHHHHHhcCccccccccccccccccCcHHHHHHHHHHHHHHh-cccccc
Confidence 48889999999999999999999999998654332 334555566666 667778
Q ss_pred eEEEecCCCCChh
Q 002004 324 RITRVIQGYETYA 336 (983)
Q Consensus 324 ~i~~V~eG~Ep~~ 336 (983)
++..+.+|.++.+
T Consensus 961 ~v~~~k~g~~~~~ 973 (1007)
T KOG1984|consen 961 PVVLVKQGLDGSE 973 (1007)
T ss_pred ccEEEecCCCchh
Confidence 9999999998876
No 18
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.71 E-value=0.17 Score=62.29 Aligned_cols=115 Identities=17% Similarity=0.280 Sum_probs=70.7
Q ss_pred CCCcEEEEEecC---Cce------eEeeecccCccCCCCCCEEEEeCCCEEEEEEcCCCCHH------------------
Q 002004 621 RDPHLFTFSFNK---GAF------QVEEVYNFSQDDLLTEDILILDTHAEVFVWVGQSVDSK------------------ 673 (983)
Q Consensus 621 ~~prLF~~s~~~---G~~------~v~EI~~F~QdDL~~~dv~ILD~~~eIfVWiG~~a~~~------------------ 673 (983)
..|.||.+..-. |.. .+-..-+.+-+-|....+||+|||.++|||+|+.|++.
T Consensus 734 IYP~Lysl~~l~~ea~~~~~d~~~~~p~~L~ltae~l~~~GlyL~D~g~~lfl~vg~~a~P~ll~~vfg~~~~adi~~~~ 813 (887)
T KOG1985|consen 734 IYPTLYSLHDLDDEAGLPIHDQTVVLPPPLNLTAELLSRRGLYLMDTGTTLFLWVGSNADPSLLFDVFGVSTLADIPIGK 813 (887)
T ss_pred hcccceeccccccccCcccccccccCCCccchHHHHhccCceEEEecCcEEEEEEcCCCCccccccccCcchHhhccccc
Confidence 568899876422 222 22233478888899999999999999999999998742
Q ss_pred ----HHH-HHHHHHHHHHhhhcccCCCCCCCcE-EEecCCCCCccccccee--cCCCcccccCchHHHHHHHHhc
Q 002004 674 ----EKQ-SAFEFGQNYIDMATSLEGLSPKVPL-YKVTEGNEPCFCTTFFS--WDPTKATVQGNSFQKKVALLFG 740 (983)
Q Consensus 674 ----ek~-~Al~~A~~Yl~~~~~~~~r~~~~pI-~~V~qG~EP~~Ft~~F~--Wd~~k~~~~~~s~~~~~~~~~~ 740 (983)
++. .-.+-...+|+... +++ .-.|. ++|+++ |-..-+.+|. .=..+.. .--||-+.|..|+.
T Consensus 814 ~~lp~~~n~~s~r~~~fI~~lR--~d~-~~~p~~~ivr~~-~~s~~k~~f~~~lvEDrs~-~~~SY~efLq~lk~ 883 (887)
T KOG1985|consen 814 YTLPELDNEESDRVRRFIKKLR--DDR-TYFPNLYIVRGD-DNSPLKAWFFSRLVEDRSE-NSPSYYEFLQHLKA 883 (887)
T ss_pred ccCcccccchhHHHHHHHHHhh--cCC-cccceEEEEecC-CCchHHHHHHHHHHhhhhc-CcHHHHHHHHHHHH
Confidence 111 11234455665532 133 23444 555555 5556666663 3333333 26799998888763
No 19
>COG5028 Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]
Probab=92.59 E-value=0.18 Score=61.56 Aligned_cols=66 Identities=23% Similarity=0.397 Sum_probs=48.9
Q ss_pred cccccccCCCcEEEeeCCCeEEEEEcCCCCHHHHHHHHHH-----------------------HHHHH---HhcCCCCCc
Q 002004 270 ELSKSMLENNKCYLLDRGSEVFVWVGRVTQVEERKAASQA-----------------------AEEFI---SSQNRPKSI 323 (983)
Q Consensus 270 ~l~q~~L~~~~vyILD~g~eIyVWiGk~as~~eRk~A~~~-----------------------A~~y~---~~~~rp~~t 323 (983)
.++.+.|++.++|+||+|.+||+|+|+++.+......+.. +...| +...+-...
T Consensus 737 NaT~s~le~~GlYLidtg~~iflw~g~d~~p~Ll~dlf~~~~~~~I~~~k~~~p~~~n~~n~~v~~iI~~lrs~~~~~tl 816 (861)
T COG5028 737 NATSSLLESGGLYLIDTGQKIFLWFGKDAVPSLLQDLFGVDSLSDIPSGKFTLPPTGNEFNERVRNIIGELRSVNDDSTL 816 (861)
T ss_pred hhhHHHHhcCCeEEEEcCCEEEEEecCCCCHHHHHHhcCcchhhhccccccccCCcCCHHHHHHHHHHHHHHhhCCCCcc
Confidence 3889999999999999999999999999987655544332 22222 233344445
Q ss_pred eEEEecCCCCCh
Q 002004 324 RITRVIQGYETY 335 (983)
Q Consensus 324 ~i~~V~eG~Ep~ 335 (983)
++..|.+|.+|.
T Consensus 817 ~lvlVR~~~d~s 828 (861)
T COG5028 817 PLVLVRGGGDPS 828 (861)
T ss_pred ceEEEecCCCcc
Confidence 788999999988
No 20
>PTZ00395 Sec24-related protein; Provisional
Probab=92.21 E-value=0.33 Score=62.77 Aligned_cols=33 Identities=21% Similarity=0.329 Sum_probs=29.7
Q ss_pred ccccccCCCcEEEeeCCCeEEEEEcCCCCHHHH
Q 002004 271 LSKSMLENNKCYLLDRGSEVFVWVGRVTQVEER 303 (983)
Q Consensus 271 l~q~~L~~~~vyILD~g~eIyVWiGk~as~~eR 303 (983)
++.+-|.+++|||||+|..||+|+|+.++++--
T Consensus 1436 LS~ErLesdGIYLLDNGe~IyLWVG~~V~PqLL 1468 (1560)
T PTZ00395 1436 SSAEKIYSNGIYLLDACTHFYLYFGFHSDANFA 1468 (1560)
T ss_pred chHHHhcCCcEEEEECCCEEEEEECCCCCHHHH
Confidence 788899999999999999999999999876543
No 21
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.99 E-value=1 Score=55.81 Aligned_cols=29 Identities=34% Similarity=0.819 Sum_probs=27.0
Q ss_pred ccccccCCCcEEEeeCCCeEEEEEcCCCC
Q 002004 271 LSKSMLENNKCYLLDRGSEVFVWVGRVTQ 299 (983)
Q Consensus 271 l~q~~L~~~~vyILD~g~eIyVWiGk~as 299 (983)
++-+.|+....||+|||.++|+|+|+++.
T Consensus 765 ltae~l~~~GlyL~D~g~~lfl~vg~~a~ 793 (887)
T KOG1985|consen 765 LTAELLSRRGLYLMDTGTTLFLWVGSNAD 793 (887)
T ss_pred hHHHHhccCceEEEecCcEEEEEEcCCCC
Confidence 77889999999999999999999999974
No 22
>PLN00162 transport protein sec23; Provisional
Probab=78.08 E-value=5.7 Score=50.58 Aligned_cols=45 Identities=27% Similarity=0.473 Sum_probs=34.6
Q ss_pred CCCcEEEEEecCCceeEeeecccCccCCCCCCEEEEeCCCEEEEEEcCC
Q 002004 621 RDPHLFTFSFNKGAFQVEEVYNFSQDDLLTEDILILDTHAEVFVWVGQS 669 (983)
Q Consensus 621 ~~prLF~~s~~~G~~~v~EI~~F~QdDL~~~dv~ILD~~~eIfVWiG~~ 669 (983)
..|+||..++.. ..+-...+.+-|.+|.|+|||++..|+||.|..
T Consensus 619 I~P~L~sy~~~~----~P~pv~Ld~~si~~d~ilLLD~~f~vvi~~G~~ 663 (761)
T PLN00162 619 IQPTLISYSFNG----PPEPVLLDVASIAADRILLLDSYFSVVIFHGST 663 (761)
T ss_pred hCCeEEEecCCC----CCcceecchhhccCCceEEEeCCCEEEEEecCc
Confidence 679999888642 112234666778899999999999999999953
No 23
>PLN00162 transport protein sec23; Provisional
Probab=69.29 E-value=15 Score=46.86 Aligned_cols=82 Identities=21% Similarity=0.191 Sum_probs=51.4
Q ss_pred CCCeEEEEe-CCceEEEEccccccccCCCcEEEeeCCCeEEEEEcCCC----------C--HHHHHH----HHHHHHHHH
Q 002004 252 TPPKLYSIE-DSQVKIVEGELSKSMLENNKCYLLDRGSEVFVWVGRVT----------Q--VEERKA----ASQAAEEFI 314 (983)
Q Consensus 252 ~~~rLy~v~-~G~l~~~e~~l~q~~L~~~~vyILD~g~eIyVWiGk~a----------s--~~eRk~----A~~~A~~y~ 314 (983)
..|+||.+. ++... -+.|+-+-|.+|.+||||+|..|+||.|... . .+..+. ...-|++++
T Consensus 619 I~P~L~sy~~~~~P~--pv~Ld~~si~~d~ilLLD~~f~vvi~~G~~ia~w~~~~~~~~~~~~~~~~~l~~p~~~a~~~~ 696 (761)
T PLN00162 619 IQPTLISYSFNGPPE--PVLLDVASIAADRILLLDSYFSVVIFHGSTIAQWRKAGYHNQPEHEAFAQLLEAPQADAQAII 696 (761)
T ss_pred hCCeEEEecCCCCCc--ceecchhhccCCceEEEeCCCEEEEEecCcccchhhcCCCCCcchhhHHHHHHhHHHHHHHHH
Confidence 357888776 44322 1237777889999999999999999999632 1 111233 334455544
Q ss_pred HhcCCCCCceEEEecCCCCChhh
Q 002004 315 SSQNRPKSIRITRVIQGYETYAF 337 (983)
Q Consensus 315 ~~~~rp~~t~i~~V~eG~Ep~~F 337 (983)
+ .|...+.+....||.--+-|
T Consensus 697 ~--~Rfp~Pr~i~~~~~~SqaRf 717 (761)
T PLN00162 697 K--ERFPVPRLVVCDQHGSQARF 717 (761)
T ss_pred h--cCCCCCeEEEeCCCCcHHHH
Confidence 3 46443667777777655544
No 24
>PF00241 Cofilin_ADF: Cofilin/tropomyosin-type actin-binding protein; InterPro: IPR002108 The actin-depolymerising factor homology (ADF-H) domain is an ~150-amino acid motif that is present in three phylogenetically distinct classes of eukaryotic actin-binding proteins [, , ]: ADF/cofilins, which include ADF, cofilin, destrin, actophorin, coactosin, depactin and glia maturation factors (GMFs) beta and gamma. ADF/cofilins are small actin-binding proteins composed of a single ADF-H domain. They bind both actin-monomers and filaments and promote rapid filament turnover in cells by depolymerising/fragmenting actin filaments. ADF/cofilins bind ADP-actin with higher affinity than ATP-actin and inhibit the spontaneous nucleotide exchange on actin monomers Twinfilins, which are actin monomer-binding proteins that are composed of two ADF-H domains Abp1/Drebrins, which are relatively large proteins composed of an N-terminal ADF-H domain followed by a variable region and a C-terminal SH3 domain. Abp1/Drebrins interact only with actin filaments and do not promote filament depolymerisation or fragmentation Although these proteins are biochemically distinct and play different roles in actin dynamics, they all appear to use the ADF-H domain for their interactions with actin. The ADF-H domain consists of a six-stranded mixed beta-sheet in which the four central strands (beta2-beta5) are anti-parallel and the two edge strands (beta1 and beta6) run parallel with the neighbouring strands. The sheet is surrounded by two alpha-helices on each side [, , ].; GO: 0003779 actin binding, 0005622 intracellular; PDB: 1AK6_A 1AK7_A 1V6F_A 2L72_A 1CFY_A 1QPV_A 1COF_A 1TVJ_A 1X67_A 3L50_A ....
Probab=58.63 E-value=35 Score=32.99 Aligned_cols=55 Identities=13% Similarity=0.358 Sum_probs=38.3
Q ss_pred ceeeeCcEEEEEEeee---cCCCCceeEEEEEccCCCChHHHHHHHHHHHHHHHHcCC
Q 002004 413 GKFYSGDCYIVLYTYH---SGDRKEDYFLCCWFGKDSIEEDQKMATRLANTMCNSLKG 467 (983)
Q Consensus 413 G~FysgDcYIVlytY~---~~~~k~~~~iy~W~G~~ss~de~~~aa~~a~eL~~~l~g 467 (983)
.+|-..+|.-++|.|. .+..+...++.+|.+..++..++..-|..-..|.+.+++
T Consensus 47 ~~l~~~~p~y~~~~~~~~~~~~~~~k~vfI~w~P~~~~vk~km~yas~k~~l~~~l~~ 104 (127)
T PF00241_consen 47 SHLPDDEPRYILYRFEYTHKGSRRSKLVFIYWCPDNAPVKEKMLYASSKASLKKKLGG 104 (127)
T ss_dssp HCSCTTSEEEEEEEEEEEETTSEEEEEEEEEEESTTS-HHHHHHHHHHHHHHHHHCTT
T ss_pred HhcccCCcEEEEEEeeecccCCCCceEEEEEEecCCccHHHhhhhHHhHHHHHHHhCC
Confidence 3445667555566553 344556778889999999999998777666677778877
No 25
>KOG3655 consensus Drebrins and related actin binding proteins [Cytoskeleton]
Probab=53.96 E-value=27 Score=41.40 Aligned_cols=61 Identities=15% Similarity=0.134 Sum_probs=49.9
Q ss_pred cCCCCceeEEEEEccCCCChHHHHHHHHHHHHHHHHcCCCCe--EEEeecCCCCHHHHhhcCC
Q 002004 429 SGDRKEDYFLCCWFGKDSIEEDQKMATRLANTMCNSLKGRPV--QGRIFQGREPPQFVALFQP 489 (983)
Q Consensus 429 ~~~~k~~~~iy~W~G~~ss~de~~~aa~~a~eL~~~l~g~~v--q~Rv~qGkEp~~Fl~iF~~ 489 (983)
..++...++|-.|+|..+..--++.|+.++..+.+.|+|-.| ++|...-=++..|+.-...
T Consensus 73 ~~s~l~KfvLI~W~GE~vp~~Rka~~ath~a~v~~~lkg~hV~i~Ar~e~Dld~d~i~~~ls~ 135 (484)
T KOG3655|consen 73 PMSGLPKFVLINWIGEGVPVLRKAKCATHKALVKNFLKGFHVEINARSEEDLDEDAIREKLSK 135 (484)
T ss_pred cccCCcceEEEEecCCccHHHhhhhhcchHHHHHHHhhcceEEEeccchhhcCHHHHHHHHHh
Confidence 456778999999999999988889999998888899998776 4677777777777776654
No 26
>smart00102 ADF Actin depolymerisation factor/cofilin -like domains. Severs actin filaments and binds to actin monomers.
Probab=45.64 E-value=60 Score=31.55 Aligned_cols=56 Identities=16% Similarity=0.353 Sum_probs=38.6
Q ss_pred ceeeeCcEEEEEEeee-c--CCCCceeEEEEEccCCCChHHHHHHHHHHHHHHHHcCCC
Q 002004 413 GKFYSGDCYIVLYTYH-S--GDRKEDYFLCCWFGKDSIEEDQKMATRLANTMCNSLKGR 468 (983)
Q Consensus 413 G~FysgDcYIVlytY~-~--~~~k~~~~iy~W~G~~ss~de~~~aa~~a~eL~~~l~g~ 468 (983)
..|-..+|--++|.|. . +..+...++.+|.+..++..++...|.....+.+.++|-
T Consensus 47 ~~l~~~~~ry~~~~~~~~~~~~~~~k~vfI~w~P~~a~~~~km~yas~k~~l~~~l~~~ 105 (127)
T smart00102 47 EELPEDECRYALYDYKFTTEESKKSKIVFIFWSPDGAPVKSKMLYASSKDTLKKELGGI 105 (127)
T ss_pred HhCCccCceEEEEEeecccCCCccccEEEEEECCCCCCHHHHHHHHHHHHHHHHHcCCc
Confidence 3445566644455663 1 234567889999999999999987777666777777763
No 27
>KOG3655 consensus Drebrins and related actin binding proteins [Cytoskeleton]
Probab=41.94 E-value=44 Score=39.64 Aligned_cols=109 Identities=14% Similarity=0.203 Sum_probs=77.1
Q ss_pred cCChhhhcCCccccEEEEEEECc----eeeeCCCCCcCee---eeCc-----EEEEEEeecCCCCCceEEEEEEecCCCC
Q 002004 7 SLDPAFQGAGQRVGTEIWRIENF----QPVPLPKSEHGKF---YMGD-----CYIVLQTTPGKGGAYLYDIHFWIGKDTS 74 (983)
Q Consensus 7 ~~d~~f~~~g~~~gl~IWrIe~~----~~v~vp~~~~G~F---ysgd-----~YIVL~t~~~~~~~~~~~Ih~W~G~~ss 74 (983)
.++.+|..+-....-..|-|-.+ ..+.+....+|.| .... .|+.+.+....++.-.++|-.|+|.+++
T Consensus 12 ei~aaY~~v~~d~~dt~WaiF~Yeg~s~~~~~~~s~~~~~~e~~~df~~~kv~yg~~rv~D~~s~l~KfvLI~W~GE~vp 91 (484)
T KOG3655|consen 12 EIRAAYERVVDDSSDTDWALFTYEGNSNDLKVAGSGEGGLEEFLGDFDSGKVMYGFCRVKDPMSGLPKFVLINWIGEGVP 91 (484)
T ss_pred HHHHHHHHhhccCCCceeEEEeecCCccceeeeccccccHHHHhhhcccCceeEEEEEecCcccCCcceEEEEecCCccH
Confidence 36677877777666788998655 3444555566553 2221 4777666555556667999999999999
Q ss_pred hhhHhhHHHHHHHHHHHhCCCceEE--EeeccCCCHHHHhhcC
Q 002004 75 QDEAGTAAIKTVELDAVLGGRAVQH--RELQGHESDKFLSYFK 115 (983)
Q Consensus 75 ~de~g~AA~~tveLd~~lgg~~vq~--Re~QG~Es~~Fls~Fk 115 (983)
.-.++.+|.+...+.+.|.|-.|++ |...--+...|+.-..
T Consensus 92 ~~Rka~~ath~a~v~~~lkg~hV~i~Ar~e~Dld~d~i~~~ls 134 (484)
T KOG3655|consen 92 VLRKAKCATHKALVKNFLKGFHVEINARSEEDLDEDAIREKLS 134 (484)
T ss_pred HHhhhhhcchHHHHHHHhhcceEEEeccchhhcCHHHHHHHHH
Confidence 9999999999999999999987763 4444455666665554
No 28
>smart00102 ADF Actin depolymerisation factor/cofilin -like domains. Severs actin filaments and binds to actin monomers.
Probab=37.47 E-value=1.4e+02 Score=29.07 Aligned_cols=76 Identities=13% Similarity=0.109 Sum_probs=48.6
Q ss_pred ccEEEEEEECce-eeeCCCC-C----c----Ceeee-CcEEEEEEeecC--CCCCceEEEEEEecCCCChhhHhhHHHHH
Q 002004 19 VGTEIWRIENFQ-PVPLPKS-E----H----GKFYM-GDCYIVLQTTPG--KGGAYLYDIHFWIGKDTSQDEAGTAAIKT 85 (983)
Q Consensus 19 ~gl~IWrIe~~~-~v~vp~~-~----~----G~Fys-gd~YIVL~t~~~--~~~~~~~~Ih~W~G~~ss~de~g~AA~~t 85 (983)
...-||+|.... .+-|... . + ..|-+ .-+|+|+..-.. .+..-...+.+|++..++.-++..-|..-
T Consensus 16 ~~~vi~~i~~~~~~i~v~~~~~~~~~~~el~~~l~~~~~ry~~~~~~~~~~~~~~~k~vfI~w~P~~a~~~~km~yas~k 95 (127)
T smart00102 16 HSAIIFKIDKDNEEIVVEEVGSTEDSYDEFVEELPEDECRYALYDYKFTTEESKKSKIVFIFWSPDGAPVKSKMLYASSK 95 (127)
T ss_pred ceEEEEEEecCCCEEEEEecCCCCCCHHHHHHhCCccCceEEEEEeecccCCCccccEEEEEECCCCCCHHHHHHHHHHH
Confidence 568899998642 2222211 1 1 12333 346888864221 12233467788999999999998888877
Q ss_pred HHHHHHhCC
Q 002004 86 VELDAVLGG 94 (983)
Q Consensus 86 veLd~~lgg 94 (983)
..|-..|+|
T Consensus 96 ~~l~~~l~~ 104 (127)
T smart00102 96 DTLKKELGG 104 (127)
T ss_pred HHHHHHcCC
Confidence 888888987
No 29
>cd00013 ADF Actin depolymerisation factor/cofilin -like domains; present in a family of essential eukaryotic actin regulatory proteins; these proteins enhance the turnover rate of actin and interact with actin monomers as well as actin filaments.
Probab=35.74 E-value=1.5e+02 Score=28.72 Aligned_cols=55 Identities=16% Similarity=0.353 Sum_probs=36.3
Q ss_pred eeeeCcEEEEEEeeec---CCCCceeEEEEEccCCCChHHHHHHHHHHHHHHHHcCCC
Q 002004 414 KFYSGDCYIVLYTYHS---GDRKEDYFLCCWFGKDSIEEDQKMATRLANTMCNSLKGR 468 (983)
Q Consensus 414 ~FysgDcYIVlytY~~---~~~k~~~~iy~W~G~~ss~de~~~aa~~a~eL~~~l~g~ 468 (983)
+|-..+|.-++|.|.. +..+...++.+|.+..++..++..-+..-..+.+.++|-
T Consensus 54 ~l~~~~~~y~~~~~~~~~~~~~~~k~vfI~w~P~~a~~k~km~yas~k~~l~~~l~~~ 111 (132)
T cd00013 54 ELPEDECRYALYDYDFTTEGSKKSKIVFIYWSPETAPVKSKMLYASSKAALKRELVGI 111 (132)
T ss_pred hCCcCCceEEEEEecccCCCccccCEEEEEECCCCCChhhhhhhHHHHHHHHHhcCCc
Confidence 4445566444556631 134567899999999999999876665555566666654
No 30
>PF00241 Cofilin_ADF: Cofilin/tropomyosin-type actin-binding protein; InterPro: IPR002108 The actin-depolymerising factor homology (ADF-H) domain is an ~150-amino acid motif that is present in three phylogenetically distinct classes of eukaryotic actin-binding proteins [, , ]: ADF/cofilins, which include ADF, cofilin, destrin, actophorin, coactosin, depactin and glia maturation factors (GMFs) beta and gamma. ADF/cofilins are small actin-binding proteins composed of a single ADF-H domain. They bind both actin-monomers and filaments and promote rapid filament turnover in cells by depolymerising/fragmenting actin filaments. ADF/cofilins bind ADP-actin with higher affinity than ATP-actin and inhibit the spontaneous nucleotide exchange on actin monomers Twinfilins, which are actin monomer-binding proteins that are composed of two ADF-H domains Abp1/Drebrins, which are relatively large proteins composed of an N-terminal ADF-H domain followed by a variable region and a C-terminal SH3 domain. Abp1/Drebrins interact only with actin filaments and do not promote filament depolymerisation or fragmentation Although these proteins are biochemically distinct and play different roles in actin dynamics, they all appear to use the ADF-H domain for their interactions with actin. The ADF-H domain consists of a six-stranded mixed beta-sheet in which the four central strands (beta2-beta5) are anti-parallel and the two edge strands (beta1 and beta6) run parallel with the neighbouring strands. The sheet is surrounded by two alpha-helices on each side [, , ].; GO: 0003779 actin binding, 0005622 intracellular; PDB: 1AK6_A 1AK7_A 1V6F_A 2L72_A 1CFY_A 1QPV_A 1COF_A 1TVJ_A 1X67_A 3L50_A ....
Probab=33.64 E-value=1.5e+02 Score=28.56 Aligned_cols=87 Identities=23% Similarity=0.316 Sum_probs=53.2
Q ss_pred ccEEEEEEECc-eeeeCCCCC--cCe-------ee-eCcEEEEEEee-cCCCCC-ceEEEEEEecCCCChhhHhhHHHHH
Q 002004 19 VGTEIWRIENF-QPVPLPKSE--HGK-------FY-MGDCYIVLQTT-PGKGGA-YLYDIHFWIGKDTSQDEAGTAAIKT 85 (983)
Q Consensus 19 ~gl~IWrIe~~-~~v~vp~~~--~G~-------Fy-sgd~YIVL~t~-~~~~~~-~~~~Ih~W~G~~ss~de~g~AA~~t 85 (983)
...-+|+|++. ..+.|.+.. .+. |= +.-||+|+... ..+++. ....+.+|++..++.-++..-|..-
T Consensus 16 ~~~i~~~i~~~~~~i~v~~~g~~~~~~~el~~~l~~~~p~y~~~~~~~~~~~~~~~k~vfI~w~P~~~~vk~km~yas~k 95 (127)
T PF00241_consen 16 TRWIIFKIDDEKEEIVVEKSGSEGGSFDELLSHLPDDEPRYILYRFEYTHKGSRRSKLVFIYWCPDNAPVKEKMLYASSK 95 (127)
T ss_dssp CSEEEEEEETTSTEEEEEEEEEESSHHHHHHHCSCTTSEEEEEEEEEEEETTSEEEEEEEEEEESTTS-HHHHHHHHHHH
T ss_pred ceEEEEEEeCCCcEEEEEeccCCCCCHHHHHHhcccCCcEEEEEEeeecccCCCCceEEEEEEecCCccHHHhhhhHHhH
Confidence 55788999887 333333221 111 33 24478887532 222322 3455668999999999988777777
Q ss_pred HHHHHHhCCCceEEEeeccCCCH
Q 002004 86 VELDAVLGGRAVQHRELQGHESD 108 (983)
Q Consensus 86 veLd~~lgg~~vq~Re~QG~Es~ 108 (983)
..|-..|++ -+.++|.++..
T Consensus 96 ~~l~~~l~~---~~~~~~~~d~~ 115 (127)
T PF00241_consen 96 ASLKKKLGG---IHIEIQASDPD 115 (127)
T ss_dssp HHHHHHCTT---EEEEEEESSGG
T ss_pred HHHHHHhCC---ceEEEEECChH
Confidence 788888987 34466666544
No 31
>PLN03216 actin depolymerizing factor; Provisional
Probab=27.29 E-value=4.7e+02 Score=26.19 Aligned_cols=107 Identities=17% Similarity=0.109 Sum_probs=0.0
Q ss_pred CCCccccCChhhh------cCCccccEEEEEEECc--eeeeCCCCCcCeeeeC---------cEEEEE---EeecCCCCC
Q 002004 1 MSTSAKSLDPAFQ------GAGQRVGTEIWRIENF--QPVPLPKSEHGKFYMG---------DCYIVL---QTTPGKGGA 60 (983)
Q Consensus 1 ~~~~~~~~d~~f~------~~g~~~gl~IWrIe~~--~~v~vp~~~~G~Fysg---------d~YIVL---~t~~~~~~~ 60 (983)
||.|...+++... ..++.-..-|.+|.+. +.+......-|..|+. .+|+|+ ++......+
T Consensus 5 m~~SGi~v~~~c~~~f~~lk~~k~~r~iifkI~~~~~~ivv~~~~~~~~~~~d~~~~L~~~~~rY~vyd~~~~~~~g~~~ 84 (141)
T PLN03216 5 MATTGMWVTDECKNSFMEMKWKKVHRYIVFKIDEKSRKVTVDKVGGPGESYDDLAASLPTDDCRYAVFDFDFVTVDNCRK 84 (141)
T ss_pred ecCCCCeeCHHHHHHHHHHHhCCCceEEEEEEcCCCCEEEEEecCCCCCCHHHHHHhCCCCCCeEEEEEeEeccCCCCcc
Q ss_pred ceEEEEEEecCCCChhhHhhHHHHHHHHHHHhCCCceEEEeeccCCCHHH
Q 002004 61 YLYDIHFWIGKDTSQDEAGTAAIKTVELDAVLGGRAVQHRELQGHESDKF 110 (983)
Q Consensus 61 ~~~~Ih~W~G~~ss~de~g~AA~~tveLd~~lgg~~vq~Re~QG~Es~~F 110 (983)
......||...+++.-++=.-|.--.-|-..|+|- ..++|.++...+
T Consensus 85 ~klvFI~w~Pd~a~vk~KMlYAssK~~lk~~l~gi---~~~iqatd~~el 131 (141)
T PLN03216 85 SKIFFIAWSPEASRIRAKMLYATSKDGLRRVLDGV---HYELQATDPTEM 131 (141)
T ss_pred cCEEEEEECCCCCCHHHHHHHHHHHHHHHHHhcCC---eEEEEECChHhc
No 32
>cd00013 ADF Actin depolymerisation factor/cofilin -like domains; present in a family of essential eukaryotic actin regulatory proteins; these proteins enhance the turnover rate of actin and interact with actin monomers as well as actin filaments.
Probab=27.20 E-value=2.1e+02 Score=27.62 Aligned_cols=60 Identities=13% Similarity=0.087 Sum_probs=39.2
Q ss_pred CcEEEEEEeecCC--CCCceEEEEEEecCCCChhhHhhHHHHHHHHHHHhCCCceEEEeeccCCC
Q 002004 45 GDCYIVLQTTPGK--GGAYLYDIHFWIGKDTSQDEAGTAAIKTVELDAVLGGRAVQHRELQGHES 107 (983)
Q Consensus 45 gd~YIVL~t~~~~--~~~~~~~Ih~W~G~~ss~de~g~AA~~tveLd~~lgg~~vq~Re~QG~Es 107 (983)
..||+++...... +......+.+|++..++.-++..-|..-..|-..|+|- +.+++..+.
T Consensus 59 ~~~y~~~~~~~~~~~~~~~k~vfI~w~P~~a~~k~km~yas~k~~l~~~l~~~---~~~i~a~~~ 120 (132)
T cd00013 59 ECRYALYDYDFTTEGSKKSKIVFIYWSPETAPVKSKMLYASSKAALKRELVGI---QVEVQATDP 120 (132)
T ss_pred CceEEEEEecccCCCccccCEEEEEECCCCCChhhhhhhHHHHHHHHHhcCCc---eEEEEECCh
Confidence 3568887642211 23345788899999999988887766666777777764 333444443
No 33
>PF11330 DUF3132: Protein of unknown function (DUF3132); InterPro: IPR021479 This entry is represented by the Citrus psorosis virus, 54kDa protein; it is a family of uncharacterised viral proteins.
Probab=21.67 E-value=72 Score=29.33 Aligned_cols=36 Identities=22% Similarity=0.402 Sum_probs=29.3
Q ss_pred CCEEEEeCCCEEEEEEcCCCCHHHHHHHHHHHHHHH
Q 002004 651 EDILILDTHAEVFVWVGQSVDSKEKQSAFEFGQNYI 686 (983)
Q Consensus 651 ~dv~ILD~~~eIfVWiG~~a~~~ek~~Al~~A~~Yl 686 (983)
+-|||||..++=-.||-..+-.......-+.|.+|+
T Consensus 88 evvmildsrdegrmwikddvwaevtehgsksareyc 123 (124)
T PF11330_consen 88 EVVMILDSRDEGRMWIKDDVWAEVTEHGSKSAREYC 123 (124)
T ss_pred cEEEEEeccccCceeeechhHHHHHhhcchhhHhhc
Confidence 359999999999999998877766666777777775
Done!