Query 002012
Match_columns 982
No_of_seqs 597 out of 4969
Neff 8.1
Searched_HMMs 46136
Date Thu Mar 28 14:31:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002012.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002012hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0542 clpA ATP-binding subun 100.0 2E-135 5E-140 1189.2 79.8 773 96-950 1-775 (786)
2 PRK10865 protein disaggregatio 100.0 4E-114 8E-119 1064.8 89.5 849 92-950 1-849 (857)
3 TIGR03346 chaperone_ClpB ATP-d 100.0 2E-113 4E-118 1065.1 93.7 846 97-950 1-846 (852)
4 TIGR03345 VI_ClpV1 type VI sec 100.0 8E-112 2E-116 1039.9 87.7 829 97-950 1-851 (852)
5 CHL00095 clpC Clp protease ATP 100.0 1E-110 3E-115 1037.4 86.6 793 93-951 1-803 (821)
6 KOG1051 Chaperone HSP104 and r 100.0 2E-108 4E-113 973.9 52.5 839 90-952 5-855 (898)
7 TIGR02639 ClpA ATP-dependent C 100.0 6E-103 1E-107 959.1 73.4 718 97-949 1-731 (731)
8 PRK11034 clpA ATP-dependent Cl 100.0 3E-101 7E-106 927.3 74.4 719 97-950 2-736 (758)
9 KOG0733 Nuclear AAA ATPase (VC 100.0 1.6E-40 3.4E-45 368.5 31.0 499 267-938 188-742 (802)
10 KOG0730 AAA+-type ATPase [Post 100.0 7.2E-36 1.6E-40 337.6 31.8 408 288-932 216-655 (693)
11 TIGR01243 CDC48 AAA family ATP 100.0 4.3E-32 9.4E-37 334.9 35.9 459 265-934 174-677 (733)
12 TIGR00382 clpX endopeptidase C 100.0 7.6E-30 1.6E-34 287.7 24.4 279 654-950 68-402 (413)
13 KOG0736 Peroxisome assembly fa 100.0 5.1E-28 1.1E-32 275.8 32.6 452 271-935 403-901 (953)
14 PRK05342 clpX ATP-dependent pr 100.0 1.6E-28 3.6E-33 279.0 23.5 280 655-951 63-397 (412)
15 KOG0735 AAA+-type ATPase [Post 100.0 4E-26 8.7E-31 257.9 32.7 429 289-937 430-893 (952)
16 PRK10787 DNA-binding ATP-depen 99.9 1.2E-25 2.5E-30 274.8 32.2 295 606-952 270-575 (784)
17 TIGR00763 lon ATP-dependent pr 99.9 2.6E-25 5.7E-30 275.1 35.1 268 628-942 286-567 (775)
18 COG0466 Lon ATP-dependent Lon 99.9 2.4E-24 5.1E-29 246.6 33.9 280 607-937 272-564 (782)
19 PF07724 AAA_2: AAA domain (Cd 99.9 2.7E-25 5.9E-30 224.0 11.7 155 691-861 1-171 (171)
20 KOG0741 AAA+-type ATPase [Post 99.9 1.5E-23 3.3E-28 230.1 25.1 189 282-492 248-455 (744)
21 COG2256 MGS1 ATPase related to 99.9 1.2E-23 2.6E-28 227.1 18.0 201 257-493 12-221 (436)
22 COG1219 ClpX ATP-dependent pro 99.9 5.4E-23 1.2E-27 214.1 16.1 263 655-932 53-370 (408)
23 COG0464 SpoVK ATPases of the A 99.9 4.8E-21 1E-25 227.6 31.8 427 284-934 12-467 (494)
24 COG1222 RPT1 ATP-dependent 26S 99.9 2E-22 4.3E-27 214.2 17.4 201 265-493 147-373 (406)
25 PRK05201 hslU ATP-dependent pr 99.9 2.4E-22 5.1E-27 222.9 18.1 261 655-950 7-423 (443)
26 COG2204 AtoC Response regulato 99.9 6.5E-22 1.4E-26 223.4 21.5 229 661-926 139-371 (464)
27 KOG2004 Mitochondrial ATP-depe 99.9 8E-21 1.7E-25 215.9 25.7 261 629-936 378-651 (906)
28 COG1223 Predicted ATPase (AAA+ 99.9 3.4E-21 7.5E-26 195.2 19.9 187 260-469 112-316 (368)
29 PF05496 RuvB_N: Holliday junc 99.9 6.9E-22 1.5E-26 201.4 14.1 190 256-489 11-226 (233)
30 COG3829 RocR Transcriptional r 99.9 1.6E-21 3.5E-26 218.8 18.2 230 661-926 243-476 (560)
31 TIGR00390 hslU ATP-dependent p 99.9 3.1E-21 6.8E-26 213.9 18.0 260 655-950 4-421 (441)
32 COG0542 clpA ATP-binding subun 99.9 3.6E-20 7.7E-25 219.4 26.4 181 270-468 492-733 (786)
33 COG3604 FhlA Transcriptional r 99.9 4.3E-21 9.3E-26 212.2 17.2 230 663-929 223-456 (550)
34 KOG0745 Putative ATP-dependent 99.9 9E-21 1.9E-25 204.6 17.9 222 695-931 228-510 (564)
35 KOG0738 AAA+-type ATPase [Post 99.9 1.7E-20 3.6E-25 200.3 19.5 199 265-491 208-431 (491)
36 TIGR02974 phageshock_pspF psp 99.8 7.5E-20 1.6E-24 204.2 20.3 227 665-927 1-231 (329)
37 CHL00181 cbbX CbbX; Provisiona 99.8 1.5E-19 3.3E-24 197.7 21.5 223 653-936 13-260 (287)
38 KOG0989 Replication factor C, 99.8 4.9E-20 1.1E-24 192.3 15.5 205 258-490 25-236 (346)
39 TIGR02639 ClpA ATP-dependent C 99.8 2.2E-18 4.8E-23 212.6 31.9 179 269-468 454-690 (731)
40 KOG0730 AAA+-type ATPase [Post 99.8 8.7E-20 1.9E-24 207.7 17.8 177 288-493 466-653 (693)
41 KOG0733 Nuclear AAA ATPase (VC 99.8 1.6E-19 3.5E-24 202.1 18.8 178 288-490 543-731 (802)
42 KOG2028 ATPase related to the 99.8 1.2E-19 2.6E-24 191.7 16.8 204 256-492 125-344 (554)
43 PRK14956 DNA polymerase III su 99.8 3E-19 6.5E-24 203.3 19.8 204 257-491 6-229 (484)
44 TIGR01817 nifA Nif-specific re 99.8 3.6E-19 7.9E-24 213.1 20.5 228 662-927 195-426 (534)
45 KOG0734 AAA+-type ATPase conta 99.8 2.1E-19 4.6E-24 198.0 16.5 206 264-497 299-526 (752)
46 PRK11608 pspF phage shock prot 99.8 8.5E-19 1.8E-23 196.1 20.7 230 662-927 5-238 (326)
47 CHL00195 ycf46 Ycf46; Provisio 99.8 6.3E-17 1.4E-21 187.9 36.8 169 695-930 261-445 (489)
48 CHL00095 clpC Clp protease ATP 99.8 8.5E-18 1.8E-22 209.7 31.4 181 269-467 509-759 (821)
49 TIGR02880 cbbX_cfxQ probable R 99.8 1.4E-18 2.9E-23 190.5 21.1 222 654-936 13-259 (284)
50 PRK07003 DNA polymerase III su 99.8 8.4E-19 1.8E-23 205.8 20.5 204 258-492 5-228 (830)
51 PRK05022 anaerobic nitric oxid 99.8 1.1E-18 2.5E-23 206.9 21.4 230 662-928 186-419 (509)
52 PRK15424 propionate catabolism 99.8 1E-18 2.2E-23 204.7 20.5 227 662-927 218-463 (538)
53 COG1221 PspF Transcriptional r 99.8 6E-19 1.3E-23 196.2 17.4 229 658-927 73-307 (403)
54 TIGR02329 propionate_PrpR prop 99.8 1.1E-18 2.3E-23 205.0 20.3 228 662-928 211-449 (526)
55 PRK11034 clpA ATP-dependent Cl 99.8 2.4E-17 5.1E-22 200.5 31.5 201 270-491 459-718 (758)
56 PRK12323 DNA polymerase III su 99.8 1.3E-18 2.8E-23 202.0 17.6 204 257-491 4-232 (700)
57 PRK10820 DNA-binding transcrip 99.8 2.8E-18 6E-23 203.5 20.5 230 661-927 202-435 (520)
58 PF05496 RuvB_N: Holliday junc 99.8 8.4E-19 1.8E-23 179.0 13.6 182 661-908 22-211 (233)
59 PRK13342 recombination factor 99.8 3.2E-18 7E-23 198.1 19.8 196 258-491 1-203 (413)
60 TIGR02881 spore_V_K stage V sp 99.8 3.9E-18 8.5E-23 185.5 19.2 216 663-938 6-247 (261)
61 TIGR02881 spore_V_K stage V sp 99.8 4.7E-18 1E-22 184.9 19.8 212 268-492 5-238 (261)
62 KOG0736 Peroxisome assembly fa 99.8 2.9E-18 6.2E-23 196.7 17.8 202 263-491 666-894 (953)
63 PRK14960 DNA polymerase III su 99.8 2.2E-17 4.8E-22 192.4 25.4 204 257-491 3-226 (702)
64 CHL00195 ycf46 Ycf46; Provisio 99.8 1.1E-17 2.3E-22 194.3 21.8 202 266-493 225-445 (489)
65 PRK07994 DNA polymerase III su 99.8 3.4E-17 7.5E-22 194.1 25.6 204 257-491 4-227 (647)
66 PRK14949 DNA polymerase III su 99.8 5.7E-18 1.2E-22 202.6 18.9 204 257-491 4-227 (944)
67 PRK11388 DNA-binding transcrip 99.8 9.5E-18 2.1E-22 205.3 20.8 225 662-926 324-551 (638)
68 PRK03992 proteasome-activating 99.8 2.1E-17 4.5E-22 189.2 21.4 200 266-493 128-353 (389)
69 KOG2170 ATPase of the AAA+ sup 99.8 8.4E-18 1.8E-22 175.1 15.9 251 652-924 71-340 (344)
70 KOG0739 AAA+-type ATPase [Post 99.8 3.7E-18 8E-23 176.2 12.8 185 265-472 129-335 (439)
71 PLN03025 replication factor C 99.8 1.3E-17 2.8E-22 186.9 18.2 193 258-486 2-202 (319)
72 COG1222 RPT1 ATP-dependent 26S 99.8 1E-17 2.2E-22 178.5 16.3 200 662-928 150-371 (406)
73 PRK15429 formate hydrogenlyase 99.8 2.5E-17 5.4E-22 202.8 22.0 228 663-927 376-607 (686)
74 COG2255 RuvB Holliday junction 99.8 3.7E-17 8E-22 169.2 18.9 193 259-495 16-234 (332)
75 PRK14962 DNA polymerase III su 99.8 2.8E-17 6.1E-22 190.8 20.4 203 258-491 3-225 (472)
76 PF00158 Sigma54_activat: Sigm 99.8 9.6E-18 2.1E-22 168.7 14.4 162 665-859 1-163 (168)
77 PRK13341 recombination factor 99.8 1.3E-17 2.9E-22 201.8 18.3 198 257-490 16-223 (725)
78 COG3283 TyrR Transcriptional r 99.8 3.6E-17 7.8E-22 172.9 18.8 222 662-924 203-427 (511)
79 PTZ00454 26S protease regulato 99.7 2.3E-17 5.1E-22 187.7 18.5 201 265-493 141-367 (398)
80 PRK14958 DNA polymerase III su 99.7 1.9E-17 4.2E-22 194.2 18.2 204 257-491 4-227 (509)
81 PRK14964 DNA polymerase III su 99.7 3.7E-17 8.1E-22 188.7 20.2 204 258-492 2-225 (491)
82 CHL00181 cbbX CbbX; Provisiona 99.7 4.2E-17 9.1E-22 178.5 19.5 187 270-469 24-229 (287)
83 TIGR02915 PEP_resp_reg putativ 99.7 1.4E-16 3E-21 187.6 24.2 228 663-927 139-370 (445)
84 PLN00020 ribulose bisphosphate 99.7 4.9E-17 1.1E-21 176.5 18.2 142 288-447 146-313 (413)
85 PRK14957 DNA polymerase III su 99.7 6.9E-17 1.5E-21 189.0 20.7 205 257-492 4-228 (546)
86 COG1223 Predicted ATPase (AAA+ 99.7 2.2E-17 4.7E-22 167.8 14.0 209 659-937 117-339 (368)
87 PRK10923 glnG nitrogen regulat 99.7 5.9E-17 1.3E-21 191.9 20.1 228 663-927 138-369 (469)
88 TIGR01241 FtsH_fam ATP-depende 99.7 8E-17 1.7E-21 190.9 21.1 200 265-492 51-275 (495)
89 PRK14951 DNA polymerase III su 99.7 3.2E-16 7E-21 185.7 25.8 203 258-491 5-232 (618)
90 PRK14952 DNA polymerase III su 99.7 1.1E-16 2.3E-21 189.2 21.1 202 259-491 3-226 (584)
91 PRK14961 DNA polymerase III su 99.7 9.2E-17 2E-21 182.7 19.3 204 257-491 4-227 (363)
92 PTZ00361 26 proteosome regulat 99.7 5.1E-17 1.1E-21 185.9 17.1 203 262-493 176-405 (438)
93 PRK07764 DNA polymerase III su 99.7 2.1E-16 4.5E-21 193.5 23.5 203 258-491 4-228 (824)
94 TIGR03689 pup_AAA proteasome A 99.7 8.3E-17 1.8E-21 186.4 18.7 180 261-447 174-380 (512)
95 TIGR03346 chaperone_ClpB ATP-d 99.7 1.7E-15 3.8E-20 189.6 32.0 181 269-467 565-803 (852)
96 KOG0731 AAA+-type ATPase conta 99.7 7.2E-17 1.6E-21 189.9 17.1 201 266-493 308-534 (774)
97 TIGR01243 CDC48 AAA family ATP 99.7 2E-16 4.3E-21 196.0 21.7 198 266-492 450-672 (733)
98 COG0464 SpoVK ATPases of the A 99.7 2.4E-16 5.1E-21 187.5 21.5 183 288-496 274-466 (494)
99 PRK06645 DNA polymerase III su 99.7 2.2E-16 4.7E-21 183.9 20.5 205 257-492 9-237 (507)
100 PRK14959 DNA polymerase III su 99.7 7.2E-16 1.6E-20 181.3 24.8 202 257-489 4-225 (624)
101 TIGR02880 cbbX_cfxQ probable R 99.7 3.3E-16 7.2E-21 171.7 20.7 186 270-468 23-227 (284)
102 COG2256 MGS1 ATPase related to 99.7 5.9E-17 1.3E-21 175.6 14.3 185 663-924 24-215 (436)
103 TIGR02902 spore_lonB ATP-depen 99.7 2.5E-16 5.5E-21 186.7 19.6 214 255-492 51-312 (531)
104 PRK08691 DNA polymerase III su 99.7 2.2E-16 4.7E-21 186.1 18.7 204 257-491 4-227 (709)
105 CHL00176 ftsH cell division pr 99.7 4.7E-16 1E-20 186.2 21.6 200 266-493 180-404 (638)
106 PRK14969 DNA polymerase III su 99.7 1.1E-15 2.5E-20 180.6 24.5 203 258-491 5-227 (527)
107 PRK08451 DNA polymerase III su 99.7 4.7E-16 1E-20 181.1 20.8 204 258-492 3-226 (535)
108 TIGR03345 VI_ClpV1 type VI sec 99.7 3.2E-15 6.9E-20 185.7 29.3 183 269-469 566-810 (852)
109 COG1220 HslU ATP-dependent pro 99.7 1.1E-16 2.4E-21 168.4 13.8 152 767-950 252-424 (444)
110 PRK00080 ruvB Holliday junctio 99.7 3.3E-16 7.1E-21 176.3 18.8 190 259-492 15-230 (328)
111 PRK05563 DNA polymerase III su 99.7 6.1E-16 1.3E-20 184.1 21.4 203 258-491 5-227 (559)
112 KOG0991 Replication factor C, 99.7 8.7E-17 1.9E-21 160.9 11.9 205 253-489 11-219 (333)
113 KOG0727 26S proteasome regulat 99.7 1E-16 2.3E-21 161.8 12.5 177 288-492 187-376 (408)
114 TIGR02902 spore_lonB ATP-depen 99.7 5.6E-16 1.2E-20 183.8 20.8 214 662-928 64-311 (531)
115 KOG0728 26S proteasome regulat 99.7 1.2E-16 2.6E-21 161.1 12.8 150 288-455 179-341 (404)
116 KOG0740 AAA+-type ATPase [Post 99.7 3.5E-16 7.6E-21 174.4 17.6 198 264-489 148-368 (428)
117 KOG0737 AAA+-type ATPase [Post 99.7 2.5E-16 5.3E-21 169.3 15.6 196 267-491 90-310 (386)
118 KOG0989 Replication factor C, 99.7 3.6E-16 7.8E-21 163.6 16.2 176 662-907 35-219 (346)
119 TIGR01818 ntrC nitrogen regula 99.7 6.1E-16 1.3E-20 183.1 20.2 227 664-927 135-365 (463)
120 PRK11361 acetoacetate metaboli 99.7 7.1E-16 1.5E-20 182.3 20.5 227 664-927 144-374 (457)
121 TIGR00635 ruvB Holliday juncti 99.7 1E-15 2.2E-20 171.0 20.4 182 267-492 2-209 (305)
122 KOG0735 AAA+-type ATPase [Post 99.7 5E-16 1.1E-20 176.9 17.1 195 267-489 665-882 (952)
123 PRK15115 response regulator Gl 99.7 8.3E-16 1.8E-20 180.9 19.9 227 664-927 135-365 (444)
124 PRK14965 DNA polymerase III su 99.7 8.1E-16 1.8E-20 183.9 19.9 205 258-493 5-229 (576)
125 PRK05896 DNA polymerase III su 99.7 1E-15 2.3E-20 178.9 20.3 204 257-491 4-227 (605)
126 PRK09111 DNA polymerase III su 99.7 1.3E-15 2.8E-20 181.2 21.3 204 257-491 12-240 (598)
127 PRK14956 DNA polymerase III su 99.7 3.8E-16 8.2E-21 178.2 15.1 201 661-925 16-226 (484)
128 PRK14963 DNA polymerase III su 99.7 1.1E-15 2.3E-20 179.1 19.3 201 259-490 4-223 (504)
129 PRK07133 DNA polymerase III su 99.7 1.6E-15 3.4E-20 180.8 20.8 204 257-491 6-226 (725)
130 PHA02544 44 clamp loader, smal 99.7 1.2E-15 2.6E-20 171.3 18.7 186 257-469 9-200 (316)
131 PRK12323 DNA polymerase III su 99.7 3.8E-16 8.2E-21 181.7 14.8 186 661-907 14-214 (700)
132 TIGR01242 26Sp45 26S proteasom 99.7 1.5E-15 3.3E-20 173.3 19.5 200 265-493 118-344 (364)
133 KOG0726 26S proteasome regulat 99.7 1.4E-16 3E-21 164.2 8.3 171 260-448 176-372 (440)
134 COG2255 RuvB Holliday junction 99.7 1.5E-15 3.2E-20 157.4 15.8 197 661-923 24-229 (332)
135 KOG0652 26S proteasome regulat 99.7 6.5E-16 1.4E-20 156.8 12.6 172 266-455 168-365 (424)
136 PRK07003 DNA polymerase III su 99.7 9E-16 2E-20 180.6 15.4 200 661-924 14-223 (830)
137 COG5271 MDN1 AAA ATPase contai 99.7 4.5E-14 9.7E-19 169.6 29.3 150 696-880 891-1047(4600)
138 CHL00206 ycf2 Ycf2; Provisiona 99.7 1.4E-15 3E-20 190.5 17.4 182 288-497 1628-1862(2281)
139 PRK12402 replication factor C 99.6 4.2E-15 9.1E-20 168.5 19.7 204 258-489 4-231 (337)
140 PRK04195 replication factor C 99.6 1.8E-15 3.8E-20 178.7 16.9 184 258-472 3-196 (482)
141 PRK14949 DNA polymerase III su 99.6 1.2E-15 2.6E-20 182.9 15.4 199 662-924 15-223 (944)
142 PRK06647 DNA polymerase III su 99.6 4.8E-15 1E-19 175.6 20.3 203 258-491 5-227 (563)
143 COG2812 DnaX DNA polymerase II 99.6 1.1E-15 2.5E-20 175.5 14.4 206 257-493 4-229 (515)
144 PRK14953 DNA polymerase III su 99.6 6.3E-15 1.4E-19 172.1 20.6 204 257-491 4-227 (486)
145 KOG0729 26S proteasome regulat 99.6 7.6E-16 1.6E-20 156.7 10.9 199 266-492 174-398 (435)
146 PRK06305 DNA polymerase III su 99.6 6.8E-15 1.5E-19 170.9 20.4 204 257-491 5-229 (451)
147 PRK14955 DNA polymerase III su 99.6 5.3E-15 1.1E-19 170.2 18.7 204 258-492 5-236 (397)
148 PRK14958 DNA polymerase III su 99.6 4.5E-15 9.8E-20 174.3 17.9 199 662-924 15-223 (509)
149 PRK14954 DNA polymerase III su 99.6 1.5E-14 3.1E-19 172.4 21.6 204 258-492 5-236 (620)
150 TIGR02397 dnaX_nterm DNA polym 99.6 2E-14 4.3E-19 164.2 21.4 204 257-491 2-225 (355)
151 COG5271 MDN1 AAA ATPase contai 99.6 2.3E-14 5.1E-19 171.9 22.1 152 696-881 1546-1704(4600)
152 PRK07994 DNA polymerase III su 99.6 3.5E-15 7.7E-20 177.1 15.4 186 661-907 14-209 (647)
153 PRK14960 DNA polymerase III su 99.6 3.9E-15 8.5E-20 173.8 15.2 199 662-924 14-222 (702)
154 KOG0734 AAA+-type ATPase conta 99.6 3.6E-15 7.8E-20 165.0 13.9 204 659-928 300-520 (752)
155 PRK10365 transcriptional regul 99.6 1.6E-14 3.5E-19 169.9 20.0 226 665-927 141-370 (441)
156 PRK00440 rfc replication facto 99.6 1.4E-14 3E-19 162.8 18.1 198 257-490 5-209 (319)
157 PRK14948 DNA polymerase III su 99.6 2.1E-14 4.5E-19 172.1 20.3 201 257-488 4-226 (620)
158 PRK14971 DNA polymerase III su 99.6 2.6E-14 5.5E-19 171.4 21.0 204 258-492 6-230 (614)
159 COG0465 HflB ATP-dependent Zn 99.6 6.4E-15 1.4E-19 171.1 15.2 202 266-495 147-373 (596)
160 PRK14970 DNA polymerase III su 99.6 3.7E-14 8E-19 162.4 21.2 204 257-491 5-216 (367)
161 PRK14952 DNA polymerase III su 99.6 1.5E-14 3.3E-19 171.0 18.3 201 661-925 11-223 (584)
162 PLN03025 replication factor C 99.6 2.2E-14 4.7E-19 160.8 18.6 181 663-923 13-202 (319)
163 PRK14957 DNA polymerase III su 99.6 7.2E-15 1.6E-19 172.2 15.1 202 661-925 14-224 (546)
164 PRK14951 DNA polymerase III su 99.6 9.1E-15 2E-19 173.4 15.9 199 662-924 15-228 (618)
165 PRK07764 DNA polymerase III su 99.6 1E-14 2.3E-19 178.7 16.8 203 661-926 13-226 (824)
166 PRK14964 DNA polymerase III su 99.6 9.2E-15 2E-19 169.0 15.2 201 661-925 11-221 (491)
167 COG3284 AcoR Transcriptional a 99.6 1.2E-14 2.7E-19 166.8 15.1 217 666-924 316-535 (606)
168 COG2812 DnaX DNA polymerase II 99.6 6.1E-15 1.3E-19 169.5 12.5 202 661-926 14-225 (515)
169 KOG0738 AAA+-type ATPase [Post 99.6 1.3E-14 2.7E-19 155.8 13.5 205 662-934 211-437 (491)
170 PRK14950 DNA polymerase III su 99.6 2.2E-13 4.8E-18 163.9 24.9 203 257-490 4-227 (585)
171 PRK10733 hflB ATP-dependent me 99.6 3.3E-14 7.3E-19 172.5 17.9 178 289-494 184-374 (644)
172 TIGR00763 lon ATP-dependent pr 99.6 2.6E-14 5.6E-19 177.5 17.2 179 270-469 321-535 (775)
173 TIGR02903 spore_lon_C ATP-depe 99.6 9.6E-13 2.1E-17 158.6 30.0 212 661-925 152-398 (615)
174 PRK08691 DNA polymerase III su 99.6 1.7E-14 3.6E-19 170.3 14.4 201 661-925 14-224 (709)
175 PRK14961 DNA polymerase III su 99.6 2.6E-14 5.7E-19 162.6 15.5 199 662-924 15-223 (363)
176 KOG0742 AAA+-type ATPase [Post 99.6 5.3E-14 1.2E-18 151.2 16.7 206 227-450 305-533 (630)
177 PRK00080 ruvB Holliday junctio 99.6 1.4E-13 3E-18 155.1 21.0 194 662-924 24-225 (328)
178 PF00004 AAA: ATPase family as 99.6 3E-14 6.4E-19 138.0 13.4 121 293-430 1-131 (132)
179 PRK04132 replication factor C 99.6 9.3E-12 2E-16 151.7 37.9 160 695-924 566-734 (846)
180 PRK14962 DNA polymerase III su 99.6 3.9E-14 8.4E-19 164.8 16.7 198 662-924 13-221 (472)
181 PRK14969 DNA polymerase III su 99.6 2.8E-14 6E-19 168.8 15.3 200 662-924 15-223 (527)
182 PRK07133 DNA polymerase III su 99.6 3.4E-14 7.4E-19 169.5 15.9 201 661-924 16-222 (725)
183 PRK14959 DNA polymerase III su 99.6 5.9E-14 1.3E-18 165.3 17.6 199 661-924 14-223 (624)
184 TIGR02903 spore_lon_C ATP-depe 99.6 1.3E-13 2.8E-18 166.2 20.8 212 256-491 141-401 (615)
185 PRK03992 proteasome-activating 99.6 4E-14 8.6E-19 162.3 15.6 209 660-930 128-353 (389)
186 PRK14965 DNA polymerase III su 99.6 3.5E-14 7.5E-19 170.0 15.4 201 661-924 14-223 (576)
187 PRK08084 DNA replication initi 99.5 1.7E-13 3.8E-18 146.4 19.0 179 267-472 20-203 (235)
188 TIGR00635 ruvB Holliday juncti 99.5 1.8E-13 4E-18 152.8 20.0 194 662-924 3-204 (305)
189 PRK13342 recombination factor 99.5 1.1E-13 2.5E-18 160.3 19.0 182 663-925 12-200 (413)
190 PRK05563 DNA polymerase III su 99.5 7.8E-14 1.7E-18 166.2 17.8 199 661-924 14-223 (559)
191 PRK07940 DNA polymerase III su 99.5 3.7E-14 8E-19 161.2 14.3 171 662-877 4-186 (394)
192 TIGR02640 gas_vesic_GvpN gas v 99.5 2.7E-13 5.9E-18 147.4 20.1 150 695-879 23-197 (262)
193 PF01078 Mg_chelatase: Magnesi 99.5 1.4E-14 3E-19 147.6 9.2 185 662-871 2-206 (206)
194 PRK13341 recombination factor 99.5 1.1E-13 2.4E-18 167.8 18.5 191 663-926 28-222 (725)
195 PRK05896 DNA polymerase III su 99.5 6.1E-14 1.3E-18 164.3 15.6 200 662-924 15-223 (605)
196 PRK06645 DNA polymerase III su 99.5 6.9E-14 1.5E-18 163.1 16.0 199 662-925 20-233 (507)
197 PTZ00454 26S protease regulato 99.5 1.7E-13 3.6E-18 156.3 18.5 204 661-930 143-367 (398)
198 PRK08451 DNA polymerase III su 99.5 1E-13 2.2E-18 161.7 16.1 199 662-924 13-221 (535)
199 PRK14963 DNA polymerase III su 99.5 1.3E-13 2.8E-18 161.7 16.1 199 662-925 13-221 (504)
200 PRK09111 DNA polymerase III su 99.5 9.9E-14 2.1E-18 165.2 15.3 200 661-924 22-236 (598)
201 KOG0651 26S proteasome regulat 99.5 3.9E-14 8.5E-19 148.0 10.2 161 267-445 130-316 (388)
202 TIGR02640 gas_vesic_GvpN gas v 99.5 3.1E-13 6.7E-18 146.9 17.1 163 278-472 11-216 (262)
203 PRK12402 replication factor C 99.5 3.6E-13 7.8E-18 152.7 18.1 197 662-924 14-229 (337)
204 KOG0727 26S proteasome regulat 99.5 2.6E-13 5.6E-18 137.5 14.7 196 662-925 154-372 (408)
205 PTZ00112 origin recognition co 99.5 1.1E-12 2.3E-17 154.9 21.7 211 268-491 754-988 (1164)
206 COG0466 Lon ATP-dependent Lon 99.5 2.8E-13 6.2E-18 156.4 16.6 199 270-489 324-558 (782)
207 PRK14954 DNA polymerase III su 99.5 2.1E-13 4.6E-18 162.5 15.9 199 661-924 14-231 (620)
208 PRK05201 hslU ATP-dependent pr 99.5 3.1E-13 6.6E-18 150.8 16.1 107 363-470 250-382 (443)
209 PRK07940 DNA polymerase III su 99.5 3.7E-13 8E-18 153.1 17.1 184 267-485 3-214 (394)
210 PRK14953 DNA polymerase III su 99.5 2E-13 4.2E-18 159.7 14.9 201 661-925 14-224 (486)
211 PRK06305 DNA polymerase III su 99.5 2.3E-13 5.1E-18 158.2 15.4 199 661-924 15-225 (451)
212 KOG0732 AAA+-type ATPase conta 99.5 2.1E-13 4.6E-18 164.8 15.5 204 266-491 262-488 (1080)
213 PLN00020 ribulose bisphosphate 99.5 7.3E-13 1.6E-17 144.3 17.4 158 690-907 146-327 (413)
214 PRK06893 DNA replication initi 99.5 9.8E-13 2.1E-17 140.1 17.8 179 265-471 12-196 (229)
215 PRK10787 DNA-binding ATP-depen 99.5 9.4E-13 2E-17 162.0 20.1 176 270-467 323-534 (784)
216 PTZ00361 26 proteosome regulat 99.5 2.5E-13 5.3E-18 155.8 14.0 206 662-930 182-405 (438)
217 PRK14955 DNA polymerase III su 99.5 3.5E-13 7.5E-18 155.2 15.1 198 662-924 15-231 (397)
218 TIGR00390 hslU ATP-dependent p 99.5 7.3E-13 1.6E-17 147.7 16.8 107 363-470 248-380 (441)
219 PRK13531 regulatory ATPase Rav 99.5 1.4E-12 2.9E-17 148.6 19.1 235 651-938 8-269 (498)
220 TIGR01241 FtsH_fam ATP-depende 99.5 3.5E-13 7.5E-18 160.0 14.9 168 662-882 54-240 (495)
221 TIGR03689 pup_AAA proteasome A 99.5 5.4E-13 1.2E-17 154.9 15.9 195 663-930 182-411 (512)
222 KOG2004 Mitochondrial ATP-depe 99.5 5.5E-13 1.2E-17 152.8 15.4 181 269-470 411-627 (906)
223 CHL00176 ftsH cell division pr 99.5 6.6E-13 1.4E-17 159.3 16.8 198 662-925 182-399 (638)
224 PRK06647 DNA polymerase III su 99.5 8.3E-13 1.8E-17 156.7 17.2 199 661-924 14-223 (563)
225 TIGR02928 orc1/cdc6 family rep 99.5 2.3E-12 5.1E-17 147.7 19.8 212 269-493 15-255 (365)
226 PRK05342 clpX ATP-dependent pr 99.5 1.5E-12 3.3E-17 148.7 17.9 186 271-468 73-357 (412)
227 KOG0731 AAA+-type ATPase conta 99.4 7.8E-13 1.7E-17 156.2 15.5 165 661-882 309-497 (774)
228 TIGR01242 26Sp45 26S proteasom 99.4 6.5E-13 1.4E-17 151.7 14.6 210 659-930 118-344 (364)
229 PRK14948 DNA polymerase III su 99.4 7.3E-13 1.6E-17 158.9 15.6 201 661-924 14-225 (620)
230 PHA02544 44 clamp loader, smal 99.4 3E-12 6.5E-17 143.7 19.2 176 663-910 21-201 (316)
231 CHL00081 chlI Mg-protoporyphyr 99.4 1.9E-12 4E-17 143.9 17.0 234 661-938 15-307 (350)
232 PRK09112 DNA polymerase III su 99.4 3.4E-12 7.4E-17 143.4 19.3 202 263-489 17-245 (351)
233 KOG2035 Replication factor C, 99.4 1.4E-11 3E-16 127.3 21.6 207 259-490 3-234 (351)
234 PRK14971 DNA polymerase III su 99.4 1.4E-12 3.1E-17 156.5 16.3 199 661-924 15-225 (614)
235 KOG0739 AAA+-type ATPase [Post 99.4 3.6E-13 7.8E-18 139.7 9.3 208 661-931 131-352 (439)
236 PRK04195 replication factor C 99.4 1.7E-12 3.8E-17 153.4 16.3 174 663-908 14-192 (482)
237 PRK14950 DNA polymerase III su 99.4 1.7E-12 3.7E-17 156.3 15.8 200 661-924 14-224 (585)
238 PRK13407 bchI magnesium chelat 99.4 4.7E-12 1E-16 140.6 18.0 234 662-938 7-291 (334)
239 PRK07399 DNA polymerase III su 99.4 9.5E-13 2E-17 145.9 12.4 165 661-880 2-195 (314)
240 TIGR02397 dnaX_nterm DNA polym 99.4 2.6E-12 5.6E-17 146.8 16.3 200 661-924 12-221 (355)
241 TIGR03420 DnaA_homol_Hda DnaA 99.4 2.7E-12 5.8E-17 136.8 15.4 162 695-925 40-205 (226)
242 PRK00411 cdc6 cell division co 99.4 2.9E-11 6.3E-16 140.2 25.3 209 269-493 30-263 (394)
243 TIGR00602 rad24 checkpoint pro 99.4 2.7E-12 5.8E-17 152.8 16.4 223 257-490 72-329 (637)
244 PRK05642 DNA replication initi 99.4 7.1E-12 1.5E-16 133.8 18.1 177 267-471 17-201 (234)
245 KOG0742 AAA+-type ATPase [Post 99.4 2.7E-10 5.9E-15 123.1 29.8 182 687-924 378-587 (630)
246 TIGR00368 Mg chelatase-related 99.4 4.3E-12 9.4E-17 148.3 17.2 247 663-933 192-481 (499)
247 TIGR02442 Cob-chelat-sub cobal 99.4 6.6E-12 1.4E-16 152.5 19.4 218 662-923 3-278 (633)
248 KOG0728 26S proteasome regulat 99.4 1.3E-12 2.7E-17 132.4 10.8 167 662-882 146-333 (404)
249 PHA02244 ATPase-like protein 99.4 1.2E-11 2.7E-16 136.2 19.1 169 662-869 95-263 (383)
250 COG0606 Predicted ATPase with 99.4 1.6E-12 3.4E-17 145.2 12.2 214 625-869 141-381 (490)
251 COG1224 TIP49 DNA helicase TIP 99.4 6.1E-12 1.3E-16 134.1 16.0 112 767-924 293-404 (450)
252 PRK10865 protein disaggregatio 99.4 9.3E-12 2E-16 155.5 20.6 218 222-467 531-806 (857)
253 TIGR02030 BchI-ChlI magnesium 99.4 6.6E-12 1.4E-16 139.8 17.2 234 662-938 3-294 (337)
254 PRK07471 DNA polymerase III su 99.4 9.5E-12 2.1E-16 140.5 18.4 197 263-486 13-240 (365)
255 TIGR03420 DnaA_homol_Hda DnaA 99.4 1.3E-11 2.7E-16 131.7 18.6 190 267-490 13-207 (226)
256 PRK08903 DnaA regulatory inact 99.4 1.8E-11 3.9E-16 130.6 19.6 159 695-926 44-204 (227)
257 PRK14970 DNA polymerase III su 99.4 9.2E-12 2E-16 142.7 18.4 194 662-925 16-213 (367)
258 PRK08727 hypothetical protein; 99.4 4.5E-11 9.8E-16 127.6 21.9 188 267-488 17-208 (233)
259 PRK08903 DnaA regulatory inact 99.4 1.1E-11 2.3E-16 132.3 16.9 183 265-487 14-202 (227)
260 KOG0744 AAA+-type ATPase [Post 99.4 2.6E-12 5.6E-17 135.2 11.6 148 293-448 180-343 (423)
261 PF05673 DUF815: Protein of un 99.4 2.4E-11 5.1E-16 126.4 18.6 190 266-486 24-243 (249)
262 PRK00440 rfc replication facto 99.4 1.5E-11 3.2E-16 138.3 18.8 183 663-924 17-206 (319)
263 TIGR00382 clpX endopeptidase C 99.4 1.3E-11 2.8E-16 140.2 18.1 186 271-468 79-363 (413)
264 CHL00206 ycf2 Ycf2; Provisiona 99.4 2.8E-12 6.2E-17 161.4 13.8 187 693-928 1630-1856(2281)
265 KOG2028 ATPase related to the 99.4 2.3E-12 4.9E-17 137.1 10.5 155 693-908 162-326 (554)
266 PF07728 AAA_5: AAA domain (dy 99.4 2.1E-12 4.5E-17 126.7 9.5 114 695-817 1-125 (139)
267 PRK13531 regulatory ATPase Rav 99.4 4.7E-11 1E-15 136.2 21.4 203 270-498 21-270 (498)
268 PRK08084 DNA replication initi 99.4 1.7E-11 3.6E-16 131.1 16.9 163 695-925 47-213 (235)
269 KOG0990 Replication factor C, 99.4 2E-11 4.3E-16 129.1 16.8 208 253-492 25-240 (360)
270 KOG0991 Replication factor C, 99.3 5.4E-12 1.2E-16 126.9 11.6 170 662-907 26-203 (333)
271 PRK06893 DNA replication initi 99.3 2.1E-11 4.5E-16 130.0 16.9 163 695-925 41-207 (229)
272 PF06068 TIP49: TIP49 C-termin 99.3 6.7E-12 1.4E-16 136.6 13.1 111 767-923 280-390 (398)
273 PRK09112 DNA polymerase III su 99.3 4.5E-12 9.8E-17 142.4 12.2 183 663-907 23-229 (351)
274 COG1474 CDC6 Cdc6-related prot 99.3 7.2E-11 1.6E-15 133.2 21.3 212 269-497 17-250 (366)
275 COG0714 MoxR-like ATPases [Gen 99.3 6.2E-12 1.3E-16 141.6 12.8 174 653-873 14-195 (329)
276 TIGR01650 PD_CobS cobaltochela 99.3 1.5E-11 3.2E-16 134.5 15.2 170 274-469 50-253 (327)
277 PRK07471 DNA polymerase III su 99.3 4.5E-12 9.8E-17 143.1 10.9 166 663-879 19-212 (365)
278 PRK00149 dnaA chromosomal repl 99.3 3.8E-11 8.3E-16 141.0 19.1 202 267-492 120-330 (450)
279 PRK13407 bchI magnesium chelat 99.3 1.5E-11 3.2E-16 136.7 14.5 214 265-497 4-291 (334)
280 TIGR01650 PD_CobS cobaltochela 99.3 2.3E-11 4.9E-16 133.1 15.6 157 695-879 66-232 (327)
281 PF00308 Bac_DnaA: Bacterial d 99.3 1.9E-11 4.2E-16 129.0 14.5 186 267-470 6-200 (219)
282 PRK08727 hypothetical protein; 99.3 5.6E-11 1.2E-15 127.0 18.1 164 695-927 43-210 (233)
283 TIGR00362 DnaA chromosomal rep 99.3 5.9E-11 1.3E-15 137.7 19.3 186 267-470 108-302 (405)
284 PF00004 AAA: ATPase family as 99.3 5.6E-12 1.2E-16 122.0 9.0 116 696-865 1-131 (132)
285 PRK12422 chromosomal replicati 99.3 7.1E-11 1.5E-15 137.0 19.7 186 267-471 109-306 (445)
286 PRK05564 DNA polymerase III su 99.3 1.6E-11 3.5E-16 137.3 13.9 158 662-879 3-164 (313)
287 KOG0729 26S proteasome regulat 99.3 8.9E-12 1.9E-16 127.4 10.5 196 662-924 176-393 (435)
288 PF13177 DNA_pol3_delta2: DNA 99.3 5.1E-12 1.1E-16 126.9 8.2 151 667-868 1-162 (162)
289 PRK06620 hypothetical protein; 99.3 4.5E-11 9.7E-16 125.6 15.6 136 291-472 45-183 (214)
290 KOG0652 26S proteasome regulat 99.3 1.8E-11 4E-16 124.8 12.1 194 662-924 170-387 (424)
291 PRK05564 DNA polymerase III su 99.3 5E-11 1.1E-15 133.4 16.8 174 267-469 2-181 (313)
292 COG3829 RocR Transcriptional r 99.3 1.3E-11 2.8E-16 139.7 11.9 181 266-468 242-460 (560)
293 KOG0726 26S proteasome regulat 99.3 4.8E-12 1E-16 131.0 7.6 166 661-880 183-369 (440)
294 PRK06871 DNA polymerase III su 99.3 1.3E-11 2.7E-16 136.5 11.2 164 665-879 4-178 (325)
295 PRK08058 DNA polymerase III su 99.3 1.2E-11 2.5E-16 138.9 10.7 166 662-878 4-180 (329)
296 PRK08769 DNA polymerase III su 99.3 1.3E-11 2.8E-16 136.3 10.7 164 664-878 5-183 (319)
297 PRK14088 dnaA chromosomal repl 99.3 1.2E-10 2.7E-15 135.4 19.4 188 267-471 103-298 (440)
298 PTZ00112 origin recognition co 99.3 6.5E-11 1.4E-15 140.1 17.0 214 661-924 753-984 (1164)
299 PRK07399 DNA polymerase III su 99.3 9.5E-11 2.1E-15 130.0 17.3 194 267-486 2-223 (314)
300 PRK14086 dnaA chromosomal repl 99.3 1.4E-10 3.1E-15 136.2 18.7 187 267-471 286-481 (617)
301 PRK05642 DNA replication initi 99.3 1.2E-10 2.6E-15 124.4 16.6 164 695-927 47-214 (234)
302 CHL00081 chlI Mg-protoporyphyr 99.3 9.8E-11 2.1E-15 130.3 16.4 224 257-498 4-308 (350)
303 KOG0737 AAA+-type ATPase [Post 99.3 6.5E-11 1.4E-15 127.9 14.4 210 662-937 91-319 (386)
304 TIGR00678 holB DNA polymerase 99.3 1.6E-10 3.4E-15 119.5 16.9 159 281-470 4-183 (188)
305 COG0714 MoxR-like ATPases [Gen 99.2 4.7E-11 1E-15 134.5 13.5 152 270-441 25-199 (329)
306 PRK04132 replication factor C 99.2 7.5E-11 1.6E-15 143.9 16.1 164 291-490 565-737 (846)
307 PRK10733 hflB ATP-dependent me 99.2 4.8E-11 1E-15 145.2 14.0 165 663-882 152-337 (644)
308 PRK06090 DNA polymerase III su 99.2 2.7E-11 5.9E-16 133.5 10.4 162 665-879 5-179 (319)
309 PRK07993 DNA polymerase III su 99.2 3E-11 6.6E-16 135.0 11.0 162 665-878 4-178 (334)
310 PF05621 TniB: Bacterial TniB 99.2 4E-10 8.7E-15 121.0 18.7 198 288-495 59-272 (302)
311 TIGR02030 BchI-ChlI magnesium 99.2 2.9E-10 6.2E-15 126.8 17.9 213 268-498 3-295 (337)
312 COG3604 FhlA Transcriptional r 99.2 4.7E-11 1E-15 133.3 11.5 183 267-467 221-436 (550)
313 PTZ00111 DNA replication licen 99.2 2.3E-10 5.1E-15 138.6 18.4 192 652-875 439-652 (915)
314 smart00350 MCM minichromosome 99.2 2.1E-10 4.6E-15 136.1 17.8 223 653-907 193-449 (509)
315 KOG2035 Replication factor C, 99.2 1.8E-10 3.8E-15 119.2 14.7 173 693-923 34-227 (351)
316 COG1221 PspF Transcriptional r 99.2 5E-11 1.1E-15 133.3 11.6 204 265-493 74-310 (403)
317 TIGR02928 orc1/cdc6 family rep 99.2 2.5E-10 5.5E-15 130.9 17.9 219 663-926 15-251 (365)
318 PF14532 Sigma54_activ_2: Sigm 99.2 1.7E-11 3.6E-16 120.1 6.9 137 666-867 1-138 (138)
319 TIGR00678 holB DNA polymerase 99.2 1.5E-10 3.2E-15 119.8 14.1 155 694-907 15-180 (188)
320 COG1219 ClpX ATP-dependent pro 99.2 2.4E-10 5.2E-15 120.4 15.5 169 289-468 96-346 (408)
321 PRK09087 hypothetical protein; 99.2 3.8E-10 8.2E-15 119.6 17.4 166 267-472 19-189 (226)
322 PRK05707 DNA polymerase III su 99.2 3.7E-11 8.1E-16 133.9 10.1 141 695-879 24-177 (328)
323 TIGR02974 phageshock_pspF psp 99.2 2.2E-10 4.8E-15 128.3 16.3 179 271-468 1-214 (329)
324 COG2204 AtoC Response regulato 99.2 8.9E-11 1.9E-15 133.6 13.1 188 266-469 138-356 (464)
325 TIGR02031 BchD-ChlD magnesium 99.2 2.4E-10 5.2E-15 137.4 17.2 208 693-937 16-242 (589)
326 PRK09862 putative ATP-dependen 99.2 1.3E-10 2.9E-15 135.2 14.4 178 663-870 191-391 (506)
327 PF07726 AAA_3: ATPase family 99.2 3.4E-11 7.3E-16 112.8 7.4 107 695-816 1-113 (131)
328 COG1220 HslU ATP-dependent pro 99.2 3.2E-10 6.9E-15 120.3 15.5 106 363-469 251-382 (444)
329 COG0465 HflB ATP-dependent Zn 99.2 9.9E-11 2.1E-15 136.5 12.7 168 661-882 148-335 (596)
330 TIGR00362 DnaA chromosomal rep 99.2 1.9E-10 4.2E-15 133.4 15.3 173 695-927 138-316 (405)
331 PRK11608 pspF phage shock prot 99.2 2.4E-10 5.2E-15 128.2 15.4 182 267-468 4-221 (326)
332 COG0470 HolB ATPase involved i 99.2 5E-10 1.1E-14 126.2 18.1 150 270-436 2-172 (325)
333 KOG1969 DNA replication checkp 99.2 1.5E-10 3.2E-15 133.8 13.5 184 256-472 258-504 (877)
334 PF00308 Bac_DnaA: Bacterial d 99.2 1.3E-10 2.8E-15 122.7 12.1 173 695-927 36-214 (219)
335 PRK08058 DNA polymerase III su 99.2 2.2E-10 4.8E-15 128.6 14.7 155 268-442 4-179 (329)
336 KOG0743 AAA+-type ATPase [Post 99.2 2.1E-10 4.6E-15 127.4 13.3 153 264-442 196-380 (457)
337 PRK11331 5-methylcytosine-spec 99.2 1.5E-10 3.3E-15 131.0 12.4 152 268-432 174-358 (459)
338 PRK12422 chromosomal replicati 99.2 9.5E-10 2.1E-14 127.6 19.2 172 695-926 143-318 (445)
339 COG0470 HolB ATPase involved i 99.2 1.9E-10 4.1E-15 129.6 13.2 143 664-869 2-170 (325)
340 PRK14087 dnaA chromosomal repl 99.2 1.1E-09 2.4E-14 127.6 19.7 202 266-489 112-324 (450)
341 PRK11331 5-methylcytosine-spec 99.2 8.9E-10 1.9E-14 124.9 18.2 170 663-872 175-364 (459)
342 TIGR01817 nifA Nif-specific re 99.2 3E-10 6.6E-15 136.4 15.3 189 264-468 191-409 (534)
343 PRK06964 DNA polymerase III su 99.2 1.2E-10 2.6E-15 129.7 10.9 160 666-878 4-202 (342)
344 KOG1942 DNA helicase, TBP-inte 99.2 2.7E-10 5.8E-15 118.3 12.4 113 767-924 298-410 (456)
345 TIGR00764 lon_rel lon-related 99.2 5E-10 1.1E-14 134.7 16.8 135 758-925 210-367 (608)
346 PRK00149 dnaA chromosomal repl 99.1 4.4E-10 9.6E-15 132.0 15.9 173 694-926 149-327 (450)
347 COG4650 RtcR Sigma54-dependent 99.1 1.5E-10 3.2E-15 120.1 10.1 226 660-924 181-421 (531)
348 PRK00411 cdc6 cell division co 99.1 1E-09 2.2E-14 127.3 18.5 196 663-908 30-241 (394)
349 KOG0745 Putative ATP-dependent 99.1 7.4E-10 1.6E-14 121.0 15.6 170 289-469 225-488 (564)
350 PF07724 AAA_2: AAA domain (Cd 99.1 9.2E-11 2E-15 118.5 8.2 110 289-409 2-131 (171)
351 PRK13765 ATP-dependent proteas 99.1 5.1E-10 1.1E-14 134.0 15.8 119 759-907 220-351 (637)
352 smart00763 AAA_PrkA PrkA AAA d 99.1 1.1E-09 2.4E-14 121.2 16.8 210 664-907 52-348 (361)
353 PF01078 Mg_chelatase: Magnesi 99.1 5.3E-11 1.1E-15 121.5 5.8 134 268-412 2-163 (206)
354 KOG0740 AAA+-type ATPase [Post 99.1 3.6E-10 7.9E-15 126.7 12.7 210 657-931 147-373 (428)
355 PHA02244 ATPase-like protein 99.1 4E-10 8.7E-15 124.4 12.8 138 271-434 98-263 (383)
356 cd00009 AAA The AAA+ (ATPases 99.1 4.6E-10 1E-14 110.0 12.0 150 667-866 2-151 (151)
357 KOG0744 AAA+-type ATPase [Post 99.1 1.3E-10 2.8E-15 122.6 8.3 143 696-884 180-344 (423)
358 cd00009 AAA The AAA+ (ATPases 99.1 7.6E-10 1.6E-14 108.4 13.1 144 272-429 1-149 (151)
359 PRK15429 formate hydrogenlyase 99.1 1.8E-09 4E-14 133.4 19.5 187 266-468 373-590 (686)
360 PRK14087 dnaA chromosomal repl 99.1 1.1E-09 2.4E-14 127.5 16.5 176 695-927 143-325 (450)
361 PF13177 DNA_pol3_delta2: DNA 99.1 1.6E-09 3.4E-14 109.0 15.2 143 273-433 1-162 (162)
362 TIGR02329 propionate_PrpR prop 99.1 1.2E-09 2.7E-14 128.8 16.7 179 266-463 209-419 (526)
363 PRK14086 dnaA chromosomal repl 99.1 1.6E-09 3.5E-14 127.5 17.3 172 695-926 316-493 (617)
364 PRK08769 DNA polymerase III su 99.1 4E-09 8.7E-14 116.6 19.3 182 275-485 10-209 (319)
365 PRK05707 DNA polymerase III su 99.1 2.4E-09 5.2E-14 119.5 17.7 167 288-486 19-205 (328)
366 PRK14088 dnaA chromosomal repl 99.1 9.7E-10 2.1E-14 128.0 15.0 173 695-926 132-310 (440)
367 PRK05022 anaerobic nitric oxid 99.1 1.8E-09 3.8E-14 128.7 17.5 186 267-468 185-401 (509)
368 PRK15424 propionate catabolism 99.1 1.7E-09 3.6E-14 127.6 16.8 185 266-462 216-433 (538)
369 PF10431 ClpB_D2-small: C-term 99.1 1.5E-10 3.2E-15 102.1 6.0 81 867-947 1-81 (81)
370 KOG0743 AAA+-type ATPase [Post 99.1 5.3E-10 1.1E-14 124.3 11.7 153 695-907 237-416 (457)
371 COG1224 TIP49 DNA helicase TIP 99.1 2.3E-09 5E-14 114.8 15.7 116 363-495 292-415 (450)
372 TIGR02442 Cob-chelat-sub cobal 99.1 2.6E-09 5.7E-14 130.0 18.4 213 268-497 3-289 (633)
373 PRK10820 DNA-binding transcrip 99.1 3.4E-09 7.4E-14 126.3 18.6 183 265-467 200-417 (520)
374 PRK11388 DNA-binding transcrip 99.1 1.7E-09 3.8E-14 132.8 16.0 180 266-469 322-536 (638)
375 KOG0732 AAA+-type ATPase conta 99.1 9.9E-10 2.1E-14 133.6 13.4 206 662-929 264-489 (1080)
376 COG1474 CDC6 Cdc6-related prot 99.0 2.9E-09 6.3E-14 120.2 16.2 213 663-924 17-240 (366)
377 PF06068 TIP49: TIP49 C-termin 99.0 5.2E-09 1.1E-13 114.4 17.4 109 363-488 279-395 (398)
378 PF00158 Sigma54_activat: Sigm 99.0 2.3E-09 4.9E-14 108.1 13.6 139 271-428 1-166 (168)
379 PF05673 DUF815: Protein of un 99.0 5E-09 1.1E-13 109.3 16.2 179 663-882 27-209 (249)
380 PRK07993 DNA polymerase III su 99.0 8.9E-09 1.9E-13 115.2 19.4 178 276-486 9-206 (334)
381 PF07728 AAA_5: AAA domain (dy 99.0 6.2E-11 1.4E-15 116.2 1.7 111 292-424 1-139 (139)
382 COG1239 ChlI Mg-chelatase subu 99.0 2.5E-09 5.5E-14 118.4 13.8 210 659-910 13-282 (423)
383 PRK05917 DNA polymerase III su 99.0 2.2E-09 4.7E-14 116.3 12.6 145 670-869 4-156 (290)
384 PF01637 Arch_ATPase: Archaeal 99.0 8.5E-10 1.8E-14 117.7 9.3 191 271-471 1-227 (234)
385 PRK08699 DNA polymerase III su 99.0 1.2E-09 2.5E-14 121.9 10.5 160 666-878 4-183 (325)
386 COG0593 DnaA ATPase involved i 99.0 1.4E-08 3E-13 114.3 19.1 164 290-472 113-280 (408)
387 PRK07276 DNA polymerase III su 99.0 1.4E-09 2.9E-14 118.3 10.7 157 667-877 6-172 (290)
388 PRK06620 hypothetical protein; 99.0 4.8E-09 1E-13 110.3 14.2 145 695-925 46-193 (214)
389 COG2607 Predicted ATPase (AAA+ 99.0 2.2E-08 4.7E-13 102.3 18.1 192 267-489 58-278 (287)
390 PRK06871 DNA polymerase III su 99.0 1.7E-08 3.6E-13 111.9 18.7 148 277-443 10-177 (325)
391 PF07726 AAA_3: ATPase family 99.0 4.8E-11 1E-15 111.7 -1.1 108 292-425 1-130 (131)
392 KOG0651 26S proteasome regulat 99.0 1.5E-09 3.3E-14 114.1 9.6 133 662-817 131-282 (388)
393 TIGR00764 lon_rel lon-related 99.0 1E-08 2.2E-13 123.6 17.4 120 364-494 219-373 (608)
394 PRK09087 hypothetical protein; 99.0 1.2E-08 2.6E-13 108.2 15.8 152 695-925 46-199 (226)
395 TIGR03015 pepcterm_ATPase puta 99.0 7.6E-08 1.7E-12 105.5 22.4 183 289-493 42-247 (269)
396 smart00350 MCM minichromosome 99.0 5.5E-09 1.2E-13 124.2 14.1 204 269-492 203-453 (509)
397 PRK06964 DNA polymerase III su 98.9 1.7E-08 3.7E-13 112.6 16.8 151 279-443 11-202 (342)
398 PF06309 Torsin: Torsin; Inte 98.9 1.8E-09 3.8E-14 101.1 7.1 108 653-771 15-127 (127)
399 KOG2680 DNA helicase TIP49, TB 98.9 8.9E-09 1.9E-13 107.5 12.9 112 767-924 290-401 (454)
400 smart00763 AAA_PrkA PrkA AAA d 98.9 1.8E-08 3.8E-13 111.7 15.4 95 364-467 238-348 (361)
401 KOG1051 Chaperone HSP104 and r 98.9 8.1E-09 1.7E-13 125.3 13.7 121 270-408 563-711 (898)
402 KOG0741 AAA+-type ATPase [Post 98.9 2.2E-09 4.8E-14 119.7 7.8 177 695-932 258-458 (744)
403 TIGR02915 PEP_resp_reg putativ 98.9 7E-08 1.5E-12 113.8 19.9 186 267-468 137-353 (445)
404 PRK06090 DNA polymerase III su 98.9 4.7E-08 1E-12 108.1 16.8 149 276-442 10-177 (319)
405 COG1239 ChlI Mg-chelatase subu 98.9 5.7E-08 1.2E-12 107.8 17.2 159 268-443 16-230 (423)
406 TIGR00368 Mg chelatase-related 98.8 1.2E-08 2.6E-13 119.6 11.7 154 267-436 190-395 (499)
407 PF12775 AAA_7: P-loop contain 98.8 7E-09 1.5E-13 112.9 9.0 150 280-449 24-197 (272)
408 KOG0990 Replication factor C, 98.8 6.2E-09 1.3E-13 110.5 8.1 155 663-882 41-205 (360)
409 PRK05818 DNA polymerase III su 98.8 1E-08 2.2E-13 108.6 9.5 128 695-868 9-148 (261)
410 PTZ00111 DNA replication licen 98.8 4.1E-08 9E-13 119.5 15.6 163 269-447 450-659 (915)
411 COG0606 Predicted ATPase with 98.8 1.4E-09 3E-14 122.0 2.7 123 267-409 177-337 (490)
412 PF02861 Clp_N: Clp amino term 98.8 6.3E-09 1.4E-13 83.6 5.4 53 108-160 1-53 (53)
413 TIGR02031 BchD-ChlD magnesium 98.8 1.4E-07 3E-12 113.7 18.7 187 289-498 15-244 (589)
414 COG1241 MCM2 Predicted ATPase 98.8 4.6E-08 1E-12 116.4 13.4 251 655-939 278-580 (682)
415 PRK13765 ATP-dependent proteas 98.8 6.9E-08 1.5E-12 115.9 14.6 121 364-495 228-383 (637)
416 PRK12377 putative replication 98.8 2.6E-08 5.6E-13 106.5 9.6 107 695-821 103-211 (248)
417 PRK10923 glnG nitrogen regulat 98.8 1.1E-07 2.3E-12 113.0 15.8 178 267-468 136-352 (469)
418 TIGR03015 pepcterm_ATPase puta 98.7 3.4E-07 7.5E-12 100.3 18.2 190 695-929 45-246 (269)
419 KOG0478 DNA replication licens 98.7 1.1E-07 2.4E-12 109.6 14.5 225 653-907 419-672 (804)
420 COG0593 DnaA ATPase involved i 98.7 2.4E-07 5.1E-12 104.5 16.5 172 695-927 115-292 (408)
421 PRK08699 DNA polymerase III su 98.7 2.3E-07 5E-12 103.6 16.1 151 278-442 10-182 (325)
422 KOG1942 DNA helicase, TBP-inte 98.7 2.6E-07 5.7E-12 96.4 15.1 117 363-496 297-422 (456)
423 PRK13406 bchD magnesium chelat 98.7 1.4E-07 3E-12 112.5 14.9 194 692-923 24-224 (584)
424 PF13173 AAA_14: AAA domain 98.7 8.4E-08 1.8E-12 92.6 10.2 123 291-436 3-126 (128)
425 smart00382 AAA ATPases associa 98.7 9.2E-08 2E-12 92.7 10.4 125 290-430 2-145 (148)
426 KOG1969 DNA replication checkp 98.7 1.7E-07 3.8E-12 108.9 14.1 151 696-907 329-499 (877)
427 PF12775 AAA_7: P-loop contain 98.7 1.2E-07 2.5E-12 103.4 12.0 156 695-884 35-197 (272)
428 PRK08116 hypothetical protein; 98.7 6.5E-08 1.4E-12 105.3 10.0 109 695-821 116-226 (268)
429 PRK07132 DNA polymerase III su 98.7 1.6E-07 3.4E-12 103.3 12.9 152 670-878 3-160 (299)
430 PRK12377 putative replication 98.7 5.1E-08 1.1E-12 104.2 8.8 115 289-424 100-222 (248)
431 PRK15115 response regulator Gl 98.7 3.1E-07 6.7E-12 108.3 16.2 175 270-468 135-348 (444)
432 PF00493 MCM: MCM2/3/5 family 98.7 2E-08 4.4E-13 112.8 5.6 254 653-937 14-312 (331)
433 PF14532 Sigma54_activ_2: Sigm 98.7 2.2E-08 4.8E-13 98.0 5.1 130 272-433 1-137 (138)
434 TIGR00602 rad24 checkpoint pro 98.6 2.7E-07 5.8E-12 110.6 14.3 52 662-717 83-134 (637)
435 TIGR01818 ntrC nitrogen regula 98.6 2.9E-07 6.3E-12 109.2 14.2 183 269-467 134-347 (463)
436 PRK11361 acetoacetate metaboli 98.6 3.6E-07 7.9E-12 108.2 15.1 177 268-468 142-357 (457)
437 PRK08116 hypothetical protein; 98.6 2.7E-07 5.9E-12 100.5 12.6 127 291-433 115-250 (268)
438 KOG0480 DNA replication licens 98.6 4.6E-07 9.9E-12 103.9 14.1 254 651-937 333-629 (764)
439 PRK05917 DNA polymerase III su 98.6 1.6E-06 3.4E-11 94.3 17.1 137 278-432 6-154 (290)
440 PRK09862 putative ATP-dependen 98.6 6E-08 1.3E-12 113.2 6.1 149 267-435 189-391 (506)
441 COG2607 Predicted ATPase (AAA+ 98.6 4.3E-06 9.3E-11 85.8 18.2 177 663-882 60-241 (287)
442 PRK06835 DNA replication prote 98.5 2.8E-07 6E-12 102.8 9.7 109 694-821 184-294 (329)
443 PF01695 IstB_IS21: IstB-like 98.5 1E-07 2.3E-12 97.2 5.8 107 695-823 49-157 (178)
444 KOG2227 Pre-initiation complex 98.5 6.7E-07 1.5E-11 99.7 12.3 218 659-925 146-375 (529)
445 PRK07952 DNA replication prote 98.5 4.9E-07 1.1E-11 96.5 10.3 114 291-424 100-221 (244)
446 PRK10365 transcriptional regul 98.5 2.8E-06 6.2E-11 100.1 17.0 183 270-468 140-353 (441)
447 PRK07132 DNA polymerase III su 98.5 7.4E-06 1.6E-10 90.1 18.6 146 277-442 4-159 (299)
448 smart00382 AAA ATPases associa 98.4 4.2E-07 9.2E-12 88.0 7.6 118 695-815 4-125 (148)
449 PRK08181 transposase; Validate 98.4 3.8E-07 8.3E-12 98.8 7.9 103 289-408 105-209 (269)
450 PRK06526 transposase; Provisio 98.4 1.8E-07 3.9E-12 100.8 5.1 106 695-823 100-208 (254)
451 PF03215 Rad17: Rad17 cell cyc 98.4 2.6E-06 5.7E-11 100.4 15.0 214 256-490 6-269 (519)
452 PRK07952 DNA replication prote 98.4 4.9E-07 1.1E-11 96.5 7.9 109 695-822 101-211 (244)
453 PRK15455 PrkA family serine pr 98.4 3.3E-06 7.1E-11 98.0 15.0 191 661-881 74-347 (644)
454 PF13401 AAA_22: AAA domain; P 98.4 7.3E-07 1.6E-11 86.1 8.2 109 289-407 3-125 (131)
455 PRK08181 transposase; Validate 98.4 1.1E-06 2.4E-11 95.2 10.0 107 695-823 108-216 (269)
456 PRK07276 DNA polymerase III su 98.4 5.3E-06 1.1E-10 90.5 15.1 146 274-442 7-172 (290)
457 PRK06835 DNA replication prote 98.4 1.2E-06 2.6E-11 97.8 9.8 119 289-424 182-305 (329)
458 COG1484 DnaC DNA replication p 98.4 1E-06 2.2E-11 95.0 8.7 103 289-408 104-209 (254)
459 PF01695 IstB_IS21: IstB-like 98.4 3.3E-07 7.2E-12 93.5 4.5 104 288-409 45-151 (178)
460 PF12774 AAA_6: Hydrolytic ATP 98.3 5.5E-06 1.2E-10 87.9 13.5 100 696-816 35-144 (231)
461 COG3283 TyrR Transcriptional r 98.3 1.2E-05 2.7E-10 86.5 15.7 183 266-467 201-412 (511)
462 PF13173 AAA_14: AAA domain 98.3 1.5E-06 3.3E-11 83.8 8.2 121 695-872 4-127 (128)
463 PRK06526 transposase; Provisio 98.3 9.1E-07 2E-11 95.4 7.2 100 289-408 97-201 (254)
464 KOG1808 AAA ATPase containing 98.3 1.4E-05 3E-10 103.5 18.6 133 289-442 439-596 (1856)
465 COG1484 DnaC DNA replication p 98.3 1.8E-06 3.9E-11 93.2 9.2 108 695-823 107-216 (254)
466 PHA00729 NTP-binding motif con 98.3 2.9E-06 6.4E-11 88.5 10.3 127 279-443 6-138 (226)
467 PF05729 NACHT: NACHT domain 98.3 9.2E-06 2E-10 81.6 13.3 144 293-445 3-163 (166)
468 PRK15455 PrkA family serine pr 98.3 8E-06 1.7E-10 94.9 13.9 52 265-316 72-129 (644)
469 KOG2227 Pre-initiation complex 98.3 2.8E-05 6.1E-10 87.1 17.6 175 258-447 142-340 (529)
470 PRK06581 DNA polymerase III su 98.3 6.2E-06 1.3E-10 85.7 11.6 133 695-879 17-160 (263)
471 PRK13406 bchD magnesium chelat 98.3 2.1E-05 4.6E-10 94.1 17.8 184 289-501 24-239 (584)
472 PRK09183 transposase/IS protei 98.3 1.2E-06 2.7E-11 94.9 6.5 106 695-823 104-213 (259)
473 PRK05818 DNA polymerase III su 98.3 1.1E-05 2.3E-10 85.9 13.3 125 289-433 6-148 (261)
474 PRK06921 hypothetical protein; 98.2 3.1E-06 6.7E-11 92.0 9.2 122 289-424 116-240 (266)
475 KOG0481 DNA replication licens 98.2 7.4E-06 1.6E-10 91.7 11.9 189 655-870 323-517 (729)
476 KOG0482 DNA replication licens 98.2 7.3E-06 1.6E-10 91.7 11.7 253 654-941 333-628 (721)
477 COG3284 AcoR Transcriptional a 98.2 3.2E-06 7E-11 98.3 8.7 174 272-467 316-520 (606)
478 PRK06921 hypothetical protein; 98.2 1.7E-06 3.7E-11 94.1 6.1 105 694-821 118-230 (266)
479 KOG3595 Dyneins, heavy chain [ 98.2 0.00011 2.4E-09 97.1 23.6 142 291-448 128-289 (1395)
480 PF13191 AAA_16: AAA ATPase do 98.2 2.8E-06 6.1E-11 87.2 7.1 47 271-317 2-51 (185)
481 KOG1970 Checkpoint RAD17-RFC c 98.2 3.5E-05 7.6E-10 87.8 16.1 203 256-472 69-309 (634)
482 COG5245 DYN1 Dynein, heavy cha 98.2 8.5E-05 1.8E-09 91.9 20.0 140 289-447 1493-1660(3164)
483 KOG2680 DNA helicase TIP49, TB 98.2 2.3E-05 5.1E-10 82.5 13.0 112 363-491 289-408 (454)
484 PF13401 AAA_22: AAA domain; P 98.2 2.2E-06 4.8E-11 82.7 5.2 97 695-791 6-114 (131)
485 COG3854 SpoIIIAA ncharacterize 98.1 2.1E-05 4.5E-10 80.2 12.0 115 281-410 128-255 (308)
486 PF12774 AAA_6: Hydrolytic ATP 98.1 1.8E-05 3.9E-10 84.0 12.1 132 279-441 23-176 (231)
487 PF05621 TniB: Bacterial TniB 98.1 0.00012 2.7E-09 79.2 18.3 229 658-937 29-273 (302)
488 PF00931 NB-ARC: NB-ARC domain 98.1 2E-05 4.4E-10 87.1 12.8 172 274-469 1-193 (287)
489 PRK08939 primosomal protein Dn 98.1 8.1E-06 1.8E-10 90.5 9.4 109 695-824 158-269 (306)
490 PF01637 Arch_ATPase: Archaeal 98.1 3.9E-06 8.4E-11 89.4 6.2 190 666-907 2-223 (234)
491 PF02861 Clp_N: Clp amino term 98.1 2.9E-06 6.2E-11 68.1 3.6 52 185-236 1-53 (53)
492 PRK08939 primosomal protein Dn 98.1 5.2E-06 1.1E-10 92.0 6.7 104 289-408 155-261 (306)
493 KOG1514 Origin recognition com 98.1 8.2E-05 1.8E-09 87.2 16.5 216 661-929 394-628 (767)
494 KOG1514 Origin recognition com 98.1 0.00014 3E-09 85.3 18.4 208 270-492 397-628 (767)
495 KOG0478 DNA replication licens 98.1 4.3E-05 9.4E-10 88.8 14.0 183 271-472 431-657 (804)
496 KOG0477 DNA replication licens 98.1 4.3E-06 9.2E-11 95.6 5.8 145 657-816 443-599 (854)
497 COG1618 Predicted nucleotide k 98.1 6.3E-05 1.4E-09 73.0 12.8 143 289-447 4-174 (179)
498 PRK09183 transposase/IS protei 98.1 9.9E-06 2.2E-10 87.9 8.4 127 289-433 101-241 (259)
499 PF00910 RNA_helicase: RNA hel 98.0 6.4E-06 1.4E-10 76.7 5.7 94 696-815 1-107 (107)
500 PF03215 Rad17: Rad17 cell cyc 98.0 0.00018 3.9E-09 85.1 19.1 69 849-924 194-263 (519)
No 1
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-135 Score=1189.19 Aligned_cols=773 Identities=58% Similarity=0.940 Sum_probs=718.9
Q ss_pred cccHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhcCCCcHHHHHHHHcCCChHHHHHHHHHhhccCCCCCCCCCCCccC
Q 002012 96 EFTEKAWEGIVGAVDAARVNNQQVVETEHLMKALLEQKDGLARRILTKAGQDNTKVLQATEDFISKQPKVTGATSGPIVG 175 (982)
Q Consensus 96 ~ft~~a~~~l~~A~~~A~~~~~~~v~~eHlLlaLl~~~~~~~~~iL~~~gv~~~~l~~~~~~~~~~~~~~~~~~~~~~~s 175 (982)
+||++++++|..|+.+|+.++|++|++||||++|+.++++. .+|..+|++++.++..+...+++.|...+. +.++
T Consensus 1 ~~~~~~~~~l~~a~~~a~~~~h~~~~~eHll~~ll~~~~~~--~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~---~~~s 75 (786)
T COG0542 1 KLTERAQKALELAQELARMRRHEYVTPEHLLLALLDQPKGD--ELLNLCGIDLDKLRQELEEFIDKLPKVLGS---PYLS 75 (786)
T ss_pred CcCHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHcCCchH--HHHHHcCCCHHHHHHHHHHHHhccCCCCCC---CCCC
Confidence 59999999999999999999999999999999999999887 899999999999999999999999876553 7889
Q ss_pred hhhHHHHHHHHHHHHHcCCCccCHHHHHHHHh-cCCcccccccccccCCHHHHHHHHHhhhcccccccCCCCchhHHHHH
Q 002012 176 SNFGLLLSNAQRIKKEMEDDFVSVEHLLLAFL-SDDRFGRLLFNDIRLNEKDLKDAVKAVRGHQRVTDQNPEGKYQALEK 254 (982)
Q Consensus 176 ~~~~~vl~~A~~~a~~~g~~~I~~ehLllall-~~~~~a~~lL~~~gi~~~~l~~~i~~~~~~~~~~~~~~~~~~~~l~~ 254 (982)
+.+.++++.|+.+|..++++||+++|||+|++ +..+.+..+|...+++...+.+.+..+.++....+..++.....|++
T Consensus 76 ~~~~~~~~~a~~~a~~~~~~~v~~~~llla~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 155 (786)
T COG0542 76 PRLKRVLERAWLLAQSLGDEYVSTEHLLLALLNEPESVAAYILKKLGVTRKDVEELIEELRGGNEVDSKNAEEDQDALEK 155 (786)
T ss_pred HHHHHHHHHHHHHHHhccCccccHHHHHHHHhcccchHHHHHHHhccCCHHHHHHHHHHHhcccccCCcccccchhhHHH
Confidence 99999999999999999999999999999999 55678889999999999999998999988876677777777789999
Q ss_pred hhhhhHHHhhcCCCCCcccchHHHHHHHHHhccCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecc
Q 002012 255 YGNDLTELARSGKLDPVIGRDDEIRRCIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMA 334 (982)
Q Consensus 255 ~~~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~ 334 (982)
|+.+|++.++.+++||+|||++||++++++|+|++++|++|+|+||||||+++++||+++.+++||+.|.+.+++.+|++
T Consensus 156 y~~dlt~~Ar~gklDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g 235 (786)
T COG0542 156 YTRDLTELAREGKLDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLG 235 (786)
T ss_pred HhhhhHHHHhcCCCCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCc-hhhHHHHHHhhhcCCCeEEEEecCchhHhhh
Q 002012 335 SLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSG-AMDASNMLKPMLGRGELRCIGATTLNEYRNY 413 (982)
Q Consensus 335 ~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~-~~~~~~~L~~~le~g~i~vI~at~~~~~~~~ 413 (982)
++.+|++|+|+||++++.+++++...+ ++||||||||++.++|.+.| +.|+.|+|+|+|++|.+.||||||..+|+++
T Consensus 236 ~LvAGakyRGeFEeRlk~vl~ev~~~~-~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~~IGATT~~EYRk~ 314 (786)
T COG0542 236 SLVAGAKYRGEFEERLKAVLKEVEKSK-NVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGATTLDEYRKY 314 (786)
T ss_pred HHhccccccCcHHHHHHHHHHHHhcCC-CeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeEEEEeccHHHHHHH
Confidence 999999999999999999999999866 89999999999999998866 6999999999999999999999999999999
Q ss_pred hhcChHHHhccceEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCCcchhhHHHHHHHHHhh
Q 002012 414 IEKDPALERRFQQVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLPDKAIDLVDEAAAKLK 493 (982)
Q Consensus 414 ~~~d~al~rRf~~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~p~~a~~lld~a~~~~~ 493 (982)
++.|+||.|||+.|.+.+|+.++...||+++.++|+.||+|.|+|+++.+++.+|.|||++|++||+|++|+|+|+++++
T Consensus 315 iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~LPDKAIDLiDeA~a~~~ 394 (786)
T COG0542 315 IEKDAALERRFQKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDRFLPDKAIDLLDEAGARVR 394 (786)
T ss_pred hhhchHHHhcCceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCccchHHHHHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002012 494 MEITSKPIELDEIDRAVLKLEMEKLSLKNDTDKASKERLSKLEHDLNSLKQKQKELNDQWSREKDLMSRIRSIKEEIDRV 573 (982)
Q Consensus 494 ~~~~~~~~~l~~~~~~~~~~~~e~~~l~~~~~~~~~~~l~~~~~e~~~l~~~~~~l~~~~~~e~~~~~~~~~~~~~~~~~ 573 (982)
++.. .|..++.+++++.++++|...+..+.+. .++..+..+..+++
T Consensus 395 l~~~-~p~~l~~~~~~~~~l~~e~~~~~~e~~~----------------------------~~k~~~~~~~~~~~----- 440 (786)
T COG0542 395 LEID-KPEELDELERELAQLEIEKEALEREQDE----------------------------KEKKLIDEIIKLKE----- 440 (786)
T ss_pred hccc-CCcchhHHHHHHHHHHHHHHHHhhhhhH----------------------------HHHHHHHHHHHHhh-----
Confidence 9999 9999999999999999988777766430 01111111111110
Q ss_pred HHHHHHHHhhhcHHHHHHhhhcchHHHHHHHHHHHHhHHHHHhcCCccccccCCHhHHHHHHHHhhCCCCcccchhHHHH
Q 002012 574 NLEMEAAERDYDLNRAAELKYGTMISLQRQLEEAEKNLSEFQKSGHSLLREEVTDLDIAEIVSKWTGIPLSSLQQSEREK 653 (982)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~gi~~~~~~~~~~~~ 653 (982)
+.++.+++++.. .|++++|+++++.|||||+.++...+.+.
T Consensus 441 ---------------------~~~~~~~~~~~~------------------~v~~~~Ia~vv~~~TgIPv~~l~~~e~~k 481 (786)
T COG0542 441 ---------------------GRIPELEKELEA------------------EVDEDDIAEVVARWTGIPVAKLLEDEKEK 481 (786)
T ss_pred ---------------------hhhhhHHHHHhh------------------ccCHHHHHHHHHHHHCCChhhhchhhHHH
Confidence 122222232221 18999999999999999999999999999
Q ss_pred HHHHHHhhhcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccc
Q 002012 654 LVMLEEVLHKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYM 733 (982)
Q Consensus 654 l~~l~~~l~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~ 733 (982)
+..+++.|.++|+||++|+..|.++|+++++|+.+|++|++++||.||+|||||++|++||..||+++..++++|||+|+
T Consensus 482 ll~le~~L~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~ 561 (786)
T COG0542 482 LLNLERRLKKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYM 561 (786)
T ss_pred HHHHHHHHhcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCCCCccccccCCchhHHHhhCCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEEec
Q 002012 734 EKHSVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTS 813 (982)
Q Consensus 734 ~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~ts 813 (982)
++|++++|+|+|||||||++++.|++++++.|++||+||||||+||+++|.|||+||+|+++|+.|++++|+|++|||||
T Consensus 562 EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTS 641 (786)
T COG0542 562 EKHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTS 641 (786)
T ss_pred HHHHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHHHHHHHHHhCCCC
Q 002012 814 NIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKID 893 (982)
Q Consensus 814 n~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~~~~~~~~~~~ 893 (982)
|.|+..+.+.... .....++.+++.+++.++++|+|+|++|+|.+|+|.||+++++.+|+..++..+..++.+++++
T Consensus 642 N~Gs~~i~~~~~~---~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~l~~~L~~~~i~ 718 (786)
T COG0542 642 NAGSEEILRDADG---DDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNRLAKRLAERGIT 718 (786)
T ss_pred ccchHHHHhhccc---cccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHHHHHHHHhCCce
Confidence 9999887764211 2233467788899999999999999999999999999999999999999999999999988999
Q ss_pred ccCCHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEEee
Q 002012 894 LHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAILKGDIKEEDSVIIDVD 950 (982)
Q Consensus 894 l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~l~~~la~~~l~~~~~~~~~i~v~~~ 950 (982)
+++++++.++|++.+|++.||||+|+|+|++.|.++||+.+|.+.+.+|.+|.|+++
T Consensus 719 l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~~i~~~La~~iL~g~~~~~~~v~v~~~ 775 (786)
T COG0542 719 LELSDEAKDFLAEKGYDPEYGARPLRRAIQQEIEDPLADEILFGKIEDGGTVKVDVD 775 (786)
T ss_pred EEECHHHHHHHHHhccCCCcCchHHHHHHHHHHHHHHHHHHHhcccCCCcEEEEEec
Confidence 999999999999999999999999999999999999999999999999999999998
No 2
>PRK10865 protein disaggregation chaperone; Provisional
Probab=100.00 E-value=3.9e-114 Score=1064.83 Aligned_cols=849 Identities=53% Similarity=0.858 Sum_probs=778.6
Q ss_pred CCcccccHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhcCCCcHHHHHHHHcCCChHHHHHHHHHhhccCCCCCCCCCC
Q 002012 92 ITPTEFTEKAWEGIVGAVDAARVNNQQVVETEHLMKALLEQKDGLARRILTKAGQDNTKVLQATEDFISKQPKVTGATSG 171 (982)
Q Consensus 92 ~~~~~ft~~a~~~l~~A~~~A~~~~~~~v~~eHlLlaLl~~~~~~~~~iL~~~gv~~~~l~~~~~~~~~~~~~~~~~~~~ 171 (982)
||+++||+.++.+|..|..+|+.++|.+|++||||++|+.++++.+..+|..+|+|+..+++++...+++.|...+....
T Consensus 1 ~~~~~~~~~~~~~l~~a~~~a~~~~~~~~~~~hll~~l~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 80 (857)
T PRK10865 1 MRLDRLTNKFQLALADAQSLALGHDNQFIEPLHLMSALLNQEGGSVRPLLTSAGINAGQLRTDINQALSRLPQVEGTGGD 80 (857)
T ss_pred CChHHhCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhCCccHHHHHHHHcCCCHHHHHHHHHHHHhhCCCCCCCCCC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999887653332245
Q ss_pred CccChhhHHHHHHHHHHHHHcCCCccCHHHHHHHHhcCCcccccccccccCCHHHHHHHHHhhhcccccccCCCCchhHH
Q 002012 172 PIVGSNFGLLLSNAQRIKKEMEDDFVSVEHLLLAFLSDDRFGRLLFNDIRLNEKDLKDAVKAVRGHQRVTDQNPEGKYQA 251 (982)
Q Consensus 172 ~~~s~~~~~vl~~A~~~a~~~g~~~I~~ehLllall~~~~~a~~lL~~~gi~~~~l~~~i~~~~~~~~~~~~~~~~~~~~ 251 (982)
+++++.++++|+.|+.+|..+|+.+|+++|||+|++.+++....+|..+|++.+.+.+.+..+.++.......++...+.
T Consensus 81 ~~~~~~~~~~l~~a~~~~~~~~~~~i~~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (857)
T PRK10865 81 VQPSQDLVRVLNLCDKLAQKRGDNFISSELFVLAALESRGTLADILKAAGATTANITQAIEQMRGGESVNDQGAEDQRQA 160 (857)
T ss_pred CCcCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHcCcchHHHHHHHcCCCHHHHHHHHHHhhccccccccccccchhH
Confidence 78999999999999999999999999999999999965554446889999999999888876544322212222344578
Q ss_pred HHHhhhhhHHHhhcCCCCCcccchHHHHHHHHHhccCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEE
Q 002012 252 LEKYGNDLTELARSGKLDPVIGRDDEIRRCIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISL 331 (982)
Q Consensus 252 l~~~~~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l 331 (982)
|++|+.||++++++++++|+|||++++++++++|+++.++|+||+||||||||++|++||+.+..+.+|..+.+.+++.+
T Consensus 161 l~~~~~~l~~~~r~~~l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l 240 (857)
T PRK10865 161 LKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL 240 (857)
T ss_pred HHHHhhhHHHHHhcCCCCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccccccccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCCCeEEEEecCchhHh
Q 002012 332 DMASLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRGELRCIGATTLNEYR 411 (982)
Q Consensus 332 ~~~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g~i~vI~at~~~~~~ 411 (982)
+++.+.+|.+|+|+++.+++.+|+++....+++||||||+|.+.+++.+.|+.++.++|++++++|.+.|||+||.++|+
T Consensus 241 ~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g~l~~IgaTt~~e~r 320 (857)
T PRK10865 241 DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYR 320 (857)
T ss_pred ehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcCCCeEEEcCCCHHHH
Confidence 99999999999999999999999998765678999999999999998888889999999999999999999999999999
Q ss_pred hhhhcChHHHhccceEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCCcchhhHHHHHHHHH
Q 002012 412 NYIEKDPALERRFQQVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLPDKAIDLVDEAAAK 491 (982)
Q Consensus 412 ~~~~~d~al~rRf~~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~p~~a~~lld~a~~~ 491 (982)
+++..|++|.|||+.|.+..|+.+++..||+++..+|+.+|++.++++++..++.++.||++++++|++|++++|.+++.
T Consensus 321 ~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ry~~~~~~pdkAi~LiD~aaa~ 400 (857)
T PRK10865 321 QYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAASS 400 (857)
T ss_pred HHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhccccCCCCChHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCccchHHHHHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002012 492 LKMEITSKPIELDEIDRAVLKLEMEKLSLKNDTDKASKERLSKLEHDLNSLKQKQKELNDQWSREKDLMSRIRSIKEEID 571 (982)
Q Consensus 492 ~~~~~~~~~~~l~~~~~~~~~~~~e~~~l~~~~~~~~~~~l~~~~~e~~~l~~~~~~l~~~~~~e~~~~~~~~~~~~~~~ 571 (982)
+++.....|..++.+++.+..++.+...+..+.+..+..++++++.++.+++++...+.++|..++..+......+++++
T Consensus 401 ~rl~~~~kp~~L~rLer~l~~L~~E~e~l~~e~~~~~~~~~~~l~~~l~~lq~e~~~L~eq~k~~k~el~~~~~~~~ele 480 (857)
T PRK10865 401 IRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELSDKERQYSELEEEWKAEKASLSGTQTIKAELE 480 (857)
T ss_pred cccccccChHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 99999999999999999999999999888877777778889999999999999999999999999988888888888888
Q ss_pred HHHHHHHHHHhhhcHHHHHHhhhcchHHHHHHHHHHHHhHHHHHhcCCccccccCCHhHHHHHHHHhhCCCCcccchhHH
Q 002012 572 RVNLEMEAAERDYDLNRAAELKYGTMISLQRQLEEAEKNLSEFQKSGHSLLREEVTDLDIAEIVSKWTGIPLSSLQQSER 651 (982)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~gi~~~~~~~~~~ 651 (982)
..+.+++++++..++..++++.++.++.+++.+...+..- .....++.+.|+.++|+.+++.|||||+.++...+.
T Consensus 481 ~l~~kie~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~v~~~~i~~vv~~~tgip~~~~~~~~~ 556 (857)
T PRK10865 481 QAKIAIEQARRVGDLARMSELQYGKIPELEKQLAAATQLE----GKTMRLLRNKVTDAEIAEVLARWTGIPVSRMLESER 556 (857)
T ss_pred HHHHHHHHHHhhhhhhhHHHhhhhhhHHHHHHHHHHHhhh----ccccccccCccCHHHHHHHHHHHHCCCchhhhhhHH
Confidence 8888899999999999999999999999888776554322 123445678899999999999999999999999999
Q ss_pred HHHHHHHHhhhcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccc
Q 002012 652 EKLVMLEEVLHKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSE 731 (982)
Q Consensus 652 ~~l~~l~~~l~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~ 731 (982)
..+..+++.|++.++||+.+++.|..++.+.++|+.+|++|.+++||+||||||||++|++||+.+++.+.+++++||++
T Consensus 557 ~~l~~l~~~l~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se 636 (857)
T PRK10865 557 EKLLRMEQELHHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSE 636 (857)
T ss_pred HHHHHHHHHhCCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHH
Confidence 99999999999999999999999999999999999999999988999999999999999999999998888999999999
Q ss_pred cccccccccccCCCCCccccccCCchhHHHhhCCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEE
Q 002012 732 YMEKHSVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIM 811 (982)
Q Consensus 732 ~~~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~ 811 (982)
|.+.+..++++|.++||+|+.+++.+++.++..|++||+|||++++++++++.|+++|++|.++|+.|+.++|+|++||+
T Consensus 637 ~~~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~ 716 (857)
T PRK10865 637 FMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIM 716 (857)
T ss_pred hhhhhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEE
Confidence 99888888999999999999998889999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHHHHHHHHHhCC
Q 002012 812 TSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKK 891 (982)
Q Consensus 812 tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~~~~~~~~~ 891 (982)
|||.+...+.+.+.. ..+..+...+...+++.|+|+|++|+|.+|+|.|++.+++.+|++..+.++.+++...+
T Consensus 717 TSN~g~~~~~~~~~~------~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~l~~rl~~~g 790 (857)
T PRK10865 717 TSNLGSDLIQERFGE------LDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEERG 790 (857)
T ss_pred eCCcchHHHHHhccc------cchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999998766553221 12345566777788899999999999999999999999999999999999988887778
Q ss_pred CCccCCHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEEee
Q 002012 892 IDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAILKGDIKEEDSVIIDVD 950 (982)
Q Consensus 892 ~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~l~~~la~~~l~~~~~~~~~i~v~~~ 950 (982)
+.+.++++++++|+.++|++.||||+|+++|++.|.+++|+.++.+.+.+|+++.|+++
T Consensus 791 i~l~is~~al~~L~~~gy~~~~GARpL~r~I~~~i~~~la~~iL~g~~~~~~~~~~~~~ 849 (857)
T PRK10865 791 YEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGELVPGKVIRLEVN 849 (857)
T ss_pred CcCcCCHHHHHHHHHcCCCccCChHHHHHHHHHHHHHHHHHHHHcCcCCCCCEEEEEEE
Confidence 88999999999999999999999999999999999999999999999999999999997
No 3
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=100.00 E-value=1.8e-113 Score=1065.13 Aligned_cols=846 Identities=61% Similarity=0.971 Sum_probs=775.8
Q ss_pred ccHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhcCCCcHHHHHHHHcCCChHHHHHHHHHhhccCCCCCCCCCCCccCh
Q 002012 97 FTEKAWEGIVGAVDAARVNNQQVVETEHLMKALLEQKDGLARRILTKAGQDNTKVLQATEDFISKQPKVTGATSGPIVGS 176 (982)
Q Consensus 97 ft~~a~~~l~~A~~~A~~~~~~~v~~eHlLlaLl~~~~~~~~~iL~~~gv~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~ 176 (982)
||+.++++|..|+.+|++++|.+|+|||||+||+.++++.+.++|+++|+|++.+++++...+++.|...+.+..++|++
T Consensus 1 fT~~a~~vL~~A~~~A~~~~h~~V~~EHLLlaLl~~~~g~a~~iL~~~Gvd~~~l~~~l~~~l~~~~~~~~~~~~~~~S~ 80 (852)
T TIGR03346 1 FTEKFQEALQAAQSLALGRDHQQIEPEHLLKALLDQEGGLARRLLQKAGVNVGALRQALEKELEKLPKVSGPGGQVYLSP 80 (852)
T ss_pred CCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhCCccHHHHHHHHcCCCHHHHHHHHHHHhcccccCCCCCCCCCcCH
Confidence 89999999999999999999999999999999999999999999999999999999999999987664333224678999
Q ss_pred hhHHHHHHHHHHHHHcCCCccCHHHHHHHHhcCCcccccccccccCCHHHHHHHHHhhhcccccccCCCCchhHHHHHhh
Q 002012 177 NFGLLLSNAQRIKKEMEDDFVSVEHLLLAFLSDDRFGRLLFNDIRLNEKDLKDAVKAVRGHQRVTDQNPEGKYQALEKYG 256 (982)
Q Consensus 177 ~~~~vl~~A~~~a~~~g~~~I~~ehLllall~~~~~a~~lL~~~gi~~~~l~~~i~~~~~~~~~~~~~~~~~~~~l~~~~ 256 (982)
.++++|+.|+.+|..+|+++|+++|||+||+++++.+.++|..+|++.+.+.+.+....++.......++...+.|++|+
T Consensus 81 ~~~~vLe~A~~~A~~~g~~~I~teHLLlALl~e~~~a~~iL~~~gi~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (852)
T TIGR03346 81 ELNRLLNLAEKLAQKRGDEFISSEHLLLALLDDKGTLGKLLKEAGATADALEAAINAVRGGQKVTSANAEDQYEALEKYA 160 (852)
T ss_pred HHHHHHHHHHHHHHHcCCCcccHHHHHHHHHcCCccHHHHHHHcCCCHHHHHHHHHhhccCccccccccccchhHHHHHh
Confidence 99999999999999999999999999999996544456899999999999998887654322222222234457899999
Q ss_pred hhhHHHhhcCCCCCcccchHHHHHHHHHhccCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccc
Q 002012 257 NDLTELARSGKLDPVIGRDDEIRRCIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASL 336 (982)
Q Consensus 257 ~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l 336 (982)
.+|++++++++++++|||++++++++++|+++.++|+||+||||||||++|+++|+.+..+.+|..+.+.+++.++++.+
T Consensus 161 ~~l~~~~~~~~~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l 240 (852)
T TIGR03346 161 RDLTERAREGKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGAL 240 (852)
T ss_pred hhHHHHhhCCCCCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCCCeEEEEecCchhHhhhhhc
Q 002012 337 VAGTCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRGELRCIGATTLNEYRNYIEK 416 (982)
Q Consensus 337 ~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g~i~vI~at~~~~~~~~~~~ 416 (982)
.+|.+|.|+++.+++.+++++...++++||||||+|.+.++|.+.++.++.|+|++++++|.+.|||+||.++|++++..
T Consensus 241 ~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g~i~~IgaTt~~e~r~~~~~ 320 (852)
T TIGR03346 241 IAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGELHCIGATTLDEYRKYIEK 320 (852)
T ss_pred hhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcCceEEEEeCcHHHHHHHhhc
Confidence 99999999999999999999976567899999999999988777777889999999999999999999999999999999
Q ss_pred ChHHHhccceEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCCcchhhHHHHHHHHHhhhhc
Q 002012 417 DPALERRFQQVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLPDKAIDLVDEAAAKLKMEI 496 (982)
Q Consensus 417 d~al~rRf~~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~p~~a~~lld~a~~~~~~~~ 496 (982)
|++|.|||+.|.++.|+.+++..||+.+..+|+.+|++.++++++..++.+|.||+++|++||+|++|+|+||+.+++..
T Consensus 321 d~al~rRf~~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~lPdkAidlld~a~a~~~~~~ 400 (852)
T TIGR03346 321 DAALERRFQPVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPDKAIDLIDEAAARIRMEI 400 (852)
T ss_pred CHHHHhcCCEEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCccchHHHHHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002012 497 TSKPIELDEIDRAVLKLEMEKLSLKNDTDKASKERLSKLEHDLNSLKQKQKELNDQWSREKDLMSRIRSIKEEIDRVNLE 576 (982)
Q Consensus 497 ~~~~~~l~~~~~~~~~~~~e~~~l~~~~~~~~~~~l~~~~~e~~~l~~~~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~ 576 (982)
...|..++.+++++.+++.+...+.++.+.....+++.+..++.+++.++..+...|..+...+.....+++++...+.+
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (852)
T TIGR03346 401 DSKPEELDELDRRIIQLEIEREALKKEKDEASKERLEDLEKELAELEEEYADLEEQWKAEKAAIQGIQQIKEEIEQVRLE 480 (852)
T ss_pred cCCchhHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999988877766677788889999999999999999999999999988888888888777777
Q ss_pred HHHHHhhhcHHHHHHhhhcchHHHHHHHHHHHHhHHHHHhcCCccccccCCHhHHHHHHHHhhCCCCcccchhHHHHHHH
Q 002012 577 MEAAERDYDLNRAAELKYGTMISLQRQLEEAEKNLSEFQKSGHSLLREEVTDLDIAEIVSKWTGIPLSSLQQSEREKLVM 656 (982)
Q Consensus 577 ~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~gi~~~~~~~~~~~~l~~ 656 (982)
..++++.+++.++.+++|+.++.+++.+...+....+. ....++...|+.++|+.+++.|+|+|+.++...+...+..
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~v~~~~i~~v~~~~tgip~~~~~~~e~~~l~~ 558 (852)
T TIGR03346 481 LEQAEREGDLAKAAELQYGKLPELEKRLQAAEAKLGEE--TKPRLLREEVTAEEIAEVVSRWTGIPVSKMLEGEREKLLH 558 (852)
T ss_pred HHHHHhhhhHHHHHHhhhcchHHHHHHHHHHHHHhhhc--cccccccCCcCHHHHHHHHHHhcCCCcccccHHHHHHHHH
Confidence 78889999999999999999999888887666544331 1234556789999999999999999999999999999999
Q ss_pred HHHhhhcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEecccccccc
Q 002012 657 LEEVLHKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKH 736 (982)
Q Consensus 657 l~~~l~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~ 736 (982)
+++.|.+.|+||+.+++.|..++.+.+.|+..|.+|.+++||+||||||||++|++||+.+++++.+++++||++|.+.+
T Consensus 559 l~~~l~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~ 638 (852)
T TIGR03346 559 MEEVLHERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKH 638 (852)
T ss_pred HHHHhhcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999988999999999999999
Q ss_pred ccccccCCCCCccccccCCchhHHHhhCCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCC
Q 002012 737 SVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIG 816 (982)
Q Consensus 737 ~~~~l~g~~~g~vg~~~~~~l~~~l~~~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~ 816 (982)
.+++++|.++||+|+.+++.+++.++..|++||||||||++++++++.|+++|++|+++|..|+.++|+|++||||||.+
T Consensus 639 ~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g 718 (852)
T TIGR03346 639 SVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLG 718 (852)
T ss_pred hHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHHHHHHHHHhCCCCccC
Q 002012 817 SHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHY 896 (982)
Q Consensus 817 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~~~~~~~~~~~l~i 896 (982)
...+.+... . ..+..++..+.+.+++.|+|+|++|||.+++|.|++.+++.+|+...+..+.+++...++.+.+
T Consensus 719 ~~~~~~~~~---~---~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~~~~l~i 792 (852)
T TIGR03346 719 SQFIQELAG---G---DDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKRLAERKITLEL 792 (852)
T ss_pred hHhHhhhcc---c---ccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHHCCCeecC
Confidence 886655311 1 1244566778888999999999999999999999999999999999999999988888888999
Q ss_pred CHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEEee
Q 002012 897 TKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAILKGDIKEEDSVIIDVD 950 (982)
Q Consensus 897 ~~~a~~~L~~~~~~~~~gaR~L~~~i~~~l~~~la~~~l~~~~~~~~~i~v~~~ 950 (982)
+++++++|++++|++.+|+|+|+++|++.+.+++|+.++.+.+.+|+++.|+++
T Consensus 793 ~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~l~~~~l~~~~~~~~~~~~~~~ 846 (852)
T TIGR03346 793 SDAALDFLAEAGYDPVYGARPLKRAIQREIENPLAKKILAGEVADGDTIVVDVE 846 (852)
T ss_pred CHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEee
Confidence 999999999999999999999999999999999999999999999999999986
No 4
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=100.00 E-value=8.4e-112 Score=1039.93 Aligned_cols=829 Identities=40% Similarity=0.650 Sum_probs=726.8
Q ss_pred ccHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhcCCCcHHHHHHHHcCCChHHHHHHHHHhhccCCCCCCCCCCCccCh
Q 002012 97 FTEKAWEGIVGAVDAARVNNQQVVETEHLMKALLEQKDGLARRILTKAGQDNTKVLQATEDFISKQPKVTGATSGPIVGS 176 (982)
Q Consensus 97 ft~~a~~~l~~A~~~A~~~~~~~v~~eHlLlaLl~~~~~~~~~iL~~~gv~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~ 176 (982)
+|++++++|..|+.+|+.++|++|+|||||+|||.++++.+.++|+.+|++++.+++++...+.+.|...+ ..+++|+
T Consensus 1 Lt~~a~~~L~~A~~~A~~~~h~~I~~eHLLlaLL~~~~~~~~~iL~~~Gvd~~~Lr~~le~~l~~~p~~~~--~~~~~S~ 78 (852)
T TIGR03345 1 LNPTSRRALEQAAALCVARGHPEVELEHWLLALLDQPDSDLAAILRHFGVDLGRLKADLARALDKLPRGNT--RTPVFSP 78 (852)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHhccCcHHHHHHHHcCCCHHHHHHHHHHHhccCCCCCC--CCCCcCH
Confidence 68999999999999999999999999999999999999999999999999999999999999887664222 3578999
Q ss_pred hhHHHHHHHHH-HHHHcCCCccCHHHHHHHHhcCCc---ccccccccc-cCCHHHHHHHHHhh-hccc-cc---ccCC--
Q 002012 177 NFGLLLSNAQR-IKKEMEDDFVSVEHLLLAFLSDDR---FGRLLFNDI-RLNEKDLKDAVKAV-RGHQ-RV---TDQN-- 244 (982)
Q Consensus 177 ~~~~vl~~A~~-~a~~~g~~~I~~ehLllall~~~~---~a~~lL~~~-gi~~~~l~~~i~~~-~~~~-~~---~~~~-- 244 (982)
.++++|+.|+. .+..+|+.+|+++|||+||++++. .+..++..+ |++.+.+.+.+..+ .+.. .. .+..
T Consensus 79 ~l~~vL~~A~~~~a~~~g~~~I~teHLLlALl~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (852)
T TIGR03345 79 HLVELLQEAWLLASLELGDGRIRSGHLLLALLTDPELRRLLGSISPELAKIDREALREALPALVEGSAEASAAAADAGPA 158 (852)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHccccchhHHHHHHHHHhCCCHHHHHHHHHHHhcCCccccccccccccc
Confidence 99999999997 466799999999999999996533 445577776 99999998888664 2211 11 0000
Q ss_pred --CC--chhHHHHHhhhhhHHHhhcCCCCCcccchHHHHHHHHHhccCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCC
Q 002012 245 --PE--GKYQALEKYGNDLTELARSGKLDPVIGRDDEIRRCIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVP 320 (982)
Q Consensus 245 --~~--~~~~~l~~~~~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p 320 (982)
+. ...+.|++|+.||++++++++++|+|||++++++++++|+++.++|+||+||||||||++|++||+.+..+.+|
T Consensus 159 ~~~~~~~~~~~l~~~~~~L~~~~r~~~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~ 238 (852)
T TIGR03345 159 AAAAGAAGTSALDQYTTDLTAQAREGKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVP 238 (852)
T ss_pred cccccccchhhHHHHhhhHHHHhcCCCCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCC
Confidence 11 23468999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCeEEEEecccccccccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCCCeE
Q 002012 321 ETLQNRKLISLDMASLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRGELR 400 (982)
Q Consensus 321 ~~l~~~~v~~l~~~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g~i~ 400 (982)
..+.+.+++.++++.+.+|.+|+|+++.+++.+++++...++++||||||+|++.++|.+.+..++.|+|++++++|.+.
T Consensus 239 ~~l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G~l~ 318 (852)
T TIGR03345 239 PALRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARGELR 318 (852)
T ss_pred ccccCCeEEEeehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCCCeE
Confidence 99999999999999999999999999999999999998656789999999999998887777788899999999999999
Q ss_pred EEEecCchhHhhhhhcChHHHhccceEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCCcch
Q 002012 401 CIGATTLNEYRNYIEKDPALERRFQQVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLPDK 480 (982)
Q Consensus 401 vI~at~~~~~~~~~~~d~al~rRf~~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~p~~ 480 (982)
||||||.++|++++.+||+|.|||+.|.+.+|+.+++..||+++...|+.+|++.++++++..++.+|.||++++++||+
T Consensus 319 ~IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPDK 398 (852)
T TIGR03345 319 TIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDK 398 (852)
T ss_pred EEEecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhhhhccCCccchHHHHHHHHHHHHHHhhccccCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002012 481 AIDLVDEAAAKLKMEITSKPIELDEIDRAVLKLEMEKLSLKNDTD--KASKERLSKLEHDLNSLKQKQKELNDQWSREKD 558 (982)
Q Consensus 481 a~~lld~a~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~l~~~~~--~~~~~~l~~~~~e~~~l~~~~~~l~~~~~~e~~ 558 (982)
|++|+|+||+.+++...+.|..++.+++++.+++.+...+.++.. .....+..+++.++..+++++..+...|..++.
T Consensus 399 AIdlldea~a~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (852)
T TIGR03345 399 AVSLLDTACARVALSQNATPAALEDLRRRIAALELELDALEREAALGADHDERLAELRAELAALEAELAALEARWQQEKE 478 (852)
T ss_pred HHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988877755421 122335667778888999999999999998876
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcH---HHHHHhhhcchHHHHHHHHHHHHhHHHHHhcCCccccccCCHhHHHHHH
Q 002012 559 LMSRIRSIKEEIDRVNLEMEAAERDYDL---NRAAELKYGTMISLQRQLEEAEKNLSEFQKSGHSLLREEVTDLDIAEIV 635 (982)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~ 635 (982)
..........+ ..++. ....++.+..++.+++.+...+. ...+....|+..+|++++
T Consensus 479 ~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~v~~~~i~~vv 538 (852)
T TIGR03345 479 LVEAILALRAE------------LEADADAPADDDAALRAQLAELEAALASAQG--------EEPLVFPEVDAQAVAEVV 538 (852)
T ss_pred HHHHHHHHHHH------------hhhcccchhhhhHHHHHHHHHHHHHHHHHhh--------ccccccceecHHHHHHHH
Confidence 54433222211 11111 12233444555555554443322 133456789999999999
Q ss_pred HHhhCCCCcccchhHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHH
Q 002012 636 SKWTGIPLSSLQQSEREKLVMLEEVLHKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALAD 715 (982)
Q Consensus 636 ~~~~gi~~~~~~~~~~~~l~~l~~~l~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~ 715 (982)
+.|||||+.++...+...+..+++.|.+.|+||+++++.|.+++.+++.|+.+|.+|.+++||+||||||||++|++||+
T Consensus 539 ~~~tgip~~~~~~~e~~~l~~l~~~L~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~ 618 (852)
T TIGR03345 539 ADWTGIPVGRMVRDEIEAVLSLPDRLAERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAE 618 (852)
T ss_pred HHHHCCCchhhchhHHHHHHHHHHHhcCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCceEEEeccccccccccccccCCCCCccccccCCchhHHHhhCCCeEEEEccccccCHHHHHHHHHhhhcCcee
Q 002012 716 FLFNTENALVRIDMSEYMEKHSVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEIEKAHQDVFNILLQLLDDGRIT 795 (982)
Q Consensus 716 ~l~~~~~~~v~i~~s~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~ 795 (982)
.+|++...++++||++|.+.+++++++|+++||+|+.+++.+++.++++|++||+|||||++++++++.|+++|++|.++
T Consensus 619 ~l~~~~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~g~L~~~v~~~p~svvllDEieka~~~v~~~Llq~ld~g~l~ 698 (852)
T TIGR03345 619 LLYGGEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFYQVFDKGVME 698 (852)
T ss_pred HHhCCCcceEEEeHHHhhhhhhhccccCCCCCcccccccchHHHHHHhCCCcEEEEechhhcCHHHHHHHHHHhhcceee
Confidence 99988889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcEEecccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHH
Q 002012 796 DSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKI 875 (982)
Q Consensus 796 d~~g~~~~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~i 875 (982)
|+.|+.++|+|++||||||.+...+.+.+.... .....+.+...+.+.++++|+|+|++||+ +|+|.||+.+++.+|
T Consensus 699 d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~f~PEflnRi~-iI~F~pLs~e~l~~I 775 (852)
T TIGR03345 699 DGEGREIDFKNTVILLTSNAGSDLIMALCADPE--TAPDPEALLEALRPELLKVFKPAFLGRMT-VIPYLPLDDDVLAAI 775 (852)
T ss_pred cCCCcEEeccccEEEEeCCCchHHHHHhccCcc--cCcchHHHHHHHHHHHHHhccHHHhccee-EEEeCCCCHHHHHHH
Confidence 999999999999999999999887766422111 01124566778889999999999999997 999999999999999
Q ss_pred HHHHHHHHHHHHHhC-CCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEEee
Q 002012 876 VEIQMNRVKDRLKQK-KIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAILKGDIKEEDSVIIDVD 950 (982)
Q Consensus 876 l~~~l~~~~~~~~~~-~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~l~~~la~~~l~~~~~~~~~i~v~~~ 950 (982)
+...+..+.+++..+ ++.+.++++++++|++.+|++.+|||+|++.|++.+.++||+.+|.+....+....|++.
T Consensus 776 v~~~L~~l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~~~la~~~l~~~~~~~~~~~~~~~ 851 (852)
T TIGR03345 776 VRLKLDRIARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPELSRQILERLAAGEPIERIHLD 851 (852)
T ss_pred HHHHHHHHHHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHHhChhcCCCeeEEEEe
Confidence 999999998888766 889999999999999999999999999999999999999999999998776666677654
No 5
>CHL00095 clpC Clp protease ATP binding subunit
Probab=100.00 E-value=1.3e-110 Score=1037.44 Aligned_cols=793 Identities=48% Similarity=0.767 Sum_probs=705.5
Q ss_pred CcccccHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhcCCCcHHHHHHHHcCCChHHHHHHHHHhhccCCCCCCCCCCC
Q 002012 93 TPTEFTEKAWEGIVGAVDAARVNNQQVVETEHLMKALLEQKDGLARRILTKAGQDNTKVLQATEDFISKQPKVTGATSGP 172 (982)
Q Consensus 93 ~~~~ft~~a~~~l~~A~~~A~~~~~~~v~~eHlLlaLl~~~~~~~~~iL~~~gv~~~~l~~~~~~~~~~~~~~~~~~~~~ 172 (982)
||++||++++++|..|+.+|++++|++|+|||||+|||.++++.+.++|+++|++++.++..+...+++.+... ...+
T Consensus 1 m~~rfT~~a~~vL~~A~~~A~~~~h~~V~~EHLLLaLL~~~~~~a~~iL~~~gid~~~l~~~l~~~l~~~~~~~--~~~~ 78 (821)
T CHL00095 1 MFERFTEKAIKVIMLSQEEARRLGHNFVGTEQILLGLIGEGTGIAARALKSMGVTLKDARIEVEKIIGRGTGFV--AVEI 78 (821)
T ss_pred ChhhHhHHHHHHHHHHHHHHHHhCCCcCcHHHHHHHHHhCCCchHHHHHHHcCCCHHHHHHHHHHHHhcCCCCC--cccc
Confidence 78999999999999999999999999999999999999999999999999999999999999999887755311 2358
Q ss_pred ccChhhHHHHHHHHHHHHHcCCCccCHHHHHHHHhc-CCcccccccccccCCHHHHHHHHHhhhcccc--ccc-CCCCch
Q 002012 173 IVGSNFGLLLSNAQRIKKEMEDDFVSVEHLLLAFLS-DDRFGRLLFNDIRLNEKDLKDAVKAVRGHQR--VTD-QNPEGK 248 (982)
Q Consensus 173 ~~s~~~~~vl~~A~~~a~~~g~~~I~~ehLllall~-~~~~a~~lL~~~gi~~~~l~~~i~~~~~~~~--~~~-~~~~~~ 248 (982)
+|++.++++|+.|+.+|..+++.+|+++|||+||++ +++.+.++|+.+|++.+.++..+....+... ... ......
T Consensus 79 ~~S~~~~~vL~~A~~~A~~~~~~~I~~eHLLlALL~~~ds~a~~iL~~~gvd~~~L~~~l~~~l~~~~e~~~~~~~~~~~ 158 (821)
T CHL00095 79 PFTPRAKRVLEMSLEEARDLGHNYIGTEHLLLALLEEGEGVAARVLENLGVDLSKIRSLILNLIGEIIEAILGAEQSRSK 158 (821)
T ss_pred ccCHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHhCCCchHHHHHHHcCCCHHHHHHHHHHHhcccccccccccccccc
Confidence 899999999999999999999999999999999995 4567778999999999999988876543221 100 111233
Q ss_pred hHHHHHhhhhhHHHhhcCCCCCcccchHHHHHHHHHhccCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeE
Q 002012 249 YQALEKYGNDLTELARSGKLDPVIGRDDEIRRCIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKL 328 (982)
Q Consensus 249 ~~~l~~~~~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v 328 (982)
.+.|++|+.+|++.++.++++|+|||++++++++++|+++.++|+||+||||||||++|++||+.+..+++|..+.+.++
T Consensus 159 ~~~l~~~~~~l~~~a~~~~~~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i 238 (821)
T CHL00095 159 TPTLEEFGTNLTKEAIDGNLDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLV 238 (821)
T ss_pred chHHHHHHHHHHHHHHcCCCCCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeE
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecccccccccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCCCeEEEEecCch
Q 002012 329 ISLDMASLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRGELRCIGATTLN 408 (982)
Q Consensus 329 ~~l~~~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g~i~vI~at~~~ 408 (982)
+.+|++++.+|++|+|+++++++.+++++.. .+++||||||+|.+++++.+.+..++.++|++.+++|++.|||+||.+
T Consensus 239 ~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~-~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg~l~~IgaTt~~ 317 (821)
T CHL00095 239 ITLDIGLLLAGTKYRGEFEERLKRIFDEIQE-NNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLD 317 (821)
T ss_pred EEeeHHHHhccCCCccHHHHHHHHHHHHHHh-cCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCCCcEEEEeCCHH
Confidence 9999999999999999999999999999975 567899999999999988777778899999999999999999999999
Q ss_pred hHhhhhhcChHHHhccceEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCCcchhhHHHHHH
Q 002012 409 EYRNYIEKDPALERRFQQVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLPDKAIDLVDEA 488 (982)
Q Consensus 409 ~~~~~~~~d~al~rRf~~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~p~~a~~lld~a 488 (982)
+|+++++.||+|.+||+.|.+.+|+.+++..|++.+.+.|+.+|++.++++++..++.+|.||++++++|++|++|+|+|
T Consensus 318 ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~r~lPdkaidlld~a 397 (821)
T CHL00095 318 EYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRFLPDKAIDLLDEA 397 (821)
T ss_pred HHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCccccCchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhccCCccchHHHHHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002012 489 AAKLKMEITSKPIELDEIDRAVLKLEMEKLSLKNDTDKASKERLSKLEHDLNSLKQKQKELNDQWSREKDLMSRIRSIKE 568 (982)
Q Consensus 489 ~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~l~~~~~~~~~~~l~~~~~e~~~l~~~~~~l~~~~~~e~~~~~~~~~~~~ 568 (982)
++.+++.....|..++.+++++.++..+...+..+.+. .+...+..+..++++++..+...|..+.
T Consensus 398 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 463 (821)
T CHL00095 398 GSRVRLINSRLPPAARELDKELREILKDKDEAIREQDF---ETAKQLRDREMEVRAQIAAIIQSKKTEE----------- 463 (821)
T ss_pred HHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhCcch---HHHHHHHHHHHHHHHHHHHHHHHHHhhh-----------
Confidence 99999988888888888888888888776655443221 1111111222223333333333332220
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHhhhcchHHHHHHHHHHHHhHHHHHhcCCccccccCCHhHHHHHHHHhhCCCCcccch
Q 002012 569 EIDRVNLEMEAAERDYDLNRAAELKYGTMISLQRQLEEAEKNLSEFQKSGHSLLREEVTDLDIAEIVSKWTGIPLSSLQQ 648 (982)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~gi~~~~~~~ 648 (982)
. .......|+..||+++++.|||||+.++..
T Consensus 464 -----------------------------------------------~--~~~~~~~v~~~~i~~~~~~~tgip~~~~~~ 494 (821)
T CHL00095 464 -----------------------------------------------E--KRLEVPVVTEEDIAEIVSAWTGIPVNKLTK 494 (821)
T ss_pred -----------------------------------------------c--ccccCCccCHHHHHHHHHHHHCCCchhhch
Confidence 0 011235699999999999999999999999
Q ss_pred hHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEe
Q 002012 649 SEREKLVMLEEVLHKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRID 728 (982)
Q Consensus 649 ~~~~~l~~l~~~l~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~ 728 (982)
.+.+.+..+++.|.+.|+||++|++.|..++.+.+.|+..|.+|.+++||+||||||||++|++||+.+|+++.+++++|
T Consensus 495 ~~~~~l~~l~~~L~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d 574 (821)
T CHL00095 495 SESEKLLHMEETLHKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLD 574 (821)
T ss_pred hHHHHHHHHHHHhcCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999889999999
Q ss_pred ccccccccccccccCCCCCccccccCCchhHHHhhCCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEE
Q 002012 729 MSEYMEKHSVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCV 808 (982)
Q Consensus 729 ~s~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~i 808 (982)
|++|.+.+.+++++|+++||+|+++++.+++.++.+|++||+|||||++++++++.|+++||+|+++|+.|+.++|+|++
T Consensus 575 ~s~~~~~~~~~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i 654 (821)
T CHL00095 575 MSEYMEKHTVSKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTL 654 (821)
T ss_pred chhccccccHHHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCChHHHHHh---hhhcccc---hHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHHH
Q 002012 809 VIMTSNIGSHYILET---LQSVQDS---KEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNR 882 (982)
Q Consensus 809 iI~tsn~~~~~i~~~---~~~~~~~---~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~ 882 (982)
||||||.+...+... +...... ....+..++..+.+.+++.|+|+|++|+|.+|+|.||+.+++.+|++..+.+
T Consensus 655 ~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~~l~~ 734 (821)
T CHL00095 655 IIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEIMLKN 734 (821)
T ss_pred EEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 999999998766532 1111000 1223667788888999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEEeec
Q 002012 883 VKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAILKGDIKEEDSVIIDVDD 951 (982)
Q Consensus 883 ~~~~~~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~l~~~la~~~l~~~~~~~~~i~v~~~~ 951 (982)
+.+++..+++.+.++++++++|++.+|++.+|||+|+++|++.+.+++++.++.+.+.+|+++.|++++
T Consensus 735 l~~rl~~~~i~l~~~~~~~~~La~~~~~~~~GAR~l~r~i~~~i~~~l~~~~l~~~~~~g~~v~~~~~~ 803 (821)
T CHL00095 735 LFKRLNEQGIQLEVTERIKTLLIEEGYNPLYGARPLRRAIMRLLEDPLAEEVLSFKIKPGDIIIVDVND 803 (821)
T ss_pred HHHHHHHCCcEEEECHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHhCccCCCCEEEEEEeC
Confidence 999998889999999999999999999999999999999999999999999999999999999999974
No 6
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-108 Score=973.94 Aligned_cols=839 Identities=47% Similarity=0.706 Sum_probs=769.4
Q ss_pred CcCCcccccHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhcCCCcHHHHHHHHcC-CChHHHHHHHHHhhccCCCCCCC
Q 002012 90 SQITPTEFTEKAWEGIVGAVDAARVNNQQVVETEHLMKALLEQKDGLARRILTKAG-QDNTKVLQATEDFISKQPKVTGA 168 (982)
Q Consensus 90 ~~~~~~~ft~~a~~~l~~A~~~A~~~~~~~v~~eHlLlaLl~~~~~~~~~iL~~~g-v~~~~l~~~~~~~~~~~~~~~~~ 168 (982)
..+++++||++|.+||..|+.+|+++||++|+|+|++.+||.+++|+++++|.+.+ ++..++..++...+.+.|+..+.
T Consensus 5 ~~t~~q~lT~~Aa~~L~~a~~~Arrrgh~qvtplH~~~~LLs~~t~~lr~ac~~~~~l~~ralelc~~v~l~rlpt~~~p 84 (898)
T KOG1051|consen 5 VYTVQQTLTEEAATVLKQAVTEARRRGHAQVTPLHVASTLLSSPTGILRRACIKSHPLQCRALELCFNVSLNRLPTSYGP 84 (898)
T ss_pred ccchHhhhCHHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHcCCchHHHHHHHhcCcccHHHHHHHHHHHHHhccCCCCC
Confidence 36678899999999999999999999999999999999999999999999999999 99999999999999999988765
Q ss_pred CCCCccChhhHHHHHHHHHHHHHcCCCccCHHHHHHHHh-cCCcccccccccccCCHHHHHHHHHhhhcccccccCCCCc
Q 002012 169 TSGPIVGSNFGLLLSNAQRIKKEMEDDFVSVEHLLLAFL-SDDRFGRLLFNDIRLNEKDLKDAVKAVRGHQRVTDQNPEG 247 (982)
Q Consensus 169 ~~~~~~s~~~~~vl~~A~~~a~~~g~~~I~~ehLllall-~~~~~a~~lL~~~gi~~~~l~~~i~~~~~~~~~~~~~~~~ 247 (982)
+...+++..+++++..+.+.+..+++.||.+||+.|.+. .|+....++|+++|++...++..|.+..+........+..
T Consensus 85 ~~sn~l~aalkr~qa~qrr~~~~~~~~~vkvE~~~li~silDdp~vsrv~reag~~s~~vK~~ve~~~g~~~~~~~~~~~ 164 (898)
T KOG1051|consen 85 PVSNALMAALKRAQAHQRRGCEEQQQQAVKVELEQLILSILDDPSVSRVMREAGFSSSAVKSAVEQPVGQFRSPSRGPLW 164 (898)
T ss_pred ccchHhHHHHHHHHHHHHhcchhhccchhhHhHHhhheeeecCchHHHHHHHhcCChHHHHHHHHhhccccCCCCcCCcc
Confidence 556677788888888888888889999999999955544 5555667999999999999999999988655555555566
Q ss_pred hhHHHHHhhhhhHHHhhcCCCCCcccc-hHHHHHHHHHhccCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCC
Q 002012 248 KYQALEKYGNDLTELARSGKLDPVIGR-DDEIRRCIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNR 326 (982)
Q Consensus 248 ~~~~l~~~~~~l~~~~~~~~l~~liG~-~~~i~~l~~~L~~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~ 326 (982)
....+.+|+.++++.++.++++|++|+ ++++++++++|.|++++|++|+|+||+|||.+++.+|+++..|++|..+.+.
T Consensus 165 ~~~~L~~~~~dl~p~a~~gkldPvigr~deeirRvi~iL~Rrtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~ 244 (898)
T KOG1051|consen 165 PLLFLENYGTDLTPRARQGKLDPVIGRHDEEIRRVIEILSRKTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDK 244 (898)
T ss_pred chhHHHhcccccChhhhccCCCCccCCchHHHHHHHHHHhccCCCCceEEecCCCCchhHHHHHHHHhhcCCCCcccccc
Confidence 688999999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecccccccccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCCCeEEEEecC
Q 002012 327 KLISLDMASLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRGELRCIGATT 406 (982)
Q Consensus 327 ~v~~l~~~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g~i~vI~at~ 406 (982)
+++.+++..+.+|++++|+++.+++.+.+++...++++||||||+|++.+++.+.+..++.|+|++++.+|.+|||||||
T Consensus 245 ~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~~~~~d~~nlLkp~L~rg~l~~IGatT 324 (898)
T KOG1051|consen 245 KLIALDFGSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSNYGAIDAANLLKPLLARGGLWCIGATT 324 (898)
T ss_pred ceEEEEhhhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCcchHHHHHHhhHHHHhcCCeEEEeccc
Confidence 99999999999999999999999999999998778899999999999999988777889999999999999999999999
Q ss_pred chhHhhhhhcChHHHhccceEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCCcchhhHHHH
Q 002012 407 LNEYRNYIEKDPALERRFQQVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLPDKAIDLVD 486 (982)
Q Consensus 407 ~~~~~~~~~~d~al~rRf~~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~p~~a~~lld 486 (982)
.++|++++..||+|.+||+.+.++.|+.+++..||+++.++|+.||++.++++++..++.++.+|++.+++|+++++++|
T Consensus 325 ~e~Y~k~iekdPalErrw~l~~v~~pS~~~~~~iL~~l~~~~e~~hg~~~s~~a~~~a~~~s~~~~t~r~lpd~aidl~d 404 (898)
T KOG1051|consen 325 LETYRKCIEKDPALERRWQLVLVPIPSVENLSLILPGLSERYEVHHGVRISDESLFSAAQLSARYITLSFLPDCAIDLED 404 (898)
T ss_pred HHHHHHHHhhCcchhhCcceeEeccCcccchhhhhhhhhhhhccccCCcccccccccccchhhhhcccCcCchhcccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhccCCccchHHHHHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002012 487 EAAAKLKMEITSKPIELDEIDRAVLKLEMEKLSLKNDTDKASKERLSKLEHDLNSLKQKQKELNDQWSREKDLMSRIRSI 566 (982)
Q Consensus 487 ~a~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~l~~~~~~~~~~~l~~~~~e~~~l~~~~~~l~~~~~~e~~~~~~~~~~ 566 (982)
+|++..+.+....|.+++.+++...+.+.+..+++++.+.++.+++. ...+...+..+.++...|..+++.++.+...
T Consensus 405 Ea~a~~~~~~~~lP~wL~~~~~~~~~~~~e~~~L~kk~d~~~h~r~~--~~~~~~~~~~~~~l~~~~~~~~s~~~~l~~~ 482 (898)
T KOG1051|consen 405 EAAALVKSQAESLPPWLQNLERVDIKLQDEISELQKKWNQALHKRPS--LESLAPSKPTQQPLSASVDSERSVIEELKLK 482 (898)
T ss_pred HHHHHHhhhhhhCCHHHHhhhhhhhhhHHHHHHHHHhhhhhhccccc--cccccccccccccchhhhccchhHHhhhccc
Confidence 99999999999999999999999999999999998888777766666 5566667777888999999999999988888
Q ss_pred HHHHHHHHHHHHHHHhhhcHHHHHHhhhcchHHHHHHHHHHHHhHHHHHhcCCccccccCCHhHHHHHHHHhhCCCCccc
Q 002012 567 KEEIDRVNLEMEAAERDYDLNRAAELKYGTMISLQRQLEEAEKNLSEFQKSGHSLLREEVTDLDIAEIVSKWTGIPLSSL 646 (982)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~gi~~~~~ 646 (982)
++++++... ++++++.+++.+++++.|+.+| .+..++.. ....+..++..+++.|+|+|...+
T Consensus 483 ~~~~~~~~~-~~k~~r~~d~~~~~~l~~~~~p-----~~~~~~~~-----------~~~~~~~~i~~~~s~~tgip~~~~ 545 (898)
T KOG1051|consen 483 KNSLDRNSL-LAKAHRPNDYTRETDLRYGRIP-----DELSEKSN-----------DNQGGESDISEVVSRWTGIPVDRL 545 (898)
T ss_pred cCCcccchh-hhcccCCCCcchhhhccccccc-----hhhhhhcc-----------cccCCccchhhhhhhhcCCchhhh
Confidence 888888777 8999999999999999999998 11111111 112267789999999999999999
Q ss_pred chhHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEE
Q 002012 647 QQSEREKLVMLEEVLHKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVR 726 (982)
Q Consensus 647 ~~~~~~~l~~l~~~l~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~ 726 (982)
...+.++|..|++.|.+.|+||++|+..|.++|.+++.|+.+| +|.+|+||.||+|+|||.+|++||.++|+++..|++
T Consensus 546 ~~~e~~~l~~L~~~L~~~V~gQ~eAv~aIa~AI~~sr~gl~~~-~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~Ir 624 (898)
T KOG1051|consen 546 AEAEAERLKKLEERLHERVIGQDEAVAAIAAAIRRSRAGLKDP-NPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIR 624 (898)
T ss_pred hhhHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhhhcccCCC-CCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEE
Confidence 9999999999999999999999999999999999999999988 899999999999999999999999999999999999
Q ss_pred EeccccccccccccccCCCCCccccccCCchhHHHhhCCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEeccc
Q 002012 727 IDMSEYMEKHSVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTN 806 (982)
Q Consensus 727 i~~s~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~ 806 (982)
+||++|++ +++++|.|+||+|++++++|++.+++.|++||+|||||++|+++++.|+++||+|+++|+.|++++|+|
T Consensus 625 iDmse~~e---vskligsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~GrltDs~Gr~Vd~kN 701 (898)
T KOG1051|consen 625 LDMSEFQE---VSKLIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDRGRLTDSHGREVDFKN 701 (898)
T ss_pred echhhhhh---hhhccCCCcccccchhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHhcCccccCCCcEeeccc
Confidence 99999987 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCChHHHHHhhh-----hcccchHHHHHHHHHHHHHHHH----hhcChHHHhccccccccCCCChhHHHHHHH
Q 002012 807 CVVIMTSNIGSHYILETLQ-----SVQDSKEAVYEVMKKQVVELAR----QTFRPEFLNRIDEYIVFQPLDSKEISKIVE 877 (982)
Q Consensus 807 ~iiI~tsn~~~~~i~~~~~-----~~~~~~~~~~~~~~~~~~~~~~----~~f~p~ll~Rid~ii~F~pl~~~~l~~il~ 877 (982)
+|||||+|.+...+..... .+.......+...+..+++.++ ..|+|+|++|+|.++.|.|++.+++.+|+.
T Consensus 702 ~I~IMTsn~~~~~i~~~~~~~~~l~~~~~~~~~~~~~k~~v~~~~~~~~~~~~r~Ef~nrid~i~lf~~l~~~~~~~i~~ 781 (898)
T KOG1051|consen 702 AIFIMTSNVGSSAIANDASLEEKLLDMDEKRGSYRLKKVQVSDAVRIYNKQFFRKEFLNRIDELDLNLPLDRDELIEIVN 781 (898)
T ss_pred eEEEEecccchHhhhcccccccccccchhhhhhhhhhhhhhhhhhhcccccccChHHhcccceeeeecccchhhHhhhhh
Confidence 9999999999886655322 1222233445667778889999 999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEEeecC
Q 002012 878 IQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAILKGDIKEEDSVIIDVDDS 952 (982)
Q Consensus 878 ~~l~~~~~~~~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~l~~~la~~~l~~~~~~~~~i~v~~~~~ 952 (982)
..+....+++...++.+.+++.+.+.+...+|++.||||+|++.|++.+.+.++..++ +.++++.++.|++.+.
T Consensus 782 ~~~~e~~~r~~~~~~~~~v~~~~~~~v~~~~~d~~ygAr~ikr~i~~~~~~~la~~~l-~ei~~~~~~~i~~~~~ 855 (898)
T KOG1051|consen 782 KQLTEIEKRLEERELLLLVTDRVDDKVLFKGYDFDYGARPIKRSIEERFENRLAEALL-GEVEDGLTERILVADG 855 (898)
T ss_pred hHHHHHHHHhhhhHHHHHHHHHHHhhhhhcCcChHHHhhHHHHHHHHHHHHHHhhhhe-eeecCCceEEEEeccc
Confidence 9999999999888888899999999999999999999999999999999999999999 8999999999999863
No 7
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=100.00 E-value=6.3e-103 Score=959.10 Aligned_cols=718 Identities=46% Similarity=0.742 Sum_probs=648.3
Q ss_pred ccHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhcCCCcHHHHHHHHcCCChHHHHHHHHHhhc-cCCCCCC-CCCCCcc
Q 002012 97 FTEKAWEGIVGAVDAARVNNQQVVETEHLMKALLEQKDGLARRILTKAGQDNTKVLQATEDFIS-KQPKVTG-ATSGPIV 174 (982)
Q Consensus 97 ft~~a~~~l~~A~~~A~~~~~~~v~~eHlLlaLl~~~~~~~~~iL~~~gv~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~ 174 (982)
||++++++|..|+++|++++|++|+|||||+|||++++ +.++|+++|+|++.+++++...++ ..|...+ ..+.+++
T Consensus 1 ~~~~a~~~L~~A~~~A~~~~h~~V~~EHLLlaLL~~~~--~~~iL~~~gid~~~l~~~l~~~l~~~~p~~~~~~~~~~~~ 78 (731)
T TIGR02639 1 ISEELERILDAALEEAKKRRHEFVTLEHILLALLFDSD--AIEILEECGGDVEALRKDLEDYLENNLPSITEENEADPEQ 78 (731)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCcCcHHHHHHHHHcCch--HHHHHHHcCCCHHHHHHHHHHHHhhcCCCCCCCCCCCCCc
Confidence 68999999999999999999999999999999999876 568999999999999999999887 4443222 1235789
Q ss_pred ChhhHHHHHHHHHHHHHcCCCccCHHHHHHHHhcC-CcccccccccccCCHHHHHHHHHh-hh--ccc-ccccCC--C--
Q 002012 175 GSNFGLLLSNAQRIKKEMEDDFVSVEHLLLAFLSD-DRFGRLLFNDIRLNEKDLKDAVKA-VR--GHQ-RVTDQN--P-- 245 (982)
Q Consensus 175 s~~~~~vl~~A~~~a~~~g~~~I~~ehLllall~~-~~~a~~lL~~~gi~~~~l~~~i~~-~~--~~~-~~~~~~--~-- 245 (982)
|+.++++|+.|+.+|..+|+++|+++|||+||+.+ ++.+.++|..+|++.+.+.+.+.. .. +.. ...... +
T Consensus 79 S~~lk~vL~~A~~~A~~~g~~~I~teHLLLALl~~~~~~a~~lL~~~gi~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 158 (731)
T TIGR02639 79 TVGVQRVLQRALLHVKSAGKKEIGIGDILVALFDEEDSHASYFLKSQGITRLDILEYISHGIPKDDGKNRDAEEAGKEEA 158 (731)
T ss_pred CHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHhcCcccHHHHHHHHcCCCHHHHHHHHHhhccccccccccccccccccc
Confidence 99999999999999999999999999999999954 567778999999999999888753 21 111 110000 1
Q ss_pred CchhHHHHHhhhhhHHHhhcCCCCCcccchHHHHHHHHHhccCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCC
Q 002012 246 EGKYQALEKYGNDLTELARSGKLDPVIGRDDEIRRCIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQN 325 (982)
Q Consensus 246 ~~~~~~l~~~~~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~ 325 (982)
....+.|.+|+.||++++++++++|+|||++++++++++|+++.++|+||+||||||||++|+++|+.+..+++|..+.+
T Consensus 159 ~~~~~~l~~~~~~l~~~~r~~~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~ 238 (731)
T TIGR02639 159 KKQEDALEKYTVDLTEKAKNGKIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKN 238 (731)
T ss_pred ccchhHHHHHhhhHHHHHhcCCCCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcC
Confidence 12356899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEecccccccccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCC-CchhhHHHHHHhhhcCCCeEEEEe
Q 002012 326 RKLISLDMASLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQ-SGAMDASNMLKPMLGRGELRCIGA 404 (982)
Q Consensus 326 ~~v~~l~~~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~-~~~~~~~~~L~~~le~g~i~vI~a 404 (982)
++++.+|++.+.++.+|.|+++.+++.+++++.. ++++||||||+|.+++++.+ .++.+++++|++.+++|.+.|||+
T Consensus 239 ~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~-~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g~i~~Iga 317 (731)
T TIGR02639 239 AKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEK-EPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSGKLRCIGS 317 (731)
T ss_pred CeEEEecHHHHhhhccccchHHHHHHHHHHHHhc-cCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCCCeEEEEe
Confidence 9999999999999999999999999999999876 46789999999999988754 345788999999999999999999
Q ss_pred cCchhHhhhhhcChHHHhccceEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCCcchhhHH
Q 002012 405 TTLNEYRNYIEKDPALERRFQQVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLPDKAIDL 484 (982)
Q Consensus 405 t~~~~~~~~~~~d~al~rRf~~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~p~~a~~l 484 (982)
||..+|.+++..|++|.|||+.|.|.+|+.+++..||+.+..+|+.+|++.++++++..++.+|.+|++++++|++|++|
T Consensus 318 Tt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~kai~l 397 (731)
T TIGR02639 318 TTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDKAIDV 397 (731)
T ss_pred cCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhccCCccchHHHHHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002012 485 VDEAAAKLKMEITSKPIELDEIDRAVLKLEMEKLSLKNDTDKASKERLSKLEHDLNSLKQKQKELNDQWSREKDLMSRIR 564 (982)
Q Consensus 485 ld~a~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~l~~~~~~~~~~~l~~~~~e~~~l~~~~~~l~~~~~~e~~~~~~~~ 564 (982)
+|+|++.+++.....
T Consensus 398 ld~a~a~~~~~~~~~----------------------------------------------------------------- 412 (731)
T TIGR02639 398 IDEAGASFRLRPKAK----------------------------------------------------------------- 412 (731)
T ss_pred HHHhhhhhhcCcccc-----------------------------------------------------------------
Confidence 999998766431100
Q ss_pred HHHHHHHHHHHHHHHHHhhhcHHHHHHhhhcchHHHHHHHHHHHHhHHHHHhcCCccccccCCHhHHHHHHHHhhCCCCc
Q 002012 565 SIKEEIDRVNLEMEAAERDYDLNRAAELKYGTMISLQRQLEEAEKNLSEFQKSGHSLLREEVTDLDIAEIVSKWTGIPLS 644 (982)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~gi~~~ 644 (982)
....|+..|+..+++.|+|+|+.
T Consensus 413 ---------------------------------------------------------~~~~v~~~~i~~~i~~~tgiP~~ 435 (731)
T TIGR02639 413 ---------------------------------------------------------KKANVSVKDIENVVAKMAHIPVK 435 (731)
T ss_pred ---------------------------------------------------------cccccCHHHHHHHHHHHhCCChh
Confidence 01247888999999999999999
Q ss_pred ccchhHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCce
Q 002012 645 SLQQSEREKLVMLEEVLHKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENAL 724 (982)
Q Consensus 645 ~~~~~~~~~l~~l~~~l~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~ 724 (982)
.+...+...+..+++.|.+.|+||+++++.|.+++.+.+.|+..|.+|.+++||+||||||||++|++||+.+ +.++
T Consensus 436 ~~~~~~~~~l~~l~~~l~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l---~~~~ 512 (731)
T TIGR02639 436 TVSVDDREKLKNLEKNLKAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL---GVHL 512 (731)
T ss_pred hhhhHHHHHHHHHHHHHhcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh---cCCe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998 5789
Q ss_pred EEEeccccccccccccccCCCCCccccccCCchhHHHhhCCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEec
Q 002012 725 VRIDMSEYMEKHSVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSF 804 (982)
Q Consensus 725 v~i~~s~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~ 804 (982)
+++||++|.+.+.+++++|+++||+|+++++.+++.++..|++||+|||||++++++++.|+++||+|.++|..|+.++|
T Consensus 513 ~~~d~se~~~~~~~~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~g~~vd~ 592 (731)
T TIGR02639 513 ERFDMSEYMEKHTVSRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADF 592 (731)
T ss_pred EEEeCchhhhcccHHHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhccCeeecCCCcccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEEecCCChHHHHHh-hhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHHHH
Q 002012 805 TNCVVIMTSNIGSHYILET-LQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRV 883 (982)
Q Consensus 805 ~~~iiI~tsn~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~ 883 (982)
+|++||+|||.+.+.+... +... .+.....+...+++.|+|+|++|||.+|+|.||+.+++.+|++..++++
T Consensus 593 ~~~iii~Tsn~g~~~~~~~~~~f~-------~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l 665 (731)
T TIGR02639 593 RNVILIMTSNAGASEMSKPPIGFG-------SENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDEL 665 (731)
T ss_pred CCCEEEECCCcchhhhhhccCCcc-------hhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHH
Confidence 9999999999998765431 1111 1223346778888999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEEe
Q 002012 884 KDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAILKGDIKEEDSVIIDV 949 (982)
Q Consensus 884 ~~~~~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~l~~~la~~~l~~~~~~~~~i~v~~ 949 (982)
.+++...++.+.++++++++|++.+|++++|||+|+++|++.+..+||+.++.+.+.+|+++.|++
T Consensus 666 ~~~l~~~~~~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~~~~l~~~~l~~~~~~~~~~~~~~ 731 (731)
T TIGR02639 666 SKQLNEKNIKLELTDDAKKYLAEKGYDEEFGARPLARVIQEEIKKPLSDEILFGKLKKGGSVKVDL 731 (731)
T ss_pred HHHHHhCCCeEEeCHHHHHHHHHhCCCcccCchHHHHHHHHHhHHHHHHHHHhCcCCCCCEEEEeC
Confidence 999988899999999999999999999999999999999999999999999999999999998863
No 8
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=100.00 E-value=3.3e-101 Score=927.31 Aligned_cols=719 Identities=41% Similarity=0.668 Sum_probs=643.7
Q ss_pred ccHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhcCCCcHHHHHHHHcCCChHHHHHHHHHhhcc-CCCCCC-C-CCCCc
Q 002012 97 FTEKAWEGIVGAVDAARVNNQQVVETEHLMKALLEQKDGLARRILTKAGQDNTKVLQATEDFISK-QPKVTG-A-TSGPI 173 (982)
Q Consensus 97 ft~~a~~~l~~A~~~A~~~~~~~v~~eHlLlaLl~~~~~~~~~iL~~~gv~~~~l~~~~~~~~~~-~~~~~~-~-~~~~~ 173 (982)
+|+.+..+|..|+.+|+.++|.+|++||||++||.+++ +..+|..+|++...+++.+...++. .|...+ . ...++
T Consensus 2 ~~~~~~~~l~~a~~~a~~~~~~~~~~~h~l~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (758)
T PRK11034 2 LNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPS--AREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQ 79 (758)
T ss_pred cCHHHHHHHHHHHHHHHHcCCCcchHHHHHHHHHcChh--HHHHHHHcCCCHHHHHHHHHHHHhhcCCcCCCCCCcCCcC
Confidence 78999999999999999999999999999999998865 7889999999999999999998873 232111 1 12467
Q ss_pred cChhhHHHHHHHHHHHHHcCCCccCHHHHHHHHhcC-CcccccccccccCCHHHHHHHHHhhhcc-ccc--c---cC--C
Q 002012 174 VGSNFGLLLSNAQRIKKEMEDDFVSVEHLLLAFLSD-DRFGRLLFNDIRLNEKDLKDAVKAVRGH-QRV--T---DQ--N 244 (982)
Q Consensus 174 ~s~~~~~vl~~A~~~a~~~g~~~I~~ehLllall~~-~~~a~~lL~~~gi~~~~l~~~i~~~~~~-~~~--~---~~--~ 244 (982)
++..++++|+.|+.+|..+++.+|+++|||+||+++ .+.+..+|..+|++...+...+..-... ... . .. .
T Consensus 80 ~~~~~~~~l~~a~~~~~~~~~~~i~~~~ll~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (758)
T PRK11034 80 PTLSFQRVLQRAVFHVQSSGRSEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGTRKDEPSQSSDPGSQPNS 159 (758)
T ss_pred CCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHhcCCcchHHHHHHHcCCCHHHHHHHHHhCCccccccccccccccccc
Confidence 888999999999999999999999999999999954 5677789999999988876665421110 000 0 00 0
Q ss_pred C--CchhHHHHHhhhhhHHHhhcCCCCCcccchHHHHHHHHHhccCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCC
Q 002012 245 P--EGKYQALEKYGNDLTELARSGKLDPVIGRDDEIRRCIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPET 322 (982)
Q Consensus 245 ~--~~~~~~l~~~~~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~ 322 (982)
. ......|++|+.+|++.++.++++++||+++++++++++|+++.++|+||+||||||||++|+++|+.+..+++|..
T Consensus 160 ~~~~~~~~~l~~~~~~l~~~a~~g~~~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~ 239 (758)
T PRK11034 160 EEQAGGEERMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEV 239 (758)
T ss_pred cccccchhHHHHHHHhHHHHHHcCCCCcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCch
Confidence 0 12346899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEecccccccccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCC-CchhhHHHHHHhhhcCCCeEE
Q 002012 323 LQNRKLISLDMASLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQ-SGAMDASNMLKPMLGRGELRC 401 (982)
Q Consensus 323 l~~~~v~~l~~~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~-~~~~~~~~~L~~~le~g~i~v 401 (982)
+.++.++.++++.+.+|.+|+|+++.+++.+++.+.. .+++||||||||.+.+.+.+ .+..++.|+|++++++|++.|
T Consensus 240 l~~~~~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l~~-~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i~v 318 (758)
T PRK11034 240 MADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQ-DTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRV 318 (758)
T ss_pred hcCCeEEeccHHHHhcccchhhhHHHHHHHHHHHHHh-cCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCeEE
Confidence 9999999999999999999999999999999999876 45679999999999988763 456889999999999999999
Q ss_pred EEecCchhHhhhhhcChHHHhccceEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCCcchh
Q 002012 402 IGATTLNEYRNYIEKDPALERRFQQVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLPDKA 481 (982)
Q Consensus 402 I~at~~~~~~~~~~~d~al~rRf~~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~p~~a 481 (982)
|++||.++|++++..|++|.|||+.|.|++|+.+++..||+++..+|+.+|++.++++++..++.+|.+|++++++|++|
T Consensus 319 IgATt~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKa 398 (758)
T PRK11034 319 IGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKA 398 (758)
T ss_pred EecCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhhhccCCccchHHHHHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002012 482 IDLVDEAAAKLKMEITSKPIELDEIDRAVLKLEMEKLSLKNDTDKASKERLSKLEHDLNSLKQKQKELNDQWSREKDLMS 561 (982)
Q Consensus 482 ~~lld~a~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~l~~~~~~~~~~~l~~~~~e~~~l~~~~~~l~~~~~~e~~~~~ 561 (982)
++++|+|++.+++.... .
T Consensus 399 idlldea~a~~~~~~~~------------------------~-------------------------------------- 416 (758)
T PRK11034 399 IDVIDEAGARARLMPVS------------------------K-------------------------------------- 416 (758)
T ss_pred HHHHHHHHHhhccCccc------------------------c--------------------------------------
Confidence 99999999876542000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcHHHHHHhhhcchHHHHHHHHHHHHhHHHHHhcCCccccccCCHhHHHHHHHHhhCC
Q 002012 562 RIRSIKEEIDRVNLEMEAAERDYDLNRAAELKYGTMISLQRQLEEAEKNLSEFQKSGHSLLREEVTDLDIAEIVSKWTGI 641 (982)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~gi 641 (982)
-...++..||.++++.|+|+
T Consensus 417 ------------------------------------------------------------~~~~v~~~~i~~v~~~~tgi 436 (758)
T PRK11034 417 ------------------------------------------------------------RKKTVNVADIESVVARIARI 436 (758)
T ss_pred ------------------------------------------------------------cccccChhhHHHHHHHHhCC
Confidence 00136678899999999999
Q ss_pred CCcccchhHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCC
Q 002012 642 PLSSLQQSEREKLVMLEEVLHKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTE 721 (982)
Q Consensus 642 ~~~~~~~~~~~~l~~l~~~l~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~ 721 (982)
|...+...+.+.+..+++.|.+.|+||+++++.|..++...+.|+..+.+|.+++||+||||||||++|+.+|+.+ +
T Consensus 437 p~~~~~~~~~~~l~~l~~~L~~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l---~ 513 (758)
T PRK11034 437 PEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL---G 513 (758)
T ss_pred ChhhhhhhHHHHHHHHHHHhcceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh---C
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998 5
Q ss_pred CceEEEeccccccccccccccCCCCCccccccCCchhHHHhhCCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcE
Q 002012 722 NALVRIDMSEYMEKHSVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRT 801 (982)
Q Consensus 722 ~~~v~i~~s~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~ 801 (982)
.+++++||++|.+.+.+++++|.++||+|+..++.+++.+++.|++||||||||++++++++.|+++||+|.++|..|+.
T Consensus 514 ~~~i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~G~ltd~~g~~ 593 (758)
T PRK11034 514 IELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRK 593 (758)
T ss_pred CCcEEeechhhcccccHHHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhcCeeecCCCce
Confidence 78999999999998889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecccEEEEEecCCChHHHHHh-hhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHH
Q 002012 802 VSFTNCVVIMTSNIGSHYILET-LQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQM 880 (982)
Q Consensus 802 ~~~~~~iiI~tsn~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l 880 (982)
++|+|++||+|||.+.+.+... +... . ......+.+.++..|+|+|++|||.+|+|+||+.+++.+|+...+
T Consensus 594 vd~rn~iiI~TsN~g~~~~~~~~~g~~--~-----~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l 666 (758)
T PRK11034 594 ADFRNVVLVMTTNAGVRETERKSIGLI--H-----QDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFI 666 (758)
T ss_pred ecCCCcEEEEeCCcCHHHHhhcccCcc--c-----chhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHH
Confidence 9999999999999997765432 1110 0 011234557788999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEEee
Q 002012 881 NRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAILKGDIKEEDSVIIDVD 950 (982)
Q Consensus 881 ~~~~~~~~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~l~~~la~~~l~~~~~~~~~i~v~~~ 950 (982)
.++.+++...++.+.++++++++|++.+|++.+|||+|+++|++.+.+++|+.++.+.+.+|+++.|+++
T Consensus 667 ~~~~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~l~~~la~~il~~~~~~~~~~~v~~~ 736 (758)
T PRK11034 667 VELQAQLDQKGVSLEVSQEARDWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVTVALD 736 (758)
T ss_pred HHHHHHHHHCCCCceECHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHHHhCcccCCCEEEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999997
No 9
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-40 Score=368.48 Aligned_cols=499 Identities=23% Similarity=0.327 Sum_probs=332.6
Q ss_pred CCCCcccchHHHHHHHHHhcc------------CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecc
Q 002012 267 KLDPVIGRDDEIRRCIQILSR------------RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMA 334 (982)
Q Consensus 267 ~l~~liG~~~~i~~l~~~L~~------------~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~ 334 (982)
.|.++=|.+..+..+.+++.- .+++++||.||||||||+||+++|.++ +.+++.+...
T Consensus 188 ~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel----------~vPf~~isAp 257 (802)
T KOG0733|consen 188 SFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL----------GVPFLSISAP 257 (802)
T ss_pred chhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc----------CCceEeecch
Confidence 577888888877666654321 577899999999999999999999999 9999999999
Q ss_pred cccccccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCc---hhhHHHHHHhhhc--------CCCeEEEE
Q 002012 335 SLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSG---AMDASNMLKPMLG--------RGELRCIG 403 (982)
Q Consensus 335 ~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~---~~~~~~~L~~~le--------~g~i~vI~ 403 (982)
++++| +-|+.|++++++|+++.. ..|||+||||||.+.+.+...+ ...+...|+..|+ ...|.|||
T Consensus 258 eivSG--vSGESEkkiRelF~~A~~-~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIg 334 (802)
T KOG0733|consen 258 EIVSG--VSGESEKKIRELFDQAKS-NAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIG 334 (802)
T ss_pred hhhcc--cCcccHHHHHHHHHHHhc-cCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEe
Confidence 99987 779999999999999987 6799999999999998876533 2334455556554 24689999
Q ss_pred ecCchhHhhhhhcChHHHh--ccc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCCcch
Q 002012 404 ATTLNEYRNYIEKDPALER--RFQ-QVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLPDK 480 (982)
Q Consensus 404 at~~~~~~~~~~~d~al~r--Rf~-~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~p~~ 480 (982)
|||+++ .+||+|+| ||+ .|.+..|+..++.+||+.+++.+..... -....++.+..+| ..++
T Consensus 335 ATnRPD-----slDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~-----~d~~qlA~lTPGf-----VGAD 399 (802)
T KOG0733|consen 335 ATNRPD-----SLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGD-----FDFKQLAKLTPGF-----VGAD 399 (802)
T ss_pred cCCCCc-----ccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCC-----cCHHHHHhcCCCc-----cchh
Confidence 999999 89999999 997 9999999999999999999987432221 2245677775554 4577
Q ss_pred hhHHHHHHHHHhhhh---ccCCccchHHHHHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002012 481 AIDLVDEAAAKLKME---ITSKPIELDEIDRAVLKLEMEKLSLKNDTDKASKERLSKLEHDLNSLKQKQKELNDQWSREK 557 (982)
Q Consensus 481 a~~lld~a~~~~~~~---~~~~~~~l~~~~~~~~~~~~e~~~l~~~~~~~~~~~l~~~~~e~~~l~~~~~~l~~~~~~e~ 557 (982)
...|+.+|+..+--. ..+.|... .....+. +..+++..+.- ++.
T Consensus 400 L~AL~~~Aa~vAikR~ld~~~~p~~~--------------~~~~ed~---~~~~~~~d~S~---i~~------------- 446 (802)
T KOG0733|consen 400 LMALCREAAFVAIKRILDQSSSPLTK--------------VPISEDS---SNKDAEEDQSS---IKI------------- 446 (802)
T ss_pred HHHHHHHHHHHHHHHHhhcccCcccc--------------CCccccc---cCCCccchhhh---hhc-------------
Confidence 888887777543211 01100000 0000000 00000000000 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHH---HHhhhcchHHHHHHHHHHHHhHHHHHhcCCccccccCCHhHHHHH
Q 002012 558 DLMSRIRSIKEEIDRVNLEMEAAERDYDLNRA---AELKYGTMISLQRQLEEAEKNLSEFQKSGHSLLREEVTDLDIAEI 634 (982)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~ 634 (982)
+ ..+++..++.+. .-+.++.-.+ .++. ..+ .+..+|..+.
T Consensus 447 ---~----------------~~~~~~~~ld~v~~~~i~~~~d~~S--~E~~--------------~~L--~i~~eDF~~A 489 (802)
T KOG0733|consen 447 ---T----------------SNAERPLELDRVVQDAILNNPDPLS--KELL--------------EGL--SIKFEDFEEA 489 (802)
T ss_pred ---C----------------CcccccccHHHHHHHHHHhCCCCcC--hHHh--------------ccc--eecHHHHHHH
Confidence 0 000000000000 0000000000 0000 000 1333333333
Q ss_pred HHHhhCCCCcccchhHHHHHHHHHHhhhcccccchHHHHHHHHHHHH--------HhcCCCCCCCCCceEEeecCCCCch
Q 002012 635 VSKWTGIPLSSLQQSEREKLVMLEEVLHKRVIGQDIAVKSVADAIRR--------SRAGLSDPARPIASFMFMGPTGVGK 706 (982)
Q Consensus 635 ~~~~~gi~~~~~~~~~~~~l~~l~~~l~~~iiGq~~a~~~l~~~i~~--------~~~g~~~~~~p~~~lLf~Gp~GtGK 706 (982)
+... ..+ ..++-|....+.-|.+|-|++++..++..+|.+ .+.|+.. |. .+|++|||||||
T Consensus 490 l~~i---QPS----akREGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~---Ps-GvLL~GPPGCGK 558 (802)
T KOG0733|consen 490 LSKI---QPS----AKREGFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDA---PS-GVLLCGPPGCGK 558 (802)
T ss_pred HHhc---Ccc----hhcccceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCC---CC-ceEEeCCCCccH
Confidence 3321 111 113334444556678888888888888888743 2234432 34 499999999999
Q ss_pred HHHHHHHHHHhcCCCCceEEEeccccccccccccccCCCCCccccccC--CchhHHHhhCCCeEEEEccccccCH-----
Q 002012 707 TELGKALADFLFNTENALVRIDMSEYMEKHSVSRLVGAPPGYVGYEEG--GQLTEVVRRRPYSVVLFDEIEKAHQ----- 779 (982)
Q Consensus 707 T~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l~g~~~g~vg~~~~--~~l~~~l~~~~~~Vl~lDEidkl~~----- 779 (982)
|.+|+++|+.. +.+|+.+.+.++... |||..+. ++++...+.+.+|||||||+|.+-|
T Consensus 559 TLlAKAVANEa---g~NFisVKGPELlNk------------YVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~ 623 (802)
T KOG0733|consen 559 TLLAKAVANEA---GANFISVKGPELLNK------------YVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDE 623 (802)
T ss_pred HHHHHHHhhhc---cCceEeecCHHHHHH------------HhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCC
Confidence 99999999986 899999999998654 7776654 5678888888999999999999854
Q ss_pred ------HHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChH
Q 002012 780 ------DVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPE 853 (982)
Q Consensus 780 ------~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ 853 (982)
.++|.||.-||... +-.++.+|.+||.+.- ++|+
T Consensus 624 ~s~~s~RvvNqLLtElDGl~---------~R~gV~viaATNRPDi-------------------------------IDpA 663 (802)
T KOG0733|consen 624 GSSVSSRVVNQLLTELDGLE---------ERRGVYVIAATNRPDI-------------------------------IDPA 663 (802)
T ss_pred CchhHHHHHHHHHHHhcccc---------cccceEEEeecCCCcc-------------------------------cchh
Confidence 38999999998532 1246889999997642 5566
Q ss_pred HH--hccccccccCCCChhHHHHHHHHHHHHHHHHHHhCCCCccCCHHH-HHHHHhcCCCCCCCchHHHHHHHHHHHHHH
Q 002012 854 FL--NRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEA-VTLLGILGFDPNFGARPVKRVIQQLVENEI 930 (982)
Q Consensus 854 ll--~Rid~ii~F~pl~~~~l~~il~~~l~~~~~~~~~~~~~l~i~~~a-~~~L~~~~~~~~~gaR~L~~~i~~~l~~~l 930 (982)
++ +|+|.+++..+++.++...|++...+. ...-+++++ ++.|+....-.+|.+.+|.-+|++.-..+|
T Consensus 664 iLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn---------~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL 734 (802)
T KOG0733|consen 664 ILRPGRLDKLLYVGLPNAEERVAILKTITKN---------TKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILAL 734 (802)
T ss_pred hcCCCccCceeeecCCCHHHHHHHHHHHhcc---------CCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHHHH
Confidence 66 899999999999999999998877653 123344433 455665432235666789999999888888
Q ss_pred HHHHHcCC
Q 002012 931 AVAILKGD 938 (982)
Q Consensus 931 a~~~l~~~ 938 (982)
-+.+.+.+
T Consensus 735 ~~~~~~~~ 742 (802)
T KOG0733|consen 735 RESLFEID 742 (802)
T ss_pred HHHHhhcc
Confidence 88777543
No 10
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.2e-36 Score=337.60 Aligned_cols=408 Identities=24% Similarity=0.364 Sum_probs=301.9
Q ss_pred CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccccccccccHHHHHHHHHHHHHhcCCCeEEE
Q 002012 288 RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILF 367 (982)
Q Consensus 288 ~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~ 367 (982)
+.++++|++||||+|||.+++++|++. ++.++.++...++. ++.|+.+..++..|.++.....|.|+|
T Consensus 216 ~~prg~Ll~gppg~Gkt~l~~aVa~e~----------~a~~~~i~~peli~--k~~gEte~~LR~~f~~a~k~~~psii~ 283 (693)
T KOG0730|consen 216 KPPRGLLLYGPPGTGKTFLVRAVANEY----------GAFLFLINGPELIS--KFPGETESNLRKAFAEALKFQVPSIIF 283 (693)
T ss_pred CCCCCccccCCCCCChHHHHHHHHHHh----------CceeEecccHHHHH--hcccchHHHHHHHHHHHhccCCCeeEe
Confidence 577899999999999999999999998 89999999999984 588999999999999998754489999
Q ss_pred EccchhhhhCCCCC-c-hhhHHHHHHhhhc----CCCeEEEEecCchhHhhhhhcChHHHh-ccc-eEEecCCCHHHHHH
Q 002012 368 IDELHTIIGAGNQS-G-AMDASNMLKPMLG----RGELRCIGATTLNEYRNYIEKDPALER-RFQ-QVFCDQPSVENTIS 439 (982)
Q Consensus 368 IDEi~~l~~~~~~~-~-~~~~~~~L~~~le----~g~i~vI~at~~~~~~~~~~~d~al~r-Rf~-~i~i~~Ps~~e~~~ 439 (982)
|||++.+.+.+... + ...+...|+.+++ .++++||++||++. .+||+++| ||+ .+.+..|+..++..
T Consensus 284 IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~-----sld~alRRgRfd~ev~IgiP~~~~Rld 358 (693)
T KOG0730|consen 284 IDELDALCPKREGADDVESRVVSQLLTLLDGLKPDAKVIVLAATNRPD-----SLDPALRRGRFDREVEIGIPGSDGRLD 358 (693)
T ss_pred HHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCcCcEEEEEecCCcc-----ccChhhhcCCCcceeeecCCCchhHHH
Confidence 99999999765432 2 3444555555554 58999999999999 89999998 997 99999999999999
Q ss_pred HHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCCcchhhHHHHHHHHHhhhhccCCccchHHHHHHHHHHHHHHhh
Q 002012 440 ILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLPDKAIDLVDEAAAKLKMEITSKPIELDEIDRAVLKLEMEKLS 519 (982)
Q Consensus 440 IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~p~~a~~lld~a~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~ 519 (982)
|++.+.+++ +.. ++..+..++..+.+|. ..+...++.+|....-..
T Consensus 359 Il~~l~k~~----~~~-~~~~l~~iA~~thGyv-----GaDL~~l~~ea~~~~~r~------------------------ 404 (693)
T KOG0730|consen 359 ILRVLTKKM----NLL-SDVDLEDIAVSTHGYV-----GADLAALCREASLQATRR------------------------ 404 (693)
T ss_pred HHHHHHHhc----CCc-chhhHHHHHHHccchh-----HHHHHHHHHHHHHHHhhh------------------------
Confidence 999998884 333 5677778888866664 355555555444221100
Q ss_pred ccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHhhhcchHH
Q 002012 520 LKNDTDKASKERLSKLEHDLNSLKQKQKELNDQWSREKDLMSRIRSIKEEIDRVNLEMEAAERDYDLNRAAELKYGTMIS 599 (982)
Q Consensus 520 l~~~~~~~~~~~l~~~~~e~~~l~~~~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 599 (982)
T Consensus 405 -------------------------------------------------------------------------------- 404 (693)
T KOG0730|consen 405 -------------------------------------------------------------------------------- 404 (693)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHhHHHHHhcCCccccccCCHhHHHHHHHHhhCCCCcccchhHHHHHHHHHHhhhcccccchHHHHHHHHHH
Q 002012 600 LQRQLEEAEKNLSEFQKSGHSLLREEVTDLDIAEIVSKWTGIPLSSLQQSEREKLVMLEEVLHKRVIGQDIAVKSVADAI 679 (982)
Q Consensus 600 ~~~~l~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~gi~~~~~~~~~~~~l~~l~~~l~~~iiGq~~a~~~l~~~i 679 (982)
....++.+.. .+.+..+++++ ....+.-|++|-|+++.+..|.+++
T Consensus 405 ---~~~~~~~A~~------------~i~psa~Re~~-------------------ve~p~v~W~dIGGlE~lK~elq~~V 450 (693)
T KOG0730|consen 405 ---TLEIFQEALM------------GIRPSALREIL-------------------VEMPNVSWDDIGGLEELKRELQQAV 450 (693)
T ss_pred ---hHHHHHHHHh------------cCCchhhhhee-------------------ccCCCCChhhccCHHHHHHHHHHHH
Confidence 0000000000 01111122211 1122334577888888888888887
Q ss_pred HH--------HhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccccccccCCCCCcccc
Q 002012 680 RR--------SRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRLVGAPPGYVGY 751 (982)
Q Consensus 680 ~~--------~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l~g~~~g~vg~ 751 (982)
.. .+.|+. .|. .+||+||||||||++|+++|... +.+|+.+.+.++..+ |+|.
T Consensus 451 ~~p~~~pe~F~r~Gi~---ppk-GVLlyGPPGC~KT~lAkalAne~---~~nFlsvkgpEL~sk------------~vGe 511 (693)
T KOG0730|consen 451 EWPLKHPEKFARFGIS---PPK-GVLLYGPPGCGKTLLAKALANEA---GMNFLSVKGPELFSK------------YVGE 511 (693)
T ss_pred hhhhhchHHHHHhcCC---CCc-eEEEECCCCcchHHHHHHHhhhh---cCCeeeccCHHHHHH------------hcCc
Confidence 43 333443 333 49999999999999999999987 889999999987543 5554
Q ss_pred ccC--CchhHHHhhCCCeEEEEccccccCH-----------HHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCChH
Q 002012 752 EEG--GQLTEVVRRRPYSVVLFDEIEKAHQ-----------DVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSH 818 (982)
Q Consensus 752 ~~~--~~l~~~l~~~~~~Vl~lDEidkl~~-----------~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~ 818 (982)
.+. +.++...+.+.++||||||||.+.. .+++.||..||... ..++++||++||.+..
T Consensus 512 SEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e---------~~k~V~ViAATNRpd~ 582 (693)
T KOG0730|consen 512 SERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLE---------ALKNVLVIAATNRPDM 582 (693)
T ss_pred hHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHccccc---------ccCcEEEEeccCChhh
Confidence 443 4678888888889999999998743 37888888887422 1268999999998653
Q ss_pred HHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHh--ccccccccCCCChhHHHHHHHHHHHHHHHHHHhCCCCccC
Q 002012 819 YILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLN--RIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHY 896 (982)
Q Consensus 819 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~--Rid~ii~F~pl~~~~l~~il~~~l~~~~~~~~~~~~~l~i 896 (982)
+++++++ |||.+|++++++.+...+|++.+.++ ..+
T Consensus 583 -------------------------------ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kk-----------mp~ 620 (693)
T KOG0730|consen 583 -------------------------------IDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKK-----------MPF 620 (693)
T ss_pred -------------------------------cCHHHcCCcccceeEeecCccHHHHHHHHHHHHhc-----------CCC
Confidence 6788886 99999999999999999999998876 445
Q ss_pred CHH-HHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHH
Q 002012 897 TKE-AVTLLGILGFDPNFGARPVKRVIQQLVENEIAV 932 (982)
Q Consensus 897 ~~~-a~~~L~~~~~~~~~gaR~L~~~i~~~l~~~la~ 932 (982)
+++ -++.|++. ...|.+++|..+++.....++-+
T Consensus 621 ~~~vdl~~La~~--T~g~SGAel~~lCq~A~~~a~~e 655 (693)
T KOG0730|consen 621 SEDVDLEELAQA--TEGYSGAEIVAVCQEAALLALRE 655 (693)
T ss_pred CccccHHHHHHH--hccCChHHHHHHHHHHHHHHHHH
Confidence 555 35677764 23456689999999866665544
No 11
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=4.3e-32 Score=334.92 Aligned_cols=459 Identities=23% Similarity=0.358 Sum_probs=301.7
Q ss_pred cCCCCCcccchHHHHHHHHHhcc-------------CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEE
Q 002012 265 SGKLDPVIGRDDEIRRCIQILSR-------------RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISL 331 (982)
Q Consensus 265 ~~~l~~liG~~~~i~~l~~~L~~-------------~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l 331 (982)
.-+++++.|.++.++.+.+.+.- ..+.++||+||||||||++|+++|+.+ +..++.+
T Consensus 174 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~----------~~~~i~i 243 (733)
T TIGR01243 174 KVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA----------GAYFISI 243 (733)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh----------CCeEEEE
Confidence 34678899999988887765421 345689999999999999999999988 7789999
Q ss_pred ecccccccccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCC-c--hhhHHHHHHhhhc----CCCeEEEEe
Q 002012 332 DMASLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQS-G--AMDASNMLKPMLG----RGELRCIGA 404 (982)
Q Consensus 332 ~~~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~-~--~~~~~~~L~~~le----~g~i~vI~a 404 (982)
+...+.+ ++.|+.+..++.+|+.+.. +.++||||||+|.+.+.+... + ...+.+.|+..++ ++.+.+|++
T Consensus 244 ~~~~i~~--~~~g~~~~~l~~lf~~a~~-~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~a 320 (733)
T TIGR01243 244 NGPEIMS--KYYGESEERLREIFKEAEE-NAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGA 320 (733)
T ss_pred ecHHHhc--ccccHHHHHHHHHHHHHHh-cCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEee
Confidence 9888774 4788999999999998876 567899999999998765432 1 2345566666664 678999999
Q ss_pred cCchhHhhhhhcChHHHh--ccc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccC-hHHHHHHHHHhhhhhccCCCcch
Q 002012 405 TTLNEYRNYIEKDPALER--RFQ-QVFCDQPSVENTISILRGLRERYELHHGVKIS-DSALVSAAVLADRYITERFLPDK 480 (982)
Q Consensus 405 t~~~~~~~~~~~d~al~r--Rf~-~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~-~~~l~~~~~~s~r~i~~~~~p~~ 480 (982)
||..+ .+|+++++ ||. .+.+..|+.+++.+||+..... ..+. +..+..++..+.+| .+.+
T Consensus 321 tn~~~-----~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~------~~l~~d~~l~~la~~t~G~-----~gad 384 (733)
T TIGR01243 321 TNRPD-----ALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRN------MPLAEDVDLDKLAEVTHGF-----VGAD 384 (733)
T ss_pred cCChh-----hcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcC------CCCccccCHHHHHHhCCCC-----CHHH
Confidence 99988 68999998 896 8999999999999999855443 2232 33456666665544 3444
Q ss_pred hhHHHHHHHHHhhhhccCCccchHHHHHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002012 481 AIDLVDEAAAKLKMEITSKPIELDEIDRAVLKLEMEKLSLKNDTDKASKERLSKLEHDLNSLKQKQKELNDQWSREKDLM 560 (982)
Q Consensus 481 a~~lld~a~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~l~~~~~~~~~~~l~~~~~e~~~l~~~~~~l~~~~~~e~~~~ 560 (982)
...++.+|+..+..... . ......+..
T Consensus 385 l~~l~~~a~~~al~r~~-------------~-----~~~~~~~~~----------------------------------- 411 (733)
T TIGR01243 385 LAALAKEAAMAALRRFI-------------R-----EGKINFEAE----------------------------------- 411 (733)
T ss_pred HHHHHHHHHHHHHHHHh-------------h-----ccccccccc-----------------------------------
Confidence 44554444432110000 0 000000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHhhhcchHHHHHHHHHHHHhHHHHHhcCCccccccCCHhHHHHHHHHhhC
Q 002012 561 SRIRSIKEEIDRVNLEMEAAERDYDLNRAAELKYGTMISLQRQLEEAEKNLSEFQKSGHSLLREEVTDLDIAEIVSKWTG 640 (982)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~g 640 (982)
.++. .......++..++...+.....
T Consensus 412 -----------------------------------~i~~-------------------~~~~~~~v~~~df~~Al~~v~p 437 (733)
T TIGR01243 412 -----------------------------------EIPA-------------------EVLKELKVTMKDFMEALKMVEP 437 (733)
T ss_pred -----------------------------------cccc-------------------hhcccccccHHHHHHHHhhccc
Confidence 0000 0000001222233222222110
Q ss_pred CCCcccchhHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHhcCC----CCCCCCCceEEeecCCCCchHHHHHHHHHH
Q 002012 641 IPLSSLQQSEREKLVMLEEVLHKRVIGQDIAVKSVADAIRRSRAGL----SDPARPIASFMFMGPTGVGKTELGKALADF 716 (982)
Q Consensus 641 i~~~~~~~~~~~~l~~l~~~l~~~iiGq~~a~~~l~~~i~~~~~g~----~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~ 716 (982)
+.+ ++.+......-+.+|.|++.+++.|.+.+......- ...-++...+||+||||||||++|+++|..
T Consensus 438 ---s~~----~~~~~~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e 510 (733)
T TIGR01243 438 ---SAI----REVLVEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATE 510 (733)
T ss_pred ---ccc----chhhccccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 000 011111223345789999999999988875421100 001122335999999999999999999998
Q ss_pred hcCCCCceEEEeccccccccccccccCCCCCccccccC--CchhHHHhhCCCeEEEEccccccCH------------HHH
Q 002012 717 LFNTENALVRIDMSEYMEKHSVSRLVGAPPGYVGYEEG--GQLTEVVRRRPYSVVLFDEIEKAHQ------------DVF 782 (982)
Q Consensus 717 l~~~~~~~v~i~~s~~~~~~~~~~l~g~~~g~vg~~~~--~~l~~~l~~~~~~Vl~lDEidkl~~------------~~~ 782 (982)
+ +.+|+.++++++... |+|..+. +.++...+...++||||||||.+.+ .+.
T Consensus 511 ~---~~~fi~v~~~~l~~~------------~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~ 575 (733)
T TIGR01243 511 S---GANFIAVRGPEILSK------------WVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIV 575 (733)
T ss_pred c---CCCEEEEehHHHhhc------------ccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHH
Confidence 7 788999998876432 4444332 3466777788889999999998732 366
Q ss_pred HHHHHhhhcCceecCCCcEEecccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHH--hcccc
Q 002012 783 NILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFL--NRIDE 860 (982)
Q Consensus 783 ~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll--~Rid~ 860 (982)
+.|+..|+.- ....+++||+|||.... ++|+++ +|||.
T Consensus 576 ~~lL~~ldg~---------~~~~~v~vI~aTn~~~~-------------------------------ld~allRpgRfd~ 615 (733)
T TIGR01243 576 NQLLTEMDGI---------QELSNVVVIAATNRPDI-------------------------------LDPALLRPGRFDR 615 (733)
T ss_pred HHHHHHhhcc---------cCCCCEEEEEeCCChhh-------------------------------CCHhhcCCCccce
Confidence 7788877731 11247899999997543 677887 59999
Q ss_pred ccccCCCChhHHHHHHHHHHHHHHHHHHhCCCCccCCHH-HHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHH
Q 002012 861 YIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKE-AVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAI 934 (982)
Q Consensus 861 ii~F~pl~~~~l~~il~~~l~~~~~~~~~~~~~l~i~~~-a~~~L~~~~~~~~~gaR~L~~~i~~~l~~~la~~~ 934 (982)
+|.|++++.++..+|+....+. ..++++ -++.|+.. ...|.+.+|+.+++.....++-+.+
T Consensus 616 ~i~v~~Pd~~~R~~i~~~~~~~-----------~~~~~~~~l~~la~~--t~g~sgadi~~~~~~A~~~a~~~~~ 677 (733)
T TIGR01243 616 LILVPPPDEEARKEIFKIHTRS-----------MPLAEDVDLEELAEM--TEGYTGADIEAVCREAAMAALRESI 677 (733)
T ss_pred EEEeCCcCHHHHHHHHHHHhcC-----------CCCCccCCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999998765443 122222 24566654 3356678999999887777765543
No 12
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.97 E-value=7.6e-30 Score=287.72 Aligned_cols=279 Identities=22% Similarity=0.373 Sum_probs=211.0
Q ss_pred HHHHHHhhhcccccchHHHHHHHHHHHHHhcCCCC----CC-----CCCceEEeecCCCCchHHHHHHHHHHhcCCCCce
Q 002012 654 LVMLEEVLHKRVIGQDIAVKSVADAIRRSRAGLSD----PA-----RPIASFMFMGPTGVGKTELGKALADFLFNTENAL 724 (982)
Q Consensus 654 l~~l~~~l~~~iiGq~~a~~~l~~~i~~~~~g~~~----~~-----~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~ 724 (982)
...+++.|.+.|+||+++++.+..++.+.+.++.. +. .+..++||+||||||||++|++||+.+ +.+|
T Consensus 68 p~~i~~~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l---~~pf 144 (413)
T TIGR00382 68 PKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARIL---NVPF 144 (413)
T ss_pred HHHHHHHhcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhc---CCCe
Confidence 35678889999999999999999999665555432 11 123579999999999999999999987 6788
Q ss_pred EEEeccccccccccccccCCCCCccccccCCchhHHHhh-------CCCeEEEEccccccCH--------------HHHH
Q 002012 725 VRIDMSEYMEKHSVSRLVGAPPGYVGYEEGGQLTEVVRR-------RPYSVVLFDEIEKAHQ--------------DVFN 783 (982)
Q Consensus 725 v~i~~s~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~-------~~~~Vl~lDEidkl~~--------------~~~~ 783 (982)
..++++.+ .+++|+|++..+.+...+.. +.++||||||||++++ ++|+
T Consensus 145 ~~~da~~L-----------~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~ 213 (413)
T TIGR00382 145 AIADATTL-----------TEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQ 213 (413)
T ss_pred EEechhhc-----------cccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHH
Confidence 88887664 23568887666656665543 4457999999999987 6999
Q ss_pred HHHHhhhcCceec---CCCcEEecccEEEEEecCC---------ChHHHHHh-hh-----hcccch--HHH-HHHHHHHH
Q 002012 784 ILLQLLDDGRITD---SQGRTVSFTNCVVIMTSNI---------GSHYILET-LQ-----SVQDSK--EAV-YEVMKKQV 842 (982)
Q Consensus 784 ~Ll~~le~g~~~d---~~g~~~~~~~~iiI~tsn~---------~~~~i~~~-~~-----~~~~~~--~~~-~~~~~~~~ 842 (982)
.||++|| |.+++ ..|+.++|.++++|+|+|. |.+.+.+. +. ...... ... ...++...
T Consensus 214 ~LL~iLe-G~~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~ 292 (413)
T TIGR00382 214 ALLKIIE-GTVANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVE 292 (413)
T ss_pred HHHHHhh-ccceecccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHH
Confidence 9999995 88876 5688999999999999998 55544432 11 110100 000 11222222
Q ss_pred H-HHHHhhcChHHHhccccccccCCCChhHHHHHHHHHH----HHHHHHHHhCCCCccCCHHHHHHHHhcCCCCCCCchH
Q 002012 843 V-ELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQM----NRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARP 917 (982)
Q Consensus 843 ~-~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l----~~~~~~~~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~ 917 (982)
. +.++..|.|+|++|+|.+++|.||+.+++.+|+...+ +++.+.+...++.+.++++++++|++.+|++.+|||+
T Consensus 293 ~~dl~~~g~~PEflgRld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~ 372 (413)
T TIGR00382 293 PEDLVKFGLIPEFIGRLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARG 372 (413)
T ss_pred HHHHHHHhhHHHHhCCCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchH
Confidence 2 3445669999999999999999999999999999864 4455556667999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCEEEEEee
Q 002012 918 VKRVIQQLVENEIAVAILKGDIKEEDSVIIDVD 950 (982)
Q Consensus 918 L~~~i~~~l~~~la~~~l~~~~~~~~~i~v~~~ 950 (982)
|++++++.+...+.+.--. +....+.|+-+
T Consensus 373 Lr~iie~~l~~~m~e~p~~---~~~~~v~i~~~ 402 (413)
T TIGR00382 373 LRSIVEGLLLDVMFDLPSL---EDLEKVVITKE 402 (413)
T ss_pred HHHHHHHhhHHHHhhCCCC---CCCcEEEECHH
Confidence 9999999999988774322 22345666544
No 13
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5.1e-28 Score=275.81 Aligned_cols=452 Identities=21% Similarity=0.305 Sum_probs=295.5
Q ss_pred cccchHHHHHHHHHhccCC---------CCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEeccccccccc
Q 002012 271 VIGRDDEIRRCIQILSRRT---------KNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGTC 341 (982)
Q Consensus 271 liG~~~~i~~l~~~L~~~~---------~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~~ 341 (982)
..+++..+..+.+++..+. ...+||.|+||+|||++++++|.++ +.+++.+||.++.+.
T Consensus 403 ~~~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~l----------g~h~~evdc~el~~~-- 470 (953)
T KOG0736|consen 403 PPGLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASEL----------GLHLLEVDCYELVAE-- 470 (953)
T ss_pred CccchHHHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHh----------CCceEeccHHHHhhc--
Confidence 4556667777777776532 2347888999999999999999999 999999999999965
Q ss_pred ccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhc-------CCCeEEEEecCchhHhhhh
Q 002012 342 YRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLG-------RGELRCIGATTLNEYRNYI 414 (982)
Q Consensus 342 ~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le-------~g~i~vI~at~~~~~~~~~ 414 (982)
..+..+.++...|..++. ..++|||+-.+|.+.-....+....+...+...+. .+.++||++|+..+
T Consensus 471 s~~~~etkl~~~f~~a~~-~~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~----- 544 (953)
T KOG0736|consen 471 SASHTETKLQAIFSRARR-CSPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIE----- 544 (953)
T ss_pred ccchhHHHHHHHHHHHhh-cCceEEEEeccceeeecCCCchhHHHHHHHHHHHhcccccCCCCceEEEEeccccc-----
Confidence 457788899999998887 57899999999988744433333333333433332 46889999999988
Q ss_pred hcChHHHhccc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccChH-HHHHHHHHhhhhhccCCCcchhhHHHHHHHHHh
Q 002012 415 EKDPALERRFQ-QVFCDQPSVENTISILRGLRERYELHHGVKISDS-ALVSAAVLADRYITERFLPDKAIDLVDEAAAKL 492 (982)
Q Consensus 415 ~~d~al~rRf~-~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~-~l~~~~~~s~r~i~~~~~p~~a~~lld~a~~~~ 492 (982)
.+++.+++-|- .|.++.|+.+|+.+||+.+.... .+.++ .+..++.. ...+.+.+.-.+++...
T Consensus 545 ~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~------~~n~~v~~k~~a~~-----t~gfs~~~L~~l~~~~s--- 610 (953)
T KOG0736|consen 545 DLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHL------PLNQDVNLKQLARK-----TSGFSFGDLEALVAHSS--- 610 (953)
T ss_pred cCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhcc------ccchHHHHHHHHHh-----cCCCCHHHHHHHhcCch---
Confidence 78999999874 99999999999999999887752 23322 23334444 22333443333322110
Q ss_pred hhhccCCccchHHHHHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002012 493 KMEITSKPIELDEIDRAVLKLEMEKLSLKNDTDKASKERLSKLEHDLNSLKQKQKELNDQWSREKDLMSRIRSIKEEIDR 572 (982)
Q Consensus 493 ~~~~~~~~~~l~~~~~~~~~~~~e~~~l~~~~~~~~~~~l~~~~~e~~~l~~~~~~l~~~~~~e~~~~~~~~~~~~~~~~ 572 (982)
++ .+.+++... +..- +
T Consensus 611 ----------~~-----------------------~~~~i~~~~------------l~g~-------------~------ 626 (953)
T KOG0736|consen 611 ----------LA-----------------------AKTRIKNKG------------LAGG-------------L------ 626 (953)
T ss_pred ----------HH-----------------------HHHHHHhhc------------cccc-------------c------
Confidence 00 000000000 0000 0
Q ss_pred HHHHHHHHHhhhcHHHHHHhhhcchHHHHHHHHHHHHhHHHHHhcCCccccccCCHhHHHHHHHHh-------hCCCCcc
Q 002012 573 VNLEMEAAERDYDLNRAAELKYGTMISLQRQLEEAEKNLSEFQKSGHSLLREEVTDLDIAEIVSKW-------TGIPLSS 645 (982)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~-------~gi~~~~ 645 (982)
+.+.+.. .-+....++++|+...+++. .|-|
T Consensus 627 ------~~~~~~~---------------------------------~~~~~~~l~~edf~kals~~~~~fs~aiGAP--- 664 (953)
T KOG0736|consen 627 ------QEEDEGE---------------------------------LCAAGFLLTEEDFDKALSRLQKEFSDAIGAP--- 664 (953)
T ss_pred ------hhccccc---------------------------------cccccceecHHHHHHHHHHHHHhhhhhcCCC---
Confidence 0000000 00001233444444444321 1221
Q ss_pred cchhHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHhcC---CCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCC
Q 002012 646 LQQSEREKLVMLEEVLHKRVIGQDIAVKSVADAIRRSRAG---LSDPARPIASFMFMGPTGVGKTELGKALADFLFNTEN 722 (982)
Q Consensus 646 ~~~~~~~~l~~l~~~l~~~iiGq~~a~~~l~~~i~~~~~g---~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~ 722 (982)
.+.+.-|++|-|-++++..|.+.|+..... +...-++...+||+||||||||.+||++|..+ ..
T Consensus 665 ----------KIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEc---sL 731 (953)
T KOG0736|consen 665 ----------KIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATEC---SL 731 (953)
T ss_pred ----------CCCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhc---ee
Confidence 122345789999999999999999652110 00112222349999999999999999999987 78
Q ss_pred ceEEEeccccccccccccccCCCCCccccccC--CchhHHHhhCCCeEEEEccccccCHH-------------HHHHHHH
Q 002012 723 ALVRIDMSEYMEKHSVSRLVGAPPGYVGYEEG--GQLTEVVRRRPYSVVLFDEIEKAHQD-------------VFNILLQ 787 (982)
Q Consensus 723 ~~v~i~~s~~~~~~~~~~l~g~~~g~vg~~~~--~~l~~~l~~~~~~Vl~lDEidkl~~~-------------~~~~Ll~ 787 (982)
.|+.+.+.|+.+. |+|..+. +.+++..+.+.+|||||||+|.+.|. ++..||.
T Consensus 732 ~FlSVKGPELLNM------------YVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLA 799 (953)
T KOG0736|consen 732 NFLSVKGPELLNM------------YVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLA 799 (953)
T ss_pred eEEeecCHHHHHH------------HhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHH
Confidence 8999998887543 6776654 46888999999999999999999764 7888888
Q ss_pred hhhcCceecCCCcEEecccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHH--hccccccccC
Q 002012 788 LLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFL--NRIDEYIVFQ 865 (982)
Q Consensus 788 ~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll--~Rid~ii~F~ 865 (982)
-||. +.|+ +...+.||.+||.+.- ++|+|+ +|||..++..
T Consensus 800 ELDg--ls~~-----~s~~VFViGATNRPDL-------------------------------LDpALLRPGRFDKLvyvG 841 (953)
T KOG0736|consen 800 ELDG--LSDS-----SSQDVFVIGATNRPDL-------------------------------LDPALLRPGRFDKLVYVG 841 (953)
T ss_pred Hhhc--ccCC-----CCCceEEEecCCCccc-------------------------------cChhhcCCCccceeEEec
Confidence 8874 2221 2245788889997531 566666 8999888888
Q ss_pred CCChhH-HHHHHHHHHHHHHHHHHhCCCCccCCHHH-HHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 002012 866 PLDSKE-ISKIVEIQMNRVKDRLKQKKIDLHYTKEA-VTLLGILGFDPNFGARPVKRVIQQLVENEIAVAIL 935 (982)
Q Consensus 866 pl~~~~-l~~il~~~l~~~~~~~~~~~~~l~i~~~a-~~~L~~~~~~~~~gaR~L~~~i~~~l~~~la~~~l 935 (982)
|-+.++ -..+++..=++ +.+++++ +..+++. .+++|.+.++-.++-.....++.+-+-
T Consensus 842 ~~~d~esk~~vL~AlTrk-----------FkLdedVdL~eiAk~-cp~~~TGADlYsLCSdA~l~AikR~i~ 901 (953)
T KOG0736|consen 842 PNEDAESKLRVLEALTRK-----------FKLDEDVDLVEIAKK-CPPNMTGADLYSLCSDAMLAAIKRTIH 901 (953)
T ss_pred CCccHHHHHHHHHHHHHH-----------ccCCCCcCHHHHHhh-CCcCCchhHHHHHHHHHHHHHHHHHHH
Confidence 876644 34444433333 4455554 3455655 678887788888888888777766543
No 14
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.96 E-value=1.6e-28 Score=279.02 Aligned_cols=280 Identities=24% Similarity=0.372 Sum_probs=205.8
Q ss_pred HHHHHhhhcccccchHHHHHHHHHHHHHhcCCC-------CCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEE
Q 002012 655 VMLEEVLHKRVIGQDIAVKSVADAIRRSRAGLS-------DPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRI 727 (982)
Q Consensus 655 ~~l~~~l~~~iiGq~~a~~~l~~~i~~~~~g~~-------~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i 727 (982)
..+.+.|.+.|+||+++++.+..++......+. ....+..++||+||||||||++|++||+.+ +.+|+.+
T Consensus 63 ~~i~~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l---~~pf~~i 139 (412)
T PRK05342 63 KEIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL---DVPFAIA 139 (412)
T ss_pred HHHHHHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh---CCCceec
Confidence 456777888899999999999888854322221 112345679999999999999999999988 7899999
Q ss_pred eccccccccccccccCCCCCccccccCCchhHH-------HhhCCCeEEEEccccccCH--------------HHHHHHH
Q 002012 728 DMSEYMEKHSVSRLVGAPPGYVGYEEGGQLTEV-------VRRRPYSVVLFDEIEKAHQ--------------DVFNILL 786 (982)
Q Consensus 728 ~~s~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~-------l~~~~~~Vl~lDEidkl~~--------------~~~~~Ll 786 (982)
|++.+.. .+|+|.+....+... +..+.++||||||||++++ ++|+.||
T Consensus 140 d~~~l~~-----------~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL 208 (412)
T PRK05342 140 DATTLTE-----------AGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALL 208 (412)
T ss_pred chhhccc-----------CCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHH
Confidence 9987642 467776554444433 3356789999999999975 4999999
Q ss_pred HhhhcCce--ecCCCcEEecccEEEEEecCC---------ChHHHHHh-h-----hhcccchH----HHHHHHHHHH--H
Q 002012 787 QLLDDGRI--TDSQGRTVSFTNCVVIMTSNI---------GSHYILET-L-----QSVQDSKE----AVYEVMKKQV--V 843 (982)
Q Consensus 787 ~~le~g~~--~d~~g~~~~~~~~iiI~tsn~---------~~~~i~~~-~-----~~~~~~~~----~~~~~~~~~~--~ 843 (982)
++||...+ ++..|+..++.++++|+|+|. +.+.+.+. + ........ .....+.+.+ .
T Consensus 209 ~~Leg~~~~v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~ 288 (412)
T PRK05342 209 KILEGTVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPE 288 (412)
T ss_pred HHHhcCeEEeCCCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHH
Confidence 99984433 445677777888888888887 44434332 1 11100000 0012222222 2
Q ss_pred HHHHhhcChHHHhccccccccCCCChhHHHHHHHH----HHHHHHHHHHhCCCCccCCHHHHHHHHhcCCCCCCCchHHH
Q 002012 844 ELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEI----QMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVK 919 (982)
Q Consensus 844 ~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~----~l~~~~~~~~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~ 919 (982)
+.++..|.|||++|+|.+++|.||+.+++.+|+.. .++++.+.+...++.+.++++++++|++.+|++.+|||+|+
T Consensus 289 dL~~~gf~PEflgRld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lr 368 (412)
T PRK05342 289 DLIKFGLIPEFIGRLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLR 368 (412)
T ss_pred HHHHHhhhHHHhCCCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHH
Confidence 34555699999999999999999999999999984 56666677778899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCEEEEEeec
Q 002012 920 RVIQQLVENEIAVAILKGDIKEEDSVIIDVDD 951 (982)
Q Consensus 920 ~~i~~~l~~~la~~~l~~~~~~~~~i~v~~~~ 951 (982)
++|++.+...+.+..... ....+.|+.+.
T Consensus 369 riie~~l~~~~~~~p~~~---~~~~v~I~~~~ 397 (412)
T PRK05342 369 SILEEILLDVMFELPSRE---DVEKVVITKEV 397 (412)
T ss_pred HHHHHHhHHHHHhccccC---CCceEEECHHH
Confidence 999999999997644322 23456666653
No 15
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=4e-26 Score=257.86 Aligned_cols=429 Identities=20% Similarity=0.251 Sum_probs=272.7
Q ss_pred CCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccccccccccHHHHHHHHHHHHHhcCCCeEEEE
Q 002012 289 TKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFI 368 (982)
Q Consensus 289 ~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~I 368 (982)
...|++|.||+|+|||.|++++++++... ..+++..++|+.+... + ...+.+.+..+|.++.. .+|.|+++
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~k~------~~~hv~~v~Cs~l~~~-~-~e~iQk~l~~vfse~~~-~~PSiIvL 500 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYSKD------LIAHVEIVSCSTLDGS-S-LEKIQKFLNNVFSEALW-YAPSIIVL 500 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhccc------cceEEEEEechhccch-h-HHHHHHHHHHHHHHHHh-hCCcEEEE
Confidence 45689999999999999999999998532 2678888898887633 1 34455556677777765 67899999
Q ss_pred ccchhhhhCCCCCchh------hHHHH----HHhhhcCC-CeEEEEecCchhHhhhhhcChHHHh--ccc-eEEecCCCH
Q 002012 369 DELHTIIGAGNQSGAM------DASNM----LKPMLGRG-ELRCIGATTLNEYRNYIEKDPALER--RFQ-QVFCDQPSV 434 (982)
Q Consensus 369 DEi~~l~~~~~~~~~~------~~~~~----L~~~le~g-~i~vI~at~~~~~~~~~~~d~al~r--Rf~-~i~i~~Ps~ 434 (982)
|++|.+.++..+.+++ ....+ ++.++.++ .+.+|++..... .++|-|.+ +|+ .+.++.|..
T Consensus 501 Ddld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~q-----tl~~~L~s~~~Fq~~~~L~ap~~ 575 (952)
T KOG0735|consen 501 DDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQ-----TLNPLLVSPLLFQIVIALPAPAV 575 (952)
T ss_pred cchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhh-----hcChhhcCccceEEEEecCCcch
Confidence 9999999743322221 12223 33444444 458888887766 67777776 687 889999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCCcchhhHHHHHHHHHhhhhccCCc-cchHHHHHHHHHH
Q 002012 435 ENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLPDKAIDLVDEAAAKLKMEITSKP-IELDEIDRAVLKL 513 (982)
Q Consensus 435 ~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~p~~a~~lld~a~~~~~~~~~~~~-~~l~~~~~~~~~~ 513 (982)
.++.+||+.+..+- ...+..+.++.++... .+|.+.+..-+++.|...+-.+..+.- ..+.
T Consensus 576 ~~R~~IL~~~~s~~----~~~~~~~dLd~ls~~T-----EGy~~~DL~ifVeRai~~a~leris~~~kllt--------- 637 (952)
T KOG0735|consen 576 TRRKEILTTIFSKN----LSDITMDDLDFLSVKT-----EGYLATDLVIFVERAIHEAFLERISNGPKLLT--------- 637 (952)
T ss_pred hHHHHHHHHHHHhh----hhhhhhHHHHHHHHhc-----CCccchhHHHHHHHHHHHHHHHHhccCcccch---------
Confidence 99999999887762 2334455566666664 445567777777777754332111000 0000
Q ss_pred HHHHhhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHhh
Q 002012 514 EMEKLSLKNDTDKASKERLSKLEHDLNSLKQKQKELNDQWSREKDLMSRIRSIKEEIDRVNLEMEAAERDYDLNRAAELK 593 (982)
Q Consensus 514 ~~e~~~l~~~~~~~~~~~l~~~~~e~~~l~~~~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 593 (982)
+...+++-+++..
T Consensus 638 ------------------------------------------------------------ke~f~ksL~~F~P------- 650 (952)
T KOG0735|consen 638 ------------------------------------------------------------KELFEKSLKDFVP------- 650 (952)
T ss_pred ------------------------------------------------------------HHHHHHHHHhcCh-------
Confidence 0000000000000
Q ss_pred hcchHHHHHHHHHHHHhHHHHHhcCCccccccCCHhHHHHHHHHhhCCCCcccchhHHHHHHHHHHhhhcccccchHHHH
Q 002012 594 YGTMISLQRQLEEAEKNLSEFQKSGHSLLREEVTDLDIAEIVSKWTGIPLSSLQQSEREKLVMLEEVLHKRVIGQDIAVK 673 (982)
Q Consensus 594 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~gi~~~~~~~~~~~~l~~l~~~l~~~iiGq~~a~~ 673 (982)
. .+.|+...+-. ..-+.+|-|..++++
T Consensus 651 -----------------------------------~-------aLR~ik~~k~t-----------gi~w~digg~~~~k~ 677 (952)
T KOG0735|consen 651 -----------------------------------L-------ALRGIKLVKST-----------GIRWEDIGGLFEAKK 677 (952)
T ss_pred -----------------------------------H-------HhhhccccccC-----------CCCceecccHHHHHH
Confidence 0 00111111000 012366777777777
Q ss_pred HHHHHHHHHhcCC----CCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccccccccCCCCCcc
Q 002012 674 SVADAIRRSRAGL----SDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRLVGAPPGYV 749 (982)
Q Consensus 674 ~l~~~i~~~~~g~----~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l~g~~~g~v 749 (982)
.+.+.|.+...-- ..|-+-...+||+||||||||.+|.++|... +..|+.+.+.++.. + |+
T Consensus 678 ~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~---~~~fisvKGPElL~-----K-------yI 742 (952)
T KOG0735|consen 678 VLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNS---NLRFISVKGPELLS-----K-------YI 742 (952)
T ss_pred HHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhC---CeeEEEecCHHHHH-----H-------Hh
Confidence 7777775432110 0122222359999999999999999999986 78899999988743 3 44
Q ss_pred ccccC--CchhHHHhhCCCeEEEEccccccCH-----------HHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCC
Q 002012 750 GYEEG--GQLTEVVRRRPYSVVLFDEIEKAHQ-----------DVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIG 816 (982)
Q Consensus 750 g~~~~--~~l~~~l~~~~~~Vl~lDEidkl~~-----------~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~ 816 (982)
|..+. +.+++..+.+.+||+||||+|.+.| .+.|.||.-||.-+- +..+.|+++|..+
T Consensus 743 GaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Eg---------l~GV~i~aaTsRp 813 (952)
T KOG0735|consen 743 GASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEG---------LDGVYILAATSRP 813 (952)
T ss_pred cccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccc---------cceEEEEEecCCc
Confidence 44433 4678888889999999999999865 399999999984221 1224455544433
Q ss_pred hHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHH--hccccccccCCCChhHHHHHHHHHHHHHHHHHHhCCCCc
Q 002012 817 SHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFL--NRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDL 894 (982)
Q Consensus 817 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll--~Rid~ii~F~pl~~~~l~~il~~~l~~~~~~~~~~~~~l 894 (982)
.- ++|+|+ +|+|..|.-+++++.+..+|++..-+. +
T Consensus 814 dl-------------------------------iDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s-----------~ 851 (952)
T KOG0735|consen 814 DL-------------------------------IDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNS-----------L 851 (952)
T ss_pred cc-------------------------------cCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhc-----------c
Confidence 21 566666 899998888899999988888765543 2
Q ss_pred cCC-HHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHcC
Q 002012 895 HYT-KEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAILKG 937 (982)
Q Consensus 895 ~i~-~~a~~~L~~~~~~~~~gaR~L~~~i~~~l~~~la~~~l~~ 937 (982)
..+ +.-++.++.. ..+|.+.+|+..+...=..++-+++.+.
T Consensus 852 ~~~~~vdl~~~a~~--T~g~tgADlq~ll~~A~l~avh~~l~~~ 893 (952)
T KOG0735|consen 852 LKDTDVDLECLAQK--TDGFTGADLQSLLYNAQLAAVHEILKRE 893 (952)
T ss_pred CCccccchHHHhhh--cCCCchhhHHHHHHHHHHHHHHHHHHhc
Confidence 233 3345777764 3345557888888875555554444443
No 16
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.95 E-value=1.2e-25 Score=274.80 Aligned_cols=295 Identities=20% Similarity=0.310 Sum_probs=224.9
Q ss_pred HHHHhHHHHHhcCCccccccCCHhHHHHHHHHhhCCCCcccchhHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHhcC
Q 002012 606 EAEKNLSEFQKSGHSLLREEVTDLDIAEIVSKWTGIPLSSLQQSEREKLVMLEEVLHKRVIGQDIAVKSVADAIRRSRAG 685 (982)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~gi~~~~~~~~~~~~l~~l~~~l~~~iiGq~~a~~~l~~~i~~~~~g 685 (982)
..++++.+++..++.+ ..-..+.+++++.+.+||...+.. ..++...++.|.++.+|++.+++.|.+.+.....
T Consensus 270 ~~~~e~~~~~~~~~~~----~e~~~~~~yl~~~~~~pw~~~~~~-~~~~~~~~~~l~~~~~g~~~vK~~i~~~l~~~~~- 343 (784)
T PRK10787 270 KAEAELQKLKMMSPMS----AEATVVRGYIDWMVQVPWNARSKV-KKDLRQAQEILDTDHYGLERVKDRILEYLAVQSR- 343 (784)
T ss_pred HHHHHHHHHHhCCCCC----chHHHHHHHHHHHHhCCCCCCCcc-cccHHHHHHHhhhhccCHHHHHHHHHHHHHHHHh-
Confidence 3445555555443322 233458899999999999887654 5678889999999999999999999887763321
Q ss_pred CCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccccccccCCCCCccccccCCchhHHHhhC-
Q 002012 686 LSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRLVGAPPGYVGYEEGGQLTEVVRRR- 764 (982)
Q Consensus 686 ~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~~- 764 (982)
......+ .++|+||||+|||++++.+|+.+ +.++++++++...+ ...+.|....|+|...++ +...+..+
T Consensus 344 ~~~~~g~--~i~l~GppG~GKTtl~~~ia~~l---~~~~~~i~~~~~~d---~~~i~g~~~~~~g~~~G~-~~~~l~~~~ 414 (784)
T PRK10787 344 VNKIKGP--ILCLVGPPGVGKTSLGQSIAKAT---GRKYVRMALGGVRD---EAEIRGHRRTYIGSMPGK-LIQKMAKVG 414 (784)
T ss_pred cccCCCc--eEEEECCCCCCHHHHHHHHHHHh---CCCEEEEEcCCCCC---HHHhccchhccCCCCCcH-HHHHHHhcC
Confidence 1111222 49999999999999999999988 67899999877643 344566666677665554 55555543
Q ss_pred -CCeEEEEccccccCHHH----HHHHHHhhhcC---ceecCC-CcEEecccEEEEEecCCChHHHHHhhhhcccchHHHH
Q 002012 765 -PYSVVLFDEIEKAHQDV----FNILLQLLDDG---RITDSQ-GRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVY 835 (982)
Q Consensus 765 -~~~Vl~lDEidkl~~~~----~~~Ll~~le~g---~~~d~~-g~~~~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~ 835 (982)
.+.||+|||||+++++. +++|+++||.+ .+.|.. .-.+|+++++||+|+|.-.
T Consensus 415 ~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~~------------------ 476 (784)
T PRK10787 415 VKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMN------------------ 476 (784)
T ss_pred CCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCCC------------------
Confidence 35699999999999875 59999999975 456654 3357889999999998531
Q ss_pred HHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHH-HHHHHHHhCCCCccCCHHHHHHHHhcCCCCCCC
Q 002012 836 EVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMN-RVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFG 914 (982)
Q Consensus 836 ~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~-~~~~~~~~~~~~l~i~~~a~~~L~~~~~~~~~g 914 (982)
++|+|++|| .+|+|.+|+.+++.+|++.++. +..++....+..+.++++++++|++ +|.+.+|
T Consensus 477 --------------i~~aLl~R~-~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~-~yt~e~G 540 (784)
T PRK10787 477 --------------IPAPLLDRM-EVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIR-YYTREAG 540 (784)
T ss_pred --------------CCHHHhcce-eeeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHH-hCCcccC
Confidence 789999999 5899999999999999999985 3344433344578999999999997 7999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEEeecC
Q 002012 915 ARPVKRVIQQLVENEIAVAILKGDIKEEDSVIIDVDDS 952 (982)
Q Consensus 915 aR~L~~~i~~~l~~~la~~~l~~~~~~~~~i~v~~~~~ 952 (982)
+|+|++.|++.+...+++.++.+.. ..+.|+.++.
T Consensus 541 aR~LeR~I~~i~r~~l~~~~~~~~~---~~v~v~~~~~ 575 (784)
T PRK10787 541 VRSLEREISKLCRKAVKQLLLDKSL---KHIEINGDNL 575 (784)
T ss_pred CcHHHHHHHHHHHHHHHHHHhcCCC---ceeeecHHHH
Confidence 9999999999999999998887643 3466665543
No 17
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.95 E-value=2.6e-25 Score=275.06 Aligned_cols=268 Identities=22% Similarity=0.344 Sum_probs=206.8
Q ss_pred HhHHHHHHHHhhCCCCcccchhHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchH
Q 002012 628 DLDIAEIVSKWTGIPLSSLQQSEREKLVMLEEVLHKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKT 707 (982)
Q Consensus 628 ~~~i~~~~~~~~gi~~~~~~~~~~~~l~~l~~~l~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT 707 (982)
...+.+++++++++||.+.... ...+..+++.|.++++||+.+++.|.+.+....... .+..+ +++|+||||||||
T Consensus 286 ~~~~~~yl~~~~~ip~~~~~~~-~~~~~~~~~~l~~~~~G~~~~k~~i~~~~~~~~~~~-~~~~~--~lll~GppG~GKT 361 (775)
T TIGR00763 286 FTVTRNYLDWLTDLPWGKYSKE-NLDLKRAKEILDEDHYGLKKVKERILEYLAVQKLRG-KMKGP--ILCLVGPPGVGKT 361 (775)
T ss_pred HHHHHHHHHHHHCCCCcccccc-hhhHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhc-CCCCc--eEEEECCCCCCHH
Confidence 3457889999999999987666 667889999999999999999999998765443211 11222 5999999999999
Q ss_pred HHHHHHHHHhcCCCCceEEEeccccccccccccccCCCCCccccccCCchhHHHhhC--CCeEEEEccccccCHH----H
Q 002012 708 ELGKALADFLFNTENALVRIDMSEYMEKHSVSRLVGAPPGYVGYEEGGQLTEVVRRR--PYSVVLFDEIEKAHQD----V 781 (982)
Q Consensus 708 ~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~~--~~~Vl~lDEidkl~~~----~ 781 (982)
++|++||+.+ +.++++++++.+.+ ...+.|....|+|...+. +.+.+..+ .+.||||||||++++. .
T Consensus 362 ~lAk~iA~~l---~~~~~~i~~~~~~~---~~~i~g~~~~~~g~~~g~-i~~~l~~~~~~~~villDEidk~~~~~~~~~ 434 (775)
T TIGR00763 362 SLGKSIAKAL---NRKFVRFSLGGVRD---EAEIRGHRRTYVGAMPGR-IIQGLKKAKTKNPLFLLDEIDKIGSSFRGDP 434 (775)
T ss_pred HHHHHHHHHh---cCCeEEEeCCCccc---HHHHcCCCCceeCCCCch-HHHHHHHhCcCCCEEEEechhhcCCccCCCH
Confidence 9999999998 67899999876533 344556666677765544 44444432 3459999999999764 4
Q ss_pred HHHHHHhhhc---CceecCC-CcEEecccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhc
Q 002012 782 FNILLQLLDD---GRITDSQ-GRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNR 857 (982)
Q Consensus 782 ~~~Ll~~le~---g~~~d~~-g~~~~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~R 857 (982)
.++|+++||. +.+.|.. +..+++++++||+|||.... ++|+|++|
T Consensus 435 ~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~~-------------------------------i~~~L~~R 483 (775)
T TIGR00763 435 ASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSIDT-------------------------------IPRPLLDR 483 (775)
T ss_pred HHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCCchh-------------------------------CCHHHhCC
Confidence 5899999985 5677764 66788999999999997432 78999999
Q ss_pred cccccccCCCChhHHHHHHHHHHHHHHHHHHhCCC---CccCCHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHH
Q 002012 858 IDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKI---DLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAI 934 (982)
Q Consensus 858 id~ii~F~pl~~~~l~~il~~~l~~~~~~~~~~~~---~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~l~~~la~~~ 934 (982)
| .+|.|++|+.++..+|+..++.. +.+...++ .+.++++++.+|++ +|...+|+|+|++.+++++... +..+
T Consensus 484 ~-~vi~~~~~~~~e~~~I~~~~l~~--~~~~~~~l~~~~~~~~~~~l~~i~~-~~~~e~g~R~l~r~i~~~~~~~-~~~~ 558 (775)
T TIGR00763 484 M-EVIELSGYTEEEKLEIAKKYLIP--KALEDHGLKPDELKITDEALLLLIK-YYTREAGVRNLERQIEKICRKA-AVKL 558 (775)
T ss_pred e-eEEecCCCCHHHHHHHHHHHHHH--HHHHHcCCCcceEEECHHHHHHHHH-hcChhcCChHHHHHHHHHHHHH-HHHH
Confidence 9 58999999999999999988753 22333343 47899999999998 5999999999999999988777 4445
Q ss_pred H-cCCCCCC
Q 002012 935 L-KGDIKEE 942 (982)
Q Consensus 935 l-~~~~~~~ 942 (982)
+ .+....+
T Consensus 559 ~~~~~~~~~ 567 (775)
T TIGR00763 559 VEQGEKKKS 567 (775)
T ss_pred HhccCcccC
Confidence 5 3444333
No 18
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2.4e-24 Score=246.56 Aligned_cols=280 Identities=23% Similarity=0.338 Sum_probs=217.8
Q ss_pred HHHhHHHHHhcCCccccccCCHhHHHHHHHHhhCCCCcccchhHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHhcCC
Q 002012 607 AEKNLSEFQKSGHSLLREEVTDLDIAEIVSKWTGIPLSSLQQSEREKLVMLEEVLHKRVIGQDIAVKSVADAIRRSRAGL 686 (982)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~gi~~~~~~~~~~~~l~~l~~~l~~~iiGq~~a~~~l~~~i~~~~~g~ 686 (982)
.++++++++..++.+ .....+++++.|.+.+||..-+. +..++...++.|.++-.|.+.+++.|.+.+.-....
T Consensus 272 ~~~El~kL~~m~~~S----aE~~ViRnYlDwll~lPW~~~sk-~~~Dl~~a~~iLd~dHYGLekVKeRIlEyLAV~~l~- 345 (782)
T COG0466 272 AEKELKKLETMSPMS----AEATVIRNYLDWLLDLPWGKRSK-DKLDLKKAEKILDKDHYGLEKVKERILEYLAVQKLT- 345 (782)
T ss_pred HHHHHHHHhcCCCCC----chHHHHHHHHHHHHhCCCccccc-hhhhHHHHHHHhcccccCchhHHHHHHHHHHHHHHh-
Confidence 345566666554432 23345999999999999987665 467889999999999999999999999987533221
Q ss_pred CCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccccccccCCCCCccccccCCchhHHHhhCC-
Q 002012 687 SDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRLVGAPPGYVGYEEGGQLTEVVRRRP- 765 (982)
Q Consensus 687 ~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~~~- 765 (982)
..-..|+ ++|+||||+|||++++.||+.+ +..|+++..+.+.+ .+.+-|+...|+|.-.|+ +.+.++++.
T Consensus 346 ~~~kGpI--LcLVGPPGVGKTSLgkSIA~al---~RkfvR~sLGGvrD---EAEIRGHRRTYIGamPGr-IiQ~mkka~~ 416 (782)
T COG0466 346 KKLKGPI--LCLVGPPGVGKTSLGKSIAKAL---GRKFVRISLGGVRD---EAEIRGHRRTYIGAMPGK-IIQGMKKAGV 416 (782)
T ss_pred ccCCCcE--EEEECCCCCCchhHHHHHHHHh---CCCEEEEecCcccc---HHHhccccccccccCChH-HHHHHHHhCC
Confidence 1123344 8999999999999999999999 89999999998844 456778888888887776 556666543
Q ss_pred -CeEEEEccccccCHH----HHHHHHHhhhc---CceecCC-CcEEecccEEEEEecCCChHHHHHhhhhcccchHHHHH
Q 002012 766 -YSVVLFDEIEKAHQD----VFNILLQLLDD---GRITDSQ-GRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYE 836 (982)
Q Consensus 766 -~~Vl~lDEidkl~~~----~~~~Ll~~le~---g~~~d~~-g~~~~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~ 836 (982)
+.|++|||||||..+ -..+||.+||. ..|.|.+ .-..|+++++||+|+|.-..
T Consensus 417 ~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~t------------------ 478 (782)
T COG0466 417 KNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDT------------------ 478 (782)
T ss_pred cCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCcccc------------------
Confidence 569999999999765 56899999984 3455544 44578899999999996432
Q ss_pred HHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHHHHHHHHHhCC---CCccCCHHHHHHHHhcCCCCCC
Q 002012 837 VMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKK---IDLHYTKEAVTLLGILGFDPNF 913 (982)
Q Consensus 837 ~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~~~~~~~~~---~~l~i~~~a~~~L~~~~~~~~~ 913 (982)
++.+|++|+ ++|.+..|+.++-.+|+..+|-. +.+...| -.+.++++|+..|..+ |...-
T Consensus 479 -------------IP~PLlDRM-EiI~lsgYt~~EKl~IAk~~LiP--k~~~~~gL~~~el~i~d~ai~~iI~~-YTREA 541 (782)
T COG0466 479 -------------IPAPLLDRM-EVIRLSGYTEDEKLEIAKRHLIP--KQLKEHGLKKGELTITDEAIKDIIRY-YTREA 541 (782)
T ss_pred -------------CChHHhcce-eeeeecCCChHHHHHHHHHhcch--HHHHHcCCCccceeecHHHHHHHHHH-HhHhh
Confidence 788999999 79999999999999999998743 2223333 4589999999999987 88888
Q ss_pred CchHHHHHHHHHHHHHHHHHHHcC
Q 002012 914 GARPVKRVIQQLVENEIAVAILKG 937 (982)
Q Consensus 914 gaR~L~~~i~~~l~~~la~~~l~~ 937 (982)
|+|.|+|.|.+++....-+ ++.+
T Consensus 542 GVR~LeR~i~ki~RK~~~~-i~~~ 564 (782)
T COG0466 542 GVRNLEREIAKICRKAAKK-ILLK 564 (782)
T ss_pred hhhHHHHHHHHHHHHHHHH-HHhc
Confidence 9999999999966665544 5544
No 19
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.92 E-value=2.7e-25 Score=223.99 Aligned_cols=155 Identities=57% Similarity=0.908 Sum_probs=132.1
Q ss_pred CCCceEEeecCCCCchHHHHHHHHHHhc-CCCCceEEEecccccc----ccccccccCCCCCccccccCCchhHHHhhCC
Q 002012 691 RPIASFMFMGPTGVGKTELGKALADFLF-NTENALVRIDMSEYME----KHSVSRLVGAPPGYVGYEEGGQLTEVVRRRP 765 (982)
Q Consensus 691 ~p~~~lLf~Gp~GtGKT~lA~~la~~l~-~~~~~~v~i~~s~~~~----~~~~~~l~g~~~g~vg~~~~~~l~~~l~~~~ 765 (982)
+|..++||+||+|||||++|++||+.++ +...+++++||++|.. .+.+.+++|.+++|+++.+.+
T Consensus 1 ~p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~v~~~~~g---------- 70 (171)
T PF07724_consen 1 RPKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDDVESSVSKLLGSPPGYVGAEEGG---------- 70 (171)
T ss_dssp S-SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTTCHHHHHHHT----------
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccchHHhhhhhhhhcccceeeccchh----------
Confidence 5778899999999999999999999999 7889999999999998 777888999999998866554
Q ss_pred CeEEEEccccccCH-----------HHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCChHHHHHhhhhcccchHHH
Q 002012 766 YSVVLFDEIEKAHQ-----------DVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAV 834 (982)
Q Consensus 766 ~~Vl~lDEidkl~~-----------~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~ 834 (982)
|||||||||+++ .+|+.||++||+|+++|..|+.++++|++||||||.+........... ...
T Consensus 71 --VVllDEidKa~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~~~~~~~~~~~----~~~ 144 (171)
T PF07724_consen 71 --VVLLDEIDKAHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGAEEIIDASRSG----EAI 144 (171)
T ss_dssp --EEEEETGGGCSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSSTHHHHHCHHHC----TCC
T ss_pred --hhhhHHHhhccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccccchhhhhhccc----ccc
Confidence 999999999999 999999999999999999999999999999999999987666531111 112
Q ss_pred HHHHHHHHHHHHHhhcChHHHhccccc
Q 002012 835 YEVMKKQVVELARQTFRPEFLNRIDEY 861 (982)
Q Consensus 835 ~~~~~~~~~~~~~~~f~p~ll~Rid~i 861 (982)
.......+.+.++.+|.|||++|||.+
T Consensus 145 ~~~~~~~~~~~~~~~f~pEf~~Ri~~i 171 (171)
T PF07724_consen 145 EQEQEEQIRDLVEYGFRPEFLGRIDVI 171 (171)
T ss_dssp HHHHCHHHHHHHHHTS-HHHHTTSSEE
T ss_pred HHHHHHHHHHHHHcCCCHHHHccCCcC
Confidence 344556677888999999999999853
No 20
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.5e-23 Score=230.13 Aligned_cols=189 Identities=22% Similarity=0.332 Sum_probs=136.1
Q ss_pred HHHhccCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccccccccccHHHHHHHHHHHHHhc-
Q 002012 282 IQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGTCYRGDFEKRLKAVLKEVTKS- 360 (982)
Q Consensus 282 ~~~L~~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~~~~g~~e~~l~~l~~~~~~~- 360 (982)
++.|.-.+..++|||||||||||.+|+-|+..+ ++.-|....| ..+. .+|.|+.|++++.+|..+.+.
T Consensus 248 ie~lGi~HVKGiLLyGPPGTGKTLiARqIGkML-NArePKIVNG--------PeIL--~KYVGeSE~NvR~LFaDAEeE~ 316 (744)
T KOG0741|consen 248 IEQLGIKHVKGILLYGPPGTGKTLIARQIGKML-NAREPKIVNG--------PEIL--NKYVGESEENVRKLFADAEEEQ 316 (744)
T ss_pred HHHcCccceeeEEEECCCCCChhHHHHHHHHHh-cCCCCcccCc--------HHHH--HHhhcccHHHHHHHHHhHHHHH
Confidence 334444667789999999999999999999988 3333333323 2333 479999999999999887742
Q ss_pred ------CCCeEEEEccchhhhhCCCCC-c----hhhHHHHHHhhhc----CCCeEEEEecCchhHhhhhhcChHHHh--c
Q 002012 361 ------NGQIILFIDELHTIIGAGNQS-G----AMDASNMLKPMLG----RGELRCIGATTLNEYRNYIEKDPALER--R 423 (982)
Q Consensus 361 ------~~~~IL~IDEi~~l~~~~~~~-~----~~~~~~~L~~~le----~g~i~vI~at~~~~~~~~~~~d~al~r--R 423 (982)
.+=-|+++||||.+++.+.+. | ...+.|.|+.-++ -.+|.|||.||+.+ -+|.||+| |
T Consensus 317 r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~D-----lIDEALLRPGR 391 (744)
T KOG0741|consen 317 RRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNRKD-----LIDEALLRPGR 391 (744)
T ss_pred HhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCchh-----hHHHHhcCCCc
Confidence 122499999999999875432 2 2456677776665 36899999999999 58999999 9
Q ss_pred cc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCCcchhhHHHHHHHHHh
Q 002012 424 FQ-QVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLPDKAIDLVDEAAAKL 492 (982)
Q Consensus 424 f~-~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~p~~a~~lld~a~~~~ 492 (982)
|+ .+++..|+..-+.+||+....++.. ++.--++-.+..++.++..| ..+....|+..|.+.+
T Consensus 392 lEVqmEIsLPDE~gRlQIl~IHT~rMre-~~~l~~dVdl~elA~lTKNf-----SGAEleglVksA~S~A 455 (744)
T KOG0741|consen 392 LEVQMEISLPDEKGRLQILKIHTKRMRE-NNKLSADVDLKELAALTKNF-----SGAELEGLVKSAQSFA 455 (744)
T ss_pred eEEEEEEeCCCccCceEEEEhhhhhhhh-cCCCCCCcCHHHHHHHhcCC-----chhHHHHHHHHHHHHH
Confidence 97 8999999999999999877777654 33333344466677775444 3455556666555543
No 21
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.91 E-value=1.2e-23 Score=227.13 Aligned_cols=201 Identities=27% Similarity=0.362 Sum_probs=160.0
Q ss_pred hhhHHHhhcCCCCCcccchHHH---HHHHHHhccCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEec
Q 002012 257 NDLTELARSGKLDPVIGRDDEI---RRCIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDM 333 (982)
Q Consensus 257 ~~l~~~~~~~~l~~liG~~~~i---~~l~~~L~~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~ 333 (982)
.+|.+++||.+++++|||++-+ .-+-.++......+++|+|||||||||+|+.||+.. ++.|..++
T Consensus 12 ~PLA~rmRP~~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~----------~~~f~~~s- 80 (436)
T COG2256 12 MPLAERLRPKSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTT----------NAAFEALS- 80 (436)
T ss_pred cChHHHhCCCCHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhh----------CCceEEec-
Confidence 4899999999999999999855 223334445788899999999999999999999988 88888886
Q ss_pred ccccccccccccHHHHHHHHHHHHHhc---CCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCCCeEEEEecCchhH
Q 002012 334 ASLVAGTCYRGDFEKRLKAVLKEVTKS---NGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRGELRCIGATTLNEY 410 (982)
Q Consensus 334 ~~l~~~~~~~g~~e~~l~~l~~~~~~~---~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g~i~vI~at~~~~~ 410 (982)
+..+| .+.++.++++++.. +...||||||||++.+. -++.|++.+|+|.|++|||||.++
T Consensus 81 -Av~~g-------vkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~--------QQD~lLp~vE~G~iilIGATTENP- 143 (436)
T COG2256 81 -AVTSG-------VKDLREIIEEARKNRLLGRRTILFLDEIHRFNKA--------QQDALLPHVENGTIILIGATTENP- 143 (436)
T ss_pred -ccccc-------HHHHHHHHHHHHHHHhcCCceEEEEehhhhcChh--------hhhhhhhhhcCCeEEEEeccCCCC-
Confidence 33333 33677888877543 44789999999999743 457899999999999999999999
Q ss_pred hhhhhcChHHHhccceEEecCCCHHHHHHHHHHHHHHHhh---hcCCccChHHHHHHHHHhhhhhccCCCcchhhHHHHH
Q 002012 411 RNYIEKDPALERRFQQVFCDQPSVENTISILRGLRERYEL---HHGVKISDSALVSAAVLADRYITERFLPDKAIDLVDE 487 (982)
Q Consensus 411 ~~~~~~d~al~rRf~~i~i~~Ps~~e~~~IL~~~~~~~~~---~~~v~i~~~~l~~~~~~s~r~i~~~~~p~~a~~lld~ 487 (982)
+|.++++|+||++...+.+.+.+++.++|+.....-+. ...+.++++++..++..+++.. +.+.++++.
T Consensus 144 --sF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~------R~aLN~LE~ 215 (436)
T COG2256 144 --SFELNPALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDA------RRALNLLEL 215 (436)
T ss_pred --CeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchH------HHHHHHHHH
Confidence 57999999999999999999999999999774333222 1235589999999999988543 566677776
Q ss_pred HHHHhh
Q 002012 488 AAAKLK 493 (982)
Q Consensus 488 a~~~~~ 493 (982)
+....+
T Consensus 216 ~~~~~~ 221 (436)
T COG2256 216 AALSAE 221 (436)
T ss_pred HHHhcC
Confidence 665443
No 22
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=5.4e-23 Score=214.12 Aligned_cols=263 Identities=24% Similarity=0.400 Sum_probs=197.9
Q ss_pred HHHHHhhhcccccchHHHHHHHHHHHHHhcCCCCC------CCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEe
Q 002012 655 VMLEEVLHKRVIGQDIAVKSVADAIRRSRAGLSDP------ARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRID 728 (982)
Q Consensus 655 ~~l~~~l~~~iiGq~~a~~~l~~~i~~~~~g~~~~------~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~ 728 (982)
..+...|.+.++||+.|++.++-++......+... .-...|+|+.||+|+|||.+|+.||+.| +-||...|
T Consensus 53 ~eik~~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~L---nVPFaiAD 129 (408)
T COG1219 53 KEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKIL---NVPFAIAD 129 (408)
T ss_pred HHHHHHhhhheecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHh---CCCeeecc
Confidence 45677888999999999998887774433322211 1122479999999999999999999999 88999888
Q ss_pred ccccccccccccccCCCCCccccccCCchhHHHhhCC-------CeEEEEccccccC--------------HHHHHHHHH
Q 002012 729 MSEYMEKHSVSRLVGAPPGYVGYEEGGQLTEVVRRRP-------YSVVLFDEIEKAH--------------QDVFNILLQ 787 (982)
Q Consensus 729 ~s~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~~~-------~~Vl~lDEidkl~--------------~~~~~~Ll~ 787 (982)
+..+. ..||+|.+..+.+..++..+. .+||+||||||.. ..+|.+||+
T Consensus 130 ATtLT-----------EAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLK 198 (408)
T COG1219 130 ATTLT-----------EAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLK 198 (408)
T ss_pred ccchh-----------hccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHH
Confidence 88774 468999988887777776554 5799999999984 359999999
Q ss_pred hhhcCceec--CC-CcE--------EecccEEEEEecC-CChHHHHHh-h-----hhcccchH----HHHHHHHHHH--H
Q 002012 788 LLDDGRITD--SQ-GRT--------VSFTNCVVIMTSN-IGSHYILET-L-----QSVQDSKE----AVYEVMKKQV--V 843 (982)
Q Consensus 788 ~le~g~~~d--~~-g~~--------~~~~~~iiI~tsn-~~~~~i~~~-~-----~~~~~~~~----~~~~~~~~~~--~ 843 (982)
++| |++.. ++ |++ +|.+|..||+..- .|.+.+... + .+...... ....++-+.+ .
T Consensus 199 iiE-GTvasVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~~R~~~~~iGF~a~~~~~~~~~~~~~~l~~vepe 277 (408)
T COG1219 199 IIE-GTVASVPPQGGRKHPQQEFIQVDTSNILFICGGAFAGLEKIIKKRLGKKGIGFGAEVKSKSKKKEEGELLKQVEPE 277 (408)
T ss_pred HHc-CceeccCCCCCCCCCccceEEEcccceeEEeccccccHHHHHHHhccCCcccccccccchhhhhhHHHHHHhcChH
Confidence 998 54432 33 443 6778888888776 355655542 1 11111111 1111222222 3
Q ss_pred HHHHhhcChHHHhccccccccCCCChhHHHHHHHHH----HHHHHHHHHhCCCCccCCHHHHHHHHhcCCCCCCCchHHH
Q 002012 844 ELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQ----MNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVK 919 (982)
Q Consensus 844 ~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~----l~~~~~~~~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~ 919 (982)
+.++-++-|+|++|+..+....+|+++++.+|+..- +++++..+...++.+.|+++|+..+++.......|||+|+
T Consensus 278 DLvkFGLIPEfIGRlPvia~L~~Lde~aLv~ILtePkNAlvKQYq~Lf~~d~V~L~F~~~AL~~IA~~A~~rkTGARGLR 357 (408)
T COG1219 278 DLVKFGLIPEFIGRLPVIATLEELDEDALVQILTEPKNALVKQYQKLFEMDGVELEFTEEALKAIAKKAIERKTGARGLR 357 (408)
T ss_pred HHHHcCCcHHHhcccceeeehhhcCHHHHHHHHhcccHHHHHHHHHHhcccCceEEEcHHHHHHHHHHHHHhccchhHHH
Confidence 677788999999999999999999999999999544 5666666677789999999999999999888999999999
Q ss_pred HHHHHHHHHHHHH
Q 002012 920 RVIQQLVENEIAV 932 (982)
Q Consensus 920 ~~i~~~l~~~la~ 932 (982)
.+++.++.+.+.+
T Consensus 358 sI~E~~lld~Mfe 370 (408)
T COG1219 358 SIIEELLLDVMFE 370 (408)
T ss_pred HHHHHHHHHHHhh
Confidence 9999988887754
No 23
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=4.8e-21 Score=227.62 Aligned_cols=427 Identities=24% Similarity=0.295 Sum_probs=263.2
Q ss_pred HhccCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccccccccccHHHHHHHHHHHHHhcCCC
Q 002012 284 ILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGTCYRGDFEKRLKAVLKEVTKSNGQ 363 (982)
Q Consensus 284 ~L~~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~ 363 (982)
.+...+..+++++||||+|||.++++++.. . .....++..... .++.|+.+..+..++..+... .+
T Consensus 12 ~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~---~--------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~a~~~-~~ 77 (494)
T COG0464 12 KLGIEPPKGVLLHGPPGTGKTLLARALANE---G--------AEFLSINGPEIL--SKYVGESELRLRELFEEAEKL-AP 77 (494)
T ss_pred HhCCCCCCCceeeCCCCCchhHHHHHHHhc---c--------CcccccCcchhh--hhhhhHHHHHHHHHHHHHHHh-CC
Confidence 334467789999999999999999999986 1 111344434444 457889999999999998874 45
Q ss_pred eEEEEccchhhhhCCCCCc---hhhHHHHHHhhhc---CCCeEEEEecCchhHhhhhhcChHHHh--ccc-eEEecCCCH
Q 002012 364 IILFIDELHTIIGAGNQSG---AMDASNMLKPMLG---RGELRCIGATTLNEYRNYIEKDPALER--RFQ-QVFCDQPSV 434 (982)
Q Consensus 364 ~IL~IDEi~~l~~~~~~~~---~~~~~~~L~~~le---~g~i~vI~at~~~~~~~~~~~d~al~r--Rf~-~i~i~~Ps~ 434 (982)
.++++||++.+.+...... ...+...+...++ ++.+.+++.++... .+++++++ ||. .+.+..|+.
T Consensus 78 ~ii~~d~~~~~~~~~~~~~~~~~~~v~~~l~~~~d~~~~~~v~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~ 152 (494)
T COG0464 78 SIIFIDEIDALAPKRSSDQGEVERRVVAQLLALMDGLKRGQVIVIGATNRPD-----GLDPAKRRPGRFDREIEVNLPDE 152 (494)
T ss_pred CeEeechhhhcccCccccccchhhHHHHHHHHhcccccCCceEEEeecCCcc-----ccChhHhCccccceeeecCCCCH
Confidence 7999999999987765411 1233444444443 44577778777777 68998888 786 888888988
Q ss_pred HHHHHHHHHHHHHHhhhcCCccC-hHHHHHHHHHhhhhhccCCCcchhhHHHHHHHHHhhhhccCCccchHHHHHHHHHH
Q 002012 435 ENTISILRGLRERYELHHGVKIS-DSALVSAAVLADRYITERFLPDKAIDLVDEAAAKLKMEITSKPIELDEIDRAVLKL 513 (982)
Q Consensus 435 ~e~~~IL~~~~~~~~~~~~v~i~-~~~l~~~~~~s~r~i~~~~~p~~a~~lld~a~~~~~~~~~~~~~~l~~~~~~~~~~ 513 (982)
....+|+......+ .+. +.....++..+.+|. ..+...++.++.........
T Consensus 153 ~~~~ei~~~~~~~~------~~~~~~~~~~~a~~~~~~~-----~~~~~~l~~~~~~~~~~r~~---------------- 205 (494)
T COG0464 153 AGRLEILQIHTRLM------FLGPPGTGKTLAARTVGKS-----GADLGALAKEAALRELRRAI---------------- 205 (494)
T ss_pred HHHHHHHHHHHhcC------CCcccccHHHHHHhcCCcc-----HHHHHHHHHHHHHHHHHhhh----------------
Confidence 87777776544331 222 333444444433222 22222332222211110000
Q ss_pred HHHHhhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHhh
Q 002012 514 EMEKLSLKNDTDKASKERLSKLEHDLNSLKQKQKELNDQWSREKDLMSRIRSIKEEIDRVNLEMEAAERDYDLNRAAELK 593 (982)
Q Consensus 514 ~~e~~~l~~~~~~~~~~~l~~~~~e~~~l~~~~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 593 (982)
...
T Consensus 206 -----~~~------------------------------------------------------------------------ 208 (494)
T COG0464 206 -----DLV------------------------------------------------------------------------ 208 (494)
T ss_pred -----ccC------------------------------------------------------------------------
Confidence 000
Q ss_pred hcchHHHHHHHHHHHHhHHHHHhcCCccccccCCHhHHHHHHHHhhCCCCcccchhHHHHHHHHHHhhhcccccchHHHH
Q 002012 594 YGTMISLQRQLEEAEKNLSEFQKSGHSLLREEVTDLDIAEIVSKWTGIPLSSLQQSEREKLVMLEEVLHKRVIGQDIAVK 673 (982)
Q Consensus 594 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~gi~~~~~~~~~~~~l~~l~~~l~~~iiGq~~a~~ 673 (982)
.....++..+....+....+. .. .+......-+.++.|.+.++.
T Consensus 209 ---------------------------~~~~~~~~~~~~~~l~~~~~~-~~--------~~~~~~~v~~~diggl~~~k~ 252 (494)
T COG0464 209 ---------------------------GEYIGVTEDDFEEALKKVLPS-RG--------VLFEDEDVTLDDIGGLEEAKE 252 (494)
T ss_pred ---------------------------cccccccHHHHHHHHHhcCcc-cc--------cccCCCCcceehhhcHHHHHH
Confidence 000011111111222111110 00 000000112345555666666
Q ss_pred HHHHHHHHHhcCCC----CCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccccccccCCCCCcc
Q 002012 674 SVADAIRRSRAGLS----DPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRLVGAPPGYV 749 (982)
Q Consensus 674 ~l~~~i~~~~~g~~----~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l~g~~~g~v 749 (982)
.+.+++........ ...++...+||+||||||||++|+++|..+ +.+|+.++++++... |+
T Consensus 253 ~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~---~~~fi~v~~~~l~sk------------~v 317 (494)
T COG0464 253 ELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALES---RSRFISVKGSELLSK------------WV 317 (494)
T ss_pred HHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhC---CCeEEEeeCHHHhcc------------cc
Confidence 66665533221111 011233359999999999999999999987 889999999987543 45
Q ss_pred ccccC--CchhHHHhhCCCeEEEEccccccCH-----------HHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCC
Q 002012 750 GYEEG--GQLTEVVRRRPYSVVLFDEIEKAHQ-----------DVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIG 816 (982)
Q Consensus 750 g~~~~--~~l~~~l~~~~~~Vl~lDEidkl~~-----------~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~ 816 (982)
|..+. +.++...++...+||||||+|++.+ .+++.|+..|+.-. ...++++|.+||..
T Consensus 318 Gesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e---------~~~~v~vi~aTN~p 388 (494)
T COG0464 318 GESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIE---------KAEGVLVIAATNRP 388 (494)
T ss_pred chHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCC---------ccCceEEEecCCCc
Confidence 54443 3467777777889999999998832 47888888886321 12458889999976
Q ss_pred hHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHh--ccccccccCCCChhHHHHHHHHHHHHHHHHHHhCCCCc
Q 002012 817 SHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLN--RIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDL 894 (982)
Q Consensus 817 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~--Rid~ii~F~pl~~~~l~~il~~~l~~~~~~~~~~~~~l 894 (982)
.. ++|+++. |||.++.|++++.++..+|+...+.... . .
T Consensus 389 ~~-------------------------------ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~-------~-~ 429 (494)
T COG0464 389 DD-------------------------------LDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKK-------P-P 429 (494)
T ss_pred cc-------------------------------cCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccC-------C-c
Confidence 53 6778887 9999999999999999999999987511 1 1
Q ss_pred cCCHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHH
Q 002012 895 HYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAI 934 (982)
Q Consensus 895 ~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~l~~~la~~~ 934 (982)
-.++-..+.|++. ...|...++..+++.....++.+..
T Consensus 430 ~~~~~~~~~l~~~--t~~~sgadi~~i~~ea~~~~~~~~~ 467 (494)
T COG0464 430 LAEDVDLEELAEI--TEGYSGADIAALVREAALEALREAR 467 (494)
T ss_pred chhhhhHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHhc
Confidence 1223334555542 2336668899999998888877654
No 24
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=2e-22 Score=214.19 Aligned_cols=201 Identities=25% Similarity=0.360 Sum_probs=167.5
Q ss_pred cCCCCCcccchHHHHHHHHHhc-------------cCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEE
Q 002012 265 SGKLDPVIGRDDEIRRCIQILS-------------RRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISL 331 (982)
Q Consensus 265 ~~~l~~liG~~~~i~~l~~~L~-------------~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l 331 (982)
.-+.+++=|-++.++.+.+++. -.++.++|||||||||||.+|+++|+.. ++.|+.+
T Consensus 147 dvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T----------~AtFIrv 216 (406)
T COG1222 147 DVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT----------DATFIRV 216 (406)
T ss_pred CCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc----------CceEEEe
Confidence 3467788888888877777542 2578899999999999999999999987 9999999
Q ss_pred ecccccccccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCC---CCchhhHHHHHHhhhc-------CCCeEE
Q 002012 332 DMASLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGN---QSGAMDASNMLKPMLG-------RGELRC 401 (982)
Q Consensus 332 ~~~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~---~~~~~~~~~~L~~~le-------~g~i~v 401 (982)
..+.|+ .+|.|+.....+++|..++. +.|+|+||||||.+...+. ++|..+++..|+++|. +++|.|
T Consensus 217 vgSElV--qKYiGEGaRlVRelF~lAre-kaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKV 293 (406)
T COG1222 217 VGSELV--QKYIGEGARLVRELFELARE-KAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKV 293 (406)
T ss_pred ccHHHH--HHHhccchHHHHHHHHHHhh-cCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEE
Confidence 999999 56999999999999999887 7899999999999987643 4677889999988884 689999
Q ss_pred EEecCchhHhhhhhcChHHHh--ccc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCCc
Q 002012 402 IGATTLNEYRNYIEKDPALER--RFQ-QVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLP 478 (982)
Q Consensus 402 I~at~~~~~~~~~~~d~al~r--Rf~-~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~p 478 (982)
|+|||..+ .+||||+| ||+ .|+|+.|+.+.+.+||+....++....++. ++.++.. ++.+..
T Consensus 294 I~ATNR~D-----~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd-----~e~la~~-----~~g~sG 358 (406)
T COG1222 294 IMATNRPD-----ILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVD-----LELLARL-----TEGFSG 358 (406)
T ss_pred EEecCCcc-----ccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcC-----HHHHHHh-----cCCCch
Confidence 99999999 79999999 997 999999999999999998888754433332 4556666 445566
Q ss_pred chhhHHHHHHHHHhh
Q 002012 479 DKAIDLVDEAAAKLK 493 (982)
Q Consensus 479 ~~a~~lld~a~~~~~ 493 (982)
++...++.+|+..+-
T Consensus 359 AdlkaictEAGm~Ai 373 (406)
T COG1222 359 ADLKAICTEAGMFAI 373 (406)
T ss_pred HHHHHHHHHHhHHHH
Confidence 888888888886654
No 25
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.89 E-value=2.4e-22 Score=222.88 Aligned_cols=261 Identities=24% Similarity=0.385 Sum_probs=188.4
Q ss_pred HHHHHhhhcccccchHHHHHHHHHHHH--HhcCCCCCC---CCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEec
Q 002012 655 VMLEEVLHKRVIGQDIAVKSVADAIRR--SRAGLSDPA---RPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDM 729 (982)
Q Consensus 655 ~~l~~~l~~~iiGq~~a~~~l~~~i~~--~~~g~~~~~---~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~ 729 (982)
..+.+.|...|+||++|++.+..++.. .+.++..+. .+..++||+||||||||++|+.||+.+ +.+|+.+|+
T Consensus 7 ~~I~~~Ld~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l---~~~fi~vD~ 83 (443)
T PRK05201 7 REIVSELDKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLA---NAPFIKVEA 83 (443)
T ss_pred HHHHHHhccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHh---CChheeecc
Confidence 456788889999999999999999964 233322211 123579999999999999999999998 889999999
Q ss_pred cccccccccc----------------------------------------cccCCC------------------------
Q 002012 730 SEYMEKHSVS----------------------------------------RLVGAP------------------------ 745 (982)
Q Consensus 730 s~~~~~~~~~----------------------------------------~l~g~~------------------------ 745 (982)
++|.+...+. .+.+..
T Consensus 84 t~f~e~GyvG~d~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l 163 (443)
T PRK05201 84 TKFTEVGYVGRDVESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKL 163 (443)
T ss_pred hhhccCCcccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHH
Confidence 8876521000 011100
Q ss_pred ---------------C--C----cc--ccccC------------------------------------------CchhHH
Q 002012 746 ---------------P--G----YV--GYEEG------------------------------------------GQLTEV 760 (982)
Q Consensus 746 ---------------~--g----~v--g~~~~------------------------------------------~~l~~~ 760 (982)
. + +. |.... ....++
T Consensus 164 ~~g~ldd~~iei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~a 243 (443)
T PRK05201 164 REGELDDKEIEIEVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEA 243 (443)
T ss_pred HcCCcCCcEEEEEecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHH
Confidence 0 0 00 00000 000122
Q ss_pred HhhC-CCeEEEEccccccC------------HHHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCChHHHHHhhhhc
Q 002012 761 VRRR-PYSVVLFDEIEKAH------------QDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSV 827 (982)
Q Consensus 761 l~~~-~~~Vl~lDEidkl~------------~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~i~~~~~~~ 827 (982)
+..+ ..+|||||||||+. ..+|..||+++|.-.+. .....++..|+.||++.-....
T Consensus 244 i~~ae~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~-~k~~~i~T~~ILFI~~GAF~~~--------- 313 (443)
T PRK05201 244 IERVEQNGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVS-TKYGMVKTDHILFIASGAFHVS--------- 313 (443)
T ss_pred HHHHHcCCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceee-ecceeEECCceeEEecCCcCCC---------
Confidence 3433 67899999999984 34999999999954443 3345788999999998765321
Q ss_pred ccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHH----HHHHHHHHHHHHhCCCCccCCHHHHHH
Q 002012 828 QDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIV----EIQMNRVKDRLKQKKIDLHYTKEAVTL 903 (982)
Q Consensus 828 ~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il----~~~l~~~~~~~~~~~~~l~i~~~a~~~ 903 (982)
.. ..+-|+|.+||..++.+.||+.+++.+|+ ...++++...+...|+.+.|+++|++.
T Consensus 314 -kp-----------------~DlIPEl~GR~Pi~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~ 375 (443)
T PRK05201 314 -KP-----------------SDLIPELQGRFPIRVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRR 375 (443)
T ss_pred -Ch-----------------hhccHHHhCccceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHH
Confidence 00 11679999999999999999999999999 567888888899999999999999999
Q ss_pred HHhcCCC-----CCCCchHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEEee
Q 002012 904 LGILGFD-----PNFGARPVKRVIQQLVENEIAVAILKGDIKEEDSVIIDVD 950 (982)
Q Consensus 904 L~~~~~~-----~~~gaR~L~~~i~~~l~~~la~~~l~~~~~~~~~i~v~~~ 950 (982)
|++..+. .+.|||+|+.++++++...+.+. .-..+.++.|+-+
T Consensus 376 IA~~A~~~N~~~~~iGAR~LrtI~E~~L~d~~Fe~----p~~~~~~v~I~~~ 423 (443)
T PRK05201 376 IAEIAYQVNEKTENIGARRLHTVMEKLLEDISFEA----PDMSGETVTIDAA 423 (443)
T ss_pred HHHHHHHhcccccccchhhHHHHHHHHHHHHhccC----CCCCCCEEEECHH
Confidence 9998765 58999999999999777766432 2124566766544
No 26
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.89 E-value=6.5e-22 Score=223.41 Aligned_cols=229 Identities=18% Similarity=0.282 Sum_probs=192.4
Q ss_pred hhcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEecccccccccccc
Q 002012 661 LHKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSR 740 (982)
Q Consensus 661 l~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~ 740 (982)
....++|++.++.++.+.+.+.. ....++|+.|++||||..+|++|++..-..+.||+.+||+.+...--.+.
T Consensus 139 ~~~~liG~S~am~~l~~~i~kvA-------~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ESE 211 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKVA-------PSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLESE 211 (464)
T ss_pred ccCCceecCHHHHHHHHHHHHHh-------CCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHHHHH
Confidence 56789999999999999998762 22235999999999999999999999887789999999999987666677
Q ss_pred ccCCCCC-ccccccCCchhHHHhhCCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCChHH
Q 002012 741 LVGAPPG-YVGYEEGGQLTEVVRRRPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHY 819 (982)
Q Consensus 741 l~g~~~g-~vg~~~~~~l~~~l~~~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~ 819 (982)
|||...| +.|.... -.+.+..+.+++||||||..|+.++|..||.+|+++++..-.|....-.+++||++||.+...
T Consensus 212 LFGhekGAFTGA~~~--r~G~fE~A~GGTLfLDEI~~mpl~~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT~~dL~~ 289 (464)
T COG2204 212 LFGHEKGAFTGAITR--RIGRFEQANGGTLFLDEIGEMPLELQVKLLRVLQEREFERVGGNKPIKVDVRIIAATNRDLEE 289 (464)
T ss_pred hhcccccCcCCcccc--cCcceeEcCCceEEeeccccCCHHHHHHHHHHHHcCeeEecCCCcccceeeEEEeecCcCHHH
Confidence 9998876 4554322 245778889999999999999999999999999999998877766666789999999988765
Q ss_pred HHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhcccc-ccccCCCCh--hHHHHHHHHHHHHHHHHHHhCCCCccC
Q 002012 820 ILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDE-YIVFQPLDS--KEISKIVEIQMNRVKDRLKQKKIDLHY 896 (982)
Q Consensus 820 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~-ii~F~pl~~--~~l~~il~~~l~~~~~~~~~~~~~l~i 896 (982)
..+. +.|+.+|++|+.. .|..|||.+ +|+.-+++.++++++.++... ...+
T Consensus 290 ~v~~------------------------G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~--~~~~ 343 (464)
T COG2204 290 EVAA------------------------GRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRP--PKGF 343 (464)
T ss_pred HHHc------------------------CCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCCC--CCCC
Confidence 4442 5699999999976 477888875 899999999999988776533 3789
Q ss_pred CHHHHHHHHhcCCCCCCCchHHHHHHHHHH
Q 002012 897 TKEAVTLLGILGFDPNFGARPVKRVIQQLV 926 (982)
Q Consensus 897 ~~~a~~~L~~~~~~~~~gaR~L~~~i~~~l 926 (982)
++++++.|..|.|++|. |+|++++++.+
T Consensus 344 s~~a~~~L~~y~WPGNV--REL~N~ver~~ 371 (464)
T COG2204 344 SPEALAALLAYDWPGNV--RELENVVERAV 371 (464)
T ss_pred CHHHHHHHHhCCCChHH--HHHHHHHHHHH
Confidence 99999999999999876 99999999843
No 27
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=8e-21 Score=215.89 Aligned_cols=261 Identities=23% Similarity=0.340 Sum_probs=205.6
Q ss_pred hHHHHHHHHhhCCCCcccchhHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHH
Q 002012 629 LDIAEIVSKWTGIPLSSLQQSEREKLVMLEEVLHKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTE 708 (982)
Q Consensus 629 ~~i~~~~~~~~gi~~~~~~~~~~~~l~~l~~~l~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~ 708 (982)
...+++++|.+.+||.+.+.. ...+...+..|.++-.|.+++++.|.+.|.-.+.... ...++ ++|+||||+|||+
T Consensus 378 nvtrNYLdwlt~LPWgk~S~E-n~dl~~Ak~iLdeDHYgm~dVKeRILEfiAV~kLrgs-~qGkI--lCf~GPPGVGKTS 453 (906)
T KOG2004|consen 378 NVTRNYLDWLTSLPWGKSSTE-NLDLARAKEILDEDHYGMEDVKERILEFIAVGKLRGS-VQGKI--LCFVGPPGVGKTS 453 (906)
T ss_pred hHHHHHHHHHHhCCCCCCChh-hhhHHHHHHhhcccccchHHHHHHHHHHHHHHhhccc-CCCcE--EEEeCCCCCCccc
Confidence 347889999999999987766 5678888999999999999999999998875543211 22333 8999999999999
Q ss_pred HHHHHHHHhcCCCCceEEEeccccccccccccccCCCCCccccccCCchhHHHhhCC--CeEEEEccccccCH----HHH
Q 002012 709 LGKALADFLFNTENALVRIDMSEYMEKHSVSRLVGAPPGYVGYEEGGQLTEVVRRRP--YSVVLFDEIEKAHQ----DVF 782 (982)
Q Consensus 709 lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~~~--~~Vl~lDEidkl~~----~~~ 782 (982)
+|+.||+.| +..|.++..+.+. +++.+-|+...|+|.-.|+ +.+.+++.. +.+++||||||+.. +-.
T Consensus 454 I~kSIA~AL---nRkFfRfSvGG~t---DvAeIkGHRRTYVGAMPGk-iIq~LK~v~t~NPliLiDEvDKlG~g~qGDPa 526 (906)
T KOG2004|consen 454 IAKSIARAL---NRKFFRFSVGGMT---DVAEIKGHRRTYVGAMPGK-IIQCLKKVKTENPLILIDEVDKLGSGHQGDPA 526 (906)
T ss_pred HHHHHHHHh---CCceEEEeccccc---cHHhhcccceeeeccCChH-HHHHHHhhCCCCceEEeehhhhhCCCCCCChH
Confidence 999999999 8899999988874 4567778888899887766 667777543 56999999999965 356
Q ss_pred HHHHHhhhcC---ceecCC-CcEEecccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhcc
Q 002012 783 NILLQLLDDG---RITDSQ-GRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRI 858 (982)
Q Consensus 783 ~~Ll~~le~g---~~~d~~-g~~~~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Ri 858 (982)
.+||.+||.. .|.|-. .-.+|++++.||+|.|.-. .++|+|++|+
T Consensus 527 sALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~id-------------------------------tIP~pLlDRM 575 (906)
T KOG2004|consen 527 SALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVID-------------------------------TIPPPLLDRM 575 (906)
T ss_pred HHHHHhcChhhccchhhhccccccchhheEEEEeccccc-------------------------------cCChhhhhhh
Confidence 8999999853 344443 4568899999999999643 2899999999
Q ss_pred ccccccCCCChhHHHHHHHHHHHHHHHHHHhCC---CCccCCHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 002012 859 DEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKK---IDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAIL 935 (982)
Q Consensus 859 d~ii~F~pl~~~~l~~il~~~l~~~~~~~~~~~---~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~l~~~la~~~l 935 (982)
++|..+-|..++-.+|.+.+|-.-. ....| -.+.++++++..|.++ |-..-|+|.|++-|++++... |=.+.
T Consensus 576 -EvIelsGYv~eEKv~IA~~yLip~a--~~~~gl~~e~v~is~~al~~lI~~-YcrEaGVRnLqk~iekI~Rk~-Al~vv 650 (906)
T KOG2004|consen 576 -EVIELSGYVAEEKVKIAERYLIPQA--LKDCGLKPEQVKISDDALLALIER-YCREAGVRNLQKQIEKICRKV-ALKVV 650 (906)
T ss_pred -heeeccCccHHHHHHHHHHhhhhHH--HHHcCCCHHhcCccHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHH-HHHHH
Confidence 7999999999999999999975422 22333 3478999999888776 666679999999999855443 33344
Q ss_pred c
Q 002012 936 K 936 (982)
Q Consensus 936 ~ 936 (982)
+
T Consensus 651 ~ 651 (906)
T KOG2004|consen 651 E 651 (906)
T ss_pred H
Confidence 3
No 28
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.87 E-value=3.4e-21 Score=195.15 Aligned_cols=187 Identities=27% Similarity=0.405 Sum_probs=150.5
Q ss_pred HHHhhcCCCCCcccchHHHHHHHHHh---cc------CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEE
Q 002012 260 TELARSGKLDPVIGRDDEIRRCIQIL---SR------RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLIS 330 (982)
Q Consensus 260 ~~~~~~~~l~~liG~~~~i~~l~~~L---~~------~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~ 330 (982)
.+..+.-+|+++|||++..+.+.-++ .. =.+.|+||+||||||||++|++||.+. +.+++.
T Consensus 112 ~e~~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~----------kvp~l~ 181 (368)
T COG1223 112 REIISDITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA----------KVPLLL 181 (368)
T ss_pred hhhhccccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc----------CCceEE
Confidence 34455668999999999776654443 22 246799999999999999999999988 889999
Q ss_pred EecccccccccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCC----CchhhHHHHHHhhhc----CCCeEEE
Q 002012 331 LDMASLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQ----SGAMDASNMLKPMLG----RGELRCI 402 (982)
Q Consensus 331 l~~~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~----~~~~~~~~~L~~~le----~g~i~vI 402 (982)
+....+++. +.|+...+++++++.+.. ..|||+||||+|.+.-.+.- +...++.|.|+.-|+ +-.+..|
T Consensus 182 vkat~liGe--hVGdgar~Ihely~rA~~-~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtI 258 (368)
T COG1223 182 VKATELIGE--HVGDGARRIHELYERARK-AAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTI 258 (368)
T ss_pred echHHHHHH--HhhhHHHHHHHHHHHHHh-cCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEE
Confidence 999999854 899999999999999987 57899999999998765431 223567788888775 5689999
Q ss_pred EecCchhHhhhhhcChHHHhccc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhh
Q 002012 403 GATTLNEYRNYIEKDPALERRFQ-QVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLAD 469 (982)
Q Consensus 403 ~at~~~~~~~~~~~d~al~rRf~-~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~ 469 (982)
++||+++ .+||++++||. .|+|..|+.+++..|++...+.+. +.++-. +.+++..+.
T Consensus 259 aaTN~p~-----~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~P----lpv~~~-~~~~~~~t~ 316 (368)
T COG1223 259 AATNRPE-----LLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFP----LPVDAD-LRYLAAKTK 316 (368)
T ss_pred eecCChh-----hcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCC----CccccC-HHHHHHHhC
Confidence 9999999 69999999997 999999999999999998888753 333333 455555543
No 29
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.87 E-value=6.9e-22 Score=201.40 Aligned_cols=190 Identities=25% Similarity=0.301 Sum_probs=131.7
Q ss_pred hhhhHHHhhcCCCCCcccchHHHHHHHH---Hhcc--CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEE
Q 002012 256 GNDLTELARSGKLDPVIGRDDEIRRCIQ---ILSR--RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLIS 330 (982)
Q Consensus 256 ~~~l~~~~~~~~l~~liG~~~~i~~l~~---~L~~--~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~ 330 (982)
..++.+..||.+|+++|||++.+..+.- +... ....|+||+||||+||||+|+.+|+++ +..+..
T Consensus 11 ~~~l~~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~----------~~~~~~ 80 (233)
T PF05496_consen 11 EAPLAERLRPKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANEL----------GVNFKI 80 (233)
T ss_dssp -S-HHHHTS-SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHC----------T--EEE
T ss_pred chhhHHhcCCCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhcc----------CCCeEe
Confidence 3568889999999999999997766443 3222 245689999999999999999999999 888877
Q ss_pred EecccccccccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCCC------------
Q 002012 331 LDMASLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRGE------------ 398 (982)
Q Consensus 331 l~~~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g~------------ 398 (982)
++...+. ..+ .+..++..+ ..+.||||||||++. ..++++|.++||++.
T Consensus 81 ~sg~~i~----k~~----dl~~il~~l---~~~~ILFIDEIHRln--------k~~qe~LlpamEd~~idiiiG~g~~ar 141 (233)
T PF05496_consen 81 TSGPAIE----KAG----DLAAILTNL---KEGDILFIDEIHRLN--------KAQQEILLPAMEDGKIDIIIGKGPNAR 141 (233)
T ss_dssp EECCC------SCH----HHHHHHHT-----TT-EEEECTCCC----------HHHHHHHHHHHHCSEEEEEBSSSSS-B
T ss_pred ccchhhh----hHH----HHHHHHHhc---CCCcEEEEechhhcc--------HHHHHHHHHHhccCeEEEEeccccccc
Confidence 7643322 112 233444444 345599999999997 677889999998764
Q ss_pred --------eEEEEecCchhHhhhhhcChHHHhccceE-EecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhh
Q 002012 399 --------LRCIGATTLNEYRNYIEKDPALERRFQQV-FCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLAD 469 (982)
Q Consensus 399 --------i~vI~at~~~~~~~~~~~d~al~rRf~~i-~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~ 469 (982)
+.+|||||... .+++.|++||..+ .+..++.+++.+|+..-... .++.+++++..+++..|.
T Consensus 142 ~~~~~l~~FTligATTr~g-----~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~----l~i~i~~~~~~~Ia~rsr 212 (233)
T PF05496_consen 142 SIRINLPPFTLIGATTRAG-----LLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARI----LNIEIDEDAAEEIARRSR 212 (233)
T ss_dssp EEEEE----EEEEEESSGC-----CTSHCCCTTSSEEEE----THHHHHHHHHHCCHC----TT-EE-HHHHHHHHHCTT
T ss_pred eeeccCCCceEeeeecccc-----ccchhHHhhcceecchhcCCHHHHHHHHHHHHHH----hCCCcCHHHHHHHHHhcC
Confidence 47899999987 6899999999854 79999999999998765554 689999999999998875
Q ss_pred hhhccCCCcchhhHHHHHHH
Q 002012 470 RYITERFLPDKAIDLVDEAA 489 (982)
Q Consensus 470 r~i~~~~~p~~a~~lld~a~ 489 (982)
..|+-|..|+..+.
T Consensus 213 ------GtPRiAnrll~rvr 226 (233)
T PF05496_consen 213 ------GTPRIANRLLRRVR 226 (233)
T ss_dssp ------TSHHHHHHHHHHHC
T ss_pred ------CChHHHHHHHHHHH
Confidence 56888888877553
No 30
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.87 E-value=1.6e-21 Score=218.76 Aligned_cols=230 Identities=21% Similarity=0.342 Sum_probs=192.7
Q ss_pred hhcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEecccccccccccc
Q 002012 661 LHKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSR 740 (982)
Q Consensus 661 l~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~ 740 (982)
-+++|+|.+.++..+.+.+++. .+...++|+.|++||||..+|++|++..-..+.||+.+||+.+.+.--.+.
T Consensus 243 ~f~~Iig~S~~m~~~~~~akr~-------A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe~LlESE 315 (560)
T COG3829 243 TFDDIIGESPAMLRVLELAKRI-------AKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPETLLESE 315 (560)
T ss_pred chhhhccCCHHHHHHHHHHHhh-------cCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCHHHHHHH
Confidence 3578999999988888877765 222335999999999999999999999988889999999999987766788
Q ss_pred ccCCCCC-ccccccCCchhHHHhhCCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCChHH
Q 002012 741 LVGAPPG-YVGYEEGGQLTEVVRRRPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHY 819 (982)
Q Consensus 741 l~g~~~g-~vg~~~~~~l~~~l~~~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~ 819 (982)
|||...| |.|...+| =.+.+..+.++.||||||..|+...|..||++|+++++..-.|......+++||++||.....
T Consensus 316 LFGye~GAFTGA~~~G-K~GlfE~A~gGTLFLDEIgempl~LQaKLLRVLQEkei~rvG~t~~~~vDVRIIAATN~nL~~ 394 (560)
T COG3829 316 LFGYEKGAFTGASKGG-KPGLFELANGGTLFLDEIGEMPLPLQAKLLRVLQEKEIERVGGTKPIPVDVRIIAATNRNLEK 394 (560)
T ss_pred HhCcCCccccccccCC-CCcceeeccCCeEEehhhccCCHHHHHHHHHHHhhceEEecCCCCceeeEEEEEeccCcCHHH
Confidence 9999877 67766543 245677788999999999999999999999999999998776666667789999999998776
Q ss_pred HHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhcccc-ccccCCCCh--hHHHHHHHHHHHHHHHHHHhCCCCccC
Q 002012 820 ILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDE-YIVFQPLDS--KEISKIVEIQMNRVKDRLKQKKIDLHY 896 (982)
Q Consensus 820 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~-ii~F~pl~~--~~l~~il~~~l~~~~~~~~~~~~~l~i 896 (982)
.++. +.|+.+|++|++. -|..|||.+ +|+..++..++.++..++...- ..+
T Consensus 395 ~i~~------------------------G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v--~~l 448 (560)
T COG3829 395 MIAE------------------------GTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNV--KGL 448 (560)
T ss_pred HHhc------------------------CcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCc--ccC
Confidence 5542 5699999999976 477888875 8999999999999887765432 459
Q ss_pred CHHHHHHHHhcCCCCCCCchHHHHHHHHHH
Q 002012 897 TKEAVTLLGILGFDPNFGARPVKRVIQQLV 926 (982)
Q Consensus 897 ~~~a~~~L~~~~~~~~~gaR~L~~~i~~~l 926 (982)
++++++.|..|.|++|. |+|+++|++.+
T Consensus 449 s~~a~~~L~~y~WPGNV--RELeNviER~v 476 (560)
T COG3829 449 SPDALALLLRYDWPGNV--RELENVIERAV 476 (560)
T ss_pred CHHHHHHHHhCCCCchH--HHHHHHHHHHH
Confidence 99999999999999866 99999999843
No 31
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.86 E-value=3.1e-21 Score=213.90 Aligned_cols=260 Identities=26% Similarity=0.424 Sum_probs=186.3
Q ss_pred HHHHHhhhcccccchHHHHHHHHHHHHH--hcCCC----CCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEe
Q 002012 655 VMLEEVLHKRVIGQDIAVKSVADAIRRS--RAGLS----DPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRID 728 (982)
Q Consensus 655 ~~l~~~l~~~iiGq~~a~~~l~~~i~~~--~~g~~----~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~ 728 (982)
..+.+.|.+.|+||++|++.+..++... +.++. .+..| .++||+||||||||++|++||+.+ +.+|+.+|
T Consensus 4 ~~I~~~Ld~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p-~~ILLiGppG~GKT~lAraLA~~l---~~~fi~vd 79 (441)
T TIGR00390 4 REIVAELDKYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTP-KNILMIGPTGVGKTEIARRLAKLA---NAPFIKVE 79 (441)
T ss_pred HHHHHHHhhhccCHHHHHHHHHHHHHhhhhhhccccccccccCC-ceEEEECCCCCCHHHHHHHHHHHh---CCeEEEee
Confidence 3567788899999999999999998753 22221 12223 579999999999999999999998 88999999
Q ss_pred ccccccc-cc---c----ccc--------------------------------cCCCCCc--------------------
Q 002012 729 MSEYMEK-HS---V----SRL--------------------------------VGAPPGY-------------------- 748 (982)
Q Consensus 729 ~s~~~~~-~~---~----~~l--------------------------------~g~~~g~-------------------- 748 (982)
+..+.+. +. . ..+ +.....+
T Consensus 80 at~~~e~g~vG~dvE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~ 159 (441)
T TIGR00390 80 ATKFTEVGYVGRDVESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKK 159 (441)
T ss_pred cceeecCCcccCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHH
Confidence 8876531 10 0 011 1000000
Q ss_pred --------------c--------------ccccC------------------------------------------Cchh
Q 002012 749 --------------V--------------GYEEG------------------------------------------GQLT 758 (982)
Q Consensus 749 --------------v--------------g~~~~------------------------------------------~~l~ 758 (982)
+ |.... ....
T Consensus 160 l~~g~ldd~~iei~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~ 239 (441)
T TIGR00390 160 LREGELDDKEIEIDVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQ 239 (441)
T ss_pred HhcCCccCcEEEEeecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHH
Confidence 0 00000 0001
Q ss_pred HHHhh-CCCeEEEEccccccCH------------HHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCChHHHHHhhh
Q 002012 759 EVVRR-RPYSVVLFDEIEKAHQ------------DVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQ 825 (982)
Q Consensus 759 ~~l~~-~~~~Vl~lDEidkl~~------------~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~i~~~~~ 825 (982)
+++.. ...+|||||||||+.. .+|..||+++|...+. .....++..|+.||++.-.....
T Consensus 240 ~a~~~~e~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~-~k~~~v~T~~ILFI~~GAF~~~k------ 312 (441)
T TIGR00390 240 EAIDAVEQSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVN-TKYGMVKTDHILFIAAGAFQLAK------ 312 (441)
T ss_pred HHHHHHHcCCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceee-ecceeEECCceeEEecCCcCCCC------
Confidence 12222 4678999999999853 3999999999954444 34457899999999987654210
Q ss_pred hcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHH----HHHHHHHHHHHHhCCCCccCCHHHH
Q 002012 826 SVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIV----EIQMNRVKDRLKQKKIDLHYTKEAV 901 (982)
Q Consensus 826 ~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il----~~~l~~~~~~~~~~~~~l~i~~~a~ 901 (982)
. ..+-|+|.+||..++.+.||+.+++.+|+ ...++++...+...++.+.|+++|+
T Consensus 313 ----p-----------------~DlIPEl~GR~Pi~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al 371 (441)
T TIGR00390 313 ----P-----------------SDLIPELQGRFPIRVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAI 371 (441)
T ss_pred ----h-----------------hhccHHHhCccceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHH
Confidence 0 11679999999999999999999999999 5678888888889999999999999
Q ss_pred HHHHhcCCC-----CCCCchHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEEee
Q 002012 902 TLLGILGFD-----PNFGARPVKRVIQQLVENEIAVAILKGDIKEEDSVIIDVD 950 (982)
Q Consensus 902 ~~L~~~~~~-----~~~gaR~L~~~i~~~l~~~la~~~l~~~~~~~~~i~v~~~ 950 (982)
+.|++..+. .+.|||+|+.++++++.....+. .-..+.++.|+.+
T Consensus 372 ~~IA~~A~~~N~~~~~iGAR~LrtilE~~l~d~~fe~----p~~~~~~v~I~~~ 421 (441)
T TIGR00390 372 KRIAELAYNVNEKTENIGARRLHTVLERLLEDISFEA----PDLSGQNITIDAD 421 (441)
T ss_pred HHHHHHHHHhcccccccchhhHHHHHHHHHHHHHhcC----CCCCCCEEEECHH
Confidence 999998765 68999999999999777766442 1123566666554
No 32
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=3.6e-20 Score=219.35 Aligned_cols=181 Identities=24% Similarity=0.286 Sum_probs=139.9
Q ss_pred CcccchHHHHHHHHHhcc---------CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEeccccc---
Q 002012 270 PVIGRDDEIRRCIQILSR---------RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLV--- 337 (982)
Q Consensus 270 ~liG~~~~i~~l~~~L~~---------~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~--- 337 (982)
-||||++.+..+.+.+.+ ++..++||.||+|||||.+|++||..+..+ ...++.+|||.++
T Consensus 492 rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~-------e~aliR~DMSEy~EkH 564 (786)
T COG0542 492 RVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGD-------EQALIRIDMSEYMEKH 564 (786)
T ss_pred ceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCC-------CccceeechHHHHHHH
Confidence 499999999999998865 344578999999999999999999999443 5789999999876
Q ss_pred -------ccccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCCC------------
Q 002012 338 -------AGTCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRGE------------ 398 (982)
Q Consensus 338 -------~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g~------------ 398 (982)
++..|.|.-+. ..+.++.+.++++|+++|||+... +++.|+|+++++.|+
T Consensus 565 sVSrLIGaPPGYVGyeeG---G~LTEaVRr~PySViLlDEIEKAH--------pdV~nilLQVlDdGrLTD~~Gr~VdFr 633 (786)
T COG0542 565 SVSRLIGAPPGYVGYEEG---GQLTEAVRRKPYSVILLDEIEKAH--------PDVFNLLLQVLDDGRLTDGQGRTVDFR 633 (786)
T ss_pred HHHHHhCCCCCCceeccc---cchhHhhhcCCCeEEEechhhhcC--------HHHHHHHHHHhcCCeeecCCCCEEecc
Confidence 35678887664 566666666888999999999876 899999999998763
Q ss_pred -eEEEEecCchhHh--h---------------------hhhcChHHHhccc-eEEecCCCHHHHHHHHHHHHHHHhh---
Q 002012 399 -LRCIGATTLNEYR--N---------------------YIEKDPALERRFQ-QVFCDQPSVENTISILRGLRERYEL--- 450 (982)
Q Consensus 399 -i~vI~at~~~~~~--~---------------------~~~~d~al~rRf~-~i~i~~Ps~~e~~~IL~~~~~~~~~--- 450 (982)
.++|+|+|--... + .....|+|++|++ .|.|.+.+.+++.+|+...+.+...
T Consensus 634 NtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~l~~~L~ 713 (786)
T COG0542 634 NTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNRLAKRLA 713 (786)
T ss_pred eeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4777777642110 0 0113699999998 7777777999999998766555443
Q ss_pred --hcCCccChHHHHHHHHHh
Q 002012 451 --HHGVKISDSALVSAAVLA 468 (982)
Q Consensus 451 --~~~v~i~~~~l~~~~~~s 468 (982)
...+.+++++...+++..
T Consensus 714 ~~~i~l~~s~~a~~~l~~~g 733 (786)
T COG0542 714 ERGITLELSDEAKDFLAEKG 733 (786)
T ss_pred hCCceEEECHHHHHHHHHhc
Confidence 344678899988887763
No 33
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.86 E-value=4.3e-21 Score=212.17 Aligned_cols=230 Identities=20% Similarity=0.326 Sum_probs=186.7
Q ss_pred cccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEecccccccccccccc
Q 002012 663 KRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRLV 742 (982)
Q Consensus 663 ~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l~ 742 (982)
..|||++.++..+.+.|.... +...++|+.|++||||..+|++|++.....+.|||.+||+.+.+.-..+.||
T Consensus 223 ~~iIG~S~am~~ll~~i~~VA-------~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesLlESELF 295 (550)
T COG3604 223 GGIIGRSPAMRQLLKEIEVVA-------KSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESLLESELF 295 (550)
T ss_pred ccceecCHHHHHHHHHHHHHh-------cCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchHHHHHHHh
Confidence 679999999999999998662 2223599999999999999999999998889999999999998877778899
Q ss_pred CCCCC-ccccccCCchhHHHhhCCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCChHHHH
Q 002012 743 GAPPG-YVGYEEGGQLTEVVRRRPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYIL 821 (982)
Q Consensus 743 g~~~g-~vg~~~~~~l~~~l~~~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~i~ 821 (982)
|...| +.|.... -.+.+.-+.++.||+|||..++..+|..||.+|.+|.+..-.|...---+++||++||.+....+
T Consensus 296 GHeKGAFTGA~~~--r~GrFElAdGGTLFLDEIGelPL~lQaKLLRvLQegEieRvG~~r~ikVDVRiIAATNRDL~~~V 373 (550)
T COG3604 296 GHEKGAFTGAINT--RRGRFELADGGTLFLDEIGELPLALQAKLLRVLQEGEIERVGGDRTIKVDVRVIAATNRDLEEMV 373 (550)
T ss_pred cccccccccchhc--cCcceeecCCCeEechhhccCCHHHHHHHHHHHhhcceeecCCCceeEEEEEEEeccchhHHHHH
Confidence 98766 3332211 12345567788999999999999999999999999999876665555567999999998876544
Q ss_pred HhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccc-cccCCCCh--hHHHHHHHHHHHHHHHHHHhCCCCccCCH
Q 002012 822 ETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEY-IVFQPLDS--KEISKIVEIQMNRVKDRLKQKKIDLHYTK 898 (982)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~i-i~F~pl~~--~~l~~il~~~l~~~~~~~~~~~~~l~i~~ 898 (982)
.. +.|+.+|++|++.+ +..|||.+ +|+.-++..+++++..++... .+.+++
T Consensus 374 ~~------------------------G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~--~l~ls~ 427 (550)
T COG3604 374 RD------------------------GEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRA--ILSLSA 427 (550)
T ss_pred Hc------------------------CcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCc--ccccCH
Confidence 32 55999999999764 56677765 899999999998877664332 589999
Q ss_pred HHHHHHHhcCCCCCCCchHHHHHHHHHHHHH
Q 002012 899 EAVTLLGILGFDPNFGARPVKRVIQQLVENE 929 (982)
Q Consensus 899 ~a~~~L~~~~~~~~~gaR~L~~~i~~~l~~~ 929 (982)
+|++.|..+.|++|. |+|+++|++.+.-+
T Consensus 428 ~Al~~L~~y~wPGNV--RELen~veRavlla 456 (550)
T COG3604 428 EALELLSSYEWPGNV--RELENVVERAVLLA 456 (550)
T ss_pred HHHHHHHcCCCCCcH--HHHHHHHHHHHHHh
Confidence 999999999999865 99999999965543
No 34
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=9e-21 Score=204.60 Aligned_cols=222 Identities=23% Similarity=0.442 Sum_probs=167.0
Q ss_pred eEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccccccccCCCCCccccccCCchhHHHhh-------CCCe
Q 002012 695 SFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRLVGAPPGYVGYEEGGQLTEVVRR-------RPYS 767 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~-------~~~~ 767 (982)
|+|+.||+|+|||.+|+.||+.+ +.||+.+||..+. ..||+|.+....|..++.. +..+
T Consensus 228 NvLllGPtGsGKTllaqTLAr~l---dVPfaIcDcTtLT-----------QAGYVGeDVEsvi~KLl~~A~~nVekAQqG 293 (564)
T KOG0745|consen 228 NVLLLGPTGSGKTLLAQTLARVL---DVPFAICDCTTLT-----------QAGYVGEDVESVIQKLLQEAEYNVEKAQQG 293 (564)
T ss_pred cEEEECCCCCchhHHHHHHHHHh---CCCeEEecccchh-----------hcccccccHHHHHHHHHHHccCCHHHHhcC
Confidence 69999999999999999999999 8999999999874 4689998776656665554 4567
Q ss_pred EEEEccccccC--------------HHHHHHHHHhhhcCceec---------CCCc--EEecccEEEEEecC-CChHHHH
Q 002012 768 VVLFDEIEKAH--------------QDVFNILLQLLDDGRITD---------SQGR--TVSFTNCVVIMTSN-IGSHYIL 821 (982)
Q Consensus 768 Vl~lDEidkl~--------------~~~~~~Ll~~le~g~~~d---------~~g~--~~~~~~~iiI~tsn-~~~~~i~ 821 (982)
||||||+||+. ..+|..||+++| |.+.. +.|. .+|.+|+.||+..- .+.+.+.
T Consensus 294 IVflDEvDKi~~~~~~i~~~RDVsGEGVQQaLLKllE-GtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I 372 (564)
T KOG0745|consen 294 IVFLDEVDKITKKAESIHTSRDVSGEGVQQALLKLLE-GTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKII 372 (564)
T ss_pred eEEEehhhhhcccCccccccccccchhHHHHHHHHhc-ccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHH
Confidence 99999999985 359999999998 44432 2233 46889999988766 3444443
Q ss_pred H-hh-----hhccc----------c---hHHH---HHHHHHHH--HHHHHhhcChHHHhccccccccCCCChhHHHHHHH
Q 002012 822 E-TL-----QSVQD----------S---KEAV---YEVMKKQV--VELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVE 877 (982)
Q Consensus 822 ~-~~-----~~~~~----------~---~~~~---~~~~~~~~--~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~ 877 (982)
. .+ .+... . .... ...+.+.+ .+.+.-.+-|||++||..+|+|.+|+++++.+++.
T Consensus 373 ~rR~~d~slGFg~~s~~~vr~~~~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfVGRfPVlVplh~L~~~~Lv~VLt 452 (564)
T KOG0745|consen 373 SRRLDDKSLGFGAPSSKGVRANMATKSGVENDAEKRDELLEKVESGDLISFGMIPEFVGRFPVLVPLHSLDEDQLVRVLT 452 (564)
T ss_pred HHhhcchhcccCCCCCccchhhcccccCcchhHHHHHHHHhhccccchhhhcCcHHHhcccceEeeccccCHHHHHHHHh
Confidence 2 21 11111 0 0000 11111111 24556678999999999999999999999999995
Q ss_pred HH----HHHHHHHHHhCCCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHH
Q 002012 878 IQ----MNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIA 931 (982)
Q Consensus 878 ~~----l~~~~~~~~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~l~~~la 931 (982)
.- +.+++..+...++.+.++++|++.+++.....+.|||+|+.++++++.+++.
T Consensus 453 EPknaL~~Qyk~lf~~~nV~L~fTe~Al~~IAq~Al~r~TGARgLRsIlE~~Lleamf 510 (564)
T KOG0745|consen 453 EPKNALGKQYKKLFGMDNVELHFTEKALEAIAQLALKRKTGARGLRSILESLLLEAMF 510 (564)
T ss_pred cchhhHHHHHHHHhccCCeeEEecHHHHHHHHHHHHhhccchHHHHHHHHHHHhhhcc
Confidence 44 5566666677789999999999999999999999999999999998877764
No 35
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=1.7e-20 Score=200.29 Aligned_cols=199 Identities=22% Similarity=0.327 Sum_probs=156.7
Q ss_pred cCCCCCcccchHHHHHHHHHh------------ccCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEe
Q 002012 265 SGKLDPVIGRDDEIRRCIQIL------------SRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLD 332 (982)
Q Consensus 265 ~~~l~~liG~~~~i~~l~~~L------------~~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~ 332 (982)
.-+.++|.|.++..+.+-+++ .++++.++|++||||||||.||+++|-+. +..|+.+.
T Consensus 208 ~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc----------~tTFFNVS 277 (491)
T KOG0738|consen 208 NIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATEC----------GTTFFNVS 277 (491)
T ss_pred CcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhh----------cCeEEEec
Confidence 347889999988877776644 24789999999999999999999999998 88999998
Q ss_pred cccccccccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHH----HHHhhhc-------C-CCeE
Q 002012 333 MASLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASN----MLKPMLG-------R-GELR 400 (982)
Q Consensus 333 ~~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~----~L~~~le-------~-g~i~ 400 (982)
.+.+. ++|+|+.|+.++-+|+.++- ..|.+|||||||.|...+.+.+..++.. -|+..|+ . ..|.
T Consensus 278 sstlt--SKwRGeSEKlvRlLFemARf-yAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~Vm 354 (491)
T KOG0738|consen 278 SSTLT--SKWRGESEKLVRLLFEMARF-YAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVM 354 (491)
T ss_pred hhhhh--hhhccchHHHHHHHHHHHHH-hCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEE
Confidence 88888 67999999999999988875 5688999999999998877666555443 3444443 1 2367
Q ss_pred EEEecCchhHhhhhhcChHHHhccc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCCcc
Q 002012 401 CIGATTLNEYRNYIEKDPALERRFQ-QVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLPD 479 (982)
Q Consensus 401 vI~at~~~~~~~~~~~d~al~rRf~-~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~p~ 479 (982)
|+++||.+. ++|.||+|||+ .|+|+.|+.+.+..+|+..+...+. .++-.++.+++.+++|. .+
T Consensus 355 VLAATN~PW-----diDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~~~-----~~~~~~~~lae~~eGyS-----Ga 419 (491)
T KOG0738|consen 355 VLAATNFPW-----DIDEALRRRLEKRIYIPLPDAEARSALIKILLRSVEL-----DDPVNLEDLAERSEGYS-----GA 419 (491)
T ss_pred EEeccCCCc-----chHHHHHHHHhhheeeeCCCHHHHHHHHHHhhccccC-----CCCccHHHHHHHhcCCC-----hH
Confidence 777777777 89999999998 9999999999999999877765221 22334667777766654 57
Q ss_pred hhhHHHHHHHHH
Q 002012 480 KAIDLVDEAAAK 491 (982)
Q Consensus 480 ~a~~lld~a~~~ 491 (982)
++..+|.+|...
T Consensus 420 DI~nvCreAsm~ 431 (491)
T KOG0738|consen 420 DITNVCREASMM 431 (491)
T ss_pred HHHHHHHHHHHH
Confidence 888888777654
No 36
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.84 E-value=7.5e-20 Score=204.21 Aligned_cols=227 Identities=21% Similarity=0.279 Sum_probs=176.9
Q ss_pred cccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccccccccCC
Q 002012 665 VIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRLVGA 744 (982)
Q Consensus 665 iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l~g~ 744 (982)
++|++.+++.+.+.+.+... ...++||.|++||||+.+|++|+......+.+|+.+||+.+.+......+||.
T Consensus 1 liG~S~~m~~~~~~~~~~a~-------~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~ 73 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAP-------LDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGH 73 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhC-------CCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhcc
Confidence 57999999999998887632 12249999999999999999999988666789999999987654434567887
Q ss_pred CCC-ccccccCCchhHHHhhCCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCChHHHHHh
Q 002012 745 PPG-YVGYEEGGQLTEVVRRRPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILET 823 (982)
Q Consensus 745 ~~g-~vg~~~~~~l~~~l~~~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~i~~~ 823 (982)
..| +.|.... -.+.+..+.+++||||||+.+++.+|..|+.+|+++.+....+......+++||++||........
T Consensus 74 ~~g~~~ga~~~--~~G~~~~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~- 150 (329)
T TIGR02974 74 EAGAFTGAQKR--HQGRFERADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAA- 150 (329)
T ss_pred ccccccCcccc--cCCchhhCCCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhh-
Confidence 554 3332211 234566778899999999999999999999999999877655444445789999999976554332
Q ss_pred hhhcccchHHHHHHHHHHHHHHHHhhcChHHHhcccc-ccccCCCC--hhHHHHHHHHHHHHHHHHHHhCCCCccCCHHH
Q 002012 824 LQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDE-YIVFQPLD--SKEISKIVEIQMNRVKDRLKQKKIDLHYTKEA 900 (982)
Q Consensus 824 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~-ii~F~pl~--~~~l~~il~~~l~~~~~~~~~~~~~l~i~~~a 900 (982)
.+.|+++|++|++. .|.+|||. .+|+..+++.++.++..++.. .+...+++++
T Consensus 151 -----------------------~g~fr~dL~~rl~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~-~~~~~ls~~a 206 (329)
T TIGR02974 151 -----------------------EGRFRADLLDRLAFDVITLPPLRERQEDIMLLAEHFAIRMARELGL-PLFPGFTPQA 206 (329)
T ss_pred -----------------------cCchHHHHHHHhcchhcCCCchhhhhhhHHHHHHHHHHHHHHHhCC-CCCCCcCHHH
Confidence 14588999999954 79999998 489999999999887654322 1115799999
Q ss_pred HHHHHhcCCCCCCCchHHHHHHHHHHH
Q 002012 901 VTLLGILGFDPNFGARPVKRVIQQLVE 927 (982)
Q Consensus 901 ~~~L~~~~~~~~~gaR~L~~~i~~~l~ 927 (982)
++.|..+.|++|+ |+|+++|++.+.
T Consensus 207 ~~~L~~y~WPGNv--rEL~n~i~~~~~ 231 (329)
T TIGR02974 207 REQLLEYHWPGNV--RELKNVVERSVY 231 (329)
T ss_pred HHHHHhCCCCchH--HHHHHHHHHHHH
Confidence 9999999999877 999999998554
No 37
>CHL00181 cbbX CbbX; Provisional
Probab=99.84 E-value=1.5e-19 Score=197.73 Aligned_cols=223 Identities=21% Similarity=0.350 Sum_probs=159.7
Q ss_pred HHHHHHHhhhcccccchHHHHHHHHHHH-------HHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCC----C
Q 002012 653 KLVMLEEVLHKRVIGQDIAVKSVADAIR-------RSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNT----E 721 (982)
Q Consensus 653 ~l~~l~~~l~~~iiGq~~a~~~l~~~i~-------~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~----~ 721 (982)
.+..+.+.|...++|++.++++|.+.+. +...|+..+.. ..+++|+||||||||++|+++|+.++.. .
T Consensus 13 ~~~~~~~~l~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~-~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~ 91 (287)
T CHL00181 13 QIQEVLDILDEELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNP-GLHMSFTGSPGTGKTTVALKMADILYKLGYIKK 91 (287)
T ss_pred CHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC-CceEEEECCCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 4567778888999999999998877652 12345554433 3469999999999999999999988532 2
Q ss_pred CceEEEeccccccccccccccCCCCCccccccCCchhHHHhhCCCeEEEEcccccc---------CHHHHHHHHHhhhcC
Q 002012 722 NALVRIDMSEYMEKHSVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEIEKA---------HQDVFNILLQLLDDG 792 (982)
Q Consensus 722 ~~~v~i~~s~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~~~~~Vl~lDEidkl---------~~~~~~~Ll~~le~g 792 (982)
.+++.++++++. .. |+|... ....+.+.++.++||||||++.+ ..++++.|++.|+++
T Consensus 92 ~~~~~v~~~~l~-----~~-------~~g~~~-~~~~~~l~~a~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~ 158 (287)
T CHL00181 92 GHLLTVTRDDLV-----GQ-------YIGHTA-PKTKEVLKKAMGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQ 158 (287)
T ss_pred CceEEecHHHHH-----HH-------Hhccch-HHHHHHHHHccCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcC
Confidence 357777765542 12 233222 12456677778899999999986 567999999999864
Q ss_pred ceecCCCcEEecccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHH
Q 002012 793 RITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEI 872 (982)
Q Consensus 793 ~~~d~~g~~~~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l 872 (982)
. .+++||++++...- ... -.+.|+|.+||+.+|.|+|++.+++
T Consensus 159 ~-----------~~~~vI~ag~~~~~--~~~------------------------~~~np~L~sR~~~~i~F~~~t~~el 201 (287)
T CHL00181 159 R-----------DDLVVIFAGYKDRM--DKF------------------------YESNPGLSSRIANHVDFPDYTPEEL 201 (287)
T ss_pred C-----------CCEEEEEeCCcHHH--HHH------------------------HhcCHHHHHhCCceEEcCCcCHHHH
Confidence 2 35888888764311 000 0146999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCccCCHHH----HHHHHhcCCCCCCC-chHHHHHHHHHHHHHHHHHHHc
Q 002012 873 SKIVEIQMNRVKDRLKQKKIDLHYTKEA----VTLLGILGFDPNFG-ARPVKRVIQQLVENEIAVAILK 936 (982)
Q Consensus 873 ~~il~~~l~~~~~~~~~~~~~l~i~~~a----~~~L~~~~~~~~~g-aR~L~~~i~~~l~~~la~~~l~ 936 (982)
.+|+...+++. + ..+++++ .+++...++.+.+| +|.+++++++.+...-.+ ++.
T Consensus 202 ~~I~~~~l~~~-------~--~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~~~~~~r-~~~ 260 (287)
T CHL00181 202 LQIAKIMLEEQ-------Q--YQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRARMRQANR-IFE 260 (287)
T ss_pred HHHHHHHHHHh-------c--CCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHHHHHH-HHc
Confidence 99999999873 2 3455554 45555556667788 999999999977665544 444
No 38
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.83 E-value=4.9e-20 Score=192.34 Aligned_cols=205 Identities=21% Similarity=0.242 Sum_probs=166.1
Q ss_pred hhHHHhhcCCCCCcccchHHHHHHHHHhccCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEeccccc
Q 002012 258 DLTELARSGKLDPVIGRDDEIRRCIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLV 337 (982)
Q Consensus 258 ~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~ 337 (982)
-|+++|||.+|++++||+..+..+.+.+.++..+|.|||||||||||+.|.++|+++.. +.+..+++.+++.++..
T Consensus 25 swteKYrPkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~----~~~~~~rvl~lnaSder 100 (346)
T KOG0989|consen 25 SWTEKYRPKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNC----EQLFPCRVLELNASDER 100 (346)
T ss_pred chHHHhCCCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcC----ccccccchhhhcccccc
Confidence 48999999999999999999999999999999999999999999999999999999965 45667888888877655
Q ss_pred ccccccccHHHHHHHHHHHHHh-----cCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcC--CCeEEEEecCchhH
Q 002012 338 AGTCYRGDFEKRLKAVLKEVTK-----SNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGR--GELRCIGATTLNEY 410 (982)
Q Consensus 338 ~~~~~~g~~e~~l~~l~~~~~~-----~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~--g~i~vI~at~~~~~ 410 (982)
+-. ...+-......+...... .....|++|||+|.|. .++++.|+..||+ ..++||..||+.+
T Consensus 101 Gis-vvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmt--------sdaq~aLrr~mE~~s~~trFiLIcnyls- 170 (346)
T KOG0989|consen 101 GIS-VVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMT--------SDAQAALRRTMEDFSRTTRFILICNYLS- 170 (346)
T ss_pred ccc-chhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhh--------HHHHHHHHHHHhccccceEEEEEcCChh-
Confidence 322 111111111111111110 1223699999999997 7889999999985 6889999999998
Q ss_pred hhhhhcChHHHhccceEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCCcchhhHHHHHHHH
Q 002012 411 RNYIEKDPALERRFQQVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLPDKAIDLVDEAAA 490 (982)
Q Consensus 411 ~~~~~~d~al~rRf~~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~p~~a~~lld~a~~ 490 (982)
.+.+.+.+||+.+.|+....++....|+.++.+ .++.+++++++.++..|++-+ ++|+..|+.+.-
T Consensus 171 ----rii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~----E~v~~d~~al~~I~~~S~GdL------R~Ait~Lqsls~ 236 (346)
T KOG0989|consen 171 ----RIIRPLVSRCQKFRFKKLKDEDIVDRLEKIASK----EGVDIDDDALKLIAKISDGDL------RRAITTLQSLSL 236 (346)
T ss_pred ----hCChHHHhhHHHhcCCCcchHHHHHHHHHHHHH----hCCCCCHHHHHHHHHHcCCcH------HHHHHHHHHhhc
Confidence 789999999999999999999999999999988 799999999999999998655 677777766553
No 39
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.83 E-value=2.2e-18 Score=212.57 Aligned_cols=179 Identities=19% Similarity=0.270 Sum_probs=130.1
Q ss_pred CCcccchHHHHHHHHHhcc---------CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccc-
Q 002012 269 DPVIGRDDEIRRCIQILSR---------RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVA- 338 (982)
Q Consensus 269 ~~liG~~~~i~~l~~~L~~---------~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~- 338 (982)
..++||++.++.+.+.+.+ ++..+++|+||||||||++|+.||+.+ +..++.+|++.+..
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l----------~~~~~~~d~se~~~~ 523 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL----------GVHLERFDMSEYMEK 523 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh----------cCCeEEEeCchhhhc
Confidence 3589999999999887764 123457999999999999999999988 67889999887643
Q ss_pred ---------cccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCCC-----------
Q 002012 339 ---------GTCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRGE----------- 398 (982)
Q Consensus 339 ---------~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g~----------- 398 (982)
...|.|.-+. ..+.+.++ ..+..||||||++.+. .++.+.|+++++.|.
T Consensus 524 ~~~~~lig~~~gyvg~~~~--~~l~~~~~-~~p~~VvllDEieka~--------~~~~~~Ll~~ld~g~~~d~~g~~vd~ 592 (731)
T TIGR02639 524 HTVSRLIGAPPGYVGFEQG--GLLTEAVR-KHPHCVLLLDEIEKAH--------PDIYNILLQVMDYATLTDNNGRKADF 592 (731)
T ss_pred ccHHHHhcCCCCCcccchh--hHHHHHHH-hCCCeEEEEechhhcC--------HHHHHHHHHhhccCeeecCCCcccCC
Confidence 2334443222 12223333 3567899999999886 788999999998763
Q ss_pred --eEEEEecCchh--Hh----------------h--hhhcChHHHhccc-eEEecCCCHHHHHHHHHHHHHHHhh---hc
Q 002012 399 --LRCIGATTLNE--YR----------------N--YIEKDPALERRFQ-QVFCDQPSVENTISILRGLRERYEL---HH 452 (982)
Q Consensus 399 --i~vI~at~~~~--~~----------------~--~~~~d~al~rRf~-~i~i~~Ps~~e~~~IL~~~~~~~~~---~~ 452 (982)
..+|+|+|... .. . .....|.|..||+ .|.|.+.+.+++..|++....++.. .+
T Consensus 593 ~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~ 672 (731)
T TIGR02639 593 RNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEK 672 (731)
T ss_pred CCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 45888876531 00 0 0125789999997 6677777999999999877665433 22
Q ss_pred --CCccChHHHHHHHHHh
Q 002012 453 --GVKISDSALVSAAVLA 468 (982)
Q Consensus 453 --~v~i~~~~l~~~~~~s 468 (982)
.+.++++++++++..+
T Consensus 673 ~~~l~i~~~a~~~La~~~ 690 (731)
T TIGR02639 673 NIKLELTDDAKKYLAEKG 690 (731)
T ss_pred CCeEEeCHHHHHHHHHhC
Confidence 3678999999988863
No 40
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=8.7e-20 Score=207.72 Aligned_cols=177 Identities=24% Similarity=0.388 Sum_probs=148.4
Q ss_pred CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccccccccccHHHHHHHHHHHHHhcCCCeEEE
Q 002012 288 RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILF 367 (982)
Q Consensus 288 ~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~ 367 (982)
.++..||||||||||||++|+++|.+. ++.++++...++. ++|.|+.|..++++|..+++ ..|+|+|
T Consensus 466 ~ppkGVLlyGPPGC~KT~lAkalAne~----------~~nFlsvkgpEL~--sk~vGeSEr~ir~iF~kAR~-~aP~IiF 532 (693)
T KOG0730|consen 466 SPPKGVLLYGPPGCGKTLLAKALANEA----------GMNFLSVKGPELF--SKYVGESERAIREVFRKARQ-VAPCIIF 532 (693)
T ss_pred CCCceEEEECCCCcchHHHHHHHhhhh----------cCCeeeccCHHHH--HHhcCchHHHHHHHHHHHhh-cCCeEEe
Confidence 467789999999999999999999998 9999999998898 57999999999999999997 4679999
Q ss_pred EccchhhhhCCCCCc---hhhHHHHHHhhhc----CCCeEEEEecCchhHhhhhhcChHHHh--ccc-eEEecCCCHHHH
Q 002012 368 IDELHTIIGAGNQSG---AMDASNMLKPMLG----RGELRCIGATTLNEYRNYIEKDPALER--RFQ-QVFCDQPSVENT 437 (982)
Q Consensus 368 IDEi~~l~~~~~~~~---~~~~~~~L~~~le----~g~i~vI~at~~~~~~~~~~~d~al~r--Rf~-~i~i~~Ps~~e~ 437 (982)
+||||.+.+++.+.. +..+.+.|+..|+ .++|.||+|||+++ .+|+|+.| ||+ .|+|+.|+.+.+
T Consensus 533 fDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd-----~ID~ALlRPGRlD~iiyVplPD~~aR 607 (693)
T KOG0730|consen 533 FDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPD-----MIDPALLRPGRLDRIIYVPLPDLEAR 607 (693)
T ss_pred hhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChh-----hcCHHHcCCcccceeEeecCccHHHH
Confidence 999999998875332 3446666666664 56899999999999 79999999 997 899999999999
Q ss_pred HHHHHHHHHHHhhhcCCccChH-HHHHHHHHhhhhhccCCCcchhhHHHHHHHHHhh
Q 002012 438 ISILRGLRERYELHHGVKISDS-ALVSAAVLADRYITERFLPDKAIDLVDEAAAKLK 493 (982)
Q Consensus 438 ~~IL~~~~~~~~~~~~v~i~~~-~l~~~~~~s~r~i~~~~~p~~a~~lld~a~~~~~ 493 (982)
.+||+...+++ .++++ .+..++.. +++|..++...++.+|+-.+-
T Consensus 608 ~~Ilk~~~kkm------p~~~~vdl~~La~~-----T~g~SGAel~~lCq~A~~~a~ 653 (693)
T KOG0730|consen 608 LEILKQCAKKM------PFSEDVDLEELAQA-----TEGYSGAEIVAVCQEAALLAL 653 (693)
T ss_pred HHHHHHHHhcC------CCCccccHHHHHHH-----hccCChHHHHHHHHHHHHHHH
Confidence 99999877764 45444 45666666 455667899999999986654
No 41
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=1.6e-19 Score=202.08 Aligned_cols=178 Identities=25% Similarity=0.408 Sum_probs=145.5
Q ss_pred CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccccccccccHHHHHHHHHHHHHhcCCCeEEE
Q 002012 288 RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILF 367 (982)
Q Consensus 288 ~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~ 367 (982)
..+.++||+||||||||.+|+++|++- +..|+++.-..|. .+|.|+.|..++.+|..++. ..|||+|
T Consensus 543 ~~PsGvLL~GPPGCGKTLlAKAVANEa----------g~NFisVKGPELl--NkYVGESErAVR~vFqRAR~-saPCVIF 609 (802)
T KOG0733|consen 543 DAPSGVLLCGPPGCGKTLLAKAVANEA----------GANFISVKGPELL--NKYVGESERAVRQVFQRARA-SAPCVIF 609 (802)
T ss_pred CCCCceEEeCCCCccHHHHHHHHhhhc----------cCceEeecCHHHH--HHHhhhHHHHHHHHHHHhhc-CCCeEEE
Confidence 457799999999999999999999987 8999999888888 57999999999999999987 6799999
Q ss_pred EccchhhhhCCCCCc---hhhHHHHHHhhhc----CCCeEEEEecCchhHhhhhhcChHHHh--ccc-eEEecCCCHHHH
Q 002012 368 IDELHTIIGAGNQSG---AMDASNMLKPMLG----RGELRCIGATTLNEYRNYIEKDPALER--RFQ-QVFCDQPSVENT 437 (982)
Q Consensus 368 IDEi~~l~~~~~~~~---~~~~~~~L~~~le----~g~i~vI~at~~~~~~~~~~~d~al~r--Rf~-~i~i~~Ps~~e~ 437 (982)
+||+|.|.+.+...+ +..+.|.|+..|+ +..|.||+|||+++ .+|||++| ||+ .+++..|+.+|+
T Consensus 610 FDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPD-----iIDpAiLRPGRlDk~LyV~lPn~~eR 684 (802)
T KOG0733|consen 610 FDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPD-----IIDPAILRPGRLDKLLYVGLPNAEER 684 (802)
T ss_pred ecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCc-----ccchhhcCCCccCceeeecCCCHHHH
Confidence 999999998765443 4566777777764 67899999999999 79999999 997 889999999999
Q ss_pred HHHHHHHHHHHhhhcCCccChHH-HHHHHHHhhhhhccCCCcchhhHHHHHHHH
Q 002012 438 ISILRGLRERYELHHGVKISDSA-LVSAAVLADRYITERFLPDKAIDLVDEAAA 490 (982)
Q Consensus 438 ~~IL~~~~~~~~~~~~v~i~~~~-l~~~~~~s~r~i~~~~~p~~a~~lld~a~~ 490 (982)
..||+.+.+. ++..+++++ ++.++..-. -+.|..++...|+.+|.-
T Consensus 685 ~~ILK~~tkn----~k~pl~~dVdl~eia~~~~---c~gftGADLaaLvreAsi 731 (802)
T KOG0733|consen 685 VAILKTITKN----TKPPLSSDVDLDEIARNTK---CEGFTGADLAALVREASI 731 (802)
T ss_pred HHHHHHHhcc----CCCCCCcccCHHHHhhccc---ccCCchhhHHHHHHHHHH
Confidence 9999988875 444554433 555554422 124566777777777664
No 42
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.82 E-value=1.2e-19 Score=191.69 Aligned_cols=204 Identities=22% Similarity=0.344 Sum_probs=150.0
Q ss_pred hhhhHHHhhcCCCCCcccchHHHHH---HHHHhccCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEe
Q 002012 256 GNDLTELARSGKLDPVIGRDDEIRR---CIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLD 332 (982)
Q Consensus 256 ~~~l~~~~~~~~l~~liG~~~~i~~---l~~~L~~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~ 332 (982)
..+|.+++||.+|+++|||++.+-. +...+....-++++|+||||||||+||+.|+..-.. ..+.++++
T Consensus 125 h~PLaermRPktL~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~-------~Syrfvel- 196 (554)
T KOG2028|consen 125 HKPLAERMRPKTLDDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKK-------HSYRFVEL- 196 (554)
T ss_pred cCChhhhcCcchHHHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCC-------CceEEEEE-
Confidence 4689999999999999999885522 222334577889999999999999999999976511 12344444
Q ss_pred cccccccccccccHHHHHHHHHHHHHh----cCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCCCeEEEEecCch
Q 002012 333 MASLVAGTCYRGDFEKRLKAVLKEVTK----SNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRGELRCIGATTLN 408 (982)
Q Consensus 333 ~~~l~~~~~~~g~~e~~l~~l~~~~~~----~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g~i~vI~at~~~ 408 (982)
++..++. ..++++|+..+. ..+..||||||||++.+. .++.+++.+|+|.|.+||+||.+
T Consensus 197 -SAt~a~t-------~dvR~ife~aq~~~~l~krkTilFiDEiHRFNks--------QQD~fLP~VE~G~I~lIGATTEN 260 (554)
T KOG2028|consen 197 -SATNAKT-------NDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKS--------QQDTFLPHVENGDITLIGATTEN 260 (554)
T ss_pred -eccccch-------HHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhh--------hhhcccceeccCceEEEecccCC
Confidence 4444332 245666665553 256789999999999844 34789999999999999999998
Q ss_pred hHhhhhhcChHHHhccceEEecCCCHHHHHHHHHHHHHHHhh---------hcCCccChHHHHHHHHHhhhhhccCCCcc
Q 002012 409 EYRNYIEKDPALERRFQQVFCDQPSVENTISILRGLRERYEL---------HHGVKISDSALVSAAVLADRYITERFLPD 479 (982)
Q Consensus 409 ~~~~~~~~d~al~rRf~~i~i~~Ps~~e~~~IL~~~~~~~~~---------~~~v~i~~~~l~~~~~~s~r~i~~~~~p~ 479 (982)
+ .|.++.+|.+||..+.+.....+....||.+-...+.. +..+.+++.++++++.++++.. +
T Consensus 261 P---SFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDa------R 331 (554)
T KOG2028|consen 261 P---SFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDA------R 331 (554)
T ss_pred C---ccchhHHHHhccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchH------H
Confidence 8 56899999999998888889999999999664443222 1134688999999999987542 4
Q ss_pred hhhHHHHHHHHHh
Q 002012 480 KAIDLVDEAAAKL 492 (982)
Q Consensus 480 ~a~~lld~a~~~~ 492 (982)
.+.+.+..+.+.+
T Consensus 332 ~aLN~Lems~~m~ 344 (554)
T KOG2028|consen 332 AALNALEMSLSMF 344 (554)
T ss_pred HHHHHHHHHHHHH
Confidence 4555555554433
No 43
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.82 E-value=3e-19 Score=203.32 Aligned_cols=204 Identities=21% Similarity=0.201 Sum_probs=160.6
Q ss_pred hhhHHHhhcCCCCCcccchHHHHHHHHHhccCCCCC-cEEeCCCCCcHHHHHHHHHHHhhcCCCCCC-------------
Q 002012 257 NDLTELARSGKLDPVIGRDDEIRRCIQILSRRTKNN-PVIIGEPGVGKTAIAEGLAQRIVRGDVPET------------- 322 (982)
Q Consensus 257 ~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~-iLL~GppGvGKT~la~~la~~l~~~~~p~~------------- 322 (982)
.+|.+++||.+|+++||+++.++.+...+..+...| +||+||+||||||+|+.+|+.+.+...+..
T Consensus 6 ~~L~~KyRP~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~ 85 (484)
T PRK14956 6 EVLSRKYRPQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEIT 85 (484)
T ss_pred chhHHHhCCCCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHH
Confidence 568999999999999999999999999888776666 699999999999999999999865421110
Q ss_pred -CCCCeEEEEecccccccccccccHHHHHHHHHHHHHh---cCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcC--
Q 002012 323 -LQNRKLISLDMASLVAGTCYRGDFEKRLKAVLKEVTK---SNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGR-- 396 (982)
Q Consensus 323 -l~~~~v~~l~~~~l~~~~~~~g~~e~~l~~l~~~~~~---~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~-- 396 (982)
.....++.+|.+. ..| .+.++++.+.+.. .++..|+||||+|+|. .+++|.|+..++.
T Consensus 86 ~g~~~dviEIdaas------~~g--Vd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls--------~~A~NALLKtLEEPp 149 (484)
T PRK14956 86 KGISSDVLEIDAAS------NRG--IENIRELRDNVKFAPMGGKYKVYIIDEVHMLT--------DQSFNALLKTLEEPP 149 (484)
T ss_pred ccCCccceeechhh------ccc--HHHHHHHHHHHHhhhhcCCCEEEEEechhhcC--------HHHHHHHHHHhhcCC
Confidence 0111344444321 111 2234455544442 2456799999999996 5678888888886
Q ss_pred CCeEEEEecCchhHhhhhhcChHHHhccceEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCC
Q 002012 397 GELRCIGATTLNEYRNYIEKDPALERRFQQVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERF 476 (982)
Q Consensus 397 g~i~vI~at~~~~~~~~~~~d~al~rRf~~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~ 476 (982)
+.+++|++||... .+.+++++||+.+.|..++.+++.+.|+.++.. .++.++++++..++..|++.
T Consensus 150 ~~viFILaTte~~-----kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~----Egi~~e~eAL~~Ia~~S~Gd----- 215 (484)
T PRK14956 150 AHIVFILATTEFH-----KIPETILSRCQDFIFKKVPLSVLQDYSEKLCKI----ENVQYDQEGLFWIAKKGDGS----- 215 (484)
T ss_pred CceEEEeecCChh-----hccHHHHhhhheeeecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCh-----
Confidence 7999999999876 789999999999999999999999999888876 68899999999999998865
Q ss_pred CcchhhHHHHHHHHH
Q 002012 477 LPDKAIDLVDEAAAK 491 (982)
Q Consensus 477 ~p~~a~~lld~a~~~ 491 (982)
+++++.++|.+++.
T Consensus 216 -~RdAL~lLeq~i~~ 229 (484)
T PRK14956 216 -VRDMLSFMEQAIVF 229 (484)
T ss_pred -HHHHHHHHHHHHHh
Confidence 48999999988764
No 44
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.81 E-value=3.6e-19 Score=213.12 Aligned_cols=228 Identities=19% Similarity=0.282 Sum_probs=179.7
Q ss_pred hcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccccccc
Q 002012 662 HKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRL 741 (982)
Q Consensus 662 ~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l 741 (982)
+..++|++.+++.+.+.+++... ...++||.|++||||+++|++|+......+.+|+.+||+.+.+......+
T Consensus 195 ~~~liG~s~~~~~~~~~~~~~a~-------~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~~~~~~l 267 (534)
T TIGR01817 195 EDGIIGKSPAMRQVVDQARVVAR-------SNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETLLESEL 267 (534)
T ss_pred cCceEECCHHHHHHHHHHHHHhC-------cCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHHHHHHHH
Confidence 47899999999999998887632 12249999999999999999999988767889999999998665444567
Q ss_pred cCCCCCc-cccccCCchhHHHhhCCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCChHHH
Q 002012 742 VGAPPGY-VGYEEGGQLTEVVRRRPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYI 820 (982)
Q Consensus 742 ~g~~~g~-vg~~~~~~l~~~l~~~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~i 820 (982)
||...|. .|.... -.+.+..+.+++||||||+.+++..|..|+++|+++.+....+......++.||+||+......
T Consensus 268 fg~~~~~~~~~~~~--~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~~l~~~ 345 (534)
T TIGR01817 268 FGHEKGAFTGAIAQ--RKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRDLEEA 345 (534)
T ss_pred cCCCCCccCCCCcC--CCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCCCHHHH
Confidence 8876542 232111 1234556678899999999999999999999999998876554444446789999999876533
Q ss_pred HHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhcccc-ccccCCCC--hhHHHHHHHHHHHHHHHHHHhCCCCccCC
Q 002012 821 LETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDE-YIVFQPLD--SKEISKIVEIQMNRVKDRLKQKKIDLHYT 897 (982)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~-ii~F~pl~--~~~l~~il~~~l~~~~~~~~~~~~~l~i~ 897 (982)
.. .+.|+++|++|++. .|.+|||. .+|+..+++.++.++.+++ +..+.++
T Consensus 346 ~~------------------------~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~---~~~~~~s 398 (534)
T TIGR01817 346 VA------------------------KGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNREN---GRPLTIT 398 (534)
T ss_pred HH------------------------cCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHc---CCCCCCC
Confidence 32 25599999999975 57889998 5899999999998876543 3337899
Q ss_pred HHHHHHHHhcCCCCCCCchHHHHHHHHHHH
Q 002012 898 KEAVTLLGILGFDPNFGARPVKRVIQQLVE 927 (982)
Q Consensus 898 ~~a~~~L~~~~~~~~~gaR~L~~~i~~~l~ 927 (982)
+++++.|..+.|++|+ |+|++++++.+.
T Consensus 399 ~~a~~~L~~~~WPGNv--rEL~~v~~~a~~ 426 (534)
T TIGR01817 399 PSAIRVLMSCKWPGNV--RELENCLERTAT 426 (534)
T ss_pred HHHHHHHHhCCCCChH--HHHHHHHHHHHH
Confidence 9999999999999877 999999998654
No 45
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=2.1e-19 Score=197.98 Aligned_cols=206 Identities=24% Similarity=0.350 Sum_probs=161.0
Q ss_pred hcCCCCCcccchH---HHHHHHHHhcc---------CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEE
Q 002012 264 RSGKLDPVIGRDD---EIRRCIQILSR---------RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISL 331 (982)
Q Consensus 264 ~~~~l~~liG~~~---~i~~l~~~L~~---------~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l 331 (982)
..-+|++|-|-++ |++.+++.|.. +=+.++||+||||||||.||+++|.+. +.++++.
T Consensus 299 ~nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA----------~VPFF~~ 368 (752)
T KOG0734|consen 299 KNVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA----------GVPFFYA 368 (752)
T ss_pred cccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc----------CCCeEec
Confidence 3457999999987 77777877765 235689999999999999999999887 8888888
Q ss_pred ecccccccccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCch---hhHHHHHHhhhc----CCCeEEEEe
Q 002012 332 DMASLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGA---MDASNMLKPMLG----RGELRCIGA 404 (982)
Q Consensus 332 ~~~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~---~~~~~~L~~~le----~g~i~vI~a 404 (982)
.-+.+. -.|.|....+++++|..++. ..||||||||||.+.+.+..... ....|.|+-.|+ +..|+||+|
T Consensus 369 sGSEFd--Em~VGvGArRVRdLF~aAk~-~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigA 445 (752)
T KOG0734|consen 369 SGSEFD--EMFVGVGARRVRDLFAAAKA-RAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGA 445 (752)
T ss_pred cccchh--hhhhcccHHHHHHHHHHHHh-cCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEec
Confidence 766665 45889999999999999987 67999999999999776654433 233344444443 558999999
Q ss_pred cCchhHhhhhhcChHHHh--ccc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCCcchh
Q 002012 405 TTLNEYRNYIEKDPALER--RFQ-QVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLPDKA 481 (982)
Q Consensus 405 t~~~~~~~~~~~d~al~r--Rf~-~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~p~~a 481 (982)
||.++ .+|+||.| ||+ .|.++.|+..-+.+||..+..+.. ++-.++..++ ++- +.+|...+.
T Consensus 446 TNfpe-----~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~--~~~~VD~~ii---ARG-----T~GFsGAdL 510 (752)
T KOG0734|consen 446 TNFPE-----ALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIP--LDEDVDPKII---ARG-----TPGFSGADL 510 (752)
T ss_pred cCChh-----hhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCC--cccCCCHhHh---ccC-----CCCCchHHH
Confidence 99999 89999999 997 999999999999999988877632 3333444443 222 445677889
Q ss_pred hHHHHHHHHHhhhhcc
Q 002012 482 IDLVDEAAAKLKMEIT 497 (982)
Q Consensus 482 ~~lld~a~~~~~~~~~ 497 (982)
.+|+..|+-++.....
T Consensus 511 aNlVNqAAlkAa~dga 526 (752)
T KOG0734|consen 511 ANLVNQAALKAAVDGA 526 (752)
T ss_pred HHHHHHHHHHHHhcCc
Confidence 9999999988776654
No 46
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.81 E-value=8.5e-19 Score=196.05 Aligned_cols=230 Identities=18% Similarity=0.262 Sum_probs=176.1
Q ss_pred hcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccccccc
Q 002012 662 HKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRL 741 (982)
Q Consensus 662 ~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l 741 (982)
.+.++|.+.+++.+.+.+.+... ...++||.|++||||+.+|++|+......+.+|+.+||+.+.+..-...+
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a~-------~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~~~l 77 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLAP-------LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSEL 77 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHhC-------CCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHHHHH
Confidence 35799999999999999887632 11249999999999999999999877656789999999997643323457
Q ss_pred cCCCCC-ccccccCCchhHHHhhCCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCChHHH
Q 002012 742 VGAPPG-YVGYEEGGQLTEVVRRRPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYI 820 (982)
Q Consensus 742 ~g~~~g-~vg~~~~~~l~~~l~~~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~i 820 (982)
||...+ +.|.... ..+.+..+.+++||||||+.+++.+|..|+.++++|.+....+......+++||+||+.....+
T Consensus 78 fg~~~~~~~g~~~~--~~g~l~~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~l~~l 155 (326)
T PRK11608 78 FGHEAGAFTGAQKR--HPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAM 155 (326)
T ss_pred ccccccccCCcccc--cCCchhccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchhHHHH
Confidence 776543 2232211 1345567778999999999999999999999999998765444333335799999999876543
Q ss_pred HHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhcccc-ccccCCCCh--hHHHHHHHHHHHHHHHHHHhCCCCccCC
Q 002012 821 LETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDE-YIVFQPLDS--KEISKIVEIQMNRVKDRLKQKKIDLHYT 897 (982)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~-ii~F~pl~~--~~l~~il~~~l~~~~~~~~~~~~~l~i~ 897 (982)
.. .+.|+++|++||.. .|..|||.+ +|+..++..++.++..++.. .+...++
T Consensus 156 ~~------------------------~g~f~~dL~~~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~-~~~~~~s 210 (326)
T PRK11608 156 VA------------------------EGKFRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGL-PLFPGFT 210 (326)
T ss_pred HH------------------------cCCchHHHHHhcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCC-CCCCCCC
Confidence 33 14588999999954 788999986 79999999999887544322 1124799
Q ss_pred HHHHHHHHhcCCCCCCCchHHHHHHHHHHH
Q 002012 898 KEAVTLLGILGFDPNFGARPVKRVIQQLVE 927 (982)
Q Consensus 898 ~~a~~~L~~~~~~~~~gaR~L~~~i~~~l~ 927 (982)
+++++.|..+.|++|+ |+|++++++.+.
T Consensus 211 ~~al~~L~~y~WPGNv--rEL~~vl~~a~~ 238 (326)
T PRK11608 211 ERARETLLNYRWPGNI--RELKNVVERSVY 238 (326)
T ss_pred HHHHHHHHhCCCCcHH--HHHHHHHHHHHH
Confidence 9999999999999877 899999998554
No 47
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.81 E-value=6.3e-17 Score=187.90 Aligned_cols=169 Identities=23% Similarity=0.358 Sum_probs=123.7
Q ss_pred eEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccccccccCCCCCccccccC--CchhHHHhhCCCeEEEEc
Q 002012 695 SFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRLVGAPPGYVGYEEG--GQLTEVVRRRPYSVVLFD 772 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l~g~~~g~vg~~~~--~~l~~~l~~~~~~Vl~lD 772 (982)
.+||+||||||||.+|+++|..+ +.+++.++++.+.. +|+|..+. +.++...+...++|||||
T Consensus 261 GILL~GPpGTGKTllAkaiA~e~---~~~~~~l~~~~l~~------------~~vGese~~l~~~f~~A~~~~P~IL~ID 325 (489)
T CHL00195 261 GLLLVGIQGTGKSLTAKAIANDW---QLPLLRLDVGKLFG------------GIVGESESRMRQMIRIAEALSPCILWID 325 (489)
T ss_pred eEEEECCCCCcHHHHHHHHHHHh---CCCEEEEEhHHhcc------------cccChHHHHHHHHHHHHHhcCCcEEEeh
Confidence 49999999999999999999998 78999999887532 24443332 245555667778999999
Q ss_pred cccccCH------------HHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHH
Q 002012 773 EIEKAHQ------------DVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKK 840 (982)
Q Consensus 773 Eidkl~~------------~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~ 840 (982)
|||++.. .+++.|+..|++. ..+++||+|||....
T Consensus 326 EID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~-----------~~~V~vIaTTN~~~~---------------------- 372 (489)
T CHL00195 326 EIDKAFSNSESKGDSGTTNRVLATFITWLSEK-----------KSPVFVVATANNIDL---------------------- 372 (489)
T ss_pred hhhhhhccccCCCCchHHHHHHHHHHHHHhcC-----------CCceEEEEecCChhh----------------------
Confidence 9998743 2456666666642 135789999996543
Q ss_pred HHHHHHHhhcChHHHh--ccccccccCCCChhHHHHHHHHHHHHHHHHHHhCCCCccCCHHHHHHHHhcCCCCCCCchHH
Q 002012 841 QVVELARQTFRPEFLN--RIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPV 918 (982)
Q Consensus 841 ~~~~~~~~~f~p~ll~--Rid~ii~F~pl~~~~l~~il~~~l~~~~~~~~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L 918 (982)
++|+++. |||.++.++.++.++..+|++.++.+.. . ...++.-++.|+.. ...|.+++|
T Consensus 373 ---------Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~-------~-~~~~~~dl~~La~~--T~GfSGAdI 433 (489)
T CHL00195 373 ---------LPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFR-------P-KSWKKYDIKKLSKL--SNKFSGAEI 433 (489)
T ss_pred ---------CCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcC-------C-CcccccCHHHHHhh--cCCCCHHHH
Confidence 7888874 9999999999999999999999998621 1 11223335667764 345777899
Q ss_pred HHHHHHHHHHHH
Q 002012 919 KRVIQQLVENEI 930 (982)
Q Consensus 919 ~~~i~~~l~~~l 930 (982)
++++......++
T Consensus 434 ~~lv~eA~~~A~ 445 (489)
T CHL00195 434 EQSIIEAMYIAF 445 (489)
T ss_pred HHHHHHHHHHHH
Confidence 988887555443
No 48
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.81 E-value=8.5e-18 Score=209.70 Aligned_cols=181 Identities=19% Similarity=0.256 Sum_probs=128.8
Q ss_pred CCcccchHHHHHHHHHhcc-------C--CCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccc-
Q 002012 269 DPVIGRDDEIRRCIQILSR-------R--TKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVA- 338 (982)
Q Consensus 269 ~~liG~~~~i~~l~~~L~~-------~--~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~- 338 (982)
..|+||++.++.+...+.+ . +..++||+||||||||++|++||+.+... +..++.+|++.+..
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~-------~~~~~~~d~s~~~~~ 581 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGS-------EDAMIRLDMSEYMEK 581 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCC-------ccceEEEEchhcccc
Confidence 4599999999999887753 1 12357899999999999999999998433 45788888877642
Q ss_pred ---------cccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCC------------
Q 002012 339 ---------GTCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRG------------ 397 (982)
Q Consensus 339 ---------~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g------------ 397 (982)
+..|.|..+. ..+.+.++ .++..|++|||++.+. .++.+.|+++++.|
T Consensus 582 ~~~~~l~g~~~gyvg~~~~--~~l~~~~~-~~p~~VvllDeieka~--------~~v~~~Llq~le~g~~~d~~g~~v~~ 650 (821)
T CHL00095 582 HTVSKLIGSPPGYVGYNEG--GQLTEAVR-KKPYTVVLFDEIEKAH--------PDIFNLLLQILDDGRLTDSKGRTIDF 650 (821)
T ss_pred ccHHHhcCCCCcccCcCcc--chHHHHHH-hCCCeEEEECChhhCC--------HHHHHHHHHHhccCceecCCCcEEec
Confidence 2335543222 12333333 3566899999999886 78999999999875
Q ss_pred -CeEEEEecCchh-----------------------Hhh---------hhhcChHHHhccc-eEEecCCCHHHHHHHHHH
Q 002012 398 -ELRCIGATTLNE-----------------------YRN---------YIEKDPALERRFQ-QVFCDQPSVENTISILRG 443 (982)
Q Consensus 398 -~i~vI~at~~~~-----------------------~~~---------~~~~d~al~rRf~-~i~i~~Ps~~e~~~IL~~ 443 (982)
+..+|+|+|... |.. .-...|.|.+|++ .|.|.+.+.+++.+|++.
T Consensus 651 ~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~ 730 (821)
T CHL00095 651 KNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEI 730 (821)
T ss_pred CceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHHHH
Confidence 347888877421 000 0014688999996 677777799999999876
Q ss_pred HHHHHhh---h--cCCccChHHHHHHHHH
Q 002012 444 LRERYEL---H--HGVKISDSALVSAAVL 467 (982)
Q Consensus 444 ~~~~~~~---~--~~v~i~~~~l~~~~~~ 467 (982)
.+.++.. . ..+.++++++..++..
T Consensus 731 ~l~~l~~rl~~~~i~l~~~~~~~~~La~~ 759 (821)
T CHL00095 731 MLKNLFKRLNEQGIQLEVTERIKTLLIEE 759 (821)
T ss_pred HHHHHHHHHHHCCcEEEECHHHHHHHHHh
Confidence 6655432 2 2467899999988886
No 49
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.81 E-value=1.4e-18 Score=190.48 Aligned_cols=222 Identities=21% Similarity=0.352 Sum_probs=157.2
Q ss_pred HHHHHHhhhcccccchHHHHHHHHHHHH-------HhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCC----CC
Q 002012 654 LVMLEEVLHKRVIGQDIAVKSVADAIRR-------SRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNT----EN 722 (982)
Q Consensus 654 l~~l~~~l~~~iiGq~~a~~~l~~~i~~-------~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~----~~ 722 (982)
+..+.+.+...++|.++++++|.+.+.. ...|+.. ..|..+++|+||||||||++|+++|+.+... ..
T Consensus 13 ~~~~~~~l~~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~-~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~ 91 (284)
T TIGR02880 13 ITEVLDQLDRELIGLKPVKTRIREIAALLLVERLRQRLGLAS-AAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKG 91 (284)
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCc-CCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccc
Confidence 4455666777899999999998775432 2335443 2344469999999999999999999988432 23
Q ss_pred ceEEEeccccccccccccccCCCCCccccccCCchhHHHhhCCCeEEEEcccccc---------CHHHHHHHHHhhhcCc
Q 002012 723 ALVRIDMSEYMEKHSVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEIEKA---------HQDVFNILLQLLDDGR 793 (982)
Q Consensus 723 ~~v~i~~s~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~~~~~Vl~lDEidkl---------~~~~~~~Ll~~le~g~ 793 (982)
+++.++++++. ..++| ... ..+.+.+.++.++||||||++.+ +.++++.|++.|+++.
T Consensus 92 ~~v~v~~~~l~-----~~~~g-------~~~-~~~~~~~~~a~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~ 158 (284)
T TIGR02880 92 HLVSVTRDDLV-----GQYIG-------HTA-PKTKEILKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQR 158 (284)
T ss_pred eEEEecHHHHh-----Hhhcc-------cch-HHHHHHHHHccCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCC
Confidence 68888876542 12333 222 22556777777899999999977 4668899999998643
Q ss_pred eecCCCcEEecccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHH
Q 002012 794 ITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEIS 873 (982)
Q Consensus 794 ~~d~~g~~~~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~ 873 (982)
.++++|++++....... ..+.|+|.+||+..|.|+||+.+++.
T Consensus 159 -----------~~~~vI~a~~~~~~~~~--------------------------~~~np~L~sR~~~~i~fp~l~~edl~ 201 (284)
T TIGR02880 159 -----------DDLVVILAGYKDRMDSF--------------------------FESNPGFSSRVAHHVDFPDYSEAELL 201 (284)
T ss_pred -----------CCEEEEEeCCcHHHHHH--------------------------HhhCHHHHhhCCcEEEeCCcCHHHHH
Confidence 46888888875321000 12589999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCccCCHHHHHHHHhc----CCCCCC-CchHHHHHHHHHHHHHHHHHHHc
Q 002012 874 KIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGIL----GFDPNF-GARPVKRVIQQLVENEIAVAILK 936 (982)
Q Consensus 874 ~il~~~l~~~~~~~~~~~~~l~i~~~a~~~L~~~----~~~~~~-gaR~L~~~i~~~l~~~la~~~l~ 936 (982)
+|+..++++.. ..+++++.+.|..+ ...+.+ ++|.|++++++.+...-. .+..
T Consensus 202 ~I~~~~l~~~~---------~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~~~~~-r~~~ 259 (284)
T TIGR02880 202 VIAGLMLKEQQ---------YRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRARLRQAN-RLFC 259 (284)
T ss_pred HHHHHHHHHhc---------cccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHH-HHhc
Confidence 99999988732 45778888777665 222223 379999999997665544 4444
No 50
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.81 E-value=8.4e-19 Score=205.80 Aligned_cols=204 Identities=21% Similarity=0.207 Sum_probs=159.6
Q ss_pred hhHHHhhcCCCCCcccchHHHHHHHHHhccCCCCCc-EEeCCCCCcHHHHHHHHHHHhhcCCCCCC--------------
Q 002012 258 DLTELARSGKLDPVIGRDDEIRRCIQILSRRTKNNP-VIIGEPGVGKTAIAEGLAQRIVRGDVPET-------------- 322 (982)
Q Consensus 258 ~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~i-LL~GppGvGKT~la~~la~~l~~~~~p~~-------------- 322 (982)
.|.++|||.+|+++||+++.++.+.+.+..+...|. ||+||+||||||+++.|++.+.+......
T Consensus 5 vLarKYRPqtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~ 84 (830)
T PRK07003 5 VLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDE 84 (830)
T ss_pred hHHHHhCCCcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhc
Confidence 489999999999999999999999999888776676 88999999999999999999965321100
Q ss_pred CCCCeEEEEecccccccccccccHHHHHHHHHHHHHh---cCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcC--C
Q 002012 323 LQNRKLISLDMASLVAGTCYRGDFEKRLKAVLKEVTK---SNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGR--G 397 (982)
Q Consensus 323 l~~~~v~~l~~~~l~~~~~~~g~~e~~l~~l~~~~~~---~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~--g 397 (982)
.....++++|.++- + ..+.++.+++.+.. .++..|+||||+|+|. ...+|.|+..||. .
T Consensus 85 G~h~DviEIDAas~------r--gVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT--------~~A~NALLKtLEEPP~ 148 (830)
T PRK07003 85 GRFVDYVEMDAASN------R--GVDEMAALLERAVYAPVDARFKVYMIDEVHMLT--------NHAFNAMLKTLEEPPP 148 (830)
T ss_pred CCCceEEEeccccc------c--cHHHHHHHHHHHHhccccCCceEEEEeChhhCC--------HHHHHHHHHHHHhcCC
Confidence 00123555553321 1 12234555555432 1345699999999996 4567888888875 5
Q ss_pred CeEEEEecCchhHhhhhhcChHHHhccceEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCC
Q 002012 398 ELRCIGATTLNEYRNYIEKDPALERRFQQVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFL 477 (982)
Q Consensus 398 ~i~vI~at~~~~~~~~~~~d~al~rRf~~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~ 477 (982)
++.||++||... .+.+.+++||+.+.|..++.+++.+.|+.++.. .++.++++++..++..+++.+
T Consensus 149 ~v~FILaTtd~~-----KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~----EgI~id~eAL~lIA~~A~Gsm----- 214 (830)
T PRK07003 149 HVKFILATTDPQ-----KIPVTVLSRCLQFNLKQMPAGHIVSHLERILGE----ERIAFEPQALRLLARAAQGSM----- 214 (830)
T ss_pred CeEEEEEECChh-----hccchhhhheEEEecCCcCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH-----
Confidence 899999999877 678999999999999999999999999988876 688999999999999988654
Q ss_pred cchhhHHHHHHHHHh
Q 002012 478 PDKAIDLVDEAAAKL 492 (982)
Q Consensus 478 p~~a~~lld~a~~~~ 492 (982)
++++++++.++.+.
T Consensus 215 -RdALsLLdQAia~~ 228 (830)
T PRK07003 215 -RDALSLTDQAIAYS 228 (830)
T ss_pred -HHHHHHHHHHHHhc
Confidence 88999999988653
No 51
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.80 E-value=1.1e-18 Score=206.90 Aligned_cols=230 Identities=20% Similarity=0.265 Sum_probs=179.9
Q ss_pred hcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccccccc
Q 002012 662 HKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRL 741 (982)
Q Consensus 662 ~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l 741 (982)
...++|++.+++.+.+.+.+.... ..++||+|++||||+.+|++|+......+.+|+.+||+.+.+....+.+
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~~-------~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~e~~l 258 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAAS-------DLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAESEL 258 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhCC-------CCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHHHHHh
Confidence 367999999999999999876321 1249999999999999999999988767789999999998654334568
Q ss_pred cCCCCC-ccccccCCchhHHHhhCCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCChHHH
Q 002012 742 VGAPPG-YVGYEEGGQLTEVVRRRPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYI 820 (982)
Q Consensus 742 ~g~~~g-~vg~~~~~~l~~~l~~~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~i 820 (982)
||...| +.|.... -.+.+..+.+++||||||+.+++.+|..|+++|+++.+....+......++.||++||......
T Consensus 259 fG~~~g~~~ga~~~--~~g~~~~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~ 336 (509)
T PRK05022 259 FGHVKGAFTGAISN--RSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDLREE 336 (509)
T ss_pred cCccccccCCCccc--CCcchhhcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCCCHHHH
Confidence 886544 2332211 1234566778999999999999999999999999998765444444446799999999876543
Q ss_pred HHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhcccc-ccccCCCCh--hHHHHHHHHHHHHHHHHHHhCCCCccCC
Q 002012 821 LETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDE-YIVFQPLDS--KEISKIVEIQMNRVKDRLKQKKIDLHYT 897 (982)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~-ii~F~pl~~--~~l~~il~~~l~~~~~~~~~~~~~l~i~ 897 (982)
.. .+.|+++|++|+.. .|..|||.+ +|+..+++.+++++..++... .+.++
T Consensus 337 ~~------------------------~~~f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~--~~~~s 390 (509)
T PRK05022 337 VR------------------------AGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLR--SLRLS 390 (509)
T ss_pred HH------------------------cCCccHHHHhcccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCC--CCCCC
Confidence 32 24599999999975 488999986 789999999998876554322 36899
Q ss_pred HHHHHHHHhcCCCCCCCchHHHHHHHHHHHH
Q 002012 898 KEAVTLLGILGFDPNFGARPVKRVIQQLVEN 928 (982)
Q Consensus 898 ~~a~~~L~~~~~~~~~gaR~L~~~i~~~l~~ 928 (982)
+++++.|..+.|++|+ |+|+++|++.+..
T Consensus 391 ~~a~~~L~~y~WPGNv--rEL~~~i~ra~~~ 419 (509)
T PRK05022 391 PAAQAALLAYDWPGNV--RELEHVISRAALL 419 (509)
T ss_pred HHHHHHHHhCCCCCcH--HHHHHHHHHHHHh
Confidence 9999999999999877 9999999985543
No 52
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.80 E-value=1e-18 Score=204.73 Aligned_cols=227 Identities=19% Similarity=0.273 Sum_probs=175.0
Q ss_pred hcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHH--------hcCCCCceEEEeccccc
Q 002012 662 HKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADF--------LFNTENALVRIDMSEYM 733 (982)
Q Consensus 662 ~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~--------l~~~~~~~v~i~~s~~~ 733 (982)
+..++|++.++..+.+.+.+... ...++||.|++||||+.+|++|+.. ....+.||+.+||+.+.
T Consensus 218 f~~iiG~S~~m~~~~~~i~~~A~-------s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~ 290 (538)
T PRK15424 218 LGDLLGQSPQMEQVRQTILLYAR-------SSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIA 290 (538)
T ss_pred hhheeeCCHHHHHHHHHHHHHhC-------CCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCC
Confidence 35699999999999999876522 1224999999999999999999998 44567899999999987
Q ss_pred cccccccccCCCCC-ccccccCCchhHHHhhCCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEEe
Q 002012 734 EKHSVSRLVGAPPG-YVGYEEGGQLTEVVRRRPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMT 812 (982)
Q Consensus 734 ~~~~~~~l~g~~~g-~vg~~~~~~l~~~l~~~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~t 812 (982)
+..-.+.|||...| +.|...++ -.+.+..+.+++||||||+.+++..|..|+.+|+++.+....+...-..++.+|++
T Consensus 291 e~lleseLFG~~~gaftga~~~~-~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~r~G~~~~~~~dvRiIaa 369 (538)
T PRK15424 291 ESLLEAELFGYEEGAFTGSRRGG-RAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISA 369 (538)
T ss_pred hhhHHHHhcCCccccccCccccc-cCCchhccCCCEEEEcChHhCCHHHHHHHHhhhhcCeEEecCCCceeccceEEEEe
Confidence 65545678887655 33332111 23456677889999999999999999999999999988765544444467899999
Q ss_pred cCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhcccc-ccccCCCCh--hHHHHHHHHHHHHHHHHHHh
Q 002012 813 SNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDE-YIVFQPLDS--KEISKIVEIQMNRVKDRLKQ 889 (982)
Q Consensus 813 sn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~-ii~F~pl~~--~~l~~il~~~l~~~~~~~~~ 889 (982)
||........ .+.|+++|++|+.. .|..|||.+ +|+..++..+++++...+
T Consensus 370 t~~~L~~~v~------------------------~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~-- 423 (538)
T PRK15424 370 THCDLEEDVR------------------------QGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAAL-- 423 (538)
T ss_pred cCCCHHHHHh------------------------cccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHc--
Confidence 9987654333 14589999999965 688899986 789999999998765432
Q ss_pred CCCCccCCHHHH-------HHHHhcCCCCCCCchHHHHHHHHHHH
Q 002012 890 KKIDLHYTKEAV-------TLLGILGFDPNFGARPVKRVIQQLVE 927 (982)
Q Consensus 890 ~~~~l~i~~~a~-------~~L~~~~~~~~~gaR~L~~~i~~~l~ 927 (982)
+ ..++++++ +.|..+.|++|+ |+|++++++++.
T Consensus 424 -~--~~~~~~a~~~~~~a~~~L~~y~WPGNv--REL~nvier~~i 463 (538)
T PRK15424 424 -S--APFSAALRQGLQQCETLLLHYDWPGNV--RELRNLMERLAL 463 (538)
T ss_pred -C--CCCCHHHHHhhHHHHHHHHhCCCCchH--HHHHHHHHHHHH
Confidence 2 23666554 789999999876 999999999654
No 53
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.80 E-value=6e-19 Score=196.18 Aligned_cols=229 Identities=17% Similarity=0.284 Sum_probs=177.2
Q ss_pred HHhhhcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcC-CCCceEEEecccccccc
Q 002012 658 EEVLHKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFN-TENALVRIDMSEYMEKH 736 (982)
Q Consensus 658 ~~~l~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~-~~~~~v~i~~s~~~~~~ 736 (982)
.......++|.+...+.+.+.++.. +.... ++|+.|++||||+.+|++|+...-. .+.|||.+||+.|.+..
T Consensus 73 ~~~~~~~LIG~~~~~~~~~eqik~~------ap~~~-~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~ 145 (403)
T COG1221 73 KSEALDDLIGESPSLQELREQIKAY------APSGL-PVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENL 145 (403)
T ss_pred cchhhhhhhccCHHHHHHHHHHHhh------CCCCC-cEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCH
Confidence 3445578999999999999988863 12222 4999999999999999999966555 57899999999999887
Q ss_pred ccccccCCCCC-ccccccCCchhHHHhhCCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEEecCC
Q 002012 737 SVSRLVGAPPG-YVGYEEGGQLTEVVRRRPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNI 815 (982)
Q Consensus 737 ~~~~l~g~~~g-~vg~~~~~~l~~~l~~~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~ 815 (982)
....|||...| +.|...+ -.+.+..+.+++||+|||..+++..|..|+++||+|.++.-.+......++.+|++||.
T Consensus 146 ~~~eLFG~~kGaftGa~~~--k~Glfe~A~GGtLfLDEI~~LP~~~Q~kLl~~le~g~~~rvG~~~~~~~dVRli~AT~~ 223 (403)
T COG1221 146 QEAELFGHEKGAFTGAQGG--KAGLFEQANGGTLFLDEIHRLPPEGQEKLLRVLEEGEYRRVGGSQPRPVDVRLICATTE 223 (403)
T ss_pred HHHHHhccccceeecccCC--cCchheecCCCEEehhhhhhCCHhHHHHHHHHHHcCceEecCCCCCcCCCceeeecccc
Confidence 77789998776 5663333 35678889999999999999999999999999999999866555555688999999997
Q ss_pred ChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHh-ccccccccCCCCh--hHHHHHHHHHHHHHHHHHHhCCC
Q 002012 816 GSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLN-RIDEYIVFQPLDS--KEISKIVEIQMNRVKDRLKQKKI 892 (982)
Q Consensus 816 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~-Rid~ii~F~pl~~--~~l~~il~~~l~~~~~~~~~~~~ 892 (982)
....... .+ .+|.. ++..+|..|||.+ +|+..+++.++..+..+ .+.
T Consensus 224 ~l~~~~~-------------------------~g--~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~---l~~ 273 (403)
T COG1221 224 DLEEAVL-------------------------AG--ADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARR---LGL 273 (403)
T ss_pred CHHHHHH-------------------------hh--cchhhhhcCceecCCChhhchhhHHHHHHHHHHHHHHH---cCC
Confidence 6542111 11 36777 6666899999986 56666666666665544 444
Q ss_pred CccC-CHHHHHHHHhcCCCCCCCchHHHHHHHHHHH
Q 002012 893 DLHY-TKEAVTLLGILGFDPNFGARPVKRVIQQLVE 927 (982)
Q Consensus 893 ~l~i-~~~a~~~L~~~~~~~~~gaR~L~~~i~~~l~ 927 (982)
.+.. +++++..|..+.|++|. |+|++.|+..+.
T Consensus 274 ~~~~~~~~a~~~L~~y~~pGNi--rELkN~Ve~~~~ 307 (403)
T COG1221 274 PLSVDSPEALRALLAYDWPGNI--RELKNLVERAVA 307 (403)
T ss_pred CCCCCCHHHHHHHHhCCCCCcH--HHHHHHHHHHHH
Confidence 4433 36999999999999877 799999999443
No 54
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.80 E-value=1.1e-18 Score=204.97 Aligned_cols=228 Identities=18% Similarity=0.311 Sum_probs=179.0
Q ss_pred hcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccccccc
Q 002012 662 HKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRL 741 (982)
Q Consensus 662 ~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l 741 (982)
+..++|++.++..+.+.+++... ...++||.|++||||+.+|+.|+......+.||+.+||+.+.+..-.+.+
T Consensus 211 f~~iiG~S~~m~~~~~~i~~~A~-------~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~lleseL 283 (526)
T TIGR02329 211 LDDLLGASAPMEQVRALVRLYAR-------SDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESLLEAEL 283 (526)
T ss_pred hhheeeCCHHHHHHHHHHHHHhC-------CCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhHHHHHh
Confidence 35799999999999999876522 12249999999999999999999987667889999999998765445678
Q ss_pred cCCCCC-ccccccCCchhHHHhhCCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCChHHH
Q 002012 742 VGAPPG-YVGYEEGGQLTEVVRRRPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYI 820 (982)
Q Consensus 742 ~g~~~g-~vg~~~~~~l~~~l~~~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~i 820 (982)
+|...| +.|...++ -.+.+..+.+++||||||+.+++..|..|+.+|+++.+....+......++.+|++||......
T Consensus 284 FG~~~gaftga~~~~-~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~r~g~~~~~~~dvRiIaat~~~l~~~ 362 (526)
T TIGR02329 284 FGYEEGAFTGARRGG-RTGLIEAAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHCALTTA 362 (526)
T ss_pred cCCcccccccccccc-cccchhhcCCceEEecChHhCCHHHHHHHHHHHhcCcEEecCCCceeeecceEEeccCCCHHHH
Confidence 887655 33332111 2345667788999999999999999999999999998876544444446789999999876543
Q ss_pred HHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhcccc-ccccCCCCh--hHHHHHHHHHHHHHHHHHHhCCCCccCC
Q 002012 821 LETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDE-YIVFQPLDS--KEISKIVEIQMNRVKDRLKQKKIDLHYT 897 (982)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~-ii~F~pl~~--~~l~~il~~~l~~~~~~~~~~~~~l~i~ 897 (982)
.. .+.|+++|++|++. .|..|||.+ +|+..++..++.++.... + +.++
T Consensus 363 v~------------------------~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~---~--~~~~ 413 (526)
T TIGR02329 363 VQ------------------------QGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAAL---R--LPDS 413 (526)
T ss_pred hh------------------------hcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHc---C--CCCC
Confidence 32 14588999999964 688999986 799999999999865432 2 4589
Q ss_pred HHHHHH-------HHhcCCCCCCCchHHHHHHHHHHHH
Q 002012 898 KEAVTL-------LGILGFDPNFGARPVKRVIQQLVEN 928 (982)
Q Consensus 898 ~~a~~~-------L~~~~~~~~~gaR~L~~~i~~~l~~ 928 (982)
+++++. |..+.|++|+ |+|++++++++..
T Consensus 414 ~~a~~~~~~~~~~L~~y~WPGNv--rEL~nvier~~i~ 449 (526)
T TIGR02329 414 EAAAQVLAGVADPLQRYPWPGNV--RELRNLVERLALE 449 (526)
T ss_pred HHHHHHhHHHHHHHHhCCCCchH--HHHHHHHHHHHHh
Confidence 999888 9999999877 9999999996543
No 55
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.80 E-value=2.4e-17 Score=200.48 Aligned_cols=201 Identities=18% Similarity=0.248 Sum_probs=137.3
Q ss_pred CcccchHHHHHHHHHhcc---------CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccc--
Q 002012 270 PVIGRDDEIRRCIQILSR---------RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVA-- 338 (982)
Q Consensus 270 ~liG~~~~i~~l~~~L~~---------~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~-- 338 (982)
.|+||++.++.+...+.+ ++..+++|+||||||||.+|+.+|+.+ +.+++.+||+.+..
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l----------~~~~i~id~se~~~~~ 528 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL----------GIELLRFDMSEYMERH 528 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh----------CCCcEEeechhhcccc
Confidence 489999999999988763 234578999999999999999999998 67888889877642
Q ss_pred --------cccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCC-------------
Q 002012 339 --------GTCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRG------------- 397 (982)
Q Consensus 339 --------~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g------------- 397 (982)
+..|.|.... ..+.+.....+.+|||||||+.+. .++++.|+++++.|
T Consensus 529 ~~~~LiG~~~gyvg~~~~---g~L~~~v~~~p~sVlllDEieka~--------~~v~~~LLq~ld~G~ltd~~g~~vd~r 597 (758)
T PRK11034 529 TVSRLIGAPPGYVGFDQG---GLLTDAVIKHPHAVLLLDEIEKAH--------PDVFNLLLQVMDNGTLTDNNGRKADFR 597 (758)
T ss_pred cHHHHcCCCCCccccccc---chHHHHHHhCCCcEEEeccHhhhh--------HHHHHHHHHHHhcCeeecCCCceecCC
Confidence 1224442111 223333333566899999999986 67999999999865
Q ss_pred CeEEEEecCchh--H-h-----------------hhhhcChHHHhccc-eEEecCCCHHHHHHHHHHHHHHHhh-----h
Q 002012 398 ELRCIGATTLNE--Y-R-----------------NYIEKDPALERRFQ-QVFCDQPSVENTISILRGLRERYEL-----H 451 (982)
Q Consensus 398 ~i~vI~at~~~~--~-~-----------------~~~~~d~al~rRf~-~i~i~~Ps~~e~~~IL~~~~~~~~~-----~ 451 (982)
++.+|+|||... . . -...+.|.|..|++ .|.|.+.+.+++..|++....++.. .
T Consensus 598 n~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~ 677 (758)
T PRK11034 598 NVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKG 677 (758)
T ss_pred CcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 345888888321 0 0 01135799999998 6777778999999998766654443 2
Q ss_pred cCCccChHHHHHHHHHhh-hhhccCCCcchhhHHHHHHHHH
Q 002012 452 HGVKISDSALVSAAVLAD-RYITERFLPDKAIDLVDEAAAK 491 (982)
Q Consensus 452 ~~v~i~~~~l~~~~~~s~-r~i~~~~~p~~a~~lld~a~~~ 491 (982)
..+.++++++++++.... .-...|.+.....+.+....+.
T Consensus 678 i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~l~~~la~ 718 (758)
T PRK11034 678 VSLEVSQEARDWLAEKGYDRAMGARPMARVIQDNLKKPLAN 718 (758)
T ss_pred CCceECHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHH
Confidence 346789999999887542 1123344433333344433333
No 56
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.79 E-value=1.3e-18 Score=202.04 Aligned_cols=204 Identities=22% Similarity=0.220 Sum_probs=160.0
Q ss_pred hhhHHHhhcCCCCCcccchHHHHHHHHHhccCCCCCc-EEeCCCCCcHHHHHHHHHHHhhcCCC-----C---CC-----
Q 002012 257 NDLTELARSGKLDPVIGRDDEIRRCIQILSRRTKNNP-VIIGEPGVGKTAIAEGLAQRIVRGDV-----P---ET----- 322 (982)
Q Consensus 257 ~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~i-LL~GppGvGKT~la~~la~~l~~~~~-----p---~~----- 322 (982)
..|.++|||.+|+++||+++.++.+.+.+......|. ||+||+||||||+|+.|++.+.+..- + ..
T Consensus 4 ~vLarKYRPqtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~s 83 (700)
T PRK12323 4 QVLARKWRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRA 83 (700)
T ss_pred hhHHHHhCCCcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHH
Confidence 3588999999999999999999999999988877776 88999999999999999999976210 0 00
Q ss_pred ------CCCCeEEEEecccccccccccccHHHHHHHHHHHHHh---cCCCeEEEEccchhhhhCCCCCchhhHHHHHHhh
Q 002012 323 ------LQNRKLISLDMASLVAGTCYRGDFEKRLKAVLKEVTK---SNGQIILFIDELHTIIGAGNQSGAMDASNMLKPM 393 (982)
Q Consensus 323 ------l~~~~v~~l~~~~l~~~~~~~g~~e~~l~~l~~~~~~---~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~ 393 (982)
.....++++|.++- . ..+.++++++.+.. .++..|+||||+|+|. ...+|.|+..
T Consensus 84 C~~I~aG~hpDviEIdAas~------~--gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls--------~~AaNALLKT 147 (700)
T PRK12323 84 CTEIDAGRFVDYIEMDAASN------R--GVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT--------NHAFNAMLKT 147 (700)
T ss_pred HHHHHcCCCCcceEeccccc------C--CHHHHHHHHHHHHhchhcCCceEEEEEChHhcC--------HHHHHHHHHh
Confidence 01124555554321 1 12334555555432 2456799999999996 5677888888
Q ss_pred hcC--CCeEEEEecCchhHhhhhhcChHHHhccceEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhh
Q 002012 394 LGR--GELRCIGATTLNEYRNYIEKDPALERRFQQVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRY 471 (982)
Q Consensus 394 le~--g~i~vI~at~~~~~~~~~~~d~al~rRf~~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~ 471 (982)
||. +++.||++||... .+.+.++|||+.+.|..++.+++.+.|+.++.. .++.++++++..++..+++.
T Consensus 148 LEEPP~~v~FILaTtep~-----kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~----Egi~~d~eAL~~IA~~A~Gs 218 (700)
T PRK12323 148 LEEPPEHVKFILATTDPQ-----KIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGE----EGIAHEVNALRLLAQAAQGS 218 (700)
T ss_pred hccCCCCceEEEEeCChH-----hhhhHHHHHHHhcccCCCChHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC
Confidence 885 7899999999887 688999999999999999999999999888775 57889999999999998754
Q ss_pred hccCCCcchhhHHHHHHHHH
Q 002012 472 ITERFLPDKAIDLVDEAAAK 491 (982)
Q Consensus 472 i~~~~~p~~a~~lld~a~~~ 491 (982)
+.+++.+++.+...
T Consensus 219 ------~RdALsLLdQaia~ 232 (700)
T PRK12323 219 ------MRDALSLTDQAIAY 232 (700)
T ss_pred ------HHHHHHHHHHHHHh
Confidence 58899999987764
No 57
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.79 E-value=2.8e-18 Score=203.53 Aligned_cols=230 Identities=20% Similarity=0.282 Sum_probs=178.1
Q ss_pred hhcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEecccccccccccc
Q 002012 661 LHKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSR 740 (982)
Q Consensus 661 l~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~ 740 (982)
-+..++|.+.+++.+...+++.... ..++||+|++||||+.+|++++........+|+.+||+.+.+....+.
T Consensus 202 ~f~~~ig~s~~~~~~~~~~~~~A~~-------~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~~~~e~e 274 (520)
T PRK10820 202 AFSQIVAVSPKMRQVVEQARKLAML-------DAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDVVESE 274 (520)
T ss_pred cccceeECCHHHHHHHHHHHHHhCC-------CCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCHHHHHHH
Confidence 3468999999999988888765221 113999999999999999999988876678999999999875444456
Q ss_pred ccCCCCC-ccccccCCchhHHHhhCCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCChHH
Q 002012 741 LVGAPPG-YVGYEEGGQLTEVVRRRPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHY 819 (982)
Q Consensus 741 l~g~~~g-~vg~~~~~~l~~~l~~~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~ 819 (982)
++|..+| +.|..++ -.+.+..+.+++||||||+.+++..|..|++++++|.+....+......+++||++|+.....
T Consensus 275 lFG~~~~~~~~~~~~--~~g~~e~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~l~~ 352 (520)
T PRK10820 275 LFGHAPGAYPNALEG--KKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVE 352 (520)
T ss_pred hcCCCCCCcCCcccC--CCChhhhcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCCHHH
Confidence 8887654 3332222 124566677889999999999999999999999999876654433334678999999987664
Q ss_pred HHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhcccc-ccccCCCCh--hHHHHHHHHHHHHHHHHHHhCCCCccC
Q 002012 820 ILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDE-YIVFQPLDS--KEISKIVEIQMNRVKDRLKQKKIDLHY 896 (982)
Q Consensus 820 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~-ii~F~pl~~--~~l~~il~~~l~~~~~~~~~~~~~l~i 896 (982)
+.+. +.|+++|++|+.. .|..|||.+ +|+..+++.++.++..+.... ...+
T Consensus 353 l~~~------------------------g~f~~dL~~rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~--~~~l 406 (520)
T PRK10820 353 LVQK------------------------GEFREDLYYRLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVP--RPKL 406 (520)
T ss_pred HHHc------------------------CCccHHHHhhcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCC--CCCc
Confidence 4432 4589999999864 688999986 689999999998876543221 3579
Q ss_pred CHHHHHHHHhcCCCCCCCchHHHHHHHHHHH
Q 002012 897 TKEAVTLLGILGFDPNFGARPVKRVIQQLVE 927 (982)
Q Consensus 897 ~~~a~~~L~~~~~~~~~gaR~L~~~i~~~l~ 927 (982)
++++++.|..+.|++|+ |+|++++++.+.
T Consensus 407 s~~a~~~L~~y~WPGNv--reL~nvl~~a~~ 435 (520)
T PRK10820 407 AADLNTVLTRYGWPGNV--RQLKNAIYRALT 435 (520)
T ss_pred CHHHHHHHhcCCCCCHH--HHHHHHHHHHHH
Confidence 99999999999999877 899999998554
No 58
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.79 E-value=8.4e-19 Score=178.96 Aligned_cols=182 Identities=19% Similarity=0.346 Sum_probs=122.3
Q ss_pred hhcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEecccccccccccc
Q 002012 661 LHKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSR 740 (982)
Q Consensus 661 l~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~ 740 (982)
-.++++||++.+..+.-.++.++.. ..++.|++|+||||+|||++|+.||+.+ +.+|..++.+.+..
T Consensus 22 ~L~efiGQ~~l~~~l~i~i~aa~~r----~~~l~h~lf~GPPG~GKTTLA~IIA~e~---~~~~~~~sg~~i~k------ 88 (233)
T PF05496_consen 22 SLDEFIGQEHLKGNLKILIRAAKKR----GEALDHMLFYGPPGLGKTTLARIIANEL---GVNFKITSGPAIEK------ 88 (233)
T ss_dssp SCCCS-S-HHHHHHHHHHHHHHHCT----TS---EEEEESSTTSSHHHHHHHHHHHC---T--EEEEECCC--S------
T ss_pred CHHHccCcHHHHhhhHHHHHHHHhc----CCCcceEEEECCCccchhHHHHHHHhcc---CCCeEeccchhhhh------
Confidence 3488999999999988777765432 3456689999999999999999999998 66666655543211
Q ss_pred ccCCCCCccccccCCchhHHHhh-CCCeEEEEccccccCHHHHHHHHHhhhcCceec--CCC---c--EEecccEEEEEe
Q 002012 741 LVGAPPGYVGYEEGGQLTEVVRR-RPYSVVLFDEIEKAHQDVFNILLQLLDDGRITD--SQG---R--TVSFTNCVVIMT 812 (982)
Q Consensus 741 l~g~~~g~vg~~~~~~l~~~l~~-~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d--~~g---~--~~~~~~~iiI~t 812 (982)
.+.+...+.. .++.|||||||+.+++.+|+.|+..||+|.+.- +.| + .++..+..+|.+
T Consensus 89 -------------~~dl~~il~~l~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligA 155 (233)
T PF05496_consen 89 -------------AGDLAAILTNLKEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGA 155 (233)
T ss_dssp -------------CHHHHHHHHT--TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEE
T ss_pred -------------HHHHHHHHHhcCCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeee
Confidence 1224444433 346799999999999999999999999998742 332 2 456678888888
Q ss_pred cCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHHHHHHHHHhCCC
Q 002012 813 SNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKI 892 (982)
Q Consensus 813 sn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~~~~~~~~~~ 892 (982)
|+... .++++|.+||..+..+..|+.+++.+|+...... .
T Consensus 156 TTr~g-------------------------------~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~---------l 195 (233)
T PF05496_consen 156 TTRAG-------------------------------LLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARI---------L 195 (233)
T ss_dssp ESSGC-------------------------------CTSHCCCTTSSEEEE----THHHHHHHHHHCCHC---------T
T ss_pred ecccc-------------------------------ccchhHHhhcceecchhcCCHHHHHHHHHHHHHH---------h
Confidence 77432 1688999999877789999999999999876553 4
Q ss_pred CccCCHHHHHHHHhcC
Q 002012 893 DLHYTKEAVTLLGILG 908 (982)
Q Consensus 893 ~l~i~~~a~~~L~~~~ 908 (982)
.+.+++++...++..+
T Consensus 196 ~i~i~~~~~~~Ia~rs 211 (233)
T PF05496_consen 196 NIEIDEDAAEEIARRS 211 (233)
T ss_dssp T-EE-HHHHHHHHHCT
T ss_pred CCCcCHHHHHHHHHhc
Confidence 4889999999999874
No 59
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.78 E-value=3.2e-18 Score=198.14 Aligned_cols=196 Identities=30% Similarity=0.410 Sum_probs=155.7
Q ss_pred hhHHHhhcCCCCCcccchHHHHH---HHHHhccCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecc
Q 002012 258 DLTELARSGKLDPVIGRDDEIRR---CIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMA 334 (982)
Q Consensus 258 ~l~~~~~~~~l~~liG~~~~i~~---l~~~L~~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~ 334 (982)
||.+++||.+|+++||+++.+.. +..++......+++|+||||||||++|+.+++.+ +..++.++..
T Consensus 1 pla~~~RP~~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~----------~~~~~~l~a~ 70 (413)
T PRK13342 1 PLAERMRPKTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT----------DAPFEALSAV 70 (413)
T ss_pred ChhhhhCCCCHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEecc
Confidence 58899999999999999998766 7777777778899999999999999999999987 6777777753
Q ss_pred cccccccccccHHHHHHHHHHHHHh---cCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCCCeEEEEecCchhHh
Q 002012 335 SLVAGTCYRGDFEKRLKAVLKEVTK---SNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRGELRCIGATTLNEYR 411 (982)
Q Consensus 335 ~l~~~~~~~g~~e~~l~~l~~~~~~---~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g~i~vI~at~~~~~~ 411 (982)
.. + ...++.+++.+.. .+.+.||||||+|.+. ...++.|++.++.+.+.+|++||.+.+
T Consensus 71 ~~--~-------~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~--------~~~q~~LL~~le~~~iilI~att~n~~- 132 (413)
T PRK13342 71 TS--G-------VKDLREVIEEARQRRSAGRRTILFIDEIHRFN--------KAQQDALLPHVEDGTITLIGATTENPS- 132 (413)
T ss_pred cc--c-------HHHHHHHHHHHHHhhhcCCceEEEEechhhhC--------HHHHHHHHHHhhcCcEEEEEeCCCChh-
Confidence 21 1 2234445554432 2356799999999986 456688999999999999999887653
Q ss_pred hhhhcChHHHhccceEEecCCCHHHHHHHHHHHHHHHhhhcCC-ccChHHHHHHHHHhhhhhccCCCcchhhHHHHHHHH
Q 002012 412 NYIEKDPALERRFQQVFCDQPSVENTISILRGLRERYELHHGV-KISDSALVSAAVLADRYITERFLPDKAIDLVDEAAA 490 (982)
Q Consensus 412 ~~~~~d~al~rRf~~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v-~i~~~~l~~~~~~s~r~i~~~~~p~~a~~lld~a~~ 490 (982)
+.+++++.+||..+.+..++.+++..+++..+...+. ++ .++++++..++.++.+. +..+.++++.+..
T Consensus 133 --~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~--~~i~i~~~al~~l~~~s~Gd------~R~aln~Le~~~~ 202 (413)
T PRK13342 133 --FEVNPALLSRAQVFELKPLSEEDIEQLLKRALEDKER--GLVELDDEALDALARLANGD------ARRALNLLELAAL 202 (413)
T ss_pred --hhccHHHhccceeeEeCCCCHHHHHHHHHHHHHHhhc--CCCCCCHHHHHHHHHhCCCC------HHHHHHHHHHHHH
Confidence 3689999999999999999999999999887766432 44 89999999999887543 4677777777664
Q ss_pred H
Q 002012 491 K 491 (982)
Q Consensus 491 ~ 491 (982)
.
T Consensus 203 ~ 203 (413)
T PRK13342 203 G 203 (413)
T ss_pred c
Confidence 3
No 60
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.78 E-value=3.9e-18 Score=185.49 Aligned_cols=216 Identities=20% Similarity=0.369 Sum_probs=151.9
Q ss_pred cccccchHHHHHHHHHHHH-------HhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcC----CCCceEEEeccc
Q 002012 663 KRVIGQDIAVKSVADAIRR-------SRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFN----TENALVRIDMSE 731 (982)
Q Consensus 663 ~~iiGq~~a~~~l~~~i~~-------~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~----~~~~~v~i~~s~ 731 (982)
..++|++.+++.|.+.+.. ...|...+.. ..+++|+||||||||++|+++|+.++. ...+++.+++++
T Consensus 6 ~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~-~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~ 84 (261)
T TIGR02881 6 SRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQ-VLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERAD 84 (261)
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC-cceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHH
Confidence 4589999999888765432 2345543333 346999999999999999999998743 223566666665
Q ss_pred cccccccccccCCCCCccccccCCchhHHHhhCCCeEEEEccccccC--------HHHHHHHHHhhhcCceecCCCcEEe
Q 002012 732 YMEKHSVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEIEKAH--------QDVFNILLQLLDDGRITDSQGRTVS 803 (982)
Q Consensus 732 ~~~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~~~~~Vl~lDEidkl~--------~~~~~~Ll~~le~g~~~d~~g~~~~ 803 (982)
+. |. |+|... ..+.+.+..+.++||||||+|.+. .+.++.|++.|+++.
T Consensus 85 l~---------~~---~~g~~~-~~~~~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~---------- 141 (261)
T TIGR02881 85 LV---------GE---YIGHTA-QKTREVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNR---------- 141 (261)
T ss_pred hh---------hh---hccchH-HHHHHHHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccC----------
Confidence 42 21 333222 235667777788999999999875 458899999998742
Q ss_pred cccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHHHH
Q 002012 804 FTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRV 883 (982)
Q Consensus 804 ~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~ 883 (982)
.++++|++++....... ..++|+|.+||+..|.|++++.+++.+|+...+..
T Consensus 142 -~~~~vila~~~~~~~~~--------------------------~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~- 193 (261)
T TIGR02881 142 -NEFVLILAGYSDEMDYF--------------------------LSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKE- 193 (261)
T ss_pred -CCEEEEecCCcchhHHH--------------------------HhcChHHHhccceEEEECCCCHHHHHHHHHHHHHH-
Confidence 34677777654221000 12678999999888999999999999999988764
Q ss_pred HHHHHhCCCCccCCHHHHHHHHhc----CC--CCCC-CchHHHHHHHHHHHHHHHHHHHcCC
Q 002012 884 KDRLKQKKIDLHYTKEAVTLLGIL----GF--DPNF-GARPVKRVIQQLVENEIAVAILKGD 938 (982)
Q Consensus 884 ~~~~~~~~~~l~i~~~a~~~L~~~----~~--~~~~-gaR~L~~~i~~~l~~~la~~~l~~~ 938 (982)
. .+.++++++++|.+. .+ .+.+ ++|.++++++..+.+...+.+-.+.
T Consensus 194 ------~--~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e~a~~~~~~r~~~~~~ 247 (261)
T TIGR02881 194 ------R--EYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNIIEKAIRRQAVRLLDKSD 247 (261)
T ss_pred ------c--CCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhccCC
Confidence 2 367999999888653 11 2334 4899999999988888665554443
No 61
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.78 E-value=4.7e-18 Score=184.86 Aligned_cols=212 Identities=22% Similarity=0.292 Sum_probs=155.4
Q ss_pred CCCcccchHHHHHHHHHhc---------------cCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEe
Q 002012 268 LDPVIGRDDEIRRCIQILS---------------RRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLD 332 (982)
Q Consensus 268 l~~liG~~~~i~~l~~~L~---------------~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~ 332 (982)
+++++|.++..+++.++.. .....|++|+||||||||++|+.+|+.+..... +....++.++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~---~~~~~~v~~~ 81 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNV---LSKGHLIEVE 81 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCc---ccCCceEEec
Confidence 5678898886655543321 124468899999999999999999998754322 2355788888
Q ss_pred cccccccccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhc--CCCeEEEEecCchhH
Q 002012 333 MASLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLG--RGELRCIGATTLNEY 410 (982)
Q Consensus 333 ~~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le--~g~i~vI~at~~~~~ 410 (982)
++++.+ .|.|+....+.++|+.+. +.||||||+|.|...+......++.+.|++.++ ++.+.+|+++++.+.
T Consensus 82 ~~~l~~--~~~g~~~~~~~~~~~~a~----~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~ 155 (261)
T TIGR02881 82 RADLVG--EYIGHTAQKTREVIKKAL----GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEM 155 (261)
T ss_pred HHHhhh--hhccchHHHHHHHHHhcc----CCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchh
Confidence 888874 478888888888886653 349999999999743333333567788888887 457788888888777
Q ss_pred hhhhhcChHHHhccc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhc----cCCCcchhhHHH
Q 002012 411 RNYIEKDPALERRFQ-QVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYIT----ERFLPDKAIDLV 485 (982)
Q Consensus 411 ~~~~~~d~al~rRf~-~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~----~~~~p~~a~~ll 485 (982)
..+..++|+|++||. .+.++.++.+++.+|++.++.. .+..++++++..++....++.. .....+.+.+++
T Consensus 156 ~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~----~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~ 231 (261)
T TIGR02881 156 DYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKE----REYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNII 231 (261)
T ss_pred HHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHH----cCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHH
Confidence 677789999999995 7999999999999999988876 5778999999988777654321 112334556666
Q ss_pred HHHHHHh
Q 002012 486 DEAAAKL 492 (982)
Q Consensus 486 d~a~~~~ 492 (982)
+.|..+.
T Consensus 232 e~a~~~~ 238 (261)
T TIGR02881 232 EKAIRRQ 238 (261)
T ss_pred HHHHHHH
Confidence 6666443
No 62
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=2.9e-18 Score=196.75 Aligned_cols=202 Identities=24% Similarity=0.401 Sum_probs=153.2
Q ss_pred hhcCCCCCcccchHHHHHHHHHhcc------------CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEE
Q 002012 263 ARSGKLDPVIGRDDEIRRCIQILSR------------RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLIS 330 (982)
Q Consensus 263 ~~~~~l~~liG~~~~i~~l~~~L~~------------~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~ 330 (982)
.+.-+.+|+=|-++....+++.+.= +.+.++|||||||||||.+|+++|-++ ...+++
T Consensus 666 IPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEc----------sL~FlS 735 (953)
T KOG0736|consen 666 IPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATEC----------SLNFLS 735 (953)
T ss_pred CCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhc----------eeeEEe
Confidence 3445778888888766666664421 346789999999999999999999988 788888
Q ss_pred EecccccccccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCC----Cchhh-HHHHHHhhhc------CCCe
Q 002012 331 LDMASLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQ----SGAMD-ASNMLKPMLG------RGEL 399 (982)
Q Consensus 331 l~~~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~----~~~~~-~~~~L~~~le------~g~i 399 (982)
+.-.++. .+|.|+.|++++++|+.++. ..|||||+||+|.+.+.+.. +|.+| +...|+..|+ ...+
T Consensus 736 VKGPELL--NMYVGqSE~NVR~VFerAR~-A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~V 812 (953)
T KOG0736|consen 736 VKGPELL--NMYVGQSEENVREVFERARS-AAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDV 812 (953)
T ss_pred ecCHHHH--HHHhcchHHHHHHHHHHhhc-cCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCce
Confidence 8877777 67999999999999999997 57999999999999987543 33333 4444444443 3479
Q ss_pred EEEEecCchhHhhhhhcChHHHh--ccc-eEEecCC-CHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccC
Q 002012 400 RCIGATTLNEYRNYIEKDPALER--RFQ-QVFCDQP-SVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITER 475 (982)
Q Consensus 400 ~vI~at~~~~~~~~~~~d~al~r--Rf~-~i~i~~P-s~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~ 475 (982)
.||||||+++ .+||+|.| ||+ .+++..+ +.+....||+++..+|....+|. +..+++.+. ..
T Consensus 813 FViGATNRPD-----LLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVd-----L~eiAk~cp----~~ 878 (953)
T KOG0736|consen 813 FVIGATNRPD-----LLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVD-----LVEIAKKCP----PN 878 (953)
T ss_pred EEEecCCCcc-----ccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcC-----HHHHHhhCC----cC
Confidence 9999999999 79999999 998 7788887 57778899999999875544443 344444443 33
Q ss_pred CCcchhhHHHHHHHHH
Q 002012 476 FLPDKAIDLVDEAAAK 491 (982)
Q Consensus 476 ~~p~~a~~lld~a~~~ 491 (982)
+..++...|+..|.-.
T Consensus 879 ~TGADlYsLCSdA~l~ 894 (953)
T KOG0736|consen 879 MTGADLYSLCSDAMLA 894 (953)
T ss_pred CchhHHHHHHHHHHHH
Confidence 4556777777666543
No 63
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.78 E-value=2.2e-17 Score=192.36 Aligned_cols=204 Identities=23% Similarity=0.224 Sum_probs=159.7
Q ss_pred hhhHHHhhcCCCCCcccchHHHHHHHHHhccCCCCCc-EEeCCCCCcHHHHHHHHHHHhhcCCCCC--------------
Q 002012 257 NDLTELARSGKLDPVIGRDDEIRRCIQILSRRTKNNP-VIIGEPGVGKTAIAEGLAQRIVRGDVPE-------------- 321 (982)
Q Consensus 257 ~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~i-LL~GppGvGKT~la~~la~~l~~~~~p~-------------- 321 (982)
..|.+++||.+|+++||+++.++.+.+.+.+....|. ||+||+|||||++|+.+|+.+.+...+.
T Consensus 3 ~~LarKyRPktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~ 82 (702)
T PRK14960 3 QVLARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVN 82 (702)
T ss_pred hhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHh
Confidence 3588999999999999999999999999887765565 8999999999999999999986532111
Q ss_pred CCCCCeEEEEecccccccccccccHHHHHHHHHHHHHh---cCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcC--
Q 002012 322 TLQNRKLISLDMASLVAGTCYRGDFEKRLKAVLKEVTK---SNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGR-- 396 (982)
Q Consensus 322 ~l~~~~v~~l~~~~l~~~~~~~g~~e~~l~~l~~~~~~---~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~-- 396 (982)
......++.+|.++- .+ .+.+++++..+.. .+++.|+||||+|+|. ....+.|+..++.
T Consensus 83 ~g~hpDviEIDAAs~------~~--VddIReli~~~~y~P~~gk~KV~IIDEVh~LS--------~~A~NALLKtLEEPP 146 (702)
T PRK14960 83 EGRFIDLIEIDAASR------TK--VEDTRELLDNVPYAPTQGRFKVYLIDEVHMLS--------THSFNALLKTLEEPP 146 (702)
T ss_pred cCCCCceEEeccccc------CC--HHHHHHHHHHHhhhhhcCCcEEEEEechHhcC--------HHHHHHHHHHHhcCC
Confidence 011224566654321 11 2335556555432 2445699999999996 4567889999986
Q ss_pred CCeEEEEecCchhHhhhhhcChHHHhccceEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCC
Q 002012 397 GELRCIGATTLNEYRNYIEKDPALERRFQQVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERF 476 (982)
Q Consensus 397 g~i~vI~at~~~~~~~~~~~d~al~rRf~~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~ 476 (982)
+.+.+|++|+... .+.+.+++||..+.|..++.+++...|+.++.+ .++.++++++..++..+++-
T Consensus 147 ~~v~FILaTtd~~-----kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~k----EgI~id~eAL~~IA~~S~Gd----- 212 (702)
T PRK14960 147 EHVKFLFATTDPQ-----KLPITVISRCLQFTLRPLAVDEITKHLGAILEK----EQIAADQDAIWQIAESAQGS----- 212 (702)
T ss_pred CCcEEEEEECChH-----hhhHHHHHhhheeeccCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC-----
Confidence 7789999998766 567899999999999999999999999988877 68999999999999998754
Q ss_pred CcchhhHHHHHHHHH
Q 002012 477 LPDKAIDLVDEAAAK 491 (982)
Q Consensus 477 ~p~~a~~lld~a~~~ 491 (982)
.++++.++|.++++
T Consensus 213 -LRdALnLLDQaIay 226 (702)
T PRK14960 213 -LRDALSLTDQAIAY 226 (702)
T ss_pred -HHHHHHHHHHHHHh
Confidence 48899999988865
No 64
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.78 E-value=1.1e-17 Score=194.35 Aligned_cols=202 Identities=19% Similarity=0.252 Sum_probs=153.5
Q ss_pred CCCCCcccchHHHHHHHHH---hc-------cCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEeccc
Q 002012 266 GKLDPVIGRDDEIRRCIQI---LS-------RRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMAS 335 (982)
Q Consensus 266 ~~l~~liG~~~~i~~l~~~---L~-------~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~ 335 (982)
.+++++.|.+...+.+.+. +. -..++++||+||||||||.+|+++|..+ +.+++.++++.
T Consensus 225 ~~~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~----------~~~~~~l~~~~ 294 (489)
T CHL00195 225 EKISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW----------QLPLLRLDVGK 294 (489)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh----------CCCEEEEEhHH
Confidence 4677888876644433321 11 1356789999999999999999999998 89999999998
Q ss_pred ccccccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCC----chhhHHHHHHhhhc--CCCeEEEEecCchh
Q 002012 336 LVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQS----GAMDASNMLKPMLG--RGELRCIGATTLNE 409 (982)
Q Consensus 336 l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~----~~~~~~~~L~~~le--~g~i~vI~at~~~~ 409 (982)
+.++ |.|+.+.+++.+|..+.. ..|+||||||||.++...... ....+.+.++..++ ...+.+|+|||..+
T Consensus 295 l~~~--~vGese~~l~~~f~~A~~-~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~ 371 (489)
T CHL00195 295 LFGG--IVGESESRMRQMIRIAEA-LSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNID 371 (489)
T ss_pred hccc--ccChHHHHHHHHHHHHHh-cCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChh
Confidence 8854 899999999999998876 578999999999987643222 12334444555554 45789999999988
Q ss_pred HhhhhhcChHHHh--ccc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCCcchhhHHHH
Q 002012 410 YRNYIEKDPALER--RFQ-QVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLPDKAIDLVD 486 (982)
Q Consensus 410 ~~~~~~~d~al~r--Rf~-~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~p~~a~~lld 486 (982)
.+||++.| ||+ .++|+.|+.+++.+||+.+..++.. ....+..+..++..+. +|.+.+...++.
T Consensus 372 -----~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~---~~~~~~dl~~La~~T~-----GfSGAdI~~lv~ 438 (489)
T CHL00195 372 -----LLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRP---KSWKKYDIKKLSKLSN-----KFSGAEIEQSII 438 (489)
T ss_pred -----hCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCC---CcccccCHHHHHhhcC-----CCCHHHHHHHHH
Confidence 79999998 997 8899999999999999988887421 1123445677777754 456788888888
Q ss_pred HHHHHhh
Q 002012 487 EAAAKLK 493 (982)
Q Consensus 487 ~a~~~~~ 493 (982)
+|...+.
T Consensus 439 eA~~~A~ 445 (489)
T CHL00195 439 EAMYIAF 445 (489)
T ss_pred HHHHHHH
Confidence 8876554
No 65
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.77 E-value=3.4e-17 Score=194.12 Aligned_cols=204 Identities=23% Similarity=0.210 Sum_probs=160.4
Q ss_pred hhhHHHhhcCCCCCcccchHHHHHHHHHhccCCCCCc-EEeCCCCCcHHHHHHHHHHHhhcCCCCC---C----------
Q 002012 257 NDLTELARSGKLDPVIGRDDEIRRCIQILSRRTKNNP-VIIGEPGVGKTAIAEGLAQRIVRGDVPE---T---------- 322 (982)
Q Consensus 257 ~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~i-LL~GppGvGKT~la~~la~~l~~~~~p~---~---------- 322 (982)
..|.++|||.+|+++||+++.++.+.+.+..+...|. ||+||+||||||+|+.+|+.+.+..... .
T Consensus 4 ~~La~KyRP~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~ 83 (647)
T PRK07994 4 QVLARKWRPQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIE 83 (647)
T ss_pred hhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHH
Confidence 4589999999999999999999999999988777775 8999999999999999999997642110 0
Q ss_pred -CCCCeEEEEecccccccccccccHHHHHHHHHHHHHh---cCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcC--
Q 002012 323 -LQNRKLISLDMASLVAGTCYRGDFEKRLKAVLKEVTK---SNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGR-- 396 (982)
Q Consensus 323 -l~~~~v~~l~~~~l~~~~~~~g~~e~~l~~l~~~~~~---~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~-- 396 (982)
.....++.+|.++ .. ..+.++++++.+.. .++..|+||||+|+|. ...+|.|+..||.
T Consensus 84 ~g~~~D~ieidaas------~~--~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls--------~~a~NALLKtLEEPp 147 (647)
T PRK07994 84 QGRFVDLIEIDAAS------RT--KVEDTRELLDNVQYAPARGRFKVYLIDEVHMLS--------RHSFNALLKTLEEPP 147 (647)
T ss_pred cCCCCCceeecccc------cC--CHHHHHHHHHHHHhhhhcCCCEEEEEechHhCC--------HHHHHHHHHHHHcCC
Confidence 0011344444321 11 12234555555442 2456799999999996 5678889889985
Q ss_pred CCeEEEEecCchhHhhhhhcChHHHhccceEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCC
Q 002012 397 GELRCIGATTLNEYRNYIEKDPALERRFQQVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERF 476 (982)
Q Consensus 397 g~i~vI~at~~~~~~~~~~~d~al~rRf~~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~ 476 (982)
+.+.||++||... .+.+.+++||..+.|..++.+++...|+.++.. .++.++++++..++.+|++.
T Consensus 148 ~~v~FIL~Tt~~~-----kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~----e~i~~e~~aL~~Ia~~s~Gs----- 213 (647)
T PRK07994 148 EHVKFLLATTDPQ-----KLPVTILSRCLQFHLKALDVEQIRQQLEHILQA----EQIPFEPRALQLLARAADGS----- 213 (647)
T ss_pred CCeEEEEecCCcc-----ccchHHHhhheEeeCCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC-----
Confidence 7899999998877 788999999999999999999999999888766 47889999999999998754
Q ss_pred CcchhhHHHHHHHHH
Q 002012 477 LPDKAIDLVDEAAAK 491 (982)
Q Consensus 477 ~p~~a~~lld~a~~~ 491 (982)
+++++.++|.+.+.
T Consensus 214 -~R~Al~lldqaia~ 227 (647)
T PRK07994 214 -MRDALSLTDQAIAS 227 (647)
T ss_pred -HHHHHHHHHHHHHh
Confidence 48999999988764
No 66
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.77 E-value=5.7e-18 Score=202.62 Aligned_cols=204 Identities=20% Similarity=0.204 Sum_probs=159.1
Q ss_pred hhhHHHhhcCCCCCcccchHHHHHHHHHhccCCCCCc-EEeCCCCCcHHHHHHHHHHHhhcCCCCC---C----------
Q 002012 257 NDLTELARSGKLDPVIGRDDEIRRCIQILSRRTKNNP-VIIGEPGVGKTAIAEGLAQRIVRGDVPE---T---------- 322 (982)
Q Consensus 257 ~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~i-LL~GppGvGKT~la~~la~~l~~~~~p~---~---------- 322 (982)
..|.++|||.+|+++||+++.++.+.+++..+...|. ||+||||||||++|+.+|+.+.+..... .
T Consensus 4 ~~LaeKyRP~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~ 83 (944)
T PRK14949 4 QVLARKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIA 83 (944)
T ss_pred hhHHHHhCCCCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHh
Confidence 4689999999999999999999999999888777886 8999999999999999999996642110 0
Q ss_pred -CCCCeEEEEecccccccccccccHHHHHHHHHHHHHh---cCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcC--
Q 002012 323 -LQNRKLISLDMASLVAGTCYRGDFEKRLKAVLKEVTK---SNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGR-- 396 (982)
Q Consensus 323 -l~~~~v~~l~~~~l~~~~~~~g~~e~~l~~l~~~~~~---~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~-- 396 (982)
.....+++++.++ ..| ...++.+++.+.. .++..|+||||+|+|. .+++|.|+..||.
T Consensus 84 ~g~~~DviEidAas------~~k--VDdIReLie~v~~~P~~gk~KViIIDEAh~LT--------~eAqNALLKtLEEPP 147 (944)
T PRK14949 84 QGRFVDLIEVDAAS------RTK--VDDTRELLDNVQYRPSRGRFKVYLIDEVHMLS--------RSSFNALLKTLEEPP 147 (944)
T ss_pred cCCCceEEEecccc------ccC--HHHHHHHHHHHHhhhhcCCcEEEEEechHhcC--------HHHHHHHHHHHhccC
Confidence 0011233333221 111 2234455544432 2445799999999996 6788999999985
Q ss_pred CCeEEEEecCchhHhhhhhcChHHHhccceEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCC
Q 002012 397 GELRCIGATTLNEYRNYIEKDPALERRFQQVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERF 476 (982)
Q Consensus 397 g~i~vI~at~~~~~~~~~~~d~al~rRf~~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~ 476 (982)
+.+++|++||... .+.+.+++||..+.|..++.+++...|+.++.. .++.++++++..++.++++.
T Consensus 148 ~~vrFILaTTe~~-----kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~----EgI~~edeAL~lIA~~S~Gd----- 213 (944)
T PRK14949 148 EHVKFLLATTDPQ-----KLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQ----EQLPFEAEALTLLAKAANGS----- 213 (944)
T ss_pred CCeEEEEECCCch-----hchHHHHHhheEEeCCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC-----
Confidence 7899999998877 578999999999999999999999999887776 47899999999999998754
Q ss_pred CcchhhHHHHHHHHH
Q 002012 477 LPDKAIDLVDEAAAK 491 (982)
Q Consensus 477 ~p~~a~~lld~a~~~ 491 (982)
+++++.+++.+.+.
T Consensus 214 -~R~ALnLLdQala~ 227 (944)
T PRK14949 214 -MRDALSLTDQAIAF 227 (944)
T ss_pred -HHHHHHHHHHHHHh
Confidence 48999999988753
No 67
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.77 E-value=9.5e-18 Score=205.32 Aligned_cols=225 Identities=17% Similarity=0.265 Sum_probs=176.3
Q ss_pred hcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccccccc
Q 002012 662 HKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRL 741 (982)
Q Consensus 662 ~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l 741 (982)
+..++|.+.+++.+.+.++.... ...++||.|++||||+.+|++|++.....+.+|+.+||+.+....-.+.+
T Consensus 324 ~~~l~g~s~~~~~~~~~~~~~a~-------~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~~~~~el 396 (638)
T PRK11388 324 FDHMPQDSPQMRRLIHFGRQAAK-------SSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEALAEEF 396 (638)
T ss_pred ccceEECCHHHHHHHHHHHHHhC-------cCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChHHHHHHh
Confidence 56799999999998888876532 12249999999999999999999988766789999999998654434568
Q ss_pred cCCCCCccccccCCchhHHHhhCCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCChHHHH
Q 002012 742 VGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYIL 821 (982)
Q Consensus 742 ~g~~~g~vg~~~~~~l~~~l~~~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~i~ 821 (982)
+|...+. ...+ ..+.+..+.+++||||||+.+++..|..|+++|+++.++...+......++.||+||+.+...+.
T Consensus 397 fg~~~~~---~~~~-~~g~~~~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~~l~~~~ 472 (638)
T PRK11388 397 LGSDRTD---SENG-RLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTADLAMLV 472 (638)
T ss_pred cCCCCcC---ccCC-CCCceeECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccCCHHHHH
Confidence 8864321 1111 22345667789999999999999999999999999988765544333356899999998765443
Q ss_pred HhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhcccc-ccccCCCCh--hHHHHHHHHHHHHHHHHHHhCCCCccCCH
Q 002012 822 ETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDE-YIVFQPLDS--KEISKIVEIQMNRVKDRLKQKKIDLHYTK 898 (982)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~-ii~F~pl~~--~~l~~il~~~l~~~~~~~~~~~~~l~i~~ 898 (982)
.. +.|+++|++|+.. .|..|||.+ +|+..+++.++.++..++ +..+.+++
T Consensus 473 ~~------------------------~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~---~~~~~~s~ 525 (638)
T PRK11388 473 EQ------------------------NRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRF---STRLKIDD 525 (638)
T ss_pred hc------------------------CCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHh---CCCCCcCH
Confidence 31 4589999999965 688999986 699999999999876543 33367999
Q ss_pred HHHHHHHhcCCCCCCCchHHHHHHHHHH
Q 002012 899 EAVTLLGILGFDPNFGARPVKRVIQQLV 926 (982)
Q Consensus 899 ~a~~~L~~~~~~~~~gaR~L~~~i~~~l 926 (982)
++++.|..+.|++|+ |+|+++++..+
T Consensus 526 ~a~~~L~~y~WPGNv--reL~~~l~~~~ 551 (638)
T PRK11388 526 DALARLVSYRWPGND--FELRSVIENLA 551 (638)
T ss_pred HHHHHHHcCCCCChH--HHHHHHHHHHH
Confidence 999999999999877 99999999844
No 68
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.76 E-value=2.1e-17 Score=189.21 Aligned_cols=200 Identities=25% Similarity=0.359 Sum_probs=153.7
Q ss_pred CCCCCcccchHHHHHHHHHhcc-------------CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEe
Q 002012 266 GKLDPVIGRDDEIRRCIQILSR-------------RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLD 332 (982)
Q Consensus 266 ~~l~~liG~~~~i~~l~~~L~~-------------~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~ 332 (982)
-.++++.|.++.++.+.+.+.. ..+.++||+||||||||++|+++|..+ +.+++.++
T Consensus 128 ~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~----------~~~~i~v~ 197 (389)
T PRK03992 128 VTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET----------NATFIRVV 197 (389)
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh----------CCCEEEee
Confidence 3567899999988888775421 356789999999999999999999988 77899999
Q ss_pred cccccccccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCC---CchhhHHHHHHhhh---c----CCCeEEE
Q 002012 333 MASLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQ---SGAMDASNMLKPML---G----RGELRCI 402 (982)
Q Consensus 333 ~~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~---~~~~~~~~~L~~~l---e----~g~i~vI 402 (982)
++.+. .+|.|+.+..++.+|..+.. ..++||||||+|.+...+.. .+..++...+.+++ + .+++.||
T Consensus 198 ~~~l~--~~~~g~~~~~i~~~f~~a~~-~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI 274 (389)
T PRK03992 198 GSELV--QKFIGEGARLVRELFELARE-KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKII 274 (389)
T ss_pred hHHHh--HhhccchHHHHHHHHHHHHh-cCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEE
Confidence 88887 34788888899999988775 56789999999999865432 22344445555544 2 3689999
Q ss_pred EecCchhHhhhhhcChHHHh--ccc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCCcc
Q 002012 403 GATTLNEYRNYIEKDPALER--RFQ-QVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLPD 479 (982)
Q Consensus 403 ~at~~~~~~~~~~~d~al~r--Rf~-~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~p~ 479 (982)
+|||..+ .+|+++.| ||+ .|+|+.|+.+++.+||+.+...+.... +..+..++..+ ..+.+.
T Consensus 275 ~aTn~~~-----~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~-----~~~~~~la~~t-----~g~sga 339 (389)
T PRK03992 275 AATNRID-----ILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLAD-----DVDLEELAELT-----EGASGA 339 (389)
T ss_pred EecCChh-----hCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCC-----cCCHHHHHHHc-----CCCCHH
Confidence 9999987 68999998 997 899999999999999987766532111 12245556663 456778
Q ss_pred hhhHHHHHHHHHhh
Q 002012 480 KAIDLVDEAAAKLK 493 (982)
Q Consensus 480 ~a~~lld~a~~~~~ 493 (982)
+...++.+|+..+-
T Consensus 340 dl~~l~~eA~~~a~ 353 (389)
T PRK03992 340 DLKAICTEAGMFAI 353 (389)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887654
No 69
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=99.76 E-value=8.4e-18 Score=175.13 Aligned_cols=251 Identities=22% Similarity=0.362 Sum_probs=174.1
Q ss_pred HHHHHHHHhhhcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccc
Q 002012 652 EKLVMLEEVLHKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSE 731 (982)
Q Consensus 652 ~~l~~l~~~l~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~ 731 (982)
.++..|+..|...++||.-+++.|..+++..... +.|++|+. +-|+|+|||||+.+++.||+.+|..+.. |.
T Consensus 71 ~~~~~Le~dL~~~lfGQHla~~~Vv~alk~~~~n-~~p~KPLv-LSfHG~tGTGKN~Va~iiA~n~~~~Gl~------S~ 142 (344)
T KOG2170|consen 71 NDLDGLEKDLARALFGQHLAKQLVVNALKSHWAN-PNPRKPLV-LSFHGWTGTGKNYVAEIIAENLYRGGLR------SP 142 (344)
T ss_pred ccchHHHHHHHHHhhchHHHHHHHHHHHHHHhcC-CCCCCCeE-EEecCCCCCchhHHHHHHHHHHHhcccc------ch
Confidence 3477899999999999999999999999876554 34889996 9999999999999999999999765432 22
Q ss_pred cccccccccccCCCCCccc-cc--cCCchhHHHhhCCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEE
Q 002012 732 YMEKHSVSRLVGAPPGYVG-YE--EGGQLTEVVRRRPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCV 808 (982)
Q Consensus 732 ~~~~~~~~~l~g~~~g~vg-~~--~~~~l~~~l~~~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~i 808 (982)
+.... +..+-...+.++. |. -.+.+.+.+..++.++++|||+|||+++.++.|-..||-... ...++|.++|
T Consensus 143 ~V~~f-vat~hFP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~gLld~lkpfLdyyp~----v~gv~frkaI 217 (344)
T KOG2170|consen 143 FVHHF-VATLHFPHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPPGLLDVLKPFLDYYPQ----VSGVDFRKAI 217 (344)
T ss_pred hHHHh-hhhccCCChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcCHhHHHHHhhhhccccc----cccccccceE
Confidence 21100 0000011111211 11 123566777889999999999999999999999999995332 3347899999
Q ss_pred EEEecCCChHHHHHh----hhhcccchHHHHHHHHHHHHHHHH----hhc-ChHHH--hccccccccCCCChhHHHHHHH
Q 002012 809 VIMTSNIGSHYILET----LQSVQDSKEAVYEVMKKQVVELAR----QTF-RPEFL--NRIDEYIVFQPLDSKEISKIVE 877 (982)
Q Consensus 809 iI~tsn~~~~~i~~~----~~~~~~~~~~~~~~~~~~~~~~~~----~~f-~p~ll--~Rid~ii~F~pl~~~~l~~il~ 877 (982)
||+-||.+..+|.+. ...+....+...+.++..++.... ..+ ...++ ++||.+|||.|+++.++..+++
T Consensus 218 FIfLSN~gg~eI~~~aL~~~~~g~~re~~~l~~~E~~L~~~~~n~~~~Gl~~S~li~~~lid~fIPFLPLek~hV~~C~r 297 (344)
T KOG2170|consen 218 FIFLSNAGGSEIARIALENARNGKPREQLRLKSFEPALMQSAFNEKAGGLVHSRLISNNLIDHFIPFLPLEKRHVRSCIR 297 (344)
T ss_pred EEEEcCCcchHHHHHHHHHHHcCCCcccchhhhhhHHHHHhhhccccccccccccchhhHHhhccCcCcccHHHHHHHHH
Confidence 999999998777642 222333333334444444433221 122 11222 7889999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCccCCHHHHHHHHhc-CCCC----CCCchHHHHHHHH
Q 002012 878 IQMNRVKDRLKQKKIDLHYTKEAVTLLGIL-GFDP----NFGARPVKRVIQQ 924 (982)
Q Consensus 878 ~~l~~~~~~~~~~~~~l~i~~~a~~~L~~~-~~~~----~~gaR~L~~~i~~ 924 (982)
..+.+ +| +..+.+.++.+++. .|.| .|...++|++..+
T Consensus 298 ~el~~-------rg--~~~d~~~~erva~~l~ffp~~~k~Fs~sGCK~V~ak 340 (344)
T KOG2170|consen 298 AELRK-------RG--LAPDQDFVERVANSLSFFPESSKLFSSSGCKRVDAK 340 (344)
T ss_pred HHHHh-------cc--cccchHHHHHHHHhhcccccccceeecccchhhhhh
Confidence 99876 55 77788888777764 3333 3566778777654
No 70
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=3.7e-18 Score=176.18 Aligned_cols=185 Identities=22% Similarity=0.366 Sum_probs=147.8
Q ss_pred cCCCCCcccchHHHHHHHHHh------------ccCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEe
Q 002012 265 SGKLDPVIGRDDEIRRCIQIL------------SRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLD 332 (982)
Q Consensus 265 ~~~l~~liG~~~~i~~l~~~L------------~~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~ 332 (982)
.-+.++|-|.+...+.+.+++ .|.+++.+||+|||||||+.||+++|-+. +..++++.
T Consensus 129 NVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA----------nSTFFSvS 198 (439)
T KOG0739|consen 129 NVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA----------NSTFFSVS 198 (439)
T ss_pred CCchhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc----------CCceEEee
Confidence 347788999988887777743 34678899999999999999999999887 88999999
Q ss_pred cccccccccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHH-----HHHhhh----cCCCeEEEE
Q 002012 333 MASLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASN-----MLKPML----GRGELRCIG 403 (982)
Q Consensus 333 ~~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~-----~L~~~l----e~g~i~vI~ 403 (982)
-++|+ +++.|+.++..+.+|+.++. +.|.||||||||.+.+.+.... .++.. +|.++- +...+.|+|
T Consensus 199 SSDLv--SKWmGESEkLVknLFemARe-~kPSIIFiDEiDslcg~r~enE-seasRRIKTEfLVQMqGVG~d~~gvLVLg 274 (439)
T KOG0739|consen 199 SSDLV--SKWMGESEKLVKNLFEMARE-NKPSIIFIDEIDSLCGSRSENE-SEASRRIKTEFLVQMQGVGNDNDGVLVLG 274 (439)
T ss_pred hHHHH--HHHhccHHHHHHHHHHHHHh-cCCcEEEeehhhhhccCCCCCc-hHHHHHHHHHHHHhhhccccCCCceEEEe
Confidence 99999 56999999999999998887 7789999999999987765332 22322 333333 245789999
Q ss_pred ecCchhHhhhhhcChHHHhccc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhh
Q 002012 404 ATTLNEYRNYIEKDPALERRFQ-QVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYI 472 (982)
Q Consensus 404 at~~~~~~~~~~~d~al~rRf~-~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i 472 (982)
+||-+. .+|.+++|||+ .|+|+.|....+..+++-.+.. ..-.+++..+..+....++|.
T Consensus 275 ATNiPw-----~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~----tp~~LT~~d~~eL~~kTeGyS 335 (439)
T KOG0739|consen 275 ATNIPW-----VLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGD----TPHVLTEQDFKELARKTEGYS 335 (439)
T ss_pred cCCCch-----hHHHHHHHHhhcceeccCCcHHHhhhhheeccCC----CccccchhhHHHHHhhcCCCC
Confidence 999987 79999999997 9999999998888887643332 234578888888888877764
No 71
>PLN03025 replication factor C subunit; Provisional
Probab=99.76 E-value=1.3e-17 Score=186.85 Aligned_cols=193 Identities=19% Similarity=0.242 Sum_probs=150.1
Q ss_pred hhHHHhhcCCCCCcccchHHHHHHHHHhccCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEeccccc
Q 002012 258 DLTELARSGKLDPVIGRDDEIRRCIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLV 337 (982)
Q Consensus 258 ~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~ 337 (982)
+|.+++||.++++++|+++.+..+..++..+..+|++|+||||||||++|+++|+.+.+... ...+++++.++..
T Consensus 2 ~w~~kyrP~~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~-----~~~~~eln~sd~~ 76 (319)
T PLN03025 2 PWVEKYRPTKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNY-----KEAVLELNASDDR 76 (319)
T ss_pred ChhhhcCCCCHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcccC-----ccceeeecccccc
Confidence 68999999999999999999999888888777789999999999999999999999854321 2345666654332
Q ss_pred ccccccccHHHHHHHHHHHHHh------cCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcC--CCeEEEEecCchh
Q 002012 338 AGTCYRGDFEKRLKAVLKEVTK------SNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGR--GELRCIGATTLNE 409 (982)
Q Consensus 338 ~~~~~~g~~e~~l~~l~~~~~~------~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~--g~i~vI~at~~~~ 409 (982)
. .. .++..++.... .+...|++|||+|.+. .+.++.|+..++. +...+|.+||...
T Consensus 77 ~----~~----~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt--------~~aq~aL~~~lE~~~~~t~~il~~n~~~ 140 (319)
T PLN03025 77 G----ID----VVRNKIKMFAQKKVTLPPGRHKIVILDEADSMT--------SGAQQALRRTMEIYSNTTRFALACNTSS 140 (319)
T ss_pred c----HH----HHHHHHHHHHhccccCCCCCeEEEEEechhhcC--------HHHHHHHHHHHhcccCCceEEEEeCCcc
Confidence 1 11 23333332221 1235699999999996 4567888888874 4567888888765
Q ss_pred HhhhhhcChHHHhccceEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCCcchhhHHHH
Q 002012 410 YRNYIEKDPALERRFQQVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLPDKAIDLVD 486 (982)
Q Consensus 410 ~~~~~~~d~al~rRf~~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~p~~a~~lld 486 (982)
.+.+++++||..+.|..|+.+++...|+.++++ .++.++++++.+++..+++.+ +.++..++
T Consensus 141 -----~i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~~~----egi~i~~~~l~~i~~~~~gDl------R~aln~Lq 202 (319)
T PLN03025 141 -----KIIEPIQSRCAIVRFSRLSDQEILGRLMKVVEA----EKVPYVPEGLEAIIFTADGDM------RQALNNLQ 202 (319)
T ss_pred -----ccchhHHHhhhcccCCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH------HHHHHHHH
Confidence 578999999999999999999999999888876 689999999999999987543 67777776
No 72
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=1e-17 Score=178.49 Aligned_cols=200 Identities=25% Similarity=0.401 Sum_probs=149.4
Q ss_pred hcccccchHHHHHHHHHHHHH--------hcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccc
Q 002012 662 HKRVIGQDIAVKSVADAIRRS--------RAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYM 733 (982)
Q Consensus 662 ~~~iiGq~~a~~~l~~~i~~~--------~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~ 733 (982)
..+|-|.++.++.|.+++... ..|+. .|.+ +|||||||||||.+|+++|..- +..|+++..|++.
T Consensus 150 Y~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~---PPKG-VLLYGPPGTGKTLLAkAVA~~T---~AtFIrvvgSElV 222 (406)
T COG1222 150 YEDIGGLDEQIQEIREVVELPLKNPELFEELGID---PPKG-VLLYGPPGTGKTLLAKAVANQT---DATFIRVVGSELV 222 (406)
T ss_pred hhhccCHHHHHHHHHHHhcccccCHHHHHHcCCC---CCCc-eEeeCCCCCcHHHHHHHHHhcc---CceEEEeccHHHH
Confidence 478999999999999998532 23443 2334 9999999999999999999986 8899999999985
Q ss_pred cccccccccCCCCCccccccCCchhHHHhhCCCeEEEEcccccc-----------CHHHHHHHHHhhhcCceecCCCcEE
Q 002012 734 EKHSVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEIEKA-----------HQDVFNILLQLLDDGRITDSQGRTV 802 (982)
Q Consensus 734 ~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~~~~~Vl~lDEidkl-----------~~~~~~~Ll~~le~g~~~d~~g~~~ 802 (982)
. +++|..+. -.+.++...+...+|||||||||.. +.++|..|+++|.+=-=.|+
T Consensus 223 q-----KYiGEGaR-----lVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~----- 287 (406)
T COG1222 223 Q-----KYIGEGAR-----LVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDP----- 287 (406)
T ss_pred H-----HHhccchH-----HHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCC-----
Confidence 4 45554332 2256888899999999999999976 35699999999864110122
Q ss_pred ecccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHH--hccccccccCCCChhHHHHHHHHHH
Q 002012 803 SFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFL--NRIDEYIVFQPLDSKEISKIVEIQM 880 (982)
Q Consensus 803 ~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll--~Rid~ii~F~pl~~~~l~~il~~~l 880 (982)
..|+-|||+||...- ++|+|+ +|||..|.|+.++.+...+|++.+-
T Consensus 288 -~~nvKVI~ATNR~D~-------------------------------LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHt 335 (406)
T COG1222 288 -RGNVKVIMATNRPDI-------------------------------LDPALLRPGRFDRKIEFPLPDEEGRAEILKIHT 335 (406)
T ss_pred -CCCeEEEEecCCccc-------------------------------cChhhcCCCcccceeecCCCCHHHHHHHHHHHh
Confidence 258999999997532 678887 8999999999999999999999887
Q ss_pred HHHHHHHHhCCCCccCCHHH-HHHHHhcCCCCCCCchHHHHHHHHHHHH
Q 002012 881 NRVKDRLKQKKIDLHYTKEA-VTLLGILGFDPNFGARPVKRVIQQLVEN 928 (982)
Q Consensus 881 ~~~~~~~~~~~~~l~i~~~a-~~~L~~~~~~~~~gaR~L~~~i~~~l~~ 928 (982)
++ ..+++++ ++.|+.. ...+++.+|+.++...=+-
T Consensus 336 rk-----------M~l~~dvd~e~la~~--~~g~sGAdlkaictEAGm~ 371 (406)
T COG1222 336 RK-----------MNLADDVDLELLARL--TEGFSGADLKAICTEAGMF 371 (406)
T ss_pred hh-----------ccCccCcCHHHHHHh--cCCCchHHHHHHHHHHhHH
Confidence 76 2233333 3555553 3345567888888874333
No 73
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.76 E-value=2.5e-17 Score=202.78 Aligned_cols=228 Identities=19% Similarity=0.283 Sum_probs=176.7
Q ss_pred cccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEecccccccccccccc
Q 002012 663 KRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRLV 742 (982)
Q Consensus 663 ~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l~ 742 (982)
..++|++.+++.+.+.+...... ..++||.|++|||||.+|++|+......+.+|+.+||..+....-...++
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~~-------~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~~~~~lf 448 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQS-------DSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLF 448 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhCC-------CCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChhHhhhhhc
Confidence 57999999999999888865321 12499999999999999999999886667899999999875433345677
Q ss_pred CCCCCc-cccccCCchhHHHhhCCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCChHHHH
Q 002012 743 GAPPGY-VGYEEGGQLTEVVRRRPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYIL 821 (982)
Q Consensus 743 g~~~g~-vg~~~~~~l~~~l~~~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~i~ 821 (982)
|...+. .|... .-.+.+..+.+++||||||+.+++++|..|+.+|+++.+....+......++.+|++|+.......
T Consensus 449 g~~~~~~~g~~~--~~~g~le~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~ 526 (686)
T PRK15429 449 GHERGAFTGASA--QRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMV 526 (686)
T ss_pred Cccccccccccc--chhhHHHhcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCCHHHHH
Confidence 765432 22111 123456677789999999999999999999999999987765544444467999999998765433
Q ss_pred HhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhcccc-ccccCCCCh--hHHHHHHHHHHHHHHHHHHhCCCCccCCH
Q 002012 822 ETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDE-YIVFQPLDS--KEISKIVEIQMNRVKDRLKQKKIDLHYTK 898 (982)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~-ii~F~pl~~--~~l~~il~~~l~~~~~~~~~~~~~l~i~~ 898 (982)
. .+.|+++|++|+.. .|..|||.+ +|+..+++.++.++..++.... ..+++
T Consensus 527 ~------------------------~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~--~~~s~ 580 (686)
T PRK15429 527 A------------------------DREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNI--DSIPA 580 (686)
T ss_pred H------------------------cCcccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCC--CCcCH
Confidence 3 24589999999866 588999986 7899999999988765432221 36999
Q ss_pred HHHHHHHhcCCCCCCCchHHHHHHHHHHH
Q 002012 899 EAVTLLGILGFDPNFGARPVKRVIQQLVE 927 (982)
Q Consensus 899 ~a~~~L~~~~~~~~~gaR~L~~~i~~~l~ 927 (982)
++++.|..+.|++|+ |+|+++|++.+.
T Consensus 581 ~al~~L~~y~WPGNv--rEL~~~i~~a~~ 607 (686)
T PRK15429 581 ETLRTLSNMEWPGNV--RELENVIERAVL 607 (686)
T ss_pred HHHHHHHhCCCCCcH--HHHHHHHHHHHH
Confidence 999999999999877 899999998553
No 74
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.75 E-value=3.7e-17 Score=169.19 Aligned_cols=193 Identities=23% Similarity=0.282 Sum_probs=147.0
Q ss_pred hHHHhhcCCCCCcccchHHHHHHHHHhc-----cCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEec
Q 002012 259 LTELARSGKLDPVIGRDDEIRRCIQILS-----RRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDM 333 (982)
Q Consensus 259 l~~~~~~~~l~~liG~~~~i~~l~~~L~-----~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~ 333 (982)
.....||..|++.|||++..+.+--.+. ....-|+||+||||.||||+|..+|+++ +..+.....
T Consensus 16 ~e~~lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Em----------gvn~k~tsG 85 (332)
T COG2255 16 IERSLRPKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANEL----------GVNLKITSG 85 (332)
T ss_pred hhcccCcccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHh----------cCCeEeccc
Confidence 3445689999999999886655443332 2345699999999999999999999999 666555432
Q ss_pred ccccccccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCC----------------
Q 002012 334 ASLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRG---------------- 397 (982)
Q Consensus 334 ~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g---------------- 397 (982)
..+. -...+-.++..++ .+-||||||||++. ..+-.+|-++||..
T Consensus 86 p~le--------K~gDlaaiLt~Le---~~DVLFIDEIHrl~--------~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ 146 (332)
T COG2255 86 PALE--------KPGDLAAILTNLE---EGDVLFIDEIHRLS--------PAVEEVLYPAMEDFRLDIIIGKGPAARSIR 146 (332)
T ss_pred cccc--------ChhhHHHHHhcCC---cCCeEEEehhhhcC--------hhHHHHhhhhhhheeEEEEEccCCccceEe
Confidence 2222 1112334444443 33499999999996 56778899999743
Q ss_pred ----CeEEEEecCchhHhhhhhcChHHHhccc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhh
Q 002012 398 ----ELRCIGATTLNEYRNYIEKDPALERRFQ-QVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYI 472 (982)
Q Consensus 398 ----~i~vI~at~~~~~~~~~~~d~al~rRf~-~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i 472 (982)
.+.+|||||... .+...|+.||. ...+..++.+|+..|+..-... .++.+++++...++..|.
T Consensus 147 ldLppFTLIGATTr~G-----~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~----l~i~i~~~~a~eIA~rSR--- 214 (332)
T COG2255 147 LDLPPFTLIGATTRAG-----MLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKI----LGIEIDEEAALEIARRSR--- 214 (332)
T ss_pred ccCCCeeEeeeccccc-----cccchhHHhcCCeeeeecCCHHHHHHHHHHHHHH----hCCCCChHHHHHHHHhcc---
Confidence 458999999998 68889999997 7899999999999999876655 689999999999988865
Q ss_pred ccCCCcchhhHHHHHHHHHhhhh
Q 002012 473 TERFLPDKAIDLVDEAAAKLKME 495 (982)
Q Consensus 473 ~~~~~p~~a~~lld~a~~~~~~~ 495 (982)
..|+-|..|+....-.+...
T Consensus 215 ---GTPRIAnRLLrRVRDfa~V~ 234 (332)
T COG2255 215 ---GTPRIANRLLRRVRDFAQVK 234 (332)
T ss_pred ---CCcHHHHHHHHHHHHHHHHh
Confidence 57899999988777665544
No 75
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.75 E-value=2.8e-17 Score=190.83 Aligned_cols=203 Identities=25% Similarity=0.268 Sum_probs=151.8
Q ss_pred hhHHHhhcCCCCCcccchHHHHHHHHHhccCCCCC-cEEeCCCCCcHHHHHHHHHHHhhcCCCCCC--------------
Q 002012 258 DLTELARSGKLDPVIGRDDEIRRCIQILSRRTKNN-PVIIGEPGVGKTAIAEGLAQRIVRGDVPET-------------- 322 (982)
Q Consensus 258 ~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~-iLL~GppGvGKT~la~~la~~l~~~~~p~~-------------- 322 (982)
.|.+++||.+|+++||+++.++.+...+..+..+| +||+|||||||||+|+.+|+.+.+...+..
T Consensus 3 ~l~~kyRP~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~ 82 (472)
T PRK14962 3 ALYRKYRPKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDE 82 (472)
T ss_pred hhHHHHCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhc
Confidence 57889999999999999999888888887766655 799999999999999999999865321110
Q ss_pred CCCCeEEEEecccccccccccccHHHHHHHHHHHHHh---cCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcC--C
Q 002012 323 LQNRKLISLDMASLVAGTCYRGDFEKRLKAVLKEVTK---SNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGR--G 397 (982)
Q Consensus 323 l~~~~v~~l~~~~l~~~~~~~g~~e~~l~~l~~~~~~---~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~--g 397 (982)
.....++.++.+. ..| ...++.+.+.+.. .+...|+||||+|.+. .+.++.|+..++. +
T Consensus 83 g~~~dv~el~aa~------~~g--id~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt--------~~a~~~LLk~LE~p~~ 146 (472)
T PRK14962 83 GTFMDVIELDAAS------NRG--IDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLT--------KEAFNALLKTLEEPPS 146 (472)
T ss_pred CCCCccEEEeCcc------cCC--HHHHHHHHHHHhhChhcCCeEEEEEEChHHhH--------HHHHHHHHHHHHhCCC
Confidence 0112455555321 112 1233444444332 1345699999999996 4566788888886 7
Q ss_pred CeEEEEecCchhHhhhhhcChHHHhccceEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCC
Q 002012 398 ELRCIGATTLNEYRNYIEKDPALERRFQQVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFL 477 (982)
Q Consensus 398 ~i~vI~at~~~~~~~~~~~d~al~rRf~~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~ 477 (982)
.+.+|++|+.+. .+++++.+||..+.+.+++.+++..+++..... .++.++++++..++..+.+-+
T Consensus 147 ~vv~Ilattn~~-----kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~----egi~i~~eal~~Ia~~s~Gdl----- 212 (472)
T PRK14962 147 HVVFVLATTNLE-----KVPPTIISRCQVIEFRNISDELIIKRLQEVAEA----EGIEIDREALSFIAKRASGGL----- 212 (472)
T ss_pred cEEEEEEeCChH-----hhhHHHhcCcEEEEECCccHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHhCCCH-----
Confidence 888888888654 579999999999999999999999999887765 588999999999999876433
Q ss_pred cchhhHHHHHHHHH
Q 002012 478 PDKAIDLVDEAAAK 491 (982)
Q Consensus 478 p~~a~~lld~a~~~ 491 (982)
+.+++.++.++..
T Consensus 213 -R~aln~Le~l~~~ 225 (472)
T PRK14962 213 -RDALTMLEQVWKF 225 (472)
T ss_pred -HHHHHHHHHHHHh
Confidence 5677777765543
No 76
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.75 E-value=9.6e-18 Score=168.72 Aligned_cols=162 Identities=20% Similarity=0.343 Sum_probs=123.9
Q ss_pred cccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccccccccCC
Q 002012 665 VIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRLVGA 744 (982)
Q Consensus 665 iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l~g~ 744 (982)
++|.+.+++.+.+.++.... .+ .++|++|++||||+.+|++|++.....+.||+.+||+.+........|||.
T Consensus 1 liG~s~~m~~~~~~~~~~a~------~~-~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~ 73 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS------SD-LPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGH 73 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT------ST-S-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEB
T ss_pred CEeCCHHHHHHHHHHHHHhC------CC-CCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhcc
Confidence 68999999999998887631 12 349999999999999999999988777899999999999766556678998
Q ss_pred CCCc-cccccCCchhHHHhhCCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCChHHHHHh
Q 002012 745 PPGY-VGYEEGGQLTEVVRRRPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILET 823 (982)
Q Consensus 745 ~~g~-vg~~~~~~l~~~l~~~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~i~~~ 823 (982)
..+. .|... .-.+.+..+.+++||||||+.+++.+|..|+++|+++.+....+......+++||+||+.+....+..
T Consensus 74 ~~~~~~~~~~--~~~G~l~~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~~l~~~v~~ 151 (168)
T PF00158_consen 74 EKGAFTGARS--DKKGLLEQANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSKDLEELVEQ 151 (168)
T ss_dssp CSSSSTTTSS--EBEHHHHHTTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS-HHHHHHT
T ss_pred cccccccccc--ccCCceeeccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCcCHHHHHHc
Confidence 6653 22221 13478999999999999999999999999999999999887655555557899999999887655542
Q ss_pred hhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccc
Q 002012 824 LQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRID 859 (982)
Q Consensus 824 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid 859 (982)
+.|+++|++|+.
T Consensus 152 ------------------------g~fr~dLy~rL~ 163 (168)
T PF00158_consen 152 ------------------------GRFREDLYYRLN 163 (168)
T ss_dssp ------------------------TSS-HHHHHHHT
T ss_pred ------------------------CCChHHHHHHhc
Confidence 569999999995
No 77
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.75 E-value=1.3e-17 Score=201.76 Aligned_cols=198 Identities=25% Similarity=0.336 Sum_probs=154.4
Q ss_pred hhhHHHhhcCCCCCcccchHHHH---HHHHHhccCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEec
Q 002012 257 NDLTELARSGKLDPVIGRDDEIR---RCIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDM 333 (982)
Q Consensus 257 ~~l~~~~~~~~l~~liG~~~~i~---~l~~~L~~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~ 333 (982)
.+|.+++||.+|++++|+++.+. .+..++......|++|+|||||||||+|+++++.+ +..++.+++
T Consensus 16 ~PLaek~RP~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~----------~~~f~~lna 85 (725)
T PRK13341 16 APLADRLRPRTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT----------RAHFSSLNA 85 (725)
T ss_pred CChHHhcCCCcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh----------cCcceeehh
Confidence 37999999999999999999874 56666677777899999999999999999999887 566667664
Q ss_pred ccccccccccccHHHHHHHHHHHH----HhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCCCeEEEEecCchh
Q 002012 334 ASLVAGTCYRGDFEKRLKAVLKEV----TKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRGELRCIGATTLNE 409 (982)
Q Consensus 334 ~~l~~~~~~~g~~e~~l~~l~~~~----~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g~i~vI~at~~~~ 409 (982)
.. .+. ..++..++.+ ...+.+.||||||||.+. ...++.|++.++++.+.+|++||.+.
T Consensus 86 ~~--~~i-------~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln--------~~qQdaLL~~lE~g~IiLI~aTTenp 148 (725)
T PRK13341 86 VL--AGV-------KDLRAEVDRAKERLERHGKRTILFIDEVHRFN--------KAQQDALLPWVENGTITLIGATTENP 148 (725)
T ss_pred hh--hhh-------HHHHHHHHHHHHHhhhcCCceEEEEeChhhCC--------HHHHHHHHHHhcCceEEEEEecCCCh
Confidence 32 111 1122333332 222345699999999986 45567899999999999999998876
Q ss_pred HhhhhhcChHHHhccceEEecCCCHHHHHHHHHHHHHHHhh---hcCCccChHHHHHHHHHhhhhhccCCCcchhhHHHH
Q 002012 410 YRNYIEKDPALERRFQQVFCDQPSVENTISILRGLRERYEL---HHGVKISDSALVSAAVLADRYITERFLPDKAIDLVD 486 (982)
Q Consensus 410 ~~~~~~~d~al~rRf~~i~i~~Ps~~e~~~IL~~~~~~~~~---~~~v~i~~~~l~~~~~~s~r~i~~~~~p~~a~~lld 486 (982)
+ +.+++++.+|+..+.+++++.+++..+++..+..+.. ..++.++++++..++..+.+.+ +.+.++++
T Consensus 149 ~---~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~------R~lln~Le 219 (725)
T PRK13341 149 Y---FEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDA------RSLLNALE 219 (725)
T ss_pred H---hhhhhHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCH------HHHHHHHH
Confidence 4 3678999999999999999999999999888775443 2458899999999999976543 67778888
Q ss_pred HHHH
Q 002012 487 EAAA 490 (982)
Q Consensus 487 ~a~~ 490 (982)
.++.
T Consensus 220 ~a~~ 223 (725)
T PRK13341 220 LAVE 223 (725)
T ss_pred HHHH
Confidence 7764
No 78
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=99.75 E-value=3.6e-17 Score=172.90 Aligned_cols=222 Identities=20% Similarity=0.319 Sum_probs=182.9
Q ss_pred hcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccccccc
Q 002012 662 HKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRL 741 (982)
Q Consensus 662 ~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l 741 (982)
++.+++++..++.+....++... +.. .+|+.|.+||||..+|++.+........||+.+||..+.+....+.+
T Consensus 203 F~~~v~~S~~mk~~v~qA~k~Am-lDA------PLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~~aEsEl 275 (511)
T COG3283 203 FEQIVAVSPKMKHVVEQAQKLAM-LDA------PLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPEDAAESEL 275 (511)
T ss_pred hHHHhhccHHHHHHHHHHHHhhc-cCC------CeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCchhHhHHHH
Confidence 46788888888887766654321 221 29999999999999999999988888899999999999988888899
Q ss_pred cCCCCCccccccCCchhHHHhhCCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCChHHHH
Q 002012 742 VGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYIL 821 (982)
Q Consensus 742 ~g~~~g~vg~~~~~~l~~~l~~~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~i~ 821 (982)
||..+|..|+ .+.+..+.++.+|+|||..|+|..|..|+.++.+|.|..-.+..--+-++.+|+||..+...+.
T Consensus 276 FG~apg~~gk------~GffE~AngGTVlLDeIgEmSp~lQaKLLRFL~DGtFRRVGee~Ev~vdVRVIcatq~nL~~lv 349 (511)
T COG3283 276 FGHAPGDEGK------KGFFEQANGGTVLLDEIGEMSPRLQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQVNLVELV 349 (511)
T ss_pred hcCCCCCCCc------cchhhhccCCeEEeehhhhcCHHHHHHHHHHhcCCceeecCCcceEEEEEEEEecccccHHHHH
Confidence 9998874332 3467778888999999999999999999999999999876655555678999999998876665
Q ss_pred HhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhcccc-ccccCCCCh--hHHHHHHHHHHHHHHHHHHhCCCCccCCH
Q 002012 822 ETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDE-YIVFQPLDS--KEISKIVEIQMNRVKDRLKQKKIDLHYTK 898 (982)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~-ii~F~pl~~--~~l~~il~~~l~~~~~~~~~~~~~l~i~~ 898 (982)
+. +.|+.+++.|++. .+..||+.+ +++.-+.+.++.++++++.- ...++++
T Consensus 350 ~~------------------------g~fReDLfyRLNVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~--p~pkl~~ 403 (511)
T COG3283 350 QK------------------------GKFREDLFYRLNVLTLNLPPLRERPQDIMPLAELFVQQFSDELGV--PRPKLAA 403 (511)
T ss_pred hc------------------------CchHHHHHHHhheeeecCCccccCcccchHHHHHHHHHHHHHhCC--CCCccCH
Confidence 42 4588899999976 578889876 78999999999988766533 2478999
Q ss_pred HHHHHHHhcCCCCCCCchHHHHHHHH
Q 002012 899 EAVTLLGILGFDPNFGARPVKRVIQQ 924 (982)
Q Consensus 899 ~a~~~L~~~~~~~~~gaR~L~~~i~~ 924 (982)
+.+.+|..+.|++|. |.|+++|.+
T Consensus 404 ~~~~~L~~y~WpGNV--RqL~N~iyR 427 (511)
T COG3283 404 DLLTVLTRYAWPGNV--RQLKNAIYR 427 (511)
T ss_pred HHHHHHHHcCCCccH--HHHHHHHHH
Confidence 999999999999865 899888887
No 79
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.75 E-value=2.3e-17 Score=187.69 Aligned_cols=201 Identities=20% Similarity=0.298 Sum_probs=151.6
Q ss_pred cCCCCCcccchHHHHHHHHHhc----c---------CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEE
Q 002012 265 SGKLDPVIGRDDEIRRCIQILS----R---------RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISL 331 (982)
Q Consensus 265 ~~~l~~liG~~~~i~~l~~~L~----~---------~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l 331 (982)
.-+++++.|.+..++.+.+.+. . ..+.++||+||||||||++|+++|..+ +..++.+
T Consensus 141 ~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l----------~~~fi~i 210 (398)
T PTZ00454 141 DVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT----------TATFIRV 210 (398)
T ss_pred CCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc----------CCCEEEE
Confidence 3467889999887776666442 1 356789999999999999999999987 7788888
Q ss_pred ecccccccccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCC---CCchhhHHHHHHhhhc-------CCCeEE
Q 002012 332 DMASLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGN---QSGAMDASNMLKPMLG-------RGELRC 401 (982)
Q Consensus 332 ~~~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~---~~~~~~~~~~L~~~le-------~g~i~v 401 (982)
..+.+. .+|.|+.+..++.+|..+.. ..|+||||||+|.+...+. ++....+...+..++. ..++.+
T Consensus 211 ~~s~l~--~k~~ge~~~~lr~lf~~A~~-~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~V 287 (398)
T PTZ00454 211 VGSEFV--QKYLGEGPRMVRDVFRLARE-NAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKV 287 (398)
T ss_pred ehHHHH--HHhcchhHHHHHHHHHHHHh-cCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEE
Confidence 877766 35788888889999988875 6788999999999976542 1222334444444432 357899
Q ss_pred EEecCchhHhhhhhcChHHHh--ccc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCCc
Q 002012 402 IGATTLNEYRNYIEKDPALER--RFQ-QVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLP 478 (982)
Q Consensus 402 I~at~~~~~~~~~~~d~al~r--Rf~-~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~p 478 (982)
|++||..+ .+||++.| ||+ .|+|+.|+.+++..||+.+..++.... +-.+..++.. +.++.+
T Consensus 288 I~aTN~~d-----~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~-----dvd~~~la~~-----t~g~sg 352 (398)
T PTZ00454 288 IMATNRAD-----TLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSE-----EVDLEDFVSR-----PEKISA 352 (398)
T ss_pred EEecCCch-----hCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCc-----ccCHHHHHHH-----cCCCCH
Confidence 99999988 79999998 997 899999999999999998877643221 1224455555 445678
Q ss_pred chhhHHHHHHHHHhh
Q 002012 479 DKAIDLVDEAAAKLK 493 (982)
Q Consensus 479 ~~a~~lld~a~~~~~ 493 (982)
.+...++.+|+..+-
T Consensus 353 aDI~~l~~eA~~~A~ 367 (398)
T PTZ00454 353 ADIAAICQEAGMQAV 367 (398)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998886544
No 80
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.75 E-value=1.9e-17 Score=194.21 Aligned_cols=204 Identities=22% Similarity=0.196 Sum_probs=159.5
Q ss_pred hhhHHHhhcCCCCCcccchHHHHHHHHHhccCCCCC-cEEeCCCCCcHHHHHHHHHHHhhcCCCCCC-------------
Q 002012 257 NDLTELARSGKLDPVIGRDDEIRRCIQILSRRTKNN-PVIIGEPGVGKTAIAEGLAQRIVRGDVPET------------- 322 (982)
Q Consensus 257 ~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~-iLL~GppGvGKT~la~~la~~l~~~~~p~~------------- 322 (982)
..|.++|||.+|+++||+++.++.+.+.+.....+| +||+||+|||||++|+.+|+.+.+...+..
T Consensus 4 ~~l~~kyRP~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~ 83 (509)
T PRK14958 4 QVLARKWRPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREID 83 (509)
T ss_pred hhHHHHHCCCCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHh
Confidence 358999999999999999999999999998877777 489999999999999999999976432211
Q ss_pred -CCCCeEEEEecccccccccccccHHHHHHHHHHHHHh---cCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcC--
Q 002012 323 -LQNRKLISLDMASLVAGTCYRGDFEKRLKAVLKEVTK---SNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGR-- 396 (982)
Q Consensus 323 -l~~~~v~~l~~~~l~~~~~~~g~~e~~l~~l~~~~~~---~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~-- 396 (982)
.....++++|.++- . ..+.++++++.+.. .++..|+||||+|+|. .+.+|.|+..++.
T Consensus 84 ~g~~~d~~eidaas~------~--~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls--------~~a~naLLk~LEepp 147 (509)
T PRK14958 84 EGRFPDLFEVDAASR------T--KVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLS--------GHSFNALLKTLEEPP 147 (509)
T ss_pred cCCCceEEEEccccc------C--CHHHHHHHHHHHhhccccCCcEEEEEEChHhcC--------HHHHHHHHHHHhccC
Confidence 11123666664321 1 12235556655442 2345699999999996 5667888888885
Q ss_pred CCeEEEEecCchhHhhhhhcChHHHhccceEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCC
Q 002012 397 GELRCIGATTLNEYRNYIEKDPALERRFQQVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERF 476 (982)
Q Consensus 397 g~i~vI~at~~~~~~~~~~~d~al~rRf~~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~ 476 (982)
..+.+|++||... .+.+.+++||..+.+..++.+++...++.++.. .++.++++++..++..+++
T Consensus 148 ~~~~fIlattd~~-----kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~----egi~~~~~al~~ia~~s~G------ 212 (509)
T PRK14958 148 SHVKFILATTDHH-----KLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKE----ENVEFENAALDLLARAANG------ 212 (509)
T ss_pred CCeEEEEEECChH-----hchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCC------
Confidence 5889999988765 577889999999999999999999988888877 5889999999999999764
Q ss_pred CcchhhHHHHHHHHH
Q 002012 477 LPDKAIDLVDEAAAK 491 (982)
Q Consensus 477 ~p~~a~~lld~a~~~ 491 (982)
.++++..+++.++++
T Consensus 213 slR~al~lLdq~ia~ 227 (509)
T PRK14958 213 SVRDALSLLDQSIAY 227 (509)
T ss_pred cHHHHHHHHHHHHhc
Confidence 358999999988765
No 81
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.75 E-value=3.7e-17 Score=188.67 Aligned_cols=204 Identities=20% Similarity=0.222 Sum_probs=161.8
Q ss_pred hhHHHhhcCCCCCcccchHHHHHHHHHhccCCCC-CcEEeCCCCCcHHHHHHHHHHHhhcCCCCCC--------------
Q 002012 258 DLTELARSGKLDPVIGRDDEIRRCIQILSRRTKN-NPVIIGEPGVGKTAIAEGLAQRIVRGDVPET-------------- 322 (982)
Q Consensus 258 ~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~-~iLL~GppGvGKT~la~~la~~l~~~~~p~~-------------- 322 (982)
.|..+|||.+|+++||++..++.+.+.+..+... ++||+||+||||||+|+.+|+.+.+...|..
T Consensus 2 ~la~KyRP~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~ 81 (491)
T PRK14964 2 NLALKYRPSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKN 81 (491)
T ss_pred ChhHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhc
Confidence 4788999999999999999999998888776555 5899999999999999999999876443321
Q ss_pred CCCCeEEEEecccccccccccccHHHHHHHHHHHHHhc---CCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcC--C
Q 002012 323 LQNRKLISLDMASLVAGTCYRGDFEKRLKAVLKEVTKS---NGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGR--G 397 (982)
Q Consensus 323 l~~~~v~~l~~~~l~~~~~~~g~~e~~l~~l~~~~~~~---~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~--g 397 (982)
.....++++|.++-. | .+.++.+++.+... +...|++|||+|.|. ..++|.|+..++. .
T Consensus 82 ~~~~Dv~eidaas~~------~--vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls--------~~A~NaLLK~LEePp~ 145 (491)
T PRK14964 82 SNHPDVIEIDAASNT------S--VDDIKVILENSCYLPISSKFKVYIIDEVHMLS--------NSAFNALLKTLEEPAP 145 (491)
T ss_pred cCCCCEEEEecccCC------C--HHHHHHHHHHHHhccccCCceEEEEeChHhCC--------HHHHHHHHHHHhCCCC
Confidence 234566777754321 1 23455666655422 345699999999986 4567888888984 6
Q ss_pred CeEEEEecCchhHhhhhhcChHHHhccceEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCC
Q 002012 398 ELRCIGATTLNEYRNYIEKDPALERRFQQVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFL 477 (982)
Q Consensus 398 ~i~vI~at~~~~~~~~~~~d~al~rRf~~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~ 477 (982)
.+.+|++||... .+.+.+++||+.+.+..++.+++...++.++.+ .++.++++++..++..+++.
T Consensus 146 ~v~fIlatte~~-----Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~----Egi~i~~eAL~lIa~~s~Gs------ 210 (491)
T PRK14964 146 HVKFILATTEVK-----KIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKK----ENIEHDEESLKLIAENSSGS------ 210 (491)
T ss_pred CeEEEEEeCChH-----HHHHHHHHhheeeecccccHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC------
Confidence 788999998766 577899999999999999999999999888887 68899999999999998743
Q ss_pred cchhhHHHHHHHHHh
Q 002012 478 PDKAIDLVDEAAAKL 492 (982)
Q Consensus 478 p~~a~~lld~a~~~~ 492 (982)
++++..+++.++.+.
T Consensus 211 lR~alslLdqli~y~ 225 (491)
T PRK14964 211 MRNALFLLEQAAIYS 225 (491)
T ss_pred HHHHHHHHHHHHHhc
Confidence 478899999988754
No 82
>CHL00181 cbbX CbbX; Provisional
Probab=99.75 E-value=4.2e-17 Score=178.52 Aligned_cols=187 Identities=21% Similarity=0.280 Sum_probs=140.9
Q ss_pred CcccchHHHHHHHHHhc---------------cCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecc
Q 002012 270 PVIGRDDEIRRCIQILS---------------RRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMA 334 (982)
Q Consensus 270 ~liG~~~~i~~l~~~L~---------------~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~ 334 (982)
+++|.++..+++.++.. ..+..|++|+||||||||++|+++|+.+....+ +...+++.++.+
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~---~~~~~~~~v~~~ 100 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGY---IKKGHLLTVTRD 100 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCC---CCCCceEEecHH
Confidence 58888776655544321 123457899999999999999999998754322 234568888887
Q ss_pred cccccccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCC-CCchhhHHHHHHhhhcC--CCeEEEEecCchhHh
Q 002012 335 SLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGN-QSGAMDASNMLKPMLGR--GELRCIGATTLNEYR 411 (982)
Q Consensus 335 ~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~-~~~~~~~~~~L~~~le~--g~i~vI~at~~~~~~ 411 (982)
++.+. |.|+.+.+...+++.+. +.||||||+|.+...+. ...+.++++.|...|+. +++++|++++...+.
T Consensus 101 ~l~~~--~~g~~~~~~~~~l~~a~----ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~ 174 (287)
T CHL00181 101 DLVGQ--YIGHTAPKTKEVLKKAM----GGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMD 174 (287)
T ss_pred HHHHH--HhccchHHHHHHHHHcc----CCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHH
Confidence 77743 67777766667766542 24999999999864322 22346788889998874 578999999988888
Q ss_pred hhhhcChHHHhccc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhh
Q 002012 412 NYIEKDPALERRFQ-QVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLAD 469 (982)
Q Consensus 412 ~~~~~d~al~rRf~-~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~ 469 (982)
.++..+|+|.+||. .|.|+.++.+++.+|++.++.+ .+..+++++...+..+..
T Consensus 175 ~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~----~~~~l~~~~~~~L~~~i~ 229 (287)
T CHL00181 175 KFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEE----QQYQLTPEAEKALLDYIK 229 (287)
T ss_pred HHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHH----hcCCCChhHHHHHHHHHH
Confidence 88889999999997 8999999999999999998887 466788888777666543
No 83
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.74 E-value=1.4e-16 Score=187.57 Aligned_cols=228 Identities=21% Similarity=0.311 Sum_probs=175.5
Q ss_pred cccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEecccccccccccccc
Q 002012 663 KRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRLV 742 (982)
Q Consensus 663 ~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l~ 742 (982)
..++|.+..+..+...+.... ....++++.|++||||+.+|+.++......+.+|+.+||+.+.+..-.+.++
T Consensus 139 ~~lig~s~~~~~l~~~i~~~a-------~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~~~lf 211 (445)
T TIGR02915 139 RGLITSSPGMQKICRTIEKIA-------PSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELF 211 (445)
T ss_pred cceeecCHHHHHHHHHHHHHh-------CCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHHHHhc
Confidence 468999999988888776541 1112488999999999999999999886667899999999986544445678
Q ss_pred CCCCCc-cccccCCchhHHHhhCCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCChHHHH
Q 002012 743 GAPPGY-VGYEEGGQLTEVVRRRPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYIL 821 (982)
Q Consensus 743 g~~~g~-vg~~~~~~l~~~l~~~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~i~ 821 (982)
|...|. .|... ...+.+..+.+++||||||+.+++.+|..|+++++++.+....+......++.||+||+.......
T Consensus 212 g~~~~~~~~~~~--~~~g~~~~a~~gtl~l~~i~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~ 289 (445)
T TIGR02915 212 GYEKGAFTGAVK--QTLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMI 289 (445)
T ss_pred CCCCCCcCCCcc--CCCCceeECCCCEEEEechhhCCHHHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHHHHH
Confidence 865543 22211 123456677889999999999999999999999999887654444444468999999998765443
Q ss_pred HhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhcccc-ccccCCCCh--hHHHHHHHHHHHHHHHHHHhCCCCccCCH
Q 002012 822 ETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDE-YIVFQPLDS--KEISKIVEIQMNRVKDRLKQKKIDLHYTK 898 (982)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~-ii~F~pl~~--~~l~~il~~~l~~~~~~~~~~~~~l~i~~ 898 (982)
. .+.|+++|++|+.. .|..|||.. +|+..+++.+++++...+... ...+++
T Consensus 290 ~------------------------~~~~~~~L~~~l~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~--~~~~~~ 343 (445)
T TIGR02915 290 A------------------------EGTFREDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFARELKRK--TKGFTD 343 (445)
T ss_pred H------------------------cCCccHHHHHHhccceecCCCchhchhhHHHHHHHHHHHHHHHhCCC--CCCCCH
Confidence 2 14589999999864 688999975 789999999998876544322 257999
Q ss_pred HHHHHHHhcCCCCCCCchHHHHHHHHHHH
Q 002012 899 EAVTLLGILGFDPNFGARPVKRVIQQLVE 927 (982)
Q Consensus 899 ~a~~~L~~~~~~~~~gaR~L~~~i~~~l~ 927 (982)
++++.|..+.|++|. |+|+++|++.+.
T Consensus 344 ~a~~~L~~~~wpgNv--reL~~~i~~a~~ 370 (445)
T TIGR02915 344 DALRALEAHAWPGNV--RELENKVKRAVI 370 (445)
T ss_pred HHHHHHHhCCCCChH--HHHHHHHHHHHH
Confidence 999999999998766 899999998553
No 84
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.74 E-value=4.9e-17 Score=176.46 Aligned_cols=142 Identities=18% Similarity=0.179 Sum_probs=116.9
Q ss_pred CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccccccccccHHHHHHHHHHHHHh----cCCC
Q 002012 288 RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGTCYRGDFEKRLKAVLKEVTK----SNGQ 363 (982)
Q Consensus 288 ~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~~~~g~~e~~l~~l~~~~~~----~~~~ 363 (982)
+.+..++|+||||||||.+|+++|..+ +..++.++.+++.+ +|.|+.+..++++|..+.. ...+
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~el----------g~~~i~vsa~eL~s--k~vGEsEk~IR~~F~~A~~~a~~~~aP 213 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKM----------GIEPIVMSAGELES--ENAGEPGKLIRQRYREAADIIKKKGKM 213 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHc----------CCCeEEEEHHHhhc--CcCCcHHHHHHHHHHHHHHHhhccCCC
Confidence 567788999999999999999999999 89999999999994 5999999999999998874 3578
Q ss_pred eEEEEccchhhhhCCCCCc-h---hhHHHHHHhhhc----------------CCCeEEEEecCchhHhhhhhcChHHHh-
Q 002012 364 IILFIDELHTIIGAGNQSG-A---MDASNMLKPMLG----------------RGELRCIGATTLNEYRNYIEKDPALER- 422 (982)
Q Consensus 364 ~IL~IDEi~~l~~~~~~~~-~---~~~~~~L~~~le----------------~g~i~vI~at~~~~~~~~~~~d~al~r- 422 (982)
+||||||||.+.+...+.. . +-+...|+..++ ..++.||+|||.++ .+||+|+|
T Consensus 214 cVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd-----~LDpALlRp 288 (413)
T PLN00020 214 SCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFS-----TLYAPLIRD 288 (413)
T ss_pred eEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcc-----cCCHhHcCC
Confidence 9999999999987654221 1 222244554432 45689999999998 79999999
Q ss_pred -ccceEEecCCCHHHHHHHHHHHHHH
Q 002012 423 -RFQQVFCDQPSVENTISILRGLRER 447 (982)
Q Consensus 423 -Rf~~i~i~~Ps~~e~~~IL~~~~~~ 447 (982)
||+.. +..|+.+++.+||+.+..+
T Consensus 289 GRfDk~-i~lPd~e~R~eIL~~~~r~ 313 (413)
T PLN00020 289 GRMEKF-YWAPTREDRIGVVHGIFRD 313 (413)
T ss_pred CCCCce-eCCCCHHHHHHHHHHHhcc
Confidence 99853 4689999999999988776
No 85
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.74 E-value=6.9e-17 Score=189.04 Aligned_cols=205 Identities=21% Similarity=0.223 Sum_probs=157.5
Q ss_pred hhhHHHhhcCCCCCcccchHHHHHHHHHhccCCCCC-cEEeCCCCCcHHHHHHHHHHHhhcCCCCCC-------------
Q 002012 257 NDLTELARSGKLDPVIGRDDEIRRCIQILSRRTKNN-PVIIGEPGVGKTAIAEGLAQRIVRGDVPET------------- 322 (982)
Q Consensus 257 ~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~-iLL~GppGvGKT~la~~la~~l~~~~~p~~------------- 322 (982)
.+|.+++||..|+++||+++.++.+...+..+...| +||+||+|||||++|+.+|+.+.+......
T Consensus 4 ~~La~KyRP~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~ 83 (546)
T PRK14957 4 QALARKYRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAIN 83 (546)
T ss_pred hhHHHHHCcCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHh
Confidence 468999999999999999999999999988766666 679999999999999999999865321100
Q ss_pred -CCCCeEEEEecccccccccccccHHHHHHHHHHHHHh---cCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcC--
Q 002012 323 -LQNRKLISLDMASLVAGTCYRGDFEKRLKAVLKEVTK---SNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGR-- 396 (982)
Q Consensus 323 -l~~~~v~~l~~~~l~~~~~~~g~~e~~l~~l~~~~~~---~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~-- 396 (982)
.....++.++...- .| .+.++.+++.+.. .++..|+||||+|.+. ..++|.|+..++.
T Consensus 84 ~~~~~dlieidaas~------~g--vd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls--------~~a~naLLK~LEepp 147 (546)
T PRK14957 84 NNSFIDLIEIDAASR------TG--VEETKEILDNIQYMPSQGRYKVYLIDEVHMLS--------KQSFNALLKTLEEPP 147 (546)
T ss_pred cCCCCceEEeecccc------cC--HHHHHHHHHHHHhhhhcCCcEEEEEechhhcc--------HHHHHHHHHHHhcCC
Confidence 01124445543211 11 1234455554442 2455699999999986 5677899999986
Q ss_pred CCeEEEEecCchhHhhhhhcChHHHhccceEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCC
Q 002012 397 GELRCIGATTLNEYRNYIEKDPALERRFQQVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERF 476 (982)
Q Consensus 397 g~i~vI~at~~~~~~~~~~~d~al~rRf~~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~ 476 (982)
+.+.+|++||... .+.+.+++||..+.|..++.+++...|+.++.+ .++.++++++..++..+++.
T Consensus 148 ~~v~fIL~Ttd~~-----kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~----egi~~e~~Al~~Ia~~s~Gd----- 213 (546)
T PRK14957 148 EYVKFILATTDYH-----KIPVTILSRCIQLHLKHISQADIKDQLKIILAK----ENINSDEQSLEYIAYHAKGS----- 213 (546)
T ss_pred CCceEEEEECChh-----hhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC-----
Confidence 5888898887654 567789999999999999999999999888877 57899999999999998754
Q ss_pred CcchhhHHHHHHHHHh
Q 002012 477 LPDKAIDLVDEAAAKL 492 (982)
Q Consensus 477 ~p~~a~~lld~a~~~~ 492 (982)
.++++.+++.+++..
T Consensus 214 -lR~alnlLek~i~~~ 228 (546)
T PRK14957 214 -LRDALSLLDQAISFC 228 (546)
T ss_pred -HHHHHHHHHHHHHhc
Confidence 488999999888653
No 86
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.74 E-value=2.2e-17 Score=167.78 Aligned_cols=209 Identities=23% Similarity=0.322 Sum_probs=147.9
Q ss_pred HhhhcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEecccccccccc
Q 002012 659 EVLHKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSV 738 (982)
Q Consensus 659 ~~l~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~ 738 (982)
+...++++||++|++.-.-.++-..---....-.+.++||+||||||||++|+++|... ..|++.++..++.
T Consensus 117 ~it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~---kvp~l~vkat~li----- 188 (368)
T COG1223 117 DITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA---KVPLLLVKATELI----- 188 (368)
T ss_pred cccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc---CCceEEechHHHH-----
Confidence 44568999999999776554432211000011222369999999999999999999987 7889888877653
Q ss_pred ccccCCCCCcccc--ccCCchhHHHhhCCCeEEEEccccccCH------------HHHHHHHHhhhcCceecCCCcEEec
Q 002012 739 SRLVGAPPGYVGY--EEGGQLTEVVRRRPYSVVLFDEIEKAHQ------------DVFNILLQLLDDGRITDSQGRTVSF 804 (982)
Q Consensus 739 ~~l~g~~~g~vg~--~~~~~l~~~l~~~~~~Vl~lDEidkl~~------------~~~~~Ll~~le~g~~~d~~g~~~~~ 804 (982)
|. |+|. .....+.+..++..+||+||||+|.+.- ++.|+||.-||.-. ..
T Consensus 189 ----Ge---hVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~--en------- 252 (368)
T COG1223 189 ----GE---HVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIK--EN------- 252 (368)
T ss_pred ----HH---HhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcc--cC-------
Confidence 32 3332 2334577778888899999999998753 48899999998422 12
Q ss_pred ccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHHHHH
Q 002012 805 TNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVK 884 (982)
Q Consensus 805 ~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~~ 884 (982)
..++.|++||...- ++|++.+||..-|.|.-++.++..+|++.++++
T Consensus 253 eGVvtIaaTN~p~~-------------------------------LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~-- 299 (368)
T COG1223 253 EGVVTIAATNRPEL-------------------------------LDPAIRSRFEEEIEFKLPNDEERLEILEYYAKK-- 299 (368)
T ss_pred CceEEEeecCChhh-------------------------------cCHHHHhhhhheeeeeCCChHHHHHHHHHHHHh--
Confidence 23789999997542 788999999999999999999999999999887
Q ss_pred HHHHhCCCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHcC
Q 002012 885 DRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAILKG 937 (982)
Q Consensus 885 ~~~~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~l~~~la~~~l~~ 937 (982)
.. +.++.. +++|+.. ...++.|++ .++.+..+|-+++..+
T Consensus 300 -----~P--lpv~~~-~~~~~~~--t~g~SgRdi---kekvlK~aLh~Ai~ed 339 (368)
T COG1223 300 -----FP--LPVDAD-LRYLAAK--TKGMSGRDI---KEKVLKTALHRAIAED 339 (368)
T ss_pred -----CC--CccccC-HHHHHHH--hCCCCchhH---HHHHHHHHHHHHHHhc
Confidence 22 334433 5666664 234555765 4455666777777765
No 87
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.74 E-value=5.9e-17 Score=191.92 Aligned_cols=228 Identities=19% Similarity=0.276 Sum_probs=176.7
Q ss_pred cccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEecccccccccccccc
Q 002012 663 KRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRLV 742 (982)
Q Consensus 663 ~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l~ 742 (982)
..++|.+.++..+...+..... ...++++.|++||||+.+|++++......+.+|+.+||+.+........++
T Consensus 138 ~~lig~s~~~~~l~~~~~~~~~-------~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~~~~lf 210 (469)
T PRK10923 138 TDIIGEAPAMQDVFRIIGRLSR-------SSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELF 210 (469)
T ss_pred ccceecCHHHHHHHHHHHHHhc-------cCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHHHHHhc
Confidence 3578888888888877765421 122499999999999999999999987778899999999986554456688
Q ss_pred CCCCC-ccccccCCchhHHHhhCCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCChHHHH
Q 002012 743 GAPPG-YVGYEEGGQLTEVVRRRPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYIL 821 (982)
Q Consensus 743 g~~~g-~vg~~~~~~l~~~l~~~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~i~ 821 (982)
|...| +.|.... -.+.+..+.++.||||||+.+++..|..|+++++++.+....|......++.||+||+.......
T Consensus 211 g~~~g~~~~~~~~--~~g~~~~a~~Gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~ 288 (469)
T PRK10923 211 GHEKGAFTGANTI--RQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRV 288 (469)
T ss_pred CCCCCCCCCCCcC--CCCCeeECCCCEEEEeccccCCHHHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCHHHHH
Confidence 87665 3333221 12345567788999999999999999999999999998876555444568999999998765433
Q ss_pred HhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccc-cccccCCCCh--hHHHHHHHHHHHHHHHHHHhCCCCccCCH
Q 002012 822 ETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRID-EYIVFQPLDS--KEISKIVEIQMNRVKDRLKQKKIDLHYTK 898 (982)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid-~ii~F~pl~~--~~l~~il~~~l~~~~~~~~~~~~~l~i~~ 898 (982)
. .+.|+++|++|+. ..|..|||.+ +|+..+++.+++++...+... ...+++
T Consensus 289 ~------------------------~~~~~~~L~~~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~--~~~~~~ 342 (469)
T PRK10923 289 Q------------------------EGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVE--AKLLHP 342 (469)
T ss_pred H------------------------cCCchHHHHHHhcceeecCCCcccchhhHHHHHHHHHHHHHHHcCCC--CCCcCH
Confidence 3 1458899999995 4788889876 799999999998865543221 246999
Q ss_pred HHHHHHHhcCCCCCCCchHHHHHHHHHHH
Q 002012 899 EAVTLLGILGFDPNFGARPVKRVIQQLVE 927 (982)
Q Consensus 899 ~a~~~L~~~~~~~~~gaR~L~~~i~~~l~ 927 (982)
++++.|..+.|++|+ |+|+++|++++.
T Consensus 343 ~a~~~L~~~~wpgNv--~eL~~~i~~~~~ 369 (469)
T PRK10923 343 ETEAALTRLAWPGNV--RQLENTCRWLTV 369 (469)
T ss_pred HHHHHHHhCCCCChH--HHHHHHHHHHHH
Confidence 999999999999877 899999998654
No 88
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.74 E-value=8e-17 Score=190.88 Aligned_cols=200 Identities=25% Similarity=0.364 Sum_probs=149.9
Q ss_pred cCCCCCcccchHHHHHHHHHhc------------cCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEe
Q 002012 265 SGKLDPVIGRDDEIRRCIQILS------------RRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLD 332 (982)
Q Consensus 265 ~~~l~~liG~~~~i~~l~~~L~------------~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~ 332 (982)
.-+|++++|.++....+.+++. ...+.++||+||||||||++|+++|... +.+++.++
T Consensus 51 ~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~----------~~~~~~i~ 120 (495)
T TIGR01241 51 KVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA----------GVPFFSIS 120 (495)
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc----------CCCeeecc
Confidence 4478889998876555444332 2345689999999999999999999987 78899998
Q ss_pred cccccccccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCC---ch---hhHHHHHHhhhc----CCCeEEE
Q 002012 333 MASLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQS---GA---MDASNMLKPMLG----RGELRCI 402 (982)
Q Consensus 333 ~~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~---~~---~~~~~~L~~~le----~g~i~vI 402 (982)
.+.+.. .+.|..+..++.+|..+.. ..|+||||||||.+...++.. +. ....+.|+..++ ++.+.+|
T Consensus 121 ~~~~~~--~~~g~~~~~l~~~f~~a~~-~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI 197 (495)
T TIGR01241 121 GSDFVE--MFVGVGASRVRDLFEQAKK-NAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVI 197 (495)
T ss_pred HHHHHH--HHhcccHHHHHHHHHHHHh-cCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEE
Confidence 877763 4677788889999998876 567899999999998765431 11 233444444443 5679999
Q ss_pred EecCchhHhhhhhcChHHHh--ccc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCCcc
Q 002012 403 GATTLNEYRNYIEKDPALER--RFQ-QVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLPD 479 (982)
Q Consensus 403 ~at~~~~~~~~~~~d~al~r--Rf~-~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~p~ 479 (982)
+|||.++ .+||++.| ||+ .|+++.|+.+++.+||+.+.... ... ++..+..++..+ ..+.+.
T Consensus 198 ~aTn~~~-----~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~----~~~-~~~~l~~la~~t-----~G~sga 262 (495)
T TIGR01241 198 AATNRPD-----VLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNK----KLA-PDVDLKAVARRT-----PGFSGA 262 (495)
T ss_pred EecCChh-----hcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcC----CCC-cchhHHHHHHhC-----CCCCHH
Confidence 9999998 79999998 897 89999999999999998876652 111 233455666664 345678
Q ss_pred hhhHHHHHHHHHh
Q 002012 480 KAIDLVDEAAAKL 492 (982)
Q Consensus 480 ~a~~lld~a~~~~ 492 (982)
+...++.+|+..+
T Consensus 263 dl~~l~~eA~~~a 275 (495)
T TIGR01241 263 DLANLLNEAALLA 275 (495)
T ss_pred HHHHHHHHHHHHH
Confidence 8899999886554
No 89
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.73 E-value=3.2e-16 Score=185.66 Aligned_cols=203 Identities=22% Similarity=0.223 Sum_probs=157.2
Q ss_pred hhHHHhhcCCCCCcccchHHHHHHHHHhccCCCCCc-EEeCCCCCcHHHHHHHHHHHhhcCCCCC---------------
Q 002012 258 DLTELARSGKLDPVIGRDDEIRRCIQILSRRTKNNP-VIIGEPGVGKTAIAEGLAQRIVRGDVPE--------------- 321 (982)
Q Consensus 258 ~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~i-LL~GppGvGKT~la~~la~~l~~~~~p~--------------- 321 (982)
-|.++|||.+|+++||+++.++.+.+.+......|. ||+||+|||||++|+.+|+.+.+.....
T Consensus 5 vla~KyRP~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C 84 (618)
T PRK14951 5 VLARKYRPRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQAC 84 (618)
T ss_pred HHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHH
Confidence 488999999999999999999999999988777776 8999999999999999999997632100
Q ss_pred ----CCCCCeEEEEecccccccccccccHHHHHHHHHHHHHhc---CCCeEEEEccchhhhhCCCCCchhhHHHHHHhhh
Q 002012 322 ----TLQNRKLISLDMASLVAGTCYRGDFEKRLKAVLKEVTKS---NGQIILFIDELHTIIGAGNQSGAMDASNMLKPML 394 (982)
Q Consensus 322 ----~l~~~~v~~l~~~~l~~~~~~~g~~e~~l~~l~~~~~~~---~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~l 394 (982)
......++.+|.++ ..| .+.++++++.+... ++..|+||||+|+|. .+.+|.|+..+
T Consensus 85 ~~i~~g~h~D~~eldaas------~~~--Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls--------~~a~NaLLKtL 148 (618)
T PRK14951 85 RDIDSGRFVDYTELDAAS------NRG--VDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLT--------NTAFNAMLKTL 148 (618)
T ss_pred HHHHcCCCCceeecCccc------ccC--HHHHHHHHHHHHhCcccCCceEEEEEChhhCC--------HHHHHHHHHhc
Confidence 00112344444321 111 23355666554421 345699999999996 55678888888
Q ss_pred cC--CCeEEEEecCchhHhhhhhcChHHHhccceEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhh
Q 002012 395 GR--GELRCIGATTLNEYRNYIEKDPALERRFQQVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYI 472 (982)
Q Consensus 395 e~--g~i~vI~at~~~~~~~~~~~d~al~rRf~~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i 472 (982)
+. +.+.+|++||... .+.+.+++||..+.|..++.+++...|+.+..+ .|+.++++++..++..+++-
T Consensus 149 EEPP~~~~fIL~Ttd~~-----kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~----egi~ie~~AL~~La~~s~Gs- 218 (618)
T PRK14951 149 EEPPEYLKFVLATTDPQ-----KVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAA----ENVPAEPQALRLLARAARGS- 218 (618)
T ss_pred ccCCCCeEEEEEECCch-----hhhHHHHHhceeeecCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC-
Confidence 85 6788999888766 567889999999999999999999999887776 58999999999999998754
Q ss_pred ccCCCcchhhHHHHHHHHH
Q 002012 473 TERFLPDKAIDLVDEAAAK 491 (982)
Q Consensus 473 ~~~~~p~~a~~lld~a~~~ 491 (982)
++++.+++|.++++
T Consensus 219 -----lR~al~lLdq~ia~ 232 (618)
T PRK14951 219 -----MRDALSLTDQAIAF 232 (618)
T ss_pred -----HHHHHHHHHHHHHh
Confidence 48889999988865
No 90
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.73 E-value=1.1e-16 Score=189.22 Aligned_cols=202 Identities=20% Similarity=0.228 Sum_probs=158.2
Q ss_pred hHHHhhcCCCCCcccchHHHHHHHHHhccCCCCC-cEEeCCCCCcHHHHHHHHHHHhhcCCCCCC---------------
Q 002012 259 LTELARSGKLDPVIGRDDEIRRCIQILSRRTKNN-PVIIGEPGVGKTAIAEGLAQRIVRGDVPET--------------- 322 (982)
Q Consensus 259 l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~-iLL~GppGvGKT~la~~la~~l~~~~~p~~--------------- 322 (982)
|.++|||.+|+++||+++.++.+.+.+......| +||+||+||||||+|+.+|+.+.+...+..
T Consensus 3 l~~kyRP~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~ 82 (584)
T PRK14952 3 LYRKYRPATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPN 82 (584)
T ss_pred HHHHhCCCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcc
Confidence 6789999999999999999999999998888888 489999999999999999999875432210
Q ss_pred -CCCCeEEEEecccccccccccccHHHHHHHHHHHHHh---cCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcC--
Q 002012 323 -LQNRKLISLDMASLVAGTCYRGDFEKRLKAVLKEVTK---SNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGR-- 396 (982)
Q Consensus 323 -l~~~~v~~l~~~~l~~~~~~~g~~e~~l~~l~~~~~~---~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~-- 396 (982)
.....++++|.++. .| .+.++++.+.+.. .+...|+||||+|+|. ..++|.|+..|+.
T Consensus 83 ~~~~~dvieidaas~------~g--vd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt--------~~A~NALLK~LEEpp 146 (584)
T PRK14952 83 GPGSIDVVELDAASH------GG--VDDTRELRDRAFYAPAQSRYRIFIVDEAHMVT--------TAGFNALLKIVEEPP 146 (584)
T ss_pred cCCCceEEEeccccc------cC--HHHHHHHHHHHHhhhhcCCceEEEEECCCcCC--------HHHHHHHHHHHhcCC
Confidence 11234555553221 11 2234444444432 2345699999999996 5678889999985
Q ss_pred CCeEEEEecCchhHhhhhhcChHHHhccceEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCC
Q 002012 397 GELRCIGATTLNEYRNYIEKDPALERRFQQVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERF 476 (982)
Q Consensus 397 g~i~vI~at~~~~~~~~~~~d~al~rRf~~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~ 476 (982)
+.+.+|++||... .+.+++++||+.+.|..++.+++.+.|..++++ .++.++++++..++..+++-
T Consensus 147 ~~~~fIL~tte~~-----kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~----egi~i~~~al~~Ia~~s~Gd----- 212 (584)
T PRK14952 147 EHLIFIFATTEPE-----KVLPTIRSRTHHYPFRLLPPRTMRALIARICEQ----EGVVVDDAVYPLVIRAGGGS----- 212 (584)
T ss_pred CCeEEEEEeCChH-----hhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC-----
Confidence 7899999998876 788999999999999999999999999888876 58899999999999987743
Q ss_pred CcchhhHHHHHHHHH
Q 002012 477 LPDKAIDLVDEAAAK 491 (982)
Q Consensus 477 ~p~~a~~lld~a~~~ 491 (982)
+++++.++|..++.
T Consensus 213 -lR~aln~Ldql~~~ 226 (584)
T PRK14952 213 -PRDTLSVLDQLLAG 226 (584)
T ss_pred -HHHHHHHHHHHHhc
Confidence 47899999988765
No 91
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.73 E-value=9.2e-17 Score=182.71 Aligned_cols=204 Identities=23% Similarity=0.209 Sum_probs=153.9
Q ss_pred hhhHHHhhcCCCCCcccchHHHHHHHHHhccCCCCCc-EEeCCCCCcHHHHHHHHHHHhhcCCCCCCC------------
Q 002012 257 NDLTELARSGKLDPVIGRDDEIRRCIQILSRRTKNNP-VIIGEPGVGKTAIAEGLAQRIVRGDVPETL------------ 323 (982)
Q Consensus 257 ~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~i-LL~GppGvGKT~la~~la~~l~~~~~p~~l------------ 323 (982)
.+|.+++||.+|+++||+++.++.+.+.+..+..+|. ||+||||+||||+|+.+|+.+.+...+...
T Consensus 4 ~~l~~kyrP~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~ 83 (363)
T PRK14961 4 QILARKWRPQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIE 83 (363)
T ss_pred HHHHHHhCCCchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHh
Confidence 4689999999999999999999999998887666675 899999999999999999998642211100
Q ss_pred --CCCeEEEEecccccccccccccHHHHHHHHHHHHHhc---CCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcC--
Q 002012 324 --QNRKLISLDMASLVAGTCYRGDFEKRLKAVLKEVTKS---NGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGR-- 396 (982)
Q Consensus 324 --~~~~v~~l~~~~l~~~~~~~g~~e~~l~~l~~~~~~~---~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~-- 396 (982)
....++.++.++- ...+.++.+++.+... +...|+||||+|.+. ..+++.|+..++.
T Consensus 84 ~~~~~d~~~~~~~~~--------~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~--------~~a~naLLk~lEe~~ 147 (363)
T PRK14961 84 KGLCLDLIEIDAASR--------TKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLS--------RHSFNALLKTLEEPP 147 (363)
T ss_pred cCCCCceEEeccccc--------CCHHHHHHHHHHHhcCcccCCceEEEEEChhhcC--------HHHHHHHHHHHhcCC
Confidence 0113344432210 1123355555554321 234599999999985 4566778888874
Q ss_pred CCeEEEEecCchhHhhhhhcChHHHhccceEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCC
Q 002012 397 GELRCIGATTLNEYRNYIEKDPALERRFQQVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERF 476 (982)
Q Consensus 397 g~i~vI~at~~~~~~~~~~~d~al~rRf~~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~ 476 (982)
+.+.+|++|+... .+.+++.+||..+.+.+|+.+++..+|+...+. .++.++++++..++..+++
T Consensus 148 ~~~~fIl~t~~~~-----~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~----~g~~i~~~al~~ia~~s~G------ 212 (363)
T PRK14961 148 QHIKFILATTDVE-----KIPKTILSRCLQFKLKIISEEKIFNFLKYILIK----ESIDTDEYALKLIAYHAHG------ 212 (363)
T ss_pred CCeEEEEEcCChH-----hhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCC------
Confidence 6788888887765 578999999999999999999999999888776 5788999999999998764
Q ss_pred CcchhhHHHHHHHHH
Q 002012 477 LPDKAIDLVDEAAAK 491 (982)
Q Consensus 477 ~p~~a~~lld~a~~~ 491 (982)
.++++..+++.+++.
T Consensus 213 ~~R~al~~l~~~~~~ 227 (363)
T PRK14961 213 SMRDALNLLEHAINL 227 (363)
T ss_pred CHHHHHHHHHHHHHh
Confidence 357899999888764
No 92
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.73 E-value=5.1e-17 Score=185.87 Aligned_cols=203 Identities=21% Similarity=0.314 Sum_probs=152.6
Q ss_pred HhhcCCCCCcccchHHHHHHHHHhcc-------------CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeE
Q 002012 262 LARSGKLDPVIGRDDEIRRCIQILSR-------------RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKL 328 (982)
Q Consensus 262 ~~~~~~l~~liG~~~~i~~l~~~L~~-------------~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v 328 (982)
..++.+++++.|.++.++.+.+++.- ..+.++||+||||||||++|+++|..+ +..+
T Consensus 176 ~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el----------~~~f 245 (438)
T PTZ00361 176 KAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANET----------SATF 245 (438)
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhh----------CCCE
Confidence 44556788899999988877765521 356689999999999999999999987 6778
Q ss_pred EEEecccccccccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCC---CCchhhHHHHHHhhh-------cCCC
Q 002012 329 ISLDMASLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGN---QSGAMDASNMLKPML-------GRGE 398 (982)
Q Consensus 329 ~~l~~~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~---~~~~~~~~~~L~~~l-------e~g~ 398 (982)
+.+..+.+.. +|.|+.+..++.+|..+.. +.++||||||||.+...+. +++..++...+..++ ..++
T Consensus 246 i~V~~seL~~--k~~Ge~~~~vr~lF~~A~~-~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~ 322 (438)
T PTZ00361 246 LRVVGSELIQ--KYLGDGPKLVRELFRVAEE-NAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGD 322 (438)
T ss_pred EEEecchhhh--hhcchHHHHHHHHHHHHHh-CCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCC
Confidence 8888777763 5888888889999988776 5688999999999986543 233344444444433 2568
Q ss_pred eEEEEecCchhHhhhhhcChHHHh--ccc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccChH-HHHHHHHHhhhhhcc
Q 002012 399 LRCIGATTLNEYRNYIEKDPALER--RFQ-QVFCDQPSVENTISILRGLRERYELHHGVKISDS-ALVSAAVLADRYITE 474 (982)
Q Consensus 399 i~vI~at~~~~~~~~~~~d~al~r--Rf~-~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~-~l~~~~~~s~r~i~~ 474 (982)
+.+|+|||..+ .+|+++.| ||+ .|+|+.|+.+++..||+....++. +.++ .+..++..+ .
T Consensus 323 V~VI~ATNr~d-----~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~------l~~dvdl~~la~~t-----~ 386 (438)
T PTZ00361 323 VKVIMATNRIE-----SLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMT------LAEDVDLEEFIMAK-----D 386 (438)
T ss_pred eEEEEecCChH-----HhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCC------CCcCcCHHHHHHhc-----C
Confidence 99999999988 78999987 897 999999999999999997766532 2222 244555553 3
Q ss_pred CCCcchhhHHHHHHHHHhh
Q 002012 475 RFLPDKAIDLVDEAAAKLK 493 (982)
Q Consensus 475 ~~~p~~a~~lld~a~~~~~ 493 (982)
.+.+++...++.+|+..+.
T Consensus 387 g~sgAdI~~i~~eA~~~Al 405 (438)
T PTZ00361 387 ELSGADIKAICTEAGLLAL 405 (438)
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 4556778888888876543
No 93
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.73 E-value=2.1e-16 Score=193.54 Aligned_cols=203 Identities=20% Similarity=0.189 Sum_probs=156.4
Q ss_pred hhHHHhhcCCCCCcccchHHHHHHHHHhccCCCCC-cEEeCCCCCcHHHHHHHHHHHhhcCCCCCCC-------------
Q 002012 258 DLTELARSGKLDPVIGRDDEIRRCIQILSRRTKNN-PVIIGEPGVGKTAIAEGLAQRIVRGDVPETL------------- 323 (982)
Q Consensus 258 ~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~-iLL~GppGvGKT~la~~la~~l~~~~~p~~l------------- 323 (982)
.|.++|||.+|++|||+++.++.+...+......| +||+||+|||||++|+.||+.|.+...+...
T Consensus 4 ~l~~KyRP~~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~ 83 (824)
T PRK07764 4 ALYRRYRPATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAP 83 (824)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHc
Confidence 47799999999999999999999999998877778 5899999999999999999999764321110
Q ss_pred ---CCCeEEEEecccccccccccccHHHHHHHHHHHHH---hcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcC-
Q 002012 324 ---QNRKLISLDMASLVAGTCYRGDFEKRLKAVLKEVT---KSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGR- 396 (982)
Q Consensus 324 ---~~~~v~~l~~~~l~~~~~~~g~~e~~l~~l~~~~~---~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~- 396 (982)
....++.+|..+.. | .+.++.+.+.+. ..+...|+||||+|+|. .+.+|.|+.+|++
T Consensus 84 g~~~~~dv~eidaas~~------~--Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt--------~~a~NaLLK~LEEp 147 (824)
T PRK07764 84 GGPGSLDVTEIDAASHG------G--VDDARELRERAFFAPAESRYKIFIIDEAHMVT--------PQGFNALLKIVEEP 147 (824)
T ss_pred CCCCCCcEEEecccccC------C--HHHHHHHHHHHHhchhcCCceEEEEechhhcC--------HHHHHHHHHHHhCC
Confidence 12334555432211 1 223344443332 12455699999999997 5778999999985
Q ss_pred -CCeEEEEecCchhHhhhhhcChHHHhccceEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccC
Q 002012 397 -GELRCIGATTLNEYRNYIEKDPALERRFQQVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITER 475 (982)
Q Consensus 397 -g~i~vI~at~~~~~~~~~~~d~al~rRf~~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~ 475 (982)
..++||++|+..+ .+.+.+++||+.+.|..++.+++..+|+.++.. .++.++++++..++..+.+.
T Consensus 148 P~~~~fIl~tt~~~-----kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~----EGv~id~eal~lLa~~sgGd---- 214 (824)
T PRK07764 148 PEHLKFIFATTEPD-----KVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQ----EGVPVEPGVLPLVIRAGGGS---- 214 (824)
T ss_pred CCCeEEEEEeCChh-----hhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC----
Confidence 7889999998776 578899999999999999999999999887776 58899999999999997743
Q ss_pred CCcchhhHHHHHHHHH
Q 002012 476 FLPDKAIDLVDEAAAK 491 (982)
Q Consensus 476 ~~p~~a~~lld~a~~~ 491 (982)
..++..+||+.++.
T Consensus 215 --lR~Al~eLEKLia~ 228 (824)
T PRK07764 215 --VRDSLSVLDQLLAG 228 (824)
T ss_pred --HHHHHHHHHHHHhh
Confidence 36788888887654
No 94
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.72 E-value=8.3e-17 Score=186.39 Aligned_cols=180 Identities=21% Similarity=0.346 Sum_probs=133.3
Q ss_pred HHhhcCCCCCcccchHHHHHHHHHhc-------------cCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCe
Q 002012 261 ELARSGKLDPVIGRDDEIRRCIQILS-------------RRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRK 327 (982)
Q Consensus 261 ~~~~~~~l~~liG~~~~i~~l~~~L~-------------~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~ 327 (982)
+..++-+++++.|.++.++.+.+.+. -..++++||+||||||||++|+++|+.+.............
T Consensus 174 ~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~ 253 (512)
T TIGR03689 174 EEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSY 253 (512)
T ss_pred ecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCcee
Confidence 34455678899999998888777542 13567899999999999999999999884321100111223
Q ss_pred EEEEecccccccccccccHHHHHHHHHHHHHhc---CCCeEEEEccchhhhhCCCCCchh----hHHHHHHhhhc----C
Q 002012 328 LISLDMASLVAGTCYRGDFEKRLKAVLKEVTKS---NGQIILFIDELHTIIGAGNQSGAM----DASNMLKPMLG----R 396 (982)
Q Consensus 328 v~~l~~~~l~~~~~~~g~~e~~l~~l~~~~~~~---~~~~IL~IDEi~~l~~~~~~~~~~----~~~~~L~~~le----~ 396 (982)
++.+..+.+. .+|.|+.+..++.+|..+... +.++||||||+|.++..+....+. .+.+.|+..++ .
T Consensus 254 fl~v~~~eLl--~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~ 331 (512)
T TIGR03689 254 FLNIKGPELL--NKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESL 331 (512)
T ss_pred EEeccchhhc--ccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccC
Confidence 3444445555 458899999999999887752 468999999999998765433222 23445555554 4
Q ss_pred CCeEEEEecCchhHhhhhhcChHHHh--ccc-eEEecCCCHHHHHHHHHHHHHH
Q 002012 397 GELRCIGATTLNEYRNYIEKDPALER--RFQ-QVFCDQPSVENTISILRGLRER 447 (982)
Q Consensus 397 g~i~vI~at~~~~~~~~~~~d~al~r--Rf~-~i~i~~Ps~~e~~~IL~~~~~~ 447 (982)
+++.+|+|||.++ .+||++.| ||+ .|+|+.|+.+++.+||+.+...
T Consensus 332 ~~ViVI~ATN~~d-----~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 332 DNVIVIGASNRED-----MIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred CceEEEeccCChh-----hCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 6899999999998 79999999 997 8999999999999999877654
No 95
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.72 E-value=1.7e-15 Score=189.55 Aligned_cols=181 Identities=22% Similarity=0.296 Sum_probs=126.5
Q ss_pred CCcccchHHHHHHHHHhccC---------CCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEeccccccc
Q 002012 269 DPVIGRDDEIRRCIQILSRR---------TKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAG 339 (982)
Q Consensus 269 ~~liG~~~~i~~l~~~L~~~---------~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~ 339 (982)
..++|++..++.+...+.+. +...++|+||||||||++|++||+.+... +..++.+||+.+...
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~-------~~~~i~~d~s~~~~~ 637 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDD-------EDAMVRIDMSEYMEK 637 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCC-------CCcEEEEechhhccc
Confidence 45999999999999887651 23458899999999999999999988432 568888888765421
Q ss_pred ----------ccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCCC-----------
Q 002012 340 ----------TCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRGE----------- 398 (982)
Q Consensus 340 ----------~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g~----------- 398 (982)
..|.|..+. ..+...+. ..+..|||||||+.+. .++++.|+++++.|.
T Consensus 638 ~~~~~l~g~~~g~~g~~~~--g~l~~~v~-~~p~~vlllDeieka~--------~~v~~~Ll~~l~~g~l~d~~g~~vd~ 706 (852)
T TIGR03346 638 HSVARLIGAPPGYVGYEEG--GQLTEAVR-RKPYSVVLFDEVEKAH--------PDVFNVLLQVLDDGRLTDGQGRTVDF 706 (852)
T ss_pred chHHHhcCCCCCccCcccc--cHHHHHHH-cCCCcEEEEeccccCC--------HHHHHHHHHHHhcCceecCCCeEEec
Confidence 123332221 12222333 3566799999999886 788999999997653
Q ss_pred --eEEEEecCchhH--hh------------------hhhcChHHHhccc-eEEecCCCHHHHHHHHHHHHHHHhh---hc
Q 002012 399 --LRCIGATTLNEY--RN------------------YIEKDPALERRFQ-QVFCDQPSVENTISILRGLRERYEL---HH 452 (982)
Q Consensus 399 --i~vI~at~~~~~--~~------------------~~~~d~al~rRf~-~i~i~~Ps~~e~~~IL~~~~~~~~~---~~ 452 (982)
.++|+|||...- .+ .-...|.|..|++ .+.+.+++.+++..|+......... ..
T Consensus 707 rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~ 786 (852)
T TIGR03346 707 RNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKRLAER 786 (852)
T ss_pred CCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHHC
Confidence 358888887210 00 1124688999997 5566666899999998765554332 22
Q ss_pred --CCccChHHHHHHHHH
Q 002012 453 --GVKISDSALVSAAVL 467 (982)
Q Consensus 453 --~v~i~~~~l~~~~~~ 467 (982)
.+.++++++..++..
T Consensus 787 ~~~l~i~~~a~~~L~~~ 803 (852)
T TIGR03346 787 KITLELSDAALDFLAEA 803 (852)
T ss_pred CCeecCCHHHHHHHHHh
Confidence 367899999998886
No 96
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=7.2e-17 Score=189.91 Aligned_cols=201 Identities=27% Similarity=0.364 Sum_probs=154.7
Q ss_pred CCCCCcccchH---HHHHHHHHhcc---------CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEec
Q 002012 266 GKLDPVIGRDD---EIRRCIQILSR---------RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDM 333 (982)
Q Consensus 266 ~~l~~liG~~~---~i~~l~~~L~~---------~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~ 333 (982)
-+|.||-|.++ ||..+++.|.. +-++.+||+||||||||.||+++|.+. +.++++++.
T Consensus 308 V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA----------gVPF~svSG 377 (774)
T KOG0731|consen 308 VKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFSVSG 377 (774)
T ss_pred CccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc----------CCceeeech
Confidence 47999999988 55566665543 467899999999999999999999987 999999999
Q ss_pred ccccccccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCC---C-Cchhh---HHHHHHhhhc----CCCeEEE
Q 002012 334 ASLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGN---Q-SGAMD---ASNMLKPMLG----RGELRCI 402 (982)
Q Consensus 334 ~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~---~-~~~~~---~~~~L~~~le----~g~i~vI 402 (982)
++++.. +.|.-..+++++|..++. +.|+|+||||||.+...+. . .+..+ ..|.|+.-|+ .+.++++
T Consensus 378 SEFvE~--~~g~~asrvr~lf~~ar~-~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~ 454 (774)
T KOG0731|consen 378 SEFVEM--FVGVGASRVRDLFPLARK-NAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVL 454 (774)
T ss_pred HHHHHH--hcccchHHHHHHHHHhhc-cCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEE
Confidence 999854 566668899999999886 7899999999999987663 1 22333 3444555444 4679999
Q ss_pred EecCchhHhhhhhcChHHHh--ccc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCCcc
Q 002012 403 GATTLNEYRNYIEKDPALER--RFQ-QVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLPD 479 (982)
Q Consensus 403 ~at~~~~~~~~~~~d~al~r--Rf~-~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~p~ 479 (982)
++||.++ .+|++|+| ||+ .|.++.|+...+.+|++-..... ....++..+..++.+ +..+.++
T Consensus 455 a~tnr~d-----~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~----~~~~e~~dl~~~a~~-----t~gf~ga 520 (774)
T KOG0731|consen 455 AATNRPD-----ILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKK----KLDDEDVDLSKLASL-----TPGFSGA 520 (774)
T ss_pred eccCCcc-----ccCHHhcCCCccccceeccCCchhhhHHHHHHHhhcc----CCCcchhhHHHHHhc-----CCCCcHH
Confidence 9999999 89999999 997 99999999999999998666542 222223333334444 5667788
Q ss_pred hhhHHHHHHHHHhh
Q 002012 480 KAIDLVDEAAAKLK 493 (982)
Q Consensus 480 ~a~~lld~a~~~~~ 493 (982)
+..+++.+|+..+.
T Consensus 521 dl~n~~neaa~~a~ 534 (774)
T KOG0731|consen 521 DLANLCNEAALLAA 534 (774)
T ss_pred HHHhhhhHHHHHHH
Confidence 88888888876544
No 97
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.72 E-value=2e-16 Score=196.00 Aligned_cols=198 Identities=21% Similarity=0.316 Sum_probs=152.9
Q ss_pred CCCCCcccchHHHHHHHHHhc-------------cCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEe
Q 002012 266 GKLDPVIGRDDEIRRCIQILS-------------RRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLD 332 (982)
Q Consensus 266 ~~l~~liG~~~~i~~l~~~L~-------------~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~ 332 (982)
-.++++.|.++..+.+.+.+. -..+.++||+||||||||++|+++|..+ +.+++.++
T Consensus 450 ~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~----------~~~fi~v~ 519 (733)
T TIGR01243 450 VRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATES----------GANFIAVR 519 (733)
T ss_pred cchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc----------CCCEEEEe
Confidence 367888998887666665442 1356679999999999999999999988 88999999
Q ss_pred cccccccccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCc----hhhHHHHHHhhhc----CCCeEEEEe
Q 002012 333 MASLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSG----AMDASNMLKPMLG----RGELRCIGA 404 (982)
Q Consensus 333 ~~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~----~~~~~~~L~~~le----~g~i~vI~a 404 (982)
.+++.+ +|.|+.+..++.+|..+.. ..++||||||||.+.+.++... ...+.+.|+..++ ..++.+|+|
T Consensus 520 ~~~l~~--~~vGese~~i~~~f~~A~~-~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~a 596 (733)
T TIGR01243 520 GPEILS--KWVGESEKAIREIFRKARQ-AAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAA 596 (733)
T ss_pred hHHHhh--cccCcHHHHHHHHHHHHHh-cCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEe
Confidence 888874 5899999999999999886 5688999999999987654322 2334555555553 568999999
Q ss_pred cCchhHhhhhhcChHHHh--ccc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccC-hHHHHHHHHHhhhhhccCCCcch
Q 002012 405 TTLNEYRNYIEKDPALER--RFQ-QVFCDQPSVENTISILRGLRERYELHHGVKIS-DSALVSAAVLADRYITERFLPDK 480 (982)
Q Consensus 405 t~~~~~~~~~~~d~al~r--Rf~-~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~-~~~l~~~~~~s~r~i~~~~~p~~ 480 (982)
||.++ .+||++.| ||+ .|+++.|+.+++.+||+....+ ..++ +..+..++..+. ++.+.+
T Consensus 597 Tn~~~-----~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~------~~~~~~~~l~~la~~t~-----g~sgad 660 (733)
T TIGR01243 597 TNRPD-----ILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRS------MPLAEDVDLEELAEMTE-----GYTGAD 660 (733)
T ss_pred CCChh-----hCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcC------CCCCccCCHHHHHHHcC-----CCCHHH
Confidence 99998 79999998 997 8999999999999999865443 2232 223566777654 455677
Q ss_pred hhHHHHHHHHHh
Q 002012 481 AIDLVDEAAAKL 492 (982)
Q Consensus 481 a~~lld~a~~~~ 492 (982)
...++.+|+..+
T Consensus 661 i~~~~~~A~~~a 672 (733)
T TIGR01243 661 IEAVCREAAMAA 672 (733)
T ss_pred HHHHHHHHHHHH
Confidence 777777777543
No 98
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=2.4e-16 Score=187.53 Aligned_cols=183 Identities=26% Similarity=0.374 Sum_probs=146.6
Q ss_pred CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccccccccccHHHHHHHHHHHHHhcCCCeEEE
Q 002012 288 RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILF 367 (982)
Q Consensus 288 ~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~ 367 (982)
+....+||+||||||||++|+++|... +.+++.++.+++. .+|.|+.+..++.+|..++. ..++|||
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~~~----------~~~fi~v~~~~l~--sk~vGesek~ir~~F~~A~~-~~p~iiF 340 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVALES----------RSRFISVKGSELL--SKWVGESEKNIRELFEKARK-LAPSIIF 340 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHhhC----------CCeEEEeeCHHHh--ccccchHHHHHHHHHHHHHc-CCCcEEE
Confidence 455689999999999999999999987 8999999999888 56999999999999999986 6788999
Q ss_pred EccchhhhhCCCCCch---hhHHHHHHhhhc----CCCeEEEEecCchhHhhhhhcChHHHh--ccc-eEEecCCCHHHH
Q 002012 368 IDELHTIIGAGNQSGA---MDASNMLKPMLG----RGELRCIGATTLNEYRNYIEKDPALER--RFQ-QVFCDQPSVENT 437 (982)
Q Consensus 368 IDEi~~l~~~~~~~~~---~~~~~~L~~~le----~g~i~vI~at~~~~~~~~~~~d~al~r--Rf~-~i~i~~Ps~~e~ 437 (982)
|||+|.+...+..... ..+.+.|+..++ ...+.+|+|||.++ .+|+++.| ||+ .++|+.|+.+++
T Consensus 341 iDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~-----~ld~a~lR~gRfd~~i~v~~pd~~~r 415 (494)
T COG0464 341 IDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPD-----DLDPALLRPGRFDRLIYVPLPDLEER 415 (494)
T ss_pred EEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCcc-----ccCHhhcccCccceEeecCCCCHHHH
Confidence 9999999987654322 355566655553 45789999999999 79999999 997 999999999999
Q ss_pred HHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCCcchhhHHHHHHHHHhhhhc
Q 002012 438 ISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLPDKAIDLVDEAAAKLKMEI 496 (982)
Q Consensus 438 ~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~p~~a~~lld~a~~~~~~~~ 496 (982)
.+|++......... ...+-.+..++.. +.++...++..++.+|+.....+.
T Consensus 416 ~~i~~~~~~~~~~~---~~~~~~~~~l~~~-----t~~~sgadi~~i~~ea~~~~~~~~ 466 (494)
T COG0464 416 LEIFKIHLRDKKPP---LAEDVDLEELAEI-----TEGYSGADIAALVREAALEALREA 466 (494)
T ss_pred HHHHHHHhcccCCc---chhhhhHHHHHHH-----hcCCCHHHHHHHHHHHHHHHHHHh
Confidence 99998877753211 1234455566665 444667889999999887766544
No 99
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.72 E-value=2.2e-16 Score=183.92 Aligned_cols=205 Identities=20% Similarity=0.209 Sum_probs=158.6
Q ss_pred hhhHHHhhcCCCCCcccchHHHHHHHHHhccCC-CCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCC--------------
Q 002012 257 NDLTELARSGKLDPVIGRDDEIRRCIQILSRRT-KNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPE-------------- 321 (982)
Q Consensus 257 ~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~-~~~iLL~GppGvGKT~la~~la~~l~~~~~p~-------------- 321 (982)
.+|.+++||.+|+++||+++.++.+...+.... .+++||+|||||||||+|+.+|+.+.+.....
T Consensus 9 ~~la~kyRP~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C 88 (507)
T PRK06645 9 IPFARKYRPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNC 88 (507)
T ss_pred cchhhhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHH
Confidence 578999999999999999999999988666544 45788999999999999999999996532100
Q ss_pred ----CCCCCeEEEEecccccccccccccHHHHHHHHHHHHHhc---CCCeEEEEccchhhhhCCCCCchhhHHHHHHhhh
Q 002012 322 ----TLQNRKLISLDMASLVAGTCYRGDFEKRLKAVLKEVTKS---NGQIILFIDELHTIIGAGNQSGAMDASNMLKPML 394 (982)
Q Consensus 322 ----~l~~~~v~~l~~~~l~~~~~~~g~~e~~l~~l~~~~~~~---~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~l 394 (982)
......++++|.++ .. ....++.+++.+... +...|+||||+|.+. ....+.|+..+
T Consensus 89 ~~i~~~~h~Dv~eidaas------~~--~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls--------~~a~naLLk~L 152 (507)
T PRK06645 89 ISFNNHNHPDIIEIDAAS------KT--SVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLS--------KGAFNALLKTL 152 (507)
T ss_pred HHHhcCCCCcEEEeeccC------CC--CHHHHHHHHHHHHhccccCCcEEEEEEChhhcC--------HHHHHHHHHHH
Confidence 01123445555321 11 134456666665532 345699999999986 45677888888
Q ss_pred cC--CCeEEEEecCchhHhhhhhcChHHHhccceEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhh
Q 002012 395 GR--GELRCIGATTLNEYRNYIEKDPALERRFQQVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYI 472 (982)
Q Consensus 395 e~--g~i~vI~at~~~~~~~~~~~d~al~rRf~~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i 472 (982)
+. ..+.+|++|+... .+.+++++||+.+.+..++.+++..+++.++++ .++.++++++..++..+++.
T Consensus 153 Eepp~~~vfI~aTte~~-----kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~----egi~ie~eAL~~Ia~~s~Gs- 222 (507)
T PRK06645 153 EEPPPHIIFIFATTEVQ-----KIPATIISRCQRYDLRRLSFEEIFKLLEYITKQ----ENLKTDIEALRIIAYKSEGS- 222 (507)
T ss_pred hhcCCCEEEEEEeCChH-----HhhHHHHhcceEEEccCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC-
Confidence 74 6788888887766 578999999999999999999999999988876 68899999999999987744
Q ss_pred ccCCCcchhhHHHHHHHHHh
Q 002012 473 TERFLPDKAIDLVDEAAAKL 492 (982)
Q Consensus 473 ~~~~~p~~a~~lld~a~~~~ 492 (982)
++++.++++.+++..
T Consensus 223 -----lR~al~~Ldkai~~~ 237 (507)
T PRK06645 223 -----ARDAVSILDQAASMS 237 (507)
T ss_pred -----HHHHHHHHHHHHHhh
Confidence 488999999988664
No 100
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.71 E-value=7.2e-16 Score=181.26 Aligned_cols=202 Identities=21% Similarity=0.205 Sum_probs=152.3
Q ss_pred hhhHHHhhcCCCCCcccchHHHHHHHHHhccCC-CCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCC-------------
Q 002012 257 NDLTELARSGKLDPVIGRDDEIRRCIQILSRRT-KNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPET------------- 322 (982)
Q Consensus 257 ~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~-~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~------------- 322 (982)
.+|.+++||.+|+++||++..++.+.+.+.... .+++||+||+|||||++|+.+|+.+.+..-+..
T Consensus 4 ~~la~KyRP~sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~ 83 (624)
T PRK14959 4 ASLTARYRPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVT 83 (624)
T ss_pred chHHHHhCCCCHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHh
Confidence 368999999999999999999999998887654 567789999999999999999999975321110
Q ss_pred -CCCCeEEEEecccccccccccccHHHHHHHHHHHHH---hcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcC--
Q 002012 323 -LQNRKLISLDMASLVAGTCYRGDFEKRLKAVLKEVT---KSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGR-- 396 (982)
Q Consensus 323 -l~~~~v~~l~~~~l~~~~~~~g~~e~~l~~l~~~~~---~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~-- 396 (982)
.....+++++.+. ..+ .+.++.+.+.+. ..+...|+||||+|.|. .+.++.|+..++.
T Consensus 84 ~g~hpDv~eId~a~------~~~--Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt--------~~a~naLLk~LEEP~ 147 (624)
T PRK14959 84 QGMHVDVVEIDGAS------NRG--IDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLT--------REAFNALLKTLEEPP 147 (624)
T ss_pred cCCCCceEEEeccc------ccC--HHHHHHHHHHHHhhhhcCCceEEEEEChHhCC--------HHHHHHHHHHhhccC
Confidence 0122345554321 111 122333333322 22445699999999996 5667888999975
Q ss_pred CCeEEEEecCchhHhhhhhcChHHHhccceEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCC
Q 002012 397 GELRCIGATTLNEYRNYIEKDPALERRFQQVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERF 476 (982)
Q Consensus 397 g~i~vI~at~~~~~~~~~~~d~al~rRf~~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~ 476 (982)
+.+.+|++||... .+.+.+++||+.+.|..++.+++..+|+.++.+ .++.++++++..++.++.+.+
T Consensus 148 ~~~ifILaTt~~~-----kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~----egi~id~eal~lIA~~s~Gdl---- 214 (624)
T PRK14959 148 ARVTFVLATTEPH-----KFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGR----EGVDYDPAAVRLIARRAAGSV---- 214 (624)
T ss_pred CCEEEEEecCChh-----hhhHHHHhhhhccccCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH----
Confidence 6888999888766 567789999999999999999999999887766 578899999999999987543
Q ss_pred CcchhhHHHHHHH
Q 002012 477 LPDKAIDLVDEAA 489 (982)
Q Consensus 477 ~p~~a~~lld~a~ 489 (982)
++++++++.+.
T Consensus 215 --R~Al~lLeqll 225 (624)
T PRK14959 215 --RDSMSLLGQVL 225 (624)
T ss_pred --HHHHHHHHHHH
Confidence 78899998764
No 101
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.71 E-value=3.3e-16 Score=171.65 Aligned_cols=186 Identities=23% Similarity=0.273 Sum_probs=140.7
Q ss_pred CcccchHHHHHHHHHhc---------------cCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecc
Q 002012 270 PVIGRDDEIRRCIQILS---------------RRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMA 334 (982)
Q Consensus 270 ~liG~~~~i~~l~~~L~---------------~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~ 334 (982)
.++|.++..+++.++.. ..+..|++|+||||||||++|+++|+.+..... ....+++.++++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~---~~~~~~v~v~~~ 99 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGY---VRKGHLVSVTRD 99 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCC---cccceEEEecHH
Confidence 47888776655544321 013458999999999999999999998864322 223468899888
Q ss_pred cccccccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCC-CCchhhHHHHHHhhhcC--CCeEEEEecCchhHh
Q 002012 335 SLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGN-QSGAMDASNMLKPMLGR--GELRCIGATTLNEYR 411 (982)
Q Consensus 335 ~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~-~~~~~~~~~~L~~~le~--g~i~vI~at~~~~~~ 411 (982)
++.. .+.|+.+.++..+++.+. +.||||||+|.+.+.+. .....++++.|.+.|+. +++++|++++.+...
T Consensus 100 ~l~~--~~~g~~~~~~~~~~~~a~----~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~ 173 (284)
T TIGR02880 100 DLVG--QYIGHTAPKTKEILKRAM----GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMD 173 (284)
T ss_pred HHhH--hhcccchHHHHHHHHHcc----CcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHH
Confidence 7774 467777777777776653 24999999999864322 23346777889999874 588999999988777
Q ss_pred hhhhcChHHHhccc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHh
Q 002012 412 NYIEKDPALERRFQ-QVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLA 468 (982)
Q Consensus 412 ~~~~~d~al~rRf~-~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s 468 (982)
.++.++|+|.+||. .|.|+.++.+++..|++.+..+ .+..++++++..+..+.
T Consensus 174 ~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~----~~~~l~~~a~~~L~~~l 227 (284)
T TIGR02880 174 SFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKE----QQYRFSAEAEEAFADYI 227 (284)
T ss_pred HHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHH----hccccCHHHHHHHHHHH
Confidence 78889999999996 8999999999999999988887 35678888888776653
No 102
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.71 E-value=5.9e-17 Score=175.61 Aligned_cols=185 Identities=23% Similarity=0.369 Sum_probs=131.3
Q ss_pred cccccchHHH---HHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccccc
Q 002012 663 KRVIGQDIAV---KSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVS 739 (982)
Q Consensus 663 ~~iiGq~~a~---~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~ 739 (982)
.+++||++.+ .-|.+++. ...+.+++|+||||||||++|+.||+.. +..|..++.-..
T Consensus 24 de~vGQ~HLlg~~~~lrr~v~---------~~~l~SmIl~GPPG~GKTTlA~liA~~~---~~~f~~~sAv~~------- 84 (436)
T COG2256 24 DEVVGQEHLLGEGKPLRRAVE---------AGHLHSMILWGPPGTGKTTLARLIAGTT---NAAFEALSAVTS------- 84 (436)
T ss_pred HHhcChHhhhCCCchHHHHHh---------cCCCceeEEECCCCCCHHHHHHHHHHhh---CCceEEeccccc-------
Confidence 5678888776 44555554 3344579999999999999999999987 777877765432
Q ss_pred cccCCCCCccccccCCchhHHHhh----CCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEEecCC
Q 002012 740 RLVGAPPGYVGYEEGGQLTEVVRR----RPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNI 815 (982)
Q Consensus 740 ~l~g~~~g~vg~~~~~~l~~~l~~----~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~ 815 (982)
|..+.+.+.+..++ ....|||+|||+.++...|+.||..+|+|. +++|.+|+-
T Consensus 85 ----------gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE~G~-------------iilIGATTE 141 (436)
T COG2256 85 ----------GVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVENGT-------------IILIGATTE 141 (436)
T ss_pred ----------cHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhhhhhhhhhcCCe-------------EEEEeccCC
Confidence 11122223333322 124699999999999999999999999975 678887764
Q ss_pred ChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHHHHHHHHHhCCCCcc
Q 002012 816 GSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLH 895 (982)
Q Consensus 816 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~~~~~~~~~~~l~ 895 (982)
.+. -.+.|++++|+ .++.|.||+.+++.+++.+.+......+. +..+.
T Consensus 142 NPs-----------------------------F~ln~ALlSR~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~--~~~~~ 189 (436)
T COG2256 142 NPS-----------------------------FELNPALLSRA-RVFELKPLSSEDIKKLLKRALLDEERGLG--GQIIV 189 (436)
T ss_pred CCC-----------------------------eeecHHHhhhh-heeeeecCCHHHHHHHHHHHHhhhhcCCC--ccccc
Confidence 332 01678999999 79999999999999999986554332211 13467
Q ss_pred CCHHHHHHHHhcCCCCCCCchHHHHHHHH
Q 002012 896 YTKEAVTLLGILGFDPNFGARPVKRVIQQ 924 (982)
Q Consensus 896 i~~~a~~~L~~~~~~~~~gaR~L~~~i~~ 924 (982)
++++++++|+..+ +-.+|..-+.++-
T Consensus 190 i~~~a~~~l~~~s---~GD~R~aLN~LE~ 215 (436)
T COG2256 190 LDEEALDYLVRLS---NGDARRALNLLEL 215 (436)
T ss_pred CCHHHHHHHHHhc---CchHHHHHHHHHH
Confidence 9999999999862 2235655555553
No 103
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.70 E-value=2.5e-16 Score=186.67 Aligned_cols=214 Identities=25% Similarity=0.327 Sum_probs=153.8
Q ss_pred hhhhhHHHhhcCCCCCcccchHHHHHHHHHhccCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecc
Q 002012 255 YGNDLTELARSGKLDPVIGRDDEIRRCIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMA 334 (982)
Q Consensus 255 ~~~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~ 334 (982)
...+|.+++||..|++++|+++.++.+...+......++||+||||||||++|+++++...+........+.+++.+|++
T Consensus 51 ~~~~~~~~~rp~~f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~ 130 (531)
T TIGR02902 51 LTEPLSEKTRPKSFDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDAT 130 (531)
T ss_pred hcchHHHhhCcCCHHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccc
Confidence 45789999999999999999999999998888777889999999999999999999876533211111125688888876
Q ss_pred ccccccc-----ccccHHHHH-------------HHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcC
Q 002012 335 SLVAGTC-----YRGDFEKRL-------------KAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGR 396 (982)
Q Consensus 335 ~l~~~~~-----~~g~~e~~l-------------~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~ 396 (982)
....... ..|.....+ ......+...+ +.+||||||+.|. .+.++.|+.+++.
T Consensus 131 ~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~-gG~L~IdEI~~L~--------~~~q~~LL~~Le~ 201 (531)
T TIGR02902 131 TARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAH-GGVLFIDEIGELH--------PVQMNKLLKVLED 201 (531)
T ss_pred cccCCccccchhhcCCcccchhccccccccCCcccccCchhhccC-CcEEEEechhhCC--------HHHHHHHHHHHHh
Confidence 4210000 000000000 00001122223 4589999999996 6677888877764
Q ss_pred C------------------------------CeEEEEecCchhHhhhhhcChHHHhccceEEecCCCHHHHHHHHHHHHH
Q 002012 397 G------------------------------ELRCIGATTLNEYRNYIEKDPALERRFQQVFCDQPSVENTISILRGLRE 446 (982)
Q Consensus 397 g------------------------------~i~vI~at~~~~~~~~~~~d~al~rRf~~i~i~~Ps~~e~~~IL~~~~~ 446 (982)
+ ++++|++||.... .++|++++||..+.+++++.+++..|++..++
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~----~L~paLrsR~~~I~f~pL~~eei~~Il~~~a~ 277 (531)
T TIGR02902 202 RKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPE----EIPPALRSRCVEIFFRPLLDEEIKEIAKNAAE 277 (531)
T ss_pred CeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcc----cCChHHhhhhheeeCCCCCHHHHHHHHHHHHH
Confidence 3 3478888877653 68999999999999999999999999998887
Q ss_pred HHhhhcCCccChHHHHHHHHHhhhhhccCCCcchhhHHHHHHHHHh
Q 002012 447 RYELHHGVKISDSALVSAAVLADRYITERFLPDKAIDLVDEAAAKL 492 (982)
Q Consensus 447 ~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~p~~a~~lld~a~~~~ 492 (982)
+ .++.+++++++.+..++. ..+.+.++++.|+..+
T Consensus 278 k----~~i~is~~al~~I~~y~~-------n~Rel~nll~~Aa~~A 312 (531)
T TIGR02902 278 K----IGINLEKHALELIVKYAS-------NGREAVNIVQLAAGIA 312 (531)
T ss_pred H----cCCCcCHHHHHHHHHhhh-------hHHHHHHHHHHHHHHH
Confidence 6 578899999998777653 1367888888877644
No 104
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.70 E-value=2.2e-16 Score=186.07 Aligned_cols=204 Identities=21% Similarity=0.217 Sum_probs=157.2
Q ss_pred hhhHHHhhcCCCCCcccchHHHHHHHHHhccCCCCC-cEEeCCCCCcHHHHHHHHHHHhhcCCCCCCC------------
Q 002012 257 NDLTELARSGKLDPVIGRDDEIRRCIQILSRRTKNN-PVIIGEPGVGKTAIAEGLAQRIVRGDVPETL------------ 323 (982)
Q Consensus 257 ~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~-iLL~GppGvGKT~la~~la~~l~~~~~p~~l------------ 323 (982)
..|.++|||.+|+++||+++.++.+.+.+..+...| +||+||+|||||++|+.+|+.+.+...+...
T Consensus 4 ~vLarKYRP~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~ 83 (709)
T PRK08691 4 QVLARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQID 83 (709)
T ss_pred hhHHHHhCCCCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHh
Confidence 358899999999999999999999999888766555 6999999999999999999998654221100
Q ss_pred --CCCeEEEEecccccccccccccHHHHHHHHHHHHHh---cCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcC--
Q 002012 324 --QNRKLISLDMASLVAGTCYRGDFEKRLKAVLKEVTK---SNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGR-- 396 (982)
Q Consensus 324 --~~~~v~~l~~~~l~~~~~~~g~~e~~l~~l~~~~~~---~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~-- 396 (982)
....++.+|.++ .. ..+.++.+++.+.. .++..|+||||+|.|. ...+|.|+..|+.
T Consensus 84 ~g~~~DvlEidaAs------~~--gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls--------~~A~NALLKtLEEPp 147 (709)
T PRK08691 84 AGRYVDLLEIDAAS------NT--GIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS--------KSAFNAMLKTLEEPP 147 (709)
T ss_pred ccCccceEEEeccc------cC--CHHHHHHHHHHHHhhhhhCCcEEEEEECccccC--------HHHHHHHHHHHHhCC
Confidence 011234444321 11 12345666654432 1345699999999985 4566788888874
Q ss_pred CCeEEEEecCchhHhhhhhcChHHHhccceEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCC
Q 002012 397 GELRCIGATTLNEYRNYIEKDPALERRFQQVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERF 476 (982)
Q Consensus 397 g~i~vI~at~~~~~~~~~~~d~al~rRf~~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~ 476 (982)
+.+.+|++|+... .+.+.+++||..+.|..++.+++...|+.++.+ .++.++++++..++..+++-
T Consensus 148 ~~v~fILaTtd~~-----kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~k----Egi~id~eAL~~Ia~~A~Gs----- 213 (709)
T PRK08691 148 EHVKFILATTDPH-----KVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDS----EKIAYEPPALQLLGRAAAGS----- 213 (709)
T ss_pred CCcEEEEEeCCcc-----ccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHH----cCCCcCHHHHHHHHHHhCCC-----
Confidence 6889999998766 678899999999999999999999999988887 68999999999999998744
Q ss_pred CcchhhHHHHHHHHH
Q 002012 477 LPDKAIDLVDEAAAK 491 (982)
Q Consensus 477 ~p~~a~~lld~a~~~ 491 (982)
+++++.++|.++++
T Consensus 214 -lRdAlnLLDqaia~ 227 (709)
T PRK08691 214 -MRDALSLLDQAIAL 227 (709)
T ss_pred -HHHHHHHHHHHHHh
Confidence 48899999998875
No 105
>CHL00176 ftsH cell division protein; Validated
Probab=99.70 E-value=4.7e-16 Score=186.20 Aligned_cols=200 Identities=24% Similarity=0.329 Sum_probs=147.1
Q ss_pred CCCCCcccchHHHHHHHHH---hcc---------CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEec
Q 002012 266 GKLDPVIGRDDEIRRCIQI---LSR---------RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDM 333 (982)
Q Consensus 266 ~~l~~liG~~~~i~~l~~~---L~~---------~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~ 333 (982)
-+|++++|.++..+.+.++ +.. ..+.++||+||||||||++|+++|... +.+++.+++
T Consensus 180 ~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~----------~~p~i~is~ 249 (638)
T CHL00176 180 ITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA----------EVPFFSISG 249 (638)
T ss_pred CCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCeeeccH
Confidence 3678899988755554443 322 235689999999999999999999987 788999988
Q ss_pred ccccccccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCC---Cchh---hHHHHHHhhh----cCCCeEEEE
Q 002012 334 ASLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQ---SGAM---DASNMLKPML----GRGELRCIG 403 (982)
Q Consensus 334 ~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~---~~~~---~~~~~L~~~l----e~g~i~vI~ 403 (982)
+.+.. .+.|....+++.+|..+.. ..|+||||||+|.+...+.. .+.. ...+.|+..+ .+..+.+|+
T Consensus 250 s~f~~--~~~g~~~~~vr~lF~~A~~-~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIa 326 (638)
T CHL00176 250 SEFVE--MFVGVGAARVRDLFKKAKE-NSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIA 326 (638)
T ss_pred HHHHH--HhhhhhHHHHHHHHHHHhc-CCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEE
Confidence 87763 3566667788889988875 67889999999999755321 1222 2334444444 346789999
Q ss_pred ecCchhHhhhhhcChHHHh--ccc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCCcch
Q 002012 404 ATTLNEYRNYIEKDPALER--RFQ-QVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLPDK 480 (982)
Q Consensus 404 at~~~~~~~~~~~d~al~r--Rf~-~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~p~~ 480 (982)
+||..+ .+|+++.| ||+ .|.++.|+.+++..||+.++... ...++..+..++..+ .++.+++
T Consensus 327 aTN~~~-----~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~-----~~~~d~~l~~lA~~t-----~G~sgaD 391 (638)
T CHL00176 327 ATNRVD-----ILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNK-----KLSPDVSLELIARRT-----PGFSGAD 391 (638)
T ss_pred ecCchH-----hhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhc-----ccchhHHHHHHHhcC-----CCCCHHH
Confidence 999988 68999998 886 89999999999999998877651 122344555666553 3456788
Q ss_pred hhHHHHHHHHHhh
Q 002012 481 AIDLVDEAAAKLK 493 (982)
Q Consensus 481 a~~lld~a~~~~~ 493 (982)
...++.+|+..+.
T Consensus 392 L~~lvneAal~a~ 404 (638)
T CHL00176 392 LANLLNEAAILTA 404 (638)
T ss_pred HHHHHHHHHHHHH
Confidence 8899998875543
No 106
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.70 E-value=1.1e-15 Score=180.55 Aligned_cols=203 Identities=23% Similarity=0.229 Sum_probs=157.3
Q ss_pred hhHHHhhcCCCCCcccchHHHHHHHHHhccCCCCCc-EEeCCCCCcHHHHHHHHHHHhhcCCCCCC--------------
Q 002012 258 DLTELARSGKLDPVIGRDDEIRRCIQILSRRTKNNP-VIIGEPGVGKTAIAEGLAQRIVRGDVPET-------------- 322 (982)
Q Consensus 258 ~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~i-LL~GppGvGKT~la~~la~~l~~~~~p~~-------------- 322 (982)
.|.++|||.+|+++||+++.++.+.+.+......|. ||+||+|+|||++|+.+|+.+.+......
T Consensus 5 ~l~~k~rP~~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~ 84 (527)
T PRK14969 5 VLARKWRPKSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDS 84 (527)
T ss_pred HHHHHhCCCcHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhc
Confidence 488999999999999999999999999888777775 89999999999999999999865321110
Q ss_pred CCCCeEEEEecccccccccccccHHHHHHHHHHHHHhc---CCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcC--C
Q 002012 323 LQNRKLISLDMASLVAGTCYRGDFEKRLKAVLKEVTKS---NGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGR--G 397 (982)
Q Consensus 323 l~~~~v~~l~~~~l~~~~~~~g~~e~~l~~l~~~~~~~---~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~--g 397 (982)
.....++.++.+. . ...+.++.+++.+... ++..|+||||+|.|. ..++|.|+..++. +
T Consensus 85 ~~~~d~~ei~~~~------~--~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls--------~~a~naLLK~LEepp~ 148 (527)
T PRK14969 85 GRFVDLIEVDAAS------N--TQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLS--------KSAFNAMLKTLEEPPE 148 (527)
T ss_pred CCCCceeEeeccc------c--CCHHHHHHHHHHHhhCcccCCceEEEEcCcccCC--------HHHHHHHHHHHhCCCC
Confidence 0011344444321 1 1133456666655432 345699999999986 4567888888885 6
Q ss_pred CeEEEEecCchhHhhhhhcChHHHhccceEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCC
Q 002012 398 ELRCIGATTLNEYRNYIEKDPALERRFQQVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFL 477 (982)
Q Consensus 398 ~i~vI~at~~~~~~~~~~~d~al~rRf~~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~ 477 (982)
.+.+|++||... .+.+.+++||..+.|..++.+++...|..++.+ .++.++++++..++..+++.
T Consensus 149 ~~~fIL~t~d~~-----kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~----egi~~~~~al~~la~~s~Gs------ 213 (527)
T PRK14969 149 HVKFILATTDPQ-----KIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQ----ENIPFDATALQLLARAAAGS------ 213 (527)
T ss_pred CEEEEEEeCChh-----hCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC------
Confidence 889999998776 567789999999999999999999888877776 57889999999999997743
Q ss_pred cchhhHHHHHHHHH
Q 002012 478 PDKAIDLVDEAAAK 491 (982)
Q Consensus 478 p~~a~~lld~a~~~ 491 (982)
+++++.+++.++++
T Consensus 214 lr~al~lldqai~~ 227 (527)
T PRK14969 214 MRDALSLLDQAIAY 227 (527)
T ss_pred HHHHHHHHHHHHHh
Confidence 48999999998875
No 107
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.70 E-value=4.7e-16 Score=181.08 Aligned_cols=204 Identities=24% Similarity=0.263 Sum_probs=158.9
Q ss_pred hhHHHhhcCCCCCcccchHHHHHHHHHhccCCCCCc-EEeCCCCCcHHHHHHHHHHHhhcCCCCC--------------C
Q 002012 258 DLTELARSGKLDPVIGRDDEIRRCIQILSRRTKNNP-VIIGEPGVGKTAIAEGLAQRIVRGDVPE--------------T 322 (982)
Q Consensus 258 ~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~i-LL~GppGvGKT~la~~la~~l~~~~~p~--------------~ 322 (982)
.|.++|||.+|+++||+++.++.+...+..+...|+ ||+||+|+|||++|+.+++.+.+...+. .
T Consensus 3 ~l~~KyRP~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~ 82 (535)
T PRK08451 3 ALALKYRPKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALE 82 (535)
T ss_pred cHHHHHCCCCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhh
Confidence 478999999999999999999999999888777776 8999999999999999999987543221 0
Q ss_pred CCCCeEEEEecccccccccccccHHHHHHHHHHHHHhc---CCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcC--C
Q 002012 323 LQNRKLISLDMASLVAGTCYRGDFEKRLKAVLKEVTKS---NGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGR--G 397 (982)
Q Consensus 323 l~~~~v~~l~~~~l~~~~~~~g~~e~~l~~l~~~~~~~---~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~--g 397 (982)
..+..++.++.++ .+| .+.++.++...... ++..|++|||+|+|. .+++|.|+..++. .
T Consensus 83 ~~h~dv~eldaas------~~g--Id~IRelie~~~~~P~~~~~KVvIIDEad~Lt--------~~A~NALLK~LEEpp~ 146 (535)
T PRK08451 83 NRHIDIIEMDAAS------NRG--IDDIRELIEQTKYKPSMARFKIFIIDEVHMLT--------KEAFNALLKTLEEPPS 146 (535)
T ss_pred cCCCeEEEecccc------ccC--HHHHHHHHHHHhhCcccCCeEEEEEECcccCC--------HHHHHHHHHHHhhcCC
Confidence 1233445544221 111 23455555543321 345699999999996 6778889999985 6
Q ss_pred CeEEEEecCchhHhhhhhcChHHHhccceEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCC
Q 002012 398 ELRCIGATTLNEYRNYIEKDPALERRFQQVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFL 477 (982)
Q Consensus 398 ~i~vI~at~~~~~~~~~~~d~al~rRf~~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~ 477 (982)
.+.+|++|+... .+.+++++||..++|..++.+++...++.++.+ .|+.++++++..++..+++ .
T Consensus 147 ~t~FIL~ttd~~-----kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~----EGi~i~~~Al~~Ia~~s~G------d 211 (535)
T PRK08451 147 YVKFILATTDPL-----KLPATILSRTQHFRFKQIPQNSIISHLKTILEK----EGVSYEPEALEILARSGNG------S 211 (535)
T ss_pred ceEEEEEECChh-----hCchHHHhhceeEEcCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCC------c
Confidence 788888887764 678999999999999999999999999888776 5889999999999999774 3
Q ss_pred cchhhHHHHHHHHHh
Q 002012 478 PDKAIDLVDEAAAKL 492 (982)
Q Consensus 478 p~~a~~lld~a~~~~ 492 (982)
++++..+++.++.+.
T Consensus 212 lR~alnlLdqai~~~ 226 (535)
T PRK08451 212 LRDTLTLLDQAIIYC 226 (535)
T ss_pred HHHHHHHHHHHHHhc
Confidence 588999999988764
No 108
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.70 E-value=3.2e-15 Score=185.65 Aligned_cols=183 Identities=20% Similarity=0.278 Sum_probs=131.0
Q ss_pred CCcccchHHHHHHHHHhcc---------CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccc-
Q 002012 269 DPVIGRDDEIRRCIQILSR---------RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVA- 338 (982)
Q Consensus 269 ~~liG~~~~i~~l~~~L~~---------~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~- 338 (982)
..|+||++.+..+.+.+.+ ++...+||+||||||||.+|++||+.+..+ ...++.+||+.+..
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~-------~~~~~~~dmse~~~~ 638 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGG-------EQNLITINMSEFQEA 638 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCC-------CcceEEEeHHHhhhh
Confidence 3599999999999887743 122247999999999999999999998543 45788899877642
Q ss_pred ---------cccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCC------------
Q 002012 339 ---------GTCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRG------------ 397 (982)
Q Consensus 339 ---------~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g------------ 397 (982)
+..|.|..+. ..+.+....++.+||+||||+.+. .++.+.|+++++.|
T Consensus 639 ~~~~~l~g~~~gyvg~~~~---g~L~~~v~~~p~svvllDEieka~--------~~v~~~Llq~ld~g~l~d~~Gr~vd~ 707 (852)
T TIGR03345 639 HTVSRLKGSPPGYVGYGEG---GVLTEAVRRKPYSVVLLDEVEKAH--------PDVLELFYQVFDKGVMEDGEGREIDF 707 (852)
T ss_pred hhhccccCCCCCccccccc---chHHHHHHhCCCcEEEEechhhcC--------HHHHHHHHHHhhcceeecCCCcEEec
Confidence 2345554332 223233333677899999999765 67889999999865
Q ss_pred -CeEEEEecCchh---------------Hhh---------hhhcChHHHhccceEEecCCCHHHHHHHHHHHHHHH----
Q 002012 398 -ELRCIGATTLNE---------------YRN---------YIEKDPALERRFQQVFCDQPSVENTISILRGLRERY---- 448 (982)
Q Consensus 398 -~i~vI~at~~~~---------------~~~---------~~~~d~al~rRf~~i~i~~Ps~~e~~~IL~~~~~~~---- 448 (982)
+..+|+|+|... +.. .....|+|.+|++.|.|.+.+.+++.+|+.....+.
T Consensus 708 ~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~iI~F~pLs~e~l~~Iv~~~L~~l~~rl 787 (852)
T TIGR03345 708 KNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMTVIPYLPLDDDVLAAIVRLKLDRIARRL 787 (852)
T ss_pred cccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhcceeEEEeCCCCHHHHHHHHHHHHHHHHHHH
Confidence 357888877411 000 011579999999988888889999999997655443
Q ss_pred hhhcC--CccChHHHHHHHHHhh
Q 002012 449 ELHHG--VKISDSALVSAAVLAD 469 (982)
Q Consensus 449 ~~~~~--v~i~~~~l~~~~~~s~ 469 (982)
...++ +.++++++.+++..+.
T Consensus 788 ~~~~gi~l~i~d~a~~~La~~g~ 810 (852)
T TIGR03345 788 KENHGAELVYSEALVEHIVARCT 810 (852)
T ss_pred HHhcCceEEECHHHHHHHHHHcC
Confidence 22324 5789999999988864
No 109
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=1.1e-16 Score=168.41 Aligned_cols=152 Identities=22% Similarity=0.392 Sum_probs=116.3
Q ss_pred eEEEEccccccC------------HHHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCChHHHHHhhhhcccchHHH
Q 002012 767 SVVLFDEIEKAH------------QDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAV 834 (982)
Q Consensus 767 ~Vl~lDEidkl~------------~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~ 834 (982)
+|+|||||||.. .++|.-||.++|...+...+| .+...++.||++.-.....-
T Consensus 252 GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG-~VkTdHILFIasGAFh~sKP-------------- 316 (444)
T COG1220 252 GIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYG-PVKTDHILFIASGAFHVAKP-------------- 316 (444)
T ss_pred CeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeecccc-ccccceEEEEecCceecCCh--------------
Confidence 499999999973 248999999998545444333 45667888888765422100
Q ss_pred HHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHH----HHHHHHHHHHHhCCCCccCCHHHHHHHHhcCCC
Q 002012 835 YEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVE----IQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFD 910 (982)
Q Consensus 835 ~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~----~~l~~~~~~~~~~~~~l~i~~~a~~~L~~~~~~ 910 (982)
+.+-|+|.+||...|.+.+|+.+++..|+. ..++++...++..++.+.|++++++.|++..|.
T Consensus 317 -------------SDLiPELQGRfPIRVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~~ 383 (444)
T COG1220 317 -------------SDLIPELQGRFPIRVELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIAYQ 383 (444)
T ss_pred -------------hhcChhhcCCCceEEEcccCCHHHHHHHHcCcchHHHHHHHHHHhhcCeeEEecHHHHHHHHHHHHH
Confidence 127899999999999999999999999994 446677777888899999999999999987654
Q ss_pred -----CCCCchHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEEee
Q 002012 911 -----PNFGARPVKRVIQQLVENEIAVAILKGDIKEEDSVIIDVD 950 (982)
Q Consensus 911 -----~~~gaR~L~~~i~~~l~~~la~~~l~~~~~~~~~i~v~~~ 950 (982)
.|+|||.|..+++++++.. -.+.....|.++.|+.+
T Consensus 384 vN~~~ENIGARRLhTvlErlLedi----SFeA~d~~g~~v~Id~~ 424 (444)
T COG1220 384 VNEKTENIGARRLHTVLERLLEDI----SFEAPDMSGQKVTIDAE 424 (444)
T ss_pred hcccccchhHHHHHHHHHHHHHHh----CccCCcCCCCeEEEcHH
Confidence 4789999999999865552 34444566888888765
No 110
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.70 E-value=3.3e-16 Score=176.26 Aligned_cols=190 Identities=23% Similarity=0.277 Sum_probs=141.5
Q ss_pred hHHHhhcCCCCCcccchHHHHHHHHHhc-----cCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEec
Q 002012 259 LTELARSGKLDPVIGRDDEIRRCIQILS-----RRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDM 333 (982)
Q Consensus 259 l~~~~~~~~l~~liG~~~~i~~l~~~L~-----~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~ 333 (982)
+..++||..|++++|+++.++.+...+. ....++++|+||||||||++|+.+|+.+ +..+...+.
T Consensus 15 ~~~~~rP~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l----------~~~~~~~~~ 84 (328)
T PRK00080 15 IERSLRPKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM----------GVNIRITSG 84 (328)
T ss_pred hhhhcCcCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh----------CCCeEEEec
Confidence 3567899999999999999888776654 2345689999999999999999999998 555555543
Q ss_pred ccccccccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCC----------------
Q 002012 334 ASLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRG---------------- 397 (982)
Q Consensus 334 ~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g---------------- 397 (982)
..+. ....+..++..+ ..+.||||||||.+.. ...+.|...++..
T Consensus 85 ~~~~--------~~~~l~~~l~~l---~~~~vl~IDEi~~l~~--------~~~e~l~~~~e~~~~~~~l~~~~~~~~~~ 145 (328)
T PRK00080 85 PALE--------KPGDLAAILTNL---EEGDVLFIDEIHRLSP--------VVEEILYPAMEDFRLDIMIGKGPAARSIR 145 (328)
T ss_pred cccc--------ChHHHHHHHHhc---ccCCEEEEecHhhcch--------HHHHHHHHHHHhcceeeeeccCcccccee
Confidence 3221 112233444333 3456999999999852 3344555555422
Q ss_pred ----CeEEEEecCchhHhhhhhcChHHHhccc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhh
Q 002012 398 ----ELRCIGATTLNEYRNYIEKDPALERRFQ-QVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYI 472 (982)
Q Consensus 398 ----~i~vI~at~~~~~~~~~~~d~al~rRf~-~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i 472 (982)
.+.+|++||... .++++|++||. .+.+..|+.+++.+|++..... .++.++++++..++..+.+
T Consensus 146 ~~l~~~~li~at~~~~-----~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~----~~~~~~~~~~~~ia~~~~G-- 214 (328)
T PRK00080 146 LDLPPFTLIGATTRAG-----LLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARI----LGVEIDEEGALEIARRSRG-- 214 (328)
T ss_pred ecCCCceEEeecCCcc-----cCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHH----cCCCcCHHHHHHHHHHcCC--
Confidence 367899998876 68899999996 7899999999999999877766 5889999999999998775
Q ss_pred ccCCCcchhhHHHHHHHHHh
Q 002012 473 TERFLPDKAIDLVDEAAAKL 492 (982)
Q Consensus 473 ~~~~~p~~a~~lld~a~~~~ 492 (982)
.|+.+..+++.+....
T Consensus 215 ----~pR~a~~~l~~~~~~a 230 (328)
T PRK00080 215 ----TPRIANRLLRRVRDFA 230 (328)
T ss_pred ----CchHHHHHHHHHHHHH
Confidence 4677888887655443
No 111
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.70 E-value=6.1e-16 Score=184.12 Aligned_cols=203 Identities=22% Similarity=0.242 Sum_probs=157.9
Q ss_pred hhHHHhhcCCCCCcccchHHHHHHHHHhccCCCCC-cEEeCCCCCcHHHHHHHHHHHhhcCCCCCC--------------
Q 002012 258 DLTELARSGKLDPVIGRDDEIRRCIQILSRRTKNN-PVIIGEPGVGKTAIAEGLAQRIVRGDVPET-------------- 322 (982)
Q Consensus 258 ~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~-iLL~GppGvGKT~la~~la~~l~~~~~p~~-------------- 322 (982)
.|..++||.+|++++|+++.++.+.+.+......| +||+||+|||||++|+.+|+.+.+...+..
T Consensus 5 al~~k~rP~~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~ 84 (559)
T PRK05563 5 ALYRKWRPQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITN 84 (559)
T ss_pred HHHHHhCCCcHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhc
Confidence 47889999999999999999999999988776667 578999999999999999999876432211
Q ss_pred CCCCeEEEEecccccccccccccHHHHHHHHHHHHHh---cCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcC--C
Q 002012 323 LQNRKLISLDMASLVAGTCYRGDFEKRLKAVLKEVTK---SNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGR--G 397 (982)
Q Consensus 323 l~~~~v~~l~~~~l~~~~~~~g~~e~~l~~l~~~~~~---~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~--g 397 (982)
.....++.+|.++ . .....++.+.+.+.. .+.+.|+||||+|+|. ..+.|.|+..++. .
T Consensus 85 g~~~dv~eidaas------~--~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt--------~~a~naLLKtLEepp~ 148 (559)
T PRK05563 85 GSLMDVIEIDAAS------N--NGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLS--------TGAFNALLKTLEEPPA 148 (559)
T ss_pred CCCCCeEEeeccc------c--CCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC--------HHHHHHHHHHhcCCCC
Confidence 1123455555321 1 123345566665553 2445699999999996 4567888888874 5
Q ss_pred CeEEEEecCchhHhhhhhcChHHHhccceEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCC
Q 002012 398 ELRCIGATTLNEYRNYIEKDPALERRFQQVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFL 477 (982)
Q Consensus 398 ~i~vI~at~~~~~~~~~~~d~al~rRf~~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~ 477 (982)
.+.+|++|+... .+.+.+++||+.+.|..|+.+++...|+.++++ .|+.++++++..++..+++-
T Consensus 149 ~~ifIlatt~~~-----ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~----egi~i~~~al~~ia~~s~G~------ 213 (559)
T PRK05563 149 HVIFILATTEPH-----KIPATILSRCQRFDFKRISVEDIVERLKYILDK----EGIEYEDEALRLIARAAEGG------ 213 (559)
T ss_pred CeEEEEEeCChh-----hCcHHHHhHheEEecCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC------
Confidence 788888887665 688999999999999999999999999888776 68899999999999987643
Q ss_pred cchhhHHHHHHHHH
Q 002012 478 PDKAIDLVDEAAAK 491 (982)
Q Consensus 478 p~~a~~lld~a~~~ 491 (982)
++++..+++.+.++
T Consensus 214 ~R~al~~Ldq~~~~ 227 (559)
T PRK05563 214 MRDALSILDQAISF 227 (559)
T ss_pred HHHHHHHHHHHHHh
Confidence 47889999988765
No 112
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.70 E-value=8.7e-17 Score=160.92 Aligned_cols=205 Identities=18% Similarity=0.248 Sum_probs=155.0
Q ss_pred HHhhhhhHHHhhcCCCCCcccchHHHHHHHHHhccCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEe
Q 002012 253 EKYGNDLTELARSGKLDPVIGRDDEIRRCIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLD 332 (982)
Q Consensus 253 ~~~~~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~ 332 (982)
++|..+|.++|||..+.++||.++.+.++.-+...++.+|++|.||||+||||-+.+||+++....+ .-.++++|
T Consensus 11 ~~~~l~wVeKYrP~~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~-----ke~vLELN 85 (333)
T KOG0991|consen 11 DKYQLPWVEKYRPSVLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSY-----KEAVLELN 85 (333)
T ss_pred ccccchHHHhhCchHHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhh-----hhHhhhcc
Confidence 3566679999999999999999999999999999999999999999999999999999999854322 34677888
Q ss_pred cccccccccccccHHHHHHHHHHHHHh--cCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhc--CCCeEEEEecCch
Q 002012 333 MASLVAGTCYRGDFEKRLKAVLKEVTK--SNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLG--RGELRCIGATTLN 408 (982)
Q Consensus 333 ~~~l~~~~~~~g~~e~~l~~l~~~~~~--~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le--~g~i~vI~at~~~ 408 (982)
.++-.+- .-+..+++..-+.-.. .+...|+++||+|.+. .-++..|+..|+ ....+|..++|..
T Consensus 86 ASdeRGI----DvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT--------~gAQQAlRRtMEiyS~ttRFalaCN~s 153 (333)
T KOG0991|consen 86 ASDERGI----DVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMT--------AGAQQALRRTMEIYSNTTRFALACNQS 153 (333)
T ss_pred Ccccccc----HHHHHHHHHHHHhhccCCCCceeEEEeeccchhh--------hHHHHHHHHHHHHHcccchhhhhhcch
Confidence 6653311 1122223222211111 1334699999999986 345567888887 6788999999988
Q ss_pred hHhhhhhcChHHHhccceEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCCcchhhHHHHHH
Q 002012 409 EYRNYIEKDPALERRFQQVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLPDKAIDLVDEA 488 (982)
Q Consensus 409 ~~~~~~~~d~al~rRf~~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~p~~a~~lld~a 488 (982)
+ ++-..+.+||..+.+...+..++..-|..+.+. .++.++++.+++++..+++.+ +.+.+.+...
T Consensus 154 ~-----KIiEPIQSRCAiLRysklsd~qiL~Rl~~v~k~----Ekv~yt~dgLeaiifta~GDM------RQalNnLQst 218 (333)
T KOG0991|consen 154 E-----KIIEPIQSRCAILRYSKLSDQQILKRLLEVAKA----EKVNYTDDGLEAIIFTAQGDM------RQALNNLQST 218 (333)
T ss_pred h-----hhhhhHHhhhHhhhhcccCHHHHHHHHHHHHHH----hCCCCCcchHHHhhhhccchH------HHHHHHHHHH
Confidence 7 667789999999999999998877766666655 689999999999999988654 4455555443
Q ss_pred H
Q 002012 489 A 489 (982)
Q Consensus 489 ~ 489 (982)
.
T Consensus 219 ~ 219 (333)
T KOG0991|consen 219 V 219 (333)
T ss_pred h
Confidence 3
No 113
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=1e-16 Score=161.82 Aligned_cols=177 Identities=21% Similarity=0.335 Sum_probs=138.8
Q ss_pred CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccccccccccHHHHHHHHHHHHHhcCCCeEEE
Q 002012 288 RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILF 367 (982)
Q Consensus 288 ~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~ 367 (982)
.+++++|+|||||||||++|+++|+.- ...++.+.-+.++ .+|.|+.....+++|..++. +.|.|+|
T Consensus 187 dpprgvllygppg~gktml~kava~~t----------~a~firvvgsefv--qkylgegprmvrdvfrlake-napsiif 253 (408)
T KOG0727|consen 187 DPPRGVLLYGPPGTGKTMLAKAVANHT----------TAAFIRVVGSEFV--QKYLGEGPRMVRDVFRLAKE-NAPSIIF 253 (408)
T ss_pred CCCcceEEeCCCCCcHHHHHHHHhhcc----------chheeeeccHHHH--HHHhccCcHHHHHHHHHHhc-cCCcEEE
Confidence 578899999999999999999999875 7788898888888 56999999999999998886 7889999
Q ss_pred EccchhhhhCC---CCCchhhHHHHHHhhhc-------CCCeEEEEecCchhHhhhhhcChHHHh--ccc-eEEecCCCH
Q 002012 368 IDELHTIIGAG---NQSGAMDASNMLKPMLG-------RGELRCIGATTLNEYRNYIEKDPALER--RFQ-QVFCDQPSV 434 (982)
Q Consensus 368 IDEi~~l~~~~---~~~~~~~~~~~L~~~le-------~g~i~vI~at~~~~~~~~~~~d~al~r--Rf~-~i~i~~Ps~ 434 (982)
||||+.+...+ +++...+++.+|..++. ..++.+|.+||..+ .+||+|.| |++ .|+|+.|+.
T Consensus 254 ideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnrad-----tldpallrpgrldrkiefplpdr 328 (408)
T KOG0727|consen 254 IDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRAD-----TLDPALLRPGRLDRKIEFPLPDR 328 (408)
T ss_pred eehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCccc-----ccCHhhcCCccccccccCCCCch
Confidence 99999997653 34556788888888775 34899999999998 79999999 886 999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCCcchhhHHHHHHHHHh
Q 002012 435 ENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLPDKAIDLVDEAAAKL 492 (982)
Q Consensus 435 ~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~p~~a~~lld~a~~~~ 492 (982)
.+..-++..+..++.....+. ++.++.. ++.-...+...++.+|+..+
T Consensus 329 rqkrlvf~titskm~ls~~vd-----le~~v~r-----pdkis~adi~aicqeagm~a 376 (408)
T KOG0727|consen 329 RQKRLVFSTITSKMNLSDEVD-----LEDLVAR-----PDKISGADINAICQEAGMLA 376 (408)
T ss_pred hhhhhhHHhhhhcccCCcccC-----HHHHhcC-----ccccchhhHHHHHHHHhHHH
Confidence 998888888888754332222 2222222 33333455556666666543
No 114
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.70 E-value=5.6e-16 Score=183.80 Aligned_cols=214 Identities=24% Similarity=0.354 Sum_probs=150.1
Q ss_pred hcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHh-------cCCCCceEEEecccc--
Q 002012 662 HKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFL-------FNTENALVRIDMSEY-- 732 (982)
Q Consensus 662 ~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l-------~~~~~~~v~i~~s~~-- 732 (982)
+++++||+.+++.+..++. + ..+ .++||+||||||||++|+++++.. +..+.+|+.+||...
T Consensus 64 f~~iiGqs~~i~~l~~al~----~----~~~-~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~ 134 (531)
T TIGR02902 64 FDEIIGQEEGIKALKAALC----G----PNP-QHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARF 134 (531)
T ss_pred HHHeeCcHHHHHHHHHHHh----C----CCC-ceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccC
Confidence 4579999999998876542 1 122 259999999999999999998764 222468999998742
Q ss_pred ccccccccccCCC--CCcccccc------CCchhHHHhhCCCeEEEEccccccCHHHHHHHHHhhhcCceecC------C
Q 002012 733 MEKHSVSRLVGAP--PGYVGYEE------GGQLTEVVRRRPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDS------Q 798 (982)
Q Consensus 733 ~~~~~~~~l~g~~--~g~vg~~~------~~~l~~~l~~~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~------~ 798 (982)
.+..-...++|.. +.|.+... ...-.+.+.++.+++||||||+.+++..|+.|+++||++.+... .
T Consensus 135 ~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~~q~~LL~~Le~~~~~~~~~~~~~~ 214 (531)
T TIGR02902 135 DERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPVQMNKLLKVLEDRKVFLDSAYYNSE 214 (531)
T ss_pred CccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHHHHHHHHHHHHhCeeeecccccccc
Confidence 2211112344432 11222110 01123467788899999999999999999999999998865421 1
Q ss_pred CcE-----------EecccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCC
Q 002012 799 GRT-----------VSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPL 867 (982)
Q Consensus 799 g~~-----------~~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl 867 (982)
+.. --..++++|++|+.... .++|++.+|| ..|.|+||
T Consensus 215 ~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~------------------------------~L~paLrsR~-~~I~f~pL 263 (531)
T TIGR02902 215 NPNIPSHIHDIFQNGLPADFRLIGATTRNPE------------------------------EIPPALRSRC-VEIFFRPL 263 (531)
T ss_pred CcccccchhhhcccCcccceEEEEEecCCcc------------------------------cCChHHhhhh-heeeCCCC
Confidence 100 01245677777665432 1678999999 57899999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhCCCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHHHHHH
Q 002012 868 DSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVEN 928 (982)
Q Consensus 868 ~~~~l~~il~~~l~~~~~~~~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~l~~ 928 (982)
+.+++.+|++..+++ .+ +.+++++++.|..++| +.|.+.++++.....
T Consensus 264 ~~eei~~Il~~~a~k-------~~--i~is~~al~~I~~y~~----n~Rel~nll~~Aa~~ 311 (531)
T TIGR02902 264 LDEEIKEIAKNAAEK-------IG--INLEKHALELIVKYAS----NGREAVNIVQLAAGI 311 (531)
T ss_pred CHHHHHHHHHHHHHH-------cC--CCcCHHHHHHHHHhhh----hHHHHHHHHHHHHHH
Confidence 999999999987765 23 7899999999988766 359999999886543
No 115
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=1.2e-16 Score=161.15 Aligned_cols=150 Identities=23% Similarity=0.402 Sum_probs=127.9
Q ss_pred CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccccccccccHHHHHHHHHHHHHhcCCCeEEE
Q 002012 288 RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILF 367 (982)
Q Consensus 288 ~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~ 367 (982)
..+.++|||||||+|||.+|+++|..- .|.++.+.-+.++ .+|.|+.....+++|-.++. +.|+|+|
T Consensus 179 aQPKGvlLygppgtGktLlaraVahht----------~c~firvsgselv--qk~igegsrmvrelfvmare-hapsiif 245 (404)
T KOG0728|consen 179 AQPKGVLLYGPPGTGKTLLARAVAHHT----------DCTFIRVSGSELV--QKYIGEGSRMVRELFVMARE-HAPSIIF 245 (404)
T ss_pred CCCcceEEecCCCCchhHHHHHHHhhc----------ceEEEEechHHHH--HHHhhhhHHHHHHHHHHHHh-cCCceEe
Confidence 456789999999999999999999876 8999999989988 56999999999999988876 6789999
Q ss_pred EccchhhhhCCC---CCchhhHHHHHHhhhc-------CCCeEEEEecCchhHhhhhhcChHHHh--ccc-eEEecCCCH
Q 002012 368 IDELHTIIGAGN---QSGAMDASNMLKPMLG-------RGELRCIGATTLNEYRNYIEKDPALER--RFQ-QVFCDQPSV 434 (982)
Q Consensus 368 IDEi~~l~~~~~---~~~~~~~~~~L~~~le-------~g~i~vI~at~~~~~~~~~~~d~al~r--Rf~-~i~i~~Ps~ 434 (982)
.||||.+..++. ++|+.+++..++.++. ..+|.+|.+||.-+ .+||+|.| |++ .|+|++|+.
T Consensus 246 mdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnrid-----ild~allrpgridrkiefp~p~e 320 (404)
T KOG0728|consen 246 MDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRID-----ILDPALLRPGRIDRKIEFPPPNE 320 (404)
T ss_pred eecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccc-----cccHhhcCCCcccccccCCCCCH
Confidence 999999976542 3456677777766663 56899999999998 79999999 886 999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCc
Q 002012 435 ENTISILRGLRERYELHHGVK 455 (982)
Q Consensus 435 ~e~~~IL~~~~~~~~~~~~v~ 455 (982)
+.+.+||+....++....|+.
T Consensus 321 ~ar~~ilkihsrkmnl~rgi~ 341 (404)
T KOG0728|consen 321 EARLDILKIHSRKMNLTRGIN 341 (404)
T ss_pred HHHHHHHHHhhhhhchhcccC
Confidence 999999998877766655554
No 116
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=3.5e-16 Score=174.45 Aligned_cols=198 Identities=24% Similarity=0.375 Sum_probs=155.5
Q ss_pred hcCCCCCcccchHHHHHHHHHh------------ccCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEE
Q 002012 264 RSGKLDPVIGRDDEIRRCIQIL------------SRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISL 331 (982)
Q Consensus 264 ~~~~l~~liG~~~~i~~l~~~L------------~~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l 331 (982)
++-.++++-|.+..-+.+.+++ .|.....+||.||||+|||+|++++|-+. +..++.+
T Consensus 148 ~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~----------~atff~i 217 (428)
T KOG0740|consen 148 RNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATES----------GATFFNI 217 (428)
T ss_pred CcccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhh----------cceEeec
Confidence 3445667777655444433322 24566789999999999999999999988 8999999
Q ss_pred ecccccccccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhH-----HHHHHhhhc-----CCCeEE
Q 002012 332 DMASLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDA-----SNMLKPMLG-----RGELRC 401 (982)
Q Consensus 332 ~~~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~-----~~~L~~~le-----~g~i~v 401 (982)
..+++. .+|.|+.+..++.+|.-++. ..|.|+||||+|.++..+. ....+. ..+|.+..- ..+|.+
T Consensus 218 SassLt--sK~~Ge~eK~vralf~vAr~-~qPsvifidEidslls~Rs-~~e~e~srr~ktefLiq~~~~~s~~~drvlv 293 (428)
T KOG0740|consen 218 SASSLT--SKYVGESEKLVRALFKVARS-LQPSVIFIDEIDSLLSKRS-DNEHESSRRLKTEFLLQFDGKNSAPDDRVLV 293 (428)
T ss_pred cHHHhh--hhccChHHHHHHHHHHHHHh-cCCeEEEechhHHHHhhcC-CcccccchhhhhHHHhhhccccCCCCCeEEE
Confidence 999998 56999999999999987775 6788999999999998763 332222 234444432 458999
Q ss_pred EEecCchhHhhhhhcChHHHhccc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCCcch
Q 002012 402 IGATTLNEYRNYIEKDPALERRFQ-QVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLPDK 480 (982)
Q Consensus 402 I~at~~~~~~~~~~~d~al~rRf~-~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~p~~ 480 (982)
|||||.+. ++|.+++|||+ .++|+.|+.+.+..+|..++.+ ++..+.+..+..+++..++|- ..+
T Consensus 294 igaTN~P~-----e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~----~~~~l~~~d~~~l~~~Tegys-----gsd 359 (428)
T KOG0740|consen 294 IGATNRPW-----ELDEAARRRFVKRLYIPLPDYETRSLLWKQLLKE----QPNGLSDLDISLLAKVTEGYS-----GSD 359 (428)
T ss_pred EecCCCch-----HHHHHHHHHhhceeeecCCCHHHHHHHHHHHHHh----CCCCccHHHHHHHHHHhcCcc-----ccc
Confidence 99999998 89999999998 8899999999999999999888 366788888999999976654 466
Q ss_pred hhHHHHHHH
Q 002012 481 AIDLVDEAA 489 (982)
Q Consensus 481 a~~lld~a~ 489 (982)
..+++.+|.
T Consensus 360 i~~l~kea~ 368 (428)
T KOG0740|consen 360 ITALCKEAA 368 (428)
T ss_pred HHHHHHHhh
Confidence 777776665
No 117
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=2.5e-16 Score=169.26 Aligned_cols=196 Identities=25% Similarity=0.403 Sum_probs=150.1
Q ss_pred CCCCcccchHHHHHHHHHh----cc----------CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEe
Q 002012 267 KLDPVIGRDDEIRRCIQIL----SR----------RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLD 332 (982)
Q Consensus 267 ~l~~liG~~~~i~~l~~~L----~~----------~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~ 332 (982)
+++++-|-+..+..+.+.. .+ ++..++||+||||||||.+|+++|++. +..++.+.
T Consensus 90 ~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akea----------ga~fInv~ 159 (386)
T KOG0737|consen 90 SFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEA----------GANFINVS 159 (386)
T ss_pred ehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHc----------CCCcceee
Confidence 4566666666555544421 00 367799999999999999999999998 99999999
Q ss_pred cccccccccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHh-hh---------cCCCeEEE
Q 002012 333 MASLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKP-ML---------GRGELRCI 402 (982)
Q Consensus 333 ~~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~-~l---------e~g~i~vI 402 (982)
++.+++ ++-|+.++..+.+|.-+.. =.|+|+||||++.+.+.+ ..+..++...++. +| ++.+|.|+
T Consensus 160 ~s~lt~--KWfgE~eKlv~AvFslAsK-l~P~iIFIDEvds~L~~R-~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVl 235 (386)
T KOG0737|consen 160 VSNLTS--KWFGEAQKLVKAVFSLASK-LQPSIIFIDEVDSFLGQR-RSTDHEATAMMKNEFMALWDGLSSKDSERVLVL 235 (386)
T ss_pred ccccch--hhHHHHHHHHHHHHhhhhh-cCcceeehhhHHHHHhhc-ccchHHHHHHHHHHHHHHhccccCCCCceEEEE
Confidence 999995 6889999999999988775 468999999999999888 4555666555543 33 13369999
Q ss_pred EecCchhHhhhhhcChHHHhccc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCCcchh
Q 002012 403 GATTLNEYRNYIEKDPALERRFQ-QVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLPDKA 481 (982)
Q Consensus 403 ~at~~~~~~~~~~~d~al~rRf~-~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~p~~a 481 (982)
||||++- .+|.|+.||+. .++|..|+.+++.+||+-++..-... ++-.+..++....+| ...+.
T Consensus 236 gATNRP~-----DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e-----~~vD~~~iA~~t~Gy-----SGSDL 300 (386)
T KOG0737|consen 236 GATNRPF-----DLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLE-----DDVDLDEIAQMTEGY-----SGSDL 300 (386)
T ss_pred eCCCCCc-----cHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccccC-----cccCHHHHHHhcCCC-----cHHHH
Confidence 9999997 89999999996 99999999999999999888763222 222345666664444 45777
Q ss_pred hHHHHHHHHH
Q 002012 482 IDLVDEAAAK 491 (982)
Q Consensus 482 ~~lld~a~~~ 491 (982)
..++..|...
T Consensus 301 kelC~~Aa~~ 310 (386)
T KOG0737|consen 301 KELCRLAALR 310 (386)
T ss_pred HHHHHHHhHh
Confidence 7777666644
No 118
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.69 E-value=3.6e-16 Score=163.63 Aligned_cols=176 Identities=20% Similarity=0.353 Sum_probs=126.6
Q ss_pred hcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCC-c--eEEEecccccccccc
Q 002012 662 HKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTEN-A--LVRIDMSEYMEKHSV 738 (982)
Q Consensus 662 ~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~-~--~v~i~~s~~~~~~~~ 738 (982)
+.++.||+.++..+.+++.+ + -.+++||+||||||||+.|+++|+++|+.+. + +...|.+......
T Consensus 35 ~de~~gQe~vV~~L~~a~~~-~--------~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-- 103 (346)
T KOG0989|consen 35 FDELAGQEHVVQVLKNALLR-R--------ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-- 103 (346)
T ss_pred HHhhcchHHHHHHHHHHHhh-c--------CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc--
Confidence 47899999999999999985 1 2236999999999999999999999987321 1 1222333321110
Q ss_pred ccccCCCCCccccccCCchhHHH------hhCCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEEe
Q 002012 739 SRLVGAPPGYVGYEEGGQLTEVV------RRRPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMT 812 (982)
Q Consensus 739 ~~l~g~~~g~vg~~~~~~l~~~l------~~~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~t 812 (982)
++...- + .+ ..+.... ...++.||+|||.|.|..+.|++|.+.||+.. .+++||+.
T Consensus 104 --vvr~Ki-k-~f---akl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s-----------~~trFiLI 165 (346)
T KOG0989|consen 104 --VVREKI-K-NF---AKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFS-----------RTTRFILI 165 (346)
T ss_pred --chhhhh-c-CH---HHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccc-----------cceEEEEE
Confidence 000000 0 00 0011111 01235799999999999999999999999621 46899999
Q ss_pred cCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHHHHHHHHHhCCC
Q 002012 813 SNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKI 892 (982)
Q Consensus 813 sn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~~~~~~~~~~ 892 (982)
||.... +.+.+.+|| ..+.|+|+..+++.+.++....+ .+
T Consensus 166 cnylsr-------------------------------ii~pi~SRC-~KfrFk~L~d~~iv~rL~~Ia~~-------E~- 205 (346)
T KOG0989|consen 166 CNYLSR-------------------------------IIRPLVSRC-QKFRFKKLKDEDIVDRLEKIASK-------EG- 205 (346)
T ss_pred cCChhh-------------------------------CChHHHhhH-HHhcCCCcchHHHHHHHHHHHHH-------hC-
Confidence 997543 677899999 68999999999998888877665 45
Q ss_pred CccCCHHHHHHHHhc
Q 002012 893 DLHYTKEAVTLLGIL 907 (982)
Q Consensus 893 ~l~i~~~a~~~L~~~ 907 (982)
+.+++++++.++..
T Consensus 206 -v~~d~~al~~I~~~ 219 (346)
T KOG0989|consen 206 -VDIDDDALKLIAKI 219 (346)
T ss_pred -CCCCHHHHHHHHHH
Confidence 88999999999986
No 119
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.69 E-value=6.1e-16 Score=183.10 Aligned_cols=227 Identities=21% Similarity=0.317 Sum_probs=175.0
Q ss_pred ccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccccccccC
Q 002012 664 RVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRLVG 743 (982)
Q Consensus 664 ~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l~g 743 (982)
.++|.+.++..+...+.... .... ++++.|++||||+++|++++........+|+.+||+.+....-.+.++|
T Consensus 135 ~lig~s~~~~~v~~~i~~~a------~~~~-~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~~lfg 207 (463)
T TIGR01818 135 ELIGEAPAMQEVFRAIGRLS------RSDI-TVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFG 207 (463)
T ss_pred ceeecCHHHHHHHHHHHHHh------CcCC-eEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHhcC
Confidence 47788888877777776531 1222 4899999999999999999998876788999999999865444456788
Q ss_pred CCCC-ccccccCCchhHHHhhCCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCChHHHHH
Q 002012 744 APPG-YVGYEEGGQLTEVVRRRPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILE 822 (982)
Q Consensus 744 ~~~g-~vg~~~~~~l~~~l~~~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~i~~ 822 (982)
...+ +.|... ...+.+..+.+++||||||+.+++..|..|+++|++|.+....|......++.||+||+........
T Consensus 208 ~~~~~~~~~~~--~~~g~~~~a~~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~ 285 (463)
T TIGR01818 208 HEKGAFTGANT--RRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVR 285 (463)
T ss_pred CCCCCCCCccc--CCCCcEEECCCCeEEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHHHHH
Confidence 6544 333221 1234456677889999999999999999999999999887655544445678999999987664433
Q ss_pred hhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhcccc-ccccCCCC--hhHHHHHHHHHHHHHHHHHHhCCCCccCCHH
Q 002012 823 TLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDE-YIVFQPLD--SKEISKIVEIQMNRVKDRLKQKKIDLHYTKE 899 (982)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~-ii~F~pl~--~~~l~~il~~~l~~~~~~~~~~~~~l~i~~~ 899 (982)
. +.|+++|++|+.. .|..|||. .+|+..++..+++++...+... ...++++
T Consensus 286 ~------------------------~~f~~~L~~rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~--~~~~~~~ 339 (463)
T TIGR01818 286 Q------------------------GKFREDLFHRLNVIRIHLPPLRERREDIPRLARHFLALAARELDVE--PKLLDPE 339 (463)
T ss_pred c------------------------CCcHHHHHHHhCcceecCCCcccchhhHHHHHHHHHHHHHHHhCCC--CCCcCHH
Confidence 2 4588899999975 78899998 5899999999998876543221 2479999
Q ss_pred HHHHHHhcCCCCCCCchHHHHHHHHHHH
Q 002012 900 AVTLLGILGFDPNFGARPVKRVIQQLVE 927 (982)
Q Consensus 900 a~~~L~~~~~~~~~gaR~L~~~i~~~l~ 927 (982)
+++.|..++|++|. |+|++++++.+.
T Consensus 340 a~~~L~~~~wpgNv--reL~~~~~~~~~ 365 (463)
T TIGR01818 340 ALERLKQLRWPGNV--RQLENLCRWLTV 365 (463)
T ss_pred HHHHHHhCCCCChH--HHHHHHHHHHHH
Confidence 99999999999876 999999998654
No 120
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.69 E-value=7.1e-16 Score=182.25 Aligned_cols=227 Identities=18% Similarity=0.280 Sum_probs=172.2
Q ss_pred ccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccccccccC
Q 002012 664 RVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRLVG 743 (982)
Q Consensus 664 ~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l~g 743 (982)
.++|.+..+..+...+..... ...++++.|++||||+++|+.++......+.+|+.+||..+.+......++|
T Consensus 144 ~ii~~S~~~~~~~~~~~~~a~-------~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg 216 (457)
T PRK11361 144 HILTNSPAMMDICKDTAKIAL-------SQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFG 216 (457)
T ss_pred ceecccHHHhHHHHHHHHHcC-------CCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcC
Confidence 477888777777776665422 1235999999999999999999998776778999999999866544566888
Q ss_pred CCCCc-cccccCCchhHHHhhCCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCChHHHHH
Q 002012 744 APPGY-VGYEEGGQLTEVVRRRPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILE 822 (982)
Q Consensus 744 ~~~g~-vg~~~~~~l~~~l~~~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~i~~ 822 (982)
...+. .|.... -.+.+..+.+++||||||+.+++..|..|+.+++++.+....+......++.||+|||.+...+..
T Consensus 217 ~~~~~~~~~~~~--~~g~~~~a~~gtl~ld~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~~~~~ 294 (457)
T PRK11361 217 HEKGAFTGAQTL--RQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVK 294 (457)
T ss_pred CCCCCCCCCCCC--CCCceEECCCCEEEEechhhCCHHHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHHHHHH
Confidence 75442 222111 133556677889999999999999999999999998876544433344679999999987654433
Q ss_pred hhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhcccc-ccccCCCCh--hHHHHHHHHHHHHHHHHHHhCCCCccCCHH
Q 002012 823 TLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDE-YIVFQPLDS--KEISKIVEIQMNRVKDRLKQKKIDLHYTKE 899 (982)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~-ii~F~pl~~--~~l~~il~~~l~~~~~~~~~~~~~l~i~~~ 899 (982)
. +.|+++++.|+.. .|..|||.. +|+..++..++.++..+... ..+.++++
T Consensus 295 ~------------------------g~~~~~l~~~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~--~~~~~~~~ 348 (457)
T PRK11361 295 E------------------------GTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQR--DIIDIDPM 348 (457)
T ss_pred c------------------------CCchHHHHHHhccceecCCChhhchhhHHHHHHHHHHHHHHHcCC--CCCCcCHH
Confidence 2 4588899999854 578888874 88999999998887654322 12579999
Q ss_pred HHHHHHhcCCCCCCCchHHHHHHHHHHH
Q 002012 900 AVTLLGILGFDPNFGARPVKRVIQQLVE 927 (982)
Q Consensus 900 a~~~L~~~~~~~~~gaR~L~~~i~~~l~ 927 (982)
+++.|..+.|++|. |+|++++++.+.
T Consensus 349 a~~~L~~~~wpgNv--~eL~~~~~~~~~ 374 (457)
T PRK11361 349 AMSLLTAWSWPGNI--RELSNVIERAVV 374 (457)
T ss_pred HHHHHHcCCCCCcH--HHHHHHHHHHHH
Confidence 99999999999876 899999998553
No 121
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.69 E-value=1e-15 Score=171.01 Aligned_cols=182 Identities=23% Similarity=0.284 Sum_probs=133.7
Q ss_pred CCCCcccchHHHHHHHHHhc-----cCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEeccccccccc
Q 002012 267 KLDPVIGRDDEIRRCIQILS-----RRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGTC 341 (982)
Q Consensus 267 ~l~~liG~~~~i~~l~~~L~-----~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~~ 341 (982)
+|+++||+++.++.+..++. .....+++|+||||||||++|+.+|+.+ +..+..++.....
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~----------~~~~~~~~~~~~~---- 67 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEM----------GVNLKITSGPALE---- 67 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHh----------CCCEEEeccchhc----
Confidence 57889999999988877765 2345689999999999999999999988 4555544432221
Q ss_pred ccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCC--------------------CeEE
Q 002012 342 YRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRG--------------------ELRC 401 (982)
Q Consensus 342 ~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g--------------------~i~v 401 (982)
..+ .+...+..+ ..+.||||||+|.+.+ ...+.|..++++. .+.+
T Consensus 68 ~~~----~l~~~l~~~---~~~~vl~iDEi~~l~~--------~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 132 (305)
T TIGR00635 68 KPG----DLAAILTNL---EEGDVLFIDEIHRLSP--------AVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTL 132 (305)
T ss_pred Cch----hHHHHHHhc---ccCCEEEEehHhhhCH--------HHHHHhhHHHhhhheeeeeccCccccceeecCCCeEE
Confidence 111 222333322 3456999999999862 3345566665432 2678
Q ss_pred EEecCchhHhhhhhcChHHHhccc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCCcch
Q 002012 402 IGATTLNEYRNYIEKDPALERRFQ-QVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLPDK 480 (982)
Q Consensus 402 I~at~~~~~~~~~~~d~al~rRf~-~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~p~~ 480 (982)
|++||... .+++++++||. .+.+..|+.+++.++++..... .++.++++++..++..+.++ |..
T Consensus 133 i~~t~~~~-----~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~----~~~~~~~~al~~ia~~~~G~------pR~ 197 (305)
T TIGR00635 133 VGATTRAG-----MLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGL----LNVEIEPEAALEIARRSRGT------PRI 197 (305)
T ss_pred EEecCCcc-----ccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHH----hCCCcCHHHHHHHHHHhCCC------cch
Confidence 88888876 68899999996 6789999999999999877765 57889999999999987754 577
Q ss_pred hhHHHHHHHHHh
Q 002012 481 AIDLVDEAAAKL 492 (982)
Q Consensus 481 a~~lld~a~~~~ 492 (982)
+..+++.+...+
T Consensus 198 ~~~ll~~~~~~a 209 (305)
T TIGR00635 198 ANRLLRRVRDFA 209 (305)
T ss_pred HHHHHHHHHHHH
Confidence 888888765443
No 122
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=5e-16 Score=176.86 Aligned_cols=195 Identities=24% Similarity=0.346 Sum_probs=150.8
Q ss_pred CCCCcccchHHHHHHHHHhcc-------------CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEec
Q 002012 267 KLDPVIGRDDEIRRCIQILSR-------------RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDM 333 (982)
Q Consensus 267 ~l~~liG~~~~i~~l~~~L~~-------------~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~ 333 (982)
..+++-|..+..+.+.+++.- +-+.++|||||||||||.+|.++|... +.+++++.-
T Consensus 665 ~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~----------~~~fisvKG 734 (952)
T KOG0735|consen 665 RWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNS----------NLRFISVKG 734 (952)
T ss_pred CceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhC----------CeeEEEecC
Confidence 445666666555555554422 345689999999999999999999887 889999987
Q ss_pred ccccccccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCC---CchhhHHHHHHhhhcC----CCeEEEEecC
Q 002012 334 ASLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQ---SGAMDASNMLKPMLGR----GELRCIGATT 406 (982)
Q Consensus 334 ~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~---~~~~~~~~~L~~~le~----g~i~vI~at~ 406 (982)
.++. .+|.|..|+.++.+|..++. ..|||||+||+|.+.+.++. +-...+.|.|+..|+. ..+.++++|+
T Consensus 735 PElL--~KyIGaSEq~vR~lF~rA~~-a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTs 811 (952)
T KOG0735|consen 735 PELL--SKYIGASEQNVRDLFERAQS-AKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATS 811 (952)
T ss_pred HHHH--HHHhcccHHHHHHHHHHhhc-cCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecC
Confidence 7887 56999999999999999986 57999999999999988652 2245677888887862 3789999999
Q ss_pred chhHhhhhhcChHHHh--ccc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCCcchhhH
Q 002012 407 LNEYRNYIEKDPALER--RFQ-QVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLPDKAID 483 (982)
Q Consensus 407 ~~~~~~~~~~d~al~r--Rf~-~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~p~~a~~ 483 (982)
+++ -+||||+| |++ .|+++.|+..++.+||+.+...+... ++-.++.++...+ .+..++.-.
T Consensus 812 Rpd-----liDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~-----~~vdl~~~a~~T~-----g~tgADlq~ 876 (952)
T KOG0735|consen 812 RPD-----LIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKD-----TDVDLECLAQKTD-----GFTGADLQS 876 (952)
T ss_pred Ccc-----ccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCc-----cccchHHHhhhcC-----CCchhhHHH
Confidence 999 68999999 997 89999999999999999988764221 2334566666644 445566666
Q ss_pred HHHHHH
Q 002012 484 LVDEAA 489 (982)
Q Consensus 484 lld~a~ 489 (982)
|+-.|.
T Consensus 877 ll~~A~ 882 (952)
T KOG0735|consen 877 LLYNAQ 882 (952)
T ss_pred HHHHHH
Confidence 665554
No 123
>PRK15115 response regulator GlrR; Provisional
Probab=99.68 E-value=8.3e-16 Score=180.89 Aligned_cols=227 Identities=17% Similarity=0.234 Sum_probs=168.8
Q ss_pred ccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccccccccC
Q 002012 664 RVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRLVG 743 (982)
Q Consensus 664 ~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l~g 743 (982)
.++|....+..+.+.+..... ...++++.|++||||+.+|+.+++.....+.+|+.+||..+.+......++|
T Consensus 135 ~lig~s~~~~~~~~~~~~~a~-------~~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~lfg 207 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVAQ-------SDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFG 207 (444)
T ss_pred cccccCHHHHHHHHHHHhhcc-------CCCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHHhcC
Confidence 467777776666655554311 1124999999999999999999998866678999999999865444456777
Q ss_pred CCCCc-cccccCCchhHHHhhCCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCChHHHHH
Q 002012 744 APPGY-VGYEEGGQLTEVVRRRPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILE 822 (982)
Q Consensus 744 ~~~g~-vg~~~~~~l~~~l~~~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~i~~ 822 (982)
...|. .|.... ..+.+..+.+++|||||||.+++..|..|+.+|+++.+....+......++++|+||+........
T Consensus 208 ~~~~~~~~~~~~--~~g~~~~a~~gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~l~~~~~ 285 (444)
T PRK15115 208 HARGAFTGAVSN--REGLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMA 285 (444)
T ss_pred CCcCCCCCCccC--CCCcEEECCCCEEEEEccccCCHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCCHHHHHH
Confidence 76543 222111 223455667789999999999999999999999999875443333334579999999976543332
Q ss_pred hhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhcccc-ccccCCCCh--hHHHHHHHHHHHHHHHHHHhCCCCccCCHH
Q 002012 823 TLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDE-YIVFQPLDS--KEISKIVEIQMNRVKDRLKQKKIDLHYTKE 899 (982)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~-ii~F~pl~~--~~l~~il~~~l~~~~~~~~~~~~~l~i~~~ 899 (982)
++.|+++|+.|+.. .|..|||.. +|+..+++.+++++...... ....++++
T Consensus 286 ------------------------~~~f~~~l~~~l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~--~~~~~~~~ 339 (444)
T PRK15115 286 ------------------------RGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKP--FVRAFSTD 339 (444)
T ss_pred ------------------------cCCccHHHHHhhceeeecCCChHhccccHHHHHHHHHHHHHHHhCC--CCCCcCHH
Confidence 24589999999965 688889975 78999999999886554322 22469999
Q ss_pred HHHHHHhcCCCCCCCchHHHHHHHHHHH
Q 002012 900 AVTLLGILGFDPNFGARPVKRVIQQLVE 927 (982)
Q Consensus 900 a~~~L~~~~~~~~~gaR~L~~~i~~~l~ 927 (982)
+++.|..+.|++|. |+|+++|++.+.
T Consensus 340 a~~~L~~~~WpgNv--reL~~~i~~~~~ 365 (444)
T PRK15115 340 AMKRLMTASWPGNV--RQLVNVIEQCVA 365 (444)
T ss_pred HHHHHHhCCCCChH--HHHHHHHHHHHH
Confidence 99999999999876 999999998543
No 124
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.68 E-value=8.1e-16 Score=183.91 Aligned_cols=205 Identities=21% Similarity=0.227 Sum_probs=158.7
Q ss_pred hhHHHhhcCCCCCcccchHHHHHHHHHhccCCCCCc-EEeCCCCCcHHHHHHHHHHHhhcCCCCC---C-----------
Q 002012 258 DLTELARSGKLDPVIGRDDEIRRCIQILSRRTKNNP-VIIGEPGVGKTAIAEGLAQRIVRGDVPE---T----------- 322 (982)
Q Consensus 258 ~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~i-LL~GppGvGKT~la~~la~~l~~~~~p~---~----------- 322 (982)
-|.++|||.+|+++||+++.++.+.+.+..+...|. ||+||+|+|||++|+.+|+.+.+...+. .
T Consensus 5 ~l~~k~RP~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~ 84 (576)
T PRK14965 5 VLARKYRPQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITE 84 (576)
T ss_pred HHHHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhc
Confidence 478999999999999999999999999887766664 8999999999999999999987543211 0
Q ss_pred CCCCeEEEEecccccccccccccHHHHHHHHHHHHHhc---CCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcC--C
Q 002012 323 LQNRKLISLDMASLVAGTCYRGDFEKRLKAVLKEVTKS---NGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGR--G 397 (982)
Q Consensus 323 l~~~~v~~l~~~~l~~~~~~~g~~e~~l~~l~~~~~~~---~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~--g 397 (982)
.....++.+|..+ .. ..+.++.+++.+... ....|+||||+|+|. ...+|.|+..||. .
T Consensus 85 g~~~d~~eid~~s------~~--~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt--------~~a~naLLk~LEepp~ 148 (576)
T PRK14965 85 GRSVDVFEIDGAS------NT--GVDDIRELRENVKYLPSRSRYKIFIIDEVHMLS--------TNAFNALLKTLEEPPP 148 (576)
T ss_pred CCCCCeeeeeccC------cc--CHHHHHHHHHHHHhccccCCceEEEEEChhhCC--------HHHHHHHHHHHHcCCC
Confidence 0122244444221 11 123355666555422 344699999999996 5677899999985 5
Q ss_pred CeEEEEecCchhHhhhhhcChHHHhccceEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCC
Q 002012 398 ELRCIGATTLNEYRNYIEKDPALERRFQQVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFL 477 (982)
Q Consensus 398 ~i~vI~at~~~~~~~~~~~d~al~rRf~~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~ 477 (982)
.+.+|++||... .+.+.+++||+.+.|..++.+++...|+.++.+ .++.++++++..++..+++-+
T Consensus 149 ~~~fIl~t~~~~-----kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~----egi~i~~~al~~la~~a~G~l----- 214 (576)
T PRK14965 149 HVKFIFATTEPH-----KVPITILSRCQRFDFRRIPLQKIVDRLRYIADQ----EGISISDAALALVARKGDGSM----- 214 (576)
T ss_pred CeEEEEEeCChh-----hhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHH----hCCCCCHHHHHHHHHHcCCCH-----
Confidence 889999998776 678999999999999999999999988888776 689999999999999987543
Q ss_pred cchhhHHHHHHHHHhh
Q 002012 478 PDKAIDLVDEAAAKLK 493 (982)
Q Consensus 478 p~~a~~lld~a~~~~~ 493 (982)
++++.++|.++++..
T Consensus 215 -r~al~~Ldqliay~g 229 (576)
T PRK14965 215 -RDSLSTLDQVLAFCG 229 (576)
T ss_pred -HHHHHHHHHHHHhcc
Confidence 789999998887653
No 125
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.68 E-value=1e-15 Score=178.93 Aligned_cols=204 Identities=21% Similarity=0.238 Sum_probs=154.8
Q ss_pred hhhHHHhhcCCCCCcccchHHHHHHHHHhccCCCCC-cEEeCCCCCcHHHHHHHHHHHhhcCCCCC--C-----------
Q 002012 257 NDLTELARSGKLDPVIGRDDEIRRCIQILSRRTKNN-PVIIGEPGVGKTAIAEGLAQRIVRGDVPE--T----------- 322 (982)
Q Consensus 257 ~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~-iLL~GppGvGKT~la~~la~~l~~~~~p~--~----------- 322 (982)
..|.+++||..|++++|++..++.+.+.+......| +||+||+|+|||++|+.+|+.+.+..... .
T Consensus 4 ~~~~~KyRP~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~ 83 (605)
T PRK05896 4 ITFYRKYRPHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESIN 83 (605)
T ss_pred hhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHH
Confidence 368999999999999999999999999887755555 78999999999999999999987543211 0
Q ss_pred -CCCCeEEEEecccccccccccccHHHHHHHHHHHHHhc---CCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcC--
Q 002012 323 -LQNRKLISLDMASLVAGTCYRGDFEKRLKAVLKEVTKS---NGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGR-- 396 (982)
Q Consensus 323 -l~~~~v~~l~~~~l~~~~~~~g~~e~~l~~l~~~~~~~---~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~-- 396 (982)
.....+++++.++. .| .+.++.+++.+... .+..|++|||+|.|. ..+.+.|+..++.
T Consensus 84 ~~~h~DiieIdaas~------ig--Vd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt--------~~A~NaLLKtLEEPp 147 (605)
T PRK05896 84 TNQSVDIVELDAASN------NG--VDEIRNIIDNINYLPTTFKYKVYIIDEAHMLS--------TSAWNALLKTLEEPP 147 (605)
T ss_pred cCCCCceEEeccccc------cC--HHHHHHHHHHHHhchhhCCcEEEEEechHhCC--------HHHHHHHHHHHHhCC
Confidence 01123455543211 11 22345555544421 334589999999985 4567889898884
Q ss_pred CCeEEEEecCchhHhhhhhcChHHHhccceEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCC
Q 002012 397 GELRCIGATTLNEYRNYIEKDPALERRFQQVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERF 476 (982)
Q Consensus 397 g~i~vI~at~~~~~~~~~~~d~al~rRf~~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~ 476 (982)
+.+.+|++|+... .+.+++++||+.+.+..|+.+++...|+..+.+ .++.++++++..++.++++.
T Consensus 148 ~~tvfIL~Tt~~~-----KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~k----egi~Is~eal~~La~lS~Gd----- 213 (605)
T PRK05896 148 KHVVFIFATTEFQ-----KIPLTIISRCQRYNFKKLNNSELQELLKSIAKK----EKIKIEDNAIDKIADLADGS----- 213 (605)
T ss_pred CcEEEEEECCChH-----hhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCc-----
Confidence 5788888887665 678999999999999999999999999888776 57889999999999998743
Q ss_pred CcchhhHHHHHHHHH
Q 002012 477 LPDKAIDLVDEAAAK 491 (982)
Q Consensus 477 ~p~~a~~lld~a~~~ 491 (982)
+++++.+++..+..
T Consensus 214 -lR~AlnlLekL~~y 227 (605)
T PRK05896 214 -LRDGLSILDQLSTF 227 (605)
T ss_pred -HHHHHHHHHHHHhh
Confidence 47888888886654
No 126
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.68 E-value=1.3e-15 Score=181.21 Aligned_cols=204 Identities=23% Similarity=0.275 Sum_probs=157.8
Q ss_pred hhhHHHhhcCCCCCcccchHHHHHHHHHhccCCCCC-cEEeCCCCCcHHHHHHHHHHHhhcCCC-----CC---------
Q 002012 257 NDLTELARSGKLDPVIGRDDEIRRCIQILSRRTKNN-PVIIGEPGVGKTAIAEGLAQRIVRGDV-----PE--------- 321 (982)
Q Consensus 257 ~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~-iLL~GppGvGKT~la~~la~~l~~~~~-----p~--------- 321 (982)
..|.++|||.+|+++||++..++.+.+.+......| +||+||+|||||++|+.+|+.+.+... |.
T Consensus 12 ~~la~KyRP~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~ 91 (598)
T PRK09111 12 RVLARKYRPQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEH 91 (598)
T ss_pred hhHHhhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHH
Confidence 458999999999999999999999999888766555 889999999999999999999865321 10
Q ss_pred -----CCCCCeEEEEecccccccccccccHHHHHHHHHHHHHhc---CCCeEEEEccchhhhhCCCCCchhhHHHHHHhh
Q 002012 322 -----TLQNRKLISLDMASLVAGTCYRGDFEKRLKAVLKEVTKS---NGQIILFIDELHTIIGAGNQSGAMDASNMLKPM 393 (982)
Q Consensus 322 -----~l~~~~v~~l~~~~l~~~~~~~g~~e~~l~~l~~~~~~~---~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~ 393 (982)
......++.++.++. .| .+.++++++.+... .+..|+||||+|.|. ....|.|+..
T Consensus 92 C~~i~~g~h~Dv~e~~a~s~------~g--vd~IReIie~~~~~P~~a~~KVvIIDEad~Ls--------~~a~naLLKt 155 (598)
T PRK09111 92 CQAIMEGRHVDVLEMDAASH------TG--VDDIREIIESVRYRPVSARYKVYIIDEVHMLS--------TAAFNALLKT 155 (598)
T ss_pred HHHHhcCCCCceEEeccccc------CC--HHHHHHHHHHHHhchhcCCcEEEEEEChHhCC--------HHHHHHHHHH
Confidence 011223444443321 11 23456666655422 345699999999996 4567888888
Q ss_pred hcC--CCeEEEEecCchhHhhhhhcChHHHhccceEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhh
Q 002012 394 LGR--GELRCIGATTLNEYRNYIEKDPALERRFQQVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRY 471 (982)
Q Consensus 394 le~--g~i~vI~at~~~~~~~~~~~d~al~rRf~~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~ 471 (982)
|+. +.+.+|++|+... .+.+.+++||+.+.|..|+.+++...|+.++.+ .++.++++++..++..+.+.
T Consensus 156 LEePp~~~~fIl~tte~~-----kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~k----egi~i~~eAl~lIa~~a~Gd 226 (598)
T PRK09111 156 LEEPPPHVKFIFATTEIR-----KVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAK----EGVEVEDEALALIARAAEGS 226 (598)
T ss_pred HHhCCCCeEEEEEeCChh-----hhhHHHHhheeEEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC
Confidence 885 6788888887665 467889999999999999999999999888876 68999999999999998754
Q ss_pred hccCCCcchhhHHHHHHHHH
Q 002012 472 ITERFLPDKAIDLVDEAAAK 491 (982)
Q Consensus 472 i~~~~~p~~a~~lld~a~~~ 491 (982)
+.++..+++.++++
T Consensus 227 ------lr~al~~Ldkli~~ 240 (598)
T PRK09111 227 ------VRDGLSLLDQAIAH 240 (598)
T ss_pred ------HHHHHHHHHHHHhh
Confidence 48888999888765
No 127
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.67 E-value=3.8e-16 Score=178.16 Aligned_cols=201 Identities=21% Similarity=0.334 Sum_probs=135.6
Q ss_pred hhcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCC----ceEEEe-ccccccc
Q 002012 661 LHKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTEN----ALVRID-MSEYMEK 735 (982)
Q Consensus 661 l~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~----~~v~i~-~s~~~~~ 735 (982)
-+.+++||++++..|..++...+. ...+||+||+|||||++|+.+|+.+.+... ++..++ |..+...
T Consensus 16 ~f~dvVGQe~iv~~L~~~i~~~ri--------~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g 87 (484)
T PRK14956 16 FFRDVIHQDLAIGALQNALKSGKI--------GHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKG 87 (484)
T ss_pred CHHHHhChHHHHHHHHHHHHcCCC--------CeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHcc
Confidence 347899999999999888874321 123899999999999999999999854321 111110 1111100
Q ss_pred cccccccC-CCCCccccccCCchhHHHhh----CCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEE
Q 002012 736 HSVSRLVG-APPGYVGYEEGGQLTEVVRR----RPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVI 810 (982)
Q Consensus 736 ~~~~~l~g-~~~g~vg~~~~~~l~~~l~~----~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI 810 (982)
....++- ......|.+..+.+.+.+.. ..+.|+||||+|.++.+.+++||+.||+- ..+++||
T Consensus 88 -~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEP-----------p~~viFI 155 (484)
T PRK14956 88 -ISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEP-----------PAHIVFI 155 (484)
T ss_pred -CCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcC-----------CCceEEE
Confidence 0001110 00112222222334444432 34579999999999999999999999862 2468999
Q ss_pred EecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHHHHHHHHHhC
Q 002012 811 MTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQK 890 (982)
Q Consensus 811 ~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~~~~~~~~ 890 (982)
++|+.... +.+++++|| ..+.|.+++.+++.+.+...+.. .
T Consensus 156 LaTte~~k-------------------------------I~~TI~SRC-q~~~f~~ls~~~i~~~L~~i~~~-------E 196 (484)
T PRK14956 156 LATTEFHK-------------------------------IPETILSRC-QDFIFKKVPLSVLQDYSEKLCKI-------E 196 (484)
T ss_pred eecCChhh-------------------------------ccHHHHhhh-heeeecCCCHHHHHHHHHHHHHH-------c
Confidence 98885322 788999999 68999999999998888777664 4
Q ss_pred CCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHHH
Q 002012 891 KIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQL 925 (982)
Q Consensus 891 ~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~ 925 (982)
+ +.++++++..|+..+ +.+.|..-+.+++.
T Consensus 197 g--i~~e~eAL~~Ia~~S---~Gd~RdAL~lLeq~ 226 (484)
T PRK14956 197 N--VQYDQEGLFWIAKKG---DGSVRDMLSFMEQA 226 (484)
T ss_pred C--CCCCHHHHHHHHHHc---CChHHHHHHHHHHH
Confidence 4 789999999999863 23456666666553
No 128
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.67 E-value=1.1e-15 Score=179.08 Aligned_cols=201 Identities=25% Similarity=0.279 Sum_probs=153.8
Q ss_pred hHHHhhcCCCCCcccchHHHHHHHHHhccCCCCCc-EEeCCCCCcHHHHHHHHHHHhhcCC-CCC------------CCC
Q 002012 259 LTELARSGKLDPVIGRDDEIRRCIQILSRRTKNNP-VIIGEPGVGKTAIAEGLAQRIVRGD-VPE------------TLQ 324 (982)
Q Consensus 259 l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~i-LL~GppGvGKT~la~~la~~l~~~~-~p~------------~l~ 324 (982)
|.++|||.+|++++|+++.++.+...+......|. ||+|||||||||+|+.+|+.+.+.+ .+. ...
T Consensus 4 l~~KyRP~~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~ 83 (504)
T PRK14963 4 LYQRARPITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGA 83 (504)
T ss_pred HHHhhCCCCHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCC
Confidence 67899999999999999999999998888777777 9999999999999999999986521 110 012
Q ss_pred CCeEEEEecccccccccccccHHHHHHHHHHHHHh---cCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcC--CCe
Q 002012 325 NRKLISLDMASLVAGTCYRGDFEKRLKAVLKEVTK---SNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGR--GEL 399 (982)
Q Consensus 325 ~~~v~~l~~~~l~~~~~~~g~~e~~l~~l~~~~~~---~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~--g~i 399 (982)
...++.++.++ ..+ ...++.+.+.+.. .+.+.|+||||+|.+. .+.++.|+..++. ..+
T Consensus 84 h~dv~el~~~~------~~~--vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls--------~~a~naLLk~LEep~~~t 147 (504)
T PRK14963 84 HPDVLEIDAAS------NNS--VEDVRDLREKVLLAPLRGGRKVYILDEAHMMS--------KSAFNALLKTLEEPPEHV 147 (504)
T ss_pred CCceEEecccc------cCC--HHHHHHHHHHHhhccccCCCeEEEEECccccC--------HHHHHHHHHHHHhCCCCE
Confidence 23455665431 111 2234444444332 2345699999999875 4566778888875 567
Q ss_pred EEEEecCchhHhhhhhcChHHHhccceEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCCcc
Q 002012 400 RCIGATTLNEYRNYIEKDPALERRFQQVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLPD 479 (982)
Q Consensus 400 ~vI~at~~~~~~~~~~~d~al~rRf~~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~p~ 479 (982)
.+|++|+... .+.+.+.+||..+.|..|+.+++...|+.++.+ .|+.++++++..++..+++.+ +
T Consensus 148 ~~Il~t~~~~-----kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~----egi~i~~~Al~~ia~~s~Gdl------R 212 (504)
T PRK14963 148 IFILATTEPE-----KMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEA----EGREAEPEALQLVARLADGAM------R 212 (504)
T ss_pred EEEEEcCChh-----hCChHHhcceEEEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH------H
Confidence 8888887665 688999999999999999999999999988877 688999999999999988554 7
Q ss_pred hhhHHHHHHHH
Q 002012 480 KAIDLVDEAAA 490 (982)
Q Consensus 480 ~a~~lld~a~~ 490 (982)
++..+++..+.
T Consensus 213 ~aln~Lekl~~ 223 (504)
T PRK14963 213 DAESLLERLLA 223 (504)
T ss_pred HHHHHHHHHHh
Confidence 88888887764
No 129
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.67 E-value=1.6e-15 Score=180.78 Aligned_cols=204 Identities=21% Similarity=0.258 Sum_probs=155.6
Q ss_pred hhhHHHhhcCCCCCcccchHHHHHHHHHhccCCCCCc-EEeCCCCCcHHHHHHHHHHHhhcCCCCCC-----------CC
Q 002012 257 NDLTELARSGKLDPVIGRDDEIRRCIQILSRRTKNNP-VIIGEPGVGKTAIAEGLAQRIVRGDVPET-----------LQ 324 (982)
Q Consensus 257 ~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~i-LL~GppGvGKT~la~~la~~l~~~~~p~~-----------l~ 324 (982)
..|.+++||.+|++++|++..++.+...+......|. ||+||+|||||++|+.+|+.+.+...... ..
T Consensus 6 ~~l~~KyRP~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~ 85 (725)
T PRK07133 6 KALYRKYRPKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNN 85 (725)
T ss_pred hhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcC
Confidence 4589999999999999999999999998887666665 89999999999999999999876432110 01
Q ss_pred CCeEEEEecccccccccccccHHHHHHHHHHHHHhc---CCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcC--CCe
Q 002012 325 NRKLISLDMASLVAGTCYRGDFEKRLKAVLKEVTKS---NGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGR--GEL 399 (982)
Q Consensus 325 ~~~v~~l~~~~l~~~~~~~g~~e~~l~~l~~~~~~~---~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~--g~i 399 (982)
...++.++.+ ...| ...++.+++.+... +...|++|||+|.|. ..+++.|+..|+. +.+
T Consensus 86 ~~Dvieidaa------sn~~--vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT--------~~A~NALLKtLEEPP~~t 149 (725)
T PRK07133 86 SLDIIEMDAA------SNNG--VDEIRELIENVKNLPTQSKYKIYIIDEVHMLS--------KSAFNALLKTLEEPPKHV 149 (725)
T ss_pred CCcEEEEecc------ccCC--HHHHHHHHHHHHhchhcCCCEEEEEEChhhCC--------HHHHHHHHHHhhcCCCce
Confidence 1223333321 1111 23355666655532 445699999999986 4577888888884 578
Q ss_pred EEEEecCchhHhhhhhcChHHHhccceEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCCcc
Q 002012 400 RCIGATTLNEYRNYIEKDPALERRFQQVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLPD 479 (982)
Q Consensus 400 ~vI~at~~~~~~~~~~~d~al~rRf~~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~p~ 479 (982)
.+|++|+... .+.+++++||+.+.|..|+.+++...|+..+.+ .++.++++++..++.++++- ++
T Consensus 150 ifILaTte~~-----KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~k----egI~id~eAl~~LA~lS~Gs------lR 214 (725)
T PRK07133 150 IFILATTEVH-----KIPLTILSRVQRFNFRRISEDEIVSRLEFILEK----ENISYEKNALKLIAKLSSGS------LR 214 (725)
T ss_pred EEEEEcCChh-----hhhHHHHhhceeEEccCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC------HH
Confidence 8888888665 678999999999999999999999999887776 57889999999999998743 47
Q ss_pred hhhHHHHHHHHH
Q 002012 480 KAIDLVDEAAAK 491 (982)
Q Consensus 480 ~a~~lld~a~~~ 491 (982)
.+..+++..+..
T Consensus 215 ~AlslLekl~~y 226 (725)
T PRK07133 215 DALSIAEQVSIF 226 (725)
T ss_pred HHHHHHHHHHHh
Confidence 888888876653
No 130
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.67 E-value=1.2e-15 Score=171.30 Aligned_cols=186 Identities=17% Similarity=0.213 Sum_probs=140.3
Q ss_pred hhhHHHhhcCCCCCcccchHHHHHHHHHhccCCCCCcEE-eCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEeccc
Q 002012 257 NDLTELARSGKLDPVIGRDDEIRRCIQILSRRTKNNPVI-IGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMAS 335 (982)
Q Consensus 257 ~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~iLL-~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~ 335 (982)
..|.+++||.+|++++|+++....+...+..+..+|++| +||||+|||++|+++++.+ +..++.++++.
T Consensus 9 ~~w~~kyrP~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~----------~~~~~~i~~~~ 78 (316)
T PHA02544 9 FMWEQKYRPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV----------GAEVLFVNGSD 78 (316)
T ss_pred CcceeccCCCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh----------CccceEeccCc
Confidence 358999999999999999999999998888777677777 7999999999999999987 56777777654
Q ss_pred ccccccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhc--CCCeEEEEecCchhHhhh
Q 002012 336 LVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLG--RGELRCIGATTLNEYRNY 413 (982)
Q Consensus 336 l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le--~g~i~vI~at~~~~~~~~ 413 (982)
. . .......+............+.||||||+|.+.. .+..+.|+.+++ .+.+.+|++++...
T Consensus 79 -~---~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~-------~~~~~~L~~~le~~~~~~~~Ilt~n~~~---- 142 (316)
T PHA02544 79 -C---R-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGL-------ADAQRHLRSFMEAYSKNCSFIITANNKN---- 142 (316)
T ss_pred -c---c-HHHHHHHHHHHHHhhcccCCCeEEEEECcccccC-------HHHHHHHHHHHHhcCCCceEEEEcCChh----
Confidence 1 1 1112222322222221113456999999998721 335567777777 36788999998765
Q ss_pred hhcChHHHhccceEEecCCCHHHHHHHHHHHHHHHhh---hcCCccChHHHHHHHHHhh
Q 002012 414 IEKDPALERRFQQVFCDQPSVENTISILRGLRERYEL---HHGVKISDSALVSAAVLAD 469 (982)
Q Consensus 414 ~~~d~al~rRf~~i~i~~Ps~~e~~~IL~~~~~~~~~---~~~v~i~~~~l~~~~~~s~ 469 (982)
.+.+++++||..+.++.|+.+++..+++.+..++.. ..++.++++++..++..+.
T Consensus 143 -~l~~~l~sR~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~ 200 (316)
T PHA02544 143 -GIIEPLRSRCRVIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNF 200 (316)
T ss_pred -hchHHHHhhceEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcC
Confidence 688999999999999999999999888776665432 4688999999988887755
No 131
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.67 E-value=3.8e-16 Score=181.70 Aligned_cols=186 Identities=19% Similarity=0.277 Sum_probs=129.9
Q ss_pred hhcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCC---------CceEEE-ecc
Q 002012 661 LHKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTE---------NALVRI-DMS 730 (982)
Q Consensus 661 l~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~---------~~~v~i-~~s 730 (982)
-+++|+||+++++.|.+++...+. ...+||+||+|||||++|+.|++.+++.+ .++..+ .|.
T Consensus 14 tFddVIGQe~vv~~L~~al~~gRL--------pHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~ 85 (700)
T PRK12323 14 DFTTLVGQEHVVRALTHALEQQRL--------HHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACT 85 (700)
T ss_pred cHHHHcCcHHHHHHHHHHHHhCCC--------ceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHH
Confidence 357899999999999999985432 12379999999999999999999996521 111111 111
Q ss_pred ccccccccccccCC-CCCccccccCCchhHHHhh----CCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecc
Q 002012 731 EYMEKHSVSRLVGA-PPGYVGYEEGGQLTEVVRR----RPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFT 805 (982)
Q Consensus 731 ~~~~~~~~~~l~g~-~~g~vg~~~~~~l~~~l~~----~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~ 805 (982)
.+. ...+..++.- .....|.++.+.+.+.+.. ..+.|+||||+|+|+...+|.||+.||+- ..
T Consensus 86 ~I~-aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEP-----------P~ 153 (700)
T PRK12323 86 EID-AGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEP-----------PE 153 (700)
T ss_pred HHH-cCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccC-----------CC
Confidence 111 1111111111 1112333333444444433 34689999999999999999999999972 24
Q ss_pred cEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHHHHHH
Q 002012 806 NCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKD 885 (982)
Q Consensus 806 ~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~~~ 885 (982)
+++||++||.... +.+.+++|| ..+.|.+++.+++.+.+...+..
T Consensus 154 ~v~FILaTtep~k-------------------------------LlpTIrSRC-q~f~f~~ls~eei~~~L~~Il~~--- 198 (700)
T PRK12323 154 HVKFILATTDPQK-------------------------------IPVTVLSRC-LQFNLKQMPPGHIVSHLDAILGE--- 198 (700)
T ss_pred CceEEEEeCChHh-------------------------------hhhHHHHHH-HhcccCCCChHHHHHHHHHHHHH---
Confidence 6899999885432 678999999 79999999999998888877764
Q ss_pred HHHhCCCCccCCHHHHHHHHhc
Q 002012 886 RLKQKKIDLHYTKEAVTLLGIL 907 (982)
Q Consensus 886 ~~~~~~~~l~i~~~a~~~L~~~ 907 (982)
.+ +.+++++++.|+..
T Consensus 199 ----Eg--i~~d~eAL~~IA~~ 214 (700)
T PRK12323 199 ----EG--IAHEVNALRLLAQA 214 (700)
T ss_pred ----cC--CCCCHHHHHHHHHH
Confidence 34 67888888888775
No 132
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.67 E-value=1.5e-15 Score=173.30 Aligned_cols=200 Identities=24% Similarity=0.373 Sum_probs=147.6
Q ss_pred cCCCCCcccchHHHHHHHHHhcc-------------CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEE
Q 002012 265 SGKLDPVIGRDDEIRRCIQILSR-------------RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISL 331 (982)
Q Consensus 265 ~~~l~~liG~~~~i~~l~~~L~~-------------~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l 331 (982)
.-.++++.|.++.++.+.+.+.. ..+.++||+||||||||++|+++|..+ +..++.+
T Consensus 118 ~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l----------~~~~~~v 187 (364)
T TIGR01242 118 NVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET----------NATFIRV 187 (364)
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhC----------CCCEEec
Confidence 34567899999999888876531 235679999999999999999999988 6677777
Q ss_pred ecccccccccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCC---CchhhHHHHHHhhh---c----CCCeEE
Q 002012 332 DMASLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQ---SGAMDASNMLKPML---G----RGELRC 401 (982)
Q Consensus 332 ~~~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~---~~~~~~~~~L~~~l---e----~g~i~v 401 (982)
..+.+. ..|.|+....++.+|..+.. ..++||||||+|.+...+.. ++.......+..++ + .+++.+
T Consensus 188 ~~~~l~--~~~~g~~~~~i~~~f~~a~~-~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~v 264 (364)
T TIGR01242 188 VGSELV--RKYIGEGARLVREIFELAKE-KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKV 264 (364)
T ss_pred chHHHH--HHhhhHHHHHHHHHHHHHHh-cCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEE
Confidence 766665 34778888888888887765 56789999999999755332 22233334443433 2 468999
Q ss_pred EEecCchhHhhhhhcChHHHh--ccc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccCh-HHHHHHHHHhhhhhccCCC
Q 002012 402 IGATTLNEYRNYIEKDPALER--RFQ-QVFCDQPSVENTISILRGLRERYELHHGVKISD-SALVSAAVLADRYITERFL 477 (982)
Q Consensus 402 I~at~~~~~~~~~~~d~al~r--Rf~-~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~-~~l~~~~~~s~r~i~~~~~ 477 (982)
|+|||..+ .+|+++.+ ||+ .|.|+.|+.+++.+||+.+..... +.+ ..+..++..+. .+.
T Consensus 265 I~ttn~~~-----~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~------l~~~~~~~~la~~t~-----g~s 328 (364)
T TIGR01242 265 IAATNRPD-----ILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMK------LAEDVDLEAIAKMTE-----GAS 328 (364)
T ss_pred EEecCChh-----hCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCC------CCccCCHHHHHHHcC-----CCC
Confidence 99999987 68999997 886 899999999999999987765532 221 22455666644 456
Q ss_pred cchhhHHHHHHHHHhh
Q 002012 478 PDKAIDLVDEAAAKLK 493 (982)
Q Consensus 478 p~~a~~lld~a~~~~~ 493 (982)
+++...++.+|+..+-
T Consensus 329 g~dl~~l~~~A~~~a~ 344 (364)
T TIGR01242 329 GADLKAICTEAGMFAI 344 (364)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7888888888887654
No 133
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=1.4e-16 Score=164.17 Aligned_cols=171 Identities=25% Similarity=0.384 Sum_probs=138.9
Q ss_pred HHHhhcCCCCCcccchHHHHHHHHHhc-------------cCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCC
Q 002012 260 TELARSGKLDPVIGRDDEIRRCIQILS-------------RRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNR 326 (982)
Q Consensus 260 ~~~~~~~~l~~liG~~~~i~~l~~~L~-------------~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~ 326 (982)
.++++..++.++-|-+..++.+.+.+. -.++.+++|||+||||||.||+++|+.- ..
T Consensus 176 ~eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqT----------SA 245 (440)
T KOG0726|consen 176 VEKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQT----------SA 245 (440)
T ss_pred cccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhccc----------ch
Confidence 345556677788888888887777542 2577899999999999999999999875 66
Q ss_pred eEEEEecccccccccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCC---CCCchhhHHHHHHhhhc-------C
Q 002012 327 KLISLDMASLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAG---NQSGAMDASNMLKPMLG-------R 396 (982)
Q Consensus 327 ~v~~l~~~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~---~~~~~~~~~~~L~~~le-------~ 396 (982)
.|+.+--++++ .+|.|+.....+++|.-+.. +.|+|+||||||.+...+ +++|..+++..++.++. +
T Consensus 246 TFlRvvGseLi--QkylGdGpklvRqlF~vA~e-~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsr 322 (440)
T KOG0726|consen 246 TFLRVVGSELI--QKYLGDGPKLVRELFRVAEE-HAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSR 322 (440)
T ss_pred hhhhhhhHHHH--HHHhccchHHHHHHHHHHHh-cCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCcccc
Confidence 77777777888 56999999999999998876 678999999999987654 34566778777777663 7
Q ss_pred CCeEEEEecCchhHhhhhhcChHHHh--ccc-eEEecCCCHHHHHHHHHHHHHHH
Q 002012 397 GELRCIGATTLNEYRNYIEKDPALER--RFQ-QVFCDQPSVENTISILRGLRERY 448 (982)
Q Consensus 397 g~i~vI~at~~~~~~~~~~~d~al~r--Rf~-~i~i~~Ps~~e~~~IL~~~~~~~ 448 (982)
|++.+|.|||.-+ .+||+|.| |++ .|.|+.|+......|+.....++
T Consensus 323 gDvKvimATnrie-----~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~M 372 (440)
T KOG0726|consen 323 GDVKVIMATNRIE-----TLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRM 372 (440)
T ss_pred CCeEEEEeccccc-----ccCHhhcCCCccccccccCCCchhhhceeEEEeeccc
Confidence 8999999999998 89999999 886 99999999998888886554443
No 134
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.66 E-value=1.5e-15 Score=157.42 Aligned_cols=197 Identities=18% Similarity=0.265 Sum_probs=146.9
Q ss_pred hhcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEecccccccccccc
Q 002012 661 LHKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSR 740 (982)
Q Consensus 661 l~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~ 740 (982)
...+.+||+++++.+.-.|+.++.. ...+-|+||+||||.|||++|..+|..+ +.++.......+..
T Consensus 24 ~l~efiGQ~~vk~~L~ifI~AAk~r----~e~lDHvLl~GPPGlGKTTLA~IIA~Em---gvn~k~tsGp~leK------ 90 (332)
T COG2255 24 TLDEFIGQEKVKEQLQIFIKAAKKR----GEALDHVLLFGPPGLGKTTLAHIIANEL---GVNLKITSGPALEK------ 90 (332)
T ss_pred cHHHhcChHHHHHHHHHHHHHHHhc----CCCcCeEEeeCCCCCcHHHHHHHHHHHh---cCCeEecccccccC------
Confidence 3478999999999999999876543 4556689999999999999999999998 44443322222211
Q ss_pred ccCCCCCccccccCCchhHHHhh-CCCeEEEEccccccCHHHHHHHHHhhhcCceec--CC-----CcEEecccEEEEEe
Q 002012 741 LVGAPPGYVGYEEGGQLTEVVRR-RPYSVVLFDEIEKAHQDVFNILLQLLDDGRITD--SQ-----GRTVSFTNCVVIMT 812 (982)
Q Consensus 741 l~g~~~g~vg~~~~~~l~~~l~~-~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d--~~-----g~~~~~~~~iiI~t 812 (982)
.+.+...+.. .+++|+|||||+.+++.+-+.|+.+||+-++.. +. ...+++....+|.+
T Consensus 91 -------------~gDlaaiLt~Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGA 157 (332)
T COG2255 91 -------------PGDLAAILTNLEEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGA 157 (332)
T ss_pred -------------hhhHHHHHhcCCcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeee
Confidence 1235555543 467899999999999999999999999976542 22 22457788888887
Q ss_pred cCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHHHHHHHHHhCCC
Q 002012 813 SNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKI 892 (982)
Q Consensus 813 sn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~~~~~~~~~~ 892 (982)
|+.... ++.+|.+||..+..+.-|+.+++.+|+...-.. .
T Consensus 158 TTr~G~-------------------------------lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~---------l 197 (332)
T COG2255 158 TTRAGM-------------------------------LTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKI---------L 197 (332)
T ss_pred cccccc-------------------------------ccchhHHhcCCeeeeecCCHHHHHHHHHHHHHH---------h
Confidence 764321 677899999999999999999999999887654 3
Q ss_pred CccCCHHHHHHHHhcC-CCCCCCchHHHHHHH
Q 002012 893 DLHYTKEAVTLLGILG-FDPNFGARPVKRVIQ 923 (982)
Q Consensus 893 ~l~i~~~a~~~L~~~~-~~~~~gaR~L~~~i~ 923 (982)
.+++++++...++..+ -.|....|-|+|+-.
T Consensus 198 ~i~i~~~~a~eIA~rSRGTPRIAnRLLrRVRD 229 (332)
T COG2255 198 GIEIDEEAALEIARRSRGTPRIANRLLRRVRD 229 (332)
T ss_pred CCCCChHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence 3889999888888764 345555566665544
No 135
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=6.5e-16 Score=156.76 Aligned_cols=172 Identities=24% Similarity=0.382 Sum_probs=135.2
Q ss_pred CCCCCcccchHHHHHHHHHh-------------ccCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEe
Q 002012 266 GKLDPVIGRDDEIRRCIQIL-------------SRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLD 332 (982)
Q Consensus 266 ~~l~~liG~~~~i~~l~~~L-------------~~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~ 332 (982)
....++-|-+..|+.+++++ .-+++.++|+|||||||||.+|++.|..- +..++.+-
T Consensus 168 E~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT----------~aTFLKLA 237 (424)
T KOG0652|consen 168 EQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQT----------NATFLKLA 237 (424)
T ss_pred ccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhc----------cchHHHhc
Confidence 35567888888888888754 22577899999999999999999999765 55555554
Q ss_pred cccccccccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCC---CCchhhHHHHHHhhhc-------CCCeEEE
Q 002012 333 MASLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGN---QSGAMDASNMLKPMLG-------RGELRCI 402 (982)
Q Consensus 333 ~~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~---~~~~~~~~~~L~~~le-------~g~i~vI 402 (982)
...++ ..|.|+..+..++.|..++. ..|+|+||||++.+...+. ..|..+++..++.++. ..++.+|
T Consensus 238 gPQLV--QMfIGdGAkLVRDAFaLAKE-kaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKvi 314 (424)
T KOG0652|consen 238 GPQLV--QMFIGDGAKLVRDAFALAKE-KAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVI 314 (424)
T ss_pred chHHH--hhhhcchHHHHHHHHHHhhc-cCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEE
Confidence 44444 45889989999999988876 6789999999999865543 3466778877777764 4589999
Q ss_pred EecCchhHhhhhhcChHHHh--ccc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCc
Q 002012 403 GATTLNEYRNYIEKDPALER--RFQ-QVFCDQPSVENTISILRGLRERYELHHGVK 455 (982)
Q Consensus 403 ~at~~~~~~~~~~~d~al~r--Rf~-~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~ 455 (982)
++||+-+ .+||+|.| |++ .|+|+.|+.+.+..|++....++..+.++.
T Consensus 315 AATNRvD-----iLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvN 365 (424)
T KOG0652|consen 315 AATNRVD-----ILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVN 365 (424)
T ss_pred eeccccc-----ccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCC
Confidence 9999998 79999999 886 999999999999999988777754444443
No 136
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.65 E-value=9e-16 Score=180.57 Aligned_cols=200 Identities=20% Similarity=0.272 Sum_probs=134.9
Q ss_pred hhcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCC----CceEEE-eccccccc
Q 002012 661 LHKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTE----NALVRI-DMSEYMEK 735 (982)
Q Consensus 661 l~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~----~~~v~i-~~s~~~~~ 735 (982)
.+++|+||+++++.|.+++...+ ....+||+||+|||||++|+.|++.+++.. .++..+ +|..+..
T Consensus 14 tFdEVIGQe~Vv~~L~~aL~~gR--------L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~- 84 (830)
T PRK07003 14 DFASLVGQEHVVRALTHALDGGR--------LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDE- 84 (830)
T ss_pred cHHHHcCcHHHHHHHHHHHhcCC--------CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhc-
Confidence 35789999999999999887321 122379999999999999999999996532 122111 1111111
Q ss_pred cccccccC-CCCCccccccCCchhHHHhh----CCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEE
Q 002012 736 HSVSRLVG-APPGYVGYEEGGQLTEVVRR----RPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVI 810 (982)
Q Consensus 736 ~~~~~l~g-~~~g~vg~~~~~~l~~~l~~----~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI 810 (982)
..+..++- ......|.++.+.+.+.+.. ..+.|+||||+|+|+...+|.||+.||+- ..+++||
T Consensus 85 G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEP-----------P~~v~FI 153 (830)
T PRK07003 85 GRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEP-----------PPHVKFI 153 (830)
T ss_pred CCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhc-----------CCCeEEE
Confidence 11111111 01111222222233333332 34689999999999999999999999972 2478999
Q ss_pred EecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHHHHHHHHHhC
Q 002012 811 MTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQK 890 (982)
Q Consensus 811 ~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~~~~~~~~ 890 (982)
++||.... +.+.+++|| ..+.|.+++.+++.+.+...+.. .
T Consensus 154 LaTtd~~K-------------------------------Ip~TIrSRC-q~f~Fk~Ls~eeIv~~L~~Il~~-------E 194 (830)
T PRK07003 154 LATTDPQK-------------------------------IPVTVLSRC-LQFNLKQMPAGHIVSHLERILGE-------E 194 (830)
T ss_pred EEECChhh-------------------------------ccchhhhhe-EEEecCCcCHHHHHHHHHHHHHH-------c
Confidence 99986432 678999999 79999999999999999887765 3
Q ss_pred CCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHH
Q 002012 891 KIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQ 924 (982)
Q Consensus 891 ~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~ 924 (982)
+ +.+++++++.|+..+ .+ +.|...+++++
T Consensus 195 g--I~id~eAL~lIA~~A-~G--smRdALsLLdQ 223 (830)
T PRK07003 195 R--IAFEPQALRLLARAA-QG--SMRDALSLTDQ 223 (830)
T ss_pred C--CCCCHHHHHHHHHHc-CC--CHHHHHHHHHH
Confidence 4 678999999988763 22 23555555444
No 137
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=99.65 E-value=4.5e-14 Score=169.61 Aligned_cols=150 Identities=29% Similarity=0.426 Sum_probs=116.6
Q ss_pred EEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccccccccCC----CCCccccccCCchhHHHhhCCCeEEEE
Q 002012 696 FMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRLVGA----PPGYVGYEEGGQLTEVVRRRPYSVVLF 771 (982)
Q Consensus 696 lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l~g~----~~g~vg~~~~~~l~~~l~~~~~~Vl~l 771 (982)
+|+.||+.+|||++...+|+.. +..|++||-.+..+ .+.++|. ..|...+.+ |.+.+++++.. +|++
T Consensus 891 ~LiQGpTSSGKTSMI~yla~~t---ghkfVRINNHEHTd---lqeYiGTyvTdd~G~lsFkE-GvLVeAlR~Gy--WIVL 961 (4600)
T COG5271 891 LLIQGPTSSGKTSMILYLARET---GHKFVRINNHEHTD---LQEYIGTYVTDDDGSLSFKE-GVLVEALRRGY--WIVL 961 (4600)
T ss_pred EEEecCCCCCcchHHHHHHHHh---CccEEEecCcccch---HHHHhhceeecCCCceeeeh-hHHHHHHhcCc--EEEe
Confidence 9999999999999999999987 88999999887643 4556665 233333333 45888888876 8999
Q ss_pred ccccccCHHHHHHHHHhhhcCc-eecCCCc--EEecccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHh
Q 002012 772 DEIEKAHQDVFNILLQLLDDGR-ITDSQGR--TVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQ 848 (982)
Q Consensus 772 DEidkl~~~~~~~Ll~~le~g~-~~d~~g~--~~~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 848 (982)
||..-++.+++++|.++||+.+ +..|+.. .++..+..+.+|.|++.-.- -++
T Consensus 962 DELNLApTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~Yg-------------------------GRK 1016 (4600)
T COG5271 962 DELNLAPTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYG-------------------------GRK 1016 (4600)
T ss_pred eccccCcHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCcccc-------------------------chH
Confidence 9999999999999999999764 5555533 34558889999999654210 035
Q ss_pred hcChHHHhccccccccCCCChhHHHHHHHHHH
Q 002012 849 TFRPEFLNRIDEYIVFQPLDSKEISKIVEIQM 880 (982)
Q Consensus 849 ~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l 880 (982)
+++.+|.+|| .-+.|....++++..|++..+
T Consensus 1017 ~LSrAFRNRF-lE~hFddipedEle~ILh~rc 1047 (4600)
T COG5271 1017 GLSRAFRNRF-LEMHFDDIPEDELEEILHGRC 1047 (4600)
T ss_pred HHHHHHHhhh-HhhhcccCcHHHHHHHHhccC
Confidence 5778899999 678999999999999987653
No 138
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.65 E-value=1.4e-15 Score=190.49 Aligned_cols=182 Identities=13% Similarity=0.123 Sum_probs=133.3
Q ss_pred CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEeccccccccc--------------------------
Q 002012 288 RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGTC-------------------------- 341 (982)
Q Consensus 288 ~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~~-------------------------- 341 (982)
..++++||+||||||||.+|++||... +.+++.+.++++.....
T Consensus 1628 ~pPKGILLiGPPGTGKTlLAKALA~es----------~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~ 1697 (2281)
T CHL00206 1628 SPSRGILVIGSIGTGRSYLVKYLATNS----------YVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDL 1697 (2281)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHhc----------CCceEEEEHHHHhhccccccccccccccccccccccccccccc
Confidence 456799999999999999999999987 88999998888774310
Q ss_pred -------------ccccHH--HHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhc-------CCCe
Q 002012 342 -------------YRGDFE--KRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLG-------RGEL 399 (982)
Q Consensus 342 -------------~~g~~e--~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le-------~g~i 399 (982)
+.+..+ .+++.+|+.+++ ..||||||||||.+..... .....+.|+..|+ ...|
T Consensus 1698 ~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk-~SPCIIFIDEIDaL~~~ds---~~ltL~qLLneLDg~~~~~s~~~V 1773 (2281)
T CHL00206 1698 DTELLTMMNALTMDMMPKIDRFYITLQFELAKA-MSPCIIWIPNIHDLNVNES---NYLSLGLLVNSLSRDCERCSTRNI 1773 (2281)
T ss_pred chhhhhhcchhhhhhhhhhhHHHHHHHHHHHHH-CCCeEEEEEchhhcCCCcc---ceehHHHHHHHhccccccCCCCCE
Confidence 011112 237888999887 6799999999999975421 1112455555554 2468
Q ss_pred EEEEecCchhHhhhhhcChHHHh--ccc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccChH--HHHHHHHHhhhhhcc
Q 002012 400 RCIGATTLNEYRNYIEKDPALER--RFQ-QVFCDQPSVENTISILRGLRERYELHHGVKISDS--ALVSAAVLADRYITE 474 (982)
Q Consensus 400 ~vI~at~~~~~~~~~~~d~al~r--Rf~-~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~--~l~~~~~~s~r~i~~ 474 (982)
.||||||.++ .+||||.| ||+ .|.|..|+..++.+++..+... .++.+.++ .+..++.. +.
T Consensus 1774 IVIAATNRPD-----~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~t----kg~~L~~~~vdl~~LA~~-----T~ 1839 (2281)
T CHL00206 1774 LVIASTHIPQ-----KVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYT----RGFHLEKKMFHTNGFGSI-----TM 1839 (2281)
T ss_pred EEEEeCCCcc-----cCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhh----cCCCCCcccccHHHHHHh-----CC
Confidence 9999999999 89999999 997 9999999988888888755422 23333322 24555555 55
Q ss_pred CCCcchhhHHHHHHHHHhhhhcc
Q 002012 475 RFLPDKAIDLVDEAAAKLKMEIT 497 (982)
Q Consensus 475 ~~~p~~a~~lld~a~~~~~~~~~ 497 (982)
++.+++...|+.+|+..+..+..
T Consensus 1840 GfSGADLanLvNEAaliAirq~k 1862 (2281)
T CHL00206 1840 GSNARDLVALTNEALSISITQKK 1862 (2281)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCC
Confidence 66789999999999987665543
No 139
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.65 E-value=4.2e-15 Score=168.46 Aligned_cols=204 Identities=24% Similarity=0.323 Sum_probs=146.1
Q ss_pred hhHHHhhcCCCCCcccchHHHHHHHHHhccCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEeccccc
Q 002012 258 DLTELARSGKLDPVIGRDDEIRRCIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLV 337 (982)
Q Consensus 258 ~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~ 337 (982)
.|+++++|..|++++|+++.++.+...+..+..++++|+||||||||++|+++++.+.... .+.+++.++++++.
T Consensus 4 ~w~~ky~P~~~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~-----~~~~~~~i~~~~~~ 78 (337)
T PRK12402 4 LWTEKYRPALLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDP-----WENNFTEFNVADFF 78 (337)
T ss_pred chHHhhCCCcHHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCcc-----cccceEEechhhhh
Confidence 4899999999999999999999999988877667899999999999999999999985432 13456777766543
Q ss_pred cccc-----------cccc-------HHHHHHHHHHHHHhc----CCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhc
Q 002012 338 AGTC-----------YRGD-------FEKRLKAVLKEVTKS----NGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLG 395 (982)
Q Consensus 338 ~~~~-----------~~g~-------~e~~l~~l~~~~~~~----~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le 395 (982)
.... +.+. ....++.++...... ....+|||||+|.+. .+..+.|..+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~--------~~~~~~L~~~le 150 (337)
T PRK12402 79 DQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALR--------EDAQQALRRIME 150 (337)
T ss_pred hcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCC--------HHHHHHHHHHHH
Confidence 1100 0000 122233333333221 223599999999885 344566777776
Q ss_pred C--CCeEEEEecCchhHhhhhhcChHHHhccceEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhc
Q 002012 396 R--GELRCIGATTLNEYRNYIEKDPALERRFQQVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYIT 473 (982)
Q Consensus 396 ~--g~i~vI~at~~~~~~~~~~~d~al~rRf~~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~ 473 (982)
. ....+|.+++... .+.+.+.+|+..+.+.+|+.+++..+++..+.+ .++.++++++..++..+.+.
T Consensus 151 ~~~~~~~~Il~~~~~~-----~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~----~~~~~~~~al~~l~~~~~gd-- 219 (337)
T PRK12402 151 QYSRTCRFIIATRQPS-----KLIPPIRSRCLPLFFRAPTDDELVDVLESIAEA----EGVDYDDDGLELIAYYAGGD-- 219 (337)
T ss_pred hccCCCeEEEEeCChh-----hCchhhcCCceEEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC--
Confidence 3 4466777776554 467889999999999999999999999887776 68889999999999987533
Q ss_pred cCCCcchhhHHHHHHH
Q 002012 474 ERFLPDKAIDLVDEAA 489 (982)
Q Consensus 474 ~~~~p~~a~~lld~a~ 489 (982)
.+.++..++.++
T Consensus 220 ----lr~l~~~l~~~~ 231 (337)
T PRK12402 220 ----LRKAILTLQTAA 231 (337)
T ss_pred ----HHHHHHHHHHHH
Confidence 245555555433
No 140
>PRK04195 replication factor C large subunit; Provisional
Probab=99.65 E-value=1.8e-15 Score=178.71 Aligned_cols=184 Identities=18% Similarity=0.293 Sum_probs=141.9
Q ss_pred hhHHHhhcCCCCCcccchHHHHHHHHHhcc----CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEec
Q 002012 258 DLTELARSGKLDPVIGRDDEIRRCIQILSR----RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDM 333 (982)
Q Consensus 258 ~l~~~~~~~~l~~liG~~~~i~~l~~~L~~----~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~ 333 (982)
+|+++++|.++++++|+++.++.+...+.. ...+++||+||||||||++|+++|+.+ +..++.++.
T Consensus 3 ~W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el----------~~~~ielna 72 (482)
T PRK04195 3 PWVEKYRPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY----------GWEVIELNA 72 (482)
T ss_pred CchhhcCCCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc----------CCCEEEEcc
Confidence 589999999999999999998888877654 226789999999999999999999998 788899987
Q ss_pred ccccccccccccHHHHHHHHHHHHHhc-----CCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCCCeEEEEecCch
Q 002012 334 ASLVAGTCYRGDFEKRLKAVLKEVTKS-----NGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRGELRCIGATTLN 408 (982)
Q Consensus 334 ~~l~~~~~~~g~~e~~l~~l~~~~~~~-----~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g~i~vI~at~~~ 408 (982)
++.... ..+..++...... ..+.||+|||+|.+.+... ....+.|..+++.....+|+++|..
T Consensus 73 sd~r~~--------~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d----~~~~~aL~~~l~~~~~~iIli~n~~ 140 (482)
T PRK04195 73 SDQRTA--------DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNED----RGGARAILELIKKAKQPIILTANDP 140 (482)
T ss_pred cccccH--------HHHHHHHHHhhccCcccCCCCeEEEEecCcccccccc----hhHHHHHHHHHHcCCCCEEEeccCc
Confidence 654311 1233333333221 2466999999999864221 2344567777777777788888765
Q ss_pred hHhhhhhcCh-HHHhccceEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhh
Q 002012 409 EYRNYIEKDP-ALERRFQQVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYI 472 (982)
Q Consensus 409 ~~~~~~~~d~-al~rRf~~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i 472 (982)
. .+.+ .+++||..|.|..|+..++..+|+.++.. .++.++++++..++..+.+.+
T Consensus 141 ~-----~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~----egi~i~~eaL~~Ia~~s~GDl 196 (482)
T PRK04195 141 Y-----DPSLRELRNACLMIEFKRLSTRSIVPVLKRICRK----EGIECDDEALKEIAERSGGDL 196 (482)
T ss_pred c-----ccchhhHhccceEEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH
Confidence 4 4555 78899999999999999999999988876 688999999999999876543
No 141
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=1.2e-15 Score=182.93 Aligned_cols=199 Identities=21% Similarity=0.312 Sum_probs=134.3
Q ss_pred hcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCC----CceEEEe-cccccccc
Q 002012 662 HKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTE----NALVRID-MSEYMEKH 736 (982)
Q Consensus 662 ~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~----~~~v~i~-~s~~~~~~ 736 (982)
+.+|+||+++++.|.+++...+. ...+||+||+|||||++|+++|+.+++.. .++..++ |-.+...
T Consensus 15 FddIIGQe~Iv~~LknaI~~~rl--------~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g- 85 (944)
T PRK14949 15 FEQMVGQSHVLHALTNALTQQRL--------HHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQG- 85 (944)
T ss_pred HHHhcCcHHHHHHHHHHHHhCCC--------CeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcC-
Confidence 47899999999999988874321 12269999999999999999999996531 1221111 1111100
Q ss_pred ccccccC-CCCCccccccCCchhHHHhh----CCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEE
Q 002012 737 SVSRLVG-APPGYVGYEEGGQLTEVVRR----RPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIM 811 (982)
Q Consensus 737 ~~~~l~g-~~~g~vg~~~~~~l~~~l~~----~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~ 811 (982)
....++- ......+.+..+.+.+.+.. ..+.|+||||+|+|+.+.+|.||+.||+- ..+++||+
T Consensus 86 ~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEP-----------P~~vrFIL 154 (944)
T PRK14949 86 RFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEP-----------PEHVKFLL 154 (944)
T ss_pred CCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcc-----------CCCeEEEE
Confidence 0001110 11112232333344444443 34679999999999999999999999972 14678888
Q ss_pred ecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHHHHHHHHHhCC
Q 002012 812 TSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKK 891 (982)
Q Consensus 812 tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~~~~~~~~~ 891 (982)
+|+.... +.+.+++|| .++.|.|++.+++.+.+...+.. .+
T Consensus 155 aTTe~~k-------------------------------Ll~TIlSRC-q~f~fkpLs~eEI~~~L~~il~~-------Eg 195 (944)
T PRK14949 155 ATTDPQK-------------------------------LPVTVLSRC-LQFNLKSLTQDEIGTQLNHILTQ-------EQ 195 (944)
T ss_pred ECCCchh-------------------------------chHHHHHhh-eEEeCCCCCHHHHHHHHHHHHHH-------cC
Confidence 8775432 567899999 79999999999999998887765 23
Q ss_pred CCccCCHHHHHHHHhcCCCCCCCchHHHHHHHH
Q 002012 892 IDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQ 924 (982)
Q Consensus 892 ~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~ 924 (982)
+.+++++++.|+..+ +...|..-+++++
T Consensus 196 --I~~edeAL~lIA~~S---~Gd~R~ALnLLdQ 223 (944)
T PRK14949 196 --LPFEAEALTLLAKAA---NGSMRDALSLTDQ 223 (944)
T ss_pred --CCCCHHHHHHHHHHc---CCCHHHHHHHHHH
Confidence 789999999998862 2234655555544
No 142
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.64 E-value=4.8e-15 Score=175.65 Aligned_cols=203 Identities=21% Similarity=0.201 Sum_probs=153.9
Q ss_pred hhHHHhhcCCCCCcccchHHHHHHHHHhccCCCCC-cEEeCCCCCcHHHHHHHHHHHhhcCCCCCC--------------
Q 002012 258 DLTELARSGKLDPVIGRDDEIRRCIQILSRRTKNN-PVIIGEPGVGKTAIAEGLAQRIVRGDVPET-------------- 322 (982)
Q Consensus 258 ~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~-iLL~GppGvGKT~la~~la~~l~~~~~p~~-------------- 322 (982)
-|..++||..|+++||+++.++.+...+..+...| +||+||+|+|||++|+.+|+.+.+...+..
T Consensus 5 ~l~~kyRP~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~ 84 (563)
T PRK06647 5 GTATKRRPRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDN 84 (563)
T ss_pred HHHHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHc
Confidence 47889999999999999999999999888766666 789999999999999999999975422211
Q ss_pred CCCCeEEEEecccccccccccccHHHHHHHHHHHHHh---cCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcC--C
Q 002012 323 LQNRKLISLDMASLVAGTCYRGDFEKRLKAVLKEVTK---SNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGR--G 397 (982)
Q Consensus 323 l~~~~v~~l~~~~l~~~~~~~g~~e~~l~~l~~~~~~---~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~--g 397 (982)
.....++.++..+ .. ..+.++.+.+.+.. .++..|++|||+|.|. ..++|.|+..++. .
T Consensus 85 ~~~~dv~~idgas------~~--~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls--------~~a~naLLK~LEepp~ 148 (563)
T PRK06647 85 DNSLDVIEIDGAS------NT--SVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS--------NSAFNALLKTIEEPPP 148 (563)
T ss_pred CCCCCeEEecCcc------cC--CHHHHHHHHHHHHhchhcCCCEEEEEEChhhcC--------HHHHHHHHHhhccCCC
Confidence 0112333333111 01 12234444444332 2445699999999996 4567888888985 6
Q ss_pred CeEEEEecCchhHhhhhhcChHHHhccceEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCC
Q 002012 398 ELRCIGATTLNEYRNYIEKDPALERRFQQVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFL 477 (982)
Q Consensus 398 ~i~vI~at~~~~~~~~~~~d~al~rRf~~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~ 477 (982)
.+.+|++|+... .+.+++++||+.+.+..++.+++..+|+..+.. .++.++++++..++..+++.
T Consensus 149 ~~vfI~~tte~~-----kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~----egi~id~eAl~lLa~~s~Gd------ 213 (563)
T PRK06647 149 YIVFIFATTEVH-----KLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLE----DQIKYEDEALKWIAYKSTGS------ 213 (563)
T ss_pred CEEEEEecCChH-----HhHHHHHHhceEEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC------
Confidence 788898887754 578999999999999999999999998877766 58899999999999987743
Q ss_pred cchhhHHHHHHHHH
Q 002012 478 PDKAIDLVDEAAAK 491 (982)
Q Consensus 478 p~~a~~lld~a~~~ 491 (982)
++.+..+++.+++.
T Consensus 214 lR~alslLdklis~ 227 (563)
T PRK06647 214 VRDAYTLFDQVVSF 227 (563)
T ss_pred HHHHHHHHHHHHhh
Confidence 47889999887765
No 143
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.64 E-value=1.1e-15 Score=175.49 Aligned_cols=206 Identities=23% Similarity=0.283 Sum_probs=163.0
Q ss_pred hhhHHHhhcCCCCCcccchHHHHHHHHHhccCCCCC-cEEeCCCCCcHHHHHHHHHHHhhcCCCCCC------------C
Q 002012 257 NDLTELARSGKLDPVIGRDDEIRRCIQILSRRTKNN-PVIIGEPGVGKTAIAEGLAQRIVRGDVPET------------L 323 (982)
Q Consensus 257 ~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~-iLL~GppGvGKT~la~~la~~l~~~~~p~~------------l 323 (982)
..|..+|||..|++++|+++.++.+.+++....-.| .+|.||-||||||+|+.+|+.+.+...+.. .
T Consensus 4 q~L~rKyRP~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~ 83 (515)
T COG2812 4 QVLARKYRPKTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEIN 83 (515)
T ss_pred HHHHHHhCcccHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhh
Confidence 357889999999999999999999999987765555 678899999999999999999987643211 0
Q ss_pred CC--CeEEEEecccccccccccccHHHHHHHHHHHHHhc---CCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhc--C
Q 002012 324 QN--RKLISLDMASLVAGTCYRGDFEKRLKAVLKEVTKS---NGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLG--R 396 (982)
Q Consensus 324 ~~--~~v~~l~~~~l~~~~~~~g~~e~~l~~l~~~~~~~---~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le--~ 396 (982)
.| ..++++|.. +.. ..+.++.+.+.+.-. .++-|++|||+|+|. ..+.|.|+..+| .
T Consensus 84 ~g~~~DviEiDaA------Sn~--gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS--------~~afNALLKTLEEPP 147 (515)
T COG2812 84 EGSLIDVIEIDAA------SNT--GVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS--------KQAFNALLKTLEEPP 147 (515)
T ss_pred cCCcccchhhhhh------hcc--ChHHHHHHHHHhccCCccccceEEEEecHHhhh--------HHHHHHHhcccccCc
Confidence 01 122222211 111 234466777766532 455699999999997 667788888887 4
Q ss_pred CCeEEEEecCchhHhhhhhcChHHHhccceEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCC
Q 002012 397 GELRCIGATTLNEYRNYIEKDPALERRFQQVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERF 476 (982)
Q Consensus 397 g~i~vI~at~~~~~~~~~~~d~al~rRf~~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~ 476 (982)
.+|.+|.+||... .+++.+.+||+...+...+.+++...|..++.+ .++.++++++..++..+++-
T Consensus 148 ~hV~FIlATTe~~-----Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~----E~I~~e~~aL~~ia~~a~Gs----- 213 (515)
T COG2812 148 SHVKFILATTEPQ-----KIPNTILSRCQRFDFKRLDLEEIAKHLAAILDK----EGINIEEDALSLIARAAEGS----- 213 (515)
T ss_pred cCeEEEEecCCcC-----cCchhhhhccccccccCCCHHHHHHHHHHHHHh----cCCccCHHHHHHHHHHcCCC-----
Confidence 5899999999998 899999999999999999999999999888887 79999999999999998754
Q ss_pred CcchhhHHHHHHHHHhh
Q 002012 477 LPDKAIDLVDEAAAKLK 493 (982)
Q Consensus 477 ~p~~a~~lld~a~~~~~ 493 (982)
.+++..++|.+.+...
T Consensus 214 -~RDalslLDq~i~~~~ 229 (515)
T COG2812 214 -LRDALSLLDQAIAFGE 229 (515)
T ss_pred -hhhHHHHHHHHHHccC
Confidence 3889999999998754
No 144
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=6.3e-15 Score=172.12 Aligned_cols=204 Identities=24% Similarity=0.252 Sum_probs=152.1
Q ss_pred hhhHHHhhcCCCCCcccchHHHHHHHHHhccCCCCCc-EEeCCCCCcHHHHHHHHHHHhhcCCCCCC-------------
Q 002012 257 NDLTELARSGKLDPVIGRDDEIRRCIQILSRRTKNNP-VIIGEPGVGKTAIAEGLAQRIVRGDVPET------------- 322 (982)
Q Consensus 257 ~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~i-LL~GppGvGKT~la~~la~~l~~~~~p~~------------- 322 (982)
.+|..++||..|++++|+++.++.+.+.+..+...|. ||+||+|+|||++|+.+|+.+.+......
T Consensus 4 ~~~~~kyRP~~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~ 83 (486)
T PRK14953 4 IPFARKYRPKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEID 83 (486)
T ss_pred hHHHHhhCCCcHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHh
Confidence 3789999999999999999999999999988777775 68999999999999999999864211110
Q ss_pred -CCCCeEEEEecccccccccccccHHHHHHHHHHHHHh---cCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcC--
Q 002012 323 -LQNRKLISLDMASLVAGTCYRGDFEKRLKAVLKEVTK---SNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGR-- 396 (982)
Q Consensus 323 -l~~~~v~~l~~~~l~~~~~~~g~~e~~l~~l~~~~~~---~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~-- 396 (982)
.....++.+|.++ ..| ...++.+.+.+.. .+...|++|||+|.+. ..+.+.|+..++.
T Consensus 84 ~g~~~d~~eidaas------~~g--vd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt--------~~a~naLLk~LEepp 147 (486)
T PRK14953 84 KGSFPDLIEIDAAS------NRG--IDDIRALRDAVSYTPIKGKYKVYIIDEAHMLT--------KEAFNALLKTLEEPP 147 (486)
T ss_pred cCCCCcEEEEeCcc------CCC--HHHHHHHHHHHHhCcccCCeeEEEEEChhhcC--------HHHHHHHHHHHhcCC
Confidence 0112344444321 112 1223344444432 2345699999999985 4566788888874
Q ss_pred CCeEEEEecCchhHhhhhhcChHHHhccceEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCC
Q 002012 397 GELRCIGATTLNEYRNYIEKDPALERRFQQVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERF 476 (982)
Q Consensus 397 g~i~vI~at~~~~~~~~~~~d~al~rRf~~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~ 476 (982)
..+.+|.+|+... .+.+++.+||+.+.+.+|+.+++..+|+.++.. .++.++++++..++..+++.
T Consensus 148 ~~~v~Il~tt~~~-----kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~----egi~id~~al~~La~~s~G~----- 213 (486)
T PRK14953 148 PRTIFILCTTEYD-----KIPPTILSRCQRFIFSKPTKEQIKEYLKRICNE----EKIEYEEKALDLLAQASEGG----- 213 (486)
T ss_pred CCeEEEEEECCHH-----HHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC-----
Confidence 4677777776554 567899999999999999999999999888776 57899999999999987743
Q ss_pred CcchhhHHHHHHHHH
Q 002012 477 LPDKAIDLVDEAAAK 491 (982)
Q Consensus 477 ~p~~a~~lld~a~~~ 491 (982)
++.+.++++.++.+
T Consensus 214 -lr~al~~Ldkl~~~ 227 (486)
T PRK14953 214 -MRDAASLLDQASTY 227 (486)
T ss_pred -HHHHHHHHHHHHHh
Confidence 47888888888754
No 145
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=7.6e-16 Score=156.74 Aligned_cols=199 Identities=22% Similarity=0.324 Sum_probs=151.2
Q ss_pred CCCCCcccchHHHHHHHHHhc-------------cCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEe
Q 002012 266 GKLDPVIGRDDEIRRCIQILS-------------RRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLD 332 (982)
Q Consensus 266 ~~l~~liG~~~~i~~l~~~L~-------------~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~ 332 (982)
-+..++-|-.+.|+.+.+++. -.++.++|+|||||||||.+|+++|++- +.-++.+-
T Consensus 174 vty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt----------dacfirvi 243 (435)
T KOG0729|consen 174 VTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT----------DACFIRVI 243 (435)
T ss_pred cccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc----------CceEEeeh
Confidence 356677777788877777542 2467899999999999999999999986 78888888
Q ss_pred cccccccccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCC---CchhhHHHHHHhhhc-------CCCeEEE
Q 002012 333 MASLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQ---SGAMDASNMLKPMLG-------RGELRCI 402 (982)
Q Consensus 333 ~~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~---~~~~~~~~~L~~~le-------~g~i~vI 402 (982)
-+.++ .+|.|+.....+++|+.++. ..-||+|+|||+.+.+++-. ++..+++..++.++. +|+|.++
T Consensus 244 gselv--qkyvgegarmvrelf~mart-kkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvl 320 (435)
T KOG0729|consen 244 GSELV--QKYVGEGARMVRELFEMART-KKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVL 320 (435)
T ss_pred hHHHH--HHHhhhhHHHHHHHHHHhcc-cceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEE
Confidence 78888 56999999999999998775 56789999999999877543 344567666666653 7999999
Q ss_pred EecCchhHhhhhhcChHHHh--ccc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCCcc
Q 002012 403 GATTLNEYRNYIEKDPALER--RFQ-QVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLPD 479 (982)
Q Consensus 403 ~at~~~~~~~~~~~d~al~r--Rf~-~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~p~ 479 (982)
.+||.++ .+||+|.| |++ .|+|..|+.+-+..|++.....+....++. .+.++.++.. ....
T Consensus 321 matnrpd-----tldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir-----~ellarlcpn-----stga 385 (435)
T KOG0729|consen 321 MATNRPD-----TLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIR-----FELLARLCPN-----STGA 385 (435)
T ss_pred eecCCCC-----CcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchh-----HHHHHhhCCC-----Ccch
Confidence 9999999 79999999 886 999999999999999876555433222221 2344555432 2235
Q ss_pred hhhHHHHHHHHHh
Q 002012 480 KAIDLVDEAAAKL 492 (982)
Q Consensus 480 ~a~~lld~a~~~~ 492 (982)
....++-+|...+
T Consensus 386 eirsvcteagmfa 398 (435)
T KOG0729|consen 386 EIRSVCTEAGMFA 398 (435)
T ss_pred HHHHHHHHhhHHH
Confidence 5666666666543
No 146
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.64 E-value=6.8e-15 Score=170.91 Aligned_cols=204 Identities=21% Similarity=0.217 Sum_probs=151.0
Q ss_pred hhhHHHhhcCCCCCcccchHHHHHHHHHhccCCCCC-cEEeCCCCCcHHHHHHHHHHHhhcCCCCCC-------------
Q 002012 257 NDLTELARSGKLDPVIGRDDEIRRCIQILSRRTKNN-PVIIGEPGVGKTAIAEGLAQRIVRGDVPET------------- 322 (982)
Q Consensus 257 ~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~-iLL~GppGvGKT~la~~la~~l~~~~~p~~------------- 322 (982)
..|++++||..|+++||+++.+..+.+.+..+...| +||+||||+|||++|+.+|+.+.+......
T Consensus 5 ~~~~~kyRP~~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i 84 (451)
T PRK06305 5 QVSSRKYRPQTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEI 84 (451)
T ss_pred HHHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHH
Confidence 358999999999999999999999999887766555 789999999999999999999865321100
Q ss_pred --CCCCeEEEEecccccccccccccHHHHHHHHHHHHH---hcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcC-
Q 002012 323 --LQNRKLISLDMASLVAGTCYRGDFEKRLKAVLKEVT---KSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGR- 396 (982)
Q Consensus 323 --l~~~~v~~l~~~~l~~~~~~~g~~e~~l~~l~~~~~---~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~- 396 (982)
.....++.++.. ...| .+.++.+.+.+. ......|+||||+|.+. ...++.|+.+++.
T Consensus 85 ~~~~~~d~~~i~g~------~~~g--id~ir~i~~~l~~~~~~~~~kvvIIdead~lt--------~~~~n~LLk~lEep 148 (451)
T PRK06305 85 SSGTSLDVLEIDGA------SHRG--IEDIRQINETVLFTPSKSRYKIYIIDEVHMLT--------KEAFNSLLKTLEEP 148 (451)
T ss_pred hcCCCCceEEeecc------ccCC--HHHHHHHHHHHHhhhhcCCCEEEEEecHHhhC--------HHHHHHHHHHhhcC
Confidence 011223344321 1121 122333333222 12455699999999996 4567888888885
Q ss_pred -CCeEEEEecCchhHhhhhhcChHHHhccceEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccC
Q 002012 397 -GELRCIGATTLNEYRNYIEKDPALERRFQQVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITER 475 (982)
Q Consensus 397 -g~i~vI~at~~~~~~~~~~~d~al~rRf~~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~ 475 (982)
+.+.+|++|+... .+.+++++||..+.+..++.+++...|+...++ .++.++++++..++..+++.
T Consensus 149 ~~~~~~Il~t~~~~-----kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~----eg~~i~~~al~~L~~~s~gd---- 215 (451)
T PRK06305 149 PQHVKFFLATTEIH-----KIPGTILSRCQKMHLKRIPEETIIDKLALIAKQ----EGIETSREALLPIARAAQGS---- 215 (451)
T ss_pred CCCceEEEEeCChH-----hcchHHHHhceEEeCCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC----
Confidence 6788888887654 678999999999999999999999988877766 58889999999999998743
Q ss_pred CCcchhhHHHHHHHHH
Q 002012 476 FLPDKAIDLVDEAAAK 491 (982)
Q Consensus 476 ~~p~~a~~lld~a~~~ 491 (982)
.+.+..+++.....
T Consensus 216 --lr~a~~~Lekl~~~ 229 (451)
T PRK06305 216 --LRDAESLYDYVVGL 229 (451)
T ss_pred --HHHHHHHHHHHHHh
Confidence 36788888876654
No 147
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=5.3e-15 Score=170.24 Aligned_cols=204 Identities=20% Similarity=0.187 Sum_probs=151.0
Q ss_pred hhHHHhhcCCCCCcccchHHHHHHHHHhccCCCCC-cEEeCCCCCcHHHHHHHHHHHhhcCCCCC-----------C---
Q 002012 258 DLTELARSGKLDPVIGRDDEIRRCIQILSRRTKNN-PVIIGEPGVGKTAIAEGLAQRIVRGDVPE-----------T--- 322 (982)
Q Consensus 258 ~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~-iLL~GppGvGKT~la~~la~~l~~~~~p~-----------~--- 322 (982)
-|++++||.+|+++||++..++.+...+..+..+| +||+||||||||++|+.+|+.+.+..... .
T Consensus 5 ~l~~k~RP~~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c 84 (397)
T PRK14955 5 VIARKYRPKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGEC 84 (397)
T ss_pred HHHHhcCCCcHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCC
Confidence 47899999999999999999999999888766666 88999999999999999999996632110 0
Q ss_pred --------CCCCeEEEEecccccccccccccHHHHHHHHHHHHHh---cCCCeEEEEccchhhhhCCCCCchhhHHHHHH
Q 002012 323 --------LQNRKLISLDMASLVAGTCYRGDFEKRLKAVLKEVTK---SNGQIILFIDELHTIIGAGNQSGAMDASNMLK 391 (982)
Q Consensus 323 --------l~~~~v~~l~~~~l~~~~~~~g~~e~~l~~l~~~~~~---~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~ 391 (982)
.....++.++... . ...+.++.+.+.+.. .+...|+||||+|.+. ...++.|+
T Consensus 85 ~~c~~~~~~~~~n~~~~~~~~------~--~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~--------~~~~~~LL 148 (397)
T PRK14955 85 ESCRDFDAGTSLNISEFDAAS------N--NSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLS--------IAAFNAFL 148 (397)
T ss_pred HHHHHHhcCCCCCeEeecccc------c--CCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCC--------HHHHHHHH
Confidence 0011233333211 0 112345555555531 1344699999999986 34567788
Q ss_pred hhhcC--CCeEEEEecCchhHhhhhhcChHHHhccceEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhh
Q 002012 392 PMLGR--GELRCIGATTLNEYRNYIEKDPALERRFQQVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLAD 469 (982)
Q Consensus 392 ~~le~--g~i~vI~at~~~~~~~~~~~d~al~rRf~~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~ 469 (982)
..+++ ....+|++|+... .+.+++++||..+.+..++.+++...++..... .++.++++++..++..++
T Consensus 149 k~LEep~~~t~~Il~t~~~~-----kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~----~g~~i~~~al~~l~~~s~ 219 (397)
T PRK14955 149 KTLEEPPPHAIFIFATTELH-----KIPATIASRCQRFNFKRIPLEEIQQQLQGICEA----EGISVDADALQLIGRKAQ 219 (397)
T ss_pred HHHhcCCCCeEEEEEeCChH-----HhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcC
Confidence 88875 4677777776543 567899999999999999999998888877765 588999999999999987
Q ss_pred hhhccCCCcchhhHHHHHHHHHh
Q 002012 470 RYITERFLPDKAIDLVDEAAAKL 492 (982)
Q Consensus 470 r~i~~~~~p~~a~~lld~a~~~~ 492 (982)
+. ++.+...++....++
T Consensus 220 g~------lr~a~~~L~kl~~~~ 236 (397)
T PRK14955 220 GS------MRDAQSILDQVIAFS 236 (397)
T ss_pred CC------HHHHHHHHHHHHHhc
Confidence 54 377888888777654
No 148
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=4.5e-15 Score=174.32 Aligned_cols=199 Identities=20% Similarity=0.294 Sum_probs=135.4
Q ss_pred hcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCC----ceEEE-ecccccccc
Q 002012 662 HKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTEN----ALVRI-DMSEYMEKH 736 (982)
Q Consensus 662 ~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~----~~v~i-~~s~~~~~~ 736 (982)
+.+|+||+++++.|.+++...+. ...+||+||+|||||++|+++|+.+++... ++-.+ .|..+. ..
T Consensus 15 f~divGq~~v~~~L~~~~~~~~l--------~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~-~g 85 (509)
T PRK14958 15 FQEVIGQAPVVRALSNALDQQYL--------HHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREID-EG 85 (509)
T ss_pred HHHhcCCHHHHHHHHHHHHhCCC--------CeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHh-cC
Confidence 47899999999999999975322 123899999999999999999999965321 11111 011110 00
Q ss_pred ccccccC-CCCCccccccCCchhHHHhh----CCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEE
Q 002012 737 SVSRLVG-APPGYVGYEEGGQLTEVVRR----RPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIM 811 (982)
Q Consensus 737 ~~~~l~g-~~~g~vg~~~~~~l~~~l~~----~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~ 811 (982)
.+..++- ...+..+.++.+.+.+.+.. ..+.|+||||+|+++++.+|+|++.||+- ..+++||+
T Consensus 86 ~~~d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEep-----------p~~~~fIl 154 (509)
T PRK14958 86 RFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEP-----------PSHVKFIL 154 (509)
T ss_pred CCceEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhcc-----------CCCeEEEE
Confidence 1111111 11122333333334444433 34679999999999999999999999972 24688888
Q ss_pred ecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHHHHHHHHHhCC
Q 002012 812 TSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKK 891 (982)
Q Consensus 812 tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~~~~~~~~~ 891 (982)
+|+.... +.+.+.+|| ..+.|.|++.+++.+.+...+++ .+
T Consensus 155 attd~~k-------------------------------l~~tI~SRc-~~~~f~~l~~~~i~~~l~~il~~-------eg 195 (509)
T PRK14958 155 ATTDHHK-------------------------------LPVTVLSRC-LQFHLAQLPPLQIAAHCQHLLKE-------EN 195 (509)
T ss_pred EECChHh-------------------------------chHHHHHHh-hhhhcCCCCHHHHHHHHHHHHHH-------cC
Confidence 8864321 566799999 78999999999999888877765 44
Q ss_pred CCccCCHHHHHHHHhcCCCCCCCchHHHHHHHH
Q 002012 892 IDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQ 924 (982)
Q Consensus 892 ~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~ 924 (982)
+.+++++++.|+..+ . .+.|...+.+++
T Consensus 196 --i~~~~~al~~ia~~s-~--GslR~al~lLdq 223 (509)
T PRK14958 196 --VEFENAALDLLARAA-N--GSVRDALSLLDQ 223 (509)
T ss_pred --CCCCHHHHHHHHHHc-C--CcHHHHHHHHHH
Confidence 678999999998863 2 235666666655
No 149
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=1.5e-14 Score=172.36 Aligned_cols=204 Identities=20% Similarity=0.197 Sum_probs=152.9
Q ss_pred hhHHHhhcCCCCCcccchHHHHHHHHHhccCCCCC-cEEeCCCCCcHHHHHHHHHHHhhcCCC---C-------C-----
Q 002012 258 DLTELARSGKLDPVIGRDDEIRRCIQILSRRTKNN-PVIIGEPGVGKTAIAEGLAQRIVRGDV---P-------E----- 321 (982)
Q Consensus 258 ~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~-iLL~GppGvGKT~la~~la~~l~~~~~---p-------~----- 321 (982)
-+.+++||.+|+++||++..++.+.+.+..+...| +||+||+||||||+|+.+|+.+.+... | .
T Consensus 5 ~l~~kyRP~~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C 84 (620)
T PRK14954 5 VIARKYRPSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGEC 84 (620)
T ss_pred HHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccC
Confidence 47889999999999999999999999887766666 789999999999999999999976321 1 0
Q ss_pred -------CCCCCeEEEEecccccccccccccHHHHHHHHHHHHHh---cCCCeEEEEccchhhhhCCCCCchhhHHHHHH
Q 002012 322 -------TLQNRKLISLDMASLVAGTCYRGDFEKRLKAVLKEVTK---SNGQIILFIDELHTIIGAGNQSGAMDASNMLK 391 (982)
Q Consensus 322 -------~l~~~~v~~l~~~~l~~~~~~~g~~e~~l~~l~~~~~~---~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~ 391 (982)
......++.++... ..+ .+.++.+.+.+.. .+..-|++|||+|.+. ...+|.|+
T Consensus 85 ~sC~~~~~g~~~n~~~~d~~s------~~~--vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt--------~~a~naLL 148 (620)
T PRK14954 85 ESCRDFDAGTSLNISEFDAAS------NNS--VDDIRQLRENVRYGPQKGRYRVYIIDEVHMLS--------TAAFNAFL 148 (620)
T ss_pred HHHHHHhccCCCCeEEecccc------cCC--HHHHHHHHHHHHhhhhcCCCEEEEEeChhhcC--------HHHHHHHH
Confidence 01112233333211 111 2345555555531 1344599999999986 45678899
Q ss_pred hhhcC--CCeEEEEecCchhHhhhhhcChHHHhccceEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhh
Q 002012 392 PMLGR--GELRCIGATTLNEYRNYIEKDPALERRFQQVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLAD 469 (982)
Q Consensus 392 ~~le~--g~i~vI~at~~~~~~~~~~~d~al~rRf~~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~ 469 (982)
..++. +.+.+|++|+... .+.+++++||+.+.|..++.+++...++.+... .++.++++++..++..++
T Consensus 149 K~LEePp~~tv~IL~t~~~~-----kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~----egi~I~~eal~~La~~s~ 219 (620)
T PRK14954 149 KTLEEPPPHAIFIFATTELH-----KIPATIASRCQRFNFKRIPLDEIQSQLQMICRA----EGIQIDADALQLIARKAQ 219 (620)
T ss_pred HHHhCCCCCeEEEEEeCChh-----hhhHHHHhhceEEecCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHhC
Confidence 99986 5678888776543 677899999999999999999988888877765 588899999999999987
Q ss_pred hhhccCCCcchhhHHHHHHHHHh
Q 002012 470 RYITERFLPDKAIDLVDEAAAKL 492 (982)
Q Consensus 470 r~i~~~~~p~~a~~lld~a~~~~ 492 (982)
+.+ +.+...++..++++
T Consensus 220 Gdl------r~al~eLeKL~~y~ 236 (620)
T PRK14954 220 GSM------RDAQSILDQVIAFS 236 (620)
T ss_pred CCH------HHHHHHHHHHHHhc
Confidence 554 77888888777664
No 150
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.62 E-value=2e-14 Score=164.18 Aligned_cols=204 Identities=24% Similarity=0.282 Sum_probs=151.6
Q ss_pred hhhHHHhhcCCCCCcccchHHHHHHHHHhccCCCCC-cEEeCCCCCcHHHHHHHHHHHhhcCCCCCC-------------
Q 002012 257 NDLTELARSGKLDPVIGRDDEIRRCIQILSRRTKNN-PVIIGEPGVGKTAIAEGLAQRIVRGDVPET------------- 322 (982)
Q Consensus 257 ~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~-iLL~GppGvGKT~la~~la~~l~~~~~p~~------------- 322 (982)
.+|.+++||..++++||+++.++.+.+.+..+..+| +||+||||+|||++|+.+++.+.+...+..
T Consensus 2 ~~~~~~~rp~~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~ 81 (355)
T TIGR02397 2 QVLARKYRPQTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEIN 81 (355)
T ss_pred ccHHHHhCCCcHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHh
Confidence 468999999999999999999999999887765555 688999999999999999999865432111
Q ss_pred -CCCCeEEEEecccccccccccccHHHHHHHHHHHHHhc---CCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcC--
Q 002012 323 -LQNRKLISLDMASLVAGTCYRGDFEKRLKAVLKEVTKS---NGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGR-- 396 (982)
Q Consensus 323 -l~~~~v~~l~~~~l~~~~~~~g~~e~~l~~l~~~~~~~---~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~-- 396 (982)
.....++.++... . .....++.+++.+... +++.|++|||+|.+. ....+.|+..++.
T Consensus 82 ~~~~~~~~~~~~~~------~--~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~--------~~~~~~Ll~~le~~~ 145 (355)
T TIGR02397 82 SGSSLDVIEIDAAS------N--NGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLS--------KSAFNALLKTLEEPP 145 (355)
T ss_pred cCCCCCEEEeeccc------c--CCHHHHHHHHHHHhcCcccCCceEEEEeChhhcC--------HHHHHHHHHHHhCCc
Confidence 0123344554321 1 1122355666655432 344599999999885 3456777777774
Q ss_pred CCeEEEEecCchhHhhhhhcChHHHhccceEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCC
Q 002012 397 GELRCIGATTLNEYRNYIEKDPALERRFQQVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERF 476 (982)
Q Consensus 397 g~i~vI~at~~~~~~~~~~~d~al~rRf~~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~ 476 (982)
..+.+|++|+... .+.+++++||..+.+..|+.+++..+++....+ .++.++++++..++..+++
T Consensus 146 ~~~~lIl~~~~~~-----~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~----~g~~i~~~a~~~l~~~~~g------ 210 (355)
T TIGR02397 146 EHVVFILATTEPH-----KIPATILSRCQRFDFKRIPLEDIVERLKKILDK----EGIKIEDEALELIARAADG------ 210 (355)
T ss_pred cceeEEEEeCCHH-----HHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCC------
Confidence 5677788877655 567899999999999999999999999887776 5788999999999988763
Q ss_pred CcchhhHHHHHHHHH
Q 002012 477 LPDKAIDLVDEAAAK 491 (982)
Q Consensus 477 ~p~~a~~lld~a~~~ 491 (982)
.+..+.+.++....+
T Consensus 211 ~~~~a~~~lekl~~~ 225 (355)
T TIGR02397 211 SLRDALSLLDQLISF 225 (355)
T ss_pred ChHHHHHHHHHHHhh
Confidence 357777777777654
No 151
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=99.62 E-value=2.3e-14 Score=171.95 Aligned_cols=152 Identities=28% Similarity=0.344 Sum_probs=112.6
Q ss_pred EEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccccccccCCC-CCcccc---ccCCchhHHHhhCCCeEEEE
Q 002012 696 FMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRLVGAP-PGYVGY---EEGGQLTEVVRRRPYSVVLF 771 (982)
Q Consensus 696 lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l~g~~-~g~vg~---~~~~~l~~~l~~~~~~Vl~l 771 (982)
+||-|.||+|||++..+||+.. +..+++||.++.. ..-.|+|+. |+..|- ....++..+++..+ ++++
T Consensus 1546 ilLEGsPGVGKTSlItaLAr~t---G~kliRINLSeQT---dL~DLfGsd~Pve~~Gef~w~dapfL~amr~G~--WVlL 1617 (4600)
T COG5271 1546 ILLEGSPGVGKTSLITALARKT---GKKLIRINLSEQT---DLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDGG--WVLL 1617 (4600)
T ss_pred eeecCCCCccHHHHHHHHHHHh---cCceEEeeccccc---hHHHHhCCCCCcccCceeEecccHHHHHhhcCC--EEEe
Confidence 9999999999999999999997 8999999999874 355678873 222111 01123455555544 9999
Q ss_pred ccccccCHHHHHHHHHhhhcC-ceecCC-CcEEec-ccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHh
Q 002012 772 DEIEKAHQDVFNILLQLLDDG-RITDSQ-GRTVSF-TNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQ 848 (982)
Q Consensus 772 DEidkl~~~~~~~Ll~~le~g-~~~d~~-g~~~~~-~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 848 (982)
||+.-+...+++.|...||.. +...|+ ..+++. .|+++.++-|+..+ ++. ++
T Consensus 1618 DEiNLaSQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~q--------ggG-----------------RK 1672 (4600)
T COG5271 1618 DEINLASQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQ--------GGG-----------------RK 1672 (4600)
T ss_pred ehhhhhHHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhc--------CCC-----------------cc
Confidence 999999999999999999963 334443 334444 78889889886432 111 35
Q ss_pred hcChHHHhccccccccCCCChhHHHHHHHHHHH
Q 002012 849 TFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMN 881 (982)
Q Consensus 849 ~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~ 881 (982)
.++..|++|| .+|....|+.+++..|+.....
T Consensus 1673 gLPkSF~nRF-svV~~d~lt~dDi~~Ia~~~yp 1704 (4600)
T COG5271 1673 GLPKSFLNRF-SVVKMDGLTTDDITHIANKMYP 1704 (4600)
T ss_pred cCCHHHhhhh-heEEecccccchHHHHHHhhCC
Confidence 6888999999 5888899999999888876643
No 152
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.62 E-value=3.5e-15 Score=177.14 Aligned_cols=186 Identities=22% Similarity=0.323 Sum_probs=128.7
Q ss_pred hhcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCC----CceEEEe-ccccccc
Q 002012 661 LHKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTE----NALVRID-MSEYMEK 735 (982)
Q Consensus 661 l~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~----~~~v~i~-~s~~~~~ 735 (982)
.+.+|+||+.+++.|.+++...+. ...+||+||+|||||++|+.+|+.+++.. .++..+. |..+. .
T Consensus 14 ~f~divGQe~vv~~L~~~l~~~rl--------~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~-~ 84 (647)
T PRK07994 14 TFAEVVGQEHVLTALANALDLGRL--------HHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIE-Q 84 (647)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCC--------CeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHH-c
Confidence 357899999999999998874321 12279999999999999999999996531 1221110 11111 0
Q ss_pred cccccccC-CCCCccccccCCchhHHHhh----CCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEE
Q 002012 736 HSVSRLVG-APPGYVGYEEGGQLTEVVRR----RPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVI 810 (982)
Q Consensus 736 ~~~~~l~g-~~~g~vg~~~~~~l~~~l~~----~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI 810 (982)
..+..++- ......+.++.+.+.+.+.. ..+.|+||||+|+|+...+|.||+.||+- ..+++||
T Consensus 85 g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEP-----------p~~v~FI 153 (647)
T PRK07994 85 GRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEP-----------PEHVKFL 153 (647)
T ss_pred CCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcC-----------CCCeEEE
Confidence 01111110 11112333333444444443 34679999999999999999999999972 2468888
Q ss_pred EecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHHHHHHHHHhC
Q 002012 811 MTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQK 890 (982)
Q Consensus 811 ~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~~~~~~~~ 890 (982)
++|+.... +.+.+++|| ..+.|.|++.+++...+...+.. .
T Consensus 154 L~Tt~~~k-------------------------------Ll~TI~SRC-~~~~f~~Ls~~ei~~~L~~il~~-------e 194 (647)
T PRK07994 154 LATTDPQK-------------------------------LPVTILSRC-LQFHLKALDVEQIRQQLEHILQA-------E 194 (647)
T ss_pred EecCCccc-------------------------------cchHHHhhh-eEeeCCCCCHHHHHHHHHHHHHH-------c
Confidence 88875432 677899999 79999999999999988888765 3
Q ss_pred CCCccCCHHHHHHHHhc
Q 002012 891 KIDLHYTKEAVTLLGIL 907 (982)
Q Consensus 891 ~~~l~i~~~a~~~L~~~ 907 (982)
+ +.++++++..|+..
T Consensus 195 ~--i~~e~~aL~~Ia~~ 209 (647)
T PRK07994 195 Q--IPFEPRALQLLARA 209 (647)
T ss_pred C--CCCCHHHHHHHHHH
Confidence 4 67899999888875
No 153
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=3.9e-15 Score=173.80 Aligned_cols=199 Identities=19% Similarity=0.292 Sum_probs=133.7
Q ss_pred hcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCC----CceEEE-ecccccccc
Q 002012 662 HKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTE----NALVRI-DMSEYMEKH 736 (982)
Q Consensus 662 ~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~----~~~v~i-~~s~~~~~~ 736 (982)
+.+|+||+.+++.|.+++... +....+||+||+|||||++|+++|+.+.+.. .++-.+ +|..+.. .
T Consensus 14 FddVIGQe~vv~~L~~aI~~g--------rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~-g 84 (702)
T PRK14960 14 FNELVGQNHVSRALSSALERG--------RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNE-G 84 (702)
T ss_pred HHHhcCcHHHHHHHHHHHHcC--------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhc-C
Confidence 478999999999999988743 2223489999999999999999999985421 111111 1111110 1
Q ss_pred ccccccCC-CCCccccccCCchhHHHhh----CCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEE
Q 002012 737 SVSRLVGA-PPGYVGYEEGGQLTEVVRR----RPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIM 811 (982)
Q Consensus 737 ~~~~l~g~-~~g~vg~~~~~~l~~~l~~----~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~ 811 (982)
.+..++-- .....+.+..+.+.+.+.. ..+.|+||||+|.++...++.|++.||+.. .+++||+
T Consensus 85 ~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP-----------~~v~FIL 153 (702)
T PRK14960 85 RFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPP-----------EHVKFLF 153 (702)
T ss_pred CCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCC-----------CCcEEEE
Confidence 11111110 0111222222233333322 346799999999999999999999999721 3578888
Q ss_pred ecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHHHHHHHHHhCC
Q 002012 812 TSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKK 891 (982)
Q Consensus 812 tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~~~~~~~~~ 891 (982)
+|+.... +.+.+++|| ..+.|.|++.+++.+.+...+++ .+
T Consensus 154 aTtd~~k-------------------------------Ip~TIlSRC-q~feFkpLs~eEI~k~L~~Il~k-------Eg 194 (702)
T PRK14960 154 ATTDPQK-------------------------------LPITVISRC-LQFTLRPLAVDEITKHLGAILEK-------EQ 194 (702)
T ss_pred EECChHh-------------------------------hhHHHHHhh-heeeccCCCHHHHHHHHHHHHHH-------cC
Confidence 8865332 456888999 79999999999999988888765 34
Q ss_pred CCccCCHHHHHHHHhcCCCCCCCchHHHHHHHH
Q 002012 892 IDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQ 924 (982)
Q Consensus 892 ~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~ 924 (982)
+.++++++..|+..+ +.+.|...+.+.+
T Consensus 195 --I~id~eAL~~IA~~S---~GdLRdALnLLDQ 222 (702)
T PRK14960 195 --IAADQDAIWQIAESA---QGSLRDALSLTDQ 222 (702)
T ss_pred --CCCCHHHHHHHHHHc---CCCHHHHHHHHHH
Confidence 789999999999863 2345666666554
No 154
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=3.6e-15 Score=164.97 Aligned_cols=204 Identities=21% Similarity=0.322 Sum_probs=144.2
Q ss_pred HhhhcccccchHHHHHHHHHHHHHhcCCC----CCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEecccccc
Q 002012 659 EVLHKRVIGQDIAVKSVADAIRRSRAGLS----DPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYME 734 (982)
Q Consensus 659 ~~l~~~iiGq~~a~~~l~~~i~~~~~g~~----~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~ 734 (982)
..-++++-|-|+|+..+.+.+...+.-.. ..+-|.+ +||+||||||||.+|+++|... +.||.....++|.+
T Consensus 300 nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKG-VLLvGPPGTGKTlLARAvAGEA---~VPFF~~sGSEFdE 375 (752)
T KOG0734|consen 300 NVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKG-VLLVGPPGTGKTLLARAVAGEA---GVPFFYASGSEFDE 375 (752)
T ss_pred ccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCc-eEEeCCCCCchhHHHHHhhccc---CCCeEeccccchhh
Confidence 34468899999999888887754322100 1134555 9999999999999999999886 88999999999865
Q ss_pred ccccccccCCCCCccccccCCchhHHHhhCCCeEEEEccccccCH-----------HHHHHHHHhhhcCceecCCCcEEe
Q 002012 735 KHSVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEIEKAHQ-----------DVFNILLQLLDDGRITDSQGRTVS 803 (982)
Q Consensus 735 ~~~~~~l~g~~~g~vg~~~~~~l~~~l~~~~~~Vl~lDEidkl~~-----------~~~~~Ll~~le~g~~~d~~g~~~~ 803 (982)
. ++| +|..-.+.|+.+.+.+.+|||||||||.... ..+|.||--||. |.-.
T Consensus 376 m-----~VG-----vGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDG--F~qN------ 437 (752)
T KOG0734|consen 376 M-----FVG-----VGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDG--FKQN------ 437 (752)
T ss_pred h-----hhc-----ccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcC--cCcC------
Confidence 3 222 2333446788999999999999999998742 256666666663 1111
Q ss_pred cccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHH--hccccccccCCCChhHHHHHHHHHHH
Q 002012 804 FTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFL--NRIDEYIVFQPLDSKEISKIVEIQMN 881 (982)
Q Consensus 804 ~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll--~Rid~ii~F~pl~~~~l~~il~~~l~ 881 (982)
.-+|||.+||.+.. ++++|. +|||..|..+.+|-.-..+|+..++.
T Consensus 438 -eGiIvigATNfpe~-------------------------------LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ 485 (752)
T KOG0734|consen 438 -EGIIVIGATNFPEA-------------------------------LDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLS 485 (752)
T ss_pred -CceEEEeccCChhh-------------------------------hhHHhcCCCccceeEecCCCCcccHHHHHHHHHh
Confidence 24889999997643 333443 89999999999999999999999998
Q ss_pred HHHHHHHhCCCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHHHHHH
Q 002012 882 RVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVEN 928 (982)
Q Consensus 882 ~~~~~~~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~l~~ 928 (982)
+ +..++++--.+...| .+.|.+.+|.+.|......
T Consensus 486 k-----------i~~~~~VD~~iiARG-T~GFsGAdLaNlVNqAAlk 520 (752)
T KOG0734|consen 486 K-----------IPLDEDVDPKIIARG-TPGFSGADLANLVNQAALK 520 (752)
T ss_pred c-----------CCcccCCCHhHhccC-CCCCchHHHHHHHHHHHHH
Confidence 6 223333222223343 4567778899999875443
No 155
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.61 E-value=1.6e-14 Score=169.92 Aligned_cols=226 Identities=17% Similarity=0.244 Sum_probs=166.7
Q ss_pred cccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccccccccCC
Q 002012 665 VIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRLVGA 744 (982)
Q Consensus 665 iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l~g~ 744 (982)
++|....+..+...+.... ....+++++|++||||+.+|++++......+.+|+.+||+.+........++|.
T Consensus 141 lig~s~~~~~~~~~i~~~~-------~~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~lfg~ 213 (441)
T PRK10365 141 MVGKSPAMQHLLSEIALVA-------PSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGH 213 (441)
T ss_pred eEecCHHHHHHHHHHhhcc-------CCCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHHhcCC
Confidence 5566666665655554321 112248899999999999999999988767789999999987654444567787
Q ss_pred CCCcc-ccccCCchhHHHhhCCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCChHHHHHh
Q 002012 745 PPGYV-GYEEGGQLTEVVRRRPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILET 823 (982)
Q Consensus 745 ~~g~v-g~~~~~~l~~~l~~~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~i~~~ 823 (982)
..|.. |... ...+.+..+.+++||||||+.+++..|..|+.+++++.+....+......++++|+||+........
T Consensus 214 ~~~~~~~~~~--~~~g~~~~a~~gtl~ldei~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~~~~~~- 290 (441)
T PRK10365 214 EKGAFTGADK--RREGRFVEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVN- 290 (441)
T ss_pred CCCCcCCCCc--CCCCceeECCCCEEEEeccccCCHHHHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCHHHHHH-
Confidence 55432 2111 1233456777899999999999999999999999999876544433344578899999876543222
Q ss_pred hhhcccchHHHHHHHHHHHHHHHHhhcChHHHhcccc-ccccCCCCh--hHHHHHHHHHHHHHHHHHHhCCCCccCCHHH
Q 002012 824 LQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDE-YIVFQPLDS--KEISKIVEIQMNRVKDRLKQKKIDLHYTKEA 900 (982)
Q Consensus 824 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~-ii~F~pl~~--~~l~~il~~~l~~~~~~~~~~~~~l~i~~~a 900 (982)
.+.|+++|+.|+.. .|..|||.+ +|+..+++.++.++..+.... ...+++++
T Consensus 291 -----------------------~~~~~~~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~--~~~~~~~a 345 (441)
T PRK10365 291 -----------------------AGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKA--VKGFTPQA 345 (441)
T ss_pred -----------------------cCCchHHHHHHhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCC--CCCcCHHH
Confidence 24588999999965 577888875 699999999998876544322 25699999
Q ss_pred HHHHHhcCCCCCCCchHHHHHHHHHHH
Q 002012 901 VTLLGILGFDPNFGARPVKRVIQQLVE 927 (982)
Q Consensus 901 ~~~L~~~~~~~~~gaR~L~~~i~~~l~ 927 (982)
++.|..+.|++|. |+|++++++.+.
T Consensus 346 ~~~L~~~~wpgN~--reL~~~~~~~~~ 370 (441)
T PRK10365 346 MDLLIHYDWPGNI--RELENAVERAVV 370 (441)
T ss_pred HHHHHhCCCCCHH--HHHHHHHHHHHH
Confidence 9999999999866 899999998554
No 156
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.61 E-value=1.4e-14 Score=162.84 Aligned_cols=198 Identities=23% Similarity=0.329 Sum_probs=146.3
Q ss_pred hhhHHHhhcCCCCCcccchHHHHHHHHHhccCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccc
Q 002012 257 NDLTELARSGKLDPVIGRDDEIRRCIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASL 336 (982)
Q Consensus 257 ~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l 336 (982)
..|.+++||..|++++|+++.++.+...+.....++++|+||||+|||++++.+++.+..... ...++.++.+..
T Consensus 5 ~~w~~kyrP~~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~-----~~~~i~~~~~~~ 79 (319)
T PRK00440 5 EIWVEKYRPRTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGEDW-----RENFLELNASDE 79 (319)
T ss_pred CccchhhCCCcHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCcc-----ccceEEeccccc
Confidence 469999999999999999999999999888777778999999999999999999999854321 234455543321
Q ss_pred cccccccccHHHHHHHHHHHHHhc-----CCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhc--CCCeEEEEecCchh
Q 002012 337 VAGTCYRGDFEKRLKAVLKEVTKS-----NGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLG--RGELRCIGATTLNE 409 (982)
Q Consensus 337 ~~~~~~~g~~e~~l~~l~~~~~~~-----~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le--~g~i~vI~at~~~~ 409 (982)
. + . ..+...+...... ....+++|||+|.+. .+..+.|..+++ .....+|.+++...
T Consensus 80 ~------~-~-~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~--------~~~~~~L~~~le~~~~~~~lIl~~~~~~ 143 (319)
T PRK00440 80 R------G-I-DVIRNKIKEFARTAPVGGAPFKIIFLDEADNLT--------SDAQQALRRTMEMYSQNTRFILSCNYSS 143 (319)
T ss_pred c------c-h-HHHHHHHHHHHhcCCCCCCCceEEEEeCcccCC--------HHHHHHHHHHHhcCCCCCeEEEEeCCcc
Confidence 1 1 1 1122222222211 234599999999885 334566777776 34567777776554
Q ss_pred HhhhhhcChHHHhccceEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCCcchhhHHHHHHH
Q 002012 410 YRNYIEKDPALERRFQQVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLPDKAIDLVDEAA 489 (982)
Q Consensus 410 ~~~~~~~d~al~rRf~~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~p~~a~~lld~a~ 489 (982)
.+.+++.+|+..+.+.+|+.+++..+++..+.+ .++.++++++..++..+.+. ++.+++.++.++
T Consensus 144 -----~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~~----~~~~i~~~al~~l~~~~~gd------~r~~~~~l~~~~ 208 (319)
T PRK00440 144 -----KIIDPIQSRCAVFRFSPLKKEAVAERLRYIAEN----EGIEITDDALEAIYYVSEGD------MRKAINALQAAA 208 (319)
T ss_pred -----ccchhHHHHhheeeeCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC------HHHHHHHHHHHH
Confidence 567789999999999999999999999887776 58899999999999987644 477788887666
Q ss_pred H
Q 002012 490 A 490 (982)
Q Consensus 490 ~ 490 (982)
.
T Consensus 209 ~ 209 (319)
T PRK00440 209 A 209 (319)
T ss_pred H
Confidence 4
No 157
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=2.1e-14 Score=172.10 Aligned_cols=201 Identities=20% Similarity=0.199 Sum_probs=151.9
Q ss_pred hhhHHHhhcCCCCCcccchHHHHHHHHHhccCC-CCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCC-----CC-------
Q 002012 257 NDLTELARSGKLDPVIGRDDEIRRCIQILSRRT-KNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPE-----TL------- 323 (982)
Q Consensus 257 ~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~-~~~iLL~GppGvGKT~la~~la~~l~~~~~p~-----~l------- 323 (982)
.+|.+++||..|++++|+++.+..+...+..+. .+++||+||+|+|||++|+.+|+.+.+..... ..
T Consensus 4 ~pl~~kyRP~~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~ 83 (620)
T PRK14948 4 EPLHHKYRPQRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRA 83 (620)
T ss_pred chHHHHhCCCcHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHH
Confidence 468999999999999999999999998887654 35788999999999999999999997632110 00
Q ss_pred ----CCCeEEEEecccccccccccccHHHHHHHHHHHHHhc---CCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcC
Q 002012 324 ----QNRKLISLDMASLVAGTCYRGDFEKRLKAVLKEVTKS---NGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGR 396 (982)
Q Consensus 324 ----~~~~v~~l~~~~l~~~~~~~g~~e~~l~~l~~~~~~~---~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~ 396 (982)
....++.++.. .+...+.++++++.+... +...|+||||+|.|. .+++|.|+..++.
T Consensus 84 i~~g~h~D~~ei~~~--------~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt--------~~a~naLLK~LEe 147 (620)
T PRK14948 84 IAAGNALDVIEIDAA--------SNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLS--------TAAFNALLKTLEE 147 (620)
T ss_pred HhcCCCccEEEEecc--------ccCCHHHHHHHHHHHhhChhcCCceEEEEECccccC--------HHHHHHHHHHHhc
Confidence 01123333321 122345567777665532 345699999999986 5677888888885
Q ss_pred --CCeEEEEecCchhHhhhhhcChHHHhccceEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhcc
Q 002012 397 --GELRCIGATTLNEYRNYIEKDPALERRFQQVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITE 474 (982)
Q Consensus 397 --g~i~vI~at~~~~~~~~~~~d~al~rRf~~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~ 474 (982)
+.+++|++|+... .+.+++++||..+.|..++.+++...|..+..+ .++.++++++..++.++++.
T Consensus 148 Pp~~tvfIL~t~~~~-----~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~k----egi~is~~al~~La~~s~G~--- 215 (620)
T PRK14948 148 PPPRVVFVLATTDPQ-----RVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEK----ESIEIEPEALTLVAQRSQGG--- 215 (620)
T ss_pred CCcCeEEEEEeCChh-----hhhHHHHhheeEEEecCCCHHHHHHHHHHHHHH----hCCCCCHHHHHHHHHHcCCC---
Confidence 6788898887655 577899999999999999999988888877776 57889999999999997643
Q ss_pred CCCcchhhHHHHHH
Q 002012 475 RFLPDKAIDLVDEA 488 (982)
Q Consensus 475 ~~~p~~a~~lld~a 488 (982)
++.+..+++..
T Consensus 216 ---lr~A~~lLekl 226 (620)
T PRK14948 216 ---LRDAESLLDQL 226 (620)
T ss_pred ---HHHHHHHHHHH
Confidence 36777777754
No 158
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=2.6e-14 Score=171.41 Aligned_cols=204 Identities=21% Similarity=0.223 Sum_probs=156.7
Q ss_pred hhHHHhhcCCCCCcccchHHHHHHHHHhccCCCCC-cEEeCCCCCcHHHHHHHHHHHhhcCCCCC---------------
Q 002012 258 DLTELARSGKLDPVIGRDDEIRRCIQILSRRTKNN-PVIIGEPGVGKTAIAEGLAQRIVRGDVPE--------------- 321 (982)
Q Consensus 258 ~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~-iLL~GppGvGKT~la~~la~~l~~~~~p~--------------- 321 (982)
.+.+++||.+|+++||+++.++.+...+..+...| +||+||+|+|||++|+.+|+.+.+.....
T Consensus 6 ~~~~kyRP~~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~ 85 (614)
T PRK14971 6 VSARKYRPSTFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFN 85 (614)
T ss_pred HHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHh
Confidence 47889999999999999999999999988877777 68999999999999999999986432110
Q ss_pred CCCCCeEEEEecccccccccccccHHHHHHHHHHHHHhc---CCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcC--
Q 002012 322 TLQNRKLISLDMASLVAGTCYRGDFEKRLKAVLKEVTKS---NGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGR-- 396 (982)
Q Consensus 322 ~l~~~~v~~l~~~~l~~~~~~~g~~e~~l~~l~~~~~~~---~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~-- 396 (982)
......++.+|.++- .....++.+++.+... ++.-|++|||+|.|. .+.++.|+.+|+.
T Consensus 86 ~~~~~n~~~ld~~~~--------~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls--------~~a~naLLK~LEepp 149 (614)
T PRK14971 86 EQRSYNIHELDAASN--------NSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLS--------QAAFNAFLKTLEEPP 149 (614)
T ss_pred cCCCCceEEeccccc--------CCHHHHHHHHHHHhhCcccCCcEEEEEECcccCC--------HHHHHHHHHHHhCCC
Confidence 111234444443211 1123455666555421 345599999999996 5677889999985
Q ss_pred CCeEEEEecCchhHhhhhhcChHHHhccceEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCC
Q 002012 397 GELRCIGATTLNEYRNYIEKDPALERRFQQVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERF 476 (982)
Q Consensus 397 g~i~vI~at~~~~~~~~~~~d~al~rRf~~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~ 476 (982)
....+|++|+... .+-+++++||..+.|..++.+++...|+.++.+ .++.++++++..++..+++.+
T Consensus 150 ~~tifIL~tt~~~-----kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~----egi~i~~~al~~La~~s~gdl---- 216 (614)
T PRK14971 150 SYAIFILATTEKH-----KILPTILSRCQIFDFNRIQVADIVNHLQYVASK----EGITAEPEALNVIAQKADGGM---- 216 (614)
T ss_pred CCeEEEEEeCCch-----hchHHHHhhhheeecCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH----
Confidence 5688888887654 678999999999999999999999999888777 689999999999999987543
Q ss_pred CcchhhHHHHHHHHHh
Q 002012 477 LPDKAIDLVDEAAAKL 492 (982)
Q Consensus 477 ~p~~a~~lld~a~~~~ 492 (982)
+++..+++..+++.
T Consensus 217 --r~al~~Lekl~~y~ 230 (614)
T PRK14971 217 --RDALSIFDQVVSFT 230 (614)
T ss_pred --HHHHHHHHHHHHhc
Confidence 77888888776553
No 159
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=6.4e-15 Score=171.09 Aligned_cols=202 Identities=23% Similarity=0.323 Sum_probs=151.8
Q ss_pred CCCCCcccchHHHHHHHH---Hhcc---------CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEec
Q 002012 266 GKLDPVIGRDDEIRRCIQ---ILSR---------RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDM 333 (982)
Q Consensus 266 ~~l~~liG~~~~i~~l~~---~L~~---------~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~ 333 (982)
-+|.++-|.++..+.+.+ .|.. +-+.+++|+||||||||.||+++|.+. +.+++++.-
T Consensus 147 v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA----------~VPFf~iSG 216 (596)
T COG0465 147 VTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEA----------GVPFFSISG 216 (596)
T ss_pred cChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhccc----------CCCceeccc
Confidence 478889998885555554 4432 346789999999999999999999887 889999988
Q ss_pred ccccccccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCC---CCch---hhHHHHHHhhhc----CCCeEEEE
Q 002012 334 ASLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGN---QSGA---MDASNMLKPMLG----RGELRCIG 403 (982)
Q Consensus 334 ~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~---~~~~---~~~~~~L~~~le----~g~i~vI~ 403 (982)
++++ ..|.|-...+.+++|.+++. +.|||+||||||.+...+. .+|. .+..|.|+..|+ +..|.+|+
T Consensus 217 S~FV--emfVGvGAsRVRdLF~qAkk-~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gvivia 293 (596)
T COG0465 217 SDFV--EMFVGVGASRVRDLFEQAKK-NAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIA 293 (596)
T ss_pred hhhh--hhhcCCCcHHHHHHHHHhhc-cCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEe
Confidence 8888 45788888899999999987 6789999999999876653 1222 234566666665 34799999
Q ss_pred ecCchhHhhhhhcChHHHh--ccc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCCcch
Q 002012 404 ATTLNEYRNYIEKDPALER--RFQ-QVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLPDK 480 (982)
Q Consensus 404 at~~~~~~~~~~~d~al~r--Rf~-~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~p~~ 480 (982)
+||+++ .+||||.| ||+ .|.++.|+...+.+||+.....- .....++- ..++.. +..+..++
T Consensus 294 aTNRpd-----VlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~--~l~~~Vdl---~~iAr~-----tpGfsGAd 358 (596)
T COG0465 294 ATNRPD-----VLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNK--PLAEDVDL---KKIARG-----TPGFSGAD 358 (596)
T ss_pred cCCCcc-----cchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcC--CCCCcCCH---HHHhhh-----CCCcccch
Confidence 999999 79999999 997 99999999999999998544431 11222222 224444 44566688
Q ss_pred hhHHHHHHHHHhhhh
Q 002012 481 AIDLVDEAAAKLKME 495 (982)
Q Consensus 481 a~~lld~a~~~~~~~ 495 (982)
..+++.+|+-.....
T Consensus 359 L~nl~NEAal~aar~ 373 (596)
T COG0465 359 LANLLNEAALLAARR 373 (596)
T ss_pred HhhhHHHHHHHHHHh
Confidence 889998888665543
No 160
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=3.7e-14 Score=162.41 Aligned_cols=204 Identities=23% Similarity=0.250 Sum_probs=149.7
Q ss_pred hhhHHHhhcCCCCCcccchHHHHHHHHHhccCCC-CCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCC--CCCeEEEEec
Q 002012 257 NDLTELARSGKLDPVIGRDDEIRRCIQILSRRTK-NNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETL--QNRKLISLDM 333 (982)
Q Consensus 257 ~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~-~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l--~~~~v~~l~~ 333 (982)
..|.+++||.+|++++|++..++.+.+.+..+.. +++||+||||+|||++|+.+++.+.+...+... .+..++.++.
T Consensus 5 ~~~~~k~rP~~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~ 84 (367)
T PRK14970 5 VVSARKYRPQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDA 84 (367)
T ss_pred HHHHHHHCCCcHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEecc
Confidence 4589999999999999999999999998877544 468899999999999999999998653322111 1233444432
Q ss_pred ccccccccccccHHHHHHHHHHHHHhc---CCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcC--CCeEEEEecCch
Q 002012 334 ASLVAGTCYRGDFEKRLKAVLKEVTKS---NGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGR--GELRCIGATTLN 408 (982)
Q Consensus 334 ~~l~~~~~~~g~~e~~l~~l~~~~~~~---~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~--g~i~vI~at~~~ 408 (982)
.. ......+..+++++... ++..|+||||+|.+. ....+.|+..++. ....+|++++..
T Consensus 85 ~~--------~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~--------~~~~~~ll~~le~~~~~~~~Il~~~~~ 148 (367)
T PRK14970 85 AS--------NNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLS--------SAAFNAFLKTLEEPPAHAIFILATTEK 148 (367)
T ss_pred cc--------CCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcC--------HHHHHHHHHHHhCCCCceEEEEEeCCc
Confidence 11 11123455666654321 334699999999885 3345667777764 356777777665
Q ss_pred hHhhhhhcChHHHhccceEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCCcchhhHHHHHH
Q 002012 409 EYRNYIEKDPALERRFQQVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLPDKAIDLVDEA 488 (982)
Q Consensus 409 ~~~~~~~~d~al~rRf~~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~p~~a~~lld~a 488 (982)
. .+.+++.+||..+.+..|+.+++..++...+.+ +++.++++++..++..+.+- .+.+...++..
T Consensus 149 ~-----kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~----~g~~i~~~al~~l~~~~~gd------lr~~~~~lekl 213 (367)
T PRK14970 149 H-----KIIPTILSRCQIFDFKRITIKDIKEHLAGIAVK----EGIKFEDDALHIIAQKADGA------LRDALSIFDRV 213 (367)
T ss_pred c-----cCCHHHHhcceeEecCCccHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHhCCCC------HHHHHHHHHHH
Confidence 4 678999999999999999999999999887776 68899999999999987632 36777777766
Q ss_pred HHH
Q 002012 489 AAK 491 (982)
Q Consensus 489 ~~~ 491 (982)
+.+
T Consensus 214 ~~y 216 (367)
T PRK14970 214 VTF 216 (367)
T ss_pred HHh
Confidence 654
No 161
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=1.5e-14 Score=171.03 Aligned_cols=201 Identities=18% Similarity=0.251 Sum_probs=136.1
Q ss_pred hhcccccchHHHHHHHHHHHHHhcCCCCCCCCCce-EEeecCCCCchHHHHHHHHHHhcCCC----CceEEE-ecccccc
Q 002012 661 LHKRVIGQDIAVKSVADAIRRSRAGLSDPARPIAS-FMFMGPTGVGKTELGKALADFLFNTE----NALVRI-DMSEYME 734 (982)
Q Consensus 661 l~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~-lLf~Gp~GtGKT~lA~~la~~l~~~~----~~~v~i-~~s~~~~ 734 (982)
.+.+|+||+++++.|.+++... .+.| +||+||+|||||++|+++|+.+++.. .++-.+ .|..+..
T Consensus 11 ~f~eivGq~~i~~~L~~~i~~~---------r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~ 81 (584)
T PRK14952 11 TFAEVVGQEHVTEPLSSALDAG---------RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAP 81 (584)
T ss_pred cHHHhcCcHHHHHHHHHHHHcC---------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhc
Confidence 3578999999999999988732 2223 79999999999999999999997532 122111 1111110
Q ss_pred c-ccccccc-CCCCCccccccCCchhHHHhh----CCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEE
Q 002012 735 K-HSVSRLV-GAPPGYVGYEEGGQLTEVVRR----RPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCV 808 (982)
Q Consensus 735 ~-~~~~~l~-g~~~g~vg~~~~~~l~~~l~~----~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~i 808 (982)
. +....++ -......|.++.+.+.+.+.. +.+.|+||||+|.++.+.+|+|++.||+- ..+++
T Consensus 82 ~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEp-----------p~~~~ 150 (584)
T PRK14952 82 NGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEP-----------PEHLI 150 (584)
T ss_pred ccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcC-----------CCCeE
Confidence 0 0001111 011112233333334444433 45679999999999999999999999971 24688
Q ss_pred EEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHHHHHHHHH
Q 002012 809 VIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLK 888 (982)
Q Consensus 809 iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~~~~~~ 888 (982)
||++|+.... +.+++.+|| ..+.|.+++.+++.+.+...+++
T Consensus 151 fIL~tte~~k-------------------------------ll~TI~SRc-~~~~F~~l~~~~i~~~L~~i~~~------ 192 (584)
T PRK14952 151 FIFATTEPEK-------------------------------VLPTIRSRT-HHYPFRLLPPRTMRALIARICEQ------ 192 (584)
T ss_pred EEEEeCChHh-------------------------------hHHHHHHhc-eEEEeeCCCHHHHHHHHHHHHHH------
Confidence 8888864321 567899998 79999999999998888777765
Q ss_pred hCCCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHHH
Q 002012 889 QKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQL 925 (982)
Q Consensus 889 ~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~ 925 (982)
.+ +.++++++.+|+..+. .+.|...+.++++
T Consensus 193 -eg--i~i~~~al~~Ia~~s~---GdlR~aln~Ldql 223 (584)
T PRK14952 193 -EG--VVVDDAVYPLVIRAGG---GSPRDTLSVLDQL 223 (584)
T ss_pred -cC--CCCCHHHHHHHHHHcC---CCHHHHHHHHHHH
Confidence 44 6789999999987532 2356666666664
No 162
>PLN03025 replication factor C subunit; Provisional
Probab=99.60 E-value=2.2e-14 Score=160.81 Aligned_cols=181 Identities=19% Similarity=0.249 Sum_probs=127.1
Q ss_pred cccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCC--CceEEEecccccccccccc
Q 002012 663 KRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTE--NALVRIDMSEYMEKHSVSR 740 (982)
Q Consensus 663 ~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~--~~~v~i~~s~~~~~~~~~~ 740 (982)
.+++||++++..|...+.. ....|++|+||||||||++|+++|+.+++.+ ..++.+|.++......+
T Consensus 13 ~~~~g~~~~~~~L~~~~~~---------~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~~~~v-- 81 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARD---------GNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRGIDVV-- 81 (319)
T ss_pred HHhcCcHHHHHHHHHHHhc---------CCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccccHHHH--
Confidence 6789999999888766552 2223699999999999999999999997643 23444554432111000
Q ss_pred ccCCCCCccccccCCchhHHH-------hhCCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEEec
Q 002012 741 LVGAPPGYVGYEEGGQLTEVV-------RRRPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTS 813 (982)
Q Consensus 741 l~g~~~g~vg~~~~~~l~~~l-------~~~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~ts 813 (982)
+.+...+ ....+.|++|||+|.+....+++|++.||... .+++||+++
T Consensus 82 --------------r~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~-----------~~t~~il~~ 136 (319)
T PLN03025 82 --------------RNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYS-----------NTTRFALAC 136 (319)
T ss_pred --------------HHHHHHHHhccccCCCCCeEEEEEechhhcCHHHHHHHHHHHhccc-----------CCceEEEEe
Confidence 0011110 01246799999999999999999999998521 246788888
Q ss_pred CCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHHHHHHHHHhCCCC
Q 002012 814 NIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKID 893 (982)
Q Consensus 814 n~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~~~~~~~~~~~ 893 (982)
|.... +.+++.+|| .++.|.|++.+++.+.+...+++ .+
T Consensus 137 n~~~~-------------------------------i~~~L~SRc-~~i~f~~l~~~~l~~~L~~i~~~-------eg-- 175 (319)
T PLN03025 137 NTSSK-------------------------------IIEPIQSRC-AIVRFSRLSDQEILGRLMKVVEA-------EK-- 175 (319)
T ss_pred CCccc-------------------------------cchhHHHhh-hcccCCCCCHHHHHHHHHHHHHH-------cC--
Confidence 85432 567899999 68999999999998888877654 45
Q ss_pred ccCCHHHHHHHHhcCCCCCCCchHHHHHHH
Q 002012 894 LHYTKEAVTLLGILGFDPNFGARPVKRVIQ 923 (982)
Q Consensus 894 l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~ 923 (982)
+.++++++++|+..+ .+ ..|.+-+.++
T Consensus 176 i~i~~~~l~~i~~~~-~g--DlR~aln~Lq 202 (319)
T PLN03025 176 VPYVPEGLEAIIFTA-DG--DMRQALNNLQ 202 (319)
T ss_pred CCCCHHHHHHHHHHc-CC--CHHHHHHHHH
Confidence 678999999999863 22 2355544444
No 163
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=7.2e-15 Score=172.21 Aligned_cols=202 Identities=20% Similarity=0.320 Sum_probs=135.6
Q ss_pred hhcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCC----CceEEEecccccccc
Q 002012 661 LHKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTE----NALVRIDMSEYMEKH 736 (982)
Q Consensus 661 l~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~----~~~v~i~~s~~~~~~ 736 (982)
-+.+++||+.+++.+..++... +....+||+||+|||||++|+.+|+.+++.. .++..+.........
T Consensus 14 ~f~diiGq~~~v~~L~~~i~~~--------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~ 85 (546)
T PRK14957 14 SFAEVAGQQHALNSLVHALETQ--------KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNN 85 (546)
T ss_pred cHHHhcCcHHHHHHHHHHHHcC--------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcC
Confidence 3478999999999999888742 1222389999999999999999999986421 122111100001111
Q ss_pred ccccccC-CCCCccccccCCchhHHHhh----CCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEE
Q 002012 737 SVSRLVG-APPGYVGYEEGGQLTEVVRR----RPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIM 811 (982)
Q Consensus 737 ~~~~l~g-~~~g~vg~~~~~~l~~~l~~----~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~ 811 (982)
.+..++. ......|.++.+.+.+.+.. ..+.|+||||+|+++...++.|++.||+.. .+++||+
T Consensus 86 ~~~dlieidaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp-----------~~v~fIL 154 (546)
T PRK14957 86 SFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPP-----------EYVKFIL 154 (546)
T ss_pred CCCceEEeecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCC-----------CCceEEE
Confidence 1111111 11122333333444444443 346799999999999999999999999732 3577887
Q ss_pred ecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHHHHHHHHHhCC
Q 002012 812 TSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKK 891 (982)
Q Consensus 812 tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~~~~~~~~~ 891 (982)
+|+... .+.+.+.+|| .++.|.|++.+++.+.+...+++ .+
T Consensus 155 ~Ttd~~-------------------------------kil~tI~SRc-~~~~f~~Ls~~eI~~~L~~il~~-------eg 195 (546)
T PRK14957 155 ATTDYH-------------------------------KIPVTILSRC-IQLHLKHISQADIKDQLKIILAK-------EN 195 (546)
T ss_pred EECChh-------------------------------hhhhhHHHhe-eeEEeCCCCHHHHHHHHHHHHHH-------cC
Confidence 775421 1456799999 79999999999999888877765 34
Q ss_pred CCccCCHHHHHHHHhcCCCCCCCchHHHHHHHHH
Q 002012 892 IDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQL 925 (982)
Q Consensus 892 ~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~ 925 (982)
+.+++++++.|+..+ . ...|.+-+.++++
T Consensus 196 --i~~e~~Al~~Ia~~s-~--GdlR~alnlLek~ 224 (546)
T PRK14957 196 --INSDEQSLEYIAYHA-K--GSLRDALSLLDQA 224 (546)
T ss_pred --CCCCHHHHHHHHHHc-C--CCHHHHHHHHHHH
Confidence 789999999999864 2 2356666666653
No 164
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=9.1e-15 Score=173.45 Aligned_cols=199 Identities=18% Similarity=0.259 Sum_probs=134.1
Q ss_pred hcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCC---------ceEEE-eccc
Q 002012 662 HKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTEN---------ALVRI-DMSE 731 (982)
Q Consensus 662 ~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~---------~~v~i-~~s~ 731 (982)
+++++||+++++.|.+++...+. ...+||+||+|||||++|+++|+.+++.+. ++-.+ +|..
T Consensus 15 f~dviGQe~vv~~L~~~l~~~rl--------~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~ 86 (618)
T PRK14951 15 FSEMVGQEHVVQALTNALTQQRL--------HHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRD 86 (618)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCC--------CeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHH
Confidence 47789999999999998874421 123799999999999999999999965321 11111 1111
Q ss_pred cccccccccccCC-CCCccccccCCchhHHHhhC----CCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEeccc
Q 002012 732 YMEKHSVSRLVGA-PPGYVGYEEGGQLTEVVRRR----PYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTN 806 (982)
Q Consensus 732 ~~~~~~~~~l~g~-~~g~vg~~~~~~l~~~l~~~----~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~ 806 (982)
+ +...+..++-- .....|.++.+.+.+.+... .+.|+||||+|.|+...+|.|++.||+- ..+
T Consensus 87 i-~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEP-----------P~~ 154 (618)
T PRK14951 87 I-DSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEP-----------PEY 154 (618)
T ss_pred H-HcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccC-----------CCC
Confidence 1 11111111111 11122333333344444433 3679999999999999999999999972 146
Q ss_pred EEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHHHHHHH
Q 002012 807 CVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDR 886 (982)
Q Consensus 807 ~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~~~~ 886 (982)
++||++|+.... +.+.+++|| ..+.|.+++.+++.+.+...+.+
T Consensus 155 ~~fIL~Ttd~~k-------------------------------il~TIlSRc-~~~~f~~Ls~eei~~~L~~i~~~---- 198 (618)
T PRK14951 155 LKFVLATTDPQK-------------------------------VPVTVLSRC-LQFNLRPMAPETVLEHLTQVLAA---- 198 (618)
T ss_pred eEEEEEECCchh-------------------------------hhHHHHHhc-eeeecCCCCHHHHHHHHHHHHHH----
Confidence 788888864332 456799999 79999999999999988877764
Q ss_pred HHhCCCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHH
Q 002012 887 LKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQ 924 (982)
Q Consensus 887 ~~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~ 924 (982)
.| +.++++++++|+..+ . .+.|.+.+.+++
T Consensus 199 ---eg--i~ie~~AL~~La~~s-~--GslR~al~lLdq 228 (618)
T PRK14951 199 ---EN--VPAEPQALRLLARAA-R--GSMRDALSLTDQ 228 (618)
T ss_pred ---cC--CCCCHHHHHHHHHHc-C--CCHHHHHHHHHH
Confidence 44 678999999998863 2 234555555543
No 165
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.59 E-value=1e-14 Score=178.71 Aligned_cols=203 Identities=18% Similarity=0.229 Sum_probs=134.9
Q ss_pred hhcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCC----ceEEE-eccccccc
Q 002012 661 LHKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTEN----ALVRI-DMSEYMEK 735 (982)
Q Consensus 661 l~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~----~~v~i-~~s~~~~~ 735 (982)
-+.+|+||+.+++.|.+++...+. ...+||+||+|||||++|++||+.|++.+. +|-.+ .|..+...
T Consensus 13 ~f~eiiGqe~v~~~L~~~i~~~ri--------~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g 84 (824)
T PRK07764 13 TFAEVIGQEHVTEPLSTALDSGRI--------NHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPG 84 (824)
T ss_pred CHHHhcCcHHHHHHHHHHHHhCCC--------CceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcC
Confidence 357899999999999999874321 123899999999999999999999975321 22111 11111100
Q ss_pred -cccccccC-CCCCccccccCCchhHHHh----hCCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEE
Q 002012 736 -HSVSRLVG-APPGYVGYEEGGQLTEVVR----RRPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVV 809 (982)
Q Consensus 736 -~~~~~l~g-~~~g~vg~~~~~~l~~~l~----~~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~ii 809 (982)
+....++- ......|.++.+.+.+.+. ...+.|+||||+|+|+...+|.||++||+- -.+++|
T Consensus 85 ~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEp-----------P~~~~f 153 (824)
T PRK07764 85 GPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEP-----------PEHLKF 153 (824)
T ss_pred CCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCC-----------CCCeEE
Confidence 00000100 0001122222233333322 245689999999999999999999999972 146889
Q ss_pred EEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHHHHHHHHHh
Q 002012 810 IMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQ 889 (982)
Q Consensus 810 I~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~~~~~~~ 889 (982)
||+|+.... +.+.+.+|| .++.|.+++.+++.+++...+++
T Consensus 154 Il~tt~~~k-------------------------------Ll~TIrSRc-~~v~F~~l~~~~l~~~L~~il~~------- 194 (824)
T PRK07764 154 IFATTEPDK-------------------------------VIGTIRSRT-HHYPFRLVPPEVMRGYLERICAQ------- 194 (824)
T ss_pred EEEeCChhh-------------------------------hhHHHHhhe-eEEEeeCCCHHHHHHHHHHHHHH-------
Confidence 988864321 456788999 79999999999999998877765
Q ss_pred CCCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHHHH
Q 002012 890 KKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLV 926 (982)
Q Consensus 890 ~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~l 926 (982)
.+ +.++++++.+|+..+. ...|...+.+++++
T Consensus 195 EG--v~id~eal~lLa~~sg---GdlR~Al~eLEKLi 226 (824)
T PRK07764 195 EG--VPVEPGVLPLVIRAGG---GSVRDSLSVLDQLL 226 (824)
T ss_pred cC--CCCCHHHHHHHHHHcC---CCHHHHHHHHHHHH
Confidence 44 6789999999888632 23466666666644
No 166
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=9.2e-15 Score=168.97 Aligned_cols=201 Identities=15% Similarity=0.216 Sum_probs=136.9
Q ss_pred hhcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCC----ceEEE-eccccccc
Q 002012 661 LHKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTEN----ALVRI-DMSEYMEK 735 (982)
Q Consensus 661 l~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~----~~v~i-~~s~~~~~ 735 (982)
-+.+++||+.+++.+.+++... +...++||+||+|+|||++|+.+|+.+.+... ++-.+ +|..+..
T Consensus 11 ~f~dliGQe~vv~~L~~a~~~~--------ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~- 81 (491)
T PRK14964 11 SFKDLVGQDVLVRILRNAFTLN--------KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKN- 81 (491)
T ss_pred CHHHhcCcHHHHHHHHHHHHcC--------CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhc-
Confidence 3578999999999998888743 22235999999999999999999998854322 11111 1111111
Q ss_pred ccccccc-CCCCCccccccCCchhHHHhhC----CCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEE
Q 002012 736 HSVSRLV-GAPPGYVGYEEGGQLTEVVRRR----PYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVI 810 (982)
Q Consensus 736 ~~~~~l~-g~~~g~vg~~~~~~l~~~l~~~----~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI 810 (982)
.....++ -...+..|.++.+.+.+.+... .+.|+||||+|.++...+|.|++.||+- ..+++||
T Consensus 82 ~~~~Dv~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEeP-----------p~~v~fI 150 (491)
T PRK14964 82 SNHPDVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEP-----------APHVKFI 150 (491)
T ss_pred cCCCCEEEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCC-----------CCCeEEE
Confidence 0111111 0111233434444455555433 3579999999999999999999999972 1468888
Q ss_pred EecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHHHHHHHHHhC
Q 002012 811 MTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQK 890 (982)
Q Consensus 811 ~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~~~~~~~~ 890 (982)
++|+.... +.+.+.+|| ..+.|.|++.+++.+.+...+++ .
T Consensus 151 latte~~K-------------------------------l~~tI~SRc-~~~~f~~l~~~el~~~L~~ia~~-------E 191 (491)
T PRK14964 151 LATTEVKK-------------------------------IPVTIISRC-QRFDLQKIPTDKLVEHLVDIAKK-------E 191 (491)
T ss_pred EEeCChHH-------------------------------HHHHHHHhh-eeeecccccHHHHHHHHHHHHHH-------c
Confidence 88863221 556889999 78999999999999988887775 3
Q ss_pred CCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHHH
Q 002012 891 KIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQL 925 (982)
Q Consensus 891 ~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~ 925 (982)
+ +.+++++++.|+..+ . .+.|.+.+.+++.
T Consensus 192 g--i~i~~eAL~lIa~~s-~--GslR~alslLdql 221 (491)
T PRK14964 192 N--IEHDEESLKLIAENS-S--GSMRNALFLLEQA 221 (491)
T ss_pred C--CCCCHHHHHHHHHHc-C--CCHHHHHHHHHHH
Confidence 4 789999999999863 2 3456666666653
No 167
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=99.59 E-value=1.2e-14 Score=166.82 Aligned_cols=217 Identities=20% Similarity=0.297 Sum_probs=170.2
Q ss_pred ccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccccccccCCC
Q 002012 666 IGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRLVGAP 745 (982)
Q Consensus 666 iGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l~g~~ 745 (982)
++.+..+..+...+.+... .. ..+++.|.|||||..+|++|++..- ...+|+.+||..+.+....+.|||..
T Consensus 316 ~~~d~s~a~l~rk~~rv~~------~~-~pvll~GEtGtGKe~laraiH~~s~-~~gpfvAvNCaAip~~liesELFGy~ 387 (606)
T COG3284 316 PLLDPSRATLLRKAERVAA------TD-LPVLLQGETGTGKEVLARAIHQNSE-AAGPFVAVNCAAIPEALIESELFGYV 387 (606)
T ss_pred cccCHHHHHHHHHHHHHhh------cC-CCeEecCCcchhHHHHHHHHHhccc-ccCCeEEEEeccchHHhhhHHHhccC
Confidence 5666666666666655421 11 2399999999999999999999875 67899999999998887778899877
Q ss_pred CC-ccccccCCchhHHHhhCCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCChHHHHHhh
Q 002012 746 PG-YVGYEEGGQLTEVVRRRPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETL 824 (982)
Q Consensus 746 ~g-~vg~~~~~~l~~~l~~~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~i~~~~ 824 (982)
+| +.|....+ -...+..++.+.+|+|||..|+-..|..||++|++|.++.-.|.. ..-++.||.+|+.+...++..
T Consensus 388 ~GafTga~~kG-~~g~~~~A~gGtlFldeIgd~p~~~Qs~LLrVl~e~~v~p~g~~~-~~vdirvi~ath~dl~~lv~~- 464 (606)
T COG3284 388 AGAFTGARRKG-YKGKLEQADGGTLFLDEIGDMPLALQSRLLRVLQEGVVTPLGGTR-IKVDIRVIAATHRDLAQLVEQ- 464 (606)
T ss_pred ccccccchhcc-ccccceecCCCccHHHHhhhchHHHHHHHHHHHhhCceeccCCcc-eeEEEEEEeccCcCHHHHHHc-
Confidence 66 34433333 345778889999999999999999999999999999999766665 446689999999988776653
Q ss_pred hhcccchHHHHHHHHHHHHHHHHhhcChHHHhcccc-ccccCCCCh-hHHHHHHHHHHHHHHHHHHhCCCCccCCHHHHH
Q 002012 825 QSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDE-YIVFQPLDS-KEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVT 902 (982)
Q Consensus 825 ~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~-ii~F~pl~~-~~l~~il~~~l~~~~~~~~~~~~~l~i~~~a~~ 902 (982)
+.|+.+|++|+.. .|..|||.+ .+....+...+.+ .....+.+++++++
T Consensus 465 -----------------------g~fredLyyrL~~~~i~lP~lr~R~d~~~~l~~~~~~------~~~~~~~l~~~~~~ 515 (606)
T COG3284 465 -----------------------GRFREDLYYRLNAFVITLPPLRERSDRIPLLDRILKR------ENDWRLQLDDDALA 515 (606)
T ss_pred -----------------------CCchHHHHHHhcCeeeccCchhcccccHHHHHHHHHH------ccCCCccCCHHHHH
Confidence 5599999999966 688888875 4444444444443 12355899999999
Q ss_pred HHHhcCCCCCCCchHHHHHHHH
Q 002012 903 LLGILGFDPNFGARPVKRVIQQ 924 (982)
Q Consensus 903 ~L~~~~~~~~~gaR~L~~~i~~ 924 (982)
.|..+.|++|. |+|.++|+.
T Consensus 516 ~l~~~~WPGNi--rel~~v~~~ 535 (606)
T COG3284 516 RLLAYRWPGNI--RELDNVIER 535 (606)
T ss_pred HHHhCCCCCcH--HHHHHHHHH
Confidence 99999999877 999999887
No 168
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.58 E-value=6.1e-15 Score=169.51 Aligned_cols=202 Identities=23% Similarity=0.395 Sum_probs=149.3
Q ss_pred hhcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCC----CceEEEe-ccccccc
Q 002012 661 LHKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTE----NALVRID-MSEYMEK 735 (982)
Q Consensus 661 l~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~----~~~v~i~-~s~~~~~ 735 (982)
.+.+++||+.+++.|.+++...+..+ .+||.||.|||||++||.+|+.+.+.+ .||..+. |-++..
T Consensus 14 ~F~evvGQe~v~~~L~nal~~~ri~h--------AYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~- 84 (515)
T COG2812 14 TFDDVVGQEHVVKTLSNALENGRIAH--------AYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINE- 84 (515)
T ss_pred cHHHhcccHHHHHHHHHHHHhCcchh--------hhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhc-
Confidence 45778999999999999998654432 399999999999999999999995543 3333221 111111
Q ss_pred cccccccC-CCCCccccccCCchhHHHhhCC----CeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEE
Q 002012 736 HSVSRLVG-APPGYVGYEEGGQLTEVVRRRP----YSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVI 810 (982)
Q Consensus 736 ~~~~~l~g-~~~g~vg~~~~~~l~~~l~~~~----~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI 810 (982)
....+++- ......|.++.+.|.+.+...| +.|++|||++.+....+|+||+.||+ ++.+++||
T Consensus 85 g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEE-----------PP~hV~FI 153 (515)
T COG2812 85 GSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEE-----------PPSHVKFI 153 (515)
T ss_pred CCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhccccc-----------CccCeEEE
Confidence 11122211 1123445555566666666544 67999999999999999999999997 35789999
Q ss_pred EecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHHHHHHHHHhC
Q 002012 811 MTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQK 890 (982)
Q Consensus 811 ~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~~~~~~~~ 890 (982)
++|+-..+ +++++++|| ..+.|..++.+++...+...+.+ .
T Consensus 154 lATTe~~K-------------------------------ip~TIlSRc-q~f~fkri~~~~I~~~L~~i~~~-------E 194 (515)
T COG2812 154 LATTEPQK-------------------------------IPNTILSRC-QRFDFKRLDLEEIAKHLAAILDK-------E 194 (515)
T ss_pred EecCCcCc-------------------------------Cchhhhhcc-ccccccCCCHHHHHHHHHHHHHh-------c
Confidence 98875433 788999999 79999999999999888888775 4
Q ss_pred CCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHHHH
Q 002012 891 KIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLV 926 (982)
Q Consensus 891 ~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~l 926 (982)
+ +.++++++..++..+ +-++|+.-+++.+.+
T Consensus 195 ~--I~~e~~aL~~ia~~a---~Gs~RDalslLDq~i 225 (515)
T COG2812 195 G--INIEEDALSLIARAA---EGSLRDALSLLDQAI 225 (515)
T ss_pred C--CccCHHHHHHHHHHc---CCChhhHHHHHHHHH
Confidence 4 889999999998862 335677777766643
No 169
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=1.3e-14 Score=155.78 Aligned_cols=205 Identities=21% Similarity=0.279 Sum_probs=147.2
Q ss_pred hcccccchHHHHHHHHHHHH------HhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccc
Q 002012 662 HKRVIGQDIAVKSVADAIRR------SRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEK 735 (982)
Q Consensus 662 ~~~iiGq~~a~~~l~~~i~~------~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~ 735 (982)
+.+|.|..+|++.|.+++.. ...|+. +|--.+|++||||||||.+|+++|... +..|..|..+.+..+
T Consensus 211 W~DIagl~~AK~lL~EAVvlPi~mPe~F~Gir---rPWkgvLm~GPPGTGKTlLAKAvATEc---~tTFFNVSsstltSK 284 (491)
T KOG0738|consen 211 WDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIR---RPWKGVLMVGPPGTGKTLLAKAVATEC---GTTFFNVSSSTLTSK 284 (491)
T ss_pred hHhhcchHHHHHHHHHHHhhhhhhHHHHhhcc---cccceeeeeCCCCCcHHHHHHHHHHhh---cCeEEEechhhhhhh
Confidence 57899999999999999843 223443 444459999999999999999999987 667776666655432
Q ss_pred cccccccCCCCCccccccC--CchhHHHhhCCCeEEEEccccccC------------HHHHHHHHHhhhcCceecCCCcE
Q 002012 736 HSVSRLVGAPPGYVGYEEG--GQLTEVVRRRPYSVVLFDEIEKAH------------QDVFNILLQLLDDGRITDSQGRT 801 (982)
Q Consensus 736 ~~~~~l~g~~~g~vg~~~~--~~l~~~l~~~~~~Vl~lDEidkl~------------~~~~~~Ll~~le~g~~~d~~g~~ 801 (982)
|.|..+. +.|++..+.+.+++|||||||.+. ..+-+.||..||. . +..
T Consensus 285 ------------wRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG-~-----~~t 346 (491)
T KOG0738|consen 285 ------------WRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDG-V-----QGT 346 (491)
T ss_pred ------------hccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhc-c-----ccc
Confidence 5555443 568899999999999999999873 3488889998883 1 122
Q ss_pred EecccE-EEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHH
Q 002012 802 VSFTNC-VVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQM 880 (982)
Q Consensus 802 ~~~~~~-iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l 880 (982)
...+++ .++++||.+.+ ++.+|+.||...|..+-++.+....+++..|
T Consensus 347 ~e~~k~VmVLAATN~PWd-------------------------------iDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l 395 (491)
T KOG0738|consen 347 LENSKVVMVLAATNFPWD-------------------------------IDEALRRRLEKRIYIPLPDAEARSALIKILL 395 (491)
T ss_pred cccceeEEEEeccCCCcc-------------------------------hHHHHHHHHhhheeeeCCCHHHHHHHHHHhh
Confidence 222344 45557888765 5668889997788888888888888888877
Q ss_pred HHHHHHHHhCCCCccCCHHH-HHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHH
Q 002012 881 NRVKDRLKQKKIDLHYTKEA-VTLLGILGFDPNFGARPVKRVIQQLVENEIAVAI 934 (982)
Q Consensus 881 ~~~~~~~~~~~~~l~i~~~a-~~~L~~~~~~~~~gaR~L~~~i~~~l~~~la~~~ 934 (982)
.. ...++++ ++.|++. ...|.+.++.++++..-.+++-+.+
T Consensus 396 ~~-----------~~~~~~~~~~~lae~--~eGySGaDI~nvCreAsm~~mRR~i 437 (491)
T KOG0738|consen 396 RS-----------VELDDPVNLEDLAER--SEGYSGADITNVCREASMMAMRRKI 437 (491)
T ss_pred cc-----------ccCCCCccHHHHHHH--hcCCChHHHHHHHHHHHHHHHHHHH
Confidence 64 3333332 4556654 2235557899999998888885443
No 170
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=2.2e-13 Score=163.94 Aligned_cols=203 Identities=22% Similarity=0.209 Sum_probs=148.7
Q ss_pred hhhHHHhhcCCCCCcccchHHHHHHHHHhccCCCCC-cEEeCCCCCcHHHHHHHHHHHhhcCCCCCCC------------
Q 002012 257 NDLTELARSGKLDPVIGRDDEIRRCIQILSRRTKNN-PVIIGEPGVGKTAIAEGLAQRIVRGDVPETL------------ 323 (982)
Q Consensus 257 ~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~-iLL~GppGvGKT~la~~la~~l~~~~~p~~l------------ 323 (982)
..|.++|||.+|+++||+++.++.+...+..+...| +||+||+|+|||++|+.+|+.+.+.......
T Consensus 4 ~~l~~kyRP~~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i 83 (585)
T PRK14950 4 QVLYRKWRSQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAI 83 (585)
T ss_pred HHHHHHhCCCCHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHH
Confidence 347899999999999999999999998887766555 5899999999999999999998643210000
Q ss_pred ---CCCeEEEEecccccccccccccHHHHHHHHHHHHHhc---CCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcC-
Q 002012 324 ---QNRKLISLDMASLVAGTCYRGDFEKRLKAVLKEVTKS---NGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGR- 396 (982)
Q Consensus 324 ---~~~~v~~l~~~~l~~~~~~~g~~e~~l~~l~~~~~~~---~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~- 396 (982)
.+..++.++.+.. . ..+.++++++.+... ....|+||||+|.|. .+..+.|+..++.
T Consensus 84 ~~~~~~d~~~i~~~~~------~--~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~--------~~a~naLLk~LEep 147 (585)
T PRK14950 84 AEGSAVDVIEMDAASH------T--SVDDAREIIERVQFRPALARYKVYIIDEVHMLS--------TAAFNALLKTLEEP 147 (585)
T ss_pred hcCCCCeEEEEecccc------C--CHHHHHHHHHHHhhCcccCCeEEEEEeChHhCC--------HHHHHHHHHHHhcC
Confidence 0123444443211 1 122345555544421 345699999999986 4566778888875
Q ss_pred -CCeEEEEecCchhHhhhhhcChHHHhccceEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccC
Q 002012 397 -GELRCIGATTLNEYRNYIEKDPALERRFQQVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITER 475 (982)
Q Consensus 397 -g~i~vI~at~~~~~~~~~~~d~al~rRf~~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~ 475 (982)
..+.||++++... .+.+.+++||..+.|..++..++..+++.+..+ .++.++++++..++.++++
T Consensus 148 p~~tv~Il~t~~~~-----kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~----egl~i~~eal~~La~~s~G----- 213 (585)
T PRK14950 148 PPHAIFILATTEVH-----KVPATILSRCQRFDFHRHSVADMAAHLRKIAAA----EGINLEPGALEAIARAATG----- 213 (585)
T ss_pred CCCeEEEEEeCChh-----hhhHHHHhccceeeCCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCC-----
Confidence 5777888776654 467889999999999999999999988877766 5888999999999998764
Q ss_pred CCcchhhHHHHHHHH
Q 002012 476 FLPDKAIDLVDEAAA 490 (982)
Q Consensus 476 ~~p~~a~~lld~a~~ 490 (982)
.+..+++.++....
T Consensus 214 -dlr~al~~LekL~~ 227 (585)
T PRK14950 214 -SMRDAENLLQQLAT 227 (585)
T ss_pred -CHHHHHHHHHHHHH
Confidence 34778888876554
No 171
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.57 E-value=3.3e-14 Score=172.46 Aligned_cols=178 Identities=26% Similarity=0.340 Sum_probs=135.2
Q ss_pred CCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccccccccccHHHHHHHHHHHHHhcCCCeEEEE
Q 002012 289 TKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFI 368 (982)
Q Consensus 289 ~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~I 368 (982)
.+.+++|+||||||||+++++++..+ +.+++.++.+++.. .+.|.....++.+|..+.. ..|+||||
T Consensus 184 ~~~gill~G~~G~GKt~~~~~~a~~~----------~~~f~~is~~~~~~--~~~g~~~~~~~~~f~~a~~-~~P~IifI 250 (644)
T PRK10733 184 IPKGVLMVGPPGTGKTLLAKAIAGEA----------KVPFFTISGSDFVE--MFVGVGASRVRDMFEQAKK-AAPCIIFI 250 (644)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHc----------CCCEEEEehHHhHH--hhhcccHHHHHHHHHHHHh-cCCcEEEe
Confidence 35679999999999999999999988 88999999887774 4677778888999988875 56889999
Q ss_pred ccchhhhhCCCC---Cch---hhHHHHHHhhhc----CCCeEEEEecCchhHhhhhhcChHHHh--ccc-eEEecCCCHH
Q 002012 369 DELHTIIGAGNQ---SGA---MDASNMLKPMLG----RGELRCIGATTLNEYRNYIEKDPALER--RFQ-QVFCDQPSVE 435 (982)
Q Consensus 369 DEi~~l~~~~~~---~~~---~~~~~~L~~~le----~g~i~vI~at~~~~~~~~~~~d~al~r--Rf~-~i~i~~Ps~~ 435 (982)
||+|.+...+.. .+. ....+.|+..++ +..+.+|+|||+++ .+||++.| ||+ .|.|+.|+.+
T Consensus 251 DEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~-----~lD~Al~RpgRfdr~i~v~~Pd~~ 325 (644)
T PRK10733 251 DEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPD-----VLDPALLRPGRFDRQVVVGLPDVR 325 (644)
T ss_pred hhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChh-----hcCHHHhCCcccceEEEcCCCCHH
Confidence 999999765432 111 224444544444 45789999999999 79999998 996 9999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCCcchhhHHHHHHHHHhhh
Q 002012 436 NTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLPDKAIDLVDEAAAKLKM 494 (982)
Q Consensus 436 e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~p~~a~~lld~a~~~~~~ 494 (982)
++.+||+.+..+.....+ + .+..++.. +..+.+.+...++.+|+..+..
T Consensus 326 ~R~~Il~~~~~~~~l~~~--~---d~~~la~~-----t~G~sgadl~~l~~eAa~~a~r 374 (644)
T PRK10733 326 GREQILKVHMRRVPLAPD--I---DAAIIARG-----TPGFSGADLANLVNEAALFAAR 374 (644)
T ss_pred HHHHHHHHHhhcCCCCCc--C---CHHHHHhh-----CCCCCHHHHHHHHHHHHHHHHH
Confidence 999999887766321111 1 12334444 4456788999999999876553
No 172
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.57 E-value=2.6e-14 Score=177.54 Aligned_cols=179 Identities=20% Similarity=0.290 Sum_probs=131.1
Q ss_pred CcccchHHHHHHHHHhcc------CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccc-----
Q 002012 270 PVIGRDDEIRRCIQILSR------RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVA----- 338 (982)
Q Consensus 270 ~liG~~~~i~~l~~~L~~------~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~----- 338 (982)
+++|+++..+++.+.+.. ....+++|+||||||||++|+++|+.+ +.+++.++++.+..
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l----------~~~~~~i~~~~~~~~~~i~ 390 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL----------NRKFVRFSLGGVRDEAEIR 390 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh----------cCCeEEEeCCCcccHHHHc
Confidence 488999988888875432 134479999999999999999999998 77888887654321
Q ss_pred --cccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcC-----------------CCe
Q 002012 339 --GTCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGR-----------------GEL 399 (982)
Q Consensus 339 --~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~-----------------g~i 399 (982)
...|.|...+++...+..+.. ..+ |+||||||.+.+..+ .+..+.|+++++. +++
T Consensus 391 g~~~~~~g~~~g~i~~~l~~~~~-~~~-villDEidk~~~~~~----~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v 464 (775)
T TIGR00763 391 GHRRTYVGAMPGRIIQGLKKAKT-KNP-LFLLDEIDKIGSSFR----GDPASALLEVLDPEQNNAFSDHYLDVPFDLSKV 464 (775)
T ss_pred CCCCceeCCCCchHHHHHHHhCc-CCC-EEEEechhhcCCccC----CCHHHHHHHhcCHHhcCccccccCCceeccCCE
Confidence 134666666666666665543 233 899999999975322 1334566666642 468
Q ss_pred EEEEecCchhHhhhhhcChHHHhccceEEecCCCHHHHHHHHHHHH-HHHhhhc-----CCccChHHHHHHHHHhh
Q 002012 400 RCIGATTLNEYRNYIEKDPALERRFQQVFCDQPSVENTISILRGLR-ERYELHH-----GVKISDSALVSAAVLAD 469 (982)
Q Consensus 400 ~vI~at~~~~~~~~~~~d~al~rRf~~i~i~~Ps~~e~~~IL~~~~-~~~~~~~-----~v~i~~~~l~~~~~~s~ 469 (982)
.+|+|||... .++++|++||..|.++.|+.+++..|++... .+....+ ++.++++++..++....
T Consensus 465 ~~I~TtN~~~-----~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~ 535 (775)
T TIGR00763 465 IFIATANSID-----TIPRPLLDRMEVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYT 535 (775)
T ss_pred EEEEecCCch-----hCCHHHhCCeeEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcC
Confidence 8999999876 7899999999999999999999999997644 3322222 46799999999887533
No 173
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.57 E-value=9.6e-13 Score=158.63 Aligned_cols=212 Identities=21% Similarity=0.328 Sum_probs=139.8
Q ss_pred hhcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhc-------CCCCceEEEeccccc
Q 002012 661 LHKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLF-------NTENALVRIDMSEYM 733 (982)
Q Consensus 661 l~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~-------~~~~~~v~i~~s~~~ 733 (982)
-+..++||+.+++.+...+.. ..+ .+++|+||||||||++|+.+++... ..+.+|+.+||..+.
T Consensus 152 ~~~~iiGqs~~~~~l~~~ia~--------~~~-~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~ 222 (615)
T TIGR02903 152 AFSEIVGQERAIKALLAKVAS--------PFP-QHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLR 222 (615)
T ss_pred cHHhceeCcHHHHHHHHHHhc--------CCC-CeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhcc
Confidence 446799999999987665531 112 2599999999999999999998762 125679999998763
Q ss_pred cc-ccc-ccccCCCCC--ccccc-------cCCchhHHHhhCCCeEEEEccccccCHHHHHHHHHhhhcCceecCCC---
Q 002012 734 EK-HSV-SRLVGAPPG--YVGYE-------EGGQLTEVVRRRPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQG--- 799 (982)
Q Consensus 734 ~~-~~~-~~l~g~~~g--~vg~~-------~~~~l~~~l~~~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g--- 799 (982)
.. ..+ ..++|.... +.+.. ......+.+....++||||||++.+++..|+.|+.+|+++++....+
T Consensus 223 ~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~ 302 (615)
T TIGR02903 223 WDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYD 302 (615)
T ss_pred CCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceec
Confidence 11 011 123332110 10000 00011223445667899999999999999999999999887532111
Q ss_pred ---cE-----------EecccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccC
Q 002012 800 ---RT-----------VSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQ 865 (982)
Q Consensus 800 ---~~-----------~~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~ 865 (982)
.. ....++++|++|+.... .+.+.|.+||. .+.|+
T Consensus 303 ~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~------------------------------~l~~aLrSR~~-~i~~~ 351 (615)
T TIGR02903 303 PDDPNVPKYIKKLFEEGAPADFVLIGATTRDPE------------------------------EINPALRSRCA-EVFFE 351 (615)
T ss_pred cCCcccchhhhhhcccCccceEEEEEecccccc------------------------------ccCHHHHhcee-EEEeC
Confidence 00 01234666665554321 15678999995 67899
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhCCCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHHH
Q 002012 866 PLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQL 925 (982)
Q Consensus 866 pl~~~~l~~il~~~l~~~~~~~~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~ 925 (982)
|++.+++..|+...+.+ .+ +.+++++++.|..+.|+. |..-+.+...
T Consensus 352 pls~edi~~Il~~~a~~-------~~--v~ls~eal~~L~~ys~~g----Rraln~L~~~ 398 (615)
T TIGR02903 352 PLTPEDIALIVLNAAEK-------IN--VHLAAGVEELIARYTIEG----RKAVNILADV 398 (615)
T ss_pred CCCHHHHHHHHHHHHHH-------cC--CCCCHHHHHHHHHCCCcH----HHHHHHHHHH
Confidence 99999999999987664 23 568999999999988743 4444555544
No 174
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.57 E-value=1.7e-14 Score=170.30 Aligned_cols=201 Identities=19% Similarity=0.305 Sum_probs=134.8
Q ss_pred hhcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCC----ceEEEe-ccccccc
Q 002012 661 LHKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTEN----ALVRID-MSEYMEK 735 (982)
Q Consensus 661 l~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~----~~v~i~-~s~~~~~ 735 (982)
-+.+|+||+++++.|.+++... +....+||+||+|||||++|+++|+.+++... ++..+. |..+ ..
T Consensus 14 tFddIIGQe~vv~~L~~ai~~~--------rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i-~~ 84 (709)
T PRK08691 14 TFADLVGQEHVVKALQNALDEG--------RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQI-DA 84 (709)
T ss_pred CHHHHcCcHHHHHHHHHHHHcC--------CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHH-hc
Confidence 3578999999999999988742 22234899999999999999999999865321 111111 1001 00
Q ss_pred cccccccC-CCCCccccccCCchhHHHhh----CCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEE
Q 002012 736 HSVSRLVG-APPGYVGYEEGGQLTEVVRR----RPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVI 810 (982)
Q Consensus 736 ~~~~~l~g-~~~g~vg~~~~~~l~~~l~~----~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI 810 (982)
..+..++- ......|.+..+.+.+.+.. ..+.||||||+|+++...++.|++.||+- ..+++||
T Consensus 85 g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEP-----------p~~v~fI 153 (709)
T PRK08691 85 GRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEP-----------PEHVKFI 153 (709)
T ss_pred cCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhC-----------CCCcEEE
Confidence 00111110 00111222222223333322 34579999999999999999999999962 1357888
Q ss_pred EecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHHHHHHHHHhC
Q 002012 811 MTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQK 890 (982)
Q Consensus 811 ~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~~~~~~~~ 890 (982)
++|+.... +.+.+++|| ..+.|.+++.+++...+...+.. .
T Consensus 154 LaTtd~~k-------------------------------L~~TIrSRC-~~f~f~~Ls~eeI~~~L~~Il~k-------E 194 (709)
T PRK08691 154 LATTDPHK-------------------------------VPVTVLSRC-LQFVLRNMTAQQVADHLAHVLDS-------E 194 (709)
T ss_pred EEeCCccc-------------------------------cchHHHHHH-hhhhcCCCCHHHHHHHHHHHHHH-------c
Confidence 88875332 566788999 78999999999999988877765 4
Q ss_pred CCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHHH
Q 002012 891 KIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQL 925 (982)
Q Consensus 891 ~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~ 925 (982)
+ +.+++++++.|+..+ . .+.|.+.+.+++.
T Consensus 195 g--i~id~eAL~~Ia~~A-~--GslRdAlnLLDqa 224 (709)
T PRK08691 195 K--IAYEPPALQLLGRAA-A--GSMRDALSLLDQA 224 (709)
T ss_pred C--CCcCHHHHHHHHHHh-C--CCHHHHHHHHHHH
Confidence 4 778999999999864 2 3457777776653
No 175
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=2.6e-14 Score=162.64 Aligned_cols=199 Identities=18% Similarity=0.263 Sum_probs=130.6
Q ss_pred hcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCC----CceEEE-ecccccccc
Q 002012 662 HKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTE----NALVRI-DMSEYMEKH 736 (982)
Q Consensus 662 ~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~----~~~v~i-~~s~~~~~~ 736 (982)
+++|+||+++++.+.+++... +....+||+||+|+|||++|+++|+.+.+.. .++..+ .|.++.. .
T Consensus 15 ~~~iiGq~~~~~~l~~~~~~~--------~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~-~ 85 (363)
T PRK14961 15 FRDIIGQKHIVTAISNGLSLG--------RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEK-G 85 (363)
T ss_pred hhhccChHHHHHHHHHHHHcC--------CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhc-C
Confidence 478999999999998888732 1122379999999999999999999985421 111110 1111111 0
Q ss_pred ccccccC-CCCCccccccCCchhHHHhhC----CCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEE
Q 002012 737 SVSRLVG-APPGYVGYEEGGQLTEVVRRR----PYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIM 811 (982)
Q Consensus 737 ~~~~l~g-~~~g~vg~~~~~~l~~~l~~~----~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~ 811 (982)
.+..++. .+....+.+..+.+.+.+... .+.|+||||+|+++...++.|++.+|+.. .+++||+
T Consensus 86 ~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~-----------~~~~fIl 154 (363)
T PRK14961 86 LCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPP-----------QHIKFIL 154 (363)
T ss_pred CCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCC-----------CCeEEEE
Confidence 0111110 011112222222333333332 35699999999999999999999999721 3577888
Q ss_pred ecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHHHHHHHHHhCC
Q 002012 812 TSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKK 891 (982)
Q Consensus 812 tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~~~~~~~~~ 891 (982)
+|+.... +.+.+.+|| ..+.|.|++.+++.+++...++. .+
T Consensus 155 ~t~~~~~-------------------------------l~~tI~SRc-~~~~~~~l~~~el~~~L~~~~~~-------~g 195 (363)
T PRK14961 155 ATTDVEK-------------------------------IPKTILSRC-LQFKLKIISEEKIFNFLKYILIK-------ES 195 (363)
T ss_pred EcCChHh-------------------------------hhHHHHhhc-eEEeCCCCCHHHHHHHHHHHHHH-------cC
Confidence 8764221 567889999 78999999999999888877765 34
Q ss_pred CCccCCHHHHHHHHhcCCCCCCCchHHHHHHHH
Q 002012 892 IDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQ 924 (982)
Q Consensus 892 ~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~ 924 (982)
+.++++++++|+..+ . .+.|...+.+++
T Consensus 196 --~~i~~~al~~ia~~s-~--G~~R~al~~l~~ 223 (363)
T PRK14961 196 --IDTDEYALKLIAYHA-H--GSMRDALNLLEH 223 (363)
T ss_pred --CCCCHHHHHHHHHHc-C--CCHHHHHHHHHH
Confidence 678999999998863 1 234665565555
No 176
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=5.3e-14 Score=151.16 Aligned_cols=206 Identities=19% Similarity=0.232 Sum_probs=138.6
Q ss_pred HHHHHHhhhcccccccCCCCchhHH---HHHhhhhhHHHh----h-cCCCCCcccchHHHHHHHHHhc--------cCCC
Q 002012 227 LKDAVKAVRGHQRVTDQNPEGKYQA---LEKYGNDLTELA----R-SGKLDPVIGRDDEIRRCIQILS--------RRTK 290 (982)
Q Consensus 227 l~~~i~~~~~~~~~~~~~~~~~~~~---l~~~~~~l~~~~----~-~~~l~~liG~~~~i~~l~~~L~--------~~~~ 290 (982)
....|.++.|.+.....++.+.+++ +..+..++.-.. + .+.|++||-.-..-+++-++.. +...
T Consensus 305 ~w~yi~r~LGqPSLiREsSrg~~pw~gsls~~k~~i~~~~~~s~~gk~pl~~ViL~psLe~Rie~lA~aTaNTK~h~apf 384 (630)
T KOG0742|consen 305 TWRYIERRLGQPSLIRESSRGRFPWIGSLSALKHPIQGSRSASSRGKDPLEGVILHPSLEKRIEDLAIATANTKKHQAPF 384 (630)
T ss_pred HHHHHHHHcCCchhhhhhccccCCCcccHHHHhchhhhhHhhhhcCCCCcCCeecCHHHHHHHHHHHHHhcccccccchh
Confidence 4555666666665544444433332 344444442211 1 2347777776544344433221 1355
Q ss_pred CCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccccccccccHHHHHHHHHHHHHhcCCCeEEEEcc
Q 002012 291 NNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFIDE 370 (982)
Q Consensus 291 ~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDE 370 (982)
+|++||||||||||++|+.||+.- |..+--+.-+++ .....+...++.++|+.++.++.+.+|||||
T Consensus 385 RNilfyGPPGTGKTm~ArelAr~S----------GlDYA~mTGGDV---APlG~qaVTkiH~lFDWakkS~rGLllFIDE 451 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMFARELARHS----------GLDYAIMTGGDV---APLGAQAVTKIHKLFDWAKKSRRGLLLFIDE 451 (630)
T ss_pred hheeeeCCCCCCchHHHHHHHhhc----------CCceehhcCCCc---cccchHHHHHHHHHHHHHhhcccceEEEehh
Confidence 799999999999999999999865 333222221111 1223456778999999999989999999999
Q ss_pred chhhhhCCCCCchhh----HHHH-HHhhhc-CCCeEEEEecCchhHhhhhhcChHHHhccc-eEEecCCCHHHHHHHHHH
Q 002012 371 LHTIIGAGNQSGAMD----ASNM-LKPMLG-RGELRCIGATTLNEYRNYIEKDPALERRFQ-QVFCDQPSVENTISILRG 443 (982)
Q Consensus 371 i~~l~~~~~~~~~~~----~~~~-L~~~le-~g~i~vI~at~~~~~~~~~~~d~al~rRf~-~i~i~~Ps~~e~~~IL~~ 443 (982)
+|.+...++..+-.+ +.|. |...-+ ..+|.++.+||.+. .+|.++-.|++ .|+|+.|-.+++..+|+.
T Consensus 452 ADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlAtNrpg-----dlDsAV~DRide~veFpLPGeEERfkll~l 526 (630)
T KOG0742|consen 452 ADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLATNRPG-----DLDSAVNDRIDEVVEFPLPGEEERFKLLNL 526 (630)
T ss_pred hHHHHHHhchhhhcHHHHHHHHHHHHHhcccccceEEEeccCCcc-----chhHHHHhhhhheeecCCCChHHHHHHHHH
Confidence 999988776554322 2222 222223 56899999999999 89999999997 999999999999999999
Q ss_pred HHHHHhh
Q 002012 444 LRERYEL 450 (982)
Q Consensus 444 ~~~~~~~ 450 (982)
++++|-.
T Consensus 527 Ylnkyi~ 533 (630)
T KOG0742|consen 527 YLNKYIL 533 (630)
T ss_pred HHHHHhc
Confidence 9998743
No 177
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.56 E-value=1.4e-13 Score=155.07 Aligned_cols=194 Identities=18% Similarity=0.263 Sum_probs=135.5
Q ss_pred hcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccccccc
Q 002012 662 HKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRL 741 (982)
Q Consensus 662 ~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l 741 (982)
+.+++||++.++.+...+...+.. ..+..+++|+||||||||++|+++|+.+ +..+..++++.+..
T Consensus 24 ~~~~vG~~~~~~~l~~~l~~~~~~----~~~~~~~ll~GppG~GKT~la~~ia~~l---~~~~~~~~~~~~~~------- 89 (328)
T PRK00080 24 LDEFIGQEKVKENLKIFIEAAKKR----GEALDHVLLYGPPGLGKTTLANIIANEM---GVNIRITSGPALEK------- 89 (328)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHhc----CCCCCcEEEECCCCccHHHHHHHHHHHh---CCCeEEEecccccC-------
Confidence 467999999999998888755322 2344569999999999999999999998 44444444332211
Q ss_pred cCCCCCccccccCCchhHHHhh-CCCeEEEEccccccCHHHHHHHHHhhhcCceec--CCC---cE--EecccEEEEEec
Q 002012 742 VGAPPGYVGYEEGGQLTEVVRR-RPYSVVLFDEIEKAHQDVFNILLQLLDDGRITD--SQG---RT--VSFTNCVVIMTS 813 (982)
Q Consensus 742 ~g~~~g~vg~~~~~~l~~~l~~-~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d--~~g---~~--~~~~~~iiI~ts 813 (982)
.+.+...+.. ..++||||||||.+++..++.|+..|++..+.. ..+ .. .....+++|++|
T Consensus 90 ------------~~~l~~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at 157 (328)
T PRK00080 90 ------------PGDLAAILTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGAT 157 (328)
T ss_pred ------------hHHHHHHHHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeec
Confidence 0113333332 346799999999999999999999998765321 111 11 123456788888
Q ss_pred CCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHHHHHHHHHhCCCC
Q 002012 814 NIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKID 893 (982)
Q Consensus 814 n~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~~~~~~~~~~~ 893 (982)
|.... +.+++.+||..++.|.|++.+++.+|+...+.. . .
T Consensus 158 ~~~~~-------------------------------l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~-------~--~ 197 (328)
T PRK00080 158 TRAGL-------------------------------LTSPLRDRFGIVQRLEFYTVEELEKIVKRSARI-------L--G 197 (328)
T ss_pred CCccc-------------------------------CCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHH-------c--C
Confidence 75421 677899999888999999999999999977664 2 3
Q ss_pred ccCCHHHHHHHHhcCCCCCCCchHHHHHHHH
Q 002012 894 LHYTKEAVTLLGILGFDPNFGARPVKRVIQQ 924 (982)
Q Consensus 894 l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~ 924 (982)
+.++++++++|+..+- +. .|-+.+.+++
T Consensus 198 ~~~~~~~~~~ia~~~~-G~--pR~a~~~l~~ 225 (328)
T PRK00080 198 VEIDEEGALEIARRSR-GT--PRIANRLLRR 225 (328)
T ss_pred CCcCHHHHHHHHHHcC-CC--chHHHHHHHH
Confidence 7799999999998742 11 2445555544
No 178
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.56 E-value=3e-14 Score=138.02 Aligned_cols=121 Identities=31% Similarity=0.484 Sum_probs=98.5
Q ss_pred cEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccccccccccHHHHHHHHHHHHHhcCCCeEEEEccch
Q 002012 293 PVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFIDELH 372 (982)
Q Consensus 293 iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~ 372 (982)
+||+||||||||++|+.+|+.+ +.+++.+++..+.+ .+.++....+..++..+.....++||||||+|
T Consensus 1 ill~G~~G~GKT~l~~~la~~l----------~~~~~~i~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d 68 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL----------GFPFIEIDGSELIS--SYAGDSEQKIRDFFKKAKKSAKPCVLFIDEID 68 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT----------TSEEEEEETTHHHT--SSTTHHHHHHHHHHHHHHHTSTSEEEEEETGG
T ss_pred CEEECcCCCCeeHHHHHHHhhc----------cccccccccccccc--ccccccccccccccccccccccceeeeeccch
Confidence 5899999999999999999998 89999999998883 47889999999999998874447999999999
Q ss_pred hhhhCCCCC---chhhHHHHHHhhhc-----CCCeEEEEecCchhHhhhhhcChHHH-hccc-eEEec
Q 002012 373 TIIGAGNQS---GAMDASNMLKPMLG-----RGELRCIGATTLNEYRNYIEKDPALE-RRFQ-QVFCD 430 (982)
Q Consensus 373 ~l~~~~~~~---~~~~~~~~L~~~le-----~g~i~vI~at~~~~~~~~~~~d~al~-rRf~-~i~i~ 430 (982)
.+....+.. ....+.+.|...++ .+++.+|++||..+ .+++++. +||+ .++++
T Consensus 69 ~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~-----~i~~~l~~~rf~~~i~~~ 131 (132)
T PF00004_consen 69 KLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPD-----KIDPALLRSRFDRRIEFP 131 (132)
T ss_dssp GTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGG-----GSCHHHHSTTSEEEEEE-
T ss_pred hcccccccccccccccccceeeecccccccccccceeEEeeCChh-----hCCHhHHhCCCcEEEEcC
Confidence 998776211 23445566666665 24699999999977 8999999 9997 55554
No 179
>PRK04132 replication factor C small subunit; Provisional
Probab=99.56 E-value=9.3e-12 Score=151.74 Aligned_cols=160 Identities=21% Similarity=0.300 Sum_probs=118.0
Q ss_pred eEEeec--CCCCchHHHHHHHHHHhcCC--CCceEEEeccccccccccccccCCCCCccccccCCchhHHHhh-----CC
Q 002012 695 SFMFMG--PTGVGKTELGKALADFLFNT--ENALVRIDMSEYMEKHSVSRLVGAPPGYVGYEEGGQLTEVVRR-----RP 765 (982)
Q Consensus 695 ~lLf~G--p~GtGKT~lA~~la~~l~~~--~~~~v~i~~s~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~-----~~ 765 (982)
+-++.| |++.|||++|++||+.+|+. +.+++.+|+++......+..++. +.... .+
T Consensus 566 ~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR~iIk---------------~~a~~~~~~~~~ 630 (846)
T PRK04132 566 HNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIREKVK---------------EFARTKPIGGAS 630 (846)
T ss_pred hhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHHHHHH---------------HHHhcCCcCCCC
Confidence 355678 99999999999999999875 45789999998533222222211 11111 13
Q ss_pred CeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHH
Q 002012 766 YSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVEL 845 (982)
Q Consensus 766 ~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 845 (982)
+.|+||||+|.|+.+.|++|+++||+- ..+++||++||....
T Consensus 631 ~KVvIIDEaD~Lt~~AQnALLk~lEep-----------~~~~~FILi~N~~~k--------------------------- 672 (846)
T PRK04132 631 FKIIFLDEADALTQDAQQALRRTMEMF-----------SSNVRFILSCNYSSK--------------------------- 672 (846)
T ss_pred CEEEEEECcccCCHHHHHHHHHHhhCC-----------CCCeEEEEEeCChhh---------------------------
Confidence 469999999999999999999999962 146899999997543
Q ss_pred HHhhcChHHHhccccccccCCCChhHHHHHHHHHHHHHHHHHHhCCCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHH
Q 002012 846 ARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQ 924 (982)
Q Consensus 846 ~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~~~~~~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~ 924 (982)
+.+++.+|| .++.|+|++.+++...+...+.+ .+ +.+++++++.|+..+ .+ ..|..-+.++.
T Consensus 673 ----Ii~tIrSRC-~~i~F~~ls~~~i~~~L~~I~~~-------Eg--i~i~~e~L~~Ia~~s-~G--DlR~AIn~Lq~ 734 (846)
T PRK04132 673 ----IIEPIQSRC-AIFRFRPLRDEDIAKRLRYIAEN-------EG--LELTEEGLQAILYIA-EG--DMRRAINILQA 734 (846)
T ss_pred ----CchHHhhhc-eEEeCCCCCHHHHHHHHHHHHHh-------cC--CCCCHHHHHHHHHHc-CC--CHHHHHHHHHH
Confidence 667899999 79999999999999888777654 34 668899999998763 22 23554455444
No 180
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=3.9e-14 Score=164.77 Aligned_cols=198 Identities=22% Similarity=0.366 Sum_probs=129.8
Q ss_pred hcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCC----CceEEEe-ccccccc-
Q 002012 662 HKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTE----NALVRID-MSEYMEK- 735 (982)
Q Consensus 662 ~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~----~~~v~i~-~s~~~~~- 735 (982)
+.+++||++++..+..++... +...++||+||||||||++|+++|+.+.+.. .++..++ |..+...
T Consensus 13 ~~divGq~~i~~~L~~~i~~~--------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~ 84 (472)
T PRK14962 13 FSEVVGQDHVKKLIINALKKN--------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGT 84 (472)
T ss_pred HHHccCcHHHHHHHHHHHHcC--------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCC
Confidence 478999999999888877632 2223489999999999999999999985422 1111111 0000000
Q ss_pred c-ccccccCCCCCccccccCCchhHHHhhC----CCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEE
Q 002012 736 H-SVSRLVGAPPGYVGYEEGGQLTEVVRRR----PYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVI 810 (982)
Q Consensus 736 ~-~~~~l~g~~~g~vg~~~~~~l~~~l~~~----~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI 810 (982)
+ .+..+ . .....|.+..+.+.+.+... .+.||||||+|.+..+.++.|+..|++. ..+++||
T Consensus 85 ~~dv~el-~-aa~~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p-----------~~~vv~I 151 (472)
T PRK14962 85 FMDVIEL-D-AASNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEP-----------PSHVVFV 151 (472)
T ss_pred CCccEEE-e-CcccCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhC-----------CCcEEEE
Confidence 0 00001 0 01112222222333433332 3579999999999999999999999962 1357788
Q ss_pred EecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHHHHHHHHHhC
Q 002012 811 MTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQK 890 (982)
Q Consensus 811 ~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~~~~~~~~ 890 (982)
++|+.... +.+++.+|| .++.|.|++.+++..++...+.. .
T Consensus 152 lattn~~k-------------------------------l~~~L~SR~-~vv~f~~l~~~el~~~L~~i~~~-------e 192 (472)
T PRK14962 152 LATTNLEK-------------------------------VPPTIISRC-QVIEFRNISDELIIKRLQEVAEA-------E 192 (472)
T ss_pred EEeCChHh-------------------------------hhHHHhcCc-EEEEECCccHHHHHHHHHHHHHH-------c
Confidence 77763211 567899999 68999999999998888877754 3
Q ss_pred CCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHH
Q 002012 891 KIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQ 924 (982)
Q Consensus 891 ~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~ 924 (982)
+ +.++++++++|+..+ +.++|.+-+.++.
T Consensus 193 g--i~i~~eal~~Ia~~s---~GdlR~aln~Le~ 221 (472)
T PRK14962 193 G--IEIDREALSFIAKRA---SGGLRDALTMLEQ 221 (472)
T ss_pred C--CCCCHHHHHHHHHHh---CCCHHHHHHHHHH
Confidence 4 689999999999863 2345666555554
No 181
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=2.8e-14 Score=168.84 Aligned_cols=200 Identities=17% Similarity=0.268 Sum_probs=133.2
Q ss_pred hcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCC----CceEEEeccccccccc
Q 002012 662 HKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTE----NALVRIDMSEYMEKHS 737 (982)
Q Consensus 662 ~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~----~~~v~i~~s~~~~~~~ 737 (982)
+.+|+||+++++.+.+++...+ ....+||+||+|+|||++|+.+|+.+++.. .++-.++.....+...
T Consensus 15 f~divGq~~v~~~L~~~i~~~~--------~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~ 86 (527)
T PRK14969 15 FSELVGQEHVVRALTNALEQQR--------LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGR 86 (527)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC--------CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCC
Confidence 4789999999999999887432 122379999999999999999999996532 1221111000001111
Q ss_pred cccccCCC-CCccccccCCchhHHHhhC----CCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEEe
Q 002012 738 VSRLVGAP-PGYVGYEEGGQLTEVVRRR----PYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMT 812 (982)
Q Consensus 738 ~~~l~g~~-~g~vg~~~~~~l~~~l~~~----~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~t 812 (982)
+..++... .+..+.+..+.+.+.+... .+.|+||||+|+++.+.+|.|++.||+- ..+++||++
T Consensus 87 ~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEep-----------p~~~~fIL~ 155 (527)
T PRK14969 87 FVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEP-----------PEHVKFILA 155 (527)
T ss_pred CCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCC-----------CCCEEEEEE
Confidence 11111111 1122222223344444333 3579999999999999999999999972 135788888
Q ss_pred cCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHHHHHHHHHhCCC
Q 002012 813 SNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKI 892 (982)
Q Consensus 813 sn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~~~~~~~~~~ 892 (982)
|+.... +.+.+++|| ..+.|.+++.+++.+.+...+++ .+
T Consensus 156 t~d~~k-------------------------------il~tI~SRc-~~~~f~~l~~~~i~~~L~~il~~-------eg- 195 (527)
T PRK14969 156 TTDPQK-------------------------------IPVTVLSRC-LQFNLKQMPPPLIVSHLQHILEQ-------EN- 195 (527)
T ss_pred eCChhh-------------------------------CchhHHHHH-HHHhcCCCCHHHHHHHHHHHHHH-------cC-
Confidence 764322 566799999 79999999999999888877764 44
Q ss_pred CccCCHHHHHHHHhcCCCCCCCchHHHHHHHH
Q 002012 893 DLHYTKEAVTLLGILGFDPNFGARPVKRVIQQ 924 (982)
Q Consensus 893 ~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~ 924 (982)
+.+++++++.|+..+ . .+.|...+.+++
T Consensus 196 -i~~~~~al~~la~~s-~--Gslr~al~lldq 223 (527)
T PRK14969 196 -IPFDATALQLLARAA-A--GSMRDALSLLDQ 223 (527)
T ss_pred -CCCCHHHHHHHHHHc-C--CCHHHHHHHHHH
Confidence 678999999998863 2 224555555554
No 182
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.56 E-value=3.4e-14 Score=169.48 Aligned_cols=201 Identities=22% Similarity=0.369 Sum_probs=135.9
Q ss_pred hhcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccc-cccc
Q 002012 661 LHKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEK-HSVS 739 (982)
Q Consensus 661 l~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~-~~~~ 739 (982)
.+.+|+||+.+++.+..++...+ ....+||+||+|+|||++|+++|+.+++.+.....--|..+... ....
T Consensus 16 ~f~dIiGQe~~v~~L~~aI~~~r--------l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~ 87 (725)
T PRK07133 16 TFDDIVGQDHIVQTLKNIIKSNK--------ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSL 87 (725)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC--------CCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCC
Confidence 35789999999999999987432 22238999999999999999999999664321100112211100 0000
Q ss_pred c-ccCCCCCccccccCCchhHHHhhC----CCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEEecC
Q 002012 740 R-LVGAPPGYVGYEEGGQLTEVVRRR----PYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSN 814 (982)
Q Consensus 740 ~-l~g~~~g~vg~~~~~~l~~~l~~~----~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn 814 (982)
. +.+...+..|.++.+.+.+.+... ++.|++|||+|.|....+++|++.||+- ..+++||++|+
T Consensus 88 Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEP-----------P~~tifILaTt 156 (725)
T PRK07133 88 DIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEP-----------PKHVIFILATT 156 (725)
T ss_pred cEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcC-----------CCceEEEEEcC
Confidence 1 111122233434344555555543 4579999999999999999999999972 13578888876
Q ss_pred CChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHHHHHHHHHhCCCCc
Q 002012 815 IGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDL 894 (982)
Q Consensus 815 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~~~~~~~~~~~l 894 (982)
... .+.+++.+|| ..+.|.|++.+++.+.+...+.+ .+ +
T Consensus 157 e~~-------------------------------KLl~TI~SRc-q~ieF~~L~~eeI~~~L~~il~k-------eg--I 195 (725)
T PRK07133 157 EVH-------------------------------KIPLTILSRV-QRFNFRRISEDEIVSRLEFILEK-------EN--I 195 (725)
T ss_pred Chh-------------------------------hhhHHHHhhc-eeEEccCCCHHHHHHHHHHHHHH-------cC--C
Confidence 322 1667899999 69999999999999998877765 34 6
Q ss_pred cCCHHHHHHHHhcCCCCCCCchHHHHHHHH
Q 002012 895 HYTKEAVTLLGILGFDPNFGARPVKRVIQQ 924 (982)
Q Consensus 895 ~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~ 924 (982)
.+++++++.|+..+- .+.|...+.+++
T Consensus 196 ~id~eAl~~LA~lS~---GslR~AlslLek 222 (725)
T PRK07133 196 SYEKNALKLIAKLSS---GSLRDALSIAEQ 222 (725)
T ss_pred CCCHHHHHHHHHHcC---CCHHHHHHHHHH
Confidence 788999988887632 224555555554
No 183
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=5.9e-14 Score=165.26 Aligned_cols=199 Identities=21% Similarity=0.338 Sum_probs=131.6
Q ss_pred hhcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCC----CceEEEe-ccccccc
Q 002012 661 LHKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTE----NALVRID-MSEYMEK 735 (982)
Q Consensus 661 l~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~----~~~v~i~-~s~~~~~ 735 (982)
-+++|+||+.+++.|.+++...+. ..++||+||+|||||++|+.+|+.+++.. .+|-.+. |..+...
T Consensus 14 sf~dIiGQe~v~~~L~~ai~~~ri--------~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g 85 (624)
T PRK14959 14 TFAEVAGQETVKAILSRAAQENRV--------APAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQG 85 (624)
T ss_pred CHHHhcCCHHHHHHHHHHHHcCCC--------CceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcC
Confidence 347889999999999988874321 23599999999999999999999996531 1221110 1011000
Q ss_pred -c-ccccccCCCCCccccccCCchhHHHhh----CCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEE
Q 002012 736 -H-SVSRLVGAPPGYVGYEEGGQLTEVVRR----RPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVV 809 (982)
Q Consensus 736 -~-~~~~l~g~~~g~vg~~~~~~l~~~l~~----~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~ii 809 (982)
+ ++..+-+. ...+.+..+.+.+.+.. ..+.||||||+|.++...++.|++.||+- ..+++|
T Consensus 86 ~hpDv~eId~a--~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP-----------~~~~if 152 (624)
T PRK14959 86 MHVDVVEIDGA--SNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEP-----------PARVTF 152 (624)
T ss_pred CCCceEEEecc--cccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhcc-----------CCCEEE
Confidence 0 01111111 11222222334444432 34679999999999999999999999972 135888
Q ss_pred EEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHHHHHHHHHh
Q 002012 810 IMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQ 889 (982)
Q Consensus 810 I~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~~~~~~~ 889 (982)
|++||.... +.+.+.+|| .++.|.|++.+++.+++...+..
T Consensus 153 ILaTt~~~k-------------------------------ll~TI~SRc-q~i~F~pLs~~eL~~~L~~il~~------- 193 (624)
T PRK14959 153 VLATTEPHK-------------------------------FPVTIVSRC-QHFTFTRLSEAGLEAHLTKVLGR------- 193 (624)
T ss_pred EEecCChhh-------------------------------hhHHHHhhh-hccccCCCCHHHHHHHHHHHHHH-------
Confidence 888875332 456788999 68899999999999988876654
Q ss_pred CCCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHH
Q 002012 890 KKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQ 924 (982)
Q Consensus 890 ~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~ 924 (982)
.+ +.+++++++.|+..+. -..|..-+.+++
T Consensus 194 eg--i~id~eal~lIA~~s~---GdlR~Al~lLeq 223 (624)
T PRK14959 194 EG--VDYDPAAVRLIARRAA---GSVRDSMSLLGQ 223 (624)
T ss_pred cC--CCCCHHHHHHHHHHcC---CCHHHHHHHHHH
Confidence 34 6799999999998632 224554454443
No 184
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.55 E-value=1.3e-13 Score=166.16 Aligned_cols=212 Identities=21% Similarity=0.265 Sum_probs=146.3
Q ss_pred hhhhHHHhhcCCCCCcccchHHHHHHHHHhccCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEeccc
Q 002012 256 GNDLTELARSGKLDPVIGRDDEIRRCIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMAS 335 (982)
Q Consensus 256 ~~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~ 335 (982)
..++.+.+||..|++++|++..+++++..+......+++|+|||||||||+|+.+++........+.-.+.+++.+++..
T Consensus 141 ~~~~~~~~rp~~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~ 220 (615)
T TIGR02903 141 HKSAQSLLRPRAFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTT 220 (615)
T ss_pred hhHHhhhcCcCcHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechh
Confidence 46677888999999999999999999888876677789999999999999999998776322211111256788888765
Q ss_pred ccccc-----cccccHHH----HHHHHHH----------HHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcC
Q 002012 336 LVAGT-----CYRGDFEK----RLKAVLK----------EVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGR 396 (982)
Q Consensus 336 l~~~~-----~~~g~~e~----~l~~l~~----------~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~ 396 (982)
+.... ...|.... ..+..+. .+...+ +.+|||||++.|. ...++.|+.+++.
T Consensus 221 l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~as-gGvL~LDEi~~Ld--------~~~Q~~Ll~~Le~ 291 (615)
T TIGR02903 221 LRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAH-GGVLFIDEIGELD--------PLLQNKLLKVLED 291 (615)
T ss_pred ccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcC-CCeEEEeccccCC--------HHHHHHHHHHHhh
Confidence 42100 01111100 0111111 011112 3499999999885 4555666666654
Q ss_pred C------------------------------CeEEEEecCchhHhhhhhcChHHHhccceEEecCCCHHHHHHHHHHHHH
Q 002012 397 G------------------------------ELRCIGATTLNEYRNYIEKDPALERRFQQVFCDQPSVENTISILRGLRE 446 (982)
Q Consensus 397 g------------------------------~i~vI~at~~~~~~~~~~~d~al~rRf~~i~i~~Ps~~e~~~IL~~~~~ 446 (982)
+ .+++|++|+.... .++++|++||..+.+.+++.+++..|++..+.
T Consensus 292 ~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~----~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~ 367 (615)
T TIGR02903 292 KRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPE----EINPALRSRCAEVFFEPLTPEDIALIVLNAAE 367 (615)
T ss_pred CeEEeecceeccCCcccchhhhhhcccCccceEEEEEecccccc----ccCHHHHhceeEEEeCCCCHHHHHHHHHHHHH
Confidence 3 3677777777553 57999999999999999999999999998777
Q ss_pred HHhhhcCCccChHHHHHHHHHhhhhhccCCCcchhhHHHHHHHHH
Q 002012 447 RYELHHGVKISDSALVSAAVLADRYITERFLPDKAIDLVDEAAAK 491 (982)
Q Consensus 447 ~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~p~~a~~lld~a~~~ 491 (982)
+ .++.++++++..+..++.. .+++++.+..+...
T Consensus 368 ~----~~v~ls~eal~~L~~ys~~-------gRraln~L~~~~~~ 401 (615)
T TIGR02903 368 K----INVHLAAGVEELIARYTIE-------GRKAVNILADVYGY 401 (615)
T ss_pred H----cCCCCCHHHHHHHHHCCCc-------HHHHHHHHHHHHHH
Confidence 6 4677899999988887541 15666776666544
No 185
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.55 E-value=4e-14 Score=162.29 Aligned_cols=209 Identities=23% Similarity=0.291 Sum_probs=139.3
Q ss_pred hhhcccccchHHHHHHHHHHHHHhcCC----CCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccc
Q 002012 660 VLHKRVIGQDIAVKSVADAIRRSRAGL----SDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEK 735 (982)
Q Consensus 660 ~l~~~iiGq~~a~~~l~~~i~~~~~g~----~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~ 735 (982)
..+.+|.|.+..++.|.+.+....... ...-.+..++||+||||||||++|+++|+.+ +.+|+.++++++...
T Consensus 128 ~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~---~~~~i~v~~~~l~~~ 204 (389)
T PRK03992 128 VTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET---NATFIRVVGSELVQK 204 (389)
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh---CCCEEEeehHHHhHh
Confidence 345678999999999998885421110 0001222359999999999999999999987 678999988876422
Q ss_pred cccccccCCCCCccccccCCchhHHHhhCCCeEEEEcccccc-----------CHHHHHHHHHhhhcCceecCCCcEEec
Q 002012 736 HSVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEIEKA-----------HQDVFNILLQLLDDGRITDSQGRTVSF 804 (982)
Q Consensus 736 ~~~~~l~g~~~g~vg~~~~~~l~~~l~~~~~~Vl~lDEidkl-----------~~~~~~~Ll~~le~g~~~d~~g~~~~~ 804 (982)
++|.... ..+.+++..+...++||||||+|.+ ++.++..|++++..-.-.. ..
T Consensus 205 -----~~g~~~~-----~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~------~~ 268 (389)
T PRK03992 205 -----FIGEGAR-----LVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFD------PR 268 (389)
T ss_pred -----hccchHH-----HHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccC------CC
Confidence 2222111 1123555666667799999999997 3567777777765311000 12
Q ss_pred ccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHH--hccccccccCCCChhHHHHHHHHHHHH
Q 002012 805 TNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFL--NRIDEYIVFQPLDSKEISKIVEIQMNR 882 (982)
Q Consensus 805 ~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll--~Rid~ii~F~pl~~~~l~~il~~~l~~ 882 (982)
.+++||+|||.... ++++++ +|||..|.|++++.++..+|++..+..
T Consensus 269 ~~v~VI~aTn~~~~-------------------------------ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~ 317 (389)
T PRK03992 269 GNVKIIAATNRIDI-------------------------------LDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRK 317 (389)
T ss_pred CCEEEEEecCChhh-------------------------------CCHHHcCCccCceEEEECCCCHHHHHHHHHHHhcc
Confidence 46889999997532 566776 499999999999999999999876543
Q ss_pred HHHHHHhCCCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHH
Q 002012 883 VKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEI 930 (982)
Q Consensus 883 ~~~~~~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~l~~~l 930 (982)
..+.-.++ ++.|+.. ...|..++|+.++......++
T Consensus 318 -------~~~~~~~~---~~~la~~--t~g~sgadl~~l~~eA~~~a~ 353 (389)
T PRK03992 318 -------MNLADDVD---LEELAEL--TEGASGADLKAICTEAGMFAI 353 (389)
T ss_pred -------CCCCCcCC---HHHHHHH--cCCCCHHHHHHHHHHHHHHHH
Confidence 12111222 3445553 245667889988887555443
No 186
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=3.5e-14 Score=169.96 Aligned_cols=201 Identities=21% Similarity=0.282 Sum_probs=135.9
Q ss_pred hhcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCC----ceEEE-eccccccc
Q 002012 661 LHKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTEN----ALVRI-DMSEYMEK 735 (982)
Q Consensus 661 l~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~----~~v~i-~~s~~~~~ 735 (982)
.+.+|+||+++++.|.+++... +....+||+||+|+|||++|+++++.+++... ++-.+ .|.++...
T Consensus 14 ~f~~iiGq~~v~~~L~~~i~~~--------~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g 85 (576)
T PRK14965 14 TFSDLTGQEHVSRTLQNAIDTG--------RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEG 85 (576)
T ss_pred CHHHccCcHHHHHHHHHHHHcC--------CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcC
Confidence 3578999999999999988742 22224899999999999999999999965321 22111 11111111
Q ss_pred cccccccCCCCCccccccCCchhHHHhhC----CCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEE
Q 002012 736 HSVSRLVGAPPGYVGYEEGGQLTEVVRRR----PYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIM 811 (982)
Q Consensus 736 ~~~~~l~g~~~g~vg~~~~~~l~~~l~~~----~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~ 811 (982)
.....+.-...+..|.++.+.+.+.+... .+.|+||||+|+++...+|+|++.||+- ..+++||+
T Consensus 86 ~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEep-----------p~~~~fIl 154 (576)
T PRK14965 86 RSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEP-----------PPHVKFIF 154 (576)
T ss_pred CCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcC-----------CCCeEEEE
Confidence 00000000111123333334455555433 4679999999999999999999999972 24688998
Q ss_pred ecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHHHHHHHHHhCC
Q 002012 812 TSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKK 891 (982)
Q Consensus 812 tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~~~~~~~~~ 891 (982)
+|+.... +.+.+.+|| ..+.|.+++.+++...+...+++ .+
T Consensus 155 ~t~~~~k-------------------------------l~~tI~SRc-~~~~f~~l~~~~i~~~L~~i~~~-------eg 195 (576)
T PRK14965 155 ATTEPHK-------------------------------VPITILSRC-QRFDFRRIPLQKIVDRLRYIADQ-------EG 195 (576)
T ss_pred EeCChhh-------------------------------hhHHHHHhh-hhhhcCCCCHHHHHHHHHHHHHH-------hC
Confidence 8874321 566899999 69999999999998888777765 34
Q ss_pred CCccCCHHHHHHHHhcCCCCCCCchHHHHHHHH
Q 002012 892 IDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQ 924 (982)
Q Consensus 892 ~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~ 924 (982)
+.+++++++.|+..+- .+.|...+.+++
T Consensus 196 --i~i~~~al~~la~~a~---G~lr~al~~Ldq 223 (576)
T PRK14965 196 --ISISDAALALVARKGD---GSMRDSLSTLDQ 223 (576)
T ss_pred --CCCCHHHHHHHHHHcC---CCHHHHHHHHHH
Confidence 6789999999988632 234555555554
No 187
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.55 E-value=1.7e-13 Score=146.40 Aligned_cols=179 Identities=15% Similarity=0.152 Sum_probs=124.5
Q ss_pred CCCCcc-cch-HHHHHHHHHhccCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccccccccc
Q 002012 267 KLDPVI-GRD-DEIRRCIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGTCYRG 344 (982)
Q Consensus 267 ~l~~li-G~~-~~i~~l~~~L~~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~~~~g 344 (982)
+|++.+ |.. ..+..+.++......++++|+||||||||++++++++.+... +..+.++++.....
T Consensus 20 ~fd~f~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~-------~~~v~y~~~~~~~~------ 86 (235)
T PRK08084 20 TFASFYPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQR-------GRAVGYVPLDKRAW------ 86 (235)
T ss_pred CccccccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhC-------CCeEEEEEHHHHhh------
Confidence 455554 533 344444444334455789999999999999999999987532 56677776544221
Q ss_pred cHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCCCeEEEEecCchhHhhhhhcChHHHhcc
Q 002012 345 DFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRGELRCIGATTLNEYRNYIEKDPALERRF 424 (982)
Q Consensus 345 ~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g~i~vI~at~~~~~~~~~~~d~al~rRf 424 (982)
...++++.+... -+|+|||+|.+.+.. .....+.+++....++|+..+|+|++.++ ..+-...|.|++||
T Consensus 87 ----~~~~~~~~~~~~---dlliiDdi~~~~~~~--~~~~~lf~l~n~~~e~g~~~li~ts~~~p-~~l~~~~~~L~SRl 156 (235)
T PRK08084 87 ----FVPEVLEGMEQL---SLVCIDNIECIAGDE--LWEMAIFDLYNRILESGRTRLLITGDRPP-RQLNLGLPDLASRL 156 (235)
T ss_pred ----hhHHHHHHhhhC---CEEEEeChhhhcCCH--HHHHHHHHHHHHHHHcCCCeEEEeCCCCh-HHcCcccHHHHHHH
Confidence 112333333332 289999999985322 22345667788888888888888887554 33334689999999
Q ss_pred ---ceEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhh
Q 002012 425 ---QQVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYI 472 (982)
Q Consensus 425 ---~~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i 472 (982)
..+.+.+|+.+++.++++..... .++.++++++++++..+.+-+
T Consensus 157 ~~g~~~~l~~~~~~~~~~~l~~~a~~----~~~~l~~~v~~~L~~~~~~d~ 203 (235)
T PRK08084 157 DWGQIYKLQPLSDEEKLQALQLRARL----RGFELPEDVGRFLLKRLDREM 203 (235)
T ss_pred hCCceeeecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHhhcCCH
Confidence 59999999999999999765554 479999999999999877543
No 188
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.55 E-value=1.8e-13 Score=152.79 Aligned_cols=194 Identities=16% Similarity=0.261 Sum_probs=132.9
Q ss_pred hcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccccccc
Q 002012 662 HKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRL 741 (982)
Q Consensus 662 ~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l 741 (982)
+.+++||++.++.|...+...... ..+..+++|+||||||||++|+++|+.+ +..+..++++....
T Consensus 3 ~~~~iG~~~~~~~l~~~l~~~~~~----~~~~~~~ll~Gp~G~GKT~la~~ia~~~---~~~~~~~~~~~~~~------- 68 (305)
T TIGR00635 3 LAEFIGQEKVKEQLQLFIEAAKMR----QEALDHLLLYGPPGLGKTTLAHIIANEM---GVNLKITSGPALEK------- 68 (305)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhc----CCCCCeEEEECCCCCCHHHHHHHHHHHh---CCCEEEeccchhcC-------
Confidence 467999999999998888654322 2233469999999999999999999987 33343333221110
Q ss_pred cCCCCCccccccCCchhHHHhh-CCCeEEEEccccccCHHHHHHHHHhhhcCceec--CCC-----cEEecccEEEEEec
Q 002012 742 VGAPPGYVGYEEGGQLTEVVRR-RPYSVVLFDEIEKAHQDVFNILLQLLDDGRITD--SQG-----RTVSFTNCVVIMTS 813 (982)
Q Consensus 742 ~g~~~g~vg~~~~~~l~~~l~~-~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d--~~g-----~~~~~~~~iiI~ts 813 (982)
.+.+.+.+.. ....|||||||+.+++..++.|+.+|++....- ..+ -......+++|.+|
T Consensus 69 ------------~~~l~~~l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t 136 (305)
T TIGR00635 69 ------------PGDLAAILTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGAT 136 (305)
T ss_pred ------------chhHHHHHHhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEec
Confidence 0113333332 235699999999999999999999998765321 111 11233457777777
Q ss_pred CCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHHHHHHHHHhCCCC
Q 002012 814 NIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKID 893 (982)
Q Consensus 814 n~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~~~~~~~~~~~ 893 (982)
|.... +.+++.+||..++.|.|++.+++.+++...+.. . .
T Consensus 137 ~~~~~-------------------------------l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~-------~--~ 176 (305)
T TIGR00635 137 TRAGM-------------------------------LTSPLRDRFGIILRLEFYTVEELAEIVSRSAGL-------L--N 176 (305)
T ss_pred CCccc-------------------------------cCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHH-------h--C
Confidence 75432 677899999878899999999999999876653 2 3
Q ss_pred ccCCHHHHHHHHhcCCCCCCCchHHHHHHHH
Q 002012 894 LHYTKEAVTLLGILGFDPNFGARPVKRVIQQ 924 (982)
Q Consensus 894 l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~ 924 (982)
+.++++++++|++.+. +. .|.+.++++.
T Consensus 177 ~~~~~~al~~ia~~~~-G~--pR~~~~ll~~ 204 (305)
T TIGR00635 177 VEIEPEAALEIARRSR-GT--PRIANRLLRR 204 (305)
T ss_pred CCcCHHHHHHHHHHhC-CC--cchHHHHHHH
Confidence 6799999999998632 11 2444455544
No 189
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.55 E-value=1.1e-13 Score=160.32 Aligned_cols=182 Identities=19% Similarity=0.349 Sum_probs=131.1
Q ss_pred cccccchHHHHH---HHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccccc
Q 002012 663 KRVIGQDIAVKS---VADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVS 739 (982)
Q Consensus 663 ~~iiGq~~a~~~---l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~ 739 (982)
++++||++++.. +...+.. ....+++|+||||||||++|+.+++.+ +..++.+++.....
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~---------~~~~~ilL~GppGtGKTtLA~~ia~~~---~~~~~~l~a~~~~~----- 74 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEA---------GRLSSMILWGPPGTGKTTLARIIAGAT---DAPFEALSAVTSGV----- 74 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHc---------CCCceEEEECCCCCCHHHHHHHHHHHh---CCCEEEEecccccH-----
Confidence 578999998766 6666642 122369999999999999999999987 56777777653210
Q ss_pred cccCCCCCccccccCCchhHHHh----hCCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEEecCC
Q 002012 740 RLVGAPPGYVGYEEGGQLTEVVR----RRPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNI 815 (982)
Q Consensus 740 ~l~g~~~g~vg~~~~~~l~~~l~----~~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~ 815 (982)
...+.+.+.+. .....||||||+|.++...++.|+..+++|. +++|.+++.
T Consensus 75 ------------~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~~~-------------iilI~att~ 129 (413)
T PRK13342 75 ------------KDLREVIEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVEDGT-------------ITLIGATTE 129 (413)
T ss_pred ------------HHHHHHHHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhcCc-------------EEEEEeCCC
Confidence 00011222221 2256799999999999999999999999743 556666543
Q ss_pred ChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHHHHHHHHHhCCCCcc
Q 002012 816 GSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLH 895 (982)
Q Consensus 816 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~~~~~~~~~~~l~ 895 (982)
... ..+.+++++|| .++.|.|++.+++..++...+.... .++ +.
T Consensus 130 n~~-----------------------------~~l~~aL~SR~-~~~~~~~ls~e~i~~lL~~~l~~~~-----~~~-i~ 173 (413)
T PRK13342 130 NPS-----------------------------FEVNPALLSRA-QVFELKPLSEEDIEQLLKRALEDKE-----RGL-VE 173 (413)
T ss_pred Chh-----------------------------hhccHHHhccc-eeeEeCCCCHHHHHHHHHHHHHHhh-----cCC-CC
Confidence 221 11678999999 7899999999999999988776531 232 47
Q ss_pred CCHHHHHHHHhcCCCCCCCchHHHHHHHHH
Q 002012 896 YTKEAVTLLGILGFDPNFGARPVKRVIQQL 925 (982)
Q Consensus 896 i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~ 925 (982)
+++++++.|+..+ . ...|.+.+.++..
T Consensus 174 i~~~al~~l~~~s-~--Gd~R~aln~Le~~ 200 (413)
T PRK13342 174 LDDEALDALARLA-N--GDARRALNLLELA 200 (413)
T ss_pred CCHHHHHHHHHhC-C--CCHHHHHHHHHHH
Confidence 8999999999874 3 3457887887775
No 190
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.55 E-value=7.8e-14 Score=166.17 Aligned_cols=199 Identities=20% Similarity=0.371 Sum_probs=135.9
Q ss_pred hhcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCC----CceEEEe-ccccccc
Q 002012 661 LHKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTE----NALVRID-MSEYMEK 735 (982)
Q Consensus 661 l~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~----~~~v~i~-~s~~~~~ 735 (982)
.+.+++||+++++.+.+++...+ ....+||+||+|||||++|+.+|+.+.+.+ .++-.+. |..+..
T Consensus 14 ~f~~viGq~~v~~~L~~~i~~~~--------~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~- 84 (559)
T PRK05563 14 TFEDVVGQEHITKTLKNAIKQGK--------ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITN- 84 (559)
T ss_pred cHHhccCcHHHHHHHHHHHHcCC--------CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhc-
Confidence 35789999999999999987432 222489999999999999999999986432 1221111 111111
Q ss_pred cccccc--cCCCCCccccccCCchhHHHhh----CCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEE
Q 002012 736 HSVSRL--VGAPPGYVGYEEGGQLTEVVRR----RPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVV 809 (982)
Q Consensus 736 ~~~~~l--~g~~~g~vg~~~~~~l~~~l~~----~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~ii 809 (982)
.....+ +. .....|.++.+.+.+.+.. +.+.|+||||+|++....+++|++.||+- ..+++|
T Consensus 85 g~~~dv~eid-aas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEep-----------p~~~if 152 (559)
T PRK05563 85 GSLMDVIEID-AASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEP-----------PAHVIF 152 (559)
T ss_pred CCCCCeEEee-ccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCC-----------CCCeEE
Confidence 001110 11 1112333333445555553 34679999999999999999999999962 246888
Q ss_pred EEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHHHHHHHHHh
Q 002012 810 IMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQ 889 (982)
Q Consensus 810 I~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~~~~~~~ 889 (982)
|++|+... .+.+++.+|| ..+.|.|++.+++...+...+++
T Consensus 153 Ilatt~~~-------------------------------ki~~tI~SRc-~~~~f~~~~~~ei~~~L~~i~~~------- 193 (559)
T PRK05563 153 ILATTEPH-------------------------------KIPATILSRC-QRFDFKRISVEDIVERLKYILDK------- 193 (559)
T ss_pred EEEeCChh-------------------------------hCcHHHHhHh-eEEecCCCCHHHHHHHHHHHHHH-------
Confidence 88876432 1677899999 58999999999999988877764
Q ss_pred CCCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHH
Q 002012 890 KKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQ 924 (982)
Q Consensus 890 ~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~ 924 (982)
.| +.+++++++.|+..+ . .+.|...+.+++
T Consensus 194 eg--i~i~~~al~~ia~~s-~--G~~R~al~~Ldq 223 (559)
T PRK05563 194 EG--IEYEDEALRLIARAA-E--GGMRDALSILDQ 223 (559)
T ss_pred cC--CCCCHHHHHHHHHHc-C--CCHHHHHHHHHH
Confidence 44 678999999988853 1 245666666654
No 191
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.54 E-value=3.7e-14 Score=161.21 Aligned_cols=171 Identities=18% Similarity=0.323 Sum_probs=114.6
Q ss_pred hcccccchHHHHHHHHHHHHHhcCCCCCCC-CCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccc-----cc
Q 002012 662 HKRVIGQDIAVKSVADAIRRSRAGLSDPAR-PIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYM-----EK 735 (982)
Q Consensus 662 ~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~-p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~-----~~ 735 (982)
+++|+||+.+++.+.+++...+.+...... ....+||+||+|+|||++|+.+|+.+++.... .-.|..+. ..
T Consensus 4 f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~--~~~Cg~C~~C~~~~~ 81 (394)
T PRK07940 4 WDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPD--EPGCGECRACRTVLA 81 (394)
T ss_pred hhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCC--CCCCCCCHHHHHHhc
Confidence 578999999999999999865533222222 22359999999999999999999998664311 01122110 00
Q ss_pred ccccc--ccCCCCCccccccCCchhHHHhhC----CCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEE
Q 002012 736 HSVSR--LVGAPPGYVGYEEGGQLTEVVRRR----PYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVV 809 (982)
Q Consensus 736 ~~~~~--l~g~~~g~vg~~~~~~l~~~l~~~----~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~ii 809 (982)
..+.. ++......++.++.+.+.+.+... ++.|+||||+|.|++..+|.|++.||+.. .+++|
T Consensus 82 ~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~-----------~~~~f 150 (394)
T PRK07940 82 GTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPP-----------PRTVW 150 (394)
T ss_pred CCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCC-----------CCCeE
Confidence 11111 111111123333334455555443 35799999999999999999999999721 34667
Q ss_pred EEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHH
Q 002012 810 IMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVE 877 (982)
Q Consensus 810 I~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~ 877 (982)
|++|+.... +.|++++|| ..+.|+|++.+++.+.+.
T Consensus 151 IL~a~~~~~-------------------------------llpTIrSRc-~~i~f~~~~~~~i~~~L~ 186 (394)
T PRK07940 151 LLCAPSPED-------------------------------VLPTIRSRC-RHVALRTPSVEAVAEVLV 186 (394)
T ss_pred EEEECChHH-------------------------------ChHHHHhhC-eEEECCCCCHHHHHHHHH
Confidence 776665322 678999999 799999999999887776
No 192
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.54 E-value=2.7e-13 Score=147.37 Aligned_cols=150 Identities=25% Similarity=0.323 Sum_probs=107.8
Q ss_pred eEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccccccccCCCCCcccc--------------------ccC
Q 002012 695 SFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRLVGAPPGYVGY--------------------EEG 754 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l~g~~~g~vg~--------------------~~~ 754 (982)
++||.||||||||++|+.+|+.+ +.+++.++|.+-.. .+.++|...++... ...
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~l---g~~~~~i~~~~~~~---~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARKR---DRPVMLINGDAELT---TSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVD 96 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh---CCCEEEEeCCccCC---HHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecC
Confidence 39999999999999999999977 78999999986322 23455543322110 012
Q ss_pred CchhHHHhhCCCeEEEEccccccCHHHHHHHHHhhhcCceecCCC----cEE-ecccEEEEEecCCChHHHHHhhhhccc
Q 002012 755 GQLTEVVRRRPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQG----RTV-SFTNCVVIMTSNIGSHYILETLQSVQD 829 (982)
Q Consensus 755 ~~l~~~l~~~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g----~~~-~~~~~iiI~tsn~~~~~i~~~~~~~~~ 829 (982)
+.+..++.. +++|+||||+++++++++.|+.+|++|.++.+++ ..+ ...++++|+|+|.......
T Consensus 97 g~l~~A~~~--g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~-------- 166 (262)
T TIGR02640 97 NRLTLAVRE--GFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGV-------- 166 (262)
T ss_pred chHHHHHHc--CCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccce--------
Confidence 345544443 4599999999999999999999999998876542 222 2257889999997532110
Q ss_pred chHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHH
Q 002012 830 SKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQ 879 (982)
Q Consensus 830 ~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~ 879 (982)
..++++|++|| ..+.+..++.++..+|+...
T Consensus 167 ------------------~~l~~aL~~R~-~~i~i~~P~~~~e~~Il~~~ 197 (262)
T TIGR02640 167 ------------------HETQDALLDRL-ITIFMDYPDIDTETAILRAK 197 (262)
T ss_pred ------------------ecccHHHHhhc-EEEECCCCCHHHHHHHHHHh
Confidence 11567899999 57788888888888888764
No 193
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.54 E-value=1.4e-14 Score=147.60 Aligned_cols=185 Identities=22% Similarity=0.306 Sum_probs=84.9
Q ss_pred hcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEecccccccccccc-
Q 002012 662 HKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSR- 740 (982)
Q Consensus 662 ~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~- 740 (982)
+.+|+||+.+++.+.-+.. |. .++||+||||||||++|+.+...|..- ..-.+-+...-+++..
T Consensus 2 f~dI~GQe~aKrAL~iAAa----G~-------h~lLl~GppGtGKTmlA~~l~~lLP~l----~~~e~le~~~i~s~~~~ 66 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAA----GG-------HHLLLIGPPGTGKTMLARRLPSLLPPL----TEEEALEVSKIYSVAGL 66 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHH----CC---------EEEES-CCCTHHHHHHHHHHCS--C----CEECCESS--S-TT---
T ss_pred hhhhcCcHHHHHHHHHHHc----CC-------CCeEEECCCCCCHHHHHHHHHHhCCCC----chHHHhhhccccccccC
Confidence 4789999999988866554 32 269999999999999999999988221 1111111111111100
Q ss_pred -----ccCCCC-----C------ccccccCCchhHHHhhCCCeEEEEccccccCHHHHHHHHHhhhcCceecCC-CcEEe
Q 002012 741 -----LVGAPP-----G------YVGYEEGGQLTEVVRRRPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQ-GRTVS 803 (982)
Q Consensus 741 -----l~g~~~-----g------~vg~~~~~~l~~~l~~~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~-g~~~~ 803 (982)
++..+| . -+|-.. ....+.+..++++|||+||+-.+++.+++.|++.||+|.++... |..+.
T Consensus 67 ~~~~~~~~~~Pfr~phhs~s~~~liGgg~-~~~PGeislAh~GVLflDE~~ef~~~vld~Lr~ple~g~v~i~R~~~~~~ 145 (206)
T PF01078_consen 67 GPDEGLIRQRPFRAPHHSASEAALIGGGR-PPRPGEISLAHRGVLFLDELNEFDRSVLDALRQPLEDGEVTISRAGGSVT 145 (206)
T ss_dssp S---EEEE---EEEE-TT--HHHHHEEGG-GEEE-CGGGGTTSEEEECETTTS-HHHHHHHHHHHHHSBEEEEETTEEEE
T ss_pred CCCCceecCCCcccCCCCcCHHHHhCCCc-CCCcCHHHHhcCCEEEechhhhcCHHHHHHHHHHHHCCeEEEEECCceEE
Confidence 010000 0 011000 11245678889999999999999999999999999999887654 44554
Q ss_pred c-ccEEEEEecCCChHHHHH-hhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhH
Q 002012 804 F-TNCVVIMTSNIGSHYILE-TLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKE 871 (982)
Q Consensus 804 ~-~~~iiI~tsn~~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~ 871 (982)
| .++.+|+|+|+....... ....|.|+......+++ .++-.|++|||..|..++++.++
T Consensus 146 ~Pa~f~lv~a~NPcpCG~~~~~~~~C~Cs~~~~~~Y~~---------rlsgpllDRiDi~v~~~~~~~~~ 206 (206)
T PF01078_consen 146 YPARFLLVAAMNPCPCGYYGDPDNRCRCSPRQIRRYQS---------RLSGPLLDRIDIHVEVPRVSYEE 206 (206)
T ss_dssp EB--EEEEEEE-S---------------------------------------------------------
T ss_pred EecccEEEEEeccccccccccccccccccccccccccc---------cccccccccccccccccccccCC
Confidence 4 899999999976543332 23456666555444443 48889999999999988887653
No 194
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.54 E-value=1.1e-13 Score=167.83 Aligned_cols=191 Identities=17% Similarity=0.298 Sum_probs=132.0
Q ss_pred cccccchHHHH---HHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccccc
Q 002012 663 KRVIGQDIAVK---SVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVS 739 (982)
Q Consensus 663 ~~iiGq~~a~~---~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~ 739 (982)
++++||++.+. .+.+.+.. ....+++|+||||||||++|+++++.+ +..++.+++...... .+.
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~---------~~~~slLL~GPpGtGKTTLA~aIA~~~---~~~f~~lna~~~~i~-dir 94 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKA---------DRVGSLILYGPPGVGKTTLARIIANHT---RAHFSSLNAVLAGVK-DLR 94 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhc---------CCCceEEEECCCCCCHHHHHHHHHHHh---cCcceeehhhhhhhH-HHH
Confidence 56889999884 44444441 223469999999999999999999986 556777766432100 000
Q ss_pred cccCCCCCccccccCCchhHHHhh-CCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCChH
Q 002012 740 RLVGAPPGYVGYEEGGQLTEVVRR-RPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSH 818 (982)
Q Consensus 740 ~l~g~~~g~vg~~~~~~l~~~l~~-~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~ 818 (982)
..+ ......+.. ....||||||||.++...++.|+..+++|. +++|++|+....
T Consensus 95 ~~i------------~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~g~-------------IiLI~aTTenp~ 149 (725)
T PRK13341 95 AEV------------DRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVENGT-------------ITLIGATTENPY 149 (725)
T ss_pred HHH------------HHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhcCce-------------EEEEEecCCChH
Confidence 000 001111111 235699999999999999999999998743 566666554321
Q ss_pred HHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHHHHHHHHHhCCCCccCCH
Q 002012 819 YILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTK 898 (982)
Q Consensus 819 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~~~~~~~~~~~l~i~~ 898 (982)
..+.+++++|+ .++.|+|++.+++..+++..+......+... .+.+++
T Consensus 150 -----------------------------~~l~~aL~SR~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~--~v~I~d 197 (725)
T PRK13341 150 -----------------------------FEVNKALVSRS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDR--KVDLEP 197 (725)
T ss_pred -----------------------------hhhhhHhhccc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCc--ccCCCH
Confidence 01457888998 5899999999999999999887644333222 378999
Q ss_pred HHHHHHHhcCCCCCCCchHHHHHHHHHH
Q 002012 899 EAVTLLGILGFDPNFGARPVKRVIQQLV 926 (982)
Q Consensus 899 ~a~~~L~~~~~~~~~gaR~L~~~i~~~l 926 (982)
+++++|+.++ + .++|.+.++++..+
T Consensus 198 eaL~~La~~s-~--GD~R~lln~Le~a~ 222 (725)
T PRK13341 198 EAEKHLVDVA-N--GDARSLLNALELAV 222 (725)
T ss_pred HHHHHHHHhC-C--CCHHHHHHHHHHHH
Confidence 9999999975 3 35799999888754
No 195
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.54 E-value=6.1e-14 Score=164.27 Aligned_cols=200 Identities=20% Similarity=0.318 Sum_probs=133.7
Q ss_pred hcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCC----ceEEEeccccccccc
Q 002012 662 HKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTEN----ALVRIDMSEYMEKHS 737 (982)
Q Consensus 662 ~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~----~~v~i~~s~~~~~~~ 737 (982)
+.+++||+.+++.+.+++...+ ....+||+||+|+|||++|+++|+.+.+.+. ++-.++.........
T Consensus 15 F~dIIGQe~iv~~L~~aI~~~r--------l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~ 86 (605)
T PRK05896 15 FKQIIGQELIKKILVNAILNNK--------LTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQ 86 (605)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC--------CCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCC
Confidence 4789999999999988886421 1234999999999999999999999965321 111111000000011
Q ss_pred cccccC-CCCCccccccCCchhHHHhhC----CCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEEe
Q 002012 738 VSRLVG-APPGYVGYEEGGQLTEVVRRR----PYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMT 812 (982)
Q Consensus 738 ~~~l~g-~~~g~vg~~~~~~l~~~l~~~----~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~t 812 (982)
...++. ...+..|.++.+.+.+.+... ++.|++|||+|.++.+.+++|++.||+. ..+++||++
T Consensus 87 h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEP-----------p~~tvfIL~ 155 (605)
T PRK05896 87 SVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEP-----------PKHVVFIFA 155 (605)
T ss_pred CCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhC-----------CCcEEEEEE
Confidence 111111 111123333333444444433 4579999999999999999999999972 135888888
Q ss_pred cCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHHHHHHHHHhCCC
Q 002012 813 SNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKI 892 (982)
Q Consensus 813 sn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~~~~~~~~~~ 892 (982)
|+... .+.+++.+|| ..+.|.|++.+++...+...+.+ .+
T Consensus 156 Tt~~~-------------------------------KLl~TI~SRc-q~ieF~~Ls~~eL~~~L~~il~k-------eg- 195 (605)
T PRK05896 156 TTEFQ-------------------------------KIPLTIISRC-QRYNFKKLNNSELQELLKSIAKK-------EK- 195 (605)
T ss_pred CCChH-------------------------------hhhHHHHhhh-hhcccCCCCHHHHHHHHHHHHHH-------cC-
Confidence 76422 1567899999 58999999999999988887764 34
Q ss_pred CccCCHHHHHHHHhcCCCCCCCchHHHHHHHH
Q 002012 893 DLHYTKEAVTLLGILGFDPNFGARPVKRVIQQ 924 (982)
Q Consensus 893 ~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~ 924 (982)
+.+++++++.|+..+- ...|...+.+++
T Consensus 196 -i~Is~eal~~La~lS~---GdlR~AlnlLek 223 (605)
T PRK05896 196 -IKIEDNAIDKIADLAD---GSLRDGLSILDQ 223 (605)
T ss_pred -CCCCHHHHHHHHHHcC---CcHHHHHHHHHH
Confidence 6789999999888632 224555565555
No 196
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.54 E-value=6.9e-14 Score=163.12 Aligned_cols=199 Identities=18% Similarity=0.284 Sum_probs=134.9
Q ss_pred hcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCC--------ceEE-Eecccc
Q 002012 662 HKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTEN--------ALVR-IDMSEY 732 (982)
Q Consensus 662 ~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~--------~~v~-i~~s~~ 732 (982)
+.+++||+.+++.+..++... +...++||+||+|||||++|+++|+.+.+... ++.. -.|..+
T Consensus 20 f~dliGq~~vv~~L~~ai~~~--------ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i 91 (507)
T PRK06645 20 FAELQGQEVLVKVLSYTILND--------RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISF 91 (507)
T ss_pred HHHhcCcHHHHHHHHHHHHcC--------CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHH
Confidence 478999999999998888643 22235999999999999999999999854221 1111 111111
Q ss_pred ccccccccc--cCCCCCccccccCCchhHHHhhC----CCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEeccc
Q 002012 733 MEKHSVSRL--VGAPPGYVGYEEGGQLTEVVRRR----PYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTN 806 (982)
Q Consensus 733 ~~~~~~~~l--~g~~~g~vg~~~~~~l~~~l~~~----~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~ 806 (982)
... .+..+ ++. ....|.++.+.+.+.+... .+.|+||||++.++...++.|++.||+. ..+
T Consensus 92 ~~~-~h~Dv~eida-as~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEep-----------p~~ 158 (507)
T PRK06645 92 NNH-NHPDIIEIDA-ASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEP-----------PPH 158 (507)
T ss_pred hcC-CCCcEEEeec-cCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhc-----------CCC
Confidence 111 01111 111 1122322333344444433 4679999999999999999999999962 246
Q ss_pred EEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHHHHHHH
Q 002012 807 CVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDR 886 (982)
Q Consensus 807 ~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~~~~ 886 (982)
++||++|+.... +.+.+.+|| ..+.|.+++.+++.+++...+++
T Consensus 159 ~vfI~aTte~~k-------------------------------I~~tI~SRc-~~~ef~~ls~~el~~~L~~i~~~---- 202 (507)
T PRK06645 159 IIFIFATTEVQK-------------------------------IPATIISRC-QRYDLRRLSFEEIFKLLEYITKQ---- 202 (507)
T ss_pred EEEEEEeCChHH-------------------------------hhHHHHhcc-eEEEccCCCHHHHHHHHHHHHHH----
Confidence 788887753221 566888999 68999999999999999988875
Q ss_pred HHhCCCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHHH
Q 002012 887 LKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQL 925 (982)
Q Consensus 887 ~~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~ 925 (982)
.+ +.++++++++|+..+ . .+.|.+-+.++++
T Consensus 203 ---eg--i~ie~eAL~~Ia~~s-~--GslR~al~~Ldka 233 (507)
T PRK06645 203 ---EN--LKTDIEALRIIAYKS-E--GSARDAVSILDQA 233 (507)
T ss_pred ---cC--CCCCHHHHHHHHHHc-C--CCHHHHHHHHHHH
Confidence 34 778999999998863 2 2457766666663
No 197
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.53 E-value=1.7e-13 Score=156.27 Aligned_cols=204 Identities=24% Similarity=0.367 Sum_probs=136.5
Q ss_pred hhcccccchHHHHHHHHHHHHHhc--------CCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEecccc
Q 002012 661 LHKRVIGQDIAVKSVADAIRRSRA--------GLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEY 732 (982)
Q Consensus 661 l~~~iiGq~~a~~~l~~~i~~~~~--------g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~ 732 (982)
-+.+|.|.+..++.|.+++..... |+. |..++||+||||||||++|+++|..+ +.+++.+.++++
T Consensus 143 ~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~----~pkgvLL~GppGTGKT~LAkalA~~l---~~~fi~i~~s~l 215 (398)
T PTZ00454 143 TYSDIGGLDIQKQEIREAVELPLTCPELYEQIGID----PPRGVLLYGPPGTGKTMLAKAVAHHT---TATFIRVVGSEF 215 (398)
T ss_pred CHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCC----CCceEEEECCCCCCHHHHHHHHHHhc---CCCEEEEehHHH
Confidence 457899999999999998854321 222 22359999999999999999999987 678888887765
Q ss_pred ccccccccccCCCCCccccccCCchhHHHhhCCCeEEEEccccccC-----------HHHHHHHHHhhhcCceecCCCcE
Q 002012 733 MEKHSVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEIEKAH-----------QDVFNILLQLLDDGRITDSQGRT 801 (982)
Q Consensus 733 ~~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~~~~~Vl~lDEidkl~-----------~~~~~~Ll~~le~g~~~d~~g~~ 801 (982)
.. .++|.... ....++..++...++||||||+|.+. ..++..+.+++..-.-.+
T Consensus 216 ~~-----k~~ge~~~-----~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~----- 280 (398)
T PTZ00454 216 VQ-----KYLGEGPR-----MVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFD----- 280 (398)
T ss_pred HH-----HhcchhHH-----HHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccC-----
Confidence 32 22232111 11235566667778999999999862 345555555554210000
Q ss_pred EecccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHh--ccccccccCCCChhHHHHHHHHH
Q 002012 802 VSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLN--RIDEYIVFQPLDSKEISKIVEIQ 879 (982)
Q Consensus 802 ~~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~--Rid~ii~F~pl~~~~l~~il~~~ 879 (982)
...+++||+|||.... ++|+++. |||..|.|++++.++..+|++..
T Consensus 281 -~~~~v~VI~aTN~~d~-------------------------------LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~ 328 (398)
T PTZ00454 281 -QTTNVKVIMATNRADT-------------------------------LDPALLRPGRLDRKIEFPLPDRRQKRLIFQTI 328 (398)
T ss_pred -CCCCEEEEEecCCchh-------------------------------CCHHHcCCCcccEEEEeCCcCHHHHHHHHHHH
Confidence 1136889999996532 6777774 99999999999999999999877
Q ss_pred HHHHHHHHHhCCCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHH
Q 002012 880 MNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEI 930 (982)
Q Consensus 880 l~~~~~~~~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~l~~~l 930 (982)
+.+ .+....++ ++.|+.. ...|.+++|+.++......++
T Consensus 329 ~~~-------~~l~~dvd---~~~la~~--t~g~sgaDI~~l~~eA~~~A~ 367 (398)
T PTZ00454 329 TSK-------MNLSEEVD---LEDFVSR--PEKISAADIAAICQEAGMQAV 367 (398)
T ss_pred Hhc-------CCCCcccC---HHHHHHH--cCCCCHHHHHHHHHHHHHHHH
Confidence 654 22222222 3444543 345667889888888555444
No 198
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.53 E-value=1e-13 Score=161.75 Aligned_cols=199 Identities=19% Similarity=0.297 Sum_probs=131.9
Q ss_pred hcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCC----ceEEE-ecccccccc
Q 002012 662 HKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTEN----ALVRI-DMSEYMEKH 736 (982)
Q Consensus 662 ~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~----~~v~i-~~s~~~~~~ 736 (982)
+.+++||+.+++.+..++... +-...+||+||+|+|||++|+++++.+++... ++..+ +|..+.. .
T Consensus 13 fdeiiGqe~v~~~L~~~I~~g--------rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~-~ 83 (535)
T PRK08451 13 FDELIGQESVSKTLSLALDNN--------RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALE-N 83 (535)
T ss_pred HHHccCcHHHHHHHHHHHHcC--------CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhh-c
Confidence 478999999999999988633 11223799999999999999999999965321 11111 1111100 0
Q ss_pred ccccc-cCCCCCccccccCCchhHHHhh----CCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEE
Q 002012 737 SVSRL-VGAPPGYVGYEEGGQLTEVVRR----RPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIM 811 (982)
Q Consensus 737 ~~~~l-~g~~~g~vg~~~~~~l~~~l~~----~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~ 811 (982)
....+ -+......|.+..+.+.+.... +++.|++|||+|.++.+.+++|++.||+- ..+++||+
T Consensus 84 ~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEp-----------p~~t~FIL 152 (535)
T PRK08451 84 RHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEP-----------PSYVKFIL 152 (535)
T ss_pred CCCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhc-----------CCceEEEE
Confidence 01111 1111111222222222222222 34579999999999999999999999972 24688888
Q ss_pred ecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHHHHHHHHHhCC
Q 002012 812 TSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKK 891 (982)
Q Consensus 812 tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~~~~~~~~~ 891 (982)
+++.... +.+++.+|+ ..+.|.|++.+++...+...+.+ .|
T Consensus 153 ~ttd~~k-------------------------------L~~tI~SRc-~~~~F~~Ls~~ei~~~L~~Il~~-------EG 193 (535)
T PRK08451 153 ATTDPLK-------------------------------LPATILSRT-QHFRFKQIPQNSIISHLKTILEK-------EG 193 (535)
T ss_pred EECChhh-------------------------------CchHHHhhc-eeEEcCCCCHHHHHHHHHHHHHH-------cC
Confidence 8864321 667899998 69999999999998888777765 45
Q ss_pred CCccCCHHHHHHHHhcCCCCCCCchHHHHHHHH
Q 002012 892 IDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQ 924 (982)
Q Consensus 892 ~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~ 924 (982)
+.++++++++|+..+- ...|.+.+.+++
T Consensus 194 --i~i~~~Al~~Ia~~s~---GdlR~alnlLdq 221 (535)
T PRK08451 194 --VSYEPEALEILARSGN---GSLRDTLTLLDQ 221 (535)
T ss_pred --CCCCHHHHHHHHHHcC---CcHHHHHHHHHH
Confidence 6789999999998632 234566555554
No 199
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=1.3e-13 Score=161.71 Aligned_cols=199 Identities=22% Similarity=0.310 Sum_probs=133.6
Q ss_pred hcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCC---ceEEE-eccccccccc
Q 002012 662 HKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTEN---ALVRI-DMSEYMEKHS 737 (982)
Q Consensus 662 ~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~---~~v~i-~~s~~~~~~~ 737 (982)
+++|+||++++..|..++...+ ....+||+||||||||++|+++|+.+.+.+. ++..+ .|..+.. ..
T Consensus 13 ~~dvvGq~~v~~~L~~~i~~~~--------l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~-~~ 83 (504)
T PRK14963 13 FDEVVGQEHVKEVLLAALRQGR--------LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRR-GA 83 (504)
T ss_pred HHHhcChHHHHHHHHHHHHcCC--------CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhc-CC
Confidence 4679999999999988887432 1223699999999999999999999864321 11111 1111110 00
Q ss_pred cccc--cCCCCCccccccCCchhHHHhh----CCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEE
Q 002012 738 VSRL--VGAPPGYVGYEEGGQLTEVVRR----RPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIM 811 (982)
Q Consensus 738 ~~~l--~g~~~g~vg~~~~~~l~~~l~~----~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~ 811 (982)
...+ ++. .+..+.+..+.+.+.+.. ..+.||||||+|.+....++.|++.|++.. .+++||+
T Consensus 84 h~dv~el~~-~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~-----------~~t~~Il 151 (504)
T PRK14963 84 HPDVLEIDA-ASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPP-----------EHVIFIL 151 (504)
T ss_pred CCceEEecc-cccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCC-----------CCEEEEE
Confidence 1111 111 112222222334444433 345799999999999999999999999721 3578888
Q ss_pred ecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHHHHHHHHHhCC
Q 002012 812 TSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKK 891 (982)
Q Consensus 812 tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~~~~~~~~~ 891 (982)
+++.... +.+.+.+|| ..+.|.|++.+++.+.+...+++ .|
T Consensus 152 ~t~~~~k-------------------------------l~~~I~SRc-~~~~f~~ls~~el~~~L~~i~~~-------eg 192 (504)
T PRK14963 152 ATTEPEK-------------------------------MPPTILSRT-QHFRFRRLTEEEIAGKLRRLLEA-------EG 192 (504)
T ss_pred EcCChhh-------------------------------CChHHhcce-EEEEecCCCHHHHHHHHHHHHHH-------cC
Confidence 8764321 667888999 58999999999999999888875 45
Q ss_pred CCccCCHHHHHHHHhcCCCCCCCchHHHHHHHHH
Q 002012 892 IDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQL 925 (982)
Q Consensus 892 ~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~ 925 (982)
+.++++++++|+..+ . -..|.+.+.++++
T Consensus 193 --i~i~~~Al~~ia~~s-~--GdlR~aln~Lekl 221 (504)
T PRK14963 193 --REAEPEALQLVARLA-D--GAMRDAESLLERL 221 (504)
T ss_pred --CCCCHHHHHHHHHHc-C--CCHHHHHHHHHHH
Confidence 678999999999863 2 2346666666653
No 200
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.52 E-value=9.9e-14 Score=165.16 Aligned_cols=200 Identities=21% Similarity=0.262 Sum_probs=136.7
Q ss_pred hhcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCC---------ceEEE-ecc
Q 002012 661 LHKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTEN---------ALVRI-DMS 730 (982)
Q Consensus 661 l~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~---------~~v~i-~~s 730 (982)
.+.+|+||+.+++.|.+++... +....+||+||+|+|||++|+++|+.+++... ++-.+ .|.
T Consensus 22 ~f~dliGq~~~v~~L~~~~~~g--------ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~ 93 (598)
T PRK09111 22 TFDDLIGQEAMVRTLTNAFETG--------RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQ 93 (598)
T ss_pred CHHHhcCcHHHHHHHHHHHHcC--------CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHH
Confidence 3578999999999999988743 22235999999999999999999999965321 11111 111
Q ss_pred cccccccccccc-CCCCCccccccCCchhHHHhhC----CCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecc
Q 002012 731 EYMEKHSVSRLV-GAPPGYVGYEEGGQLTEVVRRR----PYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFT 805 (982)
Q Consensus 731 ~~~~~~~~~~l~-g~~~g~vg~~~~~~l~~~l~~~----~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~ 805 (982)
.+.. ..+..++ -.+.+..|.++.+.+.+.+... .+.|+||||+|.++...+|.|++.||+- ..
T Consensus 94 ~i~~-g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEeP-----------p~ 161 (598)
T PRK09111 94 AIME-GRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEP-----------PP 161 (598)
T ss_pred HHhc-CCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhC-----------CC
Confidence 1111 1111111 1112234444444455555543 4679999999999999999999999972 23
Q ss_pred cEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHHHHHH
Q 002012 806 NCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKD 885 (982)
Q Consensus 806 ~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~~~ 885 (982)
+++||++++.... +.+.+.+|| ..+.|.+++.+++...+...+++
T Consensus 162 ~~~fIl~tte~~k-------------------------------ll~tI~SRc-q~~~f~~l~~~el~~~L~~i~~k--- 206 (598)
T PRK09111 162 HVKFIFATTEIRK-------------------------------VPVTVLSRC-QRFDLRRIEADVLAAHLSRIAAK--- 206 (598)
T ss_pred CeEEEEEeCChhh-------------------------------hhHHHHhhe-eEEEecCCCHHHHHHHHHHHHHH---
Confidence 5888888753221 456788999 68999999999999999888765
Q ss_pred HHHhCCCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHH
Q 002012 886 RLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQ 924 (982)
Q Consensus 886 ~~~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~ 924 (982)
.+ +.++++++++|+..+- ...|.+.+.+++
T Consensus 207 ----eg--i~i~~eAl~lIa~~a~---Gdlr~al~~Ldk 236 (598)
T PRK09111 207 ----EG--VEVEDEALALIARAAE---GSVRDGLSLLDQ 236 (598)
T ss_pred ----cC--CCCCHHHHHHHHHHcC---CCHHHHHHHHHH
Confidence 34 7789999999988632 234666666655
No 201
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=3.9e-14 Score=148.05 Aligned_cols=161 Identities=23% Similarity=0.346 Sum_probs=131.0
Q ss_pred CCCCcccchHHHHHHHHHhc-------------cCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEec
Q 002012 267 KLDPVIGRDDEIRRCIQILS-------------RRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDM 333 (982)
Q Consensus 267 ~l~~liG~~~~i~~l~~~L~-------------~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~ 333 (982)
.|+.+-|--..++.+.+.+. -..+..++|+||||+|||.+|+++|..+ ++.++.+..
T Consensus 130 s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~m----------g~nfl~v~s 199 (388)
T KOG0651|consen 130 SFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATM----------GVNFLKVVS 199 (388)
T ss_pred CHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhc----------CCceEEeeH
Confidence 67777777777777766442 1456678999999999999999999998 999999999
Q ss_pred ccccccccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCC---chhhHHHHHHhhhc-------CCCeEEEE
Q 002012 334 ASLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQS---GAMDASNMLKPMLG-------RGELRCIG 403 (982)
Q Consensus 334 ~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~---~~~~~~~~L~~~le-------~g~i~vI~ 403 (982)
+++.+ +|.|+....+++.|..+.+ ..+||||+||||.+.+...+. ..+.++..|..+++ .+++.+|+
T Consensus 200 s~lv~--kyiGEsaRlIRemf~yA~~-~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~Im 276 (388)
T KOG0651|consen 200 SALVD--KYIGESARLIRDMFRYARE-VIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIM 276 (388)
T ss_pred hhhhh--hhcccHHHHHHHHHHHHhh-hCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEE
Confidence 99995 5999999999999999987 678999999999987654333 34566666666553 47999999
Q ss_pred ecCchhHhhhhhcChHHHh--ccc-eEEecCCCHHHHHHHHHHHH
Q 002012 404 ATTLNEYRNYIEKDPALER--RFQ-QVFCDQPSVENTISILRGLR 445 (982)
Q Consensus 404 at~~~~~~~~~~~d~al~r--Rf~-~i~i~~Ps~~e~~~IL~~~~ 445 (982)
|||.++ -+||+|.| |++ .++++.|....+..|++-..
T Consensus 277 atNrpd-----tLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~ 316 (388)
T KOG0651|consen 277 ATNRPD-----TLDPALLRPGRLDRKVEIPLPNEQARLGILKIHV 316 (388)
T ss_pred ecCCcc-----ccchhhcCCccccceeccCCcchhhceeeEeecc
Confidence 999999 79999999 886 89999999888888775433
No 202
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.51 E-value=3.1e-13 Score=146.91 Aligned_cols=163 Identities=21% Similarity=0.349 Sum_probs=115.2
Q ss_pred HHHHHHHhccCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccccccccccHH----HH-H--
Q 002012 278 IRRCIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGTCYRGDFE----KR-L-- 350 (982)
Q Consensus 278 i~~l~~~L~~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~~~~g~~e----~~-l-- 350 (982)
+++++..+. ...+++|+||||||||++|+.+|+.+ +.+++.+++..-.......|... .. .
T Consensus 11 ~~~~l~~l~--~g~~vLL~G~~GtGKT~lA~~la~~l----------g~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~ 78 (262)
T TIGR02640 11 TSRALRYLK--SGYPVHLRGPAGTGKTTLAMHVARKR----------DRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQ 78 (262)
T ss_pred HHHHHHHHh--cCCeEEEEcCCCCCHHHHHHHHHHHh----------CCCEEEEeCCccCCHHHHhhhhcccchhhHHHH
Confidence 444555544 34589999999999999999999977 77888887654221111111110 00 0
Q ss_pred ------------------HHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCC---------------
Q 002012 351 ------------------KAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRG--------------- 397 (982)
Q Consensus 351 ------------------~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g--------------- 397 (982)
..++..+. .+.+|+|||++.+. .++++.|+.+++.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~g~l~~A~~---~g~~lllDEi~r~~--------~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~ 147 (262)
T TIGR02640 79 FIHNVVKLEDIVRQNWVDNRLTLAVR---EGFTLVYDEFTRSK--------PETNNVLLSVFEEGVLELPGKRGTSRYVD 147 (262)
T ss_pred HHHHhhhhhcccceeecCchHHHHHH---cCCEEEEcchhhCC--------HHHHHHHHHHhcCCeEEccCCCCCCceEe
Confidence 11222221 23499999999975 67888899888643
Q ss_pred ---CeEEEEecCchhHhhhhhcChHHHhccceEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhh
Q 002012 398 ---ELRCIGATTLNEYRNYIEKDPALERRFQQVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYI 472 (982)
Q Consensus 398 ---~i~vI~at~~~~~~~~~~~d~al~rRf~~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i 472 (982)
.+++|+|+|+..|.....++++|.+||..+.++.|+.++..+|++.. ..++++..+.++.+....-
T Consensus 148 ~~~~frvIaTsN~~~~~g~~~l~~aL~~R~~~i~i~~P~~~~e~~Il~~~---------~~~~~~~~~~iv~~~~~~R 216 (262)
T TIGR02640 148 VHPEFRVIFTSNPVEYAGVHETQDALLDRLITIFMDYPDIDTETAILRAK---------TDVAEDSAATIVRLVREFR 216 (262)
T ss_pred cCCCCEEEEeeCCccccceecccHHHHhhcEEEECCCCCHHHHHHHHHHh---------hCCCHHHHHHHHHHHHHHH
Confidence 45899999998887777789999999999999999999999998742 2367778888888766544
No 203
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.50 E-value=3.6e-13 Score=152.66 Aligned_cols=197 Identities=18% Similarity=0.377 Sum_probs=132.0
Q ss_pred hcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCC--CceEEEeccccccccccc
Q 002012 662 HKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTE--NALVRIDMSEYMEKHSVS 739 (982)
Q Consensus 662 ~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~--~~~v~i~~s~~~~~~~~~ 739 (982)
+.+++|+++++..+..++.. ...++++|+||||||||++|+++++.+++.. .+++.++++++.... .
T Consensus 14 ~~~~~g~~~~~~~L~~~~~~---------~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~--~ 82 (337)
T PRK12402 14 LEDILGQDEVVERLSRAVDS---------PNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQG--K 82 (337)
T ss_pred HHHhcCCHHHHHHHHHHHhC---------CCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcc--h
Confidence 36788999999998887752 1122599999999999999999999986543 457888887763221 0
Q ss_pred cccCCCCCcc---------ccccCCchhHHHh--------hCCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEE
Q 002012 740 RLVGAPPGYV---------GYEEGGQLTEVVR--------RRPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTV 802 (982)
Q Consensus 740 ~l~g~~~g~v---------g~~~~~~l~~~l~--------~~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~ 802 (982)
..++..+.+. +......+.+.++ ..+..||||||+|.+++..++.|+.+++...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~--------- 153 (337)
T PRK12402 83 KYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYS--------- 153 (337)
T ss_pred hhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhcc---------
Confidence 0111111100 0000111222111 1345799999999999999999999998621
Q ss_pred ecccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHHH
Q 002012 803 SFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNR 882 (982)
Q Consensus 803 ~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~ 882 (982)
.++.||++++.... +.+.+.+|+ ..+.|.|++.+++..++...+.+
T Consensus 154 --~~~~~Il~~~~~~~-------------------------------~~~~L~sr~-~~v~~~~~~~~~~~~~l~~~~~~ 199 (337)
T PRK12402 154 --RTCRFIIATRQPSK-------------------------------LIPPIRSRC-LPLFFRAPTDDELVDVLESIAEA 199 (337)
T ss_pred --CCCeEEEEeCChhh-------------------------------CchhhcCCc-eEEEecCCCHHHHHHHHHHHHHH
Confidence 23667777764321 345677888 57999999999998888887664
Q ss_pred HHHHHHhCCCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHH
Q 002012 883 VKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQ 924 (982)
Q Consensus 883 ~~~~~~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~ 924 (982)
.+ +.+++++++.|+... .+ +.|.+.+.++.
T Consensus 200 -------~~--~~~~~~al~~l~~~~-~g--dlr~l~~~l~~ 229 (337)
T PRK12402 200 -------EG--VDYDDDGLELIAYYA-GG--DLRKAILTLQT 229 (337)
T ss_pred -------cC--CCCCHHHHHHHHHHc-CC--CHHHHHHHHHH
Confidence 44 569999999999874 33 34555555543
No 204
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=2.6e-13 Score=137.49 Aligned_cols=196 Identities=26% Similarity=0.445 Sum_probs=135.3
Q ss_pred hcccccchHHHHHHHHHHHHHh--------cCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccc
Q 002012 662 HKRVIGQDIAVKSVADAIRRSR--------AGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYM 733 (982)
Q Consensus 662 ~~~iiGq~~a~~~l~~~i~~~~--------~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~ 733 (982)
..+|-|.+-.+..|.+++.... .|+. |+..+|++||||||||++|+++|+.- ...|+++.+++|.
T Consensus 154 y~diggld~qkqeireavelplt~~~ly~qigid----pprgvllygppg~gktml~kava~~t---~a~firvvgsefv 226 (408)
T KOG0727|consen 154 YADIGGLDVQKQEIREAVELPLTHADLYKQIGID----PPRGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGSEFV 226 (408)
T ss_pred ccccccchhhHHHHHHHHhccchHHHHHHHhCCC----CCcceEEeCCCCCcHHHHHHHHhhcc---chheeeeccHHHH
Confidence 3567888888888888874321 1332 22349999999999999999999864 6789999999985
Q ss_pred cccccccccCCCCCccccccCCchhHHHhhCCCeEEEEcccccc-----------CHHHHHHHHHhhhcCceecCCCcEE
Q 002012 734 EKHSVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEIEKA-----------HQDVFNILLQLLDDGRITDSQGRTV 802 (982)
Q Consensus 734 ~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~~~~~Vl~lDEidkl-----------~~~~~~~Ll~~le~g~~~d~~g~~~ 802 (982)
. +++|..|..+ +.++...+++.++||||||||.. +.++|..|+.+|..- | |. -
T Consensus 227 q-----kylgegprmv-----rdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqm---d--gf-d 290 (408)
T KOG0727|consen 227 Q-----KYLGEGPRMV-----RDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQM---D--GF-D 290 (408)
T ss_pred H-----HHhccCcHHH-----HHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhc---c--Cc-C
Confidence 4 4566544332 45788888888999999999975 456888888887531 1 10 1
Q ss_pred ecccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHH--hccccccccCCCChhHHHHHHHHHH
Q 002012 803 SFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFL--NRIDEYIVFQPLDSKEISKIVEIQM 880 (982)
Q Consensus 803 ~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll--~Rid~ii~F~pl~~~~l~~il~~~l 880 (982)
...|+-+||+||... +++|+++ +|+|..|.|+-+++.+.+-++....
T Consensus 291 q~~nvkvimatnrad-------------------------------tldpallrpgrldrkiefplpdrrqkrlvf~tit 339 (408)
T KOG0727|consen 291 QTTNVKVIMATNRAD-------------------------------TLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTIT 339 (408)
T ss_pred cccceEEEEecCccc-------------------------------ccCHhhcCCccccccccCCCCchhhhhhhHHhhh
Confidence 126899999999743 2677777 8999999999888888766665554
Q ss_pred HHHHHHHHhCCCCccCCHHH--HHHHHhcCCCCCCCchHHHHHHHHH
Q 002012 881 NRVKDRLKQKKIDLHYTKEA--VTLLGILGFDPNFGARPVKRVIQQL 925 (982)
Q Consensus 881 ~~~~~~~~~~~~~l~i~~~a--~~~L~~~~~~~~~gaR~L~~~i~~~ 925 (982)
.+ ..+++++ -++++. +..+++..+..+++..
T Consensus 340 sk-----------m~ls~~vdle~~v~r---pdkis~adi~aicqea 372 (408)
T KOG0727|consen 340 SK-----------MNLSDEVDLEDLVAR---PDKISGADINAICQEA 372 (408)
T ss_pred hc-----------ccCCcccCHHHHhcC---ccccchhhHHHHHHHH
Confidence 43 2333332 233332 3344555676666664
No 205
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.50 E-value=1.1e-12 Score=154.94 Aligned_cols=211 Identities=18% Similarity=0.139 Sum_probs=141.5
Q ss_pred CCCcccchHHHHHHHHHhcc----CCCCCc-EEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEeccccccc---
Q 002012 268 LDPVIGRDDEIRRCIQILSR----RTKNNP-VIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAG--- 339 (982)
Q Consensus 268 l~~liG~~~~i~~l~~~L~~----~~~~~i-LL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~--- 339 (982)
.+.+.||+++++.+..+|.. ...+++ +|+|+||||||++++.+.+.+....--..+....++++||..+...
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sI 833 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAA 833 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHH
Confidence 35689999999999887754 344455 4899999999999999998885421111233577889998543311
Q ss_pred -----------ccccc-cHHHHHHHHHHHHHhc-CCCeEEEEccchhhhhCCCCCchhhHHHHHHh-hhcCCCeEEEEec
Q 002012 340 -----------TCYRG-DFEKRLKAVLKEVTKS-NGQIILFIDELHTIIGAGNQSGAMDASNMLKP-MLGRGELRCIGAT 405 (982)
Q Consensus 340 -----------~~~~g-~~e~~l~~l~~~~~~~-~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~-~le~g~i~vI~at 405 (982)
....| .....+..+|..+... ....||+|||||.|...+ ...+.+++.. ....+.+.+||++
T Consensus 834 YqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~----QDVLYnLFR~~~~s~SKLiLIGIS 909 (1164)
T PTZ00112 834 YQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKT----QKVLFTLFDWPTKINSKLVLIAIS 909 (1164)
T ss_pred HHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccH----HHHHHHHHHHhhccCCeEEEEEec
Confidence 01111 2334455666655332 334699999999997432 1222223321 2235679999999
Q ss_pred CchhHhhhhhcChHHHhccc--eEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCCcchhhH
Q 002012 406 TLNEYRNYIEKDPALERRFQ--QVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLPDKAID 483 (982)
Q Consensus 406 ~~~~~~~~~~~d~al~rRf~--~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~p~~a~~ 483 (982)
|..++.. .++|.+++||. .+.|++++.+++..||+.-++.. ...++++++..++..+...- .-.++|++
T Consensus 910 NdlDLpe--rLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A----~gVLdDdAIELIArkVAq~S---GDARKALD 980 (1164)
T PTZ00112 910 NTMDLPE--RLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENC----KEIIDHTAIQLCARKVANVS---GDIRKALQ 980 (1164)
T ss_pred Cchhcch--hhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhC----CCCCCHHHHHHHHHhhhhcC---CHHHHHHH
Confidence 9765433 46899999985 58888889999999997666542 34689999999998655322 22377888
Q ss_pred HHHHHHHH
Q 002012 484 LVDEAAAK 491 (982)
Q Consensus 484 lld~a~~~ 491 (982)
+|..|+..
T Consensus 981 ILRrAgEi 988 (1164)
T PTZ00112 981 ICRKAFEN 988 (1164)
T ss_pred HHHHHHhh
Confidence 88888854
No 206
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=2.8e-13 Score=156.40 Aligned_cols=199 Identities=19% Similarity=0.288 Sum_probs=144.0
Q ss_pred CcccchHHHHHHHHHhcc------CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEeccccccc----
Q 002012 270 PVIGRDDEIRRCIQILSR------RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAG---- 339 (982)
Q Consensus 270 ~liG~~~~i~~l~~~L~~------~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~---- 339 (982)
+--|.++..+|+++.|.- ...+-+||+||||||||+|++.+|+.+ +..++.+.++.+...
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al----------~RkfvR~sLGGvrDEAEIR 393 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKAL----------GRKFVRISLGGVRDEAEIR 393 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHh----------CCCEEEEecCccccHHHhc
Confidence 567888899999987642 223446788999999999999999999 999999988766542
Q ss_pred ---ccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhc-----------------CCCe
Q 002012 340 ---TCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLG-----------------RGEL 399 (982)
Q Consensus 340 ---~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le-----------------~g~i 399 (982)
-.|.|...+++-+-+..+...+ | +++|||||.+..+-.+ |.+..|+.+|+ -.+|
T Consensus 394 GHRRTYIGamPGrIiQ~mkka~~~N-P-v~LLDEIDKm~ss~rG----DPaSALLEVLDPEQN~~F~DhYLev~yDLS~V 467 (782)
T COG0466 394 GHRRTYIGAMPGKIIQGMKKAGVKN-P-VFLLDEIDKMGSSFRG----DPASALLEVLDPEQNNTFSDHYLEVPYDLSKV 467 (782)
T ss_pred cccccccccCChHHHHHHHHhCCcC-C-eEEeechhhccCCCCC----ChHHHHHhhcCHhhcCchhhccccCccchhhe
Confidence 3477777777666666665433 4 8999999999754332 23345666664 1368
Q ss_pred EEEEecCchhHhhhhhcChHHHhccceEEecCCCHHHHHHHHHH-HHHHHhhhcC-----CccChHHHHHHHHHhhhhhc
Q 002012 400 RCIGATTLNEYRNYIEKDPALERRFQQVFCDQPSVENTISILRG-LRERYELHHG-----VKISDSALVSAAVLADRYIT 473 (982)
Q Consensus 400 ~vI~at~~~~~~~~~~~d~al~rRf~~i~i~~Ps~~e~~~IL~~-~~~~~~~~~~-----v~i~~~~l~~~~~~s~r~i~ 473 (982)
.||+|+|.-+ .++.+|+.|++.|.+.-++.+|-.+|.+. +..+.-..|| +.++++++..+++...|-..
T Consensus 468 mFiaTANsl~-----tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YTREAG 542 (782)
T COG0466 468 MFIATANSLD-----TIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYTREAG 542 (782)
T ss_pred EEEeecCccc-----cCChHHhcceeeeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHHHHHhHhhh
Confidence 9999999887 68999999999999999999999999854 3444333343 67999999999888655444
Q ss_pred cCCCcchhhHHHHHHH
Q 002012 474 ERFLPDKAIDLVDEAA 489 (982)
Q Consensus 474 ~~~~p~~a~~lld~a~ 489 (982)
-|.+-+....++..+.
T Consensus 543 VR~LeR~i~ki~RK~~ 558 (782)
T COG0466 543 VRNLEREIAKICRKAA 558 (782)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 4444444444443333
No 207
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=2.1e-13 Score=162.49 Aligned_cols=199 Identities=17% Similarity=0.277 Sum_probs=130.4
Q ss_pred hhcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCC------------CceEEE-
Q 002012 661 LHKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTE------------NALVRI- 727 (982)
Q Consensus 661 l~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~------------~~~v~i- 727 (982)
-+++|+||+.+++.|.+++...+. ...+||+||+|||||++|+.+|+.+++.. .++-.+
T Consensus 14 ~f~eivGQe~i~~~L~~~i~~~ri--------~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~ 85 (620)
T PRK14954 14 KFADITAQEHITHTIQNSLRMDRV--------GHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECE 85 (620)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCC--------CeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCH
Confidence 357899999999999888864221 12399999999999999999999996532 111111
Q ss_pred ecccccccc--ccccccCCCCCccccccCCchhHHHhh----CCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcE
Q 002012 728 DMSEYMEKH--SVSRLVGAPPGYVGYEEGGQLTEVVRR----RPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRT 801 (982)
Q Consensus 728 ~~s~~~~~~--~~~~l~g~~~g~vg~~~~~~l~~~l~~----~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~ 801 (982)
.|..+.... .+..+-| ....+.++.+.+.+.+.. +++.|+||||+|.++...++.|++.||+-
T Consensus 86 sC~~~~~g~~~n~~~~d~--~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEeP--------- 154 (620)
T PRK14954 86 SCRDFDAGTSLNISEFDA--ASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEP--------- 154 (620)
T ss_pred HHHHHhccCCCCeEEecc--cccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCC---------
Confidence 011111000 0111111 111222222333444432 34679999999999999999999999972
Q ss_pred EecccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHH
Q 002012 802 VSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMN 881 (982)
Q Consensus 802 ~~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~ 881 (982)
...++||++++... .+.+++.+|+ .+|.|.+++.+++...+...++
T Consensus 155 --p~~tv~IL~t~~~~-------------------------------kLl~TI~SRc-~~vef~~l~~~ei~~~L~~i~~ 200 (620)
T PRK14954 155 --PPHAIFIFATTELH-------------------------------KIPATIASRC-QRFNFKRIPLDEIQSQLQMICR 200 (620)
T ss_pred --CCCeEEEEEeCChh-------------------------------hhhHHHHhhc-eEEecCCCCHHHHHHHHHHHHH
Confidence 13577887775321 1556889999 7999999999999888877766
Q ss_pred HHHHHHHhCCCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHH
Q 002012 882 RVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQ 924 (982)
Q Consensus 882 ~~~~~~~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~ 924 (982)
. .+ +.++++++++|+..+ . .+.|.+.+.+++
T Consensus 201 ~-------eg--i~I~~eal~~La~~s-~--Gdlr~al~eLeK 231 (620)
T PRK14954 201 A-------EG--IQIDADALQLIARKA-Q--GSMRDAQSILDQ 231 (620)
T ss_pred H-------cC--CCCCHHHHHHHHHHh-C--CCHHHHHHHHHH
Confidence 4 34 678999999998863 2 223555555544
No 208
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.50 E-value=3.1e-13 Score=150.81 Aligned_cols=107 Identities=26% Similarity=0.389 Sum_probs=81.0
Q ss_pred CeEEEEccchhhhhCCCCCc----hhhHHHHHHhhhcC------------CCeEEEEecCchhHhhhhhcChHHHhccc-
Q 002012 363 QIILFIDELHTIIGAGNQSG----AMDASNMLKPMLGR------------GELRCIGATTLNEYRNYIEKDPALERRFQ- 425 (982)
Q Consensus 363 ~~IL~IDEi~~l~~~~~~~~----~~~~~~~L~~~le~------------g~i~vI~at~~~~~~~~~~~d~al~rRf~- 425 (982)
..|+||||||.+...+.+.+ ..-+++-|+++++. .+|.||+++....- +--.+-|.|.-||.
T Consensus 250 ~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~-kp~DlIPEl~GR~Pi 328 (443)
T PRK05201 250 NGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVS-KPSDLIPELQGRFPI 328 (443)
T ss_pred CCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCC-ChhhccHHHhCccce
Confidence 35999999999986643221 23477889998874 57899998875431 22246799999998
Q ss_pred eEEecCCCHHHHHHHH----HHHHHHHhh---hcC--CccChHHHHHHHHHhhh
Q 002012 426 QVFCDQPSVENTISIL----RGLRERYEL---HHG--VKISDSALVSAAVLADR 470 (982)
Q Consensus 426 ~i~i~~Ps~~e~~~IL----~~~~~~~~~---~~~--v~i~~~~l~~~~~~s~r 470 (982)
.+.+..++.+++..|| ..+..+|.. ..| +.++++++..+++.+..
T Consensus 329 ~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~ 382 (443)
T PRK05201 329 RVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQ 382 (443)
T ss_pred EEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHH
Confidence 7888889999999999 567777775 233 57899999999999864
No 209
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.50 E-value=3.7e-13 Score=153.10 Aligned_cols=184 Identities=16% Similarity=0.175 Sum_probs=125.1
Q ss_pred CCCCcccchHHHHHHHHHhccCC----------CCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCC-------------C
Q 002012 267 KLDPVIGRDDEIRRCIQILSRRT----------KNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPET-------------L 323 (982)
Q Consensus 267 ~l~~liG~~~~i~~l~~~L~~~~----------~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~-------------l 323 (982)
.|++|+|+++.++.+.+++.... .+.+||+||||+|||++|+.+|+.+.+...... .
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~ 82 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAG 82 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcC
Confidence 47889999999999999887643 345889999999999999999999876431100 0
Q ss_pred CCCeEEEEecccccccccccccHHHHHHHHHHHHHhc---CCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcC--CC
Q 002012 324 QNRKLISLDMASLVAGTCYRGDFEKRLKAVLKEVTKS---NGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGR--GE 398 (982)
Q Consensus 324 ~~~~v~~l~~~~l~~~~~~~g~~e~~l~~l~~~~~~~---~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~--g~ 398 (982)
....++.+.... . .-..+.++++++.+... ++..|+||||+|.|. ...+|.|+..++. ..
T Consensus 83 ~hpD~~~i~~~~----~---~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~--------~~aanaLLk~LEep~~~ 147 (394)
T PRK07940 83 THPDVRVVAPEG----L---SIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLT--------ERAANALLKAVEEPPPR 147 (394)
T ss_pred CCCCEEEecccc----c---cCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcC--------HHHHHHHHHHhhcCCCC
Confidence 111222332211 0 01123356666665432 345699999999996 5566888888885 24
Q ss_pred eEEEEecCchhHhhhhhcChHHHhccceEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCCc
Q 002012 399 LRCIGATTLNEYRNYIEKDPALERRFQQVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLP 478 (982)
Q Consensus 399 i~vI~at~~~~~~~~~~~d~al~rRf~~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~p 478 (982)
..+|.+|+... .+.|+++|||+.+.|..|+.++...+|.. + . .++++....++.+|++. |
T Consensus 148 ~~fIL~a~~~~-----~llpTIrSRc~~i~f~~~~~~~i~~~L~~---~----~--~~~~~~a~~la~~s~G~------~ 207 (394)
T PRK07940 148 TVWLLCAPSPE-----DVLPTIRSRCRHVALRTPSVEAVAEVLVR---R----D--GVDPETARRAARASQGH------I 207 (394)
T ss_pred CeEEEEECChH-----HChHHHHhhCeEEECCCCCHHHHHHHHHH---h----c--CCCHHHHHHHHHHcCCC------H
Confidence 44444444444 68999999999999999999987777651 1 1 25677778888887754 3
Q ss_pred chhhHHH
Q 002012 479 DKAIDLV 485 (982)
Q Consensus 479 ~~a~~ll 485 (982)
..+..++
T Consensus 208 ~~A~~l~ 214 (394)
T PRK07940 208 GRARRLA 214 (394)
T ss_pred HHHHHHh
Confidence 5555554
No 210
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.49 E-value=2e-13 Score=159.70 Aligned_cols=201 Identities=25% Similarity=0.416 Sum_probs=133.8
Q ss_pred hhcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCC----CceEE-Eeccccccc
Q 002012 661 LHKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTE----NALVR-IDMSEYMEK 735 (982)
Q Consensus 661 l~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~----~~~v~-i~~s~~~~~ 735 (982)
.+.+++||+.++..+.+++...+ ....+||+||+|+|||++|+.+|+.+++.+ .++-. .+|..+...
T Consensus 14 ~f~diiGq~~i~~~L~~~i~~~~--------i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g 85 (486)
T PRK14953 14 FFKEVIGQEIVVRILKNAVKLQR--------VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKG 85 (486)
T ss_pred cHHHccChHHHHHHHHHHHHcCC--------CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcC
Confidence 34779999999999999887431 222388999999999999999999986421 12211 122211110
Q ss_pred ccccccc-CCCCCccccccCCchhHHHhhCC----CeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEE
Q 002012 736 HSVSRLV-GAPPGYVGYEEGGQLTEVVRRRP----YSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVI 810 (982)
Q Consensus 736 ~~~~~l~-g~~~g~vg~~~~~~l~~~l~~~~----~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI 810 (982)
....++ .......|.+..+.+.+.+...| +.|++|||+|.++.+.++.|++.|++. ..+++||
T Consensus 86 -~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEep-----------p~~~v~I 153 (486)
T PRK14953 86 -SFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEP-----------PPRTIFI 153 (486)
T ss_pred -CCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcC-----------CCCeEEE
Confidence 011110 01111233333344555555443 579999999999999999999999962 1357777
Q ss_pred EecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHHHHHHHHHhC
Q 002012 811 MTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQK 890 (982)
Q Consensus 811 ~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~~~~~~~~ 890 (982)
++|+.... +.+++.+|| ..+.|.|++.+++..++...++. .
T Consensus 154 l~tt~~~k-------------------------------l~~tI~SRc-~~i~f~~ls~~el~~~L~~i~k~-------e 194 (486)
T PRK14953 154 LCTTEYDK-------------------------------IPPTILSRC-QRFIFSKPTKEQIKEYLKRICNE-------E 194 (486)
T ss_pred EEECCHHH-------------------------------HHHHHHHhc-eEEEcCCCCHHHHHHHHHHHHHH-------c
Confidence 77653211 455788999 58999999999999988887765 4
Q ss_pred CCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHHH
Q 002012 891 KIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQL 925 (982)
Q Consensus 891 ~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~ 925 (982)
| +.+++++++.|+..+ . .+.|.+.+.+++.
T Consensus 195 g--i~id~~al~~La~~s-~--G~lr~al~~Ldkl 224 (486)
T PRK14953 195 K--IEYEEKALDLLAQAS-E--GGMRDAASLLDQA 224 (486)
T ss_pred C--CCCCHHHHHHHHHHc-C--CCHHHHHHHHHHH
Confidence 4 678999999999862 2 2356666666553
No 211
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.49 E-value=2.3e-13 Score=158.15 Aligned_cols=199 Identities=20% Similarity=0.314 Sum_probs=133.5
Q ss_pred hhcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCC-----ceEE-Eecccccc
Q 002012 661 LHKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTEN-----ALVR-IDMSEYME 734 (982)
Q Consensus 661 l~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~-----~~v~-i~~s~~~~ 734 (982)
-+.+|+||+.++..+.+.+... +....+||+||+|+|||++|+.+|+.+++... ++.. .+|..+..
T Consensus 15 ~~~diiGq~~~v~~L~~~i~~~--------~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~ 86 (451)
T PRK06305 15 TFSEILGQDAVVAVLKNALRFN--------RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISS 86 (451)
T ss_pred CHHHhcCcHHHHHHHHHHHHcC--------CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhc
Confidence 3578999999999998888742 22234999999999999999999999965321 1111 11222211
Q ss_pred cc--ccccccCCCCCccccccCCchhHHHh----hCCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEE
Q 002012 735 KH--SVSRLVGAPPGYVGYEEGGQLTEVVR----RRPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCV 808 (982)
Q Consensus 735 ~~--~~~~l~g~~~g~vg~~~~~~l~~~l~----~~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~i 808 (982)
.. .+..+-|. ...|.+..+.+.+.+. ...+.|+||||+|.++.+.++.|++.||+-. .+++
T Consensus 87 ~~~~d~~~i~g~--~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~-----------~~~~ 153 (451)
T PRK06305 87 GTSLDVLEIDGA--SHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPP-----------QHVK 153 (451)
T ss_pred CCCCceEEeecc--ccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCC-----------CCce
Confidence 11 11112121 1233333333333333 2457899999999999999999999999721 3578
Q ss_pred EEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHHHHHHHHH
Q 002012 809 VIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLK 888 (982)
Q Consensus 809 iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~~~~~~ 888 (982)
||+++|... .+.+.+.+|| ..+.|.+++.+++.+.+...+++
T Consensus 154 ~Il~t~~~~-------------------------------kl~~tI~sRc-~~v~f~~l~~~el~~~L~~~~~~------ 195 (451)
T PRK06305 154 FFLATTEIH-------------------------------KIPGTILSRC-QKMHLKRIPEETIIDKLALIAKQ------ 195 (451)
T ss_pred EEEEeCChH-------------------------------hcchHHHHhc-eEEeCCCCCHHHHHHHHHHHHHH------
Confidence 888876321 1567899999 68999999999999888777654
Q ss_pred hCCCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHH
Q 002012 889 QKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQ 924 (982)
Q Consensus 889 ~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~ 924 (982)
.+ +.+++++++.|+..+ .+ +.|.+.+.+++
T Consensus 196 -eg--~~i~~~al~~L~~~s-~g--dlr~a~~~Lek 225 (451)
T PRK06305 196 -EG--IETSREALLPIARAA-QG--SLRDAESLYDY 225 (451)
T ss_pred -cC--CCCCHHHHHHHHHHc-CC--CHHHHHHHHHH
Confidence 34 678999999999863 22 23555555554
No 212
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=2.1e-13 Score=164.84 Aligned_cols=204 Identities=25% Similarity=0.364 Sum_probs=154.4
Q ss_pred CCCCCcccchHHHHHHHHHhcc-------------CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEe
Q 002012 266 GKLDPVIGRDDEIRRCIQILSR-------------RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLD 332 (982)
Q Consensus 266 ~~l~~liG~~~~i~~l~~~L~~-------------~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~ 332 (982)
-.|+++=|-++.+..+.++..- -+++.+||+||||||||.+|+++|..+..+. ....++--+
T Consensus 262 v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~-----~kisffmrk 336 (1080)
T KOG0732|consen 262 VGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGN-----RKISFFMRK 336 (1080)
T ss_pred cCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccc-----cccchhhhc
Confidence 4677787787777666664311 3567899999999999999999999886542 122222222
Q ss_pred cccccccccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCc---hhhHHHHHHhhhc----CCCeEEEEec
Q 002012 333 MASLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSG---AMDASNMLKPMLG----RGELRCIGAT 405 (982)
Q Consensus 333 ~~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~---~~~~~~~L~~~le----~g~i~vI~at 405 (982)
-++.. .+|.|+.+..++-+|++++. ..|.|+|+|||+-+.+.+.+.- ...+...|+.+|+ +|.+++||||
T Consensus 337 gaD~l--skwvgEaERqlrllFeeA~k-~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigAT 413 (1080)
T KOG0732|consen 337 GADCL--SKWVGEAERQLRLLFEEAQK-TQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGAT 413 (1080)
T ss_pred Cchhh--ccccCcHHHHHHHHHHHHhc-cCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEccc
Confidence 23333 57999999999999999987 6789999999998887764332 2345566777775 8999999999
Q ss_pred CchhHhhhhhcChHHHh--ccc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCCcchhh
Q 002012 406 TLNEYRNYIEKDPALER--RFQ-QVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLPDKAI 482 (982)
Q Consensus 406 ~~~~~~~~~~~d~al~r--Rf~-~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~p~~a~ 482 (982)
|+++ .+||+++| ||+ .++|+.|+.+.+.+|+.....++ .-.++...+..++..+.+|.. .+..
T Consensus 414 nRpd-----a~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw----~~~i~~~l~~~la~~t~gy~g-----aDlk 479 (1080)
T KOG0732|consen 414 NRPD-----AIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKW----EPPISRELLLWLAEETSGYGG-----ADLK 479 (1080)
T ss_pred CCcc-----ccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCC----CCCCCHHHHHHHHHhccccch-----HHHH
Confidence 9999 79999999 897 99999999999999998766664 356778888888888777753 4566
Q ss_pred HHHHHHHHH
Q 002012 483 DLVDEAAAK 491 (982)
Q Consensus 483 ~lld~a~~~ 491 (982)
.|+.+|+-.
T Consensus 480 aLCTeAal~ 488 (1080)
T KOG0732|consen 480 ALCTEAALI 488 (1080)
T ss_pred HHHHHHhhh
Confidence 666666543
No 213
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.48 E-value=7.3e-13 Score=144.30 Aligned_cols=158 Identities=14% Similarity=0.147 Sum_probs=108.7
Q ss_pred CCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccccccccCCCCCccccccC--CchhHHHh-----
Q 002012 690 ARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRLVGAPPGYVGYEEG--GQLTEVVR----- 762 (982)
Q Consensus 690 ~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l~g~~~g~vg~~~~--~~l~~~l~----- 762 (982)
+.|.+ ++|+||||||||.+|+++|+.+ +.+++.++++++..+ |+|..+. +.++...+
T Consensus 146 k~Plg-llL~GPPGcGKTllAraiA~el---g~~~i~vsa~eL~sk------------~vGEsEk~IR~~F~~A~~~a~~ 209 (413)
T PLN00020 146 KVPLI-LGIWGGKGQGKSFQCELVFKKM---GIEPIVMSAGELESE------------NAGEPGKLIRQRYREAADIIKK 209 (413)
T ss_pred CCCeE-EEeeCCCCCCHHHHHHHHHHHc---CCCeEEEEHHHhhcC------------cCCcHHHHHHHHHHHHHHHhhc
Confidence 34444 9999999999999999999998 888999999987533 5554433 23333333
Q ss_pred hCCCeEEEEccccccCHH------------HHHHHHHhhhcCceecCCC---cEEecccEEEEEecCCChHHHHHhhhhc
Q 002012 763 RRPYSVVLFDEIEKAHQD------------VFNILLQLLDDGRITDSQG---RTVSFTNCVVIMTSNIGSHYILETLQSV 827 (982)
Q Consensus 763 ~~~~~Vl~lDEidkl~~~------------~~~~Ll~~le~g~~~d~~g---~~~~~~~~iiI~tsn~~~~~i~~~~~~~ 827 (982)
+..+|||||||||.+.+. +...|+.++|.-....-.| ..-...++.||+|||....
T Consensus 210 ~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~--------- 280 (413)
T PLN00020 210 KGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFST--------- 280 (413)
T ss_pred cCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCccc---------
Confidence 235799999999987432 2357777777411000001 0112356889999997653
Q ss_pred ccchHHHHHHHHHHHHHHHHhhcChHHHh--ccccccccCCCChhHHHHHHHHHHHHHHHHHHhCCCCccCCHHHHHHHH
Q 002012 828 QDSKEAVYEVMKKQVVELARQTFRPEFLN--RIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLG 905 (982)
Q Consensus 828 ~~~~~~~~~~~~~~~~~~~~~~f~p~ll~--Rid~ii~F~pl~~~~l~~il~~~l~~~~~~~~~~~~~l~i~~~a~~~L~ 905 (982)
+.|+|+. |||..+ ..++.++..+|++..++. ..++..-+..|+
T Consensus 281 ----------------------LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~-----------~~l~~~dv~~Lv 325 (413)
T PLN00020 281 ----------------------LYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRD-----------DGVSREDVVKLV 325 (413)
T ss_pred ----------------------CCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhcc-----------CCCCHHHHHHHH
Confidence 7888986 999764 478999999999987765 345566666676
Q ss_pred hc
Q 002012 906 IL 907 (982)
Q Consensus 906 ~~ 907 (982)
..
T Consensus 326 ~~ 327 (413)
T PLN00020 326 DT 327 (413)
T ss_pred Hc
Confidence 64
No 214
>PRK06893 DNA replication initiation factor; Validated
Probab=99.48 E-value=9.8e-13 Score=140.12 Aligned_cols=179 Identities=17% Similarity=0.193 Sum_probs=114.8
Q ss_pred cCCCCCcccchHHH--HHHHHHhccCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccccccc
Q 002012 265 SGKLDPVIGRDDEI--RRCIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGTCY 342 (982)
Q Consensus 265 ~~~l~~liG~~~~i--~~l~~~L~~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~~~ 342 (982)
+.+|++++|.++.. ..+.+.......+.++|+||||||||++++++++.+... +..+.++++....
T Consensus 12 ~~~fd~f~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~-------~~~~~y~~~~~~~----- 79 (229)
T PRK06893 12 DETLDNFYADNNLLLLDSLRKNFIDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLN-------QRTAIYIPLSKSQ----- 79 (229)
T ss_pred cccccccccCChHHHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc-------CCCeEEeeHHHhh-----
Confidence 45788888766522 222222222223346899999999999999999987543 3455555543211
Q ss_pred cccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCCCeEEE-EecCchhHhhhhhcChHHH
Q 002012 343 RGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRGELRCI-GATTLNEYRNYIEKDPALE 421 (982)
Q Consensus 343 ~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g~i~vI-~at~~~~~~~~~~~d~al~ 421 (982)
.....+++.+.. .-+|+|||++.+.+.. .....+.+++....+++...+| ++++.+.. +-...|.+.
T Consensus 80 -----~~~~~~~~~~~~---~dlLilDDi~~~~~~~--~~~~~l~~l~n~~~~~~~~illits~~~p~~--l~~~~~~L~ 147 (229)
T PRK06893 80 -----YFSPAVLENLEQ---QDLVCLDDLQAVIGNE--EWELAIFDLFNRIKEQGKTLLLISADCSPHA--LSIKLPDLA 147 (229)
T ss_pred -----hhhHHHHhhccc---CCEEEEeChhhhcCCh--HHHHHHHHHHHHHHHcCCcEEEEeCCCChHH--ccccchhHH
Confidence 111233333332 2399999999985322 1122344555555566655444 44444441 223458999
Q ss_pred hccc---eEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhh
Q 002012 422 RRFQ---QVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRY 471 (982)
Q Consensus 422 rRf~---~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~ 471 (982)
+||. .+.+..|+.+++.+||+..... .++.++++++.+++..+.|-
T Consensus 148 sRl~~g~~~~l~~pd~e~~~~iL~~~a~~----~~l~l~~~v~~~L~~~~~~d 196 (229)
T PRK06893 148 SRLTWGEIYQLNDLTDEQKIIVLQRNAYQ----RGIELSDEVANFLLKRLDRD 196 (229)
T ss_pred HHHhcCCeeeCCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHhccCC
Confidence 9985 8889999999999999877765 58999999999999987653
No 215
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.48 E-value=9.4e-13 Score=161.95 Aligned_cols=176 Identities=16% Similarity=0.260 Sum_probs=126.8
Q ss_pred CcccchHHHHHHHHHhcc------CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEeccccccc----
Q 002012 270 PVIGRDDEIRRCIQILSR------RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAG---- 339 (982)
Q Consensus 270 ~liG~~~~i~~l~~~L~~------~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~---- 339 (982)
+..|.++..+++++.|.- .....++|+||||+|||++++.+|+.+ +.+++.++++.....
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l----------~~~~~~i~~~~~~d~~~i~ 392 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT----------GRKYVRMALGGVRDEAEIR 392 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEEcCCCCCHHHhc
Confidence 489999999999876652 234568899999999999999999988 677877776654321
Q ss_pred ---ccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcC-----------------CCe
Q 002012 340 ---TCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGR-----------------GEL 399 (982)
Q Consensus 340 ---~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~-----------------g~i 399 (982)
..|.|....++...+..+.. .. .|+||||+|.+.+..+ .+..+.|+++++. +++
T Consensus 393 g~~~~~~g~~~G~~~~~l~~~~~-~~-~villDEidk~~~~~~----g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v 466 (784)
T PRK10787 393 GHRRTYIGSMPGKLIQKMAKVGV-KN-PLFLLDEIDKMSSDMR----GDPASALLEVLDPEQNVAFSDHYLEVDYDLSDV 466 (784)
T ss_pred cchhccCCCCCcHHHHHHHhcCC-CC-CEEEEEChhhcccccC----CCHHHHHHHHhccccEEEEecccccccccCCce
Confidence 12455555544444433221 22 3899999999975432 2345677777764 678
Q ss_pred EEEEecCchhHhhhhhcChHHHhccceEEecCCCHHHHHHHHHHHHH-HHhhh-----cCCccChHHHHHHHHH
Q 002012 400 RCIGATTLNEYRNYIEKDPALERRFQQVFCDQPSVENTISILRGLRE-RYELH-----HGVKISDSALVSAAVL 467 (982)
Q Consensus 400 ~vI~at~~~~~~~~~~~d~al~rRf~~i~i~~Ps~~e~~~IL~~~~~-~~~~~-----~~v~i~~~~l~~~~~~ 467 (982)
.+|+|+|.. .++|+|++||..|.+..++.++..+|.+..+. +.... ..+.++++++..++..
T Consensus 467 ~~i~TaN~~------~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~ 534 (784)
T PRK10787 467 MFVATSNSM------NIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRY 534 (784)
T ss_pred EEEEcCCCC------CCCHHHhcceeeeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHh
Confidence 889877653 48999999999999999999999999966553 22211 2467899999998864
No 216
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.48 E-value=2.5e-13 Score=155.76 Aligned_cols=206 Identities=23% Similarity=0.333 Sum_probs=131.7
Q ss_pred hcccccchHHHHHHHHHHHHHhcCC----CCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccc
Q 002012 662 HKRVIGQDIAVKSVADAIRRSRAGL----SDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHS 737 (982)
Q Consensus 662 ~~~iiGq~~a~~~l~~~i~~~~~g~----~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~ 737 (982)
+.+|.|.+..++.|.+++......- ...-.+..++||+||||||||++|+++|..+ +.+|+.++++++...
T Consensus 182 ~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el---~~~fi~V~~seL~~k-- 256 (438)
T PTZ00361 182 YADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANET---SATFLRVVGSELIQK-- 256 (438)
T ss_pred HHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhh---CCCEEEEecchhhhh--
Confidence 4678999999999999886432110 0001223359999999999999999999987 667888887776322
Q ss_pred cccccCCCCCccccccCCchhHHHhhCCCeEEEEccccccC-----------HHHHHHHHHhhhcCceecCCCcEEeccc
Q 002012 738 VSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEIEKAH-----------QDVFNILLQLLDDGRITDSQGRTVSFTN 806 (982)
Q Consensus 738 ~~~l~g~~~g~vg~~~~~~l~~~l~~~~~~Vl~lDEidkl~-----------~~~~~~Ll~~le~g~~~d~~g~~~~~~~ 806 (982)
++|... .....++.......++||||||||.+. .+++..++++|..-. |. ....+
T Consensus 257 ---~~Ge~~-----~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ld-----g~-~~~~~ 322 (438)
T PTZ00361 257 ---YLGDGP-----KLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLD-----GF-DSRGD 322 (438)
T ss_pred ---hcchHH-----HHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHh-----hh-cccCC
Confidence 222211 111234555566677899999999763 234555555553200 00 01136
Q ss_pred EEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHH--hccccccccCCCChhHHHHHHHHHHHHHH
Q 002012 807 CVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFL--NRIDEYIVFQPLDSKEISKIVEIQMNRVK 884 (982)
Q Consensus 807 ~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll--~Rid~ii~F~pl~~~~l~~il~~~l~~~~ 884 (982)
+.||+|||.... ++|.++ +|||..|.|++++.++..+|+...+.+
T Consensus 323 V~VI~ATNr~d~-------------------------------LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k-- 369 (438)
T PTZ00361 323 VKVIMATNRIES-------------------------------LDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSK-- 369 (438)
T ss_pred eEEEEecCChHH-------------------------------hhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhc--
Confidence 889999996432 566666 699999999999999999999877654
Q ss_pred HHHHhCCCCccCCHH-HHHHHHhcCCCCCCCchHHHHHHHHHHHHHH
Q 002012 885 DRLKQKKIDLHYTKE-AVTLLGILGFDPNFGARPVKRVIQQLVENEI 930 (982)
Q Consensus 885 ~~~~~~~~~l~i~~~-a~~~L~~~~~~~~~gaR~L~~~i~~~l~~~l 930 (982)
.. ++++ -++.++.. ...+.+..++.++......++
T Consensus 370 -----~~----l~~dvdl~~la~~--t~g~sgAdI~~i~~eA~~~Al 405 (438)
T PTZ00361 370 -----MT----LAEDVDLEEFIMA--KDELSGADIKAICTEAGLLAL 405 (438)
T ss_pred -----CC----CCcCcCHHHHHHh--cCCCCHHHHHHHHHHHHHHHH
Confidence 12 2222 12334432 234556778887777544443
No 217
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.47 E-value=3.5e-13 Score=155.23 Aligned_cols=198 Identities=17% Similarity=0.280 Sum_probs=128.2
Q ss_pred hcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCC------------CceEEE-e
Q 002012 662 HKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTE------------NALVRI-D 728 (982)
Q Consensus 662 ~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~------------~~~v~i-~ 728 (982)
+.+|+||+.+++.|..++...+ -...+||+||||+|||++|+++|+.+++.. .++..+ .
T Consensus 15 ~~eiiGq~~~~~~L~~~~~~~~--------~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~ 86 (397)
T PRK14955 15 FADITAQEHITRTIQNSLRMGR--------VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECES 86 (397)
T ss_pred HhhccChHHHHHHHHHHHHhCC--------cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHH
Confidence 4789999999999988887431 122399999999999999999999996531 111100 0
Q ss_pred ccccccc--cccccccCCCCCccccccCCchhHHHhh----CCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEE
Q 002012 729 MSEYMEK--HSVSRLVGAPPGYVGYEEGGQLTEVVRR----RPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTV 802 (982)
Q Consensus 729 ~s~~~~~--~~~~~l~g~~~g~vg~~~~~~l~~~l~~----~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~ 802 (982)
|..+... ..+..+-| .+..+.++.+.+.+.+.. +++.|+||||+|.++...++.|++.||+..
T Consensus 87 c~~~~~~~~~n~~~~~~--~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~--------- 155 (397)
T PRK14955 87 CRDFDAGTSLNISEFDA--ASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPP--------- 155 (397)
T ss_pred HHHHhcCCCCCeEeecc--cccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCC---------
Confidence 0000000 00001111 011122222233344432 345799999999999999999999999621
Q ss_pred ecccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHHH
Q 002012 803 SFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNR 882 (982)
Q Consensus 803 ~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~ 882 (982)
..++||++++... .+.+++.+|+ .++.|.|++.+++.+.+...++.
T Consensus 156 --~~t~~Il~t~~~~-------------------------------kl~~tl~sR~-~~v~f~~l~~~ei~~~l~~~~~~ 201 (397)
T PRK14955 156 --PHAIFIFATTELH-------------------------------KIPATIASRC-QRFNFKRIPLEEIQQQLQGICEA 201 (397)
T ss_pred --CCeEEEEEeCChH-------------------------------HhHHHHHHHH-HHhhcCCCCHHHHHHHHHHHHHH
Confidence 3577777775321 1456788999 58999999999999888877764
Q ss_pred HHHHHHhCCCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHH
Q 002012 883 VKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQ 924 (982)
Q Consensus 883 ~~~~~~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~ 924 (982)
.+ +.++++++++|+..+ .+ ..|.+.+.+++
T Consensus 202 -------~g--~~i~~~al~~l~~~s-~g--~lr~a~~~L~k 231 (397)
T PRK14955 202 -------EG--ISVDADALQLIGRKA-QG--SMRDAQSILDQ 231 (397)
T ss_pred -------cC--CCCCHHHHHHHHHHc-CC--CHHHHHHHHHH
Confidence 33 779999999998863 22 23555555544
No 218
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.47 E-value=7.3e-13 Score=147.73 Aligned_cols=107 Identities=27% Similarity=0.367 Sum_probs=80.6
Q ss_pred CeEEEEccchhhhhCCCCCc----hhhHHHHHHhhhcC------------CCeEEEEecCchhHhhhhhcChHHHhccc-
Q 002012 363 QIILFIDELHTIIGAGNQSG----AMDASNMLKPMLGR------------GELRCIGATTLNEYRNYIEKDPALERRFQ- 425 (982)
Q Consensus 363 ~~IL~IDEi~~l~~~~~~~~----~~~~~~~L~~~le~------------g~i~vI~at~~~~~~~~~~~d~al~rRf~- 425 (982)
..|+||||||.+...+.+.+ ..-+++-|+++++. .+|.||+++..... +--.+-|.|.-||.
T Consensus 248 ~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~-kp~DlIPEl~GR~Pi 326 (441)
T TIGR00390 248 SGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLA-KPSDLIPELQGRFPI 326 (441)
T ss_pred CCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCC-ChhhccHHHhCccce
Confidence 45999999999986542211 23477889998874 57899998875431 11246799999997
Q ss_pred eEEecCCCHHHHHHHH----HHHHHHHhh---hcC--CccChHHHHHHHHHhhh
Q 002012 426 QVFCDQPSVENTISIL----RGLRERYEL---HHG--VKISDSALVSAAVLADR 470 (982)
Q Consensus 426 ~i~i~~Ps~~e~~~IL----~~~~~~~~~---~~~--v~i~~~~l~~~~~~s~r 470 (982)
.+.+..++.+++..|| ..+..+|.. ..+ +.++++++..+++.+..
T Consensus 327 ~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~ 380 (441)
T TIGR00390 327 RVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYN 380 (441)
T ss_pred EEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHH
Confidence 7888889999999999 567777774 334 56799999999998763
No 219
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.47 E-value=1.4e-12 Score=148.61 Aligned_cols=235 Identities=17% Similarity=0.231 Sum_probs=150.9
Q ss_pred HHHHHHHHHhhhcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEecc
Q 002012 651 REKLVMLEEVLHKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMS 730 (982)
Q Consensus 651 ~~~l~~l~~~l~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s 730 (982)
...+..+.+.+.+.++|++++++.+..++.. + +++||.||||||||++|++|++.+-.. .+|..+.+.
T Consensus 8 ~~~i~~l~~~l~~~i~gre~vI~lll~aala---g--------~hVLL~GpPGTGKT~LAraLa~~~~~~-~~F~~~~~~ 75 (498)
T PRK13531 8 AERISRLSSALEKGLYERSHAIRLCLLAALS---G--------ESVFLLGPPGIAKSLIARRLKFAFQNA-RAFEYLMTR 75 (498)
T ss_pred HHHHHHHHHHHhhhccCcHHHHHHHHHHHcc---C--------CCEEEECCCChhHHHHHHHHHHHhccc-Ccceeeeee
Confidence 4457788899999999999999988777641 1 259999999999999999999987332 255544443
Q ss_pred ccccccccccccCCCCCccccccCCchh----HHHhhCCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEeccc
Q 002012 731 EYMEKHSVSRLVGAPPGYVGYEEGGQLT----EVVRRRPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTN 806 (982)
Q Consensus 731 ~~~~~~~~~~l~g~~~g~vg~~~~~~l~----~~l~~~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~ 806 (982)
-. . ...++|...-+..... +.+. +.+..+ .+||+|||.++++..|+.|+.+|+++.++. .|......-
T Consensus 76 ft-t---p~DLfG~l~i~~~~~~-g~f~r~~~G~L~~A--~lLfLDEI~rasp~~QsaLLeam~Er~~t~-g~~~~~lp~ 147 (498)
T PRK13531 76 FS-T---PEEVFGPLSIQALKDE-GRYQRLTSGYLPEA--EIVFLDEIWKAGPAILNTLLTAINERRFRN-GAHEEKIPM 147 (498)
T ss_pred ec-C---cHHhcCcHHHhhhhhc-CchhhhcCCccccc--cEEeecccccCCHHHHHHHHHHHHhCeEec-CCeEEeCCC
Confidence 11 1 1255664311111001 1111 112122 399999999999999999999999999886 456666655
Q ss_pred EEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCCh-hHHHHHHHHHH-----
Q 002012 807 CVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDS-KEISKIVEIQM----- 880 (982)
Q Consensus 807 ~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~-~~l~~il~~~l----- 880 (982)
-+|+++||.-++ .+.|.+++++||-..|..+|++. ++..+++...-
T Consensus 148 rfiv~ATN~LPE----------------------------~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~~~~~~~ 199 (498)
T PRK13531 148 RLLVTASNELPE----------------------------ADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDN 199 (498)
T ss_pred cEEEEECCCCcc----------------------------cCCchHHhHhhEEEEEECCCCCchHHHHHHHHcccccccC
Confidence 566666674332 12377899999966788888874 55566665421
Q ss_pred ----------HHHHHHHHhCCCCccCCHHHHHHHHhcC-----C--CCCCCchHHHHHHHHHHHHHHHHHHHcCC
Q 002012 881 ----------NRVKDRLKQKKIDLHYTKEAVTLLGILG-----F--DPNFGARPVKRVIQQLVENEIAVAILKGD 938 (982)
Q Consensus 881 ----------~~~~~~~~~~~~~l~i~~~a~~~L~~~~-----~--~~~~gaR~L~~~i~~~l~~~la~~~l~~~ 938 (982)
..+ ..++..-..+.+++++.+++.... . .+..+-|.....+. -+-|.+++.|.
T Consensus 200 ~~~~~~vis~eel-~~lq~~v~~V~v~d~v~eyI~~L~~~lr~~r~~~~~SpR~~~~l~~----~akA~A~l~GR 269 (498)
T PRK13531 200 PVPASLQITDEEY-QQWQKEIGKITLPDHVFELIFQLRQQLDALPNAPYVSDRRWKKAIR----LLQASAFFSGR 269 (498)
T ss_pred CCcccCCCCHHHH-HHHHHHhcceeCCHHHHHHHHHHHHHHhcCCCCCCcCcHHHHHHHH----HHHHHHHHCCC
Confidence 111 122223345788999988876542 1 12245555555444 36667788875
No 220
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.47 E-value=3.5e-13 Score=159.96 Aligned_cols=168 Identities=25% Similarity=0.337 Sum_probs=116.4
Q ss_pred hcccccchHHHHHHHHHHHHHhcCCC---CCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEecccccccccc
Q 002012 662 HKRVIGQDIAVKSVADAIRRSRAGLS---DPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSV 738 (982)
Q Consensus 662 ~~~iiGq~~a~~~l~~~i~~~~~g~~---~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~ 738 (982)
+++|+|+++++..+.+.+...+.... ....+..++||+||||||||++|+++|..+ +.+++.++++++...
T Consensus 54 ~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~~~~--- 127 (495)
T TIGR01241 54 FKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA---GVPFFSISGSDFVEM--- 127 (495)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc---CCCeeeccHHHHHHH---
Confidence 36789999998888877653321100 001222359999999999999999999987 788999988876432
Q ss_pred ccccCCCCCccccccCCchhHHHhhCCCeEEEEccccccCH--------------HHHHHHHHhhhcCceecCCCcEEec
Q 002012 739 SRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEIEKAHQ--------------DVFNILLQLLDDGRITDSQGRTVSF 804 (982)
Q Consensus 739 ~~l~g~~~g~vg~~~~~~l~~~l~~~~~~Vl~lDEidkl~~--------------~~~~~Ll~~le~g~~~d~~g~~~~~ 804 (982)
+.|.. ....+.++..++...++||||||||.+.+ .+++.|+..|+.- . ..
T Consensus 128 --~~g~~-----~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~--~-------~~ 191 (495)
T TIGR01241 128 --FVGVG-----ASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGF--G-------TN 191 (495)
T ss_pred --Hhccc-----HHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccc--c-------CC
Confidence 12211 11113355566666779999999998743 2455666666531 1 11
Q ss_pred ccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHh--ccccccccCCCChhHHHHHHHHHHHH
Q 002012 805 TNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLN--RIDEYIVFQPLDSKEISKIVEIQMNR 882 (982)
Q Consensus 805 ~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~--Rid~ii~F~pl~~~~l~~il~~~l~~ 882 (982)
.+++||+|||.... ++|++++ |||..|.|++++.++..+|++..+..
T Consensus 192 ~~v~vI~aTn~~~~-------------------------------ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~ 240 (495)
T TIGR01241 192 TGVIVIAATNRPDV-------------------------------LDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKN 240 (495)
T ss_pred CCeEEEEecCChhh-------------------------------cCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhc
Confidence 35889999997542 6677774 99999999999999999999887754
No 221
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.47 E-value=5.4e-13 Score=154.90 Aligned_cols=195 Identities=25% Similarity=0.355 Sum_probs=124.1
Q ss_pred cccccchHHHHHHHHHHHHH--------hcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCC-------CCceEEE
Q 002012 663 KRVIGQDIAVKSVADAIRRS--------RAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNT-------ENALVRI 727 (982)
Q Consensus 663 ~~iiGq~~a~~~l~~~i~~~--------~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~-------~~~~v~i 727 (982)
.+|.|.+..++.+.+++... ..|+. |..++||+||||||||++|+++|+.+... ...|+.+
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~----~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v 257 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLK----PPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNI 257 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCC----CCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEec
Confidence 56778888888888887532 12322 22349999999999999999999988221 1112222
Q ss_pred eccccccccccccccCCCCCccccccC--CchhHHHhh----CCCeEEEEccccccCH------------HHHHHHHHhh
Q 002012 728 DMSEYMEKHSVSRLVGAPPGYVGYEEG--GQLTEVVRR----RPYSVVLFDEIEKAHQ------------DVFNILLQLL 789 (982)
Q Consensus 728 ~~s~~~~~~~~~~l~g~~~g~vg~~~~--~~l~~~l~~----~~~~Vl~lDEidkl~~------------~~~~~Ll~~l 789 (982)
..+++. + .|+|..+. +.+++.++. ..++||||||+|.+.. .+.+.|+..|
T Consensus 258 ~~~eLl---------~---kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~L 325 (512)
T TIGR03689 258 KGPELL---------N---KYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSEL 325 (512)
T ss_pred cchhhc---------c---cccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHh
Confidence 222221 1 13333221 234444443 2568999999998732 2456777777
Q ss_pred hcCceecCCCcEEecccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHh--ccccccccCCC
Q 002012 790 DDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLN--RIDEYIVFQPL 867 (982)
Q Consensus 790 e~g~~~d~~g~~~~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~--Rid~ii~F~pl 867 (982)
+.-. ...+++||+|||.... ++|++++ |||..|.|+++
T Consensus 326 Dgl~---------~~~~ViVI~ATN~~d~-------------------------------LDpALlRpGRfD~~I~~~~P 365 (512)
T TIGR03689 326 DGVE---------SLDNVIVIGASNREDM-------------------------------IDPAILRPGRLDVKIRIERP 365 (512)
T ss_pred cccc---------cCCceEEEeccCChhh-------------------------------CCHhhcCccccceEEEeCCC
Confidence 6311 1246899999997542 7888886 99999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhCCCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHH
Q 002012 868 DSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEI 930 (982)
Q Consensus 868 ~~~~l~~il~~~l~~~~~~~~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~l~~~l 930 (982)
+.++..+|+..++.. . +.+++++. .. ..+.+..+..++++.+...+
T Consensus 366 d~e~r~~Il~~~l~~--------~--l~l~~~l~----~~---~g~~~a~~~al~~~av~~~~ 411 (512)
T TIGR03689 366 DAEAAADIFSKYLTD--------S--LPLDADLA----EF---DGDREATAAALIQRAVDHLY 411 (512)
T ss_pred CHHHHHHHHHHHhhc--------c--CCchHHHH----Hh---cCCCHHHHHHHHHHHHHHHh
Confidence 999999999988753 2 33444432 21 12334566777776554444
No 222
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=5.5e-13 Score=152.81 Aligned_cols=181 Identities=23% Similarity=0.348 Sum_probs=135.0
Q ss_pred CCcccchHHHHHHHHHhcc----C--CCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEeccccccc---
Q 002012 269 DPVIGRDDEIRRCIQILSR----R--TKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAG--- 339 (982)
Q Consensus 269 ~~liG~~~~i~~l~~~L~~----~--~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~--- 339 (982)
++--|.++..+|+++.+.- + .+.-++|+||||||||++++.||+.+ |..++.+..+.+..-
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~AL----------nRkFfRfSvGG~tDvAeI 480 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARAL----------NRKFFRFSVGGMTDVAEI 480 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHh----------CCceEEEeccccccHHhh
Confidence 4567888899999997642 1 23346789999999999999999999 899999987666531
Q ss_pred ----ccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhc-----------------CCC
Q 002012 340 ----TCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLG-----------------RGE 398 (982)
Q Consensus 340 ----~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le-----------------~g~ 398 (982)
..|.|....++-+.++.+.- ..| +++|||||.+...- .| |....|+.+|+ -.+
T Consensus 481 kGHRRTYVGAMPGkiIq~LK~v~t-~NP-liLiDEvDKlG~g~--qG--DPasALLElLDPEQNanFlDHYLdVp~DLSk 554 (906)
T KOG2004|consen 481 KGHRRTYVGAMPGKIIQCLKKVKT-ENP-LILIDEVDKLGSGH--QG--DPASALLELLDPEQNANFLDHYLDVPVDLSK 554 (906)
T ss_pred cccceeeeccCChHHHHHHHhhCC-CCc-eEEeehhhhhCCCC--CC--ChHHHHHHhcChhhccchhhhccccccchhh
Confidence 34778888877777777764 334 89999999996322 22 22234555553 237
Q ss_pred eEEEEecCchhHhhhhhcChHHHhccceEEecCCCHHHHHHHHHHHH-HHHhhhc-----CCccChHHHHHHHHHhhh
Q 002012 399 LRCIGATTLNEYRNYIEKDPALERRFQQVFCDQPSVENTISILRGLR-ERYELHH-----GVKISDSALVSAAVLADR 470 (982)
Q Consensus 399 i~vI~at~~~~~~~~~~~d~al~rRf~~i~i~~Ps~~e~~~IL~~~~-~~~~~~~-----~v~i~~~~l~~~~~~s~r 470 (982)
|.||||.|.-+ .++++|+.|++.|.+.-+..+|-.+|.+.++ .+....+ .+.++++++..++...-|
T Consensus 555 VLFicTAN~id-----tIP~pLlDRMEvIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI~~Ycr 627 (906)
T KOG2004|consen 555 VLFICTANVID-----TIPPPLLDRMEVIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALIERYCR 627 (906)
T ss_pred eEEEEeccccc-----cCChhhhhhhheeeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHHHHHHHHH
Confidence 89999999988 7999999999999999999999999986543 3333333 478899988887776433
No 223
>CHL00176 ftsH cell division protein; Validated
Probab=99.46 E-value=6.6e-13 Score=159.32 Aligned_cols=198 Identities=22% Similarity=0.334 Sum_probs=129.4
Q ss_pred hcccccchHHHHHHHHHHHHHhcCCC----CCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccc
Q 002012 662 HKRVIGQDIAVKSVADAIRRSRAGLS----DPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHS 737 (982)
Q Consensus 662 ~~~iiGq~~a~~~l~~~i~~~~~g~~----~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~ 737 (982)
++++.|.++++..+.+.+...+.... ....|. ++||+||||||||++|+++|..+ +.+++.++++++.+..
T Consensus 182 f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~-gVLL~GPpGTGKT~LAralA~e~---~~p~i~is~s~f~~~~- 256 (638)
T CHL00176 182 FRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPK-GVLLVGPPGTGKTLLAKAIAGEA---EVPFFSISGSEFVEMF- 256 (638)
T ss_pred HHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCc-eEEEECCCCCCHHHHHHHHHHHh---CCCeeeccHHHHHHHh-
Confidence 36688888888777776643322111 112233 59999999999999999999987 7899999998874321
Q ss_pred cccccCCCCCccccccCCchhHHHhhCCCeEEEEccccccC-----------HH---HHHHHHHhhhcCceecCCCcEEe
Q 002012 738 VSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEIEKAH-----------QD---VFNILLQLLDDGRITDSQGRTVS 803 (982)
Q Consensus 738 ~~~l~g~~~g~vg~~~~~~l~~~l~~~~~~Vl~lDEidkl~-----------~~---~~~~Ll~~le~g~~~d~~g~~~~ 803 (982)
.|. +....+.++...+...++||||||||.+. .. +++.|+..|+. . . .
T Consensus 257 ----~g~-----~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg-~-~-------~ 318 (638)
T CHL00176 257 ----VGV-----GAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDG-F-K-------G 318 (638)
T ss_pred ----hhh-----hHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhcc-c-c-------C
Confidence 121 11112335556666778999999999883 23 34445544442 1 0 1
Q ss_pred cccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHH--hccccccccCCCChhHHHHHHHHHHH
Q 002012 804 FTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFL--NRIDEYIVFQPLDSKEISKIVEIQMN 881 (982)
Q Consensus 804 ~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll--~Rid~ii~F~pl~~~~l~~il~~~l~ 881 (982)
..++++|++||.... ++|+++ +|||..|.|++++.++..+|++..++
T Consensus 319 ~~~ViVIaaTN~~~~-------------------------------LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~ 367 (638)
T CHL00176 319 NKGVIVIAATNRVDI-------------------------------LDAALLRPGRFDRQITVSLPDREGRLDILKVHAR 367 (638)
T ss_pred CCCeeEEEecCchHh-------------------------------hhhhhhccccCceEEEECCCCHHHHHHHHHHHHh
Confidence 135889999986432 455665 58999999999999999999998876
Q ss_pred HHHHHHHhCCCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHHH
Q 002012 882 RVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQL 925 (982)
Q Consensus 882 ~~~~~~~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~ 925 (982)
. .. ..++..+..|+.. .+.|..++|++++...
T Consensus 368 ~-------~~---~~~d~~l~~lA~~--t~G~sgaDL~~lvneA 399 (638)
T CHL00176 368 N-------KK---LSPDVSLELIARR--TPGFSGADLANLLNEA 399 (638)
T ss_pred h-------cc---cchhHHHHHHHhc--CCCCCHHHHHHHHHHH
Confidence 5 11 1223344556553 2335567777777754
No 224
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.46 E-value=8.3e-13 Score=156.74 Aligned_cols=199 Identities=20% Similarity=0.311 Sum_probs=130.9
Q ss_pred hhcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCC----ceEEE-eccccccc
Q 002012 661 LHKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTEN----ALVRI-DMSEYMEK 735 (982)
Q Consensus 661 l~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~----~~v~i-~~s~~~~~ 735 (982)
.+.+|+||+.++..+..++...+ ....+||+||+|+|||++|+++|+.+.+... ++..+ +|..+...
T Consensus 14 ~f~diiGqe~iv~~L~~~i~~~~--------i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~ 85 (563)
T PRK06647 14 DFNSLEGQDFVVETLKHSIESNK--------IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDND 85 (563)
T ss_pred CHHHccCcHHHHHHHHHHHHcCC--------CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcC
Confidence 35789999999999999887432 1224999999999999999999999965321 22111 11111100
Q ss_pred c--ccccccCCCCCccccccCCchhHHHh----hCCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEE
Q 002012 736 H--SVSRLVGAPPGYVGYEEGGQLTEVVR----RRPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVV 809 (982)
Q Consensus 736 ~--~~~~l~g~~~g~vg~~~~~~l~~~l~----~~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~ii 809 (982)
. .+..+-|.. ..+.+..+.+.+.+. .+++.|+||||+|.++...++.|++.||+. ..+++|
T Consensus 86 ~~~dv~~idgas--~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEep-----------p~~~vf 152 (563)
T PRK06647 86 NSLDVIEIDGAS--NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEP-----------PPYIVF 152 (563)
T ss_pred CCCCeEEecCcc--cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccC-----------CCCEEE
Confidence 0 000111110 111111122222223 245679999999999999999999999962 136888
Q ss_pred EEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHHHHHHHHHh
Q 002012 810 IMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQ 889 (982)
Q Consensus 810 I~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~~~~~~~ 889 (982)
|++++... .+.+++.+|| ..+.|.+++.+++.+.+...+..
T Consensus 153 I~~tte~~-------------------------------kL~~tI~SRc-~~~~f~~l~~~el~~~L~~i~~~------- 193 (563)
T PRK06647 153 IFATTEVH-------------------------------KLPATIKSRC-QHFNFRLLSLEKIYNMLKKVCLE------- 193 (563)
T ss_pred EEecCChH-------------------------------HhHHHHHHhc-eEEEecCCCHHHHHHHHHHHHHH-------
Confidence 88875421 1557889999 58999999999998888776654
Q ss_pred CCCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHH
Q 002012 890 KKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQ 924 (982)
Q Consensus 890 ~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~ 924 (982)
.+ +.++++++++|+... .+ ..|.+.+.+++
T Consensus 194 eg--i~id~eAl~lLa~~s-~G--dlR~alslLdk 223 (563)
T PRK06647 194 DQ--IKYEDEALKWIAYKS-TG--SVRDAYTLFDQ 223 (563)
T ss_pred cC--CCCCHHHHHHHHHHc-CC--CHHHHHHHHHH
Confidence 44 678999999999862 22 34666666655
No 225
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.45 E-value=2.3e-12 Score=147.71 Aligned_cols=212 Identities=20% Similarity=0.286 Sum_probs=142.4
Q ss_pred CCcccchHHHHHHHHHhcc----CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccc------
Q 002012 269 DPVIGRDDEIRRCIQILSR----RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVA------ 338 (982)
Q Consensus 269 ~~liG~~~~i~~l~~~L~~----~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~------ 338 (982)
+.++||+++++.+...+.. ....+++|+||||||||++++.+++.+.... +..-....++++++.....
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~-~~~~~~~~~v~in~~~~~~~~~~~~ 93 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAA-EDRDVRVVTVYVNCQILDTLYQVLV 93 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHh-hccCCceEEEEEECCCCCCHHHHHH
Confidence 4589999999999888754 4556899999999999999999998874321 0000125778888754331
Q ss_pred ---------cc--cccc-cHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhh-----cCCCeEE
Q 002012 339 ---------GT--CYRG-DFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPML-----GRGELRC 401 (982)
Q Consensus 339 ---------~~--~~~g-~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~l-----e~g~i~v 401 (982)
+. ...| ...+.+..+++.+...+.+.||+|||+|.+.+.. .++...|.... ....+.+
T Consensus 94 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~-----~~~L~~l~~~~~~~~~~~~~v~l 168 (365)
T TIGR02928 94 ELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDD-----DDLLYQLSRARSNGDLDNAKVGV 168 (365)
T ss_pred HHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCC-----cHHHHhHhccccccCCCCCeEEE
Confidence 10 0111 2233345555555544667899999999997322 23333344431 2367899
Q ss_pred EEecCchhHhhhhhcChHHHhccc--eEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCCcc
Q 002012 402 IGATTLNEYRNYIEKDPALERRFQ--QVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLPD 479 (982)
Q Consensus 402 I~at~~~~~~~~~~~d~al~rRf~--~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~p~ 479 (982)
|+++|...+.. .+++.+.+||. .+.+++++.+++..|++...+.- ..+..++++++..++..+.+. ...++
T Consensus 169 I~i~n~~~~~~--~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~--~~~~~~~~~~l~~i~~~~~~~---~Gd~R 241 (365)
T TIGR02928 169 IGISNDLKFRE--NLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKA--FYDGVLDDGVIPLCAALAAQE---HGDAR 241 (365)
T ss_pred EEEECCcchHh--hcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhh--ccCCCCChhHHHHHHHHHHHh---cCCHH
Confidence 99998876532 47899999994 78999999999999998765421 123458888888877765432 23467
Q ss_pred hhhHHHHHHHHHhh
Q 002012 480 KAIDLVDEAAAKLK 493 (982)
Q Consensus 480 ~a~~lld~a~~~~~ 493 (982)
.++++++.|+..+.
T Consensus 242 ~al~~l~~a~~~a~ 255 (365)
T TIGR02928 242 KAIDLLRVAGEIAE 255 (365)
T ss_pred HHHHHHHHHHHHHH
Confidence 88889888876543
No 226
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.45 E-value=1.5e-12 Score=148.71 Aligned_cols=186 Identities=24% Similarity=0.319 Sum_probs=126.2
Q ss_pred cccchHHHHHHHHHhcc----------------CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecc
Q 002012 271 VIGRDDEIRRCIQILSR----------------RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMA 334 (982)
Q Consensus 271 liG~~~~i~~l~~~L~~----------------~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~ 334 (982)
+|||++.++.+...+.. ....|+||+||||||||++|+.+|..+ +.+++.++++
T Consensus 73 ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l----------~~pf~~id~~ 142 (412)
T PRK05342 73 VIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL----------DVPFAIADAT 142 (412)
T ss_pred eeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh----------CCCceecchh
Confidence 89999988877655421 135789999999999999999999988 7889999988
Q ss_pred cccccccccccH-HHHHHHHHHH----HHhcCCCeEEEEccchhhhhCCCCC------chhhHHHHHHhhhcCC------
Q 002012 335 SLVAGTCYRGDF-EKRLKAVLKE----VTKSNGQIILFIDELHTIIGAGNQS------GAMDASNMLKPMLGRG------ 397 (982)
Q Consensus 335 ~l~~~~~~~g~~-e~~l~~l~~~----~~~~~~~~IL~IDEi~~l~~~~~~~------~~~~~~~~L~~~le~g------ 397 (982)
.+.. ..|.|.. +..+..++.. +.. ..+.||||||||.+...+.+. +...+++.|+++|+..
T Consensus 143 ~l~~-~gyvG~d~e~~l~~l~~~~~~~~~~-a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~ 220 (412)
T PRK05342 143 TLTE-AGYVGEDVENILLKLLQAADYDVEK-AQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPP 220 (412)
T ss_pred hccc-CCcccchHHHHHHHHHHhccccHHH-cCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCC
Confidence 7653 3477753 3334444432 222 345699999999998653221 1235788898888622
Q ss_pred ---------CeEEEEecCc--------h-------------------------------hHhh--------hhhcChHHH
Q 002012 398 ---------ELRCIGATTL--------N-------------------------------EYRN--------YIEKDPALE 421 (982)
Q Consensus 398 ---------~i~vI~at~~--------~-------------------------------~~~~--------~~~~d~al~ 421 (982)
..++|.|+|. . .+.+ .+.+.|+|.
T Consensus 221 ~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEfl 300 (412)
T PRK05342 221 QGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFI 300 (412)
T ss_pred CCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHh
Confidence 1123444333 1 0000 112479999
Q ss_pred hccc-eEEecCCCHHHHHHHHH----HHHHHHhh---h--cCCccChHHHHHHHHHh
Q 002012 422 RRFQ-QVFCDQPSVENTISILR----GLRERYEL---H--HGVKISDSALVSAAVLA 468 (982)
Q Consensus 422 rRf~-~i~i~~Ps~~e~~~IL~----~~~~~~~~---~--~~v~i~~~~l~~~~~~s 468 (982)
.|++ .+.+.+.+.+++..|+. .+.++|.. . ..+.++++++.++++.+
T Consensus 301 gRld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~ 357 (412)
T PRK05342 301 GRLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKA 357 (412)
T ss_pred CCCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhC
Confidence 9998 66677779999999996 46665553 2 34678999999999864
No 227
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=7.8e-13 Score=156.25 Aligned_cols=165 Identities=28% Similarity=0.429 Sum_probs=125.7
Q ss_pred hhcccccchHHHHHHHHHHHHH-------hcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccc
Q 002012 661 LHKRVIGQDIAVKSVADAIRRS-------RAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYM 733 (982)
Q Consensus 661 l~~~iiGq~~a~~~l~~~i~~~-------~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~ 733 (982)
.++++-|.++|+..|.+.+.-. +.|. .-|. .+||+||||||||.+|+++|... +.||+.+..++|.
T Consensus 309 ~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGA---KiPk-GvLL~GPPGTGKTLLAKAiAGEA---gVPF~svSGSEFv 381 (774)
T KOG0731|consen 309 KFKDVAGVDEAKEELMEFVKFLKNPEQYQELGA---KIPK-GVLLVGPPGTGKTLLAKAIAGEA---GVPFFSVSGSEFV 381 (774)
T ss_pred ccccccCcHHHHHHHHHHHHHhcCHHHHHHcCC---cCcC-ceEEECCCCCcHHHHHHHHhccc---CCceeeechHHHH
Confidence 4688999999999998888432 2232 2333 49999999999999999999986 8999999999997
Q ss_pred cccccccccCCCCCccccccCCchhHHHhhCCCeEEEEccccccCH---------------HHHHHHHHhhhcCceecCC
Q 002012 734 EKHSVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEIEKAHQ---------------DVFNILLQLLDDGRITDSQ 798 (982)
Q Consensus 734 ~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~~~~~Vl~lDEidkl~~---------------~~~~~Ll~~le~g~~~d~~ 798 (982)
+. +.| +|..-.+.++...+...++|||+||||.... ..+|.||--|| |..+
T Consensus 382 E~-----~~g-----~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emD-gf~~--- 447 (774)
T KOG0731|consen 382 EM-----FVG-----VGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMD-GFET--- 447 (774)
T ss_pred HH-----hcc-----cchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhc-CCcC---
Confidence 54 222 2233345688888888899999999997632 25667776666 2211
Q ss_pred CcEEecccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHH--hccccccccCCCChhHHHHHH
Q 002012 799 GRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFL--NRIDEYIVFQPLDSKEISKIV 876 (982)
Q Consensus 799 g~~~~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll--~Rid~ii~F~pl~~~~l~~il 876 (982)
. .++|++++||.... ++++|+ +|||..|....++.....+|+
T Consensus 448 ----~-~~vi~~a~tnr~d~-------------------------------ld~allrpGRfdr~i~i~~p~~~~r~~i~ 491 (774)
T KOG0731|consen 448 ----S-KGVIVLAATNRPDI-------------------------------LDPALLRPGRFDRQIQIDLPDVKGRASIL 491 (774)
T ss_pred ----C-CcEEEEeccCCccc-------------------------------cCHHhcCCCccccceeccCCchhhhHHHH
Confidence 1 46899999996532 455665 899999999999999999999
Q ss_pred HHHHHH
Q 002012 877 EIQMNR 882 (982)
Q Consensus 877 ~~~l~~ 882 (982)
+.++..
T Consensus 492 ~~h~~~ 497 (774)
T KOG0731|consen 492 KVHLRK 497 (774)
T ss_pred HHHhhc
Confidence 988875
No 228
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.45 E-value=6.5e-13 Score=151.68 Aligned_cols=210 Identities=21% Similarity=0.284 Sum_probs=135.6
Q ss_pred HhhhcccccchHHHHHHHHHHHHHhcCCC----CCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEecccccc
Q 002012 659 EVLHKRVIGQDIAVKSVADAIRRSRAGLS----DPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYME 734 (982)
Q Consensus 659 ~~l~~~iiGq~~a~~~l~~~i~~~~~g~~----~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~ 734 (982)
...+.++.|.+..++.|.+++........ ..-.+..++||+||||||||++|+++|+.+ +.+++.+.++++..
T Consensus 118 ~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l---~~~~~~v~~~~l~~ 194 (364)
T TIGR01242 118 NVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET---NATFIRVVGSELVR 194 (364)
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhC---CCCEEecchHHHHH
Confidence 34457899999999999998864321100 001222359999999999999999999987 56777777665432
Q ss_pred ccccccccCCCCCccccccCCchhHHHhhCCCeEEEEcccccc-----------CHHHHHHHHHhhhcCceecCCCcEEe
Q 002012 735 KHSVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEIEKA-----------HQDVFNILLQLLDDGRITDSQGRTVS 803 (982)
Q Consensus 735 ~~~~~~l~g~~~g~vg~~~~~~l~~~l~~~~~~Vl~lDEidkl-----------~~~~~~~Ll~~le~g~~~d~~g~~~~ 803 (982)
..+|.... ....++...+...++||||||+|.+ ++.++..+.+++..-.-.+ .
T Consensus 195 -----~~~g~~~~-----~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~------~ 258 (364)
T TIGR01242 195 -----KYIGEGAR-----LVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFD------P 258 (364)
T ss_pred -----HhhhHHHH-----HHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCC------C
Confidence 12222111 1123445555566789999999987 3456666766664311000 1
Q ss_pred cccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHH--hccccccccCCCChhHHHHHHHHHHH
Q 002012 804 FTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFL--NRIDEYIVFQPLDSKEISKIVEIQMN 881 (982)
Q Consensus 804 ~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll--~Rid~ii~F~pl~~~~l~~il~~~l~ 881 (982)
..+++||+|||.... +++.++ +|||..|.|++++.++..+|+...+.
T Consensus 259 ~~~v~vI~ttn~~~~-------------------------------ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~ 307 (364)
T TIGR01242 259 RGNVKVIAATNRPDI-------------------------------LDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTR 307 (364)
T ss_pred CCCEEEEEecCChhh-------------------------------CChhhcCcccCceEEEeCCcCHHHHHHHHHHHHh
Confidence 246889999996532 556666 59999999999999999999976654
Q ss_pred HHHHHHHhCCCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHH
Q 002012 882 RVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEI 930 (982)
Q Consensus 882 ~~~~~~~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~l~~~l 930 (982)
. ....-.++ .+.|+.. ...|.+++|+.++......++
T Consensus 308 ~-------~~l~~~~~---~~~la~~--t~g~sg~dl~~l~~~A~~~a~ 344 (364)
T TIGR01242 308 K-------MKLAEDVD---LEAIAKM--TEGASGADLKAICTEAGMFAI 344 (364)
T ss_pred c-------CCCCccCC---HHHHHHH--cCCCCHHHHHHHHHHHHHHHH
Confidence 3 11111223 3445553 245677899988887655554
No 229
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=7.3e-13 Score=158.89 Aligned_cols=201 Identities=18% Similarity=0.312 Sum_probs=130.5
Q ss_pred hhcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCC------CceEEEecccccc
Q 002012 661 LHKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTE------NALVRIDMSEYME 734 (982)
Q Consensus 661 l~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~------~~~v~i~~s~~~~ 734 (982)
.+.+++||+.++..|..++...+. ..++||+||+|+|||++|+++|+.+++.. .++-.++......
T Consensus 14 ~f~~liGq~~i~~~L~~~l~~~rl--------~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~ 85 (620)
T PRK14948 14 RFDELVGQEAIATTLKNALISNRI--------APAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIA 85 (620)
T ss_pred cHhhccChHHHHHHHHHHHHcCCC--------CceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHh
Confidence 347899999999999888874321 12599999999999999999999996532 1221111100010
Q ss_pred ccccccccCCC-CCccccccCCchhHHHhh----CCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEE
Q 002012 735 KHSVSRLVGAP-PGYVGYEEGGQLTEVVRR----RPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVV 809 (982)
Q Consensus 735 ~~~~~~l~g~~-~g~vg~~~~~~l~~~l~~----~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~ii 809 (982)
...+..++... ....+.+..+.+.+.+.. +.+.|+||||+|.|+.+.++.|++.||+- ..+++|
T Consensus 86 ~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEeP-----------p~~tvf 154 (620)
T PRK14948 86 AGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEP-----------PPRVVF 154 (620)
T ss_pred cCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcC-----------CcCeEE
Confidence 01111111100 111222222333333333 34679999999999999999999999962 135888
Q ss_pred EEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHHHHHHHHHh
Q 002012 810 IMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQ 889 (982)
Q Consensus 810 I~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~~~~~~~ 889 (982)
|++|+.... +.+++.+|| ..+.|.+++.+++...+...+.+
T Consensus 155 IL~t~~~~~-------------------------------llpTIrSRc-~~~~f~~l~~~ei~~~L~~ia~k------- 195 (620)
T PRK14948 155 VLATTDPQR-------------------------------VLPTIISRC-QRFDFRRIPLEAMVQHLSEIAEK------- 195 (620)
T ss_pred EEEeCChhh-------------------------------hhHHHHhhe-eEEEecCCCHHHHHHHHHHHHHH-------
Confidence 888864321 557899999 68999999998888777666553
Q ss_pred CCCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHH
Q 002012 890 KKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQ 924 (982)
Q Consensus 890 ~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~ 924 (982)
.+ +.+++++++.|+... .+ +.|...+.+++
T Consensus 196 eg--i~is~~al~~La~~s-~G--~lr~A~~lLek 225 (620)
T PRK14948 196 ES--IEIEPEALTLVAQRS-QG--GLRDAESLLDQ 225 (620)
T ss_pred hC--CCCCHHHHHHHHHHc-CC--CHHHHHHHHHH
Confidence 33 668899998888763 22 23555555554
No 230
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.44 E-value=3e-12 Score=143.74 Aligned_cols=176 Identities=18% Similarity=0.243 Sum_probs=128.1
Q ss_pred cccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEecccccccccccccc
Q 002012 663 KRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRLV 742 (982)
Q Consensus 663 ~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l~ 742 (982)
.+++||+++++.+...+... ..| ..+||+||||+|||++|+++++.+ +.+++.+++++ .....+.
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~-------~~~-~~lll~G~~G~GKT~la~~l~~~~---~~~~~~i~~~~-~~~~~i~--- 85 (316)
T PHA02544 21 DECILPAADKETFKSIVKKG-------RIP-NMLLHSPSPGTGKTTVAKALCNEV---GAEVLFVNGSD-CRIDFVR--- 85 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcC-------CCC-eEEEeeCcCCCCHHHHHHHHHHHh---CccceEeccCc-ccHHHHH---
Confidence 67899999999888887621 112 236669999999999999999987 45677777765 1100000
Q ss_pred CCCCCccccccCCchhHHHhh----CCCeEEEEcccccc-CHHHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCCh
Q 002012 743 GAPPGYVGYEEGGQLTEVVRR----RPYSVVLFDEIEKA-HQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGS 817 (982)
Q Consensus 743 g~~~g~vg~~~~~~l~~~l~~----~~~~Vl~lDEidkl-~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~ 817 (982)
..+.+.... .+++||||||+|.+ ..+.++.|..++++.. .++.||+|+|...
T Consensus 86 ------------~~l~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~-----------~~~~~Ilt~n~~~ 142 (316)
T PHA02544 86 ------------NRLTRFASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYS-----------KNCSFIITANNKN 142 (316)
T ss_pred ------------HHHHHHHHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcC-----------CCceEEEEcCChh
Confidence 001111111 35679999999999 7778888888888621 3578999998532
Q ss_pred HHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHHHHHHHHHhCCCCccCC
Q 002012 818 HYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYT 897 (982)
Q Consensus 818 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~~~~~~~~~~~l~i~ 897 (982)
. +.+++.+|| ..+.|++++.++...++...+..+...+...+ +.++
T Consensus 143 ~-------------------------------l~~~l~sR~-~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~--~~i~ 188 (316)
T PHA02544 143 G-------------------------------IIEPLRSRC-RVIDFGVPTKEEQIEMMKQMIVRCKGILEAEG--VEVD 188 (316)
T ss_pred h-------------------------------chHHHHhhc-eEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcC--CCCC
Confidence 1 567899999 58899999999999998887777766665566 6679
Q ss_pred HHHHHHHHhcCCC
Q 002012 898 KEAVTLLGILGFD 910 (982)
Q Consensus 898 ~~a~~~L~~~~~~ 910 (982)
++++..|+..++.
T Consensus 189 ~~al~~l~~~~~~ 201 (316)
T PHA02544 189 MKVLAALVKKNFP 201 (316)
T ss_pred HHHHHHHHHhcCC
Confidence 9999999987664
No 231
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.44 E-value=1.9e-12 Score=143.93 Aligned_cols=234 Identities=18% Similarity=0.222 Sum_probs=142.6
Q ss_pred hhcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCC----CceEEEeccc--cc-
Q 002012 661 LHKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTE----NALVRIDMSE--YM- 733 (982)
Q Consensus 661 l~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~----~~~v~i~~s~--~~- 733 (982)
.+..|+||++++..|..++.. ..++++||.||+|||||++|+.+++.+...+ .+|. .+... ..
T Consensus 15 pf~~ivGq~~~k~al~~~~~~---------p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~-~~p~~p~~~~ 84 (350)
T CHL00081 15 PFTAIVGQEEMKLALILNVID---------PKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFN-SHPSDPELMS 84 (350)
T ss_pred CHHHHhChHHHHHHHHHhccC---------CCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCC-CCCCChhhhc
Confidence 357899999999888776652 2335699999999999999999999984211 2222 00000 00
Q ss_pred --------------------------cccccccccCCCCCccccccCC--chhHHHhhCCCeEEEEccccccCHHHHHHH
Q 002012 734 --------------------------EKHSVSRLVGAPPGYVGYEEGG--QLTEVVRRRPYSVVLFDEIEKAHQDVFNIL 785 (982)
Q Consensus 734 --------------------------~~~~~~~l~g~~~g~vg~~~~~--~l~~~l~~~~~~Vl~lDEidkl~~~~~~~L 785 (982)
..-...+++|.-+-......+. .-.+.+.++.+++||+|||+.+++..|+.|
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~~~Q~~L 164 (350)
T CHL00081 85 DEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDIL 164 (350)
T ss_pred hhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCHHHHHHH
Confidence 0000112222110000000000 012345567788999999999999999999
Q ss_pred HHhhhcCceecC-CCcEEec-ccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccc
Q 002012 786 LQLLDDGRITDS-QGRTVSF-TNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIV 863 (982)
Q Consensus 786 l~~le~g~~~d~-~g~~~~~-~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~ 863 (982)
+++|++|..+-. .|..... .++++|+|.|+.. +.|+++|++||...|.
T Consensus 165 Leam~e~~~~ier~G~s~~~p~rfiviaT~np~e------------------------------g~l~~~LldRf~l~i~ 214 (350)
T CHL00081 165 LDSAASGWNTVEREGISIRHPARFVLVGSGNPEE------------------------------GELRPQLLDRFGMHAE 214 (350)
T ss_pred HHHHHhCCeEEeeCCeeeecCCCEEEEeccCccc------------------------------CCCCHHHHHHhCceee
Confidence 999999765432 2333322 5778888888642 2389999999998888
Q ss_pred cCCCCh-hHHHHHHHHHHHH----------H-------HHH---HHhCCCCccCCHHHHHHHHhcCCCCC-CCchHHHHH
Q 002012 864 FQPLDS-KEISKIVEIQMNR----------V-------KDR---LKQKKIDLHYTKEAVTLLGILGFDPN-FGARPVKRV 921 (982)
Q Consensus 864 F~pl~~-~~l~~il~~~l~~----------~-------~~~---~~~~~~~l~i~~~a~~~L~~~~~~~~-~gaR~L~~~ 921 (982)
+.+++. +.-.+|+...... + .+. +++.-..+.+++++++++++.+...+ -|-|.-...
T Consensus 215 l~~~~~~~~e~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l 294 (350)
T CHL00081 215 IRTVKDPELRVKIVEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVT 294 (350)
T ss_pred cCCCCChHHHHHHHHhhhccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHH
Confidence 888874 6667777664220 0 111 22333458899999999887543221 244444333
Q ss_pred HHHHHHHHHHHHHHcCC
Q 002012 922 IQQLVENEIAVAILKGD 938 (982)
Q Consensus 922 i~~~l~~~la~~~l~~~ 938 (982)
+..+-|.+++.|.
T Consensus 295 ----~raArA~Aal~GR 307 (350)
T CHL00081 295 ----NRAAKALAAFEGR 307 (350)
T ss_pred ----HHHHHHHHHHcCC
Confidence 3446666777764
No 232
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.44 E-value=3.4e-12 Score=143.35 Aligned_cols=202 Identities=16% Similarity=0.134 Sum_probs=137.0
Q ss_pred hhcCCCCCcccchHHHHHHHHHhccCCCCC-cEEeCCCCCcHHHHHHHHHHHhhcCCC----CCCCC----CC-------
Q 002012 263 ARSGKLDPVIGRDDEIRRCIQILSRRTKNN-PVIIGEPGVGKTAIAEGLAQRIVRGDV----PETLQ----NR------- 326 (982)
Q Consensus 263 ~~~~~l~~liG~~~~i~~l~~~L~~~~~~~-iLL~GppGvGKT~la~~la~~l~~~~~----p~~l~----~~------- 326 (982)
..|..++.++|+++.++.+...+..+..+| +||+||+|+|||++|+.+|+.+.+... |..+. .+
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i~ 96 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQIA 96 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHHH
Confidence 467788999999999999999998877666 788899999999999999999977321 21111 11
Q ss_pred -----eEEEEecc-cccccccccccHHHHHHHHHHHHHh---cCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcC-
Q 002012 327 -----KLISLDMA-SLVAGTCYRGDFEKRLKAVLKEVTK---SNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGR- 396 (982)
Q Consensus 327 -----~v~~l~~~-~l~~~~~~~g~~e~~l~~l~~~~~~---~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~- 396 (982)
.++.+... ....+.....-..+.++.+.+.+.. .++..|++|||+|.|. ...+|.|+..+++
T Consensus 97 ~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~--------~~aanaLLk~LEEp 168 (351)
T PRK09112 97 QGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMN--------RNAANAILKTLEEP 168 (351)
T ss_pred cCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcC--------HHHHHHHHHHHhcC
Confidence 11222110 0000000011112233444433332 2456799999999996 5667888888884
Q ss_pred -CCeEEEEecCchhHhhhhhcChHHHhccceEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccC
Q 002012 397 -GELRCIGATTLNEYRNYIEKDPALERRFQQVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITER 475 (982)
Q Consensus 397 -g~i~vI~at~~~~~~~~~~~d~al~rRf~~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~ 475 (982)
.+..+|..|+.+. .+.|.+++||..+.+.+|+.+++..+|...... ..++++.+..++.+|.
T Consensus 169 p~~~~fiLit~~~~-----~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~------~~~~~~~~~~i~~~s~------ 231 (351)
T PRK09112 169 PARALFILISHSSG-----RLLPTIRSRCQPISLKPLDDDELKKALSHLGSS------QGSDGEITEALLQRSK------ 231 (351)
T ss_pred CCCceEEEEECChh-----hccHHHHhhccEEEecCCCHHHHHHHHHHhhcc------cCCCHHHHHHHHHHcC------
Confidence 4566666676665 567999999999999999999999998763211 1267888888888876
Q ss_pred CCcchhhHHHHHHH
Q 002012 476 FLPDKAIDLVDEAA 489 (982)
Q Consensus 476 ~~p~~a~~lld~a~ 489 (982)
..|..++.++....
T Consensus 232 G~pr~Al~ll~~~~ 245 (351)
T PRK09112 232 GSVRKALLLLNYGG 245 (351)
T ss_pred CCHHHHHHHHhcCc
Confidence 45688888875443
No 233
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.44 E-value=1.4e-11 Score=127.31 Aligned_cols=207 Identities=17% Similarity=0.257 Sum_probs=157.0
Q ss_pred hHHHhhcCCCCCcccchHHHHHHHHHhccCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCC---------CCCCeEE
Q 002012 259 LTELARSGKLDPVIGRDDEIRRCIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPET---------LQNRKLI 329 (982)
Q Consensus 259 l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~---------l~~~~v~ 329 (982)
|.++|||..++.++++++.-..+.........+|+++|||+|.||-|.+.+|.+.+..-+++.- -.+.+ +
T Consensus 3 Wvdkyrpksl~~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kk-l 81 (351)
T KOG2035|consen 3 WVDKYRPKSLDELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKK-L 81 (351)
T ss_pred chhhcCcchhhhcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCce-E
Confidence 6789999999999999988888888777777899999999999999999999999876544421 01111 1
Q ss_pred EEe-ccc----ccccccccccHHH-HHHHHHHHHHhc--------CCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhc
Q 002012 330 SLD-MAS----LVAGTCYRGDFEK-RLKAVLKEVTKS--------NGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLG 395 (982)
Q Consensus 330 ~l~-~~~----l~~~~~~~g~~e~-~l~~l~~~~~~~--------~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le 395 (982)
+++ +++ -+.+ ...|.... .+.++++++.+. ....+++|-|+|.|. .|++..|+..||
T Consensus 82 EistvsS~yHlEitP-SDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT--------~dAQ~aLRRTME 152 (351)
T KOG2035|consen 82 EISTVSSNYHLEITP-SDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELT--------RDAQHALRRTME 152 (351)
T ss_pred EEEEecccceEEeCh-hhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhh--------HHHHHHHHHHHH
Confidence 111 000 0111 12233222 345666665532 234599999999997 889999999998
Q ss_pred --CCCeEEEEecCchhHhhhhhcChHHHhccceEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhc
Q 002012 396 --RGELRCIGATTLNEYRNYIEKDPALERRFQQVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYIT 473 (982)
Q Consensus 396 --~g~i~vI~at~~~~~~~~~~~d~al~rRf~~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~ 473 (982)
.+.+++|..+|... .+-+++++||-.|.++.|+.+|+..++..++++ .++.++++.+..+++-|+|..
T Consensus 153 kYs~~~RlIl~cns~S-----riIepIrSRCl~iRvpaps~eeI~~vl~~v~~k----E~l~lp~~~l~rIa~kS~~nL- 222 (351)
T KOG2035|consen 153 KYSSNCRLILVCNSTS-----RIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKK----EGLQLPKELLKRIAEKSNRNL- 222 (351)
T ss_pred HHhcCceEEEEecCcc-----cchhHHhhheeEEeCCCCCHHHHHHHHHHHHHH----hcccCcHHHHHHHHHHhcccH-
Confidence 57899999999877 778999999999999999999999999999888 688999999999999988765
Q ss_pred cCCCcchhhHHHHHHHH
Q 002012 474 ERFLPDKAIDLVDEAAA 490 (982)
Q Consensus 474 ~~~~p~~a~~lld~a~~ 490 (982)
+.|+-.++.++.
T Consensus 223 -----RrAllmlE~~~~ 234 (351)
T KOG2035|consen 223 -----RRALLMLEAVRV 234 (351)
T ss_pred -----HHHHHHHHHHHh
Confidence 556655554443
No 234
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.43 E-value=1.4e-12 Score=156.53 Aligned_cols=199 Identities=21% Similarity=0.360 Sum_probs=131.7
Q ss_pred hhcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCC-----CceEEE-ecccccc
Q 002012 661 LHKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTE-----NALVRI-DMSEYME 734 (982)
Q Consensus 661 l~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~-----~~~v~i-~~s~~~~ 734 (982)
.+++|+||+.+++.|..++...+ -...+||+||+|+|||++|+++|+.+.+.. .++-.+ +|..+..
T Consensus 15 ~f~~viGq~~~~~~L~~~i~~~~--------l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~ 86 (614)
T PRK14971 15 TFESVVGQEALTTTLKNAIATNK--------LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNE 86 (614)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC--------CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhc
Confidence 35789999999999999887421 122389999999999999999999986421 111111 1111111
Q ss_pred cc--ccccccCCCCCccccccCCchhHHHhh----CCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEE
Q 002012 735 KH--SVSRLVGAPPGYVGYEEGGQLTEVVRR----RPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCV 808 (982)
Q Consensus 735 ~~--~~~~l~g~~~g~vg~~~~~~l~~~l~~----~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~i 808 (982)
.. .+..+-+ .+..+.++...+.+.+.. +++.|++|||+|.++...++.|+++||+- ..+++
T Consensus 87 ~~~~n~~~ld~--~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEep-----------p~~ti 153 (614)
T PRK14971 87 QRSYNIHELDA--ASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEP-----------PSYAI 153 (614)
T ss_pred CCCCceEEecc--cccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCC-----------CCCeE
Confidence 10 0111111 111111222222222333 33679999999999999999999999972 13588
Q ss_pred EEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHHHHHHHHH
Q 002012 809 VIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLK 888 (982)
Q Consensus 809 iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~~~~~~ 888 (982)
||++|+... .+.+.+.+|| .++.|.|++.+++...+...+.+
T Consensus 154 fIL~tt~~~-------------------------------kIl~tI~SRc-~iv~f~~ls~~ei~~~L~~ia~~------ 195 (614)
T PRK14971 154 FILATTEKH-------------------------------KILPTILSRC-QIFDFNRIQVADIVNHLQYVASK------ 195 (614)
T ss_pred EEEEeCCch-------------------------------hchHHHHhhh-heeecCCCCHHHHHHHHHHHHHH------
Confidence 888886322 2667899999 68999999999999888877665
Q ss_pred hCCCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHH
Q 002012 889 QKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQ 924 (982)
Q Consensus 889 ~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~ 924 (982)
.| +.++++++++|+..+ .+ +.|.+.+.+++
T Consensus 196 -eg--i~i~~~al~~La~~s-~g--dlr~al~~Lek 225 (614)
T PRK14971 196 -EG--ITAEPEALNVIAQKA-DG--GMRDALSIFDQ 225 (614)
T ss_pred -cC--CCCCHHHHHHHHHHc-CC--CHHHHHHHHHH
Confidence 45 789999999999863 22 34555555554
No 235
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=3.6e-13 Score=139.69 Aligned_cols=208 Identities=17% Similarity=0.261 Sum_probs=136.8
Q ss_pred hhcccccchHHHHHHHHHHHHHhc---CCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccc
Q 002012 661 LHKRVIGQDIAVKSVADAIRRSRA---GLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHS 737 (982)
Q Consensus 661 l~~~iiGq~~a~~~l~~~i~~~~~---g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~ 737 (982)
-|.+|-|.+.|+++|.+++..... -....++|...+||+|||||||+++|+++|... +..|..+..++++.+
T Consensus 131 kWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA---nSTFFSvSSSDLvSK-- 205 (439)
T KOG0739|consen 131 KWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSSSDLVSK-- 205 (439)
T ss_pred chhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc---CCceEEeehHHHHHH--
Confidence 367899999999999998842211 111235666669999999999999999999987 677888888777543
Q ss_pred cccccCCCCCccccccCCchhHHHhhCCCeEEEEccccccCH-----------HHHHHHHHhhhcCceecCCCcEEeccc
Q 002012 738 VSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEIEKAHQ-----------DVFNILLQLLDDGRITDSQGRTVSFTN 806 (982)
Q Consensus 738 ~~~l~g~~~g~vg~~~~~~l~~~l~~~~~~Vl~lDEidkl~~-----------~~~~~Ll~~le~g~~~d~~g~~~~~~~ 806 (982)
..|..... ...|++..+++.++||||||||.+.. .+-..||-.|. |.=.| -..
T Consensus 206 ---WmGESEkL-----VknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMq-GVG~d-------~~g 269 (439)
T KOG0739|consen 206 ---WMGESEKL-----VKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQ-GVGND-------NDG 269 (439)
T ss_pred ---HhccHHHH-----HHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhh-ccccC-------CCc
Confidence 33332211 14689999999999999999998742 13333333333 22222 234
Q ss_pred EEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHHHHHHH
Q 002012 807 CVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDR 886 (982)
Q Consensus 807 ~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~~~~ 886 (982)
+.++.+||.+.. ++.++..||+..|+++-+........++..+-.
T Consensus 270 vLVLgATNiPw~-------------------------------LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~---- 314 (439)
T KOG0739|consen 270 VLVLGATNIPWV-------------------------------LDSAIRRRFEKRIYIPLPEAHARARMFKLHLGD---- 314 (439)
T ss_pred eEEEecCCCchh-------------------------------HHHHHHHHhhcceeccCCcHHHhhhhheeccCC----
Confidence 778889998753 456777888776666655555554554444332
Q ss_pred HHhCCCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHH
Q 002012 887 LKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIA 931 (982)
Q Consensus 887 ~~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~l~~~la 931 (982)
..-.+++.-+..|... ...|.+.++.-+++..++.++-
T Consensus 315 -----tp~~LT~~d~~eL~~k--TeGySGsDisivVrDalmePvR 352 (439)
T KOG0739|consen 315 -----TPHVLTEQDFKELARK--TEGYSGSDISIVVRDALMEPVR 352 (439)
T ss_pred -----CccccchhhHHHHHhh--cCCCCcCceEEEehhhhhhhHH
Confidence 3356778888888875 2234445566666666666653
No 236
>PRK04195 replication factor C large subunit; Provisional
Probab=99.42 E-value=1.7e-12 Score=153.39 Aligned_cols=174 Identities=22% Similarity=0.344 Sum_probs=126.8
Q ss_pred cccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEecccccccccccccc
Q 002012 663 KRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRLV 742 (982)
Q Consensus 663 ~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l~ 742 (982)
.+++||+.++..+...+..+..|. +..++||+||||||||++|+++|+.+ +..++.+|++++.....+..++
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g~-----~~~~lLL~GppG~GKTtla~ala~el---~~~~ielnasd~r~~~~i~~~i 85 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKGK-----PKKALLLYGPPGVGKTSLAHALANDY---GWEVIELNASDQRTADVIERVA 85 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCC-----CCCeEEEECCCCCCHHHHHHHHHHHc---CCCEEEEcccccccHHHHHHHH
Confidence 569999999999999998765332 23359999999999999999999998 6778888888764333333333
Q ss_pred CCCCCccccccCCchhHHHhhCCCeEEEEccccccCH----HHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCChH
Q 002012 743 GAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEIEKAHQ----DVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSH 818 (982)
Q Consensus 743 g~~~g~vg~~~~~~l~~~l~~~~~~Vl~lDEidkl~~----~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~ 818 (982)
+....+ ..++ ..+..||+|||+|.++. ..++.|+.+++.. ++.||+++|....
T Consensus 86 ~~~~~~------~sl~----~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~-------------~~~iIli~n~~~~ 142 (482)
T PRK04195 86 GEAATS------GSLF----GARRKLILLDEVDGIHGNEDRGGARAILELIKKA-------------KQPIILTANDPYD 142 (482)
T ss_pred HHhhcc------Cccc----CCCCeEEEEecCcccccccchhHHHHHHHHHHcC-------------CCCEEEeccCccc
Confidence 221110 0111 12467999999999976 6789999998852 3457778875432
Q ss_pred HHHHhhhhcccchHHHHHHHHHHHHHHHHhhcCh-HHHhccccccccCCCChhHHHHHHHHHHHHHHHHHHhCCCCccCC
Q 002012 819 YILETLQSVQDSKEAVYEVMKKQVVELARQTFRP-EFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYT 897 (982)
Q Consensus 819 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p-~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~~~~~~~~~~~l~i~ 897 (982)
+.+ .+.+|+ ..|.|+|++.+++..++...+.. .+ +.++
T Consensus 143 -------------------------------~~~k~Lrsr~-~~I~f~~~~~~~i~~~L~~i~~~-------eg--i~i~ 181 (482)
T PRK04195 143 -------------------------------PSLRELRNAC-LMIEFKRLSTRSIVPVLKRICRK-------EG--IECD 181 (482)
T ss_pred -------------------------------cchhhHhccc-eEEEecCCCHHHHHHHHHHHHHH-------cC--CCCC
Confidence 233 566777 68999999999999998877764 44 6789
Q ss_pred HHHHHHHHhcC
Q 002012 898 KEAVTLLGILG 908 (982)
Q Consensus 898 ~~a~~~L~~~~ 908 (982)
+++++.|++.+
T Consensus 182 ~eaL~~Ia~~s 192 (482)
T PRK04195 182 DEALKEIAERS 192 (482)
T ss_pred HHHHHHHHHHc
Confidence 99999999863
No 237
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.42 E-value=1.7e-12 Score=156.33 Aligned_cols=200 Identities=20% Similarity=0.321 Sum_probs=129.7
Q ss_pred hhcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCC-----ceEEEe-cccccc
Q 002012 661 LHKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTEN-----ALVRID-MSEYME 734 (982)
Q Consensus 661 l~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~-----~~v~i~-~s~~~~ 734 (982)
.+.+|+||+.+++.|..++...+. ...+||+||+|+|||++|+.+++.+.+... ++-.++ |..+..
T Consensus 14 ~~~eiiGq~~~~~~L~~~i~~~~i--------~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~ 85 (585)
T PRK14950 14 TFAELVGQEHVVQTLRNAIAEGRV--------AHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAE 85 (585)
T ss_pred CHHHhcCCHHHHHHHHHHHHhCCC--------ceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhc
Confidence 357899999999999888874321 123799999999999999999999854221 111110 011110
Q ss_pred ccccccccC-CCCCccccccCCchhHHHhh----CCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEE
Q 002012 735 KHSVSRLVG-APPGYVGYEEGGQLTEVVRR----RPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVV 809 (982)
Q Consensus 735 ~~~~~~l~g-~~~g~vg~~~~~~l~~~l~~----~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~ii 809 (982)
. ....++- ......+.+..+.+.+.+.. ..+.||||||+|.++.+.++.|++.||+.. .+++|
T Consensus 86 ~-~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp-----------~~tv~ 153 (585)
T PRK14950 86 G-SAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPP-----------PHAIF 153 (585)
T ss_pred C-CCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCC-----------CCeEE
Confidence 0 0000100 00112222222333333333 346799999999999999999999999732 35788
Q ss_pred EEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHHHHHHHHHh
Q 002012 810 IMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQ 889 (982)
Q Consensus 810 I~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~~~~~~~ 889 (982)
|++++.... +.+.+.+|+ ..+.|.+++..++..++...+.+
T Consensus 154 Il~t~~~~k-------------------------------ll~tI~SR~-~~i~f~~l~~~el~~~L~~~a~~------- 194 (585)
T PRK14950 154 ILATTEVHK-------------------------------VPATILSRC-QRFDFHRHSVADMAAHLRKIAAA------- 194 (585)
T ss_pred EEEeCChhh-------------------------------hhHHHHhcc-ceeeCCCCCHHHHHHHHHHHHHH-------
Confidence 887753211 445788999 58999999999998888776654
Q ss_pred CCCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHH
Q 002012 890 KKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQ 924 (982)
Q Consensus 890 ~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~ 924 (982)
.+ +.++++++++|+..+ .+ ..|.+.+.+++
T Consensus 195 eg--l~i~~eal~~La~~s-~G--dlr~al~~Lek 224 (585)
T PRK14950 195 EG--INLEPGALEAIARAA-TG--SMRDAENLLQQ 224 (585)
T ss_pred cC--CCCCHHHHHHHHHHc-CC--CHHHHHHHHHH
Confidence 34 678999999998763 22 34666666665
No 238
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.41 E-value=4.7e-12 Score=140.64 Aligned_cols=234 Identities=16% Similarity=0.207 Sum_probs=140.2
Q ss_pred hcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCC----CC--ceEEEe----ccc
Q 002012 662 HKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNT----EN--ALVRID----MSE 731 (982)
Q Consensus 662 ~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~----~~--~~v~i~----~s~ 731 (982)
+..|+||+++++.+.-++.. ...+++||.|+||||||++|++++..+..- +. .+.++. +.+
T Consensus 7 f~~i~Gq~~~~~~l~~~~~~---------~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~~~ 77 (334)
T PRK13407 7 FSAIVGQEEMKQAMVLTAID---------PGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWAH 77 (334)
T ss_pred HHHhCCHHHHHHHHHHHHhc---------cCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCccccc
Confidence 46799999999887654321 112469999999999999999999998310 11 111111 100
Q ss_pred ccc------------c---cccccccCCCCCccccccCC--chhHHHhhCCCeEEEEccccccCHHHHHHHHHhhhcCce
Q 002012 732 YME------------K---HSVSRLVGAPPGYVGYEEGG--QLTEVVRRRPYSVVLFDEIEKAHQDVFNILLQLLDDGRI 794 (982)
Q Consensus 732 ~~~------------~---~~~~~l~g~~~g~vg~~~~~--~l~~~l~~~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~ 794 (982)
... . .....++|...-...-..++ .-.+.+.++.+++||+|||+.+++.+|+.|++.|++|.+
T Consensus 78 ~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~~~q~~Lle~mee~~v 157 (334)
T PRK13407 78 VSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLEDHIVDLLLDVAQSGEN 157 (334)
T ss_pred ccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCHHHHHHHHHHHHcCCe
Confidence 000 0 00112333210000000011 112344556678999999999999999999999999985
Q ss_pred ec-CCCcEEec-ccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCCh-hH
Q 002012 795 TD-SQGRTVSF-TNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDS-KE 871 (982)
Q Consensus 795 ~d-~~g~~~~~-~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~-~~ 871 (982)
+- ..|....+ .++++|+|+|+.. ..+++++++||...|...++.. ++
T Consensus 158 ~v~r~G~~~~~p~rfiviAt~NP~e------------------------------~~l~~aLldRF~~~v~v~~~~~~~e 207 (334)
T PRK13407 158 VVEREGLSIRHPARFVLVGSGNPEE------------------------------GELRPQLLDRFGLSVEVRSPRDVET 207 (334)
T ss_pred EEEECCeEEecCCCEEEEecCCccc------------------------------CCCCHHHHhhcceEEEcCCCCcHHH
Confidence 32 22333333 6788888888642 1278899999987777777666 66
Q ss_pred HHHHHHHHHHH------H--------------HHHHHhCCCCccCCHHHHHHHHhcCCCCC-CCchHHHHHHHHHHHHHH
Q 002012 872 ISKIVEIQMNR------V--------------KDRLKQKKIDLHYTKEAVTLLGILGFDPN-FGARPVKRVIQQLVENEI 930 (982)
Q Consensus 872 l~~il~~~l~~------~--------------~~~~~~~~~~l~i~~~a~~~L~~~~~~~~-~gaR~L~~~i~~~l~~~l 930 (982)
..+++...... + -..++..-..+.+++++++++++.+.... -|-|+ .+. ++..+-
T Consensus 208 ~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra---~i~-l~~aA~ 283 (334)
T PRK13407 208 RVEVIRRRDAYDADHDAFMAKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIALGSDGLRG---ELT-LLRAAR 283 (334)
T ss_pred HHHHHHHhhcccccchhhhccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCchH---HHH-HHHHHH
Confidence 66777653211 1 01122233457899999999887532221 24343 333 455577
Q ss_pred HHHHHcCC
Q 002012 931 AVAILKGD 938 (982)
Q Consensus 931 a~~~l~~~ 938 (982)
+.+++++.
T Consensus 284 a~A~l~Gr 291 (334)
T PRK13407 284 ALAAFEGA 291 (334)
T ss_pred HHHHHcCC
Confidence 77888774
No 239
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.41 E-value=9.5e-13 Score=145.90 Aligned_cols=165 Identities=22% Similarity=0.407 Sum_probs=114.0
Q ss_pred hhcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEE-eccccccccccc
Q 002012 661 LHKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRI-DMSEYMEKHSVS 739 (982)
Q Consensus 661 l~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i-~~s~~~~~~~~~ 739 (982)
.+.+|+||+.+++.+..++...+. | ..+||+||+|+||+++|.++|+.+++.+ ++-.+ .|. .....+.
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~rl-------~-ha~Lf~G~~G~Gk~~~A~~~a~~llc~~-~c~~c~~~~--~~~~~hP 70 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQNRI-------A-PAYLFAGPEGVGRKLAALCFIEGLLSQG-SPSKNIRRR--LEEGNHP 70 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhCCC-------C-ceEEEECCCCCCHHHHHHHHHHHHcCCC-CCCCcHhcc--cccCCCC
Confidence 357899999999999999975422 2 2499999999999999999999997654 11000 010 1111111
Q ss_pred ccc---------CCC---------------CCccccccCCchhHHHhh----CCCeEEEEccccccCHHHHHHHHHhhhc
Q 002012 740 RLV---------GAP---------------PGYVGYEEGGQLTEVVRR----RPYSVVLFDEIEKAHQDVFNILLQLLDD 791 (982)
Q Consensus 740 ~l~---------g~~---------------~g~vg~~~~~~l~~~l~~----~~~~Vl~lDEidkl~~~~~~~Ll~~le~ 791 (982)
++. |.. .+.++.++.+.+.+.+.. +++.|++||++|+|+...+|+||+.||+
T Consensus 71 Dl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEE 150 (314)
T PRK07399 71 DLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEE 150 (314)
T ss_pred CEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhC
Confidence 111 110 011111222344444543 4467999999999999999999999997
Q ss_pred CceecCCCcEEecccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhH
Q 002012 792 GRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKE 871 (982)
Q Consensus 792 g~~~d~~g~~~~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~ 871 (982)
- .+++||++|+.... +.|++.+|| .+++|.|++.++
T Consensus 151 P------------p~~~fILi~~~~~~-------------------------------Ll~TI~SRc-q~i~f~~l~~~~ 186 (314)
T PRK07399 151 P------------GNGTLILIAPSPES-------------------------------LLPTIVSRC-QIIPFYRLSDEQ 186 (314)
T ss_pred C------------CCCeEEEEECChHh-------------------------------CcHHHHhhc-eEEecCCCCHHH
Confidence 1 25678888774322 778999999 799999999999
Q ss_pred HHHHHHHHH
Q 002012 872 ISKIVEIQM 880 (982)
Q Consensus 872 l~~il~~~l 880 (982)
+.+++....
T Consensus 187 ~~~~L~~~~ 195 (314)
T PRK07399 187 LEQVLKRLG 195 (314)
T ss_pred HHHHHHHhh
Confidence 988888653
No 240
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.41 E-value=2.6e-12 Score=146.79 Aligned_cols=200 Identities=21% Similarity=0.345 Sum_probs=128.3
Q ss_pred hhcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccc-----
Q 002012 661 LHKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEK----- 735 (982)
Q Consensus 661 l~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~----- 735 (982)
.+.+++||+.+++.+...+... +....+||+||||+|||++|+.+++.+.+.+..- .-.|..+...
T Consensus 12 ~~~~iig~~~~~~~l~~~~~~~--------~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~-~~~c~~c~~c~~~~~ 82 (355)
T TIGR02397 12 TFEDVIGQEHIVQTLKNAIKNG--------RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPD-GEPCNECESCKEINS 82 (355)
T ss_pred cHhhccCcHHHHHHHHHHHHcC--------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-CCCCCCCHHHHHHhc
Confidence 3578999999999999888632 2223489999999999999999999986432110 0011111000
Q ss_pred cccccccC-CCCCccccccCCchhHHHhhC----CCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEE
Q 002012 736 HSVSRLVG-APPGYVGYEEGGQLTEVVRRR----PYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVI 810 (982)
Q Consensus 736 ~~~~~l~g-~~~g~vg~~~~~~l~~~l~~~----~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI 810 (982)
.....++. .+.+..+....+.+.+.+... ++.||+|||+|.++...++.|++.+++. ..+++||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~-----------~~~~~lI 151 (355)
T TIGR02397 83 GSSLDVIEIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEP-----------PEHVVFI 151 (355)
T ss_pred CCCCCEEEeeccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCC-----------ccceeEE
Confidence 00000000 000011111112233433333 3469999999999999999999999862 1357888
Q ss_pred EecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHHHHHHHHHhC
Q 002012 811 MTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQK 890 (982)
Q Consensus 811 ~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~~~~~~~~ 890 (982)
++++.... +.+.+.+|+ ..+.|+|++.+++.+++...+++ .
T Consensus 152 l~~~~~~~-------------------------------l~~~l~sr~-~~~~~~~~~~~~l~~~l~~~~~~-------~ 192 (355)
T TIGR02397 152 LATTEPHK-------------------------------IPATILSRC-QRFDFKRIPLEDIVERLKKILDK-------E 192 (355)
T ss_pred EEeCCHHH-------------------------------HHHHHHhhe-eEEEcCCCCHHHHHHHHHHHHHH-------c
Confidence 88764221 445788898 58999999999999999888765 3
Q ss_pred CCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHH
Q 002012 891 KIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQ 924 (982)
Q Consensus 891 ~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~ 924 (982)
+ +.+++++++.|+... .+ ..|.+.+.+++
T Consensus 193 g--~~i~~~a~~~l~~~~-~g--~~~~a~~~lek 221 (355)
T TIGR02397 193 G--IKIEDEALELIARAA-DG--SLRDALSLLDQ 221 (355)
T ss_pred C--CCCCHHHHHHHHHHc-CC--ChHHHHHHHHH
Confidence 4 678999999998863 22 23555555554
No 241
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.41 E-value=2.7e-12 Score=136.84 Aligned_cols=162 Identities=15% Similarity=0.239 Sum_probs=116.7
Q ss_pred eEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccccccccCCCCCccccccCCchhHHHhhCCCeEEEEccc
Q 002012 695 SFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEI 774 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~~~~~Vl~lDEi 774 (982)
+++|+||+|||||++|+.+++.+...+.+++.++|+.+.... . .+.+.+.. .++|+|||+
T Consensus 40 ~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~--~----------------~~~~~~~~--~~lLvIDdi 99 (226)
T TIGR03420 40 FLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQAD--P----------------EVLEGLEQ--ADLVCLDDV 99 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhH--H----------------HHHhhccc--CCEEEEeCh
Confidence 599999999999999999999986666788899998874321 0 01222222 359999999
Q ss_pred cccCH--HHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcCh
Q 002012 775 EKAHQ--DVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRP 852 (982)
Q Consensus 775 dkl~~--~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p 852 (982)
+.++. ..++.|..+++... + .+..+|+|++...... ....+
T Consensus 100 ~~l~~~~~~~~~L~~~l~~~~--~--------~~~~iIits~~~~~~~---------------------------~~~~~ 142 (226)
T TIGR03420 100 EAIAGQPEWQEALFHLYNRVR--E--------AGGRLLIAGRAAPAQL---------------------------PLRLP 142 (226)
T ss_pred hhhcCChHHHHHHHHHHHHHH--H--------cCCeEEEECCCChHHC---------------------------CcccH
Confidence 99987 44888888876421 0 1235777877543211 01225
Q ss_pred HHHhccc--cccccCCCChhHHHHHHHHHHHHHHHHHHhCCCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHHH
Q 002012 853 EFLNRID--EYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQL 925 (982)
Q Consensus 853 ~ll~Rid--~ii~F~pl~~~~l~~il~~~l~~~~~~~~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~ 925 (982)
.+.+|+. ..|.++|++.+++..++...+.+ .+ +.++++++++|+.+ |++|+ |.|++++++.
T Consensus 143 ~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~-------~~--~~~~~~~l~~L~~~-~~gn~--r~L~~~l~~~ 205 (226)
T TIGR03420 143 DLRTRLAWGLVFQLPPLSDEEKIAALQSRAAR-------RG--LQLPDEVADYLLRH-GSRDM--GSLMALLDAL 205 (226)
T ss_pred HHHHHHhcCeeEecCCCCHHHHHHHHHHHHHH-------cC--CCCCHHHHHHHHHh-ccCCH--HHHHHHHHHH
Confidence 7777874 57899999999998888665432 33 67999999999995 88766 8999999883
No 242
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.41 E-value=2.9e-11 Score=140.15 Aligned_cols=209 Identities=18% Similarity=0.222 Sum_probs=141.9
Q ss_pred CCcccchHHHHHHHHHhcc----CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccc------
Q 002012 269 DPVIGRDDEIRRCIQILSR----RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVA------ 338 (982)
Q Consensus 269 ~~liG~~~~i~~l~~~L~~----~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~------ 338 (982)
+.++||+++++.+...+.. ....+++|+||||+|||++++.+++.+.... .+..++++++.....
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~-----~~~~~v~in~~~~~~~~~~~~ 104 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIA-----VKVVYVYINCQIDRTRYAIFS 104 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhc-----CCcEEEEEECCcCCCHHHHHH
Confidence 5589999999998887743 3456899999999999999999999885432 256788888754321
Q ss_pred -------c--ccccc-cHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhc---CCCeEEEEec
Q 002012 339 -------G--TCYRG-DFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLG---RGELRCIGAT 405 (982)
Q Consensus 339 -------~--~~~~g-~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le---~g~i~vI~at 405 (982)
+ ....| ...+.+..+.+.+...+.+.||+|||+|.+.... + .+....|...++ ..++.+|+++
T Consensus 105 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~---~-~~~l~~l~~~~~~~~~~~v~vI~i~ 180 (394)
T PRK00411 105 EIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKE---G-NDVLYSLLRAHEEYPGARIGVIGIS 180 (394)
T ss_pred HHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccC---C-chHHHHHHHhhhccCCCeEEEEEEE
Confidence 0 01112 2334444455555544566899999999997211 1 223333333332 2378889998
Q ss_pred CchhHhhhhhcChHHHhccc--eEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCCcchhhH
Q 002012 406 TLNEYRNYIEKDPALERRFQ--QVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLPDKAID 483 (982)
Q Consensus 406 ~~~~~~~~~~~d~al~rRf~--~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~p~~a~~ 483 (982)
+...... .+++.+.+||. .|.+++++.+++..||+..... ......+++++++.++..+.+. ..-...+++
T Consensus 181 ~~~~~~~--~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~--~~~~~~~~~~~l~~i~~~~~~~---~Gd~r~a~~ 253 (394)
T PRK00411 181 SDLTFLY--ILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEE--GFYPGVVDDEVLDLIADLTARE---HGDARVAID 253 (394)
T ss_pred CCcchhh--hcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHh--hcccCCCCHhHHHHHHHHHHHh---cCcHHHHHH
Confidence 8766433 36899999884 7889999999999999765542 1224468999999999887542 223477888
Q ss_pred HHHHHHHHhh
Q 002012 484 LVDEAAAKLK 493 (982)
Q Consensus 484 lld~a~~~~~ 493 (982)
++..|+..+.
T Consensus 254 ll~~a~~~a~ 263 (394)
T PRK00411 254 LLRRAGLIAE 263 (394)
T ss_pred HHHHHHHHHH
Confidence 8887776544
No 243
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.41 E-value=2.7e-12 Score=152.81 Aligned_cols=223 Identities=12% Similarity=0.071 Sum_probs=142.7
Q ss_pred hhhHHHhhcCCCCCcccchHHHHHHHHHhccCCC-----CCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCC--CCeEE
Q 002012 257 NDLTELARSGKLDPVIGRDDEIRRCIQILSRRTK-----NNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQ--NRKLI 329 (982)
Q Consensus 257 ~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~-----~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~--~~~v~ 329 (982)
.+|.++++|..+++++|+++.++.+..++..... .-++|+||||+||||+++.+|..+... +-+... ++...
T Consensus 72 ~pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~-~~Ew~npv~~~~~ 150 (637)
T TIGR00602 72 EPWVEKYKPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELGIQ-VQEWSNPTLPDFQ 150 (637)
T ss_pred CchHHHhCCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhH-HHHHhhhhhhccc
Confidence 5799999999999999999998888877755322 228899999999999999999887211 000000 00000
Q ss_pred EEe---cccccccccccccHHHHHHHHHHHHHh---------cCCCeEEEEccchhhhhCCCCCchhhHHHHHH-hhhcC
Q 002012 330 SLD---MASLVAGTCYRGDFEKRLKAVLKEVTK---------SNGQIILFIDELHTIIGAGNQSGAMDASNMLK-PMLGR 396 (982)
Q Consensus 330 ~l~---~~~l~~~~~~~g~~e~~l~~l~~~~~~---------~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~-~~le~ 396 (982)
.-+ ...+...........+.++.++..+.. .+...||||||++.++.. +.....++|+ .+.+.
T Consensus 151 ~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r----~~~~lq~lLr~~~~e~ 226 (637)
T TIGR00602 151 KNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR----DTRALHEILRWKYVSI 226 (637)
T ss_pred ccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh----hHHHHHHHHHHHhhcC
Confidence 000 000000000111223334455554431 134679999999877632 2234556666 67778
Q ss_pred CCeEEEEecCchhHh------hhhh----cChHHHh--ccceEEecCCCHHHHHHHHHHHHHHHhhhc--CCcc-ChHHH
Q 002012 397 GELRCIGATTLNEYR------NYIE----KDPALER--RFQQVFCDQPSVENTISILRGLRERYELHH--GVKI-SDSAL 461 (982)
Q Consensus 397 g~i~vI~at~~~~~~------~~~~----~d~al~r--Rf~~i~i~~Ps~~e~~~IL~~~~~~~~~~~--~v~i-~~~~l 461 (982)
+.+.+|+++|...+. ..+. +.+++++ |+..|.|.+.+..++.+.|+.++..-.... ...+ +++++
T Consensus 227 ~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~l 306 (637)
T TIGR00602 227 GRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTSV 306 (637)
T ss_pred CCceEEEEecCCccccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhhhhccccccccCCHHHH
Confidence 889899988855431 1122 4588987 566899999999999999988887632221 2223 56888
Q ss_pred HHHHHHhhhhhccCCCcchhhHHHHHHHH
Q 002012 462 VSAAVLADRYITERFLPDKAIDLVDEAAA 490 (982)
Q Consensus 462 ~~~~~~s~r~i~~~~~p~~a~~lld~a~~ 490 (982)
..++..+.+.+ +.|+..|..++.
T Consensus 307 ~~I~~~s~GDi------RsAIn~LQf~~~ 329 (637)
T TIGR00602 307 ELLCQGCSGDI------RSAINSLQFSSS 329 (637)
T ss_pred HHHHHhCCChH------HHHHHHHHHHHh
Confidence 88888887766 788888887764
No 244
>PRK05642 DNA replication initiation factor; Validated
Probab=99.41 E-value=7.1e-12 Score=133.83 Aligned_cols=177 Identities=16% Similarity=0.204 Sum_probs=120.9
Q ss_pred CCCCcc-cchHHHHHHHHHhcc----CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEeccccccccc
Q 002012 267 KLDPVI-GRDDEIRRCIQILSR----RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGTC 341 (982)
Q Consensus 267 ~l~~li-G~~~~i~~l~~~L~~----~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~~ 341 (982)
+|++.+ |........++.+.. ...++++|+||+|+|||+|++++++.+... +..++++++..+...
T Consensus 17 tfdnF~~~~~~~a~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~-------~~~v~y~~~~~~~~~-- 87 (234)
T PRK05642 17 TFANYYPGANAAALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQAACLRFEQR-------GEPAVYLPLAELLDR-- 87 (234)
T ss_pred cccccCcCChHHHHHHHHHHhhccccCCCCeEEEECCCCCCHHHHHHHHHHHHHhC-------CCcEEEeeHHHHHhh--
Confidence 556555 444443333332211 123567899999999999999999887432 567888887665521
Q ss_pred ccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCCCeEEEEecCchhHhhhhhcChHHH
Q 002012 342 YRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRGELRCIGATTLNEYRNYIEKDPALE 421 (982)
Q Consensus 342 ~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g~i~vI~at~~~~~~~~~~~d~al~ 421 (982)
...+++.+...+ +|+|||++.+.+.. .....+.+++....++|...+|++++.+.+ +....|.++
T Consensus 88 --------~~~~~~~~~~~d---~LiiDDi~~~~~~~--~~~~~Lf~l~n~~~~~g~~ilits~~~p~~--l~~~~~~L~ 152 (234)
T PRK05642 88 --------GPELLDNLEQYE---LVCLDDLDVIAGKA--DWEEALFHLFNRLRDSGRRLLLAASKSPRE--LPIKLPDLK 152 (234)
T ss_pred --------hHHHHHhhhhCC---EEEEechhhhcCCh--HHHHHHHHHHHHHHhcCCEEEEeCCCCHHH--cCccCccHH
Confidence 123444444333 89999999875322 122345666666667788888887776652 223479999
Q ss_pred hcc---ceEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhh
Q 002012 422 RRF---QQVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRY 471 (982)
Q Consensus 422 rRf---~~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~ 471 (982)
+|| ..+.+..|+.+++..+++..... .++.++++++++++..+.|-
T Consensus 153 SRl~~gl~~~l~~~~~e~~~~il~~ka~~----~~~~l~~ev~~~L~~~~~~d 201 (234)
T PRK05642 153 SRLTLALVFQMRGLSDEDKLRALQLRASR----RGLHLTDEVGHFILTRGTRS 201 (234)
T ss_pred HHHhcCeeeecCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHhcCCC
Confidence 999 57888999999999999854443 47899999999999987653
No 245
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=2.7e-10 Score=123.06 Aligned_cols=182 Identities=18% Similarity=0.295 Sum_probs=120.6
Q ss_pred CCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccccccccCCCCCccccccCCchhHHHhhCCC
Q 002012 687 SDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRLVGAPPGYVGYEEGGQLTEVVRRRPY 766 (982)
Q Consensus 687 ~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~~~~ 766 (982)
.....|..++||+||||||||.+|+.||+.. +..+..+.++++ .|.|..+......+++..+++..
T Consensus 378 K~h~apfRNilfyGPPGTGKTm~ArelAr~S---GlDYA~mTGGDV-----------APlG~qaVTkiH~lFDWakkS~r 443 (630)
T KOG0742|consen 378 KKHQAPFRNILFYGPPGTGKTMFARELARHS---GLDYAIMTGGDV-----------APLGAQAVTKIHKLFDWAKKSRR 443 (630)
T ss_pred ccccchhhheeeeCCCCCCchHHHHHHHhhc---CCceehhcCCCc-----------cccchHHHHHHHHHHHHHhhccc
Confidence 3345677789999999999999999999975 554444444443 23344444445567888877665
Q ss_pred e-EEEEcccccc---------CHHHHHHHHHhh-hcCceecCCCcEEecccEEEEEecCCChHHHHHhhhhcccchHHHH
Q 002012 767 S-VVLFDEIEKA---------HQDVFNILLQLL-DDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVY 835 (982)
Q Consensus 767 ~-Vl~lDEidkl---------~~~~~~~Ll~~l-e~g~~~d~~g~~~~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~ 835 (982)
+ +|||||+|.+ +.....+|..+| ..|.- -.+++++++||.+.+
T Consensus 444 GLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdq---------SrdivLvlAtNrpgd----------------- 497 (630)
T KOG0742|consen 444 GLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQ---------SRDIVLVLATNRPGD----------------- 497 (630)
T ss_pred ceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhccc---------ccceEEEeccCCccc-----------------
Confidence 5 8899999865 333333333332 33321 146889999997654
Q ss_pred HHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHHHHHHH-------------HHhCCCCccCCH----
Q 002012 836 EVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDR-------------LKQKKIDLHYTK---- 898 (982)
Q Consensus 836 ~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~~~~-------------~~~~~~~l~i~~---- 898 (982)
|+.+.-+|||++|.|+-+..++..+++..+++++... +++..-.+++..
T Consensus 498 --------------lDsAV~DRide~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~ 563 (630)
T KOG0742|consen 498 --------------LDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTG 563 (630)
T ss_pred --------------hhHHHHhhhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHH
Confidence 6778889999999999999999999999999876522 222222344333
Q ss_pred HHHHHHHhcCCCCCCCchHHHHHHHH
Q 002012 899 EAVTLLGILGFDPNFGARPVKRVIQQ 924 (982)
Q Consensus 899 ~a~~~L~~~~~~~~~gaR~L~~~i~~ 924 (982)
..+...+.. ...|++|+|...+-.
T Consensus 564 ~~~~EaAkk--TeGfSGREiakLva~ 587 (630)
T KOG0742|consen 564 RKCSEAAKK--TEGFSGREIAKLVAS 587 (630)
T ss_pred HHHHHHHHh--ccCCcHHHHHHHHHH
Confidence 333444432 345666877666554
No 246
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.40 E-value=4.3e-12 Score=148.34 Aligned_cols=247 Identities=19% Similarity=0.221 Sum_probs=146.2
Q ss_pred cccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEecccccccc------
Q 002012 663 KRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKH------ 736 (982)
Q Consensus 663 ~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~------ 736 (982)
.+++||..+++.+.-++. + ..+++|.||||+|||++|+.++..+..... -..++........
T Consensus 192 ~dv~Gq~~~~~al~~aa~----~-------g~~vlliG~pGsGKTtlar~l~~llp~~~~-~~~le~~~i~s~~g~~~~~ 259 (499)
T TIGR00368 192 KDIKGQQHAKRALEIAAA----G-------GHNLLLFGPPGSGKTMLASRLQGILPPLTN-EEAIETARIWSLVGKLIDR 259 (499)
T ss_pred HHhcCcHHHHhhhhhhcc----C-------CCEEEEEecCCCCHHHHHHHHhcccCCCCC-cEEEeccccccchhhhccc
Confidence 678999998776654442 1 125999999999999999999987743221 1122222211000
Q ss_pred -ccc-c-c-----cCCCCCccccccCCchhHHHhhCCCeEEEEccccccCHHHHHHHHHhhhcCceecCC-CcEEec-cc
Q 002012 737 -SVS-R-L-----VGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQ-GRTVSF-TN 806 (982)
Q Consensus 737 -~~~-~-l-----~g~~~g~vg~~~~~~l~~~l~~~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~-g~~~~~-~~ 806 (982)
... . + .....+-+|.. ...-.+.+..+.++||||||++.+++.+++.|++.||+|.++... |..+.+ .+
T Consensus 260 ~~~~~~Pf~~p~~s~s~~~~~ggg-~~~~pG~i~lA~~GvLfLDEi~e~~~~~~~~L~~~LE~~~v~i~r~g~~~~~pa~ 338 (499)
T TIGR00368 260 KQIKQRPFRSPHHSASKPALVGGG-PIPLPGEISLAHNGVLFLDELPEFKRSVLDALREPIEDGSISISRASAKIFYPAR 338 (499)
T ss_pred cccccCCccccccccchhhhhCCc-cccchhhhhccCCCeEecCChhhCCHHHHHHHHHHHHcCcEEEEecCcceeccCC
Confidence 000 0 0 00000011100 001244677888899999999999999999999999999875432 333333 78
Q ss_pred EEEEEecCCChHHHHH-hhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHH------------H
Q 002012 807 CVVIMTSNIGSHYILE-TLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEI------------S 873 (982)
Q Consensus 807 ~iiI~tsn~~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l------------~ 873 (982)
+.+|+++|........ ....|.|.......++. .++.+|++|||..+.+++++.+++ +
T Consensus 339 frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~---------~is~pllDR~dl~~~~~~~~~~~l~~~~~~e~s~~ir 409 (499)
T TIGR00368 339 FQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWN---------KLSGPFLDRIDLSVEVPLLPPEKLLSTGSGESSAEVK 409 (499)
T ss_pred eEEEEecCCcccCcCCCCcccccCCHHHHHHHhh---------hccHhHHhhCCEEEEEcCCCHHHHhccCCCCCHHHHH
Confidence 9999999975322111 12335555544443333 489999999999999998876554 2
Q ss_pred HHHHHHHHHHHHHHHhC---CCC-----------ccCCHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHH
Q 002012 874 KIVEIQMNRVKDRLKQK---KID-----------LHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVA 933 (982)
Q Consensus 874 ~il~~~l~~~~~~~~~~---~~~-----------l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~l~~~la~~ 933 (982)
+.+...-....++++.. .++ ..+++++.+.|....-..+.++|...++++ +...+|+.
T Consensus 410 ~rV~~Ar~~q~~R~~~~~~~~~N~~l~~~~l~~~~~l~~~~~~~l~~a~~~~~lS~R~~~rilr--vArTiAdL 481 (499)
T TIGR00368 410 QRVIKAREIQNIRYEKFANINKNADLNSDEIEQFCKLSAIDANDLEGALNKLGLSSRATHRILK--VARTIADL 481 (499)
T ss_pred HHHHHHHHHHHHHhcCCCCCcccccCCHHHHHhhcCCCHHHHHHHHHHHHhcCCCchHHHHHHH--HHHHHHhh
Confidence 22222222223343321 111 134666766665543233578888888876 45556653
No 247
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.40 E-value=6.6e-12 Score=152.49 Aligned_cols=218 Identities=18% Similarity=0.261 Sum_probs=134.1
Q ss_pred hcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhc----------C------------
Q 002012 662 HKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLF----------N------------ 719 (982)
Q Consensus 662 ~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~----------~------------ 719 (982)
+..|+||+.++..+.-+.. .| ..+++||.|++|||||++|++|++.+. .
T Consensus 3 f~~ivGq~~~~~al~~~av-------~~--~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~ 73 (633)
T TIGR02442 3 FTAIVGQEDLKLALLLNAV-------DP--RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEE 73 (633)
T ss_pred cchhcChHHHHHHHHHHhh-------CC--CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChh
Confidence 4689999999877755443 12 235699999999999999999999872 0
Q ss_pred ----------CCCceEEEeccccccccccccccCCCCCccccccCC--chhHHHhhCCCeEEEEccccccCHHHHHHHHH
Q 002012 720 ----------TENALVRIDMSEYMEKHSVSRLVGAPPGYVGYEEGG--QLTEVVRRRPYSVVLFDEIEKAHQDVFNILLQ 787 (982)
Q Consensus 720 ----------~~~~~v~i~~s~~~~~~~~~~l~g~~~g~vg~~~~~--~l~~~l~~~~~~Vl~lDEidkl~~~~~~~Ll~ 787 (982)
...+|+.+.++.. ...|+|...-......+. .-.+.+..+.++|||||||+.+++.+|+.|++
T Consensus 74 ~~~~~~~~~~~~~pfv~~p~~~t-----~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~~~q~~Ll~ 148 (633)
T TIGR02442 74 CRRKYRPSEQRPVPFVNLPLGAT-----EDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLDDHLVDVLLD 148 (633)
T ss_pred hhhcccccccCCCCeeeCCCCCc-----HHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCCHHHHHHHHH
Confidence 0123333322211 123444311000000000 01234556778899999999999999999999
Q ss_pred hhhcCceec-CCCcEEe-cccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccC
Q 002012 788 LLDDGRITD-SQGRTVS-FTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQ 865 (982)
Q Consensus 788 ~le~g~~~d-~~g~~~~-~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~ 865 (982)
+|++|.+.. ..|.... ..++++|+|+|+.. ..|+++|++||+..|..+
T Consensus 149 ~le~g~~~v~r~g~~~~~~~~~~lIat~np~e------------------------------g~l~~~L~dR~~l~i~v~ 198 (633)
T TIGR02442 149 AAAMGVNRVEREGLSVSHPARFVLIGTMNPEE------------------------------GDLRPQLLDRFGLCVDVA 198 (633)
T ss_pred HHhcCCEEEEECCceeeecCCeEEEEecCCCC------------------------------CCCCHHHHhhcceEEEcc
Confidence 999996432 2233222 37889999999632 127889999998777776
Q ss_pred CCC-hhHHHHHHHHHHH-----------------HHHH---HHHhCCCCccCCHHHHHHHHhcCCCCCC-CchHHHHHHH
Q 002012 866 PLD-SKEISKIVEIQMN-----------------RVKD---RLKQKKIDLHYTKEAVTLLGILGFDPNF-GARPVKRVIQ 923 (982)
Q Consensus 866 pl~-~~~l~~il~~~l~-----------------~~~~---~~~~~~~~l~i~~~a~~~L~~~~~~~~~-gaR~L~~~i~ 923 (982)
++. .++..+++...+. .+.. ..+..--.+.++++++++|+..+...+. |.|....+++
T Consensus 199 ~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~~~~V~is~~~~~~l~~~~~~~~i~s~Ra~i~~~r 278 (633)
T TIGR02442 199 APRDPEERVEIIRRRLAFDADPEAFAARWAAEQEELRNRIARARSLLPSVRISDSLIRFISELCIEFGVDGHRADIVMAR 278 (633)
T ss_pred CCCchHHHHHHHHHHHhhccCcHHHHHHhhhhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHH
Confidence 654 4555666654322 0001 1111223478899999999887544444 4555444443
No 248
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=1.3e-12 Score=132.44 Aligned_cols=167 Identities=28% Similarity=0.456 Sum_probs=122.3
Q ss_pred hcccccchHHHHHHHHHHHHHh--------cCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccc
Q 002012 662 HKRVIGQDIAVKSVADAIRRSR--------AGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYM 733 (982)
Q Consensus 662 ~~~iiGq~~a~~~l~~~i~~~~--------~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~ 733 (982)
.+.+-|.+..++.|.+.|.... .|+ .+|.+ +||+||||||||.+|+++|..- .-.|+++..+++.
T Consensus 146 YeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGI---aQPKG-vlLygppgtGktLlaraVahht---~c~firvsgselv 218 (404)
T KOG0728|consen 146 YEMIGGLDKQIKEIKEVIELPVKHPELFEALGI---AQPKG-VLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSELV 218 (404)
T ss_pred HHHhccHHHHHHHHHHHHhccccCHHHHHhcCC---CCCcc-eEEecCCCCchhHHHHHHHhhc---ceEEEEechHHHH
Confidence 3557778888888888875321 132 35665 9999999999999999999875 6789999998874
Q ss_pred cccccccccCCCCCccccccCCchhHHHhhCCCeEEEEccccccC-----------HHHHHHHHHhhhcCceecCCCcEE
Q 002012 734 EKHSVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEIEKAH-----------QDVFNILLQLLDDGRITDSQGRTV 802 (982)
Q Consensus 734 ~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~~~~~Vl~lDEidkl~-----------~~~~~~Ll~~le~g~~~d~~g~~~ 802 (982)
.+++|... ...+.++-..++..++|||.||||... .++|..+|.+|.. -+|..
T Consensus 219 -----qk~igegs-----rmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnq-----ldgfe- 282 (404)
T KOG0728|consen 219 -----QKYIGEGS-----RMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQ-----LDGFE- 282 (404)
T ss_pred -----HHHhhhhH-----HHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHh-----ccccc-
Confidence 34455422 222456666788888999999999873 4688888888753 11111
Q ss_pred ecccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHH--hccccccccCCCChhHHHHHHHHHH
Q 002012 803 SFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFL--NRIDEYIVFQPLDSKEISKIVEIQM 880 (982)
Q Consensus 803 ~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll--~Rid~ii~F~pl~~~~l~~il~~~l 880 (982)
...|+-+||+||.-. .++|+++ +|||..|.|||++.+...+|+...-
T Consensus 283 atknikvimatnrid-------------------------------ild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 283 ATKNIKVIMATNRID-------------------------------ILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred cccceEEEEeccccc-------------------------------cccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 236888999999532 1456665 8999999999999999999887765
Q ss_pred HH
Q 002012 881 NR 882 (982)
Q Consensus 881 ~~ 882 (982)
++
T Consensus 332 rk 333 (404)
T KOG0728|consen 332 RK 333 (404)
T ss_pred hh
Confidence 44
No 249
>PHA02244 ATPase-like protein
Probab=99.39 E-value=1.2e-11 Score=136.24 Aligned_cols=169 Identities=16% Similarity=0.177 Sum_probs=112.5
Q ss_pred hcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccccccc
Q 002012 662 HKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRL 741 (982)
Q Consensus 662 ~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l 741 (982)
....+|+...+......+.++... .. ++||.||||||||++|++||..+ +.+|+.++.. .+ ...+
T Consensus 95 d~~~ig~sp~~~~~~~ri~r~l~~------~~-PVLL~GppGtGKTtLA~aLA~~l---g~pfv~In~l--~d---~~~L 159 (383)
T PHA02244 95 DTTKIASNPTFHYETADIAKIVNA------NI-PVFLKGGAGSGKNHIAEQIAEAL---DLDFYFMNAI--MD---EFEL 159 (383)
T ss_pred CCcccCCCHHHHHHHHHHHHHHhc------CC-CEEEECCCCCCHHHHHHHHHHHh---CCCEEEEecC--hH---HHhh
Confidence 355677777776565555443221 11 39999999999999999999997 7789888732 11 1223
Q ss_pred cCCCCCccccccCCchhHHHhhCCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCChHHHH
Q 002012 742 VGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYIL 821 (982)
Q Consensus 742 ~g~~~g~vg~~~~~~l~~~l~~~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~i~ 821 (982)
.|.... .|....+.+..+++ .+++|+|||++.++++++..|..+++++.+....+......++.+|+|+|.......
T Consensus 160 ~G~i~~-~g~~~dgpLl~A~~--~GgvLiLDEId~a~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~ 236 (383)
T PHA02244 160 KGFIDA-NGKFHETPFYEAFK--KGGLFFIDEIDASIPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGAD 236 (383)
T ss_pred cccccc-cccccchHHHHHhh--cCCEEEEeCcCcCCHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcc
Confidence 332111 12222234555554 456999999999999999999999998876655555445578999999997432110
Q ss_pred HhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCCh
Q 002012 822 ETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDS 869 (982)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~ 869 (982)
..+. + .+.+.+++++|| ..|.|..+++
T Consensus 237 ~~y~-G-------------------~k~L~~AllDRF-v~I~~dyp~~ 263 (383)
T PHA02244 237 HIYV-A-------------------RNKIDGATLDRF-APIEFDYDEK 263 (383)
T ss_pred cccC-C-------------------CcccCHHHHhhc-EEeeCCCCcH
Confidence 1000 0 134789999999 5788887764
No 250
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=1.6e-12 Score=145.25 Aligned_cols=214 Identities=22% Similarity=0.290 Sum_probs=134.9
Q ss_pred cCCHhHHHHHHHHhhCC---CCcccchhHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecC
Q 002012 625 EVTDLDIAEIVSKWTGI---PLSSLQQSEREKLVMLEEVLHKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGP 701 (982)
Q Consensus 625 ~v~~~~i~~~~~~~~gi---~~~~~~~~~~~~l~~l~~~l~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp 701 (982)
.+....+.+++....|. +....... ..... ...-+.+|+||+.+++.+.-+. +|.+ |+||+||
T Consensus 141 v~~~~~l~ev~~~l~g~~~l~~~~~~~~-~~~~~--~~~D~~DV~GQ~~AKrAleiAA----AGgH-------nLl~~Gp 206 (490)
T COG0606 141 VYGARYLEEVVNFLEGKLRLPIPIPSEV-IESFS--LAPDFKDVKGQEQAKRALEIAA----AGGH-------NLLLVGP 206 (490)
T ss_pred ccchhhHHHHHHHhcCCcCCCCCCcccc-ccccc--cCcchhhhcCcHHHHHHHHHHH----hcCC-------cEEEecC
Confidence 44456677777777663 11111111 00000 0223478999999988875544 3332 5999999
Q ss_pred CCCchHHHHHHHHHHhcCCCC-------ceEEEe-----------cccccccc-c--cccccCCCCCccccccCCchhHH
Q 002012 702 TGVGKTELGKALADFLFNTEN-------ALVRID-----------MSEYMEKH-S--VSRLVGAPPGYVGYEEGGQLTEV 760 (982)
Q Consensus 702 ~GtGKT~lA~~la~~l~~~~~-------~~v~i~-----------~s~~~~~~-~--~~~l~g~~~g~vg~~~~~~l~~~ 760 (982)
||||||++|+.+...|..-.. .+..++ ..-|..+| + ...++|.. +....+.
T Consensus 207 PGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~g~~~~~~~~~~~rPFr~PHHsaS~~aLvGGG--------~~p~PGe 278 (490)
T COG0606 207 PGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLAGDLHEGCPLKIHRPFRAPHHSASLAALVGGG--------GVPRPGE 278 (490)
T ss_pred CCCchHHhhhhhcccCCCCChHHHHHHHHHhhhcccccccCccceeCCccCCCccchHHHHhCCC--------CCCCCCc
Confidence 999999999999988721100 000111 11111111 1 11233321 1223456
Q ss_pred HhhCCCeEEEEccccccCHHHHHHHHHhhhcCceecCC--CcEEecccEEEEEecCCChHHHH-HhhhhcccchHHHHHH
Q 002012 761 VRRRPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQ--GRTVSFTNCVVIMTSNIGSHYIL-ETLQSVQDSKEAVYEV 837 (982)
Q Consensus 761 l~~~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~--g~~~~~~~~iiI~tsn~~~~~i~-~~~~~~~~~~~~~~~~ 837 (982)
+..++++||||||+-.+...+++.|.+-||+|++..+. .......++.+|+++|+...... .....|.|.......+
T Consensus 279 IsLAH~GVLFLDElpef~~~iLe~LR~PLE~g~i~IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y 358 (490)
T COG0606 279 ISLAHNGVLFLDELPEFKRSILEALREPLENGKIIISRAGSKVTYPARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRY 358 (490)
T ss_pred eeeecCCEEEeeccchhhHHHHHHHhCccccCcEEEEEcCCeeEEeeeeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHH
Confidence 77889999999999999999999999999999987654 33444489999999997654332 2344566665554444
Q ss_pred HHHHHHHHHHhhcChHHHhccccccccCCCCh
Q 002012 838 MKKQVVELARQTFRPEFLNRIDEYIVFQPLDS 869 (982)
Q Consensus 838 ~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~ 869 (982)
..+ ++..|++|||..|..+.++.
T Consensus 359 ~~k---------lSgp~lDRiDl~vev~~~~~ 381 (490)
T COG0606 359 LNK---------LSGPFLDRIDLMVEVPRLSA 381 (490)
T ss_pred HHH---------hhHHHHhhhhheecccCCCH
Confidence 433 77789999999988888774
No 251
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.39 E-value=6.1e-12 Score=134.14 Aligned_cols=112 Identities=21% Similarity=0.423 Sum_probs=88.0
Q ss_pred eEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHH
Q 002012 767 SVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELA 846 (982)
Q Consensus 767 ~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 846 (982)
+||||||++.++-+.+..|.++||+. + --|+||+||.|...+... +...+
T Consensus 293 GVLFIDEvHmLDIE~FsFlnrAlEse-----------~-aPIii~AtNRG~~kiRGT--d~~sP---------------- 342 (450)
T COG1224 293 GVLFIDEVHMLDIECFSFLNRALESE-----------L-APIIILATNRGMTKIRGT--DIESP---------------- 342 (450)
T ss_pred ceEEEechhhhhHHHHHHHHHHhhcc-----------c-CcEEEEEcCCceeeeccc--CCcCC----------------
Confidence 49999999999999999999999962 2 258999999987655432 00000
Q ss_pred HhhcChHHHhccccccccCCCChhHHHHHHHHHHHHHHHHHHhCCCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHH
Q 002012 847 RQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQ 924 (982)
Q Consensus 847 ~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~~~~~~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~ 924 (982)
..++.+|++|+ .+|...|++++++++|+....+. . .+.++++|+++|...+-. ..|+..++-
T Consensus 343 -hGIP~DlLDRl-lII~t~py~~~EireIi~iRa~e-------e--~i~l~~~Ale~L~~ig~e-----tSLRYa~qL 404 (450)
T COG1224 343 -HGIPLDLLDRL-LIISTRPYSREEIREIIRIRAKE-------E--DIELSDDALEYLTDIGEE-----TSLRYAVQL 404 (450)
T ss_pred -CCCCHhhhhhe-eEEecCCCCHHHHHHHHHHhhhh-------h--ccccCHHHHHHHHhhchh-----hhHHHHHHh
Confidence 34788999999 79999999999999999987765 3 388999999999987543 466666663
No 252
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.39 E-value=9.3e-12 Score=155.50 Aligned_cols=218 Identities=19% Similarity=0.263 Sum_probs=140.5
Q ss_pred CCHHHHHHHHHhhhcccccccCCCCchhHHHHHhhhhhHHHhhcCCCCCcccchHHHHHHHHHhccC---------CCCC
Q 002012 222 LNEKDLKDAVKAVRGHQRVTDQNPEGKYQALEKYGNDLTELARSGKLDPVIGRDDEIRRCIQILSRR---------TKNN 292 (982)
Q Consensus 222 i~~~~l~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~---------~~~~ 292 (982)
|+.+.+.+.|.+|.|.|-. ....+....+.. .+......++|++..++.+...+.+. +..+
T Consensus 531 v~~~~i~~vv~~~tgip~~--~~~~~~~~~l~~--------l~~~l~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~ 600 (857)
T PRK10865 531 VTDAEIAEVLARWTGIPVS--RMLESEREKLLR--------MEQELHHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGS 600 (857)
T ss_pred cCHHHHHHHHHHHHCCCch--hhhhhHHHHHHH--------HHHHhCCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCce
Confidence 5666677777777665511 111111112211 12223456899999988888876531 1135
Q ss_pred cEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEeccccccc----------ccccccHHHHHHHHHHHHHhcCC
Q 002012 293 PVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAG----------TCYRGDFEKRLKAVLKEVTKSNG 362 (982)
Q Consensus 293 iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~----------~~~~g~~e~~l~~l~~~~~~~~~ 362 (982)
++|+||||||||++|++||+.+... +..++.++++.+... ..|.|.-+. ..+.+.....+
T Consensus 601 ~Lf~Gp~G~GKT~lA~aLa~~l~~~-------~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~~---g~l~~~v~~~p 670 (857)
T PRK10865 601 FLFLGPTGVGKTELCKALANFMFDS-------DDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEG---GYLTEAVRRRP 670 (857)
T ss_pred EEEECCCCCCHHHHHHHHHHHhhcC-------CCcEEEEEhHHhhhhhhHHHHhCCCCcccccchh---HHHHHHHHhCC
Confidence 7899999999999999999988532 456888888766421 123332221 22233333355
Q ss_pred CeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCCC-------------eEEEEecCch--hHh------------h---
Q 002012 363 QIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRGE-------------LRCIGATTLN--EYR------------N--- 412 (982)
Q Consensus 363 ~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g~-------------i~vI~at~~~--~~~------------~--- 412 (982)
..||||||++.+. .++++.|+++++.|. ..+|+|||.. .+. .
T Consensus 671 ~~vLllDEieka~--------~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~ 742 (857)
T PRK10865 671 YSVILLDEVEKAH--------PDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVL 742 (857)
T ss_pred CCeEEEeehhhCC--------HHHHHHHHHHHhhCceecCCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHH
Confidence 6799999999875 678899999998653 2478888862 111 0
Q ss_pred ---hhhcChHHHhccc-eEEecCCCHHHHHHHHHHHHHHHhh-----hcCCccChHHHHHHHHH
Q 002012 413 ---YIEKDPALERRFQ-QVFCDQPSVENTISILRGLRERYEL-----HHGVKISDSALVSAAVL 467 (982)
Q Consensus 413 ---~~~~d~al~rRf~-~i~i~~Ps~~e~~~IL~~~~~~~~~-----~~~v~i~~~~l~~~~~~ 467 (982)
.-...|+|.+|++ .+.+.+++.+++..|++....++.. ...+.++++++..++..
T Consensus 743 ~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~l~~rl~~~gi~l~is~~al~~L~~~ 806 (857)
T PRK10865 743 GVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEERGYEIHISDEALKLLSEN 806 (857)
T ss_pred HHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCcCcCCHHHHHHHHHc
Confidence 1124689999996 6666777899999998776665432 23456789999888765
No 253
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.39 E-value=6.6e-12 Score=139.81 Aligned_cols=234 Identities=18% Similarity=0.240 Sum_probs=139.8
Q ss_pred hcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcC----------C--CCc-eEEEe
Q 002012 662 HKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFN----------T--ENA-LVRID 728 (982)
Q Consensus 662 ~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~----------~--~~~-~v~i~ 728 (982)
+..|+||++++..+.-++- ....+++++.|++|+|||+++++++..+.. + ..+ +...+
T Consensus 3 f~~ivgq~~~~~al~~~~~---------~~~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVI---------DPKIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMMCEE 73 (337)
T ss_pred ccccccHHHHHHHHHHHhc---------CCCCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccccChH
Confidence 4679999999988755443 112457999999999999999999998821 0 011 11111
Q ss_pred ccccccc-------------------cccccccCCCCCccccccCCc--hhHHHhhCCCeEEEEccccccCHHHHHHHHH
Q 002012 729 MSEYMEK-------------------HSVSRLVGAPPGYVGYEEGGQ--LTEVVRRRPYSVVLFDEIEKAHQDVFNILLQ 787 (982)
Q Consensus 729 ~s~~~~~-------------------~~~~~l~g~~~g~vg~~~~~~--l~~~l~~~~~~Vl~lDEidkl~~~~~~~Ll~ 787 (982)
|...... ....+++|...-...-..+.. -.+.+.++.+++||+||++.+++..|+.|++
T Consensus 74 ~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~~~Q~~Ll~ 153 (337)
T TIGR02030 74 VRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLEDHLVDVLLD 153 (337)
T ss_pred HhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCHHHHHHHHH
Confidence 1110000 000123332110000000110 1234556777899999999999999999999
Q ss_pred hhhcCceec-CCCcEEec-ccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccC
Q 002012 788 LLDDGRITD-SQGRTVSF-TNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQ 865 (982)
Q Consensus 788 ~le~g~~~d-~~g~~~~~-~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~ 865 (982)
+|++|.++- ..|....+ .++++|+|+|... +.|+++|++||...+.+.
T Consensus 154 ~l~~g~~~v~r~G~~~~~~~r~iviat~np~e------------------------------g~l~~~LldRf~l~i~l~ 203 (337)
T TIGR02030 154 VAASGWNVVEREGISIRHPARFVLVGSGNPEE------------------------------GELRPQLLDRFGLHAEIR 203 (337)
T ss_pred HHHhCCeEEEECCEEEEcCCCEEEEecccccc------------------------------CCCCHHHHhhcceEEECC
Confidence 999986332 22333333 5678888877532 238999999998888888
Q ss_pred CCCh-hHHHHHHHHHHHH----------H-------HH---HHHhCCCCccCCHHHHHHHHhcCCCCC-CCchHHHHHHH
Q 002012 866 PLDS-KEISKIVEIQMNR----------V-------KD---RLKQKKIDLHYTKEAVTLLGILGFDPN-FGARPVKRVIQ 923 (982)
Q Consensus 866 pl~~-~~l~~il~~~l~~----------~-------~~---~~~~~~~~l~i~~~a~~~L~~~~~~~~-~gaR~L~~~i~ 923 (982)
+++. ++..+|+...... + .+ ..++.-..+.+++++++++++.+..-. -|-|.-..
T Consensus 204 ~p~~~eer~eIL~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~--- 280 (337)
T TIGR02030 204 TVRDVELRVEIVERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELT--- 280 (337)
T ss_pred CCCCHHHHHHHHHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHH---
Confidence 7776 6667777663211 1 11 112222457899999999887532211 13344333
Q ss_pred HHHHHHHHHHHHcCC
Q 002012 924 QLVENEIAVAILKGD 938 (982)
Q Consensus 924 ~~l~~~la~~~l~~~ 938 (982)
++..+-|.+.+++.
T Consensus 281 -l~raArA~Aal~GR 294 (337)
T TIGR02030 281 -LNRAAKALAAFEGR 294 (337)
T ss_pred -HHHHHHHHHHHcCC
Confidence 34447777788774
No 254
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.39 E-value=9.5e-12 Score=140.54 Aligned_cols=197 Identities=16% Similarity=0.210 Sum_probs=133.7
Q ss_pred hhcCCCCCcccchHHHHHHHHHhccCCCCC-cEEeCCCCCcHHHHHHHHHHHhhcCCCCCC---------C---------
Q 002012 263 ARSGKLDPVIGRDDEIRRCIQILSRRTKNN-PVIIGEPGVGKTAIAEGLAQRIVRGDVPET---------L--------- 323 (982)
Q Consensus 263 ~~~~~l~~liG~~~~i~~l~~~L~~~~~~~-iLL~GppGvGKT~la~~la~~l~~~~~p~~---------l--------- 323 (982)
.+|..+++++|+++.++.+.+.+.++..+| +||+||+|+||+++|..+|+.+.+...... +
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c 92 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVA 92 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHH
Confidence 478889999999999999999998877777 778999999999999999999976432110 0
Q ss_pred ------CCCeEEEEecccccccccccc-cHHHHHHHHHHHHHh---cCCCeEEEEccchhhhhCCCCCchhhHHHHHHhh
Q 002012 324 ------QNRKLISLDMASLVAGTCYRG-DFEKRLKAVLKEVTK---SNGQIILFIDELHTIIGAGNQSGAMDASNMLKPM 393 (982)
Q Consensus 324 ------~~~~v~~l~~~~l~~~~~~~g-~~e~~l~~l~~~~~~---~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~ 393 (982)
....++.+....-..+.+... -..+.++++...+.. .+++.|++|||+|.+. ....|.|+..
T Consensus 93 ~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~--------~~aanaLLK~ 164 (365)
T PRK07471 93 RRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMN--------ANAANALLKV 164 (365)
T ss_pred HHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcC--------HHHHHHHHHH
Confidence 011222222110000000000 112334454444332 2556799999999986 6777889888
Q ss_pred hcC--CCeEEEEecCchhHhhhhhcChHHHhccceEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhh
Q 002012 394 LGR--GELRCIGATTLNEYRNYIEKDPALERRFQQVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRY 471 (982)
Q Consensus 394 le~--g~i~vI~at~~~~~~~~~~~d~al~rRf~~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~ 471 (982)
+++ +...+|.+|+... .+.|.+++||+.+.+..|+.++..++|... ....+++.+..++.+|++
T Consensus 165 LEepp~~~~~IL~t~~~~-----~llpti~SRc~~i~l~~l~~~~i~~~L~~~--------~~~~~~~~~~~l~~~s~G- 230 (365)
T PRK07471 165 LEEPPARSLFLLVSHAPA-----RLLPTIRSRCRKLRLRPLAPEDVIDALAAA--------GPDLPDDPRAALAALAEG- 230 (365)
T ss_pred HhcCCCCeEEEEEECCch-----hchHHhhccceEEECCCCCHHHHHHHHHHh--------cccCCHHHHHHHHHHcCC-
Confidence 885 4677788777776 568999999999999999999988887642 233445555666777653
Q ss_pred hccCCCcchhhHHHH
Q 002012 472 ITERFLPDKAIDLVD 486 (982)
Q Consensus 472 i~~~~~p~~a~~lld 486 (982)
.|..+..+++
T Consensus 231 -----sp~~Al~ll~ 240 (365)
T PRK07471 231 -----SVGRALRLAG 240 (365)
T ss_pred -----CHHHHHHHhc
Confidence 4566666654
No 255
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.39 E-value=1.3e-11 Score=131.66 Aligned_cols=190 Identities=17% Similarity=0.191 Sum_probs=122.8
Q ss_pred CCCCccc--chHHHHHHHHHhccCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccccccccc
Q 002012 267 KLDPVIG--RDDEIRRCIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGTCYRG 344 (982)
Q Consensus 267 ~l~~liG--~~~~i~~l~~~L~~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~~~~g 344 (982)
+|++.++ .+..++.+.+.+......+++|+||+|||||++|+.+++..... +.+++.++++.+...
T Consensus 13 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~-------~~~~~~i~~~~~~~~----- 80 (226)
T TIGR03420 13 TFDNFYAGGNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEER-------GKSAIYLPLAELAQA----- 80 (226)
T ss_pred hhcCcCcCCcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhc-------CCcEEEEeHHHHHHh-----
Confidence 4666663 33466666665555667789999999999999999999987532 567888887766521
Q ss_pred cHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCCCeEEEEecCchhHhhhhhcChHHHhcc
Q 002012 345 DFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRGELRCIGATTLNEYRNYIEKDPALERRF 424 (982)
Q Consensus 345 ~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g~i~vI~at~~~~~~~~~~~d~al~rRf 424 (982)
...++..+.. ..+|+|||+|.+.... .....+.+++....+.+. .+|.+++... .......+.+.+||
T Consensus 81 -----~~~~~~~~~~---~~lLvIDdi~~l~~~~--~~~~~L~~~l~~~~~~~~-~iIits~~~~-~~~~~~~~~L~~r~ 148 (226)
T TIGR03420 81 -----DPEVLEGLEQ---ADLVCLDDVEAIAGQP--EWQEALFHLYNRVREAGG-RLLIAGRAAP-AQLPLRLPDLRTRL 148 (226)
T ss_pred -----HHHHHhhccc---CCEEEEeChhhhcCCh--HHHHHHHHHHHHHHHcCC-eEEEECCCCh-HHCCcccHHHHHHH
Confidence 1233333322 2389999999985321 001223333333333444 5566665433 11112237899887
Q ss_pred c---eEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCCcchhhHHHHHHHH
Q 002012 425 Q---QVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLPDKAIDLVDEAAA 490 (982)
Q Consensus 425 ~---~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~p~~a~~lld~a~~ 490 (982)
. .+.++.|+.+++..+++....+ .++.++++++..++..+.+. +..+..+++.+..
T Consensus 149 ~~~~~i~l~~l~~~e~~~~l~~~~~~----~~~~~~~~~l~~L~~~~~gn------~r~L~~~l~~~~~ 207 (226)
T TIGR03420 149 AWGLVFQLPPLSDEEKIAALQSRAAR----RGLQLPDEVADYLLRHGSRD------MGSLMALLDALDR 207 (226)
T ss_pred hcCeeEecCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHhccCC------HHHHHHHHHHHHH
Confidence 3 7889999999999998776554 57889999999988875543 4667777666554
No 256
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.39 E-value=1.8e-11 Score=130.61 Aligned_cols=159 Identities=14% Similarity=0.197 Sum_probs=116.8
Q ss_pred eEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccccccccCCCCCccccccCCchhHHHhhCCCeEEEEccc
Q 002012 695 SFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEI 774 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~~~~~Vl~lDEi 774 (982)
+++|+||+|||||++|+++++.+...+..++.+++....... .. ....++|+|||+
T Consensus 44 ~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~~----------------------~~--~~~~~~liiDdi 99 (227)
T PRK08903 44 FFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLAF----------------------DF--DPEAELYAVDDV 99 (227)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHHH----------------------hh--cccCCEEEEeCh
Confidence 599999999999999999999987667788888887653210 00 112459999999
Q ss_pred cccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHH
Q 002012 775 EKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEF 854 (982)
Q Consensus 775 dkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l 854 (982)
|.+++..+..|+.+++... . ....++|+|++..... ..+.+++
T Consensus 100 ~~l~~~~~~~L~~~~~~~~--~-------~~~~~vl~~~~~~~~~----------------------------~~l~~~L 142 (227)
T PRK08903 100 ERLDDAQQIALFNLFNRVR--A-------HGQGALLVAGPAAPLA----------------------------LPLREDL 142 (227)
T ss_pred hhcCchHHHHHHHHHHHHH--H-------cCCcEEEEeCCCCHHh----------------------------CCCCHHH
Confidence 9999999999999986421 0 0124567776643210 1256788
Q ss_pred Hhccc--cccccCCCChhHHHHHHHHHHHHHHHHHHhCCCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHHHH
Q 002012 855 LNRID--EYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLV 926 (982)
Q Consensus 855 l~Rid--~ii~F~pl~~~~l~~il~~~l~~~~~~~~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~l 926 (982)
.+|+. ..|.++|++.++...++...... .+ +.++++++++|+. .|++|+ |.|+++++.+-
T Consensus 143 ~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~-------~~--v~l~~~al~~L~~-~~~gn~--~~l~~~l~~l~ 204 (227)
T PRK08903 143 RTRLGWGLVYELKPLSDADKIAALKAAAAE-------RG--LQLADEVPDYLLT-HFRRDM--PSLMALLDALD 204 (227)
T ss_pred HHHHhcCeEEEecCCCHHHHHHHHHHHHHH-------cC--CCCCHHHHHHHHH-hccCCH--HHHHHHHHHHH
Confidence 88983 58999999998777666544332 34 8899999999999 588776 89999999843
No 257
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.38 E-value=9.2e-12 Score=142.69 Aligned_cols=194 Identities=19% Similarity=0.320 Sum_probs=127.9
Q ss_pred hcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccccccc
Q 002012 662 HKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRL 741 (982)
Q Consensus 662 ~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l 741 (982)
+++++||+.+++.+.+.+... +...++||+||||+|||++|+++++.+.+.+..- .+..+ ....+
T Consensus 16 ~~~iig~~~~~~~l~~~i~~~--------~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~---~~~~~----~~~~~ 80 (367)
T PRK14970 16 FDDVVGQSHITNTLLNAIENN--------HLAQALLFCGPRGVGKTTCARILARKINQPGYDD---PNEDF----SFNIF 80 (367)
T ss_pred HHhcCCcHHHHHHHHHHHHcC--------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC---CCCCC----CcceE
Confidence 478999999999998888732 2223599999999999999999999985421100 00000 00000
Q ss_pred cCCCCCccccccCCchhHHHhh----CCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCCh
Q 002012 742 VGAPPGYVGYEEGGQLTEVVRR----RPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGS 817 (982)
Q Consensus 742 ~g~~~g~vg~~~~~~l~~~l~~----~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~ 817 (982)
-....+..+.+....+.+.+.. .++.||+|||+|.+....++.|++.+++. ..+++||++++...
T Consensus 81 ~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~-----------~~~~~~Il~~~~~~ 149 (367)
T PRK14970 81 ELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEP-----------PAHAIFILATTEKH 149 (367)
T ss_pred EeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCC-----------CCceEEEEEeCCcc
Confidence 0000011111111222222222 23579999999999999999999999862 13577888776322
Q ss_pred HHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHHHHHHHHHhCCCCccCC
Q 002012 818 HYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYT 897 (982)
Q Consensus 818 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~~~~~~~~~~~l~i~ 897 (982)
.+.+++.+|+ .++.|.|++.+++..++...+.+ .+ +.++
T Consensus 150 -------------------------------kl~~~l~sr~-~~v~~~~~~~~~l~~~l~~~~~~-------~g--~~i~ 188 (367)
T PRK14970 150 -------------------------------KIIPTILSRC-QIFDFKRITIKDIKEHLAGIAVK-------EG--IKFE 188 (367)
T ss_pred -------------------------------cCCHHHHhcc-eeEecCCccHHHHHHHHHHHHHH-------cC--CCCC
Confidence 1567888999 58999999999999888887765 44 6799
Q ss_pred HHHHHHHHhcCCCCCCCchHHHHHHHHH
Q 002012 898 KEAVTLLGILGFDPNFGARPVKRVIQQL 925 (982)
Q Consensus 898 ~~a~~~L~~~~~~~~~gaR~L~~~i~~~ 925 (982)
++++++|+... . .+.|.+.+.++++
T Consensus 189 ~~al~~l~~~~-~--gdlr~~~~~lekl 213 (367)
T PRK14970 189 DDALHIIAQKA-D--GALRDALSIFDRV 213 (367)
T ss_pred HHHHHHHHHhC-C--CCHHHHHHHHHHH
Confidence 99999999863 2 2346666666653
No 258
>PRK08727 hypothetical protein; Validated
Probab=99.38 E-value=4.5e-11 Score=127.64 Aligned_cols=188 Identities=16% Similarity=0.221 Sum_probs=122.4
Q ss_pred CCCCcccch-HHHHHHHHHhccCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEeccccccccccccc
Q 002012 267 KLDPVIGRD-DEIRRCIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGTCYRGD 345 (982)
Q Consensus 267 ~l~~liG~~-~~i~~l~~~L~~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~~~~g~ 345 (982)
+|++.++.. +.+..+.........+.++|+||+|||||+++++++..+.+. +..+.++++..+
T Consensus 17 ~f~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~-------~~~~~y~~~~~~--------- 80 (233)
T PRK08727 17 RFDSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQA-------GRSSAYLPLQAA--------- 80 (233)
T ss_pred ChhhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc-------CCcEEEEeHHHh---------
Confidence 455555444 444443333323334458899999999999999999987553 556666664332
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCCCeEEEEecCchhHhhhhhcChHHHhcc-
Q 002012 346 FEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRGELRCIGATTLNEYRNYIEKDPALERRF- 424 (982)
Q Consensus 346 ~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g~i~vI~at~~~~~~~~~~~d~al~rRf- 424 (982)
...+...++.+... -+|+|||++.+..... ......+++....+++ ..+|+|++..+ ..+-.++|.+.+||
T Consensus 81 -~~~~~~~~~~l~~~---dlLiIDDi~~l~~~~~--~~~~lf~l~n~~~~~~-~~vI~ts~~~p-~~l~~~~~dL~SRl~ 152 (233)
T PRK08727 81 -AGRLRDALEALEGR---SLVALDGLESIAGQRE--DEVALFDFHNRARAAG-ITLLYTARQMP-DGLALVLPDLRSRLA 152 (233)
T ss_pred -hhhHHHHHHHHhcC---CEEEEeCcccccCChH--HHHHHHHHHHHHHHcC-CeEEEECCCCh-hhhhhhhHHHHHHHh
Confidence 22344555555433 3899999998863221 1123333333333333 55666666533 23445689999995
Q ss_pred --ceEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCCcchhhHHHHHH
Q 002012 425 --QQVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLPDKAIDLVDEA 488 (982)
Q Consensus 425 --~~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~p~~a~~lld~a 488 (982)
..+.+++|+.+++..|++..+.. .++.++++++.+++..+.|.+ ..+..+++..
T Consensus 153 ~~~~~~l~~~~~e~~~~iL~~~a~~----~~l~l~~e~~~~La~~~~rd~------r~~l~~L~~l 208 (233)
T PRK08727 153 QCIRIGLPVLDDVARAAVLRERAQR----RGLALDEAAIDWLLTHGEREL------AGLVALLDRL 208 (233)
T ss_pred cCceEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHhCCCCH------HHHHHHHHHH
Confidence 48899999999999999876665 479999999999999977543 4555555543
No 259
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.37 E-value=1.1e-11 Score=132.33 Aligned_cols=183 Identities=16% Similarity=0.195 Sum_probs=117.0
Q ss_pred cCCCCCcc-cchHHHHHHHHHhcc--CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEeccccccccc
Q 002012 265 SGKLDPVI-GRDDEIRRCIQILSR--RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGTC 341 (982)
Q Consensus 265 ~~~l~~li-G~~~~i~~l~~~L~~--~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~~ 341 (982)
+.+|++++ |.+..+...+..+.. ....+++|+||+|||||++|+++++..... +..++.+++..+...
T Consensus 14 ~~~~d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~-------~~~~~~i~~~~~~~~-- 84 (227)
T PRK08903 14 PPTFDNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYG-------GRNARYLDAASPLLA-- 84 (227)
T ss_pred hhhhcccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhC-------CCcEEEEehHHhHHH--
Confidence 44677766 444444444443332 345679999999999999999999987543 567788876554311
Q ss_pred ccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCCCeEEEEecCchhHhhhhhcChHHH
Q 002012 342 YRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRGELRCIGATTLNEYRNYIEKDPALE 421 (982)
Q Consensus 342 ~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g~i~vI~at~~~~~~~~~~~d~al~ 421 (982)
+... ....+|+|||+|.+.... ...+.+++...-+.+...+|.+++..+- ...+.+.+.
T Consensus 85 ------------~~~~---~~~~~liiDdi~~l~~~~----~~~L~~~~~~~~~~~~~~vl~~~~~~~~--~~~l~~~L~ 143 (227)
T PRK08903 85 ------------FDFD---PEAELYAVDDVERLDDAQ----QIALFNLFNRVRAHGQGALLVAGPAAPL--ALPLREDLR 143 (227)
T ss_pred ------------Hhhc---ccCCEEEEeChhhcCchH----HHHHHHHHHHHHHcCCcEEEEeCCCCHH--hCCCCHHHH
Confidence 1111 223489999999874211 1223333333334566545556554431 223568899
Q ss_pred hcc---ceEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCCcchhhHHHHH
Q 002012 422 RRF---QQVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLPDKAIDLVDE 487 (982)
Q Consensus 422 rRf---~~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~p~~a~~lld~ 487 (982)
+|| ..+.+++|+.++...+++.+..+ .++.++++++.+++..+.+.+ ..+..+++.
T Consensus 144 sr~~~~~~i~l~pl~~~~~~~~l~~~~~~----~~v~l~~~al~~L~~~~~gn~------~~l~~~l~~ 202 (227)
T PRK08903 144 TRLGWGLVYELKPLSDADKIAALKAAAAE----RGLQLADEVPDYLLTHFRRDM------PSLMALLDA 202 (227)
T ss_pred HHHhcCeEEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHhccCCH------HHHHHHHHH
Confidence 897 48889999988888888766555 689999999999988755432 455555443
No 260
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=2.6e-12 Score=135.16 Aligned_cols=148 Identities=22% Similarity=0.366 Sum_probs=110.7
Q ss_pred cEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccccccccccHHHHHHHHHHHHHh----cCCCeEEEE
Q 002012 293 PVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGTCYRGDFEKRLKAVLKEVTK----SNGQIILFI 368 (982)
Q Consensus 293 iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~~~~g~~e~~l~~l~~~~~~----~~~~~IL~I 368 (982)
+||.||||||||+++++||+.+.-. ..+......+++++..++. ++|-++..+.+..+|+.+.. .+.-+.++|
T Consensus 180 iLlhGPPGTGKTSLCKaLaQkLSIR-~~~~y~~~~liEinshsLF--SKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLI 256 (423)
T KOG0744|consen 180 ILLHGPPGTGKTSLCKALAQKLSIR-TNDRYYKGQLIEINSHSLF--SKWFSESGKLVAKMFQKIQELVEDRGNLVFVLI 256 (423)
T ss_pred EEEeCCCCCChhHHHHHHHHhheee-ecCccccceEEEEehhHHH--HHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 5677999999999999999987421 2233457789999999888 45767666666666665553 233467899
Q ss_pred ccchhhhhCCC-------CCchhhHHHHHHhhhc----CCCeEEEEecCchhHhhhhhcChHHHhccc-eEEecCCCHHH
Q 002012 369 DELHTIIGAGN-------QSGAMDASNMLKPMLG----RGELRCIGATTLNEYRNYIEKDPALERRFQ-QVFCDQPSVEN 436 (982)
Q Consensus 369 DEi~~l~~~~~-------~~~~~~~~~~L~~~le----~g~i~vI~at~~~~~~~~~~~d~al~rRf~-~i~i~~Ps~~e 436 (982)
||++.+..++. ...+..+.|.|+.-++ ..++.+.+|+|-.+ .+|.||..|-+ ..++.+|+.+.
T Consensus 257 DEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~-----siD~AfVDRADi~~yVG~Pt~~a 331 (423)
T KOG0744|consen 257 DEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTD-----SIDVAFVDRADIVFYVGPPTAEA 331 (423)
T ss_pred HHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHH-----HHHHHhhhHhhheeecCCccHHH
Confidence 99999976542 1223567788877776 34667667777666 79999999998 78999999999
Q ss_pred HHHHHHHHHHHH
Q 002012 437 TISILRGLRERY 448 (982)
Q Consensus 437 ~~~IL~~~~~~~ 448 (982)
+.+|++...+.+
T Consensus 332 i~~IlkscieEL 343 (423)
T KOG0744|consen 332 IYEILKSCIEEL 343 (423)
T ss_pred HHHHHHHHHHHH
Confidence 999998776654
No 261
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.37 E-value=2.4e-11 Score=126.42 Aligned_cols=190 Identities=22% Similarity=0.286 Sum_probs=136.2
Q ss_pred CCCCCcccchHHHHHHHH----HhccCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEeccccccccc
Q 002012 266 GKLDPVIGRDDEIRRCIQ----ILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGTC 341 (982)
Q Consensus 266 ~~l~~liG~~~~i~~l~~----~L~~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~~ 341 (982)
-.+++++|.+.+.+.+++ .+...+.+|+||+|+.|||||++++++..++... +.++++++-..+.
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~-------GLRlIev~k~~L~---- 92 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQ-------GLRLIEVSKEDLG---- 92 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhc-------CceEEEECHHHhc----
Confidence 456789999987777765 4555788999999999999999999999988543 7899998755554
Q ss_pred ccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcC------CCeEEEEecCchhHhhhh-
Q 002012 342 YRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGR------GELRCIGATTLNEYRNYI- 414 (982)
Q Consensus 342 ~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~------g~i~vI~at~~~~~~~~~- 414 (982)
.+..+++.+.....+.|||+|++- +..+ ..-...|+.+|+. .++.+.+|+|.-...+..
T Consensus 93 -------~l~~l~~~l~~~~~kFIlf~DDLs--Fe~~-----d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~E~~ 158 (249)
T PF05673_consen 93 -------DLPELLDLLRDRPYKFILFCDDLS--FEEG-----DTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVPESF 158 (249)
T ss_pred -------cHHHHHHHHhcCCCCEEEEecCCC--CCCC-----cHHHHHHHHHhcCccccCCCcEEEEEecchhhccchhh
Confidence 356777777766778899999975 2222 2344678888873 378888888875422211
Q ss_pred -h--------cC--------hHHHhccc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccCh-HHHHHHHHHhhhhhccC
Q 002012 415 -E--------KD--------PALERRFQ-QVFCDQPSVENTISILRGLRERYELHHGVKISD-SALVSAAVLADRYITER 475 (982)
Q Consensus 415 -~--------~d--------~al~rRf~-~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~-~~l~~~~~~s~r~i~~~ 475 (982)
+ ++ -+|..||. .|.|.+|+.++..+|++.++++ +++.+++ +....+..++-. .+.
T Consensus 159 ~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~----~g~~~~~e~l~~~Al~wa~~--rg~ 232 (249)
T PF05673_consen 159 SDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAER----YGLELDEEELRQEALQWALR--RGG 232 (249)
T ss_pred hhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHHHHH--cCC
Confidence 1 11 25777997 8999999999999999999988 5888885 333444444432 234
Q ss_pred CCcchhhHHHH
Q 002012 476 FLPDKAIDLVD 486 (982)
Q Consensus 476 ~~p~~a~~lld 486 (982)
+.++.|.++++
T Consensus 233 RSGRtA~QF~~ 243 (249)
T PF05673_consen 233 RSGRTARQFID 243 (249)
T ss_pred CCHHHHHHHHH
Confidence 45666666654
No 262
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.37 E-value=1.5e-11 Score=138.28 Aligned_cols=183 Identities=19% Similarity=0.359 Sum_probs=124.6
Q ss_pred cccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCC--ceEEEecccccccccccc
Q 002012 663 KRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTEN--ALVRIDMSEYMEKHSVSR 740 (982)
Q Consensus 663 ~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~--~~v~i~~s~~~~~~~~~~ 740 (982)
.+++||+++++.+...+... . .++++|+||||||||++++.+++.+++.+. .++.+++++.......
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~-------~--~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~-- 85 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEK-------N--MPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDERGIDVI-- 85 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCC-------C--CCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccccchHHH--
Confidence 56889999999988887521 1 125899999999999999999999865432 3444443321100000
Q ss_pred ccCCCCCccccccCCchhHHHhh-----CCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEEecCC
Q 002012 741 LVGAPPGYVGYEEGGQLTEVVRR-----RPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNI 815 (982)
Q Consensus 741 l~g~~~g~vg~~~~~~l~~~l~~-----~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~ 815 (982)
...+.+.... .+..||+|||+|.++...++.|+++++... .++.+|+++|.
T Consensus 86 -------------~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~-----------~~~~lIl~~~~ 141 (319)
T PRK00440 86 -------------RNKIKEFARTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYS-----------QNTRFILSCNY 141 (319)
T ss_pred -------------HHHHHHHHhcCCCCCCCceEEEEeCcccCCHHHHHHHHHHHhcCC-----------CCCeEEEEeCC
Confidence 0011122211 335699999999999999999999998522 24678888874
Q ss_pred ChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHHHHHHHHHhCCCCcc
Q 002012 816 GSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLH 895 (982)
Q Consensus 816 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~~~~~~~~~~~l~ 895 (982)
... +.+++.+|+ ..+.|+|++.+++..++...+.+ .+ +.
T Consensus 142 ~~~-------------------------------l~~~l~sr~-~~~~~~~l~~~ei~~~l~~~~~~-------~~--~~ 180 (319)
T PRK00440 142 SSK-------------------------------IIDPIQSRC-AVFRFSPLKKEAVAERLRYIAEN-------EG--IE 180 (319)
T ss_pred ccc-------------------------------cchhHHHHh-heeeeCCCCHHHHHHHHHHHHHH-------cC--CC
Confidence 321 345677888 47999999999999888877764 34 67
Q ss_pred CCHHHHHHHHhcCCCCCCCchHHHHHHHH
Q 002012 896 YTKEAVTLLGILGFDPNFGARPVKRVIQQ 924 (982)
Q Consensus 896 i~~~a~~~L~~~~~~~~~gaR~L~~~i~~ 924 (982)
++++++++|+..+ .+ ..|.+.+.++.
T Consensus 181 i~~~al~~l~~~~-~g--d~r~~~~~l~~ 206 (319)
T PRK00440 181 ITDDALEAIYYVS-EG--DMRKAINALQA 206 (319)
T ss_pred CCHHHHHHHHHHc-CC--CHHHHHHHHHH
Confidence 8999999999863 22 23555555543
No 263
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.37 E-value=1.3e-11 Score=140.25 Aligned_cols=186 Identities=24% Similarity=0.337 Sum_probs=125.5
Q ss_pred cccchHHHHHHHHHhcc-----------C-------CCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEe
Q 002012 271 VIGRDDEIRRCIQILSR-----------R-------TKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLD 332 (982)
Q Consensus 271 liG~~~~i~~l~~~L~~-----------~-------~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~ 332 (982)
+|||++.++.+..++.+ . .+.|+||+||||||||++|+.||..+ +.++..++
T Consensus 79 ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l----------~~pf~~~d 148 (413)
T TIGR00382 79 VIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARIL----------NVPFAIAD 148 (413)
T ss_pred ecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhc----------CCCeEEec
Confidence 79999988888766521 1 14689999999999999999999887 67788888
Q ss_pred ccccccccccccc-HHHHHHHHHHHH----HhcCCCeEEEEccchhhhhCCCCC------chhhHHHHHHhhhcC-----
Q 002012 333 MASLVAGTCYRGD-FEKRLKAVLKEV----TKSNGQIILFIDELHTIIGAGNQS------GAMDASNMLKPMLGR----- 396 (982)
Q Consensus 333 ~~~l~~~~~~~g~-~e~~l~~l~~~~----~~~~~~~IL~IDEi~~l~~~~~~~------~~~~~~~~L~~~le~----- 396 (982)
++.+.. ..|.|. .+..+..++... .. ..+.||||||+|.+.....+. ....+++.|+++|+.
T Consensus 149 a~~L~~-~gyvG~d~e~~L~~~~~~~~~~l~~-a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v 226 (413)
T TIGR00382 149 ATTLTE-AGYVGEDVENILLKLLQAADYDVEK-AQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANV 226 (413)
T ss_pred hhhccc-cccccccHHHHHHHHHHhCcccHHh-cccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceec
Confidence 777653 347776 344444444321 12 234599999999998643211 113578888888851
Q ss_pred ----C------CeEEEEecCch-------------------------------------hHhh--------hhhcChHHH
Q 002012 397 ----G------ELRCIGATTLN-------------------------------------EYRN--------YIEKDPALE 421 (982)
Q Consensus 397 ----g------~i~vI~at~~~-------------------------------------~~~~--------~~~~d~al~ 421 (982)
| +.++|.|+|-- ++.+ .+.+.|+|.
T Consensus 227 ~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEfl 306 (413)
T TIGR00382 227 PPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFI 306 (413)
T ss_pred ccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHh
Confidence 1 22455555440 0000 112569999
Q ss_pred hccc-eEEecCCCHHHHHHHHHH----HHHHHhh-----hcCCccChHHHHHHHHHh
Q 002012 422 RRFQ-QVFCDQPSVENTISILRG----LRERYEL-----HHGVKISDSALVSAAVLA 468 (982)
Q Consensus 422 rRf~-~i~i~~Ps~~e~~~IL~~----~~~~~~~-----~~~v~i~~~~l~~~~~~s 468 (982)
.|++ .+.+.+.+.+++..|+.. +.++|.. ...+.++++++.++++.+
T Consensus 307 gRld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~ 363 (413)
T TIGR00382 307 GRLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKA 363 (413)
T ss_pred CCCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhC
Confidence 9998 556667799999999864 5666654 234678999999998874
No 264
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.37 E-value=2.8e-12 Score=161.41 Aligned_cols=187 Identities=13% Similarity=0.152 Sum_probs=122.4
Q ss_pred CceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEecccccccccc---ccc--cCC-----------------------
Q 002012 693 IASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSV---SRL--VGA----------------------- 744 (982)
Q Consensus 693 ~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~---~~l--~g~----------------------- 744 (982)
...+||+||||||||++|+++|... +.||+.+.++++.+.... ... +|.
T Consensus 1630 PKGILLiGPPGTGKTlLAKALA~es---~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~n 1706 (2281)
T CHL00206 1630 SRGILVIGSIGTGRSYLVKYLATNS---YVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMMN 1706 (2281)
T ss_pred CCceEEECCCCCCHHHHHHHHHHhc---CCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhhcc
Confidence 3359999999999999999999987 899999999998753200 000 110
Q ss_pred -CCCccccccC----CchhHHHhhCCCeEEEEccccccCHH-----HHHHHHHhhhcCceecCCCcEEecccEEEEEecC
Q 002012 745 -PPGYVGYEEG----GQLTEVVRRRPYSVVLFDEIEKAHQD-----VFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSN 814 (982)
Q Consensus 745 -~~g~vg~~~~----~~l~~~l~~~~~~Vl~lDEidkl~~~-----~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn 814 (982)
..++.+..++ +.+++.+++..+|||+|||||.+... .++.|+..|+...-. ....+++||+|||
T Consensus 1707 ~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~~------~s~~~VIVIAATN 1780 (2281)
T CHL00206 1707 ALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCER------CSTRNILVIASTH 1780 (2281)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCccceehHHHHHHHhcccccc------CCCCCEEEEEeCC
Confidence 0111222221 34677888888999999999999754 367777777632100 1124689999999
Q ss_pred CChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHH--hccccccccCCCChhHHHHHHHHHHHHHHHHHHhCCC
Q 002012 815 IGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFL--NRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKI 892 (982)
Q Consensus 815 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll--~Rid~ii~F~pl~~~~l~~il~~~l~~~~~~~~~~~~ 892 (982)
.+.. ++|+|+ +|||..|.++.++..+.++++...+.. ++.
T Consensus 1781 RPD~-------------------------------LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~t-------kg~ 1822 (2281)
T CHL00206 1781 IPQK-------------------------------VDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYT-------RGF 1822 (2281)
T ss_pred Cccc-------------------------------CCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhh-------cCC
Confidence 7643 788888 599999999988887777766543321 232
Q ss_pred CccCCHHHHHHHHhcCCCCCCCchHHHHHHHHHHHH
Q 002012 893 DLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVEN 928 (982)
Q Consensus 893 ~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~l~~ 928 (982)
.+.-+..-.+.|+.. .+.|.+++|..++..++.-
T Consensus 1823 ~L~~~~vdl~~LA~~--T~GfSGADLanLvNEAali 1856 (2281)
T CHL00206 1823 HLEKKMFHTNGFGSI--TMGSNARDLVALTNEALSI 1856 (2281)
T ss_pred CCCcccccHHHHHHh--CCCCCHHHHHHHHHHHHHH
Confidence 222111123455553 3556678888877764433
No 265
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.36 E-value=2.3e-12 Score=137.09 Aligned_cols=155 Identities=17% Similarity=0.314 Sum_probs=107.1
Q ss_pred CceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccccccccCCCCCccccccCCchhHHHhh-----CCCe
Q 002012 693 IASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRLVGAPPGYVGYEEGGQLTEVVRR-----RPYS 767 (982)
Q Consensus 693 ~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~-----~~~~ 767 (982)
+.+++|+||||||||++|+.|+...-.....|+.+....-.. .+-+.+++..++ ....
T Consensus 162 ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~t-----------------~dvR~ife~aq~~~~l~krkT 224 (554)
T KOG2028|consen 162 IPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAKT-----------------NDVRDIFEQAQNEKSLTKRKT 224 (554)
T ss_pred CCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccch-----------------HHHHHHHHHHHHHHhhhccee
Confidence 446999999999999999999987633333355443322110 011112222211 2235
Q ss_pred EEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEEecC-CChHHHHHhhhhcccchHHHHHHHHHHHHHHH
Q 002012 768 VVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSN-IGSHYILETLQSVQDSKEAVYEVMKKQVVELA 846 (982)
Q Consensus 768 Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 846 (982)
|||||||+.++...|+.||..+|+|. +++|.+|+ .++..
T Consensus 225 ilFiDEiHRFNksQQD~fLP~VE~G~-------------I~lIGATTENPSFq--------------------------- 264 (554)
T KOG2028|consen 225 ILFIDEIHRFNKSQQDTFLPHVENGD-------------ITLIGATTENPSFQ--------------------------- 264 (554)
T ss_pred EEEeHHhhhhhhhhhhcccceeccCc-------------eEEEecccCCCccc---------------------------
Confidence 99999999999999999999999875 56777655 33321
Q ss_pred HhhcChHHHhccccccccCCCChhHHHHHHHHHHHHHHHHHH-hC---CCCccCCHHHHHHHHhcC
Q 002012 847 RQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLK-QK---KIDLHYTKEAVTLLGILG 908 (982)
Q Consensus 847 ~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~~~~~~-~~---~~~l~i~~~a~~~L~~~~ 908 (982)
+..+|++|| .++.+.+|..+++..|+.+-+.-+.+--+ .. +..+.+++.++++|+..+
T Consensus 265 ---ln~aLlSRC-~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~ls 326 (554)
T KOG2028|consen 265 ---LNAALLSRC-RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLS 326 (554)
T ss_pred ---hhHHHHhcc-ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhc
Confidence 466899999 68999999999999999998776543222 11 123568999999999763
No 266
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.36 E-value=2.1e-12 Score=126.69 Aligned_cols=114 Identities=31% Similarity=0.540 Sum_probs=78.8
Q ss_pred eEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccccccccCCCC---CccccccCCchhHHHhhCCCeEEEE
Q 002012 695 SFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRLVGAPP---GYVGYEEGGQLTEVVRRRPYSVVLF 771 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l~g~~~---g~vg~~~~~~l~~~l~~~~~~Vl~l 771 (982)
+++|+||||||||++|+.+|+.+ +.++..+.++...+.. .++|... +...+. .+.+..+++ .++|++|
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~---~~~~~~i~~~~~~~~~---dl~g~~~~~~~~~~~~-~~~l~~a~~--~~~il~l 71 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALL---GRPVIRINCSSDTTEE---DLIGSYDPSNGQFEFK-DGPLVRAMR--KGGILVL 71 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH---TCEEEEEE-TTTSTHH---HHHCEEET-TTTTCEE-E-CCCTTHH--EEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHh---hcceEEEEeccccccc---cceeeeeecccccccc-ccccccccc--ceeEEEE
Confidence 48999999999999999999999 7889999998865433 3444321 111111 123444444 4569999
Q ss_pred ccccccCHHHHHHHHHhhhcCceecCCC-cEEecc-------cEEEEEecCCCh
Q 002012 772 DEIEKAHQDVFNILLQLLDDGRITDSQG-RTVSFT-------NCVVIMTSNIGS 817 (982)
Q Consensus 772 DEidkl~~~~~~~Ll~~le~g~~~d~~g-~~~~~~-------~~iiI~tsn~~~ 817 (982)
||++++++++++.|+.+++++++....+ ...... +.+||+|+|...
T Consensus 72 DEin~a~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~ 125 (139)
T PF07728_consen 72 DEINRAPPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRD 125 (139)
T ss_dssp SSCGG--HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST
T ss_pred CCcccCCHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCC
Confidence 9999999999999999999988775443 333332 499999999765
No 267
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.35 E-value=4.7e-11 Score=136.17 Aligned_cols=203 Identities=15% Similarity=0.155 Sum_probs=123.3
Q ss_pred CcccchHHHHHHHHHhccCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEe-----cccccccc----
Q 002012 270 PVIGRDDEIRRCIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLD-----MASLVAGT---- 340 (982)
Q Consensus 270 ~liG~~~~i~~l~~~L~~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~-----~~~l~~~~---- 340 (982)
.++|+++.|+.+..++.. ..|+||+||||||||++|++|+..+.... .+..+. .+++.+..
T Consensus 21 ~i~gre~vI~lll~aala--g~hVLL~GpPGTGKT~LAraLa~~~~~~~--------~F~~~~~~fttp~DLfG~l~i~~ 90 (498)
T PRK13531 21 GLYERSHAIRLCLLAALS--GESVFLLGPPGIAKSLIARRLKFAFQNAR--------AFEYLMTRFSTPEEVFGPLSIQA 90 (498)
T ss_pred hccCcHHHHHHHHHHHcc--CCCEEEECCCChhHHHHHHHHHHHhcccC--------cceeeeeeecCcHHhcCcHHHhh
Confidence 489999999999998875 45999999999999999999999873321 122221 12222110
Q ss_pred -cccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCCC-----------e-EEEEecCc
Q 002012 341 -CYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRGE-----------L-RCIGATTL 407 (982)
Q Consensus 341 -~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g~-----------i-~vI~at~~ 407 (982)
+..|.+.....+. +.. .-+||+|||+.+. ...++.|+.+|+.+. . .+++|||+
T Consensus 91 ~~~~g~f~r~~~G~---L~~---A~lLfLDEI~ras--------p~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~ 156 (498)
T PRK13531 91 LKDEGRYQRLTSGY---LPE---AEIVFLDEIWKAG--------PAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNE 156 (498)
T ss_pred hhhcCchhhhcCCc---ccc---ccEEeecccccCC--------HHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCC
Confidence 0011111100000 101 1289999999875 677888999995432 2 34455553
Q ss_pred hhHhhhhhcChHHHhccc-eEEecCCC-HHHHHHHHHHHHH---------------HHh----hhcCCccChHHHHHHHH
Q 002012 408 NEYRNYIEKDPALERRFQ-QVFCDQPS-VENTISILRGLRE---------------RYE----LHHGVKISDSALVSAAV 466 (982)
Q Consensus 408 ~~~~~~~~~d~al~rRf~-~i~i~~Ps-~~e~~~IL~~~~~---------------~~~----~~~~v~i~~~~l~~~~~ 466 (982)
-+ ..-...+++..||. .+.+++|+ .++..+||..-.. .+. .-..+.+++.+.++++.
T Consensus 157 LP--E~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~v~eyI~~ 234 (498)
T PRK13531 157 LP--EADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDHVFELIFQ 234 (498)
T ss_pred Cc--ccCCchHHhHhhEEEEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHHHHHHHHH
Confidence 22 11123468999996 67787786 4555777753211 000 02457788888888888
Q ss_pred Hhhhhh--c--cCCCcchhhHHHHHHHHHhhhhccC
Q 002012 467 LADRYI--T--ERFLPDKAIDLVDEAAAKLKMEITS 498 (982)
Q Consensus 467 ~s~r~i--~--~~~~p~~a~~lld~a~~~~~~~~~~ 498 (982)
+....- . ....|+..+.++.-+.+.+-+....
T Consensus 235 L~~~lr~~r~~~~~SpR~~~~l~~~akA~A~l~GR~ 270 (498)
T PRK13531 235 LRQQLDALPNAPYVSDRRWKKAIRLLQASAFFSGRD 270 (498)
T ss_pred HHHHHhcCCCCCCcCcHHHHHHHHHHHHHHHHCCCC
Confidence 864211 1 1256777888887777777766653
No 268
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.35 E-value=1.7e-11 Score=131.12 Aligned_cols=163 Identities=17% Similarity=0.196 Sum_probs=109.8
Q ss_pred eEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccccccccCCCCCccccccCCchhHHHhhCCCeEEEEccc
Q 002012 695 SFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEI 774 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~~~~~Vl~lDEi 774 (982)
+++|+||+|||||++++++++.+...+..+..+++..... +. ..+.+.+... .+|+|||+
T Consensus 47 ~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~-------------~~-----~~~~~~~~~~--dlliiDdi 106 (235)
T PRK08084 47 YIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAW-------------FV-----PEVLEGMEQL--SLVCIDNI 106 (235)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhh-------------hh-----HHHHHHhhhC--CEEEEeCh
Confidence 5999999999999999999998754444555555543211 00 0122333332 59999999
Q ss_pred cccC--HHHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcCh
Q 002012 775 EKAH--QDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRP 852 (982)
Q Consensus 775 dkl~--~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p 852 (982)
+.+. +..+..|+.++.... + ..++.+|+||+..+..+. .+.|
T Consensus 107 ~~~~~~~~~~~~lf~l~n~~~--e-------~g~~~li~ts~~~p~~l~---------------------------~~~~ 150 (235)
T PRK08084 107 ECIAGDELWEMAIFDLYNRIL--E-------SGRTRLLITGDRPPRQLN---------------------------LGLP 150 (235)
T ss_pred hhhcCCHHHHHHHHHHHHHHH--H-------cCCCeEEEeCCCChHHcC---------------------------cccH
Confidence 9885 445555555543210 0 012457778886654221 1468
Q ss_pred HHHhccc--cccccCCCChhHHHHHHHHHHHHHHHHHHhCCCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHHH
Q 002012 853 EFLNRID--EYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQL 925 (982)
Q Consensus 853 ~ll~Rid--~ii~F~pl~~~~l~~il~~~l~~~~~~~~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~ 925 (982)
+|.+|+. .++.+.|++.+++.++++..... ++ +.++++++++|+.+ ++. .+|.+..+++++
T Consensus 151 ~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~-------~~--~~l~~~v~~~L~~~-~~~--d~r~l~~~l~~l 213 (235)
T PRK08084 151 DLASRLDWGQIYKLQPLSDEEKLQALQLRARL-------RG--FELPEDVGRFLLKR-LDR--EMRTLFMTLDQL 213 (235)
T ss_pred HHHHHHhCCceeeecCCCHHHHHHHHHHHHHH-------cC--CCCCHHHHHHHHHh-hcC--CHHHHHHHHHHH
Confidence 9999995 58999999999999998764433 34 88999999999997 343 348888888884
No 269
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=99.35 E-value=2e-11 Score=129.10 Aligned_cols=208 Identities=14% Similarity=0.168 Sum_probs=154.0
Q ss_pred HHhhhhhHHHhhcCCCCCcccchHHHHHHHHHhccCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEe
Q 002012 253 EKYGNDLTELARSGKLDPVIGRDDEIRRCIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLD 332 (982)
Q Consensus 253 ~~~~~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~ 332 (982)
.++..+|.+++||..+++++++++.+..+.....-.+.+|+|+|||||+|||+...+.|..+.+.. -.+..+..++
T Consensus 25 ~~~~~pwvekyrP~~l~dv~~~~ei~st~~~~~~~~~lPh~L~YgPPGtGktsti~a~a~~ly~~~----~~~~m~leln 100 (360)
T KOG0990|consen 25 PQYPQPWVEKYRPPFLGIVIKQEPIWSTENRYSGMPGLPHLLFYGPPGTGKTSTILANARDFYSPH----PTTSMLLELN 100 (360)
T ss_pred cccCCCCccCCCCchhhhHhcCCchhhHHHHhccCCCCCcccccCCCCCCCCCchhhhhhhhcCCC----CchhHHHHhh
Confidence 457788999999999999999999888888876667777999999999999999999999885421 1122345555
Q ss_pred cccccccccccccHHHHHHHHHHHHHh------cCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcC--CCeEEEEe
Q 002012 333 MASLVAGTCYRGDFEKRLKAVLKEVTK------SNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGR--GELRCIGA 404 (982)
Q Consensus 333 ~~~l~~~~~~~g~~e~~l~~l~~~~~~------~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~--g~i~vI~a 404 (982)
.++-.+ .+-....+ ..|...+. ......+++||+|.+. .+++|.|++.++. .+++|+..
T Consensus 101 aSd~rg----id~vr~qi-~~fast~~~~~fst~~~fKlvILDEADaMT--------~~AQnALRRviek~t~n~rF~ii 167 (360)
T KOG0990|consen 101 ASDDRG----IDPVRQQI-HLFASTQQPTTYSTHAAFKLVILDEADAMT--------RDAQNALRRVIEKYTANTRFATI 167 (360)
T ss_pred ccCccC----CcchHHHH-HHHHhhccceeccccCceeEEEecchhHhh--------HHHHHHHHHHHHHhccceEEEEe
Confidence 444321 11122211 23332321 1255689999999997 8899999998884 56788878
Q ss_pred cCchhHhhhhhcChHHHhccceEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCCcchhhHH
Q 002012 405 TTLNEYRNYIEKDPALERRFQQVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLPDKAIDL 484 (982)
Q Consensus 405 t~~~~~~~~~~~d~al~rRf~~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~p~~a~~l 484 (982)
+|+.. .+.|++++||+...+.+.+..+...++.++++. ....++++...+++.++.+.+ .++.+.
T Consensus 168 ~n~~~-----ki~pa~qsRctrfrf~pl~~~~~~~r~shi~e~----e~~~~~~~~~~a~~r~s~gDm------r~a~n~ 232 (360)
T KOG0990|consen 168 SNPPQ-----KIHPAQQSRCTRFRFAPLTMAQQTERQSHIRES----EQKETNPEGYSALGRLSVGDM------RVALNY 232 (360)
T ss_pred ccChh-----hcCchhhcccccCCCCCCChhhhhhHHHHHHhc----chhhcCHHHHHHHHHHhHHHH------HHHHHH
Confidence 88877 789999999999999998988888888887776 456778888888888776544 566676
Q ss_pred HHHHHHHh
Q 002012 485 VDEAAAKL 492 (982)
Q Consensus 485 ld~a~~~~ 492 (982)
|+......
T Consensus 233 Lqs~~~~~ 240 (360)
T KOG0990|consen 233 LQSILKKV 240 (360)
T ss_pred HHHHHHHh
Confidence 66555443
No 270
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.34 E-value=5.4e-12 Score=126.90 Aligned_cols=170 Identities=15% Similarity=0.236 Sum_probs=119.8
Q ss_pred hcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCC--CceEEEeccccccccccc
Q 002012 662 HKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTE--NALVRIDMSEYMEKHSVS 739 (982)
Q Consensus 662 ~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~--~~~v~i~~s~~~~~~~~~ 739 (982)
..+|+|.++.+..+.-..+ .+..+|++|.||||||||+.+.+||+.|.|.. ..+..+|.|+-..-+.+.
T Consensus 26 l~dIVGNe~tv~rl~via~---------~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGIDvVR 96 (333)
T KOG0991|consen 26 LQDIVGNEDTVERLSVIAK---------EGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDVVR 96 (333)
T ss_pred HHHhhCCHHHHHHHHHHHH---------cCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccHHHH
Confidence 3679999999998877665 33445799999999999999999999997642 345566666532111000
Q ss_pred cccCCCCCccccccCCchhHHHh------hCCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEEec
Q 002012 740 RLVGAPPGYVGYEEGGQLTEVVR------RRPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTS 813 (982)
Q Consensus 740 ~l~g~~~g~vg~~~~~~l~~~l~------~~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~ts 813 (982)
+.+..... ...+.||++||+|.|....|.+|...||=. -+.++|.+++
T Consensus 97 ---------------n~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlRRtMEiy-----------S~ttRFalaC 150 (333)
T KOG0991|consen 97 ---------------NKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRRTMEIY-----------SNTTRFALAC 150 (333)
T ss_pred ---------------HHHHHHHHhhccCCCCceeEEEeeccchhhhHHHHHHHHHHHHH-----------cccchhhhhh
Confidence 11111111 134569999999999999999999999842 2458899999
Q ss_pred CCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHHHHHHHHHhCCCC
Q 002012 814 NIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKID 893 (982)
Q Consensus 814 n~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~~~~~~~~~~~ 893 (982)
|...+ +-.++.+|| .++.|..++..++..-+....+ ..+
T Consensus 151 N~s~K-------------------------------IiEPIQSRC-AiLRysklsd~qiL~Rl~~v~k-------~Ek-- 189 (333)
T KOG0991|consen 151 NQSEK-------------------------------IIEPIQSRC-AILRYSKLSDQQILKRLLEVAK-------AEK-- 189 (333)
T ss_pred cchhh-------------------------------hhhhHHhhh-HhhhhcccCHHHHHHHHHHHHH-------HhC--
Confidence 97543 234678999 6999999999887544443333 234
Q ss_pred ccCCHHHHHHHHhc
Q 002012 894 LHYTKEAVTLLGIL 907 (982)
Q Consensus 894 l~i~~~a~~~L~~~ 907 (982)
+.++++.++.+...
T Consensus 190 v~yt~dgLeaiift 203 (333)
T KOG0991|consen 190 VNYTDDGLEAIIFT 203 (333)
T ss_pred CCCCcchHHHhhhh
Confidence 77888888887653
No 271
>PRK06893 DNA replication initiation factor; Validated
Probab=99.34 E-value=2.1e-11 Score=129.96 Aligned_cols=163 Identities=13% Similarity=0.239 Sum_probs=112.4
Q ss_pred eEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccccccccCCCCCccccccCCchhHHHhhCCCeEEEEccc
Q 002012 695 SFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEI 774 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~~~~~Vl~lDEi 774 (982)
+++|+||||||||++++++++.+...+.....+++...... . ..+.+.+. ...+|+|||+
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~~--------------~----~~~~~~~~--~~dlLilDDi 100 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQYF--------------S----PAVLENLE--QQDLVCLDDL 100 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhhh--------------h----HHHHhhcc--cCCEEEEeCh
Confidence 48999999999999999999988554555555555432100 0 01222222 2359999999
Q ss_pred cccC--HHHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcCh
Q 002012 775 EKAH--QDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRP 852 (982)
Q Consensus 775 dkl~--~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p 852 (982)
+... +..+..|+.+++... +. ...++|+|+|..+..+. ...|
T Consensus 101 ~~~~~~~~~~~~l~~l~n~~~--~~-------~~~illits~~~p~~l~---------------------------~~~~ 144 (229)
T PRK06893 101 QAVIGNEEWELAIFDLFNRIK--EQ-------GKTLLLISADCSPHALS---------------------------IKLP 144 (229)
T ss_pred hhhcCChHHHHHHHHHHHHHH--Hc-------CCcEEEEeCCCChHHcc---------------------------ccch
Confidence 9874 456667777776421 10 23567788887654221 1346
Q ss_pred HHHhccc--cccccCCCChhHHHHHHHHHHHHHHHHHHhCCCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHHH
Q 002012 853 EFLNRID--EYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQL 925 (982)
Q Consensus 853 ~ll~Rid--~ii~F~pl~~~~l~~il~~~l~~~~~~~~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~ 925 (982)
++.+|+. .++.+.|++.+++.+|++..+.. ++ +.++++++++|+.+ ++. ..|.+..+++++
T Consensus 145 ~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~-------~~--l~l~~~v~~~L~~~-~~~--d~r~l~~~l~~l 207 (229)
T PRK06893 145 DLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQ-------RG--IELSDEVANFLLKR-LDR--DMHTLFDALDLL 207 (229)
T ss_pred hHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHH-------cC--CCCCHHHHHHHHHh-ccC--CHHHHHHHHHHH
Confidence 7888874 47889999999999999887754 33 89999999999997 333 348888888874
No 272
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.34 E-value=6.7e-12 Score=136.61 Aligned_cols=111 Identities=23% Similarity=0.422 Sum_probs=74.9
Q ss_pred eEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHH
Q 002012 767 SVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELA 846 (982)
Q Consensus 767 ~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 846 (982)
+||||||++.++.+.+..|.++||+.- .-++|++||.+...+... ....
T Consensus 280 GVLFIDEvHmLDiEcFsfLnralEs~~------------sPiiIlATNRg~~~irGt--~~~s----------------- 328 (398)
T PF06068_consen 280 GVLFIDEVHMLDIECFSFLNRALESEL------------SPIIILATNRGITKIRGT--DIIS----------------- 328 (398)
T ss_dssp -EEEEESGGGSBHHHHHHHHHHHTSTT--------------EEEEEES-SEEE-BTT--S-EE-----------------
T ss_pred ceEEecchhhccHHHHHHHHHHhcCCC------------CcEEEEecCceeeeccCc--cCcC-----------------
Confidence 499999999999999999999999632 258999999876543321 0000
Q ss_pred HhhcChHHHhccccccccCCCChhHHHHHHHHHHHHHHHHHHhCCCCccCCHHHHHHHHhcCCCCCCCchHHHHHHH
Q 002012 847 RQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQ 923 (982)
Q Consensus 847 ~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~~~~~~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~ 923 (982)
-..++.+|++|+ .+|+..|++.+++.+|+...++. .+ +.++++|+++|...+.. .+|+.+++
T Consensus 329 phGiP~DlLDRl-lII~t~py~~~ei~~Il~iR~~~-------E~--v~i~~~al~~L~~ig~~-----~SLRYAiq 390 (398)
T PF06068_consen 329 PHGIPLDLLDRL-LIIRTKPYSEEEIKQILKIRAKE-------ED--VEISEDALDLLTKIGVE-----TSLRYAIQ 390 (398)
T ss_dssp ETT--HHHHTTE-EEEEE----HHHHHHHHHHHHHH-------CT----B-HHHHHHHHHHHHH-----S-HHHHHH
T ss_pred CCCCCcchHhhc-EEEECCCCCHHHHHHHHHhhhhh-------hc--CcCCHHHHHHHHHHhhh-----ccHHHHHH
Confidence 134788999999 79999999999999999988876 44 89999999999986433 25666655
No 273
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.34 E-value=4.5e-12 Score=142.39 Aligned_cols=183 Identities=19% Similarity=0.320 Sum_probs=119.2
Q ss_pred cccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCC----ceEEE-e---cccc--
Q 002012 663 KRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTEN----ALVRI-D---MSEY-- 732 (982)
Q Consensus 663 ~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~----~~v~i-~---~s~~-- 732 (982)
..++||++++..+..++...+ .| ..+||+||+|+|||++|+.+|+.+++... +.... . |..+
T Consensus 23 ~~l~Gh~~a~~~L~~a~~~gr-------l~-ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~ 94 (351)
T PRK09112 23 TRLFGHEEAEAFLAQAYREGK-------LH-HALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQ 94 (351)
T ss_pred hhccCcHHHHHHHHHHHHcCC-------CC-eeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHH
Confidence 679999999999999887432 12 23999999999999999999999976321 11100 1 1111
Q ss_pred ccccccccc--cCCCC--------CccccccCCchhHHHhh----CCCeEEEEccccccCHHHHHHHHHhhhcCceecCC
Q 002012 733 MEKHSVSRL--VGAPP--------GYVGYEEGGQLTEVVRR----RPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQ 798 (982)
Q Consensus 733 ~~~~~~~~l--~g~~~--------g~vg~~~~~~l~~~l~~----~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~ 798 (982)
.....+..+ +..+. ..++.++.+.+.+.+.. ..+.|++|||+|.|++..+|+|++.||+..
T Consensus 95 i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp----- 169 (351)
T PRK09112 95 IAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPP----- 169 (351)
T ss_pred HHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCC-----
Confidence 000111111 11110 01122222334444443 346799999999999999999999999721
Q ss_pred CcEEecccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHH
Q 002012 799 GRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEI 878 (982)
Q Consensus 799 g~~~~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~ 878 (982)
.+++||+.|+.... +.|.+.+|| ..+.|+|++.+++.+++..
T Consensus 170 ------~~~~fiLit~~~~~-------------------------------llptIrSRc-~~i~l~pl~~~~~~~~L~~ 211 (351)
T PRK09112 170 ------ARALFILISHSSGR-------------------------------LLPTIRSRC-QPISLKPLDDDELKKALSH 211 (351)
T ss_pred ------CCceEEEEECChhh-------------------------------ccHHHHhhc-cEEEecCCCHHHHHHHHHH
Confidence 35777777765432 568999999 6999999999999999876
Q ss_pred HHHHHHHHHHhCCCCccCCHHHHHHHHhc
Q 002012 879 QMNRVKDRLKQKKIDLHYTKEAVTLLGIL 907 (982)
Q Consensus 879 ~l~~~~~~~~~~~~~l~i~~~a~~~L~~~ 907 (982)
... ...+++++.+.+...
T Consensus 212 ~~~-----------~~~~~~~~~~~i~~~ 229 (351)
T PRK09112 212 LGS-----------SQGSDGEITEALLQR 229 (351)
T ss_pred hhc-----------ccCCCHHHHHHHHHH
Confidence 211 122667776666654
No 274
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=7.2e-11 Score=133.18 Aligned_cols=212 Identities=20% Similarity=0.266 Sum_probs=150.2
Q ss_pred CCcccchHHHHHHHHHhcc----CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEeccccccc-----
Q 002012 269 DPVIGRDDEIRRCIQILSR----RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAG----- 339 (982)
Q Consensus 269 ~~liG~~~~i~~l~~~L~~----~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~----- 339 (982)
+.+.+|+++++++..+|.. ..+.|++++|+||||||++++.+++++..... +..++++||-.+...
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~-----~~~~~yINc~~~~t~~~i~~ 91 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSA-----NVEVVYINCLELRTPYQVLS 91 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhc-----cCceEEEeeeeCCCHHHHHH
Confidence 3489999999999887654 56678999999999999999999999965421 333788887554421
Q ss_pred --------ccccc-cHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhc--CCCeEEEEecCch
Q 002012 340 --------TCYRG-DFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLG--RGELRCIGATTLN 408 (982)
Q Consensus 340 --------~~~~g-~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le--~g~i~vI~at~~~ 408 (982)
....| ...+.++.+.+.+...+...|+++||++.|....+ ++.-.|..... ..++.+|+.+|..
T Consensus 92 ~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~-----~~LY~L~r~~~~~~~~v~vi~i~n~~ 166 (366)
T COG1474 92 KILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG-----EVLYSLLRAPGENKVKVSIIAVSNDD 166 (366)
T ss_pred HHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc-----hHHHHHHhhccccceeEEEEEEeccH
Confidence 11122 23334455555665557788999999999985542 33222333333 3466888888888
Q ss_pred hHhhhhhcChHHHhccc--eEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCCcchhhHHHH
Q 002012 409 EYRNYIEKDPALERRFQ--QVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLPDKAIDLVD 486 (982)
Q Consensus 409 ~~~~~~~~d~al~rRf~--~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~p~~a~~lld 486 (982)
.|.. .+||.+.++|. .|.|++++.+|+..||+.-.+. ....-.++++++..++..+....+ -.++|++++.
T Consensus 167 ~~~~--~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~--~~~~~~~~~~vl~lia~~~a~~~G---DAR~aidilr 239 (366)
T COG1474 167 KFLD--YLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEE--GFSAGVIDDDVLKLIAALVAAESG---DARKAIDILR 239 (366)
T ss_pred HHHH--HhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHh--hccCCCcCccHHHHHHHHHHHcCc---cHHHHHHHHH
Confidence 7733 47999999985 7788889999999999754443 124567899999999888765432 4578999999
Q ss_pred HHHHHhhhhcc
Q 002012 487 EAAAKLKMEIT 497 (982)
Q Consensus 487 ~a~~~~~~~~~ 497 (982)
.|+..+..+..
T Consensus 240 ~A~eiAe~~~~ 250 (366)
T COG1474 240 RAGEIAEREGS 250 (366)
T ss_pred HHHHHHHhhCC
Confidence 99977765544
No 275
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.33 E-value=6.2e-12 Score=141.64 Aligned_cols=174 Identities=29% Similarity=0.326 Sum_probs=119.4
Q ss_pred HHHHHHHhhhcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEecccc
Q 002012 653 KLVMLEEVLHKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEY 732 (982)
Q Consensus 653 ~l~~l~~~l~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~ 732 (982)
....+...+...++|+++++..+..++.. | +++||.||||||||++|+.+|+.+ +.+|+++.|...
T Consensus 14 ~~~~~~~~~~~~~~g~~~~~~~~l~a~~~---~--------~~vll~G~PG~gKT~la~~lA~~l---~~~~~~i~~t~~ 79 (329)
T COG0714 14 ILGKIRSELEKVVVGDEEVIELALLALLA---G--------GHVLLEGPPGVGKTLLARALARAL---GLPFVRIQCTPD 79 (329)
T ss_pred HHHHHHhhcCCeeeccHHHHHHHHHHHHc---C--------CCEEEECCCCccHHHHHHHHHHHh---CCCeEEEecCCC
Confidence 34455566777799999998877666652 1 249999999999999999999998 789999999876
Q ss_pred ccccccccccCCCCCcc-------ccccCCchhHHHhhCCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEec-
Q 002012 733 MEKHSVSRLVGAPPGYV-------GYEEGGQLTEVVRRRPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSF- 804 (982)
Q Consensus 733 ~~~~~~~~l~g~~~g~v-------g~~~~~~l~~~l~~~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~- 804 (982)
.... .++|...-.. -.-..+.++.... +|+++|||+++++.++++|+++|++++++...-.....
T Consensus 80 l~p~---d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~----~ill~DEInra~p~~q~aLl~~l~e~~vtv~~~~~~~~~ 152 (329)
T COG0714 80 LLPS---DLLGTYAYAALLLEPGEFRFVPGPLFAAVR----VILLLDEINRAPPEVQNALLEALEERQVTVPGLTTIRLP 152 (329)
T ss_pred CCHH---HhcCchhHhhhhccCCeEEEecCCcccccc----eEEEEeccccCCHHHHHHHHHHHhCcEEEECCcCCcCCC
Confidence 5443 3344321100 0011133433333 69999999999999999999999999888754221333
Q ss_pred ccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHH
Q 002012 805 TNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEIS 873 (982)
Q Consensus 805 ~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~ 873 (982)
...++|+|+|.+...-. ..++.++++||...+.+..+..++..
T Consensus 153 ~~f~viaT~Np~e~~g~--------------------------~~l~eA~ldRf~~~~~v~yp~~~~e~ 195 (329)
T COG0714 153 PPFIVIATQNPGEYEGT--------------------------YPLPEALLDRFLLRIYVDYPDSEEEE 195 (329)
T ss_pred CCCEEEEccCccccCCC--------------------------cCCCHHHHhhEEEEEecCCCCchHHH
Confidence 55778888895432100 22678899999766777766444333
No 276
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.33 E-value=1.5e-11 Score=134.53 Aligned_cols=170 Identities=15% Similarity=0.152 Sum_probs=118.2
Q ss_pred chHHHHHHHHHhccCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccccccccccHHHH----
Q 002012 274 RDDEIRRCIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGTCYRGDFEKR---- 349 (982)
Q Consensus 274 ~~~~i~~l~~~L~~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~~~~g~~e~~---- 349 (982)
..+.++.++..+.. ..+++|.||||||||++++.+|..+ +.+++.++++.........|...-.
T Consensus 50 ~~~~~~~vl~~l~~--~~~ilL~G~pGtGKTtla~~lA~~l----------~~~~~rV~~~~~l~~~DliG~~~~~l~~g 117 (327)
T TIGR01650 50 DKATTKAICAGFAY--DRRVMVQGYHGTGKSTHIEQIAARL----------NWPCVRVNLDSHVSRIDLVGKDAIVLKDG 117 (327)
T ss_pred CHHHHHHHHHHHhc--CCcEEEEeCCCChHHHHHHHHHHHH----------CCCeEEEEecCCCChhhcCCCceeeccCC
Confidence 44455666665543 4589999999999999999999999 8888888876655443333321100
Q ss_pred ------HHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcC----------------CCeEEEEecCc
Q 002012 350 ------LKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGR----------------GELRCIGATTL 407 (982)
Q Consensus 350 ------l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~----------------g~i~vI~at~~ 407 (982)
....+..+. ..+++|++||++... .++++.|..+|+. ..+++|+|+|+
T Consensus 118 ~~~~~f~~GpL~~A~--~~g~illlDEin~a~--------p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np 187 (327)
T TIGR01650 118 KQITEFRDGILPWAL--QHNVALCFDEYDAGR--------PDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANT 187 (327)
T ss_pred cceeEEecCcchhHH--hCCeEEEechhhccC--------HHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCC
Confidence 112232232 235689999999874 5666676666652 24689999999
Q ss_pred hh-------HhhhhhcChHHHhccc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhh
Q 002012 408 NE-------YRNYIEKDPALERRFQ-QVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLAD 469 (982)
Q Consensus 408 ~~-------~~~~~~~d~al~rRf~-~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~ 469 (982)
.+ |.....+++++++||. .+.+..|+.++-.+|+......+ ....+++.++++++++.
T Consensus 188 ~g~Gd~~G~y~Gt~~l~~A~lDRF~i~~~~~Yp~~e~E~~Il~~~~~~~----~~~~~~~i~~~mV~la~ 253 (327)
T TIGR01650 188 IGLGDTTGLYHGTQQINQAQMDRWSIVTTLNYLEHDNEAAIVLAKAKGF----DDTEGKDIINAMVRVAD 253 (327)
T ss_pred CCcCCCCcceeeeecCCHHHHhheeeEeeCCCCCHHHHHHHHHhhccCC----CccchHHHHHHHHHHHH
Confidence 76 8888899999999997 56899999999999987543221 11124567777777664
No 277
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.32 E-value=4.5e-12 Score=143.14 Aligned_cols=166 Identities=20% Similarity=0.352 Sum_probs=110.7
Q ss_pred cccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCC-c---eE----EE----ecc
Q 002012 663 KRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTEN-A---LV----RI----DMS 730 (982)
Q Consensus 663 ~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~-~---~v----~i----~~s 730 (982)
.+|+||+.+++.+.+++...+. | ..+||+||+|+||+++|..+|+.+++.+. . +. .+ +|.
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~rl-------~-HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~ 90 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGRL-------H-HAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHP 90 (365)
T ss_pred hhccChHHHHHHHHHHHHcCCC-------C-ceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCCh
Confidence 6799999999999998875322 1 23999999999999999999999976431 0 00 00 111
Q ss_pred cc--ccccccccccCCCC----------CccccccCCchhHHHhh----CCCeEEEEccccccCHHHHHHHHHhhhcCce
Q 002012 731 EY--MEKHSVSRLVGAPP----------GYVGYEEGGQLTEVVRR----RPYSVVLFDEIEKAHQDVFNILLQLLDDGRI 794 (982)
Q Consensus 731 ~~--~~~~~~~~l~g~~~----------g~vg~~~~~~l~~~l~~----~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~ 794 (982)
.+ .....+.++.--.+ ..++.++.+.+.+.+.. ..+.|++|||+|.+++..+|.|++.+|+-.
T Consensus 91 ~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp- 169 (365)
T PRK07471 91 VARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPP- 169 (365)
T ss_pred HHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCC-
Confidence 11 11111122111101 01111222223333332 345799999999999999999999999721
Q ss_pred ecCCCcEEecccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHH
Q 002012 795 TDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISK 874 (982)
Q Consensus 795 ~d~~g~~~~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~ 874 (982)
.+++||++|+.... +.|.+.+|| ..+.|+|++.+++.+
T Consensus 170 ----------~~~~~IL~t~~~~~-------------------------------llpti~SRc-~~i~l~~l~~~~i~~ 207 (365)
T PRK07471 170 ----------ARSLFLLVSHAPAR-------------------------------LLPTIRSRC-RKLRLRPLAPEDVID 207 (365)
T ss_pred ----------CCeEEEEEECCchh-------------------------------chHHhhccc-eEEECCCCCHHHHHH
Confidence 35788888876432 567889999 689999999999998
Q ss_pred HHHHH
Q 002012 875 IVEIQ 879 (982)
Q Consensus 875 il~~~ 879 (982)
++...
T Consensus 208 ~L~~~ 212 (365)
T PRK07471 208 ALAAA 212 (365)
T ss_pred HHHHh
Confidence 88765
No 278
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.32 E-value=3.8e-11 Score=140.98 Aligned_cols=202 Identities=16% Similarity=0.281 Sum_probs=128.7
Q ss_pred CCCC-cccchHH--HHHHHHHhccC--CCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEeccccccccc
Q 002012 267 KLDP-VIGRDDE--IRRCIQILSRR--TKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGTC 341 (982)
Q Consensus 267 ~l~~-liG~~~~--i~~l~~~L~~~--~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~~ 341 (982)
+|++ ++|..+. ...+..+.... ..++++|+||||+|||+|++++++.+.... .+..++++++..+...
T Consensus 120 tfd~fv~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~-----~~~~v~yi~~~~~~~~-- 192 (450)
T PRK00149 120 TFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKN-----PNAKVVYVTSEKFTND-- 192 (450)
T ss_pred cccccccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhC-----CCCeEEEEEHHHHHHH--
Confidence 6776 4465543 23333333221 234588999999999999999999985432 2677888887665421
Q ss_pred ccccHHH-HHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCCCeEEEEecCchhHhhhhhcChHH
Q 002012 342 YRGDFEK-RLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRGELRCIGATTLNEYRNYIEKDPAL 420 (982)
Q Consensus 342 ~~g~~e~-~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g~i~vI~at~~~~~~~~~~~d~al 420 (982)
+...... ....+.+.+.. .-+|+|||+|.+.+.. ....++..++....+.+...+|+++.++. ....+++.+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~---~dlLiiDDi~~l~~~~--~~~~~l~~~~n~l~~~~~~iiits~~~p~--~l~~l~~~l 265 (450)
T PRK00149 193 FVNALRNNTMEEFKEKYRS---VDVLLIDDIQFLAGKE--RTQEEFFHTFNALHEAGKQIVLTSDRPPK--ELPGLEERL 265 (450)
T ss_pred HHHHHHcCcHHHHHHHHhc---CCEEEEehhhhhcCCH--HHHHHHHHHHHHHHHCCCcEEEECCCCHH--HHHHHHHHH
Confidence 1111110 11223333332 3399999999985322 11234556666666777666665555443 122368999
Q ss_pred Hhccc---eEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCCcchhhHHHHHHHHHh
Q 002012 421 ERRFQ---QVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLPDKAIDLVDEAAAKL 492 (982)
Q Consensus 421 ~rRf~---~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~p~~a~~lld~a~~~~ 492 (982)
.+||. .+.+..|+.+++..||+..... .++.++++++++++..+.+-+ +.+...++...+.+
T Consensus 266 ~SRl~~gl~v~i~~pd~~~r~~il~~~~~~----~~~~l~~e~l~~ia~~~~~~~------R~l~~~l~~l~~~~ 330 (450)
T PRK00149 266 RSRFEWGLTVDIEPPDLETRIAILKKKAEE----EGIDLPDEVLEFIAKNITSNV------RELEGALNRLIAYA 330 (450)
T ss_pred HhHhcCCeeEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHcCcCCCH------HHHHHHHHHHHHHH
Confidence 99994 7899999999999999988776 588999999999988866432 44444555444443
No 279
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.32 E-value=1.5e-11 Score=136.66 Aligned_cols=214 Identities=19% Similarity=0.242 Sum_probs=131.4
Q ss_pred cCCCCCcccchHHHHHHHHHhccCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCC-------C---------C---
Q 002012 265 SGKLDPVIGRDDEIRRCIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETL-------Q---------N--- 325 (982)
Q Consensus 265 ~~~l~~liG~~~~i~~l~~~L~~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l-------~---------~--- 325 (982)
|-.|.+++|+++.++.++-.+......|+||.|+||||||++|++++..+..-...+.+ . +
T Consensus 4 ~~~f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 83 (334)
T PRK13407 4 PFPFSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWAHVSSTTM 83 (334)
T ss_pred CCCHHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCcccccccCCcc
Confidence 34577899999999987765433345799999999999999999999988431111110 0 0
Q ss_pred ----CeEEEEec----ccccccccccccHHHHHHH---HHH--HHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHh
Q 002012 326 ----RKLISLDM----ASLVAGTCYRGDFEKRLKA---VLK--EVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKP 392 (982)
Q Consensus 326 ----~~v~~l~~----~~l~~~~~~~g~~e~~l~~---l~~--~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~ 392 (982)
.+++.+.. ..+.++. +++..+.. .+. .+...++ .+|||||++.+. ..+++.|++
T Consensus 84 ~~~~~p~~~~p~~~t~~~l~G~~----d~~~~l~~g~~~~~~G~l~~A~~-GiL~lDEInrl~--------~~~q~~Lle 150 (334)
T PRK13407 84 IERPTPVVDLPLGVTEDRVVGAL----DIERALTRGEKAFEPGLLARANR-GYLYIDEVNLLE--------DHIVDLLLD 150 (334)
T ss_pred cccCCccccCCCCCCcceeecch----hhhhhhhcCCeeecCCceEEcCC-CeEEecChHhCC--------HHHHHHHHH
Confidence 01111110 0011110 11111000 000 0111222 389999999986 677788888
Q ss_pred hhcCCC---------------eEEEEecCchhHhhhhhcChHHHhccc-eEEecCCCH-HHHHHHHHHHHHH------H-
Q 002012 393 MLGRGE---------------LRCIGATTLNEYRNYIEKDPALERRFQ-QVFCDQPSV-ENTISILRGLRER------Y- 448 (982)
Q Consensus 393 ~le~g~---------------i~vI~at~~~~~~~~~~~d~al~rRf~-~i~i~~Ps~-~e~~~IL~~~~~~------~- 448 (982)
.|+.+. +.+|+++|+.+. .+.+++..||. .+.+..|.. +++.+|++..... +
T Consensus 151 ~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~----~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~~~~~~~~~~~ 226 (334)
T PRK13407 151 VAQSGENVVEREGLSIRHPARFVLVGSGNPEEG----ELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRDAYDADHDAFM 226 (334)
T ss_pred HHHcCCeEEEECCeEEecCCCEEEEecCCcccC----CCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhhcccccchhhh
Confidence 887553 577778777542 48999999997 788888865 8888888652210 0
Q ss_pred --------------hh----hcCCccChHHHHHHHHHhhhhhccCCCcchhhHHHHHHHHHhhhhcc
Q 002012 449 --------------EL----HHGVKISDSALVSAAVLADRYITERFLPDKAIDLVDEAAAKLKMEIT 497 (982)
Q Consensus 449 --------------~~----~~~v~i~~~~l~~~~~~s~r~i~~~~~p~~a~~lld~a~~~~~~~~~ 497 (982)
.. -..|.++++.+.++++++...-. .-|.-.+.++..|.+.+.+...
T Consensus 227 ~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~--~s~Ra~i~l~~aA~a~A~l~Gr 291 (334)
T PRK13407 227 AKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIALGS--DGLRGELTLLRAARALAAFEGA 291 (334)
T ss_pred ccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCC--CCchHHHHHHHHHHHHHHHcCC
Confidence 00 13477888888888888764322 2456666677777777666654
No 280
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.32 E-value=2.3e-11 Score=133.05 Aligned_cols=157 Identities=20% Similarity=0.246 Sum_probs=109.8
Q ss_pred eEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccccccccCCCC-----Cc-cccccCCchhHHHhhCCCeE
Q 002012 695 SFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRLVGAPP-----GY-VGYEEGGQLTEVVRRRPYSV 768 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l~g~~~-----g~-vg~~~~~~l~~~l~~~~~~V 768 (982)
++||.||||||||++|+.+|+.+ +.++++++++..... ..++|... |. +..-..+.+..+.+. +.+
T Consensus 66 ~ilL~G~pGtGKTtla~~lA~~l---~~~~~rV~~~~~l~~---~DliG~~~~~l~~g~~~~~f~~GpL~~A~~~--g~i 137 (327)
T TIGR01650 66 RVMVQGYHGTGKSTHIEQIAARL---NWPCVRVNLDSHVSR---IDLVGKDAIVLKDGKQITEFRDGILPWALQH--NVA 137 (327)
T ss_pred cEEEEeCCCChHHHHHHHHHHHH---CCCeEEEEecCCCCh---hhcCCCceeeccCCcceeEEecCcchhHHhC--CeE
Confidence 49999999999999999999999 889999999886433 34566532 11 011122345444443 468
Q ss_pred EEEccccccCHHHHHHHHHhhhc-CceecCC-CcEEec-ccEEEEEecCCChH-HHHHhhhhcccchHHHHHHHHHHHHH
Q 002012 769 VLFDEIEKAHQDVFNILLQLLDD-GRITDSQ-GRTVSF-TNCVVIMTSNIGSH-YILETLQSVQDSKEAVYEVMKKQVVE 844 (982)
Q Consensus 769 l~lDEidkl~~~~~~~Ll~~le~-g~~~d~~-g~~~~~-~~~iiI~tsn~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~ 844 (982)
++|||++.++|++++.|+.+||. |.++..+ ++.+.. .++++|+|+|.... .-... ..+
T Consensus 138 lllDEin~a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~-y~G----------------- 199 (327)
T TIGR01650 138 LCFDEYDAGRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGL-YHG----------------- 199 (327)
T ss_pred EEechhhccCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcc-eee-----------------
Confidence 99999999999999999999994 5776543 556633 58999999996321 00000 000
Q ss_pred HHHhhcChHHHhccccccccCCCChhHHHHHHHHH
Q 002012 845 LARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQ 879 (982)
Q Consensus 845 ~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~ 879 (982)
...++.++++||-.++.+..++.++-.+|+...
T Consensus 200 --t~~l~~A~lDRF~i~~~~~Yp~~e~E~~Il~~~ 232 (327)
T TIGR01650 200 --TQQINQAQMDRWSIVTTLNYLEHDNEAAIVLAK 232 (327)
T ss_pred --eecCCHHHHhheeeEeeCCCCCHHHHHHHHHhh
Confidence 023688999999656678888888877777654
No 281
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.32 E-value=1.9e-11 Score=128.99 Aligned_cols=186 Identities=14% Similarity=0.278 Sum_probs=113.1
Q ss_pred CCCCcc-cchH-HHHHHHHHhccCCC---CCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEeccccccccc
Q 002012 267 KLDPVI-GRDD-EIRRCIQILSRRTK---NNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGTC 341 (982)
Q Consensus 267 ~l~~li-G~~~-~i~~l~~~L~~~~~---~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~~ 341 (982)
+|+..| |..+ .....+..+...+. +.++|+||+|+|||+|.+++++++.... .+.+++++++..+....
T Consensus 6 tFdnfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~-----~~~~v~y~~~~~f~~~~- 79 (219)
T PF00308_consen 6 TFDNFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQH-----PGKRVVYLSAEEFIREF- 79 (219)
T ss_dssp SCCCS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHC-----TTS-EEEEEHHHHHHHH-
T ss_pred ccccCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhcc-----ccccceeecHHHHHHHH-
Confidence 567664 6533 33334443433222 2467889999999999999999885421 27789999866554210
Q ss_pred ccccHH-HHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCCCeEEEEecCchhHhhhhhcChHH
Q 002012 342 YRGDFE-KRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRGELRCIGATTLNEYRNYIEKDPAL 420 (982)
Q Consensus 342 ~~g~~e-~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g~i~vI~at~~~~~~~~~~~d~al 420 (982)
..... ..+..+.+.+...+ +|+||++|.+.+.. .....+.+++....++|..++|.+...+. ....+++.|
T Consensus 80 -~~~~~~~~~~~~~~~~~~~D---lL~iDDi~~l~~~~--~~q~~lf~l~n~~~~~~k~li~ts~~~P~--~l~~~~~~L 151 (219)
T PF00308_consen 80 -ADALRDGEIEEFKDRLRSAD---LLIIDDIQFLAGKQ--RTQEELFHLFNRLIESGKQLILTSDRPPS--ELSGLLPDL 151 (219)
T ss_dssp -HHHHHTTSHHHHHHHHCTSS---EEEEETGGGGTTHH--HHHHHHHHHHHHHHHTTSEEEEEESS-TT--TTTTS-HHH
T ss_pred -HHHHHcccchhhhhhhhcCC---EEEEecchhhcCch--HHHHHHHHHHHHHHhhCCeEEEEeCCCCc--cccccChhh
Confidence 00000 11223334443333 99999999985321 11234556666666777766665544443 233478999
Q ss_pred Hhccc---eEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhh
Q 002012 421 ERRFQ---QVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADR 470 (982)
Q Consensus 421 ~rRf~---~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r 470 (982)
.+||. .+.+.+|+.+++..||+..... .++.++++++.+++....+
T Consensus 152 ~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~----~~~~l~~~v~~~l~~~~~~ 200 (219)
T PF00308_consen 152 RSRLSWGLVVELQPPDDEDRRRILQKKAKE----RGIELPEEVIEYLARRFRR 200 (219)
T ss_dssp HHHHHCSEEEEE----HHHHHHHHHHHHHH----TT--S-HHHHHHHHHHTTS
T ss_pred hhhHhhcchhhcCCCCHHHHHHHHHHHHHH----hCCCCcHHHHHHHHHhhcC
Confidence 99994 8899999999999999887776 6889999999999888654
No 282
>PRK08727 hypothetical protein; Validated
Probab=99.31 E-value=5.6e-11 Score=126.95 Aligned_cols=164 Identities=17% Similarity=0.216 Sum_probs=113.8
Q ss_pred eEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccccccccCCCCCccccccCCchhHHHhhCCCeEEEEccc
Q 002012 695 SFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEI 774 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~~~~~Vl~lDEi 774 (982)
+++|+||+|||||+++++++..+...+...+.+++.++... + ....+.+.. ..+|+|||+
T Consensus 43 ~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~~------------~------~~~~~~l~~--~dlLiIDDi 102 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAGR------------L------RDALEALEG--RSLVALDGL 102 (233)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhhh------------H------HHHHHHHhc--CCEEEEeCc
Confidence 59999999999999999999988655556666665543210 0 012222332 349999999
Q ss_pred cccC--HHHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcCh
Q 002012 775 EKAH--QDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRP 852 (982)
Q Consensus 775 dkl~--~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p 852 (982)
+.+. +..+..|+.+++... . ...-+|+|+|.....+.. +.|
T Consensus 103 ~~l~~~~~~~~~lf~l~n~~~--~--------~~~~vI~ts~~~p~~l~~---------------------------~~~ 145 (233)
T PRK08727 103 ESIAGQREDEVALFDFHNRAR--A--------AGITLLYTARQMPDGLAL---------------------------VLP 145 (233)
T ss_pred ccccCChHHHHHHHHHHHHHH--H--------cCCeEEEECCCChhhhhh---------------------------hhH
Confidence 9885 456677777776421 0 124588888876543321 467
Q ss_pred HHHhcc--ccccccCCCChhHHHHHHHHHHHHHHHHHHhCCCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHHHHH
Q 002012 853 EFLNRI--DEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVE 927 (982)
Q Consensus 853 ~ll~Ri--d~ii~F~pl~~~~l~~il~~~l~~~~~~~~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~l~ 927 (982)
++.+|+ ..++.|+|++.+++.++++..... ++ +.++++++++|+.+. .+ ..|.+.+.++.+..
T Consensus 146 dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~-------~~--l~l~~e~~~~La~~~-~r--d~r~~l~~L~~l~~ 210 (233)
T PRK08727 146 DLRSRLAQCIRIGLPVLDDVARAAVLRERAQR-------RG--LALDEAAIDWLLTHG-ER--ELAGLVALLDRLDR 210 (233)
T ss_pred HHHHHHhcCceEEecCCCHHHHHHHHHHHHHH-------cC--CCCCHHHHHHHHHhC-CC--CHHHHHHHHHHHHH
Confidence 888996 357899999999999999976554 33 889999999999973 32 24677777776443
No 283
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.31 E-value=5.9e-11 Score=137.69 Aligned_cols=186 Identities=17% Similarity=0.314 Sum_probs=119.2
Q ss_pred CCCC-cccchHHH-HHHHH-HhccC--CCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEeccccccccc
Q 002012 267 KLDP-VIGRDDEI-RRCIQ-ILSRR--TKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGTC 341 (982)
Q Consensus 267 ~l~~-liG~~~~i-~~l~~-~L~~~--~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~~ 341 (982)
+|++ ++|.+..+ ...+. +.... ..+.++|+||||+|||+|++++++.+.... .+..++++++..+...
T Consensus 108 tfd~fi~g~~n~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~-----~~~~v~yi~~~~~~~~-- 180 (405)
T TIGR00362 108 TFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNEILENN-----PNAKVVYVSSEKFTND-- 180 (405)
T ss_pred cccccccCCcHHHHHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHHHHHHhC-----CCCcEEEEEHHHHHHH--
Confidence 5666 56766642 22222 22221 224578999999999999999999986531 2578888887655421
Q ss_pred ccccHH-HHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCCCeEEEEecCchhHhhhhhcChHH
Q 002012 342 YRGDFE-KRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRGELRCIGATTLNEYRNYIEKDPAL 420 (982)
Q Consensus 342 ~~g~~e-~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g~i~vI~at~~~~~~~~~~~d~al 420 (982)
+..... .....+.+.+.. .-+|+|||+|.+.+.. .....+.+++....+.+...+|.+...+. ....+++.+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~---~dlLiiDDi~~l~~~~--~~~~~l~~~~n~~~~~~~~iiits~~~p~--~l~~l~~~l 253 (405)
T TIGR00362 181 FVNALRNNKMEEFKEKYRS---VDLLLIDDIQFLAGKE--RTQEEFFHTFNALHENGKQIVLTSDRPPK--ELPGLEERL 253 (405)
T ss_pred HHHHHHcCCHHHHHHHHHh---CCEEEEehhhhhcCCH--HHHHHHHHHHHHHHHCCCCEEEecCCCHH--HHhhhhhhh
Confidence 111100 011222333332 2389999999985321 11233555555565666655554444333 222468999
Q ss_pred Hhccc---eEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhh
Q 002012 421 ERRFQ---QVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADR 470 (982)
Q Consensus 421 ~rRf~---~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r 470 (982)
.+||. .+.+..|+.+++..||+..... .++.++++++.+++....+
T Consensus 254 ~SRl~~g~~v~i~~pd~~~r~~il~~~~~~----~~~~l~~e~l~~ia~~~~~ 302 (405)
T TIGR00362 254 RSRFEWGLVVDIEPPDLETRLAILQKKAEE----EGLELPDEVLEFIAKNIRS 302 (405)
T ss_pred hhhccCCeEEEeCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHhcCC
Confidence 99994 6999999999999999988776 5889999999999887654
No 284
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.31 E-value=5.6e-12 Score=121.98 Aligned_cols=116 Identities=34% Similarity=0.538 Sum_probs=86.5
Q ss_pred EEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccccccccCCCCCcccccc--CCchhHHHhhCC-CeEEEEc
Q 002012 696 FMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRLVGAPPGYVGYEE--GGQLTEVVRRRP-YSVVLFD 772 (982)
Q Consensus 696 lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l~g~~~g~vg~~~--~~~l~~~l~~~~-~~Vl~lD 772 (982)
+||+||||||||++|+.+|+.+ +.+++.++++++... +.+... ...++..+.... ++|||||
T Consensus 1 ill~G~~G~GKT~l~~~la~~l---~~~~~~i~~~~~~~~------------~~~~~~~~i~~~~~~~~~~~~~~vl~iD 65 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL---GFPFIEIDGSELISS------------YAGDSEQKIRDFFKKAKKSAKPCVLFID 65 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT---TSEEEEEETTHHHTS------------STTHHHHHHHHHHHHHHHTSTSEEEEEE
T ss_pred CEEECcCCCCeeHHHHHHHhhc---ccccccccccccccc------------cccccccccccccccccccccceeeeec
Confidence 6899999999999999999998 788999999987522 111111 122344454555 7999999
Q ss_pred cccccCHHH-----------HHHHHHhhhcCceecCCCcEEecccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHH
Q 002012 773 EIEKAHQDV-----------FNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQ 841 (982)
Q Consensus 773 Eidkl~~~~-----------~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~ 841 (982)
|+|.+.+.. ++.|+..++...-. ..+++||+|||....
T Consensus 66 e~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~--------~~~~~vI~ttn~~~~----------------------- 114 (132)
T PF00004_consen 66 EIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSK--------NSRVIVIATTNSPDK----------------------- 114 (132)
T ss_dssp TGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTT--------SSSEEEEEEESSGGG-----------------------
T ss_pred cchhcccccccccccccccccceeeecccccccc--------cccceeEEeeCChhh-----------------------
Confidence 999998775 88999999864311 246899999997322
Q ss_pred HHHHHHhhcChHHH-hccccccccC
Q 002012 842 VVELARQTFRPEFL-NRIDEYIVFQ 865 (982)
Q Consensus 842 ~~~~~~~~f~p~ll-~Rid~ii~F~ 865 (982)
++|.++ +||+..|.|+
T Consensus 115 --------i~~~l~~~rf~~~i~~~ 131 (132)
T PF00004_consen 115 --------IDPALLRSRFDRRIEFP 131 (132)
T ss_dssp --------SCHHHHSTTSEEEEEE-
T ss_pred --------CCHhHHhCCCcEEEEcC
Confidence 788999 9998877765
No 285
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.31 E-value=7.1e-11 Score=137.01 Aligned_cols=186 Identities=15% Similarity=0.216 Sum_probs=117.7
Q ss_pred CCCCcc-cchHHHH-HHHHHhcc-------CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEeccccc
Q 002012 267 KLDPVI-GRDDEIR-RCIQILSR-------RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLV 337 (982)
Q Consensus 267 ~l~~li-G~~~~i~-~l~~~L~~-------~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~ 337 (982)
+|+..+ |....+. ..+..+.. ...++++|+||+|+|||+|++++++.+... +.++++++...+.
T Consensus 109 tFdnFv~g~~N~~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~-------~~~v~yi~~~~f~ 181 (445)
T PRK12422 109 TFANFLVTPENDLPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRES-------GGKILYVRSELFT 181 (445)
T ss_pred cccceeeCCcHHHHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHc-------CCCEEEeeHHHHH
Confidence 566655 7665532 33333321 123568899999999999999999998542 5778888765443
Q ss_pred ccccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCCCeEEEEecCchhHhhhhhcC
Q 002012 338 AGTCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRGELRCIGATTLNEYRNYIEKD 417 (982)
Q Consensus 338 ~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g~i~vI~at~~~~~~~~~~~d 417 (982)
.. +...+...-...|.... ...-+|+|||+|.+.+.. ....++..++....+.|...++.+++.+. ....++
T Consensus 182 ~~--~~~~l~~~~~~~f~~~~--~~~dvLiIDDiq~l~~k~--~~qeelf~l~N~l~~~~k~IIlts~~~p~--~l~~l~ 253 (445)
T PRK12422 182 EH--LVSAIRSGEMQRFRQFY--RNVDALFIEDIEVFSGKG--ATQEEFFHTFNSLHTEGKLIVISSTCAPQ--DLKAME 253 (445)
T ss_pred HH--HHHHHhcchHHHHHHHc--ccCCEEEEcchhhhcCCh--hhHHHHHHHHHHHHHCCCcEEEecCCCHH--HHhhhH
Confidence 21 11111000001122211 123399999999985322 12234555555555566655555544333 123578
Q ss_pred hHHHhccc---eEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhh
Q 002012 418 PALERRFQ---QVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRY 471 (982)
Q Consensus 418 ~al~rRf~---~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~ 471 (982)
+.+.+||. .+.+.+|+.+++..||+..++. .++.++++++.+++....+.
T Consensus 254 ~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~----~~~~l~~evl~~la~~~~~d 306 (445)
T PRK12422 254 ERLISRFEWGIAIPLHPLTKEGLRSFLERKAEA----LSIRIEETALDFLIEALSSN 306 (445)
T ss_pred HHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHhcCCC
Confidence 99999993 8899999999999999887776 57899999999998876543
No 286
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.30 E-value=1.6e-11 Score=137.32 Aligned_cols=158 Identities=17% Similarity=0.311 Sum_probs=107.5
Q ss_pred hcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccccccc
Q 002012 662 HKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRL 741 (982)
Q Consensus 662 ~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l 741 (982)
+.+|+||+.+++.+...+...+ -| ..+||+||+|+|||++|+.+|+.+++.... ..+.+ +..+
T Consensus 3 ~~~i~g~~~~~~~l~~~~~~~~-------~~-ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~------~~h~D---~~~~ 65 (313)
T PRK05564 3 FHTIIGHENIKNRIKNSIIKNR-------FS-HAHIIVGEDGIGKSLLAKEIALKILGKSQQ------REYVD---IIEF 65 (313)
T ss_pred hhhccCcHHHHHHHHHHHHcCC-------CC-ceEEeECCCCCCHHHHHHHHHHHHcCCCCC------CCCCC---eEEe
Confidence 4679999999999988886321 12 248999999999999999999998653211 00000 0001
Q ss_pred cCCCCCccccccCCchhHHHhh----CCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCCh
Q 002012 742 VGAPPGYVGYEEGGQLTEVVRR----RPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGS 817 (982)
Q Consensus 742 ~g~~~g~vg~~~~~~l~~~l~~----~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~ 817 (982)
.......++.++.+.+.+.+.. +++.|++||++|+++...+|+|++.||+- ..+++||++|+...
T Consensus 66 ~~~~~~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEep-----------p~~t~~il~~~~~~ 134 (313)
T PRK05564 66 KPINKKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEP-----------PKGVFIILLCENLE 134 (313)
T ss_pred ccccCCCCCHHHHHHHHHHHhcCcccCCceEEEEechhhcCHHHHHHHHHHhcCC-----------CCCeEEEEEeCChH
Confidence 0000011222222233333333 34579999999999999999999999971 24688888875432
Q ss_pred HHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHH
Q 002012 818 HYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQ 879 (982)
Q Consensus 818 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~ 879 (982)
. +.|++.+|| .++.|.|++.+++...+...
T Consensus 135 ~-------------------------------ll~TI~SRc-~~~~~~~~~~~~~~~~l~~~ 164 (313)
T PRK05564 135 Q-------------------------------ILDTIKSRC-QIYKLNRLSKEEIEKFISYK 164 (313)
T ss_pred h-------------------------------CcHHHHhhc-eeeeCCCcCHHHHHHHHHHH
Confidence 1 678999999 69999999999998777654
No 287
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=8.9e-12 Score=127.36 Aligned_cols=196 Identities=24% Similarity=0.390 Sum_probs=134.1
Q ss_pred hcccccchHHHHHHHHHHHH--------HhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccc
Q 002012 662 HKRVIGQDIAVKSVADAIRR--------SRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYM 733 (982)
Q Consensus 662 ~~~iiGq~~a~~~l~~~i~~--------~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~ 733 (982)
..++-|..+.++.+.+.+.. ...|+. .|. .+|++||||||||.+|+++|+.- +.-|+++=.|++.
T Consensus 176 y~dvggckeqieklrevve~pll~perfv~lgid---ppk-gvllygppgtgktl~aravanrt---dacfirvigselv 248 (435)
T KOG0729|consen 176 YSDVGGCKEQIEKLREVVELPLLHPERFVNLGID---PPK-GVLLYGPPGTGKTLCARAVANRT---DACFIRVIGSELV 248 (435)
T ss_pred cccccchHHHHHHHHHHHhccccCHHHHhhcCCC---CCC-ceEEeCCCCCchhHHHHHHhccc---CceEEeehhHHHH
Confidence 46788888888888877743 233443 233 39999999999999999999764 7788998888875
Q ss_pred cccccccccCCCCCccccccCCchhHHHhhCCCeEEEEccccccC-----------HHHHHHHHHhhhcCceecCCCcEE
Q 002012 734 EKHSVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEIEKAH-----------QDVFNILLQLLDDGRITDSQGRTV 802 (982)
Q Consensus 734 ~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~~~~~Vl~lDEidkl~-----------~~~~~~Ll~~le~g~~~d~~g~~~ 802 (982)
.+ ++|. |....+.+++..+....|+|||||||... .++|..+|.++..-.=.|+.
T Consensus 249 qk-----yvge-----garmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdpr---- 314 (435)
T KOG0729|consen 249 QK-----YVGE-----GARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPR---- 314 (435)
T ss_pred HH-----Hhhh-----hHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCC----
Confidence 43 3332 12223457777777888999999999873 45888888887542222343
Q ss_pred ecccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHH--hccccccccCCCChhHHHHHHHHHH
Q 002012 803 SFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFL--NRIDEYIVFQPLDSKEISKIVEIQM 880 (982)
Q Consensus 803 ~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll--~Rid~ii~F~pl~~~~l~~il~~~l 880 (982)
.|+-++|+||.+.. ++|+|+ +|+|..|.|.-++-+-...|++..-
T Consensus 315 --gnikvlmatnrpdt-------------------------------ldpallrpgrldrkvef~lpdlegrt~i~kiha 361 (435)
T KOG0729|consen 315 --GNIKVLMATNRPDT-------------------------------LDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHA 361 (435)
T ss_pred --CCeEEEeecCCCCC-------------------------------cCHhhcCCcccccceeccCCcccccceeEEEec
Confidence 47889999997642 677777 8999999999998887777766554
Q ss_pred HHHHHHHHhCCCCccCCHHHH-HHHHhcCCCCCCCchHHHHHHHH
Q 002012 881 NRVKDRLKQKKIDLHYTKEAV-TLLGILGFDPNFGARPVKRVIQQ 924 (982)
Q Consensus 881 ~~~~~~~~~~~~~l~i~~~a~-~~L~~~~~~~~~gaR~L~~~i~~ 924 (982)
+. ..++.+.. +.|+..| +...| .+|++++..
T Consensus 362 ks-----------msverdir~ellarlc-pnstg-aeirsvcte 393 (435)
T KOG0729|consen 362 KS-----------MSVERDIRFELLARLC-PNSTG-AEIRSVCTE 393 (435)
T ss_pred cc-----------cccccchhHHHHHhhC-CCCcc-hHHHHHHHH
Confidence 43 33343333 5555543 22233 467766654
No 288
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.30 E-value=5.1e-12 Score=126.91 Aligned_cols=151 Identities=23% Similarity=0.358 Sum_probs=91.8
Q ss_pred cchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceE-EEeccccc--ccccccc--c
Q 002012 667 GQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALV-RIDMSEYM--EKHSVSR--L 741 (982)
Q Consensus 667 Gq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v-~i~~s~~~--~~~~~~~--l 741 (982)
||+.+++.+.+.+...+ -...+||+||+|+||+++|+.+|+.+++.+..-. .-.|.... ....+.. .
T Consensus 1 gq~~~~~~L~~~~~~~~--------l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~ 72 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGR--------LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFII 72 (162)
T ss_dssp S-HHHHHHHHHHHHCTC----------SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEE
T ss_pred CcHHHHHHHHHHHHcCC--------cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEE
Confidence 89999999988887431 1224899999999999999999999976543211 01111110 0001111 1
Q ss_pred cCCCCC--ccccccCCchhHHHhh----CCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEEecCC
Q 002012 742 VGAPPG--YVGYEEGGQLTEVVRR----RPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNI 815 (982)
Q Consensus 742 ~g~~~g--~vg~~~~~~l~~~l~~----~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~ 815 (982)
+..... .++.++.+.+.+.+.. +++.|++||++|+|+.+.+|+||+.||+- ..+++||++|+.
T Consensus 73 ~~~~~~~~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEep-----------p~~~~fiL~t~~ 141 (162)
T PF13177_consen 73 IKPDKKKKSIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEP-----------PENTYFILITNN 141 (162)
T ss_dssp EETTTSSSSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHST-----------TTTEEEEEEES-
T ss_pred EecccccchhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCC-----------CCCEEEEEEECC
Confidence 111111 1222222333333332 34679999999999999999999999983 257999999886
Q ss_pred ChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCC
Q 002012 816 GSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLD 868 (982)
Q Consensus 816 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~ 868 (982)
... +.|++.+|| ..+.|+|++
T Consensus 142 ~~~-------------------------------il~TI~SRc-~~i~~~~ls 162 (162)
T PF13177_consen 142 PSK-------------------------------ILPTIRSRC-QVIRFRPLS 162 (162)
T ss_dssp GGG-------------------------------S-HHHHTTS-EEEEE----
T ss_pred hHH-------------------------------ChHHHHhhc-eEEecCCCC
Confidence 543 788999999 789999875
No 289
>PRK06620 hypothetical protein; Validated
Probab=99.29 E-value=4.5e-11 Score=125.56 Aligned_cols=136 Identities=13% Similarity=0.121 Sum_probs=99.2
Q ss_pred CCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccccccccccHHHHHHHHHHHHHhcCCCeEEEEcc
Q 002012 291 NNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFIDE 370 (982)
Q Consensus 291 ~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDE 370 (982)
++++|+||||+|||++++++++.. +. +.+... .. .... ... ..+|+|||
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~----------~~--~~~~~~------~~-------~~~~---~~~---~d~lliDd 93 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS----------NA--YIIKDI------FF-------NEEI---LEK---YNAFIIED 93 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc----------CC--EEcchh------hh-------chhH---Hhc---CCEEEEec
Confidence 558999999999999999987754 22 111100 00 0011 111 23899999
Q ss_pred chhhhhCCCCCchhhHHHHHHhhhcCCCeEEEEecCchhHhhhhhcChHHHhccc---eEEecCCCHHHHHHHHHHHHHH
Q 002012 371 LHTIIGAGNQSGAMDASNMLKPMLGRGELRCIGATTLNEYRNYIEKDPALERRFQ---QVFCDQPSVENTISILRGLRER 447 (982)
Q Consensus 371 i~~l~~~~~~~~~~~~~~~L~~~le~g~i~vI~at~~~~~~~~~~~d~al~rRf~---~i~i~~Ps~~e~~~IL~~~~~~ 447 (982)
||.+. ...+.+++..+.+.|...+|++++++.+ +.+ |+|++||. .+.+.+|+.+++..+++.....
T Consensus 94 i~~~~-------~~~lf~l~N~~~e~g~~ilits~~~p~~---l~l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~ 162 (214)
T PRK06620 94 IENWQ-------EPALLHIFNIINEKQKYLLLTSSDKSRN---FTL-PDLSSRIKSVLSILLNSPDDELIKILIFKHFSI 162 (214)
T ss_pred cccch-------HHHHHHHHHHHHhcCCEEEEEcCCCccc---cch-HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHH
Confidence 99652 1345666677778999888888888873 346 89999997 8999999999999888777665
Q ss_pred HhhhcCCccChHHHHHHHHHhhhhh
Q 002012 448 YELHHGVKISDSALVSAAVLADRYI 472 (982)
Q Consensus 448 ~~~~~~v~i~~~~l~~~~~~s~r~i 472 (982)
.++.++++++++++..+.+-+
T Consensus 163 ----~~l~l~~ev~~~L~~~~~~d~ 183 (214)
T PRK06620 163 ----SSVTISRQIIDFLLVNLPREY 183 (214)
T ss_pred ----cCCCCCHHHHHHHHHHccCCH
Confidence 478999999999999876543
No 290
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=1.8e-11 Score=124.75 Aligned_cols=194 Identities=21% Similarity=0.391 Sum_probs=129.1
Q ss_pred hcccccchHHHHHHHHHHHHH--------hcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccc
Q 002012 662 HKRVIGQDIAVKSVADAIRRS--------RAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYM 733 (982)
Q Consensus 662 ~~~iiGq~~a~~~l~~~i~~~--------~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~ 733 (982)
..+|-|.+..++.+.++|... ..|+ +|+-.+|++||||||||.+|++.|..- +..|..+-...+
T Consensus 170 YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi----~pPKGvLmYGPPGTGKTlmARAcAaqT---~aTFLKLAgPQL- 241 (424)
T KOG0652|consen 170 YSDIGGLDKQIQELVEAIVLPMTHKEKFENLGI----RPPKGVLMYGPPGTGKTLMARACAAQT---NATFLKLAGPQL- 241 (424)
T ss_pred ccccccHHHHHHHHHHHhccccccHHHHHhcCC----CCCCceEeeCCCCCcHHHHHHHHHHhc---cchHHHhcchHH-
Confidence 367889999999999988322 2233 233349999999999999999999764 455554444433
Q ss_pred cccccccccCCCCCccccccCCchhHHHhhCCCeEEEEccccccC-----------HHHHHHHHHhhhc--CceecCCCc
Q 002012 734 EKHSVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEIEKAH-----------QDVFNILLQLLDD--GRITDSQGR 800 (982)
Q Consensus 734 ~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~~~~~Vl~lDEidkl~-----------~~~~~~Ll~~le~--g~~~d~~g~ 800 (982)
+..++|.....+ +.-+...++..++||||||+|... .++|..+|.+|.. |--.+
T Consensus 242 ----VQMfIGdGAkLV-----RDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~---- 308 (424)
T KOG0652|consen 242 ----VQMFIGDGAKLV-----RDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSD---- 308 (424)
T ss_pred ----HhhhhcchHHHH-----HHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCc----
Confidence 334455422111 223455666778999999999763 4688888888753 22111
Q ss_pred EEecccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHH--hccccccccCCCChhHHHHHHHH
Q 002012 801 TVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFL--NRIDEYIVFQPLDSKEISKIVEI 878 (982)
Q Consensus 801 ~~~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll--~Rid~ii~F~pl~~~~l~~il~~ 878 (982)
.++-+|++||.-. .++|+|+ +|+|..|.||-++.+...+|++.
T Consensus 309 ----~~vKviAATNRvD-------------------------------iLDPALlRSGRLDRKIEfP~Pne~aRarIlQI 353 (424)
T KOG0652|consen 309 ----DRVKVIAATNRVD-------------------------------ILDPALLRSGRLDRKIEFPHPNEEARARILQI 353 (424)
T ss_pred ----cceEEEeeccccc-------------------------------ccCHHHhhcccccccccCCCCChHHHHHHHHH
Confidence 3578999999632 1678887 89999999999999999998887
Q ss_pred HHHHHHHHHHhCCCCccCCHHH-HHHHHhcCCCCCCCchHHHHHHHH
Q 002012 879 QMNRVKDRLKQKKIDLHYTKEA-VTLLGILGFDPNFGARPVKRVIQQ 924 (982)
Q Consensus 879 ~l~~~~~~~~~~~~~l~i~~~a-~~~L~~~~~~~~~gaR~L~~~i~~ 924 (982)
.-++ ..+++++ .+.|+.. ...|++..|+.++-.
T Consensus 354 HsRK-----------Mnv~~DvNfeELaRs--TddFNGAQcKAVcVE 387 (424)
T KOG0652|consen 354 HSRK-----------MNVSDDVNFEELARS--TDDFNGAQCKAVCVE 387 (424)
T ss_pred hhhh-----------cCCCCCCCHHHHhhc--ccccCchhheeeehh
Confidence 6554 3344443 3556653 234555566655543
No 291
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.29 E-value=5e-11 Score=133.37 Aligned_cols=174 Identities=17% Similarity=0.210 Sum_probs=122.5
Q ss_pred CCCCcccchHHHHHHHHHhccCCCCCc-EEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEeccccccccccccc
Q 002012 267 KLDPVIGRDDEIRRCIQILSRRTKNNP-VIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGTCYRGD 345 (982)
Q Consensus 267 ~l~~liG~~~~i~~l~~~L~~~~~~~i-LL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~~~~g~ 345 (982)
.|++++|++..++.+.+.+..+..+|+ ||+||+|+|||++|+.+|+.+.+...... ...++.+... .|.. -
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~--h~D~~~~~~~---~~~~---i 73 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQRE--YVDIIEFKPI---NKKS---I 73 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCC--CCCeEEeccc---cCCC---C
Confidence 478999999999999999988777776 78999999999999999999865432211 1123333211 1111 1
Q ss_pred HHHHHHHHHHHHHh---cCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcC--CCeEEEEecCchhHhhhhhcChHH
Q 002012 346 FEKRLKAVLKEVTK---SNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGR--GELRCIGATTLNEYRNYIEKDPAL 420 (982)
Q Consensus 346 ~e~~l~~l~~~~~~---~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~--g~i~vI~at~~~~~~~~~~~d~al 420 (982)
..+.++++.+.+.. .++.-|++||++|.+. ..++|.|+..+++ ..+.+|.+|+..+ .+.|++
T Consensus 74 ~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~--------~~a~naLLK~LEepp~~t~~il~~~~~~-----~ll~TI 140 (313)
T PRK05564 74 GVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMT--------EQAQNAFLKTIEEPPKGVFIILLCENLE-----QILDTI 140 (313)
T ss_pred CHHHHHHHHHHHhcCcccCCceEEEEechhhcC--------HHHHHHHHHHhcCCCCCeEEEEEeCChH-----hCcHHH
Confidence 12235555554432 1345699999999986 6678889999984 4566777666555 688999
Q ss_pred HhccceEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhh
Q 002012 421 ERRFQQVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLAD 469 (982)
Q Consensus 421 ~rRf~~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~ 469 (982)
++||+.+.+..|+.++....+..... .++++.+..++.+++
T Consensus 141 ~SRc~~~~~~~~~~~~~~~~l~~~~~--------~~~~~~~~~l~~~~~ 181 (313)
T PRK05564 141 KSRCQIYKLNRLSKEEIEKFISYKYN--------DIKEEEKKSAIAFSD 181 (313)
T ss_pred HhhceeeeCCCcCHHHHHHHHHHHhc--------CCCHHHHHHHHHHcC
Confidence 99999999999999988777653221 366677777777755
No 292
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.29 E-value=1.3e-11 Score=139.72 Aligned_cols=181 Identities=23% Similarity=0.368 Sum_probs=132.7
Q ss_pred CCCCCcccchHHHHHHHHHhcc--CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccc-----
Q 002012 266 GKLDPVIGRDDEIRRCIQILSR--RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVA----- 338 (982)
Q Consensus 266 ~~l~~liG~~~~i~~l~~~L~~--~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~----- 338 (982)
-+|+++||.+..+.++++...+ ++..++||.|++||||..+|+++.+.-.+. +.+|+.+||+++..
T Consensus 242 y~f~~Iig~S~~m~~~~~~akr~A~tdstVLi~GESGTGKElfA~~IH~~S~R~-------~~PFIaiNCaAiPe~LlES 314 (560)
T COG3829 242 YTFDDIIGESPAMLRVLELAKRIAKTDSTVLILGESGTGKELFARAIHNLSPRA-------NGPFIAINCAAIPETLLES 314 (560)
T ss_pred cchhhhccCCHHHHHHHHHHHhhcCCCCcEEEecCCCccHHHHHHHHHhcCccc-------CCCeEEEecccCCHHHHHH
Confidence 4799999999999999987665 567789999999999999999999876443 78999999988763
Q ss_pred ---cccccccHHHHH----HHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCC-------------C
Q 002012 339 ---GTCYRGDFEKRL----KAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRG-------------E 398 (982)
Q Consensus 339 ---~~~~~g~~e~~l----~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g-------------~ 398 (982)
|. ..|.|.... ..+|+.+ +++ -||+|||..|. ...+.-|+.+|+.+ +
T Consensus 315 ELFGy-e~GAFTGA~~~GK~GlfE~A---~gG-TLFLDEIgemp--------l~LQaKLLRVLQEkei~rvG~t~~~~vD 381 (560)
T COG3829 315 ELFGY-EKGAFTGASKGGKPGLFELA---NGG-TLFLDEIGEMP--------LPLQAKLLRVLQEKEIERVGGTKPIPVD 381 (560)
T ss_pred HHhCc-CCccccccccCCCCcceeec---cCC-eEEehhhccCC--------HHHHHHHHHHHhhceEEecCCCCceeeE
Confidence 11 122222221 2344433 444 69999999986 67788899988643 5
Q ss_pred eEEEEecCchhHhhhhhcChHHH----hccceEEecCCC----HHHHHHHHHHHHHHHhhhcC--C-ccChHHHHHHHHH
Q 002012 399 LRCIGATTLNEYRNYIEKDPALE----RRFQQVFCDQPS----VENTISILRGLRERYELHHG--V-KISDSALVSAAVL 467 (982)
Q Consensus 399 i~vI~at~~~~~~~~~~~d~al~----rRf~~i~i~~Ps----~~e~~~IL~~~~~~~~~~~~--v-~i~~~~l~~~~~~ 467 (982)
|++|+|||.+. .+.+ -+..|+ -|+..+.+..|. ++|+..+.+.+.++|...++ + .++++++..+..+
T Consensus 382 VRIIAATN~nL-~~~i-~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a~~~L~~y 459 (560)
T COG3829 382 VRIIAATNRNL-EKMI-AEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDALALLLRY 459 (560)
T ss_pred EEEEeccCcCH-HHHH-hcCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHhC
Confidence 79999999875 2222 233344 488888888876 66777777888888877665 3 3789999888777
Q ss_pred h
Q 002012 468 A 468 (982)
Q Consensus 468 s 468 (982)
.
T Consensus 460 ~ 460 (560)
T COG3829 460 D 460 (560)
T ss_pred C
Confidence 3
No 293
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=4.8e-12 Score=130.98 Aligned_cols=166 Identities=27% Similarity=0.423 Sum_probs=122.2
Q ss_pred hhcccccchHHHHHHHHHHHHHh--------cCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEecccc
Q 002012 661 LHKRVIGQDIAVKSVADAIRRSR--------AGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEY 732 (982)
Q Consensus 661 l~~~iiGq~~a~~~l~~~i~~~~--------~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~ 732 (982)
-..+|-|.+..++.|.+++.... .|+ +|+-.++++|+||||||.+|+++|+.- ...|+++-.+++
T Consensus 183 ty~diGGle~QiQEiKEsvELPLthPE~YeemGi----kpPKGVIlyG~PGTGKTLLAKAVANqT---SATFlRvvGseL 255 (440)
T KOG0726|consen 183 TYADIGGLESQIQEIKESVELPLTHPEYYEEMGI----KPPKGVILYGEPGTGKTLLAKAVANQT---SATFLRVVGSEL 255 (440)
T ss_pred hhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCC----CCCCeeEEeCCCCCchhHHHHHHhccc---chhhhhhhhHHH
Confidence 34678899999999999885321 222 333349999999999999999999874 567888877776
Q ss_pred ccccccccccCCCCCccccccCCchhHHHhhCCCeEEEEccccccC-----------HHHHHHHHHhhhcCceecCCCcE
Q 002012 733 MEKHSVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEIEKAH-----------QDVFNILLQLLDDGRITDSQGRT 801 (982)
Q Consensus 733 ~~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~~~~~Vl~lDEidkl~-----------~~~~~~Ll~~le~g~~~d~~g~~ 801 (982)
. .+++|..|..+ ++++.......++|+||||||... .++|..+|.+|..--=.|+.
T Consensus 256 i-----QkylGdGpklv-----RqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsr--- 322 (440)
T KOG0726|consen 256 I-----QKYLGDGPKLV-----RELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSR--- 322 (440)
T ss_pred H-----HHHhccchHHH-----HHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCcccc---
Confidence 3 44555544332 567888888889999999999874 35888888887531111222
Q ss_pred EecccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHH--hccccccccCCCChhHHHHHHHHH
Q 002012 802 VSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFL--NRIDEYIVFQPLDSKEISKIVEIQ 879 (982)
Q Consensus 802 ~~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll--~Rid~ii~F~pl~~~~l~~il~~~ 879 (982)
.++-+||+||.-.. ++|+|+ +|||..|.|+-++....++|+...
T Consensus 323 ---gDvKvimATnrie~-------------------------------LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IH 368 (440)
T KOG0726|consen 323 ---GDVKVIMATNRIET-------------------------------LDPALIRPGRIDRKIEFPLPDEKTKKKIFQIH 368 (440)
T ss_pred ---CCeEEEEecccccc-------------------------------cCHhhcCCCccccccccCCCchhhhceeEEEe
Confidence 46889999996322 677777 899999999999999888887655
Q ss_pred H
Q 002012 880 M 880 (982)
Q Consensus 880 l 880 (982)
-
T Consensus 369 T 369 (440)
T KOG0726|consen 369 T 369 (440)
T ss_pred e
Confidence 3
No 294
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.28 E-value=1.3e-11 Score=136.55 Aligned_cols=164 Identities=15% Similarity=0.262 Sum_probs=112.1
Q ss_pred cccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCC----CceEEEecccccccccccc
Q 002012 665 VIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTE----NALVRIDMSEYMEKHSVSR 740 (982)
Q Consensus 665 iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~----~~~v~i~~s~~~~~~~~~~ 740 (982)
..++....+.+.+++...+.. ..+||.||+|+||+++|+.+|+.+.+.+ .++-.+..........+.+
T Consensus 4 yPW~~~~~~~l~~~~~~~rl~--------HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD 75 (325)
T PRK06871 4 YPWLQPTYQQITQAFQQGLGH--------HALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPD 75 (325)
T ss_pred CcchHHHHHHHHHHHHcCCcc--------eeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCC
Confidence 457778888888888754322 2499999999999999999999997643 1211111001111112222
Q ss_pred c--cCCCCC-ccccccCCchhHHHhh----CCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEEec
Q 002012 741 L--VGAPPG-YVGYEEGGQLTEVVRR----RPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTS 813 (982)
Q Consensus 741 l--~g~~~g-~vg~~~~~~l~~~l~~----~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~ts 813 (982)
+ +....+ .++.++.+.+.+.+.. .++.|++||++|+|+...+|+||+.||+ +..+++||++|
T Consensus 76 ~~~i~p~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEE-----------Pp~~~~fiL~t 144 (325)
T PRK06871 76 FHILEPIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEE-----------PRPNTYFLLQA 144 (325)
T ss_pred EEEEccccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcC-----------CCCCeEEEEEE
Confidence 2 111011 2344444445455543 3457999999999999999999999998 23578999988
Q ss_pred CCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHH
Q 002012 814 NIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQ 879 (982)
Q Consensus 814 n~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~ 879 (982)
+.... +.|++++|| ..+.|+|++.+++.+.+...
T Consensus 145 ~~~~~-------------------------------llpTI~SRC-~~~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 145 DLSAA-------------------------------LLPTIYSRC-QTWLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred CChHh-------------------------------CchHHHhhc-eEEeCCCCCHHHHHHHHHHH
Confidence 86543 788999999 79999999999988777653
No 295
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.28 E-value=1.2e-11 Score=138.91 Aligned_cols=166 Identities=20% Similarity=0.302 Sum_probs=108.6
Q ss_pred hccccc-chHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCC----CceEEEecccccccc
Q 002012 662 HKRVIG-QDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTE----NALVRIDMSEYMEKH 736 (982)
Q Consensus 662 ~~~iiG-q~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~----~~~v~i~~s~~~~~~ 736 (982)
+..|+| |+.+++.+...+... +....+||+||+|+||+++|+.+|+.+++.+ .++-.+.........
T Consensus 4 ~~~i~~~q~~~~~~L~~~~~~~--------~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~ 75 (329)
T PRK08058 4 WEQLTALQPVVVKMLQNSIAKN--------RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSG 75 (329)
T ss_pred HHHHHhhHHHHHHHHHHHHHcC--------CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcC
Confidence 456777 999999998888642 2223489999999999999999999997543 111111000001111
Q ss_pred ccccccC-CCCC-ccccccCCchhHHHh----hCCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEE
Q 002012 737 SVSRLVG-APPG-YVGYEEGGQLTEVVR----RRPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVI 810 (982)
Q Consensus 737 ~~~~l~g-~~~g-~vg~~~~~~l~~~l~----~~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI 810 (982)
.+..+.- .+.| .++.++.+.+.+.+. .+++.|++|||+|.++...+|+|++.||+- ..+++||
T Consensus 76 ~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEP-----------p~~~~~I 144 (329)
T PRK08058 76 NHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEP-----------SGGTTAI 144 (329)
T ss_pred CCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCC-----------CCCceEE
Confidence 1111100 0111 122222223333333 234579999999999999999999999972 2468899
Q ss_pred EecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHH
Q 002012 811 MTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEI 878 (982)
Q Consensus 811 ~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~ 878 (982)
++|+... .+.|++.+|+ .++.|.|++.+++.+++..
T Consensus 145 l~t~~~~-------------------------------~ll~TIrSRc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 145 LLTENKH-------------------------------QILPTILSRC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred EEeCChH-------------------------------hCcHHHHhhc-eeeeCCCCCHHHHHHHHHH
Confidence 9887432 2778999999 7999999999998777753
No 296
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=99.27 E-value=1.3e-11 Score=136.32 Aligned_cols=164 Identities=17% Similarity=0.218 Sum_probs=110.6
Q ss_pred ccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCC-ceEEEeccccccccccccc-
Q 002012 664 RVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTEN-ALVRIDMSEYMEKHSVSRL- 741 (982)
Q Consensus 664 ~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~-~~v~i~~s~~~~~~~~~~l- 741 (982)
-..+|..+.+.+..++...+. | ..+||+||+|+||+++|..+|+.+++.+. +.-.+.+........+.++
T Consensus 5 ~yPW~~~~~~~l~~~~~~~rl-------~-HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~ 76 (319)
T PRK08769 5 FSPWQQRAYDQTVAALDAGRL-------G-HGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQ 76 (319)
T ss_pred ccccHHHHHHHHHHHHHcCCc-------c-eeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEE
Confidence 356788888888888874322 2 23999999999999999999999976431 1111111112222222222
Q ss_pred -cCCCCCc--------cccccCCchhHHHhhCC----CeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEE
Q 002012 742 -VGAPPGY--------VGYEEGGQLTEVVRRRP----YSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCV 808 (982)
Q Consensus 742 -~g~~~g~--------vg~~~~~~l~~~l~~~~----~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~i 808 (982)
+...+.. ++.++.+.+.+.+...| +.|++||++|+|+....|+||+.||+- ..+++
T Consensus 77 ~i~~~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEP-----------p~~~~ 145 (319)
T PRK08769 77 LVSFIPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEP-----------SPGRY 145 (319)
T ss_pred EEecCCCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCC-----------CCCCe
Confidence 2111211 12222233444444333 579999999999999999999999972 25788
Q ss_pred EEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHH
Q 002012 809 VIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEI 878 (982)
Q Consensus 809 iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~ 878 (982)
||++|+.... +.|++.+|| ..+.|.|++.+++...+..
T Consensus 146 fiL~~~~~~~-------------------------------lLpTIrSRC-q~i~~~~~~~~~~~~~L~~ 183 (319)
T PRK08769 146 LWLISAQPAR-------------------------------LPATIRSRC-QRLEFKLPPAHEALAWLLA 183 (319)
T ss_pred EEEEECChhh-------------------------------CchHHHhhh-eEeeCCCcCHHHHHHHHHH
Confidence 9998886543 778999999 7899999999888777754
No 297
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.27 E-value=1.2e-10 Score=135.39 Aligned_cols=188 Identities=16% Similarity=0.253 Sum_probs=119.9
Q ss_pred CCCCcc-cchHHH--HHHHHHhccC-CCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccccccc
Q 002012 267 KLDPVI-GRDDEI--RRCIQILSRR-TKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGTCY 342 (982)
Q Consensus 267 ~l~~li-G~~~~i--~~l~~~L~~~-~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~~~ 342 (982)
+|++.+ |.+... ..+.++.... ..++++|+||||+|||+|++++++.+.... .+..++++++.++....
T Consensus 103 tFdnFv~g~~n~~a~~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~-----~~~~v~yi~~~~f~~~~-- 175 (440)
T PRK14088 103 TFENFVVGPGNSFAYHAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNE-----PDLRVMYITSEKFLNDL-- 175 (440)
T ss_pred cccccccCCchHHHHHHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHhC-----CCCeEEEEEHHHHHHHH--
Confidence 566655 655432 3333333322 235688999999999999999999885432 25788888876544211
Q ss_pred cccH-HHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCCCeEEEEecCchhHhhhhhcChHHH
Q 002012 343 RGDF-EKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRGELRCIGATTLNEYRNYIEKDPALE 421 (982)
Q Consensus 343 ~g~~-e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g~i~vI~at~~~~~~~~~~~d~al~ 421 (982)
.... ...+..+..... ...-+|+|||++.+.+.. ....++..++..+.+.+...+|++...+.. .-.+.+.+.
T Consensus 176 ~~~~~~~~~~~f~~~~~--~~~dvLlIDDi~~l~~~~--~~q~elf~~~n~l~~~~k~iIitsd~~p~~--l~~l~~rL~ 249 (440)
T PRK14088 176 VDSMKEGKLNEFREKYR--KKVDVLLIDDVQFLIGKT--GVQTELFHTFNELHDSGKQIVICSDREPQK--LSEFQDRLV 249 (440)
T ss_pred HHHHhcccHHHHHHHHH--hcCCEEEEechhhhcCcH--HHHHHHHHHHHHHHHcCCeEEEECCCCHHH--HHHHHHHHh
Confidence 0000 011122222222 123489999999885321 112345566666666676554444334332 224678999
Q ss_pred hccc---eEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhh
Q 002012 422 RRFQ---QVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRY 471 (982)
Q Consensus 422 rRf~---~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~ 471 (982)
+||. .+.+.+|+.+.+..||+...+. .++.++++++.+++..+.+.
T Consensus 250 SR~~~gl~v~i~~pd~e~r~~IL~~~~~~----~~~~l~~ev~~~Ia~~~~~~ 298 (440)
T PRK14088 250 SRFQMGLVAKLEPPDEETRKKIARKMLEI----EHGELPEEVLNFVAENVDDN 298 (440)
T ss_pred hHHhcCceEeeCCCCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHhccccC
Confidence 9996 8899999999999999887765 57889999999999886643
No 298
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.27 E-value=6.5e-11 Score=140.13 Aligned_cols=214 Identities=17% Similarity=0.198 Sum_probs=138.8
Q ss_pred hhcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcC----C---CCceEEEeccccc
Q 002012 661 LHKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFN----T---ENALVRIDMSEYM 733 (982)
Q Consensus 661 l~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~----~---~~~~v~i~~s~~~ 733 (982)
.-+.+.|.++.++.|..++..+..+. .|...++++|+||||||.+++.+.+.+-. . ...++.|||..+.
T Consensus 753 VPD~LPhREeEIeeLasfL~paIkgs----gpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Ls 828 (1164)
T PTZ00112 753 VPKYLPCREKEIKEVHGFLESGIKQS----GSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVV 828 (1164)
T ss_pred CCCcCCChHHHHHHHHHHHHHHHhcC----CCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccC
Confidence 34678999999999999998776542 22223569999999999999999887721 1 1457899997765
Q ss_pred cccccc-----cccCCCCCccccccC---CchhHHHhh--CCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEe
Q 002012 734 EKHSVS-----RLVGAPPGYVGYEEG---GQLTEVVRR--RPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVS 803 (982)
Q Consensus 734 ~~~~~~-----~l~g~~~g~vg~~~~---~~l~~~l~~--~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~ 803 (982)
....+. .+.|..+. .|.... ..++..+.. ....||+|||||.+....++.|+.+++.....
T Consensus 829 tp~sIYqvI~qqL~g~~P~-~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s-------- 899 (1164)
T PTZ00112 829 HPNAAYQVLYKQLFNKKPP-NALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKI-------- 899 (1164)
T ss_pred CHHHHHHHHHHHHcCCCCC-ccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhcc--------
Confidence 544322 23344332 121111 112222211 22459999999999877788899888742211
Q ss_pred cccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhcccc-ccccCCCChhHHHHHHHHHHHH
Q 002012 804 FTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDE-YIVFQPLDSKEISKIVEIQMNR 882 (982)
Q Consensus 804 ~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~-ii~F~pl~~~~l~~il~~~l~~ 882 (982)
-..++||+++|.-.- . ..+.|.+.+|+.. .|.|+||+.+++.+|+...+..
T Consensus 900 ~SKLiLIGISNdlDL--p--------------------------erLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~ 951 (1164)
T PTZ00112 900 NSKLVLIAISNTMDL--P--------------------------ERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLEN 951 (1164)
T ss_pred CCeEEEEEecCchhc--c--------------------------hhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHh
Confidence 135889999984210 0 1145667777743 5899999999999999988875
Q ss_pred HHHHHHhCCCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHH
Q 002012 883 VKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQ 924 (982)
Q Consensus 883 ~~~~~~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~ 924 (982)
. .-.++++|++++++........||..-.+++.
T Consensus 952 A---------~gVLdDdAIELIArkVAq~SGDARKALDILRr 984 (1164)
T PTZ00112 952 C---------KEIIDHTAIQLCARKVANVSGDIRKALQICRK 984 (1164)
T ss_pred C---------CCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHH
Confidence 2 13599999999998543322224444343333
No 299
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.27 E-value=9.5e-11 Score=130.02 Aligned_cols=194 Identities=17% Similarity=0.174 Sum_probs=128.0
Q ss_pred CCCCcccchHHHHHHHHHhccCC-CCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCC--------CCCCeEEEEeccccc
Q 002012 267 KLDPVIGRDDEIRRCIQILSRRT-KNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPET--------LQNRKLISLDMASLV 337 (982)
Q Consensus 267 ~l~~liG~~~~i~~l~~~L~~~~-~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~--------l~~~~v~~l~~~~l~ 337 (982)
.|++++|+++.++.+...+..+. .+..||+||+|+||+++|.++|+.+.+...+.. .....++.+.+....
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~ 81 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQH 81 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccc
Confidence 46789999999999999987765 456788999999999999999999977542211 111222333321111
Q ss_pred cccc-------ccc--------cHHHHHHHHHHHHHhc---CCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhc-CCC
Q 002012 338 AGTC-------YRG--------DFEKRLKAVLKEVTKS---NGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLG-RGE 398 (982)
Q Consensus 338 ~~~~-------~~g--------~~e~~l~~l~~~~~~~---~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le-~g~ 398 (982)
.|.. ..| -..+.++++.+.+... ++.-|++||++|.|. ..++|.|+..|| .++
T Consensus 82 ~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~--------~~aaNaLLK~LEEPp~ 153 (314)
T PRK07399 82 QGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMN--------EAAANALLKTLEEPGN 153 (314)
T ss_pred cccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcC--------HHHHHHHHHHHhCCCC
Confidence 1110 000 0112344554444421 455699999999996 567788888887 346
Q ss_pred eEEEEecCchhHhhhhhcChHHHhccceEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCCc
Q 002012 399 LRCIGATTLNEYRNYIEKDPALERRFQQVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLP 478 (982)
Q Consensus 399 i~vI~at~~~~~~~~~~~d~al~rRf~~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~p 478 (982)
..+|..|+..+ .+-|++++||+.+.|..|+.+++.++|...... .+ .+.....++.++. ..|
T Consensus 154 ~~fILi~~~~~-----~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~----~~---~~~~~~~l~~~a~------Gs~ 215 (314)
T PRK07399 154 GTLILIAPSPE-----SLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDE----EI---LNINFPELLALAQ------GSP 215 (314)
T ss_pred CeEEEEECChH-----hCcHHHHhhceEEecCCCCHHHHHHHHHHhhcc----cc---chhHHHHHHHHcC------CCH
Confidence 67888887776 789999999999999999999998888754321 11 1112345556654 346
Q ss_pred chhhHHHH
Q 002012 479 DKAIDLVD 486 (982)
Q Consensus 479 ~~a~~lld 486 (982)
.+++++++
T Consensus 216 ~~al~~l~ 223 (314)
T PRK07399 216 GAAIANIE 223 (314)
T ss_pred HHHHHHHH
Confidence 67776654
No 300
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.26 E-value=1.4e-10 Score=136.23 Aligned_cols=187 Identities=14% Similarity=0.229 Sum_probs=120.1
Q ss_pred CCCCcc-cchHHH--HHHHHHhcc-CC-CCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEeccccccccc
Q 002012 267 KLDPVI-GRDDEI--RRCIQILSR-RT-KNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGTC 341 (982)
Q Consensus 267 ~l~~li-G~~~~i--~~l~~~L~~-~~-~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~~ 341 (982)
+|+++| |..+.+ ..+..++.. .. .+.++|+|++|+|||+|++++++.+.... .+..++++++..+...
T Consensus 286 TFDnFvvG~sN~~A~aaa~avae~~~~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~-----~g~~V~Yitaeef~~e-- 358 (617)
T PRK14086 286 TFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARRLY-----PGTRVRYVSSEEFTNE-- 358 (617)
T ss_pred CHhhhcCCCccHHHHHHHHHHHhCccccCCcEEEECCCCCCHHHHHHHHHHHHHHhC-----CCCeEEEeeHHHHHHH--
Confidence 455544 555532 223333322 12 23478899999999999999999885421 2678889887665532
Q ss_pred ccccHHH-HHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCCCeEEEEecCchhHhhhhhcChHH
Q 002012 342 YRGDFEK-RLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRGELRCIGATTLNEYRNYIEKDPAL 420 (982)
Q Consensus 342 ~~g~~e~-~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g~i~vI~at~~~~~~~~~~~d~al 420 (982)
+...... .+..+.+.+... -+|+||||+.+.+.. .....+.+++..+.+++.-++| +++... ..+-.+++.|
T Consensus 359 l~~al~~~~~~~f~~~y~~~---DLLlIDDIq~l~gke--~tqeeLF~l~N~l~e~gk~III-TSd~~P-~eL~~l~~rL 431 (617)
T PRK14086 359 FINSIRDGKGDSFRRRYREM---DILLVDDIQFLEDKE--STQEEFFHTFNTLHNANKQIVL-SSDRPP-KQLVTLEDRL 431 (617)
T ss_pred HHHHHHhccHHHHHHHhhcC---CEEEEehhccccCCH--HHHHHHHHHHHHHHhcCCCEEE-ecCCCh-HhhhhccHHH
Confidence 1111111 111222223322 389999999885322 2234566666666666654444 444432 1233578999
Q ss_pred Hhccc---eEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhh
Q 002012 421 ERRFQ---QVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRY 471 (982)
Q Consensus 421 ~rRf~---~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~ 471 (982)
.+||. .+.|..|+.+.+..||+..... .++.++++++.+++....+.
T Consensus 432 ~SRf~~GLvv~I~~PD~EtR~aIL~kka~~----r~l~l~~eVi~yLa~r~~rn 481 (617)
T PRK14086 432 RNRFEWGLITDVQPPELETRIAILRKKAVQ----EQLNAPPEVLEFIASRISRN 481 (617)
T ss_pred HhhhhcCceEEcCCCCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHhccCC
Confidence 99994 7899999999999999887766 58999999999998875543
No 301
>PRK05642 DNA replication initiation factor; Validated
Probab=99.25 E-value=1.2e-10 Score=124.36 Aligned_cols=164 Identities=15% Similarity=0.263 Sum_probs=116.8
Q ss_pred eEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccccccccCCCCCccccccCCchhHHHhhCCCeEEEEccc
Q 002012 695 SFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEI 774 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~~~~~Vl~lDEi 774 (982)
+++|+||+|+|||++++++++.+...+..++++++.++... ...+.+.+..+ .+|+||++
T Consensus 47 ~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~------------------~~~~~~~~~~~--d~LiiDDi 106 (234)
T PRK05642 47 LIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR------------------GPELLDNLEQY--ELVCLDDL 106 (234)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh------------------hHHHHHhhhhC--CEEEEech
Confidence 48999999999999999999887555567777877665321 01234445544 49999999
Q ss_pred cccC--HHHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcCh
Q 002012 775 EKAH--QDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRP 852 (982)
Q Consensus 775 dkl~--~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p 852 (982)
+... +..+..|+.+++.- .+ .+..+|+|++..+..+. .+.|
T Consensus 107 ~~~~~~~~~~~~Lf~l~n~~--~~--------~g~~ilits~~~p~~l~---------------------------~~~~ 149 (234)
T PRK05642 107 DVIAGKADWEEALFHLFNRL--RD--------SGRRLLLAASKSPRELP---------------------------IKLP 149 (234)
T ss_pred hhhcCChHHHHHHHHHHHHH--Hh--------cCCEEEEeCCCCHHHcC---------------------------ccCc
Confidence 9774 46677788887641 11 13467788876554221 1468
Q ss_pred HHHhccc--cccccCCCChhHHHHHHHHHHHHHHHHHHhCCCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHHHHH
Q 002012 853 EFLNRID--EYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVE 927 (982)
Q Consensus 853 ~ll~Rid--~ii~F~pl~~~~l~~il~~~l~~~~~~~~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~l~ 927 (982)
++.+|+. .++.+.|++.+++..+++..... .+ +.++++++++|+.+ ++. .+|.+...++.+..
T Consensus 150 ~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~-------~~--~~l~~ev~~~L~~~-~~~--d~r~l~~~l~~l~~ 214 (234)
T PRK05642 150 DLKSRLTLALVFQMRGLSDEDKLRALQLRASR-------RG--LHLTDEVGHFILTR-GTR--SMSALFDLLERLDQ 214 (234)
T ss_pred cHHHHHhcCeeeecCCCCHHHHHHHHHHHHHH-------cC--CCCCHHHHHHHHHh-cCC--CHHHHHHHHHHHHH
Confidence 8999994 46778999999999998865432 34 78999999999997 333 35888888888543
No 302
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.25 E-value=9.8e-11 Score=130.28 Aligned_cols=224 Identities=21% Similarity=0.240 Sum_probs=145.1
Q ss_pred hhhHHHhhcC-CCCCcccchHHHHHHHHHhccCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEE------
Q 002012 257 NDLTELARSG-KLDPVIGRDDEIRRCIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLI------ 329 (982)
Q Consensus 257 ~~l~~~~~~~-~l~~liG~~~~i~~l~~~L~~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~------ 329 (982)
++|++..++- .|..+||+++....++..+......++||.||+|||||++|+.+++.+....+.. ++++.
T Consensus 4 ~~~~~~~~~~~pf~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~---~~pf~~~p~~p 80 (350)
T CHL00081 4 NNLKKKERPVFPFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVK---DDPFNSHPSDP 80 (350)
T ss_pred cchhhccCCCCCHHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccC---CCCCCCCCCCh
Confidence 3455554443 6788999999999998888887788999999999999999999999886543221 11111
Q ss_pred ----------------------EEeccccccc---ccccc--cHHHHHHHHHH-----HHHhcCCCeEEEEccchhhhhC
Q 002012 330 ----------------------SLDMASLVAG---TCYRG--DFEKRLKAVLK-----EVTKSNGQIILFIDELHTIIGA 377 (982)
Q Consensus 330 ----------------------~l~~~~l~~~---~~~~g--~~e~~l~~l~~-----~~~~~~~~~IL~IDEi~~l~~~ 377 (982)
.+.+..+..+ ....| +.+..+..-.. .+...+ +.+|||||++.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~-~GiL~lDEInrL~-- 157 (350)
T CHL00081 81 ELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKAN-RGILYVDEVNLLD-- 157 (350)
T ss_pred hhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecC-CCEEEecChHhCC--
Confidence 0000111100 00111 11111110000 011112 3489999999986
Q ss_pred CCCCchhhHHHHHHhhhcCC---------------CeEEEEecCchhHhhhhhcChHHHhccc-eEEecCCC-HHHHHHH
Q 002012 378 GNQSGAMDASNMLKPMLGRG---------------ELRCIGATTLNEYRNYIEKDPALERRFQ-QVFCDQPS-VENTISI 440 (982)
Q Consensus 378 ~~~~~~~~~~~~L~~~le~g---------------~i~vI~at~~~~~~~~~~~d~al~rRf~-~i~i~~Ps-~~e~~~I 440 (982)
...++.|+.+++.+ ++++|+++|+.+. .+.+++..||. .+.+..|+ .++..+|
T Consensus 158 ------~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg----~l~~~LldRf~l~i~l~~~~~~~~e~~i 227 (350)
T CHL00081 158 ------DHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEG----ELRPQLLDRFGMHAEIRTVKDPELRVKI 227 (350)
T ss_pred ------HHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccC----CCCHHHHHHhCceeecCCCCChHHHHHH
Confidence 56677788887643 3566777776642 58999999997 88999997 5888888
Q ss_pred HHHHHH----------HHh---------------hhcCCccChHHHHHHHHHhhhhhccCCCcchhhHHHHHHHHHhhhh
Q 002012 441 LRGLRE----------RYE---------------LHHGVKISDSALVSAAVLADRYITERFLPDKAIDLVDEAAAKLKME 495 (982)
Q Consensus 441 L~~~~~----------~~~---------------~~~~v~i~~~~l~~~~~~s~r~i~~~~~p~~a~~lld~a~~~~~~~ 495 (982)
++.... .|. .-..|.++++.+.++++++...- ...|+..+.++..|.+.+.+.
T Consensus 228 l~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~--~~s~Ra~i~l~raArA~Aal~ 305 (350)
T CHL00081 228 VEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELD--VDGLRGDIVTNRAAKALAAFE 305 (350)
T ss_pred HHhhhccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHC--CCCChHHHHHHHHHHHHHHHc
Confidence 865321 110 01357889999999988877532 235888888888888888877
Q ss_pred ccC
Q 002012 496 ITS 498 (982)
Q Consensus 496 ~~~ 498 (982)
...
T Consensus 306 GR~ 308 (350)
T CHL00081 306 GRT 308 (350)
T ss_pred CCC
Confidence 653
No 303
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=6.5e-11 Score=127.91 Aligned_cols=210 Identities=16% Similarity=0.290 Sum_probs=139.9
Q ss_pred hcccccchHHHHHHHHHHHHH--------hcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccc
Q 002012 662 HKRVIGQDIAVKSVADAIRRS--------RAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYM 733 (982)
Q Consensus 662 ~~~iiGq~~a~~~l~~~i~~~--------~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~ 733 (982)
+.+|-|.+.+++++.+.+... +.++. +|...+|++||||||||.+|+++|+.. +.+|+-+.++.+.
T Consensus 91 f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll---~p~kGiLL~GPpG~GKTmlAKA~Akea---ga~fInv~~s~lt 164 (386)
T KOG0737|consen 91 FDDIGGLEEVKDALQELVILPLRRPELFAKGKLL---RPPKGILLYGPPGTGKTMLAKAIAKEA---GANFINVSVSNLT 164 (386)
T ss_pred hhhccchHHHHHHHHHHHhhcccchhhhcccccc---cCCccceecCCCCchHHHHHHHHHHHc---CCCcceeeccccc
Confidence 356677777777777666321 11222 333359999999999999999999997 8899999999887
Q ss_pred cccccccccCCCCCccccccCCchhHHHhhCCCeEEEEccccccC-------HHHH----HHHHHhhhcCceecCCCcEE
Q 002012 734 EKHSVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEIEKAH-------QDVF----NILLQLLDDGRITDSQGRTV 802 (982)
Q Consensus 734 ~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~~~~~Vl~lDEidkl~-------~~~~----~~Ll~~le~g~~~d~~g~~~ 802 (982)
+++ +|....++ .-++....+-.++||||||+|.+- .++. +.+...-| |-.++..
T Consensus 165 ~KW-----fgE~eKlv-----~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WD-Gl~s~~~---- 229 (386)
T KOG0737|consen 165 SKW-----FGEAQKLV-----KAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWD-GLSSKDS---- 229 (386)
T ss_pred hhh-----HHHHHHHH-----HHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhc-cccCCCC----
Confidence 643 33322221 234556667778999999999873 2222 22222222 3333221
Q ss_pred ecccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHHH
Q 002012 803 SFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNR 882 (982)
Q Consensus 803 ~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~ 882 (982)
..++++.+||.+.+ ++.++++|+...+...-++..+.++|+...++.
T Consensus 230 --~rVlVlgATNRP~D-------------------------------lDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~ 276 (386)
T KOG0737|consen 230 --ERVLVLGATNRPFD-------------------------------LDEAIIRRLPRRFHVGLPDAEQRRKILKVILKK 276 (386)
T ss_pred --ceEEEEeCCCCCcc-------------------------------HHHHHHHhCcceeeeCCCchhhHHHHHHHHhcc
Confidence 24677778998765 566888999888888888899999999999876
Q ss_pred HHHHHHhCCCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHcC
Q 002012 883 VKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAILKG 937 (982)
Q Consensus 883 ~~~~~~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~l~~~la~~~l~~ 937 (982)
..+.-.++ ++.++.. ...|..++|+..+......++-+.+..+
T Consensus 277 -------e~~e~~vD---~~~iA~~--t~GySGSDLkelC~~Aa~~~ire~~~~~ 319 (386)
T KOG0737|consen 277 -------EKLEDDVD---LDEIAQM--TEGYSGSDLKELCRLAALRPIRELLVSE 319 (386)
T ss_pred -------cccCcccC---HHHHHHh--cCCCcHHHHHHHHHHHhHhHHHHHHHhc
Confidence 22222222 2334432 2345568999999998888886666553
No 304
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.25 E-value=1.6e-10 Score=119.53 Aligned_cols=159 Identities=21% Similarity=0.212 Sum_probs=107.4
Q ss_pred HHHHhccCCC-CCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCC---------------CCCeEEEEecccccccccccc
Q 002012 281 CIQILSRRTK-NNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETL---------------QNRKLISLDMASLVAGTCYRG 344 (982)
Q Consensus 281 l~~~L~~~~~-~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l---------------~~~~v~~l~~~~l~~~~~~~g 344 (982)
+.+.+..+.. +.+||+||+|+|||++|+.+++.+.+.. +... ....+..++... + .
T Consensus 4 l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~-~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~-~--- 75 (188)
T TIGR00678 4 LKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQ-PGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---Q-S--- 75 (188)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCCCcEEEecccc---C-c---
Confidence 3444444444 4588999999999999999999986531 1000 011122222111 0 0
Q ss_pred cHHHHHHHHHHHHHh---cCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcC--CCeEEEEecCchhHhhhhhcChH
Q 002012 345 DFEKRLKAVLKEVTK---SNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGR--GELRCIGATTLNEYRNYIEKDPA 419 (982)
Q Consensus 345 ~~e~~l~~l~~~~~~---~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~--g~i~vI~at~~~~~~~~~~~d~a 419 (982)
...+.++.+++.+.. .++..|++|||+|.+. .+.++.|+..++. ....+|++|+... .+.++
T Consensus 76 ~~~~~i~~i~~~~~~~~~~~~~kviiide~~~l~--------~~~~~~Ll~~le~~~~~~~~il~~~~~~-----~l~~~ 142 (188)
T TIGR00678 76 IKVDQVRELVEFLSRTPQESGRRVVIIEDAERMN--------EAAANALLKTLEEPPPNTLFILITPSPE-----KLLPT 142 (188)
T ss_pred CCHHHHHHHHHHHccCcccCCeEEEEEechhhhC--------HHHHHHHHHHhcCCCCCeEEEEEECChH-----hChHH
Confidence 112345555655543 2445699999999996 4567788888875 3477777777553 68999
Q ss_pred HHhccceEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhh
Q 002012 420 LERRFQQVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADR 470 (982)
Q Consensus 420 l~rRf~~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r 470 (982)
+++|+..+.+.+|+.+++..+|+.. + ++++++..++..+++
T Consensus 143 i~sr~~~~~~~~~~~~~~~~~l~~~--------g--i~~~~~~~i~~~~~g 183 (188)
T TIGR00678 143 IRSRCQVLPFPPLSEEALLQWLIRQ--------G--ISEEAAELLLALAGG 183 (188)
T ss_pred HHhhcEEeeCCCCCHHHHHHHHHHc--------C--CCHHHHHHHHHHcCC
Confidence 9999999999999999988888643 3 788889888888764
No 305
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.25 E-value=4.7e-11 Score=134.55 Aligned_cols=152 Identities=23% Similarity=0.335 Sum_probs=111.1
Q ss_pred CcccchHHHHHHHHHhccCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccccccccccHHHH
Q 002012 270 PVIGRDDEIRRCIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGTCYRGDFEKR 349 (982)
Q Consensus 270 ~liG~~~~i~~l~~~L~~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~~~~g~~e~~ 349 (982)
.++|+++.+..++..+.. ..|++|.||||||||++|+.+|+.+ +.+++.+.+..-.......|...-.
T Consensus 25 ~~~g~~~~~~~~l~a~~~--~~~vll~G~PG~gKT~la~~lA~~l----------~~~~~~i~~t~~l~p~d~~G~~~~~ 92 (329)
T COG0714 25 VVVGDEEVIELALLALLA--GGHVLLEGPPGVGKTLLARALARAL----------GLPFVRIQCTPDLLPSDLLGTYAYA 92 (329)
T ss_pred eeeccHHHHHHHHHHHHc--CCCEEEECCCCccHHHHHHHHHHHh----------CCCeEEEecCCCCCHHHhcCchhHh
Confidence 388999999888877665 4489999999999999999999999 7889999887665544444443332
Q ss_pred HHH----HHHHHHhc---CCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcC--------------CCeEEEEecCch
Q 002012 350 LKA----VLKEVTKS---NGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGR--------------GELRCIGATTLN 408 (982)
Q Consensus 350 l~~----l~~~~~~~---~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~--------------g~i~vI~at~~~ 408 (982)
... .+.-.... +-.+|+|+|||++.. ..+++.|+++|+. ..+.+|+|+|+.
T Consensus 93 ~~~~~~~~~~~~~gpl~~~~~~ill~DEInra~--------p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~ 164 (329)
T COG0714 93 ALLLEPGEFRFVPGPLFAAVRVILLLDEINRAP--------PEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPG 164 (329)
T ss_pred hhhccCCeEEEecCCcccccceEEEEeccccCC--------HHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCcc
Confidence 210 01000000 001399999999875 7788999999964 245778888988
Q ss_pred hHhhhhhcChHHHhcc-ceEEecCCC-HHHHHHHH
Q 002012 409 EYRNYIEKDPALERRF-QQVFCDQPS-VENTISIL 441 (982)
Q Consensus 409 ~~~~~~~~d~al~rRf-~~i~i~~Ps-~~e~~~IL 441 (982)
+|.....+++++++|| -.+++..|. ..+...++
T Consensus 165 e~~g~~~l~eA~ldRf~~~~~v~yp~~~~e~~~i~ 199 (329)
T COG0714 165 EYEGTYPLPEALLDRFLLRIYVDYPDSEEEERIIL 199 (329)
T ss_pred ccCCCcCCCHHHHhhEEEEEecCCCCchHHHHHHH
Confidence 8888888999999999 599999994 44444443
No 306
>PRK04132 replication factor C small subunit; Provisional
Probab=99.24 E-value=7.5e-11 Score=143.93 Aligned_cols=164 Identities=19% Similarity=0.262 Sum_probs=130.5
Q ss_pred CCcEEeC--CCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccccccccccHHHHHHHHHHHHHhc---C--CC
Q 002012 291 NNPVIIG--EPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGTCYRGDFEKRLKAVLKEVTKS---N--GQ 363 (982)
Q Consensus 291 ~~iLL~G--ppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~~~~g~~e~~l~~l~~~~~~~---~--~~ 363 (982)
-+-+..| |++.||||+|++||+.+...+ .+..++++|+++..+ .+.++.+++.+... . +.
T Consensus 565 ~~~~~~G~lPh~lGKTT~A~ala~~l~g~~-----~~~~~lElNASd~rg--------id~IR~iIk~~a~~~~~~~~~~ 631 (846)
T PRK04132 565 YHNFIGGNLPTVLHNTTAALALARELFGEN-----WRHNFLELNASDERG--------INVIREKVKEFARTKPIGGASF 631 (846)
T ss_pred hhhhhcCCCCCcccHHHHHHHHHHhhhccc-----ccCeEEEEeCCCccc--------HHHHHHHHHHHHhcCCcCCCCC
Confidence 3456668 999999999999999984432 256899999876431 12455555544321 1 23
Q ss_pred eEEEEccchhhhhCCCCCchhhHHHHHHhhhcC--CCeEEEEecCchhHhhhhhcChHHHhccceEEecCCCHHHHHHHH
Q 002012 364 IILFIDELHTIIGAGNQSGAMDASNMLKPMLGR--GELRCIGATTLNEYRNYIEKDPALERRFQQVFCDQPSVENTISIL 441 (982)
Q Consensus 364 ~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~--g~i~vI~at~~~~~~~~~~~d~al~rRf~~i~i~~Ps~~e~~~IL 441 (982)
.|+||||+|.|. .++++.|+..|+. +.+++|++||+.. .+.+++++||+.+.|.+|+.+++...|
T Consensus 632 KVvIIDEaD~Lt--------~~AQnALLk~lEep~~~~~FILi~N~~~-----kIi~tIrSRC~~i~F~~ls~~~i~~~L 698 (846)
T PRK04132 632 KIIFLDEADALT--------QDAQQALRRTMEMFSSNVRFILSCNYSS-----KIIEPIQSRCAIFRFRPLRDEDIAKRL 698 (846)
T ss_pred EEEEEECcccCC--------HHHHHHHHHHhhCCCCCeEEEEEeCChh-----hCchHHhhhceEEeCCCCCHHHHHHHH
Confidence 699999999996 5788999999994 8999999999887 788999999999999999999999999
Q ss_pred HHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCCcchhhHHHHHHHH
Q 002012 442 RGLRERYELHHGVKISDSALVSAAVLADRYITERFLPDKAIDLVDEAAA 490 (982)
Q Consensus 442 ~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~p~~a~~lld~a~~ 490 (982)
+.++++ .++.++++++..++..|++- +++++++++.+++
T Consensus 699 ~~I~~~----Egi~i~~e~L~~Ia~~s~GD------lR~AIn~Lq~~~~ 737 (846)
T PRK04132 699 RYIAEN----EGLELTEEGLQAILYIAEGD------MRRAINILQAAAA 737 (846)
T ss_pred HHHHHh----cCCCCCHHHHHHHHHHcCCC------HHHHHHHHHHHHH
Confidence 988876 57889999999999998854 3788888887654
No 307
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.24 E-value=4.8e-11 Score=145.15 Aligned_cols=165 Identities=26% Similarity=0.391 Sum_probs=113.3
Q ss_pred cccccchHHHHHHHHHHHHHhc-----CCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccc
Q 002012 663 KRVIGQDIAVKSVADAIRRSRA-----GLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHS 737 (982)
Q Consensus 663 ~~iiGq~~a~~~l~~~i~~~~~-----g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~ 737 (982)
.++.|.+.++..+.+.+..... ... ..-|. +++|+||||||||++|++++..+ +.+|+.++++++...
T Consensus 152 ~di~g~~~~~~~l~~i~~~~~~~~~~~~~~-~~~~~-gill~G~~G~GKt~~~~~~a~~~---~~~f~~is~~~~~~~-- 224 (644)
T PRK10733 152 ADVAGCDEAKEEVAELVEYLREPSRFQKLG-GKIPK-GVLMVGPPGTGKTLLAKAIAGEA---KVPFFTISGSDFVEM-- 224 (644)
T ss_pred HHHcCHHHHHHHHHHHHHHhhCHHHHHhcC-CCCCC-cEEEECCCCCCHHHHHHHHHHHc---CCCEEEEehHHhHHh--
Confidence 4566767666666665543211 000 01233 49999999999999999999987 788999998877432
Q ss_pred cccccCCCCCccccccCCchhHHHhhCCCeEEEEccccccCH--------------HHHHHHHHhhhcCceecCCCcEEe
Q 002012 738 VSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEIEKAHQ--------------DVFNILLQLLDDGRITDSQGRTVS 803 (982)
Q Consensus 738 ~~~l~g~~~g~vg~~~~~~l~~~l~~~~~~Vl~lDEidkl~~--------------~~~~~Ll~~le~g~~~d~~g~~~~ 803 (982)
+.|.. ......++...+...++||||||+|.+.. .+++.|+..|+. . ..
T Consensus 225 ---~~g~~-----~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg-~-~~------- 287 (644)
T PRK10733 225 ---FVGVG-----ASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDG-F-EG------- 287 (644)
T ss_pred ---hhccc-----HHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhc-c-cC-------
Confidence 12211 11112355566667789999999999832 255666666663 1 11
Q ss_pred cccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHH--hccccccccCCCChhHHHHHHHHHHH
Q 002012 804 FTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFL--NRIDEYIVFQPLDSKEISKIVEIQMN 881 (982)
Q Consensus 804 ~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll--~Rid~ii~F~pl~~~~l~~il~~~l~ 881 (982)
...+++|+|||.... ++|+++ +|||..|.|+.++.++..+|+..++.
T Consensus 288 ~~~vivIaaTN~p~~-------------------------------lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~ 336 (644)
T PRK10733 288 NEGIIVIAATNRPDV-------------------------------LDPALLRPGRFDRQVVVGLPDVRGREQILKVHMR 336 (644)
T ss_pred CCCeeEEEecCChhh-------------------------------cCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhh
Confidence 135899999997542 677777 59999999999999999999888776
Q ss_pred H
Q 002012 882 R 882 (982)
Q Consensus 882 ~ 882 (982)
+
T Consensus 337 ~ 337 (644)
T PRK10733 337 R 337 (644)
T ss_pred c
Confidence 5
No 308
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=99.23 E-value=2.7e-11 Score=133.52 Aligned_cols=162 Identities=13% Similarity=0.190 Sum_probs=111.6
Q ss_pred cccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEecccc-----ccccccc
Q 002012 665 VIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEY-----MEKHSVS 739 (982)
Q Consensus 665 iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~-----~~~~~~~ 739 (982)
..++....+.+..++...+. ...+||.||.|+||+.+|+.+|+.+.+.+..- --|+.. .....+.
T Consensus 5 yPWl~~~~~~l~~~~~~~rl--------~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~--~~Cg~C~sC~~~~~g~HP 74 (319)
T PRK06090 5 YPWLVPVWQNWKAGLDAGRI--------PGALLLQSDEGLGVESLVELFSRALLCQNYQS--EACGFCHSCELMQSGNHP 74 (319)
T ss_pred cccHHHHHHHHHHHHHcCCc--------ceeEeeECCCCCCHHHHHHHHHHHHcCCCCCC--CCCCCCHHHHHHHcCCCC
Confidence 46778888888888764322 22499999999999999999999997644211 112221 1112222
Q ss_pred cc--cCCC--CCccccccCCchhHHHhhC----CCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEE
Q 002012 740 RL--VGAP--PGYVGYEEGGQLTEVVRRR----PYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIM 811 (982)
Q Consensus 740 ~l--~g~~--~g~vg~~~~~~l~~~l~~~----~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~ 811 (982)
++ +... ...++.++.+.+.+.+... ++.|++||++|+|+....|+||+.||+ +..+++||+
T Consensus 75 D~~~i~p~~~~~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEE-----------Pp~~t~fiL 143 (319)
T PRK06090 75 DLHVIKPEKEGKSITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEE-----------PAPNCLFLL 143 (319)
T ss_pred CEEEEecCcCCCcCCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcC-----------CCCCeEEEE
Confidence 22 1111 0123333334444444433 468999999999999999999999998 235789999
Q ss_pred ecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHH
Q 002012 812 TSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQ 879 (982)
Q Consensus 812 tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~ 879 (982)
+|+.... +.|+++||| ..+.|+|++.+++.+.+...
T Consensus 144 ~t~~~~~-------------------------------lLpTI~SRC-q~~~~~~~~~~~~~~~L~~~ 179 (319)
T PRK06090 144 VTHNQKR-------------------------------LLPTIVSRC-QQWVVTPPSTAQAMQWLKGQ 179 (319)
T ss_pred EECChhh-------------------------------ChHHHHhcc-eeEeCCCCCHHHHHHHHHHc
Confidence 8886543 778999999 69999999999988777543
No 309
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=99.23 E-value=3e-11 Score=134.97 Aligned_cols=162 Identities=13% Similarity=0.134 Sum_probs=111.4
Q ss_pred cccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEecccc-----ccccccc
Q 002012 665 VIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEY-----MEKHSVS 739 (982)
Q Consensus 665 iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~-----~~~~~~~ 739 (982)
..++..+.+.+.+++...+. ...+||+||+|+||+++|.++|+.+++.+.. -.-.|+.. .....+.
T Consensus 4 yPWl~~~~~~l~~~~~~~rl--------~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~-~~~~Cg~C~sC~~~~~g~HP 74 (334)
T PRK07993 4 YPWLRPDYEQLVGSYQAGRG--------HHALLIQALPGMGDDALIYALSRWLMCQQPQ-GHKSCGHCRGCQLMQAGTHP 74 (334)
T ss_pred CCCChHHHHHHHHHHHcCCc--------ceEEeeECCCCCCHHHHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCCC
Confidence 45788888888888875432 2249999999999999999999999764211 00012221 1111222
Q ss_pred cccC-CCC---CccccccCCchhHHHhh----CCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEE
Q 002012 740 RLVG-APP---GYVGYEEGGQLTEVVRR----RPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIM 811 (982)
Q Consensus 740 ~l~g-~~~---g~vg~~~~~~l~~~l~~----~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~ 811 (982)
++.- .|. ..++.++.+.+.+.+.. +.+.|++||++|+|+....|+||+.||+ +..+++||+
T Consensus 75 D~~~i~p~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEE-----------Pp~~t~fiL 143 (334)
T PRK07993 75 DYYTLTPEKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEE-----------PPENTWFFL 143 (334)
T ss_pred CEEEEecccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcC-----------CCCCeEEEE
Confidence 2111 111 12444444555555553 3457999999999999999999999998 225789999
Q ss_pred ecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHH
Q 002012 812 TSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEI 878 (982)
Q Consensus 812 tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~ 878 (982)
+|+.... +.|+++||| ..+.|+|++.+++.+.+..
T Consensus 144 ~t~~~~~-------------------------------lLpTIrSRC-q~~~~~~~~~~~~~~~L~~ 178 (334)
T PRK07993 144 ACREPAR-------------------------------LLATLRSRC-RLHYLAPPPEQYALTWLSR 178 (334)
T ss_pred EECChhh-------------------------------ChHHHHhcc-ccccCCCCCHHHHHHHHHH
Confidence 9886543 788999999 6899999999988877754
No 310
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.23 E-value=4e-10 Score=121.01 Aligned_cols=198 Identities=21% Similarity=0.228 Sum_probs=134.1
Q ss_pred CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccc--------------cccccccccHHHHHHHH
Q 002012 288 RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASL--------------VAGTCYRGDFEKRLKAV 353 (982)
Q Consensus 288 ~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l--------------~~~~~~~g~~e~~l~~l 353 (982)
...+|++|+|++|.|||++++.+.+......-+ .-..++|+.+.+..- ..+.+........-..+
T Consensus 59 ~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~-~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~ 137 (302)
T PF05621_consen 59 HRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDE-DAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQV 137 (302)
T ss_pred cCCCceEEecCCCCcHHHHHHHHHHHCCCCCCC-CCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHH
Confidence 355789999999999999999999876433222 223467888875322 12222222333322333
Q ss_pred HHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCCCeEEEEecCchhHhhhhhcChHHHhccceEEecCCC
Q 002012 354 LKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRGELRCIGATTLNEYRNYIEKDPALERRFQQVFCDQPS 433 (982)
Q Consensus 354 ~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g~i~vI~at~~~~~~~~~~~d~al~rRf~~i~i~~Ps 433 (982)
+..++. -+.-+|+|||+|.+. +|......++.|.|+.+.+.-++.+|+.+|.+.+. .+.-|+.+.+||..+.++...
T Consensus 138 ~~llr~-~~vrmLIIDE~H~lL-aGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~-al~~D~QLa~RF~~~~Lp~W~ 214 (302)
T PF05621_consen 138 LRLLRR-LGVRMLIIDEFHNLL-AGSYRKQREFLNALKFLGNELQIPIVGVGTREAYR-ALRTDPQLASRFEPFELPRWE 214 (302)
T ss_pred HHHHHH-cCCcEEEeechHHHh-cccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHH-HhccCHHHHhccCCccCCCCC
Confidence 343443 334489999999976 23223356788999999889999999999999876 567899999999999998764
Q ss_pred -HHHHHHHHHHHHHHHhhhcCCccC-hHHHHHHHHHhhhhhccCCCcchhhHHHHHHHHHhhhh
Q 002012 434 -VENTISILRGLRERYELHHGVKIS-DSALVSAAVLADRYITERFLPDKAIDLVDEAAAKLKME 495 (982)
Q Consensus 434 -~~e~~~IL~~~~~~~~~~~~v~i~-~~~l~~~~~~s~r~i~~~~~p~~a~~lld~a~~~~~~~ 495 (982)
.++...+|..+...+.....-.+. ++....+...|++.| +....++..|+..+-.+
T Consensus 215 ~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~i------G~l~~ll~~aA~~AI~s 272 (302)
T PF05621_consen 215 LDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLI------GELSRLLNAAAIAAIRS 272 (302)
T ss_pred CCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCch------HHHHHHHHHHHHHHHhc
Confidence 445566666655555443333344 455678888988776 77888888877665433
No 311
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.22 E-value=2.9e-10 Score=126.77 Aligned_cols=213 Identities=21% Similarity=0.253 Sum_probs=135.6
Q ss_pred CCCcccchHHHHHHHHHhccCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCC----CCCC---------CCCCeEE-----
Q 002012 268 LDPVIGRDDEIRRCIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGD----VPET---------LQNRKLI----- 329 (982)
Q Consensus 268 l~~liG~~~~i~~l~~~L~~~~~~~iLL~GppGvGKT~la~~la~~l~~~~----~p~~---------l~~~~v~----- 329 (982)
|..++|+++.++.++-.+-.....+++|.|+||+||||++++++..+.... .|.. -.+|+..
T Consensus 3 f~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 82 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMMCEEVRIRVDSQE 82 (337)
T ss_pred ccccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccccChHHhhhhhccc
Confidence 677999999998887766666677999999999999999999998874211 0100 0000110
Q ss_pred -----E--Eeccccccc---ccccccH--HHHHH--------HHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHH
Q 002012 330 -----S--LDMASLVAG---TCYRGDF--EKRLK--------AVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNM 389 (982)
Q Consensus 330 -----~--l~~~~l~~~---~~~~g~~--e~~l~--------~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~ 389 (982)
. ....++..+ ....|.. +..+. .++. ..+ +.+|||||++.+. ...++.
T Consensus 83 ~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~---~A~-~GvL~lDEi~~L~--------~~~Q~~ 150 (337)
T TIGR02030 83 PLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLA---RAN-RGILYIDEVNLLE--------DHLVDV 150 (337)
T ss_pred ccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcce---ecc-CCEEEecChHhCC--------HHHHHH
Confidence 0 000011110 0112211 11110 1111 122 2489999999985 567788
Q ss_pred HHhhhcCCC---------------eEEEEecCchhHhhhhhcChHHHhccc-eEEecCCCH-HHHHHHHHHHHH------
Q 002012 390 LKPMLGRGE---------------LRCIGATTLNEYRNYIEKDPALERRFQ-QVFCDQPSV-ENTISILRGLRE------ 446 (982)
Q Consensus 390 L~~~le~g~---------------i~vI~at~~~~~~~~~~~d~al~rRf~-~i~i~~Ps~-~e~~~IL~~~~~------ 446 (982)
|+.+|+.+. +.+|+++|+.+. .+.++|.+||. .+.+..|+. +++.+|++....
T Consensus 151 Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg----~l~~~LldRf~l~i~l~~p~~~eer~eIL~~~~~~~~~~~ 226 (337)
T TIGR02030 151 LLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEG----ELRPQLLDRFGLHAEIRTVRDVELRVEIVERRTEYDADPH 226 (337)
T ss_pred HHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccC----CCCHHHHhhcceEEECCCCCCHHHHHHHHHhhhhcccCch
Confidence 888886553 567777776542 58999999997 788888864 778888865211
Q ss_pred ----HHh---------------hhcCCccChHHHHHHHHHhhhhhccCCCcchhhHHHHHHHHHhhhhccC
Q 002012 447 ----RYE---------------LHHGVKISDSALVSAAVLADRYITERFLPDKAIDLVDEAAAKLKMEITS 498 (982)
Q Consensus 447 ----~~~---------------~~~~v~i~~~~l~~~~~~s~r~i~~~~~p~~a~~lld~a~~~~~~~~~~ 498 (982)
.+. .-..+.++++++.++++++...- ...|+..+.++.-|.+.+.++...
T Consensus 227 ~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~--~~s~Ra~i~l~raArA~Aal~GR~ 295 (337)
T TIGR02030 227 AFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELD--VDGLRGELTLNRAAKALAAFEGRT 295 (337)
T ss_pred hhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHC--CCCCcHHHHHHHHHHHHHHHcCCC
Confidence 010 02457789999999998876532 225788888888888888877653
No 312
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.22 E-value=4.7e-11 Score=133.27 Aligned_cols=183 Identities=21% Similarity=0.348 Sum_probs=129.3
Q ss_pred CCCCcccchHHHHHHHHHhcc--CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccccc----
Q 002012 267 KLDPVIGRDDEIRRCIQILSR--RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGT---- 340 (982)
Q Consensus 267 ~l~~liG~~~~i~~l~~~L~~--~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~---- 340 (982)
.+..+||++..++.+++.+.. .+..+|||.|++||||..+|++|.+.-.+. +.+++.+||+++...-
T Consensus 221 ~~~~iIG~S~am~~ll~~i~~VA~Sd~tVLi~GETGtGKElvAraIH~~S~R~-------~kPfV~~NCAAlPesLlESE 293 (550)
T COG3604 221 EVGGIIGRSPAMRQLLKEIEVVAKSDSTVLIRGETGTGKELVARAIHQLSPRR-------DKPFVKLNCAALPESLLESE 293 (550)
T ss_pred ccccceecCHHHHHHHHHHHHHhcCCCeEEEecCCCccHHHHHHHHHhhCccc-------CCCceeeeccccchHHHHHH
Confidence 566899999999988886543 567789999999999999999999876543 7899999998886421
Q ss_pred ---cccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCC-------------CeEEEEe
Q 002012 341 ---CYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRG-------------ELRCIGA 404 (982)
Q Consensus 341 ---~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g-------------~i~vI~a 404 (982)
-..|.|...+..-......++++ -||+|||..|. ..++.-|+.++..| +|++|+|
T Consensus 294 LFGHeKGAFTGA~~~r~GrFElAdGG-TLFLDEIGelP--------L~lQaKLLRvLQegEieRvG~~r~ikVDVRiIAA 364 (550)
T COG3604 294 LFGHEKGAFTGAINTRRGRFELADGG-TLFLDEIGELP--------LALQAKLLRVLQEGEIERVGGDRTIKVDVRVIAA 364 (550)
T ss_pred HhcccccccccchhccCcceeecCCC-eEechhhccCC--------HHHHHHHHHHHhhcceeecCCCceeEEEEEEEec
Confidence 01222332222111111222444 69999999986 67788899998765 4699999
Q ss_pred cCchhHhhhhhcChHHHh----ccceEEecCCC----HHHHHHHHHHHHHHHhhhcC---CccChHHHHHHHHH
Q 002012 405 TTLNEYRNYIEKDPALER----RFQQVFCDQPS----VENTISILRGLRERYELHHG---VKISDSALVSAAVL 467 (982)
Q Consensus 405 t~~~~~~~~~~~d~al~r----Rf~~i~i~~Ps----~~e~~~IL~~~~~~~~~~~~---v~i~~~~l~~~~~~ 467 (982)
||.+-- +. ..+..|+. |+..+.+..|. .+|+.-+...+++++..+.| +.++.++++.+..+
T Consensus 365 TNRDL~-~~-V~~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~~y 436 (550)
T COG3604 365 TNRDLE-EM-VRDGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLSSY 436 (550)
T ss_pred cchhHH-HH-HHcCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHcC
Confidence 998742 11 23444444 88777777765 55666666778888777555 57899999988777
No 313
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=99.22 E-value=2.3e-10 Score=138.63 Aligned_cols=192 Identities=14% Similarity=0.165 Sum_probs=122.3
Q ss_pred HHHHHHHHhhhcccccchHHHHHHHHHHHHHhcCCC---------------CCCCCCceEEeecCCCCchHHHHHHHHHH
Q 002012 652 EKLVMLEEVLHKRVIGQDIAVKSVADAIRRSRAGLS---------------DPARPIASFMFMGPTGVGKTELGKALADF 716 (982)
Q Consensus 652 ~~l~~l~~~l~~~iiGq~~a~~~l~~~i~~~~~g~~---------------~~~~p~~~lLf~Gp~GtGKT~lA~~la~~ 716 (982)
..+..+.+.+...|+|++.+++.|.-++- .|.. ..-+...|+||+|+|||||+.+|+.+++.
T Consensus 439 ~i~~~L~~SiaP~I~G~e~vK~ailL~L~---gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~l 515 (915)
T PTZ00111 439 MIYRILLDSFAPSIKARNNVKIGLLCQLF---SGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLL 515 (915)
T ss_pred HHHHHHHHHhCCeEECCHHHHHHHHHHHh---cCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHh
Confidence 34566778888999999999988865552 1211 01233458999999999999999999987
Q ss_pred hc----CCCCceEEEeccccccccccccccCCCCCccccccCCchhHHHhhCCCeEEEEccccccCHHHHHHHHHhhhcC
Q 002012 717 LF----NTENALVRIDMSEYMEKHSVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEIEKAHQDVFNILLQLLDDG 792 (982)
Q Consensus 717 l~----~~~~~~v~i~~s~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~~~~~Vl~lDEidkl~~~~~~~Ll~~le~g 792 (982)
.. .++.++..+++...... .+...|... .-.+++..+.+++++|||+++|++..|..|+++||++
T Consensus 516 spR~~ytsG~~~s~vgLTa~~~~------~d~~tG~~~-----le~GaLvlAdgGtL~IDEidkms~~~Q~aLlEaMEqq 584 (915)
T PTZ00111 516 SPRSIYTSGKSSSSVGLTASIKF------NESDNGRAM-----IQPGAVVLANGGVCCIDELDKCHNESRLSLYEVMEQQ 584 (915)
T ss_pred CCccccCCCCCCccccccchhhh------cccccCccc-----ccCCcEEEcCCCeEEecchhhCCHHHHHHHHHHHhCC
Confidence 52 33355665555543210 000001000 0123455677889999999999999999999999999
Q ss_pred ceecCC-CcEEec-ccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhcccccc-ccCCCCh
Q 002012 793 RITDSQ-GRTVSF-TNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYI-VFQPLDS 869 (982)
Q Consensus 793 ~~~d~~-g~~~~~-~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii-~F~pl~~ 869 (982)
.++... |....+ .++.||+++|+........ ..+.+. -.|++.+++|||.++ ...+++.
T Consensus 585 tIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~------------~s~~en------i~Lp~~LLSRFDLIf~l~D~~d~ 646 (915)
T PTZ00111 585 TVTIAKAGIVATLKAETAILASCNPINSRYNKN------------KAVIEN------INISPSLFTRFDLIYLVLDHIDQ 646 (915)
T ss_pred EEEEecCCcceecCCCeEEEEEcCCcccccCcc------------cCcccc------cCCChHHhhhhcEEEEecCCCCh
Confidence 876443 443333 7899999999753211100 000001 128899999999754 4455554
Q ss_pred hHHHHH
Q 002012 870 KEISKI 875 (982)
Q Consensus 870 ~~l~~i 875 (982)
+.=..|
T Consensus 647 ~~D~~l 652 (915)
T PTZ00111 647 DTDQLI 652 (915)
T ss_pred HHHHHH
Confidence 433333
No 314
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.22 E-value=2.1e-10 Score=136.14 Aligned_cols=223 Identities=14% Similarity=0.135 Sum_probs=135.1
Q ss_pred HHHHHHHhhhcccccchHHHHHHHHHHHHHhcCCC------CCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEE
Q 002012 653 KLVMLEEVLHKRVIGQDIAVKSVADAIRRSRAGLS------DPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVR 726 (982)
Q Consensus 653 ~l~~l~~~l~~~iiGq~~a~~~l~~~i~~~~~g~~------~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~ 726 (982)
.+..+.+.+...|+|++.++..+.-++-. |.. ..-+...|+||+|+||||||.+|+.+++.+.. ..++.
T Consensus 193 ~~~~l~~si~p~i~G~~~~k~~l~l~l~g---g~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r--~~~~~ 267 (509)
T smart00350 193 IYERLSRSLAPSIYGHEDIKKAILLLLFG---GVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPR--AVYTT 267 (509)
T ss_pred HHHHHHHhhCccccCcHHHHHHHHHHHhC---CCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCc--ceEcC
Confidence 45567788889999999987777555531 110 01122347999999999999999999998622 12222
Q ss_pred E---eccccccccccccccCCCCCccccccCCchhHHHhhCCCeEEEEccccccCHHHHHHHHHhhhcCceecCC-CcEE
Q 002012 727 I---DMSEYMEKHSVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQ-GRTV 802 (982)
Q Consensus 727 i---~~s~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~-g~~~ 802 (982)
. ++..+.. ..+..+ ..|.. ..-.+.+..+.+++++|||++++++..+..|+++||++.++... |...
T Consensus 268 ~~~~~~~~l~~-----~~~~~~--~~g~~--~~~~G~l~~A~~Gil~iDEi~~l~~~~q~~L~e~me~~~i~i~k~G~~~ 338 (509)
T smart00350 268 GKGSSAVGLTA-----AVTRDP--ETREF--TLEGGALVLADNGVCCIDEFDKMDDSDRTAIHEAMEQQTISIAKAGITT 338 (509)
T ss_pred CCCCCcCCccc-----cceEcc--CcceE--EecCccEEecCCCEEEEechhhCCHHHHHHHHHHHhcCEEEEEeCCEEE
Confidence 1 1111100 000000 00100 00122345667889999999999999999999999999876433 4444
Q ss_pred ec-ccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccc-cCCCChhHHHHHHHHHH
Q 002012 803 SF-TNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIV-FQPLDSKEISKIVEIQM 880 (982)
Q Consensus 803 ~~-~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~-F~pl~~~~l~~il~~~l 880 (982)
.+ .++.+|+|+|+-....... ..+.+. -.+++.+++|||.++. ..+++.+.-.+|++..+
T Consensus 339 ~l~~~~~viAa~NP~~g~y~~~------------~~~~~n------~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~ 400 (509)
T smart00350 339 TLNARCSVLAAANPIGGRYDPK------------LTPEEN------IDLPAPILSRFDLLFVVLDEVDEERDRELAKHVV 400 (509)
T ss_pred EecCCcEEEEEeCCCCcccCCC------------cChhhc------cCCChHHhCceeeEEEecCCCChHHHHHHHHHHH
Confidence 33 6899999999743211000 000000 1389999999998544 46677776667776644
Q ss_pred HHHH--------------------HH--HHhCCCCccCCHHHHHHHHhc
Q 002012 881 NRVK--------------------DR--LKQKKIDLHYTKEAVTLLGIL 907 (982)
Q Consensus 881 ~~~~--------------------~~--~~~~~~~l~i~~~a~~~L~~~ 907 (982)
.... +. +.+..+...+++++.++|..+
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~l~~yi~~ar~~~~P~ls~~~~~~i~~~ 449 (509)
T smart00350 401 DLHRYSHPEPDEADEVPISQEFLRKYIAYAREKIKPKLSEEAAEKLVKA 449 (509)
T ss_pred HhhcccCccccccccccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Confidence 3211 10 111224567899999888763
No 315
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.22 E-value=1.8e-10 Score=119.25 Aligned_cols=173 Identities=19% Similarity=0.344 Sum_probs=129.1
Q ss_pred CceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEecccccccccc-------cc--ccCCCCCccccccCCchhHHHh-
Q 002012 693 IASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSV-------SR--LVGAPPGYVGYEEGGQLTEVVR- 762 (982)
Q Consensus 693 ~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~-------~~--l~g~~~g~vg~~~~~~l~~~l~- 762 (982)
.+|++|+||+|+||.+.+.++-+.+||.+..-..++...+..+..- +. .+--.|+..|+.+.-.+.+.++
T Consensus 34 ~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKe 113 (351)
T KOG2035|consen 34 FPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKE 113 (351)
T ss_pred CCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHH
Confidence 3479999999999999999999999998887778877776543211 10 1112233444433222233332
Q ss_pred -----------hCCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCChHHHHHhhhhcccch
Q 002012 763 -----------RRPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSK 831 (982)
Q Consensus 763 -----------~~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~i~~~~~~~~~~~ 831 (982)
+.++.|++|.|+|++..++|.+|...||... +++.+|+.+|.-+.
T Consensus 114 vAQt~qie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs-----------~~~RlIl~cns~Sr------------- 169 (351)
T KOG2035|consen 114 VAQTQQIETQGQRPFKVVVINEADELTRDAQHALRRTMEKYS-----------SNCRLILVCNSTSR------------- 169 (351)
T ss_pred HHhhcchhhccccceEEEEEechHhhhHHHHHHHHHHHHHHh-----------cCceEEEEecCccc-------------
Confidence 2456899999999999999999999999632 67999999997654
Q ss_pred HHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHHHHHHHHHhCCCCccCCHHHHHHHHhcCCCC
Q 002012 832 EAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDP 911 (982)
Q Consensus 832 ~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~~~~~~~~~~~l~i~~~a~~~L~~~~~~~ 911 (982)
+-+++.+|| ..|..+.++.+|+-.++...+++ .+ +.+..+.+..+++.+-
T Consensus 170 ------------------iIepIrSRC-l~iRvpaps~eeI~~vl~~v~~k-------E~--l~lp~~~l~rIa~kS~-- 219 (351)
T KOG2035|consen 170 ------------------IIEPIRSRC-LFIRVPAPSDEEITSVLSKVLKK-------EG--LQLPKELLKRIAEKSN-- 219 (351)
T ss_pred ------------------chhHHhhhe-eEEeCCCCCHHHHHHHHHHHHHH-------hc--ccCcHHHHHHHHHHhc--
Confidence 567889999 78999999999999999988876 44 6777888888888631
Q ss_pred CCCchHHHHHHH
Q 002012 912 NFGARPVKRVIQ 923 (982)
Q Consensus 912 ~~gaR~L~~~i~ 923 (982)
|.|++.+-
T Consensus 220 ----~nLRrAll 227 (351)
T KOG2035|consen 220 ----RNLRRALL 227 (351)
T ss_pred ----ccHHHHHH
Confidence 45666654
No 316
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.22 E-value=5e-11 Score=133.33 Aligned_cols=204 Identities=22% Similarity=0.284 Sum_probs=135.7
Q ss_pred cCCCCCcccchHHHHHHHHHhcc--CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEeccccccccc-
Q 002012 265 SGKLDPVIGRDDEIRRCIQILSR--RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGTC- 341 (982)
Q Consensus 265 ~~~l~~liG~~~~i~~l~~~L~~--~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~~- 341 (982)
...++++||.+..++++++.+.+ ....++|++|++||||+.+|+.|+..-.+ . .+.+++.+||+.+.....
T Consensus 74 ~~~~~~LIG~~~~~~~~~eqik~~ap~~~~vLi~GetGtGKel~A~~iH~~s~r-~-----~~~PFI~~NCa~~~en~~~ 147 (403)
T COG1221 74 SEALDDLIGESPSLQELREQIKAYAPSGLPVLIIGETGTGKELFARLIHALSAR-R-----AEAPFIAFNCAAYSENLQE 147 (403)
T ss_pred chhhhhhhccCHHHHHHHHHHHhhCCCCCcEEEecCCCccHHHHHHHHHHhhhc-c-----cCCCEEEEEHHHhCcCHHH
Confidence 34577899999999888887755 46678999999999999999999943322 1 378999999988764311
Q ss_pred ----------ccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCC-------------C
Q 002012 342 ----------YRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRG-------------E 398 (982)
Q Consensus 342 ----------~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g-------------~ 398 (982)
+.|... .-..+|+.+ +++ +||+|||+.|. ...+..|+.+++.| +
T Consensus 148 ~eLFG~~kGaftGa~~-~k~Glfe~A---~GG-tLfLDEI~~LP--------~~~Q~kLl~~le~g~~~rvG~~~~~~~d 214 (403)
T COG1221 148 AELFGHEKGAFTGAQG-GKAGLFEQA---NGG-TLFLDEIHRLP--------PEGQEKLLRVLEEGEYRRVGGSQPRPVD 214 (403)
T ss_pred HHHhccccceeecccC-CcCchheec---CCC-EEehhhhhhCC--------HhHHHHHHHHHHcCceEecCCCCCcCCC
Confidence 122111 111233322 443 89999999997 56677899999865 5
Q ss_pred eEEEEecCchhHhhhhhcChHHHhccceEEecCCC----HHHHHHHHHHHHHHHhhhcCCccC---hHHHHHHHHHhhhh
Q 002012 399 LRCIGATTLNEYRNYIEKDPALERRFQQVFCDQPS----VENTISILRGLRERYELHHGVKIS---DSALVSAAVLADRY 471 (982)
Q Consensus 399 i~vI~at~~~~~~~~~~~d~al~rRf~~i~i~~Ps----~~e~~~IL~~~~~~~~~~~~v~i~---~~~l~~~~~~s~r~ 471 (982)
+++|+|||.+.-...+.- ..|.+|+..+.|..|+ .+|+..++..+...+....+..++ ++++..+..+..
T Consensus 215 VRli~AT~~~l~~~~~~g-~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~~y~~-- 291 (403)
T COG1221 215 VRLICATTEDLEEAVLAG-ADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALLAYDW-- 291 (403)
T ss_pred ceeeeccccCHHHHHHhh-cchhhhhcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCC--
Confidence 689999998764433322 4677766667777776 455666677777777766664443 356666666521
Q ss_pred hccCCCcchhhHHHHHHHHHhh
Q 002012 472 ITERFLPDKAIDLVDEAAAKLK 493 (982)
Q Consensus 472 i~~~~~p~~a~~lld~a~~~~~ 493 (982)
...-+...++++.+|+...
T Consensus 292 ---pGNirELkN~Ve~~~~~~~ 310 (403)
T COG1221 292 ---PGNIRELKNLVERAVAQAS 310 (403)
T ss_pred ---CCcHHHHHHHHHHHHHHhc
Confidence 1112445556677776654
No 317
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.22 E-value=2.5e-10 Score=130.92 Aligned_cols=219 Identities=22% Similarity=0.267 Sum_probs=129.9
Q ss_pred cccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCC--C----CceEEEecccccccc
Q 002012 663 KRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNT--E----NALVRIDMSEYMEKH 736 (982)
Q Consensus 663 ~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~--~----~~~v~i~~s~~~~~~ 736 (982)
+.++|++..++.|...+.....+ ..+ .+++++||||||||++++.+.+.+... + ..++.+||..+....
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~----~~~-~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~ 89 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRG----SRP-SNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLY 89 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcC----CCC-CcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHH
Confidence 57899999999999999865443 222 259999999999999999999877321 1 367889998764432
Q ss_pred cc-----cccc--CCCCCccccccC---CchhHHHhh-CCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecc
Q 002012 737 SV-----SRLV--GAPPGYVGYEEG---GQLTEVVRR-RPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFT 805 (982)
Q Consensus 737 ~~-----~~l~--g~~~g~vg~~~~---~~l~~~l~~-~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~ 805 (982)
.+ ..+. |......+.... ..+.+.+.. ....||+|||+|.+.......|..+++-..... ....
T Consensus 90 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~-----~~~~ 164 (365)
T TIGR02928 90 QVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGD-----LDNA 164 (365)
T ss_pred HHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccC-----CCCC
Confidence 21 1122 222111121111 123333433 345689999999995332333444433211000 1124
Q ss_pred cEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccc-cccccCCCChhHHHHHHHHHHHHHH
Q 002012 806 NCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRID-EYIVFQPLDSKEISKIVEIQMNRVK 884 (982)
Q Consensus 806 ~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid-~ii~F~pl~~~~l~~il~~~l~~~~ 884 (982)
++.+|+++|.... . ..+.+.+.+|+. ..|.|+|++.+++.+|+...+....
T Consensus 165 ~v~lI~i~n~~~~--~--------------------------~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~ 216 (365)
T TIGR02928 165 KVGVIGISNDLKF--R--------------------------ENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAF 216 (365)
T ss_pred eEEEEEEECCcch--H--------------------------hhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhc
Confidence 6888888885421 0 114556667774 4789999999999999998875310
Q ss_pred HHHHhCCCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHHHH
Q 002012 885 DRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLV 926 (982)
Q Consensus 885 ~~~~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~l 926 (982)
..-.+++++++++..........+|...++++..+
T Consensus 217 -------~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~ 251 (365)
T TIGR02928 217 -------YDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAG 251 (365)
T ss_pred -------cCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 11348888888776642211112455545555433
No 318
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=99.21 E-value=1.7e-11 Score=120.06 Aligned_cols=137 Identities=20% Similarity=0.370 Sum_probs=99.0
Q ss_pred ccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccccccccCCC
Q 002012 666 IGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRLVGAP 745 (982)
Q Consensus 666 iGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l~g~~ 745 (982)
+|...+++.+.+.+...... ..+++|+|++||||+.+|+.|+........+|+.++|....
T Consensus 1 vG~S~~~~~l~~~l~~~a~~-------~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~------------ 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKS-------SSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP------------ 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCS-------SS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC------------
T ss_pred CCCCHHHHHHHHHHHHHhCC-------CCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc------------
Confidence 58889999999999876422 12399999999999999999999875555677777776532
Q ss_pred CCccccccCCchhHHHhhCCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCChHHHHHhhh
Q 002012 746 PGYVGYEEGGQLTEVVRRRPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQ 825 (982)
Q Consensus 746 ~g~vg~~~~~~l~~~l~~~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~i~~~~~ 825 (982)
.+.+..+.+++|+|+|+|.++++.|..|+..|+... -.++.+|+||+.+...+.+.
T Consensus 62 ------------~~~l~~a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~----------~~~~RlI~ss~~~l~~l~~~-- 117 (138)
T PF14532_consen 62 ------------AELLEQAKGGTLYLKNIDRLSPEAQRRLLDLLKRQE----------RSNVRLIASSSQDLEELVEE-- 117 (138)
T ss_dssp ------------HHHHHHCTTSEEEEECGCCS-HHHHHHHHHHHHHCT----------TTTSEEEEEECC-CCCHHHH--
T ss_pred ------------HHHHHHcCCCEEEECChHHCCHHHHHHHHHHHHhcC----------CCCeEEEEEeCCCHHHHhhc--
Confidence 335555678899999999999999999999998632 13578999998776544332
Q ss_pred hcccchHHHHHHHHHHHHHHHHhhcChHHHhcccc-ccccCCC
Q 002012 826 SVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDE-YIVFQPL 867 (982)
Q Consensus 826 ~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~-ii~F~pl 867 (982)
+.|.++|+.|++. .|..|||
T Consensus 118 ----------------------~~~~~~L~~~l~~~~i~lPpL 138 (138)
T PF14532_consen 118 ----------------------GRFSPDLYYRLSQLEIHLPPL 138 (138)
T ss_dssp ----------------------STHHHHHHHHCSTCEEEE---
T ss_pred ----------------------cchhHHHHHHhCCCEEeCCCC
Confidence 4588899999975 5666664
No 319
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.21 E-value=1.5e-10 Score=119.75 Aligned_cols=155 Identities=23% Similarity=0.321 Sum_probs=100.6
Q ss_pred ceEEeecCCCCchHHHHHHHHHHhcCCC----CceEE-Eeccccccccccc--cccCCCCCccccccCCchhHHHhh---
Q 002012 694 ASFMFMGPTGVGKTELGKALADFLFNTE----NALVR-IDMSEYMEKHSVS--RLVGAPPGYVGYEEGGQLTEVVRR--- 763 (982)
Q Consensus 694 ~~lLf~Gp~GtGKT~lA~~la~~l~~~~----~~~v~-i~~s~~~~~~~~~--~l~g~~~g~vg~~~~~~l~~~l~~--- 763 (982)
..+||+||+|+|||++|+.+++.+.+.. .++.. .+|..+.. .... ..+....+..+.+..+.+.+.+..
T Consensus 15 ~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~-~~~~d~~~~~~~~~~~~~~~i~~i~~~~~~~~~ 93 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEA-GNHPDLHRLEPEGQSIKVDQVRELVEFLSRTPQ 93 (188)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc-CCCCcEEEeccccCcCCHHHHHHHHHHHccCcc
Confidence 3599999999999999999999986531 11100 01111100 0000 001111111222222233444443
Q ss_pred -CCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHH
Q 002012 764 -RPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQV 842 (982)
Q Consensus 764 -~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 842 (982)
.++.|+||||+|.++++.++.|+..||+.. .+++||++++...
T Consensus 94 ~~~~kviiide~~~l~~~~~~~Ll~~le~~~-----------~~~~~il~~~~~~------------------------- 137 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNEAAANALLKTLEEPP-----------PNTLFILITPSPE------------------------- 137 (188)
T ss_pred cCCeEEEEEechhhhCHHHHHHHHHHhcCCC-----------CCeEEEEEECChH-------------------------
Confidence 345799999999999999999999998621 3578888876321
Q ss_pred HHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHHHHHHHHHhCCCCccCCHHHHHHHHhc
Q 002012 843 VELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGIL 907 (982)
Q Consensus 843 ~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~~~~~~~~~~~l~i~~~a~~~L~~~ 907 (982)
.+.+++.+|+ .++.|.|++.+++.+++... + ++++++++|+..
T Consensus 138 ------~l~~~i~sr~-~~~~~~~~~~~~~~~~l~~~-----------g----i~~~~~~~i~~~ 180 (188)
T TIGR00678 138 ------KLLPTIRSRC-QVLPFPPLSEEALLQWLIRQ-----------G----ISEEAAELLLAL 180 (188)
T ss_pred ------hChHHHHhhc-EEeeCCCCCHHHHHHHHHHc-----------C----CCHHHHHHHHHH
Confidence 1567888999 59999999999988777654 3 678888888875
No 320
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=2.4e-10 Score=120.44 Aligned_cols=169 Identities=22% Similarity=0.311 Sum_probs=117.6
Q ss_pred CCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEeccccccccccccc-HHHHHHHHHHHHH---hcCCCe
Q 002012 289 TKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGTCYRGD-FEKRLKAVLKEVT---KSNGQI 364 (982)
Q Consensus 289 ~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~~~~g~-~e~~l~~l~~~~~---~~~~~~ 364 (982)
.+.|+||+||+|+|||.||+.||+.+ +.++--.|+..|+. +.|.|+ +|..+..++..+. ......
T Consensus 96 ~KSNILLiGPTGsGKTlLAqTLAk~L----------nVPFaiADATtLTE-AGYVGEDVENillkLlqaadydV~rAerG 164 (408)
T COG1219 96 SKSNILLIGPTGSGKTLLAQTLAKIL----------NVPFAIADATTLTE-AGYVGEDVENILLKLLQAADYDVERAERG 164 (408)
T ss_pred eeccEEEECCCCCcHHHHHHHHHHHh----------CCCeeeccccchhh-ccccchhHHHHHHHHHHHcccCHHHHhCC
Confidence 57899999999999999999999999 88888888888874 358886 4444555655432 112234
Q ss_pred EEEEccchhhhhCCCC-Cc-----hhhHHHHHHhhhcC-----------------------CCeEEEEecCchhHhh---
Q 002012 365 ILFIDELHTIIGAGNQ-SG-----AMDASNMLKPMLGR-----------------------GELRCIGATTLNEYRN--- 412 (982)
Q Consensus 365 IL~IDEi~~l~~~~~~-~~-----~~~~~~~L~~~le~-----------------------g~i~vI~at~~~~~~~--- 412 (982)
|+||||||.+.....+ +. ..-++..|+.+++. .+|.||+.+......+
T Consensus 165 IIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGTvasVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~ 244 (408)
T COG1219 165 IIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEFIQVDTSNILFICGGAFAGLEKIIK 244 (408)
T ss_pred eEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCceeccCCCCCCCCCccceEEEcccceeEEeccccccHHHHHH
Confidence 9999999999865432 11 13466778887751 2456665442221111
Q ss_pred ------------------------------------hhhcChHHHhccc-eEEecCCCHHHHHHHH----HHHHHHHhh-
Q 002012 413 ------------------------------------YIEKDPALERRFQ-QVFCDQPSVENTISIL----RGLRERYEL- 450 (982)
Q Consensus 413 ------------------------------------~~~~d~al~rRf~-~i~i~~Ps~~e~~~IL----~~~~~~~~~- 450 (982)
.|.+-|.|.-|+. ...+...+.+++..|| ..+.++|..
T Consensus 245 ~R~~~~~iGF~a~~~~~~~~~~~~~~l~~vepeDLvkFGLIPEfIGRlPvia~L~~Lde~aLv~ILtePkNAlvKQYq~L 324 (408)
T COG1219 245 KRLGKKGIGFGAEVKSKSKKKEEGELLKQVEPEDLVKFGLIPEFIGRLPVIATLEELDEDALVQILTEPKNALVKQYQKL 324 (408)
T ss_pred HhccCCcccccccccchhhhhhHHHHHHhcChHHHHHcCCcHHHhcccceeeehhhcCHHHHHHHHhcccHHHHHHHHHH
Confidence 1224588888997 5577778999999999 567788775
Q ss_pred ----hcCCccChHHHHHHHHHh
Q 002012 451 ----HHGVKISDSALVSAAVLA 468 (982)
Q Consensus 451 ----~~~v~i~~~~l~~~~~~s 468 (982)
...+.++++++..++..+
T Consensus 325 f~~d~V~L~F~~~AL~~IA~~A 346 (408)
T COG1219 325 FEMDGVELEFTEEALKAIAKKA 346 (408)
T ss_pred hcccCceEEEcHHHHHHHHHHH
Confidence 233567899998887764
No 321
>PRK09087 hypothetical protein; Validated
Probab=99.21 E-value=3.8e-10 Score=119.64 Aligned_cols=166 Identities=11% Similarity=0.077 Sum_probs=112.2
Q ss_pred CCCCccc-c-hHHHHHHHHHhccCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccccccccc
Q 002012 267 KLDPVIG-R-DDEIRRCIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGTCYRG 344 (982)
Q Consensus 267 ~l~~liG-~-~~~i~~l~~~L~~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~~~~g 344 (982)
+|++.|. . ......++..+.....+.++|+||+|+|||+|+++++... +.. +++...+.
T Consensus 19 ~~~~Fi~~~~N~~a~~~l~~~~~~~~~~l~l~G~~GsGKThLl~~~~~~~----------~~~--~i~~~~~~------- 79 (226)
T PRK09087 19 GRDDLLVTESNRAAVSLVDHWPNWPSPVVVLAGPVGSGKTHLASIWREKS----------DAL--LIHPNEIG------- 79 (226)
T ss_pred ChhceeecCchHHHHHHHHhcccCCCCeEEEECCCCCCHHHHHHHHHHhc----------CCE--EecHHHcc-------
Confidence 4666553 3 3333333333222222337899999999999999988754 333 33322111
Q ss_pred cHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCCCeEEEEecCchhHhhhhhcChHHHhcc
Q 002012 345 DFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRGELRCIGATTLNEYRNYIEKDPALERRF 424 (982)
Q Consensus 345 ~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g~i~vI~at~~~~~~~~~~~d~al~rRf 424 (982)
.+.+..+.. .+|+|||++.+. .....+.+++....+.|...+|++++.+.+- -...|.+++||
T Consensus 80 ------~~~~~~~~~----~~l~iDDi~~~~-----~~~~~lf~l~n~~~~~g~~ilits~~~p~~~--~~~~~dL~SRl 142 (226)
T PRK09087 80 ------SDAANAAAE----GPVLIEDIDAGG-----FDETGLFHLINSVRQAGTSLLMTSRLWPSSW--NVKLPDLKSRL 142 (226)
T ss_pred ------hHHHHhhhc----CeEEEECCCCCC-----CCHHHHHHHHHHHHhCCCeEEEECCCChHHh--ccccccHHHHH
Confidence 112222221 279999999763 1234567777777788888888888777632 22478999999
Q ss_pred ---ceEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhh
Q 002012 425 ---QQVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYI 472 (982)
Q Consensus 425 ---~~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i 472 (982)
..+.+..|+.+++..||+...+. .++.++++++.+++..+.|-+
T Consensus 143 ~~gl~~~l~~pd~e~~~~iL~~~~~~----~~~~l~~ev~~~La~~~~r~~ 189 (226)
T PRK09087 143 KAATVVEIGEPDDALLSQVIFKLFAD----RQLYVDPHVVYYLVSRMERSL 189 (226)
T ss_pred hCCceeecCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHhhhhH
Confidence 69999999999999999888776 588999999999999877543
No 322
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.21 E-value=3.7e-11 Score=133.93 Aligned_cols=141 Identities=19% Similarity=0.250 Sum_probs=96.7
Q ss_pred eEEeecCCCCchHHHHHHHHHHhcCCCCceEEEecccc-----ccccccccccC-CCC---CccccccCCchhHHHhh--
Q 002012 695 SFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEY-----MEKHSVSRLVG-APP---GYVGYEEGGQLTEVVRR-- 763 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~-----~~~~~~~~l~g-~~~---g~vg~~~~~~l~~~l~~-- 763 (982)
.+||+||+|+||+++|+.+|+.+++.+.. -.--|+.+ .....+.++.- .+. ..++.++.+.+.+.+..
T Consensus 24 a~Lf~G~~G~GK~~~A~~~A~~llC~~~~-~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~~~~ 102 (328)
T PRK05707 24 AYLLHGPAGIGKRALAERLAAALLCEAPQ-GGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVVQTA 102 (328)
T ss_pred eeeeECCCCCCHHHHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHhhcc
Confidence 49999999999999999999999763211 00012211 11111222111 111 12333444445555554
Q ss_pred --CCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHH
Q 002012 764 --RPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQ 841 (982)
Q Consensus 764 --~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~ 841 (982)
.++.|++||++|+|+...+|+||+.||+- ..+++||++|+....
T Consensus 103 ~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEP-----------p~~~~fiL~t~~~~~----------------------- 148 (328)
T PRK05707 103 QLGGRKVVLIEPAEAMNRNAANALLKSLEEP-----------SGDTVLLLISHQPSR----------------------- 148 (328)
T ss_pred ccCCCeEEEECChhhCCHHHHHHHHHHHhCC-----------CCCeEEEEEECChhh-----------------------
Confidence 34679999999999999999999999972 246899999886543
Q ss_pred HHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHH
Q 002012 842 VVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQ 879 (982)
Q Consensus 842 ~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~ 879 (982)
+.|++++|| ..+.|.|++.+++.+.+...
T Consensus 149 --------ll~TI~SRc-~~~~~~~~~~~~~~~~L~~~ 177 (328)
T PRK05707 149 --------LLPTIKSRC-QQQACPLPSNEESLQWLQQA 177 (328)
T ss_pred --------CcHHHHhhc-eeeeCCCcCHHHHHHHHHHh
Confidence 788999999 68999999999988777654
No 323
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.21 E-value=2.2e-10 Score=128.26 Aligned_cols=179 Identities=22% Similarity=0.242 Sum_probs=120.6
Q ss_pred cccchHHHHHHHHHhcc--CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEeccccccccc---c---
Q 002012 271 VIGRDDEIRRCIQILSR--RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGTC---Y--- 342 (982)
Q Consensus 271 liG~~~~i~~l~~~L~~--~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~~---~--- 342 (982)
+||.+..++.+.+.+.+ ....+|+|+|++||||+++|++|...... .+.+++.+||+.+....- .
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r-------~~~pfv~vnc~~~~~~~l~~~lfG~ 73 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSKR-------WQGPLVKLNCAALSENLLDSELFGH 73 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhcCc-------cCCCeEEEeCCCCChHHHHHHHhcc
Confidence 47888888877776554 45668999999999999999999876532 267999999987642100 0
Q ss_pred -cccHHHH---HHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCC-------------CeEEEEec
Q 002012 343 -RGDFEKR---LKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRG-------------ELRCIGAT 405 (982)
Q Consensus 343 -~g~~e~~---l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g-------------~i~vI~at 405 (982)
.|.+... -...+. ..+ +.+||||||+.|. .+++..|+.+++.+ ++++|++|
T Consensus 74 ~~g~~~ga~~~~~G~~~---~a~-gGtL~Ldei~~L~--------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at 141 (329)
T TIGR02974 74 EAGAFTGAQKRHQGRFE---RAD-GGTLFLDELATAS--------LLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCAT 141 (329)
T ss_pred ccccccCcccccCCchh---hCC-CCEEEeCChHhCC--------HHHHHHHHHHHHcCcEEecCCCceeccceEEEEec
Confidence 0000000 001122 223 3489999999996 67778888888654 36899999
Q ss_pred CchhHh--hhhhcChHHHhccceEEecCCC----HHHHHHHHHHHHHHHhhhcC----CccChHHHHHHHHHh
Q 002012 406 TLNEYR--NYIEKDPALERRFQQVFCDQPS----VENTISILRGLRERYELHHG----VKISDSALVSAAVLA 468 (982)
Q Consensus 406 ~~~~~~--~~~~~d~al~rRf~~i~i~~Ps----~~e~~~IL~~~~~~~~~~~~----v~i~~~~l~~~~~~s 468 (982)
+.+.-. .--...+.|..||..+.|..|+ .+|+..+++.+..++...++ +.++++++..+..+.
T Consensus 142 ~~~l~~~~~~g~fr~dL~~rl~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~ 214 (329)
T TIGR02974 142 NADLPALAAEGRFRADLLDRLAFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYH 214 (329)
T ss_pred hhhHHHHhhcCchHHHHHHHhcchhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCC
Confidence 876311 1113457788899766666665 56666777777777665444 468999999988874
No 324
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.20 E-value=8.9e-11 Score=133.60 Aligned_cols=188 Identities=19% Similarity=0.273 Sum_probs=134.9
Q ss_pred CCCCCcccchHHHHHHHHHhcc--CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccccc---
Q 002012 266 GKLDPVIGRDDEIRRCIQILSR--RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGT--- 340 (982)
Q Consensus 266 ~~l~~liG~~~~i~~l~~~L~~--~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~--- 340 (982)
....++||++..++++.+.+.+ .+..+||+.|++||||..+|++|.+.-.+. +.+++.+||+++....
T Consensus 138 ~~~~~liG~S~am~~l~~~i~kvA~s~a~VLI~GESGtGKElvAr~IH~~S~R~-------~~PFVavNcaAip~~l~ES 210 (464)
T COG2204 138 SLGGELVGESPAMQQLRRLIAKVAPSDASVLITGESGTGKELVARAIHQASPRA-------KGPFIAVNCAAIPENLLES 210 (464)
T ss_pred cccCCceecCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHhhCccc-------CCCceeeecccCCHHHHHH
Confidence 3567899999988888877655 567789999999999999999999876443 6799999998876320
Q ss_pred ----cccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCC-------------CeEEEE
Q 002012 341 ----CYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRG-------------ELRCIG 403 (982)
Q Consensus 341 ----~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g-------------~i~vI~ 403 (982)
...|.|......-...+...+++ .||||||..|. .+++.-|+.+++.+ ++++|+
T Consensus 211 ELFGhekGAFTGA~~~r~G~fE~A~GG-TLfLDEI~~mp--------l~~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIa 281 (464)
T COG2204 211 ELFGHEKGAFTGAITRRIGRFEQANGG-TLFLDEIGEMP--------LELQVKLLRVLQEREFERVGGNKPIKVDVRIIA 281 (464)
T ss_pred HhhcccccCcCCcccccCcceeEcCCc-eEEeeccccCC--------HHHHHHHHHHHHcCeeEecCCCcccceeeEEEe
Confidence 01222222222212222333444 79999999987 78888999999744 568999
Q ss_pred ecCchhHhh--hhhcChHHHhccceEEecCCC----HHHHHHHHHHHHHHHhhhcC---CccChHHHHHHHHHhh
Q 002012 404 ATTLNEYRN--YIEKDPALERRFQQVFCDQPS----VENTISILRGLRERYELHHG---VKISDSALVSAAVLAD 469 (982)
Q Consensus 404 at~~~~~~~--~~~~d~al~rRf~~i~i~~Ps----~~e~~~IL~~~~~~~~~~~~---v~i~~~~l~~~~~~s~ 469 (982)
+|+.+-... .-..-+.|..|+..+.+..|+ .+|+..++++++.++...++ ..++++++..+..+.+
T Consensus 282 aT~~dL~~~v~~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~~y~W 356 (464)
T COG2204 282 ATNRDLEEEVAAGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALLAYDW 356 (464)
T ss_pred ecCcCHHHHHHcCCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCC
Confidence 998874221 111346677799988888886 66777778888888887654 4789999988887743
No 325
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.20 E-value=2.4e-10 Score=137.36 Aligned_cols=208 Identities=20% Similarity=0.224 Sum_probs=132.6
Q ss_pred CceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccccccccCCCCCccccccCC--chhHHHhhCCCeEEE
Q 002012 693 IASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRLVGAPPGYVGYEEGG--QLTEVVRRRPYSVVL 770 (982)
Q Consensus 693 ~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l~g~~~g~vg~~~~~--~l~~~l~~~~~~Vl~ 770 (982)
++++||.|+||||||++|+.|++.+.. ..+|+++.++.. ...|+|.-.-+.....+. .-.+.+.++.++|||
T Consensus 16 ~g~vLl~G~~GtgKs~lar~l~~~~~~-~~pfv~i~~~~t-----~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~ 89 (589)
T TIGR02031 16 LGGVAIRARAGTGKTALARALAEILPP-IMPFVELPLGVT-----EDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLY 89 (589)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhCCc-CCCeEecCcccc-----hhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEe
Confidence 678999999999999999999998732 346888875311 223455421010000000 012245567788999
Q ss_pred EccccccCHHHHHHHHHhhhcCceecC-CCcEEec-ccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHh
Q 002012 771 FDEIEKAHQDVFNILLQLLDDGRITDS-QGRTVSF-TNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQ 848 (982)
Q Consensus 771 lDEidkl~~~~~~~Ll~~le~g~~~d~-~g~~~~~-~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 848 (982)
+|||+.+++.+|+.|+++|++|.++.. .|..... .++.+|+|+|.... ..
T Consensus 90 lDEi~rl~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~----------------------------~g 141 (589)
T TIGR02031 90 VDMANLLDDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEG----------------------------GG 141 (589)
T ss_pred ccchhhCCHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccc----------------------------cC
Confidence 999999999999999999999986543 2433332 67899999997531 02
Q ss_pred hcChHHHhccccccccCCC-ChhHHHHHHHHHHHHH--------------HHHHHhCCCCccCCHHHHHHHHhcCCCCCC
Q 002012 849 TFRPEFLNRIDEYIVFQPL-DSKEISKIVEIQMNRV--------------KDRLKQKKIDLHYTKEAVTLLGILGFDPNF 913 (982)
Q Consensus 849 ~f~p~ll~Rid~ii~F~pl-~~~~l~~il~~~l~~~--------------~~~~~~~~~~l~i~~~a~~~L~~~~~~~~~ 913 (982)
.|+++|++||+..|...++ +.++..+|+...+..+ ....+..-..+.++++++++|+..+..-
T Consensus 142 ~L~~~LldRf~l~v~~~~~~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~-- 219 (589)
T TIGR02031 142 GLPDHLLDRLALHVSLEDVASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASL-- 219 (589)
T ss_pred CCCHHHHHhccCeeecCCCCCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHc--
Confidence 3899999999876655544 3455567776654322 1122333455789999999999875443
Q ss_pred CchHHHHHHHHHHHHHHHHHHHcC
Q 002012 914 GARPVKRVIQQLVENEIAVAILKG 937 (982)
Q Consensus 914 gaR~L~~~i~~~l~~~la~~~l~~ 937 (982)
|..+++..+. ++..+-|.+.+++
T Consensus 220 gv~s~Ra~i~-~~r~ArA~Aal~g 242 (589)
T TIGR02031 220 GISGHRADLF-AVRAAKAHAALHG 242 (589)
T ss_pred CCCCccHHHH-HHHHHHHHHHHhC
Confidence 3333333332 2444555556655
No 326
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.20 E-value=1.3e-10 Score=135.17 Aligned_cols=178 Identities=17% Similarity=0.246 Sum_probs=115.5
Q ss_pred cccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccc---------
Q 002012 663 KRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYM--------- 733 (982)
Q Consensus 663 ~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~--------- 733 (982)
..++||..+++.+.-++. +..+++|+||||+|||++++.|+..+...... ..++++.+.
T Consensus 191 ~~v~Gq~~~~~al~laa~-----------~G~~llliG~~GsGKTtLak~L~gllpp~~g~-e~le~~~i~s~~g~~~~~ 258 (506)
T PRK09862 191 SDVIGQEQGKRGLEITAA-----------GGHNLLLIGPPGTGKTMLASRINGLLPDLSNE-EALESAAILSLVNAESVQ 258 (506)
T ss_pred EEEECcHHHHhhhheecc-----------CCcEEEEECCCCCcHHHHHHHHhccCCCCCCc-EEEecchhhhhhcccccc
Confidence 578899887766533221 12369999999999999999999887322111 123322221
Q ss_pred ---------ccc-cc--ccccCCCCCccccccCCchhHHHhhCCCeEEEEccccccCHHHHHHHHHhhhcCceecCC-Cc
Q 002012 734 ---------EKH-SV--SRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQ-GR 800 (982)
Q Consensus 734 ---------~~~-~~--~~l~g~~~g~vg~~~~~~l~~~l~~~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~-g~ 800 (982)
.+| +. ..++|.. . ..-.+.+..+.++|||+||++.+++.+++.|++.||+|.++... |.
T Consensus 259 ~~~~~rPfr~ph~~~s~~~l~GGg------~--~~~pG~l~~A~gGvLfLDEi~e~~~~~~~~L~~~LE~g~v~I~r~g~ 330 (506)
T PRK09862 259 KQWRQRPFRSPHHSASLTAMVGGG------A--IPGPGEISLAHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRA 330 (506)
T ss_pred CCcCCCCccCCCccchHHHHhCCC------c--eehhhHhhhccCCEEecCCchhCCHHHHHHHHHHHHcCcEEEecCCc
Confidence 000 00 0122210 0 01245788899999999999999999999999999999986443 33
Q ss_pred EE-ecccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChh
Q 002012 801 TV-SFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSK 870 (982)
Q Consensus 801 ~~-~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~ 870 (982)
.. ...++.+|+|+|+........ ..|.|.......++ ..++..+++|||..|..++++.+
T Consensus 331 ~~~~pa~f~lIAa~NP~pcG~~~~-~~c~c~~~~~~~Y~---------~~ls~plLDRfdL~v~v~~~~~~ 391 (506)
T PRK09862 331 KITYPARFQLVAAMNPSPTGHYQG-NHNRCTPEQTLRYL---------NRLSGPFLDRFDLSLEIPLPPPG 391 (506)
T ss_pred ceeccCCEEEEEeecCccceecCC-CCCCcCHHHHHHHH---------hhCCHhHHhhccEEEEeCCCCHH
Confidence 33 348899999999764322211 01455544444333 34899999999998888887543
No 327
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.19 E-value=3.4e-11 Score=112.75 Aligned_cols=107 Identities=31% Similarity=0.449 Sum_probs=66.4
Q ss_pred eEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccccccccCCC-----CCccccccCCchhHHHhhCCCeEE
Q 002012 695 SFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRLVGAP-----PGYVGYEEGGQLTEVVRRRPYSVV 769 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l~g~~-----~g~vg~~~~~~l~~~l~~~~~~Vl 769 (982)
|+|+.|+||+|||++|+++|+.+ +..|.+|.+..-.. -++++|.+ .+...... +.++ ..|+
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~---~~~f~RIq~tpdll---PsDi~G~~v~~~~~~~f~~~~-GPif-------~~il 66 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSL---GLSFKRIQFTPDLL---PSDILGFPVYDQETGEFEFRP-GPIF-------TNIL 66 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHT---T--EEEEE--TT-----HHHHHEEEEEETTTTEEEEEE--TT--------SSEE
T ss_pred CEeeECCCccHHHHHHHHHHHHc---CCceeEEEecCCCC---cccceeeeeeccCCCeeEeec-Chhh-------hcee
Confidence 58999999999999999999998 77888888753211 23344432 11111111 1222 2499
Q ss_pred EEccccccCHHHHHHHHHhhhcCceecCCCcEEec-ccEEEEEecCCC
Q 002012 770 LFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSF-TNCVVIMTSNIG 816 (982)
Q Consensus 770 ~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~-~~~iiI~tsn~~ 816 (982)
++|||..++|.+|++||++|++++++.. |.+..+ ....+|+|.|+.
T Consensus 67 l~DEiNrappktQsAlLeam~Er~Vt~~-g~~~~lp~pf~ViATqNp~ 113 (131)
T PF07726_consen 67 LADEINRAPPKTQSALLEAMEERQVTID-GQTYPLPDPFFVIATQNPV 113 (131)
T ss_dssp EEETGGGS-HHHHHHHHHHHHHSEEEET-TEEEE--SS-EEEEEE-TT
T ss_pred eecccccCCHHHHHHHHHHHHcCeEEeC-CEEEECCCcEEEEEecCcc
Confidence 9999999999999999999999998853 455555 457888899964
No 328
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=3.2e-10 Score=120.30 Aligned_cols=106 Identities=25% Similarity=0.335 Sum_probs=79.2
Q ss_pred CeEEEEccchhhhhCCCCCc---h-hhHHHHHHhhhcC------------CCeEEEEecCchhHhhhhhcChHHHhccc-
Q 002012 363 QIILFIDELHTIIGAGNQSG---A-MDASNMLKPMLGR------------GELRCIGATTLNEYRNYIEKDPALERRFQ- 425 (982)
Q Consensus 363 ~~IL~IDEi~~l~~~~~~~~---~-~~~~~~L~~~le~------------g~i~vI~at~~~~~~~~~~~d~al~rRf~- 425 (982)
..|+||||||.+...+..++ + .-++.-|+|+++. .+|.||+++...- .+--.+-|.|.-||.
T Consensus 251 ~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~-sKPSDLiPELQGRfPI 329 (444)
T COG1220 251 NGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHV-AKPSDLIPELQGRFPI 329 (444)
T ss_pred cCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceec-CChhhcChhhcCCCce
Confidence 34999999999987765332 1 2366778888863 2678999886642 233367899999997
Q ss_pred eEEecCCCHHHHHHHH----HHHHHHHhh-----hcCCccChHHHHHHHHHhh
Q 002012 426 QVFCDQPSVENTISIL----RGLRERYEL-----HHGVKISDSALVSAAVLAD 469 (982)
Q Consensus 426 ~i~i~~Ps~~e~~~IL----~~~~~~~~~-----~~~v~i~~~~l~~~~~~s~ 469 (982)
.|++...+.++...|| ..+.++|.. ...+.+++++++.+++.+.
T Consensus 330 RVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~ 382 (444)
T COG1220 330 RVELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIAY 382 (444)
T ss_pred EEEcccCCHHHHHHHHcCcchHHHHHHHHHHhhcCeeEEecHHHHHHHHHHHH
Confidence 8899999999999999 467777765 2345778999988888754
No 329
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=9.9e-11 Score=136.54 Aligned_cols=168 Identities=24% Similarity=0.357 Sum_probs=122.8
Q ss_pred hhcccccchHHHHHHHHHHHHHhcCCCC----CCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEecccccccc
Q 002012 661 LHKRVIGQDIAVKSVADAIRRSRAGLSD----PARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKH 736 (982)
Q Consensus 661 l~~~iiGq~~a~~~l~~~i~~~~~g~~~----~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~ 736 (982)
.+.++.|.++++..+.+.+.-.+...++ ..-|.+ ++++||||||||.+|+++|... +.||..+..|+|.+-
T Consensus 148 ~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkG-vlLvGpPGTGKTLLAkAvAgEA---~VPFf~iSGS~FVem- 222 (596)
T COG0465 148 TFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKG-VLLVGPPGTGKTLLAKAVAGEA---GVPFFSISGSDFVEM- 222 (596)
T ss_pred ChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccc-eeEecCCCCCcHHHHHHHhccc---CCCceeccchhhhhh-
Confidence 4578899999999988888654321111 133444 9999999999999999999886 889999999998653
Q ss_pred ccccccCCCCCccccccCCchhHHHhhCCCeEEEEccccccCH--------------HHHHHHHHhhhcCceecCCCcEE
Q 002012 737 SVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEIEKAHQ--------------DVFNILLQLLDDGRITDSQGRTV 802 (982)
Q Consensus 737 ~~~~l~g~~~g~vg~~~~~~l~~~l~~~~~~Vl~lDEidkl~~--------------~~~~~Ll~~le~g~~~d~~g~~~ 802 (982)
++|. |....+.++...+++.+||+||||||.... ...|.||.-||. - ..
T Consensus 223 ----fVGv-----GAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDG-F-~~------ 285 (596)
T COG0465 223 ----FVGV-----GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDG-F-GG------ 285 (596)
T ss_pred ----hcCC-----CcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhcc-C-CC------
Confidence 3343 334446678888877779999999998743 266777777763 1 01
Q ss_pred ecccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHH--hccccccccCCCChhHHHHHHHHHH
Q 002012 803 SFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFL--NRIDEYIVFQPLDSKEISKIVEIQM 880 (982)
Q Consensus 803 ~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll--~Rid~ii~F~pl~~~~l~~il~~~l 880 (982)
-..+++|.+||...- ++|+|+ .|||..|....++-...++|++-.+
T Consensus 286 -~~gviviaaTNRpdV-------------------------------lD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~ 333 (596)
T COG0465 286 -NEGVIVIAATNRPDV-------------------------------LDPALLRPGRFDRQILVELPDIKGREQILKVHA 333 (596)
T ss_pred -CCceEEEecCCCccc-------------------------------chHhhcCCCCcceeeecCCcchhhHHHHHHHHh
Confidence 134788888886531 445555 8999999999999999999988666
Q ss_pred HH
Q 002012 881 NR 882 (982)
Q Consensus 881 ~~ 882 (982)
+.
T Consensus 334 ~~ 335 (596)
T COG0465 334 KN 335 (596)
T ss_pred hc
Confidence 54
No 330
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.19 E-value=1.9e-10 Score=133.42 Aligned_cols=173 Identities=14% Similarity=0.271 Sum_probs=118.1
Q ss_pred eEEeecCCCCchHHHHHHHHHHhcCC--CCceEEEeccccccccccccccCCCCCccccccCCchhHHHhhCCCeEEEEc
Q 002012 695 SFMFMGPTGVGKTELGKALADFLFNT--ENALVRIDMSEYMEKHSVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFD 772 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~~~--~~~~v~i~~s~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~~~~~Vl~lD 772 (982)
+++|+||+|+|||++++++++.+... +..++++++.++.... ... +... ....+.+.++. .++|+||
T Consensus 138 ~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~-~~~-~~~~-------~~~~~~~~~~~--~dlLiiD 206 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDF-VNA-LRNN-------KMEEFKEKYRS--VDLLLID 206 (405)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHH-HHH-HHcC-------CHHHHHHHHHh--CCEEEEe
Confidence 48999999999999999999988543 4678888887764321 000 0000 01123344443 4599999
Q ss_pred cccccCH--HHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhc
Q 002012 773 EIEKAHQ--DVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTF 850 (982)
Q Consensus 773 Eidkl~~--~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 850 (982)
|++.+.. ..+..|+.+++.-. . .+..+|+|+|..+..+. .+
T Consensus 207 Di~~l~~~~~~~~~l~~~~n~~~--~--------~~~~iiits~~~p~~l~---------------------------~l 249 (405)
T TIGR00362 207 DIQFLAGKERTQEEFFHTFNALH--E--------NGKQIVLTSDRPPKELP---------------------------GL 249 (405)
T ss_pred hhhhhcCCHHHHHHHHHHHHHHH--H--------CCCCEEEecCCCHHHHh---------------------------hh
Confidence 9998753 45677777775310 0 12347778886554221 14
Q ss_pred ChHHHhcccc--ccccCCCChhHHHHHHHHHHHHHHHHHHhCCCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHHHHH
Q 002012 851 RPEFLNRIDE--YIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVE 927 (982)
Q Consensus 851 ~p~ll~Rid~--ii~F~pl~~~~l~~il~~~l~~~~~~~~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~l~ 927 (982)
.+.+.+||.. .+.|.|++.+++..|++..+.. .+ +.++++++++|+.. +..+ .|.|..++.++..
T Consensus 250 ~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~-------~~--~~l~~e~l~~ia~~-~~~~--~r~l~~~l~~l~~ 316 (405)
T TIGR00362 250 EERLRSRFEWGLVVDIEPPDLETRLAILQKKAEE-------EG--LELPDEVLEFIAKN-IRSN--VRELEGALNRLLA 316 (405)
T ss_pred hhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHH-------cC--CCCCHHHHHHHHHh-cCCC--HHHHHHHHHHHHH
Confidence 5678889853 7999999999999999987765 33 78999999999986 4443 4888888887543
No 331
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.19 E-value=2.4e-10 Score=128.17 Aligned_cols=182 Identities=21% Similarity=0.225 Sum_probs=123.6
Q ss_pred CCCCcccchHHHHHHHHHhcc--CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccccc---c
Q 002012 267 KLDPVIGRDDEIRRCIQILSR--RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGT---C 341 (982)
Q Consensus 267 ~l~~liG~~~~i~~l~~~L~~--~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~---~ 341 (982)
.++++||.+..++++++.+.+ ....+|+|+|++||||+++|+++...... .+.+++.+||+.+.... .
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r-------~~~pfv~v~c~~~~~~~~~~~ 76 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSSR-------WQGPFISLNCAALNENLLDSE 76 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhCCc-------cCCCeEEEeCCCCCHHHHHHH
Confidence 467899999999888886654 45668999999999999999999865422 26789999998764210 0
Q ss_pred --------ccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCC-------------CeE
Q 002012 342 --------YRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRG-------------ELR 400 (982)
Q Consensus 342 --------~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g-------------~i~ 400 (982)
+.|..... ...+ ...+ +..||||||+.|. ..++..|..+++.+ +++
T Consensus 77 lfg~~~~~~~g~~~~~-~g~l---~~a~-gGtL~l~~i~~L~--------~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~R 143 (326)
T PRK11608 77 LFGHEAGAFTGAQKRH-PGRF---ERAD-GGTLFLDELATAP--------MLVQEKLLRVIEYGELERVGGSQPLQVNVR 143 (326)
T ss_pred HccccccccCCccccc-CCch---hccC-CCeEEeCChhhCC--------HHHHHHHHHHHhcCcEEeCCCCceeeccEE
Confidence 00100000 1122 2223 3479999999996 56777788877643 378
Q ss_pred EEEecCchhH--hhhhhcChHHHhccceEEecCCC----HHHHHHHHHHHHHHHhhhcC----CccChHHHHHHHHHh
Q 002012 401 CIGATTLNEY--RNYIEKDPALERRFQQVFCDQPS----VENTISILRGLRERYELHHG----VKISDSALVSAAVLA 468 (982)
Q Consensus 401 vI~at~~~~~--~~~~~~d~al~rRf~~i~i~~Ps----~~e~~~IL~~~~~~~~~~~~----v~i~~~~l~~~~~~s 468 (982)
+|++|+.+.- ...-...+.|..||..+.|..|+ .+|+..+++.+..++...++ ..++++++..+..+.
T Consensus 144 iI~~s~~~l~~l~~~g~f~~dL~~~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L~~y~ 221 (326)
T PRK11608 144 LVCATNADLPAMVAEGKFRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLLNYR 221 (326)
T ss_pred EEEeCchhHHHHHHcCCchHHHHHhcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhCC
Confidence 9999887532 11223567888899766666665 45666777777777665544 358999999888774
No 332
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.19 E-value=5e-10 Score=126.24 Aligned_cols=150 Identities=21% Similarity=0.280 Sum_probs=110.1
Q ss_pred CcccchHHHHHHHHHhc-cCCCCC-cEEeCCCCCcHHHHHHHHHHHhhcCCCCCCC--------------CCCeEEEEec
Q 002012 270 PVIGRDDEIRRCIQILS-RRTKNN-PVIIGEPGVGKTAIAEGLAQRIVRGDVPETL--------------QNRKLISLDM 333 (982)
Q Consensus 270 ~liG~~~~i~~l~~~L~-~~~~~~-iLL~GppGvGKT~la~~la~~l~~~~~p~~l--------------~~~~v~~l~~ 333 (982)
+++|.++.+.++..... ....+| +||+||||+|||++|.++|+.+.+....... ....+++++.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~ 81 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNP 81 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecc
Confidence 57788888888887666 455677 9999999999999999999999754322111 1357788876
Q ss_pred ccccccccccccHHHHHHHHHHHHHhc---CCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhc--CCCeEEEEecCch
Q 002012 334 ASLVAGTCYRGDFEKRLKAVLKEVTKS---NGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLG--RGELRCIGATTLN 408 (982)
Q Consensus 334 ~~l~~~~~~~g~~e~~l~~l~~~~~~~---~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le--~g~i~vI~at~~~ 408 (982)
++.... .-..+.++++.+..... ++.-|++|||+|.|. .+++|.|+..++ ....++|.+||..
T Consensus 82 s~~~~~----~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt--------~~A~nallk~lEep~~~~~~il~~n~~ 149 (325)
T COG0470 82 SDLRKI----DIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLT--------EDAANALLKTLEEPPKNTRFILITNDP 149 (325)
T ss_pred cccCCC----cchHHHHHHHHHHhccCCCCCCceEEEeCcHHHHh--------HHHHHHHHHHhccCCCCeEEEEEcCCh
Confidence 654421 12344455555544332 345699999999997 678899998888 5688999999966
Q ss_pred hHhhhhhcChHHHhccceEEecCCCHHH
Q 002012 409 EYRNYIEKDPALERRFQQVFCDQPSVEN 436 (982)
Q Consensus 409 ~~~~~~~~d~al~rRf~~i~i~~Ps~~e 436 (982)
. .+-|.+++||..+.|.+|+...
T Consensus 150 ~-----~il~tI~SRc~~i~f~~~~~~~ 172 (325)
T COG0470 150 S-----KILPTIRSRCQRIRFKPPSRLE 172 (325)
T ss_pred h-----hccchhhhcceeeecCCchHHH
Confidence 6 6778999999999998865433
No 333
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.18 E-value=1.5e-10 Score=133.77 Aligned_cols=184 Identities=19% Similarity=0.292 Sum_probs=134.5
Q ss_pred hhhhHHHhhcCCCCCcccchHHHHHHHHHhc----------------------------------cCCCCCcEEeCCCCC
Q 002012 256 GNDLTELARSGKLDPVIGRDDEIRRCIQILS----------------------------------RRTKNNPVIIGEPGV 301 (982)
Q Consensus 256 ~~~l~~~~~~~~l~~liG~~~~i~~l~~~L~----------------------------------~~~~~~iLL~GppGv 301 (982)
.+-|.++|+|..|.+++|-+..-++++..|. |..+.-+||+||||.
T Consensus 258 ~kLWVdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGl 337 (877)
T KOG1969|consen 258 DKLWVDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGL 337 (877)
T ss_pred cceeecccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCC
Confidence 3358999999999999998887777765442 123334678899999
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccccccccccHHHHHHHHHHHHH---hcCCCeEEEEccchhhhhCC
Q 002012 302 GKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGTCYRGDFEKRLKAVLKEVT---KSNGQIILFIDELHTIIGAG 378 (982)
Q Consensus 302 GKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~~~~g~~e~~l~~l~~~~~---~~~~~~IL~IDEi~~l~~~~ 378 (982)
||||||+.+|+.. |+.++++|+++-.++. .+.+++...+..-. +...|.+|+|||||--.
T Consensus 338 GKTTLAHViAkqa----------GYsVvEINASDeRt~~----~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~--- 400 (877)
T KOG1969|consen 338 GKTTLAHVIAKQA----------GYSVVEINASDERTAP----MVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP--- 400 (877)
T ss_pred ChhHHHHHHHHhc----------CceEEEecccccccHH----HHHHHHHHHHhhccccccCCCcceEEEecccCCc---
Confidence 9999999999988 9999999998876553 34444444443211 12567899999999432
Q ss_pred CCCchhhHHHHHHhhhcC------C-----------------CeEEEEecCchhHhhhhhcChHHHh-c-c-ceEEecCC
Q 002012 379 NQSGAMDASNMLKPMLGR------G-----------------ELRCIGATTLNEYRNYIEKDPALER-R-F-QQVFCDQP 432 (982)
Q Consensus 379 ~~~~~~~~~~~L~~~le~------g-----------------~i~vI~at~~~~~~~~~~~d~al~r-R-f-~~i~i~~P 432 (982)
..+.++|+.++.. | .-.+||.||.. ..|+|+- | | ..|.|..|
T Consensus 401 -----~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdL-------YaPaLR~Lr~~A~ii~f~~p 468 (877)
T KOG1969|consen 401 -----RAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDL-------YAPALRPLRPFAEIIAFVPP 468 (877)
T ss_pred -----HHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCc-------cchhhhhcccceEEEEecCC
Confidence 4456666666631 1 11577777764 2677766 2 3 48888889
Q ss_pred CHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhh
Q 002012 433 SVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYI 472 (982)
Q Consensus 433 s~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i 472 (982)
+..-+.+-|+.++.+ .++.++..++..+.++++..|
T Consensus 469 ~~s~Lv~RL~~IC~r----E~mr~d~~aL~~L~el~~~DI 504 (877)
T KOG1969|consen 469 SQSRLVERLNEICHR----ENMRADSKALNALCELTQNDI 504 (877)
T ss_pred ChhHHHHHHHHHHhh----hcCCCCHHHHHHHHHHhcchH
Confidence 988888888888887 789999999999999987655
No 334
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.18 E-value=1.3e-10 Score=122.69 Aligned_cols=173 Identities=18% Similarity=0.332 Sum_probs=113.4
Q ss_pred eEEeecCCCCchHHHHHHHHHHhcC--CCCceEEEeccccccccccccccCCCCCccccccCCchhHHHhhCCCeEEEEc
Q 002012 695 SFMFMGPTGVGKTELGKALADFLFN--TENALVRIDMSEYMEKHSVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFD 772 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~~--~~~~~v~i~~s~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~~~~~Vl~lD 772 (982)
.++++||+|+|||++.+++++.+.. .+..++++++.++....... +- ......+.+.++ ...+|+||
T Consensus 36 ~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~--~~-------~~~~~~~~~~~~--~~DlL~iD 104 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADA--LR-------DGEIEEFKDRLR--SADLLIID 104 (219)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHH--HH-------TTSHHHHHHHHC--TSSEEEEE
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHH--HH-------cccchhhhhhhh--cCCEEEEe
Confidence 4899999999999999999998743 35678888888775431100 00 000011233334 44599999
Q ss_pred cccccCHH--HHHHHHHhhhcCceecCCCcEEecccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhc
Q 002012 773 EIEKAHQD--VFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTF 850 (982)
Q Consensus 773 Eidkl~~~--~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 850 (982)
+++.+... ++..|+.+++.-. . .+..+|+|++..+..+ ..+
T Consensus 105 Di~~l~~~~~~q~~lf~l~n~~~--~--------~~k~li~ts~~~P~~l---------------------------~~~ 147 (219)
T PF00308_consen 105 DIQFLAGKQRTQEELFHLFNRLI--E--------SGKQLILTSDRPPSEL---------------------------SGL 147 (219)
T ss_dssp TGGGGTTHHHHHHHHHHHHHHHH--H--------TTSEEEEEESS-TTTT---------------------------TTS
T ss_pred cchhhcCchHHHHHHHHHHHHHH--h--------hCCeEEEEeCCCCccc---------------------------ccc
Confidence 99999654 5888888876411 1 2245788887655422 126
Q ss_pred ChHHHhcccc--ccccCCCChhHHHHHHHHHHHHHHHHHHhCCCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHHHHH
Q 002012 851 RPEFLNRIDE--YIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVE 927 (982)
Q Consensus 851 ~p~ll~Rid~--ii~F~pl~~~~l~~il~~~l~~~~~~~~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~l~ 927 (982)
.|.+.+|+.. ++.+.|++.++..+|+...... ++ +.++++++++|+.+ ++. ..|.|..++.++..
T Consensus 148 ~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~-------~~--~~l~~~v~~~l~~~-~~~--~~r~L~~~l~~l~~ 214 (219)
T PF00308_consen 148 LPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKE-------RG--IELPEEVIEYLARR-FRR--DVRELEGALNRLDA 214 (219)
T ss_dssp -HHHHHHHHCSEEEEE----HHHHHHHHHHHHHH-------TT----S-HHHHHHHHHH-TTS--SHHHHHHHHHHHHH
T ss_pred ChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHH-------hC--CCCcHHHHHHHHHh-hcC--CHHHHHHHHHHHHH
Confidence 7889999965 7889999999999999988775 45 77999999999997 443 45889888888543
No 335
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.18 E-value=2.2e-10 Score=128.59 Aligned_cols=155 Identities=17% Similarity=0.179 Sum_probs=111.0
Q ss_pred CCCccc-chHHHHHHHHHhccCCCCCc-EEeCCCCCcHHHHHHHHHHHhhcCCCCCCC--------------CCCeEEEE
Q 002012 268 LDPVIG-RDDEIRRCIQILSRRTKNNP-VIIGEPGVGKTAIAEGLAQRIVRGDVPETL--------------QNRKLISL 331 (982)
Q Consensus 268 l~~liG-~~~~i~~l~~~L~~~~~~~i-LL~GppGvGKT~la~~la~~l~~~~~p~~l--------------~~~~v~~l 331 (982)
++.++| ++..++.+...+..+..+|. ||+||+|+|||++|+.+|+.+.+....... ....+..+
T Consensus 4 ~~~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i 83 (329)
T PRK08058 4 WEQLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLV 83 (329)
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEe
Confidence 456788 88888888888887777776 899999999999999999998764311100 01112222
Q ss_pred ecccccccccccccHHHHHHHHHHHHHh---cCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcC--CCeEEEEecC
Q 002012 332 DMASLVAGTCYRGDFEKRLKAVLKEVTK---SNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGR--GELRCIGATT 406 (982)
Q Consensus 332 ~~~~l~~~~~~~g~~e~~l~~l~~~~~~---~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~--g~i~vI~at~ 406 (982)
... +.. -..+.++++.+.+.. .++.-|++|||+|.+. .+++|.|+..+|. +.+.+|.+|+
T Consensus 84 ~~~----~~~---i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~--------~~a~NaLLK~LEEPp~~~~~Il~t~ 148 (329)
T PRK08058 84 APD----GQS---IKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMT--------ASAANSLLKFLEEPSGGTTAILLTE 148 (329)
T ss_pred ccc----ccc---CCHHHHHHHHHHHhhCCcccCceEEEeehHhhhC--------HHHHHHHHHHhcCCCCCceEEEEeC
Confidence 211 110 112345555555442 1344599999999996 6678999999985 6888888888
Q ss_pred chhHhhhhhcChHHHhccceEEecCCCHHHHHHHHH
Q 002012 407 LNEYRNYIEKDPALERRFQQVFCDQPSVENTISILR 442 (982)
Q Consensus 407 ~~~~~~~~~~d~al~rRf~~i~i~~Ps~~e~~~IL~ 442 (982)
... .+.|++++||+.+.+.+|+.++...+|.
T Consensus 149 ~~~-----~ll~TIrSRc~~i~~~~~~~~~~~~~L~ 179 (329)
T PRK08058 149 NKH-----QILPTILSRCQVVEFRPLPPESLIQRLQ 179 (329)
T ss_pred ChH-----hCcHHHHhhceeeeCCCCCHHHHHHHHH
Confidence 666 7889999999999999999998877664
No 336
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=2.1e-10 Score=127.44 Aligned_cols=153 Identities=20% Similarity=0.281 Sum_probs=105.6
Q ss_pred hcCCCCCcccchHHHHHHHHHh----cc---------CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEE
Q 002012 264 RSGKLDPVIGRDDEIRRCIQIL----SR---------RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLIS 330 (982)
Q Consensus 264 ~~~~l~~liG~~~~i~~l~~~L----~~---------~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~ 330 (982)
+|.+|+.++=..+..+++++=| .+ .=+++.|||||||||||+++-++|+.+ ++.||.
T Consensus 196 HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L----------~ydIyd 265 (457)
T KOG0743|consen 196 HPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYL----------NYDIYD 265 (457)
T ss_pred CCCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhc----------CCceEE
Confidence 3566666655545444455433 21 235689999999999999999999999 999999
Q ss_pred EecccccccccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCC---C--Cc-----hhhHHHHHHhhhc-----
Q 002012 331 LDMASLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGN---Q--SG-----AMDASNMLKPMLG----- 395 (982)
Q Consensus 331 l~~~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~---~--~~-----~~~~~~~L~~~le----- 395 (982)
+++++.... . .++.++... ...+||+|.+||.-+.... . .+ +.-...=|+.+++
T Consensus 266 LeLt~v~~n------~--dLr~LL~~t---~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSs 334 (457)
T KOG0743|consen 266 LELTEVKLD------S--DLRHLLLAT---PNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSS 334 (457)
T ss_pred eeeccccCc------H--HHHHHHHhC---CCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhcccccc
Confidence 997765421 1 266666443 5567999999998654211 0 01 1112233555554
Q ss_pred -CCCeEEEEecCchhHhhhhhcChHHHh--ccc-eEEecCCCHHHHHHHHH
Q 002012 396 -RGELRCIGATTLNEYRNYIEKDPALER--RFQ-QVFCDQPSVENTISILR 442 (982)
Q Consensus 396 -~g~i~vI~at~~~~~~~~~~~d~al~r--Rf~-~i~i~~Ps~~e~~~IL~ 442 (982)
.++-++|+|||+.+ .+||||.| |++ .|++...+.+....++.
T Consensus 335 cg~ERIivFTTNh~E-----kLDPALlRpGRmDmhI~mgyCtf~~fK~La~ 380 (457)
T KOG0743|consen 335 CGDERIIVFTTNHKE-----KLDPALLRPGRMDMHIYMGYCTFEAFKTLAS 380 (457)
T ss_pred CCCceEEEEecCChh-----hcCHhhcCCCcceeEEEcCCCCHHHHHHHHH
Confidence 23678899999999 89999999 887 99999999877555544
No 337
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.16 E-value=1.5e-10 Score=131.02 Aligned_cols=152 Identities=20% Similarity=0.293 Sum_probs=97.1
Q ss_pred CCCcccchHHHHHHHHHhccCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEe----ccccccccccc
Q 002012 268 LDPVIGRDDEIRRCIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLD----MASLVAGTCYR 343 (982)
Q Consensus 268 l~~liG~~~~i~~l~~~L~~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~----~~~l~~~~~~~ 343 (982)
++++++.++.++.++..|.. +.|++|+||||||||++|+.+|..+.....+ ....++.+. ..+++.|....
T Consensus 174 l~d~~i~e~~le~l~~~L~~--~~~iil~GppGtGKT~lA~~la~~l~~~~~~---~~v~~VtFHpsySYeDFI~G~rP~ 248 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTI--KKNIILQGPPGVGKTFVARRLAYLLTGEKAP---QRVNMVQFHQSYSYEDFIQGYRPN 248 (459)
T ss_pred hhcccCCHHHHHHHHHHHhc--CCCEEEECCCCCCHHHHHHHHHHHhcCCccc---ceeeEEeecccccHHHHhcccCCC
Confidence 56788899999999998875 5599999999999999999999987432211 112222322 12333332111
Q ss_pred --cc--HHHHHHHHHHHHHhc-CCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhc-----------------------
Q 002012 344 --GD--FEKRLKAVLKEVTKS-NGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLG----------------------- 395 (982)
Q Consensus 344 --g~--~e~~l~~l~~~~~~~-~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le----------------------- 395 (982)
|. ....+.+++..+... ..+.|||||||++...+. +..-+..+++
T Consensus 249 ~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~k-------iFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~ 321 (459)
T PRK11331 249 GVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSK-------VFGEVMMLMEHDKRGENWSVPLTYSENDEERFY 321 (459)
T ss_pred CCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHH-------hhhhhhhhccccccccccceeeecccccccccc
Confidence 10 011233444555432 457899999998754221 1111222221
Q ss_pred -CCCeEEEEecCchhHhhhhhcChHHHhccceEEecCC
Q 002012 396 -RGELRCIGATTLNEYRNYIEKDPALERRFQQVFCDQP 432 (982)
Q Consensus 396 -~g~i~vI~at~~~~~~~~~~~d~al~rRf~~i~i~~P 432 (982)
..++.+|||+|..+ +....+|.||+|||..|.+.+.
T Consensus 322 iP~Nl~IIgTMNt~D-rs~~~lD~AlrRRF~fi~i~p~ 358 (459)
T PRK11331 322 VPENVYIIGLMNTAD-RSLAVVDYALRRRFSFIDIEPG 358 (459)
T ss_pred CCCCeEEEEecCccc-cchhhccHHHHhhhheEEecCC
Confidence 34689999999987 4455789999999998888763
No 338
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.16 E-value=9.5e-10 Score=127.64 Aligned_cols=172 Identities=14% Similarity=0.272 Sum_probs=117.8
Q ss_pred eEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccccccccCCCCCccccccCCchhHHHhhCCCeEEEEccc
Q 002012 695 SFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEI 774 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~~~~~Vl~lDEi 774 (982)
+++|+||+|+|||++++++++.+...+..++++++..+.... ...+.. + ....+...++ ..+||+|||+
T Consensus 143 pl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~--~~~l~~-----~--~~~~f~~~~~--~~dvLiIDDi 211 (445)
T PRK12422 143 PIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHL--VSAIRS-----G--EMQRFRQFYR--NVDALFIEDI 211 (445)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHH--HHHHhc-----c--hHHHHHHHcc--cCCEEEEcch
Confidence 499999999999999999999886556777888776653211 000100 0 0011222222 3459999999
Q ss_pred cccCH--HHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcCh
Q 002012 775 EKAHQ--DVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRP 852 (982)
Q Consensus 775 dkl~~--~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p 852 (982)
+.+.. ..++.|+.++..-. + .+..+|+|||..+..+. .+.+
T Consensus 212 q~l~~k~~~qeelf~l~N~l~--~--------~~k~IIlts~~~p~~l~---------------------------~l~~ 254 (445)
T PRK12422 212 EVFSGKGATQEEFFHTFNSLH--T--------EGKLIVISSTCAPQDLK---------------------------AMEE 254 (445)
T ss_pred hhhcCChhhHHHHHHHHHHHH--H--------CCCcEEEecCCCHHHHh---------------------------hhHH
Confidence 99853 46677777665210 0 12357888876554321 1567
Q ss_pred HHHhccc--cccccCCCChhHHHHHHHHHHHHHHHHHHhCCCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHHHH
Q 002012 853 EFLNRID--EYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLV 926 (982)
Q Consensus 853 ~ll~Rid--~ii~F~pl~~~~l~~il~~~l~~~~~~~~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~l 926 (982)
.+.+||. .++.+.|++.+++..|++..+.. .+ +.++++++++|+.. +.. +.|.|...+..++
T Consensus 255 rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~-------~~--~~l~~evl~~la~~-~~~--dir~L~g~l~~l~ 318 (445)
T PRK12422 255 RLISRFEWGIAIPLHPLTKEGLRSFLERKAEA-------LS--IRIEETALDFLIEA-LSS--NVKSLLHALTLLA 318 (445)
T ss_pred HHHhhhcCCeEEecCCCCHHHHHHHHHHHHHH-------cC--CCCCHHHHHHHHHh-cCC--CHHHHHHHHHHHH
Confidence 8889995 58999999999999999887765 33 78999999999985 443 5589999998864
No 339
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.16 E-value=1.9e-10 Score=129.61 Aligned_cols=143 Identities=28% Similarity=0.376 Sum_probs=97.1
Q ss_pred ccccchHHHHHHHHHHHHHhcCCCCCCCCCce-EEeecCCCCchHHHHHHHHHHhcCCCC--------------------
Q 002012 664 RVIGQDIAVKSVADAIRRSRAGLSDPARPIAS-FMFMGPTGVGKTELGKALADFLFNTEN-------------------- 722 (982)
Q Consensus 664 ~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~-lLf~Gp~GtGKT~lA~~la~~l~~~~~-------------------- 722 (982)
.++|++.++..+...+.... ...| +||+||||+|||++|.++|+.+++...
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~--------~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG--------RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNH 73 (325)
T ss_pred CcccchhHHHHHHHHHHhcC--------CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCC
Confidence 46777777777766665331 1123 999999999999999999999976542
Q ss_pred -ceEEEeccccccccccccccCCCCCccccccCCchhHHHhh----CCCeEEEEccccccCHHHHHHHHHhhhcCceecC
Q 002012 723 -ALVRIDMSEYMEKHSVSRLVGAPPGYVGYEEGGQLTEVVRR----RPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDS 797 (982)
Q Consensus 723 -~~v~i~~s~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~----~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~ 797 (982)
.++.++.++.... .+..+..+.+.+.... .++.|++|||+|.|+.+.+|+|++.+|+.
T Consensus 74 ~d~lel~~s~~~~~------------~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEep----- 136 (325)
T COG0470 74 PDFLELNPSDLRKI------------DIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEEP----- 136 (325)
T ss_pred CceEEecccccCCC------------cchHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHHHHHHHHHHhccC-----
Confidence 2222222221110 0111111222222222 34679999999999999999999999973
Q ss_pred CCcEEecccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCCh
Q 002012 798 QGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDS 869 (982)
Q Consensus 798 ~g~~~~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~ 869 (982)
..++.||++||.... +.|++.+|| ..+.|+|++.
T Consensus 137 ------~~~~~~il~~n~~~~-------------------------------il~tI~SRc-~~i~f~~~~~ 170 (325)
T COG0470 137 ------PKNTRFILITNDPSK-------------------------------ILPTIRSRC-QRIRFKPPSR 170 (325)
T ss_pred ------CCCeEEEEEcCChhh-------------------------------ccchhhhcc-eeeecCCchH
Confidence 267999999994432 667899999 7999998554
No 340
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.16 E-value=1.1e-09 Score=127.64 Aligned_cols=202 Identities=12% Similarity=0.119 Sum_probs=125.4
Q ss_pred CCCCCcc-cchHH--HHHHHHHhccC--CCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccccc
Q 002012 266 GKLDPVI-GRDDE--IRRCIQILSRR--TKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGT 340 (982)
Q Consensus 266 ~~l~~li-G~~~~--i~~l~~~L~~~--~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~ 340 (982)
-+|+..+ |.++. +..+..+.... ..+.++|+|++|+|||+|++++++.+.... .+..++++++..+...
T Consensus 112 ~tFdnFv~g~~n~~A~~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~-----~~~~v~yv~~~~f~~~- 185 (450)
T PRK14087 112 NTFENFVIGSSNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNF-----SDLKVSYMSGDEFARK- 185 (450)
T ss_pred cchhcccCCCcHHHHHHHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHHHHHHhC-----CCCeEEEEEHHHHHHH-
Confidence 4666654 55443 22222332221 234577899999999999999999875422 2678888887665532
Q ss_pred cccccHH---HHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCCCeEEEEecCchhHhhhhhcC
Q 002012 341 CYRGDFE---KRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRGELRCIGATTLNEYRNYIEKD 417 (982)
Q Consensus 341 ~~~g~~e---~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g~i~vI~at~~~~~~~~~~~d 417 (982)
+...+. +.+..+...+. ..-+|+|||++.+.+.. .....+.+++....+.+. .+|.+++..+- ..-.++
T Consensus 186 -~~~~l~~~~~~~~~~~~~~~---~~dvLiIDDiq~l~~k~--~~~e~lf~l~N~~~~~~k-~iIltsd~~P~-~l~~l~ 257 (450)
T PRK14087 186 -AVDILQKTHKEIEQFKNEIC---QNDVLIIDDVQFLSYKE--KTNEIFFTIFNNFIENDK-QLFFSSDKSPE-LLNGFD 257 (450)
T ss_pred -HHHHHHHhhhHHHHHHHHhc---cCCEEEEeccccccCCH--HHHHHHHHHHHHHHHcCC-cEEEECCCCHH-HHhhcc
Confidence 111111 11222222222 23389999999875221 112345555556666666 44555544331 223478
Q ss_pred hHHHhccc---eEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCCcchhhHHHHHHH
Q 002012 418 PALERRFQ---QVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLPDKAIDLVDEAA 489 (982)
Q Consensus 418 ~al~rRf~---~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~p~~a~~lld~a~ 489 (982)
+.+.+||. .+.+.+|+.+++.+||+...+... ....++++++.+++..+.+. ++.+..+++...
T Consensus 258 ~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~g--l~~~l~~evl~~Ia~~~~gd------~R~L~gaL~~l~ 324 (450)
T PRK14087 258 NRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQN--IKQEVTEEAINFISNYYSDD------VRKIKGSVSRLN 324 (450)
T ss_pred HHHHHHHhCCceeccCCcCHHHHHHHHHHHHHhcC--CCCCCCHHHHHHHHHccCCC------HHHHHHHHHHHH
Confidence 99999995 888999999999999988776521 12379999999999987643 356666666554
No 341
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.16 E-value=8.9e-10 Score=124.91 Aligned_cols=170 Identities=21% Similarity=0.407 Sum_probs=114.5
Q ss_pred cccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEecccccccccccccc
Q 002012 663 KRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRLV 742 (982)
Q Consensus 663 ~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l~ 742 (982)
..+++.+..++.+..++... .+++|+||||||||++|+.+|..+.+ ...+..+++-.+...++...++
T Consensus 175 ~d~~i~e~~le~l~~~L~~~-----------~~iil~GppGtGKT~lA~~la~~l~~-~~~~~~v~~VtFHpsySYeDFI 242 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK-----------KNIILQGPPGVGKTFVARRLAYLLTG-EKAPQRVNMVQFHQSYSYEDFI 242 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC-----------CCEEEECCCCCCHHHHHHHHHHHhcC-CcccceeeEEeecccccHHHHh
Confidence 45777777877777766521 14999999999999999999998844 3345566666666666666666
Q ss_pred -CCCCCccccccC-CchhHH---HhhC--CCeEEEEccccccCHH-HHHHHHHhhhcCc------ee----cCCC-cEEe
Q 002012 743 -GAPPGYVGYEEG-GQLTEV---VRRR--PYSVVLFDEIEKAHQD-VFNILLQLLDDGR------IT----DSQG-RTVS 803 (982)
Q Consensus 743 -g~~~g~vg~~~~-~~l~~~---l~~~--~~~Vl~lDEidkl~~~-~~~~Ll~~le~g~------~~----d~~g-~~~~ 803 (982)
|..++++|+... +.+.+. +... .+.|||||||+.++.+ ++..|+++||.+. +. ...+ .-..
T Consensus 243 ~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~i 322 (459)
T PRK11331 243 QGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYV 322 (459)
T ss_pred cccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhccccccccccceeeeccccccccccC
Confidence 667777777644 334333 3333 3579999999999966 6889999998642 11 1111 1223
Q ss_pred cccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCC-CChhHH
Q 002012 804 FTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQP-LDSKEI 872 (982)
Q Consensus 804 ~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~p-l~~~~l 872 (982)
..|+.||+|+|.....+ ..++++|.+|| ..|.+.| ++...+
T Consensus 323 P~Nl~IIgTMNt~Drs~---------------------------~~lD~AlrRRF-~fi~i~p~~~~~~~ 364 (459)
T PRK11331 323 PENVYIIGLMNTADRSL---------------------------AVVDYALRRRF-SFIDIEPGFDTPQF 364 (459)
T ss_pred CCCeEEEEecCccccch---------------------------hhccHHHHhhh-heEEecCCCChHHH
Confidence 48999999999754311 12688999999 4666666 444333
No 342
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.16 E-value=3e-10 Score=136.42 Aligned_cols=189 Identities=23% Similarity=0.296 Sum_probs=128.7
Q ss_pred hcCCCCCcccchHHHHHHHHHhcc--CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccccc-
Q 002012 264 RSGKLDPVIGRDDEIRRCIQILSR--RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGT- 340 (982)
Q Consensus 264 ~~~~l~~liG~~~~i~~l~~~L~~--~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~- 340 (982)
+...++.+||++..++++++.+.+ ....+++|+||+|||||++|++|+..... .+.+++.+||+.+....
T Consensus 191 ~~~~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r-------~~~pfv~i~c~~~~~~~~ 263 (534)
T TIGR01817 191 RSGKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPR-------AKRPFVKVNCAALSETLL 263 (534)
T ss_pred ccCccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCCC-------CCCCeEEeecCCCCHHHH
Confidence 446788999999999998887654 45668999999999999999999986532 26789999998764210
Q ss_pred --c----ccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCC-------------CeEE
Q 002012 341 --C----YRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRG-------------ELRC 401 (982)
Q Consensus 341 --~----~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g-------------~i~v 401 (982)
. ..|.+..........+...+ +.+||||||+.|. .+.+..|..+++.+ ++++
T Consensus 264 ~~~lfg~~~~~~~~~~~~~~g~~~~a~-~GtL~ldei~~L~--------~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~ri 334 (534)
T TIGR01817 264 ESELFGHEKGAFTGAIAQRKGRFELAD-GGTLFLDEIGEIS--------PAFQAKLLRVLQEGEFERVGGNRTLKVDVRL 334 (534)
T ss_pred HHHHcCCCCCccCCCCcCCCCcccccC-CCeEEEechhhCC--------HHHHHHHHHHHhcCcEEECCCCceEeecEEE
Confidence 0 00000000000000011223 3489999999996 66778888888654 3789
Q ss_pred EEecCchhHh--hhhhcChHHHhccceEEecCCC----HHHHHHHHHHHHHHHhhhcC--CccChHHHHHHHHHh
Q 002012 402 IGATTLNEYR--NYIEKDPALERRFQQVFCDQPS----VENTISILRGLRERYELHHG--VKISDSALVSAAVLA 468 (982)
Q Consensus 402 I~at~~~~~~--~~~~~d~al~rRf~~i~i~~Ps----~~e~~~IL~~~~~~~~~~~~--v~i~~~~l~~~~~~s 468 (982)
|++|+.+... ..-...+.|..|+..+.+..|+ .+|+..+++.++.++...++ +.++++++..+..+.
T Consensus 335 I~~s~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~~~ 409 (534)
T TIGR01817 335 VAATNRDLEEAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVLMSCK 409 (534)
T ss_pred EEeCCCCHHHHHHcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhCC
Confidence 9998876422 1123567788898766666554 56777788888877765443 679999999888773
No 343
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=99.16 E-value=1.2e-10 Score=129.65 Aligned_cols=160 Identities=16% Similarity=0.167 Sum_probs=103.7
Q ss_pred ccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCC-----CceEEEecccccccccccc
Q 002012 666 IGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTE-----NALVRIDMSEYMEKHSVSR 740 (982)
Q Consensus 666 iGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~-----~~~v~i~~s~~~~~~~~~~ 740 (982)
.++....+.+... + .+-...+||+||+|+||+++|+.+|+.+.+.+ .++-.+..........+.+
T Consensus 4 PW~~~~~~~l~~~--~--------~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD 73 (342)
T PRK06964 4 PWQTDDWNRLQAL--R--------ARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPD 73 (342)
T ss_pred cccHHHHHHHHHh--c--------CCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCC
Confidence 4566666666542 1 22223599999999999999999999996643 1221111011111111111
Q ss_pred c--cCCC----------------------------CCccccccCCchhHHHhh----CCCeEEEEccccccCHHHHHHHH
Q 002012 741 L--VGAP----------------------------PGYVGYEEGGQLTEVVRR----RPYSVVLFDEIEKAHQDVFNILL 786 (982)
Q Consensus 741 l--~g~~----------------------------~g~vg~~~~~~l~~~l~~----~~~~Vl~lDEidkl~~~~~~~Ll 786 (982)
+ +... ...++.++.+.+.+.+.. +++.|++||++|+|+....|+||
T Consensus 74 ~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLL 153 (342)
T PRK06964 74 YRIVRPEALAAEAPGAADEAKEADADEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNVAAANALL 153 (342)
T ss_pred EEEEecccccccccccccccccchhhcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCHHHHHHHH
Confidence 1 1100 011222233334444433 34679999999999999999999
Q ss_pred HhhhcCceecCCCcEEecccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCC
Q 002012 787 QLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQP 866 (982)
Q Consensus 787 ~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~p 866 (982)
+.||+ +..+++||++|+.... +.|++++|| ..+.|+|
T Consensus 154 KtLEE-----------Pp~~t~fiL~t~~~~~-------------------------------LLpTI~SRc-q~i~~~~ 190 (342)
T PRK06964 154 KTLEE-----------PPPGTVFLLVSARIDR-------------------------------LLPTILSRC-RQFPMTV 190 (342)
T ss_pred HHhcC-----------CCcCcEEEEEECChhh-------------------------------CcHHHHhcC-EEEEecC
Confidence 99997 2357889998876543 788999999 7999999
Q ss_pred CChhHHHHHHHH
Q 002012 867 LDSKEISKIVEI 878 (982)
Q Consensus 867 l~~~~l~~il~~ 878 (982)
++.+++.+.+..
T Consensus 191 ~~~~~~~~~L~~ 202 (342)
T PRK06964 191 PAPEAAAAWLAA 202 (342)
T ss_pred CCHHHHHHHHHH
Confidence 999999888765
No 344
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=99.15 E-value=2.7e-10 Score=118.25 Aligned_cols=113 Identities=27% Similarity=0.403 Sum_probs=87.7
Q ss_pred eEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHH
Q 002012 767 SVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELA 846 (982)
Q Consensus 767 ~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 846 (982)
+|+||||++.++-+.+..|.+.||+-- .-++||+||.|...+...-.-..
T Consensus 298 GVLFIDEVhMLDiEcFTyL~kalES~i------------aPivifAsNrG~~~irGt~d~~s------------------ 347 (456)
T KOG1942|consen 298 GVLFIDEVHMLDIECFTYLHKALESPI------------APIVIFASNRGMCTIRGTEDILS------------------ 347 (456)
T ss_pred cceEeeehhhhhhHHHHHHHHHhcCCC------------CceEEEecCCcceeecCCcCCCC------------------
Confidence 499999999999999999999999621 35899999988764433200000
Q ss_pred HhhcChHHHhccccccccCCCChhHHHHHHHHHHHHHHHHHHhCCCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHH
Q 002012 847 RQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQ 924 (982)
Q Consensus 847 ~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~~~~~~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~ 924 (982)
-..+++++++|+ .+|+..|++.+++++|+....+. .+ +.+++++++.|...+.. +.|+.+++-
T Consensus 348 PhGip~dllDRl-~Iirt~~y~~~e~r~Ii~~Ra~~-------E~--l~~~e~a~~~l~~~gt~-----tsLRy~vqL 410 (456)
T KOG1942|consen 348 PHGIPPDLLDRL-LIIRTLPYDEEEIRQIIKIRAQV-------EG--LQVEEEALDLLAEIGTS-----TSLRYAVQL 410 (456)
T ss_pred CCCCCHHHhhhe-eEEeeccCCHHHHHHHHHHHHhh-------hc--ceecHHHHHHHHhhccc-----hhHHHHHHh
Confidence 034789999999 79999999999999999877654 34 88999999999987544 467777763
No 345
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.15 E-value=5e-10 Score=134.74 Aligned_cols=135 Identities=18% Similarity=0.260 Sum_probs=89.1
Q ss_pred hHHHhhCCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCc----------EEecccEEEEEecCCChHHHHHhhhhc
Q 002012 758 TEVVRRRPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGR----------TVSFTNCVVIMTSNIGSHYILETLQSV 827 (982)
Q Consensus 758 ~~~l~~~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~----------~~~~~~~iiI~tsn~~~~~i~~~~~~~ 827 (982)
.+.+.++.+++|||||++.+++..|..|+++|+++++....+. .....++++|+++|... .
T Consensus 210 ~G~L~~AngGtL~Ldei~~L~~~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~---l------ 280 (608)
T TIGR00764 210 AGAIHRAHKGVLYIDEIKTMPLEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDD---L------ 280 (608)
T ss_pred CCceEECCCCEEEEEChHhCCHHHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHH---H------
Confidence 3456677889999999999999999999999999987654321 11124789999998531 0
Q ss_pred ccchHHHHHHHHHHHHHHHHhhcChHHHhccc---cccccCCC---ChhHHHHHHHHHHHHHHHHHHhCCCCccCCHHHH
Q 002012 828 QDSKEAVYEVMKKQVVELARQTFRPEFLNRID---EYIVFQPL---DSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAV 901 (982)
Q Consensus 828 ~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid---~ii~F~pl---~~~~l~~il~~~l~~~~~~~~~~~~~l~i~~~a~ 901 (982)
..++|+|++||+ ..+.|.+. +.+...++++ .+.+.++..|....++++++
T Consensus 281 --------------------~~l~~~l~~rf~~y~v~v~~~~~~~~~~e~~~~~~~----~i~~~~~r~G~l~~~s~~Av 336 (608)
T TIGR00764 281 --------------------EGMHPALRSRIRGYGYEVYMKDTMPDTPENRDKLVQ----FVAQEVKKDGRIPHFTRDAV 336 (608)
T ss_pred --------------------hhcCHHHHHHhcCCeEEEEeeccCCCCHHHHHHHHH----HHHHHHHHhCCCCcCCHHHH
Confidence 127899999998 55666543 4445444433 23333444544458999999
Q ss_pred HHHHhcCC-----CC--CCCchHHHHHHHHH
Q 002012 902 TLLGILGF-----DP--NFGARPVKRVIQQL 925 (982)
Q Consensus 902 ~~L~~~~~-----~~--~~gaR~L~~~i~~~ 925 (982)
+.|.++.. .. ....|.|.++++..
T Consensus 337 ~~Li~~~~R~ag~r~~lsl~~R~L~~llR~A 367 (608)
T TIGR00764 337 EEIVREAQRRAGRKDHLTLRLRELGGLVRAA 367 (608)
T ss_pred HHHHHHHHHHHhcccccCCCHHHHHHHHHHH
Confidence 88875311 11 12347777777653
No 346
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.15 E-value=4.4e-10 Score=132.03 Aligned_cols=173 Identities=14% Similarity=0.288 Sum_probs=116.6
Q ss_pred ceEEeecCCCCchHHHHHHHHHHhcCC--CCceEEEeccccccccccccccCCCCCccccccCCchhHHHhhCCCeEEEE
Q 002012 694 ASFMFMGPTGVGKTELGKALADFLFNT--ENALVRIDMSEYMEKHSVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLF 771 (982)
Q Consensus 694 ~~lLf~Gp~GtGKT~lA~~la~~l~~~--~~~~v~i~~s~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~~~~~Vl~l 771 (982)
.+++|+||||+|||++++++++.+... +..++.+++.++.... ... +.. .....+.+.++. ..+|+|
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~-~~~-~~~-------~~~~~~~~~~~~--~dlLii 217 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDF-VNA-LRN-------NTMEEFKEKYRS--VDVLLI 217 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHH-HHH-HHc-------CcHHHHHHHHhc--CCEEEE
Confidence 359999999999999999999998543 4567788887764321 000 100 000123334443 459999
Q ss_pred ccccccCH--HHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhh
Q 002012 772 DEIEKAHQ--DVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQT 849 (982)
Q Consensus 772 DEidkl~~--~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 849 (982)
||++.+.. ..+..|+.+++.-. + .+..+|+|+|..+..+..
T Consensus 218 DDi~~l~~~~~~~~~l~~~~n~l~--~--------~~~~iiits~~~p~~l~~--------------------------- 260 (450)
T PRK00149 218 DDIQFLAGKERTQEEFFHTFNALH--E--------AGKQIVLTSDRPPKELPG--------------------------- 260 (450)
T ss_pred ehhhhhcCCHHHHHHHHHHHHHHH--H--------CCCcEEEECCCCHHHHHH---------------------------
Confidence 99998743 35666776665311 0 112367777765543211
Q ss_pred cChHHHhccc--cccccCCCChhHHHHHHHHHHHHHHHHHHhCCCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHHHH
Q 002012 850 FRPEFLNRID--EYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLV 926 (982)
Q Consensus 850 f~p~ll~Rid--~ii~F~pl~~~~l~~il~~~l~~~~~~~~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~l 926 (982)
+.+.+.+||. .++.|.|++.+++..|++..+.. . .+.++++++++|+.. +.+ .+|.|..++.++.
T Consensus 261 l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~-------~--~~~l~~e~l~~ia~~-~~~--~~R~l~~~l~~l~ 327 (450)
T PRK00149 261 LEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEE-------E--GIDLPDEVLEFIAKN-ITS--NVRELEGALNRLI 327 (450)
T ss_pred HHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHH-------c--CCCCCHHHHHHHHcC-cCC--CHHHHHHHHHHHH
Confidence 5567889995 37999999999999999988764 2 378999999999987 333 3588888888754
No 347
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.15 E-value=1.5e-10 Score=120.05 Aligned_cols=226 Identities=20% Similarity=0.325 Sum_probs=149.4
Q ss_pred hhhcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhc---CCCCceEEEecccccccc
Q 002012 660 VLHKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLF---NTENALVRIDMSEYMEKH 736 (982)
Q Consensus 660 ~l~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~---~~~~~~v~i~~s~~~~~~ 736 (982)
.|+..|--...+.+.+.+.|.+...... ..+|+.||+|.||+.+|+.|.+.-. .-..+|+.+||..+....
T Consensus 181 ~lksgiatrnp~fnrmieqierva~rsr------~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~ 254 (531)
T COG4650 181 FLKSGIATRNPHFNRMIEQIERVAIRSR------APILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDT 254 (531)
T ss_pred HHHhcccccChHHHHHHHHHHHHHhhcc------CCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCch
Confidence 3445666666777777777766543221 1299999999999999999986531 114689999999998888
Q ss_pred ccccccCCCCC-ccccccCCchhHHHhhCCCeEEEEccccccCHHHHHHHHHhhhcCceecCC-CcEEecccEEEEEecC
Q 002012 737 SVSRLVGAPPG-YVGYEEGGQLTEVVRRRPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQ-GRTVSFTNCVVIMTSN 814 (982)
Q Consensus 737 ~~~~l~g~~~g-~vg~~~~~~l~~~l~~~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~-g~~~~~~~~iiI~tsn 814 (982)
..+.|+|...| +.|..+. -.+.++.+.++++|+|||..+..+-|.+|++.+|+.++..-. .+.+ -++.-+|+.|-
T Consensus 255 amsalfghvkgaftga~~~--r~gllrsadggmlfldeigelgadeqamllkaieekrf~pfgsdr~v-~sdfqliagtv 331 (531)
T COG4650 255 AMSALFGHVKGAFTGARES--REGLLRSADGGMLFLDEIGELGADEQAMLLKAIEEKRFYPFGSDRQV-SSDFQLIAGTV 331 (531)
T ss_pred HHHHHHhhhccccccchhh--hhhhhccCCCceEehHhhhhcCccHHHHHHHHHHhhccCCCCCcccc-ccchHHhhhhH
Confidence 88889998765 4554332 356788899999999999999999999999999998765422 1221 12333343332
Q ss_pred CChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCC----hhHHHHHHHHHHHHHHHHHHhC
Q 002012 815 IGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLD----SKEISKIVEIQMNRVKDRLKQK 890 (982)
Q Consensus 815 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~----~~~l~~il~~~l~~~~~~~~~~ 890 (982)
.+.. ..+ ..+.|+.+++.||+ ...|.-+. .++++--+...+.+.. ...
T Consensus 332 rdlr---------------------q~v---aeg~fredl~arin-lwtf~lpgl~qr~ediepnldyelerha---~~~ 383 (531)
T COG4650 332 RDLR---------------------QLV---AEGKFREDLYARIN-LWTFTLPGLRQRQEDIEPNLDYELERHA---SLT 383 (531)
T ss_pred HHHH---------------------HHH---hccchHHHHHHhhh-eeeeeccccccCccccCCCccHHHHHHH---Hhh
Confidence 2211 111 13568899999995 55554433 3566555555555433 334
Q ss_pred CCCccCCHHHHH-HHHh-----cCCCCCCCchHHHHHHHH
Q 002012 891 KIDLHYTKEAVT-LLGI-----LGFDPNFGARPVKRVIQQ 924 (982)
Q Consensus 891 ~~~l~i~~~a~~-~L~~-----~~~~~~~gaR~L~~~i~~ 924 (982)
|-.+.+..++.. +|.- ..|.+|| |+|...|.+
T Consensus 384 g~~vrfntearra~l~fa~spqa~w~gnf--relsasvtr 421 (531)
T COG4650 384 GDSVRFNTEARRAWLAFATSPQATWRGNF--RELSASVTR 421 (531)
T ss_pred CceeeeehHHHHHHHHhccCcchhhcccH--HHHhHHHHH
Confidence 666778777764 4432 2466666 788776665
No 348
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.14 E-value=1e-09 Score=127.34 Aligned_cols=196 Identities=22% Similarity=0.281 Sum_probs=124.5
Q ss_pred cccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCC--CCceEEEecccccccccc--
Q 002012 663 KRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNT--ENALVRIDMSEYMEKHSV-- 738 (982)
Q Consensus 663 ~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~--~~~~v~i~~s~~~~~~~~-- 738 (982)
..++|.+..++.|...+.....+ ..+ .+++++||||||||++++.+++.+... +..++.+||........+
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~~----~~~-~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~ 104 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALRG----SRP-LNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFS 104 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCC----CCC-CeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHH
Confidence 67889999999999998765433 222 258999999999999999999987332 356889999876443221
Q ss_pred ---ccccCCCCCccccccC---CchhHHHhh-CCCeEEEEccccccC----HHHHHHHHHhhhcCceecCCCcEEecccE
Q 002012 739 ---SRLVGAPPGYVGYEEG---GQLTEVVRR-RPYSVVLFDEIEKAH----QDVFNILLQLLDDGRITDSQGRTVSFTNC 807 (982)
Q Consensus 739 ---~~l~g~~~g~vg~~~~---~~l~~~l~~-~~~~Vl~lDEidkl~----~~~~~~Ll~~le~g~~~d~~g~~~~~~~~ 807 (982)
..+.+.+....|.... ..+.+.+.. ..+.||+|||+|.+. .+.+..|+..++... -.++
T Consensus 105 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~----------~~~v 174 (394)
T PRK00411 105 EIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYP----------GARI 174 (394)
T ss_pred HHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccC----------CCeE
Confidence 1222322212221111 122333333 234699999999986 445566665554310 1257
Q ss_pred EEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccc-cccccCCCChhHHHHHHHHHHHHHHHH
Q 002012 808 VVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRID-EYIVFQPLDSKEISKIVEIQMNRVKDR 886 (982)
Q Consensus 808 iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid-~ii~F~pl~~~~l~~il~~~l~~~~~~ 886 (982)
.+|+++|.... . ..+.+.+.+|+. ..|.|+|++.+++.+|+...+..-
T Consensus 175 ~vI~i~~~~~~--~--------------------------~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~--- 223 (394)
T PRK00411 175 GVIGISSDLTF--L--------------------------YILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEG--- 223 (394)
T ss_pred EEEEEECCcch--h--------------------------hhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhh---
Confidence 78888885321 0 114455556663 468999999999999998776431
Q ss_pred HHhCCCCccCCHHHHHHHHhcC
Q 002012 887 LKQKKIDLHYTKEAVTLLGILG 908 (982)
Q Consensus 887 ~~~~~~~l~i~~~a~~~L~~~~ 908 (982)
+ ..-.+++++++.+++..
T Consensus 224 ~----~~~~~~~~~l~~i~~~~ 241 (394)
T PRK00411 224 F----YPGVVDDEVLDLIADLT 241 (394)
T ss_pred c----ccCCCCHhHHHHHHHHH
Confidence 1 12357899998887753
No 349
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=7.4e-10 Score=121.00 Aligned_cols=170 Identities=22% Similarity=0.334 Sum_probs=120.0
Q ss_pred CCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEeccccccccccccc-HHHHHHHHHHHHH---hcCCCe
Q 002012 289 TKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGTCYRGD-FEKRLKAVLKEVT---KSNGQI 364 (982)
Q Consensus 289 ~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~~~~g~-~e~~l~~l~~~~~---~~~~~~ 364 (982)
.+.|+||+||+|+|||.||+-||+.+ +.++.-+||..|.. +.|.|+ +|.-+.+++..+. ......
T Consensus 225 eKSNvLllGPtGsGKTllaqTLAr~l----------dVPfaIcDcTtLTQ-AGYVGeDVEsvi~KLl~~A~~nVekAQqG 293 (564)
T KOG0745|consen 225 EKSNVLLLGPTGSGKTLLAQTLARVL----------DVPFAICDCTTLTQ-AGYVGEDVESVIQKLLQEAEYNVEKAQQG 293 (564)
T ss_pred ecccEEEECCCCCchhHHHHHHHHHh----------CCCeEEecccchhh-cccccccHHHHHHHHHHHccCCHHHHhcC
Confidence 57899999999999999999999999 99999999998884 458885 5556667766543 112345
Q ss_pred EEEEccchhhhhCCCC------CchhhHHHHHHhhhcC-----------------------CCeEEEEecCchhHhhh--
Q 002012 365 ILFIDELHTIIGAGNQ------SGAMDASNMLKPMLGR-----------------------GELRCIGATTLNEYRNY-- 413 (982)
Q Consensus 365 IL~IDEi~~l~~~~~~------~~~~~~~~~L~~~le~-----------------------g~i~vI~at~~~~~~~~-- 413 (982)
|+||||+|.+..+..+ -+..-++..|+.++|. .+|.||+..-.....+.
T Consensus 294 IVflDEvDKi~~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~ 373 (564)
T KOG0745|consen 294 IVFLDEVDKITKKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIIS 373 (564)
T ss_pred eEEEehhhhhcccCccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHH
Confidence 9999999999844221 1123466777777741 14566654322211111
Q ss_pred -------------------------------------------------hhcChHHHhccc-eEEecCCCHHHHHHHH--
Q 002012 414 -------------------------------------------------IEKDPALERRFQ-QVFCDQPSVENTISIL-- 441 (982)
Q Consensus 414 -------------------------------------------------~~~d~al~rRf~-~i~i~~Ps~~e~~~IL-- 441 (982)
+.+-|.|.-||. .|.+...+.+++..||
T Consensus 374 rR~~d~slGFg~~s~~~vr~~~~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfVGRfPVlVplh~L~~~~Lv~VLtE 453 (564)
T KOG0745|consen 374 RRLDDKSLGFGAPSSKGVRANMATKSGVENDAEKRDELLEKVESGDLISFGMIPEFVGRFPVLVPLHSLDEDQLVRVLTE 453 (564)
T ss_pred HhhcchhcccCCCCCccchhhcccccCcchhHHHHHHHHhhccccchhhhcCcHHHhcccceEeeccccCHHHHHHHHhc
Confidence 123488899997 6677778999999999
Q ss_pred --HHHHHHHhhhc-----CCccChHHHHHHHHHhh
Q 002012 442 --RGLRERYELHH-----GVKISDSALVSAAVLAD 469 (982)
Q Consensus 442 --~~~~~~~~~~~-----~v~i~~~~l~~~~~~s~ 469 (982)
..+..+|.+.+ .+.+++++++.++.++-
T Consensus 454 PknaL~~Qyk~lf~~~nV~L~fTe~Al~~IAq~Al 488 (564)
T KOG0745|consen 454 PKNALGKQYKKLFGMDNVELHFTEKALEAIAQLAL 488 (564)
T ss_pred chhhHHHHHHHHhccCCeeEEecHHHHHHHHHHHH
Confidence 46777777633 35689999999988863
No 350
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.14 E-value=9.2e-11 Score=118.55 Aligned_cols=110 Identities=25% Similarity=0.382 Sum_probs=73.4
Q ss_pred CCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccccccccccHHHHHHHHHH----HHHhcCCCe
Q 002012 289 TKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGTCYRGDFEKRLKAVLK----EVTKSNGQI 364 (982)
Q Consensus 289 ~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~~~~g~~e~~l~~l~~----~~~~~~~~~ 364 (982)
+..+++|+||+|||||.+|++||+.+.- -...+++.+||+.+..+. +....+..++. .+.. ....
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~------~~~~~~~~~d~s~~~~~~----~~~~~~~~l~~~~~~~v~~-~~~g 70 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFV------GSERPLIRIDMSEYSEGD----DVESSVSKLLGSPPGYVGA-EEGG 70 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-------SSCCEEEEEEGGGHCSHH----HCSCHCHHHHHHTTCHHHH-HHHT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhcc------CCccchHHHhhhcccccc----hHHhhhhhhhhcccceeec-cchh
Confidence 5678999999999999999999999931 125699999999888621 00111111111 1111 1112
Q ss_pred EEEEccchhhhhCCCCC---chhhHHHHHHhhhcCC-------------CeEEEEecCchh
Q 002012 365 ILFIDELHTIIGAGNQS---GAMDASNMLKPMLGRG-------------ELRCIGATTLNE 409 (982)
Q Consensus 365 IL~IDEi~~l~~~~~~~---~~~~~~~~L~~~le~g-------------~i~vI~at~~~~ 409 (982)
|||||||+.+.+..... ....+++.|+++++.| ++.+|+|+|...
T Consensus 71 VVllDEidKa~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 71 VVLLDEIDKAHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp EEEEETGGGCSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred hhhhHHHhhccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 99999999998642111 1247889999999754 568899998765
No 351
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=99.14 E-value=5.1e-10 Score=133.98 Aligned_cols=119 Identities=13% Similarity=0.183 Sum_probs=82.7
Q ss_pred HHHhhCCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCc----------EEecccEEEEEecCCChHHHHHhhhhcc
Q 002012 759 EVVRRRPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGR----------TVSFTNCVVIMTSNIGSHYILETLQSVQ 828 (982)
Q Consensus 759 ~~l~~~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~----------~~~~~~~iiI~tsn~~~~~i~~~~~~~~ 828 (982)
+.+.++.+++|||||++.+++..|..|+++|+++++....+. ..-..++.+|+++|....
T Consensus 220 G~L~kAnGGtL~LDei~~L~~~~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~~ll---------- 289 (637)
T PRK13765 220 GAIHKAHKGVLFIDEINTLDLESQQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNLDAL---------- 289 (637)
T ss_pred CceeECCCcEEEEeChHhCCHHHHHHHHHHHHhCCEEecccccccccccCCCcceeeeeEEEEecCcCHH----------
Confidence 445577889999999999999999999999999987653220 111246889999997431
Q ss_pred cchHHHHHHHHHHHHHHHHhhcChHHHhccc---cccccCCCChhHHHHHHHHHHHHHHHHHHhCCCCccCCHHHHHHHH
Q 002012 829 DSKEAVYEVMKKQVVELARQTFRPEFLNRID---EYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLG 905 (982)
Q Consensus 829 ~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid---~ii~F~pl~~~~l~~il~~~l~~~~~~~~~~~~~l~i~~~a~~~L~ 905 (982)
..++|+|.+||. ..+.|.+-.. +..+....++..+.+.+...+....++++++..|.
T Consensus 290 -------------------~~~dpdL~~rfk~~~v~v~f~~~~~-d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI 349 (637)
T PRK13765 290 -------------------ENMHPALRSRIKGYGYEVYMRDTME-DTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEII 349 (637)
T ss_pred -------------------HhhhHHHHHHhccCeEEEEcccccC-CCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHH
Confidence 115788888885 3455554333 44555555666666666555445689999988888
Q ss_pred hc
Q 002012 906 IL 907 (982)
Q Consensus 906 ~~ 907 (982)
++
T Consensus 350 ~~ 351 (637)
T PRK13765 350 RE 351 (637)
T ss_pred HH
Confidence 75
No 352
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.13 E-value=1.1e-09 Score=121.18 Aligned_cols=210 Identities=20% Similarity=0.315 Sum_probs=129.4
Q ss_pred ccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHh--c--CCCCceEEEec----cccccc
Q 002012 664 RVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFL--F--NTENALVRIDM----SEYMEK 735 (982)
Q Consensus 664 ~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l--~--~~~~~~v~i~~----s~~~~~ 735 (982)
+++|+++++..+.+.++.+..|... .+. .++|+||||+|||++|++|++.+ | ..+.++.++.. +.+.+.
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~-~r~--il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~~sp~~e~ 128 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEE-RKQ--ILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGEESPMHED 128 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCC-CCc--EEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCCCCCCccC
Confidence 8999999999999999888766542 222 28999999999999999999988 1 11235555544 221110
Q ss_pred c----------------cc--------------ccc----cCC----------------------CCCc---------cc
Q 002012 736 H----------------SV--------------SRL----VGA----------------------PPGY---------VG 750 (982)
Q Consensus 736 ~----------------~~--------------~~l----~g~----------------------~~g~---------vg 750 (982)
. .+ ..+ -|. +|+. +|
T Consensus 129 Pl~l~p~~~r~~~~~~~~~~~~~~~~~l~p~c~~~l~~e~~gd~~~~~V~~~~~s~~~~~gi~~~~P~D~~~qdi~~L~G 208 (361)
T smart00763 129 PLHLFPDELREDLEDEYGIPRRRLEGDLSPWCRKRLDEEYGGDIEKFEVVRVNFSELRRIGIGKFEPKDENNQDISELTG 208 (361)
T ss_pred CcccCCHHHHHHHHHHhCCChhhcCCCCCHHHHHHHHHHhCCCcceEEEEEecCCeecceEEEEECCCCCCcccHHHHhc
Confidence 0 00 000 000 0000 00
Q ss_pred ---------cccCC----chhHHHhhCCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCCh
Q 002012 751 ---------YEEGG----QLTEVVRRRPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGS 817 (982)
Q Consensus 751 ---------~~~~~----~l~~~l~~~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~ 817 (982)
+...+ .+-+.+.++..||+-|+|+.|++.++++.||.++++|.+..+.+.....-+.+||++||...
T Consensus 209 ~vd~~k~~~~~~~dp~a~~~~G~l~~aNrGi~~f~Ei~K~~~~~l~~LL~~~qE~~v~~~~~~~~~~~d~liia~sNe~e 288 (361)
T smart00763 209 KVDIRKLEIYSESDPRAFSYDGALNRANRGILEFVEMFKADIKFLHPLLTATQEGNIKGTGGFAMIPIDGLIIAHSNESE 288 (361)
T ss_pred ccCHHHhcccCCCCCeEEeccCccccccCceEEEeehhcCCHHHHHHHhhhhhcceEecCCcccccccceEEEEeCCHHH
Confidence 00000 00123445666899999999999999999999999999976543322334568999999642
Q ss_pred HHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCC-CChhHHHHHHHHHHHHHHHHHHhCCCCccC
Q 002012 818 HYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQP-LDSKEISKIVEIQMNRVKDRLKQKKIDLHY 896 (982)
Q Consensus 818 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~p-l~~~~l~~il~~~l~~~~~~~~~~~~~l~i 896 (982)
-.... ......+|++||. +|.++. ++.++=.+|.+..+.. ......++
T Consensus 289 ~~~~~------------------------~~k~~eaf~dR~~-~i~vpY~l~~~~E~~Iy~k~~~~------s~~~~~~~ 337 (361)
T smart00763 289 WQRFK------------------------SNKKNEALLDRII-KVKVPYCLRVSEEAQIYEKLLRN------SDLTEAHI 337 (361)
T ss_pred Hhhhh------------------------ccccchhhhhceE-EEeCCCcCCHHHHHHHHHHHhcc------CcCccccc
Confidence 10000 0113568999995 666654 4446666777766653 11234678
Q ss_pred CHHHHHHHHhc
Q 002012 897 TKEAVTLLGIL 907 (982)
Q Consensus 897 ~~~a~~~L~~~ 907 (982)
.+.+++.++..
T Consensus 338 aP~~le~aa~~ 348 (361)
T smart00763 338 APHTLEMAALF 348 (361)
T ss_pred CchHHHHHHHH
Confidence 88777776653
No 353
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.13 E-value=5.3e-11 Score=121.52 Aligned_cols=134 Identities=22% Similarity=0.322 Sum_probs=72.4
Q ss_pred CCCcccchHHHHHHHHHhccCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEec----cccccccccc
Q 002012 268 LDPVIGRDDEIRRCIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDM----ASLVAGTCYR 343 (982)
Q Consensus 268 l~~liG~~~~i~~l~~~L~~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~----~~l~~~~~~~ 343 (982)
|.+|+||+...+.+.-+... ..|+||+||||||||++|+.+...+..-...+.+.-..++++.- ..+.....++
T Consensus 2 f~dI~GQe~aKrAL~iAAaG--~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~~~~~~~~~~~Pfr 79 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAAG--GHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGLGPDEGLIRQRPFR 79 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHHC--C--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---S---EEEE---EE
T ss_pred hhhhcCcHHHHHHHHHHHcC--CCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccCCCCCceecCCCcc
Confidence 67899998887777665553 56999999999999999999998775432222222222221110 0000000000
Q ss_pred cc-HHHHHHHHHH--------HHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCCC---------------e
Q 002012 344 GD-FEKRLKAVLK--------EVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRGE---------------L 399 (982)
Q Consensus 344 g~-~e~~l~~l~~--------~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g~---------------i 399 (982)
.- .......++. ++..++++ |||+||+..+. ..+.+.|++.++.|. +
T Consensus 80 ~phhs~s~~~liGgg~~~~PGeislAh~G-VLflDE~~ef~--------~~vld~Lr~ple~g~v~i~R~~~~~~~Pa~f 150 (206)
T PF01078_consen 80 APHHSASEAALIGGGRPPRPGEISLAHRG-VLFLDELNEFD--------RSVLDALRQPLEDGEVTISRAGGSVTYPARF 150 (206)
T ss_dssp EE-TT--HHHHHEEGGGEEE-CGGGGTTS-EEEECETTTS---------HHHHHHHHHHHHHSBEEEEETTEEEEEB--E
T ss_pred cCCCCcCHHHHhCCCcCCCcCHHHHhcCC-EEEechhhhcC--------HHHHHHHHHHHHCCeEEEEECCceEEEeccc
Confidence 00 0000111221 22233444 99999999875 788899999998774 4
Q ss_pred EEEEecCchhHhh
Q 002012 400 RCIGATTLNEYRN 412 (982)
Q Consensus 400 ~vI~at~~~~~~~ 412 (982)
.+|+|+|+-+...
T Consensus 151 ~lv~a~NPcpCG~ 163 (206)
T PF01078_consen 151 LLVAAMNPCPCGY 163 (206)
T ss_dssp EEEEEE-S-----
T ss_pred EEEEEeccccccc
Confidence 8999999877543
No 354
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=3.6e-10 Score=126.71 Aligned_cols=210 Identities=20% Similarity=0.250 Sum_probs=140.6
Q ss_pred HHHhhhcccccchHHHHHHHHHHHHHhc---CCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccc
Q 002012 657 LEEVLHKRVIGQDIAVKSVADAIRRSRA---GLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYM 733 (982)
Q Consensus 657 l~~~l~~~iiGq~~a~~~l~~~i~~~~~---g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~ 733 (982)
..+..+..+.|.+.+.+.+.+++..... ....-+.|...+|+.||||+|||.+++++|-+. +..|..+..+++.
T Consensus 147 ~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~---~atff~iSassLt 223 (428)
T KOG0740|consen 147 LRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATES---GATFFNISASSLT 223 (428)
T ss_pred CCcccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhh---cceEeeccHHHhh
Confidence 3445678899999999988887754322 011123444569999999999999999999986 5666666665553
Q ss_pred cccccccccCCCCCcccccc--CCchhHHHhhCCCeEEEEccccccCH-----------H-HHHHHHHhhhcCceecCCC
Q 002012 734 EKHSVSRLVGAPPGYVGYEE--GGQLTEVVRRRPYSVVLFDEIEKAHQ-----------D-VFNILLQLLDDGRITDSQG 799 (982)
Q Consensus 734 ~~~~~~~l~g~~~g~vg~~~--~~~l~~~l~~~~~~Vl~lDEidkl~~-----------~-~~~~Ll~~le~g~~~d~~g 799 (982)
.+ |+|..+ .+.++...+...++|+|+||||++-. . -.+.|++..- ...-++
T Consensus 224 sK------------~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~--~~s~~~- 288 (428)
T KOG0740|consen 224 SK------------YVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDG--KNSAPD- 288 (428)
T ss_pred hh------------ccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhcc--ccCCCC-
Confidence 22 444332 24567777888899999999998721 1 2334444431 111111
Q ss_pred cEEecccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHH
Q 002012 800 RTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQ 879 (982)
Q Consensus 800 ~~~~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~ 879 (982)
.++++|.|||.+.+ ++..++.||..++.++.++.+....++...
T Consensus 289 -----drvlvigaTN~P~e-------------------------------~Dea~~Rrf~kr~yiplPd~etr~~~~~~l 332 (428)
T KOG0740|consen 289 -----DRVLVIGATNRPWE-------------------------------LDEAARRRFVKRLYIPLPDYETRSLLWKQL 332 (428)
T ss_pred -----CeEEEEecCCCchH-------------------------------HHHHHHHHhhceeeecCCCHHHHHHHHHHH
Confidence 27899999998754 344566688778889999999999999888
Q ss_pred HHHHHHHHHhCCCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHH
Q 002012 880 MNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIA 931 (982)
Q Consensus 880 l~~~~~~~~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~l~~~la 931 (982)
|.. . .-.+++..++.|++. ...|+.-++..++......++.
T Consensus 333 l~~-------~--~~~l~~~d~~~l~~~--Tegysgsdi~~l~kea~~~p~r 373 (428)
T KOG0740|consen 333 LKE-------Q--PNGLSDLDISLLAKV--TEGYSGSDITALCKEAAMGPLR 373 (428)
T ss_pred HHh-------C--CCCccHHHHHHHHHH--hcCcccccHHHHHHHhhcCchh
Confidence 876 2 244666667777764 2335556788888876666653
No 355
>PHA02244 ATPase-like protein
Probab=99.12 E-value=4e-10 Score=124.42 Aligned_cols=138 Identities=21% Similarity=0.286 Sum_probs=91.1
Q ss_pred cccchHHHH----HHHHHhccCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecc----cccccc-c
Q 002012 271 VIGRDDEIR----RCIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMA----SLVAGT-C 341 (982)
Q Consensus 271 liG~~~~i~----~l~~~L~~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~----~l~~~~-~ 341 (982)
.+|....+. ++..++. ...+++|+||||||||++|+++|..+ +.+++.++.. .+. |. .
T Consensus 98 ~ig~sp~~~~~~~ri~r~l~--~~~PVLL~GppGtGKTtLA~aLA~~l----------g~pfv~In~l~d~~~L~-G~i~ 164 (383)
T PHA02244 98 KIASNPTFHYETADIAKIVN--ANIPVFLKGGAGSGKNHIAEQIAEAL----------DLDFYFMNAIMDEFELK-GFID 164 (383)
T ss_pred ccCCCHHHHHHHHHHHHHHh--cCCCEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEecChHHHhhc-cccc
Confidence 566555443 3333333 45589999999999999999999987 7778777621 111 10 0
Q ss_pred ccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhc-------------CCCeEEEEecCch
Q 002012 342 YRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLG-------------RGELRCIGATTLN 408 (982)
Q Consensus 342 ~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le-------------~g~i~vI~at~~~ 408 (982)
..|.+. ...++..+. .+.+|||||++.+. .+++..|..+++ ..++++|+|+|+.
T Consensus 165 ~~g~~~--dgpLl~A~~---~GgvLiLDEId~a~--------p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~ 231 (383)
T PHA02244 165 ANGKFH--ETPFYEAFK---KGGLFFIDEIDASI--------PEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTL 231 (383)
T ss_pred cccccc--chHHHHHhh---cCCEEEEeCcCcCC--------HHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCC
Confidence 111111 123333332 34499999999875 566667777774 2477999999984
Q ss_pred h------HhhhhhcChHHHhccceEEecCCCH
Q 002012 409 E------YRNYIEKDPALERRFQQVFCDQPSV 434 (982)
Q Consensus 409 ~------~~~~~~~d~al~rRf~~i~i~~Ps~ 434 (982)
. |.....+++++++||..|.+..|+.
T Consensus 232 ~~G~~~~y~G~k~L~~AllDRFv~I~~dyp~~ 263 (383)
T PHA02244 232 GKGADHIYVARNKIDGATLDRFAPIEFDYDEK 263 (383)
T ss_pred ccCcccccCCCcccCHHHHhhcEEeeCCCCcH
Confidence 2 2123478999999999999999973
No 356
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.12 E-value=4.6e-10 Score=109.98 Aligned_cols=150 Identities=26% Similarity=0.379 Sum_probs=97.7
Q ss_pred cchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccccccccCCCC
Q 002012 667 GQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRLVGAPP 746 (982)
Q Consensus 667 Gq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l~g~~~ 746 (982)
|++..+..+...+... +..+++++||||||||++++.+++.+...+.+++.+++.+...........+..
T Consensus 2 ~~~~~~~~i~~~~~~~---------~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~- 71 (151)
T cd00009 2 GQEEAIEALREALELP---------PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHF- 71 (151)
T ss_pred chHHHHHHHHHHHhCC---------CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhh-
Confidence 5666666666655421 223599999999999999999999986556788888887764332211111100
Q ss_pred CccccccCCchhHHHhhCCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCChHHHHHhhhh
Q 002012 747 GYVGYEEGGQLTEVVRRRPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQS 826 (982)
Q Consensus 747 g~vg~~~~~~l~~~l~~~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~i~~~~~~ 826 (982)
..............++|+|||++.+.+.....+++.++...... ....++.+|+++|....
T Consensus 72 ------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~ii~~~~~~~~-------- 132 (151)
T cd00009 72 ------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLR-----IDRENVRVIGATNRPLL-------- 132 (151)
T ss_pred ------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCcee-----ccCCCeEEEEecCcccc--------
Confidence 00011122234456899999999998888889998888643210 11246889999886542
Q ss_pred cccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCC
Q 002012 827 VQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQP 866 (982)
Q Consensus 827 ~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~p 866 (982)
..+.+.+.+|++..+.|+|
T Consensus 133 ---------------------~~~~~~~~~r~~~~i~~~~ 151 (151)
T cd00009 133 ---------------------GDLDRALYDRLDIRIVIPL 151 (151)
T ss_pred ---------------------CCcChhHHhhhccEeecCC
Confidence 1156788899987777765
No 357
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=1.3e-10 Score=122.56 Aligned_cols=143 Identities=28% Similarity=0.416 Sum_probs=100.1
Q ss_pred EEeecCCCCchHHHHHHHHHHhc-CC-----CCceEEEeccccccccccccccCCCCCccccccCCchhHHHhhCCC-eE
Q 002012 696 FMFMGPTGVGKTELGKALADFLF-NT-----ENALVRIDMSEYMEKHSVSRLVGAPPGYVGYEEGGQLTEVVRRRPY-SV 768 (982)
Q Consensus 696 lLf~Gp~GtGKT~lA~~la~~l~-~~-----~~~~v~i~~s~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~~~~-~V 768 (982)
+|++||||||||+++++||+.|- .. ...++.+|+..+.. +.|+..-..+. ..-+++.+.+..... -.
T Consensus 180 iLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFS-----KWFsESgKlV~-kmF~kI~ELv~d~~~lVf 253 (423)
T KOG0744|consen 180 ILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFS-----KWFSESGKLVA-KMFQKIQELVEDRGNLVF 253 (423)
T ss_pred EEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHH-----HHHhhhhhHHH-HHHHHHHHHHhCCCcEEE
Confidence 89999999999999999999881 11 23466777766543 33332211111 011223344444222 36
Q ss_pred EEEccccccCH---------------HHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCChHHHHHhhhhcccchHH
Q 002012 769 VLFDEIEKAHQ---------------DVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEA 833 (982)
Q Consensus 769 l~lDEidkl~~---------------~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~ 833 (982)
++|||+|.+.. .+.|+||.-||.-+ .+.|++|++|||....
T Consensus 254 vLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK---------~~~NvliL~TSNl~~s--------------- 309 (423)
T KOG0744|consen 254 VLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLK---------RYPNVLILATSNLTDS--------------- 309 (423)
T ss_pred EEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhc---------cCCCEEEEeccchHHH---------------
Confidence 78999998742 28999999998532 3468999999997432
Q ss_pred HHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHHHHH
Q 002012 834 VYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVK 884 (982)
Q Consensus 834 ~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~~ 884 (982)
++.+|++|-|.+....|++...+.+|+...+..+.
T Consensus 310 ----------------iD~AfVDRADi~~yVG~Pt~~ai~~IlkscieEL~ 344 (423)
T KOG0744|consen 310 ----------------IDVAFVDRADIVFYVGPPTAEAIYEILKSCIEELI 344 (423)
T ss_pred ----------------HHHHhhhHhhheeecCCccHHHHHHHHHHHHHHHH
Confidence 66799999999999999999999999999988765
No 358
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.11 E-value=7.6e-10 Score=108.42 Aligned_cols=144 Identities=25% Similarity=0.393 Sum_probs=91.9
Q ss_pred ccchHHHHHHHHHhccCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccccccccccHHHHHH
Q 002012 272 IGRDDEIRRCIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGTCYRGDFEKRLK 351 (982)
Q Consensus 272 iG~~~~i~~l~~~L~~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~~~~g~~e~~l~ 351 (982)
+|++..+..+...+......+++++||||+|||++++.+++.+.. .+.+++.+++........+.........
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 73 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFR-------PGAPFLYLNASDLLEGLVVAELFGHFLV 73 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhc-------CCCCeEEEehhhhhhhhHHHHHhhhhhH
Confidence 467888888888887767788999999999999999999998842 2678888887665533211111110001
Q ss_pred HHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhc----CCCeEEEEecCchhHhhhhhcChHHHhccc-e
Q 002012 352 AVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLG----RGELRCIGATTLNEYRNYIEKDPALERRFQ-Q 426 (982)
Q Consensus 352 ~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le----~g~i~vI~at~~~~~~~~~~~d~al~rRf~-~ 426 (982)
...........+.+|+|||++.+.... .......+..... ..++.+|++++.... ...++.+.+||. .
T Consensus 74 ~~~~~~~~~~~~~~lilDe~~~~~~~~----~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~---~~~~~~~~~r~~~~ 146 (151)
T cd00009 74 RLLFELAEKAKPGVLFIDEIDSLSRGA----QNALLRVLETLNDLRIDRENVRVIGATNRPLL---GDLDRALYDRLDIR 146 (151)
T ss_pred hHHHHhhccCCCeEEEEeChhhhhHHH----HHHHHHHHHhcCceeccCCCeEEEEecCcccc---CCcChhHHhhhccE
Confidence 111112222456799999999873110 1222333333332 368899999988762 356788999994 5
Q ss_pred EEe
Q 002012 427 VFC 429 (982)
Q Consensus 427 i~i 429 (982)
+.+
T Consensus 147 i~~ 149 (151)
T cd00009 147 IVI 149 (151)
T ss_pred eec
Confidence 444
No 359
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.11 E-value=1.8e-09 Score=133.43 Aligned_cols=187 Identities=20% Similarity=0.313 Sum_probs=125.5
Q ss_pred CCCCCcccchHHHHHHHHHhcc--CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccccc---
Q 002012 266 GKLDPVIGRDDEIRRCIQILSR--RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGT--- 340 (982)
Q Consensus 266 ~~l~~liG~~~~i~~l~~~L~~--~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~--- 340 (982)
..+++++|++..++.+++.+.+ ....+++|+||+|||||++|++|+..... .+.+++.+||..+..+.
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r-------~~~~~v~i~c~~~~~~~~~~ 445 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGR-------NNRRMVKMNCAAMPAGLLES 445 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCC-------CCCCeEEEecccCChhHhhh
Confidence 4678999999999888765543 45668999999999999999999986532 36799999998764320
Q ss_pred c----ccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCC-------------CeEEEE
Q 002012 341 C----YRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRG-------------ELRCIG 403 (982)
Q Consensus 341 ~----~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g-------------~i~vI~ 403 (982)
. ..|.+..........+...++ .+||||||+.+. .+++..|..+++.+ ++++|+
T Consensus 446 ~lfg~~~~~~~g~~~~~~g~le~a~~-GtL~Ldei~~L~--------~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~ 516 (686)
T PRK15429 446 DLFGHERGAFTGASAQRIGRFELADK-SSLFLDEVGDMP--------LELQPKLLRVLQEQEFERLGSNKIIQTDVRLIA 516 (686)
T ss_pred hhcCcccccccccccchhhHHHhcCC-CeEEEechhhCC--------HHHHHHHHHHHHhCCEEeCCCCCcccceEEEEE
Confidence 0 001111100111112222233 489999999986 66777787777543 568999
Q ss_pred ecCchhHh--hhhhcChHHHhccceEEecCCC----HHHHHHHHHHHHHHHhhhcCC---ccChHHHHHHHHHh
Q 002012 404 ATTLNEYR--NYIEKDPALERRFQQVFCDQPS----VENTISILRGLRERYELHHGV---KISDSALVSAAVLA 468 (982)
Q Consensus 404 at~~~~~~--~~~~~d~al~rRf~~i~i~~Ps----~~e~~~IL~~~~~~~~~~~~v---~i~~~~l~~~~~~s 468 (982)
+|+.+... ..-.+.+.|..|+..+.|..|+ .+|+..+++.+..++...++. .++++++..+..+.
T Consensus 517 ~t~~~l~~~~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~L~~y~ 590 (686)
T PRK15429 517 ATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSNME 590 (686)
T ss_pred eCCCCHHHHHHcCcccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCC
Confidence 99876421 1123456677788777777776 456666777777777665442 47899998887773
No 360
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.11 E-value=1.1e-09 Score=127.51 Aligned_cols=176 Identities=16% Similarity=0.331 Sum_probs=120.2
Q ss_pred eEEeecCCCCchHHHHHHHHHHhc--CCCCceEEEeccccccccccccccCCCCCccccccCCchhHHHhh-CCCeEEEE
Q 002012 695 SFMFMGPTGVGKTELGKALADFLF--NTENALVRIDMSEYMEKHSVSRLVGAPPGYVGYEEGGQLTEVVRR-RPYSVVLF 771 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~--~~~~~~v~i~~s~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~-~~~~Vl~l 771 (982)
+++|+|++|+|||++++++++.+. ..+..++++++.++..... ..++... +.+.+.... ....||+|
T Consensus 143 pl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~--~~l~~~~--------~~~~~~~~~~~~~dvLiI 212 (450)
T PRK14087 143 PLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAV--DILQKTH--------KEIEQFKNEICQNDVLII 212 (450)
T ss_pred ceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHH--HHHHHhh--------hHHHHHHHHhccCCEEEE
Confidence 499999999999999999999774 2346677788777643211 0011100 112222111 23459999
Q ss_pred ccccccC--HHHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhh
Q 002012 772 DEIEKAH--QDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQT 849 (982)
Q Consensus 772 DEidkl~--~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 849 (982)
||++.+. ...++.|+.++..-. + .+..+|+|+|..+..+ ..
T Consensus 213 DDiq~l~~k~~~~e~lf~l~N~~~--~--------~~k~iIltsd~~P~~l---------------------------~~ 255 (450)
T PRK14087 213 DDVQFLSYKEKTNEIFFTIFNNFI--E--------NDKQLFFSSDKSPELL---------------------------NG 255 (450)
T ss_pred eccccccCCHHHHHHHHHHHHHHH--H--------cCCcEEEECCCCHHHH---------------------------hh
Confidence 9999886 567788887776411 1 1235788988765422 12
Q ss_pred cChHHHhccc--cccccCCCChhHHHHHHHHHHHHHHHHHHhCCCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHHHHH
Q 002012 850 FRPEFLNRID--EYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVE 927 (982)
Q Consensus 850 f~p~ll~Rid--~ii~F~pl~~~~l~~il~~~l~~~~~~~~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~l~ 927 (982)
+.+.+.+||. .++.+.|++.+++..|++..++. .+..+.++++++++|+.. ..+ .+|.|..++.++..
T Consensus 256 l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~-------~gl~~~l~~evl~~Ia~~-~~g--d~R~L~gaL~~l~~ 325 (450)
T PRK14087 256 FDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKN-------QNIKQEVTEEAINFISNY-YSD--DVRKIKGSVSRLNF 325 (450)
T ss_pred ccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHh-------cCCCCCCCHHHHHHHHHc-cCC--CHHHHHHHHHHHHH
Confidence 6678888884 47899999999999999998875 344457999999999986 332 46888888887653
No 361
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.10 E-value=1.6e-09 Score=108.96 Aligned_cols=143 Identities=17% Similarity=0.198 Sum_probs=96.5
Q ss_pred cchHHHHHHHHHhccCCCCC-cEEeCCCCCcHHHHHHHHHHHhhcCCCCCC-------------CCCCeEEEEecccccc
Q 002012 273 GRDDEIRRCIQILSRRTKNN-PVIIGEPGVGKTAIAEGLAQRIVRGDVPET-------------LQNRKLISLDMASLVA 338 (982)
Q Consensus 273 G~~~~i~~l~~~L~~~~~~~-iLL~GppGvGKT~la~~la~~l~~~~~p~~-------------l~~~~v~~l~~~~l~~ 338 (982)
|++..++.+.+.+.....+| +||+||+|+||+++|..+|+.+.+...... .....++.++...-.
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~- 79 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKK- 79 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSS-
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEeccccc-
Confidence 78889999999988887777 589999999999999999999977543311 224445555432210
Q ss_pred cccccccHHHHHHHHHHHHHhc---CCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcC--CCeEEEEecCchhHhhh
Q 002012 339 GTCYRGDFEKRLKAVLKEVTKS---NGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGR--GELRCIGATTLNEYRNY 413 (982)
Q Consensus 339 ~~~~~g~~e~~l~~l~~~~~~~---~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~--g~i~vI~at~~~~~~~~ 413 (982)
..-..+.++.+...+... ++.-|++|||+|.|. .+++|.|+..||. ..+.+|.+|+...
T Consensus 80 ----~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~--------~~a~NaLLK~LEepp~~~~fiL~t~~~~---- 143 (162)
T PF13177_consen 80 ----KSIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLT--------EEAQNALLKTLEEPPENTYFILITNNPS---- 143 (162)
T ss_dssp ----SSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS---------HHHHHHHHHHHHSTTTTEEEEEEES-GG----
T ss_pred ----chhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhh--------HHHHHHHHHHhcCCCCCEEEEEEECChH----
Confidence 011123344555544321 345699999999997 7888999999985 4889999998887
Q ss_pred hhcChHHHhccceEEecCCC
Q 002012 414 IEKDPALERRFQQVFCDQPS 433 (982)
Q Consensus 414 ~~~d~al~rRf~~i~i~~Ps 433 (982)
.+-|.++|||..+.+.+.|
T Consensus 144 -~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 144 -KILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp -GS-HHHHTTSEEEEE----
T ss_pred -HChHHHHhhceEEecCCCC
Confidence 7899999999999887654
No 362
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.10 E-value=1.2e-09 Score=128.83 Aligned_cols=179 Identities=17% Similarity=0.233 Sum_probs=123.1
Q ss_pred CCCCCcccchHHHHHHHHHhcc--CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccccc---
Q 002012 266 GKLDPVIGRDDEIRRCIQILSR--RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGT--- 340 (982)
Q Consensus 266 ~~l~~liG~~~~i~~l~~~L~~--~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~--- 340 (982)
..|++++|.+..++++.+.+.+ ....+++|+|++||||+.+|++|...-.. .+.+++.+||+.+....
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r-------~~~pfv~inC~~l~e~lles 281 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLSGR-------RDFPFVAINCGAIAESLLEA 281 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHhcCc-------CCCCEEEeccccCChhHHHH
Confidence 4688899999999888887643 56678999999999999999999876422 36799999998764210
Q ss_pred cc----cccHHHH----HHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCCC-------------e
Q 002012 341 CY----RGDFEKR----LKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRGE-------------L 399 (982)
Q Consensus 341 ~~----~g~~e~~----l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g~-------------i 399 (982)
.. .|.+... -..+|+. .++ ..||||||+.|. .+.+..|+.+++.+. +
T Consensus 282 eLFG~~~gaftga~~~~~~Gl~e~---A~g-GTLfLdeI~~Lp--------~~~Q~~Ll~~L~~~~~~r~g~~~~~~~dv 349 (526)
T TIGR02329 282 ELFGYEEGAFTGARRGGRTGLIEA---AHR-GTLFLDEIGEMP--------LPLQTRLLRVLEEREVVRVGGTEPVPVDV 349 (526)
T ss_pred HhcCCcccccccccccccccchhh---cCC-ceEEecChHhCC--------HHHHHHHHHHHhcCcEEecCCCceeeecc
Confidence 00 0111110 1122322 233 379999999996 677788888886543 4
Q ss_pred EEEEecCchhHhh--hhhcChHHHhccceEEecCCC----HHHHHHHHHHHHHHHhhhcCCccChHHHHH
Q 002012 400 RCIGATTLNEYRN--YIEKDPALERRFQQVFCDQPS----VENTISILRGLRERYELHHGVKISDSALVS 463 (982)
Q Consensus 400 ~vI~at~~~~~~~--~~~~d~al~rRf~~i~i~~Ps----~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~ 463 (982)
++|++|+.+.-.. .-.+.+.|..|+..+.+..|+ .+|+..+++.+..++...+++.++++++..
T Consensus 350 RiIaat~~~l~~~v~~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~ 419 (526)
T TIGR02329 350 RVVAATHCALTTAVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQV 419 (526)
T ss_pred eEEeccCCCHHHHhhhcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 8999998764211 112345566688766666665 566777778888887766777888888776
No 363
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.10 E-value=1.6e-09 Score=127.52 Aligned_cols=172 Identities=16% Similarity=0.290 Sum_probs=118.1
Q ss_pred eEEeecCCCCchHHHHHHHHHHhcC--CCCceEEEeccccccccccccccCCCCCccccccCCchhHHHhhCCCeEEEEc
Q 002012 695 SFMFMGPTGVGKTELGKALADFLFN--TENALVRIDMSEYMEKHSVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFD 772 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~~--~~~~~v~i~~s~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~~~~~Vl~lD 772 (982)
.++|+|++|+|||+|+++|++.+.. .+..++++++.++....... +.. + ....+.+.++. .+||+||
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~a-l~~------~--~~~~f~~~y~~--~DLLlID 384 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINS-IRD------G--KGDSFRRRYRE--MDILLVD 384 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHH-HHh------c--cHHHHHHHhhc--CCEEEEe
Confidence 3899999999999999999998743 35677888887765321100 000 0 00113333343 3699999
Q ss_pred cccccCH--HHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhc
Q 002012 773 EIEKAHQ--DVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTF 850 (982)
Q Consensus 773 Eidkl~~--~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 850 (982)
||+.+.. ..++.|+.+++.-. + .+.-||+|||.....+. .+
T Consensus 385 DIq~l~gke~tqeeLF~l~N~l~--e--------~gk~IIITSd~~P~eL~---------------------------~l 427 (617)
T PRK14086 385 DIQFLEDKESTQEEFFHTFNTLH--N--------ANKQIVLSSDRPPKQLV---------------------------TL 427 (617)
T ss_pred hhccccCCHHHHHHHHHHHHHHH--h--------cCCCEEEecCCChHhhh---------------------------hc
Confidence 9998843 35667777766411 1 12346778887665332 15
Q ss_pred ChHHHhcccc--ccccCCCChhHHHHHHHHHHHHHHHHHHhCCCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHHHH
Q 002012 851 RPEFLNRIDE--YIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLV 926 (982)
Q Consensus 851 ~p~ll~Rid~--ii~F~pl~~~~l~~il~~~l~~~~~~~~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~l 926 (982)
.+.|.+||.. ++.+.+++.+....|+...+.. .+ +.++++++++|+.+ +..+ .|.|..++.++.
T Consensus 428 ~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~-------r~--l~l~~eVi~yLa~r-~~rn--vR~LegaL~rL~ 493 (617)
T PRK14086 428 EDRLRNRFEWGLITDVQPPELETRIAILRKKAVQ-------EQ--LNAPPEVLEFIASR-ISRN--IRELEGALIRVT 493 (617)
T ss_pred cHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHh-------cC--CCCCHHHHHHHHHh-ccCC--HHHHHHHHHHHH
Confidence 6788899844 7889999999999999877654 34 88999999999987 4443 589988888864
No 364
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=99.09 E-value=4e-09 Score=116.61 Aligned_cols=182 Identities=16% Similarity=0.166 Sum_probs=118.1
Q ss_pred hHHHHHHHHHhccCCCCC-cEEeCCCCCcHHHHHHHHHHHhhcCCCCCC-----------CCCCeEEEEecccccccccc
Q 002012 275 DDEIRRCIQILSRRTKNN-PVIIGEPGVGKTAIAEGLAQRIVRGDVPET-----------LQNRKLISLDMASLVAGTCY 342 (982)
Q Consensus 275 ~~~i~~l~~~L~~~~~~~-iLL~GppGvGKT~la~~la~~l~~~~~p~~-----------l~~~~v~~l~~~~l~~~~~~ 342 (982)
+...+.+...+.+...+| +||+||+|+||+++|..+|+.+.+...... .....++.+....-..+.+.
T Consensus 10 ~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~ 89 (319)
T PRK08769 10 QRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKL 89 (319)
T ss_pred HHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccc
Confidence 345677777777766667 778899999999999999999987542110 01112233311000001000
Q ss_pred -cccHHHHHHHHHHHHHhc---CCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcC--CCeEEEEecCchhHhhhhhc
Q 002012 343 -RGDFEKRLKAVLKEVTKS---NGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGR--GELRCIGATTLNEYRNYIEK 416 (982)
Q Consensus 343 -~g~~e~~l~~l~~~~~~~---~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~--g~i~vI~at~~~~~~~~~~~ 416 (982)
..-..+.++++.+.+... ++.-|++||++|.|. ..++|.|+..||. +++.+|.+|+..+ .+
T Consensus 90 ~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~--------~~AaNaLLKtLEEPp~~~~fiL~~~~~~-----~l 156 (319)
T PRK08769 90 RTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAIN--------RAACNALLKTLEEPSPGRYLWLISAQPA-----RL 156 (319)
T ss_pred cccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhC--------HHHHHHHHHHhhCCCCCCeEEEEECChh-----hC
Confidence 011234455665555432 344699999999997 6778888888884 4788888888877 68
Q ss_pred ChHHHhccceEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCCcchhhHHH
Q 002012 417 DPALERRFQQVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLPDKAIDLV 485 (982)
Q Consensus 417 d~al~rRf~~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~p~~a~~ll 485 (982)
-|.++|||+.+.|..|+.++....|.. .+ +++.....++.+++ ..|..|..++
T Consensus 157 LpTIrSRCq~i~~~~~~~~~~~~~L~~--------~~--~~~~~a~~~~~l~~------G~p~~A~~~~ 209 (319)
T PRK08769 157 PATIRSRCQRLEFKLPPAHEALAWLLA--------QG--VSERAAQEALDAAR------GHPGLAAQWL 209 (319)
T ss_pred chHHHhhheEeeCCCcCHHHHHHHHHH--------cC--CChHHHHHHHHHcC------CCHHHHHHHh
Confidence 899999999999999999887777752 12 34444445566654 3355565554
No 365
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.09 E-value=2.4e-09 Score=119.49 Aligned_cols=167 Identities=19% Similarity=0.251 Sum_probs=110.2
Q ss_pred CCCCC-cEEeCCCCCcHHHHHHHHHHHhhcCCCCC--------------CCCCCeEEEEecccccccccccccHHHHHHH
Q 002012 288 RTKNN-PVIIGEPGVGKTAIAEGLAQRIVRGDVPE--------------TLQNRKLISLDMASLVAGTCYRGDFEKRLKA 352 (982)
Q Consensus 288 ~~~~~-iLL~GppGvGKT~la~~la~~l~~~~~p~--------------~l~~~~v~~l~~~~l~~~~~~~g~~e~~l~~ 352 (982)
+...| +||+||+|+|||++|+.+|+.+.+..-.. ......++.+....- + ..-..+.+++
T Consensus 19 ~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~--~---~~i~id~iR~ 93 (328)
T PRK05707 19 GRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA--D---KTIKVDQVRE 93 (328)
T ss_pred CCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC--C---CCCCHHHHHH
Confidence 33344 77899999999999999999997643110 001123333332100 0 0112344556
Q ss_pred HHHHHHhc---CCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcC--CCeEEEEecCchhHhhhhhcChHHHhccceE
Q 002012 353 VLKEVTKS---NGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGR--GELRCIGATTLNEYRNYIEKDPALERRFQQV 427 (982)
Q Consensus 353 l~~~~~~~---~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~--g~i~vI~at~~~~~~~~~~~d~al~rRf~~i 427 (982)
+.+.+... ++.-|++||++|.|. .+++|.|+..+|. +++.+|.+|+... .+.|.++|||+.+
T Consensus 94 l~~~~~~~~~~~~~kv~iI~~a~~m~--------~~aaNaLLK~LEEPp~~~~fiL~t~~~~-----~ll~TI~SRc~~~ 160 (328)
T PRK05707 94 LVSFVVQTAQLGGRKVVLIEPAEAMN--------RNAANALLKSLEEPSGDTVLLLISHQPS-----RLLPTIKSRCQQQ 160 (328)
T ss_pred HHHHHhhccccCCCeEEEECChhhCC--------HHHHHHHHHHHhCCCCCeEEEEEECChh-----hCcHHHHhhceee
Confidence 66555432 345588999999997 6778889889985 6889999998887 6899999999999
Q ss_pred EecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCCcchhhHHHH
Q 002012 428 FCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLPDKAIDLVD 486 (982)
Q Consensus 428 ~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~p~~a~~lld 486 (982)
.|.+|+.++....|.... ...+++....++.++. ..|.+|..+++
T Consensus 161 ~~~~~~~~~~~~~L~~~~--------~~~~~~~~~~~l~la~------Gsp~~A~~l~~ 205 (328)
T PRK05707 161 ACPLPSNEESLQWLQQAL--------PESDERERIELLTLAG------GSPLRALQLHE 205 (328)
T ss_pred eCCCcCHHHHHHHHHHhc--------ccCChHHHHHHHHHcC------CCHHHHHHHHC
Confidence 999999998877775321 1234444455556654 33566666543
No 366
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.09 E-value=9.7e-10 Score=127.96 Aligned_cols=173 Identities=17% Similarity=0.331 Sum_probs=113.2
Q ss_pred eEEeecCCCCchHHHHHHHHHHhcCC--CCceEEEeccccccccccccccCCCCCccccccCCchhHHHhhCCCeEEEEc
Q 002012 695 SFMFMGPTGVGKTELGKALADFLFNT--ENALVRIDMSEYMEKHSVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFD 772 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~~~--~~~~v~i~~s~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~~~~~Vl~lD 772 (982)
+++|+||+|+|||++++++++.+... +..++++++.++.... ... +.. + ....+.+.++ ....||+||
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~-~~~-~~~--~-----~~~~f~~~~~-~~~dvLlID 201 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDL-VDS-MKE--G-----KLNEFREKYR-KKVDVLLID 201 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHH-HHH-Hhc--c-----cHHHHHHHHH-hcCCEEEEe
Confidence 49999999999999999999987432 3567788877754321 000 000 0 0011222222 235699999
Q ss_pred cccccC--HHHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhc
Q 002012 773 EIEKAH--QDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTF 850 (982)
Q Consensus 773 Eidkl~--~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 850 (982)
|++.+. ...+..|+.++..- .+ .+..+|+||+..+..+.. +
T Consensus 202 Di~~l~~~~~~q~elf~~~n~l--~~--------~~k~iIitsd~~p~~l~~---------------------------l 244 (440)
T PRK14088 202 DVQFLIGKTGVQTELFHTFNEL--HD--------SGKQIVICSDREPQKLSE---------------------------F 244 (440)
T ss_pred chhhhcCcHHHHHHHHHHHHHH--HH--------cCCeEEEECCCCHHHHHH---------------------------H
Confidence 999773 33556666665431 01 123577777755543211 4
Q ss_pred ChHHHhccc--cccccCCCChhHHHHHHHHHHHHHHHHHHhCCCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHHHH
Q 002012 851 RPEFLNRID--EYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLV 926 (982)
Q Consensus 851 ~p~ll~Rid--~ii~F~pl~~~~l~~il~~~l~~~~~~~~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~l 926 (982)
.+.+.+||. .++.+.|++.+++..|++..+.. .+ +.++++++++|+.+ ..+ ++|.|..++.++.
T Consensus 245 ~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~-------~~--~~l~~ev~~~Ia~~-~~~--~~R~L~g~l~~l~ 310 (440)
T PRK14088 245 QDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEI-------EH--GELPEEVLNFVAEN-VDD--NLRRLRGAIIKLL 310 (440)
T ss_pred HHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHh-------cC--CCCCHHHHHHHHhc-ccc--CHHHHHHHHHHHH
Confidence 567778883 37889999999999999877653 33 77999999999987 333 4589999988864
No 367
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.09 E-value=1.8e-09 Score=128.69 Aligned_cols=186 Identities=20% Similarity=0.285 Sum_probs=126.9
Q ss_pred CCCCcccchHHHHHHHHHhcc--CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccccc---c
Q 002012 267 KLDPVIGRDDEIRRCIQILSR--RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGT---C 341 (982)
Q Consensus 267 ~l~~liG~~~~i~~l~~~L~~--~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~---~ 341 (982)
..+.+||++..++++.+.+.+ ....+++|+|++|||||++|++|...... .+.+++.+||+.+.... .
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r-------~~~p~v~v~c~~~~~~~~e~~ 257 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPR-------ADKPLVYLNCAALPESLAESE 257 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCCc-------CCCCeEEEEcccCChHHHHHH
Confidence 467899999999888887655 46678999999999999999999987532 26789999998764210 0
Q ss_pred c----cccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCC-------------CeEEEEe
Q 002012 342 Y----RGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRG-------------ELRCIGA 404 (982)
Q Consensus 342 ~----~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g-------------~i~vI~a 404 (982)
. .|.+..........+...++ ..||||||+.|. .+++..|..+++.+ ++++|++
T Consensus 258 lfG~~~g~~~ga~~~~~g~~~~a~g-GtL~ldeI~~L~--------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~ 328 (509)
T PRK05022 258 LFGHVKGAFTGAISNRSGKFELADG-GTLFLDEIGELP--------LALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAA 328 (509)
T ss_pred hcCccccccCCCcccCCcchhhcCC-CEEEecChhhCC--------HHHHHHHHHHHhcCCEeeCCCCcceecceEEEEe
Confidence 0 00000000000001222233 379999999996 66777888888654 4689999
Q ss_pred cCchhHh--hhhhcChHHHhccceEEecCCC----HHHHHHHHHHHHHHHhhhcC---CccChHHHHHHHHHh
Q 002012 405 TTLNEYR--NYIEKDPALERRFQQVFCDQPS----VENTISILRGLRERYELHHG---VKISDSALVSAAVLA 468 (982)
Q Consensus 405 t~~~~~~--~~~~~d~al~rRf~~i~i~~Ps----~~e~~~IL~~~~~~~~~~~~---v~i~~~~l~~~~~~s 468 (982)
|+.+.-. ..-.+.+.|..|+..+.|..|+ .+|+..+++.+..++...++ +.++++++..+..+.
T Consensus 329 t~~~l~~~~~~~~f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y~ 401 (509)
T PRK05022 329 TNRDLREEVRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLAYD 401 (509)
T ss_pred cCCCHHHHHHcCCccHHHHhcccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCC
Confidence 9886421 1113567788888766677765 45666777778777765444 679999999988874
No 368
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.08 E-value=1.7e-09 Score=127.56 Aligned_cols=185 Identities=17% Similarity=0.243 Sum_probs=120.7
Q ss_pred CCCCCcccchHHHHHHHHHhcc--CCCCCcEEeCCCCCcHHHHHHHHHHHhh-cCCCCCCCCCCeEEEEecccccccc--
Q 002012 266 GKLDPVIGRDDEIRRCIQILSR--RTKNNPVIIGEPGVGKTAIAEGLAQRIV-RGDVPETLQNRKLISLDMASLVAGT-- 340 (982)
Q Consensus 266 ~~l~~liG~~~~i~~l~~~L~~--~~~~~iLL~GppGvGKT~la~~la~~l~-~~~~p~~l~~~~v~~l~~~~l~~~~-- 340 (982)
..|++++|.+..++++.+.+.+ ....+++|+|++||||+.+|++|...+. ..+....-.+.+++.+||+.+....
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e~lle 295 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLE 295 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCChhhHH
Confidence 3688899999999888887643 5667899999999999999999998621 1111012247799999998765210
Q ss_pred -cc----cccHHHH----HHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCC-------------C
Q 002012 341 -CY----RGDFEKR----LKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRG-------------E 398 (982)
Q Consensus 341 -~~----~g~~e~~----l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g-------------~ 398 (982)
.. .|.+... -..+|+. .++ ..||||||+.|. ...+..|+.+++.+ +
T Consensus 296 seLFG~~~gaftga~~~~~~Gl~e~---A~g-GTLfLdeI~~Lp--------~~~Q~kLl~~L~e~~~~r~G~~~~~~~d 363 (538)
T PRK15424 296 AELFGYEEGAFTGSRRGGRAGLFEI---AHG-GTLFLDEIGEMP--------LPLQTRLLRVLEEKEVTRVGGHQPVPVD 363 (538)
T ss_pred HHhcCCccccccCccccccCCchhc---cCC-CEEEEcChHhCC--------HHHHHHHHhhhhcCeEEecCCCceeccc
Confidence 00 0111110 0122322 233 379999999996 66778888888754 3
Q ss_pred eEEEEecCchhHhh--hhhcChHHHhccceEEecCCC----HHHHHHHHHHHHHHHhhhcCCccChHHHH
Q 002012 399 LRCIGATTLNEYRN--YIEKDPALERRFQQVFCDQPS----VENTISILRGLRERYELHHGVKISDSALV 462 (982)
Q Consensus 399 i~vI~at~~~~~~~--~~~~d~al~rRf~~i~i~~Ps----~~e~~~IL~~~~~~~~~~~~v~i~~~~l~ 462 (982)
+++|++|+.+.-.. .-...+.|..|+..+.+..|+ .+|+..+++.++.++....+..++++++.
T Consensus 364 vRiIaat~~~L~~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~ 433 (538)
T PRK15424 364 VRVISATHCDLEEDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSAPFSAALRQ 433 (538)
T ss_pred eEEEEecCCCHHHHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 58999998764211 111345666788777777776 45666677777777655556667776653
No 369
>PF10431 ClpB_D2-small: C-terminal, D2-small domain, of ClpB protein ; InterPro: IPR019489 Most Clp ATPases form complexes with peptidase subunits and are involved in protein degradation, though some, such as ClpB, do not associate with peptidases and are involved in protein disaggregation []. This entry represents the C-terminal domain of Clp ATPases, often referred to as the D2-small domain, which forms a mixed alpha-beta structure. Compared with the adjacent AAA D1-small domain (IPR003959 from INTERPRO) it lacks the long coiled-coil insertion, and instead of helix C4 contains a beta-strand (e3) that is part of a three stranded beta-pleated sheet. In Thermophilus the whole protein forms a hexamer with the D1-small and D2-small domains located on the outside of the hexamer, with the long coiled-coil being exposed on the surface. The D2-small domain is essential for oligomerisation, forming a tight interface with the D2-large domain of a neighbouring subunit, thereby providing enough binding energy to stabilise the functional assembly [].; PDB: 3HWS_A 3HTE_F 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 3PXI_A 1R6B_X ....
Probab=99.08 E-value=1.5e-10 Score=102.07 Aligned_cols=81 Identities=40% Similarity=0.773 Sum_probs=75.9
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhCCCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHcCCCCCCCEEE
Q 002012 867 LDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAILKGDIKEEDSVI 946 (982)
Q Consensus 867 l~~~~l~~il~~~l~~~~~~~~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~l~~~la~~~l~~~~~~~~~i~ 946 (982)
|+.+++.+|+...+.++.+++...++.+.++++++++|++.+|++.||||+|++.|++.+.+++|+.++.+.+.+|++|+
T Consensus 1 L~~~~l~~I~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~i~~~la~~il~~~~~~g~~v~ 80 (81)
T PF10431_consen 1 LSEEDLEKIADLQLKKLNERLKEKGIELEFDDAVVDYLAEKGYDPEYGARPLRRIIEREIEPPLADAILSGKIKEGDTVR 80 (81)
T ss_dssp --HHHHHHHHHSHHHHHHHHHHHTTEEEEE-HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHHHHHHHSCSCTTCEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCeEEecHHHHHHHHHhCcccCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcCEee
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred E
Q 002012 947 I 947 (982)
Q Consensus 947 v 947 (982)
|
T Consensus 81 v 81 (81)
T PF10431_consen 81 V 81 (81)
T ss_dssp E
T ss_pred C
Confidence 6
No 370
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=5.3e-10 Score=124.31 Aligned_cols=153 Identities=20% Similarity=0.338 Sum_probs=107.6
Q ss_pred eEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccccccccCCCCCccccccCCchhHHHhhCC-CeEEEEcc
Q 002012 695 SFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRLVGAPPGYVGYEEGGQLTEVVRRRP-YSVVLFDE 773 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~~~-~~Vl~lDE 773 (982)
..||+||||||||++..+||.+| +..+.-++.++..... .|..++...+ .+||+|++
T Consensus 237 GYLLYGPPGTGKSS~IaAmAn~L---~ydIydLeLt~v~~n~-------------------dLr~LL~~t~~kSIivIED 294 (457)
T KOG0743|consen 237 GYLLYGPPGTGKSSFIAAMANYL---NYDIYDLELTEVKLDS-------------------DLRHLLLATPNKSILLIED 294 (457)
T ss_pred cceeeCCCCCCHHHHHHHHHhhc---CCceEEeeeccccCcH-------------------HHHHHHHhCCCCcEEEEee
Confidence 39999999999999999999998 5666666666654332 2455555444 57999999
Q ss_pred ccccCH------------------HHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCChHHHHHhhhhcccchHHHH
Q 002012 774 IEKAHQ------------------DVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVY 835 (982)
Q Consensus 774 idkl~~------------------~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~ 835 (982)
||..-. -.+..||..+|. --. +-| ..-|||||||....
T Consensus 295 IDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDG-lwS-scg-----~ERIivFTTNh~Ek----------------- 350 (457)
T KOG0743|consen 295 IDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDG-LWS-SCG-----DERIIVFTTNHKEK----------------- 350 (457)
T ss_pred cccccccccccccccccccCCcceeehHHhhhhhcc-ccc-cCC-----CceEEEEecCChhh-----------------
Confidence 997611 245678888873 211 111 23589999997533
Q ss_pred HHHHHHHHHHHHhhcChHHHh--ccccccccCCCChhHHHHHHHHHHHH-----HHHHHHhCCCCccCCHH-HHHHHHhc
Q 002012 836 EVMKKQVVELARQTFRPEFLN--RIDEYIVFQPLDSKEISKIVEIQMNR-----VKDRLKQKKIDLHYTKE-AVTLLGIL 907 (982)
Q Consensus 836 ~~~~~~~~~~~~~~f~p~ll~--Rid~ii~F~pl~~~~l~~il~~~l~~-----~~~~~~~~~~~l~i~~~-a~~~L~~~ 907 (982)
++|+|+. |+|..|.+.-=+.+.++.++..++.. +...+.+.--..+++|+ +.+.|...
T Consensus 351 --------------LDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~~h~L~~eie~l~~~~~~tPA~V~e~lm~~ 416 (457)
T KOG0743|consen 351 --------------LDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEEDHRLFDEIERLIEETEVTPAQVAEELMKN 416 (457)
T ss_pred --------------cCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCCCcchhHHHHHHhhcCccCHHHHHHHHhhc
Confidence 8899995 99999999999999999999888643 34444443334567774 44666654
No 371
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.08 E-value=2.3e-09 Score=114.78 Aligned_cols=116 Identities=22% Similarity=0.175 Sum_probs=85.4
Q ss_pred CeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCC-CeEEEEecCch-------hHhhhhhcChHHHhccceEEecCCCH
Q 002012 363 QIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRG-ELRCIGATTLN-------EYRNYIEKDPALERRFQQVFCDQPSV 434 (982)
Q Consensus 363 ~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g-~i~vI~at~~~-------~~~~~~~~d~al~rRf~~i~i~~Ps~ 434 (982)
|.||||||+|+|- .+.+.+|..+|+.. -.++|.|||.- ++..-..++..|.+|+-.|...+++.
T Consensus 292 pGVLFIDEvHmLD--------IE~FsFlnrAlEse~aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLDRllII~t~py~~ 363 (450)
T COG1224 292 PGVLFIDEVHMLD--------IECFSFLNRALESELAPIIILATNRGMTKIRGTDIESPHGIPLDLLDRLLIISTRPYSR 363 (450)
T ss_pred cceEEEechhhhh--------HHHHHHHHHHhhcccCcEEEEEcCCceeeecccCCcCCCCCCHhhhhheeEEecCCCCH
Confidence 4699999999984 77888999999743 45666777653 12222357889999998888888899
Q ss_pred HHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCCcchhhHHHHHHHHHhhhh
Q 002012 435 ENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLPDKAIDLVDEAAAKLKME 495 (982)
Q Consensus 435 ~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~p~~a~~lld~a~~~~~~~ 495 (982)
+++.+|++.-+.. .++.++++++++++.+.. ...-+.+++|+.-|.-.+...
T Consensus 364 ~EireIi~iRa~e----e~i~l~~~Ale~L~~ig~-----etSLRYa~qLL~pa~iiA~~r 415 (450)
T COG1224 364 EEIREIIRIRAKE----EDIELSDDALEYLTDIGE-----ETSLRYAVQLLTPASIIAKRR 415 (450)
T ss_pred HHHHHHHHHhhhh----hccccCHHHHHHHHhhch-----hhhHHHHHHhccHHHHHHHHh
Confidence 9999999765554 689999999999998854 223355677776555544433
No 372
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.07 E-value=2.6e-09 Score=129.95 Aligned_cols=213 Identities=21% Similarity=0.254 Sum_probs=127.5
Q ss_pred CCCcccchHHHHHHHHHhccCCCCCcEEeCCCCCcHHHHHHHHHHHhhcC----CC-----CC----------------C
Q 002012 268 LDPVIGRDDEIRRCIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRG----DV-----PE----------------T 322 (982)
Q Consensus 268 l~~liG~~~~i~~l~~~L~~~~~~~iLL~GppGvGKT~la~~la~~l~~~----~~-----p~----------------~ 322 (982)
|..|||+++.+..++-.+......++||.|++|||||++|++|+..+..- +. |. .
T Consensus 3 f~~ivGq~~~~~al~~~av~~~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~~~~ 82 (633)
T TIGR02442 3 FTAIVGQEDLKLALLLNAVDPRIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYRPSE 82 (633)
T ss_pred cchhcChHHHHHHHHHHhhCCCCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhcccccc
Confidence 66899999988777766655555689999999999999999999987310 00 00 0
Q ss_pred CCCCeEEEEeccccccccccccc--HHHHHHH---HH--HHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhc
Q 002012 323 LQNRKLISLDMASLVAGTCYRGD--FEKRLKA---VL--KEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLG 395 (982)
Q Consensus 323 l~~~~v~~l~~~~l~~~~~~~g~--~e~~l~~---l~--~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le 395 (982)
....+++.+.++.... ...|. ++..+.. .+ ..+...+ +.|||||||+.+. ..+++.|+.+++
T Consensus 83 ~~~~pfv~~p~~~t~~--~l~G~~d~~~~l~~g~~~~~~G~L~~A~-~GiL~lDEi~~l~--------~~~q~~Ll~~le 151 (633)
T TIGR02442 83 QRPVPFVNLPLGATED--RVVGSLDIERALREGEKAFQPGLLAEAH-RGILYIDEVNLLD--------DHLVDVLLDAAA 151 (633)
T ss_pred cCCCCeeeCCCCCcHH--HcCCcccHHHHhhcCCeeecCcceeecC-CCeEEeChhhhCC--------HHHHHHHHHHHh
Confidence 0123455544332211 11121 1111100 00 0011112 3489999999996 677889999998
Q ss_pred CC---------------CeEEEEecCchhHhhhhhcChHHHhccc-eEEecCCC-HHHHHHHHHHHHH----------HH
Q 002012 396 RG---------------ELRCIGATTLNEYRNYIEKDPALERRFQ-QVFCDQPS-VENTISILRGLRE----------RY 448 (982)
Q Consensus 396 ~g---------------~i~vI~at~~~~~~~~~~~d~al~rRf~-~i~i~~Ps-~~e~~~IL~~~~~----------~~ 448 (982)
.| ++.+|+++|+.+. .+.++|.+||. .|.+..|. .+++.++++.... +|
T Consensus 152 ~g~~~v~r~g~~~~~~~~~~lIat~np~eg----~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~~~~~~~~~~~~~~~ 227 (633)
T TIGR02442 152 MGVNRVEREGLSVSHPARFVLIGTMNPEEG----DLRPQLLDRFGLCVDVAAPRDPEERVEIIRRRLAFDADPEAFAARW 227 (633)
T ss_pred cCCEEEEECCceeeecCCeEEEEecCCCCC----CCCHHHHhhcceEEEccCCCchHHHHHHHHHHHhhccCcHHHHHHh
Confidence 66 3688998887542 57899999997 56777663 5666777754221 11
Q ss_pred hh---------------hcCCccChHHHHHHHHHhhhhhccCCCcchhhHHHHHHHHHhhhhcc
Q 002012 449 EL---------------HHGVKISDSALVSAAVLADRYITERFLPDKAIDLVDEAAAKLKMEIT 497 (982)
Q Consensus 449 ~~---------------~~~v~i~~~~l~~~~~~s~r~i~~~~~p~~a~~lld~a~~~~~~~~~ 497 (982)
.. ...+.++++++.+++.++..+-- ..++..+.++.-|.+.+.+...
T Consensus 228 ~~~~~~l~~~i~~ar~~~~~V~is~~~~~~l~~~~~~~~i--~s~Ra~i~~~r~Ara~AaL~gr 289 (633)
T TIGR02442 228 AAEQEELRNRIARARSLLPSVRISDSLIRFISELCIEFGV--DGHRADIVMARAARALAALDGR 289 (633)
T ss_pred hhhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCC--CCccHHHHHHHHHHHHHHHcCC
Confidence 00 12356677777777666554311 1245555666666666555544
No 373
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.07 E-value=3.4e-09 Score=126.27 Aligned_cols=183 Identities=19% Similarity=0.272 Sum_probs=124.6
Q ss_pred cCCCCCcccchHHHHHHHHHhcc--CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccccc--
Q 002012 265 SGKLDPVIGRDDEIRRCIQILSR--RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGT-- 340 (982)
Q Consensus 265 ~~~l~~liG~~~~i~~l~~~L~~--~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~-- 340 (982)
...|+.+||.+..++++++.+.+ ....+++|+|++||||+++|+++...... .+.+++.+||+.+....
T Consensus 200 ~~~f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r-------~~~pfv~inca~~~~~~~e 272 (520)
T PRK10820 200 DSAFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRSPR-------GKKPFLALNCASIPDDVVE 272 (520)
T ss_pred cccccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHhCCC-------CCCCeEEeccccCCHHHHH
Confidence 45889999999988888876643 45667999999999999999998876422 25789999998764210
Q ss_pred ---------cccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCC-------------C
Q 002012 341 ---------CYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRG-------------E 398 (982)
Q Consensus 341 ---------~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g-------------~ 398 (982)
.+.|..+. -..+|+. .++ ..||||||+.|. ...+..|..+++.+ +
T Consensus 273 ~elFG~~~~~~~~~~~~-~~g~~e~---a~~-GtL~LdeI~~L~--------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~ 339 (520)
T PRK10820 273 SELFGHAPGAYPNALEG-KKGFFEQ---ANG-GSVLLDEIGEMS--------PRMQAKLLRFLNDGTFRRVGEDHEVHVD 339 (520)
T ss_pred HHhcCCCCCCcCCcccC-CCChhhh---cCC-CEEEEeChhhCC--------HHHHHHHHHHHhcCCcccCCCCcceeee
Confidence 00011000 0122322 233 379999999996 56677788877653 4
Q ss_pred eEEEEecCchhH--hhhhhcChHHHhccceEEecCCC----HHHHHHHHHHHHHHHhhhcC---CccChHHHHHHHHH
Q 002012 399 LRCIGATTLNEY--RNYIEKDPALERRFQQVFCDQPS----VENTISILRGLRERYELHHG---VKISDSALVSAAVL 467 (982)
Q Consensus 399 i~vI~at~~~~~--~~~~~~d~al~rRf~~i~i~~Ps----~~e~~~IL~~~~~~~~~~~~---v~i~~~~l~~~~~~ 467 (982)
+++|++|+.+.- ...-...+.|..|+..+.+..|+ .+|+..+++.+..++...++ +.++++++..+..+
T Consensus 340 vRiI~st~~~l~~l~~~g~f~~dL~~rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~~L~~y 417 (520)
T PRK10820 340 VRVICATQKNLVELVQKGEFREDLYYRLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRY 417 (520)
T ss_pred eEEEEecCCCHHHHHHcCCccHHHHhhcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHhcC
Confidence 689998877641 11112567788898767677665 45666666777777766554 37899999888776
No 374
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.06 E-value=1.7e-09 Score=132.80 Aligned_cols=180 Identities=18% Similarity=0.225 Sum_probs=126.8
Q ss_pred CCCCCcccchHHHHHHHHHhcc--CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEeccccccccccc
Q 002012 266 GKLDPVIGRDDEIRRCIQILSR--RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGTCYR 343 (982)
Q Consensus 266 ~~l~~liG~~~~i~~l~~~L~~--~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~~~~ 343 (982)
..|++++|.+..++++++.+.+ ....+++|+|++||||+++|++|.+.... .+.+++.+||+.+...
T Consensus 322 ~~~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r-------~~~pfv~vnc~~~~~~---- 390 (638)
T PRK11388 322 HTFDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESER-------AAGPYIAVNCQLYPDE---- 390 (638)
T ss_pred ccccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhCCc-------cCCCeEEEECCCCChH----
Confidence 3688999999999888876654 45667999999999999999999987532 2679999999876521
Q ss_pred ccHHHHHHHHHH------------HHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCC-------------C
Q 002012 344 GDFEKRLKAVLK------------EVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRG-------------E 398 (982)
Q Consensus 344 g~~e~~l~~l~~------------~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g-------------~ 398 (982)
.++ .++|. .+...+ +..||||||+.|. .+++..|+.+++.+ +
T Consensus 391 -~~~---~elfg~~~~~~~~~~~g~~~~a~-~GtL~ldei~~l~--------~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~ 457 (638)
T PRK11388 391 -ALA---EEFLGSDRTDSENGRLSKFELAH-GGTLFLEKVEYLS--------PELQSALLQVLKTGVITRLDSRRLIPVD 457 (638)
T ss_pred -HHH---HHhcCCCCcCccCCCCCceeECC-CCEEEEcChhhCC--------HHHHHHHHHHHhcCcEEeCCCCceEEee
Confidence 001 11221 111223 3489999999996 67778888888754 4
Q ss_pred eEEEEecCchhHh--hhhhcChHHHhccceEEecCCC----HHHHHHHHHHHHHHHhhhcC--CccChHHHHHHHHHhh
Q 002012 399 LRCIGATTLNEYR--NYIEKDPALERRFQQVFCDQPS----VENTISILRGLRERYELHHG--VKISDSALVSAAVLAD 469 (982)
Q Consensus 399 i~vI~at~~~~~~--~~~~~d~al~rRf~~i~i~~Ps----~~e~~~IL~~~~~~~~~~~~--v~i~~~~l~~~~~~s~ 469 (982)
+++|++|+.+... ..-...+.|..|+..+.+..|+ .+|+..+++.+..++...++ +.++++++..+..+..
T Consensus 458 ~riI~~t~~~l~~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~y~W 536 (638)
T PRK11388 458 VRVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSYRW 536 (638)
T ss_pred EEEEEeccCCHHHHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHcCCC
Confidence 6799999876421 1113456677788877777776 35666677777777654433 5789999999888753
No 375
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=9.9e-10 Score=133.62 Aligned_cols=206 Identities=23% Similarity=0.317 Sum_probs=140.6
Q ss_pred hcccccchHHHHHHHHHHHHHhcCC----C-CCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEecccccccc
Q 002012 662 HKRVIGQDIAVKSVADAIRRSRAGL----S-DPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKH 736 (982)
Q Consensus 662 ~~~iiGq~~a~~~l~~~i~~~~~g~----~-~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~ 736 (982)
+..|-|.+.++..+.+.+-...... + .-..|. .+||+||||||||.+|+++|..+-..+.. +.+.|..-.+
T Consensus 264 fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPr-gvL~~GppGTGkTl~araLa~~~s~~~~k-isffmrkgaD-- 339 (1080)
T KOG0732|consen 264 FDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPR-GVLFHGPPGTGKTLMARALAAACSRGNRK-ISFFMRKGAD-- 339 (1080)
T ss_pred ccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCc-ceeecCCCCCchhHHHHhhhhhhcccccc-cchhhhcCch--
Confidence 4778888888888888774322110 0 112333 49999999999999999999987432222 2222211100
Q ss_pred ccccccCCCCCccccccC--CchhHHHhhCCCeEEEEcccccc-----------CHHHHHHHHHhhhcCceecCCCcEEe
Q 002012 737 SVSRLVGAPPGYVGYEEG--GQLTEVVRRRPYSVVLFDEIEKA-----------HQDVFNILLQLLDDGRITDSQGRTVS 803 (982)
Q Consensus 737 ~~~~l~g~~~g~vg~~~~--~~l~~~l~~~~~~Vl~lDEidkl-----------~~~~~~~Ll~~le~g~~~d~~g~~~~ 803 (982)
-. ..|+|..+. +.+++..++..++|+||||||-+ |..+...||.+|+. - ++
T Consensus 340 ~l-------skwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdG-l--ds------ 403 (1080)
T KOG0732|consen 340 CL-------SKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDG-L--DS------ 403 (1080)
T ss_pred hh-------ccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccC-C--CC------
Confidence 01 125665443 35788888999999999999954 44588999999984 1 12
Q ss_pred cccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHH--HhccccccccCCCChhHHHHHHHHHHH
Q 002012 804 FTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEF--LNRIDEYIVFQPLDSKEISKIVEIQMN 881 (982)
Q Consensus 804 ~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l--l~Rid~ii~F~pl~~~~l~~il~~~l~ 881 (982)
...+++|.+||.... +.|++ -+|||..+.|+-++.++..+|+..+=.
T Consensus 404 RgqVvvigATnRpda-------------------------------~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtr 452 (1080)
T KOG0732|consen 404 RGQVVVIGATNRPDA-------------------------------IDPALRRPGRFDREFYFPLPDVDARAKILDIHTR 452 (1080)
T ss_pred CCceEEEcccCCccc-------------------------------cchhhcCCcccceeEeeeCCchHHHHHHHHHhcc
Confidence 246899999997643 56777 389999999999999999999886644
Q ss_pred HHHHHHHhCCCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHH
Q 002012 882 RVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENE 929 (982)
Q Consensus 882 ~~~~~~~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~l~~~ 929 (982)
+ -.-.+.....+.|++. ...||...|+-.+......+
T Consensus 453 k---------w~~~i~~~l~~~la~~--t~gy~gaDlkaLCTeAal~~ 489 (1080)
T KOG0732|consen 453 K---------WEPPISRELLLWLAEE--TSGYGGADLKALCTEAALIA 489 (1080)
T ss_pred C---------CCCCCCHHHHHHHHHh--ccccchHHHHHHHHHHhhhh
Confidence 3 2255777888888885 34567677877777644443
No 376
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=2.9e-09 Score=120.24 Aligned_cols=213 Identities=19% Similarity=0.238 Sum_probs=136.6
Q ss_pred cccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCC--CceEEEecccccccccccc
Q 002012 663 KRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTE--NALVRIDMSEYMEKHSVSR 740 (982)
Q Consensus 663 ~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~--~~~v~i~~s~~~~~~~~~~ 740 (982)
+.+.+.++.++++...+.....|.. |. +++++||||||||.+++.+.+.+.... ..++++||-.+.....+..
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~~~----p~-n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~ 91 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRGER----PS-NIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLS 91 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcCCC----Cc-cEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHH
Confidence 4578888888889888877655532 33 599999999999999999999994331 2279999999877655422
Q ss_pred ----ccCCCCCccccccC---CchhHHHhh-CCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEEe
Q 002012 741 ----LVGAPPGYVGYEEG---GQLTEVVRR-RPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMT 812 (982)
Q Consensus 741 ----l~g~~~g~vg~~~~---~~l~~~l~~-~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~t 812 (982)
-+|..| ..|.... ..+.+.+.. ...-||++||+|.+...-.+.|+.++...... -.++.+|+.
T Consensus 92 ~i~~~~~~~p-~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~--------~~~v~vi~i 162 (366)
T COG1474 92 KILNKLGKVP-LTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGEN--------KVKVSIIAV 162 (366)
T ss_pred HHHHHcCCCC-CCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcccc--------ceeEEEEEE
Confidence 122222 2222111 223444444 34469999999999777557777777643211 246788888
Q ss_pred cCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccc-cccccCCCChhHHHHHHHHHHHHHHHHHHhCC
Q 002012 813 SNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRID-EYIVFQPLDSKEISKIVEIQMNRVKDRLKQKK 891 (982)
Q Consensus 813 sn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid-~ii~F~pl~~~~l~~il~~~l~~~~~~~~~~~ 891 (982)
+|...- . ..|.|.+.+++. ..|.|+|++.+++.+|+....+...
T Consensus 163 ~n~~~~--------------------~--------~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~------- 207 (366)
T COG1474 163 SNDDKF--------------------L--------DYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGF------- 207 (366)
T ss_pred eccHHH--------------------H--------HHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhc-------
Confidence 885321 1 114444445553 3589999999999999998877521
Q ss_pred CCccCCHHHHHHHHhcCCCCCCCchHHHHHHHH
Q 002012 892 IDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQ 924 (982)
Q Consensus 892 ~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~ 924 (982)
..-.++++++++++.......-.||--..+++.
T Consensus 208 ~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~ 240 (366)
T COG1474 208 SAGVIDDDVLKLIAALVAAESGDARKAIDILRR 240 (366)
T ss_pred cCCCcCccHHHHHHHHHHHcCccHHHHHHHHHH
Confidence 224688888888876432221134544444443
No 377
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.05 E-value=5.2e-09 Score=114.36 Aligned_cols=109 Identities=24% Similarity=0.171 Sum_probs=72.8
Q ss_pred CeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCC-CeEEEEecCch-------hHhhhhhcChHHHhccceEEecCCCH
Q 002012 363 QIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRG-ELRCIGATTLN-------EYRNYIEKDPALERRFQQVFCDQPSV 434 (982)
Q Consensus 363 ~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g-~i~vI~at~~~-------~~~~~~~~d~al~rRf~~i~i~~Ps~ 434 (982)
|.||||||+|+|- .+...+|..++|.. -..+|.|||+- +|..-..++..|++||-.|...+++.
T Consensus 279 pGVLFIDEvHmLD--------iEcFsfLnralEs~~sPiiIlATNRg~~~irGt~~~sphGiP~DlLDRllII~t~py~~ 350 (398)
T PF06068_consen 279 PGVLFIDEVHMLD--------IECFSFLNRALESELSPIIILATNRGITKIRGTDIISPHGIPLDLLDRLLIIRTKPYSE 350 (398)
T ss_dssp E-EEEEESGGGSB--------HHHHHHHHHHHTSTT--EEEEEES-SEEE-BTTS-EEETT--HHHHTTEEEEEE----H
T ss_pred cceEEecchhhcc--------HHHHHHHHHHhcCCCCcEEEEecCceeeeccCccCcCCCCCCcchHhhcEEEECCCCCH
Confidence 4599999999985 77889999999854 55777777743 22233457789999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCCcchhhHHHHHH
Q 002012 435 ENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLPDKAIDLVDEA 488 (982)
Q Consensus 435 ~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~p~~a~~lld~a 488 (982)
+|..+|++.-++. .++.++++++..+..++..+ .-+.|++|+.-|
T Consensus 351 ~ei~~Il~iR~~~----E~v~i~~~al~~L~~ig~~~-----SLRYAiqLi~~a 395 (398)
T PF06068_consen 351 EEIKQILKIRAKE----EDVEISEDALDLLTKIGVET-----SLRYAIQLITPA 395 (398)
T ss_dssp HHHHHHHHHHHHH----CT--B-HHHHHHHHHHHHHS------HHHHHHCHHHH
T ss_pred HHHHHHHHhhhhh----hcCcCCHHHHHHHHHHhhhc-----cHHHHHHhhhhh
Confidence 9999999877766 78999999999998886532 224456665433
No 378
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.05 E-value=2.3e-09 Score=108.12 Aligned_cols=139 Identities=25% Similarity=0.357 Sum_probs=87.2
Q ss_pred cccchHHHHHHHHHhcc--CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccccc-------c
Q 002012 271 VIGRDDEIRRCIQILSR--RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGT-------C 341 (982)
Q Consensus 271 liG~~~~i~~l~~~L~~--~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~-------~ 341 (982)
+||.+..++++++.+.+ ....+++|+|++||||+.+|+++.+...+ .+.+++.+||+.+.... .
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r-------~~~pfi~vnc~~~~~~~~e~~LFG~ 73 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNSPR-------KNGPFISVNCAALPEELLESELFGH 73 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCSTT-------TTS-EEEEETTTS-HHHHHHHHHEB
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhhc-------ccCCeEEEehhhhhcchhhhhhhcc
Confidence 58899988888886655 45678999999999999999999985422 36799999998764210 0
Q ss_pred ccccHHH---HHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCC-------------CeEEEEec
Q 002012 342 YRGDFEK---RLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRG-------------ELRCIGAT 405 (982)
Q Consensus 342 ~~g~~e~---~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g-------------~i~vI~at 405 (982)
..|.+.. .-..++.. ++++ +||||||+.|. .+++..|+.+++.+ ++++|++|
T Consensus 74 ~~~~~~~~~~~~~G~l~~---A~~G-tL~Ld~I~~L~--------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st 141 (168)
T PF00158_consen 74 EKGAFTGARSDKKGLLEQ---ANGG-TLFLDEIEDLP--------PELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIAST 141 (168)
T ss_dssp CSSSSTTTSSEBEHHHHH---TTTS-EEEEETGGGS---------HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEE
T ss_pred ccccccccccccCCceee---ccce-EEeecchhhhH--------HHHHHHHHHHHhhchhccccccccccccceEEeec
Confidence 0000000 00123332 2433 89999999997 77888899988743 67999999
Q ss_pred CchhH--hhhhhcChHHHhccceEE
Q 002012 406 TLNEY--RNYIEKDPALERRFQQVF 428 (982)
Q Consensus 406 ~~~~~--~~~~~~d~al~rRf~~i~ 428 (982)
+.+.. -..-...+.|..|+..+.
T Consensus 142 ~~~l~~~v~~g~fr~dLy~rL~~~~ 166 (168)
T PF00158_consen 142 SKDLEELVEQGRFREDLYYRLNVFT 166 (168)
T ss_dssp SS-HHHHHHTTSS-HHHHHHHTTEE
T ss_pred CcCHHHHHHcCCChHHHHHHhceEe
Confidence 97632 112234566666665444
No 379
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.04 E-value=5e-09 Score=109.25 Aligned_cols=179 Identities=20% Similarity=0.353 Sum_probs=119.5
Q ss_pred cccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEecccccccccccccc
Q 002012 663 KRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRLV 742 (982)
Q Consensus 663 ~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l~ 742 (982)
+.++|-+..++.|.+-......|. |..++|++|+.|||||++++++...+...+..+|.+.-.++..-
T Consensus 27 ~~L~Gie~Qk~~l~~Nt~~Fl~G~-----pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~~l------- 94 (249)
T PF05673_consen 27 DDLIGIERQKEALIENTEQFLQGL-----PANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLGDL------- 94 (249)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcCC-----CCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhccH-------
Confidence 567888888888888887776653 44579999999999999999999999777777877766554321
Q ss_pred CCCCCccccccCCchhHHHhhCCC-eEEEEcccccc-CHHHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCChHHH
Q 002012 743 GAPPGYVGYEEGGQLTEVVRRRPY-SVVLFDEIEKA-HQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYI 820 (982)
Q Consensus 743 g~~~g~vg~~~~~~l~~~l~~~~~-~Vl~lDEidkl-~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~i 820 (982)
..+.+.++..|. =|||+|+.--- ...-...|..+||.|--. ...|++|.+|||.-. +
T Consensus 95 ------------~~l~~~l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~-------~P~NvliyATSNRRH--L 153 (249)
T PF05673_consen 95 ------------PELLDLLRDRPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEA-------RPDNVLIYATSNRRH--L 153 (249)
T ss_pred ------------HHHHHHHhcCCCCEEEEecCCCCCCCcHHHHHHHHHhcCcccc-------CCCcEEEEEecchhh--c
Confidence 125566665554 49999986522 334567777778754322 236899999999531 1
Q ss_pred HH-hhhhccc-chHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHHH
Q 002012 821 LE-TLQSVQD-SKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNR 882 (982)
Q Consensus 821 ~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~ 882 (982)
+. .+..... ..+. .. ..+.+...+ .|.+||...|.|.|++.++..+|+...+.+
T Consensus 154 v~E~~~d~~~~~~~e--ih----~~d~~eEkl--SLsDRFGL~l~F~~~~q~~YL~IV~~~~~~ 209 (249)
T PF05673_consen 154 VPESFSDREDIQDDE--IH----PSDTIEEKL--SLSDRFGLWLSFYPPDQEEYLAIVRHYAER 209 (249)
T ss_pred cchhhhhccCCCccc--cC----cchHHHHHH--hHHHhCCcEEEecCCCHHHHHHHHHHHHHH
Confidence 11 1111110 0000 00 011111122 477999999999999999999999999876
No 380
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=99.04 E-value=8.9e-09 Score=115.25 Aligned_cols=178 Identities=15% Similarity=0.184 Sum_probs=119.8
Q ss_pred HHHHHHHHHhccCCCCCc-EEeCCCCCcHHHHHHHHHHHhhcCCCCC--------------CCCCCeEEEEecccccccc
Q 002012 276 DEIRRCIQILSRRTKNNP-VIIGEPGVGKTAIAEGLAQRIVRGDVPE--------------TLQNRKLISLDMASLVAGT 340 (982)
Q Consensus 276 ~~i~~l~~~L~~~~~~~i-LL~GppGvGKT~la~~la~~l~~~~~p~--------------~l~~~~v~~l~~~~l~~~~ 340 (982)
..-+++++.+.+...+|. ||.||+|+||+++|..+|+.+.+..... ......++.+... +.
T Consensus 9 ~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~----~~ 84 (334)
T PRK07993 9 PDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPE----KG 84 (334)
T ss_pred HHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecc----cc
Confidence 455677777777665664 5889999999999999999997742111 0112233333221 00
Q ss_pred cccccHHHHHHHHHHHHHhc---CCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhc--CCCeEEEEecCchhHhhhhh
Q 002012 341 CYRGDFEKRLKAVLKEVTKS---NGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLG--RGELRCIGATTLNEYRNYIE 415 (982)
Q Consensus 341 ~~~g~~e~~l~~l~~~~~~~---~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le--~g~i~vI~at~~~~~~~~~~ 415 (982)
+ ..-..+.++.+.+.+... ++.-|++||++|.|. ..++|.|+..|| .++..+|.+|...+ .
T Consensus 85 ~-~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~--------~~AaNaLLKtLEEPp~~t~fiL~t~~~~-----~ 150 (334)
T PRK07993 85 K-SSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLT--------DAAANALLKTLEEPPENTWFFLACREPA-----R 150 (334)
T ss_pred c-ccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhC--------HHHHHHHHHHhcCCCCCeEEEEEECChh-----h
Confidence 0 011233455555555422 345699999999997 678899999888 46888899998887 7
Q ss_pred cChHHHhccceEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCCcchhhHHHH
Q 002012 416 KDPALERRFQQVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLPDKAIDLVD 486 (982)
Q Consensus 416 ~d~al~rRf~~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~p~~a~~lld 486 (982)
+-|.++|||+.+.+..|+.++....|.. + ..++++....++.++++ .|..|.++++
T Consensus 151 lLpTIrSRCq~~~~~~~~~~~~~~~L~~---~------~~~~~~~a~~~~~la~G------~~~~Al~l~~ 206 (334)
T PRK07993 151 LLATLRSRCRLHYLAPPPEQYALTWLSR---E------VTMSQDALLAALRLSAG------APGAALALLQ 206 (334)
T ss_pred ChHHHHhccccccCCCCCHHHHHHHHHH---c------cCCCHHHHHHHHHHcCC------CHHHHHHHhc
Confidence 9999999999999999999887776642 1 13555556666777653 3566666643
No 381
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.03 E-value=6.2e-11 Score=116.17 Aligned_cols=111 Identities=24% Similarity=0.390 Sum_probs=72.6
Q ss_pred CcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccccccccccHH-------HHHHHHHHHHHhcCCCe
Q 002012 292 NPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGTCYRGDFE-------KRLKAVLKEVTKSNGQI 364 (982)
Q Consensus 292 ~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~~~~g~~e-------~~l~~l~~~~~~~~~~~ 364 (982)
+++|+||||||||++|+.+|+.+ +.+++.+.++.........|.+. ..-..+...+ ..+.
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~----------~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~---~~~~ 67 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALL----------GRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAM---RKGG 67 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH----------TCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTH---HEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHh----------hcceEEEEeccccccccceeeeeecccccccccccccccc---ccee
Confidence 58999999999999999999999 77888887765442211111111 0001111111 1356
Q ss_pred EEEEccchhhhhCCCCCchhhHHHHHHhhhcCC---------------------CeEEEEecCchhHhhhhhcChHHHhc
Q 002012 365 ILFIDELHTIIGAGNQSGAMDASNMLKPMLGRG---------------------ELRCIGATTLNEYRNYIEKDPALERR 423 (982)
Q Consensus 365 IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g---------------------~i~vI~at~~~~~~~~~~~d~al~rR 423 (982)
|+||||++... .++.+.|.++++.+ .+++|+|+|+.. .....++++|++|
T Consensus 68 il~lDEin~a~--------~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~-~~~~~l~~al~~R 138 (139)
T PF07728_consen 68 ILVLDEINRAP--------PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRD-KGRKELSPALLDR 138 (139)
T ss_dssp EEEESSCGG----------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST---TTTTCHHHHTT
T ss_pred EEEECCcccCC--------HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCC-CCcCcCCHHHHhh
Confidence 99999999875 56777777777521 279999999887 4455799999999
Q ss_pred c
Q 002012 424 F 424 (982)
Q Consensus 424 f 424 (982)
|
T Consensus 139 f 139 (139)
T PF07728_consen 139 F 139 (139)
T ss_dssp -
T ss_pred C
Confidence 8
No 382
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=99.02 E-value=2.5e-09 Score=118.42 Aligned_cols=210 Identities=20% Similarity=0.265 Sum_probs=131.4
Q ss_pred HhhhcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEecc----ccc-
Q 002012 659 EVLHKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMS----EYM- 733 (982)
Q Consensus 659 ~~l~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s----~~~- 733 (982)
..++..++||+..+..|.-... ...++.+|+.|+.|||||+++++|+..|.. ...+ ++|. -..
T Consensus 13 ~~pf~aivGqd~lk~aL~l~av---------~P~iggvLI~G~kGtaKSt~~Rala~LLp~--~~~V-~gc~f~cdP~~P 80 (423)
T COG1239 13 NLPFTAIVGQDPLKLALGLNAV---------DPQIGGALIAGEKGTAKSTLARALADLLPE--IEVV-IGCPFNCDPDDP 80 (423)
T ss_pred ccchhhhcCchHHHHHHhhhhc---------ccccceeEEecCCCccHHHHHHHHHHhCCc--ccee-cCCCCCCCCCCh
Confidence 3567889999988776643211 233456999999999999999999999821 1111 1221 000
Q ss_pred --------cc----------cccccccCCCCCcccc------------ccC--CchhHHHhhCCCeEEEEccccccCHHH
Q 002012 734 --------EK----------HSVSRLVGAPPGYVGY------------EEG--GQLTEVVRRRPYSVVLFDEIEKAHQDV 781 (982)
Q Consensus 734 --------~~----------~~~~~l~g~~~g~vg~------------~~~--~~l~~~l~~~~~~Vl~lDEidkl~~~~ 781 (982)
.. .....+++.|.+-+-. ..+ -.-.+.+.+++.+|++|||+..++..+
T Consensus 81 ~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d~l 160 (423)
T COG1239 81 EEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDDHL 160 (423)
T ss_pred hhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccccHHH
Confidence 00 0000133333332111 000 011345567888999999999999999
Q ss_pred HHHHHHhhhcCc-eecCCCcEEec-ccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccc
Q 002012 782 FNILLQLLDDGR-ITDSQGRTVSF-TNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRID 859 (982)
Q Consensus 782 ~~~Ll~~le~g~-~~d~~g~~~~~-~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid 859 (982)
++.||.++++|. ..-..|..+.. .++++|.|.|+.. +.++|.|++||.
T Consensus 161 vd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEe------------------------------GeLrpqLlDRfg 210 (423)
T COG1239 161 VDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEE------------------------------GELRPQLLDRFG 210 (423)
T ss_pred HHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccc------------------------------cccchhhHhhhc
Confidence 999999999983 33344666655 8899999999862 227889999998
Q ss_pred cccccCCCC-hhHHHHHHHHHHH----------HHH---HHHH------hC-CCCccCCHHHHHHHHhcCCC
Q 002012 860 EYIVFQPLD-SKEISKIVEIQMN----------RVK---DRLK------QK-KIDLHYTKEAVTLLGILGFD 910 (982)
Q Consensus 860 ~ii~F~pl~-~~~l~~il~~~l~----------~~~---~~~~------~~-~~~l~i~~~a~~~L~~~~~~ 910 (982)
..|...++. .++..+|+...+. ++. ..++ .. -..+.+++++..++++.+..
T Consensus 211 ~~v~~~~~~~~~~rv~Ii~r~~~f~~~Pe~f~~~~~~~~~~lR~~ii~ar~~l~~V~l~~~~~~~ia~~~~~ 282 (423)
T COG1239 211 LEVDTHYPLDLEERVEIIRRRLAFEAVPEAFLEKYADAQRALRARIIAARSLLSEVELDDDAETKIAELCAR 282 (423)
T ss_pred ceeeccCCCCHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHHHH
Confidence 777666544 4666666655543 111 1111 12 24577888888887776544
No 383
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=99.01 E-value=2.2e-09 Score=116.25 Aligned_cols=145 Identities=15% Similarity=0.257 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccccccccC-CCCC-
Q 002012 670 IAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRLVG-APPG- 747 (982)
Q Consensus 670 ~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l~g-~~~g- 747 (982)
.+.+.+..++...+.. ..+||+||+|+||+.+|..+|+.+++.+.+ -.|..+ ....+.++.- .|.+
T Consensus 4 ~~~~~L~~~i~~~rl~--------HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~---~~c~~~-~~~~HPD~~~i~p~~~ 71 (290)
T PRK05917 4 AAWEALIQRVRDQKVP--------SAIILHGQDLSNLSARAYELASLILKETSP---EAAYKI-SQKIHPDIHEFSPQGK 71 (290)
T ss_pred HHHHHHHHHHHcCCcC--------eeEeeECCCCCcHHHHHHHHHHHHhCCCCc---cHHHHH-hcCCCCCEEEEecCCC
Confidence 3455666666643222 249999999999999999999999764322 112111 1111222110 1111
Q ss_pred --ccccccCCchhHHHhhC----CCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCChHHHH
Q 002012 748 --YVGYEEGGQLTEVVRRR----PYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYIL 821 (982)
Q Consensus 748 --~vg~~~~~~l~~~l~~~----~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~i~ 821 (982)
.++.++.+.+.+.+... ++.|++||++|+|+.+.+|+||+.||+ +..+++||++|+....
T Consensus 72 ~~~I~idqiR~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEE-----------Pp~~~~fiL~~~~~~~--- 137 (290)
T PRK05917 72 GRLHSIETPRAIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLED-----------PPQHGVIILTSAKPQR--- 137 (290)
T ss_pred CCcCcHHHHHHHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhc-----------CCCCeEEEEEeCChhh---
Confidence 13334444455555544 457999999999999999999999997 2357899998876433
Q ss_pred HhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCCh
Q 002012 822 ETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDS 869 (982)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~ 869 (982)
+.|++++|| ..+.|+|+..
T Consensus 138 ----------------------------ll~TI~SRc-q~~~~~~~~~ 156 (290)
T PRK05917 138 ----------------------------LPPTIRSRS-LSIHIPMEEK 156 (290)
T ss_pred ----------------------------CcHHHHhcc-eEEEccchhc
Confidence 788999999 7899998753
No 384
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.01 E-value=8.5e-10 Score=117.68 Aligned_cols=191 Identities=17% Similarity=0.294 Sum_probs=108.7
Q ss_pred cccchHHHHHHHHHhccCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEec---------ccc-----
Q 002012 271 VIGRDDEIRRCIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDM---------ASL----- 336 (982)
Q Consensus 271 liG~~~~i~~l~~~L~~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~---------~~l----- 336 (982)
.+||+.+++.+.+.+......+++|+||.|+|||++++.+.+.+...+. .++.++. ..+
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~-------~~~y~~~~~~~~~~~~~~~~~~~~ 73 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEKGY-------KVVYIDFLEESNESSLRSFIEETS 73 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT--EE-------CCCHHCCTTBSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCC-------cEEEEecccchhhhHHHHHHHHHH
Confidence 4799999999999998877788999999999999999999998743211 1111110 000
Q ss_pred --------cc----cc-------cccccHHHHHHHHHHHHHhcCCCeEEEEccchhhh-hCCCCC-chhhHHHHHHhhhc
Q 002012 337 --------VA----GT-------CYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTII-GAGNQS-GAMDASNMLKPMLG 395 (982)
Q Consensus 337 --------~~----~~-------~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~-~~~~~~-~~~~~~~~L~~~le 395 (982)
.. .. .........+..+++.+...+.++||+|||++.+. ...... -...+.+++.....
T Consensus 74 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~ 153 (234)
T PF01637_consen 74 LADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLS 153 (234)
T ss_dssp HHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccc
Confidence 00 00 01223455677788887765556999999999997 211111 11233333333334
Q ss_pred CCCeEEEEecCchhHh-hhhhcChHHHhccceEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhh
Q 002012 396 RGELRCIGATTLNEYR-NYIEKDPALERRFQQVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRY 471 (982)
Q Consensus 396 ~g~i~vI~at~~~~~~-~~~~~d~al~rRf~~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~ 471 (982)
...+.+|.+++...+. .+......+..|+..+.+++.+.++..++++.....+ .++.++++.++.+..+++++
T Consensus 154 ~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~gG~ 227 (234)
T PF01637_consen 154 QQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL---IKLPFSDEDIEEIYSLTGGN 227 (234)
T ss_dssp -TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC---------HHHHHHHHHHHTT-
T ss_pred cCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh---hcccCCHHHHHHHHHHhCCC
Confidence 5677666666654433 3344566677888889999999999999998766653 22245899999999998754
No 385
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=99.00 E-value=1.2e-09 Score=121.86 Aligned_cols=160 Identities=16% Similarity=0.223 Sum_probs=101.9
Q ss_pred ccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCC-----ceEEEecccccccccccc
Q 002012 666 IGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTEN-----ALVRIDMSEYMEKHSVSR 740 (982)
Q Consensus 666 iGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~-----~~v~i~~s~~~~~~~~~~ 740 (982)
.++....+.+.... .+-...+||+||+|+|||++|+.+|+.+.+... ++-.+..........+..
T Consensus 4 PW~~~~w~~l~~~~----------~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD 73 (325)
T PRK08699 4 PWHQEQWRQIAEHW----------ERRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPD 73 (325)
T ss_pred CccHHHHHHHHHhc----------CCcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCC
Confidence 46666666665441 122234999999999999999999999965321 221111111111112222
Q ss_pred c--cCCC-----CC----ccccccCCchhHHHhhC----CCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecc
Q 002012 741 L--VGAP-----PG----YVGYEEGGQLTEVVRRR----PYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFT 805 (982)
Q Consensus 741 l--~g~~-----~g----~vg~~~~~~l~~~l~~~----~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~ 805 (982)
+ +... .| .++.++.+.+.+.+... ++.|+++|+++.+++..++.|++.||+.. .
T Consensus 74 ~~~~~p~~~~~~~g~~~~~I~id~iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~-----------~ 142 (325)
T PRK08699 74 FYEITPLSDEPENGRKLLQIKIDAVREIIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEPP-----------P 142 (325)
T ss_pred EEEEecccccccccccCCCcCHHHHHHHHHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHhCc-----------C
Confidence 1 1110 11 12333334455555543 35799999999999999999999999732 2
Q ss_pred cEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHH
Q 002012 806 NCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEI 878 (982)
Q Consensus 806 ~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~ 878 (982)
++.||++|+.... +.|.+.+|| ..+.|+|++.+++.+.+..
T Consensus 143 ~~~~Ilvth~~~~-------------------------------ll~ti~SRc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 143 QVVFLLVSHAADK-------------------------------VLPTIKSRC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred CCEEEEEeCChHh-------------------------------ChHHHHHHh-hhhcCCCCCHHHHHHHHHh
Confidence 4667777765432 567889999 7999999999998777654
No 386
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.00 E-value=1.4e-08 Score=114.27 Aligned_cols=164 Identities=19% Similarity=0.317 Sum_probs=111.9
Q ss_pred CCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccccccccccHH-HHHHHHHHHHHhcCCCeEEEE
Q 002012 290 KNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGTCYRGDFE-KRLKAVLKEVTKSNGQIILFI 368 (982)
Q Consensus 290 ~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~~~~g~~e-~~l~~l~~~~~~~~~~~IL~I 368 (982)
.+.++|+||+|.|||+|+++++..+.... .+..++++....+... +.-... +.+.++-+.. ..+ +|+|
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~-----~~a~v~y~~se~f~~~--~v~a~~~~~~~~Fk~~y-~~d---lllI 181 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANG-----PNARVVYLTSEDFTND--FVKALRDNEMEKFKEKY-SLD---LLLI 181 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhC-----CCceEEeccHHHHHHH--HHHHHHhhhHHHHHHhh-ccC---eeee
Confidence 44567889999999999999999986543 2667888765443311 000000 0111111111 223 8999
Q ss_pred ccchhhhhCCCCCchhhHHHHHHhhhcCCCeEEEEecCchhHhhhhhcChHHHhccc---eEEecCCCHHHHHHHHHHHH
Q 002012 369 DELHTIIGAGNQSGAMDASNMLKPMLGRGELRCIGATTLNEYRNYIEKDPALERRFQ---QVFCDQPSVENTISILRGLR 445 (982)
Q Consensus 369 DEi~~l~~~~~~~~~~~~~~~L~~~le~g~i~vI~at~~~~~~~~~~~d~al~rRf~---~i~i~~Ps~~e~~~IL~~~~ 445 (982)
|+|+.+.+... ...+..+.+..+.+.|+ .+|.|+...+. ..-.+.|.|++||. .+.+.+|+.+.+..||+...
T Consensus 182 DDiq~l~gk~~--~qeefFh~FN~l~~~~k-qIvltsdr~P~-~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka 257 (408)
T COG0593 182 DDIQFLAGKER--TQEEFFHTFNALLENGK-QIVLTSDRPPK-ELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKA 257 (408)
T ss_pred chHhHhcCChh--HHHHHHHHHHHHHhcCC-EEEEEcCCCch-hhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHH
Confidence 99999865432 24677788888888887 55555533331 23357799999995 88999999999999998866
Q ss_pred HHHhhhcCCccChHHHHHHHHHhhhhh
Q 002012 446 ERYELHHGVKISDSALVSAAVLADRYI 472 (982)
Q Consensus 446 ~~~~~~~~v~i~~~~l~~~~~~s~r~i 472 (982)
+. .++.++++++.+++....+-+
T Consensus 258 ~~----~~~~i~~ev~~~la~~~~~nv 280 (408)
T COG0593 258 ED----RGIEIPDEVLEFLAKRLDRNV 280 (408)
T ss_pred Hh----cCCCCCHHHHHHHHHHhhccH
Confidence 55 689999999999988866543
No 387
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=99.00 E-value=1.4e-09 Score=118.28 Aligned_cols=157 Identities=16% Similarity=0.274 Sum_probs=102.1
Q ss_pred cchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCC----ceEEEecccccccccccccc
Q 002012 667 GQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTEN----ALVRIDMSEYMEKHSVSRLV 742 (982)
Q Consensus 667 Gq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~----~~v~i~~s~~~~~~~~~~l~ 742 (982)
+|+.+++.+..++...+. ...+||+|| +||+++|+.+|+.+++.+. ++-.+..........+.++.
T Consensus 6 ~q~~~~~~L~~~~~~~rl--------~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~ 75 (290)
T PRK07276 6 KQPKVFQRFQTILEQDRL--------NHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVT 75 (290)
T ss_pred HHHHHHHHHHHHHHcCCc--------ceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCee
Confidence 467788888888875432 234999996 6899999999999976432 22111111111111222221
Q ss_pred C-CCCC-ccccccCCchhHHHhh----CCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCC
Q 002012 743 G-APPG-YVGYEEGGQLTEVVRR----RPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIG 816 (982)
Q Consensus 743 g-~~~g-~vg~~~~~~l~~~l~~----~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~ 816 (982)
- .|.| .++.++.+.+...+.. +++.|++||++|+|+....|+||+.||+ +..+++||++|+..
T Consensus 76 ~i~p~~~~I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m~~~AaNaLLKtLEE-----------Pp~~t~~iL~t~~~ 144 (290)
T PRK07276 76 VIEPQGQVIKTDTIRELVKNFSQSGYEGKQQVFIIKDADKMHVNAANSLLKVIEE-----------PQSEIYIFLLTNDE 144 (290)
T ss_pred eecCCCCcCCHHHHHHHHHHHhhCcccCCcEEEEeehhhhcCHHHHHHHHHHhcC-----------CCCCeEEEEEECCh
Confidence 1 1111 1233333444444444 3457999999999999999999999997 22568999988764
Q ss_pred hHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHH
Q 002012 817 SHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVE 877 (982)
Q Consensus 817 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~ 877 (982)
.. +.|++.+|| .+|+|++ +.+++.+++.
T Consensus 145 ~~-------------------------------lLpTI~SRc-q~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 145 NK-------------------------------VLPTIKSRT-QIFHFPK-NEAYLIQLLE 172 (290)
T ss_pred hh-------------------------------CchHHHHcc-eeeeCCC-cHHHHHHHHH
Confidence 32 788999999 7999977 6666666654
No 388
>PRK06620 hypothetical protein; Validated
Probab=99.00 E-value=4.8e-09 Score=110.29 Aligned_cols=145 Identities=17% Similarity=0.311 Sum_probs=94.6
Q ss_pred eEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccccccccCCCCCccccccCCchhHHHhhCCCeEEEEccc
Q 002012 695 SFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEI 774 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~~~~~Vl~lDEi 774 (982)
+++|+||||+|||++++++++.. +..+ +..... ..+..+ ...+|+||||
T Consensus 46 ~l~l~Gp~G~GKThLl~a~~~~~---~~~~--~~~~~~------------------------~~~~~~--~~d~lliDdi 94 (214)
T PRK06620 46 TLLIKGPSSSGKTYLTKIWQNLS---NAYI--IKDIFF------------------------NEEILE--KYNAFIIEDI 94 (214)
T ss_pred eEEEECCCCCCHHHHHHHHHhcc---CCEE--cchhhh------------------------chhHHh--cCCEEEEecc
Confidence 59999999999999999988764 2111 110000 001111 2359999999
Q ss_pred cccCH-HHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChH
Q 002012 775 EKAHQ-DVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPE 853 (982)
Q Consensus 775 dkl~~-~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ 853 (982)
|.+.. .+...+..+.|.| ..+|+|++..+..+ .+ |+
T Consensus 95 ~~~~~~~lf~l~N~~~e~g--------------~~ilits~~~p~~l----------------------------~l-~~ 131 (214)
T PRK06620 95 ENWQEPALLHIFNIINEKQ--------------KYLLLTSSDKSRNF----------------------------TL-PD 131 (214)
T ss_pred ccchHHHHHHHHHHHHhcC--------------CEEEEEcCCCcccc----------------------------ch-HH
Confidence 97643 2333333334543 24556655433211 14 78
Q ss_pred HHhcccc--ccccCCCChhHHHHHHHHHHHHHHHHHHhCCCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHHH
Q 002012 854 FLNRIDE--YIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQL 925 (982)
Q Consensus 854 ll~Rid~--ii~F~pl~~~~l~~il~~~l~~~~~~~~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~ 925 (982)
+.+|+.. ++.+.|++.+++..++...+.. .+ +.++++++++|+.+. +. .+|.+.+.++.+
T Consensus 132 L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~-------~~--l~l~~ev~~~L~~~~-~~--d~r~l~~~l~~l 193 (214)
T PRK06620 132 LSSRIKSVLSILLNSPDDELIKILIFKHFSI-------SS--VTISRQIIDFLLVNL-PR--EYSKIIEILENI 193 (214)
T ss_pred HHHHHhCCceEeeCCCCHHHHHHHHHHHHHH-------cC--CCCCHHHHHHHHHHc-cC--CHHHHHHHHHHH
Confidence 8899942 7899999999998888877664 34 789999999999973 33 358888888873
No 389
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.99 E-value=2.2e-08 Score=102.28 Aligned_cols=192 Identities=21% Similarity=0.283 Sum_probs=134.6
Q ss_pred CCCCcccchHHHHHHHH----HhccCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccccccc
Q 002012 267 KLDPVIGRDDEIRRCIQ----ILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGTCY 342 (982)
Q Consensus 267 ~l~~liG~~~~i~~l~~----~L~~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~~~ 342 (982)
.+.+++|.+..-+.+++ .+...+.+|+||+|.-|||||++++++...+... +.++++++-.++.
T Consensus 58 ~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~-------glrLVEV~k~dl~----- 125 (287)
T COG2607 58 DLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADE-------GLRLVEVDKEDLA----- 125 (287)
T ss_pred CHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhc-------CCeEEEEcHHHHh-----
Confidence 44568887775555443 5555788999999999999999999999988554 6779999866665
Q ss_pred cccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCC------CeEEEEecCchhHhh-hh-
Q 002012 343 RGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRG------ELRCIGATTLNEYRN-YI- 414 (982)
Q Consensus 343 ~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g------~i~vI~at~~~~~~~-~~- 414 (982)
.+-.+++.++....+.|||+|++-- ..+ .+....|+.+|+.| +|.+-+|+|...... ++
T Consensus 126 ------~Lp~l~~~Lr~~~~kFIlFcDDLSF--e~g-----d~~yK~LKs~LeG~ve~rP~NVl~YATSNRRHLl~e~~~ 192 (287)
T COG2607 126 ------TLPDLVELLRARPEKFILFCDDLSF--EEG-----DDAYKALKSALEGGVEGRPANVLFYATSNRRHLLPEDMK 192 (287)
T ss_pred ------hHHHHHHHHhcCCceEEEEecCCCC--CCC-----chHHHHHHHHhcCCcccCCCeEEEEEecCCcccccHhhh
Confidence 4667888888878889999999853 112 34567799999743 788888888754221 11
Q ss_pred -------hcC--------hHHHhccc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHH-HHHHhhhhhccCCC
Q 002012 415 -------EKD--------PALERRFQ-QVFCDQPSVENTISILRGLRERYELHHGVKISDSALVS-AAVLADRYITERFL 477 (982)
Q Consensus 415 -------~~d--------~al~rRf~-~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~-~~~~s~r~i~~~~~ 477 (982)
+++ -+|..||. -+.|.+++.++..+|++++.++ +++.++++.+.. +...+.. .+...
T Consensus 193 dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~----~~l~~~~e~l~~eAl~WAt~--rg~RS 266 (287)
T COG2607 193 DNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKH----FGLDISDEELHAEALQWATT--RGGRS 266 (287)
T ss_pred hCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHHHHh--cCCCc
Confidence 111 23667997 7788888999999999998876 688887755544 3444331 23344
Q ss_pred cchhhHHHHHHH
Q 002012 478 PDKAIDLVDEAA 489 (982)
Q Consensus 478 p~~a~~lld~a~ 489 (982)
.+.|-++++.-.
T Consensus 267 GR~A~QF~~~~~ 278 (287)
T COG2607 267 GRVAWQFIRDLA 278 (287)
T ss_pred cHhHHHHHHHHH
Confidence 555555554443
No 390
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.99 E-value=1.7e-08 Score=111.91 Aligned_cols=148 Identities=14% Similarity=0.205 Sum_probs=103.8
Q ss_pred HHHHHHHHhccCCCCC-cEEeCCCCCcHHHHHHHHHHHhhcCCCCCC--------------CCCCeEEEEeccccccccc
Q 002012 277 EIRRCIQILSRRTKNN-PVIIGEPGVGKTAIAEGLAQRIVRGDVPET--------------LQNRKLISLDMASLVAGTC 341 (982)
Q Consensus 277 ~i~~l~~~L~~~~~~~-iLL~GppGvGKT~la~~la~~l~~~~~p~~--------------l~~~~v~~l~~~~l~~~~~ 341 (982)
.-+.+.+.+.++..+| .||.||+|+||+++|+.+|+.+.+...... .....++.+... .+.
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~---~~~- 85 (325)
T PRK06871 10 TYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPI---DNK- 85 (325)
T ss_pred HHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccc---cCC-
Confidence 3455666666655555 558899999999999999999987532110 111223333221 111
Q ss_pred ccccHHHHHHHHHHHHHhc---CCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhc--CCCeEEEEecCchhHhhhhhc
Q 002012 342 YRGDFEKRLKAVLKEVTKS---NGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLG--RGELRCIGATTLNEYRNYIEK 416 (982)
Q Consensus 342 ~~g~~e~~l~~l~~~~~~~---~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le--~g~i~vI~at~~~~~~~~~~~ 416 (982)
.-..+.++++.+.+... ++.-|++||++|.|. ..++|.|+..|| .+++.+|.+|+..+ .+
T Consensus 86 --~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~--------~~AaNaLLKtLEEPp~~~~fiL~t~~~~-----~l 150 (325)
T PRK06871 86 --DIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLT--------EAAANALLKTLEEPRPNTYFLLQADLSA-----AL 150 (325)
T ss_pred --CCCHHHHHHHHHHHhhccccCCceEEEEechhhhC--------HHHHHHHHHHhcCCCCCeEEEEEECChH-----hC
Confidence 11234455665555422 344699999999997 677888988888 46788888888887 78
Q ss_pred ChHHHhccceEEecCCCHHHHHHHHHH
Q 002012 417 DPALERRFQQVFCDQPSVENTISILRG 443 (982)
Q Consensus 417 d~al~rRf~~i~i~~Ps~~e~~~IL~~ 443 (982)
.|.++|||+.+.|.+|+.++....|..
T Consensus 151 lpTI~SRC~~~~~~~~~~~~~~~~L~~ 177 (325)
T PRK06871 151 LPTIYSRCQTWLIHPPEEQQALDWLQA 177 (325)
T ss_pred chHHHhhceEEeCCCCCHHHHHHHHHH
Confidence 999999999999999999988877764
No 391
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.99 E-value=4.8e-11 Score=111.73 Aligned_cols=108 Identities=24% Similarity=0.343 Sum_probs=60.6
Q ss_pred CcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEeccc-cc-----cccccc---ccHHHHHHHHHHHHHhcCC
Q 002012 292 NPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMAS-LV-----AGTCYR---GDFEKRLKAVLKEVTKSNG 362 (982)
Q Consensus 292 ~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~-l~-----~~~~~~---g~~e~~l~~l~~~~~~~~~ 362 (982)
|+||.|+||+|||++|+++|+.+ +..+..+.+.. +. +-.-|. +.++-.-..+|
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~----------~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif-------- 62 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSL----------GLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIF-------- 62 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHT----------T--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT---------
T ss_pred CEeeECCCccHHHHHHHHHHHHc----------CCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhh--------
Confidence 68999999999999999999998 66776665432 21 111010 11111001111
Q ss_pred CeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCC-------------CeEEEEecCchhHhhhhhcChHHHhccc
Q 002012 363 QIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRG-------------ELRCIGATTLNEYRNYIEKDPALERRFQ 425 (982)
Q Consensus 363 ~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g-------------~i~vI~at~~~~~~~~~~~d~al~rRf~ 425 (982)
.-|+++|||++.. ...+..|+++|+.+ .++||+|.|+.++...+.++.++.+||.
T Consensus 63 ~~ill~DEiNrap--------pktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF~ 130 (131)
T PF07726_consen 63 TNILLADEINRAP--------PKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRFM 130 (131)
T ss_dssp SSEEEEETGGGS---------HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTSS
T ss_pred hceeeecccccCC--------HHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhcccc
Confidence 1299999999976 56778888888754 3588999999999999999999999993
No 392
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=1.5e-09 Score=114.13 Aligned_cols=133 Identities=22% Similarity=0.380 Sum_probs=88.1
Q ss_pred hcccccchHHHHHHHHHHHHH--------hcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccc
Q 002012 662 HKRVIGQDIAVKSVADAIRRS--------RAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYM 733 (982)
Q Consensus 662 ~~~iiGq~~a~~~l~~~i~~~--------~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~ 733 (982)
++.+-|.-..+..+.+.|... +.|+ ..|. .++|+||||+|||.+|++++..+ +.+|+.+-.+++.
T Consensus 131 ~~~~ggl~~qirelre~ielpl~np~lf~rvgI---k~Pk-g~ll~GppGtGKTlla~~Vaa~m---g~nfl~v~ss~lv 203 (388)
T KOG0651|consen 131 FENVGGLFYQIRELREVIELPLTNPELFLRVGI---KPPK-GLLLYGPPGTGKTLLARAVAATM---GVNFLKVVSSALV 203 (388)
T ss_pred HHHhCChHHHHHHHHhheEeeccCchhccccCC---CCCc-eeEEeCCCCCchhHHHHHHHHhc---CCceEEeeHhhhh
Confidence 455667667777776665322 1122 2334 49999999999999999999998 7888888888774
Q ss_pred cccccccccCCCCCccccccCCchhHHHhhCCCeEEEEcccccc-----------CHHHHHHHHHhhhcCceecCCCcEE
Q 002012 734 EKHSVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEIEKA-----------HQDVFNILLQLLDDGRITDSQGRTV 802 (982)
Q Consensus 734 ~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~~~~~Vl~lDEidkl-----------~~~~~~~Ll~~le~g~~~d~~g~~~ 802 (982)
+. .+|.+..- .++.+...+..-.||||+||||.. +..+|..|..+++.-.=.|
T Consensus 204 ~k-----yiGEsaRl-----IRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd------ 267 (388)
T KOG0651|consen 204 DK-----YIGESARL-----IRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFD------ 267 (388)
T ss_pred hh-----hcccHHHH-----HHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccch------
Confidence 32 23332111 122344455566799999999975 4568888888887311111
Q ss_pred ecccEEEEEecCCCh
Q 002012 803 SFTNCVVIMTSNIGS 817 (982)
Q Consensus 803 ~~~~~iiI~tsn~~~ 817 (982)
...++-+|||+|...
T Consensus 268 ~l~rVk~ImatNrpd 282 (388)
T KOG0651|consen 268 TLHRVKTIMATNRPD 282 (388)
T ss_pred hcccccEEEecCCcc
Confidence 235678999999764
No 393
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.97 E-value=1e-08 Score=123.60 Aligned_cols=120 Identities=19% Similarity=0.237 Sum_probs=82.9
Q ss_pred eEEEEccchhhhhCCCCCchhhHHHHHHhhhcCC-----------------------CeEEEEecCchhHhhhhhcChHH
Q 002012 364 IILFIDELHTIIGAGNQSGAMDASNMLKPMLGRG-----------------------ELRCIGATTLNEYRNYIEKDPAL 420 (982)
Q Consensus 364 ~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g-----------------------~i~vI~at~~~~~~~~~~~d~al 420 (982)
.+|||||++.|. ...+..|+.+|+.+ ++++|+++++..+ ..++|.|
T Consensus 219 GtL~Ldei~~L~--------~~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~l---~~l~~~l 287 (608)
T TIGR00764 219 GVLYIDEIKTMP--------LEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDDL---EGMHPAL 287 (608)
T ss_pred CEEEEEChHhCC--------HHHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHHH---hhcCHHH
Confidence 489999999885 55667788877532 5688999998753 3689999
Q ss_pred Hhccc----eEEec--CC-CHHHHHHHHHHHHHHHhhh-cCCccChHHHHHHHHHhhhhhccCCC----cchhhHHHHHH
Q 002012 421 ERRFQ----QVFCD--QP-SVENTISILRGLRERYELH-HGVKISDSALVSAAVLADRYITERFL----PDKAIDLVDEA 488 (982)
Q Consensus 421 ~rRf~----~i~i~--~P-s~~e~~~IL~~~~~~~~~~-~~v~i~~~~l~~~~~~s~r~i~~~~~----p~~a~~lld~a 488 (982)
++||. .+.+. .| +.+.+..+++.+...+..+ .-..++++++..+++.+.|...++.. .++..+++.+|
T Consensus 288 ~~rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R~ag~r~~lsl~~R~L~~llR~A 367 (608)
T TIGR00764 288 RSRIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQRRAGRKDHLTLRLRELGGLVRAA 367 (608)
T ss_pred HHHhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHH
Confidence 99997 13332 23 4556666666555555443 23478999999999988876555543 56777788887
Q ss_pred HHHhhh
Q 002012 489 AAKLKM 494 (982)
Q Consensus 489 ~~~~~~ 494 (982)
...+..
T Consensus 368 ~~iA~~ 373 (608)
T TIGR00764 368 GDIAKS 373 (608)
T ss_pred HHHHHh
Confidence 655443
No 394
>PRK09087 hypothetical protein; Validated
Probab=98.96 E-value=1.2e-08 Score=108.24 Aligned_cols=152 Identities=16% Similarity=0.213 Sum_probs=99.4
Q ss_pred eEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccccccccCCCCCccccccCCchhHHHhhCCCeEEEEccc
Q 002012 695 SFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEI 774 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~~~~~Vl~lDEi 774 (982)
.++|+||+|+|||++++++++.. + ...++...+.. .+...+. .++|+||++
T Consensus 46 ~l~l~G~~GsGKThLl~~~~~~~---~--~~~i~~~~~~~---------------------~~~~~~~---~~~l~iDDi 96 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREKS---D--ALLIHPNEIGS---------------------DAANAAA---EGPVLIEDI 96 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHhc---C--CEEecHHHcch---------------------HHHHhhh---cCeEEEECC
Confidence 38999999999999999988753 2 22333322211 1111222 248999999
Q ss_pred cccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHH
Q 002012 775 EKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEF 854 (982)
Q Consensus 775 dkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l 854 (982)
+.+.. .+..|+.++..- .+ ....+|+|++.....+. .+.|++
T Consensus 97 ~~~~~-~~~~lf~l~n~~--~~--------~g~~ilits~~~p~~~~---------------------------~~~~dL 138 (226)
T PRK09087 97 DAGGF-DETGLFHLINSV--RQ--------AGTSLLMTSRLWPSSWN---------------------------VKLPDL 138 (226)
T ss_pred CCCCC-CHHHHHHHHHHH--Hh--------CCCeEEEECCCChHHhc---------------------------cccccH
Confidence 97742 244555555320 00 12457777775543221 135789
Q ss_pred Hhccc--cccccCCCChhHHHHHHHHHHHHHHHHHHhCCCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHHH
Q 002012 855 LNRID--EYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQL 925 (982)
Q Consensus 855 l~Rid--~ii~F~pl~~~~l~~il~~~l~~~~~~~~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~ 925 (982)
.+|+. .++.+.|++.+++.++++..++. .+ +.++++++++|+.+ +..+ .|.+..++.++
T Consensus 139 ~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~-------~~--~~l~~ev~~~La~~-~~r~--~~~l~~~l~~L 199 (226)
T PRK09087 139 KSRLKAATVVEIGEPDDALLSQVIFKLFAD-------RQ--LYVDPHVVYYLVSR-MERS--LFAAQTIVDRL 199 (226)
T ss_pred HHHHhCCceeecCCCCHHHHHHHHHHHHHH-------cC--CCCCHHHHHHHHHH-hhhh--HHHHHHHHHHH
Confidence 99995 48999999999999999988875 33 78999999999997 3333 35666666554
No 395
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.95 E-value=7.6e-08 Score=105.46 Aligned_cols=183 Identities=19% Similarity=0.182 Sum_probs=109.1
Q ss_pred CCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEe-----ccccc------cccccccc----HHHHHHHH
Q 002012 289 TKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLD-----MASLV------AGTCYRGD----FEKRLKAV 353 (982)
Q Consensus 289 ~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~-----~~~l~------~~~~~~g~----~e~~l~~l 353 (982)
....++|+||+|+||||+++.++..+..+.+ .+..+. ...+. -|....+. ....+...
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~-------~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~ 114 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRLDQERV-------VAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDF 114 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHhcCCCCe-------EEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHH
Confidence 4446889999999999999999988743211 111111 00000 01111121 11223333
Q ss_pred HHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhc-----CCCeEEEEecCchhHhhhhhc--ChHHHhccc-
Q 002012 354 LKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLG-----RGELRCIGATTLNEYRNYIEK--DPALERRFQ- 425 (982)
Q Consensus 354 ~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le-----~g~i~vI~at~~~~~~~~~~~--d~al~rRf~- 425 (982)
+......+...+|+|||+|.+. .+..+.|..+.+ ...+.+|.++.+. +...+.. ...+.+|+.
T Consensus 115 l~~~~~~~~~~vliiDe~~~l~--------~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~ 185 (269)
T TIGR03015 115 LIEQFAAGKRALLVVDEAQNLT--------PELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIA 185 (269)
T ss_pred HHHHHhCCCCeEEEEECcccCC--------HHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheee
Confidence 3333334567799999999874 223344443332 2234556666554 3333221 235777864
Q ss_pred eEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCCcchhhHHHHHHHHHhh
Q 002012 426 QVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLPDKAIDLVDEAAAKLK 493 (982)
Q Consensus 426 ~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~p~~a~~lld~a~~~~~ 493 (982)
.+.++..+.+++..++..............+++++++.+++.|.++ |.....+++.+...+.
T Consensus 186 ~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~------p~~i~~l~~~~~~~a~ 247 (269)
T TIGR03015 186 SCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGI------PRLINILCDRLLLSAF 247 (269)
T ss_pred eeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCc------ccHHHHHHHHHHHHHH
Confidence 7888889999999999887776543334578999999999998754 5666677776665543
No 396
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.95 E-value=5.5e-09 Score=124.16 Aligned_cols=204 Identities=16% Similarity=0.182 Sum_probs=119.8
Q ss_pred CCcccchHHHHHHHHHhccCC------------CCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccc
Q 002012 269 DPVIGRDDEIRRCIQILSRRT------------KNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASL 336 (982)
Q Consensus 269 ~~liG~~~~i~~l~~~L~~~~------------~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l 336 (982)
..+.|++.....++-.|..+. ..|+||+|+||||||++|+.+++....... ..+. ..++..+
T Consensus 203 p~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~---~~~~---~~~~~~l 276 (509)
T smart00350 203 PSIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVY---TTGK---GSSAVGL 276 (509)
T ss_pred ccccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceE---cCCC---CCCcCCc
Confidence 357888876555555543321 238999999999999999999987632100 0000 0011112
Q ss_pred cccc---cccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCC---------------C
Q 002012 337 VAGT---CYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRG---------------E 398 (982)
Q Consensus 337 ~~~~---~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g---------------~ 398 (982)
.... ...|++.-.- .. +..+++ .+++|||++.+. ...+..|..+|+.+ +
T Consensus 277 ~~~~~~~~~~g~~~~~~-G~---l~~A~~-Gil~iDEi~~l~--------~~~q~~L~e~me~~~i~i~k~G~~~~l~~~ 343 (509)
T smart00350 277 TAAVTRDPETREFTLEG-GA---LVLADN-GVCCIDEFDKMD--------DSDRTAIHEAMEQQTISIAKAGITTTLNAR 343 (509)
T ss_pred cccceEccCcceEEecC-cc---EEecCC-CEEEEechhhCC--------HHHHHHHHHHHhcCEEEEEeCCEEEEecCC
Confidence 1100 0111111000 00 111233 489999999986 45667778887643 4
Q ss_pred eEEEEecCchhH--------hhhhhcChHHHhccc--eEEecCCCHHHHHHHHHHHHHHHhh-------hcCCccChHHH
Q 002012 399 LRCIGATTLNEY--------RNYIEKDPALERRFQ--QVFCDQPSVENTISILRGLRERYEL-------HHGVKISDSAL 461 (982)
Q Consensus 399 i~vI~at~~~~~--------~~~~~~d~al~rRf~--~i~i~~Ps~~e~~~IL~~~~~~~~~-------~~~v~i~~~~l 461 (982)
+.+|+|+|+.+- ...+.+++++.+||+ .+..+.|+.+....|++++...+.. .....++.+.+
T Consensus 344 ~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~l 423 (509)
T smart00350 344 CSVLAAANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQEFL 423 (509)
T ss_pred cEEEEEeCCCCcccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHHHH
Confidence 578999998641 112479999999997 4455678888888888877654321 11134677777
Q ss_pred HHHHHHhhhhhccCCCcchhhHHHHHHHHHh
Q 002012 462 VSAAVLADRYITERFLPDKAIDLVDEAAAKL 492 (982)
Q Consensus 462 ~~~~~~s~r~i~~~~~p~~a~~lld~a~~~~ 492 (982)
.....++.+|+.- .+++.+.+.+-......
T Consensus 424 ~~yi~~ar~~~~P-~ls~~~~~~i~~~y~~~ 453 (509)
T smart00350 424 RKYIAYAREKIKP-KLSEEAAEKLVKAYVDL 453 (509)
T ss_pred HHHHHHHHhcCCC-CCCHHHHHHHHHHHHHh
Confidence 7777777764322 24566666555444333
No 397
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.94 E-value=1.7e-08 Score=112.60 Aligned_cols=151 Identities=17% Similarity=0.181 Sum_probs=101.2
Q ss_pred HHHHHHhccCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCC-C-C-------------CCCCCeEEEEeccccc------
Q 002012 279 RRCIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDV-P-E-------------TLQNRKLISLDMASLV------ 337 (982)
Q Consensus 279 ~~l~~~L~~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~-p-~-------------~l~~~~v~~l~~~~l~------ 337 (982)
+++... ..+-++.+||+||+|+||+++|+.+|+.+.+... + . ......++.+......
T Consensus 11 ~~l~~~-~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~ 89 (342)
T PRK06964 11 NRLQAL-RARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGA 89 (342)
T ss_pred HHHHHh-cCCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEeccccccccccc
Confidence 444443 3344456778999999999999999999987541 1 0 0111223333222110
Q ss_pred -----------cccc---c-cccHHHHHHHHHHHHHhc---CCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhc--CC
Q 002012 338 -----------AGTC---Y-RGDFEKRLKAVLKEVTKS---NGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLG--RG 397 (982)
Q Consensus 338 -----------~~~~---~-~g~~e~~l~~l~~~~~~~---~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le--~g 397 (982)
.|.+ . ..-..+.++.+.+.+... ++.-|++||++|.|. ..+.|.|+..+| ..
T Consensus 90 ~~~~~~~~~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~--------~~AaNaLLKtLEEPp~ 161 (342)
T PRK06964 90 ADEAKEADADEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALN--------VAAANALLKTLEEPPP 161 (342)
T ss_pred ccccccchhhcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcC--------HHHHHHHHHHhcCCCc
Confidence 0000 0 011234455665555422 345699999999997 677888888888 46
Q ss_pred CeEEEEecCchhHhhhhhcChHHHhccceEEecCCCHHHHHHHHHH
Q 002012 398 ELRCIGATTLNEYRNYIEKDPALERRFQQVFCDQPSVENTISILRG 443 (982)
Q Consensus 398 ~i~vI~at~~~~~~~~~~~d~al~rRf~~i~i~~Ps~~e~~~IL~~ 443 (982)
.+.+|.+|+..+ .+.|.++|||+.+.|..|+.++..+.|..
T Consensus 162 ~t~fiL~t~~~~-----~LLpTI~SRcq~i~~~~~~~~~~~~~L~~ 202 (342)
T PRK06964 162 GTVFLLVSARID-----RLLPTILSRCRQFPMTVPAPEAAAAWLAA 202 (342)
T ss_pred CcEEEEEECChh-----hCcHHHHhcCEEEEecCCCHHHHHHHHHH
Confidence 788999998888 79999999999999999999988887753
No 398
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=98.93 E-value=1.8e-09 Score=101.05 Aligned_cols=108 Identities=28% Similarity=0.463 Sum_probs=76.4
Q ss_pred HHHHHHHhhhcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCC--CceEEEecc
Q 002012 653 KLVMLEEVLHKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTE--NALVRIDMS 730 (982)
Q Consensus 653 ~l~~l~~~l~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~--~~~v~i~~s 730 (982)
.+..|+..|...++||+-|.+.|.++|+..... ..|++|++ +.|.||||||||.+++.||+.+|..+ .+++..=.+
T Consensus 15 ~~~~L~~~L~~~l~GQhla~~~v~~ai~~~l~~-~~p~KpLV-lSfHG~tGtGKn~v~~liA~~ly~~G~~S~~V~~f~~ 92 (127)
T PF06309_consen 15 NITGLEKDLQRNLFGQHLAVEVVVNAIKGHLAN-PNPRKPLV-LSFHGWTGTGKNFVSRLIAEHLYKSGMKSPFVHQFIA 92 (127)
T ss_pred CHHHHHHHHHHHccCcHHHHHHHHHHHHHHHcC-CCCCCCEE-EEeecCCCCcHHHHHHHHHHHHHhcccCCCceeeecc
Confidence 466788999999999999999999999987654 46899986 99999999999999999999998654 334332211
Q ss_pred ccccccccccccCCCCCccc-cc--cCCchhHHHhhCCCeEEEE
Q 002012 731 EYMEKHSVSRLVGAPPGYVG-YE--EGGQLTEVVRRRPYSVVLF 771 (982)
Q Consensus 731 ~~~~~~~~~~l~g~~~g~vg-~~--~~~~l~~~l~~~~~~Vl~l 771 (982)
..--++ ...+. |. -...+.+.++.++.++++|
T Consensus 93 ~~hFP~---------~~~v~~Yk~~L~~~I~~~v~~C~rslFIF 127 (127)
T PF06309_consen 93 THHFPH---------NSNVDEYKEQLKSWIRGNVSRCPRSLFIF 127 (127)
T ss_pred cccCCC---------chHHHHHHHHHHHHHHHHHHhCCcCeeeC
Confidence 110000 01110 11 1134677788888888775
No 399
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.93 E-value=8.9e-09 Score=107.49 Aligned_cols=112 Identities=24% Similarity=0.396 Sum_probs=86.4
Q ss_pred eEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHH
Q 002012 767 SVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELA 846 (982)
Q Consensus 767 ~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 846 (982)
+||||||++.++-+.+..|..++|+. +. -++|++||.+...+... +..+
T Consensus 290 GVLFIDEvHMLDIEcFsFlNrAlE~d-----------~~-PiiimaTNrgit~iRGT---n~~S---------------- 338 (454)
T KOG2680|consen 290 GVLFIDEVHMLDIECFSFLNRALEND-----------MA-PIIIMATNRGITRIRGT---NYRS---------------- 338 (454)
T ss_pred ceEEEeeehhhhhHHHHHHHHHhhhc-----------cC-cEEEEEcCCceEEeecC---CCCC----------------
Confidence 49999999999999999999999962 22 57889999876544332 0000
Q ss_pred HhhcChHHHhccccccccCCCChhHHHHHHHHHHHHHHHHHHhCCCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHH
Q 002012 847 RQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQ 924 (982)
Q Consensus 847 ~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~~~~~~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~ 924 (982)
-..++-+|++|+ .+|.-.|++++++++|+...+.. .. +.++++|+++|...+... +|+..++-
T Consensus 339 phGiP~D~lDR~-lII~t~py~~~d~~~IL~iRc~E-------Ed--v~m~~~A~d~Lt~i~~~t-----sLRYai~L 401 (454)
T KOG2680|consen 339 PHGIPIDLLDRM-LIISTQPYTEEDIKKILRIRCQE-------ED--VEMNPDALDLLTKIGEAT-----SLRYAIHL 401 (454)
T ss_pred CCCCcHHHhhhh-heeecccCcHHHHHHHHHhhhhh-------hc--cccCHHHHHHHHHhhhhh-----hHHHHHHH
Confidence 134788999999 79999999999999999988765 33 789999999999865442 56666664
No 400
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.92 E-value=1.8e-08 Score=111.72 Aligned_cols=95 Identities=20% Similarity=0.153 Sum_probs=67.4
Q ss_pred eEEEEccchhhhhCCCCCchhhHHHHHHhhhcCCC-------------eEEEEecCchhHhhh--hhcChHHHhccceEE
Q 002012 364 IILFIDELHTIIGAGNQSGAMDASNMLKPMLGRGE-------------LRCIGATTLNEYRNY--IEKDPALERRFQQVF 428 (982)
Q Consensus 364 ~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g~-------------i~vI~at~~~~~~~~--~~~d~al~rRf~~i~ 428 (982)
.|+-|+|+.... .++.+-|+.+++.+. ..+|+++|+.+|..+ .+...+|++||..|.
T Consensus 238 Gi~~f~Ei~K~~--------~~~l~~LL~~~qE~~v~~~~~~~~~~~d~liia~sNe~e~~~~~~~k~~eaf~dR~~~i~ 309 (361)
T smart00763 238 GILEFVEMFKAD--------IKFLHPLLTATQEGNIKGTGGFAMIPIDGLIIAHSNESEWQRFKSNKKNEALLDRIIKVK 309 (361)
T ss_pred ceEEEeehhcCC--------HHHHHHHhhhhhcceEecCCcccccccceEEEEeCCHHHHhhhhccccchhhhhceEEEe
Confidence 367777777653 667788888887543 367999999999765 456899999999999
Q ss_pred ecCC-CHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHH
Q 002012 429 CDQP-SVENTISILRGLRERYELHHGVKISDSALVSAAVL 467 (982)
Q Consensus 429 i~~P-s~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~ 467 (982)
++.| +.++-.+|.+.....-. ..++.+.+-+++.++.+
T Consensus 310 vpY~l~~~~E~~Iy~k~~~~s~-~~~~~~aP~~le~aa~~ 348 (361)
T smart00763 310 VPYCLRVSEEAQIYEKLLRNSD-LTEAHIAPHTLEMAALF 348 (361)
T ss_pred CCCcCCHHHHHHHHHHHhccCc-CcccccCchHHHHHHHH
Confidence 9998 57777888876665411 12455666666555544
No 401
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=8.1e-09 Score=125.31 Aligned_cols=121 Identities=27% Similarity=0.426 Sum_probs=94.7
Q ss_pred CcccchHHHHHHHHHhccC--------CCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEeccccc----
Q 002012 270 PVIGRDDEIRRCIQILSRR--------TKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLV---- 337 (982)
Q Consensus 270 ~liG~~~~i~~l~~~L~~~--------~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~---- 337 (982)
.|+||++.+..+.+++++. +...++|.||.|||||-+|++||..+... ...++.+||+++.
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgs-------e~~~IriDmse~~evsk 635 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGS-------EENFIRLDMSEFQEVSK 635 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCC-------ccceEEechhhhhhhhh
Confidence 3999999999999988651 23457899999999999999999999443 7789999998632
Q ss_pred ---ccccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCCCe-------------EE
Q 002012 338 ---AGTCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRGEL-------------RC 401 (982)
Q Consensus 338 ---~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g~i-------------~v 401 (982)
+...|+|..+. +.+.+.....+.+|++||||+... .++++.|++++++|++ +|
T Consensus 636 ligsp~gyvG~e~g---g~LteavrrrP~sVVLfdeIEkAh--------~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~ 704 (898)
T KOG1051|consen 636 LIGSPPGYVGKEEG---GQLTEAVKRRPYSVVLFEEIEKAH--------PDVLNILLQLLDRGRLTDSHGREVDFKNAIF 704 (898)
T ss_pred ccCCCcccccchhH---HHHHHHHhcCCceEEEEechhhcC--------HHHHHHHHHHHhcCccccCCCcEeeccceEE
Confidence 34567777665 344444445788999999999865 7899999999998754 77
Q ss_pred EEecCch
Q 002012 402 IGATTLN 408 (982)
Q Consensus 402 I~at~~~ 408 (982)
|+|.|-.
T Consensus 705 IMTsn~~ 711 (898)
T KOG1051|consen 705 IMTSNVG 711 (898)
T ss_pred EEecccc
Confidence 7777654
No 402
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=2.2e-09 Score=119.71 Aligned_cols=177 Identities=24% Similarity=0.399 Sum_probs=115.6
Q ss_pred eEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccccccccCCCCCccccccCC--chhHHHh--------hC
Q 002012 695 SFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRLVGAPPGYVGYEEGG--QLTEVVR--------RR 764 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l~g~~~g~vg~~~~~--~l~~~l~--------~~ 764 (982)
.+||+||||||||.+||.|.+.|...+.. .+|..++.++ |||.++.+ .|+.... .+
T Consensus 258 GiLLyGPPGTGKTLiARqIGkMLNArePK--IVNGPeIL~K------------YVGeSE~NvR~LFaDAEeE~r~~g~~S 323 (744)
T KOG0741|consen 258 GILLYGPPGTGKTLIARQIGKMLNAREPK--IVNGPEILNK------------YVGESEENVRKLFADAEEEQRRLGANS 323 (744)
T ss_pred eEEEECCCCCChhHHHHHHHHHhcCCCCc--ccCcHHHHHH------------hhcccHHHHHHHHHhHHHHHHhhCccC
Confidence 39999999999999999999999543332 3577776433 66655543 2322222 12
Q ss_pred CCeEEEEcccccc-------------CHHHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCChHHHHHhhhhcccch
Q 002012 765 PYSVVLFDEIEKA-------------HQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSK 831 (982)
Q Consensus 765 ~~~Vl~lDEidkl-------------~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~i~~~~~~~~~~~ 831 (982)
.--||+|||||.. |..+.|.||.-||. . -.+.|+.+|.-||...- |-+
T Consensus 324 gLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDG-V--------eqLNNILVIGMTNR~Dl-IDE--------- 384 (744)
T KOG0741|consen 324 GLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDG-V--------EQLNNILVIGMTNRKDL-IDE--------- 384 (744)
T ss_pred CceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhccc-H--------HhhhcEEEEeccCchhh-HHH---------
Confidence 2349999999976 45699999999983 1 13468999999986321 111
Q ss_pred HHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHHHHHHHHHhCC-CCccCCHHHHHHHHhcCCC
Q 002012 832 EAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKK-IDLHYTKEAVTLLGILGFD 910 (982)
Q Consensus 832 ~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~~~~~~~~~-~~l~i~~~a~~~L~~~~~~ 910 (982)
..++| +|+...+...-+++.-..+|++.+-+++. ..+ ..-.++ ++.|+.. .
T Consensus 385 ----------------ALLRP---GRlEVqmEIsLPDE~gRlQIl~IHT~rMr----e~~~l~~dVd---l~elA~l--T 436 (744)
T KOG0741|consen 385 ----------------ALLRP---GRLEVQMEISLPDEKGRLQILKIHTKRMR----ENNKLSADVD---LKELAAL--T 436 (744)
T ss_pred ----------------HhcCC---CceEEEEEEeCCCccCceEEEEhhhhhhh----hcCCCCCCcC---HHHHHHH--h
Confidence 11455 89988888888898888888877766533 222 122222 3444442 4
Q ss_pred CCCCchHHHHHHHHHHHHHHHH
Q 002012 911 PNFGARPVKRVIQQLVENEIAV 932 (982)
Q Consensus 911 ~~~gaR~L~~~i~~~l~~~la~ 932 (982)
.||.+.+|.-+|+...-.++-+
T Consensus 437 KNfSGAEleglVksA~S~A~nR 458 (744)
T KOG0741|consen 437 KNFSGAELEGLVKSAQSFAMNR 458 (744)
T ss_pred cCCchhHHHHHHHHHHHHHHHh
Confidence 6787788988888855555544
No 403
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.88 E-value=7e-08 Score=113.81 Aligned_cols=186 Identities=19% Similarity=0.289 Sum_probs=123.0
Q ss_pred CCCCcccchHHHHHHHHHhcc--CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccccc---c
Q 002012 267 KLDPVIGRDDEIRRCIQILSR--RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGT---C 341 (982)
Q Consensus 267 ~l~~liG~~~~i~~l~~~L~~--~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~---~ 341 (982)
.+..++|....++.+...+.+ ....+++++|++||||+++|+.+...... .+.+++.+||+.+.... .
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~-------~~~~~v~v~c~~~~~~~~~~~ 209 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLSDR-------KDKRFVAINCAAIPENLLESE 209 (445)
T ss_pred cccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhCCc-------CCCCeEEEECCCCChHHHHHH
Confidence 456789999888777766543 35568999999999999999999876522 25688999988764210 0
Q ss_pred ----ccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCC-------------CeEEEEe
Q 002012 342 ----YRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRG-------------ELRCIGA 404 (982)
Q Consensus 342 ----~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g-------------~i~vI~a 404 (982)
..|.+..........+...+ +.+||||||+.|. ..++..|..+++.+ ++++|++
T Consensus 210 lfg~~~~~~~~~~~~~~g~~~~a~-~gtl~l~~i~~l~--------~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~ 280 (445)
T TIGR02915 210 LFGYEKGAFTGAVKQTLGKIEYAH-GGTLFLDEIGDLP--------LNLQAKLLRFLQERVIERLGGREEIPVDVRIVCA 280 (445)
T ss_pred hcCCCCCCcCCCccCCCCceeECC-CCEEEEechhhCC--------HHHHHHHHHHHhhCeEEeCCCCceeeeceEEEEe
Confidence 00000000000000111223 3489999999996 66777888888643 4689999
Q ss_pred cCchhHh--hhhhcChHHHhccceEEecCCC----HHHHHHHHHHHHHHHhhhcC---CccChHHHHHHHHHh
Q 002012 405 TTLNEYR--NYIEKDPALERRFQQVFCDQPS----VENTISILRGLRERYELHHG---VKISDSALVSAAVLA 468 (982)
Q Consensus 405 t~~~~~~--~~~~~d~al~rRf~~i~i~~Ps----~~e~~~IL~~~~~~~~~~~~---v~i~~~~l~~~~~~s 468 (982)
|+.+.-. ..-...+.|..|+..+.+..|+ .+|+..+++.++.++...++ ..++++++..+..+.
T Consensus 281 ~~~~l~~~~~~~~~~~~L~~~l~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~ 353 (445)
T TIGR02915 281 TNQDLKRMIAEGTFREDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHA 353 (445)
T ss_pred cCCCHHHHHHcCCccHHHHHHhccceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhCC
Confidence 9876421 1123567788888767777775 45666677778777766544 468999999888774
No 404
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.87 E-value=4.7e-08 Score=108.07 Aligned_cols=149 Identities=15% Similarity=0.140 Sum_probs=103.0
Q ss_pred HHHHHHHHHhccCCCCC-cEEeCCCCCcHHHHHHHHHHHhhcCCCCCC-------------CCCCeEEEEeccccccccc
Q 002012 276 DEIRRCIQILSRRTKNN-PVIIGEPGVGKTAIAEGLAQRIVRGDVPET-------------LQNRKLISLDMASLVAGTC 341 (982)
Q Consensus 276 ~~i~~l~~~L~~~~~~~-iLL~GppGvGKT~la~~la~~l~~~~~p~~-------------l~~~~v~~l~~~~l~~~~~ 341 (982)
+.-+++...+.++..+| +||+||.|+||+++|+.+|+.+.+.+.+.. .....++.+.... .+ +
T Consensus 10 ~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~--~~-~ 86 (319)
T PRK06090 10 PVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK--EG-K 86 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc--CC-C
Confidence 34456666666655555 678899999999999999999987642210 1122344443211 01 0
Q ss_pred ccccHHHHHHHHHHHHHh---cCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhc--CCCeEEEEecCchhHhhhhhc
Q 002012 342 YRGDFEKRLKAVLKEVTK---SNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLG--RGELRCIGATTLNEYRNYIEK 416 (982)
Q Consensus 342 ~~g~~e~~l~~l~~~~~~---~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le--~g~i~vI~at~~~~~~~~~~~ 416 (982)
. -..+.++.+.+.+.. .++.-|++||++|.|. ..++|.|+..+| ..++.+|..|+..+ .+
T Consensus 87 ~--I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~--------~~AaNaLLKtLEEPp~~t~fiL~t~~~~-----~l 151 (319)
T PRK06090 87 S--ITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMN--------ESASNALLKTLEEPAPNCLFLLVTHNQK-----RL 151 (319)
T ss_pred c--CCHHHHHHHHHHHhhCcccCCceEEEecchhhhC--------HHHHHHHHHHhcCCCCCeEEEEEECChh-----hC
Confidence 0 112334455444432 2445699999999997 677888888888 45788898888887 78
Q ss_pred ChHHHhccceEEecCCCHHHHHHHHH
Q 002012 417 DPALERRFQQVFCDQPSVENTISILR 442 (982)
Q Consensus 417 d~al~rRf~~i~i~~Ps~~e~~~IL~ 442 (982)
-|.++|||+.+.|..|+.++..+.|.
T Consensus 152 LpTI~SRCq~~~~~~~~~~~~~~~L~ 177 (319)
T PRK06090 152 LPTIVSRCQQWVVTPPSTAQAMQWLK 177 (319)
T ss_pred hHHHHhcceeEeCCCCCHHHHHHHHH
Confidence 99999999999999999988877764
No 405
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.87 E-value=5.7e-08 Score=107.84 Aligned_cols=159 Identities=24% Similarity=0.292 Sum_probs=100.9
Q ss_pred CCCcccchHHHHHHHHHhccCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecc-------------
Q 002012 268 LDPVIGRDDEIRRCIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMA------------- 334 (982)
Q Consensus 268 l~~liG~~~~i~~l~~~L~~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~------------- 334 (982)
|.-++|++.--..++.-.-...-.++|+-|+.|+||||++++|+..|....+- .||++- +|+.
T Consensus 16 f~aivGqd~lk~aL~l~av~P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V---~gc~f~-cdP~~P~~~c~~c~~k~ 91 (423)
T COG1239 16 FTAIVGQDPLKLALGLNAVDPQIGGALIAGEKGTAKSTLARALADLLPEIEVV---IGCPFN-CDPDDPEEMCDECRAKG 91 (423)
T ss_pred hhhhcCchHHHHHHhhhhcccccceeEEecCCCccHHHHHHHHHHhCCcccee---cCCCCC-CCCCChhhhhHHHHhhc
Confidence 44578887755544443334566789999999999999999999987543210 011100 0000
Q ss_pred ----ccccc-------ccccccHHHHH------HHHHH---------HHHhcCCCeEEEEccchhhhhCCCCCchhhHHH
Q 002012 335 ----SLVAG-------TCYRGDFEKRL------KAVLK---------EVTKSNGQIILFIDELHTIIGAGNQSGAMDASN 388 (982)
Q Consensus 335 ----~l~~~-------~~~~g~~e~~l------~~l~~---------~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~ 388 (982)
.+... ..-.|.++.++ .+.++ .+-+.+++ ||||||+..|. ..+++
T Consensus 92 ~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRG-IlYvDEvnlL~--------d~lvd 162 (423)
T COG1239 92 DELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRG-ILYVDEVNLLD--------DHLVD 162 (423)
T ss_pred cccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCC-EEEEecccccc--------HHHHH
Confidence 00000 00112222221 11111 11122433 99999999885 56888
Q ss_pred HHHhhhcCC---------------CeEEEEecCchhHhhhhhcChHHHhccc-eEEecCC-CHHHHHHHHHH
Q 002012 389 MLKPMLGRG---------------ELRCIGATTLNEYRNYIEKDPALERRFQ-QVFCDQP-SVENTISILRG 443 (982)
Q Consensus 389 ~L~~~le~g---------------~i~vI~at~~~~~~~~~~~d~al~rRf~-~i~i~~P-s~~e~~~IL~~ 443 (982)
.|+.+++.| ++.+|||+|+++- ++-|.|+.||. .|.+..| +.+++.+|+++
T Consensus 163 ~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeG----eLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r 230 (423)
T COG1239 163 ALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEG----ELRPQLLDRFGLEVDTHYPLDLEERVEIIRR 230 (423)
T ss_pred HHHHHHHhCCceeeeCceeeccCccEEEEeecCcccc----ccchhhHhhhcceeeccCCCCHHHHHHHHHH
Confidence 999998765 5699999999863 78999999996 8888887 58888888854
No 406
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.85 E-value=1.2e-08 Score=119.62 Aligned_cols=154 Identities=18% Similarity=0.214 Sum_probs=93.3
Q ss_pred CCCCcccchHHHHHHHHHhccCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCC------------------CCeE
Q 002012 267 KLDPVIGRDDEIRRCIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQ------------------NRKL 328 (982)
Q Consensus 267 ~l~~liG~~~~i~~l~~~L~~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~------------------~~~v 328 (982)
.|.+++|++..++.+...+. ...|++|+||||+|||++++.++..+........+. ..++
T Consensus 190 d~~dv~Gq~~~~~al~~aa~--~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g~~~~~~~~~~~Pf 267 (499)
T TIGR00368 190 DLKDIKGQQHAKRALEIAAA--GGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVGKLIDRKQIKQRPF 267 (499)
T ss_pred CHHHhcCcHHHHhhhhhhcc--CCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchhhhccccccccCCc
Confidence 67889999887766555543 456899999999999999999997653221111111 1122
Q ss_pred EEEecccccccccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCC-----------
Q 002012 329 ISLDMASLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRG----------- 397 (982)
Q Consensus 329 ~~l~~~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g----------- 397 (982)
...+.+...... ..|....+ .. .+...++ .+|||||++.+. ..+++.|.+.|+.+
T Consensus 268 ~~p~~s~s~~~~-~ggg~~~~-pG---~i~lA~~-GvLfLDEi~e~~--------~~~~~~L~~~LE~~~v~i~r~g~~~ 333 (499)
T TIGR00368 268 RSPHHSASKPAL-VGGGPIPL-PG---EISLAHN-GVLFLDELPEFK--------RSVLDALREPIEDGSISISRASAKI 333 (499)
T ss_pred cccccccchhhh-hCCccccc-hh---hhhccCC-CeEecCChhhCC--------HHHHHHHHHHHHcCcEEEEecCcce
Confidence 211111100000 00100000 01 1222233 499999999885 67888999988765
Q ss_pred ----CeEEEEecCchhHhh------------------hhhcChHHHhccc-eEEecCCCHHH
Q 002012 398 ----ELRCIGATTLNEYRN------------------YIEKDPALERRFQ-QVFCDQPSVEN 436 (982)
Q Consensus 398 ----~i~vI~at~~~~~~~------------------~~~~d~al~rRf~-~i~i~~Ps~~e 436 (982)
++++|+++|+.+... ...+...|++||+ .+.++.++.++
T Consensus 334 ~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~~ 395 (499)
T TIGR00368 334 FYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPEK 395 (499)
T ss_pred eccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHHH
Confidence 468999999753111 2257899999998 67777766543
No 407
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.84 E-value=7e-09 Score=112.91 Aligned_cols=150 Identities=17% Similarity=0.330 Sum_probs=93.9
Q ss_pred HHHHHhccCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccccccccccHHHHHHHHHHHHH-
Q 002012 280 RCIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGTCYRGDFEKRLKAVLKEVT- 358 (982)
Q Consensus 280 ~l~~~L~~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~~~~g~~e~~l~~l~~~~~- 358 (982)
.+++.+.. .+.++||+||+|||||++++.+-+.+... ..-+..++++..... ..+..+++...
T Consensus 24 ~ll~~l~~-~~~pvLl~G~~GtGKT~li~~~l~~l~~~-------~~~~~~~~~s~~Tts--------~~~q~~ie~~l~ 87 (272)
T PF12775_consen 24 YLLDLLLS-NGRPVLLVGPSGTGKTSLIQNFLSSLDSD-------KYLVITINFSAQTTS--------NQLQKIIESKLE 87 (272)
T ss_dssp HHHHHHHH-CTEEEEEESSTTSSHHHHHHHHHHCSTTC-------CEEEEEEES-TTHHH--------HHHHHCCCTTEC
T ss_pred HHHHHHHH-cCCcEEEECCCCCchhHHHHhhhccCCcc-------ccceeEeeccCCCCH--------HHHHHHHhhcEE
Confidence 34444443 46689999999999999998876544211 223445665543321 11222221100
Q ss_pred h---------cCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCC--------------CeEEEEecCchhHhhhhh
Q 002012 359 K---------SNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRG--------------ELRCIGATTLNEYRNYIE 415 (982)
Q Consensus 359 ~---------~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g--------------~i~vI~at~~~~~~~~~~ 415 (982)
. .++.+|+||||++.-..+ ..|++...++|+++++.| ++.+|+++++.. +...
T Consensus 88 k~~~~~~gP~~~k~lv~fiDDlN~p~~d--~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~--Gr~~ 163 (272)
T PF12775_consen 88 KRRGRVYGPPGGKKLVLFIDDLNMPQPD--KYGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTG--GRNP 163 (272)
T ss_dssp ECTTEEEEEESSSEEEEEEETTT-S-----TTS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTT--T--S
T ss_pred cCCCCCCCCCCCcEEEEEecccCCCCCC--CCCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCC--CCCC
Confidence 0 134579999999975433 356677889999999754 568899998754 3346
Q ss_pred cChHHHhccceEEecCCCHHHHHHHHHHHHHHHh
Q 002012 416 KDPALERRFQQVFCDQPSVENTISILRGLRERYE 449 (982)
Q Consensus 416 ~d~al~rRf~~i~i~~Ps~~e~~~IL~~~~~~~~ 449 (982)
+++.|.|.|..+.++.|+.+.+..|...+...+-
T Consensus 164 is~R~~r~f~i~~~~~p~~~sl~~If~~il~~~l 197 (272)
T PF12775_consen 164 ISPRFLRHFNILNIPYPSDESLNTIFSSILQSHL 197 (272)
T ss_dssp HHHHHHTTEEEEE----TCCHHHHHHHHHHHHHT
T ss_pred CChHHhhheEEEEecCCChHHHHHHHHHHHhhhc
Confidence 8999999999999999999999999988887754
No 408
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.84 E-value=6.2e-09 Score=110.51 Aligned_cols=155 Identities=21% Similarity=0.261 Sum_probs=105.3
Q ss_pred cccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCC---ceEEEeccccccccccc
Q 002012 663 KRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTEN---ALVRIDMSEYMEKHSVS 739 (982)
Q Consensus 663 ~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~---~~v~i~~s~~~~~~~~~ 739 (982)
.++++|++.+..+.+... .++-| |+||+||||+|||....+.|..+++... .+..++.|+-..
T Consensus 41 ~dv~~~~ei~st~~~~~~-------~~~lP--h~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~rg----- 106 (360)
T KOG0990|consen 41 GIVIKQEPIWSTENRYSG-------MPGLP--HLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDDRG----- 106 (360)
T ss_pred hhHhcCCchhhHHHHhcc-------CCCCC--cccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCccC-----
Confidence 568888888887766522 12333 7999999999999999999999976311 112222222110
Q ss_pred cccCCCCCccccccCCchhHHHh-------hCCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEEe
Q 002012 740 RLVGAPPGYVGYEEGGQLTEVVR-------RRPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMT 812 (982)
Q Consensus 740 ~l~g~~~g~vg~~~~~~l~~~l~-------~~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~t 812 (982)
++. +. +.-+++...+ .+....+++||+|.|..++||+|.+.++... .|+.|+..
T Consensus 107 --id~----vr--~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~AQnALRRviek~t-----------~n~rF~ii 167 (360)
T KOG0990|consen 107 --IDP----VR--QQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRDAQNALRRVIEKYT-----------ANTRFATI 167 (360)
T ss_pred --Ccc----hH--HHHHHHHhhccceeccccCceeEEEecchhHhhHHHHHHHHHHHHHhc-----------cceEEEEe
Confidence 000 00 0001111111 2366799999999999999999999887522 46888888
Q ss_pred cCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHHH
Q 002012 813 SNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNR 882 (982)
Q Consensus 813 sn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~ 882 (982)
+|.... ..|.+.+|| .-++|.|++..+....+...++.
T Consensus 168 ~n~~~k-------------------------------i~pa~qsRc-trfrf~pl~~~~~~~r~shi~e~ 205 (360)
T KOG0990|consen 168 SNPPQK-------------------------------IHPAQQSRC-TRFRFAPLTMAQQTERQSHIRES 205 (360)
T ss_pred ccChhh-------------------------------cCchhhccc-ccCCCCCCChhhhhhHHHHHHhc
Confidence 886543 678999999 58999999998888877777653
No 409
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.83 E-value=1e-08 Score=108.61 Aligned_cols=128 Identities=13% Similarity=0.094 Sum_probs=88.0
Q ss_pred eEEeecCCCCchHHHHHHHHHHhcCCCCceEEEecccc-----cccccccccc--CCCCCccccccCCchhHHHhh----
Q 002012 695 SFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEY-----MEKHSVSRLV--GAPPGYVGYEEGGQLTEVVRR---- 763 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~-----~~~~~~~~l~--g~~~g~vg~~~~~~l~~~l~~---- 763 (982)
.+||+||+|+||..+|..+|+.+++.+..- .|+.. .....+.++. ......++.++.+.+.+.+..
T Consensus 9 A~Lf~G~~G~G~~~lA~~~A~~llC~~~~~---~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~e 85 (261)
T PRK05818 9 PLLLIERKGSFLKPFLYEYLTSIVCTKANG---FCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSVE 85 (261)
T ss_pred ceeeeCCCCCcHHHHHHHHHHHHcCCCCCC---CCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCchh
Confidence 499999999999999999999997654220 12221 1111222221 111112444444455554442
Q ss_pred -CCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHH
Q 002012 764 -RPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQV 842 (982)
Q Consensus 764 -~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 842 (982)
+++.|++||++|+|+....|+||+.||+ +..+++||++|+....
T Consensus 86 ~~~~KV~II~~ae~m~~~AaNaLLK~LEE-----------Pp~~t~fiLit~~~~~------------------------ 130 (261)
T PRK05818 86 SNGKKIYIIYGIEKLNKQSANSLLKLIEE-----------PPKNTYGIFTTRNENN------------------------ 130 (261)
T ss_pred cCCCEEEEeccHhhhCHHHHHHHHHhhcC-----------CCCCeEEEEEECChHh------------------------
Confidence 3468999999999999999999999998 2367999999886543
Q ss_pred HHHHHhhcChHHHhccccccccCCCC
Q 002012 843 VELARQTFRPEFLNRIDEYIVFQPLD 868 (982)
Q Consensus 843 ~~~~~~~f~p~ll~Rid~ii~F~pl~ 868 (982)
+.|++++|| ..+.|+++.
T Consensus 131 -------lLpTI~SRC-q~~~~~~~~ 148 (261)
T PRK05818 131 -------ILNTILSRC-VQYVVLSKE 148 (261)
T ss_pred -------CchHhhhhe-eeeecCChh
Confidence 788999999 678888873
No 410
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.82 E-value=4.1e-08 Score=119.46 Aligned_cols=163 Identities=17% Similarity=0.164 Sum_probs=98.8
Q ss_pred CCcccchHHHHHHHHHhccC---------------------CCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCe
Q 002012 269 DPVIGRDDEIRRCIQILSRR---------------------TKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRK 327 (982)
Q Consensus 269 ~~liG~~~~i~~l~~~L~~~---------------------~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~ 327 (982)
..+.|.++..+.++-.|-.+ ...|+||+|+||||||.+|+.+++...+... -.+..
T Consensus 450 P~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~y---tsG~~ 526 (915)
T PTZ00111 450 PSIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIY---TSGKS 526 (915)
T ss_pred CeEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCcccc---CCCCC
Confidence 35788888777776665332 1228999999999999999999986533321 11233
Q ss_pred EEEEecccccc-cccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCC---------
Q 002012 328 LISLDMASLVA-GTCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRG--------- 397 (982)
Q Consensus 328 v~~l~~~~l~~-~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g--------- 397 (982)
...+++..... .....|++.-.. .. +..+++ .+++|||++.+. ...+..|..+|+.+
T Consensus 527 ~s~vgLTa~~~~~d~~tG~~~le~-Ga---LvlAdg-GtL~IDEidkms--------~~~Q~aLlEaMEqqtIsI~KaGi 593 (915)
T PTZ00111 527 SSSVGLTASIKFNESDNGRAMIQP-GA---VVLANG-GVCCIDELDKCH--------NESRLSLYEVMEQQTVTIAKAGI 593 (915)
T ss_pred CccccccchhhhcccccCcccccC-Cc---EEEcCC-CeEEecchhhCC--------HHHHHHHHHHHhCCEEEEecCCc
Confidence 33333332211 000112211100 01 111233 389999999986 55667788888643
Q ss_pred ------CeEEEEecCchhHh--------hhhhcChHHHhccceE--EecCCCHHHHHHHHHHHHHH
Q 002012 398 ------ELRCIGATTLNEYR--------NYIEKDPALERRFQQV--FCDQPSVENTISILRGLRER 447 (982)
Q Consensus 398 ------~i~vI~at~~~~~~--------~~~~~d~al~rRf~~i--~i~~Ps~~e~~~IL~~~~~~ 447 (982)
++.+|+|+|+...+ .-+.+++++.+||+.| .++.|+.+.=..|..++...
T Consensus 594 ~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l~D~~d~~~D~~lA~hI~~~ 659 (915)
T PTZ00111 594 VATLKAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQDTDQLISLSIAKD 659 (915)
T ss_pred ceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcEEEEecCCCChHHHHHHHHHHHHh
Confidence 56899999986422 3567899999999844 55557766555555555543
No 411
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=1.4e-09 Score=122.03 Aligned_cols=123 Identities=25% Similarity=0.366 Sum_probs=77.0
Q ss_pred CCCCcccchHHHHHHHHHhccCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEe--------------
Q 002012 267 KLDPVIGRDDEIRRCIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLD-------------- 332 (982)
Q Consensus 267 ~l~~liG~~~~i~~l~~~L~~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~-------------- 332 (982)
.|.||+||+...+.+..... ...|+||+||||||||++|+.+...+..-..++.+.-..+.+++
T Consensus 177 D~~DV~GQ~~AKrAleiAAA--GgHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~g~~~~~~~~~~~rP 254 (490)
T COG0606 177 DFKDVKGQEQAKRALEIAAA--GGHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLAGDLHEGCPLKIHRP 254 (490)
T ss_pred chhhhcCcHHHHHHHHHHHh--cCCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhcccccccCccceeCC
Confidence 57799999887776655433 56799999999999999999988766433322222222222221
Q ss_pred ---------cccccccccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCCCe----
Q 002012 333 ---------MASLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRGEL---- 399 (982)
Q Consensus 333 ---------~~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g~i---- 399 (982)
+.++++|... ..-.++..+++ .||||||+-.+- ..+.+.|++-||+|.+
T Consensus 255 Fr~PHHsaS~~aLvGGG~~---------p~PGeIsLAH~-GVLFLDElpef~--------~~iLe~LR~PLE~g~i~IsR 316 (490)
T COG0606 255 FRAPHHSASLAALVGGGGV---------PRPGEISLAHN-GVLFLDELPEFK--------RSILEALREPLENGKIIISR 316 (490)
T ss_pred ccCCCccchHHHHhCCCCC---------CCCCceeeecC-CEEEeeccchhh--------HHHHHHHhCccccCcEEEEE
Confidence 1122221100 00011222233 499999999875 6788999999998754
Q ss_pred -----------EEEEecCchh
Q 002012 400 -----------RCIGATTLNE 409 (982)
Q Consensus 400 -----------~vI~at~~~~ 409 (982)
.+|++||+..
T Consensus 317 a~~~v~ypa~Fqlv~AmNpcp 337 (490)
T COG0606 317 AGSKVTYPARFQLVAAMNPCP 337 (490)
T ss_pred cCCeeEEeeeeEEhhhcCCCC
Confidence 6677777654
No 412
>PF02861 Clp_N: Clp amino terminal domain; InterPro: IPR004176 This short domain is found in one or two copies at the amino terminus of ClpA and ClpB proteins from bacteria and eukaryotes. The function of these domains is uncertain but they may form a protein binding site []. The proteins are thought to be subunits of ATP-dependent proteases which act as chaperones to target the proteases to substrates.; GO: 0019538 protein metabolic process; PDB: 3FH2_A 3ZRJ_A 3ZRI_A 1QVR_C 3FES_C 2Y1R_F 3PXG_D 2Y1Q_A 3PXI_C 2K77_A ....
Probab=98.81 E-value=6.3e-09 Score=83.63 Aligned_cols=53 Identities=40% Similarity=0.528 Sum_probs=49.5
Q ss_pred HHHHHHHcCCCCcCHHHHHHHHhcCCCcHHHHHHHHcCCChHHHHHHHHHhhc
Q 002012 108 AVDAARVNNQQVVETEHLMKALLEQKDGLARRILTKAGQDNTKVLQATEDFIS 160 (982)
Q Consensus 108 A~~~A~~~~~~~v~~eHlLlaLl~~~~~~~~~iL~~~gv~~~~l~~~~~~~~~ 160 (982)
|+++|++++|++|++||||+||+.++++.+.++|+++|+|++.+++++++.++
T Consensus 1 A~~~A~~~~~~~i~~eHlL~all~~~~~~~~~il~~~~id~~~l~~~i~~~lg 53 (53)
T PF02861_consen 1 AQELARERGHQYISPEHLLLALLEDPDSIAARILKKLGIDPEQLKAAIEKALG 53 (53)
T ss_dssp HHHHHHHTTBSSE-HHHHHHHHHHHTTSHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred CHHHHHHcCCCcccHHHHHHHHHhhhhHHHHHHHHHcCCCHHHHHHHHHHHhC
Confidence 78999999999999999999999999999999999999999999999988764
No 413
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.79 E-value=1.4e-07 Score=113.72 Aligned_cols=187 Identities=20% Similarity=0.150 Sum_probs=117.5
Q ss_pred CCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccccccccccH--HHHHH-HH--HH--HHHhcC
Q 002012 289 TKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGTCYRGDF--EKRLK-AV--LK--EVTKSN 361 (982)
Q Consensus 289 ~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~~~~g~~--e~~l~-~l--~~--~~~~~~ 361 (982)
.-.++||.|+||||||++|+++++.+.. ..+++.+..+... ....|.. +..+. .. +. .+...+
T Consensus 15 ~~g~vLl~G~~GtgKs~lar~l~~~~~~--------~~pfv~i~~~~t~--d~L~G~idl~~~~~~g~~~~~~G~L~~A~ 84 (589)
T TIGR02031 15 SLGGVAIRARAGTGKTALARALAEILPP--------IMPFVELPLGVTE--DRLIGGIDVEESLAGGQRVTQPGLLDEAP 84 (589)
T ss_pred CcceEEEEcCCCcHHHHHHHHHHHhCCc--------CCCeEecCcccch--hhcccchhhhhhhhcCcccCCCCCeeeCC
Confidence 3668999999999999999999997622 1235555432111 1112221 10000 00 00 011123
Q ss_pred CCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCCC---------------eEEEEecCchhHhhhhhcChHHHhccc-
Q 002012 362 GQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRGE---------------LRCIGATTLNEYRNYIEKDPALERRFQ- 425 (982)
Q Consensus 362 ~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g~---------------i~vI~at~~~~~~~~~~~d~al~rRf~- 425 (982)
+.+||||||+.+. ..+++.|+.+|+.+. +.+|+++|+.+... .+.++|..||.
T Consensus 85 -~GvL~lDEi~rl~--------~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g--~L~~~LldRf~l 153 (589)
T TIGR02031 85 -RGVLYVDMANLLD--------DGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGG--GLPDHLLDRLAL 153 (589)
T ss_pred -CCcEeccchhhCC--------HHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccC--CCCHHHHHhccC
Confidence 3489999999986 677888999987653 68899888875322 68999999997
Q ss_pred eEEecC-CCHHHHHHHHHHHHHHHh-------------------hhcCCccChHHHHHHHHHhhhhhccCCCcchhhHHH
Q 002012 426 QVFCDQ-PSVENTISILRGLRERYE-------------------LHHGVKISDSALVSAAVLADRYITERFLPDKAIDLV 485 (982)
Q Consensus 426 ~i~i~~-Ps~~e~~~IL~~~~~~~~-------------------~~~~v~i~~~~l~~~~~~s~r~i~~~~~p~~a~~ll 485 (982)
.|.+.. |+.+++.+|++.....+. .-..+.++++.+.+++.++-.+- ..-++..+.++
T Consensus 154 ~v~~~~~~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~g--v~s~Ra~i~~~ 231 (589)
T TIGR02031 154 HVSLEDVASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLG--ISGHRADLFAV 231 (589)
T ss_pred eeecCCCCCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcC--CCCccHHHHHH
Confidence 556655 467778888876543221 02346788888888877764321 12256677777
Q ss_pred HHHHHHhhhhccC
Q 002012 486 DEAAAKLKMEITS 498 (982)
Q Consensus 486 d~a~~~~~~~~~~ 498 (982)
.-|.+.+.+....
T Consensus 232 r~ArA~Aal~gr~ 244 (589)
T TIGR02031 232 RAAKAHAALHGRT 244 (589)
T ss_pred HHHHHHHHHhCCC
Confidence 7777777766553
No 414
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.77 E-value=4.6e-08 Score=116.42 Aligned_cols=251 Identities=17% Similarity=0.206 Sum_probs=149.7
Q ss_pred HHHHHhhhcccccchHHHHHHHHHHHHHhcCCCC--C----CCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEe
Q 002012 655 VMLEEVLHKRVIGQDIAVKSVADAIRRSRAGLSD--P----ARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRID 728 (982)
Q Consensus 655 ~~l~~~l~~~iiGq~~a~~~l~~~i~~~~~g~~~--~----~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~ 728 (982)
..+.+.+...|.|.+.+++.|.-++- .|... + -+.-.|+||+|.||||||.+-+.+++.+.. .-+++..
T Consensus 278 ~~l~~SiaPsIyG~e~VKkAilLqLf---gGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr--~vytsgk 352 (682)
T COG1241 278 DILIKSIAPSIYGHEDVKKAILLQLF---GGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPR--GVYTSGK 352 (682)
T ss_pred HHHHHHhcccccCcHHHHHHHHHHhc---CCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCc--eEEEccc
Confidence 44556677899999998888765552 12111 1 122357999999999999999999988721 1111111
Q ss_pred ccccccccccccccCCCCCcccc--ccCCchhHHHhhCCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCc-EEec-
Q 002012 729 MSEYMEKHSVSRLVGAPPGYVGY--EEGGQLTEVVRRRPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGR-TVSF- 804 (982)
Q Consensus 729 ~s~~~~~~~~~~l~g~~~g~vg~--~~~~~l~~~l~~~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~-~~~~- 804 (982)
++.-.. ......-.+ ..|. -+ .+++-.+.+||..|||+|||+....++|..+||.++++...+. ...+
T Consensus 353 gss~~G--LTAav~rd~--~tge~~Le----aGALVlAD~Gv~cIDEfdKm~~~dr~aihEaMEQQtIsIaKAGI~atLn 424 (682)
T COG1241 353 GSSAAG--LTAAVVRDK--VTGEWVLE----AGALVLADGGVCCIDEFDKMNEEDRVAIHEAMEQQTISIAKAGITATLN 424 (682)
T ss_pred cccccC--ceeEEEEcc--CCCeEEEe----CCEEEEecCCEEEEEeccCCChHHHHHHHHHHHhcEeeecccceeeecc
Confidence 111100 000000000 0110 01 2355667788999999999999999999999999998877633 3233
Q ss_pred ccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccC-CCChhHHHHHHHHHHHHH
Q 002012 805 TNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQ-PLDSKEISKIVEIQMNRV 883 (982)
Q Consensus 805 ~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~-pl~~~~l~~il~~~l~~~ 883 (982)
.+|-+++++|+....... . ....+. -.|+++|++|||.++... .++.+.-+.+.++.+...
T Consensus 425 ARcsvLAAaNP~~Gryd~-------~-----~~~~en------I~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil~~h 486 (682)
T COG1241 425 ARCSVLAAANPKFGRYDP-------K-----KTVAEN------INLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILDKH 486 (682)
T ss_pred hhhhhhhhhCCCCCcCCC-------C-----CCHHHh------cCCChhHHhhCCeeEEecCCCCccchHHHHHHHHHHH
Confidence 778888999875421110 0 001111 128999999999764443 344444445554444332
Q ss_pred H------------------------HH---HHhCCCCccCCHHHHHHHHhcCCC------------C--CCCchHHHHHH
Q 002012 884 K------------------------DR---LKQKKIDLHYTKEAVTLLGILGFD------------P--NFGARPVKRVI 922 (982)
Q Consensus 884 ~------------------------~~---~~~~~~~l~i~~~a~~~L~~~~~~------------~--~~gaR~L~~~i 922 (982)
. .+ +.++.+...++++|.+.|..+ |. + -.-+|.|+.+|
T Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~lrkYI~YAR~~v~P~lt~ea~e~l~~~-Yv~~Rk~~~~~~~~~~~piT~RqLEsii 565 (682)
T COG1241 487 RGEEPEETISLDGVDEVEERDFELLRKYISYARKNVTPVLTEEAREELEDY-YVEMRKKSALVEEKRTIPITARQLESII 565 (682)
T ss_pred hccccccccccccccccccCcHHHHHHHHHHHhccCCcccCHHHHHHHHHH-HHHhhhccccccccCcccccHHHHHHHH
Confidence 1 11 223346679999999998764 11 0 13478888888
Q ss_pred HHHHHHHHHHHHHcCCC
Q 002012 923 QQLVENEIAVAILKGDI 939 (982)
Q Consensus 923 ~~~l~~~la~~~l~~~~ 939 (982)
+ +..+.|++-|++..
T Consensus 566 R--LaeA~Ak~rLS~~V 580 (682)
T COG1241 566 R--LAEAHAKMRLSDVV 580 (682)
T ss_pred H--HHHHHHhhhccCCC
Confidence 7 44555665565544
No 415
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.76 E-value=6.9e-08 Score=115.92 Aligned_cols=121 Identities=21% Similarity=0.242 Sum_probs=82.6
Q ss_pred eEEEEccchhhhhCCCCCchhhHHHHHHhhhcCC-----------------------CeEEEEecCchhHhhhhhcChHH
Q 002012 364 IILFIDELHTIIGAGNQSGAMDASNMLKPMLGRG-----------------------ELRCIGATTLNEYRNYIEKDPAL 420 (982)
Q Consensus 364 ~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g-----------------------~i~vI~at~~~~~~~~~~~d~al 420 (982)
.+|||||++.|. ..++..|+.+|+.+ ++++|++++++.. ..++|.|
T Consensus 228 GtL~LDei~~L~--------~~~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~~ll---~~~dpdL 296 (637)
T PRK13765 228 GVLFIDEINTLD--------LESQQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNLDAL---ENMHPAL 296 (637)
T ss_pred cEEEEeChHhCC--------HHHHHHHHHHHHhCCEEecccccccccccCCCcceeeeeEEEEecCcCHH---HhhhHHH
Confidence 489999999985 55677788877533 4589999998652 3569999
Q ss_pred Hhccc----eEEecC--C-CHHHHHHHHHHHHHHHhhh-cCCccChHHHHHHHHHhhhhhccCC---C-cchhhHHHHHH
Q 002012 421 ERRFQ----QVFCDQ--P-SVENTISILRGLRERYELH-HGVKISDSALVSAAVLADRYITERF---L-PDKAIDLVDEA 488 (982)
Q Consensus 421 ~rRf~----~i~i~~--P-s~~e~~~IL~~~~~~~~~~-~~v~i~~~~l~~~~~~s~r~i~~~~---~-p~~a~~lld~a 488 (982)
..||. .+.+.. + +.+....+++.+.+.+..+ .-..++++++..+++++.|....+. + ..+..+|+.+|
T Consensus 297 ~~rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R~ag~r~~lsl~~~~l~~l~r~a 376 (637)
T PRK13765 297 RSRIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKRRAGRKGHLTLKLRDLGGLVRVA 376 (637)
T ss_pred HHHhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHhCCccccccCHHHHHHHHHHH
Confidence 99995 244433 1 2445555555555444333 2347999999999999888776654 2 46677788887
Q ss_pred HHHhhhh
Q 002012 489 AAKLKME 495 (982)
Q Consensus 489 ~~~~~~~ 495 (982)
...++..
T Consensus 377 ~~~a~~~ 383 (637)
T PRK13765 377 GDIARSE 383 (637)
T ss_pred HHHHHhh
Confidence 7665543
No 416
>PRK12377 putative replication protein; Provisional
Probab=98.76 E-value=2.6e-08 Score=106.51 Aligned_cols=107 Identities=20% Similarity=0.389 Sum_probs=71.9
Q ss_pred eEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccccccccCCCCCccccccCCchhHHHhhCCCeEEEEccc
Q 002012 695 SFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEI 774 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~~~~~Vl~lDEi 774 (982)
+++|+||||||||++|.+|++.+...+..++.+...++..... ..+.. + .....+.+.+... .+|+|||+
T Consensus 103 ~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~--~~~~~-----~-~~~~~~l~~l~~~--dLLiIDDl 172 (248)
T PRK12377 103 NFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLH--ESYDN-----G-QSGEKFLQELCKV--DLLVLDEI 172 (248)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHH--HHHhc-----c-chHHHHHHHhcCC--CEEEEcCC
Confidence 5999999999999999999999976667777777776643211 10110 0 0011234444444 49999999
Q ss_pred --cccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCChHHHH
Q 002012 775 --EKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYIL 821 (982)
Q Consensus 775 --dkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~i~ 821 (982)
+......++.|+++++... . .+.-+|+|||...+.+.
T Consensus 173 g~~~~s~~~~~~l~~ii~~R~-~---------~~~ptiitSNl~~~~l~ 211 (248)
T PRK12377 173 GIQRETKNEQVVLNQIIDRRT-A---------SMRSVGMLTNLNHEAMS 211 (248)
T ss_pred CCCCCCHHHHHHHHHHHHHHH-h---------cCCCEEEEcCCCHHHHH
Confidence 5667788899999998521 1 11336889998876443
No 417
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.75 E-value=1.1e-07 Score=113.00 Aligned_cols=178 Identities=22% Similarity=0.311 Sum_probs=122.9
Q ss_pred CCCCcccchHHHHHHHHHhcc--CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccccccccc
Q 002012 267 KLDPVIGRDDEIRRCIQILSR--RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGTCYRG 344 (982)
Q Consensus 267 ~l~~liG~~~~i~~l~~~L~~--~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~~~~g 344 (982)
.+.+++|....++++.+.+.+ ....+++++|++|||||++|++++..... .+.+++.+||+.+...
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~-------~~~~~i~i~c~~~~~~----- 203 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPR-------AKAPFIALNMAAIPKD----- 203 (469)
T ss_pred ccccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhcCCC-------CCCCeEeeeCCCCCHH-----
Confidence 456789999888777765543 35567899999999999999999986532 2678999999876421
Q ss_pred cHHHHHHHHHH---------------HHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCC------------
Q 002012 345 DFEKRLKAVLK---------------EVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRG------------ 397 (982)
Q Consensus 345 ~~e~~l~~l~~---------------~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g------------ 397 (982)
.++ ..+|. .+...+ +..|||||++.|. .+.+..|..+++.+
T Consensus 204 ~~~---~~lfg~~~g~~~~~~~~~~g~~~~a~-~Gtl~l~~i~~l~--------~~~q~~L~~~l~~~~~~~~~~~~~~~ 271 (469)
T PRK10923 204 LIE---SELFGHEKGAFTGANTIRQGRFEQAD-GGTLFLDEIGDMP--------LDVQTRLLRVLADGQFYRVGGYAPVK 271 (469)
T ss_pred HHH---HHhcCCCCCCCCCCCcCCCCCeeECC-CCEEEEeccccCC--------HHHHHHHHHHHhcCcEEeCCCCCeEE
Confidence 000 11111 011223 3379999999986 66777888888754
Q ss_pred -CeEEEEecCchhHh--hhhhcChHHHhccceEEecCCC----HHHHHHHHHHHHHHHhhhcC---CccChHHHHHHHHH
Q 002012 398 -ELRCIGATTLNEYR--NYIEKDPALERRFQQVFCDQPS----VENTISILRGLRERYELHHG---VKISDSALVSAAVL 467 (982)
Q Consensus 398 -~i~vI~at~~~~~~--~~~~~d~al~rRf~~i~i~~Ps----~~e~~~IL~~~~~~~~~~~~---v~i~~~~l~~~~~~ 467 (982)
++++|++|+.+.-. +.-...+.|..||..+.+..|+ .+|+..+++.+..++...++ ..++++++..+..+
T Consensus 272 ~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~ 351 (469)
T PRK10923 272 VDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRL 351 (469)
T ss_pred eeEEEEEeCCCCHHHHHHcCCchHHHHHHhcceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhC
Confidence 35889988875421 1123567888899767777765 56777788888887766554 35899999888877
Q ss_pred h
Q 002012 468 A 468 (982)
Q Consensus 468 s 468 (982)
.
T Consensus 352 ~ 352 (469)
T PRK10923 352 A 352 (469)
T ss_pred C
Confidence 4
No 418
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.74 E-value=3.4e-07 Score=100.27 Aligned_cols=190 Identities=16% Similarity=0.190 Sum_probs=108.4
Q ss_pred eEEeecCCCCchHHHHHHHHHHhcCCCCceEEEe--cccccccc---ccccccCCCCCccccccC---CchhH----HHh
Q 002012 695 SFMFMGPTGVGKTELGKALADFLFNTENALVRID--MSEYMEKH---SVSRLVGAPPGYVGYEEG---GQLTE----VVR 762 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~--~s~~~~~~---~~~~l~g~~~g~vg~~~~---~~l~~----~l~ 762 (982)
.++++||+|+|||++++.++..+... .+..+. ........ .+...+|.+.. +.... ..+.. ...
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~~~--~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~--~~~~~~~~~~l~~~l~~~~~ 120 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLDQE--RVVAAKLVNTRVDAEDLLRMVAADFGLETE--GRDKAALLRELEDFLIEQFA 120 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCC--CeEEeeeeCCCCCHHHHHHHHHHHcCCCCC--CCCHHHHHHHHHHHHHHHHh
Confidence 48999999999999999999887321 222111 11111100 11122343321 11100 11222 222
Q ss_pred hCCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHH
Q 002012 763 RRPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQV 842 (982)
Q Consensus 763 ~~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 842 (982)
.....||+|||++.+++...+.|..+.+-. .+. ...+.||+++.........
T Consensus 121 ~~~~~vliiDe~~~l~~~~~~~l~~l~~~~--~~~------~~~~~vvl~g~~~~~~~l~-------------------- 172 (269)
T TIGR03015 121 AGKRALLVVDEAQNLTPELLEELRMLSNFQ--TDN------AKLLQIFLVGQPEFRETLQ-------------------- 172 (269)
T ss_pred CCCCeEEEEECcccCCHHHHHHHHHHhCcc--cCC------CCeEEEEEcCCHHHHHHHc--------------------
Confidence 445679999999999998888776554421 011 1234556776543211110
Q ss_pred HHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHHHHHHHHHhCCCCccCCHHHHHHHHhcCCCCCCCchHHHHHH
Q 002012 843 VELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVI 922 (982)
Q Consensus 843 ~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~~~~~~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i 922 (982)
..-...+.+|+...+.++|++.+++.+++...+... .......+++++++.|.+.+- ++ .|.+...+
T Consensus 173 -----~~~~~~l~~r~~~~~~l~~l~~~e~~~~l~~~l~~~-----g~~~~~~~~~~~~~~i~~~s~-G~--p~~i~~l~ 239 (269)
T TIGR03015 173 -----SPQLQQLRQRIIASCHLGPLDREETREYIEHRLERA-----GNRDAPVFSEGAFDAIHRFSR-GI--PRLINILC 239 (269)
T ss_pred -----CchhHHHHhheeeeeeCCCCCHHHHHHHHHHHHHHc-----CCCCCCCcCHHHHHHHHHHcC-Cc--ccHHHHHH
Confidence 001125678887789999999999999998888742 112235689999999998631 11 25566666
Q ss_pred HHHHHHH
Q 002012 923 QQLVENE 929 (982)
Q Consensus 923 ~~~l~~~ 929 (982)
..++..+
T Consensus 240 ~~~~~~a 246 (269)
T TIGR03015 240 DRLLLSA 246 (269)
T ss_pred HHHHHHH
Confidence 6544443
No 419
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.74 E-value=1.1e-07 Score=109.65 Aligned_cols=225 Identities=16% Similarity=0.187 Sum_probs=134.4
Q ss_pred HHHHHHHhhhcccccchHHHHHHHHHHHHHhcC-CC--CCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEec
Q 002012 653 KLVMLEEVLHKRVIGQDIAVKSVADAIRRSRAG-LS--DPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDM 729 (982)
Q Consensus 653 ~l~~l~~~l~~~iiGq~~a~~~l~~~i~~~~~g-~~--~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~ 729 (982)
....|.+.+...|.|.+++++.+.-++--.... .. ..-+...|+||+|.||||||.+.+.+++.+... .+..-..
T Consensus 419 iy~lLa~SiAPsIye~edvKkglLLqLfGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg--~yTSGkG 496 (804)
T KOG0478|consen 419 IYELLARSIAPSIYELEDVKKGLLLQLFGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRG--VYTSGKG 496 (804)
T ss_pred HHHHHHHhhchhhhcccchhhhHHHHHhcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcc--eeecCCc
Confidence 355667778889999999998887666211000 00 012233479999999999999999999987210 0000000
Q ss_pred cccccccccccccCCCCCccccc-cCCch---hHHHhhCCCeEEEEccccccCHHHHHHHHHhhhcCceecCC-CcEEec
Q 002012 730 SEYMEKHSVSRLVGAPPGYVGYE-EGGQL---TEVVRRRPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQ-GRTVSF 804 (982)
Q Consensus 730 s~~~~~~~~~~l~g~~~g~vg~~-~~~~l---~~~l~~~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~-g~~~~~ 804 (982)
+ .-.|... |+..+ +.+++ .+++-.+.++|=.|||+|||.....+.|+++||..+++... |--..+
T Consensus 497 s---------SavGLTa-yVtrd~dtkqlVLesGALVLSD~GiCCIDEFDKM~dStrSvLhEvMEQQTvSIAKAGII~sL 566 (804)
T KOG0478|consen 497 S---------SAVGLTA-YVTKDPDTRQLVLESGALVLSDNGICCIDEFDKMSDSTRSVLHEVMEQQTLSIAKAGIIASL 566 (804)
T ss_pred c---------chhccee-eEEecCccceeeeecCcEEEcCCceEEchhhhhhhHHHHHHHHHHHHHhhhhHhhcceeeec
Confidence 0 0111111 22111 11221 34555667789999999999999999999999998877665 433334
Q ss_pred -ccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccc-cccCCCChhHHHHHHHHHH--
Q 002012 805 -TNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEY-IVFQPLDSKEISKIVEIQM-- 880 (982)
Q Consensus 805 -~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~i-i~F~pl~~~~l~~il~~~l-- 880 (982)
.++-||+++|+-...... .. .+.+. -.++|.|++|||.+ +.+.+.++..=+.+..+..
T Consensus 567 NAR~SVLAaANP~~skynp--------~k----~i~eN------I~LpptLLSRFDLIylllD~~DE~~Dr~La~HivsL 628 (804)
T KOG0478|consen 567 NARCSVLAAANPIRSKYNP--------NK----SIIEN------INLPPTLLSRFDLIFLLLDKPDERSDRRLADHIVAL 628 (804)
T ss_pred cccceeeeeeccccccCCC--------CC----chhhc------cCCChhhhhhhcEEEEEecCcchhHHHHHHHHHHHh
Confidence 667788888843211110 00 01111 12899999999964 4455665542222222222
Q ss_pred -----------------HHHHHHHHhCCCCccCCHHHHHHHHhc
Q 002012 881 -----------------NRVKDRLKQKKIDLHYTKEAVTLLGIL 907 (982)
Q Consensus 881 -----------------~~~~~~~~~~~~~l~i~~~a~~~L~~~ 907 (982)
-+..-.+..+.+...+++++.+.|...
T Consensus 629 y~e~~~~~~~~~~d~~~lr~yi~yArk~i~p~l~~ea~~~l~~a 672 (804)
T KOG0478|consen 629 YPETGEKQGSEAIDMNLLRDYIRYARKNIHPALSPEASQALIQA 672 (804)
T ss_pred cccccccchhHHHhHHHHHHHHHHHhccCCccccHHHHHHHHHH
Confidence 222233455667788999999888764
No 420
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.72 E-value=2.4e-07 Score=104.49 Aligned_cols=172 Identities=16% Similarity=0.283 Sum_probs=111.1
Q ss_pred eEEeecCCCCchHHHHHHHHHHhcCCCC--ceEEEeccccccccccccccCCCCCccccccCCchhHHHhhCCCeEEEEc
Q 002012 695 SFMFMGPTGVGKTELGKALADFLFNTEN--ALVRIDMSEYMEKHSVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFD 772 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~~~~~--~~v~i~~s~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~~~~~Vl~lD 772 (982)
.++|+||+|.|||+|+++++......+. .++.+....|.... +..+.. .....+.+.. ...+++||
T Consensus 115 plfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~-v~a~~~--------~~~~~Fk~~y---~~dlllID 182 (408)
T COG0593 115 PLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDF-VKALRD--------NEMEKFKEKY---SLDLLLID 182 (408)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHH-HHHHHh--------hhHHHHHHhh---ccCeeeec
Confidence 4999999999999999999998844333 45555555443221 000000 0001122222 34599999
Q ss_pred cccccCH--HHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhc
Q 002012 773 EIEKAHQ--DVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTF 850 (982)
Q Consensus 773 Eidkl~~--~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 850 (982)
+|+.+.. ..+..|..++.. +.+ .+--||+|+...+..+.. +
T Consensus 183 Diq~l~gk~~~qeefFh~FN~--l~~--------~~kqIvltsdr~P~~l~~---------------------------~ 225 (408)
T COG0593 183 DIQFLAGKERTQEEFFHTFNA--LLE--------NGKQIVLTSDRPPKELNG---------------------------L 225 (408)
T ss_pred hHhHhcCChhHHHHHHHHHHH--HHh--------cCCEEEEEcCCCchhhcc---------------------------c
Confidence 9998754 345555544432 100 112688888876654322 5
Q ss_pred ChHHHhcccc--ccccCCCChhHHHHHHHHHHHHHHHHHHhCCCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHHHHH
Q 002012 851 RPEFLNRIDE--YIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVE 927 (982)
Q Consensus 851 ~p~ll~Rid~--ii~F~pl~~~~l~~il~~~l~~~~~~~~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~l~ 927 (982)
.|.|.+||.- ++...|++.+....|+...... .+ +.+++++.++|+.+ ++.+ .|.|..++.++..
T Consensus 226 ~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~-------~~--~~i~~ev~~~la~~-~~~n--vReLegaL~~l~~ 292 (408)
T COG0593 226 EDRLRSRLEWGLVVEIEPPDDETRLAILRKKAED-------RG--IEIPDEVLEFLAKR-LDRN--VRELEGALNRLDA 292 (408)
T ss_pred cHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHh-------cC--CCCCHHHHHHHHHH-hhcc--HHHHHHHHHHHHH
Confidence 6788889854 7889999999999999884443 34 89999999999987 4443 4888888877543
No 421
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.72 E-value=2.3e-07 Score=103.58 Aligned_cols=151 Identities=19% Similarity=0.229 Sum_probs=99.1
Q ss_pred HHHHHHHhccCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCC---------------CCCCCeEEEEecccc--cccc
Q 002012 278 IRRCIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPE---------------TLQNRKLISLDMASL--VAGT 340 (982)
Q Consensus 278 i~~l~~~L~~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~---------------~l~~~~v~~l~~~~l--~~~~ 340 (982)
-+++... ..+-...+||+||+|+|||++|+.+|+.+.+..... ......++.++...- ..|.
T Consensus 10 w~~l~~~-~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~ 88 (325)
T PRK08699 10 WRQIAEH-WERRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGR 88 (325)
T ss_pred HHHHHHh-cCCcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccc
Confidence 3444433 223344578999999999999999999987642100 011234555543210 0010
Q ss_pred cccccHHHHHHHHHHHHHhc---CCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCC--CeEEEEecCchhHhhhhh
Q 002012 341 CYRGDFEKRLKAVLKEVTKS---NGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRG--ELRCIGATTLNEYRNYIE 415 (982)
Q Consensus 341 ~~~g~~e~~l~~l~~~~~~~---~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g--~i~vI~at~~~~~~~~~~ 415 (982)
+...-..+.++++.+.+... ++.-|++||+++.+. ....|.|+..++.. .+.+|.+|+... .
T Consensus 89 ~~~~I~id~iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld--------~~a~naLLk~LEep~~~~~~Ilvth~~~-----~ 155 (325)
T PRK08699 89 KLLQIKIDAVREIIDNVYLTSVRGGLRVILIHPAESMN--------LQAANSLLKVLEEPPPQVVFLLVSHAAD-----K 155 (325)
T ss_pred cCCCcCHHHHHHHHHHHhhCcccCCceEEEEechhhCC--------HHHHHHHHHHHHhCcCCCEEEEEeCChH-----h
Confidence 00011244566666666532 344588999999986 66778888888743 577888887776 6
Q ss_pred cChHHHhccceEEecCCCHHHHHHHHH
Q 002012 416 KDPALERRFQQVFCDQPSVENTISILR 442 (982)
Q Consensus 416 ~d~al~rRf~~i~i~~Ps~~e~~~IL~ 442 (982)
+.+.+.+||+.+.|..|+.++....|.
T Consensus 156 ll~ti~SRc~~~~~~~~~~~~~~~~L~ 182 (325)
T PRK08699 156 VLPTIKSRCRKMVLPAPSHEEALAYLR 182 (325)
T ss_pred ChHHHHHHhhhhcCCCCCHHHHHHHHH
Confidence 889999999999999999998777764
No 422
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.71 E-value=2.6e-07 Score=96.40 Aligned_cols=117 Identities=20% Similarity=0.135 Sum_probs=84.9
Q ss_pred CeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCC-CeEEEEecCchh--------HhhhhhcChHHHhccceEEecCCC
Q 002012 363 QIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRG-ELRCIGATTLNE--------YRNYIEKDPALERRFQQVFCDQPS 433 (982)
Q Consensus 363 ~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g-~i~vI~at~~~~--------~~~~~~~d~al~rRf~~i~i~~Ps 433 (982)
|.||||||+|+|- .+.+..|...++.. ...+|+++|.-. ...-..+++.|..|+-.|....++
T Consensus 297 PGVLFIDEVhMLD--------iEcFTyL~kalES~iaPivifAsNrG~~~irGt~d~~sPhGip~dllDRl~Iirt~~y~ 368 (456)
T KOG1942|consen 297 PGVLFIDEVHMLD--------IECFTYLHKALESPIAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLDRLLIIRTLPYD 368 (456)
T ss_pred CcceEeeehhhhh--------hHHHHHHHHHhcCCCCceEEEecCCcceeecCCcCCCCCCCCCHHHhhheeEEeeccCC
Confidence 5699999999985 67888899988754 456677776531 111234689999999888888899
Q ss_pred HHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCCcchhhHHHHHHHHHhhhhc
Q 002012 434 VENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLPDKAIDLVDEAAAKLKMEI 496 (982)
Q Consensus 434 ~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~p~~a~~lld~a~~~~~~~~ 496 (982)
.++..+|++.-.+- .++.++++++..++.+.. +..-+.+++|+--|.-.++...
T Consensus 369 ~~e~r~Ii~~Ra~~----E~l~~~e~a~~~l~~~gt-----~tsLRy~vqLl~p~~~~ak~~g 422 (456)
T KOG1942|consen 369 EEEIRQIIKIRAQV----EGLQVEEEALDLLAEIGT-----STSLRYAVQLLTPASILAKTNG 422 (456)
T ss_pred HHHHHHHHHHHHhh----hcceecHHHHHHHHhhcc-----chhHHHHHHhcCHHHHHHHHcC
Confidence 99999999765554 688999999999988743 2334566777665554444443
No 423
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.71 E-value=1.4e-07 Score=112.53 Aligned_cols=194 Identities=13% Similarity=0.136 Sum_probs=125.2
Q ss_pred CCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccccccccCCCCCccccccCC--chhHHHhhCCCeEE
Q 002012 692 PIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRLVGAPPGYVGYEEGG--QLTEVVRRRPYSVV 769 (982)
Q Consensus 692 p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l~g~~~g~vg~~~~~--~l~~~l~~~~~~Vl 769 (982)
.++.+++.|+.|+||+++++.++..+.. ..+|+.+-.+ -+...|+|.-.-...-..+. .-.+.+..++++||
T Consensus 24 ~~gGv~i~g~~G~~ks~~~r~l~~llp~-~~p~r~~p~~-----~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~GvL 97 (584)
T PRK13406 24 GLGGVVLRARAGPVRDRWLAALRALLPA-GTPLRRLPPG-----IADDRLLGGLDLAATLRAGRPVAQRGLLAEADGGVL 97 (584)
T ss_pred ccceEEEEcCCCcHHHHHHHHHHHhcCC-CCCcccCCCC-----CcHHHccCCchHHhHhhcCCcCCCCCceeeccCCEE
Confidence 3456999999999999999999998832 2455433221 12234666521000000001 12346778889999
Q ss_pred EEccccccCHHHHHHHHHhhhcCceecCC-CcEEec-ccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHH
Q 002012 770 LFDEIEKAHQDVFNILLQLLDDGRITDSQ-GRTVSF-TNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELAR 847 (982)
Q Consensus 770 ~lDEidkl~~~~~~~Ll~~le~g~~~d~~-g~~~~~-~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 847 (982)
|+||+..+++.+++.|++.|++|.++... |..+.+ .++++|+|-|.... .
T Consensus 98 ~lDe~n~~~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~----------------------------~ 149 (584)
T PRK13406 98 VLAMAERLEPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEE----------------------------D 149 (584)
T ss_pred EecCcccCCHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhc----------------------------c
Confidence 99999999999999999999999988743 555555 77888887432210 1
Q ss_pred hhcChHHHhccccccccCCCChhHHHHHH--HHHHHHHHHHHHhCCCCccCCHHHHHHHHhcCCCCCC-CchHHHHHHH
Q 002012 848 QTFRPEFLNRIDEYIVFQPLDSKEISKIV--EIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNF-GARPVKRVIQ 923 (982)
Q Consensus 848 ~~f~p~ll~Rid~ii~F~pl~~~~l~~il--~~~l~~~~~~~~~~~~~l~i~~~a~~~L~~~~~~~~~-gaR~L~~~i~ 923 (982)
..+++.+++||+..|...+++..+..+.. ...+....+++ -.+.++++.+++++..+..-.. |.|.-..+++
T Consensus 150 ~~L~~~lLDRf~l~v~v~~~~~~~~~~~~~~~~~I~~AR~rl----~~v~v~~~~l~~i~~~~~~~gv~S~Ra~i~llr 224 (584)
T PRK13406 150 ERAPAALADRLAFHLDLDGLALRDAREIPIDADDIAAARARL----PAVGPPPEAIAALCAAAAALGIASLRAPLLALR 224 (584)
T ss_pred cCCCHHhHhheEEEEEcCCCChHHhcccCCCHHHHHHHHHHH----ccCCCCHHHHHHHHHHHHHhCCCCcCHHHHHHH
Confidence 34889999999999999988876553211 11222223333 1478899999888765433232 4465544444
No 424
>PF13173 AAA_14: AAA domain
Probab=98.69 E-value=8.4e-08 Score=92.58 Aligned_cols=123 Identities=19% Similarity=0.277 Sum_probs=83.6
Q ss_pred CCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccccccccccHHHHHHHHHHHHHhcCCCeEEEEcc
Q 002012 291 NNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFIDE 370 (982)
Q Consensus 291 ~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDE 370 (982)
.-++|+||.||||||+++.+++.+. ...+++.+++.+..... .....+...+.+.. ..++.+|||||
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~--------~~~~~~yi~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~~i~iDE 69 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL--------PPENILYINFDDPRDRR----LADPDLLEYFLELI-KPGKKYIFIDE 69 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc--------ccccceeeccCCHHHHH----HhhhhhHHHHHHhh-ccCCcEEEEeh
Confidence 4578899999999999999998873 24677888876554211 00000222222221 13567999999
Q ss_pred chhhhhCCCCCchhhHHHHHHhhhcCC-CeEEEEecCchhHhhhhhcChHHHhccceEEecCCCHHH
Q 002012 371 LHTIIGAGNQSGAMDASNMLKPMLGRG-ELRCIGATTLNEYRNYIEKDPALERRFQQVFCDQPSVEN 436 (982)
Q Consensus 371 i~~l~~~~~~~~~~~~~~~L~~~le~g-~i~vI~at~~~~~~~~~~~d~al~rRf~~i~i~~Ps~~e 436 (982)
++.+ .+....++.+.+.+ ++.+|.|+........ .....+..|...+.+.+.+..|
T Consensus 70 iq~~---------~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~-~~~~~l~gr~~~~~l~Plsf~E 126 (128)
T PF13173_consen 70 IQYL---------PDWEDALKFLVDNGPNIKIILTGSSSSLLSK-DIAESLAGRVIEIELYPLSFRE 126 (128)
T ss_pred hhhh---------ccHHHHHHHHHHhccCceEEEEccchHHHhh-cccccCCCeEEEEEECCCCHHH
Confidence 9998 45667788888876 6788888776653221 4556777898889999888765
No 425
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.69 E-value=9.2e-08 Score=92.66 Aligned_cols=125 Identities=24% Similarity=0.285 Sum_probs=76.0
Q ss_pred CCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEeccccccc------------ccccccHHHHHHHHHHHH
Q 002012 290 KNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAG------------TCYRGDFEKRLKAVLKEV 357 (982)
Q Consensus 290 ~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~------------~~~~g~~e~~l~~l~~~~ 357 (982)
..+++|+||||+|||++++.++..+... ...++.++++..... .............++..+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP-------GGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALA 74 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC-------CCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999999988332 125777776544321 112233444555666666
Q ss_pred HhcCCCeEEEEccchhhhhCCCCCchhhHH------HHHHhhhcCCCeEEEEecCchhHhhhhhcChHHHhccc-eEEec
Q 002012 358 TKSNGQIILFIDELHTIIGAGNQSGAMDAS------NMLKPMLGRGELRCIGATTLNEYRNYIEKDPALERRFQ-QVFCD 430 (982)
Q Consensus 358 ~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~------~~L~~~le~g~i~vI~at~~~~~~~~~~~d~al~rRf~-~i~i~ 430 (982)
... .+.||||||++.+..... .... .............+|+++|.. ....+..+.+|+. .+.+.
T Consensus 75 ~~~-~~~viiiDei~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~~~~~~~~~ 145 (148)
T smart00382 75 RKL-KPDVLILDEITSLLDAEQ----EALLLLLEELRLLLLLKSEKNLTVILTTNDE----KDLGPALLRRRFDRRIVLL 145 (148)
T ss_pred Hhc-CCCEEEEECCcccCCHHH----HHHHHhhhhhHHHHHHHhcCCCEEEEEeCCC----ccCchhhhhhccceEEEec
Confidence 643 357999999999863221 0000 012333446778899999861 1134555666765 44443
No 426
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.69 E-value=1.7e-07 Score=108.89 Aligned_cols=151 Identities=22% Similarity=0.354 Sum_probs=101.0
Q ss_pred EEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccccccccCCCCCccccccCCchhHHHh-------hCCCeE
Q 002012 696 FMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRLVGAPPGYVGYEEGGQLTEVVR-------RRPYSV 768 (982)
Q Consensus 696 lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~l~-------~~~~~V 768 (982)
+||+||||-|||++|+.+|+.. |..++.||.|+-...+.+.. .+..++. ...+.+
T Consensus 329 lLL~GppGlGKTTLAHViAkqa---GYsVvEINASDeRt~~~v~~---------------kI~~avq~~s~l~adsrP~C 390 (877)
T KOG1969|consen 329 LLLCGPPGLGKTTLAHVIAKQA---GYSVVEINASDERTAPMVKE---------------KIENAVQNHSVLDADSRPVC 390 (877)
T ss_pred EEeecCCCCChhHHHHHHHHhc---CceEEEecccccccHHHHHH---------------HHHHHHhhccccccCCCcce
Confidence 8899999999999999999997 88899999998544332211 1112221 122347
Q ss_pred EEEccccccCHHHHHHHHHhhhc-Cce-ecCCCcE---------EecccEEEEEecCCChHHHHHhhhhcccchHHHHHH
Q 002012 769 VLFDEIEKAHQDVFNILLQLLDD-GRI-TDSQGRT---------VSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEV 837 (982)
Q Consensus 769 l~lDEidkl~~~~~~~Ll~~le~-g~~-~d~~g~~---------~~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~ 837 (982)
|++||||-.++.+++.|+.++.. +.. +-..+.. -.+.+ =||+.||.-
T Consensus 391 LViDEIDGa~~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~R-PIICICNdL--------------------- 448 (877)
T KOG1969|consen 391 LVIDEIDGAPRAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTR-PIICICNDL--------------------- 448 (877)
T ss_pred EEEecccCCcHHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccC-CEEEEecCc---------------------
Confidence 89999999999999999999972 211 1111100 01222 266777742
Q ss_pred HHHHHHHHHHhhcChHHH--hccccccccCCCChhHHHHHHHHHHHHHHHHHHhCCCCccCCHHHHHHHHhc
Q 002012 838 MKKQVVELARQTFRPEFL--NRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGIL 907 (982)
Q Consensus 838 ~~~~~~~~~~~~f~p~ll--~Rid~ii~F~pl~~~~l~~il~~~l~~~~~~~~~~~~~l~i~~~a~~~L~~~ 907 (982)
|-|+|. .-+-.+|.|.|++...+.+-++..+.+ .+ +.++..++..|++.
T Consensus 449 ------------YaPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~r-------E~--mr~d~~aL~~L~el 499 (877)
T KOG1969|consen 449 ------------YAPALRPLRPFAEIIAFVPPSQSRLVERLNEICHR-------EN--MRADSKALNALCEL 499 (877)
T ss_pred ------------cchhhhhcccceEEEEecCCChhHHHHHHHHHHhh-------hc--CCCCHHHHHHHHHH
Confidence 223322 224468999999998887555555543 45 78999999999997
No 427
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.68 E-value=1.2e-07 Score=103.41 Aligned_cols=156 Identities=17% Similarity=0.285 Sum_probs=98.4
Q ss_pred eEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccccccccCCCCCccccccCCchhHHHhhCCCeEEEEccc
Q 002012 695 SFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEI 774 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~~~~~Vl~lDEi 774 (982)
++||+||+|||||.+++.+-+.+.....-...++++.......+..++...-.. ..++ ...- ......|+|||++
T Consensus 35 pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tts~~~q~~ie~~l~k---~~~~-~~gP-~~~k~lv~fiDDl 109 (272)
T PF12775_consen 35 PVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTTSNQLQKIIESKLEK---RRGR-VYGP-PGGKKLVLFIDDL 109 (272)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHHHHHHHHCCCTTECE---CTTE-EEEE-ESSSEEEEEEETT
T ss_pred cEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCCHHHHHHHHhhcEEc---CCCC-CCCC-CCCcEEEEEeccc
Confidence 499999999999999988776653222224567777765544444433221100 0000 0000 1122359999999
Q ss_pred cccCHH------HHHHHHHhhhcCceecCCC-cEEecccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHH
Q 002012 775 EKAHQD------VFNILLQLLDDGRITDSQG-RTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELAR 847 (982)
Q Consensus 775 dkl~~~------~~~~Ll~~le~g~~~d~~g-~~~~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 847 (982)
....++ ..+.|.++++.|-+.|... ......++.+|++++++.. +
T Consensus 110 N~p~~d~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~G----------------------------r 161 (272)
T PF12775_consen 110 NMPQPDKYGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGG----------------------------R 161 (272)
T ss_dssp T-S---TTS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT-----------------------------
T ss_pred CCCCCCCCCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCC----------------------------C
Confidence 866543 6789999999998888653 3456688999999986432 1
Q ss_pred hhcChHHHhccccccccCCCChhHHHHHHHHHHHHHH
Q 002012 848 QTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVK 884 (982)
Q Consensus 848 ~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~~ 884 (982)
..+++.|++.| .++.+++++.+.+..|....+....
T Consensus 162 ~~is~R~~r~f-~i~~~~~p~~~sl~~If~~il~~~l 197 (272)
T PF12775_consen 162 NPISPRFLRHF-NILNIPYPSDESLNTIFSSILQSHL 197 (272)
T ss_dssp -SHHHHHHTTE-EEEE----TCCHHHHHHHHHHHHHT
T ss_pred CCCChHHhhhe-EEEEecCCChHHHHHHHHHHHhhhc
Confidence 22678899998 5899999999999999999887644
No 428
>PRK08116 hypothetical protein; Validated
Probab=98.68 E-value=6.5e-08 Score=105.31 Aligned_cols=109 Identities=14% Similarity=0.299 Sum_probs=73.2
Q ss_pred eEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccccccccCCCCCccccccCCchhHHHhhCCCeEEEEccc
Q 002012 695 SFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEI 774 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~~~~~Vl~lDEi 774 (982)
+++|+|++|||||++|.++++.+...+.+++.++.+++.... ...++... ......+.+.+... ++|+|||+
T Consensus 116 gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i--~~~~~~~~----~~~~~~~~~~l~~~--dlLviDDl 187 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRI--KSTYKSSG----KEDENEIIRSLVNA--DLLILDDL 187 (268)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH--HHHHhccc----cccHHHHHHHhcCC--CEEEEecc
Confidence 499999999999999999999987657788888877754321 11111100 00001233444444 49999999
Q ss_pred --cccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCChHHHH
Q 002012 775 --EKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYIL 821 (982)
Q Consensus 775 --dkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~i~ 821 (982)
+......+..|+.+++.. +. .+..+|+|||.....+.
T Consensus 188 g~e~~t~~~~~~l~~iin~r-~~---------~~~~~IiTsN~~~~eL~ 226 (268)
T PRK08116 188 GAERDTEWAREKVYNIIDSR-YR---------KGLPTIVTTNLSLEELK 226 (268)
T ss_pred cCCCCCHHHHHHHHHHHHHH-HH---------CCCCEEEECCCCHHHHH
Confidence 667788899999999852 11 12458999998876543
No 429
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.68 E-value=1.6e-07 Score=103.25 Aligned_cols=152 Identities=13% Similarity=0.117 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccccccccCCC-CCc
Q 002012 670 IAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRLVGAP-PGY 748 (982)
Q Consensus 670 ~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l~g~~-~g~ 748 (982)
.+++.+.++++..+. ...+||+|+.|+||+.+|+.+++.+++....- ++.... +..+. ++ .+ .+.
T Consensus 3 ~~~~~l~~~i~~~~l--------~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~--~~~~~~--p~n~~-~~-d~~g~~ 68 (299)
T PRK07132 3 NWIKFLDNSATQNKI--------SHSFLLKSNYNEDIDEKILYFLNKFNNLQITN--LNEQEL--PANII-LF-DIFDKD 68 (299)
T ss_pred hHHHHHHHHHHhCCC--------CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCC--CCCCCC--CcceE-Ee-ccCCCc
Confidence 355666666664322 22488999999999999999999986532100 000000 00000 01 00 011
Q ss_pred cccccCCchhHHHhh-----CCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCChHHHHHh
Q 002012 749 VGYEEGGQLTEVVRR-----RPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILET 823 (982)
Q Consensus 749 vg~~~~~~l~~~l~~-----~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~i~~~ 823 (982)
++.++...+.+.+.. .++.|++||++|+++...+|+|++.||+ +..+++||++|+...
T Consensus 69 i~vd~Ir~l~~~~~~~~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEE-----------Pp~~t~~il~~~~~~------ 131 (299)
T PRK07132 69 LSKSEFLSAINKLYFSSFVQSQKKILIIKNIEKTSNSLLNALLKTIEE-----------PPKDTYFLLTTKNIN------ 131 (299)
T ss_pred CCHHHHHHHHHHhccCCcccCCceEEEEecccccCHHHHHHHHHHhhC-----------CCCCeEEEEEeCChH------
Confidence 222222223333321 3567999999999999999999999997 225788998877332
Q ss_pred hhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHH
Q 002012 824 LQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEI 878 (982)
Q Consensus 824 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~ 878 (982)
.+.|++.+|| .++.|.|++.+++.+.+..
T Consensus 132 -------------------------kll~TI~SRc-~~~~f~~l~~~~l~~~l~~ 160 (299)
T PRK07132 132 -------------------------KVLPTIVSRC-QVFNVKEPDQQKILAKLLS 160 (299)
T ss_pred -------------------------hChHHHHhCe-EEEECCCCCHHHHHHHHHH
Confidence 1667899999 7999999999998876654
No 430
>PRK12377 putative replication protein; Provisional
Probab=98.67 E-value=5.1e-08 Score=104.21 Aligned_cols=115 Identities=21% Similarity=0.306 Sum_probs=71.9
Q ss_pred CCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEeccccccccc--c-cccHHHHHHHHHHHHHhcCCCeE
Q 002012 289 TKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGTC--Y-RGDFEKRLKAVLKEVTKSNGQII 365 (982)
Q Consensus 289 ~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~~--~-~g~~e~~l~~l~~~~~~~~~~~I 365 (982)
...+++|+||||||||+||.++++.+... +..++.++..++....+ + .+. ....++..+.. .-+
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~~~-------g~~v~~i~~~~l~~~l~~~~~~~~---~~~~~l~~l~~---~dL 166 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLLAK-------GRSVIVVTVPDVMSRLHESYDNGQ---SGEKFLQELCK---VDL 166 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHHHc-------CCCeEEEEHHHHHHHHHHHHhccc---hHHHHHHHhcC---CCE
Confidence 34689999999999999999999998653 66778877766654211 0 011 11234444433 239
Q ss_pred EEEccchhhhhCCCCCchhhHHHHHHhhhc---CCCeEEEEecCch--hHhhhhhcChHHHhcc
Q 002012 366 LFIDELHTIIGAGNQSGAMDASNMLKPMLG---RGELRCIGATTLN--EYRNYIEKDPALERRF 424 (982)
Q Consensus 366 L~IDEi~~l~~~~~~~~~~~~~~~L~~~le---~g~i~vI~at~~~--~~~~~~~~d~al~rRf 424 (982)
|+|||++.... +......|.++++ .....+|.|||.. ++.+ .+...+.+|+
T Consensus 167 LiIDDlg~~~~------s~~~~~~l~~ii~~R~~~~~ptiitSNl~~~~l~~--~~~~ri~dRl 222 (248)
T PRK12377 167 LVLDEIGIQRE------TKNEQVVLNQIIDRRTASMRSVGMLTNLNHEAMST--LLGERVMDRM 222 (248)
T ss_pred EEEcCCCCCCC------CHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHH--HhhHHHHHHH
Confidence 99999976421 1234456777776 2345667788864 3322 2455666665
No 431
>PRK15115 response regulator GlrR; Provisional
Probab=98.67 E-value=3.1e-07 Score=108.34 Aligned_cols=175 Identities=18% Similarity=0.222 Sum_probs=118.1
Q ss_pred CcccchHHHHHHHHHhcc--CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccccccccccHH
Q 002012 270 PVIGRDDEIRRCIQILSR--RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGTCYRGDFE 347 (982)
Q Consensus 270 ~liG~~~~i~~l~~~L~~--~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~~~~g~~e 347 (982)
.++|....++++++.... ....+++|+|++|||||++|+.+.+.... .+.+++.+||..+.... .+
T Consensus 135 ~lig~s~~~~~~~~~~~~~a~~~~~vli~Ge~GtGk~~lA~~ih~~s~r-------~~~~f~~i~c~~~~~~~-----~~ 202 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNASPR-------ASKPFIAINCGALPEQL-----LE 202 (444)
T ss_pred cccccCHHHHHHHHHHHhhccCCCeEEEEcCCcchHHHHHHHHHHhcCC-------CCCCeEEEeCCCCCHHH-----HH
Confidence 478888887777764432 34567899999999999999999986522 26789999988764210 00
Q ss_pred HHHHHHHHH---------------HHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCC-------------Ce
Q 002012 348 KRLKAVLKE---------------VTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRG-------------EL 399 (982)
Q Consensus 348 ~~l~~l~~~---------------~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g-------------~i 399 (982)
. .+|.. ... ..+..||||||+.|. .+.+..|..+++.+ ++
T Consensus 203 ~---~lfg~~~~~~~~~~~~~~g~~~~-a~~gtl~l~~i~~l~--------~~~q~~L~~~l~~~~~~~~g~~~~~~~~~ 270 (444)
T PRK15115 203 S---ELFGHARGAFTGAVSNREGLFQA-AEGGTLFLDEIGDMP--------APLQVKLLRVLQERKVRPLGSNRDIDIDV 270 (444)
T ss_pred H---HhcCCCcCCCCCCccCCCCcEEE-CCCCEEEEEccccCC--------HHHHHHHHHHHhhCCEEeCCCCceeeeeE
Confidence 0 11111 111 223489999999996 56677788888654 46
Q ss_pred EEEEecCchhHhh--hhhcChHHHhccceEEecCCCH----HHHHHHHHHHHHHHhhhcC---CccChHHHHHHHHHh
Q 002012 400 RCIGATTLNEYRN--YIEKDPALERRFQQVFCDQPSV----ENTISILRGLRERYELHHG---VKISDSALVSAAVLA 468 (982)
Q Consensus 400 ~vI~at~~~~~~~--~~~~d~al~rRf~~i~i~~Ps~----~e~~~IL~~~~~~~~~~~~---v~i~~~~l~~~~~~s 468 (982)
++|++|+.+.... .-...+.|..|+..+.+..|+. +|+..+++.+..++...++ ..++++++..+..+.
T Consensus 271 rii~~~~~~l~~~~~~~~f~~~l~~~l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~ 348 (444)
T PRK15115 271 RIISATHRDLPKAMARGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTAS 348 (444)
T ss_pred EEEEeCCCCHHHHHHcCCccHHHHHhhceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCC
Confidence 8898888753211 1134567778888777887764 4555666777777665444 358999999988874
No 432
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.66 E-value=2e-08 Score=112.76 Aligned_cols=254 Identities=16% Similarity=0.183 Sum_probs=128.9
Q ss_pred HHHHHHHhhhcccccchHHHHHHHHHHHHHhcCCCCC----CCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEe
Q 002012 653 KLVMLEEVLHKRVIGQDIAVKSVADAIRRSRAGLSDP----ARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRID 728 (982)
Q Consensus 653 ~l~~l~~~l~~~iiGq~~a~~~l~~~i~~~~~g~~~~----~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~ 728 (982)
.+..+.+.+...|+|.+.++..|.-++-.... ...+ .+...|+||+|.||+|||.+.+.+++.. ..-++.+
T Consensus 14 ~~~~l~~s~aP~i~g~~~iK~aill~L~~~~~-~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~----pr~v~~~ 88 (331)
T PF00493_consen 14 IFDRLANSIAPSIYGHEDIKKAILLQLFGGVE-KNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLA----PRSVYTS 88 (331)
T ss_dssp HHHCCHHHCSSTTTT-HHHHHHHCCCCTT--S-CCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-----SSEEEEE
T ss_pred HHHHHHHHhCCcCcCcHHHHHHHHHHHHhccc-cccccccccccccceeeccchhhhHHHHHHHHHhhC----CceEEEC
Confidence 34556677788999988877666433321100 0011 1334579999999999999998877654 2233333
Q ss_pred ccccccccccccccCCCCCccccccCCc--hhHHHhhCCCeEEEEccccccCHHHHHHHHHhhhcCceecCC-CcEEec-
Q 002012 729 MSEYMEKHSVSRLVGAPPGYVGYEEGGQ--LTEVVRRRPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQ-GRTVSF- 804 (982)
Q Consensus 729 ~s~~~~~~~~~~l~g~~~g~vg~~~~~~--l~~~l~~~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~-g~~~~~- 804 (982)
+....... |....... ...++. -.+++-.+.++|.+|||+|++..+..+.|+++||.+.++... |-...+
T Consensus 89 g~~~s~~g----Lta~~~~d--~~~~~~~leaGalvlad~GiccIDe~dk~~~~~~~~l~eaMEqq~isi~kagi~~~l~ 162 (331)
T PF00493_consen 89 GKGSSAAG----LTASVSRD--PVTGEWVLEAGALVLADGGICCIDEFDKMKEDDRDALHEAMEQQTISIAKAGIVTTLN 162 (331)
T ss_dssp CCGSTCCC----CCEEECCC--GGTSSECEEE-HHHHCTTSEEEECTTTT--CHHHHHHHHHHHCSCEEECTSSSEEEEE
T ss_pred CCCcccCC----ccceeccc--cccceeEEeCCchhcccCceeeecccccccchHHHHHHHHHHcCeeccchhhhccccc
Confidence 33221110 11100000 000111 134677788899999999999999999999999999998876 433333
Q ss_pred ccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccc-cCCCChhHHHHHHHHHHHHH
Q 002012 805 TNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIV-FQPLDSKEISKIVEIQMNRV 883 (982)
Q Consensus 805 ~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~-F~pl~~~~l~~il~~~l~~~ 883 (982)
.++-|++++|+........ ... .+. -.+++.|++|||.++. +.+.+.+.=..+.+..+...
T Consensus 163 ar~svlaa~NP~~g~~~~~----~~~--------~~n------i~l~~~LLSRFDLif~l~D~~d~~~D~~la~~il~~~ 224 (331)
T PF00493_consen 163 ARCSVLAAANPKFGRYDPN----KSL--------SEN------INLPPPLLSRFDLIFLLRDKPDEEEDERLAEHILDSH 224 (331)
T ss_dssp ---EEEEEE--TT--S-TT----S-C--------GCC------T-S-CCCHCC-SEEECC--TTT-HHHHHHHHHHHTTT
T ss_pred chhhhHHHHhhhhhhcchh----hhh--------HHh------cccchhhHhhcCEEEEeccccccccccccceEEEecc
Confidence 7899999999764322110 000 000 1278899999997655 45666554444444333322
Q ss_pred HHH-------------------------HHhCCCCccCCHHHHHHHHhcCC-----------CCCCCchHHHHHHHHHHH
Q 002012 884 KDR-------------------------LKQKKIDLHYTKEAVTLLGILGF-----------DPNFGARPVKRVIQQLVE 927 (982)
Q Consensus 884 ~~~-------------------------~~~~~~~l~i~~~a~~~L~~~~~-----------~~~~gaR~L~~~i~~~l~ 927 (982)
... +.+..+...+++++.++|..+-. ......|.|+.+|+ +.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~lr~yI~yar~~~~P~ls~ea~~~I~~~Yv~lR~~~~~~~~~~~iT~R~LeSLIR--Ls 302 (331)
T PF00493_consen 225 RNGKKSKEKKIKKNDKPISEDLLRKYIAYARQNIHPVLSEEAKELIINYYVELRKESKSNNKSIPITIRQLESLIR--LS 302 (331)
T ss_dssp ---S--------SSS-TT-HCCCHHHHHHHHHHC--EE-HHCHHHHHHHHCCCCHCHHCHSS-B-SSCCCCCHHHH--HH
T ss_pred ccccccccccccccCCccCHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHhcccccccccccccchhhHHHHHH--HH
Confidence 110 11223556788888888876400 01234566666665 34
Q ss_pred HHHHHHHHcC
Q 002012 928 NEIAVAILKG 937 (982)
Q Consensus 928 ~~la~~~l~~ 937 (982)
.+.|+..++.
T Consensus 303 eA~AKl~lr~ 312 (331)
T PF00493_consen 303 EAHAKLRLRD 312 (331)
T ss_dssp HHHHHCTTSS
T ss_pred HHHHHHhccC
Confidence 4555555543
No 433
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.66 E-value=2.2e-08 Score=97.99 Aligned_cols=130 Identities=26% Similarity=0.396 Sum_probs=82.5
Q ss_pred ccchHHHHHHHHHhcc--CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccccccccccHHHH
Q 002012 272 IGRDDEIRRCIQILSR--RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGTCYRGDFEKR 349 (982)
Q Consensus 272 iG~~~~i~~l~~~L~~--~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~~~~g~~e~~ 349 (982)
||....++++.+.+.+ ....+++|+|++||||+++|+.|+..-... ...++.+++..+.
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~-------~~~~~~~~~~~~~------------ 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGRA-------NGPFIVIDCASLP------------ 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTTC-------CS-CCCCCHHCTC------------
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCcc-------CCCeEEechhhCc------------
Confidence 5777777777776654 466789999999999999999999864221 3344444444322
Q ss_pred HHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhc---CCCeEEEEecCchhHh--hhhhcChHHHhcc
Q 002012 350 LKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLG---RGELRCIGATTLNEYR--NYIEKDPALERRF 424 (982)
Q Consensus 350 l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le---~g~i~vI~at~~~~~~--~~~~~d~al~rRf 424 (982)
.++++.+ .+..|||+|++.+. .+.+..|...++ +.++++|++++.+... ..-.+++.|..||
T Consensus 62 -~~~l~~a----~~gtL~l~~i~~L~--------~~~Q~~L~~~l~~~~~~~~RlI~ss~~~l~~l~~~~~~~~~L~~~l 128 (138)
T PF14532_consen 62 -AELLEQA----KGGTLYLKNIDRLS--------PEAQRRLLDLLKRQERSNVRLIASSSQDLEELVEEGRFSPDLYYRL 128 (138)
T ss_dssp -HHHHHHC----TTSEEEEECGCCS---------HHHHHHHHHHHHHCTTTTSEEEEEECC-CCCHHHHSTHHHHHHHHC
T ss_pred -HHHHHHc----CCCEEEECChHHCC--------HHHHHHHHHHHHhcCCCCeEEEEEeCCCHHHHhhccchhHHHHHHh
Confidence 2333332 33489999999996 556666766665 4578999888775422 2234578888888
Q ss_pred ceEEecCCC
Q 002012 425 QQVFCDQPS 433 (982)
Q Consensus 425 ~~i~i~~Ps 433 (982)
..+.+..|+
T Consensus 129 ~~~~i~lPp 137 (138)
T PF14532_consen 129 SQLEIHLPP 137 (138)
T ss_dssp STCEEEE--
T ss_pred CCCEEeCCC
Confidence 755555553
No 434
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.64 E-value=2.7e-07 Score=110.60 Aligned_cols=52 Identities=19% Similarity=0.307 Sum_probs=40.6
Q ss_pred hcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHh
Q 002012 662 HKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFL 717 (982)
Q Consensus 662 ~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l 717 (982)
..+++||++.+..|...+.....+ ..+...++|+||||||||++++.+|+.+
T Consensus 83 ldel~~~~~ki~~l~~~l~~~~~~----~~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 83 QHELAVHKKKIEEVETWLKAQVLE----NAPKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred HHHhcCcHHHHHHHHHHHHhcccc----cCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 367999999999888887654322 1222238999999999999999999887
No 435
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.62 E-value=2.9e-07 Score=109.21 Aligned_cols=183 Identities=22% Similarity=0.284 Sum_probs=119.0
Q ss_pred CCcccchHHHHHHHHHhcc--CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccccc------
Q 002012 269 DPVIGRDDEIRRCIQILSR--RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGT------ 340 (982)
Q Consensus 269 ~~liG~~~~i~~l~~~L~~--~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~------ 340 (982)
..++|....++.+...+.+ ....++++.|++||||+++|+++...... .+.+++.+||+.+....
T Consensus 134 ~~lig~s~~~~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~-------~~~~~~~~~c~~~~~~~~~~~lf 206 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHSPR-------ANGPFIALNMAAIPKDLIESELF 206 (463)
T ss_pred cceeecCHHHHHHHHHHHHHhCcCCeEEEECCCCCCHHHHHHHHHHhCCC-------CCCCeEEEeCCCCCHHHHHHHhc
Confidence 4588888777766665533 34557899999999999999999886522 26789999987764210
Q ss_pred -cccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCC-------------CeEEEEecC
Q 002012 341 -CYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRG-------------ELRCIGATT 406 (982)
Q Consensus 341 -~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g-------------~i~vI~at~ 406 (982)
...|.+..........+...+ +..||||||+.|. .+.+..|+.+++.+ ++++|++|+
T Consensus 207 g~~~~~~~~~~~~~~g~~~~a~-~gtl~l~ei~~l~--------~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~ 277 (463)
T TIGR01818 207 GHEKGAFTGANTRRQGRFEQAD-GGTLFLDEIGDMP--------LDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATH 277 (463)
T ss_pred CCCCCCCCCcccCCCCcEEECC-CCeEEEEchhhCC--------HHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCC
Confidence 000111000000001111223 3479999999986 56677788887654 458899888
Q ss_pred chhHh--hhhhcChHHHhccceEEecCCC----HHHHHHHHHHHHHHHhhhcC---CccChHHHHHHHHH
Q 002012 407 LNEYR--NYIEKDPALERRFQQVFCDQPS----VENTISILRGLRERYELHHG---VKISDSALVSAAVL 467 (982)
Q Consensus 407 ~~~~~--~~~~~d~al~rRf~~i~i~~Ps----~~e~~~IL~~~~~~~~~~~~---v~i~~~~l~~~~~~ 467 (982)
.+.-. ..-...+.|..|+..+.+..|+ .+|+..+++.+..++...++ ..++++++..+..+
T Consensus 278 ~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~ 347 (463)
T TIGR01818 278 QNLEALVRQGKFREDLFHRLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQL 347 (463)
T ss_pred CCHHHHHHcCCcHHHHHHHhCcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhC
Confidence 76311 1113456777888755555554 67788888888888776555 57899999988877
No 436
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.62 E-value=3.6e-07 Score=108.17 Aligned_cols=177 Identities=16% Similarity=0.206 Sum_probs=118.2
Q ss_pred CCCcccchHHHHHHHHHhcc--CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEeccccccccccccc
Q 002012 268 LDPVIGRDDEIRRCIQILSR--RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGTCYRGD 345 (982)
Q Consensus 268 l~~liG~~~~i~~l~~~L~~--~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~~~~g~ 345 (982)
+..++|.+..+..+.+.+.+ ....++++.|++||||+++|+.+...... .+.+++.+||..+... .
T Consensus 142 ~~~ii~~S~~~~~~~~~~~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~-------~~~~~~~i~c~~~~~~-----~ 209 (457)
T PRK11361 142 WGHILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNSRR-------AKGPFIKVNCAALPES-----L 209 (457)
T ss_pred ccceecccHHHhHHHHHHHHHcCCCcEEEEEcCCCccHHHHHHHHHHhCCC-------CCCCeEEEECCCCCHH-----H
Confidence 45688888877776665433 45568999999999999999999875422 2678999998876421 0
Q ss_pred HHHHHHHHHH---------------HHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCC-------------
Q 002012 346 FEKRLKAVLK---------------EVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRG------------- 397 (982)
Q Consensus 346 ~e~~l~~l~~---------------~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g------------- 397 (982)
.+. .+|. .+...+ +.+||||||+.+. .+.+..|..+++.+
T Consensus 210 ~~~---~lfg~~~~~~~~~~~~~~g~~~~a~-~gtl~ld~i~~l~--------~~~q~~L~~~l~~~~~~~~~~~~~~~~ 277 (457)
T PRK11361 210 LES---ELFGHEKGAFTGAQTLRQGLFERAN-EGTLLLDEIGEMP--------LVLQAKLLRILQEREFERIGGHQTIKV 277 (457)
T ss_pred HHH---HhcCCCCCCCCCCCCCCCCceEECC-CCEEEEechhhCC--------HHHHHHHHHHHhcCcEEeCCCCceeee
Confidence 000 1111 111223 3489999999996 56677788877643
Q ss_pred CeEEEEecCchhHh--hhhhcChHHHhccceEEecCCC----HHHHHHHHHHHHHHHhhhcC---CccChHHHHHHHHHh
Q 002012 398 ELRCIGATTLNEYR--NYIEKDPALERRFQQVFCDQPS----VENTISILRGLRERYELHHG---VKISDSALVSAAVLA 468 (982)
Q Consensus 398 ~i~vI~at~~~~~~--~~~~~d~al~rRf~~i~i~~Ps----~~e~~~IL~~~~~~~~~~~~---v~i~~~~l~~~~~~s 468 (982)
++++|++|+.+.-. .--...+.+..|+..+.+..|+ .+|+..+++.+..++...++ +.++++++..+..+.
T Consensus 278 ~~rii~~t~~~l~~~~~~g~~~~~l~~~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~ 357 (457)
T PRK11361 278 DIRIIAATNRDLQAMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWS 357 (457)
T ss_pred ceEEEEeCCCCHHHHHHcCCchHHHHHHhccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCC
Confidence 37899999876311 1113456777788777777775 45555666777777765443 468999998887773
No 437
>PRK08116 hypothetical protein; Validated
Probab=98.62 E-value=2.7e-07 Score=100.45 Aligned_cols=127 Identities=17% Similarity=0.212 Sum_probs=75.0
Q ss_pred CCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEeccccccccc--ccccHHHHHHHHHHHHHhcCCCeEEEE
Q 002012 291 NNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGTC--YRGDFEKRLKAVLKEVTKSNGQIILFI 368 (982)
Q Consensus 291 ~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~~--~~g~~e~~l~~l~~~~~~~~~~~IL~I 368 (982)
.+++|+|+||+|||+||.++++.+... +.+++.++..++....+ +.+........+++.+... -+|+|
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~-------~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~~~---dlLvi 184 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEK-------GVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLVNA---DLLIL 184 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc-------CCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhcCC---CEEEE
Confidence 359999999999999999999998653 56788888766553211 1111111222444444432 28999
Q ss_pred ccchhhhhCCCCCchhhHHHHHHhhhc---CCCeEEEEecCchhHhhhhhcChHHHhcc----ceEEecCCC
Q 002012 369 DELHTIIGAGNQSGAMDASNMLKPMLG---RGELRCIGATTLNEYRNYIEKDPALERRF----QQVFCDQPS 433 (982)
Q Consensus 369 DEi~~l~~~~~~~~~~~~~~~L~~~le---~g~i~vI~at~~~~~~~~~~~d~al~rRf----~~i~i~~Ps 433 (982)
||++.... +......|..+++ +....+|.|||...-.-...++..+.+|+ ..|.+.-|+
T Consensus 185 DDlg~e~~------t~~~~~~l~~iin~r~~~~~~~IiTsN~~~~eL~~~~~~ri~sRl~e~~~~v~~~g~d 250 (268)
T PRK08116 185 DDLGAERD------TEWAREKVYNIIDSRYRKGLPTIVTTNLSLEELKNQYGKRIYDRILEMCTPVENEGKS 250 (268)
T ss_pred ecccCCCC------CHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHhHHHHHHHHHcCEEEEeeCcC
Confidence 99975311 1122334444443 23345677777654211112578888884 356776666
No 438
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=98.60 E-value=4.6e-07 Score=103.89 Aligned_cols=254 Identities=14% Similarity=0.188 Sum_probs=148.2
Q ss_pred HHHHHHHHHhhhcccccchHHHHHHHHHHHH---HhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEE
Q 002012 651 REKLVMLEEVLHKRVIGQDIAVKSVADAIRR---SRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRI 727 (982)
Q Consensus 651 ~~~l~~l~~~l~~~iiGq~~a~~~l~~~i~~---~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i 727 (982)
...+..|...|+..|.|++.++.-|.-.+-- ..++...+-+.-.|++++|.||+||+-+.++....+.. . ++.
T Consensus 333 ~nly~~lv~Sl~PsIyGhe~VK~GilL~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR---~-vYt 408 (764)
T KOG0480|consen 333 ENLYKNLVNSLFPSIYGHELVKAGILLSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPR---S-VYT 408 (764)
T ss_pred chHHHHHHHhhCccccchHHHHhhHHHHHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCc---c-eEe
Confidence 3456778889999999999999888666521 11111223344568999999999999999999987622 1 111
Q ss_pred eccccccccccccccCCCCCccccccCCch---hHHHhhCCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCc-EEe
Q 002012 728 DMSEYMEKHSVSRLVGAPPGYVGYEEGGQL---TEVVRRRPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGR-TVS 803 (982)
Q Consensus 728 ~~s~~~~~~~~~~l~g~~~g~vg~~~~~~l---~~~l~~~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~-~~~ 803 (982)
++..... -|-...-+..++.+.+ .+++--+.++|=.|||+|||+..-|.+|+.+||...++..... ...
T Consensus 409 -sGkaSSa------AGLTaaVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~~dqvAihEAMEQQtISIaKAGv~aT 481 (764)
T KOG0480|consen 409 -SGKASSA------AGLTAAVVKDEESGDFTIEAGALMLADNGICCIDEFDKMDVKDQVAIHEAMEQQTISIAKAGVVAT 481 (764)
T ss_pred -cCccccc------ccceEEEEecCCCCceeeecCcEEEccCceEEechhcccChHhHHHHHHHHHhheehheecceEEe
Confidence 1111100 0100001111111211 2355567788999999999999999999999999887766533 222
Q ss_pred c-ccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhcccccc-ccCCCChhHHHHHHHHHHH
Q 002012 804 F-TNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYI-VFQPLDSKEISKIVEIQMN 881 (982)
Q Consensus 804 ~-~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii-~F~pl~~~~l~~il~~~l~ 881 (982)
+ .++-||+++|+-..+.... .-+++.+ .|++++++|||.++ .....++..=..|..+.+.
T Consensus 482 LnARtSIlAAANPv~GhYdR~------------ktl~eNi------~msApimSRFDL~FiLlD~~nE~~D~~ia~hIld 543 (764)
T KOG0480|consen 482 LNARTSILAAANPVGGHYDRK------------KTLRENI------NMSAPIMSRFDLFFILLDDCNEVVDYAIARHILD 543 (764)
T ss_pred ecchhhhhhhcCCcCCccccc------------cchhhhc------CCCchhhhhhcEEEEEecCCchHHHHHHHHHHHH
Confidence 2 5566777777643222110 1112222 28999999999643 3334443322222222221
Q ss_pred ---------------------HHHHHHHhCCCCccCCHHHHHHHHhc----------CC---CCCCCchHHHHHHHHHHH
Q 002012 882 ---------------------RVKDRLKQKKIDLHYTKEAVTLLGIL----------GF---DPNFGARPVKRVIQQLVE 927 (982)
Q Consensus 882 ---------------------~~~~~~~~~~~~l~i~~~a~~~L~~~----------~~---~~~~gaR~L~~~i~~~l~ 927 (982)
++-... +.+...++.++.+.|.++ +. ++.+.+|.|+..|+ +.
T Consensus 544 ~h~~i~~~~~~~~~~~~e~vrkYi~yA--R~~~P~ls~ea~~~lve~Y~~lR~~~~~~~~~~s~~ITvRqLESlIR--Ls 619 (764)
T KOG0480|consen 544 LHRGIDDATERVCVYTLEQVRKYIRYA--RNFKPKLSKEASEMLVEKYKGLRQRDAQGNNRSSYRITVRQLESLIR--LS 619 (764)
T ss_pred HhccccccccccccccHHHHHHHHHHH--HhcCccccHHHHHHHHHHHHHHHHhhccccCcccccccHHHHHHHHH--HH
Confidence 111111 245577888877777652 11 12356899988887 45
Q ss_pred HHHHHHHHcC
Q 002012 928 NEIAVAILKG 937 (982)
Q Consensus 928 ~~la~~~l~~ 937 (982)
.++|+.-+.+
T Consensus 620 EA~Ar~~~~d 629 (764)
T KOG0480|consen 620 EARARVECRD 629 (764)
T ss_pred HHHHhhhhhh
Confidence 5666655544
No 439
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.58 E-value=1.6e-06 Score=94.25 Aligned_cols=137 Identities=17% Similarity=0.132 Sum_probs=93.8
Q ss_pred HHHHHHHhccCCCCC-cEEeCCCCCcHHHHHHHHHHHhhcCCCCC------CCCCCeEEEEecccccccccccccHHHHH
Q 002012 278 IRRCIQILSRRTKNN-PVIIGEPGVGKTAIAEGLAQRIVRGDVPE------TLQNRKLISLDMASLVAGTCYRGDFEKRL 350 (982)
Q Consensus 278 i~~l~~~L~~~~~~~-iLL~GppGvGKT~la~~la~~l~~~~~p~------~l~~~~v~~l~~~~l~~~~~~~g~~e~~l 350 (982)
-+.+...+.+....| .||+||+|+||+++|..+|+.+.+...+. ......++.+... +.. ..-..+.+
T Consensus 6 ~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~----~~~-~~I~idqi 80 (290)
T PRK05917 6 WEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQ----GKG-RLHSIETP 80 (290)
T ss_pred HHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecC----CCC-CcCcHHHH
Confidence 355666666655555 55889999999999999999998754221 1112233333211 100 00113345
Q ss_pred HHHHHHHHhc---CCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhc--CCCeEEEEecCchhHhhhhhcChHHHhccc
Q 002012 351 KAVLKEVTKS---NGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLG--RGELRCIGATTLNEYRNYIEKDPALERRFQ 425 (982)
Q Consensus 351 ~~l~~~~~~~---~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le--~g~i~vI~at~~~~~~~~~~~d~al~rRf~ 425 (982)
+++.+.+... ++.-|++||++|.|. .+++|.|+..+| .+.+++|..|+..+ .+.|.++|||+
T Consensus 81 R~l~~~~~~~p~e~~~kv~ii~~ad~mt--------~~AaNaLLK~LEEPp~~~~fiL~~~~~~-----~ll~TI~SRcq 147 (290)
T PRK05917 81 RAIKKQIWIHPYESPYKIYIIHEADRMT--------LDAISAFLKVLEDPPQHGVIILTSAKPQ-----RLPPTIRSRSL 147 (290)
T ss_pred HHHHHHHhhCccCCCceEEEEechhhcC--------HHHHHHHHHHhhcCCCCeEEEEEeCChh-----hCcHHHHhcce
Confidence 5666655432 344699999999997 678899999998 45788888888877 78999999999
Q ss_pred eEEecCC
Q 002012 426 QVFCDQP 432 (982)
Q Consensus 426 ~i~i~~P 432 (982)
.+.|+.+
T Consensus 148 ~~~~~~~ 154 (290)
T PRK05917 148 SIHIPME 154 (290)
T ss_pred EEEccch
Confidence 9998775
No 440
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.57 E-value=6e-08 Score=113.22 Aligned_cols=149 Identities=22% Similarity=0.324 Sum_probs=93.9
Q ss_pred CCCCcccchHHHHHHHHHhccCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEe--------------
Q 002012 267 KLDPVIGRDDEIRRCIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLD-------------- 332 (982)
Q Consensus 267 ~l~~liG~~~~i~~l~~~L~~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~-------------- 332 (982)
.+.+++|+...++.+.-. -....+++|+||||+|||++++.++..+........+....++++.
T Consensus 189 d~~~v~Gq~~~~~al~la--a~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~~~rPf 266 (506)
T PRK09862 189 DLSDVIGQEQGKRGLEIT--AAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPF 266 (506)
T ss_pred CeEEEECcHHHHhhhhee--ccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCcCCCCc
Confidence 577889988766665333 2356689999999999999999999776432211122222222211
Q ss_pred --------cccccccccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCCC------
Q 002012 333 --------MASLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRGE------ 398 (982)
Q Consensus 333 --------~~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g~------ 398 (982)
...+.+| ... .+ -..+...+++ +|||||++.+. ..+++.|++.|+.+.
T Consensus 267 r~ph~~~s~~~l~GG-----g~~--~~--pG~l~~A~gG-vLfLDEi~e~~--------~~~~~~L~~~LE~g~v~I~r~ 328 (506)
T PRK09862 267 RSPHHSASLTAMVGG-----GAI--PG--PGEISLAHNG-VLFLDELPEFE--------RRTLDALREPIESGQIHLSRT 328 (506)
T ss_pred cCCCccchHHHHhCC-----Cce--eh--hhHhhhccCC-EEecCCchhCC--------HHHHHHHHHHHHcCcEEEecC
Confidence 0111111 100 00 1123333443 89999999875 677888999887654
Q ss_pred ---------eEEEEecCchhHhhh----------------hhcChHHHhccc-eEEecCCCHH
Q 002012 399 ---------LRCIGATTLNEYRNY----------------IEKDPALERRFQ-QVFCDQPSVE 435 (982)
Q Consensus 399 ---------i~vI~at~~~~~~~~----------------~~~d~al~rRf~-~i~i~~Ps~~ 435 (982)
+.+|+|+|+.+..-+ -.++.++++||+ .+.++.|+.+
T Consensus 329 g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~ 391 (506)
T PRK09862 329 RAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPG 391 (506)
T ss_pred CcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHH
Confidence 589999998762111 247789999998 7888888765
No 441
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.55 E-value=4.3e-06 Score=85.80 Aligned_cols=177 Identities=23% Similarity=0.338 Sum_probs=121.2
Q ss_pred cccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEecccccccccccccc
Q 002012 663 KRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRLV 742 (982)
Q Consensus 663 ~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l~ 742 (982)
..++|-+...+.+.+--.+...|. |-.|+|++|..||||+++.|++...+...+..+|.++-.++.+-
T Consensus 60 ~~l~Gvd~qk~~L~~NT~~F~~G~-----pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~~L------- 127 (287)
T COG2607 60 ADLVGVDRQKEALVRNTEQFAEGL-----PANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLATL------- 127 (287)
T ss_pred HHHhCchHHHHHHHHHHHHHHcCC-----cccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHhhH-------
Confidence 457888888888887777776654 34479999999999999999999999887888888877665321
Q ss_pred CCCCCccccccCCchhHHHhhCCCe-EEEEcccccc-CHHHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCC---h
Q 002012 743 GAPPGYVGYEEGGQLTEVVRRRPYS-VVLFDEIEKA-HQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIG---S 817 (982)
Q Consensus 743 g~~~g~vg~~~~~~l~~~l~~~~~~-Vl~lDEidkl-~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~---~ 817 (982)
..|.+.++..|.. |||+|+.--= +.+....|-.+||.|--- ...|++|-+|||.. .
T Consensus 128 ------------p~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~-------rP~NVl~YATSNRRHLl~ 188 (287)
T COG2607 128 ------------PDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALEGGVEG-------RPANVLFYATSNRRHLLP 188 (287)
T ss_pred ------------HHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhcCCccc-------CCCeEEEEEecCCccccc
Confidence 1366777777654 7888876433 344677777788754322 23689999999963 2
Q ss_pred HHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHHH
Q 002012 818 HYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNR 882 (982)
Q Consensus 818 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~ 882 (982)
+...+. ...++. ..- .+.+...+ .|-+||.-.+.|.|.+.++...|++...+.
T Consensus 189 e~~~dn----~~~~~e--ih~----~eaveEKl--SlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~ 241 (287)
T COG2607 189 EDMKDN----EGSTGE--IHP----SEAVEEKL--SLSDRFGLWLSFYPCDQDEYLKIVDHYAKH 241 (287)
T ss_pred HhhhhC----CCcccc--cCh----hHHHHHhh--chhhhcceeecccCCCHHHHHHHHHHHHHH
Confidence 222221 111100 001 11222222 366899999999999999999999999876
No 442
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.52 E-value=2.8e-07 Score=102.79 Aligned_cols=109 Identities=19% Similarity=0.299 Sum_probs=72.6
Q ss_pred ceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccccccccCCCCCccccccCCchhHHHhhCCCeEEEEcc
Q 002012 694 ASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDE 773 (982)
Q Consensus 694 ~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~~~~~Vl~lDE 773 (982)
.+++|+||+|||||++|.+||+.+...+..++.+++.++........ + . .........+.+..++ +|+||+
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~-~-~-----~~~~~~~~~~~l~~~D--LLIIDD 254 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIR-F-N-----NDKELEEVYDLLINCD--LLIIDD 254 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHH-h-c-----cchhHHHHHHHhccCC--EEEEec
Confidence 35999999999999999999999987777888888877643211100 0 0 0000011134455554 999999
Q ss_pred cc--ccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCChHHHH
Q 002012 774 IE--KAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYIL 821 (982)
Q Consensus 774 id--kl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~i~ 821 (982)
+. ..++..++.|+.+++... . .+.-+|+|||.....+.
T Consensus 255 lG~e~~t~~~~~~Lf~iin~R~-~---------~~k~tIiTSNl~~~el~ 294 (329)
T PRK06835 255 LGTEKITEFSKSELFNLINKRL-L---------RQKKMIISTNLSLEELL 294 (329)
T ss_pred cCCCCCCHHHHHHHHHHHHHHH-H---------CCCCEEEECCCCHHHHH
Confidence 94 456778888999987521 1 12348899998876543
No 443
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.52 E-value=1e-07 Score=97.17 Aligned_cols=107 Identities=21% Similarity=0.332 Sum_probs=71.8
Q ss_pred eEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccccccccCCCCCccccccCCchhHHHhhCCCeEEEEccc
Q 002012 695 SFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEI 774 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~~~~~Vl~lDEi 774 (982)
+++|+||||||||++|.++++.+...+..+..++.+++.+.-... +. ......+...+.+++ +|+|||+
T Consensus 49 ~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~--------~~-~~~~~~~~~~l~~~d--lLilDDl 117 (178)
T PF01695_consen 49 NLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQS--------RS-DGSYEELLKRLKRVD--LLILDDL 117 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCC--------HC-CTTHCHHHHHHHTSS--CEEEETC
T ss_pred EEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceecccccc--------cc-ccchhhhcCcccccc--Eeccccc
Confidence 599999999999999999999887778888888888875432111 10 011123556666665 9999999
Q ss_pred ccc--CHHHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCChHHHHHh
Q 002012 775 EKA--HQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILET 823 (982)
Q Consensus 775 dkl--~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~i~~~ 823 (982)
... .....+.|+++++... .+.-.|+|||.....+.+.
T Consensus 118 G~~~~~~~~~~~l~~ii~~R~-----------~~~~tIiTSN~~~~~l~~~ 157 (178)
T PF01695_consen 118 GYEPLSEWEAELLFEIIDERY-----------ERKPTIITSNLSPSELEEV 157 (178)
T ss_dssp TSS---HHHHHCTHHHHHHHH-----------HT-EEEEEESS-HHHHHT-
T ss_pred ceeeecccccccchhhhhHhh-----------cccCeEeeCCCchhhHhhc
Confidence 765 4557788888888521 1224667999988766554
No 444
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.52 E-value=6.7e-07 Score=99.68 Aligned_cols=218 Identities=17% Similarity=0.221 Sum_probs=135.8
Q ss_pred HhhhcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCC--CceEEEecccccccc
Q 002012 659 EVLHKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTE--NALVRIDMSEYMEKH 736 (982)
Q Consensus 659 ~~l~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~--~~~v~i~~s~~~~~~ 736 (982)
..-...+.|.+..+..+...+.....+ +..+++.+.|-||||||.+...+-..+-.+. ...+++||.++....
T Consensus 146 t~~p~~l~gRe~e~~~v~~F~~~hle~-----~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~ 220 (529)
T KOG2227|consen 146 TAPPGTLKGRELEMDIVREFFSLHLEL-----NTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEAS 220 (529)
T ss_pred cCCCCCccchHHHHHHHHHHHHhhhhc-----ccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchH
Confidence 334467889888888888888766443 2334699999999999999886666552222 234889998865543
Q ss_pred ccc-cccCCC-CCccccccCCchhHHH----hhCC-CeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEE
Q 002012 737 SVS-RLVGAP-PGYVGYEEGGQLTEVV----RRRP-YSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVV 809 (982)
Q Consensus 737 ~~~-~l~g~~-~g~vg~~~~~~l~~~l----~~~~-~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~ii 809 (982)
.+- .+++.- .+.++...+.++.+.+ .... .=|+++||+|.+...-+..|+.+++--.+. .+++++
T Consensus 221 aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp--------~sr~iL 292 (529)
T KOG2227|consen 221 AIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLP--------NSRIIL 292 (529)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCC--------cceeee
Confidence 321 122111 0111111112222232 2222 349999999999988889999888864332 356777
Q ss_pred EEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccc---cccccCCCChhHHHHHHHHHHHHHHHH
Q 002012 810 IMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRID---EYIVFQPLDSKEISKIVEIQMNRVKDR 886 (982)
Q Consensus 810 I~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid---~ii~F~pl~~~~l~~il~~~l~~~~~~ 886 (982)
|..+|.-. +. ..|-|.|..|+. ..+.|+||+.+++.+|+...+...
T Consensus 293 iGiANslD--lT--------------------------dR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~--- 341 (529)
T KOG2227|consen 293 IGIANSLD--LT--------------------------DRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEE--- 341 (529)
T ss_pred eeehhhhh--HH--------------------------HHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcc---
Confidence 77777421 11 124455555443 379999999999999999888752
Q ss_pred HHhCCCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHHH
Q 002012 887 LKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQL 925 (982)
Q Consensus 887 ~~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~ 925 (982)
....+-+.+++..+.+.-.+....|-+-.+++..
T Consensus 342 -----~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~a 375 (529)
T KOG2227|consen 342 -----STSIFLNAAIELCARKVAAPSGDLRKALDVCRRA 375 (529)
T ss_pred -----cccccchHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 2244555788888887443333245555555543
No 445
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.50 E-value=4.9e-07 Score=96.49 Aligned_cols=114 Identities=15% Similarity=0.278 Sum_probs=71.5
Q ss_pred CCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccccccccccH---HHHHHHHHHHHHhcCCCeEEE
Q 002012 291 NNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGTCYRGDF---EKRLKAVLKEVTKSNGQIILF 367 (982)
Q Consensus 291 ~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~~~~g~~---e~~l~~l~~~~~~~~~~~IL~ 367 (982)
.+++|+|+||||||+++.+++..+... +..++.+++.++.... .+.+ ......++..+... -+|+
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~-------g~~v~~it~~~l~~~l--~~~~~~~~~~~~~~l~~l~~~---dlLv 167 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLR-------GKSVLIITVADIMSAM--KDTFSNSETSEEQLLNDLSNV---DLLV 167 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhc-------CCeEEEEEHHHHHHHH--HHHHhhccccHHHHHHHhccC---CEEE
Confidence 579999999999999999999998553 6788888877766321 1111 11123455555432 3999
Q ss_pred EccchhhhhCCCCCchhhHHHHHHhhhc---CCCeEEEEecCchh--HhhhhhcChHHHhcc
Q 002012 368 IDELHTIIGAGNQSGAMDASNMLKPMLG---RGELRCIGATTLNE--YRNYIEKDPALERRF 424 (982)
Q Consensus 368 IDEi~~l~~~~~~~~~~~~~~~L~~~le---~g~i~vI~at~~~~--~~~~~~~d~al~rRf 424 (982)
|||++.... +.-...+|.++++ .....+|.+||... +.+ .++..+.+|+
T Consensus 168 IDDig~~~~------s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l~~--~~g~ri~sRl 221 (244)
T PRK07952 168 IDEIGVQTE------SRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMTK--LLGERVMDRM 221 (244)
T ss_pred EeCCCCCCC------CHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHHHH--HhChHHHHHH
Confidence 999987531 1122345666665 23456777777643 322 2456667776
No 446
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.47 E-value=2.8e-06 Score=100.09 Aligned_cols=183 Identities=18% Similarity=0.213 Sum_probs=117.9
Q ss_pred CcccchHHHHHHHHHhcc--CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccccc---c---
Q 002012 270 PVIGRDDEIRRCIQILSR--RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGT---C--- 341 (982)
Q Consensus 270 ~liG~~~~i~~l~~~L~~--~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~---~--- 341 (982)
.++|....+..++.-+.. ....+++++|++||||+++|+++...... .+.+++.+||+.+.... .
T Consensus 140 ~lig~s~~~~~~~~~i~~~~~~~~~vli~ge~g~gk~~~a~~ih~~s~~-------~~~~~i~~~c~~~~~~~~~~~lfg 212 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSAR-------SEKPLVTLNCAALNESLLESELFG 212 (441)
T ss_pred ceEecCHHHHHHHHHHhhccCCCCeEEEEecCCCCHHHHHHHHHHcCCC-------CCCCeeeeeCCCCCHHHHHHHhcC
Confidence 477887777766654322 35567899999999999999999876532 26789999988654210 0
Q ss_pred -ccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCC-------------CeEEEEecCc
Q 002012 342 -YRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRG-------------ELRCIGATTL 407 (982)
Q Consensus 342 -~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g-------------~i~vI~at~~ 407 (982)
..|.+..........+...+ +.+||||||+.|. ...+..|..+++.+ ++++|++|+.
T Consensus 213 ~~~~~~~~~~~~~~g~~~~a~-~gtl~ldei~~l~--------~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~ 283 (441)
T PRK10365 213 HEKGAFTGADKRREGRFVEAD-GGTLFLDEIGDIS--------PMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHR 283 (441)
T ss_pred CCCCCcCCCCcCCCCceeECC-CCEEEEeccccCC--------HHHHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCC
Confidence 00000000000000112223 4589999999996 56677888888755 3578999888
Q ss_pred hhHhh--hhhcChHHHhccceEEecCCC----HHHHHHHHHHHHHHHhhhcC---CccChHHHHHHHHHh
Q 002012 408 NEYRN--YIEKDPALERRFQQVFCDQPS----VENTISILRGLRERYELHHG---VKISDSALVSAAVLA 468 (982)
Q Consensus 408 ~~~~~--~~~~d~al~rRf~~i~i~~Ps----~~e~~~IL~~~~~~~~~~~~---v~i~~~~l~~~~~~s 468 (982)
+.... .-...+.|..||..+.+..|+ .+|+..+++.+..++...++ ..++++++..+..+.
T Consensus 284 ~~~~~~~~~~~~~~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~ 353 (441)
T PRK10365 284 DLAAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYD 353 (441)
T ss_pred CHHHHHHcCCchHHHHHHhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCC
Confidence 75321 112556677788777777776 44666777777777765444 458999998888774
No 447
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.46 E-value=7.4e-06 Score=90.14 Aligned_cols=146 Identities=11% Similarity=0.048 Sum_probs=97.8
Q ss_pred HHHHHHHHhccCCCCCc-EEeCCCCCcHHHHHHHHHHHhhcCC---CCCCCCCCeEEEEecccccccccccccHHHHHHH
Q 002012 277 EIRRCIQILSRRTKNNP-VIIGEPGVGKTAIAEGLAQRIVRGD---VPETLQNRKLISLDMASLVAGTCYRGDFEKRLKA 352 (982)
Q Consensus 277 ~i~~l~~~L~~~~~~~i-LL~GppGvGKT~la~~la~~l~~~~---~p~~l~~~~v~~l~~~~l~~~~~~~g~~e~~l~~ 352 (982)
.++.+.+.+..+...|+ ||+|+.|+||+++++.+++.+.+.. ++..-....+..++.. |.. -..+.++.
T Consensus 4 ~~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~----g~~---i~vd~Ir~ 76 (299)
T PRK07132 4 WIKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIF----DKD---LSKSEFLS 76 (299)
T ss_pred HHHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccC----CCc---CCHHHHHH
Confidence 45566666666666665 5889999999999999999985532 1110001122333310 100 11233445
Q ss_pred HHHHHHhc----CCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhc--CCCeEEEEecCchhHhhhhhcChHHHhccce
Q 002012 353 VLKEVTKS----NGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLG--RGELRCIGATTLNEYRNYIEKDPALERRFQQ 426 (982)
Q Consensus 353 l~~~~~~~----~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le--~g~i~vI~at~~~~~~~~~~~d~al~rRf~~ 426 (982)
+.+.+.-. ++.-|++||+++.+. ..++|.|+..++ ...+.+|.+|+... .+-|++++||+.
T Consensus 77 l~~~~~~~~~~~~~~KvvII~~~e~m~--------~~a~NaLLK~LEEPp~~t~~il~~~~~~-----kll~TI~SRc~~ 143 (299)
T PRK07132 77 AINKLYFSSFVQSQKKILIIKNIEKTS--------NSLLNALLKTIEEPPKDTYFLLTTKNIN-----KVLPTIVSRCQV 143 (299)
T ss_pred HHHHhccCCcccCCceEEEEecccccC--------HHHHHHHHHHhhCCCCCeEEEEEeCChH-----hChHHHHhCeEE
Confidence 55555322 356699999999885 567788888888 35677777777554 688999999999
Q ss_pred EEecCCCHHHHHHHHH
Q 002012 427 VFCDQPSVENTISILR 442 (982)
Q Consensus 427 i~i~~Ps~~e~~~IL~ 442 (982)
+.+.+|+.+++...|.
T Consensus 144 ~~f~~l~~~~l~~~l~ 159 (299)
T PRK07132 144 FNVKEPDQQKILAKLL 159 (299)
T ss_pred EECCCCCHHHHHHHHH
Confidence 9999999988777664
No 448
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.44 E-value=4.2e-07 Score=87.97 Aligned_cols=118 Identities=28% Similarity=0.276 Sum_probs=69.0
Q ss_pred eEEeecCCCCchHHHHHHHHHHhcCCCCceEEEecccccccccccc---ccC-CCCCccccccCCchhHHHhhCCCeEEE
Q 002012 695 SFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSR---LVG-APPGYVGYEEGGQLTEVVRRRPYSVVL 770 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~---l~g-~~~g~vg~~~~~~l~~~l~~~~~~Vl~ 770 (982)
+++|+||||||||++++.++..+......++.++++.......... .+. ......+......+...++..+..||+
T Consensus 4 ~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vii 83 (148)
T smart00382 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVLI 83 (148)
T ss_pred EEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 5999999999999999999999854433578888876543321110 011 111111111112344555555568999
Q ss_pred EccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEEecCC
Q 002012 771 FDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNI 815 (982)
Q Consensus 771 lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~ 815 (982)
+||++.+................ .........+..+|+++|.
T Consensus 84 iDei~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 84 LDEITSLLDAEQEALLLLLEELR---LLLLLKSEKNLTVILTTND 125 (148)
T ss_pred EECCcccCCHHHHHHHHhhhhhH---HHHHHHhcCCCEEEEEeCC
Confidence 99999998876666544311000 0000011245788888885
No 449
>PRK08181 transposase; Validated
Probab=98.44 E-value=3.8e-07 Score=98.76 Aligned_cols=103 Identities=16% Similarity=0.261 Sum_probs=63.2
Q ss_pred CCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccccccccccHHHHHHHHHHHHHhcCCCeEEEE
Q 002012 289 TKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFI 368 (982)
Q Consensus 289 ~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~I 368 (982)
...|++|+||||||||+++.+++..+... +..++++++.++..... ...........+..+... -+|+|
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~-------g~~v~f~~~~~L~~~l~-~a~~~~~~~~~l~~l~~~---dLLII 173 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIEN-------GWRVLFTRTTDLVQKLQ-VARRELQLESAIAKLDKF---DLLIL 173 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHc-------CCceeeeeHHHHHHHHH-HHHhCCcHHHHHHHHhcC---CEEEE
Confidence 45689999999999999999999988543 67888888766654211 000111223344444433 39999
Q ss_pred ccchhhhhCCCCCchhhHHHHHHhhhcC--CCeEEEEecCch
Q 002012 369 DELHTIIGAGNQSGAMDASNMLKPMLGR--GELRCIGATTLN 408 (982)
Q Consensus 369 DEi~~l~~~~~~~~~~~~~~~L~~~le~--g~i~vI~at~~~ 408 (982)
||++.+... ....+.|.++++. ++-.+|.|||.+
T Consensus 174 DDlg~~~~~------~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 174 DDLAYVTKD------QAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred eccccccCC------HHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 999976422 2223344444431 123567777664
No 450
>PRK06526 transposase; Provisional
Probab=98.44 E-value=1.8e-07 Score=100.82 Aligned_cols=106 Identities=21% Similarity=0.344 Sum_probs=69.6
Q ss_pred eEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccccccccCCCCCccccccCCchhHHHhh-CCCeEEEEcc
Q 002012 695 SFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRLVGAPPGYVGYEEGGQLTEVVRR-RPYSVVLFDE 773 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~-~~~~Vl~lDE 773 (982)
+++|+||||||||++|.+|+..+...+..+..+.+.++........ . .+.+...+.. ....+|+|||
T Consensus 100 nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~----~--------~~~~~~~l~~l~~~dlLIIDD 167 (254)
T PRK06526 100 NVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAH----H--------AGRLQAELVKLGRYPLLIVDE 167 (254)
T ss_pred eEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHH----h--------cCcHHHHHHHhccCCEEEEcc
Confidence 5999999999999999999998865566655555555433211110 0 0112222222 3456999999
Q ss_pred ccccC--HHHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCChHHHHHh
Q 002012 774 IEKAH--QDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILET 823 (982)
Q Consensus 774 idkl~--~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~i~~~ 823 (982)
++..+ +..++.|+++++... .+..+|+|||.+.....+.
T Consensus 168 ~g~~~~~~~~~~~L~~li~~r~-----------~~~s~IitSn~~~~~w~~~ 208 (254)
T PRK06526 168 VGYIPFEPEAANLFFQLVSSRY-----------ERASLIVTSNKPFGRWGEV 208 (254)
T ss_pred cccCCCCHHHHHHHHHHHHHHH-----------hcCCEEEEcCCCHHHHHHH
Confidence 99764 777888999987411 1234889999887755543
No 451
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.43 E-value=2.6e-06 Score=100.37 Aligned_cols=214 Identities=17% Similarity=0.188 Sum_probs=121.3
Q ss_pred hhhhHHHhhcCCCCCcccchHHHHHHHHHhcc----CC-CCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEE
Q 002012 256 GNDLTELARSGKLDPVIGRDDEIRRCIQILSR----RT-KNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLIS 330 (982)
Q Consensus 256 ~~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~----~~-~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~ 330 (982)
..+|.++++|.+++++.....-++.+...|.. .. ..-+||+|||||||||+++.||+++ +..+.+
T Consensus 6 ~~~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el----------g~~v~E 75 (519)
T PF03215_consen 6 SEPWVEKYAPKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL----------GFEVQE 75 (519)
T ss_pred cCccchhcCCCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh----------CCeeEE
Confidence 35689999999999998877644444443332 22 2335678999999999999999998 444443
Q ss_pred E-ecccccc----cccccc------cHHHHHHHHHHHH-----Hh----------cCCCeEEEEccchhhhhCCCCCchh
Q 002012 331 L-DMASLVA----GTCYRG------DFEKRLKAVLKEV-----TK----------SNGQIILFIDELHTIIGAGNQSGAM 384 (982)
Q Consensus 331 l-~~~~l~~----~~~~~g------~~e~~l~~l~~~~-----~~----------~~~~~IL~IDEi~~l~~~~~~~~~~ 384 (982)
- +...+.. ...+.+ ++.... ..|.+. +. ...+.||+|||+-.++... ..
T Consensus 76 w~np~~~~~~~~~~~d~~s~~~~~~~f~sq~-~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~----~~ 150 (519)
T PF03215_consen 76 WINPVSFRESDNQEDDFESDFNKFDEFLSQS-DKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRD----TS 150 (519)
T ss_pred ecCCCCccccccccccccccccccccccchh-hhhccccccccccccccccCCCcCCCceEEEeeccccccchh----HH
Confidence 2 1111000 000111 111111 112211 10 0235699999998765322 25
Q ss_pred hHHHHHHhhhcCC---CeEEEEecC--c---hhHh-----hhhhcChHHHhc--cceEEecCCCHHHHHHHHHHHHHHHh
Q 002012 385 DASNMLKPMLGRG---ELRCIGATT--L---NEYR-----NYIEKDPALERR--FQQVFCDQPSVENTISILRGLRERYE 449 (982)
Q Consensus 385 ~~~~~L~~~le~g---~i~vI~at~--~---~~~~-----~~~~~d~al~rR--f~~i~i~~Ps~~e~~~IL~~~~~~~~ 449 (982)
.+.+.|..++..+ .+++|.+-+ . ..+. -...+++.+... +..|.|.+-.+.-+.+.|+.++..-.
T Consensus 151 ~f~~~L~~~l~~~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FNpIa~T~mkKaL~rI~~~E~ 230 (519)
T PF03215_consen 151 RFREALRQYLRSSRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFNPIAPTFMKKALKRILKKEA 230 (519)
T ss_pred HHHHHHHHHHHcCCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHHh
Confidence 5667788877644 344444411 0 1111 011356777774 46888988888888888887776531
Q ss_pred h-hcC-Ccc--ChHHHHHHHHHhhhhhccCCCcchhhHHHHHHHH
Q 002012 450 L-HHG-VKI--SDSALVSAAVLADRYITERFLPDKAIDLVDEAAA 490 (982)
Q Consensus 450 ~-~~~-v~i--~~~~l~~~~~~s~r~i~~~~~p~~a~~lld~a~~ 490 (982)
. ..+ ... ..+.++.++..|.+.| +.|+.-|...+.
T Consensus 231 ~~~~~~~~~p~~~~~l~~I~~~s~GDI------RsAIn~LQf~~~ 269 (519)
T PF03215_consen 231 RSSSGKNKVPDKQSVLDSIAESSNGDI------RSAINNLQFWCL 269 (519)
T ss_pred hhhcCCccCCChHHHHHHHHHhcCchH------HHHHHHHHHHhc
Confidence 1 112 122 2345888888776655 556665555553
No 452
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.42 E-value=4.9e-07 Score=96.49 Aligned_cols=109 Identities=21% Similarity=0.282 Sum_probs=70.5
Q ss_pred eEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccccccccCCCCCccccccCCchhHHHhhCCCeEEEEccc
Q 002012 695 SFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEI 774 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~~~~~Vl~lDEi 774 (982)
+++|+|+||||||+++.+|+..+...+..++.++.+++..... ..+.. . .. ....+.+.+.. .++|+|||+
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~--~~~~~-~---~~-~~~~~l~~l~~--~dlLvIDDi 171 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMK--DTFSN-S---ET-SEEQLLNDLSN--VDLLVIDEI 171 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHH--HHHhh-c---cc-cHHHHHHHhcc--CCEEEEeCC
Confidence 5999999999999999999999976677788887777643210 00100 0 00 01123444443 459999999
Q ss_pred cccCH--HHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCChHHHHH
Q 002012 775 EKAHQ--DVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILE 822 (982)
Q Consensus 775 dkl~~--~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~i~~ 822 (982)
+.... .....|.++++. ++. .+.-+|+|||...+.+..
T Consensus 172 g~~~~s~~~~~~l~~Ii~~-Ry~---------~~~~tiitSNl~~~~l~~ 211 (244)
T PRK07952 172 GVQTESRYEKVIINQIVDR-RSS---------SKRPTGMLTNSNMEEMTK 211 (244)
T ss_pred CCCCCCHHHHHHHHHHHHH-HHh---------CCCCEEEeCCCCHHHHHH
Confidence 87643 345577788874 221 134688999988765543
No 453
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=98.42 E-value=3.3e-06 Score=98.05 Aligned_cols=191 Identities=21% Similarity=0.291 Sum_probs=115.7
Q ss_pred hhcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEec----ccccc-c
Q 002012 661 LHKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDM----SEYME-K 735 (982)
Q Consensus 661 l~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~----s~~~~-~ 735 (982)
.+++++|+++++..|.+.++.+..++.. .++ .++|+||||+|||++|+.|++.+- ..++..+.. +.+.+ +
T Consensus 74 fF~d~yGlee~ieriv~~l~~Aa~gl~~-~~~--IL~LvGPpG~GKSsLa~~la~~le--~~~~Y~~kg~~~~sP~~e~P 148 (644)
T PRK15455 74 AFEEFYGMEEAIEQIVSYFRHAAQGLEE-KKQ--ILYLLGPVGGGKSSLAERLKSLME--RVPIYVLKANGERSPVNESP 148 (644)
T ss_pred chhcccCcHHHHHHHHHHHHHHHHhcCC-CCc--eEEEecCCCCCchHHHHHHHHHHH--hCcceeecCCCCCCCCCCCC
Confidence 4567999999999999999877777753 233 499999999999999999999881 113333322 11000 0
Q ss_pred ------c----ccccccCCC---------------------------------------------CC---------cccc
Q 002012 736 ------H----SVSRLVGAP---------------------------------------------PG---------YVGY 751 (982)
Q Consensus 736 ------~----~~~~l~g~~---------------------------------------------~g---------~vg~ 751 (982)
. .+...+|-+ |+ -+|.
T Consensus 149 L~L~p~~~~~~~le~~~gi~~r~i~g~lsP~~r~rL~e~~Gd~~~~~V~r~~~S~~~riGIg~~eP~D~~nQD~s~L~G~ 228 (644)
T PRK15455 149 LGLFDPDEDGPILEEEYGIPRRYLGTIMSPWAVKRLHEFGGDISKFRVVKVYPSILRQIAIAKTEPGDENNQDISSLVGK 228 (644)
T ss_pred CCCCChhhhHHHHHHHhCCCccccCCCCCHHHHHHHHHhCCCchheEEEEEeeccccceEEEecCCCCCCCCChhHhccc
Confidence 0 000001111 00 0010
Q ss_pred ccCC-------------chhHHHhhCCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCChH
Q 002012 752 EEGG-------------QLTEVVRRRPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSH 818 (982)
Q Consensus 752 ~~~~-------------~l~~~l~~~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~ 818 (982)
...+ .+-+.+..+..|++=|=|+-|++.+++.-||.+.++|.+.-+.|...-.-+.+||+.||-..-
T Consensus 229 vdi~kl~~ys~~dp~aysf~G~L~~aNrGl~EFvEm~K~~~~~L~~LLtatQE~~i~~~~~~~~i~~D~vIiaHsNE~E~ 308 (644)
T PRK15455 229 VDIRKLEHYAQNDPDAYSYSGGLCRANQGLLEFVEMFKAPIKVLHPLLTATQEGNYNGTEGIGAIPFDGIILAHSNESEW 308 (644)
T ss_pred eeHHhhhccCCCCCccccCCchhhhccCCcEeeHHHhcCcHHHHHHhcCCCccCcccCCCCcceeccceeEEecCCHHHH
Confidence 0000 011223344456887889999999999999999999998665553333456899999994321
Q ss_pred HHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCCh-hHHHHHHHHHHH
Q 002012 819 YILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDS-KEISKIVEIQMN 881 (982)
Q Consensus 819 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~-~~l~~il~~~l~ 881 (982)
.. ........+|++|+ .+|..|..-+ .+=.+|-+..+.
T Consensus 309 --~~----------------------F~~nk~nEA~~DRi-~~V~VPY~lr~~eE~kIYeKll~ 347 (644)
T PRK15455 309 --QT----------------------FRNNKNNEAFLDRI-YIVKVPYCLRVSEEIKIYEKLLR 347 (644)
T ss_pred --HH----------------------HhcCccchhhhceE-EEEeCCccCChhHHHHHHHHHhc
Confidence 00 11133567899999 5677665544 344455544443
No 454
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.41 E-value=7.3e-07 Score=86.10 Aligned_cols=109 Identities=18% Similarity=0.286 Sum_probs=69.3
Q ss_pred CCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccc--------------cccccccHHHHHHHHH
Q 002012 289 TKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVA--------------GTCYRGDFEKRLKAVL 354 (982)
Q Consensus 289 ~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~--------------~~~~~g~~e~~l~~l~ 354 (982)
....++++||||+|||++++.+++.+.....+.. ...++.+++..... ..............+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~ 80 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKN--HPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLI 80 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCC--CEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccC--CCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHH
Confidence 4567899999999999999999998743100000 46777777543331 1111122333344444
Q ss_pred HHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCCCeEEEEecCc
Q 002012 355 KEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRGELRCIGATTL 407 (982)
Q Consensus 355 ~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g~i~vI~at~~ 407 (982)
+.+.. .+..+|+|||+|.+. .....+.|+.+.+...+.+|.++++
T Consensus 81 ~~l~~-~~~~~lviDe~~~l~-------~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 81 DALDR-RRVVLLVIDEADHLF-------SDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp HHHHH-CTEEEEEEETTHHHH-------THHHHHHHHHHTCSCBEEEEEEESS
T ss_pred HHHHh-cCCeEEEEeChHhcC-------CHHHHHHHHHHHhCCCCeEEEEECh
Confidence 44444 444699999999985 1678888999999999999998887
No 455
>PRK08181 transposase; Validated
Probab=98.39 E-value=1.1e-06 Score=95.18 Aligned_cols=107 Identities=16% Similarity=0.248 Sum_probs=70.9
Q ss_pred eEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccccccccCCCCCccccccCCchhHHHhhCCCeEEEEccc
Q 002012 695 SFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEI 774 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~~~~~Vl~lDEi 774 (982)
+++|+||||||||++|.+++..+...+..++.+++.++........ ..+ ....+...+.+. .+|+|||+
T Consensus 108 nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~----~~~-----~~~~~l~~l~~~--dLLIIDDl 176 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVAR----REL-----QLESAIAKLDKF--DLLILDDL 176 (269)
T ss_pred eEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHH----hCC-----cHHHHHHHHhcC--CEEEEecc
Confidence 5999999999999999999998866677777777776644321110 000 001123334443 49999999
Q ss_pred cccC--HHHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCChHHHHHh
Q 002012 775 EKAH--QDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILET 823 (982)
Q Consensus 775 dkl~--~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~i~~~ 823 (982)
+..+ +..++.|+++++.. +. +.-+|+|||.+...+...
T Consensus 177 g~~~~~~~~~~~Lf~lin~R-~~----------~~s~IiTSN~~~~~w~~~ 216 (269)
T PRK08181 177 AYVTKDQAETSVLFELISAR-YE----------RRSILITANQPFGEWNRV 216 (269)
T ss_pred ccccCCHHHHHHHHHHHHHH-Hh----------CCCEEEEcCCCHHHHHHh
Confidence 8764 45677899999741 11 134889999887765543
No 456
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.39 E-value=5.3e-06 Score=90.49 Aligned_cols=146 Identities=16% Similarity=0.195 Sum_probs=97.9
Q ss_pred chHHHHHHHHHhccCCCCC-cEEeCCCCCcHHHHHHHHHHHhhcCCCCCC--------------CCCCeEEEEecccccc
Q 002012 274 RDDEIRRCIQILSRRTKNN-PVIIGEPGVGKTAIAEGLAQRIVRGDVPET--------------LQNRKLISLDMASLVA 338 (982)
Q Consensus 274 ~~~~i~~l~~~L~~~~~~~-iLL~GppGvGKT~la~~la~~l~~~~~p~~--------------l~~~~v~~l~~~~l~~ 338 (982)
+...++.+..++.++...| .||+|| +||+++|..+|+.+.+.+.... .....++.+...
T Consensus 7 q~~~~~~L~~~~~~~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~---- 80 (290)
T PRK07276 7 QPKVFQRFQTILEQDRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQ---- 80 (290)
T ss_pred HHHHHHHHHHHHHcCCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCC----
Confidence 4456777777777766665 478896 7899999999999987542110 112233333221
Q ss_pred cccccccHHHHHHHHHHHHHhc---CCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcC--CCeEEEEecCchhHhhh
Q 002012 339 GTCYRGDFEKRLKAVLKEVTKS---NGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGR--GELRCIGATTLNEYRNY 413 (982)
Q Consensus 339 ~~~~~g~~e~~l~~l~~~~~~~---~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~--g~i~vI~at~~~~~~~~ 413 (982)
|. .-..+.++++...+... ++.-|++||++|+|. ..+.|.|+..+|. .++.+|.+|+..+
T Consensus 81 ~~---~I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m~--------~~AaNaLLKtLEEPp~~t~~iL~t~~~~---- 145 (290)
T PRK07276 81 GQ---VIKTDTIRELVKNFSQSGYEGKQQVFIIKDADKMH--------VNAANSLLKVIEEPQSEIYIFLLTNDEN---- 145 (290)
T ss_pred CC---cCCHHHHHHHHHHHhhCcccCCcEEEEeehhhhcC--------HHHHHHHHHHhcCCCCCeEEEEEECChh----
Confidence 11 11233455665555432 344699999999997 6778888888874 4578888888777
Q ss_pred hhcChHHHhccceEEecCCCHHHHHHHHH
Q 002012 414 IEKDPALERRFQQVFCDQPSVENTISILR 442 (982)
Q Consensus 414 ~~~d~al~rRf~~i~i~~Ps~~e~~~IL~ 442 (982)
.+-|.++|||+.+.|+. +.++..++|.
T Consensus 146 -~lLpTI~SRcq~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 146 -KVLPTIKSRTQIFHFPK-NEAYLIQLLE 172 (290)
T ss_pred -hCchHHHHcceeeeCCC-cHHHHHHHHH
Confidence 78999999999999965 5665555553
No 457
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.37 E-value=1.2e-06 Score=97.79 Aligned_cols=119 Identities=20% Similarity=0.279 Sum_probs=71.6
Q ss_pred CCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEeccccccccc---ccccHHHHHHHHHHHHHhcCCCeE
Q 002012 289 TKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGTC---YRGDFEKRLKAVLKEVTKSNGQII 365 (982)
Q Consensus 289 ~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~~---~~g~~e~~l~~l~~~~~~~~~~~I 365 (982)
...+++|+||||||||+|+.++|+.+... +..++.++..++..... +.... .....+..+...+ +
T Consensus 182 ~~~~Lll~G~~GtGKThLa~aIa~~l~~~-------g~~V~y~t~~~l~~~l~~~~~~~~~--~~~~~~~~l~~~D---L 249 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNCIAKELLDR-------GKSVIYRTADELIEILREIRFNNDK--ELEEVYDLLINCD---L 249 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHC-------CCeEEEEEHHHHHHHHHHHHhccch--hHHHHHHHhccCC---E
Confidence 34789999999999999999999998653 67888888776653211 11111 1111244444433 8
Q ss_pred EEEccchhhhhCCCCCchhhHHHHHHhhhcCCCeEEEEecCchh--HhhhhhcChHHHhcc
Q 002012 366 LFIDELHTIIGAGNQSGAMDASNMLKPMLGRGELRCIGATTLNE--YRNYIEKDPALERRF 424 (982)
Q Consensus 366 L~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g~i~vI~at~~~~--~~~~~~~d~al~rRf 424 (982)
|+|||++...... .....+.+++.....++. .+|.|||... +.. .+++.+.+|+
T Consensus 250 LIIDDlG~e~~t~--~~~~~Lf~iin~R~~~~k-~tIiTSNl~~~el~~--~~~eri~SRL 305 (329)
T PRK06835 250 LIIDDLGTEKITE--FSKSELFNLINKRLLRQK-KMIISTNLSLEELLK--TYSERISSRL 305 (329)
T ss_pred EEEeccCCCCCCH--HHHHHHHHHHHHHHHCCC-CEEEECCCCHHHHHH--HHhHHHHHHH
Confidence 9999998753211 112233344444444443 4566666533 322 2467888886
No 458
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.36 E-value=1e-06 Score=95.01 Aligned_cols=103 Identities=23% Similarity=0.361 Sum_probs=66.4
Q ss_pred CCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEeccccccccc---ccccHHHHHHHHHHHHHhcCCCeE
Q 002012 289 TKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGTC---YRGDFEKRLKAVLKEVTKSNGQII 365 (982)
Q Consensus 289 ~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~~---~~g~~e~~l~~l~~~~~~~~~~~I 365 (982)
...|++|+||||||||+||-+++..+... |..++.+...+++...+ ..|..+..+ ...+...+ +
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~-------g~sv~f~~~~el~~~Lk~~~~~~~~~~~l---~~~l~~~d---l 170 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKA-------GISVLFITAPDLLSKLKAAFDEGRLEEKL---LRELKKVD---L 170 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHc-------CCeEEEEEHHHHHHHHHHHHhcCchHHHH---HHHhhcCC---E
Confidence 57799999999999999999999999632 78999998877764211 113333333 22233333 9
Q ss_pred EEEccchhhhhCCCCCchhhHHHHHHhhhcCCCeEEEEecCch
Q 002012 366 LFIDELHTIIGAGNQSGAMDASNMLKPMLGRGELRCIGATTLN 408 (982)
Q Consensus 366 L~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g~i~vI~at~~~ 408 (982)
|+|||+....... .....+..++....++... |.|+|.+
T Consensus 171 LIiDDlG~~~~~~--~~~~~~~q~I~~r~~~~~~--~~tsN~~ 209 (254)
T COG1484 171 LIIDDIGYEPFSQ--EEADLLFQLISRRYESRSL--IITSNLS 209 (254)
T ss_pred EEEecccCccCCH--HHHHHHHHHHHHHHhhccc--eeecCCC
Confidence 9999998864211 1122333444445555555 6777664
No 459
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.35 E-value=3.3e-07 Score=93.49 Aligned_cols=104 Identities=18% Similarity=0.296 Sum_probs=60.7
Q ss_pred CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccccccccccHHHHHHHHHHHHHhcCCCeEEE
Q 002012 288 RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILF 367 (982)
Q Consensus 288 ~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~ 367 (982)
....|++|+||||||||++|.++++.+... +..+++++..++....+.. .........++.+...+ +|+
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~-------g~~v~f~~~~~L~~~l~~~-~~~~~~~~~~~~l~~~d---lLi 113 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRK-------GYSVLFITASDLLDELKQS-RSDGSYEELLKRLKRVD---LLI 113 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHT-------T--EEEEEHHHHHHHHHCC-HCCTTHCHHHHHHHTSS---CEE
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccC-------CcceeEeecCceecccccc-ccccchhhhcCcccccc---Eec
Confidence 356799999999999999999999988663 7888999887776421110 00111234455555433 899
Q ss_pred EccchhhhhCCCCCchhhHHHHHHhhhc---CCCeEEEEecCchh
Q 002012 368 IDELHTIIGAGNQSGAMDASNMLKPMLG---RGELRCIGATTLNE 409 (982)
Q Consensus 368 IDEi~~l~~~~~~~~~~~~~~~L~~~le---~g~i~vI~at~~~~ 409 (982)
|||+.... .+....+.|..+++ ... ..|.|||...
T Consensus 114 lDDlG~~~------~~~~~~~~l~~ii~~R~~~~-~tIiTSN~~~ 151 (178)
T PF01695_consen 114 LDDLGYEP------LSEWEAELLFEIIDERYERK-PTIITSNLSP 151 (178)
T ss_dssp EETCTSS---------HHHHHCTHHHHHHHHHT--EEEEEESS-H
T ss_pred ccccceee------ecccccccchhhhhHhhccc-CeEeeCCCch
Confidence 99997542 11223344444443 123 5666887653
No 460
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.34 E-value=5.5e-06 Score=87.85 Aligned_cols=100 Identities=31% Similarity=0.487 Sum_probs=66.1
Q ss_pred EEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccccccccCCCCCccccccCCchhHHHhhCCCeEEEEcccc
Q 002012 696 FMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEIE 775 (982)
Q Consensus 696 lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~~~~~Vl~lDEid 775 (982)
-.+.||+|||||++.+.+|+.+ +..++.+||++-++...++++ +.+.+.. +.++.|||++
T Consensus 35 ~~~~GpagtGKtetik~La~~l---G~~~~vfnc~~~~~~~~l~ri---------------l~G~~~~--GaW~cfdefn 94 (231)
T PF12774_consen 35 GALSGPAGTGKTETIKDLARAL---GRFVVVFNCSEQMDYQSLSRI---------------LKGLAQS--GAWLCFDEFN 94 (231)
T ss_dssp EEEESSTTSSHHHHHHHHHHCT---T--EEEEETTSSS-HHHHHHH---------------HHHHHHH--T-EEEEETCC
T ss_pred CCCcCCCCCCchhHHHHHHHHh---CCeEEEecccccccHHHHHHH---------------HHHHhhc--Cchhhhhhhh
Confidence 5689999999999999999999 899999999987655444332 2333333 4599999999
Q ss_pred ccCHHHHHHHHHhhhc-------C--ceecCCCcEEec-ccEEEEEecCCC
Q 002012 776 KAHQDVFNILLQLLDD-------G--RITDSQGRTVSF-TNCVVIMTSNIG 816 (982)
Q Consensus 776 kl~~~~~~~Ll~~le~-------g--~~~d~~g~~~~~-~~~iiI~tsn~~ 816 (982)
.++.+++..+.+.+.. + .+. -.|..+.. .++-+.+|.|++
T Consensus 95 rl~~~vLS~i~~~i~~i~~al~~~~~~~~-~~g~~i~l~~~~~iFiT~np~ 144 (231)
T PF12774_consen 95 RLSEEVLSVISQQIQSIQDALRAKQKSFT-LEGQEIKLNPNCGIFITMNPG 144 (231)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHCTSSEEE-ETTCEEE--TT-EEEEEE-B-
T ss_pred hhhHHHHHHHHHHHHHHHHhhcccccccc-cCCCEEEEccceeEEEeeccc
Confidence 9999987777655432 2 122 23555555 456677788865
No 461
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.33 E-value=1.2e-05 Score=86.53 Aligned_cols=183 Identities=18% Similarity=0.281 Sum_probs=121.3
Q ss_pred CCCCCcccchHHHHHHHHHhccC--CCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEeccccccccc--
Q 002012 266 GKLDPVIGRDDEIRRCIQILSRR--TKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGTC-- 341 (982)
Q Consensus 266 ~~l~~liG~~~~i~~l~~~L~~~--~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~~-- 341 (982)
..|+-+|+.+..++.++....+- --..+|+.|++||||..+|++....-.++ ..+++.+||+++.....
T Consensus 201 ~~F~~~v~~S~~mk~~v~qA~k~AmlDAPLLI~GeTGTGKdLlAkaCH~~S~R~-------~~pFlalNCA~lPe~~aEs 273 (511)
T COG3283 201 SGFEQIVAVSPKMKHVVEQAQKLAMLDAPLLITGETGTGKDLLAKACHLASPRH-------SKPFLALNCASLPEDAAES 273 (511)
T ss_pred cchHHHhhccHHHHHHHHHHHHhhccCCCeEEecCCCchHHHHHHHHhhcCccc-------CCCeeEeecCCCchhHhHH
Confidence 35677899998888888754442 23357888999999999999988766554 77899999988764210
Q ss_pred -ccccH--HHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCC-------------CeEEEEec
Q 002012 342 -YRGDF--EKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRG-------------ELRCIGAT 405 (982)
Q Consensus 342 -~~g~~--e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g-------------~i~vI~at 405 (982)
.-|.. .+.-..+|+.+ +++ -+|+|||..+. ...+..|+.++..| +++||+||
T Consensus 274 ElFG~apg~~gk~GffE~A---ngG-TVlLDeIgEmS--------p~lQaKLLRFL~DGtFRRVGee~Ev~vdVRVIcat 341 (511)
T COG3283 274 ELFGHAPGDEGKKGFFEQA---NGG-TVLLDEIGEMS--------PRLQAKLLRFLNDGTFRRVGEDHEVHVDVRVICAT 341 (511)
T ss_pred HHhcCCCCCCCccchhhhc---cCC-eEEeehhhhcC--------HHHHHHHHHHhcCCceeecCCcceEEEEEEEEecc
Confidence 00100 11123455543 444 69999999986 67778899999765 56899998
Q ss_pred Cchh--HhhhhhcChHHHhccceEEecCCC----HHHHHHHHHHHHHHHhhhcCC---ccChHHHHHHHHH
Q 002012 406 TLNE--YRNYIEKDPALERRFQQVFCDQPS----VENTISILRGLRERYELHHGV---KISDSALVSAAVL 467 (982)
Q Consensus 406 ~~~~--~~~~~~~d~al~rRf~~i~i~~Ps----~~e~~~IL~~~~~~~~~~~~v---~i~~~~l~~~~~~ 467 (982)
..+- +-..-+.-..|--|+..+.+..|. ..++.-+.+.+..++....++ .++++.+.++..+
T Consensus 342 q~nL~~lv~~g~fReDLfyRLNVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L~~y 412 (511)
T COG3283 342 QVNLVELVQKGKFREDLFYRLNVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVLTRY 412 (511)
T ss_pred cccHHHHHhcCchHHHHHHHhheeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHc
Confidence 6653 211112234455588878888776 445555566667776665554 5677777776665
No 462
>PF13173 AAA_14: AAA domain
Probab=98.32 E-value=1.5e-06 Score=83.78 Aligned_cols=121 Identities=26% Similarity=0.371 Sum_probs=80.1
Q ss_pred eEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccccccccCCCCCccccccCCchhHHHhh---CCCeEEEE
Q 002012 695 SFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRLVGAPPGYVGYEEGGQLTEVVRR---RPYSVVLF 771 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~---~~~~Vl~l 771 (982)
.+++.||.|||||++++.+++.+. ....++.+|+.+....... ... +.+.+.+ ....+|||
T Consensus 4 ~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~~~~~~~~~~~--------------~~~-~~~~~~~~~~~~~~~i~i 67 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLLKQLAKDLL-PPENILYINFDDPRDRRLA--------------DPD-LLEYFLELIKPGKKYIFI 67 (128)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc-ccccceeeccCCHHHHHHh--------------hhh-hHHHHHHhhccCCcEEEE
Confidence 389999999999999999998875 3467888888775431100 000 1222222 24579999
Q ss_pred ccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcC
Q 002012 772 DEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFR 851 (982)
Q Consensus 772 DEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 851 (982)
|||+.++ ++...+..+.+.+ .++.||+|+...... .....
T Consensus 68 DEiq~~~-~~~~~lk~l~d~~------------~~~~ii~tgS~~~~l---------------------------~~~~~ 107 (128)
T PF13173_consen 68 DEIQYLP-DWEDALKFLVDNG------------PNIKIILTGSSSSLL---------------------------SKDIA 107 (128)
T ss_pred ehhhhhc-cHHHHHHHHHHhc------------cCceEEEEccchHHH---------------------------hhccc
Confidence 9999996 6888888888863 245677766543210 01133
Q ss_pred hHHHhccccccccCCCChhHH
Q 002012 852 PEFLNRIDEYIVFQPLDSKEI 872 (982)
Q Consensus 852 p~ll~Rid~ii~F~pl~~~~l 872 (982)
..+.+|. ..+...|++..|.
T Consensus 108 ~~l~gr~-~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 108 ESLAGRV-IEIELYPLSFREF 127 (128)
T ss_pred ccCCCeE-EEEEECCCCHHHh
Confidence 4667888 4788899987764
No 463
>PRK06526 transposase; Provisional
Probab=98.32 E-value=9.1e-07 Score=95.37 Aligned_cols=100 Identities=27% Similarity=0.347 Sum_probs=60.2
Q ss_pred CCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccccc---cccccHHHHHHHHHHHHHhcCCCeE
Q 002012 289 TKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGT---CYRGDFEKRLKAVLKEVTKSNGQII 365 (982)
Q Consensus 289 ~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~---~~~g~~e~~l~~l~~~~~~~~~~~I 365 (982)
...|++|+||||||||++|.+|+..+... +..++..++..+.... ...|. +...+..+ ...-+
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~-------g~~v~f~t~~~l~~~l~~~~~~~~----~~~~l~~l---~~~dl 162 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQA-------GHRVLFATAAQWVARLAAAHHAGR----LQAELVKL---GRYPL 162 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHC-------CCchhhhhHHHHHHHHHHHHhcCc----HHHHHHHh---ccCCE
Confidence 45689999999999999999999988653 5666666665544321 11122 22223333 23348
Q ss_pred EEEccchhhhhCCCCCchhhHHHHHHhhhcC--CCeEEEEecCch
Q 002012 366 LFIDELHTIIGAGNQSGAMDASNMLKPMLGR--GELRCIGATTLN 408 (982)
Q Consensus 366 L~IDEi~~l~~~~~~~~~~~~~~~L~~~le~--g~i~vI~at~~~ 408 (982)
|+|||++.+.. .....+.|.++++. .+-.+|.+||.+
T Consensus 163 LIIDD~g~~~~------~~~~~~~L~~li~~r~~~~s~IitSn~~ 201 (254)
T PRK06526 163 LIVDEVGYIPF------EPEAANLFFQLVSSRYERASLIVTSNKP 201 (254)
T ss_pred EEEcccccCCC------CHHHHHHHHHHHHHHHhcCCEEEEcCCC
Confidence 99999997631 13333455555531 122466666664
No 464
>KOG1808 consensus AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.32 E-value=1.4e-05 Score=103.54 Aligned_cols=133 Identities=20% Similarity=0.243 Sum_probs=92.1
Q ss_pred CCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEeccccc------c--cccccccHHHHHHHHHHHHHhc
Q 002012 289 TKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLV------A--GTCYRGDFEKRLKAVLKEVTKS 360 (982)
Q Consensus 289 ~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~------~--~~~~~g~~e~~l~~l~~~~~~~ 360 (982)
++..+||.||.|+|||+++..+|+.. +.+++.++--..+ + -+...|+...+-..++..+..
T Consensus 439 ~~~pillqG~tssGKtsii~~la~~~----------g~~~vrinnhehtd~qeyig~y~~~~~g~l~freg~LV~Alr~- 507 (1856)
T KOG1808|consen 439 GKFPILLQGPTSSGKTSIIKELARAT----------GKNIVRINNHEHTDLQEYIGTYVADDNGDLVFREGVLVQALRN- 507 (1856)
T ss_pred CCCCeEEecCcCcCchhHHHHHHHHh----------ccCceehhccccchHHHHHHhhhcCCCCCeeeehhHHHHHHHh-
Confidence 45579999999999999999999998 7777776533322 2 122345555555566665543
Q ss_pred CCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCC----------------CeEEEEecCch-hHhhhhhcChHHHhc
Q 002012 361 NGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRG----------------ELRCIGATTLN-EYRNYIEKDPALERR 423 (982)
Q Consensus 361 ~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g----------------~i~vI~at~~~-~~~~~~~~d~al~rR 423 (982)
++++|+||++... .++.+.|.++++.. +..+.++-|++ .|...-.+..+|++|
T Consensus 508 --G~~~vlD~lnla~--------~dvL~aLnrllddnRel~ipe~~rlv~~h~~f~lfatqn~~~~y~grk~lsRa~~~r 577 (1856)
T KOG1808|consen 508 --GDWIVLDELNLAP--------HDVLEALNRLLDDNRELFIPETQRLVKAHPEFMLFATQNPPGTYGGRKILSRALRNR 577 (1856)
T ss_pred --CCEEEeccccccc--------hHHHHHHHhhhhhhccccccccceeeccCcchhhhhhccCccccchhhhhhhccccc
Confidence 4589999999875 67888888888642 22333333333 255555678889999
Q ss_pred cceEEecCCCHHHHHHHHH
Q 002012 424 FQQVFCDQPSVENTISILR 442 (982)
Q Consensus 424 f~~i~i~~Ps~~e~~~IL~ 442 (982)
|..+++..-..++...|+.
T Consensus 578 f~e~~f~~~~e~e~~~i~~ 596 (1856)
T KOG1808|consen 578 FIELHFDDIGEEELEEILE 596 (1856)
T ss_pred chhhhhhhcCchhhhhhhc
Confidence 9888888877777777764
No 465
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.31 E-value=1.8e-06 Score=93.18 Aligned_cols=108 Identities=23% Similarity=0.369 Sum_probs=72.0
Q ss_pred eEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccccccccCCCCCccccccCCchhHHHhhCCCeEEEEccc
Q 002012 695 SFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEI 774 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~~~~~Vl~lDEi 774 (982)
+++|+||||||||++|-+|+..+...+..+..+..++++..-... +.. |. ....+...+...+ ||||||+
T Consensus 107 nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~--~~~-----~~-~~~~l~~~l~~~d--lLIiDDl 176 (254)
T COG1484 107 NLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAA--FDE-----GR-LEEKLLRELKKVD--LLIIDDI 176 (254)
T ss_pred cEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHH--Hhc-----Cc-hHHHHHHHhhcCC--EEEEecc
Confidence 599999999999999999999997667888888888875431110 000 00 0112344444544 9999999
Q ss_pred cc--cCHHHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCChHHHHHh
Q 002012 775 EK--AHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILET 823 (982)
Q Consensus 775 dk--l~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~i~~~ 823 (982)
-. +++...+.+++++..... +... |+|||.....+.+.
T Consensus 177 G~~~~~~~~~~~~~q~I~~r~~----------~~~~-~~tsN~~~~~~~~~ 216 (254)
T COG1484 177 GYEPFSQEEADLLFQLISRRYE----------SRSL-IITSNLSFGEWDEL 216 (254)
T ss_pred cCccCCHHHHHHHHHHHHHHHh----------hccc-eeecCCChHHHHhh
Confidence 77 555567778887764211 1233 99999887655443
No 466
>PHA00729 NTP-binding motif containing protein
Probab=98.31 E-value=2.9e-06 Score=88.53 Aligned_cols=127 Identities=13% Similarity=0.208 Sum_probs=74.1
Q ss_pred HHHHHHhccCCCCCcEEeCCCCCcHHHHHHHHHHHhhcC--CC----CCCCCCCeEEEEecccccccccccccHHHHHHH
Q 002012 279 RRCIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRG--DV----PETLQNRKLISLDMASLVAGTCYRGDFEKRLKA 352 (982)
Q Consensus 279 ~~l~~~L~~~~~~~iLL~GppGvGKT~la~~la~~l~~~--~~----p~~l~~~~v~~l~~~~l~~~~~~~g~~e~~l~~ 352 (982)
+.+++.+......|++|+|+||||||++|.+|++.+... .+ .....+...+.++..++. ..++.
T Consensus 6 k~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~~~~~~fid~~~Ll----------~~L~~ 75 (226)
T PHA00729 6 KKIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQYVQNSYFFELPDAL----------EKIQD 75 (226)
T ss_pred HHHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhcCCcEEEEEHHHHH----------HHHHH
Confidence 345555555566799999999999999999999987310 00 000112233344322221 22222
Q ss_pred HHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCCCeEEEEecCchhHhhhhhcChHHHhccceEEecCC
Q 002012 353 VLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRGELRCIGATTLNEYRNYIEKDPALERRFQQVFCDQP 432 (982)
Q Consensus 353 l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g~i~vI~at~~~~~~~~~~~d~al~rRf~~i~i~~P 432 (982)
.+. .....-+|+|||+..-.... . + .. ..+..++.+.+++++|+..+.+..+
T Consensus 76 a~~---~~~~~dlLIIDd~G~~~~~~------~---w---h~-------------~~~~~yf~L~~aLrSR~~l~il~~l 127 (226)
T PHA00729 76 AID---NDYRIPLIIFDDAGIWLSKY------V---W---YE-------------DYMKTFYKIYALIRTRVSAVIFTTP 127 (226)
T ss_pred HHh---cCCCCCEEEEeCCchhhccc------c---h---hh-------------hccchHHHHHHHHHhhCcEEEEecC
Confidence 221 11111379999987543110 0 0 00 0012345678899999999999999
Q ss_pred CHHHHHHHHHH
Q 002012 433 SVENTISILRG 443 (982)
Q Consensus 433 s~~e~~~IL~~ 443 (982)
+++++...|+.
T Consensus 128 s~edL~~~Lr~ 138 (226)
T PHA00729 128 SPEDLAFYLRE 138 (226)
T ss_pred CHHHHHHHHHh
Confidence 99998888864
No 467
>PF05729 NACHT: NACHT domain
Probab=98.29 E-value=9.2e-06 Score=81.56 Aligned_cols=144 Identities=19% Similarity=0.295 Sum_probs=85.1
Q ss_pred cEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccccccccccHHH-----------HHHHHHHHHHhcC
Q 002012 293 PVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGTCYRGDFEK-----------RLKAVLKEVTKSN 361 (982)
Q Consensus 293 iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~~~~g~~e~-----------~l~~l~~~~~~~~ 361 (982)
++|+|+||+|||++++.++..+.....+... ..-++.+.+......... ..... .....+..+....
T Consensus 3 l~I~G~~G~GKStll~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQLAEEEPPPSK-FPYPFFFSLRDISDSNNS-RSLADLLFDQLPESIAPIEELLQELLEKN 80 (166)
T ss_pred EEEECCCCCChHHHHHHHHHHHHhcCccccc-ceEEEEEeehhhhhcccc-chHHHHHHHhhccchhhhHHHHHHHHHcC
Confidence 6788999999999999999998766432211 123344444433322110 01111 1112222333446
Q ss_pred CCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcC---CCeEEEEecCchhHhhhhhcChHHHhcc---ceEEecCCCHH
Q 002012 362 GQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGR---GELRCIGATTLNEYRNYIEKDPALERRF---QQVFCDQPSVE 435 (982)
Q Consensus 362 ~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~---g~i~vI~at~~~~~~~~~~~d~al~rRf---~~i~i~~Ps~~ 435 (982)
+.++|+||.+|.+...............|..++.. .++.+|.++++..+.. +.+.+ ..+.+...+.+
T Consensus 81 ~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~-------~~~~~~~~~~~~l~~~~~~ 153 (166)
T PF05729_consen 81 KRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPD-------LRRRLKQAQILELEPFSEE 153 (166)
T ss_pred CceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHH-------HHHhcCCCcEEEECCCCHH
Confidence 78899999999987543221222344555555543 4678888887766322 44433 46788888999
Q ss_pred HHHHHHHHHH
Q 002012 436 NTISILRGLR 445 (982)
Q Consensus 436 e~~~IL~~~~ 445 (982)
++.++++...
T Consensus 154 ~~~~~~~~~f 163 (166)
T PF05729_consen 154 DIKQYLRKYF 163 (166)
T ss_pred HHHHHHHHHh
Confidence 9888887554
No 468
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=98.28 E-value=8e-06 Score=94.90 Aligned_cols=52 Identities=21% Similarity=0.374 Sum_probs=42.7
Q ss_pred cCCCCCcccchHHHHHHHHHhc------cCCCCCcEEeCCCCCcHHHHHHHHHHHhhc
Q 002012 265 SGKLDPVIGRDDEIRRCIQILS------RRTKNNPVIIGEPGVGKTAIAEGLAQRIVR 316 (982)
Q Consensus 265 ~~~l~~liG~~~~i~~l~~~L~------~~~~~~iLL~GppGvGKT~la~~la~~l~~ 316 (982)
-..|++..|.++.++++++.|. ...+.-++|+||||+|||+||+.|++.+..
T Consensus 72 y~fF~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 72 YPAFEEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred ccchhcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence 3468889999999999999882 234456778899999999999999998743
No 469
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.28 E-value=2.8e-05 Score=87.08 Aligned_cols=175 Identities=19% Similarity=0.287 Sum_probs=109.5
Q ss_pred hhHHHhhcCCCCCcccchHHHHHHHHHhc----cCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEec
Q 002012 258 DLTELARSGKLDPVIGRDDEIRRCIQILS----RRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDM 333 (982)
Q Consensus 258 ~l~~~~~~~~l~~liG~~~~i~~l~~~L~----~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~ 333 (982)
.+..-++|++ ++||+.++..+-+.+. .....++.+.|-||+|||.....+-..+.. .......+++++
T Consensus 142 ~l~~t~~p~~---l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~-----~~~~~~~v~inc 213 (529)
T KOG2227|consen 142 SLLNTAPPGT---LKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSK-----SSKSPVTVYINC 213 (529)
T ss_pred HHHhcCCCCC---ccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhh-----hcccceeEEEee
Confidence 3444445544 7999999888777543 456778899999999999999877766533 223456688888
Q ss_pred cccccccc-c-------------cccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHH--HHHhhhcCC
Q 002012 334 ASLVAGTC-Y-------------RGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASN--MLKPMLGRG 397 (982)
Q Consensus 334 ~~l~~~~~-~-------------~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~--~L~~~le~g 397 (982)
.++..... | .|.....+..+-....+.....|+++||+|.|...++ .+.- +..+-+-..
T Consensus 214 ~sl~~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~-----~vLy~lFewp~lp~s 288 (529)
T KOG2227|consen 214 TSLTEASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQ-----TVLYTLFEWPKLPNS 288 (529)
T ss_pred ccccchHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhccc-----ceeeeehhcccCCcc
Confidence 76542110 0 1111111222222233334468999999999984332 2211 123334467
Q ss_pred CeEEEEecCchhHhhhhhcChHHHhcc----ceEEecCCCHHHHHHHHHHHHHH
Q 002012 398 ELRCIGATTLNEYRNYIEKDPALERRF----QQVFCDQPSVENTISILRGLRER 447 (982)
Q Consensus 398 ~i~vI~at~~~~~~~~~~~d~al~rRf----~~i~i~~Ps~~e~~~IL~~~~~~ 447 (982)
++.+||.+|.-++...+ -|.|..|+ ..+.|++++.+|+.+||..-...
T Consensus 289 r~iLiGiANslDlTdR~--LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~ 340 (529)
T KOG2227|consen 289 RIILIGIANSLDLTDRF--LPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSE 340 (529)
T ss_pred eeeeeeehhhhhHHHHH--hhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhc
Confidence 88999999987754322 34455544 36788888999999999754443
No 470
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=98.27 E-value=6.2e-06 Score=85.66 Aligned_cols=133 Identities=14% Similarity=0.178 Sum_probs=91.3
Q ss_pred eEEeecCCC-CchHHHHHHHHHHhcCCCCceEEEeccccccccccccccCCC------CCccccccCCchhHHHhhC---
Q 002012 695 SFMFMGPTG-VGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRLVGAP------PGYVGYEEGGQLTEVVRRR--- 764 (982)
Q Consensus 695 ~lLf~Gp~G-tGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l~g~~------~g~vg~~~~~~l~~~l~~~--- 764 (982)
.+||.|..+ +||..++..+++.+++.+ ++.....+-+ ++... ...++.++.+.+.+.+...
T Consensus 17 AYLfeG~n~~~~~~~~~~f~~~~l~~~~-----i~~~~HPD~~----~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~ 87 (263)
T PRK06581 17 SWLIEAENIEQALKDLEKFIYIKLFKNS-----IPLENNPDYH----FIARETSATSNAKNISIEQIRKLQDFLSKTSAI 87 (263)
T ss_pred eeeEeCCChhhHHHHHHHHHHHHHhccC-----cccCCCCCEE----EEeccccccccCCcccHHHHHHHHHHHhhCccc
Confidence 499999998 999999999999986542 2222221111 11111 1234444445555555543
Q ss_pred -CCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHH
Q 002012 765 -PYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVV 843 (982)
Q Consensus 765 -~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 843 (982)
++.|++|+++|+|+..+.|+||+.||+- ..+++||++|+....
T Consensus 88 g~~KViII~~ae~mt~~AANALLKtLEEP-----------P~~t~fILit~~~~~------------------------- 131 (263)
T PRK06581 88 SGYKVAIIYSAELMNLNAANSCLKILEDA-----------PKNSYIFLITSRAAS------------------------- 131 (263)
T ss_pred CCcEEEEEechHHhCHHHHHHHHHhhcCC-----------CCCeEEEEEeCChhh-------------------------
Confidence 4579999999999999999999999982 257888887765432
Q ss_pred HHHHhhcChHHHhccccccccCCCChhHHHHHHHHH
Q 002012 844 ELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQ 879 (982)
Q Consensus 844 ~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~ 879 (982)
+.|.+++|| ..+.|.++......+.....
T Consensus 132 ------LLpTIrSRC-q~i~~~~p~~~~~~e~~~~~ 160 (263)
T PRK06581 132 ------IISTIRSRC-FKINVRSSILHAYNELYSQF 160 (263)
T ss_pred ------CchhHhhce-EEEeCCCCCHHHHHHHHHHh
Confidence 678899999 68888888776655555443
No 471
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.27 E-value=2.1e-05 Score=94.11 Aligned_cols=184 Identities=16% Similarity=0.110 Sum_probs=121.9
Q ss_pred CCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecc----cccccccccccHHHHHHHH---H--HHHHh
Q 002012 289 TKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMA----SLVAGTCYRGDFEKRLKAV---L--KEVTK 359 (982)
Q Consensus 289 ~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~----~l~~~~~~~g~~e~~l~~l---~--~~~~~ 359 (982)
.-.+++|.|++|+|||+++++++..+.. ..+++.+..+ .+++| ++++..++.- + ..+..
T Consensus 24 ~~gGv~i~g~~G~~ks~~~r~l~~llp~--------~~p~r~~p~~~t~~~L~Gg----~Dl~~~l~~g~~~~~pGlla~ 91 (584)
T PRK13406 24 GLGGVVLRARAGPVRDRWLAALRALLPA--------GTPLRRLPPGIADDRLLGG----LDLAATLRAGRPVAQRGLLAE 91 (584)
T ss_pred ccceEEEEcCCCcHHHHHHHHHHHhcCC--------CCCcccCCCCCcHHHccCC----chHHhHhhcCCcCCCCCceee
Confidence 4468999999999999999999988732 2455544332 22222 2233322110 0 11222
Q ss_pred cCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCCC---------------eEEEEecCchhHhhhhhcChHHHhcc
Q 002012 360 SNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRGE---------------LRCIGATTLNEYRNYIEKDPALERRF 424 (982)
Q Consensus 360 ~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g~---------------i~vI~at~~~~~~~~~~~d~al~rRf 424 (982)
.++ .||||||+..+. ..+++.|++.|+.|. +.+|++.+..+|. ..+.+++..||
T Consensus 92 Ah~-GvL~lDe~n~~~--------~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~--~~L~~~lLDRf 160 (584)
T PRK13406 92 ADG-GVLVLAMAERLE--------PGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEED--ERAPAALADRL 160 (584)
T ss_pred ccC-CEEEecCcccCC--------HHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcc--cCCCHHhHhhe
Confidence 233 499999999986 678899999998774 4667775555554 46899999999
Q ss_pred c-eEEecCCCHHHHH-------HHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCCcchhhHHHHHHHHHhhhhc
Q 002012 425 Q-QVFCDQPSVENTI-------SILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLPDKAIDLVDEAAAKLKMEI 496 (982)
Q Consensus 425 ~-~i~i~~Ps~~e~~-------~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~p~~a~~lld~a~~~~~~~~ 496 (982)
. .|.+..|+..+.. .|. ...+++ .++.++++.+.+++.++..+- -..++..+.++.-|.+.+.++.
T Consensus 161 ~l~v~v~~~~~~~~~~~~~~~~~I~-~AR~rl---~~v~v~~~~l~~i~~~~~~~g--v~S~Ra~i~llraARa~AaL~G 234 (584)
T PRK13406 161 AFHLDLDGLALRDAREIPIDADDIA-AARARL---PAVGPPPEAIAALCAAAAALG--IASLRAPLLALRAARAAAALAG 234 (584)
T ss_pred EEEEEcCCCChHHhcccCCCHHHHH-HHHHHH---ccCCCCHHHHHHHHHHHHHhC--CCCcCHHHHHHHHHHHHHHHcC
Confidence 7 8888888755432 222 222333 378899999999888876542 1256777888888888888776
Q ss_pred cCCcc
Q 002012 497 TSKPI 501 (982)
Q Consensus 497 ~~~~~ 501 (982)
.....
T Consensus 235 r~~V~ 239 (584)
T PRK13406 235 RTAVE 239 (584)
T ss_pred CCCCC
Confidence 64333
No 472
>PRK09183 transposase/IS protein; Provisional
Probab=98.26 E-value=1.2e-06 Score=94.93 Aligned_cols=106 Identities=22% Similarity=0.299 Sum_probs=67.5
Q ss_pred eEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccccccccCCCCCccccccCCchhHHHh--hCCCeEEEEc
Q 002012 695 SFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRLVGAPPGYVGYEEGGQLTEVVR--RRPYSVVLFD 772 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~l~--~~~~~Vl~lD 772 (982)
+++|+||||||||++|.+|+..+...+..+..+++.++........ .. +.+...+. .....+++||
T Consensus 104 ~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~-----------~~-~~~~~~~~~~~~~~dlLiiD 171 (259)
T PRK09183 104 NIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQ-----------RQ-GRYKTTLQRGVMAPRLLIID 171 (259)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHH-----------HC-CcHHHHHHHHhcCCCEEEEc
Confidence 5999999999999999999987655555666666665532110000 00 11222222 1334699999
Q ss_pred cccc--cCHHHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCChHHHHHh
Q 002012 773 EIEK--AHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILET 823 (982)
Q Consensus 773 Eidk--l~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~i~~~ 823 (982)
|++. ++....+.|+++++... .+.-+|+|||.+...+.+.
T Consensus 172 dlg~~~~~~~~~~~lf~li~~r~-----------~~~s~iiTsn~~~~~w~~~ 213 (259)
T PRK09183 172 EIGYLPFSQEEANLFFQVIAKRY-----------EKGSMILTSNLPFGQWDQT 213 (259)
T ss_pred ccccCCCChHHHHHHHHHHHHHH-----------hcCcEEEecCCCHHHHHHH
Confidence 9986 45566778999887411 1123788999987766544
No 473
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.26 E-value=1.1e-05 Score=85.90 Aligned_cols=125 Identities=12% Similarity=0.049 Sum_probs=84.8
Q ss_pred CCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCC------------CCCCCeEEEEecccccccccccccHHHHHHHHHHH
Q 002012 289 TKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPE------------TLQNRKLISLDMASLVAGTCYRGDFEKRLKAVLKE 356 (982)
Q Consensus 289 ~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~------------~l~~~~v~~l~~~~l~~~~~~~g~~e~~l~~l~~~ 356 (982)
.+...||+||+|+||..+|.++|+.+.+..-.. ......++.+.... ..-..+.++++.+.
T Consensus 6 ~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~-------~~I~id~ir~l~~~ 78 (261)
T PRK05818 6 KTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQK-------NPIKKEDALSIINK 78 (261)
T ss_pred CCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCc-------ccCCHHHHHHHHHH
Confidence 344578899999999999999999987653111 01112222221110 01112334445444
Q ss_pred HHh----cCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhc--CCCeEEEEecCchhHhhhhhcChHHHhccceEEec
Q 002012 357 VTK----SNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLG--RGELRCIGATTLNEYRNYIEKDPALERRFQQVFCD 430 (982)
Q Consensus 357 ~~~----~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le--~g~i~vI~at~~~~~~~~~~~d~al~rRf~~i~i~ 430 (982)
+.. .++.-|++||+++.|. ..+.|.|+..+| ..++.+|..|+..+ .+-|.++|||+.+.++
T Consensus 79 l~~~s~e~~~~KV~II~~ae~m~--------~~AaNaLLK~LEEPp~~t~fiLit~~~~-----~lLpTI~SRCq~~~~~ 145 (261)
T PRK05818 79 LNRPSVESNGKKIYIIYGIEKLN--------KQSANSLLKLIEEPPKNTYGIFTTRNEN-----NILNTILSRCVQYVVL 145 (261)
T ss_pred HccCchhcCCCEEEEeccHhhhC--------HHHHHHHHHhhcCCCCCeEEEEEECChH-----hCchHhhhheeeeecC
Confidence 332 1345699999999997 678899999998 45788888888887 7999999999988887
Q ss_pred CCC
Q 002012 431 QPS 433 (982)
Q Consensus 431 ~Ps 433 (982)
.+.
T Consensus 146 ~~~ 148 (261)
T PRK05818 146 SKE 148 (261)
T ss_pred Chh
Confidence 763
No 474
>PRK06921 hypothetical protein; Provisional
Probab=98.24 E-value=3.1e-06 Score=92.05 Aligned_cols=122 Identities=23% Similarity=0.342 Sum_probs=67.5
Q ss_pred CCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccccccccccHHHHHHHHHHHHHhcCCCeEEEE
Q 002012 289 TKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFI 368 (982)
Q Consensus 289 ~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~I 368 (982)
...+++|+||||+|||+|+.++++.+.... +..++++...++.... ...+ ......+..+... -+|+|
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~------g~~v~y~~~~~l~~~l--~~~~-~~~~~~~~~~~~~---dlLiI 183 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKK------GVPVLYFPFVEGFGDL--KDDF-DLLEAKLNRMKKV---EVLFI 183 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhc------CceEEEEEHHHHHHHH--HHHH-HHHHHHHHHhcCC---CEEEE
Confidence 457899999999999999999999985421 5677777765544221 1111 1122333333322 39999
Q ss_pred ccchh-hhhCCCC-Cc-hhhHHHHHHhhhcCCCeEEEEecCchhHhhhhhcChHHHhcc
Q 002012 369 DELHT-IIGAGNQ-SG-AMDASNMLKPMLGRGELRCIGATTLNEYRNYIEKDPALERRF 424 (982)
Q Consensus 369 DEi~~-l~~~~~~-~~-~~~~~~~L~~~le~g~i~vI~at~~~~~~~~~~~d~al~rRf 424 (982)
||++. +.+.... .. ...+.+++....+++. .+|.|||... ..+..+++.+.+|+
T Consensus 184 DDl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k-~tIitsn~~~-~el~~~~~~l~sRi 240 (266)
T PRK06921 184 DDLFKPVNGKPRATEWQIEQMYSVLNYRYLNHK-PILISSELTI-DELLDIDEALGSRI 240 (266)
T ss_pred eccccccCCCccCCHHHHHHHHHHHHHHHHCCC-CEEEECCCCH-HHHhhhhhHHHHHH
Confidence 99954 2221111 11 1123333433333433 3566776543 22333467777774
No 475
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=98.24 E-value=7.4e-06 Score=91.69 Aligned_cols=189 Identities=19% Similarity=0.239 Sum_probs=111.4
Q ss_pred HHHHHhhhcccccchHHHHHHHHHHHH-HhcCCCC--CCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccc
Q 002012 655 VMLEEVLHKRVIGQDIAVKSVADAIRR-SRAGLSD--PARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSE 731 (982)
Q Consensus 655 ~~l~~~l~~~iiGq~~a~~~l~~~i~~-~~~g~~~--~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~ 731 (982)
+.+.+.+...|+|..++++++.-.+-- .+.-+++ ..+.-.|+||.|.|||.|+-+.+-+-+.. |+.....+.
T Consensus 323 e~is~sIAPSIfG~~DiKkAiaClLFgGsrK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvs-----PIaVYTSGK 397 (729)
T KOG0481|consen 323 ERISKSIAPSIFGHEDIKKAIACLLFGGSRKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVS-----PIAVYTSGK 397 (729)
T ss_pred HHHhhccCchhcCchhHHHHHHHHhhcCccccCCCcceeccceeEEEecCCchhHHHHHHHHHhcC-----ceEEEecCC
Confidence 345566678899999998888665521 1111111 12334579999999999999999887654 111111000
Q ss_pred -cccccccccccCCCCCccccccCCchhHHHhhCCCeEEEEccccccCHHHHHHHHHhhhcCceecCC-CcEEe-cccEE
Q 002012 732 -YMEKHSVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQ-GRTVS-FTNCV 808 (982)
Q Consensus 732 -~~~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~-g~~~~-~~~~i 808 (982)
-....-....+-.+.+..-|-+++ ++-.+.++|+.|||+|||.++-.-++-.+||...+.... |-+.. .++|-
T Consensus 398 GSSAAGLTASV~RD~~tReFylEGG----AMVLADgGVvCIDEFDKMre~DRVAIHEAMEQQTISIAKAGITT~LNSRtS 473 (729)
T KOG0481|consen 398 GSSAAGLTASVIRDPSTREFYLEGG----AMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRTS 473 (729)
T ss_pred CcccccceeeEEecCCcceEEEecc----eEEEecCCEEEeehhhccCchhhhHHHHHHHhhhHHHhhhcceeeecchhh
Confidence 000000011111222211122333 344567789999999999999999999999987776654 44333 37778
Q ss_pred EEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChh
Q 002012 809 VIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSK 870 (982)
Q Consensus 809 iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~ 870 (982)
++++.|+.....-+. ...++. -.|-|.+++|||.++....--.+
T Consensus 474 VLAAANpvfGRyDd~-Kt~~dN-----------------IDf~~TILSRFDmIFIVKD~h~~ 517 (729)
T KOG0481|consen 474 VLAAANPVFGRYDDT-KTGEDN-----------------IDFMPTILSRFDMIFIVKDEHDE 517 (729)
T ss_pred hhhhcCCcccccccc-CCcccc-----------------cchhhhHhhhccEEEEEeccCcc
Confidence 888888643322111 001110 12789999999988776655443
No 476
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=98.23 E-value=7.3e-06 Score=91.67 Aligned_cols=253 Identities=14% Similarity=0.175 Sum_probs=137.3
Q ss_pred HHHHHHhhhcccccchHHHHHHHHHHHHH-----hcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEe
Q 002012 654 LVMLEEVLHKRVIGQDIAVKSVADAIRRS-----RAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRID 728 (982)
Q Consensus 654 l~~l~~~l~~~iiGq~~a~~~l~~~i~~~-----~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~ 728 (982)
...|...+..+|+|+.++++.|.-.+.-. ..|+. -+...|+++.|.||+.|+-+.+.+.+....+ .+.+-.
T Consensus 333 yekLa~SiAPEIyGheDVKKaLLLlLVGgvd~~~~dGMK--IRGdINicLmGDPGVAKSQLLkyi~rlapRg--vYTTGr 408 (721)
T KOG0482|consen 333 YEKLAASIAPEIYGHEDVKKALLLLLVGGVDKSPGDGMK--IRGDINICLMGDPGVAKSQLLKYISRLAPRG--VYTTGR 408 (721)
T ss_pred HHHHHHhhchhhccchHHHHHHHHHhhCCCCCCCCCCce--eecceeEEecCCCchhHHHHHHHHHhcCccc--ceecCC
Confidence 45566778889999999999887666311 01111 1233579999999999999999999876221 011101
Q ss_pred ccc-cccccccccccCCCCCccc--cccCCchhHHHhhCCCeEEEEccccccCHHHHHHHHHhhhcCceecCC-CcEEec
Q 002012 729 MSE-YMEKHSVSRLVGAPPGYVG--YEEGGQLTEVVRRRPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQ-GRTVSF 804 (982)
Q Consensus 729 ~s~-~~~~~~~~~l~g~~~g~vg--~~~~~~l~~~l~~~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~-g~~~~~ 804 (982)
+|. +.-...+ .-.| -.| .-++ +++--+.++|-.|||+|||...-..++-.+||...+..+. |-...+
T Consensus 409 GSSGVGLTAAV---mkDp--vTgEM~LEG----GALVLAD~GICCIDEfDKM~e~DRtAIHEVMEQQTISIaKAGI~TtL 479 (721)
T KOG0482|consen 409 GSSGVGLTAAV---MKDP--VTGEMVLEG----GALVLADGGICCIDEFDKMDESDRTAIHEVMEQQTISIAKAGINTTL 479 (721)
T ss_pred CCCccccchhh---hcCC--CCCeeEecc----ceEEEccCceEeehhhhhhhhhhhHHHHHHHHhhhhhhhhhccccch
Confidence 110 0000000 0000 000 0011 2344566789999999999999999999999987776654 433322
Q ss_pred -ccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccC-CCChhHHHHHHHHH---
Q 002012 805 -TNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQ-PLDSKEISKIVEIQ--- 879 (982)
Q Consensus 805 -~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~-pl~~~~l~~il~~~--- 879 (982)
.+|-|+++.|+...... ...+ ... .-.++++|++|||..+... -++++.=..+.++.
T Consensus 480 NAR~sILaAANPayGRYn-------prrs-----~e~------NI~LPaALLSRFDll~Li~D~pdrd~D~~LA~HiTyV 541 (721)
T KOG0482|consen 480 NARTSILAAANPAYGRYN-------PRRS-----PEQ------NINLPAALLSRFDLLWLIQDRPDRDNDLRLAQHITYV 541 (721)
T ss_pred hhhHHhhhhcCccccccC-------cccC-----hhH------hcCCcHHHHHhhhhhhhhccCCcccchHHHHHHhHhh
Confidence 55667777776432111 0000 000 1237889999998643222 22222111111111
Q ss_pred ------------------HHHHHHHHHhCCCCccCCHHHHHHHHhc-------CCCC---CC-CchHHHHHHHHHHHHHH
Q 002012 880 ------------------MNRVKDRLKQKKIDLHYTKEAVTLLGIL-------GFDP---NF-GARPVKRVIQQLVENEI 930 (982)
Q Consensus 880 ------------------l~~~~~~~~~~~~~l~i~~~a~~~L~~~-------~~~~---~~-gaR~L~~~i~~~l~~~l 930 (982)
++.+-..++ ..+..+++++.+++... .|.+ .| .+|-|-.+++ +..++
T Consensus 542 H~H~~qp~~~fepl~~~~mR~yI~~ak--~~~P~vp~~l~dyi~~AYv~~Rrea~~~~~~t~ttpRtLL~IlR--ls~Al 617 (721)
T KOG0482|consen 542 HQHEEQPPLDFEPLDPNLMRRYISLAK--RKNPVVPEALADYITGAYVELRREARSSKDFTYTTPRTLLGILR--LSTAL 617 (721)
T ss_pred hccCCCCCccCCCCCHHHHHHHHHHHh--hcCCCCCHHHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHH--HHHHH
Confidence 111111122 23466777777777541 2322 23 4777776665 56677
Q ss_pred HHHHHcCCCCC
Q 002012 931 AVAILKGDIKE 941 (982)
Q Consensus 931 a~~~l~~~~~~ 941 (982)
|+.-+......
T Consensus 618 arLRls~~V~~ 628 (721)
T KOG0482|consen 618 ARLRLSDSVEE 628 (721)
T ss_pred HHhhhccccch
Confidence 77666654433
No 477
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=98.20 E-value=3.2e-06 Score=98.33 Aligned_cols=174 Identities=22% Similarity=0.333 Sum_probs=116.1
Q ss_pred ccchHHHHHHHHHhcc--CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEeccccccc---cc---c-
Q 002012 272 IGRDDEIRRCIQILSR--RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAG---TC---Y- 342 (982)
Q Consensus 272 iG~~~~i~~l~~~L~~--~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~---~~---~- 342 (982)
++.+..++.++..+.+ ...-.+++.|+|||||-.+++++.+.-. ...+++.+||..+... .. |
T Consensus 316 ~~~d~s~a~l~rk~~rv~~~~~pvll~GEtGtGKe~laraiH~~s~--------~~gpfvAvNCaAip~~liesELFGy~ 387 (606)
T COG3284 316 PLLDPSRATLLRKAERVAATDLPVLLQGETGTGKEVLARAIHQNSE--------AAGPFVAVNCAAIPEALIESELFGYV 387 (606)
T ss_pred cccCHHHHHHHHHHHHHhhcCCCeEecCCcchhHHHHHHHHHhccc--------ccCCeEEEEeccchHHhhhHHHhccC
Confidence 4677777777776655 3455789999999999999999998652 3678899998776531 00 1
Q ss_pred cccHH----HHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCC------------CeEEEEecC
Q 002012 343 RGDFE----KRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRG------------ELRCIGATT 406 (982)
Q Consensus 343 ~g~~e----~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g------------~i~vI~at~ 406 (982)
.|.+. +-.+..++ ..++ ..||+|||..|. .+++..|+.+++.| +|+||+||+
T Consensus 388 ~GafTga~~kG~~g~~~---~A~g-GtlFldeIgd~p--------~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath 455 (606)
T COG3284 388 AGAFTGARRKGYKGKLE---QADG-GTLFLDEIGDMP--------LALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATH 455 (606)
T ss_pred ccccccchhccccccce---ecCC-CccHHHHhhhch--------HHHHHHHHHHHhhCceeccCCcceeEEEEEEeccC
Confidence 12222 22222332 2233 379999999986 67888899999866 458888888
Q ss_pred chhHhhhhh---cChHHHhccceEEecCCCH---HHHHHHHHHHHHHHhhhcCCccChHHHHHHHHH
Q 002012 407 LNEYRNYIE---KDPALERRFQQVFCDQPSV---ENTISILRGLRERYELHHGVKISDSALVSAAVL 467 (982)
Q Consensus 407 ~~~~~~~~~---~d~al~rRf~~i~i~~Ps~---~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~ 467 (982)
.+- ..... .-..|.-|+....|..|+. .+....|..+..++.. ....++++++..+..+
T Consensus 456 ~dl-~~lv~~g~fredLyyrL~~~~i~lP~lr~R~d~~~~l~~~~~~~~~-~~~~l~~~~~~~l~~~ 520 (606)
T COG3284 456 RDL-AQLVEQGRFREDLYYRLNAFVITLPPLRERSDRIPLLDRILKREND-WRLQLDDDALARLLAY 520 (606)
T ss_pred cCH-HHHHHcCCchHHHHHHhcCeeeccCchhcccccHHHHHHHHHHccC-CCccCCHHHHHHHHhC
Confidence 763 22221 2234444887777777764 4455666666666544 5678999999888766
No 478
>PRK06921 hypothetical protein; Provisional
Probab=98.20 E-value=1.7e-06 Score=94.08 Aligned_cols=105 Identities=17% Similarity=0.229 Sum_probs=65.3
Q ss_pred ceEEeecCCCCchHHHHHHHHHHhcCC-CCceEEEeccccccccccccccCCCCCccccccCCchhHHHhhCCCeEEEEc
Q 002012 694 ASFMFMGPTGVGKTELGKALADFLFNT-ENALVRIDMSEYMEKHSVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFD 772 (982)
Q Consensus 694 ~~lLf~Gp~GtGKT~lA~~la~~l~~~-~~~~v~i~~s~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~~~~~Vl~lD 772 (982)
.+++|+||||+|||+++.+|++.+... +..++.+...++... +... + .......+.+..+ .||+||
T Consensus 118 ~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~--l~~~------~---~~~~~~~~~~~~~--dlLiID 184 (266)
T PRK06921 118 NSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGD--LKDD------F---DLLEAKLNRMKKV--EVLFID 184 (266)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHH--HHHH------H---HHHHHHHHHhcCC--CEEEEe
Confidence 359999999999999999999998654 566677766554221 0000 0 0001122333344 499999
Q ss_pred cccc-------cCHHHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCChHHHH
Q 002012 773 EIEK-------AHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYIL 821 (982)
Q Consensus 773 Eidk-------l~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~i~ 821 (982)
|++. +....++.|+.+++... . .+.-+|+|||.....+.
T Consensus 185 Dl~~~~~g~e~~t~~~~~~lf~iin~R~-~---------~~k~tIitsn~~~~el~ 230 (266)
T PRK06921 185 DLFKPVNGKPRATEWQIEQMYSVLNYRY-L---------NHKPILISSELTIDELL 230 (266)
T ss_pred ccccccCCCccCCHHHHHHHHHHHHHHH-H---------CCCCEEEECCCCHHHHh
Confidence 9944 44555677888886421 1 11236889998776543
No 479
>KOG3595 consensus Dyneins, heavy chain [Cytoskeleton]
Probab=98.19 E-value=0.00011 Score=97.06 Aligned_cols=142 Identities=18% Similarity=0.317 Sum_probs=97.7
Q ss_pred CCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccccccccccHHHHHHHHHHHHHhc------CCCe
Q 002012 291 NNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGTCYRGDFEKRLKAVLKEVTKS------NGQI 364 (982)
Q Consensus 291 ~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~~~~g~~e~~l~~l~~~~~~~------~~~~ 364 (982)
..++++||+|+|||.++......... ..++-++.+...++.. +...+...++..... ....
T Consensus 128 k~~~~~g~~g~gk~~~~~~~~~~~~~---------~~~~~~~fs~~ts~~~----~q~~~~~~~~k~~~~~~~~~~~~~~ 194 (1395)
T KOG3595|consen 128 KPVLLVGPTGTGKTVLVLSELRSLQD---------REVYLLNFSSVTSSEL----LQEIIESKLDKRRSGNYGPPLGKKL 194 (1395)
T ss_pred CeEEEEcCCCCCeeeehHHHHHhccc---------chheEEeeeeeccHHH----HHHHHHHHHHHhcccCCCCCCCcee
Confidence 78999999999999999887766522 2222255444443321 011111111111111 2236
Q ss_pred EEEEccchhhhhCCCCCchhhHHHHHHhhhcCC--------------CeEEEEecCchhHhhhhhcChHHHhccceEEec
Q 002012 365 ILFIDELHTIIGAGNQSGAMDASNMLKPMLGRG--------------ELRCIGATTLNEYRNYIEKDPALERRFQQVFCD 430 (982)
Q Consensus 365 IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g--------------~i~vI~at~~~~~~~~~~~d~al~rRf~~i~i~ 430 (982)
++|+||++.-. -...|.++...++.++++.+ ++.+++++++ +......+.+.|.|.|..+.+.
T Consensus 195 ~~f~ddinmp~--~~~yg~q~~~~~lrq~~e~~g~~~~~~~~~~~i~~i~~~~a~~~-~~~gr~~i~~r~~r~f~~~~~~ 271 (1395)
T KOG3595|consen 195 VLFVDDINMPA--LDKYGDQPPIELLRQMLEHGGFYDRKKSEWVEIENVQLVGAMNP-PGGGRNDITERFLRHFLIVSLN 271 (1395)
T ss_pred EEEEeccCCch--hhhcCCccHHHHHHHHHHhceeecccccceeEEeeeEEEeecCC-CCCccCcccHHHHHHeeeEeeC
Confidence 99999999743 33456688888999999733 5688999998 5566778999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 002012 431 QPSVENTISILRGLRERY 448 (982)
Q Consensus 431 ~Ps~~e~~~IL~~~~~~~ 448 (982)
.|+.+.+-.|...+...+
T Consensus 272 ~~~~~sl~~if~~~~~~~ 289 (1395)
T KOG3595|consen 272 YPSQESLTQIFNTILTGH 289 (1395)
T ss_pred CCChhhHHHHHHHHHhcc
Confidence 999999999988877763
No 480
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.19 E-value=2.8e-06 Score=87.18 Aligned_cols=47 Identities=32% Similarity=0.605 Sum_probs=33.5
Q ss_pred cccchHHHHHHHHHhc---cCCCCCcEEeCCCCCcHHHHHHHHHHHhhcC
Q 002012 271 VIGRDDEIRRCIQILS---RRTKNNPVIIGEPGVGKTAIAEGLAQRIVRG 317 (982)
Q Consensus 271 liG~~~~i~~l~~~L~---~~~~~~iLL~GppGvGKT~la~~la~~l~~~ 317 (982)
++||+++++++...+. ...+++++|+|++|+|||++++.+...+...
T Consensus 2 fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp -TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 6899999999999983 2456778999999999999999999887553
No 481
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.19 E-value=3.5e-05 Score=87.79 Aligned_cols=203 Identities=14% Similarity=0.159 Sum_probs=110.4
Q ss_pred hhhhHHHhhcCCCCCcccchH---HHHHHHHHh---ccCCCCC-cEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeE
Q 002012 256 GNDLTELARSGKLDPVIGRDD---EIRRCIQIL---SRRTKNN-PVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKL 328 (982)
Q Consensus 256 ~~~l~~~~~~~~l~~liG~~~---~i~~l~~~L---~~~~~~~-iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v 328 (982)
...|.++++|.+++++--... +|+.++..+ ...-+.+ +||+||+||||||.++.|+.++ +..+
T Consensus 69 ~elW~eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel----------g~~~ 138 (634)
T KOG1970|consen 69 FELWVEKYKPRTLEELAVHKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL----------GYQL 138 (634)
T ss_pred cchhHHhcCcccHHHHhhhHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh----------Ccee
Confidence 356899999999988755555 555555421 1222333 4567999999999999999998 6666
Q ss_pred EEEe-------cccccccccccc----cHHHHHHHHHHHH------Hh-----cCCCeEEEEccchhhhhCCCCCchhhH
Q 002012 329 ISLD-------MASLVAGTCYRG----DFEKRLKAVLKEV------TK-----SNGQIILFIDELHTIIGAGNQSGAMDA 386 (982)
Q Consensus 329 ~~l~-------~~~l~~~~~~~g----~~e~~l~~l~~~~------~~-----~~~~~IL~IDEi~~l~~~~~~~~~~~~ 386 (982)
.+-. ...+...+...+ ..-..++..+... .. ...+.+|||||+-..+... .....
T Consensus 139 ~Ew~Npi~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d---~~~~f 215 (634)
T KOG1970|consen 139 IEWSNPINLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRD---DSETF 215 (634)
T ss_pred eeecCCccccccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhhh---hHHHH
Confidence 6543 111111111111 1111111122222 11 1234589999997765321 12345
Q ss_pred HHHHHhhhcCCCeEEEE-ec------CchhHhhhhhcChHHHhccceEEecCCCHHHHHHHHHHHHHHHhhh-cCCccC-
Q 002012 387 SNMLKPMLGRGELRCIG-AT------TLNEYRNYIEKDPALERRFQQVFCDQPSVENTISILRGLRERYELH-HGVKIS- 457 (982)
Q Consensus 387 ~~~L~~~le~g~i~vI~-at------~~~~~~~~~~~d~al~rRf~~i~i~~Ps~~e~~~IL~~~~~~~~~~-~~v~i~- 457 (982)
.+.|..+...|.+.+|+ .| +...|+.+. .|-...-|...|.|.+-.+.-..+.|..++...... .+..++
T Consensus 216 ~evL~~y~s~g~~PlIf~iTd~~~~g~nnq~rlf~-~d~q~~~ri~~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~ 294 (634)
T KOG1970|consen 216 REVLRLYVSIGRCPLIFIITDSLSNGNNNQDRLFP-KDIQEEPRISNISFNPIAPTIMKKFLKRICRIEANKKSGIKVPD 294 (634)
T ss_pred HHHHHHHHhcCCCcEEEEEeccccCCCcchhhhch-hhhhhccCcceEeecCCcHHHHHHHHHHHHHHhcccccCCcCch
Confidence 56666666666553333 22 333444332 233344477788888878777777777777664321 112333
Q ss_pred hHHHHHHHHHhhhhh
Q 002012 458 DSALVSAAVLADRYI 472 (982)
Q Consensus 458 ~~~l~~~~~~s~r~i 472 (982)
...++.++.-+.+.|
T Consensus 295 ~~~v~~i~~~s~GDI 309 (634)
T KOG1970|consen 295 TAEVELICQGSGGDI 309 (634)
T ss_pred hHHHHHHHHhcCccH
Confidence 333455555555443
No 482
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=98.18 E-value=8.5e-05 Score=91.87 Aligned_cols=140 Identities=18% Similarity=0.275 Sum_probs=91.9
Q ss_pred CCCCcEEeCCCCCcHHHHHH-HHHHHhhcCCCCCCCCCCeEEEEecccccccccccccHHHHHHHHHHHHH---hc----
Q 002012 289 TKNNPVIIGEPGVGKTAIAE-GLAQRIVRGDVPETLQNRKLISLDMASLVAGTCYRGDFEKRLKAVLKEVT---KS---- 360 (982)
Q Consensus 289 ~~~~iLL~GppGvGKT~la~-~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~~~~g~~e~~l~~l~~~~~---~~---- 360 (982)
+.++++++||||+|||++.. .|-.+. ...++.+|.+.-... +..+.-+=.+.. ..
T Consensus 1493 t~R~~i~cGppGSgK~mlM~~sLrs~~----------~~ev~~~Nfs~~t~T-------~s~ls~Ler~t~yy~~tg~~~ 1555 (3164)
T COG5245 1493 TLRSYIYCGPPGSGKEMLMCPSLRSEL----------ITEVKYFNFSTCTMT-------PSKLSVLERETEYYPNTGVVR 1555 (3164)
T ss_pred ccceEEEECCCCCccchhcchhhhhhh----------heeeeEEeeccccCC-------HHHHHHHHhhceeeccCCeEE
Confidence 56789999999999999754 333333 567777775432211 112211111110 00
Q ss_pred ------CCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCC--------------CeEEEEecCchhHhhhhhcChHH
Q 002012 361 ------NGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRG--------------ELRCIGATTLNEYRNYIEKDPAL 420 (982)
Q Consensus 361 ------~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g--------------~i~vI~at~~~~~~~~~~~d~al 420 (982)
-...|||.|||+ .+.+..-+.+++.-+|++++++. ++.+.|++|+..-.........|
T Consensus 1556 l~PK~~vK~lVLFcDeIn--Lp~~~~y~~~~vI~FlR~l~e~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~~~eRf 1633 (3164)
T COG5245 1556 LYPKPVVKDLVLFCDEIN--LPYGFEYYPPTVIVFLRPLVERQGFWSSIAVSWVTICGIILYGACNPGTDEGRVKYYERF 1633 (3164)
T ss_pred EccCcchhheEEEeeccC--CccccccCCCceEEeeHHHHHhcccccchhhhHhhhcceEEEccCCCCCCcccCccHHHH
Confidence 112599999999 34444455667767788888752 67899999998755555667778
Q ss_pred HhccceEEecCCCHHHHHHHHHHHHHH
Q 002012 421 ERRFQQVFCDQPSVENTISILRGLRER 447 (982)
Q Consensus 421 ~rRf~~i~i~~Ps~~e~~~IL~~~~~~ 447 (982)
.||=..|++..|....+..|...+...
T Consensus 1634 ~r~~v~vf~~ype~~SL~~Iyea~l~~ 1660 (3164)
T COG5245 1634 IRKPVFVFCCYPELASLRNIYEAVLMG 1660 (3164)
T ss_pred hcCceEEEecCcchhhHHHHHHHHHHH
Confidence 787678899999988888887765554
No 483
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.16 E-value=2.3e-05 Score=82.45 Aligned_cols=112 Identities=23% Similarity=0.207 Sum_probs=79.9
Q ss_pred CeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCC-CeEEEEecCch-------hHhhhhhcChHHHhccceEEecCCCH
Q 002012 363 QIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRG-ELRCIGATTLN-------EYRNYIEKDPALERRFQQVFCDQPSV 434 (982)
Q Consensus 363 ~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g-~i~vI~at~~~-------~~~~~~~~d~al~rRf~~i~i~~Ps~ 434 (982)
|.||||||+|+|- -+...+|..+++.. -..+|.+||.- .|..-..++-.|..|+-.|...+++.
T Consensus 289 pGVLFIDEvHMLD--------IEcFsFlNrAlE~d~~PiiimaTNrgit~iRGTn~~SphGiP~D~lDR~lII~t~py~~ 360 (454)
T KOG2680|consen 289 PGVLFIDEVHMLD--------IECFSFLNRALENDMAPIIIMATNRGITRIRGTNYRSPHGIPIDLLDRMLIISTQPYTE 360 (454)
T ss_pred cceEEEeeehhhh--------hHHHHHHHHHhhhccCcEEEEEcCCceEEeecCCCCCCCCCcHHHhhhhheeecccCcH
Confidence 5699999999984 56778888888743 33444455432 23233467888999998888888899
Q ss_pred HHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCCcchhhHHHHHHHHH
Q 002012 435 ENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLPDKAIDLVDEAAAK 491 (982)
Q Consensus 435 ~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~p~~a~~lld~a~~~ 491 (982)
+++.+||+.-++. .++.+++++++.+...... ..-+.++.|+..|...
T Consensus 361 ~d~~~IL~iRc~E----Edv~m~~~A~d~Lt~i~~~-----tsLRYai~Lit~a~~~ 408 (454)
T KOG2680|consen 361 EDIKKILRIRCQE----EDVEMNPDALDLLTKIGEA-----TSLRYAIHLITAASLV 408 (454)
T ss_pred HHHHHHHHhhhhh----hccccCHHHHHHHHHhhhh-----hhHHHHHHHHHHHHHH
Confidence 9999999877765 6899999999998877431 2224566776655443
No 484
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.16 E-value=2.2e-06 Score=82.74 Aligned_cols=97 Identities=23% Similarity=0.353 Sum_probs=64.3
Q ss_pred eEEeecCCCCchHHHHHHHHHHhcCC-----CCceEEEeccccccccccc----cccCCCCCc--cccccCCchhHHHhh
Q 002012 695 SFMFMGPTGVGKTELGKALADFLFNT-----ENALVRIDMSEYMEKHSVS----RLVGAPPGY--VGYEEGGQLTEVVRR 763 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~~~-----~~~~v~i~~s~~~~~~~~~----~l~g~~~g~--vg~~~~~~l~~~l~~ 763 (982)
.++++||+|+|||++++.+++.+... ..+++.+++........+. ..++.+... ....-...+...+..
T Consensus 6 ~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~~ 85 (131)
T PF13401_consen 6 ILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALDR 85 (131)
T ss_dssp -EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHHH
T ss_pred ccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHHh
Confidence 48999999999999999999987321 4667788887765322221 123332211 111111345566666
Q ss_pred CCCeEEEEcccccc-CHHHHHHHHHhhhc
Q 002012 764 RPYSVVLFDEIEKA-HQDVFNILLQLLDD 791 (982)
Q Consensus 764 ~~~~Vl~lDEidkl-~~~~~~~Ll~~le~ 791 (982)
....+|+|||+|.+ .....+.|..++++
T Consensus 86 ~~~~~lviDe~~~l~~~~~l~~l~~l~~~ 114 (131)
T PF13401_consen 86 RRVVLLVIDEADHLFSDEFLEFLRSLLNE 114 (131)
T ss_dssp CTEEEEEEETTHHHHTHHHHHHHHHHTCS
T ss_pred cCCeEEEEeChHhcCCHHHHHHHHHHHhC
Confidence 76679999999999 99999999888873
No 485
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=98.15 E-value=2.1e-05 Score=80.19 Aligned_cols=115 Identities=24% Similarity=0.303 Sum_probs=76.2
Q ss_pred HHHHhccCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEeccccccccccccc-------------HH
Q 002012 281 CIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGTCYRGD-------------FE 347 (982)
Q Consensus 281 l~~~L~~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~~~~g~-------------~e 347 (982)
++..|....+.|.|++|||||||||+.+-+|+.+..+.- .....++.-+|-++-++| ...|- -.
T Consensus 128 li~~ly~~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~--~~l~kkv~IiDersEIag-~~~gvpq~~~g~R~dVld~c 204 (308)
T COG3854 128 LIKDLYQNGWLNTLIIGPPQVGKTTLLRDIARLLSDGIN--QFLPKKVGIIDERSEIAG-CLNGVPQHGRGRRMDVLDPC 204 (308)
T ss_pred HHHHHHhcCceeeEEecCCCCChHHHHHHHHHHhhcccc--ccCCceEEEEeccchhhc-cccCCchhhhhhhhhhcccc
Confidence 666777789999999999999999999999988755422 334678888887666655 23331 11
Q ss_pred HHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCCCeEEEEecCchhH
Q 002012 348 KRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRGELRCIGATTLNEY 410 (982)
Q Consensus 348 ~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g~i~vI~at~~~~~ 410 (982)
-+-..++..++. ..|-|+++|||.+.. ++ ..++.+++. .+.+|.|..-...
T Consensus 205 pk~~gmmmaIrs-m~PEViIvDEIGt~~---------d~-~A~~ta~~~-GVkli~TaHG~~i 255 (308)
T COG3854 205 PKAEGMMMAIRS-MSPEVIIVDEIGTEE---------DA-LAILTALHA-GVKLITTAHGNGI 255 (308)
T ss_pred hHHHHHHHHHHh-cCCcEEEEeccccHH---------HH-HHHHHHHhc-CcEEEEeeccccH
Confidence 112233444443 567799999999852 33 234455543 5777777765553
No 486
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.14 E-value=1.8e-05 Score=83.96 Aligned_cols=132 Identities=20% Similarity=0.246 Sum_probs=81.2
Q ss_pred HHHHHHhccCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccccccccccHHHHHHHHHHHHH
Q 002012 279 RRCIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGTCYRGDFEKRLKAVLKEVT 358 (982)
Q Consensus 279 ~~l~~~L~~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~~~~g~~e~~l~~l~~~~~ 358 (982)
..+.+++. ......++||+|||||..++.||+.+ |..++.++++..+.- ..+..++.-+.
T Consensus 23 ~~l~~al~--~~~~~~~~GpagtGKtetik~La~~l----------G~~~~vfnc~~~~~~--------~~l~ril~G~~ 82 (231)
T PF12774_consen 23 LTLTQALS--LNLGGALSGPAGTGKTETIKDLARAL----------GRFVVVFNCSEQMDY--------QSLSRILKGLA 82 (231)
T ss_dssp HHHHHHHC--TTTEEEEESSTTSSHHHHHHHHHHCT----------T--EEEEETTSSS-H--------HHHHHHHHHHH
T ss_pred HHHHHHhc--cCCCCCCcCCCCCCchhHHHHHHHHh----------CCeEEEecccccccH--------HHHHHHHHHHh
Confidence 33444443 33466789999999999999999998 999999999876532 24556666555
Q ss_pred hcCCCeEEEEccchhhhhCCCCCchhhHHHHH-------HhhhcCC---------------CeEEEEecCchhHhhhhhc
Q 002012 359 KSNGQIILFIDELHTIIGAGNQSGAMDASNML-------KPMLGRG---------------ELRCIGATTLNEYRNYIEK 416 (982)
Q Consensus 359 ~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L-------~~~le~g---------------~i~vI~at~~~~~~~~~~~ 416 (982)
.. ++++++||++++. .++...+ ...+..+ ...+..|+| +.|....++
T Consensus 83 ~~--GaW~cfdefnrl~--------~~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~n-p~y~gr~~L 151 (231)
T PF12774_consen 83 QS--GAWLCFDEFNRLS--------EEVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMN-PGYAGRSEL 151 (231)
T ss_dssp HH--T-EEEEETCCCSS--------HHHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE--B-CCCC--S
T ss_pred hc--Cchhhhhhhhhhh--------HHHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeec-cccCCcccC
Confidence 43 4699999999985 2222222 2222111 234455555 457777789
Q ss_pred ChHHHhccceEEecCCCHHHHHHHH
Q 002012 417 DPALERRFQQVFCDQPSVENTISIL 441 (982)
Q Consensus 417 d~al~rRf~~i~i~~Ps~~e~~~IL 441 (982)
++.|+.-|.+|.+..|+...+.+++
T Consensus 152 P~nLk~lFRpvam~~PD~~~I~ei~ 176 (231)
T PF12774_consen 152 PENLKALFRPVAMMVPDLSLIAEIL 176 (231)
T ss_dssp -HHHCTTEEEEE--S--HHHHHHHH
T ss_pred CHhHHHHhheeEEeCCCHHHHHHHH
Confidence 9999999999999999987665553
No 487
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.13 E-value=0.00012 Score=79.21 Aligned_cols=229 Identities=15% Similarity=0.165 Sum_probs=121.4
Q ss_pred HHhhhcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhc---CC---CCceEEEeccc
Q 002012 658 EEVLHKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLF---NT---ENALVRIDMSE 731 (982)
Q Consensus 658 ~~~l~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~---~~---~~~~v~i~~s~ 731 (982)
........||.+.|.+.+...-.... .+ +.....++|++|++|.|||++++.+.+... +. ..|++.+.+..
T Consensus 29 ~~i~~~rWIgY~~A~~~L~~L~~Ll~--~P-~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~ 105 (302)
T PF05621_consen 29 AYIRADRWIGYPRAKEALDRLEELLE--YP-KRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPP 105 (302)
T ss_pred HHHhcCCeecCHHHHHHHHHHHHHHh--CC-cccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCC
Confidence 33445778888887665544333221 11 122234699999999999999999998662 11 13677777765
Q ss_pred cccccccc----cccCCCCCccc--cccCCchhHHHhhCCCeEEEEcccccc---CHHHHHHHHHhhhcCceecCCCcEE
Q 002012 732 YMEKHSVS----RLVGAPPGYVG--YEEGGQLTEVVRRRPYSVVLFDEIEKA---HQDVFNILLQLLDDGRITDSQGRTV 802 (982)
Q Consensus 732 ~~~~~~~~----~l~g~~~g~vg--~~~~~~l~~~l~~~~~~Vl~lDEidkl---~~~~~~~Ll~~le~g~~~d~~g~~~ 802 (982)
-.+...+. ..+|.|..... .....+....++...-.+|+|||++.+ ...-|..++.+|.. + |..
T Consensus 106 ~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~--L----~Ne- 178 (302)
T PF05621_consen 106 EPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKF--L----GNE- 178 (302)
T ss_pred CCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHH--H----hhc-
Confidence 43332222 23455532211 111123457788888899999999986 22233333333321 0 000
Q ss_pred ecccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCCh-hHHHHHHHHHHH
Q 002012 803 SFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDS-KEISKIVEIQMN 881 (982)
Q Consensus 803 ~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~-~~l~~il~~~l~ 881 (982)
-++-||+.+....-.... -++++.+|| ..+..++... ++...++..+-.
T Consensus 179 --L~ipiV~vGt~~A~~al~---------------------------~D~QLa~RF-~~~~Lp~W~~d~ef~~LL~s~e~ 228 (302)
T PF05621_consen 179 --LQIPIVGVGTREAYRALR---------------------------TDPQLASRF-EPFELPRWELDEEFRRLLASFER 228 (302)
T ss_pred --cCCCeEEeccHHHHHHhc---------------------------cCHHHHhcc-CCccCCCCCCCcHHHHHHHHHHH
Confidence 123355554332221111 267889999 4667777665 455554433322
Q ss_pred HHHHHHHhCCCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHcC
Q 002012 882 RVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAILKG 937 (982)
Q Consensus 882 ~~~~~~~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~l~~~la~~~l~~ 937 (982)
.+--+...---+++...+|...+ .+..| .+.+++.. +-..++-+|
T Consensus 229 ----~LPLr~~S~l~~~~la~~i~~~s-~G~iG--~l~~ll~~----aA~~AI~sG 273 (302)
T PF05621_consen 229 ----ALPLRKPSNLASPELARRIHERS-EGLIG--ELSRLLNA----AAIAAIRSG 273 (302)
T ss_pred ----hCCCCCCCCCCCHHHHHHHHHHc-CCchH--HHHHHHHH----HHHHHHhcC
Confidence 22111111223456667776652 34455 66666665 333344554
No 488
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.13 E-value=2e-05 Score=87.13 Aligned_cols=172 Identities=16% Similarity=0.153 Sum_probs=92.2
Q ss_pred chHHHHHHHHHhcc--CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccc------------c
Q 002012 274 RDDEIRRCIQILSR--RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVA------------G 339 (982)
Q Consensus 274 ~~~~i~~l~~~L~~--~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~------------~ 339 (982)
||.+++++.+.|.. ....-+.|+|++|+|||++|..+++...... . . ..+++++.+.-.. +
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~---~-f-~~v~wv~~~~~~~~~~~~~~i~~~l~ 75 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKN---R-F-DGVIWVSLSKNPSLEQLLEQILRQLG 75 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCC---C-C-TEEEEEEEES-SCCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccccccc---c-c-cccccccccccccccccccccccccc
Confidence 57899999999987 4555677889999999999999998732111 1 1 2345555432110 0
Q ss_pred cc-----ccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhc--CCCeEEEEecCchhHhh
Q 002012 340 TC-----YRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLG--RGELRCIGATTLNEYRN 412 (982)
Q Consensus 340 ~~-----~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le--~g~i~vI~at~~~~~~~ 412 (982)
.. ...+.+.....+.+.+. +.+++|+||+++... .. +.+...+. ..+..+|.||.....
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~L~--~~~~LlVlDdv~~~~---------~~-~~l~~~~~~~~~~~kilvTTR~~~v-- 141 (287)
T PF00931_consen 76 EPDSSISDPKDIEELQDQLRELLK--DKRCLLVLDDVWDEE---------DL-EELREPLPSFSSGSKILVTTRDRSV-- 141 (287)
T ss_dssp CC-STSSCCSSHHHHHHHHHHHHC--CTSEEEEEEEE-SHH---------HH--------HCHHSS-EEEEEESCGGG--
T ss_pred ccccccccccccccccccchhhhc--cccceeeeeeecccc---------cc-ccccccccccccccccccccccccc--
Confidence 00 12233443333333332 458999999998753 12 11222221 235677777766542
Q ss_pred hhhcChHHHhccceEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhh
Q 002012 413 YIEKDPALERRFQQVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLAD 469 (982)
Q Consensus 413 ~~~~d~al~rRf~~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~ 469 (982)
-..+......+.+...+.++..+++......-.. ......++....++..++
T Consensus 142 ----~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~-~~~~~~~~~~~~i~~~c~ 193 (287)
T PF00931_consen 142 ----AGSLGGTDKVIELEPLSEEEALELFKKRAGRKES-ESPEDLEDLAKEIVEKCG 193 (287)
T ss_dssp ----GTTHHSCEEEEECSS--HHHHHHHHHHHHTSHS-----TTSCTHHHHHHHHTT
T ss_pred ----cccccccccccccccccccccccccccccccccc-cccccccccccccccccc
Confidence 1112222557899988999999998766443210 011122344556666654
No 489
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.12 E-value=8.1e-06 Score=90.47 Aligned_cols=109 Identities=21% Similarity=0.291 Sum_probs=70.5
Q ss_pred eEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccccccccCCCCCccccccCCchhHHHhhCCCeEEEEccc
Q 002012 695 SFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEI 774 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~~~~~Vl~lDEi 774 (982)
+++|+||+|||||++|.+||..+...+..+..+.++++.... ...++.. ......+.+.+++ ||+|||+
T Consensus 158 gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~l--k~~~~~~-------~~~~~l~~l~~~d--lLiIDDi 226 (306)
T PRK08939 158 GLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIREL--KNSISDG-------SVKEKIDAVKEAP--VLMLDDI 226 (306)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHH--HHHHhcC-------cHHHHHHHhcCCC--EEEEecC
Confidence 599999999999999999999997667777777777764321 1111110 0012344455555 9999999
Q ss_pred cc--cCHHHHHHHHH-hhhcCceecCCCcEEecccEEEEEecCCChHHHHHhh
Q 002012 775 EK--AHQDVFNILLQ-LLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETL 824 (982)
Q Consensus 775 dk--l~~~~~~~Ll~-~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~i~~~~ 824 (982)
.. +.+...+.++. +++. ++. .+.-.|+|||...+.+.+.+
T Consensus 227 G~e~~s~~~~~~ll~~Il~~-R~~---------~~~~ti~TSNl~~~el~~~~ 269 (306)
T PRK08939 227 GAEQMSSWVRDEVLGVILQY-RMQ---------EELPTFFTSNFDFDELEHHL 269 (306)
T ss_pred CCccccHHHHHHHHHHHHHH-HHH---------CCCeEEEECCCCHHHHHHHH
Confidence 64 44455544544 4443 211 13468899999887766543
No 490
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.10 E-value=3.9e-06 Score=89.36 Aligned_cols=190 Identities=22% Similarity=0.371 Sum_probs=95.4
Q ss_pred ccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEecccccccc---------
Q 002012 666 IGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKH--------- 736 (982)
Q Consensus 666 iGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~--------- 736 (982)
+|.+..++.|.+.+... +..+++++||.|+|||++.+.+.+.+-..+...+.+++.......
T Consensus 2 ~gR~~el~~l~~~l~~~---------~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 72 (234)
T PF01637_consen 2 FGREKELEKLKELLESG---------PSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEET 72 (234)
T ss_dssp -S-HHHHHHHHHCHHH-----------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhh---------cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHH
Confidence 57777777787766532 123599999999999999999999872222222222221111100
Q ss_pred ----ccccccCCC-CCccc-----------cccCCchhHHHhhCC-CeEEEEccccccC------HHHHHHHHHhhhcCc
Q 002012 737 ----SVSRLVGAP-PGYVG-----------YEEGGQLTEVVRRRP-YSVVLFDEIEKAH------QDVFNILLQLLDDGR 793 (982)
Q Consensus 737 ----~~~~l~g~~-~g~vg-----------~~~~~~l~~~l~~~~-~~Vl~lDEidkl~------~~~~~~Ll~~le~g~ 793 (982)
.+...++.. ++..+ ...-..+.+.+.+.. ..||+|||++.+. +.....|..+++...
T Consensus 73 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~ 152 (234)
T PF01637_consen 73 SLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLL 152 (234)
T ss_dssp HHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhcc
Confidence 000101110 10000 001112334444433 3799999999998 677788888887521
Q ss_pred eecCCCcEEecccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHH
Q 002012 794 ITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEIS 873 (982)
Q Consensus 794 ~~d~~g~~~~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~ 873 (982)
...+..+|+++.... +...+ .. -.+.+.+|+.. +.+.|++.++..
T Consensus 153 ---------~~~~~~~v~~~S~~~--~~~~~----------------------~~-~~~~~~~~~~~-~~l~~l~~~e~~ 197 (234)
T PF01637_consen 153 ---------SQQNVSIVITGSSDS--LMEEF----------------------LD-DKSPLFGRFSH-IELKPLSKEEAR 197 (234)
T ss_dssp -----------TTEEEEEEESSHH--HHHHT----------------------T--TTSTTTT---E-EEE----HHHHH
T ss_pred ---------ccCCceEEEECCchH--HHHHh----------------------hc-ccCccccccce-EEEeeCCHHHHH
Confidence 112444445443311 11100 01 13457888876 999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCccCCHHHHHHHHhc
Q 002012 874 KIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGIL 907 (982)
Q Consensus 874 ~il~~~l~~~~~~~~~~~~~l~i~~~a~~~L~~~ 907 (982)
+++...+.. . ..+.++++.++.+...
T Consensus 198 ~~~~~~~~~-------~-~~~~~~~~~~~~i~~~ 223 (234)
T PF01637_consen 198 EFLKELFKE-------L-IKLPFSDEDIEEIYSL 223 (234)
T ss_dssp HHHHHHHHC-------C-------HHHHHHHHHH
T ss_pred HHHHHHHHH-------h-hcccCCHHHHHHHHHH
Confidence 998887664 1 2234588888777664
No 491
>PF02861 Clp_N: Clp amino terminal domain; InterPro: IPR004176 This short domain is found in one or two copies at the amino terminus of ClpA and ClpB proteins from bacteria and eukaryotes. The function of these domains is uncertain but they may form a protein binding site []. The proteins are thought to be subunits of ATP-dependent proteases which act as chaperones to target the proteases to substrates.; GO: 0019538 protein metabolic process; PDB: 3FH2_A 3ZRJ_A 3ZRI_A 1QVR_C 3FES_C 2Y1R_F 3PXG_D 2Y1Q_A 3PXI_C 2K77_A ....
Probab=98.08 E-value=2.9e-06 Score=68.05 Aligned_cols=52 Identities=31% Similarity=0.557 Sum_probs=45.8
Q ss_pred HHHHHHHcCCCccCHHHHHHHHh-cCCcccccccccccCCHHHHHHHHHhhhc
Q 002012 185 AQRIKKEMEDDFVSVEHLLLAFL-SDDRFGRLLFNDIRLNEKDLKDAVKAVRG 236 (982)
Q Consensus 185 A~~~a~~~g~~~I~~ehLllall-~~~~~a~~lL~~~gi~~~~l~~~i~~~~~ 236 (982)
|..+|+++||.+|+++|||+||+ ++++.+.++|+++|++.+.+++.+.+.+|
T Consensus 1 A~~~A~~~~~~~i~~eHlL~all~~~~~~~~~il~~~~id~~~l~~~i~~~lg 53 (53)
T PF02861_consen 1 AQELARERGHQYISPEHLLLALLEDPDSIAARILKKLGIDPEQLKAAIEKALG 53 (53)
T ss_dssp HHHHHHHTTBSSE-HHHHHHHHHHHTTSHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred CHHHHHHcCCCcccHHHHHHHHHhhhhHHHHHHHHHcCCCHHHHHHHHHHHhC
Confidence 67889999999999999999999 45678889999999999999999987653
No 492
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.08 E-value=5.2e-06 Score=92.00 Aligned_cols=104 Identities=14% Similarity=0.226 Sum_probs=63.6
Q ss_pred CCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccccccccccHHHHHHHHHHHHHhcCCCeEEEE
Q 002012 289 TKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFI 368 (982)
Q Consensus 289 ~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~I 368 (982)
...+++|+||+|||||+|+.++|+.+... +..+..+.+..+....+.. -....+...++.+...+ +|+|
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~-------g~~v~~~~~~~l~~~lk~~-~~~~~~~~~l~~l~~~d---lLiI 223 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKK-------GVSSTLLHFPEFIRELKNS-ISDGSVKEKIDAVKEAP---VLML 223 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHc-------CCCEEEEEHHHHHHHHHHH-HhcCcHHHHHHHhcCCC---EEEE
Confidence 45689999999999999999999999643 6777777776654321100 00011234455554333 9999
Q ss_pred ccchhhhhCCCCCchhhHHHHHHhhhc---CCCeEEEEecCch
Q 002012 369 DELHTIIGAGNQSGAMDASNMLKPMLG---RGELRCIGATTLN 408 (982)
Q Consensus 369 DEi~~l~~~~~~~~~~~~~~~L~~~le---~g~i~vI~at~~~ 408 (982)
||+..-... .....++|..+++ ..+...|.|||..
T Consensus 224 DDiG~e~~s-----~~~~~~ll~~Il~~R~~~~~~ti~TSNl~ 261 (306)
T PRK08939 224 DDIGAEQMS-----SWVRDEVLGVILQYRMQEELPTFFTSNFD 261 (306)
T ss_pred ecCCCcccc-----HHHHHHHHHHHHHHHHHCCCeEEEECCCC
Confidence 999864211 1111134444443 2456778888865
No 493
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.07 E-value=8.2e-05 Score=87.18 Aligned_cols=216 Identities=17% Similarity=0.190 Sum_probs=138.2
Q ss_pred hhcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhc-------CCCCceEEEeccccc
Q 002012 661 LHKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLF-------NTENALVRIDMSEYM 733 (982)
Q Consensus 661 l~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~-------~~~~~~v~i~~s~~~ 733 (982)
..+.+.+.+.....|-..++..... .....-+.+.|-||||||.+...+-+.|. .....++.||+-.+.
T Consensus 394 vp~sLpcRe~E~~~I~~f~~~~i~~----~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~ 469 (767)
T KOG1514|consen 394 VPESLPCRENEFSEIEDFLRSFISD----QGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLA 469 (767)
T ss_pred ccccccchhHHHHHHHHHHHhhcCC----CCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeec
Confidence 4566778888888887777654321 11222488999999999999999998773 223467788887776
Q ss_pred ccccccc-----ccCCCCCccccccCCchhHHHh----hCCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEec
Q 002012 734 EKHSVSR-----LVGAPPGYVGYEEGGQLTEVVR----RRPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSF 804 (982)
Q Consensus 734 ~~~~~~~-----l~g~~~g~vg~~~~~~l~~~l~----~~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~ 804 (982)
....+.. +-|....+... -..|...+. +.+.+||+|||.|.+-..-|+.|+.+++--....
T Consensus 470 ~~~~~Y~~I~~~lsg~~~~~~~a--l~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~-------- 539 (767)
T KOG1514|consen 470 SPREIYEKIWEALSGERVTWDAA--LEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKN-------- 539 (767)
T ss_pred CHHHHHHHHHHhcccCcccHHHH--HHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCC--------
Confidence 5544432 22322211000 000111111 2345799999999999888999999998633322
Q ss_pred ccEEEEEecCCC--hHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhcccc-ccccCCCChhHHHHHHHHHHH
Q 002012 805 TNCVVIMTSNIG--SHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDE-YIVFQPLDSKEISKIVEIQMN 881 (982)
Q Consensus 805 ~~~iiI~tsn~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~-ii~F~pl~~~~l~~il~~~l~ 881 (982)
++.+||+.+|.- ++.+ |.+..-+|++. .+.|.|++.+++.+|+...|.
T Consensus 540 sKLvvi~IaNTmdlPEr~-----------------------------l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~ 590 (767)
T KOG1514|consen 540 SKLVVIAIANTMDLPERL-----------------------------LMNRVSSRLGLTRICFQPYTHEQLQEIISARLK 590 (767)
T ss_pred CceEEEEecccccCHHHH-----------------------------hccchhhhccceeeecCCCCHHHHHHHHHHhhc
Confidence 467888877742 2211 22333466654 589999999999999998887
Q ss_pred HHHHHHHhCCCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHH
Q 002012 882 RVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENE 929 (982)
Q Consensus 882 ~~~~~~~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~l~~~ 929 (982)
.+ -.|+++|+++++.+.-.-...+|-...++.+..+-+
T Consensus 591 ~~----------~~f~~~aielvarkVAavSGDaRraldic~RA~Eia 628 (767)
T KOG1514|consen 591 GL----------DAFENKAIELVARKVAAVSGDARRALDICRRAAEIA 628 (767)
T ss_pred ch----------hhcchhHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 53 346888888888763322233677777777754443
No 494
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.07 E-value=0.00014 Score=85.34 Aligned_cols=208 Identities=17% Similarity=0.222 Sum_probs=118.8
Q ss_pred CcccchHHHHHHHHHhcc-----CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccccc----
Q 002012 270 PVIGRDDEIRRCIQILSR-----RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGT---- 340 (982)
Q Consensus 270 ~liG~~~~i~~l~~~L~~-----~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~---- 340 (982)
-+-+|+.+...+-..+.. .....+.+.|-||||||..++.+.+.|........+....++++|.-.+.+..
T Consensus 397 sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~ 476 (767)
T KOG1514|consen 397 SLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYE 476 (767)
T ss_pred cccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHH
Confidence 367888877666554432 22234567799999999999999998874322223346677777754433210
Q ss_pred ----cccc---cHHHHHHHHHHHHH---hcCCCeEEEEccchhhhhCCCCCchhhH-HHHHH-hhhcCCCeEEEEecCch
Q 002012 341 ----CYRG---DFEKRLKAVLKEVT---KSNGQIILFIDELHTIIGAGNQSGAMDA-SNMLK-PMLGRGELRCIGATTLN 408 (982)
Q Consensus 341 ----~~~g---~~e~~l~~l~~~~~---~~~~~~IL~IDEi~~l~~~~~~~~~~~~-~~~L~-~~le~g~i~vI~at~~~ 408 (982)
.+.| -+...+..+-.... ....++||+|||+|.|.... +++ .|++. +.+.+.++.||+..|..
T Consensus 477 ~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~-----QdVlYn~fdWpt~~~sKLvvi~IaNTm 551 (767)
T KOG1514|consen 477 KIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRS-----QDVLYNIFDWPTLKNSKLVVIAIANTM 551 (767)
T ss_pred HHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhccc-----HHHHHHHhcCCcCCCCceEEEEecccc
Confidence 0111 11111211111111 22456899999999998433 343 33332 34457788888888776
Q ss_pred hHhhhhhcChHHHhcc--ceEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhc-cCCCcchhhHHH
Q 002012 409 EYRNYIEKDPALERRF--QQVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYIT-ERFLPDKAIDLV 485 (982)
Q Consensus 409 ~~~~~~~~d~al~rRf--~~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~-~~~~p~~a~~ll 485 (982)
++-.. .+.+...+|+ ..|.|.+++-+++.+|+..-+... -.+..++++.++. .+. ...-..+|.+++
T Consensus 552 dlPEr-~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~-----~~f~~~aielvar----kVAavSGDaRraldic 621 (767)
T KOG1514|consen 552 DLPER-LLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGL-----DAFENKAIELVAR----KVAAVSGDARRALDIC 621 (767)
T ss_pred cCHHH-HhccchhhhccceeeecCCCCHHHHHHHHHHhhcch-----hhcchhHHHHHHH----HHHhccccHHHHHHHH
Confidence 53322 2445566675 589999999999999987544432 1234444443333 222 122335566666
Q ss_pred HHHHHHh
Q 002012 486 DEAAAKL 492 (982)
Q Consensus 486 d~a~~~~ 492 (982)
+.|...+
T Consensus 622 ~RA~Eia 628 (767)
T KOG1514|consen 622 RRAAEIA 628 (767)
T ss_pred HHHHHHh
Confidence 6665443
No 495
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.07 E-value=4.3e-05 Score=88.82 Aligned_cols=183 Identities=19% Similarity=0.234 Sum_probs=101.9
Q ss_pred cccchHHHHHHHHHhcc------------CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccc
Q 002012 271 VIGRDDEIRRCIQILSR------------RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVA 338 (982)
Q Consensus 271 liG~~~~i~~l~~~L~~------------~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~ 338 (982)
+-|.|+..+-++-.|-. +..-|+||+|.||||||.+.+.+++...+|..-. .+|..-+.+. +
T Consensus 431 Iye~edvKkglLLqLfGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTS-GkGsSavGLT-----a 504 (804)
T KOG0478|consen 431 IYELEDVKKGLLLQLFGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTS-GKGSSAVGLT-----A 504 (804)
T ss_pred hhcccchhhhHHHHHhcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceeec-CCccchhcce-----e
Confidence 55666655555544422 1225899999999999999999999876553211 1111111111 1
Q ss_pred cccccccHHHHHHHHHHH---HHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcC---------------CCeE
Q 002012 339 GTCYRGDFEKRLKAVLKE---VTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGR---------------GELR 400 (982)
Q Consensus 339 ~~~~~g~~e~~l~~l~~~---~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~---------------g~i~ 400 (982)
.....++. ++++-+ +..++ +.|..|||+|.|. ....++|.++|+. .+..
T Consensus 505 yVtrd~dt----kqlVLesGALVLSD-~GiCCIDEFDKM~--------dStrSvLhEvMEQQTvSIAKAGII~sLNAR~S 571 (804)
T KOG0478|consen 505 YVTKDPDT----RQLVLESGALVLSD-NGICCIDEFDKMS--------DSTRSVLHEVMEQQTLSIAKAGIIASLNARCS 571 (804)
T ss_pred eEEecCcc----ceeeeecCcEEEcC-CceEEchhhhhhh--------HHHHHHHHHHHHHhhhhHhhcceeeeccccce
Confidence 00000110 111100 11123 3489999999996 3344677777763 2557
Q ss_pred EEEecCchh--------HhhhhhcChHHHhccceEEe--cCCCHHHHHHHHHHHHHHHhh----hcCCccChHHHHHHHH
Q 002012 401 CIGATTLNE--------YRNYIEKDPALERRFQQVFC--DQPSVENTISILRGLRERYEL----HHGVKISDSALVSAAV 466 (982)
Q Consensus 401 vI~at~~~~--------~~~~~~~d~al~rRf~~i~i--~~Ps~~e~~~IL~~~~~~~~~----~~~v~i~~~~l~~~~~ 466 (982)
||+++|+.. .-+.+.++|.|++||+.|++ +.|+...=..+-.++...|.. ....-++-..+...+.
T Consensus 572 VLAaANP~~skynp~k~i~eNI~LpptLLSRFDLIylllD~~DE~~Dr~La~HivsLy~e~~~~~~~~~~d~~~lr~yi~ 651 (804)
T KOG0478|consen 572 VLAAANPIRSKYNPNKSIIENINLPPTLLSRFDLIFLLLDKPDERSDRRLADHIVALYPETGEKQGSEAIDMNLLRDYIR 651 (804)
T ss_pred eeeeeccccccCCCCCchhhccCCChhhhhhhcEEEEEecCcchhHHHHHHHHHHHhcccccccchhHHHhHHHHHHHHH
Confidence 889998643 22345689999999995554 455544334555666666543 1122334444555566
Q ss_pred Hhhhhh
Q 002012 467 LADRYI 472 (982)
Q Consensus 467 ~s~r~i 472 (982)
++.+.+
T Consensus 652 yArk~i 657 (804)
T KOG0478|consen 652 YARKNI 657 (804)
T ss_pred HHhccC
Confidence 655444
No 496
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=98.06 E-value=4.3e-06 Score=95.59 Aligned_cols=145 Identities=19% Similarity=0.264 Sum_probs=91.0
Q ss_pred HHHhhhcccccchHHHHHHHHHHHHHhcC---CCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEe-----
Q 002012 657 LEEVLHKRVIGQDIAVKSVADAIRRSRAG---LSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRID----- 728 (982)
Q Consensus 657 l~~~l~~~iiGq~~a~~~l~~~i~~~~~g---~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~----- 728 (982)
+...+-..|+|+..++.+++-++-..... ....-+.-.|+||+|.|||||+-+.+.+++.. ...+++-.
T Consensus 443 IiaSiaPsIyGh~~VK~AvAlaLfGGv~kn~~~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s---~RAV~tTGqGASa 519 (854)
T KOG0477|consen 443 IIASIAPSIYGHEDVKRAVALALFGGVPKNPGGKHKVRGDINVLLLGDPGTAKSQFLKYAEKTS---PRAVFTTGQGASA 519 (854)
T ss_pred HHHhhCchhhchHHHHHHHHHHHhcCCccCCCCCceeccceeEEEecCCCccHHHHHHHHHhcC---cceeEeccCCccc
Confidence 44556678999999998887777421110 00111233479999999999999999999875 22221111
Q ss_pred --ccccccccccccccCCCCCccccccCCchhHHHhhCCCeEEEEccccccCHHHHHHHHHhhhcCceecCC-CcEEec-
Q 002012 729 --MSEYMEKHSVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQ-GRTVSF- 804 (982)
Q Consensus 729 --~s~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~-g~~~~~- 804 (982)
...+..++.+.+ .|. -+ .+++-.+..+|-+|||+|||+..-...+-.+||...+..+. |-...+
T Consensus 520 vGLTa~v~KdPvtr------EWT--LE----aGALVLADkGvClIDEFDKMndqDRtSIHEAMEQQSISISKAGIVtsLq 587 (854)
T KOG0477|consen 520 VGLTAYVRKDPVTR------EWT--LE----AGALVLADKGVCLIDEFDKMNDQDRTSIHEAMEQQSISISKAGIVTSLQ 587 (854)
T ss_pred cceeEEEeeCCccc------eee--ec----cCeEEEccCceEEeehhhhhcccccchHHHHHHhcchhhhhhhHHHHHH
Confidence 001111111100 000 01 12444566789999999999999889999999987776654 333333
Q ss_pred ccEEEEEecCCC
Q 002012 805 TNCVVIMTSNIG 816 (982)
Q Consensus 805 ~~~iiI~tsn~~ 816 (982)
.+|.+|+++|+-
T Consensus 588 ArctvIAAanPi 599 (854)
T KOG0477|consen 588 ARCTVIAAANPI 599 (854)
T ss_pred hhhhhheecCCC
Confidence 679999999973
No 497
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.06 E-value=6.3e-05 Score=72.97 Aligned_cols=143 Identities=19% Similarity=0.271 Sum_probs=76.4
Q ss_pred CCCCcEEeCCCCCcHHHHHHHHHHHhhcCCC-------CC-----CCCCCeEEEEeccc--cc-----cc---cccc---
Q 002012 289 TKNNPVIIGEPGVGKTAIAEGLAQRIVRGDV-------PE-----TLQNRKLISLDMAS--LV-----AG---TCYR--- 343 (982)
Q Consensus 289 ~~~~iLL~GppGvGKT~la~~la~~l~~~~~-------p~-----~l~~~~v~~l~~~~--l~-----~~---~~~~--- 343 (982)
....+.++|+||+||||++.-++..+.+..+ |+ ...+..++.++-.. +. ++ .+|.
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~v 83 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVNV 83 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEeeH
Confidence 3446899999999999999999999866421 11 11233333333110 00 00 0111
Q ss_pred ccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCCCeEEEEecCchhHhhhhhcChHH---
Q 002012 344 GDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRGELRCIGATTLNEYRNYIEKDPAL--- 420 (982)
Q Consensus 344 g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g~i~vI~at~~~~~~~~~~~d~al--- 420 (982)
..+++..-..+..+... .. |++||||..|-- .+..+...+...+..+.. +|++-.... .||-+
T Consensus 84 ~~le~i~~~al~rA~~~-aD-vIIIDEIGpMEl-----ks~~f~~~ve~vl~~~kp-liatlHrrs------r~P~v~~i 149 (179)
T COG1618 84 EGLEEIAIPALRRALEE-AD-VIIIDEIGPMEL-----KSKKFREAVEEVLKSGKP-LIATLHRRS------RHPLVQRI 149 (179)
T ss_pred HHHHHHhHHHHHHHhhc-CC-EEEEecccchhh-----ccHHHHHHHHHHhcCCCc-EEEEEeccc------CChHHHHh
Confidence 12333333344444332 12 899999998742 235566677777877666 666654432 24433
Q ss_pred HhccceEEecCCCHHHHHHHHHHHHHH
Q 002012 421 ERRFQQVFCDQPSVENTISILRGLRER 447 (982)
Q Consensus 421 ~rRf~~i~i~~Ps~~e~~~IL~~~~~~ 447 (982)
++++..+.+ .+++.+-.|+..++..
T Consensus 150 k~~~~v~v~--lt~~NR~~i~~~Il~~ 174 (179)
T COG1618 150 KKLGGVYVF--LTPENRNRILNEILSV 174 (179)
T ss_pred hhcCCEEEE--EccchhhHHHHHHHHH
Confidence 335544443 4444444666555544
No 498
>PRK09183 transposase/IS protein; Provisional
Probab=98.06 E-value=9.9e-06 Score=87.87 Aligned_cols=127 Identities=24% Similarity=0.315 Sum_probs=71.0
Q ss_pred CCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccccccccccHHHHHHHHHHHHHhcCCCeEEEE
Q 002012 289 TKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFI 368 (982)
Q Consensus 289 ~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~I 368 (982)
...|++|+||||||||+++.+++..... .+..+..+++.++..... .......+...+.... ..+.+|+|
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~-------~G~~v~~~~~~~l~~~l~-~a~~~~~~~~~~~~~~--~~~dlLii 170 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVR-------AGIKVRFTTAADLLLQLS-TAQRQGRYKTTLQRGV--MAPRLLII 170 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHH-------cCCeEEEEeHHHHHHHHH-HHHHCCcHHHHHHHHh--cCCCEEEE
Confidence 4568999999999999999999987643 267777777665542210 0000111223333321 23348999
Q ss_pred ccchhhhhCCCCCchhhHHHHHHhhh----cCCCeEEEEecCch--hHhhhhhcC----hHHHhcc----ceEEecCCC
Q 002012 369 DELHTIIGAGNQSGAMDASNMLKPML----GRGELRCIGATTLN--EYRNYIEKD----PALERRF----QQVFCDQPS 433 (982)
Q Consensus 369 DEi~~l~~~~~~~~~~~~~~~L~~~l----e~g~i~vI~at~~~--~~~~~~~~d----~al~rRf----~~i~i~~Ps 433 (982)
||++..... .+..+.|.+++ +++. +|.|||.+ ++.+.+.-| .++.+|+ ..|.+.-.|
T Consensus 171 Ddlg~~~~~------~~~~~~lf~li~~r~~~~s--~iiTsn~~~~~w~~~~~~d~~~~~ai~dRl~~~~~~i~~~g~s 241 (259)
T PRK09183 171 DEIGYLPFS------QEEANLFFQVIAKRYEKGS--MILTSNLPFGQWDQTFAGDAALTSAMLDRLLHHSHVVQIKGES 241 (259)
T ss_pred cccccCCCC------hHHHHHHHHHHHHHHhcCc--EEEecCCCHHHHHHHhcCchhHHHHHHHHHhcceEEEeecCCC
Confidence 999875321 23334455555 3443 56677664 333333223 3566664 245554443
No 499
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.04 E-value=6.4e-06 Score=76.72 Aligned_cols=94 Identities=26% Similarity=0.459 Sum_probs=59.4
Q ss_pred EEeecCCCCchHHHHHHHHHHhcCCC-----CceEEEeccccccccccccccCCCCCccccccCCchhHHHhhCCCeEEE
Q 002012 696 FMFMGPTGVGKTELGKALADFLFNTE-----NALVRIDMSEYMEKHSVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVL 770 (982)
Q Consensus 696 lLf~Gp~GtGKT~lA~~la~~l~~~~-----~~~v~i~~s~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~~~~~Vl~ 770 (982)
+.|+||||+|||++|+.|++.+...- ..+...+... ++ -.||.| ..|++
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~~~~~~--------~~---w~gY~~---------------q~vvi 54 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYTRNPGD--------KF---WDGYQG---------------QPVVI 54 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEeCCCcc--------ch---hhccCC---------------CcEEE
Confidence 46899999999999999999883210 1111100000 00 012221 23999
Q ss_pred EccccccCHH----HHHHHHHhhhcCceecCC----CcEEecccEEEEEecCC
Q 002012 771 FDEIEKAHQD----VFNILLQLLDDGRITDSQ----GRTVSFTNCVVIMTSNI 815 (982)
Q Consensus 771 lDEidkl~~~----~~~~Ll~~le~g~~~d~~----g~~~~~~~~iiI~tsn~ 815 (982)
+||+...... ....|+++++...+.-+. .+...|.--+||+|||.
T Consensus 55 ~DD~~~~~~~~~~~~~~~l~~l~s~~~~~~~~a~~~~K~~~~~s~~vi~tsN~ 107 (107)
T PF00910_consen 55 IDDFGQDNDGYNYSDESELIRLISSNPFQPNMADLEDKGTPFNSKLVIITSNF 107 (107)
T ss_pred EeecCccccccchHHHHHHHHHHhcCCcccccccHhhCCCccCCCEEEEcCCC
Confidence 9999888754 788899999887665432 22245666788899884
No 500
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.04 E-value=0.00018 Score=85.10 Aligned_cols=69 Identities=16% Similarity=0.228 Sum_probs=43.8
Q ss_pred hcChHHHhccc-cccccCCCChhHHHHHHHHHHHHHHHHHHhCCCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHH
Q 002012 849 TFRPEFLNRID-EYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQ 924 (982)
Q Consensus 849 ~f~p~ll~Rid-~ii~F~pl~~~~l~~il~~~l~~~~~~~~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~ 924 (982)
.|++++++... ..|.|+|+...-+.+.+...+..-....... ....-..++++.|+..+ -| +|+.+|..
T Consensus 194 L~~~~il~~~~i~~I~FNpIa~T~mkKaL~rI~~~E~~~~~~~-~~~p~~~~~l~~I~~~s----~G--DIRsAIn~ 263 (519)
T PF03215_consen 194 LFPKEILNHPGITRIKFNPIAPTFMKKALKRILKKEARSSSGK-NKVPDKQSVLDSIAESS----NG--DIRSAINN 263 (519)
T ss_pred ccCHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHHhhhhcCC-ccCCChHHHHHHHHHhc----Cc--hHHHHHHH
Confidence 47888876543 3799999999988888888877533221111 11222345688887642 13 67777776
Done!