BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002011
(982 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GTX|A Chain A, Crystal Structure Of Mouse Enpp1 In Complex With Tmp
pdb|4GTX|B Chain B, Crystal Structure Of Mouse Enpp1 In Complex With Tmp
pdb|4GTY|A Chain A, Crystal Structure Of Mouse Enpp1 In Complex With Gmp
pdb|4GTY|B Chain B, Crystal Structure Of Mouse Enpp1 In Complex With Gmp
pdb|4GTZ|A Chain A, Crystal Structure Of Mouse Enpp1 In Complex With Cmp
pdb|4GTZ|B Chain B, Crystal Structure Of Mouse Enpp1 In Complex With Cmp
Length = 823
Score = 37.7 bits (86), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 63/269 (23%), Positives = 104/269 (38%), Gaps = 75/269 (27%)
Query: 59 PVTP-RFDAPAKRLVLFVADGLRADKFYEPDSEGNYRAPFLRSVIQNQGCWGVSHARP-- 115
P P F++P +LF DG RA+ + + G P + S ++N G + + RP
Sbjct: 101 PECPAEFESPPT--LLFSLDGFRAEYLH---TWGGL-LPVI-SKLKNCGTY-TKNMRPMY 152
Query: 116 PTESRPGHVAIIAGFYEDPSAVTKG-----------------------WKANPVEFDSVF 152
PT++ P H +I+ G Y + + +K P+ +
Sbjct: 153 PTKTFPNHYSIVTGLYPESHGIIDNKMYDPKMNASFSLKSKEKFNPLWYKGQPIWVTANH 212
Query: 153 NQSRHTISF--GS--------PDIVPIFCGALPHSTWNSYPHDFEDFATDASFLDEWSFD 202
+ + F GS PDI ++ G++P F + EW
Sbjct: 213 QEVKSGTYFWPGSDVEIDGILPDIYKVYNGSVP-------------FEERILAVLEW--- 256
Query: 203 QFQSLLNRSNEDPKLRKLLLQDKLVIFLHLLGCDSNGHAHRPFSSIYLNNVKVVDHIAKR 262
L S+E P L L++ DS+GH+H P SS + ++ VD +
Sbjct: 257 ----LQLPSHERPHFYTLYLEEP----------DSSGHSHGPVSSEVIKALQKVDRLVGM 302
Query: 263 MYFLLEDYFKDNRTAYIFTADHGMSDKGS 291
+ L+D D I +DHGM ++GS
Sbjct: 303 LMDGLKDLGLDKCLNLILISDHGM-EQGS 330
>pdb|4B56|A Chain A, Structure Of Ectonucleotide
Pyrophosphatase-Phosphodiesterase-1 (Npp1)
pdb|4B56|B Chain B, Structure Of Ectonucleotide
Pyrophosphatase-Phosphodiesterase-1 (Npp1)
Length = 820
Score = 37.4 bits (85), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 63/269 (23%), Positives = 104/269 (38%), Gaps = 75/269 (27%)
Query: 59 PVTP-RFDAPAKRLVLFVADGLRADKFYEPDSEGNYRAPFLRSVIQNQGCWGVSHARP-- 115
P P F++P +LF DG RA+ + + G P + S ++N G + + RP
Sbjct: 97 PECPAEFESPPT--LLFSLDGFRAEYLH---TWGGL-LPVI-SKLKNCGTY-TKNMRPMY 148
Query: 116 PTESRPGHVAIIAGFYEDPSAVTKG-----------------------WKANPVEFDSVF 152
PT++ P H +I+ G Y + + +K P+ +
Sbjct: 149 PTKTFPNHYSIVTGLYPESHGIIDNKMYDPKMNASFSLKSKEKFNPLWYKGQPIWVTANH 208
Query: 153 NQSRHTISF--GS--------PDIVPIFCGALPHSTWNSYPHDFEDFATDASFLDEWSFD 202
+ + F GS PDI ++ G++P F + EW
Sbjct: 209 QEVKSGTYFWPGSDVEIDGILPDIYKVYNGSVP-------------FEERILAVLEW--- 252
Query: 203 QFQSLLNRSNEDPKLRKLLLQDKLVIFLHLLGCDSNGHAHRPFSSIYLNNVKVVDHIAKR 262
L S+E P L L++ DS+GH+H P SS + ++ VD +
Sbjct: 253 ----LQLPSHERPHFYTLYLEEP----------DSSGHSHGPVSSEVIKALQKVDRLVGM 298
Query: 263 MYFLLEDYFKDNRTAYIFTADHGMSDKGS 291
+ L+D D I +DHGM ++GS
Sbjct: 299 LMDGLKDLGLDKCLNLILISDHGM-EQGS 326
>pdb|4GTW|A Chain A, Crystal Structure Of Mouse Enpp1 In Complex With Amp
pdb|4GTW|B Chain B, Crystal Structure Of Mouse Enpp1 In Complex With Amp
Length = 823
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 62/269 (23%), Positives = 103/269 (38%), Gaps = 75/269 (27%)
Query: 59 PVTP-RFDAPAKRLVLFVADGLRADKFYEPDSEGNYRAPFLRSVIQNQGCWGVSHARP-- 115
P P F++P +LF DG RA+ + + G P + S ++N G + + RP
Sbjct: 101 PECPAEFESPPT--LLFSLDGFRAEYLH---TWGGL-LPVI-SKLKNCGTY-TKNXRPXY 152
Query: 116 PTESRPGHVAIIAGFYEDPSAVTKG-----------------------WKANPVEFDSVF 152
PT++ P H +I+ G Y + + +K P+ +
Sbjct: 153 PTKTFPNHYSIVTGLYPESHGIIDNKXYDPKXNASFSLKSKEKFNPLWYKGQPIWVTANH 212
Query: 153 NQSRHTISF--GS--------PDIVPIFCGALPHSTWNSYPHDFEDFATDASFLDEWSFD 202
+ + F GS PDI ++ G++P F + EW
Sbjct: 213 QEVKSGTYFWPGSDVEIDGILPDIYKVYNGSVP-------------FEERILAVLEW--- 256
Query: 203 QFQSLLNRSNEDPKLRKLLLQDKLVIFLHLLGCDSNGHAHRPFSSIYLNNVKVVDHIAKR 262
L S+E P L L++ DS+GH+H P SS + ++ VD +
Sbjct: 257 ----LQLPSHERPHFYTLYLEEP----------DSSGHSHGPVSSEVIKALQKVDRLVGX 302
Query: 263 MYFLLEDYFKDNRTAYIFTADHGMSDKGS 291
+ L+D D I +DHG ++GS
Sbjct: 303 LXDGLKDLGLDKCLNLILISDHGX-EQGS 330
>pdb|2IFY|A Chain A, Structure Of Bacillus Anthracis Cofactor-Independent
Phosphoglucerate Mutase
Length = 508
Score = 33.1 bits (74), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 55/151 (36%), Gaps = 40/151 (26%)
Query: 227 VIFLHLLGCDSNGHAHRPFSSIYLNNVKVVDHIAKRMYFLLEDYFKDNRTAYIFTADHGM 286
VI L+ CD GH S + +K V+ + + ++E + A I TADHG
Sbjct: 392 VIILNFANCDMVGH-----SGMMEPTIKAVEATDECLGKVVEAILAKDGVALI-TADHGN 445
Query: 287 SDKGSHGDGHPTNTDTPLVVWGAGVQHPKPISETNHSDCGFLFIDEHAHDMPTPSEWGLN 346
+D+ +G P T TN P P N
Sbjct: 446 ADEELTSEGEPMTAHT-----------------TN----------------PVPFIVTKN 472
Query: 347 GIE-RVDVNQADIAPLMSTLLGLPCPVNSVG 376
+E R D DIAP M TLLG+ P G
Sbjct: 473 DVELREDGILGDIAPTMLTLLGVEQPKEMTG 503
>pdb|2ZKT|A Chain A, Structure Of Ph0037 Protein From Pyrococcus Horikoshii
pdb|2ZKT|B Chain B, Structure Of Ph0037 Protein From Pyrococcus Horikoshii
Length = 412
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 43/104 (41%), Gaps = 12/104 (11%)
Query: 211 SNEDPKLRKL--LLQDKLVIFLHLLGCDSNGHAHRPFSSIYLNNVKVVDHIAKRMYFLLE 268
+NE K +K LL+D +FLH D+ GH ++P L A RM +
Sbjct: 278 TNEMAKAKKAVELLKDYDFVFLHFKPTDAAGHDNKPKLKAELIER------ADRMIGYIL 331
Query: 269 DYFKDNRTAYIFTADHGMSDKGSHGDGHPTNTDTPLVVWGAGVQ 312
D+ T DH + + G P PL++ G GV+
Sbjct: 332 DHVDLEEVVIAITGDHSTPCEVMNHSGDP----VPLLIAGGGVR 371
>pdb|2GSN|A Chain A, Structure Of Xac Nucleotide
PyrophosphatasePHOSPHODIESTERASE
pdb|2GSN|B Chain B, Structure Of Xac Nucleotide
PyrophosphatasePHOSPHODIESTERASE
pdb|2GSO|A Chain A, Structure Of Xac Nucleotide
PyrophosphatasePHOSPHODIESTERASE IN COMPLEX WITH
VANADATE
pdb|2GSO|B Chain B, Structure Of Xac Nucleotide
PyrophosphatasePHOSPHODIESTERASE IN COMPLEX WITH
VANADATE
pdb|2GSU|A Chain A, Structure Of Xac Nucleotide
Pyrophosphatase/phosphodiesterase In Complex With Amp
pdb|2GSU|B Chain B, Structure Of Xac Nucleotide
Pyrophosphatase/phosphodiesterase In Complex With Amp
pdb|2RH6|A Chain A, Structure Of Xac Npp For Evaluation Of Refinement
Methodology
pdb|2RH6|B Chain B, Structure Of Xac Npp For Evaluation Of Refinement
Methodology
Length = 393
Score = 29.6 bits (65), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 62/182 (34%), Gaps = 34/182 (18%)
Query: 120 RPGHVAIIAGFYEDPS------------AVTKGWKANPVEFDSVFNQSRHTISFGSPDIV 167
RP H I+ DP+ + W PV + V N +H ++ P
Sbjct: 63 RPDHHGIVHNSMRDPTLGGFWLSKSEAVGDARWWGGEPV-WVGVENTGQHAATWSWPGSE 121
Query: 168 PIFCGALPHSTWNSYPHDFE-DFATDASFLDEWSFDQFQSLLNRSNEDPKLRKLLLQDKL 226
G P S W Y D DA + W L Q
Sbjct: 122 AAIKGVRP-SQWRHYQKGVRLDTRVDA--VRGW-----------------LATDGAQRNR 161
Query: 227 VIFLHLLGCDSNGHAHRPFSSIYLNNVKVVDHIAKRMYFLLEDYFKDNRTAYIFTADHGM 286
++ L+ D GH H P S Y + V+ VD R+ ++ RT I +DHGM
Sbjct: 162 LVTLYFEHVDEAGHDHGPESRQYADAVRAVDAAIGRLLAGMQRDGTRARTNIIVVSDHGM 221
Query: 287 SD 288
++
Sbjct: 222 AE 223
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.140 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,203,376
Number of Sequences: 62578
Number of extensions: 1096462
Number of successful extensions: 2429
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2415
Number of HSP's gapped (non-prelim): 18
length of query: 982
length of database: 14,973,337
effective HSP length: 108
effective length of query: 874
effective length of database: 8,214,913
effective search space: 7179833962
effective search space used: 7179833962
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 56 (26.2 bits)