Query 002008
Match_columns 983
No_of_seqs 173 out of 190
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 08:28:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002008.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002008hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jma_B Herpesvirus entry media 93.3 0.058 2E-06 53.6 4.2 65 802-870 15-89 (167)
2 2uwi_A CRME protein; receptor, 93.1 0.062 2.1E-06 52.4 4.0 63 801-869 15-88 (142)
3 2hey_R Tumor necrosis factor r 92.8 0.067 2.3E-06 52.0 3.7 61 803-869 19-90 (146)
4 4fhq_A Tumor necrosis factor r 92.7 0.068 2.3E-06 51.9 3.7 62 803-869 18-90 (134)
5 3tje_F Tumor necrosis factor r 91.8 0.14 4.8E-06 50.9 4.7 63 803-870 44-119 (156)
6 3fl7_A Ephrin receptor; ATP-bi 91.2 0.061 2.1E-06 62.6 1.7 36 804-841 265-302 (536)
7 1ext_A Tumor necrosis factor r 90.6 0.16 5.4E-06 50.2 3.7 63 802-869 19-93 (162)
8 3me4_A Tumor necrosis factor r 90.2 0.19 6.6E-06 52.3 4.1 65 800-869 43-118 (216)
9 1du3_A Death receptor 5; trail 89.8 0.24 8.2E-06 47.6 4.1 64 800-870 22-92 (130)
10 3alq_R Tumor necrosis factor r 89.4 0.25 8.4E-06 49.3 4.0 63 801-869 20-93 (173)
11 3u3p_A Tumor necrosis factor r 89.3 0.21 7.2E-06 54.9 3.7 39 800-839 23-70 (313)
12 3k51_B Decoy receptor 3; DCR3, 89.0 0.27 9.3E-06 49.6 4.0 63 801-869 20-93 (176)
13 3urf_Z Tumor necrosis factor r 88.0 0.2 6.8E-06 50.4 2.2 35 804-839 101-144 (171)
14 2e4u_A Metabotropic glutamate 86.9 0.13 4.5E-06 58.7 0.2 39 802-844 485-532 (555)
15 3qd6_R CD40L receptor, tumor n 86.5 0.51 1.7E-05 47.3 4.3 62 803-869 18-90 (177)
16 2hey_R Tumor necrosis factor r 86.5 0.26 9E-06 47.8 2.1 32 805-839 84-122 (146)
17 3k51_B Decoy receptor 3; DCR3, 86.4 0.31 1.1E-05 49.1 2.7 35 804-839 103-146 (176)
18 3me4_A Tumor necrosis factor r 85.4 0.34 1.2E-05 50.4 2.4 35 804-839 130-173 (216)
19 3alq_R Tumor necrosis factor r 84.8 0.36 1.2E-05 48.1 2.2 35 804-839 109-152 (173)
20 1sg1_X Tumor necrosis factor r 83.1 0.48 1.6E-05 46.4 2.2 35 804-839 98-141 (161)
21 1ext_A Tumor necrosis factor r 82.5 0.45 1.5E-05 47.0 1.8 37 804-840 3-48 (162)
22 3u3p_A Tumor necrosis factor r 81.9 0.54 1.8E-05 51.7 2.2 35 804-839 107-150 (313)
23 3urf_Z Tumor necrosis factor r 81.6 0.55 1.9E-05 47.2 2.0 61 803-869 20-91 (171)
24 1jma_B Herpesvirus entry media 81.3 0.32 1.1E-05 48.3 0.2 7 805-811 82-88 (167)
25 1sg1_X Tumor necrosis factor r 79.9 0.69 2.4E-05 45.3 2.1 62 802-870 15-87 (161)
26 3tje_F Tumor necrosis factor r 79.4 0.75 2.6E-05 45.7 2.1 40 801-840 27-72 (156)
27 3qd6_R CD40L receptor, tumor n 77.2 0.6 2.1E-05 46.8 0.7 35 804-839 103-146 (177)
28 1klo_A Laminin; glycoprotein; 74.0 1.3 4.4E-05 43.7 2.1 41 799-839 16-58 (162)
29 1du3_A Death receptor 5; trail 67.5 1.7 6E-05 41.6 1.4 26 812-840 22-47 (130)
30 4fhq_A Tumor necrosis factor r 66.9 2.1 7.1E-05 41.5 1.8 38 804-841 4-46 (134)
31 1klo_A Laminin; glycoprotein; 66.8 1.7 5.9E-05 42.7 1.2 35 805-839 79-114 (162)
32 4aqt_A Laminin subunit gamma-1 63.9 2.5 8.7E-05 47.3 2.0 33 804-839 337-369 (375)
33 3vbi_A ANTD, galactoside O-ace 63.0 23 0.00079 35.0 8.6 66 90-162 34-100 (205)
34 4aqs_A Laminin subunit beta-1; 58.8 2.6 8.8E-05 48.4 0.9 33 805-839 463-495 (525)
35 2uwi_A CRME protein; receptor, 55.3 3.3 0.00011 40.3 0.8 42 805-846 82-136 (142)
36 2hr7_A Insulin receptor; hormo 53.1 4.4 0.00015 46.7 1.6 31 804-838 272-305 (486)
37 1igr_A Insulin-like growth fac 50.2 9.7 0.00033 43.9 3.8 20 817-838 276-295 (478)
38 2odl_A Adhesin; HMW1, secretio 46.9 23 0.0008 39.8 6.1 48 239-293 228-278 (373)
39 2dtg_E Insulin receptor; IR ec 46.4 10 0.00035 46.2 3.4 25 946-970 389-413 (897)
40 2y38_A Laminin subunit alpha-5 46.3 9.5 0.00032 43.3 2.8 35 805-839 289-327 (403)
41 1mox_A Epidermal growth factor 41.2 13 0.00045 43.0 3.0 34 804-838 269-306 (501)
42 3ftt_A Putative acetyltransfer 38.2 60 0.0021 32.3 7.0 70 88-162 74-157 (199)
43 2a55_A C4B-binding protein; co 36.8 33 0.0011 32.2 4.5 68 797-869 25-98 (133)
44 1ocx_A Maltose O-acetyltransfe 33.6 66 0.0023 31.9 6.3 69 90-163 74-156 (182)
45 3zyj_B Netrin-G1; cell adhesio 32.9 19 0.00065 41.1 2.6 35 805-839 316-359 (426)
46 2p2o_A Maltose transacetylase; 32.9 67 0.0023 31.9 6.3 70 89-163 75-158 (185)
47 4aqt_A Laminin subunit gamma-1 32.0 22 0.00074 39.9 2.8 36 804-839 274-313 (375)
48 3i2t_A Epidermal growth factor 31.7 19 0.00066 42.2 2.4 30 804-838 271-303 (551)
49 3srt_A Maltose O-acetyltransfe 30.6 75 0.0026 31.3 6.2 58 88-148 76-147 (188)
50 3nz2_A Hexapeptide-repeat cont 30.4 69 0.0024 31.8 5.9 70 88-162 76-159 (195)
51 1krr_A Galactoside O-acetyltra 29.9 82 0.0028 32.0 6.5 70 89-163 76-159 (203)
52 2qy0_A Complement C1R subcompo 27.8 39 0.0013 32.4 3.5 70 797-870 25-108 (159)
53 3mc4_A WW/RSP5/WWP domain:bact 26.3 70 0.0024 34.6 5.4 70 88-162 164-243 (287)
54 3hjj_A Maltose O-acetyltransfe 25.9 80 0.0027 31.1 5.4 70 88-162 78-161 (190)
55 1gkn_A Complement receptor typ 25.5 59 0.002 30.0 4.1 69 797-869 27-99 (128)
56 3ixc_A Hexapeptide transferase 25.0 1.4E+02 0.0049 29.2 7.0 13 132-144 71-83 (191)
57 2gy5_A Angiopoietin-1 receptor 24.2 31 0.0011 38.9 2.3 22 804-825 265-287 (423)
58 2odl_A Adhesin; HMW1, secretio 23.7 46 0.0016 37.5 3.5 101 237-348 253-361 (373)
59 3vbi_A ANTD, galactoside O-ace 21.8 2.4E+02 0.0082 27.6 8.0 52 90-147 54-105 (205)
60 3f1x_A Serine acetyltransferas 21.0 1.1E+02 0.0038 33.3 5.8 27 135-163 253-279 (310)
No 1
>1jma_B Herpesvirus entry mediator; V-type IG molecule and TNFR superfamily, viral protein; HET: NAG; 2.65A {Human herpesvirus 1} SCOP: g.24.1.1 g.24.1.1 PDB: 2aw2_B*
Probab=93.26 E-value=0.058 Score=53.62 Aligned_cols=65 Identities=26% Similarity=0.511 Sum_probs=39.8
Q ss_pred EcccCCCCcc---------CccceeCCCCcccCCCCCCCCccccCCCCCCCCcceeEEee-CCccCCCCCccccccccc
Q 002008 802 TGKKCPKGLY---------GTFCKECPIGTYKDMEGSDESLCTPCSLELLPRRANFIYVR-GGVSQPFCPYECISEKYR 870 (983)
Q Consensus 802 ~~~~CP~Gly---------G~fC~eCP~GtYK~~~Gs~~~lC~pC~~~~~P~ra~~~yv~-~G~~~~~Cpy~C~sdk~~ 870 (983)
.=+.||+|+| ...|++||.|||+..... ...|++|+.=. +....|+... .....+.| .|.+++|.
T Consensus 15 ~C~~CppG~~~~~~C~~~~~t~C~~Cp~GtY~~~~n~-~~~C~~C~~C~-~~~g~~~~~~Ct~t~~t~C--~C~~G~y~ 89 (167)
T 1jma_B 15 CCPKCSPGYRVKEACGELTGTVCEPCPPGTYIAHLNG-LSKCLQCQMCD-PAMGLRASRNCSRTENAVC--GCSPGHFC 89 (167)
T ss_dssp CCBCBCTTEEEEECCCSSSCCEEEECCTTEECSSCBC-SSCCEECCCCC-TTTTEEEEECCCSSSCCEE--EECTTEEE
T ss_pred CCCCCCCCCEeccCCCCCCCCcCCcCCCCccccccCc-CccccCCcccc-cCCCeEEeccCCCCCCCcc--cCCCCcee
Confidence 3467888875 356999999999986321 24688886311 1112233221 12345668 89998883
No 2
>2uwi_A CRME protein; receptor, poxvirus TNF receptor, receptor immunomodulator, TNF alpha receptor; 2.0A {Vaccinia virus}
Probab=93.10 E-value=0.062 Score=52.40 Aligned_cols=63 Identities=27% Similarity=0.578 Sum_probs=41.2
Q ss_pred EEcccCCCCcc---------CccceeCCCCcccCCCCCCCCccccCCCCCCCCcceeEEeeCC--ccCCCCCcccccccc
Q 002008 801 VTGKKCPKGLY---------GTFCKECPIGTYKDMEGSDESLCTPCSLELLPRRANFIYVRGG--VSQPFCPYECISEKY 869 (983)
Q Consensus 801 i~~~~CP~Gly---------G~fC~eCP~GtYK~~~Gs~~~lC~pC~~~~~P~ra~~~yv~~G--~~~~~Cpy~C~sdk~ 869 (983)
.-=+.||||+| ...|++||.|||+..... ...|++|..-. + ...+-++.. ...+.| .|.+++|
T Consensus 15 ~cC~~CppG~~~~~~C~~~~~t~C~pC~~gty~~~~n~-~~~C~~C~~C~-~--~~~~~~~~Ct~t~dtvC--~C~~G~y 88 (142)
T 2uwi_A 15 KCCKLCKPGTYSDHRCDKYSDTICGHCPSDTFTSIYNR-SPWCHSCRGPC-G--TNRVEVTPCTPTTNRIC--HCDSNSY 88 (142)
T ss_dssp EEEECBCTTEEEEECCCSSCCCEEEECCTTEECCSSBC-CSSCEECCCCC-C--TTEEEEECCBTTBCCEE--EECTTEE
T ss_pred CCCCCCCCCCeeCccCCCCCCCccCcCCCCCCcccCCC-CCccCCCcCcc-c--CCeeEeecCCCCCCCEe--eCCCCcE
Confidence 34477888887 466999999999997422 24699998632 1 234433333 334457 4888887
No 3
>2hey_R Tumor necrosis factor receptor superfamily member; cytokine, receptor-ligan complex, CO-stimulator, TNFSF; 2.00A {Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB: 2hev_R
Probab=92.80 E-value=0.067 Score=51.96 Aligned_cols=61 Identities=23% Similarity=0.481 Sum_probs=38.6
Q ss_pred cccCCCCcc---------CccceeCCCCcccCCCCCCCCccccCCCCCCCCcceeEEeeCC--ccCCCCCcccccccc
Q 002008 803 GKKCPKGLY---------GTFCKECPIGTYKDMEGSDESLCTPCSLELLPRRANFIYVRGG--VSQPFCPYECISEKY 869 (983)
Q Consensus 803 ~~~CP~Gly---------G~fC~eCP~GtYK~~~Gs~~~lC~pC~~~~~P~ra~~~yv~~G--~~~~~Cpy~C~sdk~ 869 (983)
=+.||+|+| ...|++||.|||....+ ...|++|+.= +.....+.++.. ...+.| .|.+++|
T Consensus 19 C~~C~pG~~~~~~Ct~~~~t~C~~C~~gty~~~~~--~~~C~~C~~C--~~~~g~~~~~~Ct~t~dt~C--~C~~G~y 90 (146)
T 2hey_R 19 CHECRPGNGMVSRCSRSQNTVCRPCGPGFYNDVVS--SKPCKPCTWC--NLRSGSERKQLCTATQDTVC--RCRAGTQ 90 (146)
T ss_dssp EECBCTTEEEEECCCSSCCCEEEECCTTEECCSCB--SSCCEECCCC--CGGGTEEEEECCBTTBCCEE--EECTTEE
T ss_pred CCCCCCCCeecccCCCCCCCCcccCCCCCEECCCC--CCcCcccCCC--CCCCCceEeccCccCCCccc--cCCCCee
Confidence 478899886 35699999999999854 4579998852 222112222222 223446 4877777
No 4
>4fhq_A Tumor necrosis factor receptor superfamily member; cysteine rich domain, TNF receptor, structural genomics, PSI protein structure initiative; 2.25A {Homo sapiens} PDB: 2aw2_B*
Probab=92.74 E-value=0.068 Score=51.85 Aligned_cols=62 Identities=27% Similarity=0.587 Sum_probs=39.9
Q ss_pred cccCCCCcc---------CccceeCCCCcccCCCCCCCCccccCCCCCCCCcceeEEeeCC--ccCCCCCcccccccc
Q 002008 803 GKKCPKGLY---------GTFCKECPIGTYKDMEGSDESLCTPCSLELLPRRANFIYVRGG--VSQPFCPYECISEKY 869 (983)
Q Consensus 803 ~~~CP~Gly---------G~fC~eCP~GtYK~~~Gs~~~lC~pC~~~~~P~ra~~~yv~~G--~~~~~Cpy~C~sdk~ 869 (983)
=+.||+|+| ...|++||.|||+.... ....|++|.. =..+...+.++.. ...+.|. |.+++|
T Consensus 18 C~~CppG~~~~~~C~~~~~t~C~pC~~gtys~~~n-~~~~C~~C~~--C~~~~g~~~~~~CT~t~dtvC~--C~~G~~ 90 (134)
T 4fhq_A 18 CPKCSPGYRVKEACGELTGTVCEPCPPGTYIAHLN-GLSKCLQCQM--CDPAMGLRASRNCSRTENAVCG--CSPGHF 90 (134)
T ss_dssp EECBCTTEEEEECCC--CCCEEEECCTTEECCSCB-CCSSCEECCC--CCGGGTEEEEECCCSSSCCEEE--ECTTEE
T ss_pred CCCCCCCCEecccCCCCCCCcccCCCCCCEecCCC-CCCcCcCCCC--CCccCCeEEeccCCCCCCcccc--CCCCCE
Confidence 467888876 45799999999998741 2367999986 2222234444444 2334464 888777
No 5
>3tje_F Tumor necrosis factor receptor superfamily member; agonistic antibody, FAB fragment, antibody-receptor complex, cysteine-rich domain, FAS, immune; HET: EDO; 1.93A {Homo sapiens} PDB: 3thm_F*
Probab=91.78 E-value=0.14 Score=50.89 Aligned_cols=63 Identities=24% Similarity=0.431 Sum_probs=36.3
Q ss_pred cccCCCCcc----------CccceeCCCC-cccCCCCCCCCccccCCCCCCCCcceeEEeeCC--ccCCCCCcccccccc
Q 002008 803 GKKCPKGLY----------GTFCKECPIG-TYKDMEGSDESLCTPCSLELLPRRANFIYVRGG--VSQPFCPYECISEKY 869 (983)
Q Consensus 803 ~~~CP~Gly----------G~fC~eCP~G-tYK~~~Gs~~~lC~pC~~~~~P~ra~~~yv~~G--~~~~~Cpy~C~sdk~ 869 (983)
=+.||||+| -..|++||.| ||..... ....|.+|.. =.....++.++.. .+.+.| .|.+++|
T Consensus 44 C~~CppG~~v~~~Ct~~~~~t~C~pC~~g~ty~~~~n-~~~~C~~C~~--C~~~~g~~~~~~CT~t~dtvC--~C~~G~f 118 (156)
T 3tje_F 44 HKPCPPGERKARDCTVNGDEPDCVPCQEGKEYTDKAH-FSSKCRRCRL--CDEGHGLEVEINCTRTQNTKC--RCKPNFF 118 (156)
T ss_dssp SSCBCTTEEESSCCCSSSCCCCEEECCTTTEECSSCB-SCSCCEECCC--CCGGGTEEEEECCBTTBCCEE--EECTTEE
T ss_pred CCCCCCCCeECCcCCCCCCCCcceeCCCCCeeeccCC-CCCcCcCCCC--CCCCcceEEeccccCCCCCee--eCCCCCE
Confidence 467777775 2568888888 7887631 1246777774 2222223433333 233457 7888877
Q ss_pred c
Q 002008 870 R 870 (983)
Q Consensus 870 ~ 870 (983)
-
T Consensus 119 c 119 (156)
T 3tje_F 119 C 119 (156)
T ss_dssp C
T ss_pred e
Confidence 3
No 6
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A*
Probab=91.24 E-value=0.061 Score=62.62 Aligned_cols=36 Identities=28% Similarity=0.529 Sum_probs=29.4
Q ss_pred ccCCCCcc--CccceeCCCCcccCCCCCCCCccccCCCCC
Q 002008 804 KKCPKGLY--GTFCKECPIGTYKDMEGSDESLCTPCSLEL 841 (983)
Q Consensus 804 ~~CP~Gly--G~fC~eCP~GtYK~~~Gs~~~lC~pC~~~~ 841 (983)
=.|.+||. +.-|+.||.||||...+ ...|.+||.+.
T Consensus 265 C~C~~G~e~~~~~C~aC~~g~~k~~~~--~~~C~~CP~~S 302 (536)
T 3fl7_A 265 CLCQAGYEKVEDACQACSPGFFKFEAS--ESPCLECPEHT 302 (536)
T ss_dssp CEECTTEEEETTEEEECCTTEECCSCC--SSCCEECCSSE
T ss_pred EeccCccccCCceeeecCCCCCcccCC--CCccccCCCCC
Confidence 35899996 66799999999999753 47799999754
No 7
>1ext_A Tumor necrosis factor receptor; binding protein, cytokine, signalling protein; 1.85A {Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB: 1ft4_A* 1ncf_A 1tnr_R
Probab=90.61 E-value=0.16 Score=50.25 Aligned_cols=63 Identities=29% Similarity=0.600 Sum_probs=38.3
Q ss_pred EcccCCCCcc------C----ccceeCCCCcccCCCCCCCCccccCCCCCCCCcceeEEeeCC--ccCCCCCcccccccc
Q 002008 802 TGKKCPKGLY------G----TFCKECPIGTYKDMEGSDESLCTPCSLELLPRRANFIYVRGG--VSQPFCPYECISEKY 869 (983)
Q Consensus 802 ~~~~CP~Gly------G----~fC~eCP~GtYK~~~Gs~~~lC~pC~~~~~P~ra~~~yv~~G--~~~~~Cpy~C~sdk~ 869 (983)
-=+.||+|+| + ..|++||.|||...... ...|++|..=. + ....+.++.. ...+.| .|.+++|
T Consensus 19 CC~~CppG~~~~~~Ct~~~~~t~C~~C~~gty~~~~n~-~~~C~~C~~C~-~-~~~~~~~~~Ct~t~dt~C--~C~~G~y 93 (162)
T 1ext_A 19 CCTKCHKGTYLYNDCPGPGQDTDCRECESGSFTASENH-LRHCLSCSKCR-K-EMGQVEISSCTVDRDTVC--GCRKNQY 93 (162)
T ss_dssp EEECBCTTEEEEECCSSTTSCCEEEECCTTEECCSSBC-CSSCEECCCCC-G-GGTCEEEECCBTTBCCEE--ECCTTEE
T ss_pred CCCCCCCCcccccccCCCCCCcccccCCCCccccccCC-CCcccccCCCC-C-CCCEEEEecccCCCCCCc--cCCCCce
Confidence 3578888886 2 45999999999998533 35688887411 1 1122222222 234457 6777776
No 8
>3me4_A Tumor necrosis factor receptor superfamily member; RANK, rankl, rankl-RANK complex, tnfsf11, tnfrsf11A, TNF SUP signaling protein; 2.01A {Mus musculus} PDB: 3me2_R 3qbq_B 4giq_R* 3nzy_B
Probab=90.20 E-value=0.19 Score=52.30 Aligned_cols=65 Identities=20% Similarity=0.392 Sum_probs=40.8
Q ss_pred eEEcccCCCCcc---------CccceeCCCCcccCCCCCCCCccccCCCCCCCCcceeEEeeCC--ccCCCCCccccccc
Q 002008 800 TVTGKKCPKGLY---------GTFCKECPIGTYKDMEGSDESLCTPCSLELLPRRANFIYVRGG--VSQPFCPYECISEK 868 (983)
Q Consensus 800 Ti~~~~CP~Gly---------G~fC~eCP~GtYK~~~Gs~~~lC~pC~~~~~P~ra~~~yv~~G--~~~~~Cpy~C~sdk 868 (983)
..-=+.||+|+| ...|++||.|||+..... ...|++|+. =.....++.++.. ...+.| .|.+++
T Consensus 43 ~~CC~~CppG~~~~~~Ct~~~~t~C~pC~~gtY~~~~n~-~~~C~~C~~--C~~~~~~~~~~~Ct~t~dtvC--~C~~G~ 117 (216)
T 3me4_A 43 GRCCSRCEPGKYLSSKCTPTSDSVCLPCGPDEYLDTWNE-EDKCLLHKV--CDAGKALVAVDPGNHTAPRRC--ACTAGY 117 (216)
T ss_dssp TEEEECBCTTEEEEECCBTTBCCEEEECCTTEECCSSBC-CSSCEECCC--CCGGGTEEEESTTCSSSCCEE--EECTTE
T ss_pred CCCcCCCCCCceecccCCCCCCCccccCCCCCeecCCCC-CCcCCCCCC--CCCCcCeEEEecCCCCCCccc--cCCCCe
Confidence 345688999997 456999999999986321 366888885 2222234444433 223345 377777
Q ss_pred c
Q 002008 869 Y 869 (983)
Q Consensus 869 ~ 869 (983)
|
T Consensus 118 y 118 (216)
T 3me4_A 118 H 118 (216)
T ss_dssp E
T ss_pred E
Confidence 6
No 9
>1du3_A Death receptor 5; trail, DR5, complex; 2.20A {Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB: 1d0g_R 2h9g_R 1za3_R 1d4v_A
Probab=89.79 E-value=0.24 Score=47.56 Aligned_cols=64 Identities=20% Similarity=0.467 Sum_probs=41.6
Q ss_pred eEEcccCCCCcc----CccceeCCCC-cccCCCCCCCCccccCCCCCCCCcceeEEeeCC--ccCCCCCccccccccc
Q 002008 800 TVTGKKCPKGLY----GTFCKECPIG-TYKDMEGSDESLCTPCSLELLPRRANFIYVRGG--VSQPFCPYECISEKYR 870 (983)
Q Consensus 800 Ti~~~~CP~Gly----G~fC~eCP~G-tYK~~~Gs~~~lC~pC~~~~~P~ra~~~yv~~G--~~~~~Cpy~C~sdk~~ 870 (983)
.+.-+.||+|+| -..|++||.| +|...... ...|++|.. =+. .+..++.. ...+.|. |.+++|.
T Consensus 22 ~~~C~~CppG~~~~~~~t~C~pC~~g~ty~~~~n~-~~~C~~C~~--C~~--g~~~~~~Ct~t~dtvC~--C~~G~y~ 92 (130)
T 1du3_A 22 SPSEGLCPPGHHISEDGRDCISCKYGQDYSTHWND-LLFCLRCTR--CDS--GEVELSPCTTTRNTVCQ--CEEGTFR 92 (130)
T ss_dssp CCBTTBBCTTEEECSSSSCEEECCTTTEECCSSBC-CSSCEECCC--CCT--TEEEEECCCSSSCCEEE--ECTTCEE
T ss_pred CCccCCCCCCceecCCCCcCccCCCcCEEeCCCCC-CCcCcCCCC--CCc--ceeeeccCCCCCCCEec--CCCCeEE
Confidence 345688999997 4679999999 99886422 345887774 222 23323222 3445687 8888873
No 10
>3alq_R Tumor necrosis factor receptor superfamily member; ligand-receptor complex, cytokine, cytokine-cytokine recepto; 3.00A {Homo sapiens}
Probab=89.44 E-value=0.25 Score=49.26 Aligned_cols=63 Identities=21% Similarity=0.432 Sum_probs=40.1
Q ss_pred EEcccCCCCcc---------CccceeCCCCcccCCCCCCCCccccCCCCCCCCcceeEEeeCC--ccCCCCCcccccccc
Q 002008 801 VTGKKCPKGLY---------GTFCKECPIGTYKDMEGSDESLCTPCSLELLPRRANFIYVRGG--VSQPFCPYECISEKY 869 (983)
Q Consensus 801 i~~~~CP~Gly---------G~fC~eCP~GtYK~~~Gs~~~lC~pC~~~~~P~ra~~~yv~~G--~~~~~Cpy~C~sdk~ 869 (983)
.-=+.||+|+| ...|++||.|||+...+.. ..|++|... =+. ..|+ ++.. ...+.| .|.+++|
T Consensus 20 ~cC~~C~pG~~~~~~C~~~~~t~C~~C~~gty~~~~n~~-~~C~~C~~~-C~~-g~~~-~~~Ct~t~d~~C--~C~~G~y 93 (173)
T 3alq_R 20 MCCSKCSPGQHAKVFCTKTSDTVCDSCEDSTYTQLWNWV-PECLSCGSR-CSS-DQVE-TQACTREQNRIC--TCRPGWY 93 (173)
T ss_dssp EEEECBCTTEEEEECCCSSCCCEEEECCTTEECCSSBCC-SSCEECCCC-CCT-TEEE-EECCCSSSCCEE--EECTTEE
T ss_pred cCCCCCCCCCeecccCCCCCCCcCCcCCCCccccCCCCC-CccCCCCCc-CCC-CCEE-ecCCCCCCCCee--ECCCCeE
Confidence 34578899986 3459999999999875332 479988731 111 2333 2222 334568 5888887
No 11
>3u3p_A Tumor necrosis factor receptor superfamily member; trigger apoptosis, apoptosis; 2.09A {Homo sapiens} PDB: 3u3q_A 3u3s_A 3u3t_A 3u3v_A 3qo4_A
Probab=89.33 E-value=0.21 Score=54.86 Aligned_cols=39 Identities=38% Similarity=0.872 Sum_probs=28.4
Q ss_pred eEEcccCCCCcc---------CccceeCCCCcccCCCCCCCCccccCCC
Q 002008 800 TVTGKKCPKGLY---------GTFCKECPIGTYKDMEGSDESLCTPCSL 839 (983)
Q Consensus 800 Ti~~~~CP~Gly---------G~fC~eCP~GtYK~~~Gs~~~lC~pC~~ 839 (983)
.+-=+.||+|+| ...|++||.|+|+.... ....|.+|..
T Consensus 23 ~~CC~~CpPGtyv~~~Ct~~~dt~C~pCp~GtYt~~~N-~~~~C~~C~~ 70 (313)
T 3u3p_A 23 VLTCDKCPAGTYVSEHCTNTSLRVCSSCPVGTFTRHEN-GIEKCHDCSQ 70 (313)
T ss_dssp EEEEECBCTTEEEEECCBTTBCCEEEECCTTEECCSCB-CCSSCEECCC
T ss_pred CCCCCCCCCCceecCcCCCCCCCccccCCCCceeccCC-CCCcCccccc
Confidence 345577888887 45699999999999731 1357888773
No 12
>3k51_B Decoy receptor 3; DCR3, TL1A, TNF, TNFR, immunity, cytokine, D bond, glycoprotein, membrane, secreted, signal-anchor, transmembrane, apoptosis; 2.45A {Homo sapiens} PDB: 3mi8_D 3mhd_D
Probab=88.96 E-value=0.27 Score=49.57 Aligned_cols=63 Identities=21% Similarity=0.446 Sum_probs=39.1
Q ss_pred EEcccCCCCcc---------CccceeCCCCcccCCCCCCCCccccCCCCCCCCcceeEEeeCC--ccCCCCCcccccccc
Q 002008 801 VTGKKCPKGLY---------GTFCKECPIGTYKDMEGSDESLCTPCSLELLPRRANFIYVRGG--VSQPFCPYECISEKY 869 (983)
Q Consensus 801 i~~~~CP~Gly---------G~fC~eCP~GtYK~~~Gs~~~lC~pC~~~~~P~ra~~~yv~~G--~~~~~Cpy~C~sdk~ 869 (983)
+-=+.||+|+| ...|++||.|+|+...- ....|++|...- . ...+.++.- ...+.| .|.+++|
T Consensus 20 ~cC~~CppG~~~~~~Ct~~~~t~C~pC~~gtY~~~~n-~~~~C~~C~~~C-~--~~~~~~~~Ct~tsdtvC--~C~~G~~ 93 (176)
T 3k51_B 20 LVCAQCPPGTFVQRPCRRDSPTTCGPCPPRHYTQFWN-YLERCRYCNVLC-G--EREEEARACHATHNRAC--RCRTGFF 93 (176)
T ss_dssp EEEECBCTTEEEEECCCSSSCCEEEECCTTEECCSCB-CCSSCEECCCCC-C--SSEEEEECCBTTBCCEE--EECTTEE
T ss_pred CCCCCCCCCceeCccCCCCCCCccccCCCCCeecCCC-CCCcCccccCcC-C--CCCEEeccCcCCCCcee--eccCCee
Confidence 44467777776 45799999999998631 235799997411 1 123333322 334457 6888877
No 13
>3urf_Z Tumor necrosis factor receptor superfamily member; cystein-rich domain, beta-sandwich, cytokine; HET: NAG; 2.70A {Homo sapiens} PDB: 4e4d_R
Probab=87.99 E-value=0.2 Score=50.42 Aligned_cols=35 Identities=31% Similarity=0.758 Sum_probs=27.5
Q ss_pred ccCCCCcc---------CccceeCCCCcccCCCCCCCCccccCCC
Q 002008 804 KKCPKGLY---------GTFCKECPIGTYKDMEGSDESLCTPCSL 839 (983)
Q Consensus 804 ~~CP~Gly---------G~fC~eCP~GtYK~~~Gs~~~lC~pC~~ 839 (983)
+.||+|++ ...|++||.|||++.. ++...|+||+.
T Consensus 101 t~C~~G~~v~~~~t~~~dt~C~~C~~Gtfs~~~-ss~~~C~p~T~ 144 (171)
T 3urf_Z 101 RSCPPGFGVVQAGTPERNTVCKRCPDGFFSNET-SSKAPCRKHTN 144 (171)
T ss_dssp CCBCTTEEEEECCCSSSCCEEEECCTTEECSSC-BSSCCCEECCC
T ss_pred CcCCCCceEeecCccCCCcccccCCCCcccCCC-CCCCccccCCc
Confidence 67899984 3559999999999974 44678999875
No 14
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=86.90 E-value=0.13 Score=58.70 Aligned_cols=39 Identities=23% Similarity=0.429 Sum_probs=29.6
Q ss_pred EcccCCCCccC---------ccceeCCCCcccCCCCCCCCccccCCCCCCCC
Q 002008 802 TGKKCPKGLYG---------TFCKECPIGTYKDMEGSDESLCTPCSLELLPR 844 (983)
Q Consensus 802 ~~~~CP~GlyG---------~fC~eCP~GtYK~~~Gs~~~lC~pC~~~~~P~ 844 (983)
=...|||||+. .-|++||-|.|. + |...|.+||.+..|+
T Consensus 485 CS~~C~pG~rk~~~~g~~CC~~C~~C~~~~~~--t--d~~~C~~Cp~~~wpn 532 (555)
T 2e4u_A 485 CSDPCAPNEMKNMQPGDVCCWICIPCEPYEYL--V--DEFTCMDCGPGQWPT 532 (555)
T ss_dssp SSCCCCTTTEEEECCSSSSCCEEEECCTTEEE--E--ETTEEEECCTTEEEC
T ss_pred eCCCCCCCeeeeecCCCeeEEECccCCCceec--C--CCccceeCCcccCcC
Confidence 34789999952 229999999997 3 778999999755443
No 15
>3qd6_R CD40L receptor, tumor necrosis factor receptor superfamily member; immune regulator, cytokine-cytokine receptor compl; HET: NAG; 3.50A {Homo sapiens}
Probab=86.52 E-value=0.51 Score=47.32 Aligned_cols=62 Identities=18% Similarity=0.302 Sum_probs=37.0
Q ss_pred cccCCCCcc---------CccceeCCCCcccCCCCCCCCccccCCCCCCCCcceeEEeeCC--ccCCCCCcccccccc
Q 002008 803 GKKCPKGLY---------GTFCKECPIGTYKDMEGSDESLCTPCSLELLPRRANFIYVRGG--VSQPFCPYECISEKY 869 (983)
Q Consensus 803 ~~~CP~Gly---------G~fC~eCP~GtYK~~~Gs~~~lC~pC~~~~~P~ra~~~yv~~G--~~~~~Cpy~C~sdk~ 869 (983)
=+.||+|+| ...|++||.|+|+..... ...|++|.. =+....++.++.. ...+.|. |.+++|
T Consensus 18 C~~CppG~~~~~~C~~~~~t~C~pC~~gty~~~~n~-~~~C~~C~~--C~~~~g~~~~~~Ct~t~d~~C~--C~~G~~ 90 (177)
T 3qd6_R 18 CSLCQPGQKLVSDCTEFTETECLPCGESEFLDTWNR-ETHCHQHKY--CDPNLGLRVQQKGTSETDTICT--CEEGWH 90 (177)
T ss_dssp ECCBCTTBCCCBCCCSSCCCBCCBCCSSEECCSSBC-CSSCEECCC--CCGGGTEEEEECCCTTSCCEEE--ECTTEE
T ss_pred CCCCCCCCEeccCCCCCCCCccccCCCCceecCCCC-CCcCCCCCc--CCCcCCeEEecCCcCCCCceee--cCCCcE
Confidence 477888886 356999999999986311 246888874 2222123333322 2334465 777776
No 16
>2hey_R Tumor necrosis factor receptor superfamily member; cytokine, receptor-ligan complex, CO-stimulator, TNFSF; 2.00A {Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB: 2hev_R
Probab=86.51 E-value=0.26 Score=47.77 Aligned_cols=32 Identities=28% Similarity=0.753 Sum_probs=25.2
Q ss_pred cCCCCcc-------CccceeCCCCcccCCCCCCCCccccCCC
Q 002008 805 KCPKGLY-------GTFCKECPIGTYKDMEGSDESLCTPCSL 839 (983)
Q Consensus 805 ~CP~Gly-------G~fC~eCP~GtYK~~~Gs~~~lC~pC~~ 839 (983)
.|++||| ..-|++||.|||++.. ...|+||++
T Consensus 84 ~C~~G~y~~~g~~~~~~C~~C~~Gtfs~~~---~~~C~~~t~ 122 (146)
T 2hey_R 84 RCRAGTQPLDSYKPGVDCAPCPPGHFSPGD---NQACKPWTN 122 (146)
T ss_dssp EECTTEEESCSSSTTSSEEECCTTEECCST---TCCCEECCC
T ss_pred cCCCCeeeCCCcccCcccccCCCCcccCCC---CCCCcCCCC
Confidence 3788876 2459999999999962 568999985
No 17
>3k51_B Decoy receptor 3; DCR3, TL1A, TNF, TNFR, immunity, cytokine, D bond, glycoprotein, membrane, secreted, signal-anchor, transmembrane, apoptosis; 2.45A {Homo sapiens} PDB: 3mi8_D 3mhd_D
Probab=86.44 E-value=0.31 Score=49.13 Aligned_cols=35 Identities=34% Similarity=0.741 Sum_probs=28.4
Q ss_pred ccCCCCcc---------CccceeCCCCcccCCCCCCCCccccCCC
Q 002008 804 KKCPKGLY---------GTFCKECPIGTYKDMEGSDESLCTPCSL 839 (983)
Q Consensus 804 ~~CP~Gly---------G~fC~eCP~GtYK~~~Gs~~~lC~pC~~ 839 (983)
+.||+|++ ...|++||.|||++.. ++...|+||.+
T Consensus 103 s~C~pG~~v~~~~t~~~Dt~C~~C~~GtFs~~~-s~~~~C~p~t~ 146 (176)
T 3k51_B 103 ASCPPGAGVIAPGTPSQNTQCQPCPPGTFSASS-SSSEQCQPHRN 146 (176)
T ss_dssp CCCCTTEEEEECCCSSSCCEEEECCTTEECCSC-SSSCCCEECCC
T ss_pred ccCCCCcEEeecCcccCCCccccCCCCcccCCC-CCCCcccCCCc
Confidence 68999995 3569999999999975 34578999986
No 18
>3me4_A Tumor necrosis factor receptor superfamily member; RANK, rankl, rankl-RANK complex, tnfsf11, tnfrsf11A, TNF SUP signaling protein; 2.01A {Mus musculus} PDB: 3me2_R 3qbq_B 4giq_R* 3nzy_B
Probab=85.42 E-value=0.34 Score=50.41 Aligned_cols=35 Identities=29% Similarity=0.691 Sum_probs=27.5
Q ss_pred ccCCCCcc---------CccceeCCCCcccCCCCCCCCccccCCC
Q 002008 804 KKCPKGLY---------GTFCKECPIGTYKDMEGSDESLCTPCSL 839 (983)
Q Consensus 804 ~~CP~Gly---------G~fC~eCP~GtYK~~~Gs~~~lC~pC~~ 839 (983)
+.||+|++ ...|++||.|||++.. ++...|+||+.
T Consensus 130 s~C~pG~~v~~~ct~~~Dt~C~~C~~GtFs~~~-s~~~~C~p~T~ 173 (216)
T 3me4_A 130 TECAPGFGAQHPLQLNKDTVCTPCLLGFFSDVF-SSTDKCKPWTN 173 (216)
T ss_dssp CCBCTTEEECSSEETTSCCCEEECCTTEECCSC-BSSCCCEECCC
T ss_pred ccCCCCccccccCccCCCCccccCCCceecCCC-CCCCccccCCc
Confidence 58899984 4569999999999974 34568999985
No 19
>3alq_R Tumor necrosis factor receptor superfamily member; ligand-receptor complex, cytokine, cytokine-cytokine recepto; 3.00A {Homo sapiens}
Probab=84.82 E-value=0.36 Score=48.06 Aligned_cols=35 Identities=31% Similarity=0.823 Sum_probs=24.2
Q ss_pred ccCCCCcc---------CccceeCCCCcccCCCCCCCCccccCCC
Q 002008 804 KKCPKGLY---------GTFCKECPIGTYKDMEGSDESLCTPCSL 839 (983)
Q Consensus 804 ~~CP~Gly---------G~fC~eCP~GtYK~~~Gs~~~lC~pC~~ 839 (983)
+.||+|++ ..-|++||.|||++.. ++...|+||++
T Consensus 109 ~~C~~G~~v~~~~t~~~dt~C~~C~~Gtfs~~~-s~~~~C~p~t~ 152 (173)
T 3alq_R 109 RKCRPGFGVARPGTETSDVVCKPCAPGTFSNTT-SSTDICRPHQI 152 (173)
T ss_dssp CCBCTTEEEEECCTTTSCCEEEECCTTEECCCC-BSSCCCEECCC
T ss_pred CcCCCCeeEecCCcCCCCCcccCCCCCeecCCC-CCCccCCCCCC
Confidence 57888875 2348888888888764 33556777774
No 20
>1sg1_X Tumor necrosis factor receptor superfamily member 16; nerve growth factor, NGF, neurotrophin, common neurotrophin receptor; 2.40A {Rattus norvegicus} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 g.24.1.1 PDB: 3buk_C* 3ij2_X
Probab=83.10 E-value=0.48 Score=46.44 Aligned_cols=35 Identities=40% Similarity=0.888 Sum_probs=22.7
Q ss_pred ccCCCCcc---------CccceeCCCCcccCCCCCCCCccccCCC
Q 002008 804 KKCPKGLY---------GTFCKECPIGTYKDMEGSDESLCTPCSL 839 (983)
Q Consensus 804 ~~CP~Gly---------G~fC~eCP~GtYK~~~Gs~~~lC~pC~~ 839 (983)
+.||+|++ ...|++||.|||++... ....|++|+.
T Consensus 98 ~~C~~G~~v~~~ct~~~dt~C~~C~~Gtfs~~~~-~~~~C~~ct~ 141 (161)
T 1sg1_X 98 SVCEVGSGLVFSCQDKQNTVCEECPEGTYSDEAN-HVDPCLPCTV 141 (161)
T ss_dssp CCBCTTEEEEECCBTTBCCEEEECCTTEECCSCB-SSCCCEECCC
T ss_pred ccCCCCCeecccCCCCCCCcccCCCCCceeCCCC-CCCcCCcCCC
Confidence 56777774 34588888888887642 1356777764
No 21
>1ext_A Tumor necrosis factor receptor; binding protein, cytokine, signalling protein; 1.85A {Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB: 1ft4_A* 1ncf_A 1tnr_R
Probab=82.51 E-value=0.45 Score=47.00 Aligned_cols=37 Identities=30% Similarity=0.783 Sum_probs=28.0
Q ss_pred ccCCCCcc-----Ccc-ceeCCCCcccCCCC---CCCCccccCCCC
Q 002008 804 KKCPKGLY-----GTF-CKECPIGTYKDMEG---SDESLCTPCSLE 840 (983)
Q Consensus 804 ~~CP~Gly-----G~f-C~eCP~GtYK~~~G---s~~~lC~pC~~~ 840 (983)
..||.|+| +.+ |+.||+|||..... .....|.|||..
T Consensus 3 ~~C~~g~Y~~~~~~~~CC~~CppG~~~~~~Ct~~~~~t~C~~C~~g 48 (162)
T 1ext_A 3 SVCPQGKYIHPQNNSICCTKCHKGTYLYNDCPGPGQDTDCRECESG 48 (162)
T ss_dssp CCCCTTEEECSSCTTCEEECBCTTEEEEECCSSTTSCCEEEECCTT
T ss_pred ccCCCCceeccCCCCCCCCCCCCCcccccccCCCCCCcccccCCCC
Confidence 57999986 334 99999999987652 134679999974
No 22
>3u3p_A Tumor necrosis factor receptor superfamily member; trigger apoptosis, apoptosis; 2.09A {Homo sapiens} PDB: 3u3q_A 3u3s_A 3u3t_A 3u3v_A 3qo4_A
Probab=81.86 E-value=0.54 Score=51.71 Aligned_cols=35 Identities=31% Similarity=0.636 Sum_probs=27.2
Q ss_pred ccCCCCcc---------CccceeCCCCcccCCCCCCCCccccCCC
Q 002008 804 KKCPKGLY---------GTFCKECPIGTYKDMEGSDESLCTPCSL 839 (983)
Q Consensus 804 ~~CP~Gly---------G~fC~eCP~GtYK~~~Gs~~~lC~pC~~ 839 (983)
+.||+|++ ...|+.||.|||++.. +....|++|+.
T Consensus 107 t~CppG~gV~~~cT~tsDTvC~~Cp~GTFSd~~-Ss~~~C~pcT~ 150 (313)
T 3u3p_A 107 TVCPVGWGVRKKGTETEDVRCKQCARGTFSDVP-SSVMKCKAYTD 150 (313)
T ss_dssp CCBCTTEEEEECCCSSSCCEEEECCTTEECCSC-BSSCCCEECCC
T ss_pred ccCCCCCeeeecCCCCCCCccccCCCCeecCCC-CCCcccccCCc
Confidence 68888884 3579999999999964 23567999875
No 23
>3urf_Z Tumor necrosis factor receptor superfamily member; cystein-rich domain, beta-sandwich, cytokine; HET: NAG; 2.70A {Homo sapiens} PDB: 4e4d_R
Probab=81.60 E-value=0.55 Score=47.20 Aligned_cols=61 Identities=28% Similarity=0.604 Sum_probs=36.8
Q ss_pred cccCCCCcc---------CccceeCCCCcccCCCCCCCCccccCCCCCCCCcceeEEeeCC--ccCCCCCcccccccc
Q 002008 803 GKKCPKGLY---------GTFCKECPIGTYKDMEGSDESLCTPCSLELLPRRANFIYVRGG--VSQPFCPYECISEKY 869 (983)
Q Consensus 803 ~~~CP~Gly---------G~fC~eCP~GtYK~~~Gs~~~lC~pC~~~~~P~ra~~~yv~~G--~~~~~Cpy~C~sdk~ 869 (983)
=+.||+|+| ...|++||.|+|+.... ....|++|... -.. ..++ ++.. ...+.|. |.+++|
T Consensus 20 C~~CppG~~~~~~Ct~~~~t~C~~C~~gty~~~~n-~~~~C~~C~~~-C~~-~~~~-~~~CT~tsdtvC~--C~~G~~ 91 (171)
T 3urf_Z 20 CDKCPPGTYLKQHCTAKWKTVCAPCPDHYYTDSWH-TSDECLYCSPV-CKE-LQYV-KQECNRTHNRVCE--CKEGRY 91 (171)
T ss_dssp EECBCTTEEEEECCCSSSCCEEEECCTTEECCSCB-CCSSCEECCCC-CCT-TEEE-EECCCSSSCCEEE--ECTTEE
T ss_pred CCCCCCCceecccCCCCCCCccccCCCCcEecCCC-CCCccccCcCc-cCC-CCEE-eccCcCCCCcccc--CCCCcE
Confidence 356777775 45799999999998731 14679999831 111 1233 2222 2334464 888777
No 24
>1jma_B Herpesvirus entry mediator; V-type IG molecule and TNFR superfamily, viral protein; HET: NAG; 2.65A {Human herpesvirus 1} SCOP: g.24.1.1 g.24.1.1 PDB: 2aw2_B*
Probab=81.27 E-value=0.32 Score=48.28 Aligned_cols=7 Identities=29% Similarity=0.952 Sum_probs=3.7
Q ss_pred cCCCCcc
Q 002008 805 KCPKGLY 811 (983)
Q Consensus 805 ~CP~Gly 811 (983)
.|++|||
T Consensus 82 ~C~~G~y 88 (167)
T 1jma_B 82 GCSPGHF 88 (167)
T ss_dssp EECTTEE
T ss_pred cCCCCce
Confidence 4555554
No 25
>1sg1_X Tumor necrosis factor receptor superfamily member 16; nerve growth factor, NGF, neurotrophin, common neurotrophin receptor; 2.40A {Rattus norvegicus} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 g.24.1.1 PDB: 3buk_C* 3ij2_X
Probab=79.92 E-value=0.69 Score=45.30 Aligned_cols=62 Identities=23% Similarity=0.457 Sum_probs=37.7
Q ss_pred EcccCCCCcc--------CccceeCCCC-cccCCCCCCCCccccCCCCCCCCcceeEEeeCC--ccCCCCCccccccccc
Q 002008 802 TGKKCPKGLY--------GTFCKECPIG-TYKDMEGSDESLCTPCSLELLPRRANFIYVRGG--VSQPFCPYECISEKYR 870 (983)
Q Consensus 802 ~~~~CP~Gly--------G~fC~eCP~G-tYK~~~Gs~~~lC~pC~~~~~P~ra~~~yv~~G--~~~~~Cpy~C~sdk~~ 870 (983)
-=+.||+|+| ...|++||.| ||+...+. ...|++|+.= + ...++- +.. ...+.| .|.+++|.
T Consensus 15 ~C~~CppG~~~~~~C~~~~t~C~~C~~g~ty~~~~~~-~~~C~~C~~C--~-~~~~~~-~~Ct~t~d~~C--~C~~G~y~ 87 (161)
T 1sg1_X 15 CCKACNLGEGVAQPCGANQTVCEPCLDNVTFSDVVSA-TEPCKPCTEC--L-GLQSMS-APCVEADDAVC--RCAYGYYQ 87 (161)
T ss_dssp BCCCBCTTEEEEECSSSSSCEEEECCTTTEECCSCBS-SCCCEECCCC--C-TTEEEE-ECCBTTBCCEE--EECTTEEE
T ss_pred CCCCCCcCCeECCcCCCCCCcCcCCcCCCccccCCCC-CCcCcCCCCC--C-Ccceee-cCCCcccCcee--ccCCCeEe
Confidence 4477888876 3569999998 99887432 3468888742 1 123332 222 233457 48888774
No 26
>3tje_F Tumor necrosis factor receptor superfamily member; agonistic antibody, FAB fragment, antibody-receptor complex, cysteine-rich domain, FAS, immune; HET: EDO; 1.93A {Homo sapiens} PDB: 3thm_F*
Probab=79.41 E-value=0.75 Score=45.72 Aligned_cols=40 Identities=35% Similarity=0.649 Sum_probs=20.8
Q ss_pred EEcccCCCCcc--Ccc-ceeCCCCcccCCCCC---CCCccccCCCC
Q 002008 801 VTGKKCPKGLY--GTF-CKECPIGTYKDMEGS---DESLCTPCSLE 840 (983)
Q Consensus 801 i~~~~CP~Gly--G~f-C~eCP~GtYK~~~Gs---~~~lC~pC~~~ 840 (983)
--...||+++| +.+ |..||+|||....-. +...|.||++.
T Consensus 27 ~~~~~C~~~~Y~~~~~CC~~CppG~~v~~~Ct~~~~~t~C~pC~~g 72 (156)
T 3tje_F 27 TVETQNLEGLHHDGQFCHKPCPPGERKARDCTVNGDEPDCVPCQEG 72 (156)
T ss_dssp ------------CCTTCSSCBCTTEEESSCCCSSSCCCCEEECCTT
T ss_pred ecccCCCCCcEECcCeECCCCCCCCeECCcCCCCCCCCcceeCCCC
Confidence 34468999998 444 899999999764322 13589999975
No 27
>3qd6_R CD40L receptor, tumor necrosis factor receptor superfamily member; immune regulator, cytokine-cytokine receptor compl; HET: NAG; 3.50A {Homo sapiens}
Probab=77.22 E-value=0.6 Score=46.79 Aligned_cols=35 Identities=29% Similarity=0.796 Sum_probs=5.9
Q ss_pred ccCCCCcc---------CccceeCCCCcccCCCCCCCCccccCCC
Q 002008 804 KKCPKGLY---------GTFCKECPIGTYKDMEGSDESLCTPCSL 839 (983)
Q Consensus 804 ~~CP~Gly---------G~fC~eCP~GtYK~~~Gs~~~lC~pC~~ 839 (983)
..||+|++ ...|++||.|||.+.. +....|+||+.
T Consensus 103 ~~C~pG~~v~~~~t~~~dt~C~~C~~Gtfs~~~-s~~~~C~p~t~ 146 (177)
T 3qd6_R 103 RSCSPGFGVKQIATGVSDTICEPCPVGFFSNVS-SAFEKCHPWTS 146 (177)
T ss_dssp CCC------CCCCCSSCCCCCCC----------------------
T ss_pred CcCCCCcEEEeCCccCCCCccccCCCCcccCCC-CCCCcCcCccc
Confidence 46777763 3568888888888764 22456777764
No 28
>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A
Probab=74.03 E-value=1.3 Score=43.65 Aligned_cols=41 Identities=37% Similarity=0.739 Sum_probs=30.6
Q ss_pred ceEEcccCCCCccCccceeCCCCcccCCCCC--CCCccccCCC
Q 002008 799 GTVTGKKCPKGLYGTFCKECPIGTYKDMEGS--DESLCTPCSL 839 (983)
Q Consensus 799 GTi~~~~CP~GlyG~fC~eCP~GtYK~~~Gs--~~~lC~pC~~ 839 (983)
|+..=..||++|.|.+|++|+.|||.+.... ....|++|+=
T Consensus 16 g~~~C~~C~~g~~G~~Ce~C~~g~~g~~~~~~~~~~~C~~C~C 58 (162)
T 1klo_A 16 KEVVCTHCPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQC 58 (162)
T ss_dssp CCEEECSCCTTEESTTSCEECTTEEEETTCTTSSCEEEEECCS
T ss_pred CCEEeCCCCCCCcCCCCcCCCCCCcCCcccccCCCCCCeeCcC
Confidence 3444457999999999999999999976421 1246898874
No 29
>1du3_A Death receptor 5; trail, DR5, complex; 2.20A {Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB: 1d0g_R 2h9g_R 1za3_R 1d4v_A
Probab=67.49 E-value=1.7 Score=41.58 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=21.8
Q ss_pred CccceeCCCCcccCCCCCCCCccccCCCC
Q 002008 812 GTFCKECPIGTYKDMEGSDESLCTPCSLE 840 (983)
Q Consensus 812 G~fC~eCP~GtYK~~~Gs~~~lC~pC~~~ 840 (983)
+.-|+.||+|+|... +...|.||+..
T Consensus 22 ~~~C~~CppG~~~~~---~~t~C~pC~~g 47 (130)
T 1du3_A 22 SPSEGLCPPGHHISE---DGRDCISCKYG 47 (130)
T ss_dssp CCBTTBBCTTEEECS---SSSCEEECCTT
T ss_pred CCccCCCCCCceecC---CCCcCccCCCc
Confidence 556999999999986 35789999974
No 30
>4fhq_A Tumor necrosis factor receptor superfamily member; cysteine rich domain, TNF receptor, structural genomics, PSI protein structure initiative; 2.25A {Homo sapiens} PDB: 2aw2_B*
Probab=66.86 E-value=2.1 Score=41.46 Aligned_cols=38 Identities=24% Similarity=0.609 Sum_probs=27.2
Q ss_pred ccCCCCcc--Ccc-ceeCCCCcccCCCCC--CCCccccCCCCC
Q 002008 804 KKCPKGLY--GTF-CKECPIGTYKDMEGS--DESLCTPCSLEL 841 (983)
Q Consensus 804 ~~CP~Gly--G~f-C~eCP~GtYK~~~Gs--~~~lC~pC~~~~ 841 (983)
..|+++.| +.+ |.+||+|+|....=. ....|.||+..+
T Consensus 4 ~~C~~~eY~~~~~CC~~CppG~~~~~~C~~~~~t~C~pC~~gt 46 (134)
T 4fhq_A 4 PSCKEDEYPVGSECCPKCSPGYRVKEACGELTGTVCEPCPPGT 46 (134)
T ss_dssp CCCCTTEEEETTEEEECBCTTEEEEECCC--CCCEEEECCTTE
T ss_pred CCCCcccEECcCcCCCCCCCCCEecccCCCCCCCcccCCCCCC
Confidence 57999887 444 999999999543211 135799999743
No 31
>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A
Probab=66.81 E-value=1.7 Score=42.70 Aligned_cols=35 Identities=23% Similarity=0.615 Sum_probs=27.6
Q ss_pred cCCCCccCccceeCCCCcccCCCC-CCCCccccCCC
Q 002008 805 KCPKGLYGTFCKECPIGTYKDMEG-SDESLCTPCSL 839 (983)
Q Consensus 805 ~CP~GlyG~fC~eCP~GtYK~~~G-s~~~lC~pC~~ 839 (983)
.|++++.|.+|++|+.|||-+..- .+...|++|+=
T Consensus 79 ~C~~g~~G~~Ce~C~~Gy~g~~~~~~~~~~C~~C~C 114 (162)
T 1klo_A 79 KCIYNTAGFYCDRCKEGFFGNPLAPNPADKCKACAC 114 (162)
T ss_dssp CBCTTEETTTTCEECTTEEECTTCSSGGGSEEECCC
T ss_pred CCCCCCcCCCcCcCchhhcCCccccCCCCCCeeccC
Confidence 599999999999999999987641 12246998874
No 32
>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus musculus}
Probab=63.89 E-value=2.5 Score=47.33 Aligned_cols=33 Identities=18% Similarity=0.544 Sum_probs=27.1
Q ss_pred ccCCCCccCccceeCCCCcccCCCCCCCCccccCCC
Q 002008 804 KKCPKGLYGTFCKECPIGTYKDMEGSDESLCTPCSL 839 (983)
Q Consensus 804 ~~CP~GlyG~fC~eCP~GtYK~~~Gs~~~lC~pC~~ 839 (983)
..|.+++.|..|++|..|||.+. ....|+||..
T Consensus 337 ~~C~~n~~G~~Ce~C~~Gyyg~~---~~~~C~pCaA 369 (375)
T 4aqt_A 337 TNCRDNTDGAKCERCRENFFRLG---NTEACSPAAA 369 (375)
T ss_dssp CSCTTTEESTTSCEECSSEECCT---TCSSCEEC--
T ss_pred CCCCCCCcCCCCCCCCcCcccCc---CCCCCcCCcC
Confidence 45999999999999999999985 3457999985
No 33
>3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A*
Probab=62.98 E-value=23 Score=35.00 Aligned_cols=66 Identities=23% Similarity=0.393 Sum_probs=45.8
Q ss_pred EEeceeEeccceEEeecccEEEcCCeeeeecCCCceEEEEeeeeEEEccCcEEEeeeEEEEE-eeEEEccCceE
Q 002008 90 LLNSNLYLNYDLYIYGTGNLEILPKISIVCPVEGCKITFNMSGNINMGQYAAIVAGSVVVSA-ANLTMDLNSSI 162 (983)
Q Consensus 90 ~l~~~~~i~~~~~i~g~G~l~i~~~v~~~c~~~gc~i~v~~sG~~~l~~~s~i~ag~v~l~a-~ni~i~~~S~I 162 (983)
.+-..+.|...++|.+.++++|-+++.| .++|.| .++++|++++.|-.+...... .+++|.++..|
T Consensus 34 ~ig~~~~I~~~~~i~~~~~v~IG~~~~I---~~~~~I----~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I 100 (205)
T 3vbi_A 34 SVGKNVLISKKASIYNPGVISIGNNVRI---DDFCIL----SGKVTIGSYSHIAAYTALYGGEVGIEMYDFANI 100 (205)
T ss_dssp EECSSEEEBTTSEEESGGGEEECSSEEE---CTTCEE----EEEEEECSSEEECTTCEEEEEEEEEEECTTCEE
T ss_pred EECCCCEECCCeEEccCCeeEECCCCEE---CCCCEE----ccceEECCCCEECCCeEEEcCCccEEECCCCEE
Confidence 4666777888888888889999999977 667776 478888888777665443332 23555555444
No 34
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus}
Probab=58.80 E-value=2.6 Score=48.42 Aligned_cols=33 Identities=24% Similarity=0.559 Sum_probs=12.4
Q ss_pred cCCCCccCccceeCCCCcccCCCCCCCCccccCCC
Q 002008 805 KCPKGLYGTFCKECPIGTYKDMEGSDESLCTPCSL 839 (983)
Q Consensus 805 ~CP~GlyG~fC~eCP~GtYK~~~Gs~~~lC~pC~~ 839 (983)
.|++||.|..|++|+.|||.... +...|.+|+=
T Consensus 463 ~C~~g~~G~~Ce~C~~G~~g~~~--~~~~C~~C~C 495 (525)
T 4aqs_A 463 YCKRLVTGQRCDQCLPQHWGLSN--DLDGCRPCDC 495 (525)
T ss_dssp CBCTTCCSTTTCC----------------------
T ss_pred ECCCCCcCCCcccCCCCccCCCC--CCCCCcCCCC
Confidence 59999999999999999998753 4456998874
No 35
>2uwi_A CRME protein; receptor, poxvirus TNF receptor, receptor immunomodulator, TNF alpha receptor; 2.0A {Vaccinia virus}
Probab=55.25 E-value=3.3 Score=40.26 Aligned_cols=42 Identities=21% Similarity=0.516 Sum_probs=21.7
Q ss_pred cCCCCcc------C---ccc---eeCCCCcccCCC-CCCCCccccCCCCCCCCcc
Q 002008 805 KCPKGLY------G---TFC---KECPIGTYKDME-GSDESLCTPCSLELLPRRA 846 (983)
Q Consensus 805 ~CP~Gly------G---~fC---~eCP~GtYK~~~-Gs~~~lC~pC~~~~~P~ra 846 (983)
.|++||| . .+| ..||+|++.... -..-..|.+||...+....
T Consensus 82 ~C~~G~yc~~~~~~~~C~~C~~~t~C~pG~~v~~~t~~~dt~C~~C~~GtfS~~~ 136 (142)
T 2uwi_A 82 HCDSNSYCLLKASDGNCVTCAPKTKCGRGYGKKGEDEMGNTICKKCRKGTYSKTG 136 (142)
T ss_dssp EECTTEEEEEECTTSCEEEEEECCCCCTTEEEEEECTTSCEEEEECC--------
T ss_pred eCCCCcEecccCCCCCCCCCcCCCcCCcCEeeCCCCCCCCCcccCCCCCcccCCc
Confidence 4888888 1 256 578999984221 1122469999986655433
No 36
>2hr7_A Insulin receptor; hormone receptor, leucine rich repeat, transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo sapiens}
Probab=53.06 E-value=4.4 Score=46.73 Aligned_cols=31 Identities=35% Similarity=0.774 Sum_probs=21.6
Q ss_pred ccCCCCc--cCccce-eCCCCcccCCCCCCCCccccCC
Q 002008 804 KKCPKGL--YGTFCK-ECPIGTYKDMEGSDESLCTPCS 838 (983)
Q Consensus 804 ~~CP~Gl--yG~fC~-eCP~GtYK~~~Gs~~~lC~pC~ 838 (983)
..|. .| ++..|+ +||.|+|.+. +...|+||.
T Consensus 272 ~sC~-~~~~~~~~CV~~CP~g~~~~~---~~~~C~~C~ 305 (486)
T 2hr7_A 272 QGCH-QYVIHNNKCIPECPSGYTMNS---SNLLCTPCL 305 (486)
T ss_dssp SSCC-CCEEETTEEESSCCTTEEECT---TSCBEEECS
T ss_pred cccc-cEeeECCEecccCCCCcccCC---CCCccccCC
Confidence 4564 45 366676 7999999875 345799997
No 37
>1igr_A Insulin-like growth factor receptor 1; hormone receptor, insulin receptor family; HET: NAG FUC BMA MAN; 2.60A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
Probab=50.21 E-value=9.7 Score=43.94 Aligned_cols=20 Identities=35% Similarity=0.934 Sum_probs=11.6
Q ss_pred eCCCCcccCCCCCCCCccccCC
Q 002008 817 ECPIGTYKDMEGSDESLCTPCS 838 (983)
Q Consensus 817 eCP~GtYK~~~Gs~~~lC~pC~ 838 (983)
+||.|++.+.. +...|+||.
T Consensus 276 ~CP~g~~~~~~--~~~~C~~C~ 295 (478)
T 1igr_A 276 ECPSGFIRNGS--QSMYCIPCE 295 (478)
T ss_dssp SCCTTEEESST--TCSCEEECS
T ss_pred cCCCCCcccCC--CcceeccCC
Confidence 37777665542 334577775
No 38
>2odl_A Adhesin; HMW1, secretion domain, beta helix, cell adhesion; 1.92A {Haemophilus influenzae}
Probab=46.95 E-value=23 Score=39.79 Aligned_cols=48 Identities=27% Similarity=0.402 Sum_probs=29.6
Q ss_pred ccEEEEEEcee-eeeccEEEEecCCCCCCCcccCCccEEEEEee--eecceEEEeecC
Q 002008 239 GGRIKLLVKDM-LYLNGSVTAEGGDGGLKGGGGSGGSIYVLAVK--LKGYGFISAAGG 293 (983)
Q Consensus 239 GG~I~i~a~~~-l~~~G~i~AnG~~g~~~gGGGSGGsI~l~a~~--l~g~G~isA~GG 293 (983)
+|.|.|.|.+- +.+.|.|.|.. ..+.||.|.|.+.+ |....+|.|.|-
T Consensus 228 ~G~I~l~a~~g~v~~~G~l~as~-------~~g~GG~V~i~g~~v~l~~gA~I~asG~ 278 (373)
T 2odl_A 228 SGNIVLSAKEGEAEIGGVISAQN-------QQAKGGKLMITGDKVTLKTGAVIDLSGK 278 (373)
T ss_dssp CCEEEEEEEEEEEEECSEEECCE-------EEEECCEEEEEEEEEEECTTCEEECCEE
T ss_pred CCcEEEecCCCeEEeceEEccCC-------CCCCCCEEEEEcceEEecCCCEEEeecc
Confidence 55666666432 33456665432 36789999999874 333467877663
No 39
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E
Probab=46.37 E-value=10 Score=46.18 Aligned_cols=25 Identities=20% Similarity=0.432 Sum_probs=16.2
Q ss_pred cchhcccceEEEEEecCCCCCCCcc
Q 002008 946 RAEETQSHVHRMYFMGPNTFREPWH 970 (983)
Q Consensus 946 ~~eDl~~HvhRmYf~G~NTf~~PW~ 970 (983)
|-+++.++.+=+|++-+....+=|-
T Consensus 389 ~g~~~~~~~~~l~~~~n~~l~~l~~ 413 (897)
T 2dtg_E 389 RGETLEIGNYSFYALDNQNLRQLWD 413 (897)
T ss_dssp CCTTCBTTTEEEEEESCTTCCBSCC
T ss_pred cCeeccCCCEEEEEEeccChhhhCc
Confidence 5566666666777777666665554
No 40
>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion, basement membrane; HET: NAG; 2.90A {Mus musculus}
Probab=46.26 E-value=9.5 Score=43.26 Aligned_cols=35 Identities=20% Similarity=0.482 Sum_probs=28.1
Q ss_pred cCCCCccCccceeCCCCcccCCC----CCCCCccccCCC
Q 002008 805 KCPKGLYGTFCKECPIGTYKDME----GSDESLCTPCSL 839 (983)
Q Consensus 805 ~CP~GlyG~fC~eCP~GtYK~~~----Gs~~~lC~pC~~ 839 (983)
.|+..+.|..|+.|..|||.+.. ......|++|+=
T Consensus 289 ~C~hnT~G~~CErC~pGy~g~p~~~at~~~~~~C~pC~C 327 (403)
T 2y38_A 289 ACQHNTCGGSCDRCCPGFNQQPWKPATTDSANECQSCNC 327 (403)
T ss_dssp CCCTTEESSSCCEECTTCCSSCCCCCCSSCCCCCCCCCC
T ss_pred ECcCcCcCCCCCCCCccccCCcccccccCCCcccccccc
Confidence 79999999999999999998742 123357999975
No 41
>1mox_A Epidermal growth factor receptor; EGFR, receptor, complex, transferase-growth F complex; HET: NAG FUC BMA MAN; 2.50A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1
Probab=41.17 E-value=13 Score=43.04 Aligned_cols=34 Identities=29% Similarity=0.681 Sum_probs=24.3
Q ss_pred ccCCCCcc---Cccce-eCCCCcccCCCCCCCCccccCC
Q 002008 804 KKCPKGLY---GTFCK-ECPIGTYKDMEGSDESLCTPCS 838 (983)
Q Consensus 804 ~~CP~Gly---G~fC~-eCP~GtYK~~~Gs~~~lC~pC~ 838 (983)
+.||.+|+ ...|+ +||.|||.+.. .....|++|.
T Consensus 269 ~~Cp~~~~l~~~g~Cv~~Cp~G~y~~~~-~~~~~C~~C~ 306 (501)
T 1mox_A 269 KKCPRNYVVTDHGSCVRACGADSYEMEE-DGVRKCKKCE 306 (501)
T ss_dssp SSCCTTCEECTTSBEESSCCSSCCCBCS-SSSCBCCCC-
T ss_pred cccCcccEeccCCEEeccCCCCCeecCC-CCCCcCcCCC
Confidence 47999984 56798 89999998642 1224799996
No 42
>3ftt_A Putative acetyltransferase sacol2570; galactoside O-acetyltransferase, enzyme, structural genomics, acyltransferase; 1.60A {Staphylococcus aureus subsp} PDB: 3v4e_A* 4dcl_A 4egg_A
Probab=38.21 E-value=60 Score=32.35 Aligned_cols=70 Identities=24% Similarity=0.398 Sum_probs=47.1
Q ss_pred eEEEeceeEeccceEEeecccEEEcCCeeeeecCCCceEE--------------EEeeeeEEEccCcEEEeeeEEEEEee
Q 002008 88 TCLLNSNLYLNYDLYIYGTGNLEILPKISIVCPVEGCKIT--------------FNMSGNINMGQYAAIVAGSVVVSAAN 153 (983)
Q Consensus 88 ~c~l~~~~~i~~~~~i~g~G~l~i~~~v~~~c~~~gc~i~--------------v~~sG~~~l~~~s~i~ag~v~l~a~n 153 (983)
.++|-..+.|...++|...+.+.|-++|.| .++|.|. ....+.++|++++.|-++.+.+ .+
T Consensus 74 ~~~IG~~~~I~~~~~i~~~~~v~IG~~v~I---g~~~~I~~~~~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~--~g 148 (199)
T 3ftt_A 74 NVKLGKNVYVNTNCYFMDGGQITIGDNVFI---GPNCGFYTATHPLNFHHRNEGFEKAGPIHIGSNTWFGGHVAVL--PG 148 (199)
T ss_dssp TEEECSSEEECTTEEEECSSCEEECSSEEE---CTTCEEECEECCSSHHHHHTTEEEECCEEECSSEEECTTCEEC--TT
T ss_pred CcEECCCeEECCCeEEecCCEEEECCCCEE---CCCCEEecCCCcCccccccccceecCCeEEcCCcEEcCCCEEC--CC
Confidence 357777788888888877788888888877 6777763 2336788888887775554443 24
Q ss_pred EEEccCceE
Q 002008 154 LTMDLNSSI 162 (983)
Q Consensus 154 i~i~~~S~I 162 (983)
++|.+++.|
T Consensus 149 v~IG~~~vI 157 (199)
T 3ftt_A 149 VTIGEGSVI 157 (199)
T ss_dssp CEECTTCEE
T ss_pred CEECCCCEE
Confidence 445555544
No 43
>2a55_A C4B-binding protein; complement, SCR, CCP module, immune system; NMR {Homo sapiens}
Probab=36.80 E-value=33 Score=32.20 Aligned_cols=68 Identities=16% Similarity=0.246 Sum_probs=44.2
Q ss_pred CCceEEcccCCCCc-c--CccceeCCC-CcccCCCCCCCCccc--cCCCCCCCCcceeEEeeCCccCCCCCcccccccc
Q 002008 797 EVGTVTGKKCPKGL-Y--GTFCKECPI-GTYKDMEGSDESLCT--PCSLELLPRRANFIYVRGGVSQPFCPYECISEKY 869 (983)
Q Consensus 797 ~~GTi~~~~CP~Gl-y--G~fC~eCP~-GtYK~~~Gs~~~lC~--pC~~~~~P~ra~~~yv~~G~~~~~Cpy~C~sdk~ 869 (983)
..|+.....|.+|| . |..=..|-. |+++. . ..|+ .|+.-..|..+.+.....=.....|.|.|++++.
T Consensus 25 ~~g~~v~y~C~~Gy~~l~G~~~~~C~~~G~Ws~-~----p~C~~~~C~~p~~~~nG~~~~~~~~~~g~~v~~~C~~Gy~ 98 (133)
T 2a55_A 25 KTGTTLKYTCLPGYVRSHSTQTLTCNSDGEWVY-N----TFCIYKRCRHPGELRNGQVEIKTDLSFGSQIEFSCSEGFF 98 (133)
T ss_dssp CTTCCCCCBCCTTEESCCSCCCCEECSSSSEEC-C----CCSEECBCCCCCCCTTBCCCCCSTTBSSCBCCCCBCTTCB
T ss_pred CCCCEEEEEeCCCCcccCCCCEEEECCCCeECC-C----CcCccCCCcCCCccCCceEEcCCCCcCCCEEEEEcCCCCE
Confidence 45777778999999 3 666666654 77766 2 4696 6986444554544422222346789999998754
No 44
>1ocx_A Maltose O-acetyltransferase; LEFT-handed parallel beta-helix; 2.15A {Escherichia coli} SCOP: b.81.1.3
Probab=33.58 E-value=66 Score=31.88 Aligned_cols=69 Identities=17% Similarity=0.301 Sum_probs=42.7
Q ss_pred EEeceeEeccceEEeecccEEEcCCeeeeecCCCceEEE--------------EeeeeEEEccCcEEEeeeEEEEEeeEE
Q 002008 90 LLNSNLYLNYDLYIYGTGNLEILPKISIVCPVEGCKITF--------------NMSGNINMGQYAAIVAGSVVVSAANLT 155 (983)
Q Consensus 90 ~l~~~~~i~~~~~i~g~G~l~i~~~v~~~c~~~gc~i~v--------------~~sG~~~l~~~s~i~ag~v~l~a~ni~ 155 (983)
+|-..+.|...++|...+.+.|-+++.| .++|.|.- ...+.++|++++.|-++.+.+ .+++
T Consensus 74 ~IG~~~~I~~~~~i~~~~~i~IG~~v~I---g~~v~I~~~~h~~~~~~~~~~~~~~~~v~IG~~v~Ig~~a~I~--~gv~ 148 (182)
T 1ocx_A 74 FLGNNFFANFDCVMLDVCPIRIGDNCML---APGVHIYTATHPIDPVARNSGAELGKPVTIGNNVWIGGRAVIN--PGVT 148 (182)
T ss_dssp EECSSEEECSSEEEECSSCEEECTTCEE---CTTCEEECEECCSSHHHHTTTCBEECCEEECTTCEECTTCEEC--TTCE
T ss_pred EECCCcEEeCCeEEEeccceEEcCCcEE---eCCcEEEeCCCccChhhcccCccccCCeEEeCCeEECCCCEEC--CCcE
Confidence 4555566666666666677777777766 56666531 125678888887776664443 3455
Q ss_pred EccCceEE
Q 002008 156 MDLNSSIN 163 (983)
Q Consensus 156 i~~~S~Id 163 (983)
|.+++.|-
T Consensus 149 IG~~~vIg 156 (182)
T 1ocx_A 149 IGDNVVVA 156 (182)
T ss_dssp ECTTCEEC
T ss_pred ECCCCEEC
Confidence 66555553
No 45
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=32.95 E-value=19 Score=41.14 Aligned_cols=35 Identities=17% Similarity=0.346 Sum_probs=26.9
Q ss_pred cCCCCccCccceeCCCCcccCCCC---------CCCCccccCCC
Q 002008 805 KCPKGLYGTFCKECPIGTYKDMEG---------SDESLCTPCSL 839 (983)
Q Consensus 805 ~CP~GlyG~fC~eCP~GtYK~~~G---------s~~~lC~pC~~ 839 (983)
.|+.++.|..|++|..++|.+... .+...|+||+-
T Consensus 316 ~C~~~ttG~~CE~C~pgy~~~P~~~gt~~p~~~g~~~~C~pC~C 359 (426)
T 3zyj_B 316 ECEHNTTGPDCGKCKKNYQGRPWSPGSYLPIPKGAANACIPSIS 359 (426)
T ss_dssp CCCTTEESSSSCEECTTCCSSCCCCCBCCSSSSCBCCCCCCCCC
T ss_pred eCCCCCcCCCccccccccccCcccCCcccccCCCCCCcccCCCC
Confidence 499999999999999999865321 12346999875
No 46
>2p2o_A Maltose transacetylase; GK1921, GKA001001921.1, geobacillus kaustophilus structural genomics, PSI; 1.74A {Geobacillus kaustophilus} PDB: 2ic7_A
Probab=32.93 E-value=67 Score=31.85 Aligned_cols=70 Identities=20% Similarity=0.247 Sum_probs=42.7
Q ss_pred EEEeceeEeccceEEeecccEEEcCCeeeeecCCCceEEE--------------EeeeeEEEccCcEEEeeeEEEEEeeE
Q 002008 89 CLLNSNLYLNYDLYIYGTGNLEILPKISIVCPVEGCKITF--------------NMSGNINMGQYAAIVAGSVVVSAANL 154 (983)
Q Consensus 89 c~l~~~~~i~~~~~i~g~G~l~i~~~v~~~c~~~gc~i~v--------------~~sG~~~l~~~s~i~ag~v~l~a~ni 154 (983)
+.|-..+.|...++|...+++.|-+++.| .++|.|.- ...+.++|++++.|-++.+.+ .++
T Consensus 75 v~IG~~~~i~~~~~i~~~~~i~IG~~v~I---g~~v~I~~~~h~~~~~~~~~~~~~~~~v~IGd~v~IG~~~~I~--~gv 149 (185)
T 2p2o_A 75 IHVGENFFMNFDGVILDVCEVRIGDHCFI---GPGVHIYTATHPLDPHERNSGLEYGKPVVIGHNVWIGGRAVIN--PGV 149 (185)
T ss_dssp EEECTTEEECSSEEEECSSCEEECTTCEE---CTTCEEECEECCSSHHHHHTCCBEECCEEECSSCEECTTCEEC--TTC
T ss_pred EEECCeeEEcCCeEEEeccceEECCCcEE---eCCCEEEcCCCcCChhhcccCccccCCeEEcCCeEECCCCEEC--CCC
Confidence 45556666666666666677788777766 66666631 125677888877776554332 345
Q ss_pred EEccCceEE
Q 002008 155 TMDLNSSIN 163 (983)
Q Consensus 155 ~i~~~S~Id 163 (983)
+|.+++.|-
T Consensus 150 ~IG~~~vIg 158 (185)
T 2p2o_A 150 TIGDNAVIA 158 (185)
T ss_dssp EECTTCEEC
T ss_pred EECCCCEEC
Confidence 555555553
No 47
>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus musculus}
Probab=31.99 E-value=22 Score=39.90 Aligned_cols=36 Identities=25% Similarity=0.527 Sum_probs=28.4
Q ss_pred ccCCCCccCccceeCCCCcccCC----CCCCCCccccCCC
Q 002008 804 KKCPKGLYGTFCKECPIGTYKDM----EGSDESLCTPCSL 839 (983)
Q Consensus 804 ~~CP~GlyG~fC~eCP~GtYK~~----~Gs~~~lC~pC~~ 839 (983)
-.|++++.|..|++|-.|+|... +..+...|++|.=
T Consensus 274 C~C~~nt~G~~Ce~C~~gy~~~p~~~g~~~~~~~C~~C~C 313 (375)
T 4aqt_A 274 CNCKHNTYGVDCEKCLPFFNDRPWRRATAESASECLPCDC 313 (375)
T ss_dssp ECCCTTEESTTSCEECTTCCSSCCCCCCSSCCCCCCCCCG
T ss_pred eeCcCCCcCCCcccCCCCCcCCCCCCCccCCCCCCCCCcC
Confidence 48999999999999999999764 2223456998873
No 48
>3i2t_A Epidermal growth factor receptor, isoform A; EGFR, ectodomain, unliganded, autoinhibited, ATP nucleotide-binding, tyrosine-protein kinase; HET: NDG NAG BMA; 2.70A {Drosophila melanogaster} PDB: 3ltf_A* 3ltg_A
Probab=31.71 E-value=19 Score=42.24 Aligned_cols=30 Identities=33% Similarity=0.891 Sum_probs=22.4
Q ss_pred ccCCCCcc--Cccc-eeCCCCcccCCCCCCCCccccCC
Q 002008 804 KKCPKGLY--GTFC-KECPIGTYKDMEGSDESLCTPCS 838 (983)
Q Consensus 804 ~~CP~Gly--G~fC-~eCP~GtYK~~~Gs~~~lC~pC~ 838 (983)
+.||..|. ...| .+||.|+|+.. ..|.||.
T Consensus 271 ~~Cp~~~~~~~~~Cv~~CP~g~~~~~-----~~C~~C~ 303 (551)
T 3i2t_A 271 KECPGHLLRDNGACVRSCPQDKMDKG-----GECVPCN 303 (551)
T ss_dssp SSCCTTSEEETTEEESSCCTTEEESS-----SBEEECS
T ss_pred hhCCHHHcccCCcccccCCCCCcccC-----CeeeECC
Confidence 58888874 5668 47999988752 4799886
No 49
>3srt_A Maltose O-acetyltransferase; structural genomics, the center structural genomics of infectious diseases, csgid; 2.50A {Clostridium difficile} PDB: 4ebh_A*
Probab=30.64 E-value=75 Score=31.34 Aligned_cols=58 Identities=17% Similarity=0.354 Sum_probs=39.2
Q ss_pred eEEEeceeEeccceEEeecccEEEcCCeeeeecCCCceEE--------------EEeeeeEEEccCcEEEeeeEE
Q 002008 88 TCLLNSNLYLNYDLYIYGTGNLEILPKISIVCPVEGCKIT--------------FNMSGNINMGQYAAIVAGSVV 148 (983)
Q Consensus 88 ~c~l~~~~~i~~~~~i~g~G~l~i~~~v~~~c~~~gc~i~--------------v~~sG~~~l~~~s~i~ag~v~ 148 (983)
.++|-..+.|..+.+|...+.+.|-+++.| .++|.|. ....+.++|++++.|=++.+.
T Consensus 76 ~~~IG~~~~i~~~~~i~~~~~i~IG~~~~I---g~~v~I~~~~h~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I 147 (188)
T 3srt_A 76 NIHVGENFFANYDCIFLDVCKIEIGDNVML---APNVQIYTAYHPIDAQLRNSGIEYGSPVKIGDNVWIGGGVII 147 (188)
T ss_dssp TEEECTTEEECTTEEEECSSCEEECSSCEE---CTTCEEECEECCSSHHHHHTTEEEECCEEECSSCEECTTCEE
T ss_pred CeEECCcccccCceEEecCCceEECCeeEE---CCCcEEeeCCccCchhhccccceECCCcEECCCcEEcCCCEE
Confidence 346777777888877777777788887766 5666662 123567788887777555443
No 50
>3nz2_A Hexapeptide-repeat containing-acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: ACO; 2.35A {Vibrio cholerae o1 biovar eltor} SCOP: b.81.1.0 PDB: 3ect_A*
Probab=30.36 E-value=69 Score=31.81 Aligned_cols=70 Identities=13% Similarity=0.167 Sum_probs=43.6
Q ss_pred eEEEeceeEeccceEEeecccEEEcCCeeeeecCCCceEEE--------------EeeeeEEEccCcEEEeeeEEEEEee
Q 002008 88 TCLLNSNLYLNYDLYIYGTGNLEILPKISIVCPVEGCKITF--------------NMSGNINMGQYAAIVAGSVVVSAAN 153 (983)
Q Consensus 88 ~c~l~~~~~i~~~~~i~g~G~l~i~~~v~~~c~~~gc~i~v--------------~~sG~~~l~~~s~i~ag~v~l~a~n 153 (983)
.++|-..+.|...++|.....+.|-+++.| .++|.|.- .+.+.++|++++.|=++.+.+ .+
T Consensus 76 ~v~IG~~~~I~~~~~i~~~~~i~IG~~~~I---g~~~~I~~~~~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~--~g 150 (195)
T 3nz2_A 76 TIRIGDHTFINMNVVMLDGAPITIGDHVLI---GPSTQFYTASHSLDYRRRQAWETICKPIVIEDDVWIGGNVVIN--QG 150 (195)
T ss_dssp TEEECTTCEECTTEEEECSSCEEECTTCEE---CTTCEEECEECCSSGGGTTTCCCEECCEEECTTCEECTTCEEC--TT
T ss_pred CeEECCCcEECcCCEEecCceEEECCCCEE---CCCCEEecCCCCcccccccccceecCCeEECCCCEEcCCCEEC--CC
Confidence 456667777777777776777778777766 56665532 245677888887776554432 23
Q ss_pred EEEccCceE
Q 002008 154 LTMDLNSSI 162 (983)
Q Consensus 154 i~i~~~S~I 162 (983)
++|.+++.|
T Consensus 151 v~IG~~~vI 159 (195)
T 3nz2_A 151 VTIGARSVV 159 (195)
T ss_dssp CEECTTCEE
T ss_pred CEECCCCEE
Confidence 444444444
No 51
>1krr_A Galactoside O-acetyltransferase; LEFT-handed parallel beta helix; HET: ACO; 2.50A {Escherichia coli} SCOP: b.81.1.3 PDB: 1kqa_A* 1kru_A* 1krv_A*
Probab=29.89 E-value=82 Score=31.98 Aligned_cols=70 Identities=23% Similarity=0.267 Sum_probs=43.3
Q ss_pred EEEeceeEeccceEEeecccEEEcCCeeeeecCCCceEEE--------------EeeeeEEEccCcEEEeeeEEEEEeeE
Q 002008 89 CLLNSNLYLNYDLYIYGTGNLEILPKISIVCPVEGCKITF--------------NMSGNINMGQYAAIVAGSVVVSAANL 154 (983)
Q Consensus 89 c~l~~~~~i~~~~~i~g~G~l~i~~~v~~~c~~~gc~i~v--------------~~sG~~~l~~~s~i~ag~v~l~a~ni 154 (983)
+.|-..+.|...++|...+.+.|-+++.| .++|.|.- .+.+.++|++++.|-++.+.+ .++
T Consensus 76 i~IG~~~~I~~~~~i~~~~~i~IG~~v~I---g~~v~I~~~~h~~~~~~~~~~~~~~~~v~IGd~v~IG~~a~I~--~gv 150 (203)
T 1krr_A 76 IHIGRNFYANFNLTIVDDYTVTIGDNVLI---APNVTLSVTGHPVHHELRKNGEMYSFPITIGNNVWIGSHVVIN--PGV 150 (203)
T ss_dssp EEECSSCEECSCEEEECSSCEEECSSCEE---CSSCEEESEECCSSTTTCTTCCBEECCEEECTTCEECTTCEEC--TTC
T ss_pred eEECCeeEECCccEEecccceEECCCCEE---CCCCEEecCCcccchhhcccCceeCCCcEECCCeEECCCCEEe--CCe
Confidence 35666666666666666677777777766 55655531 134668888887776665443 345
Q ss_pred EEccCceEE
Q 002008 155 TMDLNSSIN 163 (983)
Q Consensus 155 ~i~~~S~Id 163 (983)
+|.+++.|-
T Consensus 151 ~IG~~~vIg 159 (203)
T 1krr_A 151 TIGDNSVIG 159 (203)
T ss_dssp EECTTCEEC
T ss_pred EECCCCEEC
Confidence 555555554
No 52
>2qy0_A Complement C1R subcomponent; serine protease, beta barrel, complement pathway like domain, glycoprotein, hydrolase, hydroxylation, immune response; 2.60A {Homo sapiens}
Probab=27.77 E-value=39 Score=32.36 Aligned_cols=70 Identities=20% Similarity=0.380 Sum_probs=45.5
Q ss_pred CCceEEcccCCCCcc--C------ccceeC-CCCcccCCCCCCCCccc--cCCCCCCCCcceeEEee--CC-ccCCCCCc
Q 002008 797 EVGTVTGKKCPKGLY--G------TFCKEC-PIGTYKDMEGSDESLCT--PCSLELLPRRANFIYVR--GG-VSQPFCPY 862 (983)
Q Consensus 797 ~~GTi~~~~CP~Gly--G------~fC~eC-P~GtYK~~~Gs~~~lC~--pC~~~~~P~ra~~~yv~--~G-~~~~~Cpy 862 (983)
..|+.....|.+||. | .+=..| .-|++... ...|+ .|+.-..+..+.+.+.. +. .....|.|
T Consensus 25 ~~g~~v~y~C~~Gy~l~g~~~~~~s~~~~C~~~G~Ws~~----~p~C~~~~C~~p~~~~nG~~~~~~~~~~~~~g~~v~y 100 (159)
T 2qy0_A 25 QFRDYFIATCKQGYQLIEGNQVLHSFTAVCQDDGTWHRA----MPRCKIKDCGQPRNLPNGDFRYTTTMGVNTYKARIQY 100 (159)
T ss_dssp BTTCEEEEEECTTEEEEETTEEESCCEEEBCTTSCBSSC----CCEEEECBCCSCCCCTTEEEEESSSTTCCBTTCEEEE
T ss_pred ccCCEEEEEcCCCcEEccCCcccceeEEECCCCCcCcCC----CCccccccCCCCCCCCCCeeEeccCCCCcccCCEEEE
Confidence 456777789999995 4 355666 46777763 35797 79864445555555431 11 33567999
Q ss_pred cccccccc
Q 002008 863 ECISEKYR 870 (983)
Q Consensus 863 ~C~sdk~~ 870 (983)
.|+++++.
T Consensus 101 ~C~~Gy~~ 108 (159)
T 2qy0_A 101 YCHEPYYK 108 (159)
T ss_dssp EECTTTEE
T ss_pred ECCCccee
Confidence 99988763
No 53
>3mc4_A WW/RSP5/WWP domain:bacterial transferase hexapept repeat:serine O-acetyltransferase...; ssgcid, structural genomics; 1.95A {Brucella melitensis biovar abortus}
Probab=26.30 E-value=70 Score=34.63 Aligned_cols=70 Identities=17% Similarity=0.226 Sum_probs=35.2
Q ss_pred eEEEeceeEeccceEEeecccEEEcCCeeeeecCCCceEE--EEeee--------eEEEccCcEEEeeeEEEEEeeEEEc
Q 002008 88 TCLLNSNLYLNYDLYIYGTGNLEILPKISIVCPVEGCKIT--FNMSG--------NINMGQYAAIVAGSVVVSAANLTMD 157 (983)
Q Consensus 88 ~c~l~~~~~i~~~~~i~g~G~l~i~~~v~~~c~~~gc~i~--v~~sG--------~~~l~~~s~i~ag~v~l~a~ni~i~ 157 (983)
-|.|...+.|...++|.....+.|-+++.| ...|.|. +.+.+ ..+|++++.|-++...+ .+++|.
T Consensus 164 gi~I~p~a~IG~~v~I~hg~gvvIG~~~~I---Gd~v~I~~gvtIg~~~~~~~~r~~~IGd~v~IGaga~Il--~gv~IG 238 (287)
T 3mc4_A 164 QTDIHPAARLGSGLFLDHATGLVVGETAVV---EDNVSILHGVTLGGTGKSSGDRHPKIRQGVLIGAGAKIL--GNIQVG 238 (287)
T ss_dssp CCEECTTCEECSSCEEESCTTCEECTTCEE---CSSCEEETTCEEEC-----CCCSCEECTTCEECTTCEEE--SSCEEC
T ss_pred CeEECCCCEECCCeEEccCCCeEECCCeEE---CCCCEEcCCCEEcCCcccCCCcCCEECCCCEECCCCEEC--CCcEEC
Confidence 356667777777777764334444444333 2333322 11122 25677666665554443 345555
Q ss_pred cCceE
Q 002008 158 LNSSI 162 (983)
Q Consensus 158 ~~S~I 162 (983)
+++.|
T Consensus 239 ~~a~I 243 (287)
T 3mc4_A 239 QCSKI 243 (287)
T ss_dssp TTCEE
T ss_pred CCCEE
Confidence 55554
No 54
>3hjj_A Maltose O-acetyltransferase; LEFT-handed beta-helix, acyltransferase, struct genomics; 2.15A {Bacillus anthracis} SCOP: b.81.1.0 PDB: 3igj_A*
Probab=25.90 E-value=80 Score=31.06 Aligned_cols=70 Identities=13% Similarity=0.260 Sum_probs=42.9
Q ss_pred eEEEeceeEeccceEEeecccEEEcCCeeeeecCCCceEE--------------EEeeeeEEEccCcEEEeeeEEEEEee
Q 002008 88 TCLLNSNLYLNYDLYIYGTGNLEILPKISIVCPVEGCKIT--------------FNMSGNINMGQYAAIVAGSVVVSAAN 153 (983)
Q Consensus 88 ~c~l~~~~~i~~~~~i~g~G~l~i~~~v~~~c~~~gc~i~--------------v~~sG~~~l~~~s~i~ag~v~l~a~n 153 (983)
-++|-..+.|...++|...+.+.|-+++.| .++|.|. ....+.++|++++.|-++.+.+ .+
T Consensus 78 ~v~IG~~~~I~~~~~i~~~~~v~IG~~~~I---g~~~~I~~~~~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~--~g 152 (190)
T 3hjj_A 78 NIHVGKSFFANFNCVILDVCEVRIGDHCMF---APGVHIYTATHPLHPVERNSGKEYGKPVKIGNNVWVGGGAIIN--PG 152 (190)
T ss_dssp TEEECTTCEECTTCEEECSSCEEECTTCEE---CTTCEEECEECCSSHHHHTSSEEEECCEEECTTCEECTTCEEC--TT
T ss_pred ceEECCceeeCCCeEEEeCCCeEECCceEE---cCCcEEecCCccCchhhccccccccCCeEECCCCEECCCCEEC--CC
Confidence 346667777777777776677777777766 5666653 1235667888877775554332 23
Q ss_pred EEEccCceE
Q 002008 154 LTMDLNSSI 162 (983)
Q Consensus 154 i~i~~~S~I 162 (983)
++|.+++.|
T Consensus 153 v~IG~~~vI 161 (190)
T 3hjj_A 153 VSIGDNAVI 161 (190)
T ss_dssp CEECTTCEE
T ss_pred CEECCCCEE
Confidence 444444444
No 55
>1gkn_A Complement receptor type 1; module, SCR, structure; NMR {Homo sapiens} SCOP: g.18.1.1 g.18.1.1
Probab=25.53 E-value=59 Score=29.98 Aligned_cols=69 Identities=14% Similarity=0.246 Sum_probs=43.8
Q ss_pred CCceEEcccCCCCc-cCccceeCC-CCcccCCCCCCCCccc--cCCCCCCCCcceeEEeeCCccCCCCCcccccccc
Q 002008 797 EVGTVTGKKCPKGL-YGTFCKECP-IGTYKDMEGSDESLCT--PCSLELLPRRANFIYVRGGVSQPFCPYECISEKY 869 (983)
Q Consensus 797 ~~GTi~~~~CP~Gl-yG~fC~eCP-~GtYK~~~Gs~~~lC~--pC~~~~~P~ra~~~yv~~G~~~~~Cpy~C~sdk~ 869 (983)
..|+.....|.+|| .|..=..|- -|++... ...|+ .|+.-..|....+...+.-.....|.|.|++++.
T Consensus 27 ~~g~~~~y~C~~Gyl~G~~~~~C~~~g~Ws~~----~p~C~~~~C~~p~~~~nG~~~~~~~~~~g~~v~~~C~~Gy~ 99 (128)
T 1gkn_A 27 PIGTSLKYECRPEYYGRPFSITCLDNLVWSSP----KDVCKRKSCKTPPDPVNGMVHVITDIQVGSRITYSCTTGHR 99 (128)
T ss_dssp ESSCEEEEEECTTEESCCEEEEBCSSSCBCCC----CSCCEECBCCCCCCCTTEEEEESSCCBTTCEEEEEECTTEE
T ss_pred CCCCEEEEEcCCCCcCCCCceEECCCCcCCCC----CCeEcceECcCCCCCCCcEEEeccCCccCCEEEEEeCCCCE
Confidence 45777778999999 454444553 4666653 35697 5997545555555433222346679999998753
No 56
>3ixc_A Hexapeptide transferase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, GRAM-negative bacteria; 1.61A {Anaplasma phagocytophilum}
Probab=25.01 E-value=1.4e+02 Score=29.17 Aligned_cols=13 Identities=23% Similarity=0.366 Sum_probs=5.6
Q ss_pred eeEEEccCcEEEe
Q 002008 132 GNINMGQYAAIVA 144 (983)
Q Consensus 132 G~~~l~~~s~i~a 144 (983)
+.++|++++.|-.
T Consensus 71 ~~i~IG~~~~I~~ 83 (191)
T 3ixc_A 71 DKIEVGEGTNIQD 83 (191)
T ss_dssp EEEEECTTCEECT
T ss_pred CCeEECCCCEECC
Confidence 3444444444433
No 57
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Probab=24.16 E-value=31 Score=38.94 Aligned_cols=22 Identities=36% Similarity=0.755 Sum_probs=18.7
Q ss_pred ccCCCCccCcccee-CCCCcccC
Q 002008 804 KKCPKGLYGTFCKE-CPIGTYKD 825 (983)
Q Consensus 804 ~~CP~GlyG~fC~e-CP~GtYK~ 825 (983)
=.|++||.|..|++ |+.|||-.
T Consensus 265 C~C~~G~~G~~C~~~C~~G~~G~ 287 (423)
T 2gy5_A 265 CSCATGWKGLQCNEACHPGFYGP 287 (423)
T ss_dssp EECCBTCBSGGGCBCCCTTBCSB
T ss_pred EEeCCCcccccccCccCCCCcCC
Confidence 36999999999996 99998854
No 58
>2odl_A Adhesin; HMW1, secretion domain, beta helix, cell adhesion; 1.92A {Haemophilus influenzae}
Probab=23.70 E-value=46 Score=37.46 Aligned_cols=101 Identities=22% Similarity=0.238 Sum_probs=57.4
Q ss_pred CCccEEEEEEceeeeec--cEEEEecCCCCC--CCcc--cCCccEEEEEe--eeecceEEEeecCCCCCCCCCCeEEEEe
Q 002008 237 NGGGRIKLLVKDMLYLN--GSVTAEGGDGGL--KGGG--GSGGSIYVLAV--KLKGYGFISAAGGRGWGGGGGGRVSLDC 308 (983)
Q Consensus 237 ~GGG~I~i~a~~~l~~~--G~i~AnG~~g~~--~gGG--GSGGsI~l~a~--~l~g~G~isA~GG~G~GGGGGGRIai~~ 308 (983)
.=||.|.|.+.+ +.|. ..|.|.|..++. =+|. |.+....-.|. .+....+|.|.. -|-||||.|..
T Consensus 253 g~GG~V~i~g~~-v~l~~gA~I~asG~~GG~v~iGGd~qG~~~~~~~~A~~t~v~~~s~I~a~a-----~g~GG~vivws 326 (373)
T 2odl_A 253 AKGGKLMITGDK-VTLKTGAVIDLSGKEGGETYLGGDERGEGKNGIQLAKKTSLEKGSTINVSG-----KEKGGRAIVWG 326 (373)
T ss_dssp EECCEEEEEEEE-EEECTTCEEECCEEECCEEEESSCGGGCCGGGCCCCSEEEECTTCEEECCE-----EEECCEEEEEC
T ss_pred CCCCEEEEEcce-EEecCCCEEEeeccCCCcEEEeCCccccCCccccccceEEEcCCCEEEeec-----cCCCcEEEEec
Confidence 347899999876 7773 578887765432 0111 22221111221 455556777664 13688988763
Q ss_pred ecccCCeeEEEecCCCCCCCCCCCCcceeeeeccccEEEe
Q 002008 309 YSIQEDIKVTVHGGFSIGCPENAGAAGTNFNAYLRSLRVS 348 (983)
Q Consensus 309 ~s~~~~~~i~~~GG~s~gc~~~aG~aGT~y~~~~~sL~vd 348 (983)
-...++++|.+.||- ...|..|-+.....+.|+.+
T Consensus 327 d~t~f~G~I~ArGgg-----~~~G~GG~vE~Sg~~~~~~~ 361 (373)
T 2odl_A 327 DIALIDGNINAQGSG-----DIAKTGGFVETSGHDLFIKD 361 (373)
T ss_dssp SEEEECSEEECCCSS-----CHHHHCCEEEEECSEEEECT
T ss_pred cceeEeEEEEEecCC-----CcCCcccEEEccCceeEecC
Confidence 323466778887751 12355777766665545434
No 59
>3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A*
Probab=21.76 E-value=2.4e+02 Score=27.61 Aligned_cols=52 Identities=15% Similarity=0.146 Sum_probs=29.4
Q ss_pred EEeceeEeccceEEeecccEEEcCCeeeeecCCCceEEEEeeeeEEEccCcEEEeeeE
Q 002008 90 LLNSNLYLNYDLYIYGTGNLEILPKISIVCPVEGCKITFNMSGNINMGQYAAIVAGSV 147 (983)
Q Consensus 90 ~l~~~~~i~~~~~i~g~G~l~i~~~v~~~c~~~gc~i~v~~sG~~~l~~~s~i~ag~v 147 (983)
+|-..+.|...++|. ++++|-+++.| .++|.|. ....+++|++++.|-.+..
T Consensus 54 ~IG~~~~I~~~~~I~--~~v~IG~~~~I---~~~~~I~-~~~~~~~IG~~~~Ig~~~~ 105 (205)
T 3vbi_A 54 SIGNNVRIDDFCILS--GKVTIGSYSHI---AAYTALY-GGEVGIEMYDFANISSRTI 105 (205)
T ss_dssp EECSSEEECTTCEEE--EEEEECSSEEE---CTTCEEE-EEEEEEEECTTCEECTTCE
T ss_pred EECCCCEECCCCEEc--cceEECCCCEE---CCCeEEE-cCCccEEECCCCEECCCcE
Confidence 444444555555553 46777777766 5566653 1234577777776655533
No 60
>3f1x_A Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 A6KZB9_BACV8, structural genomics, P protein structure initiative; 2.00A {Bacteroides vulgatus atcc 8482}
Probab=20.97 E-value=1.1e+02 Score=33.35 Aligned_cols=27 Identities=4% Similarity=0.226 Sum_probs=16.7
Q ss_pred EEccCcEEEeeeEEEEEeeEEEccCceEE
Q 002008 135 NMGQYAAIVAGSVVVSAANLTMDLNSSIN 163 (983)
Q Consensus 135 ~l~~~s~i~ag~v~l~a~ni~i~~~S~Id 163 (983)
+|++++.|-++...+ .+++|.+++.|-
T Consensus 253 ~IGd~V~IGaga~Il--~gv~IGd~a~IG 279 (310)
T 3f1x_A 253 ILEDDVIVYSNATIL--GRVTIGKGATVG 279 (310)
T ss_dssp EECTTCEECTTCEEE--SSCEECTTCEEC
T ss_pred EECCCcEEcCCCEEC--CCcEECCCCEEC
Confidence 677777666665444 556666666554
Done!