Query 002007
Match_columns 983
No_of_seqs 159 out of 260
Neff 4.1
Searched_HMMs 46136
Date Thu Mar 28 14:24:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002007.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002007hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00422 glideosome-associated 99.9 4.8E-26 1E-30 254.5 18.5 228 377-649 22-289 (394)
2 cd07378 MPP_ACP5 Homo sapiens 99.9 3.7E-25 8E-30 232.7 16.9 216 382-644 1-238 (277)
3 cd00839 MPP_PAPs purple acid p 99.9 1.9E-24 4E-29 228.8 17.9 222 379-643 2-243 (294)
4 PLN02533 probable purple acid 99.9 1.3E-23 2.8E-28 237.9 18.7 210 377-640 135-361 (427)
5 KOG1378 Purple acid phosphatas 99.8 1.8E-20 3.9E-25 211.3 18.2 216 378-645 144-388 (452)
6 KOG2679 Purple (tartrate-resis 99.8 3.5E-20 7.5E-25 197.1 12.0 224 377-649 39-285 (336)
7 cd07395 MPP_CSTP1 Homo sapiens 99.7 1.7E-16 3.7E-21 166.8 18.2 177 421-640 48-237 (262)
8 cd07402 MPP_GpdQ Enterobacter 99.7 5E-16 1.1E-20 159.7 15.9 169 421-641 39-214 (240)
9 cd07396 MPP_Nbla03831 Homo sap 99.7 9.5E-16 2.1E-20 162.9 17.7 137 486-640 75-247 (267)
10 PRK11148 cyclic 3',5'-adenosin 99.6 2.7E-14 5.9E-19 152.3 17.9 199 378-639 11-225 (275)
11 cd07401 MPP_TMEM62_N Homo sapi 99.6 1.1E-14 2.5E-19 154.5 14.4 130 486-624 78-220 (256)
12 cd07399 MPP_YvnB Bacillus subt 99.5 1E-13 2.2E-18 143.6 14.1 126 422-619 35-166 (214)
13 PF00149 Metallophos: Calcineu 99.5 3.2E-14 7E-19 129.1 6.4 193 382-614 1-200 (200)
14 cd00842 MPP_ASMase acid sphing 99.5 1.9E-13 4.1E-18 146.5 12.8 166 421-615 67-262 (296)
15 cd07393 MPP_DR1119 Deinococcus 99.4 3.1E-12 6.6E-17 134.0 16.1 134 484-636 72-225 (232)
16 COG1409 Icc Predicted phosphoh 99.3 4.4E-11 9.6E-16 124.4 15.7 178 383-614 2-193 (301)
17 cd08163 MPP_Cdc1 Saccharomyces 99.3 5.1E-11 1.1E-15 127.7 15.1 118 485-620 85-234 (257)
18 cd07383 MPP_Dcr2 Saccharomyces 99.2 5.2E-11 1.1E-15 121.2 11.7 77 542-618 88-180 (199)
19 cd07392 MPP_PAE1087 Pyrobaculu 99.2 1.5E-10 3.2E-15 114.1 13.8 110 486-614 54-173 (188)
20 PRK11340 phosphodiesterase Yae 99.2 8.7E-10 1.9E-14 118.4 17.5 164 379-615 47-215 (271)
21 cd07385 MPP_YkuE_C Bacillus su 99.1 1.5E-09 3.2E-14 110.9 14.7 197 381-648 1-214 (223)
22 TIGR03767 P_acnes_RR metalloph 99.1 5E-09 1.1E-13 120.9 20.0 126 522-650 291-430 (496)
23 TIGR03729 acc_ester putative p 99.0 1.4E-09 2.9E-14 114.1 11.8 62 548-614 149-221 (239)
24 cd07388 MPP_Tt1561 Thermus the 99.0 1.4E-08 3E-13 107.6 17.1 174 382-613 5-190 (224)
25 cd07400 MPP_YydB Bacillus subt 98.8 1.5E-08 3.2E-13 97.3 8.9 49 569-618 81-129 (144)
26 cd07404 MPP_MS158 Microscilla 98.8 3E-08 6.4E-13 97.9 10.3 52 566-617 97-152 (166)
27 cd00840 MPP_Mre11_N Mre11 nucl 98.7 5.6E-08 1.2E-12 98.6 10.0 123 485-617 77-204 (223)
28 TIGR03768 RPA4764 metallophosp 98.7 3.1E-07 6.7E-12 105.8 15.9 88 524-612 294-409 (492)
29 cd00838 MPP_superfamily metall 98.6 1.3E-07 2.9E-12 85.5 9.4 50 569-619 70-120 (131)
30 COG1408 Predicted phosphohydro 98.5 4.7E-07 1E-11 99.1 11.6 208 377-649 40-273 (284)
31 cd07379 MPP_239FB Homo sapiens 98.4 1.3E-06 2.9E-11 84.0 8.9 47 565-614 67-116 (135)
32 cd07384 MPP_Cdc1_like Saccharo 98.0 1.6E-05 3.5E-10 80.8 8.8 35 569-621 119-153 (171)
33 PF09423 PhoD: PhoD-like phosp 98.0 7.1E-05 1.5E-09 86.1 14.5 91 521-614 252-377 (453)
34 cd08166 MPP_Cdc1_like_1 unchar 98.0 1.9E-05 4.1E-10 82.7 8.8 42 569-620 112-153 (195)
35 cd07397 MPP_DevT Myxococcus xa 97.8 0.00022 4.9E-09 76.8 13.2 58 561-618 142-212 (238)
36 cd08164 MPP_Ted1 Saccharomyces 97.6 0.0001 2.2E-09 77.2 6.9 32 569-618 129-160 (193)
37 cd08165 MPP_MPPE1 human MPPE1 97.6 0.00015 3.2E-09 72.7 7.6 34 569-620 107-140 (156)
38 cd00845 MPP_UshA_N_like Escher 97.6 0.0028 6E-08 66.9 16.5 116 487-616 72-208 (252)
39 COG2129 Predicted phosphoester 97.5 0.0026 5.6E-08 68.3 15.6 176 381-618 3-191 (226)
40 cd07406 MPP_CG11883_N Drosophi 97.5 0.0026 5.6E-08 68.4 15.8 132 487-642 73-228 (257)
41 cd07403 MPP_TTHA0053 Thermus t 97.5 0.00053 1.1E-08 66.6 9.3 49 567-618 57-107 (129)
42 PF12850 Metallophos_2: Calcin 97.5 0.00024 5.2E-09 68.2 6.6 60 565-639 80-139 (156)
43 PRK05340 UDP-2,3-diacylglucosa 97.4 0.00067 1.5E-08 71.9 9.9 18 600-617 185-202 (241)
44 cd00841 MPP_YfcE Escherichia c 97.4 0.00058 1.2E-08 66.7 8.6 42 565-615 74-115 (155)
45 COG1768 Predicted phosphohydro 97.4 0.0025 5.4E-08 66.6 12.9 48 564-619 157-204 (230)
46 TIGR01854 lipid_A_lpxH UDP-2,3 97.3 0.0032 6.9E-08 66.5 12.5 34 600-636 183-216 (231)
47 TIGR00040 yfcE phosphoesterase 97.2 0.0013 2.9E-08 64.9 8.4 14 600-613 104-117 (158)
48 KOG1432 Predicted DNA repair e 97.2 0.01 2.2E-07 67.0 16.1 206 377-613 49-310 (379)
49 PF14582 Metallophos_3: Metall 97.2 0.0022 4.8E-08 69.1 10.4 161 422-613 32-217 (255)
50 cd07410 MPP_CpdB_N Escherichia 97.2 0.0089 1.9E-07 64.6 15.2 122 488-615 86-231 (277)
51 cd07411 MPP_SoxB_N Thermus the 97.1 0.01 2.2E-07 63.9 14.7 112 489-614 87-219 (264)
52 cd00844 MPP_Dbr1_N Dbr1 RNA la 97.0 0.011 2.4E-07 64.6 13.9 51 565-618 164-233 (262)
53 cd07389 MPP_PhoD Bacillus subt 96.9 0.0057 1.2E-07 63.6 9.9 25 520-544 145-169 (228)
54 cd07398 MPP_YbbF-LpxH Escheric 96.8 0.0015 3.3E-08 66.7 4.9 30 600-636 187-216 (217)
55 TIGR00583 mre11 DNA repair pro 96.8 0.014 2.9E-07 67.6 12.9 41 566-615 201-241 (405)
56 PHA02546 47 endonuclease subun 96.8 0.012 2.6E-07 66.0 12.1 13 485-497 77-89 (340)
57 TIGR00619 sbcd exonuclease Sbc 96.7 0.0039 8.4E-08 67.2 7.3 17 486-502 77-93 (253)
58 COG0420 SbcD DNA repair exonuc 96.6 0.0055 1.2E-07 69.3 8.5 52 422-501 40-92 (390)
59 cd07409 MPP_CD73_N CD73 ecto-5 96.5 0.065 1.4E-06 58.6 15.2 117 484-615 82-219 (281)
60 KOG3770 Acid sphingomyelinase 96.4 0.022 4.8E-07 68.0 11.9 97 519-618 302-409 (577)
61 COG2908 Uncharacterized protei 96.4 0.011 2.4E-07 64.0 8.2 30 600-636 185-214 (237)
62 cd07408 MPP_SA0022_N Staphyloc 96.3 0.085 1.8E-06 56.7 14.8 122 484-616 70-215 (257)
63 PRK10966 exonuclease subunit S 96.1 0.0069 1.5E-07 69.9 5.4 22 486-507 76-97 (407)
64 cd07394 MPP_Vps29 Homo sapiens 95.9 0.038 8.3E-07 56.8 9.0 16 600-615 104-119 (178)
65 cd07382 MPP_DR1281 Deinococcus 95.6 0.5 1.1E-05 51.8 16.5 115 484-614 58-178 (255)
66 PRK09419 bifunctional 2',3'-cy 95.2 0.39 8.5E-06 62.4 16.6 189 380-615 659-883 (1163)
67 cd07425 MPP_Shelphs Shewanella 94.6 0.018 4E-07 60.5 2.2 49 421-496 31-79 (208)
68 cd07407 MPP_YHR202W_N Saccharo 94.6 0.8 1.7E-05 50.7 14.8 84 523-614 137-231 (282)
69 cd07405 MPP_UshA_N Escherichia 94.3 1.1 2.3E-05 49.5 14.9 50 564-615 173-222 (285)
70 cd07412 MPP_YhcR_N Bacillus su 94.2 1.7 3.8E-05 47.8 16.4 52 564-616 191-243 (288)
71 cd07390 MPP_AQ1575 Aquifex aeo 93.8 0.069 1.5E-06 53.9 4.2 35 565-617 106-140 (168)
72 cd07391 MPP_PF1019 Pyrococcus 93.1 0.077 1.7E-06 53.7 3.2 15 422-436 41-55 (172)
73 PRK04036 DNA polymerase II sma 93.0 0.091 2E-06 62.4 4.3 54 379-434 241-296 (504)
74 PRK09453 phosphodiesterase; Pr 92.5 0.15 3.3E-06 51.8 4.5 13 601-613 117-129 (182)
75 PRK09558 ushA bifunctional UDP 92.5 1.6 3.4E-05 52.4 13.5 50 564-615 209-258 (551)
76 cd07380 MPP_CWF19_N Schizosacc 91.9 0.53 1.1E-05 47.9 7.5 49 566-617 69-126 (150)
77 COG0737 UshA 5'-nucleotidase/2 91.7 5.8 0.00013 47.2 16.9 119 489-614 107-247 (517)
78 TIGR01530 nadN NAD pyrophospha 91.5 2.2 4.7E-05 51.5 13.2 112 487-615 84-219 (550)
79 cd07386 MPP_DNA_pol_II_small_a 91.3 0.2 4.3E-06 53.4 4.0 18 601-618 190-207 (243)
80 TIGR01390 CycNucDiestase 2',3' 88.8 6.5 0.00014 48.3 14.4 45 565-614 196-240 (626)
81 cd08162 MPP_PhoA_N Synechococc 88.6 4.7 0.0001 45.4 12.2 38 565-615 208-245 (313)
82 KOG3662 Cell division control 88.1 0.79 1.7E-05 53.5 5.8 89 377-497 44-144 (410)
83 COG3540 PhoD Phosphodiesterase 87.9 1.4 2.9E-05 52.4 7.5 47 379-439 137-185 (522)
84 cd07381 MPP_CapA CapA and rela 87.9 6.5 0.00014 41.8 12.1 131 484-619 77-224 (239)
85 smart00854 PGA_cap Bacterial c 87.4 12 0.00027 39.9 13.8 132 484-620 73-223 (239)
86 TIGR00282 metallophosphoestera 87.0 15 0.00033 40.9 14.6 49 553-613 132-180 (266)
87 COG4186 Predicted phosphoester 86.8 2.1 4.4E-05 44.7 7.2 43 563-613 105-147 (186)
88 COG0622 Predicted phosphoester 85.8 4 8.7E-05 42.5 8.9 43 563-613 78-120 (172)
89 cd07424 MPP_PrpA_PrpB PrpA and 84.4 1.3 2.8E-05 46.3 4.6 17 422-438 28-44 (207)
90 PHA02239 putative protein phos 84.3 1.1 2.3E-05 48.5 4.1 45 383-439 2-46 (235)
91 PRK09420 cpdB bifunctional 2', 83.4 13 0.00029 46.0 13.3 45 565-614 219-263 (649)
92 PRK09418 bifunctional 2',3'-cy 82.8 17 0.00036 46.2 13.9 46 565-615 245-290 (780)
93 cd00144 MPP_PPP_family phospho 81.0 1.9 4.1E-05 44.6 4.3 17 422-438 24-40 (225)
94 TIGR00024 SbcD_rel_arch putati 79.9 2 4.3E-05 46.2 4.1 16 422-437 58-73 (225)
95 PRK09419 bifunctional 2',3'-cy 75.0 31 0.00067 45.5 13.4 48 565-616 235-282 (1163)
96 COG1311 HYS2 Archaeal DNA poly 74.2 2.3 5E-05 50.6 2.8 93 378-496 222-320 (481)
97 COG1407 Predicted ICC-like pho 73.8 2.4 5.2E-05 46.4 2.7 47 422-496 63-109 (235)
98 PRK00166 apaH diadenosine tetr 71.1 5.2 0.00011 44.5 4.6 18 422-439 28-45 (275)
99 cd07413 MPP_PA3087 Pseudomonas 68.2 4.7 0.0001 43.0 3.4 17 422-438 33-49 (222)
100 PRK09968 serine/threonine-spec 66.3 3.9 8.5E-05 43.5 2.3 19 421-439 41-59 (218)
101 PF09587 PGA_cap: Bacterial ca 61.3 1.1E+02 0.0025 32.9 12.3 133 483-620 74-234 (250)
102 PF10230 DUF2305: Uncharacteri 58.5 24 0.00052 38.8 6.6 21 485-509 3-23 (266)
103 KOG2310 DNA repair exonuclease 57.3 79 0.0017 38.9 10.9 51 379-442 11-73 (646)
104 cd07422 MPP_ApaH Escherichia c 56.5 10 0.00022 41.9 3.4 19 421-439 25-43 (257)
105 KOG4419 5' nucleotidase [Nucle 53.7 56 0.0012 40.4 9.0 126 480-618 121-275 (602)
106 PRK11439 pphA serine/threonine 53.3 8.1 0.00018 40.9 2.0 44 383-439 18-61 (218)
107 cd07387 MPP_PolD2_C PolD2 (DNA 52.7 18 0.00039 40.1 4.6 56 383-438 1-58 (257)
108 PRK13625 bis(5'-nucleosyl)-tet 52.7 10 0.00022 41.0 2.6 51 384-439 3-53 (245)
109 cd07423 MPP_PrpE Bacillus subt 50.6 12 0.00026 40.0 2.7 18 422-439 37-54 (234)
110 cd07421 MPP_Rhilphs Rhilph pho 47.6 19 0.00041 41.1 3.7 21 422-442 34-54 (304)
111 PRK11907 bifunctional 2',3'-cy 46.6 95 0.0021 39.9 9.9 45 565-614 310-354 (814)
112 PF14362 DUF4407: Domain of un 37.7 41 0.00089 37.4 4.5 99 29-145 8-107 (301)
113 TIGR00668 apaH bis(5'-nucleosy 36.8 22 0.00048 40.0 2.2 19 421-439 27-45 (279)
114 cd03231 ABC_CcmA_heme_exporter 28.6 1.1E+02 0.0023 31.8 5.4 41 535-576 146-186 (201)
115 COG2843 PgsA Putative enzyme o 27.9 1.7E+02 0.0036 34.6 7.4 68 562-642 221-289 (372)
116 PF07819 PGAP1: PGAP1-like pro 26.1 2.1E+02 0.0046 30.8 7.3 80 483-574 3-93 (225)
117 TIGR02673 FtsE cell division A 25.3 1.1E+02 0.0024 31.7 4.9 41 535-576 158-198 (214)
118 cd03232 ABC_PDR_domain2 The pl 25.2 1.3E+02 0.0029 30.9 5.4 41 535-576 129-169 (192)
119 TIGR01189 ccmA heme ABC export 24.1 1.4E+02 0.0031 30.7 5.4 41 535-576 148-188 (198)
120 PRK13543 cytochrome c biogenes 22.7 1.4E+02 0.0031 31.1 5.2 44 535-579 158-201 (214)
121 TIGR01166 cbiO cobalt transpor 21.9 1.5E+02 0.0033 30.2 5.1 41 535-576 148-188 (190)
122 COG4133 CcmA ABC-type transpor 21.3 1.5E+02 0.0032 32.5 4.9 44 535-579 151-194 (209)
123 cd03262 ABC_HisP_GlnQ_permease 20.7 1.6E+02 0.0034 30.5 5.0 42 535-577 156-197 (213)
124 cd07390 MPP_AQ1575 Aquifex aeo 20.6 94 0.002 31.5 3.2 18 420-437 40-57 (168)
125 cd03269 ABC_putative_ATPase Th 20.5 1.5E+02 0.0032 30.7 4.7 41 535-576 149-189 (210)
126 TIGR01978 sufC FeS assembly AT 20.4 1.5E+02 0.0032 31.3 4.8 42 535-577 165-206 (243)
127 TIGR00960 3a0501s02 Type II (G 20.2 1.7E+02 0.0036 30.5 5.0 42 535-577 159-200 (216)
128 TIGR02106 cyd_oper_ybgT cyd op 20.2 58 0.0013 25.6 1.2 10 99-108 1-10 (30)
129 cd03226 ABC_cobalt_CbiO_domain 20.2 1.6E+02 0.0035 30.4 4.9 41 535-576 147-187 (205)
130 PF07717 OB_NTP_bind: Oligonuc 20.1 40 0.00086 31.8 0.4 32 250-281 80-111 (114)
131 cd03238 ABC_UvrA The excision 20.1 1.7E+02 0.0038 30.4 5.1 41 535-576 110-150 (176)
No 1
>PTZ00422 glideosome-associated protein 50; Provisional
Probab=99.94 E-value=4.8e-26 Score=254.50 Aligned_cols=228 Identities=16% Similarity=0.158 Sum_probs=169.1
Q ss_pred CCCCceEEEEEeccCCCCCCchHHHHHhcccccccccCCCccccCCccEEEEcccccCCCCChhhhhcccccchhhhcCC
Q 002007 377 SEKEDLWFDFMADTGDGGNSSYSVARLLAQPHIRVTRDDSVFTLPRGDVLLIGGDLAYPNPSAFTYERRLFRPFEYALQP 456 (983)
Q Consensus 377 ~~d~~lwFd~VaDtGDG~dStYaVA~LmAqp~L~v~~~~~~~~lPRgdfLVlgGDlvYP~gs~e~Y~~Rf~~Pye~Al~~ 456 (983)
..++.+.|..+||.|.|...|++||+.|++-..+ -+.||++..||+. ++|.....+.||.+.||..+.+
T Consensus 22 ~~~~~l~F~~vGDwG~g~~~Q~~VA~~M~~~~~~----------~~~~FVls~GDNF-~~Gv~sv~Dp~f~~~FE~vY~~ 90 (394)
T PTZ00422 22 SVKAQLRFASLGNWGTGSKQQKLVASYLKQYAKN----------ERVTFLVSPGSNF-PGGVDGLNDPKWKHCFENVYSE 90 (394)
T ss_pred ccCCeEEEEEEecCCCCchhHHHHHHHHHHHHHh----------CCCCEEEECCccc-cCCCCCccchhHHhhHhhhccC
Confidence 4578899999999999999999999999987533 2579999999997 7888888889999999987753
Q ss_pred CCCCcccccccCCCCCCCCCcccccCCCCcEEEeCCCCCCCCChhHHHHHhhc----------------cccCCccccCC
Q 002007 457 PPWYKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFDGLNTFMRFICH----------------KSWLGGWFMPQ 520 (983)
Q Consensus 457 ~~~~~~~~~~~~~pelp~~~~~l~~~~gP~ifAIPGNHDWyDGL~aF~r~F~~----------------r~~lgGW~mpQ 520 (983)
+ + ..+..| +|+++|||||..+.++++...-+ .....+|.||.
T Consensus 91 ~-------------s--------~~L~~P-wy~vLGNHDy~Gn~~AQi~r~~~~y~~~~~~~~~~y~~~~~~~~RW~mP~ 148 (394)
T PTZ00422 91 E-------------S--------GDMQIP-FFTVLGQADWDGNYNAELLKGQNVYLNGHGQTDIEYDSNNDIYPKWIMPN 148 (394)
T ss_pred c-------------c--------hhhCCC-eEEeCCcccccCCchhhhccccccccccccccccccccccccCCCccCCc
Confidence 1 1 012345 99999999999999998852211 01246799996
Q ss_pred CcceEEEEc----C------------CcEEEEEEecCCCC------CCCHHHHHHHHHHHHhhcCCCCeEEEEecCCCCc
Q 002007 521 KKSYFALQL----P------------KGWWVFGLDLALHC------DIDVYQFKFFAELVKEQVGERDSVIIMTHEPNWL 578 (983)
Q Consensus 521 ~~SYFAlrL----p------------~~wWLlGLDtql~g------dID~~Q~~wF~~ll~~~v~~~d~VIL~tHeP~w~ 578 (983)
+ ||.+.. + ...-++.+||..-. +....|.+|+++.++.+....+|+||+.|||.|+
T Consensus 149 ~--yY~~~~~f~~~~~~~~~~~~~~~~~v~fifiDT~~l~~~~~~~~~~~~~w~~L~~~L~~a~k~a~WkIVvGHhPIyS 226 (394)
T PTZ00422 149 Y--WYHYFTHFTDTSGPSLLKSGHKDMSVAFIFIDTWILSSSFPYKKVSERAWQDLKATLEYAPKIADYIIVVGDKPIYS 226 (394)
T ss_pred h--hheeeeeeecccccccccccCCCCEEEEEEEECchhcccCCccccCHHHHHHHHHHHHhhccCCCeEEEEecCceee
Confidence 6 886521 1 12688999997532 2346789999998864344568999999999999
Q ss_pred cccccCCcchhhHHHHHHhhh-CCceeEEEcCccCCCceeeecCCCCCcccceEEEecCCCCCCC-cCCcCCC
Q 002007 579 LDWYFNNVSGKNVKHLICDYL-KGRCKLRIAGDMHHYMRHSYVPSDGPVYVQHLLVNGCGGAFLH-PTHVFSN 649 (983)
Q Consensus 579 ~~~~~~~~~~~~l~~Lie~~L-~~RV~L~LAGHiHhYqR~~~~~~~G~~~~~~lIVsGGGGAfLh-PTH~~~~ 649 (983)
.+.++++. .+...++++| +++|+++||||.|+|||.+.. | .++|||||||+... +.+..+.
T Consensus 227 sG~hg~~~---~L~~~L~PLL~ky~VdlYisGHDH~lq~i~~~---g----t~yIvSGaGs~~~~~~~~~~~~ 289 (394)
T PTZ00422 227 SGSSKGDS---YLSYYLLPLLKDAQVDLYISGYDRNMEVLTDE---G----TAHINCGSGGNSGRKSIMKNSK 289 (394)
T ss_pred cCCCCCCH---HHHHHHHHHHHHcCcCEEEEccccceEEecCC---C----ceEEEeCccccccCCCCCCCCC
Confidence 98765432 2444556666 579999999999999998632 2 37999999997443 3444343
No 2
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=99.93 E-value=3.7e-25 Score=232.65 Aligned_cols=216 Identities=19% Similarity=0.233 Sum_probs=152.6
Q ss_pred eEEEEEeccCCC-CCCchHHHHHhcccccccccCCCccccCCccEEEEcccccCCCCChhhhhcccccchhhhcCCCCCC
Q 002007 382 LWFDFMADTGDG-GNSSYSVARLLAQPHIRVTRDDSVFTLPRGDVLLIGGDLAYPNPSAFTYERRLFRPFEYALQPPPWY 460 (983)
Q Consensus 382 lwFd~VaDtGDG-~dStYaVA~LmAqp~L~v~~~~~~~~lPRgdfLVlgGDlvYP~gs~e~Y~~Rf~~Pye~Al~~~~~~ 460 (983)
+.|.++||+|.+ .+.+.++++.|++...+ .++||+|++||++|+++...++..++.+.|+..+..
T Consensus 1 ~~f~~~gD~g~~~~~~~~~~~~~~~~~~~~----------~~~dfvv~~GD~~y~~g~~~~~~~~~~~~~~~~~~~---- 66 (277)
T cd07378 1 LRFLALGDWGGGGTAGQKAVAKAMAKVAAE----------LGPDFILSLGDNFYDDGVGSVDDPRFETTFEDVYSA---- 66 (277)
T ss_pred CeEEEEeecCCCCCHHHHHHHHHHHHHHHh----------cCCCEEEeCCCccccCCCCCCcchHHHHHHHHHccc----
Confidence 469999999987 67888999988875421 356999999999999987666666665666665431
Q ss_pred cccccccCCCCCCCCCcccccCCCCcEEEeCCCCCCCCChhHHHHHhhccccCCccccCCCcceEEEEcCC-----cEEE
Q 002007 461 KKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFDGLNTFMRFICHKSWLGGWFMPQKKSYFALQLPK-----GWWV 535 (983)
Q Consensus 461 ~~~~~~~~~pelp~~~~~l~~~~gP~ifAIPGNHDWyDGL~aF~r~F~~r~~lgGW~mpQ~~SYFAlrLp~-----~wWL 535 (983)
++ ...| +|+||||||+.++..+...+... .....|.+|. .||+++.+. +++|
T Consensus 67 ------------------~~-~~~P-~~~v~GNHD~~~~~~~~~~~~~~-~~~~~~~~~~--~~y~~~~~~~~~~~~~~~ 123 (277)
T cd07378 67 ------------------PS-LQVP-WYLVLGNHDYSGNVSAQIDYTKR-PNSPRWTMPA--YYYRVSFPFPSSDTTVEF 123 (277)
T ss_pred ------------------hh-hcCC-eEEecCCcccCCCchheeehhcc-CCCCCccCcc--hheEEEeecCCCCCEEEE
Confidence 11 2345 99999999998775554333211 0134455654 588999873 6999
Q ss_pred EEEecCCC---------------CCCCHHHHHHHHHHHHhhcCCCCeEEEEecCCCCccccccCCcchhhHHHHHHhhh-
Q 002007 536 FGLDLALH---------------CDIDVYQFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYL- 599 (983)
Q Consensus 536 lGLDtql~---------------gdID~~Q~~wF~~ll~~~v~~~d~VIL~tHeP~w~~~~~~~~~~~~~l~~Lie~~L- 599 (983)
++|||+.. +.+..+|++||++.|++ .+++++||++|||.+..+..... ...+..+++++
T Consensus 124 i~LDt~~~~~~~~~~~~~~~~~~~~~~~~Q~~wL~~~L~~--~~~~~~iv~~H~P~~~~~~~~~~---~~~~~~l~~l~~ 198 (277)
T cd07378 124 IMIDTVPLCGNSDDIASPYGPPNGKLAEEQLAWLEKTLAA--STADWKIVVGHHPIYSSGEHGPT---SCLVDRLLPLLK 198 (277)
T ss_pred EEEeChhHcCccccccccccCcchhhHHHHHHHHHHHHHh--cCCCeEEEEeCccceeCCCCCCc---HHHHHHHHHHHH
Confidence 99999853 22457899999999974 33489999999999976543221 11222334444
Q ss_pred CCceeEEEcCccCCCceeeecCCCCCcccceEEEecCCCCCCCcC
Q 002007 600 KGRCKLRIAGDMHHYMRHSYVPSDGPVYVQHLLVNGCGGAFLHPT 644 (983)
Q Consensus 600 ~~RV~L~LAGHiHhYqR~~~~~~~G~~~~~~lIVsGGGGAfLhPT 644 (983)
+++|+++|+||+|.|+++.+.. .+.++||+|+||+.....
T Consensus 199 ~~~v~~vl~GH~H~~~~~~~~~-----~~~~~i~~G~~~~~~~~~ 238 (277)
T cd07378 199 KYKVDAYLSGHDHNLQHIKDDG-----SGTSFVVSGAGSKARPSV 238 (277)
T ss_pred HcCCCEEEeCCcccceeeecCC-----CCcEEEEeCCCcccCCCC
Confidence 5689999999999999987643 134789999888754443
No 3
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver
Probab=99.92 E-value=1.9e-24 Score=228.81 Aligned_cols=222 Identities=18% Similarity=0.235 Sum_probs=146.0
Q ss_pred CCceEEEEEeccCCC-CCCchHHHHHhcccccccccCCCccccCCccEEEEcccccCCCCCh--hhhhcccccchhhhcC
Q 002007 379 KEDLWFDFMADTGDG-GNSSYSVARLLAQPHIRVTRDDSVFTLPRGDVLLIGGDLAYPNPSA--FTYERRLFRPFEYALQ 455 (983)
Q Consensus 379 d~~lwFd~VaDtGDG-~dStYaVA~LmAqp~L~v~~~~~~~~lPRgdfLVlgGDlvYP~gs~--e~Y~~Rf~~Pye~Al~ 455 (983)
+.++.|.++||+|.+ .++..++..+.++ . +++|+++++||++|..+.. ++++ .|++.++....
T Consensus 2 ~~~~~f~v~gD~~~~~~~~~~~~~~l~~~-~------------~~~d~vl~~GDl~~~~~~~~~~~~~-~~~~~~~~~~~ 67 (294)
T cd00839 2 DTPFKFAVFGDMGQNTNNSTNTLDHLEKE-L------------GNYDAILHVGDLAYADGYNNGSRWD-TFMRQIEPLAS 67 (294)
T ss_pred CCcEEEEEEEECCCCCCCcHHHHHHHHhc-c------------CCccEEEEcCchhhhcCCccchhHH-HHHHHHHHHHh
Confidence 578999999999974 4555556665544 1 2569999999999988764 3332 33333322110
Q ss_pred CCCCCcccccccCCCCCCCCCcccccCCCCcEEEeCCCCCCCCChhHHH-HHhhcccc-CCccccCCCcceEEEEcCCcE
Q 002007 456 PPPWYKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFDGLNTFM-RFICHKSW-LGGWFMPQKKSYFALQLPKGW 533 (983)
Q Consensus 456 ~~~~~~~~~~~~~~pelp~~~~~l~~~~gP~ifAIPGNHDWyDGL~aF~-r~F~~r~~-lgGW~mpQ~~SYFAlrLp~~w 533 (983)
..| ++++|||||......... +.+..+.. ...-.......||+++.++ +
T Consensus 68 ---------------------------~~P-~~~~~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ysf~~g~-v 118 (294)
T cd00839 68 ---------------------------YVP-YMVTPGNHEADYNFSFYKIKAFFPRFRFPHSPSGSTSNLWYSFDVGP-V 118 (294)
T ss_pred ---------------------------cCC-cEEcCcccccccCCCCcccccccccccccCCCCCCCCCceEEEeeCC-E
Confidence 234 999999999876533211 10000000 0000111234699999986 8
Q ss_pred EEEEEecCCCC---CCCHHHHHHHHHHHHhhcC-CCCeEEEEecCCCCccccccCCc-chhhHHHHHHhhh-CCceeEEE
Q 002007 534 WVFGLDLALHC---DIDVYQFKFFAELVKEQVG-ERDSVIIMTHEPNWLLDWYFNNV-SGKNVKHLICDYL-KGRCKLRI 607 (983)
Q Consensus 534 WLlGLDtql~g---dID~~Q~~wF~~ll~~~v~-~~d~VIL~tHeP~w~~~~~~~~~-~~~~l~~Lie~~L-~~RV~L~L 607 (983)
.+++||++... .+..+|++|+++.|++.-+ ..+|+|+++|+|.|..+...... .....+..+++++ +++|+++|
T Consensus 119 ~fi~Lds~~~~~~~~~~~~q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~~~l~~ll~~~~v~~vl 198 (294)
T cd00839 119 HFVSLSTEVDFYGDGPGSPQYDWLEADLAKVDRSKTPWIIVMGHRPMYCSNTDHDDCIEGEKMRAALEDLFYKYGVDLVL 198 (294)
T ss_pred EEEEEecccccccCCCCcHHHHHHHHHHHHhcccCCCeEEEEeccCcEecCccccccchhHHHHHHHHHHHHHhCCCEEE
Confidence 99999998654 6778999999999874222 23689999999999876543321 1222334445555 57999999
Q ss_pred cCccCCCceeeecCCC---------CCcccceEEEecCCCCCCCc
Q 002007 608 AGDMHHYMRHSYVPSD---------GPVYVQHLLVNGCGGAFLHP 643 (983)
Q Consensus 608 AGHiHhYqR~~~~~~~---------G~~~~~~lIVsGGGGAfLhP 643 (983)
+||+|.|+|..|..+. ....++.+||+|+||+-+.+
T Consensus 199 ~GH~H~y~r~~p~~~~~~~~~~~~~~~~~g~~yiv~G~~G~~~~~ 243 (294)
T cd00839 199 SGHVHAYERTCPVYNGTVVGDCNPYSNPKGPVHIVIGAGGNDEGL 243 (294)
T ss_pred EccceeeEeechhhCCEeccccccccCCCccEEEEECCCccccCc
Confidence 9999999999875321 11246689999999997764
No 4
>PLN02533 probable purple acid phosphatase
Probab=99.91 E-value=1.3e-23 Score=237.89 Aligned_cols=210 Identities=20% Similarity=0.298 Sum_probs=144.4
Q ss_pred CCCCceEEEEEeccCCCCCCchHHHHHhcccccccccCCCccccCCccEEEEcccccCCCCChhhhh--cccccchhhhc
Q 002007 377 SEKEDLWFDFMADTGDGGNSSYSVARLLAQPHIRVTRDDSVFTLPRGDVLLIGGDLAYPNPSAFTYE--RRLFRPFEYAL 454 (983)
Q Consensus 377 ~~d~~lwFd~VaDtGDG~dStYaVA~LmAqp~L~v~~~~~~~~lPRgdfLVlgGDlvYP~gs~e~Y~--~Rf~~Pye~Al 454 (983)
..+.++.|.++||+|.+.....+++.+.+ .++|+++++||++|.+......+ .++++|+..
T Consensus 135 p~~~~~~f~v~GDlG~~~~~~~tl~~i~~---------------~~pD~vl~~GDl~y~~~~~~~wd~f~~~i~~l~s-- 197 (427)
T PLN02533 135 PSKFPIKFAVSGDLGTSEWTKSTLEHVSK---------------WDYDVFILPGDLSYANFYQPLWDTFGRLVQPLAS-- 197 (427)
T ss_pred CCCCCeEEEEEEeCCCCcccHHHHHHHHh---------------cCCCEEEEcCccccccchHHHHHHHHHHhhhHhh--
Confidence 33568999999999976555545544321 24699999999999764321111 112222211
Q ss_pred CCCCCCcccccccCCCCCCCCCcccccCCCCcEEEeCCCCCCCCCh----hHHHHHhhccccCCccccCCC------cce
Q 002007 455 QPPPWYKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFDGL----NTFMRFICHKSWLGGWFMPQK------KSY 524 (983)
Q Consensus 455 ~~~~~~~~~~~~~~~pelp~~~~~l~~~~gP~ifAIPGNHDWyDGL----~aF~r~F~~r~~lgGW~mpQ~------~SY 524 (983)
..| ++++|||||....- ..|. .....|.||.. ..|
T Consensus 198 ----------------------------~~P-~m~~~GNHE~~~~~~~~~~~f~------~y~~rf~mP~~~~g~~~~~y 242 (427)
T PLN02533 198 ----------------------------QRP-WMVTHGNHELEKIPILHPEKFT------AYNARWRMPFEESGSTSNLY 242 (427)
T ss_pred ----------------------------cCc-eEEeCccccccccccccCcCcc------chhhcccCCccccCCCCCce
Confidence 235 99999999985321 1111 12345777753 249
Q ss_pred EEEEcCCcEEEEEEecCCCCCCCHHHHHHHHHHHHhhcC--CCCeEEEEecCCCCccccccCCc-chhhHHHHHHhhh-C
Q 002007 525 FALQLPKGWWVFGLDLALHCDIDVYQFKFFAELVKEQVG--ERDSVIIMTHEPNWLLDWYFNNV-SGKNVKHLICDYL-K 600 (983)
Q Consensus 525 FAlrLp~~wWLlGLDtql~gdID~~Q~~wF~~ll~~~v~--~~d~VIL~tHeP~w~~~~~~~~~-~~~~l~~Lie~~L-~ 600 (983)
|+++.+. +++++||++.....+.+|++||++.|++ .+ ..+|+|++.|+|.|..+..+.+. ....++..++++| +
T Consensus 243 YSfd~g~-vhfI~Lds~~~~~~~~~Q~~WLe~dL~~-~~r~~~pwiIv~~H~P~y~s~~~~~~~~~~~~~r~~le~Ll~~ 320 (427)
T PLN02533 243 YSFNVYG-VHIIMLGSYTDFEPGSEQYQWLENNLKK-IDRKTTPWVVAVVHAPWYNSNEAHQGEKESVGMKESMETLLYK 320 (427)
T ss_pred EEEEECC-EEEEEEeCCccccCchHHHHHHHHHHHh-hcccCCCEEEEEeCCCeeecccccCCcchhHHHHHHHHHHHHH
Confidence 9999986 8999999998777789999999999974 33 34789999999999876543322 1122344556666 6
Q ss_pred CceeEEEcCccCCCceeeecCCCC-CcccceEEEecCCCCC
Q 002007 601 GRCKLRIAGDMHHYMRHSYVPSDG-PVYVQHLLVNGCGGAF 640 (983)
Q Consensus 601 ~RV~L~LAGHiHhYqR~~~~~~~G-~~~~~~lIVsGGGGAf 640 (983)
++|+|+|+||+|.|+|..|....- ..+++.|||+|+||.-
T Consensus 321 ~~VdlvlsGH~H~YeR~~p~~~~~~~~~gpvyiv~G~gG~~ 361 (427)
T PLN02533 321 ARVDLVFAGHVHAYERFDRVYQGKTDKCGPVYITIGDGGNR 361 (427)
T ss_pred hCCcEEEecceecccccccccCCccCCCCCEEEEeCCCccc
Confidence 799999999999999998875321 1346799999999974
No 5
>KOG1378 consensus Purple acid phosphatase [Carbohydrate transport and metabolism]
Probab=99.85 E-value=1.8e-20 Score=211.32 Aligned_cols=216 Identities=17% Similarity=0.244 Sum_probs=157.1
Q ss_pred CCCceEEEEEeccCCCCCCchHHHHHhcccccccccCCCccccCCccEEEEcccccCCCCChh-hhh--cccccchhhhc
Q 002007 378 EKEDLWFDFMADTGDGGNSSYSVARLLAQPHIRVTRDDSVFTLPRGDVLLIGGDLAYPNPSAF-TYE--RRLFRPFEYAL 454 (983)
Q Consensus 378 ~d~~lwFd~VaDtGDG~dStYaVA~LmAqp~L~v~~~~~~~~lPRgdfLVlgGDlvYP~gs~e-~Y~--~Rf~~Pye~Al 454 (983)
++.+..|++.||+|....++-+...+++.+ .+|++++.||++|..+... ..+ .|+++|..+
T Consensus 144 ~~~~~~~~i~GDlG~~~~~~s~~~~~~~~~--------------k~d~vlhiGDlsYa~~~~n~~wD~f~r~vEp~As-- 207 (452)
T KOG1378|consen 144 QDSPTRAAIFGDMGCTEPYTSTLRNQEENL--------------KPDAVLHIGDLSYAMGYSNWQWDEFGRQVEPIAS-- 207 (452)
T ss_pred ccCceeEEEEccccccccccchHhHHhccc--------------CCcEEEEecchhhcCCCCccchHHHHhhhhhhhc--
Confidence 458899999999999888776766665543 4599999999999987552 222 466677754
Q ss_pred CCCCCCcccccccCCCCCCCCCcccccCCCCcEEEeCCCCCCCCChhHHHHHhhccccCCccccCCCcc------eEEEE
Q 002007 455 QPPPWYKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFDGLNTFMRFICHKSWLGGWFMPQKKS------YFALQ 528 (983)
Q Consensus 455 ~~~~~~~~~~~~~~~pelp~~~~~l~~~~gP~ifAIPGNHDWyDGL~aF~r~F~~r~~lgGW~mpQ~~S------YFAlr 528 (983)
..| .+++.||||.--.-+. |-.....+|.||.+.| ||+++
T Consensus 208 ----------------------------~vP-ymv~~GNHE~d~~~~~-----~F~~y~~Rf~mP~~~s~s~~~l~YSfd 253 (452)
T KOG1378|consen 208 ----------------------------YVP-YMVCSGNHEIDWPPQP-----CFVPYSARFNMPGNSSESDSNLYYSFD 253 (452)
T ss_pred ----------------------------cCc-eEEecccccccCCCcc-----cccccceeeccCCCcCCCCCceeEEEe
Confidence 235 9999999986311111 2233455688986654 99999
Q ss_pred cCCcEEEEEEecCCCCC--CCHHHHHHHHHHHHhhcCC--CCeEEEEecCCCCcccc--ccCCcchhhHHHHHHhhh-CC
Q 002007 529 LPKGWWVFGLDLALHCD--IDVYQFKFFAELVKEQVGE--RDSVIIMTHEPNWLLDW--YFNNVSGKNVKHLICDYL-KG 601 (983)
Q Consensus 529 Lp~~wWLlGLDtql~gd--ID~~Q~~wF~~ll~~~v~~--~d~VIL~tHeP~w~~~~--~~~~~~~~~l~~Lie~~L-~~ 601 (983)
+.. .++++|+|+.... .-.+|++||++.|+ +++. .+|+|++.|.|.|.++. +-..-..+..++-+|++| ++
T Consensus 254 ~G~-vhfv~lsse~~~~~~~~~~QY~WL~~dL~-~v~r~~tPWlIv~~HrP~Y~S~~~~~~reG~~~~~~~~LE~l~~~~ 331 (452)
T KOG1378|consen 254 VGG-VHFVVLSTETYYNFLKGTAQYQWLERDLA-SVDRKKTPWLIVQGHRPMYCSSNDAHYREGEFESMREGLEPLFVKY 331 (452)
T ss_pred ecc-EEEEEEeccccccccccchHHHHHHHHHH-HhcccCCCeEEEEecccceecCCchhhccCcchhhHHHHHHHHHHh
Confidence 997 8999999987642 34689999999996 4655 59999999999999976 321111123334457777 88
Q ss_pred ceeEEEcCccCCCceeeecCCC------C-----CcccceEEEecCCCC--CCCcCC
Q 002007 602 RCKLRIAGDMHHYMRHSYVPSD------G-----PVYVQHLLVNGCGGA--FLHPTH 645 (983)
Q Consensus 602 RV~L~LAGHiHhYqR~~~~~~~------G-----~~~~~~lIVsGGGGA--fLhPTH 645 (983)
+||++|+||.|.|+|..|.... | ...+|.+||.|+||+ -+.|-.
T Consensus 332 ~VDvvf~GHvH~YER~~piyn~~~~~~~~~~~~~d~~aPvyI~~G~~G~~e~~~~~~ 388 (452)
T KOG1378|consen 332 KVDVVFWGHVHRYERFCPIYNNTCGTGWGPVHLVDGMAPIYITVGDGGNHEHLDPFS 388 (452)
T ss_pred ceeEEEeccceehhccchhhcceeeccCCcccccCCCCCEEEEEccCCcccccCccc
Confidence 9999999999999999887421 2 245789999999995 444443
No 6
>KOG2679 consensus Purple (tartrate-resistant) acid phosphatase [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=3.5e-20 Score=197.11 Aligned_cols=224 Identities=19% Similarity=0.213 Sum_probs=158.7
Q ss_pred CCCCceEEEEEeccC-CCCCCchHHHHHhcccccccccCCCccccCCccEEEEcccccCCCCChhhhhcccccchhhhcC
Q 002007 377 SEKEDLWFDFMADTG-DGGNSSYSVARLLAQPHIRVTRDDSVFTLPRGDVLLIGGDLAYPNPSAFTYERRLFRPFEYALQ 455 (983)
Q Consensus 377 ~~d~~lwFd~VaDtG-DG~dStYaVA~LmAqp~L~v~~~~~~~~lPRgdfLVlgGDlvYP~gs~e~Y~~Rf~~Pye~Al~ 455 (983)
.+++.+.|.+|||+| .|.-.|-+||..|+.-..+ ...|||+-.||+.|-+|-.+.++.||...|+..+.
T Consensus 39 ~~dgslsflvvGDwGr~g~~nqs~va~qmg~ige~----------l~idfvlS~GDNfYd~G~~~~~Dp~Fq~sF~nIYT 108 (336)
T KOG2679|consen 39 KSDGSLSFLVVGDWGRRGSFNQSQVALQMGEIGEK----------LDIDFVLSTGDNFYDTGLTSENDPRFQDSFENIYT 108 (336)
T ss_pred CCCCceEEEEEcccccCCchhHHHHHHHHHhHHHh----------ccceEEEecCCcccccCCCCCCChhHHhhhhhccc
Confidence 357899999999999 5666888899988764432 35699999999999999999999999999999886
Q ss_pred CCCCCcccccccCCCCCCCCCcccccCCCCcEEEeCCCCCCCCChhHHHHHhhccccCCccccCCCcceEEEEcCCcEEE
Q 002007 456 PPPWYKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFDGLNTFMRFICHKSWLGGWFMPQKKSYFALQLPKGWWV 535 (983)
Q Consensus 456 ~~~~~~~~~~~~~~pelp~~~~~l~~~~gP~ifAIPGNHDWyDGL~aF~r~F~~r~~lgGW~mpQ~~SYFAlrLp~~wWL 535 (983)
. |.| +.| ||.|.||||+..+.+|++.-... +.-.+|.-| +|||..- .. .=+
T Consensus 109 ~-------------pSL----------Qkp-Wy~vlGNHDyrGnV~AQls~~l~-~~d~RW~c~--rsf~~~a-e~-ve~ 159 (336)
T KOG2679|consen 109 A-------------PSL----------QKP-WYSVLGNHDYRGNVEAQLSPVLR-KIDKRWICP--RSFYVDA-EI-VEM 159 (336)
T ss_pred C-------------ccc----------ccc-hhhhccCccccCchhhhhhHHHH-hhccceecc--cHHhhcc-ee-eee
Confidence 4 343 335 99999999999999998884332 112335433 4554332 11 123
Q ss_pred EEEecCCC---------CCC------------CHHHHHHHHHHHHhhcCCCCeEEEEecCCCCccccccCCcchhhHHHH
Q 002007 536 FGLDLALH---------CDI------------DVYQFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHL 594 (983)
Q Consensus 536 lGLDtql~---------gdI------------D~~Q~~wF~~ll~~~v~~~d~VIL~tHeP~w~~~~~~~~~~~~~l~~L 594 (983)
++.|+..- +++ -+.|+.||+..+++ ...+|+||+.|||.|+.+.|+.. +.++..
T Consensus 160 f~v~~~~f~~d~~~~~~~~~ydw~~v~PR~~~~~~~l~~le~~L~~--S~a~wkiVvGHh~i~S~~~HG~T---~eL~~~ 234 (336)
T KOG2679|consen 160 FFVDTTPFMDDTFTLCTDDVYDWRGVLPRVKYLRALLSWLEVALKA--SRAKWKIVVGHHPIKSAGHHGPT---KELEKQ 234 (336)
T ss_pred eccccccchhhheecccccccccccCChHHHHHHHHHHHHHHHHHH--hhcceEEEecccceehhhccCCh---HHHHHH
Confidence 33443321 111 13578889888875 45689999999999998866542 123333
Q ss_pred HHhhh-CCceeEEEcCccCCCceeeecCCCCCcccceEEEecCCCCCCCcCCcCCC
Q 002007 595 ICDYL-KGRCKLRIAGDMHHYMRHSYVPSDGPVYVQHLLVNGCGGAFLHPTHVFSN 649 (983)
Q Consensus 595 ie~~L-~~RV~L~LAGHiHhYqR~~~~~~~G~~~~~~lIVsGGGGAfLhPTH~~~~ 649 (983)
+.++| ..+|+++++||.|..|...-.. ++.+++|||||.--=..|+..|+
T Consensus 235 LlPiL~~n~VdlY~nGHDHcLQhis~~e-----~~iqf~tSGagSkaw~g~~~~~~ 285 (336)
T KOG2679|consen 235 LLPILEANGVDLYINGHDHCLQHISSPE-----SGIQFVTSGAGSKAWRGTDHNPE 285 (336)
T ss_pred HHHHHHhcCCcEEEecchhhhhhccCCC-----CCeeEEeeCCcccccCCCccCCc
Confidence 34444 4699999999999999886432 35589999997765566666664
No 7
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain. CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th
Probab=99.72 E-value=1.7e-16 Score=166.80 Aligned_cols=177 Identities=19% Similarity=0.220 Sum_probs=109.4
Q ss_pred CCccEEEEcccccCCCCChhhhhcccccchhhhcCCCCCCcccccccCCCCCCCCCcccccCCCCcEEEeCCCCCCCCCh
Q 002007 421 PRGDVLLIGGDLAYPNPSAFTYERRLFRPFEYALQPPPWYKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFDGL 500 (983)
Q Consensus 421 PRgdfLVlgGDlvYP~gs~e~Y~~Rf~~Pye~Al~~~~~~~~~~~~~~~pelp~~~~~l~~~~gP~ifAIPGNHDWyDGL 500 (983)
|++|+|+++||++..+...+ +..+..+.+...++. + . .+.++++||||||..+..
T Consensus 48 ~~pd~ii~~GDl~~~~~~~~-~~~~~~~~~~~~~~~---------------~--------~-~~vp~~~i~GNHD~~~~~ 102 (262)
T cd07395 48 PKPKFVVVCGDLVNAMPGDE-LRERQVSDLKDVLSL---------------L--------D-PDIPLVCVCGNHDVGNTP 102 (262)
T ss_pred CCCCEEEEeCCcCCCCcchh-hHHHHHHHHHHHHhh---------------c--------c-CCCcEEEeCCCCCCCCCC
Confidence 56799999999998765432 322222344443321 0 0 123499999999985331
Q ss_pred -hHHHHHhhccccCCccccCCCcceEEEEcCCcEEEEEEecCCCC------CCCHHHHHHHHHHHHhhc-CCCCeEEEEe
Q 002007 501 -NTFMRFICHKSWLGGWFMPQKKSYFALQLPKGWWVFGLDLALHC------DIDVYQFKFFAELVKEQV-GERDSVIIMT 572 (983)
Q Consensus 501 -~aF~r~F~~r~~lgGW~mpQ~~SYFAlrLp~~wWLlGLDtql~g------dID~~Q~~wF~~ll~~~v-~~~d~VIL~t 572 (983)
...++.|.+ . ....||+...++ +++++||++... .++.+|++|+++.+++.- ..+.++||++
T Consensus 103 ~~~~~~~f~~-~--------~g~~~y~~~~~~-~~~i~lds~~~~~~~~~~~~~~~ql~WL~~~L~~~~~~~~~~~iv~~ 172 (262)
T cd07395 103 TEESIKDYRD-V--------FGDDYFSFWVGG-VFFIVLNSQLFFDPSEVPELAQAQDVWLEEQLEIAKESDCKHVIVFQ 172 (262)
T ss_pred ChhHHHHHHH-H--------hCCcceEEEECC-EEEEEeccccccCccccccchHHHHHHHHHHHHHHHhccCCcEEEEE
Confidence 111121211 0 112478888765 899999997532 356789999999997422 2457999999
Q ss_pred cCCCCccccccCCc----chhhHHHHHHhhh-CCceeEEEcCccCCCceeeecCCCCCcccceEEEecCCCCC
Q 002007 573 HEPNWLLDWYFNNV----SGKNVKHLICDYL-KGRCKLRIAGDMHHYMRHSYVPSDGPVYVQHLLVNGCGGAF 640 (983)
Q Consensus 573 HeP~w~~~~~~~~~----~~~~l~~Lie~~L-~~RV~L~LAGHiHhYqR~~~~~~~G~~~~~~lIVsGGGGAf 640 (983)
|+|.+..+....+. ..++. ..+.+++ +++|+++||||+|.+.+... . | .+++++|+.|..
T Consensus 173 H~P~~~~~~~~~~~~~~~~~~~~-~~l~~ll~~~~V~~v~~GH~H~~~~~~~-~--g----~~~~~~~~~~~~ 237 (262)
T cd07395 173 HIPWFLEDPDEEDSYFNIPKSVR-KPLLDKFKKAGVKAVFSGHYHRNAGGRY-G--G----LEMVVTSAIGAQ 237 (262)
T ss_pred CcCCccCCCCCCcccCCcCHHHH-HHHHHHHHhcCceEEEECccccCCceEE-C--C----EEEEEcCceecc
Confidence 99998654321111 11222 2234444 57899999999998776432 1 2 367888887763
No 8
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=99.68 E-value=5e-16 Score=159.75 Aligned_cols=169 Identities=20% Similarity=0.330 Sum_probs=107.4
Q ss_pred CCccEEEEcccccCCCCChhhhhcccccchhhhcCCCCCCcccccccCCCCCCCCCcccccCCCCcEEEeCCCCCCCCCh
Q 002007 421 PRGDVLLIGGDLAYPNPSAFTYERRLFRPFEYALQPPPWYKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFDGL 500 (983)
Q Consensus 421 PRgdfLVlgGDlvYP~gs~e~Y~~Rf~~Pye~Al~~~~~~~~~~~~~~~pelp~~~~~l~~~~gP~ifAIPGNHDWyDGL 500 (983)
+++|++|++||++.. +..++|+. +...+. .+..| ++.||||||..+.
T Consensus 39 ~~~d~vi~~GDl~~~-~~~~~~~~-----~~~~l~-------------------------~~~~p-~~~v~GNHD~~~~- 85 (240)
T cd07402 39 PRPDLVLVTGDLTDD-GSPESYER-----LRELLA-------------------------ALPIP-VYLLPGNHDDRAA- 85 (240)
T ss_pred CCCCEEEECccCCCC-CCHHHHHH-----HHHHHh-------------------------hcCCC-EEEeCCCCCCHHH-
Confidence 567999999999975 33333421 222221 12335 9999999998543
Q ss_pred hHHHHHhhccccCCccccCCCcceEEEEcCCcEEEEEEecCCC----CCCCHHHHHHHHHHHHhhcCCCCeEEEEecCCC
Q 002007 501 NTFMRFICHKSWLGGWFMPQKKSYFALQLPKGWWVFGLDLALH----CDIDVYQFKFFAELVKEQVGERDSVIIMTHEPN 576 (983)
Q Consensus 501 ~aF~r~F~~r~~lgGW~mpQ~~SYFAlrLp~~wWLlGLDtql~----gdID~~Q~~wF~~ll~~~v~~~d~VIL~tHeP~ 576 (983)
+.+++..... .....+|+++.+. +.+++||+... +.+++.|++|+++.+++ .+++++|+++|||+
T Consensus 86 --~~~~~~~~~~------~~~~~~~~~~~~~-~~~i~lds~~~~~~~~~~~~~ql~wL~~~L~~--~~~~~~il~~H~pp 154 (240)
T cd07402 86 --MRAVFPELPP------APGFVQYVVDLGG-WRLILLDSSVPGQHGGELCAAQLDWLEAALAE--APDKPTLVFLHHPP 154 (240)
T ss_pred --HHHhhccccc------cccccceeEecCC-EEEEEEeCCCCCCcCCEECHHHHHHHHHHHHh--CCCCCEEEEECCCC
Confidence 3344422111 1223467888874 99999998753 34678999999999975 23679999999998
Q ss_pred Ccccccc-CCcchhhHHHHHHhhh-CC-ceeEEEcCccCCCceeeecCCCCCcccceEEEecCCCCCC
Q 002007 577 WLLDWYF-NNVSGKNVKHLICDYL-KG-RCKLRIAGDMHHYMRHSYVPSDGPVYVQHLLVNGCGGAFL 641 (983)
Q Consensus 577 w~~~~~~-~~~~~~~l~~Lie~~L-~~-RV~L~LAGHiHhYqR~~~~~~~G~~~~~~lIVsGGGGAfL 641 (983)
+...... +.....+. ..+.+++ ++ +++++|+||+|.++..... +.+++++|+.|.-.
T Consensus 155 ~~~~~~~~~~~~~~~~-~~~~~~l~~~~~v~~v~~GH~H~~~~~~~~-------g~~~~~~gs~~~~~ 214 (240)
T cd07402 155 FPVGIAWMDAIGLRNA-EALAAVLARHPNVRAILCGHVHRPIDGSWG-------GIPLLTAPSTCHQF 214 (240)
T ss_pred ccCCchhhhhhhCCCH-HHHHHHHhcCCCeeEEEECCcCchHHeEEC-------CEEEEEcCcceeee
Confidence 7653211 11111122 2233344 45 8999999999987665431 23778888866533
No 9
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.68 E-value=9.5e-16 Score=162.91 Aligned_cols=137 Identities=18% Similarity=0.128 Sum_probs=88.7
Q ss_pred cEEEeCCCCCCCCChhHHHHHhhccccCCccccCCCcceEEEEcCCcEEEEEEecCC-----------------------
Q 002007 486 QCYIIPGNHDWFDGLNTFMRFICHKSWLGGWFMPQKKSYFALQLPKGWWVFGLDLAL----------------------- 542 (983)
Q Consensus 486 ~ifAIPGNHDWyDGL~aF~r~F~~r~~lgGW~mpQ~~SYFAlrLp~~wWLlGLDtql----------------------- 542 (983)
+++.+|||||+++....... . . ........||+++.. +|.+++||+..
T Consensus 75 p~~~v~GNHD~~~~~~~~~~---~-~----~~~~~~~~yysf~~~-~~~~i~lds~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (267)
T cd07396 75 PVHHVLGNHDLYNPSREYLL---L-Y----TLLGLGAPYYSFSPG-GIRFIVLDGYDISALGRPEDTPKAENADDNSNLG 145 (267)
T ss_pred CEEEecCccccccccHhhhh---c-c----cccCCCCceEEEecC-CcEEEEEeCCccccccCCCCChhhhhHHHhchhh
Confidence 39999999999866432211 0 0 111133458999766 69999999963
Q ss_pred -----------CCCCCHHHHHHHHHHHHhhcCCCCeEEEEecCCCCccccccCCcchhhHHHHHHhhh-C-CceeEEEcC
Q 002007 543 -----------HCDIDVYQFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYL-K-GRCKLRIAG 609 (983)
Q Consensus 543 -----------~gdID~~Q~~wF~~ll~~~v~~~d~VIL~tHeP~w~~~~~~~~~~~~~l~~Lie~~L-~-~RV~L~LAG 609 (983)
.+.++.+|++|+++.+++..+.+.++||++|||.+..... ......+.+. +.+++ + .+|+++|+|
T Consensus 146 ~~~~~~~~~~~~G~l~~~Ql~WL~~~L~~~~~~~~~viV~~Hhp~~~~~~~-~~~~~~~~~~-~~~ll~~~~~V~~v~~G 223 (267)
T cd07396 146 LYLSEPRFVDWNGGIGEEQLQWLRNELQEADANGEKVIIFSHFPLHPESTS-PHGLLWNHEE-VLSILRAYGCVKACISG 223 (267)
T ss_pred hhccCccceeccCcCCHHHHHHHHHHHHHHHhcCCeEEEEEeccCCCCCCC-ccccccCHHH-HHHHHHhCCCEEEEEcC
Confidence 3457789999999999754345678999999998865531 1111112222 23333 3 479999999
Q ss_pred ccCCCceeeecCCCCCcccceEEEecCCCCC
Q 002007 610 DMHHYMRHSYVPSDGPVYVQHLLVNGCGGAF 640 (983)
Q Consensus 610 HiHhYqR~~~~~~~G~~~~~~lIVsGGGGAf 640 (983)
|+|.++... . . +.+++++|+=.-.
T Consensus 224 H~H~~~~~~-~--~----gi~~~~~~a~~~~ 247 (267)
T cd07396 224 HDHEGGYAQ-R--H----GIHFLTLEGMVET 247 (267)
T ss_pred CcCCCCccc-c--C----CeeEEEechhhcC
Confidence 999886443 1 1 3367887775443
No 10
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=99.60 E-value=2.7e-14 Score=152.26 Aligned_cols=199 Identities=20% Similarity=0.305 Sum_probs=112.8
Q ss_pred CCCceEEEEEeccC---CCC------CCchHHHHHhcccccccccCCCccccCCccEEEEcccccCCCCChhhhhccccc
Q 002007 378 EKEDLWFDFMADTG---DGG------NSSYSVARLLAQPHIRVTRDDSVFTLPRGDVLLIGGDLAYPNPSAFTYERRLFR 448 (983)
Q Consensus 378 ~d~~lwFd~VaDtG---DG~------dStYaVA~LmAqp~L~v~~~~~~~~lPRgdfLVlgGDlvYP~gs~e~Y~~Rf~~ 448 (983)
.++++.|..++|+= +.. +...+..+++++-. ...+.+|+||++||++- .++.++|+. +
T Consensus 11 ~~~~~~i~~iSD~Hl~~~~~~~~~~~~~~~~l~~~i~~i~---------~~~~~~D~vvitGDl~~-~~~~~~~~~-~-- 77 (275)
T PRK11148 11 GEARVRILQITDTHLFADEHETLLGVNTWESYQAVLEAIR---------AQQHEFDLIVATGDLAQ-DHSSEAYQH-F-- 77 (275)
T ss_pred CCCCEEEEEEcCcccCCCCCCceeccCHHHHHHHHHHHHH---------hhCCCCCEEEECCCCCC-CCCHHHHHH-H--
Confidence 35779999999993 211 22222333333211 01245799999999987 455555532 2
Q ss_pred chhhhcCCCCCCcccccccCCCCCCCCCcccccCCCCcEEEeCCCCCCCCChhHHHHHhhccccCCccccCCCcceEEEE
Q 002007 449 PFEYALQPPPWYKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFDGLNTFMRFICHKSWLGGWFMPQKKSYFALQ 528 (983)
Q Consensus 449 Pye~Al~~~~~~~~~~~~~~~pelp~~~~~l~~~~gP~ifAIPGNHDWyDGL~aF~r~F~~r~~lgGW~mpQ~~SYFAlr 528 (983)
...+ +.+..| +|+||||||.+.. +.+++... ++. ..|+.+.
T Consensus 78 --~~~l-------------------------~~l~~P-v~~v~GNHD~~~~---~~~~~~~~----~~~----~~~~~~~ 118 (275)
T PRK11148 78 --AEGI-------------------------APLRKP-CVWLPGNHDFQPA---MYSALQDA----GIS----PAKHVLI 118 (275)
T ss_pred --HHHH-------------------------hhcCCc-EEEeCCCCCChHH---HHHHHhhc----CCC----ccceEEe
Confidence 2222 122345 9999999998654 33333211 121 1233333
Q ss_pred cCCcEEEEEEecCC----CCCCCHHHHHHHHHHHHhhcCCCCeEEEEecCCCCcccccc-CCcchhhHHHHHHhhh-CC-
Q 002007 529 LPKGWWVFGLDLAL----HCDIDVYQFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYF-NNVSGKNVKHLICDYL-KG- 601 (983)
Q Consensus 529 Lp~~wWLlGLDtql----~gdID~~Q~~wF~~ll~~~v~~~d~VIL~tHeP~w~~~~~~-~~~~~~~l~~Lie~~L-~~- 601 (983)
..+|.+++||+.. .+.++.+|++|+++.+++ . +++++||+.|||+...+..+ +.....+-+.+ .+++ ++
T Consensus 119 -~~~~~~i~Lds~~~g~~~G~l~~~ql~wL~~~L~~-~-~~~~~vv~~hH~P~~~~~~~~d~~~l~n~~~l-~~ll~~~~ 194 (275)
T PRK11148 119 -GEHWQILLLDSQVFGVPHGELSEYQLEWLERKLAD-A-PERHTLVLLHHHPLPAGCAWLDQHSLRNAHEL-AEVLAKFP 194 (275)
T ss_pred -cCCEEEEEecCCCCCCcCCEeCHHHHHHHHHHHhh-C-CCCCeEEEEcCCCCCCCcchhhccCCCCHHHH-HHHHhcCC
Confidence 4459999999975 456788999999999974 2 34555665665443332211 11112222232 3334 44
Q ss_pred ceeEEEcCccCCCceeeecCCCCCcccceEEEecCCCC
Q 002007 602 RCKLRIAGDMHHYMRHSYVPSDGPVYVQHLLVNGCGGA 639 (983)
Q Consensus 602 RV~L~LAGHiHhYqR~~~~~~~G~~~~~~lIVsGGGGA 639 (983)
+|+++|+||+|....... .+..++++++.+.
T Consensus 195 ~v~~vl~GH~H~~~~~~~-------~gi~~~~~ps~~~ 225 (275)
T PRK11148 195 NVKAILCGHIHQELDLDW-------NGRRLLATPSTCV 225 (275)
T ss_pred CceEEEecccChHHhceE-------CCEEEEEcCCCcC
Confidence 799999999997543321 1225677666554
No 11
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain. TMEM62 (transmembrane protein 62) is an uncharacterized Homo sapiens transmembrane protein with an N-terminal metallophosphatase domain. TMEM62 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.59 E-value=1.1e-14 Score=154.53 Aligned_cols=130 Identities=17% Similarity=0.142 Sum_probs=81.2
Q ss_pred cEEEeCCCCCCCCCh--hHHHHHhhccccCCccccCCCcceEEEEc-CCcEEEEEEecCCC----------CCCCHHHHH
Q 002007 486 QCYIIPGNHDWFDGL--NTFMRFICHKSWLGGWFMPQKKSYFALQL-PKGWWVFGLDLALH----------CDIDVYQFK 552 (983)
Q Consensus 486 ~ifAIPGNHDWyDGL--~aF~r~F~~r~~lgGW~mpQ~~SYFAlrL-p~~wWLlGLDtql~----------gdID~~Q~~ 552 (983)
+++.||||||.|+-. +.+.+++. ++. ++.++... ||.... -.++.++|||++.. +.+++.|++
T Consensus 78 p~~~v~GNHD~~~~~~~~~~~~~~~--~y~-~~~~~~~~-~~~~~~~~~~~~~I~Ldt~~~~~~~~~~~~~g~l~~~ql~ 153 (256)
T cd07401 78 KWFDIRGNHDLFNIPSLDSENNYYR--KYS-ATGRDGSF-SFSHTTRFGNYSFIGVDPTLFPGPKRPFNFFGSLDKKLLD 153 (256)
T ss_pred eEEEeCCCCCcCCCCCccchhhHHH--Hhh-eecCCCcc-ceEEEecCCCEEEEEEcCccCCCCCCCCceeccCCHHHHH
Confidence 499999999997321 22233331 111 22222222 333322 23599999999742 567799999
Q ss_pred HHHHHHHhhcCCCCeEEEEecCCCCccccccCCcchhhHHHHHHhhhCCceeEEEcCccCCCceeeecCCCC
Q 002007 553 FFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMRHSYVPSDG 624 (983)
Q Consensus 553 wF~~ll~~~v~~~d~VIL~tHeP~w~~~~~~~~~~~~~l~~Lie~~L~~RV~L~LAGHiHhYqR~~~~~~~G 624 (983)
|+++.+++ .++++++||++|+|.+....... .....+..+++ +++|+++||||+|.+++..|..-.|
T Consensus 154 wL~~~L~~-~~~~~~~IV~~HhP~~~~~~~~~-~~~~~~~~ll~---~~~v~~vl~GH~H~~~~~~p~h~~~ 220 (256)
T cd07401 154 RLEKELEK-STNSNYTIWFGHYPTSTIISPSA-KSSSKFKDLLK---KYNVTAYLCGHLHPLGGLEPVHYAG 220 (256)
T ss_pred HHHHHHHh-cccCCeEEEEEcccchhccCCCc-chhHHHHHHHH---hcCCcEEEeCCccCCCcceeeeecC
Confidence 99998864 44567999999999865432111 11111323333 4689999999999999967664333
No 12
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=99.52 E-value=1e-13 Score=143.59 Aligned_cols=126 Identities=18% Similarity=0.221 Sum_probs=82.7
Q ss_pred CccEEEEcccccCCCCChhhhhcccccchhhhcCCCCCCcccccccCCCCCCCCCcccccCCCCcEEEeCCCCCCCCChh
Q 002007 422 RGDVLLIGGDLAYPNPSAFTYERRLFRPFEYALQPPPWYKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFDGLN 501 (983)
Q Consensus 422 RgdfLVlgGDlvYP~gs~e~Y~~Rf~~Pye~Al~~~~~~~~~~~~~~~pelp~~~~~l~~~~gP~ifAIPGNHDWyDGL~ 501 (983)
++|+++++||++..+...++|+. +.+-++. +++...| ++++|||||
T Consensus 35 ~~d~iv~~GDl~~~~~~~~~~~~-~~~~~~~--------------------------l~~~~~p-~~~~~GNHD------ 80 (214)
T cd07399 35 NIAFVLHLGDIVDDGDNDAEWEA-ADKAFAR--------------------------LDKAGIP-YSVLAGNHD------ 80 (214)
T ss_pred CCCEEEECCCccCCCCCHHHHHH-HHHHHHH--------------------------HHHcCCc-EEEECCCCc------
Confidence 56999999999986654444432 1111111 1111234 999999999
Q ss_pred HHHHHhhccccCCccccCCCcceEEEEcCCcEEEEEEecCCCCCCCHHHHHHHHHHHHhhcCCCCeEEEEecCCCCcccc
Q 002007 502 TFMRFICHKSWLGGWFMPQKKSYFALQLPKGWWVFGLDLALHCDIDVYQFKFFAELVKEQVGERDSVIIMTHEPNWLLDW 581 (983)
Q Consensus 502 aF~r~F~~r~~lgGW~mpQ~~SYFAlrLp~~wWLlGLDtql~gdID~~Q~~wF~~ll~~~v~~~d~VIL~tHeP~w~~~~ 581 (983)
.++++|+ .++.+|++||++++++ .++.++|+++|||.+..+.
T Consensus 81 --------------------------------~~~~ld~----~~~~~ql~WL~~~L~~--~~~~~~iv~~H~p~~~~~~ 122 (214)
T cd07399 81 --------------------------------LVLALEF----GPRDEVLQWANEVLKK--HPDRPAILTTHAYLNCDDS 122 (214)
T ss_pred --------------------------------chhhCCC----CCCHHHHHHHHHHHHH--CCCCCEEEEecccccCCCC
Confidence 1344443 3568999999999974 4467999999999996654
Q ss_pred ccCCc----chhhHHHHHHhhh-CC-ceeEEEcCccCCCceeee
Q 002007 582 YFNNV----SGKNVKHLICDYL-KG-RCKLRIAGDMHHYMRHSY 619 (983)
Q Consensus 582 ~~~~~----~~~~l~~Lie~~L-~~-RV~L~LAGHiHhYqR~~~ 619 (983)
..+.. ...+.+..+++++ ++ +|+++||||+|.+.+-..
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~ll~~~~~V~~v~~GH~H~~~~~~~ 166 (214)
T cd07399 123 RPDSIDYDSDVNDGQQIWDKLVKKNDNVFMVLSGHVHGAGRTTL 166 (214)
T ss_pred cCcccccccccccHHHHHHHHHhCCCCEEEEEccccCCCceEEE
Confidence 32211 0123334456666 44 799999999999877654
No 13
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=99.49 E-value=3.2e-14 Score=129.07 Aligned_cols=193 Identities=17% Similarity=0.210 Sum_probs=94.4
Q ss_pred eEEEEEeccCCCCCCchHHHHHhcccccccccCCCccccCCccEEEEcccccCCCCChhhhhcccccchhhhcCCCCCCc
Q 002007 382 LWFDFMADTGDGGNSSYSVARLLAQPHIRVTRDDSVFTLPRGDVLLIGGDLAYPNPSAFTYERRLFRPFEYALQPPPWYK 461 (983)
Q Consensus 382 lwFd~VaDtGDG~dStYaVA~LmAqp~L~v~~~~~~~~lPRgdfLVlgGDlvYP~gs~e~Y~~Rf~~Pye~Al~~~~~~~ 461 (983)
+.|.+++|+.-+............+.. ..+++|++|++||+++.+...+.....+. ......
T Consensus 1 ~ri~~isD~H~~~~~~~~~~~~~~~~~----------~~~~~d~ii~~GD~~~~~~~~~~~~~~~~-~~~~~~------- 62 (200)
T PF00149_consen 1 MRILVISDLHGGYDDDSDAFRKLDEIA----------AENKPDFIIFLGDLVDGGNPSEEWRAQFW-FFIRLL------- 62 (200)
T ss_dssp EEEEEEEBBTTTHHHHCHHHHHHHHHH----------HHTTTSEEEEESTSSSSSSHHHHHHHHHH-HHHHHH-------
T ss_pred CeEEEEcCCCCCCcchhHHHHHHHHHh----------ccCCCCEEEeeccccccccccccchhhhc-cchhhh-------
Confidence 468999999655443211122221111 12467999999999998776544444331 011100
Q ss_pred ccccccCCCCCCCCCcccccCCCCcEEEeCCCCCCCCChhHHHHHhhc-ccc--CC-ccccCCCcceEEEEcCCcEEEEE
Q 002007 462 KDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFDGLNTFMRFICH-KSW--LG-GWFMPQKKSYFALQLPKGWWVFG 537 (983)
Q Consensus 462 ~~~~~~~~pelp~~~~~l~~~~gP~ifAIPGNHDWyDGL~aF~r~F~~-r~~--lg-GW~mpQ~~SYFAlrLp~~wWLlG 537 (983)
. ...+++.++||||++.+.......... ... .. .+...++. ........ .+...
T Consensus 63 -------------------~-~~~~~~~~~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~ 120 (200)
T PF00149_consen 63 -------------------N-PKIPVYFILGNHDYYSGNSFYGFYDYQFEDYYGNYNYYYSYFNN-KVIFDNDN-FWFNS 120 (200)
T ss_dssp -------------------H-TTTTEEEEE-TTSSHHHHHHHHHHHHHHSSEEECSSEEECTESS-EEEEEETT-EEEEE
T ss_pred -------------------h-ccccccccccccccceeccccccccccccccccccccccccCcc-eeeecccc-ccccc
Confidence 1 223499999999998654332222111 110 00 01110110 01122222 12222
Q ss_pred EecCCCCCCC-HHHHHHHHHHHHhhcCCCCeEEEEecCCCCccccccCCc-chhhHHHHHHhhh-CCceeEEEcCccCCC
Q 002007 538 LDLALHCDID-VYQFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNV-SGKNVKHLICDYL-KGRCKLRIAGDMHHY 614 (983)
Q Consensus 538 LDtql~gdID-~~Q~~wF~~ll~~~v~~~d~VIL~tHeP~w~~~~~~~~~-~~~~l~~Lie~~L-~~RV~L~LAGHiHhY 614 (983)
.+........ ..|..|..........+.+++||++|+|.+......... ........++.++ +++|+++++||+|.|
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~H~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~GH~H~~ 200 (200)
T PF00149_consen 121 GNNEYPDYGMEAQQEWWLWLLLLLEAKNDDPVIVFTHHPPYSSSSDSSSYGNESKGREALEELLKKYNVDLVLSGHTHRY 200 (200)
T ss_dssp HCCHTHHSEHHHHHHHHHHHHHHHHEEEESEEEEEESSSSSTTSSSTHHHSSEEEHHHHHHHHHHHTTCSEEEEESSSSE
T ss_pred ccccccccccccchhcccccccccccccccceeEEEecCCCCccccccccchhhccHHHHHHHHhhCCCCEEEeCceecC
Confidence 2211111112 233333333333334557899999999999876432210 0112223334444 579999999999976
No 14
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=99.48 E-value=1.9e-13 Score=146.52 Aligned_cols=166 Identities=21% Similarity=0.258 Sum_probs=101.7
Q ss_pred CCccEEEEcccccCCCCChhhhh-------cccccchhhhcCCCCCCcccccccCCCCCCCCCcccccCCCCcEEEeCCC
Q 002007 421 PRGDVLLIGGDLAYPNPSAFTYE-------RRLFRPFEYALQPPPWYKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGN 493 (983)
Q Consensus 421 PRgdfLVlgGDlvYP~gs~e~Y~-------~Rf~~Pye~Al~~~~~~~~~~~~~~~pelp~~~~~l~~~~gP~ifAIPGN 493 (983)
+++||+|++||++......+..+ ..+.+.++..+ +..++++++||
T Consensus 67 ~~~dfii~tGD~v~h~~~~~~~~~~~~~~~~~~~~~l~~~~----------------------------~~~pv~~~~GN 118 (296)
T cd00842 67 PKPDFILWTGDLVRHDVDEQTPETLVLISISNLTSLLKKAF----------------------------PDTPVYPALGN 118 (296)
T ss_pred CCCCEEEEcCCCCCCCchhhchhHHHHHHHHHHHHHHHHhC----------------------------CCCCEEEcCCC
Confidence 57799999999999875432222 22222232211 22349999999
Q ss_pred CCCCCC--------hhHHHHHhhc--cccC--CccccCCCcceEEEEcCCcEEEEEEecCCCC-----------CCCHHH
Q 002007 494 HDWFDG--------LNTFMRFICH--KSWL--GGWFMPQKKSYFALQLPKGWWVFGLDLALHC-----------DIDVYQ 550 (983)
Q Consensus 494 HDWyDG--------L~aF~r~F~~--r~~l--gGW~mpQ~~SYFAlrLp~~wWLlGLDtql~g-----------dID~~Q 550 (983)
||.+.. .+.+.+.+.. +.|+ .+..+-.+..||+..+..++++++|||+... .....|
T Consensus 119 HD~~p~~~~~~~~~~~~~~~~~~~~w~~~l~~~~~~~~~~ggYY~~~~~~~l~vI~Lnt~~~~~~~~~~~~~~~~~~~~Q 198 (296)
T cd00842 119 HDSYPVNQFPPNNSPSWLYDALAELWKSWLPEEAEETFKKGGYYSVPVKPGLRVISLNTNLYYKKNFWLLGSNETDPAGQ 198 (296)
T ss_pred CCCCcccccCCcccccHHHHHHHHHHHhhcCHHHHHHhhcceEEEEEcCCCeEEEEEeCccccccChhhhccCCCCHHHH
Confidence 998753 1111111100 0111 0111123457999987677999999997521 223689
Q ss_pred HHHHHHHHHhhcCCCCeEEEEecCCCCccccccCCcchhhHHHHHHhhhCCceeEEEcCccCCCc
Q 002007 551 FKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYM 615 (983)
Q Consensus 551 ~~wF~~ll~~~v~~~d~VIL~tHeP~w~~~~~~~~~~~~~l~~Lie~~L~~RV~L~LAGHiHhYq 615 (983)
++||+++|++..+.+.+|||++|+|.............+....+++++ +..|...|+||+|..+
T Consensus 199 l~WL~~~L~~a~~~~~~v~I~~HiPp~~~~~~~~~~~~~~~~~ii~~y-~~~i~~~~~GH~H~d~ 262 (296)
T cd00842 199 LQWLEDELQEAEQAGEKVWIIGHIPPGVNSYDTLENWSERYLQIINRY-SDTIAGQFFGHTHRDE 262 (296)
T ss_pred HHHHHHHHHHHHHCCCeEEEEeccCCCCcccccchHHHHHHHHHHHHH-HHhhheeeecccccce
Confidence 999999998644556899999999997654321101123344555655 3447899999999643
No 15
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=99.42 E-value=3.1e-12 Score=134.01 Aligned_cols=134 Identities=13% Similarity=0.068 Sum_probs=78.7
Q ss_pred CCcEEEeCCCCCCCC-ChhHHHHHhhccccCCccccCCCcceEEEEcCCcEEEEEEecCCC-----------------CC
Q 002007 484 GPQCYIIPGNHDWFD-GLNTFMRFICHKSWLGGWFMPQKKSYFALQLPKGWWVFGLDLALH-----------------CD 545 (983)
Q Consensus 484 gP~ifAIPGNHDWyD-GL~aF~r~F~~r~~lgGW~mpQ~~SYFAlrLp~~wWLlGLDtql~-----------------gd 545 (983)
.| +|+||||||+|. +.+.+.+.+.. .++....+ .++.++. +.|+|++.... +.
T Consensus 72 ~~-v~~V~GNHD~~~~~~~~~~~~l~~----~~~~~~~n---~~~~~~~-i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (232)
T cd07393 72 GT-KVLLKGNHDYWWGSASKLRKALEE----SRLALLFN---NAYIDDD-VAICGTRGWDNPGNPWPPINETLKVEEDEK 142 (232)
T ss_pred CC-eEEEeCCccccCCCHHHHHHHHHh----cCeEEecc---CcEEECC-EEEEEEEeeCCCCCccccccccccchhHHH
Confidence 45 899999999864 44444443321 22322212 2344554 89999874211 11
Q ss_pred CCHHHHHHHHHHHHhhcCC--CCeEEEEecCCCCccccccCCcchhhHHHHHHhhhCCceeEEEcCccCCCceeeecCCC
Q 002007 546 IDVYQFKFFAELVKEQVGE--RDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMRHSYVPSD 623 (983)
Q Consensus 546 ID~~Q~~wF~~ll~~~v~~--~d~VIL~tHeP~w~~~~~~~~~~~~~l~~Lie~~L~~RV~L~LAGHiHhYqR~~~~~~~ 623 (983)
+...|++|+++.+++..+. +.++|+++|+|.+..+. ..+.+...+++ .+++++++||+|++++..|-.+.
T Consensus 143 ~~~~~l~~l~~~L~~~~~~~~~~~~i~~~H~p~~~~~~-----~~~~~~~~~~~---~~v~~vl~GH~H~~~~~~~~~~~ 214 (232)
T cd07393 143 IFERELERLELSLKAAKKREKEKIKIVMLHYPPANENG-----DDSPISKLIEE---YGVDICVYGHLHGVGRDRAINGE 214 (232)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCcCCCC-----CHHHHHHHHHH---cCCCEEEECCCCCCcccccccce
Confidence 1245899999988642222 24699999999876542 11222233333 47999999999998886644321
Q ss_pred CCcccceEEEecC
Q 002007 624 GPVYVQHLLVNGC 636 (983)
Q Consensus 624 G~~~~~~lIVsGG 636 (983)
..+.+|.++..
T Consensus 215 --~~gi~~~~~~~ 225 (232)
T cd07393 215 --RGGIRYQLVSA 225 (232)
T ss_pred --ECCEEEEEEcc
Confidence 12335566554
No 16
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=99.30 E-value=4.4e-11 Score=124.42 Aligned_cols=178 Identities=23% Similarity=0.341 Sum_probs=106.5
Q ss_pred EEEEEecc--CC-CCCCchHHHHHhcccccccccCCCccccCCccEEEEcccccCCCCChhhhhcc--cccchhhhcCCC
Q 002007 383 WFDFMADT--GD-GGNSSYSVARLLAQPHIRVTRDDSVFTLPRGDVLLIGGDLAYPNPSAFTYERR--LFRPFEYALQPP 457 (983)
Q Consensus 383 wFd~VaDt--GD-G~dStYaVA~LmAqp~L~v~~~~~~~~lPRgdfLVlgGDlvYP~gs~e~Y~~R--f~~Pye~Al~~~ 457 (983)
.|..++|+ |. +.+++-.++.++++-. .+++|+||+.||++.. |...+|+.. |.+ ..
T Consensus 2 ~i~~isD~H~~~~~~~~~~~~~~~~~~i~-----------~~~~D~~v~tGDl~~~-~~~~~~~~~~~~l~----~~--- 62 (301)
T COG1409 2 RIAHISDLHLGALGVDSEELLEALLAAIE-----------QLKPDLLVVTGDLTND-GEPEEYRRLKELLA----RL--- 62 (301)
T ss_pred eEEEEecCcccccccchHHHHHHHHHHHh-----------cCCCCEEEEccCcCCC-CCHHHHHHHHHHHh----hc---
Confidence 46778888 32 3444444444444321 2456999999999987 666666542 212 00
Q ss_pred CCCcccccccCCCCCCCCCcccccCCCCcEEEeCCCCCCCCChhHHHHHhhccccCCccccCCCcceEEEEcC-CcEEEE
Q 002007 458 PWYKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFDGLNTFMRFICHKSWLGGWFMPQKKSYFALQLP-KGWWVF 536 (983)
Q Consensus 458 ~~~~~~~~~~~~pelp~~~~~l~~~~gP~ifAIPGNHDWyDGL~aF~r~F~~r~~lgGW~mpQ~~SYFAlrLp-~~wWLl 536 (983)
....| ++.+|||||-+..-...........+ .+..-... .+|+++
T Consensus 63 -----------------------~~~~~-~~~vpGNHD~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~ 108 (301)
T COG1409 63 -----------------------ELPAP-VIVVPGNHDARVVNGEAFSDQFFNRY----------AVLVGACSSGGWRVI 108 (301)
T ss_pred -----------------------cCCCc-eEeeCCCCcCCchHHHHhhhhhcccC----------cceEeeccCCceEEE
Confidence 11234 99999999987764433332221110 11111111 459999
Q ss_pred EEecCC----CCCCCHHHHHHHHHHHHhhcCCC--CeEEEEecCCCCccccccCCcchhhHHHHHHhhhCCc--eeEEEc
Q 002007 537 GLDLAL----HCDIDVYQFKFFAELVKEQVGER--DSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGR--CKLRIA 608 (983)
Q Consensus 537 GLDtql----~gdID~~Q~~wF~~ll~~~v~~~--d~VIL~tHeP~w~~~~~~~~~~~~~l~~Lie~~L~~R--V~L~LA 608 (983)
++|+.. .|.++..|++|+++.+++ .... +.+|++.|||..............+...+........ |+++|+
T Consensus 109 ~~d~~~~~~~~G~~~~~q~~~l~~~l~~-~~~~~~~~~v~~~hh~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~vl~ 187 (301)
T COG1409 109 GLDSSVPGVPLGRLGAEQLDWLEEALAA-APERAKDTVVVLHHHPLPSPGTGVDRVALRDAGELLDVLIAHGNDVRLVLS 187 (301)
T ss_pred EecCCCCCCCCCEECHHHHHHHHHHHHh-CccccCceEEEecCCCCCCCCCccceeeeecchhHHHHHHhcCCceEEEEe
Confidence 999975 467889999999999974 2222 3778889999887765544322222222222222234 999999
Q ss_pred CccCCC
Q 002007 609 GDMHHY 614 (983)
Q Consensus 609 GHiHhY 614 (983)
||+|--
T Consensus 188 GH~H~~ 193 (301)
T COG1409 188 GHIHLA 193 (301)
T ss_pred Cccccc
Confidence 999943
No 17
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site
Probab=99.28 E-value=5.1e-11 Score=127.73 Aligned_cols=118 Identities=16% Similarity=0.131 Sum_probs=76.9
Q ss_pred CcEEEeCCCCCCCCC-------hhHHHHHhhccccCCccccCCCcceEEEEcCCcEEEEEEecCCC-----CCCCHHHHH
Q 002007 485 PQCYIIPGNHDWFDG-------LNTFMRFICHKSWLGGWFMPQKKSYFALQLPKGWWVFGLDLALH-----CDIDVYQFK 552 (983)
Q Consensus 485 P~ifAIPGNHDWyDG-------L~aF~r~F~~r~~lgGW~mpQ~~SYFAlrLp~~wWLlGLDtql~-----gdID~~Q~~ 552 (983)
.+++.||||||..-+ .+.|.++|. ..++++..++ |.+++||+... +.+...|.+
T Consensus 85 ~pv~~VpGNHDig~~~~~~~~~~~rf~~~Fg-------------~~~~~~~~~~-~~fV~Lds~~l~~~~~~~~~~~~~~ 150 (257)
T cd08163 85 KMVESLPGNHDIGFGNGVVLPVRQRFEKYFG-------------PTSRVIDVGN-HTFVILDTISLSNKDDPDVYQPPRE 150 (257)
T ss_pred ceEEEeCCCcccCCCCCCCHHHHHHHHHHhC-------------CCceEEEECC-EEEEEEccccccCCcccccchhHHH
Confidence 349999999997322 223444442 1246777775 89999999742 235568999
Q ss_pred HHHHHHHhhcCCCCeEEEEecCCCCccccccCC--------------cchh-----hH-HHHHHhhhCCceeEEEcCccC
Q 002007 553 FFAELVKEQVGERDSVIIMTHEPNWLLDWYFNN--------------VSGK-----NV-KHLICDYLKGRCKLRIAGDMH 612 (983)
Q Consensus 553 wF~~ll~~~v~~~d~VIL~tHeP~w~~~~~~~~--------------~~~~-----~l-~~Lie~~L~~RV~L~LAGHiH 612 (983)
|+++.+++ .+++.++||++|+|.|-.....-+ ...+ +. ..+++. -+.+++||||+|
T Consensus 151 ~l~~~l~~-~~~~~p~ILl~H~Plyr~~~~~cg~~re~~~~~~~~~g~~yq~~l~~~~s~~il~~---~~P~~vfsGhdH 226 (257)
T cd08163 151 FLHSFSAM-KVKSKPRILLTHVPLYRPPNTSCGPLRESKTPLPYGYGYQYQNLLEPSLSEVILKA---VQPVIAFSGDDH 226 (257)
T ss_pred HHHhhhhc-cCCCCcEEEEeccccccCCCCCCCCccccCCCCCCCCCccceeecCHHHHHHHHHh---hCCcEEEecCCC
Confidence 99998753 456789999999999976431100 0011 11 123333 488999999999
Q ss_pred CCceeeec
Q 002007 613 HYMRHSYV 620 (983)
Q Consensus 613 hYqR~~~~ 620 (983)
+|=.+.-.
T Consensus 227 ~~C~~~h~ 234 (257)
T cd08163 227 DYCEVVHE 234 (257)
T ss_pred ccceeEcc
Confidence 98666533
No 18
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP
Probab=99.23 E-value=5.2e-11 Score=121.15 Aligned_cols=77 Identities=19% Similarity=0.061 Sum_probs=50.6
Q ss_pred CCCCCCHHHHHHHHHHHHhhc---CCCCeEEEEecCCCCccccccC----------C-c-chhhHHHHHHhhh-CCceeE
Q 002007 542 LHCDIDVYQFKFFAELVKEQV---GERDSVIIMTHEPNWLLDWYFN----------N-V-SGKNVKHLICDYL-KGRCKL 605 (983)
Q Consensus 542 l~gdID~~Q~~wF~~ll~~~v---~~~d~VIL~tHeP~w~~~~~~~----------~-~-~~~~l~~Lie~~L-~~RV~L 605 (983)
..+.++..|.+||++.+++.. +...+.+++.|||......... + . ...+...+++.+. ..+|++
T Consensus 88 ~~g~l~~~ql~wL~~~l~~~~~~~~~~~~~l~f~H~P~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~~~~~~~~v~~ 167 (199)
T cd07383 88 GYDWIRPSQIEWFKETSAALKKKYGKPIPSLAFFHIPLPEYREVWEGKGKVPGINNEKVCCPKINSGLFKALLERGDVKG 167 (199)
T ss_pred CCCCCCHHHHHHHHHHHHHHhhccCCCCcceEEEecChHHHHhhhcccCCCCccCCcccCCCcCCcHHHHHHHHcCCeEE
Confidence 456788999999999986421 3457999999999876532111 1 0 1122223344443 468999
Q ss_pred EEcCccCCCceee
Q 002007 606 RIAGDMHHYMRHS 618 (983)
Q Consensus 606 ~LAGHiHhYqR~~ 618 (983)
+++||+|.++...
T Consensus 168 v~~GH~H~~~~~~ 180 (199)
T cd07383 168 VFCGHDHGNDFCG 180 (199)
T ss_pred EEeCCCCCcceec
Confidence 9999999875443
No 19
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=99.22 E-value=1.5e-10 Score=114.08 Aligned_cols=110 Identities=18% Similarity=0.234 Sum_probs=66.2
Q ss_pred cEEEeCCCCCCCCChhHHHHHhhccccCCccccCCCcceEEEEcCCcEEEEEEecCC------CCCCCHHHHHHHHHHHH
Q 002007 486 QCYIIPGNHDWFDGLNTFMRFICHKSWLGGWFMPQKKSYFALQLPKGWWVFGLDLAL------HCDIDVYQFKFFAELVK 559 (983)
Q Consensus 486 ~ifAIPGNHDWyDGL~aF~r~F~~r~~lgGW~mpQ~~SYFAlrLp~~wWLlGLDtql------~gdID~~Q~~wF~~ll~ 559 (983)
++++||||||...-. ... . .++.....+ .+.++ +|.++|+|+.. .+.....|.+|+ +.+.
T Consensus 54 p~~~v~GNHD~~~~~----~~~-~----~~~~~~~~~---~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~l~~~-~~l~ 119 (188)
T cd07392 54 PVLAVPGNCDTPEIL----GLL-T----SAGLNLHGK---VVEVG-GYTFVGIGGSNPTPFNTPIELSEEEIVSD-GRLN 119 (188)
T ss_pred CEEEEcCCCCCHHHH----Hhh-h----cCcEecCCC---EEEEC-CEEEEEeCCCCCCCCCCccccCHHHHHHh-hhhh
Confidence 399999999964321 111 0 112222221 23345 49999998742 234567889998 3332
Q ss_pred hhcCCCCeEEEEecCCCCcc--ccccCC--cchhhHHHHHHhhhCCceeEEEcCccCCC
Q 002007 560 EQVGERDSVIIMTHEPNWLL--DWYFNN--VSGKNVKHLICDYLKGRCKLRIAGDMHHY 614 (983)
Q Consensus 560 ~~v~~~d~VIL~tHeP~w~~--~~~~~~--~~~~~l~~Lie~~L~~RV~L~LAGHiHhY 614 (983)
..+++.+|+++|+|++.. +..... ...+.+.+++++ .+++++|+||+|.-
T Consensus 120 --~~~~~~~ilv~H~pp~~~~~d~~~~~~~~g~~~l~~li~~---~~~~~~l~GH~H~~ 173 (188)
T cd07392 120 --NLLAKNLILVTHAPPYGTAVDRVSGGFHVGSKAIRKFIEE---RQPLLCICGHIHES 173 (188)
T ss_pred --ccCCCCeEEEECCCCcCCcccccCCCCccCCHHHHHHHHH---hCCcEEEEeccccc
Confidence 245689999999999752 211111 123445555555 48899999999974
No 20
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=99.16 E-value=8.7e-10 Score=118.39 Aligned_cols=164 Identities=16% Similarity=0.167 Sum_probs=91.8
Q ss_pred CCceEEEEEeccCCCCC-CchHHHHHhcccccccccCCCccccCCccEEEEcccccCCCCChhhhhcccccchhhhcCCC
Q 002007 379 KEDLWFDFMADTGDGGN-SSYSVARLLAQPHIRVTRDDSVFTLPRGDVLLIGGDLAYPNPSAFTYERRLFRPFEYALQPP 457 (983)
Q Consensus 379 d~~lwFd~VaDtGDG~d-StYaVA~LmAqp~L~v~~~~~~~~lPRgdfLVlgGDlvYP~gs~e~Y~~Rf~~Pye~Al~~~ 457 (983)
.+++.+.+++|+--|.. +.....+++.+-. ..++|+|+++||++..+. ..+.+ . +...+.
T Consensus 47 ~~~~rI~~lSDlH~~~~~~~~~l~~~v~~i~-----------~~~pDlVli~GD~~d~~~-~~~~~-~----~~~~L~-- 107 (271)
T PRK11340 47 AAPFKILFLADLHYSRFVPLSLISDAIALGI-----------EQKPDLILLGGDYVLFDM-PLNFS-A----FSDVLS-- 107 (271)
T ss_pred CCCcEEEEEcccCCCCcCCHHHHHHHHHHHH-----------hcCCCEEEEccCcCCCCc-cccHH-H----HHHHHH--
Confidence 35799999999965532 3222333332211 235699999999775221 11111 1 111111
Q ss_pred CCCcccccccCCCCCCCCCcccccCCCCcEEEeCCCCCCCCChh---HHHHHhhccccCCccccCCCcceEEEEcCC-cE
Q 002007 458 PWYKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFDGLN---TFMRFICHKSWLGGWFMPQKKSYFALQLPK-GW 533 (983)
Q Consensus 458 ~~~~~~~~~~~~pelp~~~~~l~~~~gP~ifAIPGNHDWyDGL~---aF~r~F~~r~~lgGW~mpQ~~SYFAlrLp~-~w 533 (983)
+++. ..| +|+++||||++.+.+ .+.+.+. ..|+..-++.+. .++.+. ..
T Consensus 108 --------------------~L~~-~~p-v~~V~GNHD~~~~~~~~~~~~~~l~----~~gi~lL~n~~~-~i~~~~~~i 160 (271)
T PRK11340 108 --------------------PLAE-CAP-TFACFGNHDRPVGTEKNHLIGETLK----SAGITVLFNQAT-VIATPNRQF 160 (271)
T ss_pred --------------------HHhh-cCC-EEEecCCCCcccCccchHHHHHHHH----hcCcEEeeCCeE-EEeeCCcEE
Confidence 0111 235 999999999875432 2222221 245655555444 444443 37
Q ss_pred EEEEEecCCCCCCCHHHHHHHHHHHHhhcCCCCeEEEEecCCCCccccccCCcchhhHHHHHHhhhCCceeEEEcCccCC
Q 002007 534 WVFGLDLALHCDIDVYQFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHH 613 (983)
Q Consensus 534 WLlGLDtql~gdID~~Q~~wF~~ll~~~v~~~d~VIL~tHeP~w~~~~~~~~~~~~~l~~Lie~~L~~RV~L~LAGHiHh 613 (983)
+|+|+|+-..+..+.+ +..++++..|+++|+|..... .-+.+++|.||||+|.
T Consensus 161 ~i~G~~d~~~~~~~~~----------~~~~~~~~~IlL~H~P~~~~~-----------------~~~~~~dL~lsGHTHG 213 (271)
T PRK11340 161 ELVGTGDLWAGQCKPP----------PASEANLPRLVLAHNPDSKEV-----------------MRDEPWDLMLCGHTHG 213 (271)
T ss_pred EEEEecchhccCCChh----------HhcCCCCCeEEEEcCCChhHh-----------------hccCCCCEEEeccccC
Confidence 8999986433222211 112346799999999986321 1134799999999997
Q ss_pred Cc
Q 002007 614 YM 615 (983)
Q Consensus 614 Yq 615 (983)
=|
T Consensus 214 GQ 215 (271)
T PRK11340 214 GQ 215 (271)
T ss_pred Ce
Confidence 33
No 21
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=99.09 E-value=1.5e-09 Score=110.93 Aligned_cols=197 Identities=19% Similarity=0.204 Sum_probs=109.0
Q ss_pred ceEEEEEeccCCCCCCc-hHHHHHhcccccccccCCCccccCCccEEEEcccccCCCCChhhhhcccccchhhhcCCCCC
Q 002007 381 DLWFDFMADTGDGGNSS-YSVARLLAQPHIRVTRDDSVFTLPRGDVLLIGGDLAYPNPSAFTYERRLFRPFEYALQPPPW 459 (983)
Q Consensus 381 ~lwFd~VaDtGDG~dSt-YaVA~LmAqp~L~v~~~~~~~~lPRgdfLVlgGDlvYP~gs~e~Y~~Rf~~Pye~Al~~~~~ 459 (983)
++.+.+++|+--+.... ....+++.+-. ..++|+++++||++....... ..+.+.++.
T Consensus 1 ~~~i~~~sDlH~~~~~~~~~~~~~~~~~~-----------~~~~d~vl~~GD~~~~~~~~~---~~~~~~l~~------- 59 (223)
T cd07385 1 GLRIAHLSDLHLGPFVSRERLERLVEKIN-----------ALKPDLVVLTGDLVDGSVDVL---ELLLELLKK------- 59 (223)
T ss_pred CCEEEEEeecCCCccCCHHHHHHHHHHHh-----------ccCCCEEEEcCcccCCcchhh---HHHHHHHhc-------
Confidence 36789999996443322 23344433211 124589999999988654332 112111211
Q ss_pred CcccccccCCCCCCCCCcccccCCCCcEEEeCCCCCCCCChhHH-HHHhhccccCCccccCCCcceEEEEcCC-cEEEEE
Q 002007 460 YKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFDGLNTF-MRFICHKSWLGGWFMPQKKSYFALQLPK-GWWVFG 537 (983)
Q Consensus 460 ~~~~~~~~~~pelp~~~~~l~~~~gP~ifAIPGNHDWyDGL~aF-~r~F~~r~~lgGW~mpQ~~SYFAlrLp~-~wWLlG 537 (983)
++ ...| +|+++||||++.+.... .+.+. ..|+..-.+. +..++... ...+.|
T Consensus 60 -------------------l~-~~~~-v~~v~GNHD~~~~~~~~~~~~l~----~~~v~~L~~~-~~~~~~~~~~i~i~G 113 (223)
T cd07385 60 -------------------LK-APLG-VYAVLGNHDYYSGDEENWIEALE----SAGITVLRNE-SVEISVGGATIGIAG 113 (223)
T ss_pred -------------------cC-CCCC-EEEECCCcccccCchHHHHHHHH----HcCCEEeecC-cEEeccCCeEEEEEe
Confidence 10 1234 99999999998875543 22221 1244433332 33455443 256777
Q ss_pred EecCCCCCCCHHHHHHHHHHHHhhcCCCCeEEEEecCCCCccccccCCcchhhHHHHHHhhhCCceeEEEcCccCCCcee
Q 002007 538 LDLALHCDIDVYQFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMRH 617 (983)
Q Consensus 538 LDtql~gdID~~Q~~wF~~ll~~~v~~~d~VIL~tHeP~w~~~~~~~~~~~~~l~~Lie~~L~~RV~L~LAGHiHhYqR~ 617 (983)
++.... +.+.+.+.++ +.++++..|+++|.|..... .-..++++++|||+|..|..
T Consensus 114 ~~~~~~------~~~~~~~~~~-~~~~~~~~I~l~H~P~~~~~-----------------~~~~~~dl~l~GHtHggqi~ 169 (223)
T cd07385 114 VDDGLG------RRPDLEKALK-GLDEDDPNILLAHQPDTAEE-----------------AAAWGVDLQLSGHTHGGQIR 169 (223)
T ss_pred ccCccc------cCCCHHHHHh-CCCCCCCEEEEecCCChhHH-----------------hcccCccEEEeccCCCCEEe
Confidence 654321 1234444443 35667899999999975322 11358999999999987755
Q ss_pred eecCC------------CCC--cccceEEEecCCCCCCCcCCcCC
Q 002007 618 SYVPS------------DGP--VYVQHLLVNGCGGAFLHPTHVFS 648 (983)
Q Consensus 618 ~~~~~------------~G~--~~~~~lIVsGGGGAfLhPTH~~~ 648 (983)
.+... +|- ....+++||-|-|...-|.|...
T Consensus 170 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~Vs~G~G~~~~~~R~~~ 214 (223)
T cd07385 170 LPGIGPLVLSKLARPYDYGLYRKGGSQLYVSRGLGTWGPPLRLGC 214 (223)
T ss_pred ccccccccchhhcCcccceEEEECCEEEEEcCCccCCCCchhcCC
Confidence 43321 111 11236677777776655655443
No 22
>TIGR03767 P_acnes_RR metallophosphoesterase, PPA1498 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149 but with long inserts separating some of the shared motifs such that the homology is apparent only through multiple sequence alignment. Members of this protein family, in general, have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. Members include YP_056203.1 from Propionibacterium acnes KPA171202.
Probab=99.08 E-value=5e-09 Score=120.95 Aligned_cols=126 Identities=12% Similarity=0.158 Sum_probs=84.7
Q ss_pred cceEEEE-cCCcEEEEEEecCC-----CCCCCHHHHHHHHHHHHhhcCCCCeEEEEecCCCCccccccCC-----cchhh
Q 002007 522 KSYFALQ-LPKGWWVFGLDLAL-----HCDIDVYQFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNN-----VSGKN 590 (983)
Q Consensus 522 ~SYFAlr-Lp~~wWLlGLDtql-----~gdID~~Q~~wF~~ll~~~v~~~d~VIL~tHeP~w~~~~~~~~-----~~~~~ 590 (983)
..||+++ .++ |.+|+||++. .+.++..|++||++.|++ .+++++||++|||.|..+....+ ....+
T Consensus 291 ~~YYSFd~~gg-vrfIvLDSt~~~G~~~G~L~eeQL~WLeqeLa~--a~~k~VVVf~HHPp~s~g~~~~Dp~~pg~~~~n 367 (496)
T TIGR03767 291 TGYYTFDIAGG-VRGISMDTTNRAGGDEGSLGQTQFKWIKDTLRA--SSDTLFVLFSHHTSWSMVNELTDPVDPGEKRHL 367 (496)
T ss_pred CceEEEEeECC-EEEEEEeCCCcCCCcCCccCHHHHHHHHHHHhc--CCCCCEEEEECCCCccccccccccccccccccC
Confidence 4599999 565 9999999975 357899999999999974 45678999999999875431111 11223
Q ss_pred HHHHHHhhhCC-ceeEEEcCccCCCc--eeeecCCCCCcccceEEEecCCCCCCCcCCcCCCc
Q 002007 591 VKHLICDYLKG-RCKLRIAGDMHHYM--RHSYVPSDGPVYVQHLLVNGCGGAFLHPTHVFSNF 650 (983)
Q Consensus 591 l~~Lie~~L~~-RV~L~LAGHiHhYq--R~~~~~~~G~~~~~~lIVsGGGGAfLhPTH~~~~~ 650 (983)
.+++++-+-++ +|.++||||+|.-. ++.+.++.+++.+-.-|++++-=-|-||-+.++-.
T Consensus 368 ~~eLldLL~~ypnV~aVfsGHvH~n~i~~~~~~~~~~p~~gfweI~TaSlvdfPq~~Ri~Ei~ 430 (496)
T TIGR03767 368 GTELVSLLLEHPNVLAWVNGHTHSNKITAHRRVEGVGKDKGFWEINTASHIDFPQQGRIIELA 430 (496)
T ss_pred HHHHHHHHhcCCCceEEEECCcCCCccccccCCCCCCCcCCeEEEeccccccCCCCceEEEEE
Confidence 33433333354 79999999999432 22222222233343558888877788887777653
No 23
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=99.03 E-value=1.4e-09 Score=114.12 Aligned_cols=62 Identities=18% Similarity=0.167 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEEEecCCCCcccc-------ccCC----cchhhHHHHHHhhhCCceeEEEcCccCCC
Q 002007 548 VYQFKFFAELVKEQVGERDSVIIMTHEPNWLLDW-------YFNN----VSGKNVKHLICDYLKGRCKLRIAGDMHHY 614 (983)
Q Consensus 548 ~~Q~~wF~~ll~~~v~~~d~VIL~tHeP~w~~~~-------~~~~----~~~~~l~~Lie~~L~~RV~L~LAGHiHhY 614 (983)
+.|++|+++.+++ .+++++||+||||+..... .++. .....+.+++++ ++++++|+||+|.-
T Consensus 149 ~~~l~~l~~~l~~--~~~~~~ivvtH~pP~~~~~~~~~~~~~~~~~~~~~~s~~l~~li~~---~~v~~~i~GH~H~~ 221 (239)
T TIGR03729 149 AIVLKQLKKQLNQ--LDNKQVIFVTHFVPHRDFIYVPMDHRRFDMFNAFLGSQHFGQLLVK---YEIKDVIFGHLHRR 221 (239)
T ss_pred HHHHHHHHHHHHh--cCCCCEEEEEcccchHHHhcCCCCCcchhhhhhccChHHHHHHHHH---hCCCEEEECCccCC
Confidence 5789999998864 3457899999998743210 0110 011334455555 48999999999964
No 24
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=98.99 E-value=1.4e-08 Score=107.60 Aligned_cols=174 Identities=14% Similarity=0.155 Sum_probs=99.3
Q ss_pred eEEEEEeccCCCCCCchHHHHHhcccccccccCCCccccCCccEEEEcccccCCCCChhhhhcccccchhhhcCCCCCCc
Q 002007 382 LWFDFMADTGDGGNSSYSVARLLAQPHIRVTRDDSVFTLPRGDVLLIGGDLAYPNPSAFTYERRLFRPFEYALQPPPWYK 461 (983)
Q Consensus 382 lwFd~VaDtGDG~dStYaVA~LmAqp~L~v~~~~~~~~lPRgdfLVlgGDlvYP~gs~e~Y~~Rf~~Pye~Al~~~~~~~ 461 (983)
..+..++|+=+ ...++.++++... ..++|++|++||++..++..++|.. +++...
T Consensus 5 ~kIl~iSDiHg---n~~~le~l~~~~~-----------~~~~D~vv~~GDl~~~g~~~~~~~~-~l~~l~---------- 59 (224)
T cd07388 5 RYVLATSNPKG---DLEALEKLVGLAP-----------ETGADAIVLIGNLLPKAAKSEDYAA-FFRILG---------- 59 (224)
T ss_pred eEEEEEEecCC---CHHHHHHHHHHHh-----------hcCCCEEEECCCCCCCCCCHHHHHH-HHHHHH----------
Confidence 45788999953 2223333333211 1246999999999998755555543 212121
Q ss_pred ccccccCCCCCCCCCcccccCCCCcEEEeCCCCCCCCChhHHHH-Hhhccc-cCCccccCCCcceEEEEcCCcEEEEEEe
Q 002007 462 KDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFDGLNTFMR-FICHKS-WLGGWFMPQKKSYFALQLPKGWWVFGLD 539 (983)
Q Consensus 462 ~~~~~~~~pelp~~~~~l~~~~gP~ifAIPGNHDWyDGL~aF~r-~F~~r~-~lgGW~mpQ~~SYFAlrLp~~wWLlGLD 539 (983)
....| +++||||||-- +..+++ .+-... .........+ ..++..+..|+|+|
T Consensus 60 -------------------~l~~p-v~~V~GNhD~~--v~~~l~~~~~~~~~~p~~~~lh~~----~~~~~g~~~~~GlG 113 (224)
T cd07388 60 -------------------EAHLP-TFYVPGPQDAP--LWEYLREAYNAELVHPEIRNVHET----FAFWRGPYLVAGVG 113 (224)
T ss_pred -------------------hcCCc-eEEEcCCCChH--HHHHHHHHhcccccCccceecCCC----eEEecCCeEEEEec
Confidence 11234 99999999952 434433 221000 0122333332 23343447899998
Q ss_pred cCCCC--CCCHHHH----HHHHH----HHHhhcCCCCeEEEEecCCCCccccccCCcchhhHHHHHHhhhCCceeEEEcC
Q 002007 540 LALHC--DIDVYQF----KFFAE----LVKEQVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAG 609 (983)
Q Consensus 540 tql~g--dID~~Q~----~wF~~----ll~~~v~~~d~VIL~tHeP~w~~~~~~~~~~~~~l~~Lie~~L~~RV~L~LAG 609 (983)
-.... ..++.|. +|+.+ .+.+ . ...+.||++|+|++-.+..| ...+.++.+++++ +.++.+||
T Consensus 114 Gs~~~~~e~sE~e~~~~~~~~~~~~l~~~~~-~-~~~~~VLv~H~PP~g~g~~h--~GS~alr~~I~~~---~P~l~i~G 186 (224)
T cd07388 114 GEIADEGEPEEHEALRYPAWVAEYRLKALWE-L-KDYRKVFLFHTPPYHKGLNE--QGSHEVAHLIKTH---NPLVVLVG 186 (224)
T ss_pred CCcCCCCCcCHHHHhhhhhhHHHHHHHHHHh-C-CCCCeEEEECCCCCCCCCCc--cCHHHHHHHHHHh---CCCEEEEc
Confidence 54322 3345552 44333 3322 2 45799999999999874322 2345577777775 89999999
Q ss_pred ccCC
Q 002007 610 DMHH 613 (983)
Q Consensus 610 HiHh 613 (983)
|+||
T Consensus 187 Hih~ 190 (224)
T cd07388 187 GKGQ 190 (224)
T ss_pred CCce
Confidence 9994
No 25
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=98.81 E-value=1.5e-08 Score=97.29 Aligned_cols=49 Identities=12% Similarity=-0.023 Sum_probs=31.0
Q ss_pred EEEecCCCCccccccCCcchhhHHHHHHhhhCCceeEEEcCccCCCceee
Q 002007 569 IIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMRHS 618 (983)
Q Consensus 569 IL~tHeP~w~~~~~~~~~~~~~l~~Lie~~L~~RV~L~LAGHiHhYqR~~ 618 (983)
|+++|||.+........... +.+.+.+-+-+.+++++++||+|......
T Consensus 81 iv~~Hhp~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~l~GH~H~~~~~~ 129 (144)
T cd07400 81 IVVLHHPLVPPPGSGRERLL-DAGDALKLLAEAGVDLVLHGHKHVPYVGN 129 (144)
T ss_pred EEEecCCCCCCCccccccCC-CHHHHHHHHHHcCCCEEEECCCCCcCeee
Confidence 99999999876532221111 23333333335699999999999865554
No 26
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t
Probab=98.78 E-value=3e-08 Score=97.90 Aligned_cols=52 Identities=19% Similarity=0.124 Sum_probs=31.4
Q ss_pred CeEEEEecCCCCccccccCCc-chhh--HHHHHHhhh-CCceeEEEcCccCCCcee
Q 002007 566 DSVIIMTHEPNWLLDWYFNNV-SGKN--VKHLICDYL-KGRCKLRIAGDMHHYMRH 617 (983)
Q Consensus 566 d~VIL~tHeP~w~~~~~~~~~-~~~~--l~~Lie~~L-~~RV~L~LAGHiHhYqR~ 617 (983)
+++||++|||+...+....+. ...+ ....+.+.+ +.+|+++++||+|.....
T Consensus 97 ~~~vv~~HhpP~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~i~GH~H~~~~~ 152 (166)
T cd07404 97 GKTVVVTHHAPSPLSLAPQYGDSLVNAAFAVDLDDLILADPIDLWIHGHTHFNFDY 152 (166)
T ss_pred CCEEEEeCCCCCccccCccccCCCcchhhhhccHhHHhhcCCCEEEECCccccceE
Confidence 699999999998764322111 1111 111123333 468999999999975433
No 27
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=98.71 E-value=5.6e-08 Score=98.59 Aligned_cols=123 Identities=15% Similarity=0.089 Sum_probs=65.0
Q ss_pred CcEEEeCCCCCCCCChhHHHHHhhccccCCccccC----CCcceEEEEcC-CcEEEEEEecCCCCCCCHHHHHHHHHHHH
Q 002007 485 PQCYIIPGNHDWFDGLNTFMRFICHKSWLGGWFMP----QKKSYFALQLP-KGWWVFGLDLALHCDIDVYQFKFFAELVK 559 (983)
Q Consensus 485 P~ifAIPGNHDWyDGL~aF~r~F~~r~~lgGW~mp----Q~~SYFAlrLp-~~wWLlGLDtql~gdID~~Q~~wF~~ll~ 559 (983)
.++++++||||.+.+........ ...++... ..........+ .+..|+|++....... ..+.+..++...
T Consensus 77 ~~v~~~~GNHD~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~g~~~~~~~~~-~~~~~~~~~~~~ 151 (223)
T cd00840 77 IPVFIIAGNHDSPSRLGALSPLL----ALSGLHLVGVEEDVLTPLLLPKGGTGVAIYGLPYLRRSRL-RDLLADAELRPR 151 (223)
T ss_pred CCEEEecCCCCCccccccccchH----hhCcEEEEcccCcceeEEEeccCCeEEEEEECCCCCHHHH-HHHHHHHHHHhh
Confidence 34999999999987754433221 11122211 11112233333 3478888875432211 122233233332
Q ss_pred hhcCCCCeEEEEecCCCCccccccCCcchhhHHHHHHhhhCCceeEEEcCccCCCcee
Q 002007 560 EQVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMRH 617 (983)
Q Consensus 560 ~~v~~~d~VIL~tHeP~w~~~~~~~~~~~~~l~~Lie~~L~~RV~L~LAGHiHhYqR~ 617 (983)
+..+++..|+++|+|.......... . ....++.+...+++++++||+|..+..
T Consensus 152 -~~~~~~~~Il~~H~~~~~~~~~~~~--~--~~~~~~~~~~~~~d~v~~GH~H~~~~~ 204 (223)
T cd00840 152 -PLDPDDFNILLLHGGVAGAGPSDSE--R--APFVPEALLPAGFDYVALGHIHRPQII 204 (223)
T ss_pred -ccCCCCcEEEEEeeeeecCCCCccc--c--cccCcHhhcCcCCCEEECCCcccCeee
Confidence 3466789999999997544311110 0 111223333568999999999986544
No 28
>TIGR03768 RPA4764 metallophosphoesterase, RPA4764 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149. Members of this protein family usually have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. This model and TIGR03767 divide a narrow clade of pfam00149-related enzymes.
Probab=98.68 E-value=3.1e-07 Score=105.83 Aligned_cols=88 Identities=19% Similarity=0.131 Sum_probs=56.1
Q ss_pred eEEEEcCCcE--EEEEEecCC-----------CCCCCHHHHHHHHHHHHhhcC-CCCeEEEEecCCCCcc-cccc---C-
Q 002007 524 YFALQLPKGW--WVFGLDLAL-----------HCDIDVYQFKFFAELVKEQVG-ERDSVIIMTHEPNWLL-DWYF---N- 584 (983)
Q Consensus 524 YFAlrLp~~w--WLlGLDtql-----------~gdID~~Q~~wF~~ll~~~v~-~~d~VIL~tHeP~w~~-~~~~---~- 584 (983)
||+++.-.+| .+|+||+-. ++.+|.+|++||++.|++ .+ .+..||++.|+|..+. .... .
T Consensus 294 yYsFd~~g~vplrvIvLDSt~~~~~~s~pG~~~G~Ld~eQLaWLe~~La~-a~a~~p~VVV~hHpPi~t~gi~~md~w~~ 372 (492)
T TIGR03768 294 CYSFVPKSDVPLKVIVLDDTQSEHDGSHDIHGHGSLDAKRWDWLKAELAR-GQADGQLMIIAAHIPIAVSPIGSEMEWWL 372 (492)
T ss_pred eeEEecCCCcceEEEEECCCccccccCCCCCcceeeCHHHHHHHHHHHHh-CcCCCceEEEEeCCCcccCCccchhhhcc
Confidence 8999954335 999999763 345899999999999974 44 4456777888887752 1111 0
Q ss_pred -----CcchhhHH--HHHHhhh-C-CceeEEEcCccC
Q 002007 585 -----NVSGKNVK--HLICDYL-K-GRCKLRIAGDMH 612 (983)
Q Consensus 585 -----~~~~~~l~--~Lie~~L-~-~RV~L~LAGHiH 612 (983)
.+..++.. ..+.++| + .+|.++||||+|
T Consensus 373 ~~~~~~~~L~n~~~~~eLlaLL~~hPnVla~LsGHvH 409 (492)
T TIGR03768 373 GAADANPDLQNAVSLTGLVTTLQKYPNLLMWIAGHRH 409 (492)
T ss_pred ccccccccccccccHHHHHHHHhcCCCeEEEEcCCcc
Confidence 00011111 1123333 2 479999999999
No 29
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain. Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me
Probab=98.65 E-value=1.3e-07 Score=85.51 Aligned_cols=50 Identities=22% Similarity=0.242 Sum_probs=33.0
Q ss_pred EEEecCCCCccccccCCcchhhHHHHHHhhh-CCceeEEEcCccCCCceeee
Q 002007 569 IIMTHEPNWLLDWYFNNVSGKNVKHLICDYL-KGRCKLRIAGDMHHYMRHSY 619 (983)
Q Consensus 569 IL~tHeP~w~~~~~~~~~~~~~l~~Lie~~L-~~RV~L~LAGHiHhYqR~~~ 619 (983)
|+++|.|.+.......... ......+.+.+ ..++++.++||+|.++++..
T Consensus 70 i~~~H~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~GH~H~~~~~~~ 120 (131)
T cd00838 70 ILLTHGPPYDPLDELSPDE-DPGSEALLELLEKYGVDLVLSGHTHVYERREP 120 (131)
T ss_pred EEEeccCCCCCchhhcccc-hhhHHHHHHHHHHhCCCEEEeCCeeccccccC
Confidence 9999999988765332211 11122222332 56899999999999988763
No 30
>COG1408 Predicted phosphohydrolases [General function prediction only]
Probab=98.54 E-value=4.7e-07 Score=99.14 Aligned_cols=208 Identities=17% Similarity=0.155 Sum_probs=106.0
Q ss_pred CCCCceEEEEEeccC-CCCCCchHHHHHhcccccccccCCCccccCCccEEEEcccccCC-C-CChhhhhcccccchhhh
Q 002007 377 SEKEDLWFDFMADTG-DGGNSSYSVARLLAQPHIRVTRDDSVFTLPRGDVLLIGGDLAYP-N-PSAFTYERRLFRPFEYA 453 (983)
Q Consensus 377 ~~d~~lwFd~VaDtG-DG~dStYaVA~LmAqp~L~v~~~~~~~~lPRgdfLVlgGDlvYP-~-gs~e~Y~~Rf~~Pye~A 453 (983)
....++.+..++|+= ..+. ....+.+.+-.+ ..| |+++++||++.- . ...+.... ..++.+
T Consensus 40 ~~~~~~~iv~lSDlH~~~~~-~~~~~~~~~i~~----------~~~--DlivltGD~~~~~~~~~~~~~~~-~L~~L~-- 103 (284)
T COG1408 40 ASLQGLKIVQLSDLHSLPFR-EEKLALLIAIAN----------ELP--DLIVLTGDYVDGDRPPGVAALAL-FLAKLK-- 103 (284)
T ss_pred cccCCeEEEEeehhhhchhh-HHHHHHHHHHHh----------cCC--CEEEEEeeeecCCCCCCHHHHHH-HHHhhh--
Confidence 346788899999993 2222 222333333221 134 999999997764 1 11111111 111111
Q ss_pred cCCCCCCcccccccCCCCCCCCCcccccCCCCcEEEeCCCCCCCCChhHH-HHHhhccc--c--CCccccCCCcc-eEEE
Q 002007 454 LQPPPWYKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFDGLNTF-MRFICHKS--W--LGGWFMPQKKS-YFAL 527 (983)
Q Consensus 454 l~~~~~~~~~~~~~~~pelp~~~~~l~~~~gP~ifAIPGNHDWyDGL~aF-~r~F~~r~--~--lgGW~mpQ~~S-YFAl 527 (983)
....+|||.|||||+...... ...+.... . -.+....+..+ ++..
T Consensus 104 -----------------------------~~~gv~av~GNHd~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (284)
T COG1408 104 -----------------------------APLGVFAVLGNHDYGVDRSNVYIGDLLEELGRVVLRNEIAVIDLLALRIEV 154 (284)
T ss_pred -----------------------------ccCCEEEEecccccccccccchhhhhhhhcceeeecccchhcccccccccc
Confidence 112399999999999886553 22222111 0 00011111110 1011
Q ss_pred EcCCcEEEEEEecCCCCCCCHHHHHH---HHHHHHhhcCCCCeEEEEecCCCCccccccCCcchhhHHHHHHhhhCCcee
Q 002007 528 QLPKGWWVFGLDLALHCDIDVYQFKF---FAELVKEQVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCK 604 (983)
Q Consensus 528 rLp~~wWLlGLDtql~gdID~~Q~~w---F~~ll~~~v~~~d~VIL~tHeP~w~~~~~~~~~~~~~l~~Lie~~L~~RV~ 604 (983)
....-|..++|.+..... ..+.++ .++.+ .+.+++...|+++|+|..... +-.+.++
T Consensus 155 -~~~~~~~~~~~d~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~IlL~H~P~~~~~-----------------~~~~~~d 214 (284)
T COG1408 155 -GGLDLYLAGVEDILAGLP-LAPFTIGLDIAEAL-KQLDEDLPGILLSHEPDIILQ-----------------LRLYGVD 214 (284)
T ss_pred -cccccccccCchHHhhCc-ccccccccchhhhh-ccccccccceEeccCCceehh-----------------hccCcce
Confidence 111245666665543332 000000 22222 346778899999999986543 1124799
Q ss_pred EEEcCccCCCceeeecC-------C-----CCC--cccceEEEecCCCCCCCcCCcCCC
Q 002007 605 LRIAGDMHHYMRHSYVP-------S-----DGP--VYVQHLLVNGCGGAFLHPTHVFSN 649 (983)
Q Consensus 605 L~LAGHiHhYqR~~~~~-------~-----~G~--~~~~~lIVsGGGGAfLhPTH~~~~ 649 (983)
|+||||+|.=|-..|.. . .|. +.+.+++||.|-|..--|.|...+
T Consensus 215 LvLSGHTHGGQi~~p~~~~l~~~~~~~~~~~g~~~~~~~~lyVSrGlG~~~~p~R~~~~ 273 (284)
T COG1408 215 LVLSGHTHGGQIRLPLWGPLVTNALSGRYRAGGLRQFGAQLYVSRGLGTTGPPIRLGCP 273 (284)
T ss_pred EEEeccccCCeEEeecccccccccccccccccceecCCceEEEeCCcCCCCCCcccCCC
Confidence 99999999733332211 0 111 112268999999987666666543
No 31
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=98.37 E-value=1.3e-06 Score=83.96 Aligned_cols=47 Identities=23% Similarity=0.277 Sum_probs=31.0
Q ss_pred CCeEEEEecCCCCccccccCC---cchhhHHHHHHhhhCCceeEEEcCccCCC
Q 002007 565 RDSVIIMTHEPNWLLDWYFNN---VSGKNVKHLICDYLKGRCKLRIAGDMHHY 614 (983)
Q Consensus 565 ~d~VIL~tHeP~w~~~~~~~~---~~~~~l~~Lie~~L~~RV~L~LAGHiHhY 614 (983)
++..|+++|.|.+....+... ...+.+.+++++ .++++.++||+|..
T Consensus 67 ~~~~ilv~H~~p~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~i~GH~H~~ 116 (135)
T cd07379 67 EDTDILVTHGPPYGHLDLVSSGQRVGCEELLNRVQR---VRPKLHVFGHIHEG 116 (135)
T ss_pred CCCEEEEECCCCCcCccccccCcccCCHHHHHHHHH---HCCcEEEEcCcCCc
Confidence 467899999999875433211 112334444444 47899999999975
No 32
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=98.04 E-value=1.6e-05 Score=80.77 Aligned_cols=35 Identities=23% Similarity=0.258 Sum_probs=26.4
Q ss_pred EEEecCCCCccccccCCcchhhHHHHHHhhhCCceeEEEcCccCCCceeeecC
Q 002007 569 IIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMRHSYVP 621 (983)
Q Consensus 569 IL~tHeP~w~~~~~~~~~~~~~l~~Lie~~L~~RV~L~LAGHiHhYqR~~~~~ 621 (983)
|+++|+|.+. ++. +.+++++||||+|.+.+.....
T Consensus 119 i~l~H~p~~~---------------~~~---~~~~~~~lsGH~H~~~~~~~~~ 153 (171)
T cd07384 119 ILLTHIPLYR---------------LLD---TIKPVLILSGHDHDQCEVVHSS 153 (171)
T ss_pred eeEECCccHH---------------HHh---ccCceEEEeCcccCCeEEEecC
Confidence 9999999853 112 2478999999999987776553
No 33
>PF09423 PhoD: PhoD-like phosphatase; InterPro: IPR018946 This entry contains a number of putative proteins as well as Alkaline phosphatase D which catalyses the reaction: A phosphate monoester + H(2)O = an alcohol + phosphate ; PDB: 2YEQ_B.
Probab=98.01 E-value=7.1e-05 Score=86.11 Aligned_cols=91 Identities=13% Similarity=0.141 Sum_probs=47.1
Q ss_pred CcceEEEEcCCcEEEEEEecCCCCC---------------------CCHHHHHHHHHHHHhhcCCCCeEEEEecCCCCcc
Q 002007 521 KKSYFALQLPKGWWVFGLDLALHCD---------------------IDVYQFKFFAELVKEQVGERDSVIIMTHEPNWLL 579 (983)
Q Consensus 521 ~~SYFAlrLp~~wWLlGLDtql~gd---------------------ID~~Q~~wF~~ll~~~v~~~d~VIL~tHeP~w~~ 579 (983)
.+.|+.++.++..-|+.||+-..-+ +..+|++||++.+++ ....++|+++.-|.-..
T Consensus 252 ~~~y~~~~~G~~~~~~~LD~R~~R~~~~~~~~~~~~~~~~~~~~~mLG~~Q~~wL~~~L~~--s~a~~kvi~s~v~~~~~ 329 (453)
T PF09423_consen 252 GRIYRSFRYGDLVEFFMLDTRSYRSPPPCDGPGDTCPAADDPSRTMLGEEQWDWLEDWLAS--SQATWKVIGSSVPFSPL 329 (453)
T ss_dssp ----EEEEETTTEEEEE--SSSS----CCCSSEE--HHHH-TT--SS-HHHHHHHHHHHHH----SSEEEEE-SS--S--
T ss_pred CceEEEEecCCceeEEEEechhccccccccccccccccccCCccCcCCHHHHHHHHHHHhc--CCCcEEEEEeCCceecc
Confidence 3469999999878899999964211 346899999998875 33679999887764222
Q ss_pred ccc------------cCCcchhhHHHHHHhhhCCce--eEEEcCccCCC
Q 002007 580 DWY------------FNNVSGKNVKHLICDYLKGRC--KLRIAGDMHHY 614 (983)
Q Consensus 580 ~~~------------~~~~~~~~l~~Lie~~L~~RV--~L~LAGHiHhY 614 (983)
... +++. ....+.|++.+-..++ -++||||+|.-
T Consensus 330 ~~~~~~~~~~~~~d~W~g~-~~er~~Ll~~l~~~~~~~vV~LSGDvH~~ 377 (453)
T PF09423_consen 330 NFPDAAEGLPFNMDSWDGY-PAERQRLLDFLRESGIRNVVFLSGDVHAS 377 (453)
T ss_dssp -SS-SS-S--EETTSGGGS-HHHHHHHHHHHHHTT---EEEEE-SSSSE
T ss_pred cccccccccccCCCchhhC-HHHHHHHHHHHHhhCCCCEEEEecCcchh
Confidence 111 1111 1112233333322344 48999999963
No 34
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=98.01 E-value=1.9e-05 Score=82.74 Aligned_cols=42 Identities=21% Similarity=0.256 Sum_probs=30.1
Q ss_pred EEEecCCCCccccccCCcchhhHHHHHHhhhCCceeEEEcCccCCCceeeec
Q 002007 569 IIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMRHSYV 620 (983)
Q Consensus 569 IL~tHeP~w~~~~~~~~~~~~~l~~Lie~~L~~RV~L~LAGHiHhYqR~~~~ 620 (983)
|+++|-|.+..+. .-..+.+.+ .++++.+|||.|.+..++..
T Consensus 112 i~lsH~P~~~~~~-------~~~~~~~~~---~~p~~Ifs~H~H~s~~~~~~ 153 (195)
T cd08166 112 IMLSHVPLLAEGG-------QALKHVVTD---LDPDLIFSAHRHKSSIFMYD 153 (195)
T ss_pred eeeeccccccccc-------HHHHHHHHh---cCceEEEEcCccceeeEEee
Confidence 9999999987542 112223333 48999999999998887644
No 35
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=97.82 E-value=0.00022 Score=76.83 Aligned_cols=58 Identities=19% Similarity=0.218 Sum_probs=36.5
Q ss_pred hcCCCCeEEEEecCCCCccccccCC-----------cch-hhHHHHHHhhh-CCceeEEEcCccCCCceee
Q 002007 561 QVGERDSVIIMTHEPNWLLDWYFNN-----------VSG-KNVKHLICDYL-KGRCKLRIAGDMHHYMRHS 618 (983)
Q Consensus 561 ~v~~~d~VIL~tHeP~w~~~~~~~~-----------~~~-~~l~~Lie~~L-~~RV~L~LAGHiHhYqR~~ 618 (983)
.+.++++.|+++|.|..-.+...++ .-+ ..+...+.++- +.+++|++.||+||=-|+.
T Consensus 142 ~~~~~~~~VliaH~~~~G~g~~~~~~cg~d~~~~~~~~G~~~l~~ai~~~~~~~~~~l~~fGH~H~~l~~~ 212 (238)
T cd07397 142 KAPPDLPLILLAHNGPSGLGSDAEDPCGRDWKPPGGDWGDPDLALAISQIQQGRQVPLVVFGHMHHRLRRG 212 (238)
T ss_pred hcCCCCCeEEEeCcCCcCCCcccccccccccCCcCCCCCCHHHHHHHHHHhccCCCCEEEeCCccCccccc
Confidence 4577889999999998655421111 112 23333344432 4568999999999965654
No 36
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=97.63 E-value=0.0001 Score=77.17 Aligned_cols=32 Identities=28% Similarity=0.413 Sum_probs=24.2
Q ss_pred EEEecCCCCccccccCCcchhhHHHHHHhhhCCceeEEEcCccCCCceee
Q 002007 569 IIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMRHS 618 (983)
Q Consensus 569 IL~tHeP~w~~~~~~~~~~~~~l~~Lie~~L~~RV~L~LAGHiHhYqR~~ 618 (983)
|+++|+|.+... .+.+++++||||+|.=+++.
T Consensus 129 ilL~H~P~~~~~------------------~~~~~dl~lSGHtHgGqi~~ 160 (193)
T cd08164 129 ILLTHVPLYKIF------------------LEGKPGLILTGHDHEGCDYQ 160 (193)
T ss_pred EEEEcccceecc------------------ccCCCCEEEeCccCCCeEEE
Confidence 999999987611 02478999999999866554
No 37
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=97.62 E-value=0.00015 Score=72.69 Aligned_cols=34 Identities=21% Similarity=0.330 Sum_probs=23.8
Q ss_pred EEEecCCCCccccccCCcchhhHHHHHHhhhCCceeEEEcCccCCCceeeec
Q 002007 569 IIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMRHSYV 620 (983)
Q Consensus 569 IL~tHeP~w~~~~~~~~~~~~~l~~Lie~~L~~RV~L~LAGHiHhYqR~~~~ 620 (983)
|++.|+|... .+.+ .++++.||||+|...+....
T Consensus 107 ~~l~H~p~~~---------------~~~~---~~~~~~l~GH~H~~~~~~~~ 140 (156)
T cd08165 107 ILLQHFPLYR---------------LLQW---LKPRLVLSGHTHSFCEVTHP 140 (156)
T ss_pred eeeeCChHHH---------------HHHh---hCCCEEEEcccCCCceeEEE
Confidence 8999999732 1122 36779999999996666543
No 38
>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain. This family includes the bacterial enzyme UshA, and related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich
Probab=97.56 E-value=0.0028 Score=66.87 Aligned_cols=116 Identities=17% Similarity=0.159 Sum_probs=61.4
Q ss_pred EEEeCCCCCCCCChhHHHHHhhccc--cCC-ccc-------cCCCcceEEEEcCC-cEEEEEEecCCCCCC---------
Q 002007 487 CYIIPGNHDWFDGLNTFMRFICHKS--WLG-GWF-------MPQKKSYFALQLPK-GWWVFGLDLALHCDI--------- 546 (983)
Q Consensus 487 ifAIPGNHDWyDGL~aF~r~F~~r~--~lg-GW~-------mpQ~~SYFAlrLp~-~wWLlGLDtql~gdI--------- 546 (983)
-++++||||+.-|.+.+...+-+-. +++ +.. .+.-..|-.++... ..-++|+.+......
T Consensus 72 d~~~~GNHe~d~g~~~l~~~~~~~~~~~l~aNv~~~~~~~~~~~~~~~~i~~~~g~kIgiiG~~~~~~~~~~~~~~~~~~ 151 (252)
T cd00845 72 DAVTIGNHEFDYGLDALAELYKDANFPVLSANLYDKDTGTGPPWAKPYKIIEVDGVKIGVIGLTTPDTPTYTPLGWIIGL 151 (252)
T ss_pred CEEeeccccccccHHHHHHHHHhCCCCEEEEeeeccCCCCCCCCcCCeEEEEECCEEEEEEEeccccceeecCCCcccCc
Confidence 3456799998777776665543211 111 110 01112354555542 256777765432111
Q ss_pred C-HHHHHHHHHHHHhhcCCCCeEEEEecCCCCccccccCCcchhhHHHHHHhhhCCceeEEEcCccCCCce
Q 002007 547 D-VYQFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMR 616 (983)
Q Consensus 547 D-~~Q~~wF~~ll~~~v~~~d~VIL~tHeP~w~~~~~~~~~~~~~l~~Lie~~L~~RV~L~LAGHiHhYqR 616 (983)
+ ....+-+++..++..++.|-||+++|-|.-. ..++.++. ..++++|+||.|..+.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~D~vIvl~H~g~~~------------~~~la~~~--~giDlvlggH~H~~~~ 208 (252)
T cd00845 152 PFEDLAEAVAVAEELLAEGADVIILLSHLGLDD------------DEELAEEV--PGIDVILGGHTHHLLE 208 (252)
T ss_pred eecCHHHHHHHHHHHHhCCCCEEEEEeccCccc------------hHHHHhcC--CCccEEEcCCcCcccC
Confidence 0 1112223322223345678999999988642 11222332 5799999999998654
No 39
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=97.52 E-value=0.0026 Score=68.26 Aligned_cols=176 Identities=22% Similarity=0.299 Sum_probs=93.0
Q ss_pred ceEEEEEeccCCCCCCchHHHHHhcccccccccCCCccccCCccEEEEcccccCCC--CChhhhhcccccchhhhcCCCC
Q 002007 381 DLWFDFMADTGDGGNSSYSVARLLAQPHIRVTRDDSVFTLPRGDVLLIGGDLAYPN--PSAFTYERRLFRPFEYALQPPP 458 (983)
Q Consensus 381 ~lwFd~VaDtGDG~dStYaVA~LmAqp~L~v~~~~~~~~lPRgdfLVlgGDlvYP~--gs~e~Y~~Rf~~Pye~Al~~~~ 458 (983)
.+-+.+++|+=...++.-++....+.. ++|+|+++||++|-. +....-+.. . .++
T Consensus 3 ~mkil~vtDlHg~~~~~~k~~~~~~~~--------------~~D~lviaGDlt~~~~~~~~~~~~~~--~-~e~------ 59 (226)
T COG2129 3 KMKILAVTDLHGSEDSLKKLLNAAADI--------------RADLLVIAGDLTYFHFGPKEVAEELN--K-LEA------ 59 (226)
T ss_pred cceEEEEeccccchHHHHHHHHHHhhc--------------cCCEEEEecceehhhcCchHHHHhhh--H-HHH------
Confidence 456788999965555444544433321 469999999999432 222111111 0 222
Q ss_pred CCcccccccCCCCCCCCCcccccCCCCcEEEeCCCCCCCCChhHHHHHhhccccCCccccCCCcceEEEEcCCcEEEEEE
Q 002007 459 WYKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFDGLNTFMRFICHKSWLGGWFMPQKKSYFALQLPKGWWVFGL 538 (983)
Q Consensus 459 ~~~~~~~~~~~pelp~~~~~l~~~~gP~ifAIPGNHDWyDGL~aF~r~F~~r~~lgGW~mpQ~~SYFAlrLp~~wWLlGL 538 (983)
++....| ++|+|||=|- ..-.+.+.. .|-.+..+ .+++.. .-+.|+
T Consensus 60 --------------------l~~~~~~-v~avpGNcD~----~~v~~~l~~----~~~~v~~~----v~~i~~-~~~~G~ 105 (226)
T COG2129 60 --------------------LKELGIP-VLAVPGNCDP----PEVIDVLKN----AGVNVHGR----VVEIGG-YGFVGF 105 (226)
T ss_pred --------------------HHhcCCe-EEEEcCCCCh----HHHHHHHHh----cccccccc----eEEecC-cEEEEe
Confidence 1222334 9999999663 111122111 12222222 455554 334553
Q ss_pred -ecCCCC-----CC-CHHHHHHHHHHHHhhcCCCCeEEEEecCCCCcccccc-C---CcchhhHHHHHHhhhCCceeEEE
Q 002007 539 -DLALHC-----DI-DVYQFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYF-N---NVSGKNVKHLICDYLKGRCKLRI 607 (983)
Q Consensus 539 -Dtql~g-----dI-D~~Q~~wF~~ll~~~v~~~d~VIL~tHeP~w~~~~~~-~---~~~~~~l~~Lie~~L~~RV~L~L 607 (983)
.++... .. ++.=+..+.+.++...+ ...|+++|.|+|.-..-. . +.....++.+++++ ++.+.+
T Consensus 106 Ggsn~tp~nt~~e~~E~~I~s~l~~~v~~~~~--~~~Il~~HaPP~gt~~d~~~g~~hvGS~~vr~~ieef---qP~l~i 180 (226)
T COG2129 106 GGSNPTPFNTPREFSEDEIYSKLKSLVKKADN--PVNILLTHAPPYGTLLDTPSGYVHVGSKAVRKLIEEF---QPLLGL 180 (226)
T ss_pred cccCCCCCCCccccCHHHHHHHHHHHHhcccC--cceEEEecCCCCCccccCCCCccccchHHHHHHHHHh---CCceEE
Confidence 222211 12 22335566666653111 122999999999753221 1 11235677888887 889999
Q ss_pred cCccCCCceee
Q 002007 608 AGDMHHYMRHS 618 (983)
Q Consensus 608 AGHiHhYqR~~ 618 (983)
+||+|-++-..
T Consensus 181 ~GHIHEs~G~d 191 (226)
T COG2129 181 HGHIHESRGID 191 (226)
T ss_pred Eeeeccccccc
Confidence 99999754443
No 40
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=97.51 E-value=0.0026 Score=68.41 Aligned_cols=132 Identities=18% Similarity=0.140 Sum_probs=69.6
Q ss_pred EEEeCCCCCCCCChhHHHHHhhcc--ccCC-cc------c-cCCCcceEEEEcCC-cEEEEEEecCCCC--------C--
Q 002007 487 CYIIPGNHDWFDGLNTFMRFICHK--SWLG-GW------F-MPQKKSYFALQLPK-GWWVFGLDLALHC--------D-- 545 (983)
Q Consensus 487 ifAIPGNHDWyDGL~aF~r~F~~r--~~lg-GW------~-mpQ~~SYFAlrLp~-~wWLlGLDtql~g--------d-- 545 (983)
-++++||||+.-|.+.+.+.+.+- .+++ .. . .++-.+|..++... ..=++|+.+.... .
T Consensus 73 d~~~~GNHefd~g~~~l~~~~~~~~~~~L~aNi~~~~~~~~~~~~~~~~i~~~~g~kIgviG~~~~~~~~~~~~~~~~~~ 152 (257)
T cd07406 73 DLACFGNHEFDFGEDQLQKRLGESKFPWLSSNVFDATGGGPLPNGKESAIIERAGVKIGLLGLVEEEWLETLTIDPEYVR 152 (257)
T ss_pred cEEeecccccccCHHHHHHHHhhCCCCEEEEEEEECCCCcccCCCCCeEEEEECCeEEEEEEEecccccccccCCCCcce
Confidence 466899999977888777765322 1211 00 1 11223576777653 1345666554211 0
Q ss_pred -CCHH--HHHHHHHHHHhhcCCCCeEEEEecCCCCccccccCCcchhhHHHHHHhhhCCceeEEEcCccCCCceeeecCC
Q 002007 546 -IDVY--QFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMRHSYVPS 622 (983)
Q Consensus 546 -ID~~--Q~~wF~~ll~~~v~~~d~VIL~tHeP~w~~~~~~~~~~~~~l~~Lie~~L~~RV~L~LAGHiHhYqR~~~~~~ 622 (983)
.|.. -.++.+++. .+.-|-||+++|-|... ...+.+++ ..++++|+||.|..+.-. .
T Consensus 153 ~~d~~~~~~~~v~~~~---~~~~D~iVvl~H~g~~~------------d~~la~~~--~~iD~IlgGH~H~~~~~~--~- 212 (257)
T cd07406 153 YRDYVETARELVDELR---EQGADLIIALTHMRLPN------------DKRLAREV--PEIDLILGGHDHEYILVQ--V- 212 (257)
T ss_pred EcCHHHHHHHHHHHHH---hCCCCEEEEEeccCchh------------hHHHHHhC--CCCceEEecccceeEeee--E-
Confidence 1211 122332221 23458999999998521 11233443 469999999999865211 1
Q ss_pred CCCcccceEEEecCCCCCCC
Q 002007 623 DGPVYVQHLLVNGCGGAFLH 642 (983)
Q Consensus 623 ~G~~~~~~lIVsGGGGAfLh 642 (983)
. ...++-+|+.|.++-
T Consensus 213 ~----~t~vv~~g~~g~~vg 228 (257)
T cd07406 213 G----GTPIVKSGSDFRTVY 228 (257)
T ss_pred C----CEEEEeCCcCcceEE
Confidence 1 224455566665443
No 41
>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain. TTHA0053 is an uncharacterized Thermus thermophilus protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=97.49 E-value=0.00053 Score=66.56 Aligned_cols=49 Identities=22% Similarity=0.066 Sum_probs=28.3
Q ss_pred eEEEEecCCCCccccccCC--cchhhHHHHHHhhhCCceeEEEcCccCCCceee
Q 002007 567 SVIIMTHEPNWLLDWYFNN--VSGKNVKHLICDYLKGRCKLRIAGDMHHYMRHS 618 (983)
Q Consensus 567 ~VIL~tHeP~w~~~~~~~~--~~~~~l~~Lie~~L~~RV~L~LAGHiHhYqR~~ 618 (983)
..|+++|+|.+-....... ...+.+.++++ +.++++.|+||+|......
T Consensus 57 ~~Ilv~H~pp~~~~~~~~~~~~g~~~l~~~l~---~~~~~~vl~GH~H~~~~~~ 107 (129)
T cd07403 57 VDILLTHAPPAGIGDGEDFAHRGFEAFLDFID---RFRPKLFIHGHTHLNYGYQ 107 (129)
T ss_pred cCEEEECCCCCcCcCcccccccCHHHHHHHHH---HHCCcEEEEcCcCCCcCcc
Confidence 5689999998744321110 11222222333 4579999999999644433
No 42
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=97.47 E-value=0.00024 Score=68.22 Aligned_cols=60 Identities=15% Similarity=0.258 Sum_probs=36.5
Q ss_pred CCeEEEEecCCCCccccccCCcchhhHHHHHHhhhCCceeEEEcCccCCCceeeecCCCCCcccceEEEecCCCC
Q 002007 565 RDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMRHSYVPSDGPVYVQHLLVNGCGGA 639 (983)
Q Consensus 565 ~d~VIL~tHeP~w~~~~~~~~~~~~~l~~Lie~~L~~RV~L~LAGHiHhYqR~~~~~~~G~~~~~~lIVsGGGGA 639 (983)
+...|+++|.+.+.... ..+.+.. .+...+++++++||+|..+..... +..++..|+-+.
T Consensus 80 ~~~~i~~~H~~~~~~~~-----~~~~~~~---~~~~~~~~~~~~GH~H~~~~~~~~-------~~~~~~~Gs~~~ 139 (156)
T PF12850_consen 80 DGFKILLSHGHPYDVQW-----DPAELRE---ILSRENVDLVLHGHTHRPQVFKIG-------GIHVINPGSIGG 139 (156)
T ss_dssp TTEEEEEESSTSSSSTT-----THHHHHH---HHHHTTSSEEEESSSSSEEEEEET-------TEEEEEE-GSSS
T ss_pred cCCeEEEECCCCccccc-----Chhhhhh---hhcccCCCEEEcCCcccceEEEEC-------CEEEEECCcCCC
Confidence 46888999988776431 1122222 222568999999999986555411 236677776553
No 43
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=97.42 E-value=0.00067 Score=71.87 Aligned_cols=18 Identities=28% Similarity=0.257 Sum_probs=14.2
Q ss_pred CCceeEEEcCccCCCcee
Q 002007 600 KGRCKLRIAGDMHHYMRH 617 (983)
Q Consensus 600 ~~RV~L~LAGHiHhYqR~ 617 (983)
+++++++++||+|.-..+
T Consensus 185 ~~~~~~~i~GH~H~~~~~ 202 (241)
T PRK05340 185 KHGVDTLIHGHTHRPAIH 202 (241)
T ss_pred HhCCCEEEECcccCccee
Confidence 358999999999975444
No 44
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph
Probab=97.42 E-value=0.00058 Score=66.69 Aligned_cols=42 Identities=17% Similarity=0.101 Sum_probs=25.8
Q ss_pred CCeEEEEecCCCCccccccCCcchhhHHHHHHhhhCCceeEEEcCccCCCc
Q 002007 565 RDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYM 615 (983)
Q Consensus 565 ~d~VIL~tHeP~w~~~~~~~~~~~~~l~~Lie~~L~~RV~L~LAGHiHhYq 615 (983)
++..|+++|.|.+..... .+. ..+++ ..+++++++||+|...
T Consensus 74 ~g~~i~v~Hg~~~~~~~~-----~~~-~~~~~---~~~~d~vi~GHtH~~~ 115 (155)
T cd00841 74 GGKRIFLTHGHLYGVKNG-----LDR-LYLAK---EGGADVVLYGHTHIPV 115 (155)
T ss_pred CCEEEEEECCcccccccc-----hhh-hhhhh---hcCCCEEEECcccCCc
Confidence 356788999887654311 111 11112 3478999999999643
No 45
>COG1768 Predicted phosphohydrolase [General function prediction only]
Probab=97.38 E-value=0.0025 Score=66.64 Aligned_cols=48 Identities=23% Similarity=0.315 Sum_probs=36.5
Q ss_pred CCCeEEEEecCCCCccccccCCcchhhHHHHHHhhhCCceeEEEcCccCCCceeee
Q 002007 564 ERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMRHSY 619 (983)
Q Consensus 564 ~~d~VIL~tHeP~w~~~~~~~~~~~~~l~~Lie~~L~~RV~L~LAGHiHhYqR~~~ 619 (983)
+.+.+|||+|-|+.+.+. +...+.+++|+ +||+..+-||+|.-+|=.+
T Consensus 157 ~~~~fivM~HYPP~s~~~-----t~~~~sevlee---~rv~~~lyGHlHgv~~p~~ 204 (230)
T COG1768 157 GVSKFIVMTHYPPFSDDG-----TPGPFSEVLEE---GRVSKCLYGHLHGVPRPNI 204 (230)
T ss_pred CcCeEEEEEecCCCCCCC-----CCcchHHHHhh---cceeeEEeeeccCCCCCCC
Confidence 357999999999988763 23335555665 6999999999998776543
No 46
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=97.25 E-value=0.0032 Score=66.51 Aligned_cols=34 Identities=24% Similarity=0.219 Sum_probs=21.3
Q ss_pred CCceeEEEcCccCCCceeeecCCCCCcccceEEEecC
Q 002007 600 KGRCKLRIAGDMHHYMRHSYVPSDGPVYVQHLLVNGC 636 (983)
Q Consensus 600 ~~RV~L~LAGHiHhYqR~~~~~~~G~~~~~~lIVsGG 636 (983)
+.++++.++||+|.=+.+.-.. .|. ...++|.|.
T Consensus 183 ~~~~~~~i~GHtH~~~~~~~~~-~~~--~~~~~~lgd 216 (231)
T TIGR01854 183 RYGVDRLIHGHTHRPAIHPLQA-DGQ--PATRIVLGD 216 (231)
T ss_pred HcCCCEEEECCccCcceeeccc-CCC--ccEEEEECC
Confidence 3589999999999755443221 111 225777765
No 47
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=97.19 E-value=0.0013 Score=64.94 Aligned_cols=14 Identities=21% Similarity=0.188 Sum_probs=11.9
Q ss_pred CCceeEEEcCccCC
Q 002007 600 KGRCKLRIAGDMHH 613 (983)
Q Consensus 600 ~~RV~L~LAGHiHh 613 (983)
..+++++++||+|.
T Consensus 104 ~~~~d~vi~GHtH~ 117 (158)
T TIGR00040 104 ELGVDVLIFGHTHI 117 (158)
T ss_pred ccCCCEEEECCCCC
Confidence 35789999999995
No 48
>KOG1432 consensus Predicted DNA repair exonuclease SIA1 [General function prediction only]
Probab=97.19 E-value=0.01 Score=67.03 Aligned_cols=206 Identities=17% Similarity=0.103 Sum_probs=101.4
Q ss_pred CCCCceEEEEEecc--CCCCC------CchHHHHHhcccccccccCCCccccCCccEEEEcccccCCCCChhhhhccccc
Q 002007 377 SEKEDLWFDFMADT--GDGGN------SSYSVARLLAQPHIRVTRDDSVFTLPRGDVLLIGGDLAYPNPSAFTYERRLFR 448 (983)
Q Consensus 377 ~~d~~lwFd~VaDt--GDG~d------StYaVA~LmAqp~L~v~~~~~~~~lPRgdfLVlgGDlvYP~gs~e~Y~~Rf~~ 448 (983)
.+++++-+..+||+ |.|.. ..++ -..++... ++.-=.......++|+|++.||+++-. +.+++++-+..
T Consensus 49 ~~~g~fKIlqvaDlH~g~g~~~~c~d~~p~~-~~~csD~n-Tt~F~~rvL~sE~PDlVVfTGD~i~g~-~t~Da~~sl~k 125 (379)
T KOG1432|consen 49 REDGTFKILQVADLHFGFGRETRCRDVLPSE-EACCSDLN-TTNFVSRVLASEKPDLVVFTGDNIFGH-STQDAATSLMK 125 (379)
T ss_pred cCCCceEEEEeeccccccCCCccccccCcch-hhhhcCcc-HHHHHHHHHhccCCCEEEEeCCccccc-ccHhHHHHHHH
Confidence 56789999999999 54411 1222 11111000 000000001123569999999999973 33444443322
Q ss_pred chhhhcCCCCCCcccccccCCCCCCCCCcccccCCCCcEEEeCCCCCCCCChh-HHHHHhhcc-------c-cCCccccC
Q 002007 449 PFEYALQPPPWYKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFDGLN-TFMRFICHK-------S-WLGGWFMP 519 (983)
Q Consensus 449 Pye~Al~~~~~~~~~~~~~~~pelp~~~~~l~~~~gP~ifAIPGNHDWyDGL~-aF~r~F~~r-------~-~lgGW~mp 519 (983)
-.+- +-+ .+.++-|+.||||=-..++ ..++-|... . ...|+...
T Consensus 126 AvaP--------------------------~I~-~~IPwA~~lGNHDdes~ltr~ql~~~i~~lP~s~~~v~p~dg~~~~ 178 (379)
T KOG1432|consen 126 AVAP--------------------------AID-RKIPWAAVLGNHDDESDLTRLQLMKFISKLPYSLSQVNPPDGHMYI 178 (379)
T ss_pred Hhhh--------------------------Hhh-cCCCeEEEecccccccccCHHHHHHHHhcCCCccccCCCcccceee
Confidence 2211 112 3455999999999655543 223322221 1 12233221
Q ss_pred CC--cceEEEEcC--------C--cEEEEEEecCCC----------CCCCHHHHHHHHHHHHhhc----CCCC-eEEEEe
Q 002007 520 QK--KSYFALQLP--------K--GWWVFGLDLALH----------CDIDVYQFKFFAELVKEQV----GERD-SVIIMT 572 (983)
Q Consensus 520 Q~--~SYFAlrLp--------~--~wWLlGLDtql~----------gdID~~Q~~wF~~ll~~~v----~~~d-~VIL~t 572 (983)
+. ..| -++++ . ..=|..||+... +.|...|.+|+++.-.+.+ ..++ +=+..-
T Consensus 179 ~~g~gny-n~~i~~~~ds~~~~~sv~~lyfld~~~~~s~~~~~~~Ydwik~sq~~wl~~~~~~~~~~~~~~~P~p~La~~ 257 (379)
T KOG1432|consen 179 IDGFGNY-NLQIEGAIDSELENKSVFNLYFLDSSSYTSVPPLLPGYDWIKESQLEWLSDTSKEFKEPNSKYNPQPGLAFF 257 (379)
T ss_pred eecccce-EEEeccCCCcccccCceeeEEEEecCCcccccccccCccchhhhhHHHHhhhhhhhhcccCccCCCCceEEE
Confidence 21 233 33333 1 134677777532 2356789999999762211 1223 667777
Q ss_pred cCCCCccccccC-Cc--------c--hhhHHHHHHhhh-CCceeEEEcCccCC
Q 002007 573 HEPNWLLDWYFN-NV--------S--GKNVKHLICDYL-KGRCKLRIAGDMHH 613 (983)
Q Consensus 573 HeP~w~~~~~~~-~~--------~--~~~l~~Lie~~L-~~RV~L~LAGHiHh 613 (983)
|-|.=-...... .+ + ...-...+..+- +.+|+.+++||.|.
T Consensus 258 HIP~~E~~~~~~~tp~~g~~~E~~~~~~~~sg~~~~L~~r~~Vk~vf~GHdHv 310 (379)
T KOG1432|consen 258 HIPLPEFLELESKTPLIGVFQEGVSASKHNSGFLTTLVNRGNVKGVFCGHDHV 310 (379)
T ss_pred EcccHHHhhccCCCcccceeeccccccccccHHHHHHHhccCcceEEeccccc
Confidence 877532221111 00 0 000011223332 57899999999996
No 49
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=97.18 E-value=0.0022 Score=69.11 Aligned_cols=161 Identities=21% Similarity=0.318 Sum_probs=76.1
Q ss_pred CccEEEEcccccCCCCChhhhhccc---ccchhhhcCCCCCCcccccccCCCCCCC----------CC-cccccCCCCcE
Q 002007 422 RGDVLLIGGDLAYPNPSAFTYERRL---FRPFEYALQPPPWYKKDHVAVNKPEVPS----------GV-PELKQYDGPQC 487 (983)
Q Consensus 422 RgdfLVlgGDlvYP~gs~e~Y~~Rf---~~Pye~Al~~~~~~~~~~~~~~~pelp~----------~~-~~l~~~~gP~i 487 (983)
++|.|++.||+.=+.+...+|++-- -+| +|++.-+ .. ..+.. -++++
T Consensus 32 ~~D~~v~~G~~~~~~a~~~e~~~a~~~~r~p------------------~k~~i~~e~~~~~e~~~~ff~~L~~-~~~p~ 92 (255)
T PF14582_consen 32 GPDAVVFVGDLLKAEARSDEYERAQEEQREP------------------DKSEINEEECYDSEALDKFFRILGE-LGVPV 92 (255)
T ss_dssp T-SEEEEES-SS-TCHHHHHHHHHHHTT----------------------THHHHHHHHHHHHHHHHHHHHHHC-C-SEE
T ss_pred CCCEEEEeccccccchhhhHHHHHhhhccCc------------------chhhhhhhhhhhHHHHHHHHHHHHh-cCCcE
Confidence 5699999999988877777776210 001 0000000 00 01222 24569
Q ss_pred EEeCCCCCCCCChhHHHHHhhcccc-CCccccCCCcceEEEEcCCcEEEEEEecCCCCC--CC--H-----HHHHHHHHH
Q 002007 488 YIIPGNHDWFDGLNTFMRFICHKSW-LGGWFMPQKKSYFALQLPKGWWVFGLDLALHCD--ID--V-----YQFKFFAEL 557 (983)
Q Consensus 488 fAIPGNHDWyDGL~aF~r~F~~r~~-lgGW~mpQ~~SYFAlrLp~~wWLlGLDtql~gd--ID--~-----~Q~~wF~~l 557 (983)
+.||||||=+ +..|++.-..... ....++-++ |+|-.+-+ +-++|+.-....+ .+ . --.+|-.+.
T Consensus 93 ~~vPG~~Dap--~~~~lr~a~~~e~v~p~~~~vH~-sf~~~~g~--y~v~G~GGeI~~~~~~~~~~LrYP~weaey~lk~ 167 (255)
T PF14582_consen 93 FVVPGNMDAP--ERFFLREAYNAEIVTPHIHNVHE-SFFFWKGE--YLVAGMGGEITDDQREEEFKLRYPAWEAEYSLKF 167 (255)
T ss_dssp EEE--TTS-S--HHHHHHHHHHCCCC-TTEEE-CT-CEEEETTT--EEEEEE-SEEESSS-BCSSS-EEEHHHHHHHHGG
T ss_pred EEecCCCCch--HHHHHHHHhccceeccceeeeee-eecccCCc--EEEEecCccccCCCccccccccchHHHHHHHHHH
Confidence 9999999953 2245554433111 222334343 34333323 5678886433211 11 0 123344444
Q ss_pred HHhhcCCCCeEEEEecCCC-CccccccCCcchhhHHHHHHhhhCCceeEEEcCccCC
Q 002007 558 VKEQVGERDSVIIMTHEPN-WLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHH 613 (983)
Q Consensus 558 l~~~v~~~d~VIL~tHeP~-w~~~~~~~~~~~~~l~~Lie~~L~~RV~L~LAGHiHh 613 (983)
+.+ +. +.+.|++.|-|+ .-.+..+ ...+.++++|+++ +.+++|+||+|-
T Consensus 168 l~e-lk-~~r~IlLfhtpPd~~kg~~h--~GS~~V~dlIk~~---~P~ivl~Ghihe 217 (255)
T PF14582_consen 168 LRE-LK-DYRKILLFHTPPDLHKGLIH--VGSAAVRDLIKTY---NPDIVLCGHIHE 217 (255)
T ss_dssp GGG-CT-SSEEEEEESS-BTBCTCTBT--TSBHHHHHHHHHH-----SEEEE-SSS-
T ss_pred HHh-cc-cccEEEEEecCCccCCCccc--ccHHHHHHHHHhc---CCcEEEeccccc
Confidence 433 33 458999999999 2222111 2245688888887 889999999995
No 50
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=97.18 E-value=0.0089 Score=64.55 Aligned_cols=122 Identities=17% Similarity=0.144 Sum_probs=61.6
Q ss_pred EEeCCCCCCCCChhHHHHHhhccc--cC-Cccc-----cCCCcceEEEEcC-C-cEEEEEEecCCCC---------C---
Q 002007 488 YIIPGNHDWFDGLNTFMRFICHKS--WL-GGWF-----MPQKKSYFALQLP-K-GWWVFGLDLALHC---------D--- 545 (983)
Q Consensus 488 fAIPGNHDWyDGL~aF~r~F~~r~--~l-gGW~-----mpQ~~SYFAlrLp-~-~wWLlGLDtql~g---------d--- 545 (983)
++.+||||+.-|.+.+.+..-.-. ++ .... .|.-.+|..++.. . ..=++|+=+.... +
T Consensus 86 ~~~lGNHe~d~g~~~l~~~~~~~~~~~l~aNv~~~~~~~~~~~~~~i~~~~~g~kVgviG~~~~~~~~~~~~~~~~~~~~ 165 (277)
T cd07410 86 AGTLGNHEFNYGLDYLDKVIKQANFPVLSANVIDADTGEPFLKPYVILERDVGVKVGIIGLTTPQIPNWEKPNLIGGLKF 165 (277)
T ss_pred EEeecccCcccCHHHHHHHHHhCCCCEEEEEEEeCCCCCcccCCEEEEEecCCCEEEEEecCCcccccccCcccCCCcEE
Confidence 556799997667776666542211 11 1111 1222357667776 2 2345555322110 1
Q ss_pred CCHH-HHHHHHHHHHhhcCCCCeEEEEecCCCCccccccCCcc-hhhHHHHHHhhhCCceeEEEcCccCCCc
Q 002007 546 IDVY-QFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNVS-GKNVKHLICDYLKGRCKLRIAGDMHHYM 615 (983)
Q Consensus 546 ID~~-Q~~wF~~ll~~~v~~~d~VIL~tHeP~w~~~~~~~~~~-~~~l~~Lie~~L~~RV~L~LAGHiHhYq 615 (983)
.|.. ..+...+.+++ +.-|-||+++|-+...... .... ......+.+++ ..++++|+||.|...
T Consensus 166 ~d~~~~~~~~v~~lr~--~~~D~IIvl~H~g~~~~~~--~~~~~~~~~~~la~~~--~~vD~IlgGHsH~~~ 231 (277)
T cd07410 166 TDPVETAKKYVPKLRA--EGADVVVVLAHGGFERDLE--ESLTGENAAYELAEEV--PGIDAILTGHQHRRF 231 (277)
T ss_pred cCHHHHHHHHHHHHHH--cCCCEEEEEecCCcCCCcc--cccCCccHHHHHHhcC--CCCcEEEeCCCcccc
Confidence 1211 23333333432 3458999999987653211 0111 12223444443 469999999999754
No 51
>cd07411 MPP_SoxB_N Thermus thermophilus SoxB and related proteins, N-terminal metallophosphatase domain. SoxB (sulfur oxidation protein B) is a periplasmic thiosulfohydrolase and an essential component of the sulfur oxidation pathway in archaea and bacteria. SoxB has a dinuclear manganese cluster and is thought to catalyze the release of sulfate from a protein-bound cysteine S-thiosulfonate. SoxB is expressed from the sox (sulfur oxidation) gene cluster, which encodes 15 other sox genes, and has two domains, an N-terminal metallophosphatase domain and a C-terminal 5'-nucleotidase domain. SoxB binds the SoxYZ complex and is thought to function as a sulfate-thiohydrolase. SoxB is closely related to the UshA, YchR, and CpdB proteins, all of which have the same two-domain architecture. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzy
Probab=97.10 E-value=0.01 Score=63.89 Aligned_cols=112 Identities=13% Similarity=0.067 Sum_probs=58.9
Q ss_pred EeCCCCCCCCChhHHHHHhhccc--cCC------ccccCCCcceEEEEcCC-cEEEEEEecCCCCCCC----------HH
Q 002007 489 IIPGNHDWFDGLNTFMRFICHKS--WLG------GWFMPQKKSYFALQLPK-GWWVFGLDLALHCDID----------VY 549 (983)
Q Consensus 489 AIPGNHDWyDGL~aF~r~F~~r~--~lg------GW~mpQ~~SYFAlrLp~-~wWLlGLDtql~gdID----------~~ 549 (983)
|+-||||+.-|.+.+.+.+-+-. ++. +...|.-.+|..++... ..=++|+.+....... ..
T Consensus 87 a~~GNHefd~g~~~l~~~~~~~~~~~l~aN~~~~~~~~~~~~~~~i~~~~g~kVgviG~~~~~~~~~~~~~~~~~~~~~~ 166 (264)
T cd07411 87 AMVGHWEFTYGPERVRELFGRLNWPFLAANVYDDEAGERVFPPYRIKEVGGVKIGVIGQTFPYVPIANPPRFTPGLTFGI 166 (264)
T ss_pred EEecccccccCHHHHHHHHhhCCCCEEEEEEEeCCCCCcccCCEEEEEECCEEEEEEEeccCCcccccCcCCCCCcEECC
Confidence 33399997778777766553211 100 01111222465555543 2557788654221110 11
Q ss_pred HHHHHHHHHHh--hcCCCCeEEEEecCCCCccccccCCcchhhHHHHHHhhhCCceeEEEcCccCCC
Q 002007 550 QFKFFAELVKE--QVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHY 614 (983)
Q Consensus 550 Q~~wF~~ll~~--~v~~~d~VIL~tHeP~w~~~~~~~~~~~~~l~~Lie~~L~~RV~L~LAGHiHhY 614 (983)
..+.+.+.+.+ +.+..|-||+++|-+.-. -..+.+++ ..++++|+||.|..
T Consensus 167 ~~~~~~~~~~~~~~~~~~D~iI~l~H~g~~~------------~~~la~~~--~~iDlilgGH~H~~ 219 (264)
T cd07411 167 REEELQEVVVKLRREEGVDVVVLLSHNGLPV------------DVELAERV--PGIDVILSGHTHER 219 (264)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEecCCchh------------hHHHHhcC--CCCcEEEeCccccc
Confidence 23344443221 124568999999987521 11233333 56999999999964
No 52
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s
Probab=96.99 E-value=0.011 Score=64.59 Aligned_cols=51 Identities=8% Similarity=0.079 Sum_probs=33.4
Q ss_pred CCeEEEEecCCCCccccccCC-----------------c-chhhHHHHHHhhhCCceeEEEcCccCC-Cceee
Q 002007 565 RDSVIIMTHEPNWLLDWYFNN-----------------V-SGKNVKHLICDYLKGRCKLRIAGDMHH-YMRHS 618 (983)
Q Consensus 565 ~d~VIL~tHeP~w~~~~~~~~-----------------~-~~~~l~~Lie~~L~~RV~L~LAGHiHh-YqR~~ 618 (983)
++.=|++||+|+.--..+.+. . ....++.+++.+ |.+..+|||.|. |++..
T Consensus 164 ~~vDIlLSHdWP~gI~~~~~~~~l~~~~~~~~~~~~~~~~Gs~~~~~ll~~l---kPryhf~gH~H~~f~~~~ 233 (262)
T cd00844 164 QPIDIFLSHDWPRGIYKHGDKKQLLRKKPFFRQDIESGTLGSPAAEELLKHL---KPRYWFSAHLHVKFAALV 233 (262)
T ss_pred CCCcEEEeCCCCcchhhccchHHhhhcCccchhcccccCCCCHHHHHHHHHh---CCCEEEEecCCcccceec
Confidence 356799999998776443321 0 112244555555 899999999996 66554
No 53
>cd07389 MPP_PhoD Bacillus subtilis PhoD and related proteins, metallophosphatase domain. PhoD (also known as alkaline phosphatase D/APaseD in Bacillus subtilis) is a secreted phosphodiesterase encoded by phoD of the Pho regulon in Bacillus subtilis. PhoD homologs are found in prokaryotes, eukaryotes, and archaea. PhoD contains a twin arginine (RR) motif and is transported by the Tat (Twin-arginine translocation) translocation pathway machinery (TatAyCy). This family also includes the Fusarium oxysporum Fso1 protein. PhoD belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF
Probab=96.86 E-value=0.0057 Score=63.59 Aligned_cols=25 Identities=12% Similarity=-0.065 Sum_probs=19.8
Q ss_pred CCcceEEEEcCCcEEEEEEecCCCC
Q 002007 520 QKKSYFALQLPKGWWVFGLDLALHC 544 (983)
Q Consensus 520 Q~~SYFAlrLp~~wWLlGLDtql~g 544 (983)
+..-|+.++++....|+.||+...-
T Consensus 145 ~~~~y~~~~~G~~~~~~~lD~R~~R 169 (228)
T cd07389 145 RGGIYRSFRFGDLVDLILLDTRTYR 169 (228)
T ss_pred CceEEEEEecCCcceEEEEeccccc
Confidence 3457999999886689999987654
No 54
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l
Probab=96.78 E-value=0.0015 Score=66.74 Aligned_cols=30 Identities=17% Similarity=0.078 Sum_probs=20.9
Q ss_pred CCceeEEEcCccCCCceeeecCCCCCcccceEEEecC
Q 002007 600 KGRCKLRIAGDMHHYMRHSYVPSDGPVYVQHLLVNGC 636 (983)
Q Consensus 600 ~~RV~L~LAGHiHhYqR~~~~~~~G~~~~~~lIVsGG 636 (983)
..+++++++||+|.-...... ...++++|+
T Consensus 187 ~~~~~~~i~GH~H~~~~~~~~-------~~~~~n~G~ 216 (217)
T cd07398 187 RKGVDGVICGHTHRPALHELD-------GKLYINLGD 216 (217)
T ss_pred hcCCCEEEECCCCCCCeEEEC-------CEEEEECCC
Confidence 578999999999976554422 125677664
No 55
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=96.76 E-value=0.014 Score=67.65 Aligned_cols=41 Identities=15% Similarity=0.135 Sum_probs=26.5
Q ss_pred CeEEEEecCCCCccccccCCcchhhHHHHHHhhhCCceeEEEcCccCCCc
Q 002007 566 DSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYM 615 (983)
Q Consensus 566 d~VIL~tHeP~w~~~~~~~~~~~~~l~~Lie~~L~~RV~L~LAGHiHhYq 615 (983)
..-|++.|....... .+ ...-+++++...++++.||+|..+
T Consensus 201 ~fnIlv~Hq~~~~~~-----~~----~~ipe~llp~~fDYValGHiH~~~ 241 (405)
T TIGR00583 201 WFNLLVLHQNHAAHT-----ST----SFLPESFIPDFFDLVIWGHEHECL 241 (405)
T ss_pred ceEEEEeCceecCCC-----Cc----ccCchhhhhccCcEEEeccccccc
Confidence 357999999863221 11 111245555679999999999754
No 56
>PHA02546 47 endonuclease subunit; Provisional
Probab=96.76 E-value=0.012 Score=66.02 Aligned_cols=13 Identities=31% Similarity=0.590 Sum_probs=11.2
Q ss_pred CcEEEeCCCCCCC
Q 002007 485 PQCYIIPGNHDWF 497 (983)
Q Consensus 485 P~ifAIPGNHDWy 497 (983)
.++++|+||||.+
T Consensus 77 i~v~~I~GNHD~~ 89 (340)
T PHA02546 77 ITLHVLVGNHDMY 89 (340)
T ss_pred CeEEEEccCCCcc
Confidence 4599999999975
No 57
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.68 E-value=0.0039 Score=67.24 Aligned_cols=17 Identities=35% Similarity=0.511 Sum_probs=13.8
Q ss_pred cEEEeCCCCCCCCChhH
Q 002007 486 QCYIIPGNHDWFDGLNT 502 (983)
Q Consensus 486 ~ifAIPGNHDWyDGL~a 502 (983)
++++|+||||..+.+..
T Consensus 77 ~v~~i~GNHD~~~~~~~ 93 (253)
T TIGR00619 77 PIVVISGNHDSAQRLSA 93 (253)
T ss_pred eEEEEccCCCChhhccc
Confidence 49999999999776543
No 58
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=96.64 E-value=0.0055 Score=69.33 Aligned_cols=52 Identities=29% Similarity=0.435 Sum_probs=32.5
Q ss_pred CccEEEEcccccCCCCChhhhhc-ccccchhhhcCCCCCCcccccccCCCCCCCCCcccccCCCCcEEEeCCCCCCCCCh
Q 002007 422 RGDVLLIGGDLAYPNPSAFTYER-RLFRPFEYALQPPPWYKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFDGL 500 (983)
Q Consensus 422 RgdfLVlgGDlvYP~gs~e~Y~~-Rf~~Pye~Al~~~~~~~~~~~~~~~pelp~~~~~l~~~~gP~ifAIPGNHDWyDGL 500 (983)
+.|+||++||+ |..+....+.- ++.+=++. +++ .+.++|+|+||||.-+++
T Consensus 40 ~vD~vliAGDl-Fd~~~Ps~~a~~~~~~~l~~--------------------------l~~-~~Ipv~~I~GNHD~~~~~ 91 (390)
T COG0420 40 KVDFVLIAGDL-FDTNNPSPRALKLFLEALRR--------------------------LKD-AGIPVVVIAGNHDSPSRL 91 (390)
T ss_pred cCCEEEEcccc-ccCCCCCHHHHHHHHHHHHH--------------------------hcc-CCCcEEEecCCCCchhcc
Confidence 44999999995 66655544442 23222222 122 245599999999987664
Q ss_pred h
Q 002007 501 N 501 (983)
Q Consensus 501 ~ 501 (983)
.
T Consensus 92 ~ 92 (390)
T COG0420 92 S 92 (390)
T ss_pred c
Confidence 4
No 59
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=96.49 E-value=0.065 Score=58.57 Aligned_cols=117 Identities=14% Similarity=0.173 Sum_probs=61.0
Q ss_pred CCcEEEeCCCCCCCCChhHHHHHhhccc--cC-Cccc--------cCCCcceEEEEcCC-cEEEEEEecCCCCC------
Q 002007 484 GPQCYIIPGNHDWFDGLNTFMRFICHKS--WL-GGWF--------MPQKKSYFALQLPK-GWWVFGLDLALHCD------ 545 (983)
Q Consensus 484 gP~ifAIPGNHDWyDGL~aF~r~F~~r~--~l-gGW~--------mpQ~~SYFAlrLp~-~wWLlGLDtql~gd------ 545 (983)
+..+. .+||||+--|.+.+.+.+-+-. ++ .+.. .+.-.+|-.++... ..-++|+-+.....
T Consensus 82 g~D~~-~lGNHefd~G~~~l~~~~~~~~~p~l~aNv~~~~~~~~~~~~~~p~~i~~~~G~kIgviG~~~~~~~~~~~~~~ 160 (281)
T cd07409 82 GYDAM-TLGNHEFDDGVEGLAPFLNNLKFPVLSANIDTSNEPPLLDGLLKPSTILTVGGEKIGIIGYTTPDTTELSSPGG 160 (281)
T ss_pred CCCEE-EeccccccCCHHHHHHHHHhCCCCEEEEeeecCCCccccccccCCeEEEEECCEEEEEEEEecCcccccccCCC
Confidence 34444 4699999888887777553221 11 1111 11123465555432 26677876543211
Q ss_pred -CC-HHHHHHHHHHHHh-hcCCCCeEEEEecCCCCccccccCCcchhhHHHHHHhhhCCceeEEEcCccCCCc
Q 002007 546 -ID-VYQFKFFAELVKE-QVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYM 615 (983)
Q Consensus 546 -ID-~~Q~~wF~~ll~~-~v~~~d~VIL~tHeP~w~~~~~~~~~~~~~l~~Lie~~L~~RV~L~LAGHiHhYq 615 (983)
+. ....+-.++.+++ +.+.-|-||+++|-..- .-..+.+++ ..++++|+||.|...
T Consensus 161 ~~~~~d~~~~~~~~v~~lr~~~~D~II~l~H~G~~------------~d~~la~~~--~giD~IiggH~H~~~ 219 (281)
T cd07409 161 KVKFLDEIEAAQKEADKLKAQGVNKIIALSHSGYE------------VDKEIARKV--PGVDVIVGGHSHTFL 219 (281)
T ss_pred ceEECCHHHHHHHHHHHHHhcCCCEEEEEeccCch------------hHHHHHHcC--CCCcEEEeCCcCccc
Confidence 11 0112233333321 11235889999998631 012333444 569999999999753
No 60
>KOG3770 consensus Acid sphingomyelinase and PHM5 phosphate metabolism protein [Lipid transport and metabolism]
Probab=96.43 E-value=0.022 Score=68.02 Aligned_cols=97 Identities=16% Similarity=0.237 Sum_probs=63.2
Q ss_pred CCCcceEEEEcCCcEEEEEEecCCCC---------CCC-HHHHHHHHHHHHhhcCCCCeEEEEecCCCCccccccCCcch
Q 002007 519 PQKKSYFALQLPKGWWVFGLDLALHC---------DID-VYQFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNVSG 588 (983)
Q Consensus 519 pQ~~SYFAlrLp~~wWLlGLDtql~g---------dID-~~Q~~wF~~ll~~~v~~~d~VIL~tHeP~w~~~~~~~~~~~ 588 (983)
-+++.||+.....|..++.|++.-.. ..| .+|++||..+++++-..++.|=+++|=|.=..... .+- .
T Consensus 302 ~~kga~Y~~~~~~Glr~IslNt~~c~~~N~~L~~n~tdp~~~lqWf~~~L~~ae~~GekVhil~HIPpG~~~c~-~~w-s 379 (577)
T KOG3770|consen 302 FLKGAYYLVLVIDGLRLISLNTNYCSAPNFWLYANQTDPIDQLQWFVDQLQEAESAGEKVHILGHIPPGDGVCL-EGW-S 379 (577)
T ss_pred hhcCcEEEEeecCCceEEEeccccccccceeeeecCCCchHHhhHHHHHHHHHHhcCCEEEEEEeeCCCCcchh-hhh-h
Confidence 35667999999999999999986321 122 47899999999866677899999999998542211 111 1
Q ss_pred hhHHHHHHhhhCCceeEEEcCccC-CCceee
Q 002007 589 KNVKHLICDYLKGRCKLRIAGDMH-HYMRHS 618 (983)
Q Consensus 589 ~~l~~Lie~~L~~RV~L~LAGHiH-hYqR~~ 618 (983)
.+.-..+.++ ..-+.-.+-||.| ...|..
T Consensus 380 ~~f~~iv~r~-~~tI~gqf~GH~h~d~f~v~ 409 (577)
T KOG3770|consen 380 INFYRIVNRF-RSTIAGQFYGHTHIDEFRVF 409 (577)
T ss_pred HHHHHHHHHH-HHhhhhhccccCcceeEEEE
Confidence 1121222222 3346678999999 444433
No 61
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.38 E-value=0.011 Score=64.03 Aligned_cols=30 Identities=20% Similarity=0.154 Sum_probs=21.0
Q ss_pred CCceeEEEcCccCCCceeeecCCCCCcccceEEEecC
Q 002007 600 KGRCKLRIAGDMHHYMRHSYVPSDGPVYVQHLLVNGC 636 (983)
Q Consensus 600 ~~RV~L~LAGHiHhYqR~~~~~~~G~~~~~~lIVsGG 636 (983)
++.|+.+++||+|+-+-+.- + +..+||.|.
T Consensus 185 ~~~vd~vI~GH~Hr~ai~~i-~------~~~yi~lGd 214 (237)
T COG2908 185 RHGVDGVIHGHTHRPAIHNI-P------GITYINLGD 214 (237)
T ss_pred HcCCCEEEecCcccHhhccC-C------CceEEecCc
Confidence 57899999999997433321 1 237888775
No 62
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=96.34 E-value=0.085 Score=56.74 Aligned_cols=122 Identities=20% Similarity=0.223 Sum_probs=61.6
Q ss_pred CCcEEEeCCCCCCCCChhHHHHHhhccc--cC-Cccc-----cCCCcceEEEEcCCc--EEEEEEecCCC------CC--
Q 002007 484 GPQCYIIPGNHDWFDGLNTFMRFICHKS--WL-GGWF-----MPQKKSYFALQLPKG--WWVFGLDLALH------CD-- 545 (983)
Q Consensus 484 gP~ifAIPGNHDWyDGL~aF~r~F~~r~--~l-gGW~-----mpQ~~SYFAlrLp~~--wWLlGLDtql~------gd-- 545 (983)
+..+. .+||||+.-|++.+.+..-+-. ++ .... .+.-.+|-.++...| .=++|+-+... ..
T Consensus 70 g~d~~-~~GNHefd~G~~~l~~~~~~~~~~~l~aNv~~~~~~~~~~~py~i~~~~~G~kIgviG~~~~~~~~~~~~~~~~ 148 (257)
T cd07408 70 GYDAV-TPGNHEFDYGLDRLKELSKEADFPFLSANVYDNDTGKRVFKPYKIKELGNGVKVGVIGLTTPETATKTHPKNVK 148 (257)
T ss_pred CCcEE-ccccccccCCHHHHHHHHhhCCCCEEEEEEEEcCCCCcccCCEEEEEcCCCCEEEEEeecCcCcccccCccccC
Confidence 44454 5799998778887777553221 11 1111 111124655566524 44666654311 11
Q ss_pred -C---CH--HHHHHHHHHHHhhcCCCCeEEEEecCCCCccccccCCcchhhHHHHHHhhhCCceeEEEcCccCCCce
Q 002007 546 -I---DV--YQFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMR 616 (983)
Q Consensus 546 -I---D~--~Q~~wF~~ll~~~v~~~d~VIL~tHeP~w~~~~~~~~~~~~~l~~Lie~~L~~RV~L~LAGHiHhYqR 616 (983)
+ |. .-.++..+.++ .+.-|-||+++|.+...... ..+..++.++. ..++++|+||.|....
T Consensus 149 ~~~~~d~~~~~~~~~v~~l~--~~~~D~iIvl~H~G~~~~~~------~~~~~~la~~~--~giDvIigGH~H~~~~ 215 (257)
T cd07408 149 DVTFEDPIEEAKKVIVAALK--AKGADVIVALGHLGVDRTSS------PWTSTELAANV--TGIDLIIDGHSHTTIE 215 (257)
T ss_pred CcEEecHHHHHHHHHHHHHH--hCCCCEEEEEeCcCcCCCCC------CccHHHHHHhC--CCceEEEeCCCccccc
Confidence 1 21 11222112221 13468999999988654321 01122333332 4699999999997544
No 63
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=96.11 E-value=0.0069 Score=69.87 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=17.4
Q ss_pred cEEEeCCCCCCCCChhHHHHHh
Q 002007 486 QCYIIPGNHDWFDGLNTFMRFI 507 (983)
Q Consensus 486 ~ifAIPGNHDWyDGL~aF~r~F 507 (983)
++++|+||||.+..+....+.+
T Consensus 76 ~v~~I~GNHD~~~~l~~~~~~l 97 (407)
T PRK10966 76 QLVVLAGNHDSVATLNESRDLL 97 (407)
T ss_pred cEEEEcCCCCChhhhhhHHHHH
Confidence 4999999999988876655544
No 64
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=95.87 E-value=0.038 Score=56.79 Aligned_cols=16 Identities=19% Similarity=0.399 Sum_probs=12.9
Q ss_pred CCceeEEEcCccCCCc
Q 002007 600 KGRCKLRIAGDMHHYM 615 (983)
Q Consensus 600 ~~RV~L~LAGHiHhYq 615 (983)
+..++++++||+|.-.
T Consensus 104 ~~~~dvii~GHTH~p~ 119 (178)
T cd07394 104 QLDVDILISGHTHKFE 119 (178)
T ss_pred hcCCCEEEECCCCcce
Confidence 3578999999999643
No 65
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=95.56 E-value=0.5 Score=51.85 Aligned_cols=115 Identities=21% Similarity=0.263 Sum_probs=57.9
Q ss_pred CCcEEEeCCCCCCCCC-hhHHHHHhhccccCCccc--cCCCcceEEEEcCCcEE--EEEEecCC-CCCCCHHHHHHHHHH
Q 002007 484 GPQCYIIPGNHDWFDG-LNTFMRFICHKSWLGGWF--MPQKKSYFALQLPKGWW--VFGLDLAL-HCDIDVYQFKFFAEL 557 (983)
Q Consensus 484 gP~ifAIPGNHDWyDG-L~aF~r~F~~r~~lgGW~--mpQ~~SYFAlrLp~~wW--LlGLDtql-~gdID~~Q~~wF~~l 557 (983)
+..++.+ |||+|=.| +..+++.....-...... .|. +.|..++.. |.- ++++-... ...++.+ ++-.+++
T Consensus 58 G~D~iTl-GNH~fD~gel~~~l~~~~~~l~~aN~~~~~pg-~~~~i~~~~-G~kIaVigl~g~~~~~~~~~P-~~~~~~~ 133 (255)
T cd07382 58 GVDVITM-GNHTWDKKEILDFIDEEPRLLRPANYPPGTPG-RGYGVVEVN-GKKIAVINLMGRVFMPPLDNP-FRAADEL 133 (255)
T ss_pred CCCEEEe-cccccCcchHHHHHhcCcCceEeeecCCCCCC-CCeEEEEEC-CEEEEEEEEecccCCCcCCCH-HHHHHHH
Confidence 4556666 99999666 334443221100011111 222 246666665 444 44443111 1123333 3345555
Q ss_pred HHhhcCCCCeEEEEecCCCCccccccCCcchhhHHHHHHhhhCCceeEEEcCccCCC
Q 002007 558 VKEQVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHY 614 (983)
Q Consensus 558 l~~~v~~~d~VIL~tHeP~w~~~~~~~~~~~~~l~~Lie~~L~~RV~L~LAGHiHhY 614 (983)
+++....-|-+|+.+|--. +.+. ..+...+.++|++++.||+|.-
T Consensus 134 v~~lk~~~D~IIV~~H~g~----------tsEk--~ala~~ldg~VdvIvGtHTHv~ 178 (255)
T cd07382 134 LEELKEEADIIFVDFHAEA----------TSEK--IALGWYLDGRVSAVVGTHTHVQ 178 (255)
T ss_pred HHHHhcCCCEEEEEECCCC----------CHHH--HHHHHhCCCCceEEEeCCCCcc
Confidence 5421223578999999732 1111 1123455789999999999964
No 66
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=95.20 E-value=0.39 Score=62.36 Aligned_cols=189 Identities=14% Similarity=0.080 Sum_probs=93.5
Q ss_pred CceEEEEEeccCCCCCCchHHHHHhcccccccccCCCccccCCccEEEE-cccccCCCCChhhhhcccccchhhhcCCCC
Q 002007 380 EDLWFDFMADTGDGGNSSYSVARLLAQPHIRVTRDDSVFTLPRGDVLLI-GGDLAYPNPSAFTYERRLFRPFEYALQPPP 458 (983)
Q Consensus 380 ~~lwFd~VaDtGDG~dStYaVA~LmAqp~L~v~~~~~~~~lPRgdfLVl-gGDlvYP~gs~e~Y~~Rf~~Pye~Al~~~~ 458 (983)
.++.+..++|+=........++.++.+... ..+++|++ +||.. .|+......+- +|.-.+|.
T Consensus 659 ~~l~Il~~nD~Hg~l~g~~r~~~~i~~~r~-----------~~~~~l~ld~GD~~--~gs~~~~~~~g-~~~~~~ln--- 721 (1163)
T PRK09419 659 WELTILHTNDFHGHLDGAAKRVTKIKEVKE-----------ENPNTILVDAGDVY--QGSLYSNLLKG-LPVLKMMK--- 721 (1163)
T ss_pred eEEEEEEEeecccCCCCHHHHHHHHHHHHh-----------hCCCeEEEecCCCC--CCcchhhhcCC-hHHHHHHh---
Confidence 459999999995222334456666654321 12355655 99965 44431111111 23333331
Q ss_pred CCcccccccCCCCCCCCCcccccCCCCcEEEeCCCCCCCCChhHHHHHhhccc--------------cCCc---c-ccCC
Q 002007 459 WYKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFDGLNTFMRFICHKS--------------WLGG---W-FMPQ 520 (983)
Q Consensus 459 ~~~~~~~~~~~pelp~~~~~l~~~~gP~ifAIPGNHDWyDGL~aF~r~F~~r~--------------~lgG---W-~mpQ 520 (983)
. -+. -++++||||+.-|.+.+.+..-+.. +++. + ..++
T Consensus 722 ----------------------~-lg~-d~~~~GNHEfd~g~~~l~~~l~~~~~~~~~~~~~~~~fp~l~aNv~~~~~~~ 777 (1163)
T PRK09419 722 ----------------------E-MGY-DASTFGNHEFDWGPDVLPDWLKGGGDPKNRHQFEKPDFPFVASNIYVKKTGK 777 (1163)
T ss_pred ----------------------C-cCC-CEEEecccccccChHHHHHHHHhcccccccccccCCCCCEEEEEEEeCCCCc
Confidence 1 123 3559999999988887777664311 1110 1 1111
Q ss_pred C----cceEEEEcCC-cEEEEEEecCC------CC---CCC-HHHHHHHHHHHHh--hcCCCCeEEEEecCCCCcccccc
Q 002007 521 K----KSYFALQLPK-GWWVFGLDLAL------HC---DID-VYQFKFFAELVKE--QVGERDSVIIMTHEPNWLLDWYF 583 (983)
Q Consensus 521 ~----~SYFAlrLp~-~wWLlGLDtql------~g---dID-~~Q~~wF~~ll~~--~v~~~d~VIL~tHeP~w~~~~~~ 583 (983)
+ ..|..++... ..=++|+-+.. .. .+. ....+-.++.+++ +.+.-|-||+++|...-.....
T Consensus 778 ~~~~~~py~I~e~~G~kIgiiGltt~~~~~~~~p~~~~~l~f~d~~e~~~~~v~~Lr~~~~~D~VV~LsH~G~~~d~~~- 856 (1163)
T PRK09419 778 LVSWAKPYILVEVNGKKVGFIGLTTPETAYKTSPGNVKNLEFKDPAEAAKKWVKELKEKEKVDAIIALTHLGSNQDRTT- 856 (1163)
T ss_pred cccccCCEEEEEECCEEEEEEEecccccccccCCCCcCCcEEcCHHHHHHHHHHHHHhhcCCCEEEEEecCCccccccc-
Confidence 1 2465555432 13356664321 01 110 0112223332221 0134589999999986432110
Q ss_pred CCcchhhHHHHHHhhhCCceeEEEcCccCCCc
Q 002007 584 NNVSGKNVKHLICDYLKGRCKLRIAGDMHHYM 615 (983)
Q Consensus 584 ~~~~~~~l~~Lie~~L~~RV~L~LAGHiHhYq 615 (983)
.......+.+++ ..++++|+||.|...
T Consensus 857 ---~~~~~~~lA~~v--~gIDvIigGHsH~~~ 883 (1163)
T PRK09419 857 ---GEITGLELAKKV--KGVDAIISAHTHTLV 883 (1163)
T ss_pred ---cccHHHHHHHhC--CCCCEEEeCCCCccc
Confidence 011123444443 359999999999753
No 67
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=94.62 E-value=0.018 Score=60.47 Aligned_cols=49 Identities=20% Similarity=0.252 Sum_probs=30.2
Q ss_pred CCccEEEEcccccCCCCChhhhhcccccchhhhcCCCCCCcccccccCCCCCCCCCcccccCCCCcEEEeCCCCCC
Q 002007 421 PRGDVLLIGGDLAYPNPSAFTYERRLFRPFEYALQPPPWYKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDW 496 (983)
Q Consensus 421 PRgdfLVlgGDlvYP~gs~e~Y~~Rf~~Pye~Al~~~~~~~~~~~~~~~pelp~~~~~l~~~~gP~ifAIPGNHDW 496 (983)
.+.|.++++||++=-++...+.-..+.+..+.+.. .+-.++.|+||||.
T Consensus 31 ~~~d~lv~lGD~vdrG~~~~~vl~~l~~l~~~~~~---------------------------~~~~v~~l~GNHE~ 79 (208)
T cd07425 31 GGSTHLVQLGDIFDRGPDVIEILWLLYKLEQEAAK---------------------------AGGKVHFLLGNHEL 79 (208)
T ss_pred CCCcEEEEECCCcCCCcCHHHHHHHHHHHHHHHHh---------------------------cCCeEEEeeCCCcH
Confidence 45689999999886555544443444333322211 12339999999995
No 68
>cd07407 MPP_YHR202W_N Saccharomyces cerevisiae YHR202W and related proteins, N-terminal metallophosphatase domain. YHR202W is an uncharacterized Saccharomyces cerevisiae UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at
Probab=94.57 E-value=0.8 Score=50.75 Aligned_cols=84 Identities=15% Similarity=0.214 Sum_probs=45.1
Q ss_pred ceEEEEcCCcEE--EEEEecCCCC---CC---C---HHHHHHHHHHHHhhcCCCCeEEEEecCCCCccccccCCcchhhH
Q 002007 523 SYFALQLPKGWW--VFGLDLALHC---DI---D---VYQFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNVSGKNV 591 (983)
Q Consensus 523 SYFAlrLp~~wW--LlGLDtql~g---dI---D---~~Q~~wF~~ll~~~v~~~d~VIL~tHeP~w~~~~~~~~~~~~~l 591 (983)
+|..++..+|.. ++|+=+.... .+ | ..|.+|+.+.+++ +.-|-||+++|-..-... +... .
T Consensus 137 ~y~i~~~~~G~kIgiiGltt~~~~~~~~~~f~d~~~~~~~~~v~~~l~~--~~~DvIIvlsH~G~~~d~-----~~~~-~ 208 (282)
T cd07407 137 RYRKFTTKHGLRVLAFGFLFDFKGAANGVTVQPVADVVQEPWFQDAINN--EDVDLILVLGHMPVRDDA-----EFKV-L 208 (282)
T ss_pred ceEEEEcCCCcEEEEEEEecccccCCCCcEEcCHHHHHHHHHHHHHHHh--cCCCEEEEEeCCCCCCCc-----cHHH-H
Confidence 576667654544 6666433211 11 2 2334577776653 346899999998864321 1111 1
Q ss_pred HHHHHhhhCCceeEEEcCccCCC
Q 002007 592 KHLICDYLKGRCKLRIAGDMHHY 614 (983)
Q Consensus 592 ~~Lie~~L~~RV~L~LAGHiHhY 614 (983)
...+.+.++...++.|+||.|..
T Consensus 209 ~~~la~~~~~id~~Ii~GHsH~~ 231 (282)
T cd07407 209 HDAIRKIFPDTPIQFLGGHSHVR 231 (282)
T ss_pred HHHHHHhCCCCCEEEEeCCcccc
Confidence 11223323333448999999974
No 69
>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain. UshA is a bacterial periplasmic enzyme with UDP-sugar hydrolase and dinucleoside-polyphosphate hydrolase activities associated with its N-terminal metallophosphatase domain, and 5'-nucleotidase activity associated with its C-terminal domain. UshA has been studied in Escherichia coli where it is expressed from the ushA gene as an immature precursor and proteolytically cleaved to form a mature product upon export to the periplasm. UshA hydrolyzes many different nucleotides and nucleotide derivitives and has been shown to degrade external UDP-glucose to uridine, glucose 1-phosphate and phosphate for utilization by the cell. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs
Probab=94.30 E-value=1.1 Score=49.52 Aligned_cols=50 Identities=18% Similarity=0.094 Sum_probs=29.5
Q ss_pred CCCeEEEEecCCCCccccccCCcchhhHHHHHHhhhCCceeEEEcCccCCCc
Q 002007 564 ERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYM 615 (983)
Q Consensus 564 ~~d~VIL~tHeP~w~~~~~~~~~~~~~l~~Lie~~L~~RV~L~LAGHiHhYq 615 (983)
.-|-||+++|-........... ......+.+++....++++|+||.|...
T Consensus 173 ~~D~VI~lsH~G~~~~~~~~~~--~~~~~~lA~~~~~~giD~IigGHsH~~~ 222 (285)
T cd07405 173 KPDIVIAATHMGHYDNGEHGSN--APGDVEMARALPAGGLDLIVGGHSQDPV 222 (285)
T ss_pred CCCEEEEEecccccCCcccccc--CchHHHHHHhcCCCCCCEEEeCCCCccc
Confidence 4589999999887533211111 0111233333323579999999999754
No 70
>cd07412 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain. YhcR is a Bacillus subtilis sugar-nonspecific endonuclease. It cleaves endonucleolytically to yield nucleotide 3'-monophosphate products, similar to Staphylococcus aureus micrococcal nuclease. YhcR appears to be located in the cell wall, and is thought to be a substrate for a Bacillus subtilis sortase. YhcR is the major calcium-activated nuclease of B. subtilis. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated wi
Probab=94.22 E-value=1.7 Score=47.84 Aligned_cols=52 Identities=12% Similarity=0.156 Sum_probs=29.7
Q ss_pred CCCeEEEEecCCCCccccccCCcc-hhhHHHHHHhhhCCceeEEEcCccCCCce
Q 002007 564 ERDSVIIMTHEPNWLLDWYFNNVS-GKNVKHLICDYLKGRCKLRIAGDMHHYMR 616 (983)
Q Consensus 564 ~~d~VIL~tHeP~w~~~~~~~~~~-~~~l~~Lie~~L~~RV~L~LAGHiHhYqR 616 (983)
.-|-||+++|-..-........+. ......++.+. ...++++|+||.|....
T Consensus 191 ~~D~IIvL~H~G~~~~~~~~~~~~~~~~~~~l~~~~-~~~iD~IlgGHsH~~~~ 243 (288)
T cd07412 191 GVDAIVVLAHEGGSTKGGDDTCSAASGPIADIVNRL-DPDVDVVFAGHTHQAYN 243 (288)
T ss_pred CCCEEEEEeCCCCCCCCCCccccccChhHHHHHhhc-CCCCCEEEeCccCcccc
Confidence 458999999987653322111000 01122333332 35799999999997654
No 71
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=93.77 E-value=0.069 Score=53.90 Aligned_cols=35 Identities=14% Similarity=0.200 Sum_probs=23.6
Q ss_pred CCeEEEEecCCCCccccccCCcchhhHHHHHHhhhCCceeEEEcCccCCCcee
Q 002007 565 RDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMRH 617 (983)
Q Consensus 565 ~d~VIL~tHeP~w~~~~~~~~~~~~~l~~Lie~~L~~RV~L~LAGHiHhYqR~ 617 (983)
+...|+++|.|..... . ..+.+++++||+|..+.-
T Consensus 106 ~~~~i~l~H~~~~~~~----------~--------~~~~d~vi~GHtH~~~~~ 140 (168)
T cd07390 106 GGRRVYLSHYPILEWN----------G--------LDRGSWNLHGHIHSNSPD 140 (168)
T ss_pred CCEEEEEEeCCcccCC----------C--------CCCCeEEEEeeeCCCCCC
Confidence 5688999997643211 0 136789999999975443
No 72
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=93.07 E-value=0.077 Score=53.68 Aligned_cols=15 Identities=33% Similarity=0.324 Sum_probs=12.3
Q ss_pred CccEEEEcccccCCC
Q 002007 422 RGDVLLIGGDLAYPN 436 (983)
Q Consensus 422 RgdfLVlgGDlvYP~ 436 (983)
++|.||++||++...
T Consensus 41 ~~d~lii~GDl~~~~ 55 (172)
T cd07391 41 GPERLIILGDLKHSF 55 (172)
T ss_pred CCCEEEEeCcccccc
Confidence 469999999999643
No 73
>PRK04036 DNA polymerase II small subunit; Validated
Probab=93.04 E-value=0.091 Score=62.41 Aligned_cols=54 Identities=19% Similarity=0.285 Sum_probs=28.5
Q ss_pred CCceEEEEEeccCCCCCCchH--HHHHhcccccccccCCCccccCCccEEEEcccccC
Q 002007 379 KEDLWFDFMADTGDGGNSSYS--VARLLAQPHIRVTRDDSVFTLPRGDVLLIGGDLAY 434 (983)
Q Consensus 379 d~~lwFd~VaDtGDG~dStYa--VA~LmAqp~L~v~~~~~~~~lPRgdfLVlgGDlvY 434 (983)
+++.++.+++|+.-|.+.... ...++. .+.-..+++.....+.+.+|++||++-
T Consensus 241 ~~~~~i~~ISDlHlgs~~~~~~~l~~li~--~L~g~~~~~~~~~~~~d~lVIaGDivd 296 (504)
T PRK04036 241 DEKVYAVFISDVHVGSKEFLEDAFEKFID--WLNGEVGNEEEIASRVKYLIIAGDLVD 296 (504)
T ss_pred CCccEEEEEcccCCCCcchhHHHHHHHHH--HHhCCCccchhhhhcCCEEEEeCcccc
Confidence 567899999999755432211 111111 111000000011346789999999983
No 74
>PRK09453 phosphodiesterase; Provisional
Probab=92.45 E-value=0.15 Score=51.82 Aligned_cols=13 Identities=15% Similarity=0.194 Sum_probs=11.2
Q ss_pred CceeEEEcCccCC
Q 002007 601 GRCKLRIAGDMHH 613 (983)
Q Consensus 601 ~RV~L~LAGHiHh 613 (983)
.+++++++||+|.
T Consensus 117 ~~~d~vi~GHtH~ 129 (182)
T PRK09453 117 HDGDVLVYGHTHI 129 (182)
T ss_pred cCCCEEEECCCCC
Confidence 3689999999995
No 75
>PRK09558 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed
Probab=92.45 E-value=1.6 Score=52.43 Aligned_cols=50 Identities=12% Similarity=0.080 Sum_probs=29.4
Q ss_pred CCCeEEEEecCCCCccccccCCcchhhHHHHHHhhhCCceeEEEcCccCCCc
Q 002007 564 ERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYM 615 (983)
Q Consensus 564 ~~d~VIL~tHeP~w~~~~~~~~~~~~~l~~Lie~~L~~RV~L~LAGHiHhYq 615 (983)
.-|-||+++|.-........ +..+.-..+.+++=...|+++|+||.|.+-
T Consensus 209 ~~D~IV~LsH~G~~~~~~~~--~~~~~d~~la~~~~~~~IDvIlgGHsH~~~ 258 (551)
T PRK09558 209 KPDVIIALTHMGHYDDGEHG--SNAPGDVEMARSLPAGGLDMIVGGHSQDPV 258 (551)
T ss_pred CCCEEEEEeccccccCCccC--CCCccHHHHHHhCCccCceEEEeCCCCccc
Confidence 35789999998875332111 011111234444312479999999999753
No 76
>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain. CWF19 cell cycle control protein (also known as CWF19-like 1 (CWF19L1) in Homo sapiens), N-terminal metallophosphatase domain. CWF19 contains C-terminal domains similar to that found in the CwfJ cell cycle control protein. The metallophosphatase domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site
Probab=91.90 E-value=0.53 Score=47.86 Aligned_cols=49 Identities=16% Similarity=0.081 Sum_probs=32.0
Q ss_pred CeEEEEecCCCCccccccC--------CcchhhHHHHHHhhhCCceeEEEcCccC-CCcee
Q 002007 566 DSVIIMTHEPNWLLDWYFN--------NVSGKNVKHLICDYLKGRCKLRIAGDMH-HYMRH 617 (983)
Q Consensus 566 d~VIL~tHeP~w~~~~~~~--------~~~~~~l~~Lie~~L~~RV~L~LAGHiH-hYqR~ 617 (983)
+.-||+||+|+..-....+ ....+.++++++++ |.+..+|||.| .|+|-
T Consensus 69 ~~DILlTh~wP~gi~~~~~~~~~~~~~~~GS~~i~~l~~~l---kPrYhf~gh~~~fyer~ 126 (150)
T cd07380 69 GVDILLTSEWPKGISKLSKVPFEETLLICGSDLIAELAKKL---KPRYHFAGLEGVFYERE 126 (150)
T ss_pred CCCEEECCCCchhhhhhCCCcccccccCCCCHHHHHHHHHc---CCCeEeecCCCceEeec
Confidence 4678999999876422111 11234455666665 88999999999 67763
No 77
>COG0737 UshA 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]
Probab=91.66 E-value=5.8 Score=47.23 Aligned_cols=119 Identities=18% Similarity=0.174 Sum_probs=63.8
Q ss_pred EeCCCCCCCCChhHHHHHhhccc--c-CCccc------cCCCcceEEEEcCC-cEEEEEEecCCC---------CCCC-H
Q 002007 489 IIPGNHDWFDGLNTFMRFICHKS--W-LGGWF------MPQKKSYFALQLPK-GWWVFGLDLALH---------CDID-V 548 (983)
Q Consensus 489 AIPGNHDWyDGL~aF~r~F~~r~--~-lgGW~------mpQ~~SYFAlrLp~-~wWLlGLDtql~---------gdID-~ 548 (983)
+..||||..-|++.+.++.-+-. + .+... .+.-.+|.-++.+. ..=++|+.+... .++. .
T Consensus 107 ~tiGNHEFd~g~~~l~~~~~~~~fp~l~aNv~~~~~~~~~~~~Py~I~~~~g~KIgiIG~~~~~~~~~~~~~~~~~~~f~ 186 (517)
T COG0737 107 MTLGNHEFDYGLEALARLLDEAKFPVLSANVYDKNSTGPPFFKPYAIKEVGGVKIGIIGLTTPTIPTWEKPNAIEGVTFR 186 (517)
T ss_pred EeecccccccCHHHHHHHHhccCCceEEeeeEecCCCCccCcCCeEEEecCCeEEEEEEecCCcccccccccccCCcEEc
Confidence 46799999999988888764322 1 11111 11223587777764 245778775321 1111 1
Q ss_pred HHHHHHHHHHHhhcCC--CCeEEEEecCCCCccccccCCcchhhHHHHHHhhhCCceeEEEcCccCCC
Q 002007 549 YQFKFFAELVKEQVGE--RDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHY 614 (983)
Q Consensus 549 ~Q~~wF~~ll~~~v~~--~d~VIL~tHeP~w~~~~~~~~~~~~~l~~Lie~~L~~RV~L~LAGHiHhY 614 (983)
...+...+.+.+ +.. -|-||+++|-+.-...........+ + ...+ ..+++.++||.|++
T Consensus 187 d~~e~~~~~i~e-lk~~~vD~iI~LsH~G~~~d~~~~~~~~~~-~-~~~~----~~iD~i~~GH~H~~ 247 (517)
T COG0737 187 DPIEAAKKYIPE-LKGEGVDVIIALSHLGIEDDLELASEVPGD-V-DVAV----PGIDLIIGGHSHTV 247 (517)
T ss_pred CHHHHHHHHHHH-HHhcCCCEEEEEeccCcCcccccccccccc-c-cccc----cCcceEeccCCccc
Confidence 123333333321 222 5899999999976543221111000 0 0001 23999999999975
No 78
>TIGR01530 nadN NAD pyrophosphatase/5'-nucleotidase NadN. This model describes NadN of Haemophilus influenzae and a small number of close homologs in pathogenic, Gram-negative bacteria. NadN is a periplasmic enzyme that cleaves NAD (nicotinamide adenine dinucleotide) to NMN (nicotinamide mononucleotide) and AMP. The NMN must be converted by a 5'-nucleotidase to nicotinamide riboside for import. NadN belongs a large family of 5'-nucleotidases and has NMN 5'-nucleotidase activity for NMN, AMP, etc.
Probab=91.48 E-value=2.2 Score=51.49 Aligned_cols=112 Identities=17% Similarity=0.170 Sum_probs=57.1
Q ss_pred EEEeCCCCCCCCChhHHHHHhhccc--cC-Ccc--c-----cCCCcceEEEEcCC-cEEEEEEecCCC--------CCC-
Q 002007 487 CYIIPGNHDWFDGLNTFMRFICHKS--WL-GGW--F-----MPQKKSYFALQLPK-GWWVFGLDLALH--------CDI- 546 (983)
Q Consensus 487 ifAIPGNHDWyDGL~aF~r~F~~r~--~l-gGW--~-----mpQ~~SYFAlrLp~-~wWLlGLDtql~--------gdI- 546 (983)
=.+++||||+=-|.+.+.+..-+.. ++ +.. . .+.-..|-.++... ..=++|+.+... .++
T Consensus 84 Da~~lGNHEFd~G~~~l~~~~~~~~fp~l~aNv~~~~~~~~~~~~~p~~i~~~~g~kIgiiGl~~~~~~~~~~~~~~~~~ 163 (550)
T TIGR01530 84 DFFTLGNHEFDAGNEGLKEFLEPLEIPVLSANVIPDAASILHGKWKPSAIFERAGEKIAIIGLDTVKKTVESSSPGKDIK 163 (550)
T ss_pred CEEEeccccccCCHHHHHHHHHhCCCCEEEEeeecCCCcccccCcCceEEEEECCeEEEEEEeecCcccccccCCCCceE
Confidence 4568999997557766655443211 11 111 0 01223565555532 366889865211 011
Q ss_pred --CHH--HHHHHHHHHHhhcCCCCeEEEEecCCCCccccccCCcchhhHHHHHHhhhCCceeEEEcCccCCCc
Q 002007 547 --DVY--QFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYM 615 (983)
Q Consensus 547 --D~~--Q~~wF~~ll~~~v~~~d~VIL~tHeP~w~~~~~~~~~~~~~l~~Lie~~L~~RV~L~LAGHiHhYq 615 (983)
|.- -.++..+ +++ +.-|-||+++|--.- .+ ..+.+++ ..++++|+||.|.+-
T Consensus 164 f~d~~~~~~~~v~~-Lk~--~g~D~II~lsH~g~~----------~d--~~la~~~--~~iD~IigGHsH~~~ 219 (550)
T TIGR01530 164 FIDEIAAAQIAANA-LKQ--QGINKIILLSHAGFE----------KN--CEIAQKI--NDIDVIVSGDSHYLL 219 (550)
T ss_pred ECCHHHHHHHHHHH-HHh--CCCCEEEEEecCCcH----------HH--HHHHhcC--CCCCEEEeCCCCccc
Confidence 211 1222222 221 224789999997521 01 1223333 369999999999853
No 79
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=91.35 E-value=0.2 Score=53.37 Aligned_cols=18 Identities=17% Similarity=0.115 Sum_probs=13.8
Q ss_pred CceeEEEcCccCCCceee
Q 002007 601 GRCKLRIAGDMHHYMRHS 618 (983)
Q Consensus 601 ~RV~L~LAGHiHhYqR~~ 618 (983)
...+++++||.|.+....
T Consensus 190 ~~p~vii~Gh~h~~~~~~ 207 (243)
T cd07386 190 EVPDILHTGHVHVYGVGV 207 (243)
T ss_pred CCCCEEEECCCCchHhEE
Confidence 367899999999765543
No 80
>TIGR01390 CycNucDiestase 2',3'-cyclic-nucleotide 2'-phosphodiesterase. 2',3'-cyclic-nucleotide 2'-phosphodiesterase is a bifunctional enzyme localized to the periplasm of Gram-negative bacteria. 2',3'-cyclic-nucleotide 2'-phosphodiesters are intermediates formed during the hydrolysis of RNA by the ribonuclease I, which is also found to the periplasm, and other enzymes of the RNAse T2 family. Bacteria are unable to transport 2',3'-cyclic-nucleotides into the cytoplasm. 2',3'-cyclic-nucleotide 2'-phosphodiesterase contains 2 active sites which catalyze the reactions that convert the 2',3'-cyclic-nucleotide into a 3'-nucleotide, which is then converted into nucleic acid and phosphate. Both final products can be transported into the cytoplasm. Thus, it has been suggested that 2',3'-cyclic-nucleotide 2'-phosphodiesterase has a 'scavenging' function. Experimental evidence indicates that 2',3'-cyclic-nucleotide 2'-phosphodiesterase enables Yersinia enterocolitica O:8 to grow on 2'3'-cAMP as a
Probab=88.78 E-value=6.5 Score=48.35 Aligned_cols=45 Identities=13% Similarity=0.105 Sum_probs=27.9
Q ss_pred CCeEEEEecCCCCccccccCCcchhhHHHHHHhhhCCceeEEEcCccCCC
Q 002007 565 RDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHY 614 (983)
Q Consensus 565 ~d~VIL~tHeP~w~~~~~~~~~~~~~l~~Lie~~L~~RV~L~LAGHiHhY 614 (983)
-|-||+++|...-.. .+ .+..+|....++++ ..|+++++||.|..
T Consensus 196 aDvII~LsH~G~~~d-~~--~~~~en~~~~l~~v--~gID~Il~GHsH~~ 240 (626)
T TIGR01390 196 ADIIVALAHSGISAD-PY--QPGAENSAYYLTKV--PGIDAVLFGHSHAV 240 (626)
T ss_pred CCEEEEEeccCcCCC-cc--ccccchHHHHHhcC--CCCCEEEcCCCCcc
Confidence 478999999875432 11 11223333333443 46999999999974
No 81
>cd08162 MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly relat
Probab=88.64 E-value=4.7 Score=45.38 Aligned_cols=38 Identities=16% Similarity=0.304 Sum_probs=25.3
Q ss_pred CCeEEEEecCCCCccccccCCcchhhHHHHHHhhhCCceeEEEcCccCCCc
Q 002007 565 RDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYM 615 (983)
Q Consensus 565 ~d~VIL~tHeP~w~~~~~~~~~~~~~l~~Lie~~L~~RV~L~LAGHiHhYq 615 (983)
-|-||+++|--.+..+ ..+.+++ ..++++|.||.|.+.
T Consensus 208 vD~II~LsH~g~~~~d-----------~~lA~~v--~gIDvIigGHsH~~l 245 (313)
T cd08162 208 INKIILLSHLQQISIE-----------QALAALL--SGVDVIIAGGSNTLL 245 (313)
T ss_pred CCEEEEEecccccchH-----------HHHHhcC--CCCCEEEeCCCCccC
Confidence 4789999998533211 1233333 359999999999864
No 82
>KOG3662 consensus Cell division control protein/predicted DNA repair exonuclease [Replication, recombination and repair]
Probab=88.12 E-value=0.79 Score=53.52 Aligned_cols=89 Identities=22% Similarity=0.231 Sum_probs=49.8
Q ss_pred CCCCceEEEEEecc---CCCCC-------CchHHHHHhcccccccccCCCccccCCccEEEEcccccCCC--CChhhhhc
Q 002007 377 SEKEDLWFDFMADT---GDGGN-------SSYSVARLLAQPHIRVTRDDSVFTLPRGDVLLIGGDLAYPN--PSAFTYER 444 (983)
Q Consensus 377 ~~d~~lwFd~VaDt---GDG~d-------StYaVA~LmAqp~L~v~~~~~~~~lPRgdfLVlgGDlvYP~--gs~e~Y~~ 444 (983)
++++.+....+||+ |+-.+ .+|-....|.+-.... +-.-.||+++++||+.=-+ ...+++..
T Consensus 44 ~~~n~~ki~~vaDPQilg~~~~~~~~~~Ldk~~~D~~lrr~f~~~------~~~lkPdvvffLGDLfDeG~~~~~eEf~~ 117 (410)
T KOG3662|consen 44 SNENSTKILLVADPQILGNWPKKFLVSWLDKYGNDWYLRRSFDMS------QWRLKPDVVFFLGDLFDEGQWAGDEEFKK 117 (410)
T ss_pred CCCCceEEEEecCchhcCCCCCccccchHHhhhhHHHHHHHHHHH------HhccCCCEEEEeccccccCccCChHHHHH
Confidence 34688999999999 52211 2222222233221111 1123569999999965422 34566665
Q ss_pred ccccchhhhcCCCCCCcccccccCCCCCCCCCcccccCCCCcEEEeCCCCCCC
Q 002007 445 RLFRPFEYALQPPPWYKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWF 497 (983)
Q Consensus 445 Rf~~Pye~Al~~~~~~~~~~~~~~~pelp~~~~~l~~~~gP~ifAIPGNHDWy 497 (983)
+..+ +...+++ | ...++.-||||||+=
T Consensus 118 ~~~R-fkkIf~~------------k-------------~~~~~~~i~GNhDIG 144 (410)
T KOG3662|consen 118 RYER-FKKIFGR------------K-------------GNIKVIYIAGNHDIG 144 (410)
T ss_pred HHHH-HHHhhCC------------C-------------CCCeeEEeCCccccc
Confidence 5533 5544432 0 234489999999973
No 83
>COG3540 PhoD Phosphodiesterase/alkaline phosphatase D [Inorganic ion transport and metabolism]
Probab=87.90 E-value=1.4 Score=52.45 Aligned_cols=47 Identities=19% Similarity=0.292 Sum_probs=32.9
Q ss_pred CCceEEEEEecc-CCCCC-CchHHHHHhcccccccccCCCccccCCccEEEEcccccCCCCCh
Q 002007 379 KEDLWFDFMADT-GDGGN-SSYSVARLLAQPHIRVTRDDSVFTLPRGDVLLIGGDLAYPNPSA 439 (983)
Q Consensus 379 d~~lwFd~VaDt-GDG~d-StYaVA~LmAqp~L~v~~~~~~~~lPRgdfLVlgGDlvYP~gs~ 439 (983)
...+.|...||+ |+|+. .-|+..+-|++. .+||+|+.||-+|-.|-.
T Consensus 137 ~~~i~~~~fa~ascQ~~~~gy~~aY~~ma~~--------------~~D~viH~GDyIYeyg~~ 185 (522)
T COG3540 137 GRAIRFVWFADASCQGWEIGYMTAYKTMAKE--------------EPDFVIHLGDYIYEYGPI 185 (522)
T ss_pred CCcchhhhhhhccccccccchhHHHHHHHhc--------------CCCEEEEcCCeeeccCCc
Confidence 345667777777 56665 345667777764 249999999999987543
No 84
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=87.87 E-value=6.5 Score=41.82 Aligned_cols=131 Identities=13% Similarity=0.080 Sum_probs=65.9
Q ss_pred CCcEEEeCCCCCCCCChhHHHHHhh--cccc---CC-ccccCCCcceEEEEcCC-cEEEEEEecCCCCCCC---------
Q 002007 484 GPQCYIIPGNHDWFDGLNTFMRFIC--HKSW---LG-GWFMPQKKSYFALQLPK-GWWVFGLDLALHCDID--------- 547 (983)
Q Consensus 484 gP~ifAIPGNHDWyDGL~aF~r~F~--~r~~---lg-GW~mpQ~~SYFAlrLp~-~wWLlGLDtql~gdID--------- 547 (983)
+..+..+-+||++=-|.+++.+..- ++.. .+ +-...+...|..++.+. ..=++|+-+.......
T Consensus 77 G~d~~tlaNNH~fD~G~~gl~~t~~~l~~~~i~~~g~~~~~~~~~~~~i~~~~g~kVg~ig~t~~~~~~~~~~~~~~~~~ 156 (239)
T cd07381 77 GFDVVSLANNHTLDYGEEGLLDTLDALDEAGIAHAGAGRNLEEARRPAILEVNGIKVAFLAYTYGTNGIPLAAGARPGGV 156 (239)
T ss_pred CCCEEEcccccccccchHHHHHHHHHHHHcCCceeECCCCHHHhcCcEEEEECCEEEEEEEEECCCCCCcCcccCCcccc
Confidence 5667777779998767776666431 1111 11 11111112355555543 2456666543322111
Q ss_pred -HHHHHHHHHHHHhhcCCCCeEEEEecCCCCccccccCCcchhhHHHHHHhhhCCceeEEEcCccCCCceeee
Q 002007 548 -VYQFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMRHSY 619 (983)
Q Consensus 548 -~~Q~~wF~~ll~~~v~~~d~VIL~tHeP~w~~~~~~~~~~~~~l~~Lie~~L~~RV~L~LAGHiHhYqR~~~ 619 (983)
..-.+-+.+.+++..+..|-||+.+|--. +. +.......+.+.+.+....+++++.||.|..|..+.
T Consensus 157 ~~~~~~~~~~~i~~lr~~~D~vIv~~H~G~---e~--~~~p~~~~~~la~~l~~~G~D~IiG~H~Hv~q~~E~ 224 (239)
T cd07381 157 NPLDLERIAADIAEAKKKADIVIVSLHWGV---EY--SYYPTPEQRELARALIDAGADLVIGHHPHVLQGIEI 224 (239)
T ss_pred CccCHHHHHHHHHHHhhcCCEEEEEecCcc---cC--CCCCCHHHHHHHHHHHHCCCCEEEcCCCCcCCCeEE
Confidence 00012233333221123688999999422 11 111122233444444455799999999999887764
No 85
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=87.38 E-value=12 Score=39.95 Aligned_cols=132 Identities=9% Similarity=0.056 Sum_probs=64.3
Q ss_pred CCcEEEeCCCCCCCCChhHHHHHhhc--cc---cCCc-cccCCCcceEEEEcCC-cEEEEEEecCCCCC-----------
Q 002007 484 GPQCYIIPGNHDWFDGLNTFMRFICH--KS---WLGG-WFMPQKKSYFALQLPK-GWWVFGLDLALHCD----------- 545 (983)
Q Consensus 484 gP~ifAIPGNHDWyDGL~aF~r~F~~--r~---~lgG-W~mpQ~~SYFAlrLp~-~wWLlGLDtql~gd----------- 545 (983)
+..+..+-+||+.=-|.+++.+..-. +. +.+. -...+...|..++.+. ..=++|+-+.....
T Consensus 73 G~d~~~laNNH~fD~G~~gl~~t~~~l~~a~i~~~g~~~~~~~~~~~~i~~~~g~kIg~ig~t~~~~~~~~~~~~~~g~~ 152 (239)
T smart00854 73 GFDVVSLANNHSLDYGEEGLLDTLAALDAAGIAHVGAGRNLAEARKPAIVEVKGIKIALLAYTYGTNNGWAASKDRPGVA 152 (239)
T ss_pred CCCEEEeccCcccccchHHHHHHHHHHHHCCCCEeeCCCChHHhhCcEEEEECCEEEEEEEEEcCCCCCcccCCCCCCee
Confidence 45566677799987777776664421 11 1211 1111122355555543 24466664322110
Q ss_pred -CCHHHHHHHHHHHHhhcCCCCeEEEEecCCCCccccccCCcchhhHHHHHHhhhCCceeEEEcCccCCCceeeec
Q 002007 546 -IDVYQFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMRHSYV 620 (983)
Q Consensus 546 -ID~~Q~~wF~~ll~~~v~~~d~VIL~tHeP~w~~~~~~~~~~~~~l~~Lie~~L~~RV~L~LAGHiHhYqR~~~~ 620 (983)
++....+=+.+.+++..+..|-||+++|--.-. . ..+ .+..+.+.+++....++++++||.|..+..+..
T Consensus 153 ~~~~~~~~~i~~~i~~lr~~~D~vIv~~H~G~e~-~---~~p-~~~~~~~A~~l~~~G~DvIiG~H~H~~~~~e~~ 223 (239)
T smart00854 153 LLPDLDREKILADIARARKKADVVIVSLHWGVEY-Q---YEP-TDEQRELAHALIDAGADVVIGHHPHVLQPIEIY 223 (239)
T ss_pred ecCcCCHHHHHHHHHHHhccCCEEEEEecCcccc-C---CCC-CHHHHHHHHHHHHcCCCEEEcCCCCcCCceEEE
Confidence 110001112222211112357899999865321 1 111 122233444444457999999999998877644
No 86
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=86.99 E-value=15 Score=40.87 Aligned_cols=49 Identities=14% Similarity=0.178 Sum_probs=31.5
Q ss_pred HHHHHHHhhcCCCCeEEEEecCCCCccccccCCcchhhHHHHHHhhhCCceeEEEcCccCC
Q 002007 553 FFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHH 613 (983)
Q Consensus 553 wF~~ll~~~v~~~d~VIL~tHeP~w~~~~~~~~~~~~~l~~Lie~~L~~RV~L~LAGHiHh 613 (983)
-.++++++...+.|-+||..|.-. + .....+..++.+||++++.-|+|=
T Consensus 132 ~~d~~i~~lk~~~d~IIVd~Haea----------t--sEK~a~~~~ldg~vsaVvGtHtHV 180 (266)
T TIGR00282 132 VLKELINMLKKDCDLIFVDFHAET----------T--SEKNAFGMAFDGYVTAVVGTHTHV 180 (266)
T ss_pred HHHHHHHhhhcCCCEEEEEeCCCC----------H--HHHHHHHHHhCCCccEEEeCCCCC
Confidence 344444422223578999998654 1 123335666688999999999994
No 87
>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only]
Probab=86.82 E-value=2.1 Score=44.74 Aligned_cols=43 Identities=28% Similarity=0.377 Sum_probs=28.7
Q ss_pred CCCCeEEEEecCCCCccccccCCcchhhHHHHHHhhhCCceeEEEcCccCC
Q 002007 563 GERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHH 613 (983)
Q Consensus 563 ~~~d~VIL~tHeP~w~~~~~~~~~~~~~l~~Lie~~L~~RV~L~LAGHiHh 613 (983)
.-++..|++.|-|.=..+. . +.+.+ +.++..+|++.|-||.|.
T Consensus 105 e~dg~~~~LsHyP~~~~~~--~---~~~~r---~~y~~~~~~llIHGH~H~ 147 (186)
T COG4186 105 EWDGEDVYLSHYPRPGQDH--P---GMESR---FDYLRLRVPLLIHGHLHS 147 (186)
T ss_pred eECCeEEEEEeCCCCCCCC--c---chhhh---HHHHhccCCeEEeccccc
Confidence 3467889999998743331 1 11121 344578999999999997
No 88
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=85.83 E-value=4 Score=42.55 Aligned_cols=43 Identities=16% Similarity=0.134 Sum_probs=26.4
Q ss_pred CCCCeEEEEecCCCCccccccCCcchhhHHHHHHhhhCCceeEEEcCccCC
Q 002007 563 GERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHH 613 (983)
Q Consensus 563 ~~~d~VIL~tHeP~w~~~~~~~~~~~~~l~~Lie~~L~~RV~L~LAGHiHh 613 (983)
.-++..|.++|-=.+.... +...++.+-++ ..+++++.||+|-
T Consensus 78 ~~~g~ki~l~HGh~~~~~~-----~~~~l~~la~~---~~~Dvli~GHTH~ 120 (172)
T COG0622 78 EVGGVKIFLTHGHLYFVKT-----DLSLLEYLAKE---LGADVLIFGHTHK 120 (172)
T ss_pred EECCEEEEEECCCcccccc-----CHHHHHHHHHh---cCCCEEEECCCCc
Confidence 3467899999974433110 12233333233 4799999999995
No 89
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=84.37 E-value=1.3 Score=46.25 Aligned_cols=17 Identities=35% Similarity=0.429 Sum_probs=13.4
Q ss_pred CccEEEEcccccCCCCC
Q 002007 422 RGDVLLIGGDLAYPNPS 438 (983)
Q Consensus 422 RgdfLVlgGDlvYP~gs 438 (983)
+.|.++++||++.-++.
T Consensus 28 ~~d~~~~~GD~v~~g~~ 44 (207)
T cd07424 28 ARDRLISVGDLIDRGPE 44 (207)
T ss_pred CCCEEEEeCCcccCCCC
Confidence 46999999998875543
No 90
>PHA02239 putative protein phosphatase
Probab=84.29 E-value=1.1 Score=48.54 Aligned_cols=45 Identities=9% Similarity=0.097 Sum_probs=24.6
Q ss_pred EEEEEeccCCCCCCchHHHHHhcccccccccCCCccccCCccEEEEcccccCCCCCh
Q 002007 383 WFDFMADTGDGGNSSYSVARLLAQPHIRVTRDDSVFTLPRGDVLLIGGDLAYPNPSA 439 (983)
Q Consensus 383 wFd~VaDtGDG~dStYaVA~LmAqp~L~v~~~~~~~~lPRgdfLVlgGDlvYP~gs~ 439 (983)
.+.+++|.= |. .....+++.+-..+ ....|.|+++||++--++..
T Consensus 2 ~~~~IsDIH-G~--~~~l~~ll~~i~~~---------~~~~d~li~lGD~iDrG~~s 46 (235)
T PHA02239 2 AIYVVPDIH-GE--YQKLLTIMDKINNE---------RKPEETIVFLGDYVDRGKRS 46 (235)
T ss_pred eEEEEECCC-CC--HHHHHHHHHHHhhc---------CCCCCEEEEecCcCCCCCCh
Confidence 467899994 21 12344444332100 11248899999977655443
No 91
>PRK09420 cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; Reviewed
Probab=83.41 E-value=13 Score=45.98 Aligned_cols=45 Identities=18% Similarity=0.173 Sum_probs=27.1
Q ss_pred CCeEEEEecCCCCccccccCCcchhhHHHHHHhhhCCceeEEEcCccCCC
Q 002007 565 RDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHY 614 (983)
Q Consensus 565 ~d~VIL~tHeP~w~~~~~~~~~~~~~l~~Lie~~L~~RV~L~LAGHiHhY 614 (983)
-|-||+++|--.-. +.+ .+..+|....++++ ..++++|+||.|..
T Consensus 219 aDvII~LsH~G~~~-d~~--~~~aen~~~~l~~v--~gID~Il~GHsH~~ 263 (649)
T PRK09420 219 ADIVVAIPHSGISA-DPY--KAMAENSVYYLSEV--PGIDAIMFGHSHAV 263 (649)
T ss_pred CCEEEEEecCCcCC-CCc--cccccchhHHHhcC--CCCCEEEeCCCCcc
Confidence 47888999987532 211 11223332333443 46999999999974
No 92
>PRK09418 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=82.79 E-value=17 Score=46.21 Aligned_cols=46 Identities=15% Similarity=0.146 Sum_probs=28.1
Q ss_pred CCeEEEEecCCCCccccccCCcchhhHHHHHHhhhCCceeEEEcCccCCCc
Q 002007 565 RDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYM 615 (983)
Q Consensus 565 ~d~VIL~tHeP~w~~~~~~~~~~~~~l~~Lie~~L~~RV~L~LAGHiHhYq 615 (983)
-|-||+++|.-.-.. ... ...++....++++ ..|+++|+||.|+.-
T Consensus 245 aDvIIaLsH~G~~~d-~~~--~~~ena~~~l~~v--~gID~IlgGHsH~~~ 290 (780)
T PRK09418 245 ADVIVALAHSGVDKS-GYN--VGMENASYYLTEV--PGVDAVLMGHSHTEV 290 (780)
T ss_pred CCEEEEEeccCcccc-ccc--ccchhhhHHHhcC--CCCCEEEECCCCCcc
Confidence 478999999875432 111 1123332333443 469999999999754
No 93
>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate
Probab=81.05 E-value=1.9 Score=44.63 Aligned_cols=17 Identities=29% Similarity=0.434 Sum_probs=12.8
Q ss_pred CccEEEEcccccCCCCC
Q 002007 422 RGDVLLIGGDLAYPNPS 438 (983)
Q Consensus 422 RgdfLVlgGDlvYP~gs 438 (983)
..|.+|++||++--++.
T Consensus 24 ~~d~li~lGD~vdrg~~ 40 (225)
T cd00144 24 PNDKLIFLGDYVDRGPD 40 (225)
T ss_pred CCCEEEEECCEeCCCCC
Confidence 45889999997765543
No 94
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=79.91 E-value=2 Score=46.23 Aligned_cols=16 Identities=31% Similarity=0.356 Sum_probs=12.7
Q ss_pred CccEEEEcccccCCCC
Q 002007 422 RGDVLLIGGDLAYPNP 437 (983)
Q Consensus 422 RgdfLVlgGDlvYP~g 437 (983)
++|.+++.||+.....
T Consensus 58 ~~d~vIi~GDl~h~~~ 73 (225)
T TIGR00024 58 GIEALIINGDLKHEFK 73 (225)
T ss_pred CCCEEEEcCccccccC
Confidence 4689999999986544
No 95
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=74.99 E-value=31 Score=45.55 Aligned_cols=48 Identities=15% Similarity=0.073 Sum_probs=28.9
Q ss_pred CCeEEEEecCCCCccccccCCcchhhHHHHHHhhhCCceeEEEcCccCCCce
Q 002007 565 RDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMR 616 (983)
Q Consensus 565 ~d~VIL~tHeP~w~~~~~~~~~~~~~l~~Lie~~L~~RV~L~LAGHiHhYqR 616 (983)
-|-||+++|-..=.... ..+ ..+....+.+++ ..++++|+||.|....
T Consensus 235 aDvII~l~H~G~~~~~~-~~~-~en~~~~la~~~--~gID~Il~GHsH~~~~ 282 (1163)
T PRK09419 235 ADVIVALAHSGIESEYQ-SSG-AEDSVYDLAEKT--KGIDAIVAGHQHGLFP 282 (1163)
T ss_pred CCEEEEEeccCcCCCCC-CCC-cchHHHHHHHhC--CCCcEEEeCCCccccc
Confidence 57899999988532211 111 112233444443 4699999999998643
No 96
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]
Probab=74.19 E-value=2.3 Score=50.61 Aligned_cols=93 Identities=20% Similarity=0.396 Sum_probs=50.4
Q ss_pred CCCceEEEEEeccCCCCCCchHHHHHhc-ccccccccCCCccccCCccEEEEccccc-----CCCCChhhhhcccccchh
Q 002007 378 EKEDLWFDFMADTGDGGNSSYSVARLLA-QPHIRVTRDDSVFTLPRGDVLLIGGDLA-----YPNPSAFTYERRLFRPFE 451 (983)
Q Consensus 378 ~d~~lwFd~VaDtGDG~dStYaVA~LmA-qp~L~v~~~~~~~~lPRgdfLVlgGDlv-----YP~gs~e~Y~~Rf~~Pye 451 (983)
.++++...+++|.=-|.- ++..-.-+. -.-+. +.....+|-+.++++||++ ||+-..+-.-.--+++|+
T Consensus 222 ~~e~v~v~~isDih~GSk-~F~~~~f~~fi~wl~----g~~~~a~~vkyliiagd~VDGigiYpgq~~eL~i~di~~qy~ 296 (481)
T COG1311 222 GDERVYVALISDIHRGSK-EFLEDEFEKFIDWLN----GPGDLASRVKYLIIAGDVVDGIGIYPGQEEELVIADIYEQYE 296 (481)
T ss_pred CCcceEEEEEeeeecccH-HHHHHHHHHHHHHhc----CCcccccceEEEEEecccccccccccCcccccccccchHHHH
Confidence 467788899999855421 111111110 00010 1111467788999999985 776554433333335565
Q ss_pred hhcCCCCCCcccccccCCCCCCCCCcccccCCCCcEEEeCCCCCC
Q 002007 452 YALQPPPWYKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDW 496 (983)
Q Consensus 452 ~Al~~~~~~~~~~~~~~~pelp~~~~~l~~~~gP~ifAIPGNHDW 496 (983)
.+-. .+ +..| .-+.++++|||||-
T Consensus 297 ~~A~--------~L----~~vp---------~~I~v~i~PGnhDa 320 (481)
T COG1311 297 ELAE--------FL----DQVP---------EHIKVFIMPGNHDA 320 (481)
T ss_pred HHHH--------HH----hhCC---------CCceEEEecCCCCc
Confidence 4321 11 1222 34679999999996
No 97
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]
Probab=73.85 E-value=2.4 Score=46.41 Aligned_cols=47 Identities=32% Similarity=0.345 Sum_probs=32.6
Q ss_pred CccEEEEcccccCCCCChhhhhcccccchhhhcCCCCCCcccccccCCCCCCCCCcccccCCCCcEEEeCCCCCC
Q 002007 422 RGDVLLIGGDLAYPNPSAFTYERRLFRPFEYALQPPPWYKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDW 496 (983)
Q Consensus 422 RgdfLVlgGDlvYP~gs~e~Y~~Rf~~Pye~Al~~~~~~~~~~~~~~~pelp~~~~~l~~~~gP~ifAIPGNHDW 496 (983)
+++-||+.||+-...+-....+.++++-+..++. ...+..|+||||=
T Consensus 63 ~p~~lIilGD~KH~~~~~~~~e~~~~~~f~~~~~----------------------------~~evi~i~GNHD~ 109 (235)
T COG1407 63 GPKRLIILGDLKHEFGKSLRQEKEEVREFLELLD----------------------------EREVIIIRGNHDN 109 (235)
T ss_pred CCCEEEEcCccccccCccccccHHHHHHHHHHhc----------------------------cCcEEEEeccCCC
Confidence 4578999999877666545555555555555431 2249999999995
No 98
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed
Probab=71.12 E-value=5.2 Score=44.45 Aligned_cols=18 Identities=33% Similarity=0.529 Sum_probs=14.2
Q ss_pred CccEEEEcccccCCCCCh
Q 002007 422 RGDVLLIGGDLAYPNPSA 439 (983)
Q Consensus 422 RgdfLVlgGDlvYP~gs~ 439 (983)
..|.++++||++--++..
T Consensus 28 ~~D~li~lGDlVdrGp~s 45 (275)
T PRK00166 28 AKDTLWLVGDLVNRGPDS 45 (275)
T ss_pred CCCEEEEeCCccCCCcCH
Confidence 458899999988866644
No 99
>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain. PA3087 is an uncharacterized protein from Pseudomonas aeruginosa with a metallophosphatase domain that belongs to the phosphoprotein phosphatase (PPP) family. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of
Probab=68.20 E-value=4.7 Score=42.99 Aligned_cols=17 Identities=24% Similarity=0.309 Sum_probs=12.0
Q ss_pred CccEEEEcccccCCCCC
Q 002007 422 RGDVLLIGGDLAYPNPS 438 (983)
Q Consensus 422 RgdfLVlgGDlvYP~gs 438 (983)
..|.+|++||++=-++.
T Consensus 33 ~~d~lvflGD~IDRGp~ 49 (222)
T cd07413 33 PERQVVFLGDLIDRGPE 49 (222)
T ss_pred CCCEEEEeCcccCCCCC
Confidence 45789999996643443
No 100
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=66.31 E-value=3.9 Score=43.48 Aligned_cols=19 Identities=32% Similarity=0.496 Sum_probs=14.8
Q ss_pred CCccEEEEcccccCCCCCh
Q 002007 421 PRGDVLLIGGDLAYPNPSA 439 (983)
Q Consensus 421 PRgdfLVlgGDlvYP~gs~ 439 (983)
+..|.++.+||++.-++..
T Consensus 41 ~~~d~l~~lGD~vdrG~~~ 59 (218)
T PRK09968 41 PETDLLISVGDNIDRGPES 59 (218)
T ss_pred CCCCEEEECCCCcCCCcCH
Confidence 3568999999999866654
No 101
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=61.28 E-value=1.1e+02 Score=32.92 Aligned_cols=133 Identities=13% Similarity=0.085 Sum_probs=72.6
Q ss_pred CCCcEEEeCCCCCCCCChhHHHHHh---hccc--cCC-ccccCCCcceEEEEcCC-cEEEEEEecCCCCC----------
Q 002007 483 DGPQCYIIPGNHDWFDGLNTFMRFI---CHKS--WLG-GWFMPQKKSYFALQLPK-GWWVFGLDLALHCD---------- 545 (983)
Q Consensus 483 ~gP~ifAIPGNHDWyDGL~aF~r~F---~~r~--~lg-GW~mpQ~~SYFAlrLp~-~wWLlGLDtql~gd---------- 545 (983)
-+..+..+--||-+=-|.+++.+.. -+.. ..| |....+.+.+..++.+. ..-+++.-....+.
T Consensus 74 ~G~d~vslANNH~~D~G~~gl~~Tl~~L~~~gi~~~Gag~~~~~a~~p~i~~~~g~kia~l~~t~~~~~~~~~~~~~~~~ 153 (250)
T PF09587_consen 74 AGFDVVSLANNHIFDYGEEGLLDTLEALDKAGIPYVGAGRNLEEARRPAIIEVNGVKIAFLGYTDGENGYSSANGNRPYG 153 (250)
T ss_pred cCCCEEEecCCCCccccHHHHHHHHHHHHHCCCcEeECcCChHHhcCeEEEEECCEEEEEEEEEcCCCCCcccccccccc
Confidence 3566888989996544555555543 2111 122 22333333455566643 24455554332110
Q ss_pred -----------CCHHHHHHHHHHHHhhcCCCCeEEEEecCCCCccccccCCcchhhHHHHHHhhhCCceeEEEcCccCCC
Q 002007 546 -----------IDVYQFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHY 614 (983)
Q Consensus 546 -----------ID~~Q~~wF~~ll~~~v~~~d~VIL~tHeP~w~~~~~~~~~~~~~l~~Lie~~L~~RV~L~LAGHiHhY 614 (983)
..+++.+.+.+.+++..+..|-|||+.|- .... ...+ .+..+.+.+.++...+++++++|.|..
T Consensus 154 ~~~~~~~~~~~~~~~~~~~i~~~i~~~r~~~D~vIv~~Hw-G~e~---~~~p-~~~q~~~a~~lidaGaDiIiG~HpHv~ 228 (250)
T PF09587_consen 154 FSYRPDKAGLNPNRPGIERIKEDIREARKKADVVIVSLHW-GIEY---ENYP-TPEQRELARALIDAGADIIIGHHPHVI 228 (250)
T ss_pred ccccccccccccccchHHHHHHHHHHHhcCCCEEEEEecc-CCCC---CCCC-CHHHHHHHHHHHHcCCCEEEeCCCCcc
Confidence 01233466666665433557899999986 1111 1112 233444555555557999999999998
Q ss_pred ceeeec
Q 002007 615 MRHSYV 620 (983)
Q Consensus 615 qR~~~~ 620 (983)
|.++.-
T Consensus 229 q~~E~y 234 (250)
T PF09587_consen 229 QPVEIY 234 (250)
T ss_pred cceEEE
Confidence 887754
No 102
>PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function.
Probab=58.55 E-value=24 Score=38.76 Aligned_cols=21 Identities=38% Similarity=0.588 Sum_probs=17.7
Q ss_pred CcEEEeCCCCCCCCChhHHHHHhhc
Q 002007 485 PQCYIIPGNHDWFDGLNTFMRFICH 509 (983)
Q Consensus 485 P~ifAIPGNHDWyDGL~aF~r~F~~ 509 (983)
+.++.|||| .|+.+|..-|++
T Consensus 3 ~li~~IPGN----PGlv~fY~~Fl~ 23 (266)
T PF10230_consen 3 PLIVFIPGN----PGLVEFYEEFLS 23 (266)
T ss_pred EEEEEECCC----CChHHHHHHHHH
Confidence 469999999 899998887764
No 103
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=57.32 E-value=79 Score=38.91 Aligned_cols=51 Identities=31% Similarity=0.415 Sum_probs=33.0
Q ss_pred CCceEEEEEeccCC---------CCCCchHHHHHh--cccccccccCCCccccCCccEEEEcccccCCC-CChhhh
Q 002007 379 KEDLWFDFMADTGD---------GGNSSYSVARLL--AQPHIRVTRDDSVFTLPRGDVLLIGGDLAYPN-PSAFTY 442 (983)
Q Consensus 379 d~~lwFd~VaDtGD---------G~dStYaVA~Lm--Aqp~L~v~~~~~~~~lPRgdfLVlgGDlvYP~-gs~e~Y 442 (983)
++.+.+.+-.|.-= |.||-.+-..+| ||.. +-|+|++|||+..-+ ||.+..
T Consensus 11 entirILVaTD~HlGY~EkD~vrg~DSf~tFeEIl~iA~e~-------------~VDmiLlGGDLFHeNkPSr~~L 73 (646)
T KOG2310|consen 11 ENTIRILVATDNHLGYGEKDAVRGDDSFVTFEEILEIAQEN-------------DVDMILLGGDLFHENKPSRKTL 73 (646)
T ss_pred ccceEEEEeecCccccccCCcccccchHHHHHHHHHHHHhc-------------CCcEEEecCcccccCCccHHHH
Confidence 57788888888722 334444445543 3332 459999999998866 666544
No 104
>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain. ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa
Probab=56.48 E-value=10 Score=41.87 Aligned_cols=19 Identities=37% Similarity=0.599 Sum_probs=14.4
Q ss_pred CCccEEEEcccccCCCCCh
Q 002007 421 PRGDVLLIGGDLAYPNPSA 439 (983)
Q Consensus 421 PRgdfLVlgGDlvYP~gs~ 439 (983)
|..|.++++||++--++..
T Consensus 25 ~~~D~Li~lGDlVdRGp~s 43 (257)
T cd07422 25 PAKDRLWLVGDLVNRGPDS 43 (257)
T ss_pred CCCCEEEEecCcCCCCcCH
Confidence 3458999999988766544
No 105
>KOG4419 consensus 5' nucleotidase [Nucleotide transport and metabolism]
Probab=53.67 E-value=56 Score=40.36 Aligned_cols=126 Identities=19% Similarity=0.232 Sum_probs=72.3
Q ss_pred ccCCCCcEEEeCCCCCCCCC----hhH--HHHHhhccccC------Cc--cccCCCcceEEEEcCCcEEEEEEec-----
Q 002007 480 KQYDGPQCYIIPGNHDWFDG----LNT--FMRFICHKSWL------GG--WFMPQKKSYFALQLPKGWWVFGLDL----- 540 (983)
Q Consensus 480 ~~~~gP~ifAIPGNHDWyDG----L~a--F~r~F~~r~~l------gG--W~mpQ~~SYFAlrLp~~wWLlGLDt----- 540 (983)
..|+.+ ..|||+.|.+ ++. |+..+..+-.. .+ =..|--.+|+.+-.|++..+..+..
T Consensus 121 ~~yD~l----~lGNHEl~~~~ve~l~~~~f~~~~k~~~la~Nv~~~~~~~~~~p~~~~~~t~~t~~~~~v~~vG~~~~~f 196 (602)
T KOG4419|consen 121 MPYDIL----TLGNHELYQANVENLTEEYFLPAWKGPYLASNVQIFDSSNSFVPFGLEYATFLTPHGVVVLAVGFLCASF 196 (602)
T ss_pred Cccchh----hhcchhhhhhhhhccchhhhhhhhccceeecceEEecCchhhccccccceEEeccCceEEEEEEEeeccc
Confidence 344556 7899999876 222 44433222111 11 1123334688888888866655533
Q ss_pred CCCC-CC-C-----HHHHHHHHHHHHhhcCCCCeEEEEecCCCCccccccCCcchhhHHHHHHhhhCCceeE-EEcCccC
Q 002007 541 ALHC-DI-D-----VYQFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKL-RIAGDMH 612 (983)
Q Consensus 541 ql~g-dI-D-----~~Q~~wF~~ll~~~v~~~d~VIL~tHeP~w~~~~~~~~~~~~~l~~Lie~~L~~RV~L-~LAGHiH 612 (983)
+.+. +. + -.|.+|..+.++. ++-+-+|++.|-|.=.. .+.+.+-..+++..+. +++ +|.||.|
T Consensus 197 ~~~~n~~~v~~veei~~~~~~~~m~~~--~~idlii~lgH~~~~~~------~e~~~~~~~ir~~~p~-t~IqviGGHsh 267 (602)
T KOG4419|consen 197 SGAANRTVVVPVEEITQSEWEQDMVNT--TDIDLIIALGHSPVRDD------DEWKSLHAEIRKVHPN-TPIQVIGGHSH 267 (602)
T ss_pred cccCCCcccccHHHHhccchHHHHhhc--cCccEEEEecccccccc------hhhhhHHHHHhhhCCC-CceEEECchhh
Confidence 2111 11 1 2588999998864 66678888889885221 2233333334554433 556 9999999
Q ss_pred --CCceee
Q 002007 613 --HYMRHS 618 (983)
Q Consensus 613 --hYqR~~ 618 (983)
.|.++.
T Consensus 268 ird~a~~d 275 (602)
T KOG4419|consen 268 IRDFAVYD 275 (602)
T ss_pred hhhhhhcC
Confidence 577763
No 106
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=53.30 E-value=8.1 Score=40.93 Aligned_cols=44 Identities=23% Similarity=0.228 Sum_probs=25.4
Q ss_pred EEEEEeccCCCCCCchHHHHHhcccccccccCCCccccCCccEEEEcccccCCCCCh
Q 002007 383 WFDFMADTGDGGNSSYSVARLLAQPHIRVTRDDSVFTLPRGDVLLIGGDLAYPNPSA 439 (983)
Q Consensus 383 wFd~VaDtGDG~dStYaVA~LmAqp~L~v~~~~~~~~lPRgdfLVlgGDlvYP~gs~ 439 (983)
.+.+|+|.=.- -.+..+++++-. . .++.|.|+++||++=-++..
T Consensus 18 ri~vigDIHG~---~~~L~~lL~~i~--~--------~~~~D~li~lGDlvDrGp~s 61 (218)
T PRK11439 18 HIWLVGDIHGC---FEQLMRKLRHCR--F--------DPWRDLLISVGDLIDRGPQS 61 (218)
T ss_pred eEEEEEcccCC---HHHHHHHHHhcC--C--------CcccCEEEEcCcccCCCcCH
Confidence 57899999311 122333443321 0 13458899999988555544
No 107
>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain. PolD2 (DNA polymerase delta, subunit 2) is an auxiliary subunit of the eukaryotic DNA polymerase delta (PolD) complex thought to play a regulatory role and to serve as a scaffold for PolD assembly by interacting simultaneously with all of the other three subunits. PolD2 is catalytically inactive and lacks the active site residues required for phosphoesterase activity in other members of this superfamily. PolD2 is also involved in the recruitment of several proteins regulating DNA metabolism, including p21, PDIP1, PDIP38, PDIP46, and WRN. Human PolD consists of four subunits: p125 (PolD1), p50 (PolD2), p66(PolD3), and p12(PolD4). PolD is one of three major replicases in eukaryotes. PolD also plays an essential role in translesion DNA synthesis, homologous recombination, and DNA repair. Within the PolD complex, PolD2 tightly associates with PolD3. PolD2 belongs to the metallophosphatase (MPP) superfamily
Probab=52.71 E-value=18 Score=40.12 Aligned_cols=56 Identities=16% Similarity=0.185 Sum_probs=30.9
Q ss_pred EEEEEeccCCCCCCchHHHHHhcccccccccC--CCccccCCccEEEEcccccCCCCC
Q 002007 383 WFDFMADTGDGGNSSYSVARLLAQPHIRVTRD--DSVFTLPRGDVLLIGGDLAYPNPS 438 (983)
Q Consensus 383 wFd~VaDtGDG~dStYaVA~LmAqp~L~v~~~--~~~~~lPRgdfLVlgGDlvYP~gs 438 (983)
++.+|+|++=|.+.....+-.+-+..|+-..+ ++.....+-.-||++||.+-+.+.
T Consensus 1 ~i~~vSgL~ig~~~~~~~~l~ll~d~L~G~~g~~~~~~~~s~I~rlIIaGn~v~~~~~ 58 (257)
T cd07387 1 YIALVSGLGLGGNAESSLSLQLLVDWLTGQLGDEEEQSSASSIVRLIIAGNSLSKSTQ 58 (257)
T ss_pred CEEEEcccccCCCccchHHHHHHHHHhcCCCCCccccccccceEEEEEECCccccccc
Confidence 36789999777665555444443333331111 110112333469999999887654
No 108
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional
Probab=52.67 E-value=10 Score=41.03 Aligned_cols=51 Identities=20% Similarity=0.256 Sum_probs=26.9
Q ss_pred EEEEeccCCCCCCchHHHHHhcccccccccCCCccccCCccEEEEcccccCCCCCh
Q 002007 384 FDFMADTGDGGNSSYSVARLLAQPHIRVTRDDSVFTLPRGDVLLIGGDLAYPNPSA 439 (983)
Q Consensus 384 Fd~VaDtGDG~dStYaVA~LmAqp~L~v~~~~~~~~lPRgdfLVlgGDlvYP~gs~ 439 (983)
+++|||.= |. -.+..+++.+-..+.. ++....|..|.+|++||++=-++..
T Consensus 3 ~~vIGDIH-G~--~~~L~~lL~~~~~~~~--~~~~~~~~~d~li~lGDliDRGp~S 53 (245)
T PRK13625 3 YDIIGDIH-GC--YQEFQALTEKLGYNWS--SGLPVHPDQRKLAFVGDLTDRGPHS 53 (245)
T ss_pred eEEEEECc-cC--HHHHHHHHHHcCCCcc--cCcccCCCCCEEEEECcccCCCcCh
Confidence 67899993 21 1234455544221110 0001124568899999977655543
No 109
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=50.58 E-value=12 Score=39.99 Aligned_cols=18 Identities=28% Similarity=0.451 Sum_probs=13.9
Q ss_pred CccEEEEcccccCCCCCh
Q 002007 422 RGDVLLIGGDLAYPNPSA 439 (983)
Q Consensus 422 RgdfLVlgGDlvYP~gs~ 439 (983)
..|.++.+||++--++..
T Consensus 37 ~~d~lv~lGDlIDrG~~s 54 (234)
T cd07423 37 EGRRAVFVGDLVDRGPDS 54 (234)
T ss_pred CCCEEEEECCccCCCCCH
Confidence 468999999988766543
No 110
>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain. Rhilphs (Rhizobiales/ Rhodobacterales/ Rhodospirillaceae-like phosphatases) are a phylogenetically distinct group of PPP (phosphoprotein phosphatases), found only in land plants. They are named for their close relationship to to PPP phosphatases from alpha-Proteobacteria, including Rhizobiales, Rhodobacterales and Rhodospirillaceae. The PPP (phosphoprotein phosphatase) family, to which the Rhilphs belong, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central rol
Probab=47.57 E-value=19 Score=41.09 Aligned_cols=21 Identities=14% Similarity=0.243 Sum_probs=13.7
Q ss_pred CccEEEEcccccCCCCChhhh
Q 002007 422 RGDVLLIGGDLAYPNPSAFTY 442 (983)
Q Consensus 422 RgdfLVlgGDlvYP~gs~e~Y 442 (983)
..+.+|++||.+=-++...+.
T Consensus 34 ~~~~iVfLGDyVDRGPdS~eV 54 (304)
T cd07421 34 ASALVIFLGDYCDRGPETRKV 54 (304)
T ss_pred CCcEEEEeCCcCCCCCCHHHH
Confidence 456899999966555544333
No 111
>PRK11907 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=46.57 E-value=95 Score=39.94 Aligned_cols=45 Identities=24% Similarity=0.265 Sum_probs=26.1
Q ss_pred CCeEEEEecCCCCccccccCCcchhhHHHHHHhhhCCceeEEEcCccCCC
Q 002007 565 RDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHY 614 (983)
Q Consensus 565 ~d~VIL~tHeP~w~~~~~~~~~~~~~l~~Lie~~L~~RV~L~LAGHiHhY 614 (983)
-|-||+++|.-.- .+... ...+|....+.++ ..||++++||.|..
T Consensus 310 aDvIIaLsH~G~~-~d~~~--~~~En~~~~LA~v--~GIDaIvgGHsH~~ 354 (814)
T PRK11907 310 ADIVLVLSHSGIG-DDQYE--VGEENVGYQIASL--SGVDAVVTGHSHAE 354 (814)
T ss_pred CCEEEEEeCCCcc-ccccc--ccccchhhHHhcC--CCCCEEEECCCCCc
Confidence 4778888887643 22211 1122332223332 45999999999974
No 112
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=37.72 E-value=41 Score=37.38 Aligned_cols=99 Identities=19% Similarity=0.212 Sum_probs=57.2
Q ss_pred CCCCcchhHHHHHhhheeeEEecCcHHHHHHHhcccchhhh-HHHHHHHHHHhhcCccccCccCCCccchhHHHHHHHHH
Q 002007 29 YPHEHSRHAIIAVVVGCLFFISSDNMHTLIEKLDNNIKWWS-MYACLLGFFYFFSSPFIGKTITPSYSNFSRWYIAWILV 107 (983)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (983)
+|+||++|+-+..++.+...+..=-+-..+...-.+.-|+. ..+++.|++.|+=.=+|-.|+..+.....+...
T Consensus 8 ~~~er~k~~~~G~~vl~ta~la~~s~~~a~~~~~~~~~~~ai~~glvwgl~I~~lDR~ivss~~~~~~~~~~~~~----- 82 (301)
T PF14362_consen 8 SPAERNKYAGIGAAVLFTALLAGLSGGYALYTVFGGPVWAAIPFGLVWGLVIFNLDRFIVSSIRKSDGSRKRLLQ----- 82 (301)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHH-----
Confidence 79999999887665544333222122222222222222444 345566666666556666666555443333222
Q ss_pred HHHhcCccccccccccccchhHHHHHHHHHHHHHHHHH
Q 002007 108 AAVYHLPSFQSMGVDLRMNLSLFLTIFLASVLFLLVFH 145 (983)
Q Consensus 108 ~~~~h~p~~~~~g~d~r~~~s~~~~~~~~s~~~~~~~~ 145 (983)
+-.|.=|++.+-+-+|..+-|.+|+
T Consensus 83 -------------~~~R~~lAvliaivIs~pl~l~iF~ 107 (301)
T PF14362_consen 83 -------------ALPRLLLAVLIAIVISEPLELKIFE 107 (301)
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2357778888888999988888876
No 113
>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase.
Probab=36.82 E-value=22 Score=40.01 Aligned_cols=19 Identities=37% Similarity=0.651 Sum_probs=15.1
Q ss_pred CCccEEEEcccccCCCCCh
Q 002007 421 PRGDVLLIGGDLAYPNPSA 439 (983)
Q Consensus 421 PRgdfLVlgGDlvYP~gs~ 439 (983)
|..|-++++||++--++..
T Consensus 27 ~~~D~l~~lGDlVdRGP~s 45 (279)
T TIGR00668 27 PGQDTLWLTGDLVARGPGS 45 (279)
T ss_pred CCCCEEEEeCCccCCCCCH
Confidence 3457899999999888755
No 114
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=28.62 E-value=1.1e+02 Score=31.84 Aligned_cols=41 Identities=22% Similarity=0.266 Sum_probs=25.9
Q ss_pred EEEEecCCCCCCCHHHHHHHHHHHHhhcCCCCeEEEEecCCC
Q 002007 535 VFGLDLALHCDIDVYQFKFFAELVKEQVGERDSVIIMTHEPN 576 (983)
Q Consensus 535 LlGLDtql~gdID~~Q~~wF~~ll~~~v~~~d~VIL~tHeP~ 576 (983)
++.|| .+...+|...++.+.+.+.+....+..+|+++|++.
T Consensus 146 llllD-EPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~ 186 (201)
T cd03231 146 LWILD-EPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDL 186 (201)
T ss_pred EEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch
Confidence 56666 345566777777777776543334556777777765
No 115
>COG2843 PgsA Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane]
Probab=27.93 E-value=1.7e+02 Score=34.59 Aligned_cols=68 Identities=15% Similarity=0.138 Sum_probs=44.3
Q ss_pred cCCCCeEEEEecC-CCCccccccCCcchhhHHHHHHhhhCCceeEEEcCccCCCceeeecCCCCCcccceEEEecCCCCC
Q 002007 562 VGERDSVIIMTHE-PNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMRHSYVPSDGPVYVQHLLVNGCGGAF 640 (983)
Q Consensus 562 v~~~d~VIL~tHe-P~w~~~~~~~~~~~~~l~~Lie~~L~~RV~L~LAGHiHhYqR~~~~~~~G~~~~~~lIVsGGGGAf 640 (983)
....|-||+..|+ =.|-.+.. +..+.+-++.....++++..+|-|+-|..+.-. +| .+|+ .+-|.|
T Consensus 221 ~k~adlviv~~HwG~ey~~~p~------~~q~~~a~~lidAGa~iIvGhhpHvlqpiE~~~-~~-----~~I~-YsLGnf 287 (372)
T COG2843 221 KKGADLVIVQPHWGVEYAYEPA------AGQRALARRLIDAGADIIVGHHPHVLQPIEIYI-QG-----KPIL-YSLGNF 287 (372)
T ss_pred hccCCEEEEeccccccccCCCc------HHHHHHHHHHHhcCcCeEecCCCCcCcceEEec-CC-----cEEE-Eeccce
Confidence 4567899999997 55554422 213334455555689999999999999887552 12 2344 777776
Q ss_pred CC
Q 002007 641 LH 642 (983)
Q Consensus 641 Lh 642 (983)
+-
T Consensus 288 ~f 289 (372)
T COG2843 288 LF 289 (372)
T ss_pred ec
Confidence 54
No 116
>PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT). This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane
Probab=26.06 E-value=2.1e+02 Score=30.85 Aligned_cols=80 Identities=20% Similarity=0.274 Sum_probs=41.2
Q ss_pred CCCcEEEeCCCCCCCCChhHHHHHhhccc----cCCccccCCCcceEEEEcCCcEEEEEEecCCCCCCCHHHHHHHHHHH
Q 002007 483 DGPQCYIIPGNHDWFDGLNTFMRFICHKS----WLGGWFMPQKKSYFALQLPKGWWVFGLDLALHCDIDVYQFKFFAELV 558 (983)
Q Consensus 483 ~gP~ifAIPGNHDWyDGL~aF~r~F~~r~----~lgGW~mpQ~~SYFAlrLp~~wWLlGLDtql~gdID~~Q~~wF~~ll 558 (983)
.++++.-||||.==|. +.|-+.... +... .+..-.||+++++.. +-+++ +..=..|.+++.+.+
T Consensus 3 ~g~pVlFIhG~~Gs~~----q~rsl~~~~~~~~~~~~--~~~~~d~ft~df~~~--~s~~~----g~~l~~q~~~~~~~i 70 (225)
T PF07819_consen 3 SGIPVLFIHGNAGSYK----QVRSLASELQRKALLND--NSSHFDFFTVDFNEE--LSAFH----GRTLQRQAEFLAEAI 70 (225)
T ss_pred CCCEEEEECcCCCCHh----HHHHHHHHHhhhhhhcc--CccceeEEEeccCcc--ccccc----cccHHHHHHHHHHHH
Confidence 4567999999853332 333222111 1111 111234667766653 22222 222246777777755
Q ss_pred Hh-------hcCCCCeEEEEecC
Q 002007 559 KE-------QVGERDSVIIMTHE 574 (983)
Q Consensus 559 ~~-------~v~~~d~VIL~tHe 574 (983)
+. ...+.++||+++|.
T Consensus 71 ~~i~~~~~~~~~~~~~vilVgHS 93 (225)
T PF07819_consen 71 KYILELYKSNRPPPRSVILVGHS 93 (225)
T ss_pred HHHHHhhhhccCCCCceEEEEEc
Confidence 41 12467899999995
No 117
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=25.26 E-value=1.1e+02 Score=31.66 Aligned_cols=41 Identities=20% Similarity=0.201 Sum_probs=25.1
Q ss_pred EEEEecCCCCCCCHHHHHHHHHHHHhhcCCCCeEEEEecCCC
Q 002007 535 VFGLDLALHCDIDVYQFKFFAELVKEQVGERDSVIIMTHEPN 576 (983)
Q Consensus 535 LlGLDtql~gdID~~Q~~wF~~ll~~~v~~~d~VIL~tHeP~ 576 (983)
++.|| .+...+|...++.+.+.+++..+.+..+|++||++.
T Consensus 158 lllLD-EPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~ 198 (214)
T TIGR02673 158 LLLAD-EPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS 198 (214)
T ss_pred EEEEe-CCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 55666 344566777677777766542233556777777764
No 118
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=25.16 E-value=1.3e+02 Score=30.93 Aligned_cols=41 Identities=15% Similarity=0.267 Sum_probs=29.8
Q ss_pred EEEEecCCCCCCCHHHHHHHHHHHHhhcCCCCeEEEEecCCC
Q 002007 535 VFGLDLALHCDIDVYQFKFFAELVKEQVGERDSVIIMTHEPN 576 (983)
Q Consensus 535 LlGLDtql~gdID~~Q~~wF~~ll~~~v~~~d~VIL~tHeP~ 576 (983)
++.+| .+...+|....+.+.+.+++..+.+..+|+++|++.
T Consensus 129 vlllD-EP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~ 169 (192)
T cd03232 129 ILFLD-EPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPS 169 (192)
T ss_pred EEEEe-CCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCCh
Confidence 77777 455677888888888877643334678899999875
No 119
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=24.11 E-value=1.4e+02 Score=30.68 Aligned_cols=41 Identities=20% Similarity=0.293 Sum_probs=26.0
Q ss_pred EEEEecCCCCCCCHHHHHHHHHHHHhhcCCCCeEEEEecCCC
Q 002007 535 VFGLDLALHCDIDVYQFKFFAELVKEQVGERDSVIIMTHEPN 576 (983)
Q Consensus 535 LlGLDtql~gdID~~Q~~wF~~ll~~~v~~~d~VIL~tHeP~ 576 (983)
++.||- +...+|..-.+.+.+.+.+..+.+..+|+++|+|.
T Consensus 148 llllDE-Pt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~ 188 (198)
T TIGR01189 148 LWILDE-PTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDL 188 (198)
T ss_pred EEEEeC-CCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccc
Confidence 667773 44566766677777766532234567788888774
No 120
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=22.67 E-value=1.4e+02 Score=31.15 Aligned_cols=44 Identities=11% Similarity=0.222 Sum_probs=29.2
Q ss_pred EEEEecCCCCCCCHHHHHHHHHHHHhhcCCCCeEEEEecCCCCcc
Q 002007 535 VFGLDLALHCDIDVYQFKFFAELVKEQVGERDSVIIMTHEPNWLL 579 (983)
Q Consensus 535 LlGLDtql~gdID~~Q~~wF~~ll~~~v~~~d~VIL~tHeP~w~~ 579 (983)
++.|| .+...+|....+.+.+.+.+..+.+..+|+++|++....
T Consensus 158 llllD-EPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~ 201 (214)
T PRK13543 158 LWLLD-EPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAP 201 (214)
T ss_pred EEEEe-CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhh
Confidence 66777 344667777777777777543344567888888876443
No 121
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=21.90 E-value=1.5e+02 Score=30.22 Aligned_cols=41 Identities=22% Similarity=0.265 Sum_probs=25.2
Q ss_pred EEEEecCCCCCCCHHHHHHHHHHHHhhcCCCCeEEEEecCCC
Q 002007 535 VFGLDLALHCDIDVYQFKFFAELVKEQVGERDSVIIMTHEPN 576 (983)
Q Consensus 535 LlGLDtql~gdID~~Q~~wF~~ll~~~v~~~d~VIL~tHeP~ 576 (983)
++.|| .+...+|....+.+.+.+.+....+..||+++|.+.
T Consensus 148 llllD-EPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 148 VLLLD-EPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred EEEEc-CCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 66677 344566766666777766532233457777777764
No 122
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=21.34 E-value=1.5e+02 Score=32.48 Aligned_cols=44 Identities=18% Similarity=0.294 Sum_probs=36.7
Q ss_pred EEEEecCCCCCCCHHHHHHHHHHHHhhcCCCCeEEEEecCCCCcc
Q 002007 535 VFGLDLALHCDIDVYQFKFFAELVKEQVGERDSVIIMTHEPNWLL 579 (983)
Q Consensus 535 LlGLDtql~gdID~~Q~~wF~~ll~~~v~~~d~VIL~tHeP~w~~ 579 (983)
||-|| .+...+|..+.+=|..++.++.+.+.=||+-||.|.=..
T Consensus 151 LWiLD-EP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~~ 194 (209)
T COG4133 151 LWILD-EPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPIA 194 (209)
T ss_pred ceeec-CcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCCC
Confidence 34466 456789999999999999888999999999999998554
No 123
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=20.73 E-value=1.6e+02 Score=30.47 Aligned_cols=42 Identities=19% Similarity=0.270 Sum_probs=26.0
Q ss_pred EEEEecCCCCCCCHHHHHHHHHHHHhhcCCCCeEEEEecCCCC
Q 002007 535 VFGLDLALHCDIDVYQFKFFAELVKEQVGERDSVIIMTHEPNW 577 (983)
Q Consensus 535 LlGLDtql~gdID~~Q~~wF~~ll~~~v~~~d~VIL~tHeP~w 577 (983)
++-|| .+...+|....+.+.+.+++-.+.+..||+++|++..
T Consensus 156 llllD-EP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~ 197 (213)
T cd03262 156 VMLFD-EPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGF 197 (213)
T ss_pred EEEEe-CCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 66666 3445667777777777665322234567777787753
No 124
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=20.64 E-value=94 Score=31.54 Aligned_cols=18 Identities=17% Similarity=0.316 Sum_probs=14.3
Q ss_pred cCCccEEEEcccccCCCC
Q 002007 420 LPRGDVLLIGGDLAYPNP 437 (983)
Q Consensus 420 lPRgdfLVlgGDlvYP~g 437 (983)
++++|.|+++||++....
T Consensus 40 ~~~~d~vi~~GDl~~~~~ 57 (168)
T cd07390 40 VGPDDTVYHLGDFSFGGK 57 (168)
T ss_pred cCCCCEEEEeCCCCCCCC
Confidence 345799999999988654
No 125
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=20.49 E-value=1.5e+02 Score=30.73 Aligned_cols=41 Identities=20% Similarity=0.374 Sum_probs=24.2
Q ss_pred EEEEecCCCCCCCHHHHHHHHHHHHhhcCCCCeEEEEecCCC
Q 002007 535 VFGLDLALHCDIDVYQFKFFAELVKEQVGERDSVIIMTHEPN 576 (983)
Q Consensus 535 LlGLDtql~gdID~~Q~~wF~~ll~~~v~~~d~VIL~tHeP~ 576 (983)
++.|| .+...+|....+.+.+++++..+++..||+++|++.
T Consensus 149 ~lllD-EP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~ 189 (210)
T cd03269 149 LLILD-EPFSGLDPVNVELLKDVIRELARAGKTVILSTHQME 189 (210)
T ss_pred EEEEe-CCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH
Confidence 56666 344566666666776666532233456777777654
No 126
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=20.41 E-value=1.5e+02 Score=31.33 Aligned_cols=42 Identities=24% Similarity=0.305 Sum_probs=23.3
Q ss_pred EEEEecCCCCCCCHHHHHHHHHHHHhhcCCCCeEEEEecCCCC
Q 002007 535 VFGLDLALHCDIDVYQFKFFAELVKEQVGERDSVIIMTHEPNW 577 (983)
Q Consensus 535 LlGLDtql~gdID~~Q~~wF~~ll~~~v~~~d~VIL~tHeP~w 577 (983)
++.|| .+...+|....+.+.+.+.+..+.+..||+++|++..
T Consensus 165 llllD-EPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~ 206 (243)
T TIGR01978 165 LAILD-EIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRL 206 (243)
T ss_pred EEEec-CCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHH
Confidence 55566 3445566666666666664322234566677776643
No 127
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=20.23 E-value=1.7e+02 Score=30.50 Aligned_cols=42 Identities=19% Similarity=0.179 Sum_probs=25.6
Q ss_pred EEEEecCCCCCCCHHHHHHHHHHHHhhcCCCCeEEEEecCCCC
Q 002007 535 VFGLDLALHCDIDVYQFKFFAELVKEQVGERDSVIIMTHEPNW 577 (983)
Q Consensus 535 LlGLDtql~gdID~~Q~~wF~~ll~~~v~~~d~VIL~tHeP~w 577 (983)
++-|| .+...+|....+.+.+.+.+..+.+..||+++|++..
T Consensus 159 llllD-EPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~ 200 (216)
T TIGR00960 159 LLLAD-EPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINL 200 (216)
T ss_pred EEEEe-CCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 66666 3445667766677777665322334567777777653
No 128
>TIGR02106 cyd_oper_ybgT cyd operon protein YbgT. This model describes a very small (as short as 33 amino acids) protein of unknown function, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It begins with an aromatic motif MWYFXW and appears to contain a membrane-spanning helix. This protein appears to be restricted to the Proteobacteria and exist in a single copy only. We suggest it may be a membrane subunit of the terminal oxidase. The family is named after the E. coli member YbgT. This model excludes the apparently related protein YccB.
Probab=20.16 E-value=58 Score=25.61 Aligned_cols=10 Identities=60% Similarity=1.438 Sum_probs=7.8
Q ss_pred HHHHHHHHHH
Q 002007 99 RWYIAWILVA 108 (983)
Q Consensus 99 ~~~~~~~~~~ 108 (983)
+||.+||+..
T Consensus 1 MWYfaWilG~ 10 (30)
T TIGR02106 1 MWYFAWILGT 10 (30)
T ss_pred ChhHHHHHHH
Confidence 5899998754
No 129
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=20.16 E-value=1.6e+02 Score=30.40 Aligned_cols=41 Identities=22% Similarity=0.378 Sum_probs=23.7
Q ss_pred EEEEecCCCCCCCHHHHHHHHHHHHhhcCCCCeEEEEecCCC
Q 002007 535 VFGLDLALHCDIDVYQFKFFAELVKEQVGERDSVIIMTHEPN 576 (983)
Q Consensus 535 LlGLDtql~gdID~~Q~~wF~~ll~~~v~~~d~VIL~tHeP~ 576 (983)
++.||- +...+|...++.+.+.+++....+..+|+++|++.
T Consensus 147 llllDE-Pt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~ 187 (205)
T cd03226 147 LLIFDE-PTSGLDYKNMERVGELIRELAAQGKAVIVITHDYE 187 (205)
T ss_pred EEEEeC-CCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 566663 44556666666666666532233456777777664
No 130
>PF07717 OB_NTP_bind: Oligonucleotide/oligosaccharide-binding (OB)-fold; InterPro: IPR011709 This domain is found towards the C terminus of the DEAD-box helicases (IPR011545 from INTERPRO). In these helicases it appears to be always found in association with IPR007502 from INTERPRO. ; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=20.14 E-value=40 Score=31.83 Aligned_cols=32 Identities=25% Similarity=0.547 Sum_probs=24.3
Q ss_pred cceeeeeccccCCCCCCCCccchHHHHHHHHH
Q 002007 250 SKWVIYGELGNDNGGSSDEISPIYSLWATFIG 281 (983)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (983)
++|++|+|+++.+...--.+++|-..|+..++
T Consensus 80 p~~vvy~e~~~t~k~y~~~~t~I~~~wl~~~~ 111 (114)
T PF07717_consen 80 PKWVVYHELVRTSKPYMRDVTAISPEWLLLFA 111 (114)
T ss_dssp -SEEEEEEEEESSSEEEEEEEE--HHHHHHH-
T ss_pred cccchhhhheecCCcEEEECcCCCHHHHHHHc
Confidence 46999999999887777788999999987654
No 131
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=20.06 E-value=1.7e+02 Score=30.42 Aligned_cols=41 Identities=20% Similarity=0.349 Sum_probs=23.6
Q ss_pred EEEEecCCCCCCCHHHHHHHHHHHHhhcCCCCeEEEEecCCC
Q 002007 535 VFGLDLALHCDIDVYQFKFFAELVKEQVGERDSVIIMTHEPN 576 (983)
Q Consensus 535 LlGLDtql~gdID~~Q~~wF~~ll~~~v~~~d~VIL~tHeP~ 576 (983)
++.+| .+...+|....+.+.+.+++..+.+..||+++|++.
T Consensus 110 llLlD-EPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~ 150 (176)
T cd03238 110 LFILD-EPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLD 150 (176)
T ss_pred EEEEe-CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 55555 334556666666666665532233556777777664
Done!