Query 002008
Match_columns 983
No_of_seqs 173 out of 190
Neff 4.2
Searched_HMMs 46136
Date Thu Mar 28 14:25:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002008.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002008hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07699 GCC2_GCC3: GCC2 and G 96.4 0.0016 3.5E-08 53.6 1.9 26 813-840 9-34 (48)
2 KOG0196 Tyrosine kinase, EPH ( 96.0 0.006 1.3E-07 74.7 4.6 55 804-871 261-319 (996)
3 PF07562 NCD3G: Nine Cysteines 93.5 0.015 3.2E-07 49.5 -0.9 36 803-840 6-51 (54)
4 cd00185 TNFR Tumor necrosis fa 92.6 0.18 3.9E-06 47.4 4.7 65 801-872 12-87 (98)
5 PHA02637 TNF-alpha-receptor-li 90.7 0.26 5.7E-06 49.1 3.9 58 805-867 31-93 (127)
6 PF07699 GCC2_GCC3: GCC2 and G 87.3 0.49 1.1E-05 39.1 2.6 33 799-831 7-44 (48)
7 PHA02637 TNF-alpha-receptor-li 87.2 0.45 9.7E-06 47.5 2.7 40 797-838 38-87 (127)
8 PTZ00382 Variant-specific surf 82.5 1.4 3E-05 42.0 3.6 24 813-839 4-27 (96)
9 PF12273 RCR: Chitin synthesis 69.2 3.1 6.7E-05 41.1 2.1 22 889-910 2-24 (130)
10 PF14946 DUF4501: Domain of un 64.2 13 0.00027 39.1 5.3 92 817-921 27-122 (180)
11 smart00180 EGF_Lam Laminin-typ 59.6 5.6 0.00012 32.8 1.6 19 806-824 22-40 (46)
12 cd00055 EGF_Lam Laminin-type e 58.9 5.8 0.00013 33.1 1.6 27 797-826 17-43 (50)
13 cd00185 TNFR Tumor necrosis fa 56.9 11 0.00023 35.6 3.2 31 812-842 11-43 (98)
14 PF04519 Bactofilin: Polymer-f 56.3 90 0.002 29.2 9.2 16 149-164 82-97 (101)
15 PRK09677 putative lipopolysacc 54.4 31 0.00067 36.1 6.4 65 96-163 31-95 (192)
16 PF00053 Laminin_EGF: Laminin 53.5 6 0.00013 32.6 0.8 21 806-826 22-42 (49)
17 KOG1056 Glutamate-gated metabo 50.8 22 0.00047 45.7 5.3 40 801-844 493-541 (878)
18 KOG4289 Cadherin EGF LAG seven 50.7 12 0.00026 49.7 3.1 78 795-881 1734-1846(2531)
19 PF07354 Sp38: Zona-pellucida- 48.4 14 0.0003 41.4 2.8 36 801-839 217-261 (271)
20 cd00064 FU Furin-like repeats. 43.9 18 0.00039 29.7 2.2 9 815-823 17-25 (49)
21 cd03357 LbH_MAT_GAT Maltose O- 41.8 73 0.0016 32.5 6.7 70 90-164 64-147 (169)
22 KOG1836 Extracellular matrix g 37.2 24 0.00052 48.3 3.0 43 798-840 794-838 (1705)
23 COG4698 Uncharacterized protei 37.1 33 0.00072 36.7 3.3 53 890-945 14-69 (197)
24 PRK10092 maltose O-acetyltrans 31.9 1.2E+02 0.0026 31.9 6.5 70 90-164 75-158 (183)
25 KOG0921 Dosage compensation co 30.6 1.4E+02 0.0031 39.0 7.7 93 613-757 1185-1278(1282)
26 COG1045 CysE Serine acetyltran 30.6 60 0.0013 35.1 4.0 35 109-150 120-154 (194)
27 PRK09527 lacA galactoside O-ac 29.8 1.2E+02 0.0026 32.6 6.2 70 90-164 77-160 (203)
28 cd05825 LbH_wcaF_like wcaF-lik 29.5 1.5E+02 0.0032 27.9 6.2 67 92-163 7-84 (107)
29 PRK11132 cysE serine acetyltra 29.0 57 0.0012 36.8 3.7 19 87-105 140-158 (273)
30 PF12661 hEGF: Human growth fa 28.8 18 0.0004 23.1 -0.0 11 805-815 3-13 (13)
31 KOG4260 Uncharacterized conser 27.3 23 0.0005 40.0 0.4 44 792-838 161-204 (350)
32 KOG0196 Tyrosine kinase, EPH ( 25.2 47 0.001 42.5 2.5 34 801-834 274-312 (996)
33 PLN02357 serine acetyltransfer 24.1 1.8E+02 0.004 34.2 6.7 26 89-114 227-252 (360)
34 PRK09458 pspB phage shock prot 23.9 30 0.00066 32.1 0.4 23 890-912 5-27 (75)
35 TIGR02976 phageshock_pspB phag 23.6 22 0.00047 32.9 -0.6 23 890-912 5-27 (75)
36 PRK10502 putative acyl transfe 23.4 1.7E+02 0.0038 30.4 5.9 69 91-164 74-153 (182)
37 PRK11548 outer membrane biogen 23.3 62 0.0013 31.5 2.4 38 1-43 1-39 (113)
38 COG1207 GlmU N-acetylglucosami 23.0 2.1E+02 0.0045 34.6 6.9 28 90-117 264-295 (460)
39 PF00020 TNFR_c6: TNFR/NGFR cy 23.0 31 0.00067 27.3 0.2 19 818-838 1-19 (39)
40 KOG4258 Insulin/growth factor 22.9 57 0.0012 41.9 2.6 28 946-973 409-436 (1025)
41 PLN02357 serine acetyltransfer 22.9 97 0.0021 36.4 4.2 55 88-149 252-312 (360)
42 PF15050 SCIMP: SCIMP protein 22.5 78 0.0017 32.0 2.9 25 897-921 18-43 (133)
43 PRK11132 cysE serine acetyltra 21.0 2.3E+02 0.0051 32.0 6.6 67 85-162 164-236 (273)
44 KOG4750 Serine O-acetyltransfe 20.6 1.6E+02 0.0035 32.9 5.1 23 128-150 213-235 (269)
45 PF00757 Furin-like: Furin-lik 20.4 40 0.00086 34.6 0.5 21 798-819 76-101 (149)
46 PLN02739 serine acetyltransfer 20.2 2E+02 0.0042 33.9 5.9 17 132-148 274-290 (355)
No 1
>PF07699 GCC2_GCC3: GCC2 and GCC3; InterPro: IPR011641 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. This entry represents various ephrin type A and B receptors, which have tyrosine kinase activity.
Probab=96.43 E-value=0.0016 Score=53.65 Aligned_cols=26 Identities=50% Similarity=1.127 Sum_probs=22.5
Q ss_pred ccceeCCCCcccCCCCCCCCccccCCCC
Q 002008 813 TFCKECPIGTYKDMEGSDESLCTPCSLE 840 (983)
Q Consensus 813 ~fC~eCP~GtYK~~~Gs~~~lC~pC~~~ 840 (983)
.-|++||.||||+..|+ ..|++||..
T Consensus 9 ~~C~~Cp~GtYq~~~g~--~~C~~Cp~g 34 (48)
T PF07699_consen 9 NKCQPCPKGTYQDEEGQ--TSCTPCPPG 34 (48)
T ss_pred CccCCCCCCccCCccCC--ccCccCcCC
Confidence 35999999999999877 479999974
No 2
>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]
Probab=96.03 E-value=0.006 Score=74.65 Aligned_cols=55 Identities=35% Similarity=0.751 Sum_probs=39.8
Q ss_pred ccCCCCcc----CccceeCCCCcccCCCCCCCCccccCCCCCCCCcceeEEeeCCccCCCCCcccccccccC
Q 002008 804 KKCPKGLY----GTFCKECPIGTYKDMEGSDESLCTPCSLELLPRRANFIYVRGGVSQPFCPYECISEKYRM 871 (983)
Q Consensus 804 ~~CP~Gly----G~fC~eCP~GtYK~~~Gs~~~lC~pC~~~~~P~ra~~~yv~~G~~~~~Cpy~C~sdk~~~ 871 (983)
=-|.+||. +.-|+.||.||||... ...+|.+||.+.... .. ..+.| .|..++|+-
T Consensus 261 C~C~aGye~~~~~~~C~aCp~G~yK~~~--~~~~C~~CP~~S~s~-------~e--ga~~C--~C~~gyyRA 319 (996)
T KOG0196|consen 261 CVCKAGYEEAENGKACQACPPGTYKASQ--GDSLCLPCPPNSHSS-------SE--GATSC--TCENGYYRA 319 (996)
T ss_pred eeecCCCCcccCCCcceeCCCCcccCCC--CCCCCCCCCCCCCCC-------CC--CCCcc--cccCCcccC
Confidence 46889994 5669999999999985 458899999754221 22 23667 477888744
No 3
>PF07562 NCD3G: Nine Cysteines Domain of family 3 GPCR; InterPro: IPR011500 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). GPCR family 3 receptors (also known as family C) are structurally similar to other GPCRs, but do not show any significant sequence similarity and thus represent a distinct group. Structurally they are composed of four elements; an N-terminal signal sequence; a large hydrophilic extracellular agonist-binding region containing several conserved cysteine residues which could be involved in disulphide bonds; a shorter region containing seven transmembrane domains; and a C-terminal cytoplasmic domain of variable length []. Family 3 members include the metabotropic glutamate receptors, the extracellular calcium-sensing receptors, the gamma-amino-butyric acid (GABA) type B receptors, and the vomeronasal type-2 receptors [, , , ]. As these receptors regulate many important physiological processes they are potentially promising targets for drug development. This entry represents a conserved sequence, found in the extracellular region, that contains several highly-conserved Cys residues that are predicted to form disulphide bridges.; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 2E4X_B 2E4Y_A 2E4U_B 2E4V_B 2E4W_A.
Probab=93.48 E-value=0.015 Score=49.45 Aligned_cols=36 Identities=33% Similarity=0.741 Sum_probs=20.6
Q ss_pred cccCCCCcc-----C-----ccceeCCCCcccCCCCCCCCccccCCCC
Q 002008 803 GKKCPKGLY-----G-----TFCKECPIGTYKDMEGSDESLCTPCSLE 840 (983)
Q Consensus 803 ~~~CP~Gly-----G-----~fC~eCP~GtYK~~~Gs~~~lC~pC~~~ 840 (983)
.++|++|++ + +-|++||.|+|.|.+ |...|.+||.+
T Consensus 6 S~~C~pG~~k~~~~~~~~CCw~C~~C~~~~is~~~--~~~~C~~C~~~ 51 (54)
T PF07562_consen 6 SEPCPPGQRKKIQKGQPSCCWDCVPCPEGEISNQT--DSTSCTKCPEG 51 (54)
T ss_dssp S----TTTEEEE--SSS-S--EEEE--TTEEEE----ETTEEEE--TT
T ss_pred CCCCCCCCEECccCCCcceEEEeecCCCCcEECCC--CccccccCCCc
Confidence 468999996 2 339999999999987 66889999974
No 4
>cd00185 TNFR Tumor necrosis factor receptor (TNFR) domain; superfamily of TNF-like receptor domains. When bound to TNF-like cytokines, TNFRs trigger multiple signal transduction pathways, they are involved in inflammation response, apoptosis, autoimmunity and organogenesis. TNFRs domains are elongated with generally three tandem repeats of cysteine-rich domains (CRDs). They fit in the grooves between protomers within the ligand trimer. Some TNFRs, such as NGFR and HveA, bind ligands with no structural similarity to TNF and do not bind ligand trimers.
Probab=92.59 E-value=0.18 Score=47.38 Aligned_cols=65 Identities=26% Similarity=0.577 Sum_probs=41.5
Q ss_pred EEcccCCCCcc---------CccceeCCCCcccCCCCCCCCccccCCCCCCCCcceeEEeeCC--ccCCCCCcccccccc
Q 002008 801 VTGKKCPKGLY---------GTFCKECPIGTYKDMEGSDESLCTPCSLELLPRRANFIYVRGG--VSQPFCPYECISEKY 869 (983)
Q Consensus 801 i~~~~CP~Gly---------G~fC~eCP~GtYK~~~Gs~~~lC~pC~~~~~P~ra~~~yv~~G--~~~~~Cpy~C~sdk~ 869 (983)
.-=+.||+|++ ..-|++||.|||+..... ...|++|+.=. ...+-++.+ .+.+.|. |.+++|
T Consensus 12 ~cC~~C~pG~~~~~~C~~~~~t~C~~C~~g~ys~~~~~-~~~C~~c~~C~----~g~~~~~~ct~t~dt~C~--C~~G~y 84 (98)
T cd00185 12 LCCDQCPPGTYLSKDCTPGSDTVCEPCPPGTYTDSWNH-LPKCLSCRTCD----SGLVEKAPCTATRNTVCG--CKPGFY 84 (98)
T ss_pred CCCCCCCCCccCCCcCCCCCCCeecCCCCCCcccCCCC-CCcCCcCccCC----CCCEEEccCCCCCCCeEe--CCCCCE
Confidence 44588999996 245999999999997422 25788887532 222333333 2334575 888877
Q ss_pred cCC
Q 002008 870 RMP 872 (983)
Q Consensus 870 ~~p 872 (983)
-..
T Consensus 85 ~~~ 87 (98)
T cd00185 85 CLT 87 (98)
T ss_pred ecC
Confidence 443
No 5
>PHA02637 TNF-alpha-receptor-like protein; Provisional
Probab=90.75 E-value=0.26 Score=49.12 Aligned_cols=58 Identities=28% Similarity=0.576 Sum_probs=36.8
Q ss_pred cCCCCcc--Ccc-ceeCCCCcccCCCCC--CCCccccCCCCCCCCcceeEEeeCCccCCCCCcccccc
Q 002008 805 KCPKGLY--GTF-CKECPIGTYKDMEGS--DESLCTPCSLELLPRRANFIYVRGGVSQPFCPYECISE 867 (983)
Q Consensus 805 ~CP~Gly--G~f-C~eCP~GtYK~~~Gs--~~~lC~pC~~~~~P~ra~~~yv~~G~~~~~Cpy~C~sd 867 (983)
.|..+-| +.+ |.+||+|||+...=+ ....|.|||..++....++.. .=..|.-.|+++
T Consensus 31 ~C~e~EY~~~~~CC~kCPPGt~v~~~Ct~~t~T~C~PCp~GTYTe~~N~~~-----~C~~C~~~Cd~~ 93 (127)
T PHA02637 31 KCKDNEYKRHNLCCLSCPPGTYASRLCDIKTNTQCTPCGSGTFTSHNNHLP-----ACLSCNGRCDRV 93 (127)
T ss_pred CCCCCcCcCCCeEcCCCCCCCEEeCcCCCCCCcccccCCCCCeeccCCCCC-----cccccCCccCcc
Confidence 6877766 444 999999999865322 135799999866555444431 124566667653
No 6
>PF07699 GCC2_GCC3: GCC2 and GCC3; InterPro: IPR011641 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. This entry represents various ephrin type A and B receptors, which have tyrosine kinase activity.
Probab=87.30 E-value=0.49 Score=39.09 Aligned_cols=33 Identities=45% Similarity=0.921 Sum_probs=26.0
Q ss_pred ceEEcccCCCCcc----C-ccceeCCCCcccCCCCCCC
Q 002008 799 GTVTGKKCPKGLY----G-TFCKECPIGTYKDMEGSDE 831 (983)
Q Consensus 799 GTi~~~~CP~Gly----G-~fC~eCP~GtYK~~~Gs~~ 831 (983)
+.-.=.+||.|+| | ..|++||.++|....|+..
T Consensus 7 ~~~~C~~Cp~GtYq~~~g~~~C~~Cp~g~~T~~~Gs~s 44 (48)
T PF07699_consen 7 GNNKCQPCPKGTYQDEEGQTSCTPCPPGSTTSSEGSTS 44 (48)
T ss_pred CCCccCCCCCCccCCccCCccCccCcCCCccCCcCCcC
Confidence 3344579999998 4 4499999999998888754
No 7
>PHA02637 TNF-alpha-receptor-like protein; Provisional
Probab=87.19 E-value=0.45 Score=47.53 Aligned_cols=40 Identities=28% Similarity=0.716 Sum_probs=30.8
Q ss_pred CCceEEcccCCCCcc---------CccceeCCCCcccCCCCCCC-CccccCC
Q 002008 797 EVGTVTGKKCPKGLY---------GTFCKECPIGTYKDMEGSDE-SLCTPCS 838 (983)
Q Consensus 797 ~~GTi~~~~CP~Gly---------G~fC~eCP~GtYK~~~Gs~~-~lC~pC~ 838 (983)
..+.+-=+.||||+| ..-|.+||.|||... |+. ..|.+|.
T Consensus 38 ~~~~~CC~kCPPGt~v~~~Ct~~t~T~C~PCp~GTYTe~--~N~~~~C~~C~ 87 (127)
T PHA02637 38 KRHNLCCLSCPPGTYASRLCDIKTNTQCTPCGSGTFTSH--NNHLPACLSCN 87 (127)
T ss_pred cCCCeEcCCCCCCCEEeCcCCCCCCcccccCCCCCeecc--CCCCCcccccC
Confidence 456677799999996 456999999999875 344 4588876
No 8
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=82.52 E-value=1.4 Score=42.01 Aligned_cols=24 Identities=29% Similarity=0.642 Sum_probs=18.4
Q ss_pred ccceeCCCCcccCCCCCCCCccccCCC
Q 002008 813 TFCKECPIGTYKDMEGSDESLCTPCSL 839 (983)
Q Consensus 813 ~fC~eCP~GtYK~~~Gs~~~lC~pC~~ 839 (983)
..|++|..|+|++. +...|.+|+.
T Consensus 4 ~~Ct~C~~g~~~~~---~~~~C~~C~~ 27 (96)
T PTZ00382 4 AVCTSCDSDKKPNK---DGSGCVLCSV 27 (96)
T ss_pred cccCcCCCCCccCC---CCCcCCcCCC
Confidence 46899999998885 3446888884
No 9
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=69.19 E-value=3.1 Score=41.07 Aligned_cols=22 Identities=32% Similarity=0.726 Sum_probs=12.0
Q ss_pred c-hhhHHHHHHHHHHHHHHHhhe
Q 002008 889 W-PFVLLLSCILVLLALLLSTLR 910 (983)
Q Consensus 889 ~-~F~L~l~~llillalv~s~~R 910 (983)
| +|+||++++||+|++++.+.|
T Consensus 2 W~l~~iii~~i~l~~~~~~~~~r 24 (130)
T PF12273_consen 2 WVLFAIIIVAILLFLFLFYCHNR 24 (130)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHH
Confidence 6 566666655555554444443
No 10
>PF14946 DUF4501: Domain of unknown function (DUF4501)
Probab=64.19 E-value=13 Score=39.05 Aligned_cols=92 Identities=23% Similarity=0.279 Sum_probs=52.4
Q ss_pred eCCCCcccCCCCCCCCccccCCCCCCCCcceeEEeeCCccCCCCCcccccccc-cC-CccCChHHHHHHHhCCcc-hhhH
Q 002008 817 ECPIGTYKDMEGSDESLCTPCSLELLPRRANFIYVRGGVSQPFCPYECISEKY-RM-PKCYTPLEELMYTFGGPW-PFVL 893 (983)
Q Consensus 817 eCP~GtYK~~~Gs~~~lC~pC~~~~~P~ra~~~yv~~G~~~~~Cpy~C~sdk~-~~-p~C~tp~eeli~t~GGp~-~F~L 893 (983)
.|-+|-|.........-|..|-|.+++.. ..+.|.+.-.-+-. .| .-=.||.. -.+|+|+ .-.|
T Consensus 27 lCgPGcyr~~~edgs~sCv~c~n~t~~~~----------n~s~c~~~~grg~~~pmNrStgtpg~---p~~g~P~vAASL 93 (180)
T PF14946_consen 27 LCGPGCYRHWNEDGSVSCVQCGNGTFPAY----------NGSECRSLAGRGAQFPMNRSTGTPGR---PHTGGPQVAASL 93 (180)
T ss_pred ccCCcceeeecCCCCeEEEEcCCCccccc----------CccccccccccCCccccccccCCCCC---CcCCChhHHHHH
Confidence 35566666544344456888877664421 13556655221111 22 11123322 2789999 7778
Q ss_pred HHHHHHHHHHHHHHhheeee-cCCCCCcc
Q 002008 894 LLSCILVLLALLLSTLRIKL-VGSSPSYR 921 (983)
Q Consensus 894 ~l~~llillalv~s~~R~K~-~~~d~~~~ 921 (983)
||=.|||-++|++|++-.-| +.+.++|.
T Consensus 94 ~LgTffIS~~LilSvA~FFYLKrs~kLP~ 122 (180)
T PF14946_consen 94 FLGTFFISLGLILSVASFFYLKRSSKLPH 122 (180)
T ss_pred HHHHHHHHHHHHHHHhhheeecccccCCc
Confidence 88899999999998775543 33445543
No 11
>smart00180 EGF_Lam Laminin-type epidermal growth factor-like domai.
Probab=59.61 E-value=5.6 Score=32.79 Aligned_cols=19 Identities=32% Similarity=0.821 Sum_probs=18.2
Q ss_pred CCCCccCccceeCCCCccc
Q 002008 806 CPKGLYGTFCKECPIGTYK 824 (983)
Q Consensus 806 CP~GlyG~fC~eCP~GtYK 824 (983)
|++++.|..|++|+.|+|-
T Consensus 22 C~~~~~G~~C~~C~~g~~g 40 (46)
T smart00180 22 CKPNVTGRRCDRCAPGYYG 40 (46)
T ss_pred CCCCCCCCCCCcCCCCcCC
Confidence 9999999999999999997
No 12
>cd00055 EGF_Lam Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies
Probab=58.91 E-value=5.8 Score=33.05 Aligned_cols=27 Identities=26% Similarity=0.548 Sum_probs=22.6
Q ss_pred CCceEEcccCCCCccCccceeCCCCcccCC
Q 002008 797 EVGTVTGKKCPKGLYGTFCKECPIGTYKDM 826 (983)
Q Consensus 797 ~~GTi~~~~CP~GlyG~fC~eCP~GtYK~~ 826 (983)
.+|.- .|++++.|..|++|+.|+|...
T Consensus 17 ~~G~C---~C~~~~~G~~C~~C~~g~~~~~ 43 (50)
T cd00055 17 GTGQC---ECKPNTTGRRCDRCAPGYYGLP 43 (50)
T ss_pred CCCEE---eCCCcCCCCCCCCCCCCCccCC
Confidence 34554 3999999999999999999875
No 13
>cd00185 TNFR Tumor necrosis factor receptor (TNFR) domain; superfamily of TNF-like receptor domains. When bound to TNF-like cytokines, TNFRs trigger multiple signal transduction pathways, they are involved in inflammation response, apoptosis, autoimmunity and organogenesis. TNFRs domains are elongated with generally three tandem repeats of cysteine-rich domains (CRDs). They fit in the grooves between protomers within the ligand trimer. Some TNFRs, such as NGFR and HveA, bind ligands with no structural similarity to TNF and do not bind ligand trimers.
Probab=56.86 E-value=11 Score=35.58 Aligned_cols=31 Identities=32% Similarity=0.901 Sum_probs=22.9
Q ss_pred CccceeCCCCcccCCCCC--CCCccccCCCCCC
Q 002008 812 GTFCKECPIGTYKDMEGS--DESLCTPCSLELL 842 (983)
Q Consensus 812 G~fC~eCP~GtYK~~~Gs--~~~lC~pC~~~~~ 842 (983)
+.-|..||+|+|-..... ....|.+|+..++
T Consensus 11 ~~cC~~C~pG~~~~~~C~~~~~t~C~~C~~g~y 43 (98)
T cd00185 11 GLCCDQCPPGTYLSKDCTPGSDTVCEPCPPGTY 43 (98)
T ss_pred CCCCCCCCCCccCCCcCCCCCCCeecCCCCCCc
Confidence 445999999999887532 2357999997543
No 14
>PF04519 Bactofilin: Polymer-forming cytoskeletal; InterPro: IPR007607 This family contains several uncharacterised hypothetical proteins.
Probab=56.34 E-value=90 Score=29.18 Aligned_cols=16 Identities=31% Similarity=0.470 Sum_probs=10.8
Q ss_pred EEEeeEEEccCceEEe
Q 002008 149 VSAANLTMDLNSSINT 164 (983)
Q Consensus 149 l~a~ni~i~~~S~Id~ 164 (983)
+.+..+.|.+++.|+-
T Consensus 82 i~~~~l~v~~ga~i~G 97 (101)
T PF04519_consen 82 ITAGKLEVEGGASING 97 (101)
T ss_pred EEECEEEEeCCCEEEE
Confidence 4566677777777763
No 15
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=54.38 E-value=31 Score=36.13 Aligned_cols=65 Identities=12% Similarity=0.233 Sum_probs=50.1
Q ss_pred EeccceEEeecccEEEcCCeeeeecCCCceEEEEeeeeEEEccCcEEEeeeEEEEEeeEEEccCceEE
Q 002008 96 YLNYDLYIYGTGNLEILPKISIVCPVEGCKITFNMSGNINMGQYAAIVAGSVVVSAANLTMDLNSSIN 163 (983)
Q Consensus 96 ~i~~~~~i~g~G~l~i~~~v~~~c~~~gc~i~v~~sG~~~l~~~s~i~ag~v~l~a~ni~i~~~S~Id 163 (983)
.|....++.+.++++|-++|.+ ..+|.+.+...+.++|++++.|-.+.......+++|.+++.|.
T Consensus 31 ~i~~pf~~~~~~~I~iG~~v~i---~~~~ri~~~~~~~i~IG~~v~Ig~~v~I~~~~~v~IG~~v~Ig 95 (192)
T PRK09677 31 IIRFPFYIRNDGSINFGEGFTS---GVGLRLDAFGRGKLFFGDNVQVNDYVHIACIESITIGRDTLIA 95 (192)
T ss_pred EEcCCEEEcCCCeEEECCceEE---CCCeEEEecCCCeEEECCCCEECCCcEEccCceEEECCCCEEC
Confidence 4555678888999999999877 8889888777889999998888666544445677777776665
No 16
>PF00053 Laminin_EGF: Laminin EGF-like (Domains III and V); InterPro: IPR002049 Laminins [] are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation. They are composed of distinct but related alpha, beta and gamma chains. The three chains form a cross-shaped molecule that consist of a long arm and three short globular arms. The long arm consist of a coiled coil structure contributed by all three chains and cross-linked by interchain disulphide bonds. Beside different types of globular domains each subunit contains, in its first half, consecutive repeats of about 60 amino acids in length that include eight conserved cysteines []. The tertiary structure [, ] of this domain is remotely similar in its N-terminal to that of the EGF-like module (see PDOC00021 from PROSITEDOC). It is known as a 'LE' or 'laminin-type EGF-like' domain. The number of copies of the LE domain in the different forms of laminins is highly variable; from 3 up to 22 copies have been found. A schematic representation of the topology of the four disulphide bonds in the LE domain is shown below. +-------------------+ +-|-----------+ | +--------+ +-----------------+ | | | | | | | | xxCxCxxxxxxxxxxxCxxxxxxxCxxCxxxxxGxxCxxCxxgaagxxxxxxxxxxxCxx sssssssssssssssssssssssssssssssssss 'C': conserved cysteine involved in a disulphide bond 'a': conserved aromatic residue 'G': conserved glycine (lower case = less conserved) 's': region similar to the EGF-like domain In mouse laminin gamma-1 chain, the seventh LE domain has been shown to be the only one that binds with a high affinity to nidogen []. The binding-sites are located on the surface within the loops C1-C3 and C5-C6 [, ]. Long consecutive arrays of LE domains in laminins form rod-like elements of limited flexibility [], which determine the spacing in the formation of laminin networks of basement membranes [].; PDB: 3TBD_A 3ZYG_B 3ZYI_B 2Y38_A 1KLO_A 1NPE_B 3ZYJ_B 1TLE_A.
Probab=53.48 E-value=6 Score=32.56 Aligned_cols=21 Identities=29% Similarity=0.659 Sum_probs=18.1
Q ss_pred CCCCccCccceeCCCCcccCC
Q 002008 806 CPKGLYGTFCKECPIGTYKDM 826 (983)
Q Consensus 806 CP~GlyG~fC~eCP~GtYK~~ 826 (983)
|++++.|.+|++|..|||...
T Consensus 22 C~~~~~G~~C~~C~~g~~~~~ 42 (49)
T PF00053_consen 22 CKPGTTGPRCDQCKPGYFGLP 42 (49)
T ss_dssp BSTTEESTTS-EE-TTEECST
T ss_pred ccccccCCcCcCCCCcccccc
Confidence 999999999999999999985
No 17
>KOG1056 consensus Glutamate-gated metabotropic ion channel receptor subunit GRM2 and related subunits, G-protein coupled receptor superfamily [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=50.81 E-value=22 Score=45.66 Aligned_cols=40 Identities=30% Similarity=0.589 Sum_probs=30.0
Q ss_pred EEcccCCCCcc----C-----ccceeCCCCcccCCCCCCCCccccCCCCCCCC
Q 002008 801 VTGKKCPKGLY----G-----TFCKECPIGTYKDMEGSDESLCTPCSLELLPR 844 (983)
Q Consensus 801 i~~~~CP~Gly----G-----~fC~eCP~GtYK~~~Gs~~~lC~pC~~~~~P~ 844 (983)
+=..+|-+|.. . +-|++|+...|++ |...|.+|+...-|.
T Consensus 493 ~CS~pC~~g~~k~~~~~~~ccw~c~~c~~~eY~~----d~~tc~~C~~~~wp~ 541 (878)
T KOG1056|consen 493 VCSEPCLPGQRKKVTKGVTCCWHCTPCMSYEYVN----DEFTCSDCQLGQWPN 541 (878)
T ss_pred cccCcCCcchhcccccCceeEEEcccCCCcceec----CcceeccCCcCcCCC
Confidence 33577888874 1 3499999999999 567899999765443
No 18
>KOG4289 consensus Cadherin EGF LAG seven-pass G-type receptor [Signal transduction mechanisms]
Probab=50.69 E-value=12 Score=49.67 Aligned_cols=78 Identities=26% Similarity=0.602 Sum_probs=50.3
Q ss_pred ccCCceEEcccCCCCccCccce-----eCCCCcccCCCCCCCCccccCCCC---------CCCC------cceeEEeeC-
Q 002008 795 FGEVGTVTGKKCPKGLYGTFCK-----ECPIGTYKDMEGSDESLCTPCSLE---------LLPR------RANFIYVRG- 853 (983)
Q Consensus 795 ~G~~GTi~~~~CP~GlyG~fC~-----eCP~GtYK~~~Gs~~~lC~pC~~~---------~~P~------ra~~~yv~~- 853 (983)
++.+| |.-.||+||+|.+|+ +||.|+|-+.+ |.||.-. ++.+ +.+|. .++
T Consensus 1734 p~a~G--Y~C~C~~g~~G~~Ce~~~dq~CPrGWWG~P~------CgpC~CavsKgfdp~CnKt~G~CqCKe~hy~-~~~~ 1804 (2531)
T KOG4289|consen 1734 PGAHG--YTCECPPGYTGPYCELRADQPCPRGWWGFPT------CGPCNCAVSKGFDPDCNKTNGQCQCKENHYR-PIGS 1804 (2531)
T ss_pred CCCCc--eeEECCCcccCcchhhhccCCCCCcccCCCC------ccCccccccCCCCCCccccCcceeecccccc-CCCc
Confidence 44455 447899999999995 89999998754 9998631 1111 11333 333
Q ss_pred --------CccCCCCCc----ccccccc--cCCccCChHHHH
Q 002008 854 --------GVSQPFCPY----ECISEKY--RMPKCYTPLEEL 881 (983)
Q Consensus 854 --------G~~~~~Cpy----~C~sdk~--~~p~C~tp~eel 881 (983)
|...+.|.. +|.++.. +-..|-.|+.|.
T Consensus 1805 Cl~CdC~~Gs~Sr~C~adGqC~C~pgaiGRqCdrCd~pfaev 1846 (2531)
T KOG4289|consen 1805 CLPCDCYFGSDSRECDADGQCPCKPGAIGRQCDRCDNPFAEV 1846 (2531)
T ss_pred ceeeccccCCCcccccCCCcCCCCCccccccccccCChhhhc
Confidence 345566653 2766654 338899999883
No 19
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=48.37 E-value=14 Score=41.39 Aligned_cols=36 Identities=31% Similarity=0.649 Sum_probs=28.3
Q ss_pred EEcccCCCCccC---------ccceeCCCCcccCCCCCCCCccccCCC
Q 002008 801 VTGKKCPKGLYG---------TFCKECPIGTYKDMEGSDESLCTPCSL 839 (983)
Q Consensus 801 i~~~~CP~GlyG---------~fC~eCP~GtYK~~~Gs~~~lC~pC~~ 839 (983)
++-..|+|||.- .=|+-|++|||+-. +...|++|..
T Consensus 217 v~idsC~PGfG~N~~~h~~C~~CCVvCsPgTysp~---~~~~C~~C~~ 261 (271)
T PF07354_consen 217 VRIDSCRPGFGKNDILHSDCPSCCVVCSPGTYSPD---DDVHCQQCNS 261 (271)
T ss_pred EEeeccCCCCCcCcccCCCCCCeeEECCCcccCCC---CCceEEecCc
Confidence 444788888862 34999999999996 4558999996
No 20
>cd00064 FU Furin-like repeats. Cysteine rich region. Exact function of the domain is not known. Furin is a serine-kinase dependent proprotein processor. Other members of this family include endoproteases and cell surface receptors.
Probab=43.86 E-value=18 Score=29.67 Aligned_cols=9 Identities=44% Similarity=1.198 Sum_probs=4.6
Q ss_pred ceeCCCCcc
Q 002008 815 CKECPIGTY 823 (983)
Q Consensus 815 C~eCP~GtY 823 (983)
|..|+.++|
T Consensus 17 C~~C~~~~~ 25 (49)
T cd00064 17 CTSCRHGFY 25 (49)
T ss_pred CccCcCccC
Confidence 555555554
No 21
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=41.81 E-value=73 Score=32.49 Aligned_cols=70 Identities=21% Similarity=0.344 Sum_probs=44.6
Q ss_pred EEeceeEeccceEEeecccEEEcCCeeeeecCCCceEE--------------EEeeeeEEEccCcEEEeeeEEEEEeeEE
Q 002008 90 LLNSNLYLNYDLYIYGTGNLEILPKISIVCPVEGCKIT--------------FNMSGNINMGQYAAIVAGSVVVSAANLT 155 (983)
Q Consensus 90 ~l~~~~~i~~~~~i~g~G~l~i~~~v~~~c~~~gc~i~--------------v~~sG~~~l~~~s~i~ag~v~l~a~ni~ 155 (983)
.|-..+.|+.+..|...++++|-+++.| .++|.|. ....+.++|++++.|-++.+.+ .+++
T Consensus 64 ~IG~~v~I~~~~~i~~~~~i~IG~~v~I---g~~~~I~~~~h~~~~~~~~~~~~~~~~v~IG~~~~Ig~~a~I~--~gv~ 138 (169)
T cd03357 64 HIGDNFYANFNCTILDVAPVTIGDNVLI---GPNVQIYTAGHPLDPEERNRGLEYAKPITIGDNVWIGGGVIIL--PGVT 138 (169)
T ss_pred EECCCceEcCCEEEeccCcEEECCCCEE---CCCCEEEeCCCCCChhHccccceecCCcEeCCCEEECCCCEEe--CCCE
Confidence 4556666666666666677777777765 5555553 1235678888888777665553 4566
Q ss_pred EccCceEEe
Q 002008 156 MDLNSSINT 164 (983)
Q Consensus 156 i~~~S~Id~ 164 (983)
|.+++.|-.
T Consensus 139 Ig~~~~Vga 147 (169)
T cd03357 139 IGDNSVIGA 147 (169)
T ss_pred ECCCCEECC
Confidence 666666543
No 22
>KOG1836 consensus Extracellular matrix glycoprotein Laminin subunits alpha and gamma [Extracellular structures]
Probab=37.15 E-value=24 Score=48.27 Aligned_cols=43 Identities=33% Similarity=0.690 Sum_probs=35.7
Q ss_pred CceEEcccCCCCccCccceeCCCCcccCCCCCC--CCccccCCCC
Q 002008 798 VGTVTGKKCPKGLYGTFCKECPIGTYKDMEGSD--ESLCTPCSLE 840 (983)
Q Consensus 798 ~GTi~~~~CP~GlyG~fC~eCP~GtYK~~~Gs~--~~lC~pC~~~ 840 (983)
.-++.-|.||+||.|..|++|.-|||=+..+-+ ...|++|+-+
T Consensus 794 ~~~~iCk~Cp~gytG~rCe~c~dgyfg~p~~~~~~~~~c~~c~c~ 838 (1705)
T KOG1836|consen 794 ILEVVCKNCPPGYTGLRCEECADGYFGNPLGHDGDVRPCQSCQCN 838 (1705)
T ss_pred ccceecCCCCCCCcccccccCCCccccCCCCCCCCcccCccceec
Confidence 566777999999999999999999999986443 2489999963
No 23
>COG4698 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.08 E-value=33 Score=36.66 Aligned_cols=53 Identities=26% Similarity=0.316 Sum_probs=26.4
Q ss_pred hhhHHHHHHHHHHHHHHHhheeeecCCCCCcccccccccccccccch---hhhhhhhcc
Q 002008 890 PFVLLLSCILVLLALLLSTLRIKLVGSSPSYREHSIERHSRHHFPYL---LSLSEVRGT 945 (983)
Q Consensus 890 ~F~L~l~~llillalv~s~~R~K~~~~d~~~~~~~~~~~~~~sfp~l---eSl~E~~~~ 945 (983)
+|.++ +.|.+++| ++.++|.--.+.+..+...+.+ .++.+|.++ ++|||..+.
T Consensus 14 ~f~iL-LAln~l~~-~~i~~~vlsp~ee~t~~~~a~~-~~~~~fqitttr~~LN~li~s 69 (197)
T COG4698 14 LFFIL-LALNTLLA-VLIALFVLSPREEPTHLEDASE-KSEKSFQITTTRSQLNELINS 69 (197)
T ss_pred HHHHH-HHHHHHHH-HHhheeeccCCCCCchhhccCc-ccceeEEEEccHHHHHHHHHH
Confidence 44443 34444444 3334444222333444443333 366777765 677777665
No 24
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=31.90 E-value=1.2e+02 Score=31.93 Aligned_cols=70 Identities=19% Similarity=0.316 Sum_probs=42.3
Q ss_pred EEeceeEeccceEEeecccEEEcCCeeeeecCCCceEE--------------EEeeeeEEEccCcEEEeeeEEEEEeeEE
Q 002008 90 LLNSNLYLNYDLYIYGTGNLEILPKISIVCPVEGCKIT--------------FNMSGNINMGQYAAIVAGSVVVSAANLT 155 (983)
Q Consensus 90 ~l~~~~~i~~~~~i~g~G~l~i~~~v~~~c~~~gc~i~--------------v~~sG~~~l~~~s~i~ag~v~l~a~ni~ 155 (983)
.|-..+.|..+++|...+.++|-++|.| .++|.|. ....+.++|++++.|-++.+.+ ..++
T Consensus 75 ~iG~~~~in~~~~i~d~~~I~IGd~v~I---~~~v~i~t~~h~~~~~~~~~~~~~~~~v~IGd~v~IG~~a~I~--~gv~ 149 (183)
T PRK10092 75 FLGNNFYANFDCVMLDVCPIRIGDNCML---APGVHIYTATHPLDPVARNSGAELGKPVTIGNNVWIGGRAVIN--PGVT 149 (183)
T ss_pred EEcCCcEECCceEEecCceEEECCCCEE---CCCCEEEcCCCCCChHHccccceecCCeEECCCcEECCCCEEC--CCCE
Confidence 4555556666666666666777777765 4555553 2234678888877775554332 4556
Q ss_pred EccCceEEe
Q 002008 156 MDLNSSINT 164 (983)
Q Consensus 156 i~~~S~Id~ 164 (983)
|.+++.|.+
T Consensus 150 IG~~~vIga 158 (183)
T PRK10092 150 IGDNVVVAS 158 (183)
T ss_pred ECCCCEECC
Confidence 666666643
No 25
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=30.58 E-value=1.4e+02 Score=38.96 Aligned_cols=93 Identities=38% Similarity=0.608 Sum_probs=0.0
Q ss_pred CcccccC-CCCCCCCCCCCCCccccCCccccCccccCCCCCCCccCCCCCCCCCCCCCcccceEEEEeeecccceeEeee
Q 002008 613 GKGIYSH-GAGSGAGHGGRGGSGFFNGRLINGGHKYGNADLPCELGSGAEGPNESYAPAIGGGMIVMGSIQWPLFRLDIY 691 (983)
Q Consensus 613 G~G~~~~-~~g~GGgHGG~GG~g~~~~~~~~gG~~Yg~~~lP~~~GSGGgG~~~~~~gGaGGGiI~i~a~~~~l~~l~~~ 691 (983)
|.+.+.+ +-|+|.+.||+|.-| ||.+.-++--++|+ |-...+.|-.+|| ...+
T Consensus 1185 GgssysgGGYGggys~gGygsGG------------YGgsa~~~~~~~Ga-gvg~GyrGvsrgG-------------frnn 1238 (1282)
T KOG0921|consen 1185 GGSSYSGGGYGGGYSGGGYGSGG------------YGGSAPSARANYGA-GVGNGYRGVSRGG-------------FRNN 1238 (1282)
T ss_pred CCCCCCCCCcCCCCCCCCcCCCC------------CCCCCCCCCCCccc-cccCCCccccCCc-------------cccC
Q ss_pred eEEEeCCCCCCCccccCCCCcccCCCccccchhheeecccccCCcceEEeccCCCCCCCccccCcc
Q 002008 692 GSVKADGESVGKKTINGNSSLIGGLGGGSGGTILLFLQELTLEDNSSVSVVGGSGGPPGGGGGGGG 757 (983)
Q Consensus 692 G~i~AdG~s~~~~~~~~n~~~~~g~GGGSGGSIlL~l~~~~l~g~g~isA~GG~Gg~~ggGGGGGG 757 (983)
| |+++.+..+--++++..+.|||+| +|.++..++|++||+
T Consensus 1239 g-----gGdyrnpgggyrgsGGfgrgggrg---------------------agggGgfg~G~~Gg~ 1278 (1282)
T KOG0921|consen 1239 G-----GGDYRNPGGGYRGSGGFGRGGGRG---------------------AGGGGGFGGGGRGGN 1278 (1282)
T ss_pred C-----CCCCCCCCCCccCCCCcCCCCCCC---------------------CCCCCCCCCCCcccc
No 26
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=30.55 E-value=60 Score=35.07 Aligned_cols=35 Identities=43% Similarity=0.518 Sum_probs=24.2
Q ss_pred EEEcCCeeeeecCCCceEEEEeeeeEEEccCcEEEeeeEEEE
Q 002008 109 LEILPKISIVCPVEGCKITFNMSGNINMGQYAAIVAGSVVVS 150 (983)
Q Consensus 109 l~i~~~v~~~c~~~gc~i~v~~sG~~~l~~~s~i~ag~v~l~ 150 (983)
=.|-++|.| .+|+. +-||++|++|++|=|++|++.
T Consensus 120 PtIg~~V~I---GagAk----ILG~I~IGd~akIGA~sVVlk 154 (194)
T COG1045 120 PTIGNGVYI---GAGAK----ILGNIEIGDNAKIGAGSVVLK 154 (194)
T ss_pred CccCCCeEE---CCCCE----EEcceEECCCCEECCCceEcc
Confidence 345555544 44533 458899999999988888775
No 27
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=29.77 E-value=1.2e+02 Score=32.65 Aligned_cols=70 Identities=23% Similarity=0.288 Sum_probs=41.1
Q ss_pred EEeceeEeccceEEeecccEEEcCCeeeeecCCCceEEEE--------------eeeeEEEccCcEEEeeeEEEEEeeEE
Q 002008 90 LLNSNLYLNYDLYIYGTGNLEILPKISIVCPVEGCKITFN--------------MSGNINMGQYAAIVAGSVVVSAANLT 155 (983)
Q Consensus 90 ~l~~~~~i~~~~~i~g~G~l~i~~~v~~~c~~~gc~i~v~--------------~sG~~~l~~~s~i~ag~v~l~a~ni~ 155 (983)
.|-+.+.|..+..|...++++|-+++.| .++|.|.-. ....++|++++.|-++.+.+ .+++
T Consensus 77 ~IG~~v~In~~~~I~d~~~I~IGd~v~I---g~~v~I~~~~h~~~~~~r~~g~~~~~pi~IGd~v~IG~~~~I~--~gv~ 151 (203)
T PRK09527 77 HIGRNFYANFNLTIVDDYTVTIGDNVLI---APNVTLSVTGHPVHHELRKNGEMYSFPITIGNNVWIGSHVVIN--PGVT 151 (203)
T ss_pred EEcCCcEECCCcEEecCCCEEECCCCEE---CCCCEEEeCCCCCChhhccccccccCCeEECCCcEECCCCEEc--CCCE
Confidence 4555666666666666677777777765 556655421 12347777777776664433 4455
Q ss_pred EccCceEEe
Q 002008 156 MDLNSSINT 164 (983)
Q Consensus 156 i~~~S~Id~ 164 (983)
|.+++.|-+
T Consensus 152 IG~~~vIga 160 (203)
T PRK09527 152 IGDNSVIGA 160 (203)
T ss_pred ECCCCEECC
Confidence 555555543
No 28
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=29.45 E-value=1.5e+02 Score=27.91 Aligned_cols=67 Identities=18% Similarity=0.278 Sum_probs=35.9
Q ss_pred eceeEeccceEEeecccEEEcCCeeeeecCCCceEE-----------EEeeeeEEEccCcEEEeeeEEEEEeeEEEccCc
Q 002008 92 NSNLYLNYDLYIYGTGNLEILPKISIVCPVEGCKIT-----------FNMSGNINMGQYAAIVAGSVVVSAANLTMDLNS 160 (983)
Q Consensus 92 ~~~~~i~~~~~i~g~G~l~i~~~v~~~c~~~gc~i~-----------v~~sG~~~l~~~s~i~ag~v~l~a~ni~i~~~S 160 (983)
-+.+.|...++|...+.++|-+++.| .++|.|. -.+.+.++|++++.|-++.+.+ ..++|.+++
T Consensus 7 G~~~~I~~~~~i~~~~~i~IG~~~~I---~~~~~I~~~~h~~~~~~~~~~~~~v~Ig~~~~ig~~~~i~--~g~~Ig~~~ 81 (107)
T cd05825 7 GDNSWIGEGVWIYNLAPVTIGSDACI---SQGAYLCTGSHDYRSPAFPLITAPIVIGDGAWVAAEAFVG--PGVTIGEGA 81 (107)
T ss_pred CCCCEECCCCEEeeCCceEECCCCEE---CCCeEeecCCCCCCcCccceecCCEEECCCCEECCCCEEC--CCCEECCCC
Confidence 34455555555555556666666655 3344442 1245677788777776664432 344455544
Q ss_pred eEE
Q 002008 161 SIN 163 (983)
Q Consensus 161 ~Id 163 (983)
.|-
T Consensus 82 ~i~ 84 (107)
T cd05825 82 VVG 84 (107)
T ss_pred EEC
Confidence 443
No 29
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=29.05 E-value=57 Score=36.75 Aligned_cols=19 Identities=0% Similarity=-0.045 Sum_probs=8.6
Q ss_pred ceEEEeceeEeccceEEee
Q 002008 87 TTCLLNSNLYLNYDLYIYG 105 (983)
Q Consensus 87 t~c~l~~~~~i~~~~~i~g 105 (983)
+-|.|...+.|+..++|..
T Consensus 140 ~gidI~~~a~IG~g~~I~h 158 (273)
T PRK11132 140 FQVDIHPAAKIGRGIMLDH 158 (273)
T ss_pred eeeEecCcceECCCeEEcC
Confidence 3344444444444444443
No 30
>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=28.76 E-value=18 Score=23.11 Aligned_cols=11 Identities=45% Similarity=1.183 Sum_probs=8.4
Q ss_pred cCCCCccCccc
Q 002008 805 KCPKGLYGTFC 815 (983)
Q Consensus 805 ~CP~GlyG~fC 815 (983)
.||+||.|..|
T Consensus 3 ~C~~G~~G~~C 13 (13)
T PF12661_consen 3 QCPPGWTGPNC 13 (13)
T ss_dssp EE-TTEETTTT
T ss_pred cCcCCCcCCCC
Confidence 48999999887
No 31
>KOG4260 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.35 E-value=23 Score=39.97 Aligned_cols=44 Identities=27% Similarity=0.652 Sum_probs=31.6
Q ss_pred CCcccCCceEEcccCCCCccCccceeCCCCcccCCCCCCCCccccCC
Q 002008 792 TGLFGEVGTVTGKKCPKGLYGTFCKECPIGTYKDMEGSDESLCTPCS 838 (983)
Q Consensus 792 ~g~~G~~GTi~~~~CP~GlyG~fC~eCP~GtYK~~~Gs~~~lC~pC~ 838 (983)
+|-...+|. =.|.+||.|..|.+|..++|...---....|+.|.
T Consensus 161 dGsR~GsGk---CkC~~GY~Gp~C~~Cg~eyfes~Rne~~lvCt~Ch 204 (350)
T KOG4260|consen 161 DGSREGSGK---CKCETGYTGPLCRYCGIEYFESSRNEQHLVCTACH 204 (350)
T ss_pred CCCCCCCCc---ccccCCCCCccccccchHHHHhhcccccchhhhhh
Confidence 344445554 37999999999999999999765322335677766
No 32
>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]
Probab=25.25 E-value=47 Score=42.47 Aligned_cols=34 Identities=32% Similarity=0.841 Sum_probs=26.6
Q ss_pred EEcccCCCCcc----C-ccceeCCCCcccCCCCCCCCcc
Q 002008 801 VTGKKCPKGLY----G-TFCKECPIGTYKDMEGSDESLC 834 (983)
Q Consensus 801 i~~~~CP~Gly----G-~fC~eCP~GtYK~~~Gs~~~lC 834 (983)
-.-.+||+|+| + ..|.+||+..+....|+..=.|
T Consensus 274 ~~C~aCp~G~yK~~~~~~~C~~CP~~S~s~~ega~~C~C 312 (996)
T KOG0196|consen 274 KACQACPPGTYKASQGDSLCLPCPPNSHSSSEGATSCTC 312 (996)
T ss_pred CcceeCCCCcccCCCCCCCCCCCCCCCCCCCCCCCcccc
Confidence 34589999998 2 4499999999998888765444
No 33
>PLN02357 serine acetyltransferase
Probab=24.13 E-value=1.8e+02 Score=34.17 Aligned_cols=26 Identities=4% Similarity=-0.004 Sum_probs=12.7
Q ss_pred EEEeceeEeccceEEeecccEEEcCC
Q 002008 89 CLLNSNLYLNYDLYIYGTGNLEILPK 114 (983)
Q Consensus 89 c~l~~~~~i~~~~~i~g~G~l~i~~~ 114 (983)
|.|...+.|+..++|.+...+.|-++
T Consensus 227 vdI~p~a~IG~Gv~Idh~~giVIGe~ 252 (360)
T PLN02357 227 VDIHPGAKIGQGILLDHATGVVIGET 252 (360)
T ss_pred eeeCCCCEECCCeEECCCCceEECCC
Confidence 44555555555555554333333333
No 34
>PRK09458 pspB phage shock protein B; Provisional
Probab=23.87 E-value=30 Score=32.15 Aligned_cols=23 Identities=13% Similarity=0.216 Sum_probs=16.2
Q ss_pred hhhHHHHHHHHHHHHHHHhheee
Q 002008 890 PFVLLLSCILVLLALLLSTLRIK 912 (983)
Q Consensus 890 ~F~L~l~~llillalv~s~~R~K 912 (983)
.|.+.++++++++|-+|.+++-+
T Consensus 5 fl~~PliiF~ifVaPiWL~LHY~ 27 (75)
T PRK09458 5 FLAIPLTIFVLFVAPIWLWLHYR 27 (75)
T ss_pred HHHHhHHHHHHHHHHHHHHHhhc
Confidence 34555778888888888877643
No 35
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=23.64 E-value=22 Score=32.93 Aligned_cols=23 Identities=17% Similarity=0.247 Sum_probs=15.6
Q ss_pred hhhHHHHHHHHHHHHHHHhheee
Q 002008 890 PFVLLLSCILVLLALLLSTLRIK 912 (983)
Q Consensus 890 ~F~L~l~~llillalv~s~~R~K 912 (983)
.+.+.++++++++|.+|.+++..
T Consensus 5 fl~~Pliif~ifVap~wl~lHY~ 27 (75)
T TIGR02976 5 FLAIPLIIFVIFVAPLWLILHYR 27 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667777788888777654
No 36
>PRK10502 putative acyl transferase; Provisional
Probab=23.39 E-value=1.7e+02 Score=30.36 Aligned_cols=69 Identities=14% Similarity=0.271 Sum_probs=36.7
Q ss_pred EeceeEeccceEEeecccEEEcCCeeeeecCCCceEEE-----------EeeeeEEEccCcEEEeeeEEEEEeeEEEccC
Q 002008 91 LNSNLYLNYDLYIYGTGNLEILPKISIVCPVEGCKITF-----------NMSGNINMGQYAAIVAGSVVVSAANLTMDLN 159 (983)
Q Consensus 91 l~~~~~i~~~~~i~g~G~l~i~~~v~~~c~~~gc~i~v-----------~~sG~~~l~~~s~i~ag~v~l~a~ni~i~~~ 159 (983)
|-+.+.|..++.|+....++|-+++.+. .+|.|.. .+.+.++|++++.|-++.+.+ ..++|.++
T Consensus 74 IG~~~~Ig~~~~I~~~~~v~IG~~~~I~---~~~~I~~~~h~~~~~~~~~~~~~i~Igd~~~Ig~~a~I~--~Gv~Ig~~ 148 (182)
T PRK10502 74 IGDYAWIGDDVWLYNLGEITIGAHCVIS---QKSYLCTGSHDYSDPHFDLNTAPIVIGEGCWLAADVFVA--PGVTIGSG 148 (182)
T ss_pred ECCCeEECCCceecccCceEECCCcEEC---CCeEEECCCCCCcCCCcccccCCEEEcCCcEEcCCCEEc--CCCEECCC
Confidence 3344444444444444455565555552 3443321 124667788777777665443 45556666
Q ss_pred ceEEe
Q 002008 160 SSINT 164 (983)
Q Consensus 160 S~Id~ 164 (983)
+.|-+
T Consensus 149 ~vIga 153 (182)
T PRK10502 149 AVVGA 153 (182)
T ss_pred CEECC
Confidence 66653
No 37
>PRK11548 outer membrane biogenesis protein BamE; Provisional
Probab=23.28 E-value=62 Score=31.52 Aligned_cols=38 Identities=21% Similarity=0.141 Sum_probs=21.1
Q ss_pred CCccchhhHHHHHHHHhhhhhccccc-cCCCCCCccccCCCccc
Q 002008 1 MHPFLMRSYLWWCILLGYLYVSTLSF-SSGQYLDRAIQSGNWLH 43 (983)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ld~~~~~~~~~~ 43 (983)
||++. +..+++++.+++++|+. ++.+| .+...-|+++.
T Consensus 1 m~~~~----~~~~~~~~~~~LsgCs~~~~~~y-~~~v~qG~~~~ 39 (113)
T PRK11548 1 MRCKT----LTAAAAVLLMLTAGCSTLERVVY-RPDINQGNYLT 39 (113)
T ss_pred CcchH----HHHHHHHHHHHHcccCCCCcccc-cccCCccccCC
Confidence 55554 33444455578999984 45554 23344566443
No 38
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=23.01 E-value=2.1e+02 Score=34.61 Aligned_cols=28 Identities=21% Similarity=0.290 Sum_probs=12.8
Q ss_pred EEeceeEeccceEEee----cccEEEcCCeee
Q 002008 90 LLNSNLYLNYDLYIYG----TGNLEILPKISI 117 (983)
Q Consensus 90 ~l~~~~~i~~~~~i~g----~G~l~i~~~v~~ 117 (983)
.|..++.|..|+.|+- .|+.+|-++|.|
T Consensus 264 ~i~~dv~ig~DvvI~p~v~l~G~t~ig~~v~i 295 (460)
T COG1207 264 YIRGDVEIGRDVVIEPNVILEGNTVIGDNVVI 295 (460)
T ss_pred EEcCcEEECCceEEecCcEEeeeEEECCceEE
Confidence 3444444444444443 444444444444
No 39
>PF00020 TNFR_c6: TNFR/NGFR cysteine-rich region; InterPro: IPR001368 A number of proteins, some of which are known to be receptors for growth factors have been found to contain a cysteine-rich domain at the N-terminal region that can be subdivided into four (or in some cases, three) repeats containing six conserved cysteines all of which are involved in intrachain disulphide bonds []. CD27 (also called S152 or T14) mediates a co-stimulatory signal for T and B cell activation and is involved in murine T cell development. Tyrosine-phosphorylation of ZAP-70 following CD27 ligation of T cells has been reported [], but not confirmed independently. CD30 was originally identified as Ki-1, an antigen expressed on Reed-Sternberg cells in Hodgkin's lymphomas and other non-Hodgkin's lymphomas, particularly diffuse large-cell lymphoma and immunoblastic lymphoma. CD30 has pleiotropic effects on CD30-positive lymphoma cell lines ranging from cell proliferation to cell death. It is thought to be involved in negative selection of T-cells in the thymus and is involved in TCR-mediated cell death. CD30 is a member of the TNFR family of molecules, activate NFkB through interaction with TRAF2 and TRAF5. CD40 (Bp50) plays a central role in the regulation of cell-mediated immunity as well as antibody mediated immunity. It is central to T cell dependent (TD)-responses and may influence survival of B cell lymphomas. CD95 (also called APO-1, fas antigen, Fas tumour necrosis factor receptor superfamily, member 6, TNFRSF6 or apoptosis antigen 1, APT1) is expressed, typically at high levels, on activated T and B cells. It is involved in the mediation of apoptosis-inducing signals. Other proteins known to belong to this family [, , , ] are, tumour Necrosis Factor type I and type II receptors (TNFR), Rabbit fibroma virus soluble TNF receptor (protein T2), lymphotoxin alpha/beta receptor, low-affinity nerve growth factor receptor (LA-NGFR) (p75), T-cell antigen OX40, Wsl-1, a receptor (for a yet undefined ligand) that mediates apoptosis and Vaccinia virus protein A53 (SalF19R). CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/).; GO: 0005488 binding; PDB: 3TJE_F 3QD6_S 3ALQ_U 3IJ2_Y 3BUK_D 1SG1_X 1NCF_B 1EXT_A 1FT4_B 1TNR_R ....
Probab=22.97 E-value=31 Score=27.30 Aligned_cols=19 Identities=58% Similarity=1.242 Sum_probs=13.7
Q ss_pred CCCCcccCCCCCCCCccccCC
Q 002008 818 CPIGTYKDMEGSDESLCTPCS 838 (983)
Q Consensus 818 CP~GtYK~~~Gs~~~lC~pC~ 838 (983)
||.|+|.+..+. ..|++|.
T Consensus 1 C~~g~y~~~~~~--~~C~~C~ 19 (39)
T PF00020_consen 1 CPPGTYSDSENH--PQCLPCS 19 (39)
T ss_dssp ECTTEEEESSCS--SSEEEEE
T ss_pred CccCcccCCCCC--CcCCccC
Confidence 899999997533 5676654
No 40
>KOG4258 consensus Insulin/growth factor receptor (contains protein kinase domain) [Signal transduction mechanisms]
Probab=22.89 E-value=57 Score=41.90 Aligned_cols=28 Identities=11% Similarity=0.355 Sum_probs=17.3
Q ss_pred cchhcccceEEEEEecCCCCCCCccCCC
Q 002008 946 RAEETQSHVHRMYFMGPNTFREPWHLPY 973 (983)
Q Consensus 946 ~~eDl~~HvhRmYf~G~NTf~~PW~Lp~ 973 (983)
|-+.|..--+-+|+.=|-..++=|.-.|
T Consensus 409 rGd~l~~~~Ys~yv~dN~nL~qLwd~~~ 436 (1025)
T KOG4258|consen 409 RGDPLEEGNYSFYVLDNQNLQQLWDWSH 436 (1025)
T ss_pred ccchhhcCceEEEEecCcCHHhcCCccc
Confidence 5556666666677776666666665443
No 41
>PLN02357 serine acetyltransferase
Probab=22.86 E-value=97 Score=36.36 Aligned_cols=55 Identities=35% Similarity=0.441 Sum_probs=29.2
Q ss_pred eEEEeceeEeccceEEeecc------cEEEcCCeeeeecCCCceEEEEeeeeEEEccCcEEEeeeEEE
Q 002008 88 TCLLNSNLYLNYDLYIYGTG------NLEILPKISIVCPVEGCKITFNMSGNINMGQYAAIVAGSVVV 149 (983)
Q Consensus 88 ~c~l~~~~~i~~~~~i~g~G------~l~i~~~v~~~c~~~gc~i~v~~sG~~~l~~~s~i~ag~v~l 149 (983)
.|+|-+.+.|..+++|.+.| +-.|-++|.| .++ ..+.|+++|++++.|-++.+++
T Consensus 252 ~avIGdnV~I~~gVtIGg~g~~~g~~~piIGd~V~I---Gag----A~IlggV~IGdga~IGAgSVV~ 312 (360)
T PLN02357 252 TAVVGNNVSILHNVTLGGTGKQSGDRHPKIGDGVLI---GAG----TCILGNITIGEGAKIGAGSVVL 312 (360)
T ss_pred CCEECCCCEEeCCceecCccccCCccCceeCCCeEE---CCc----eEEECCeEECCCCEECCCCEEC
Confidence 44555555555555555532 2334444433 223 1234677777777777765554
No 42
>PF15050 SCIMP: SCIMP protein
Probab=22.50 E-value=78 Score=32.02 Aligned_cols=25 Identities=24% Similarity=0.219 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHhh-eeeecCCCCCcc
Q 002008 897 CILVLLALLLSTL-RIKLVGSSPSYR 921 (983)
Q Consensus 897 ~llillalv~s~~-R~K~~~~d~~~~ 921 (983)
++.+.|.++++|+ |.++....+...
T Consensus 18 ~vS~~lglIlyCvcR~~lRqGkkwei 43 (133)
T PF15050_consen 18 LVSVVLGLILYCVCRWQLRQGKKWEI 43 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHcccccee
Confidence 4444566777755 655544434433
No 43
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=21.01 E-value=2.3e+02 Score=32.00 Aligned_cols=67 Identities=28% Similarity=0.433 Sum_probs=37.2
Q ss_pred ccceEEEeceeEeccceEEeecc------cEEEcCCeeeeecCCCceEEEEeeeeEEEccCcEEEeeeEEEEEeeEEEcc
Q 002008 85 LNTTCLLNSNLYLNYDLYIYGTG------NLEILPKISIVCPVEGCKITFNMSGNINMGQYAAIVAGSVVVSAANLTMDL 158 (983)
Q Consensus 85 ~~t~c~l~~~~~i~~~~~i~g~G------~l~i~~~v~~~c~~~gc~i~v~~sG~~~l~~~s~i~ag~v~l~a~ni~i~~ 158 (983)
.+..|+|-+.++|..+++|-|++ .-.|-++|.| .++|. +.|+++|++++.|-+++++.. .|.+
T Consensus 164 IG~~a~IGdnv~I~~~VtiGg~~~~~~~~~p~IGd~V~I---Gaga~----Ilggv~IG~~a~IGAgSvV~~----dVp~ 232 (273)
T PRK11132 164 IGETAVIENDVSILQSVTLGGTGKTSGDRHPKIREGVMI---GAGAK----ILGNIEVGRGAKIGAGSVVLQ----PVPP 232 (273)
T ss_pred ECCCCEECCCCEEcCCcEEecCcccCCCcCCEECCCcEE---cCCCE----EcCCCEECCCCEECCCCEECc----ccCC
Confidence 44556666666666666665543 2344444444 33332 347777777777777766653 2455
Q ss_pred CceE
Q 002008 159 NSSI 162 (983)
Q Consensus 159 ~S~I 162 (983)
++++
T Consensus 233 ~~~v 236 (273)
T PRK11132 233 HTTA 236 (273)
T ss_pred CcEE
Confidence 4444
No 44
>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]
Probab=20.58 E-value=1.6e+02 Score=32.89 Aligned_cols=23 Identities=43% Similarity=0.700 Sum_probs=19.3
Q ss_pred EEeeeeEEEccCcEEEeeeEEEE
Q 002008 128 FNMSGNINMGQYAAIVAGSVVVS 150 (983)
Q Consensus 128 v~~sG~~~l~~~s~i~ag~v~l~ 150 (983)
+.+-|+++|+++++|-||++++.
T Consensus 213 vtILgnV~IGegavIaAGsvV~k 235 (269)
T KOG4750|consen 213 VTILGNVTIGEGAVIAAGSVVLK 235 (269)
T ss_pred cEEeCCeeECCCcEEeccceEEe
Confidence 45679999999999999988764
No 45
>PF00757 Furin-like: Furin-like cysteine rich region; InterPro: IPR006211 The furin-like cysteine rich region has been found in a variety of proteins from eukaryotes that are involved in the mechanism of signal transduction by receptor tyrosine kinases, which involves receptor aggregation [].; GO: 0004714 transmembrane receptor protein tyrosine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation, 0007169 transmembrane receptor protein tyrosine kinase signaling pathway, 0016020 membrane; PDB: 3U2P_A 2AHX_B 1N8Y_C 1IGR_A 1S78_A 3MZW_A 2A91_A 1N8Z_C 3N85_A 3H3B_B ....
Probab=20.40 E-value=40 Score=34.61 Aligned_cols=21 Identities=52% Similarity=1.206 Sum_probs=12.3
Q ss_pred CceEEcccCCCCcc--Cccce---eCC
Q 002008 798 VGTVTGKKCPKGLY--GTFCK---ECP 819 (983)
Q Consensus 798 ~GTi~~~~CP~Gly--G~fC~---eCP 819 (983)
+|+=. ..||+++| +.+|+ +||
T Consensus 76 ~g~Cv-~~CP~~~Y~~~~rCVt~~~C~ 101 (149)
T PF00757_consen 76 NGTCV-EQCPPGKYEFGRRCVTKEECP 101 (149)
T ss_dssp TTEEE-SS-STT-EEETTEEE-HSSHH
T ss_pred CCeec-ccCChhhcccccEeeccccCC
Confidence 55555 77888775 66676 566
No 46
>PLN02739 serine acetyltransferase
Probab=20.15 E-value=2e+02 Score=33.91 Aligned_cols=17 Identities=53% Similarity=0.814 Sum_probs=7.4
Q ss_pred eeEEEccCcEEEeeeEE
Q 002008 132 GNINMGQYAAIVAGSVV 148 (983)
Q Consensus 132 G~~~l~~~s~i~ag~v~ 148 (983)
|+++|++++.|-++.++
T Consensus 274 G~V~IGd~aiIGAGSVV 290 (355)
T PLN02739 274 GNISIGAGAMVAAGSLV 290 (355)
T ss_pred CCeEECCCCEECCCCEE
Confidence 44444444444444333
Done!