Query 002012
Match_columns 982
No_of_seqs 597 out of 4969
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 08:38:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002012.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002012hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qvr_A CLPB protein; coiled co 100.0 6E-104 2E-108 993.6 82.5 850 92-970 1-850 (854)
2 3pxi_A Negative regulator of g 100.0 3.7E-96 1E-100 914.0 66.1 751 92-971 1-756 (758)
3 1r6b_X CLPA protein; AAA+, N-t 100.0 1.1E-90 3.8E-95 866.3 67.8 735 97-973 2-751 (758)
4 3pxg_A Negative regulator of g 100.0 1.6E-61 5.4E-66 567.9 40.5 441 92-556 1-446 (468)
5 3cf2_A TER ATPase, transitiona 100.0 1.2E-37 4.1E-42 378.9 20.0 458 266-934 201-703 (806)
6 4fcw_A Chaperone protein CLPB; 100.0 1.6E-34 5.5E-39 321.6 31.3 306 650-970 4-309 (311)
7 1ypw_A Transitional endoplasmi 100.0 2.3E-30 8E-35 321.3 12.9 457 264-931 199-700 (806)
8 3hws_A ATP-dependent CLP prote 99.9 2.8E-26 9.6E-31 260.8 13.1 279 655-951 7-341 (363)
9 3fh2_A Probable ATP-dependent 99.9 3E-24 1E-28 210.9 16.0 144 91-236 1-145 (146)
10 1khy_A CLPB protein; alpha hel 99.9 2.9E-24 9.8E-29 211.9 14.9 147 92-238 1-147 (148)
11 1um8_A ATP-dependent CLP prote 99.9 7.3E-24 2.5E-28 242.1 15.9 280 654-951 12-357 (376)
12 3fes_A ATP-dependent CLP endop 99.9 9.4E-24 3.2E-28 207.1 13.9 141 92-235 3-144 (145)
13 2y1q_A CLPC N-domain, negative 99.9 1.3E-23 4.3E-28 207.7 14.3 144 92-238 1-145 (150)
14 1g41_A Heat shock protein HSLU 99.9 1.6E-23 5.6E-28 239.2 15.3 160 759-950 243-424 (444)
15 1jbk_A CLPB protein; beta barr 99.9 6.9E-23 2.4E-27 209.7 15.4 193 249-441 2-194 (195)
16 4b4t_J 26S protease regulatory 99.9 1.1E-21 3.8E-26 220.3 24.3 201 264-493 143-370 (405)
17 4b4t_I 26S protease regulatory 99.9 2.8E-21 9.6E-26 217.2 22.2 202 264-494 177-405 (437)
18 2p65_A Hypothetical protein PF 99.9 4.7E-22 1.6E-26 202.7 14.1 184 250-433 3-187 (187)
19 4b4t_H 26S protease regulatory 99.9 3.5E-21 1.2E-25 218.6 21.7 202 264-493 204-431 (467)
20 4b4t_M 26S protease regulatory 99.9 2E-21 6.8E-26 221.7 19.7 202 264-493 176-403 (434)
21 1ojl_A Transcriptional regulat 99.9 2.2E-21 7.6E-26 214.4 19.4 227 663-926 2-232 (304)
22 1ofh_A ATP-dependent HSL prote 99.9 1.3E-21 4.4E-26 217.0 16.8 251 655-951 7-291 (310)
23 2bjv_A PSP operon transcriptio 99.9 8E-21 2.7E-25 206.1 20.5 227 662-926 5-237 (265)
24 4b4t_L 26S protease subunit RP 99.9 5.3E-21 1.8E-25 218.4 19.8 202 264-493 176-403 (437)
25 3zri_A CLPB protein, CLPV; cha 99.9 2.1E-21 7.3E-26 194.1 13.5 155 74-235 6-164 (171)
26 4b4t_K 26S protease regulatory 99.9 1.6E-20 5.6E-25 214.0 21.5 201 264-493 167-395 (428)
27 3m6a_A ATP-dependent protease 99.8 1.3E-20 4.4E-25 224.4 17.9 262 628-936 47-321 (543)
28 1ny5_A Transcriptional regulat 99.8 1.3E-19 4.4E-24 207.0 23.9 228 663-927 137-368 (387)
29 3pxi_A Negative regulator of g 99.8 1.1E-19 3.8E-24 225.9 24.4 179 269-469 491-704 (758)
30 1k6k_A ATP-dependent CLP prote 99.8 1.8E-20 6.2E-25 183.4 12.3 134 97-232 2-139 (143)
31 3eie_A Vacuolar protein sortin 99.8 8.6E-20 2.9E-24 203.7 19.4 205 260-491 9-234 (322)
32 3dzd_A Transcriptional regulat 99.8 1.7E-19 5.8E-24 204.4 19.6 226 663-926 129-358 (368)
33 1r6b_X CLPA protein; AAA+, N-t 99.8 1.5E-18 5.2E-23 216.0 30.0 179 269-468 458-694 (758)
34 2qp9_X Vacuolar protein sortin 99.8 3E-19 1E-23 201.8 21.4 208 258-492 40-268 (355)
35 1xwi_A SKD1 protein; VPS4B, AA 99.8 5.3E-19 1.8E-23 197.0 22.2 202 264-491 7-229 (322)
36 3vfd_A Spastin; ATPase, microt 99.8 3.9E-19 1.3E-23 203.8 20.2 207 257-490 103-331 (389)
37 3d8b_A Fidgetin-like protein 1 99.8 1.2E-18 4.1E-23 197.2 23.0 209 255-490 70-300 (357)
38 3syl_A Protein CBBX; photosynt 99.8 5.8E-19 2E-23 195.7 18.9 222 652-935 20-268 (309)
39 3pvs_A Replication-associated 99.8 6E-19 2E-23 204.5 17.7 201 257-493 14-223 (447)
40 3b9p_A CG5977-PA, isoform A; A 99.8 4.8E-18 1.6E-22 187.3 21.8 206 258-490 10-238 (297)
41 3h4m_A Proteasome-activating n 99.8 2.9E-17 9.9E-22 179.8 24.9 203 265-495 13-241 (285)
42 2zan_A Vacuolar protein sortin 99.8 4.6E-18 1.6E-22 197.8 18.9 204 262-491 127-351 (444)
43 4b4t_J 26S protease regulatory 99.8 3.2E-18 1.1E-22 192.2 16.7 200 660-930 145-370 (405)
44 4akg_A Glutathione S-transfera 99.8 6.4E-17 2.2E-21 218.1 30.0 458 289-882 1266-1791(2695)
45 3cf2_A TER ATPase, transitiona 99.8 7.8E-19 2.7E-23 214.0 10.0 199 266-492 474-698 (806)
46 3syl_A Protein CBBX; photosynt 99.8 3E-17 1E-21 181.9 21.2 209 270-491 32-261 (309)
47 2qz4_A Paraplegin; AAA+, SPG7, 99.8 4.9E-17 1.7E-21 175.5 22.4 201 266-493 3-230 (262)
48 3pfi_A Holliday junction ATP-d 99.7 2.9E-17 9.9E-22 184.5 21.0 195 255-493 15-235 (338)
49 3cf0_A Transitional endoplasmi 99.7 8.9E-18 3E-22 185.5 15.3 201 264-492 10-236 (301)
50 4b4t_I 26S protease regulatory 99.7 1.2E-17 4E-22 187.9 15.4 199 661-930 180-404 (437)
51 3hu3_A Transitional endoplasmi 99.7 2.7E-17 9.3E-22 192.4 19.1 204 262-493 197-423 (489)
52 3u61_B DNA polymerase accessor 99.7 3.5E-17 1.2E-21 182.7 17.3 197 256-489 13-220 (324)
53 4b4t_M 26S protease regulatory 99.7 1.5E-17 5E-22 189.8 14.2 199 661-930 179-403 (434)
54 4b4t_H 26S protease regulatory 99.7 3.2E-17 1.1E-21 186.2 16.5 199 661-930 207-431 (467)
55 3pfi_A Holliday junction ATP-d 99.7 1.3E-16 4.6E-21 179.1 21.3 196 662-926 28-231 (338)
56 1lv7_A FTSH; alpha/beta domain 99.7 7.8E-17 2.7E-21 173.8 18.2 205 261-494 4-234 (257)
57 4b4t_L 26S protease subunit RP 99.7 3.8E-17 1.3E-21 186.5 16.3 199 661-930 179-403 (437)
58 2chg_A Replication factor C sm 99.7 2.8E-16 9.5E-21 164.3 21.7 199 257-491 5-210 (226)
59 4b4t_K 26S protease regulatory 99.7 4.6E-17 1.6E-21 185.7 15.7 200 660-930 169-395 (428)
60 2ce7_A Cell division protein F 99.7 1.5E-16 5.1E-21 184.5 20.2 199 266-493 13-237 (476)
61 3eie_A Vacuolar protein sortin 99.7 1.3E-16 4.6E-21 177.8 18.7 209 662-935 17-241 (322)
62 1xwi_A SKD1 protein; VPS4B, AA 99.7 5.9E-16 2E-20 172.4 21.7 210 662-935 11-236 (322)
63 1iqp_A RFCS; clamp loader, ext 99.7 1.7E-16 5.9E-21 176.9 17.4 202 252-489 8-216 (327)
64 2qp9_X Vacuolar protein sortin 99.7 3.1E-16 1.1E-20 177.1 19.3 210 661-935 49-274 (355)
65 1sxj_D Activator 1 41 kDa subu 99.7 2.1E-16 7E-21 178.4 17.4 203 255-492 23-242 (353)
66 2chq_A Replication factor C sm 99.7 1.4E-16 4.8E-21 177.0 14.7 201 257-489 5-208 (319)
67 1ofh_A ATP-dependent HSL prote 99.7 7.8E-16 2.7E-20 170.3 20.0 212 270-493 16-274 (310)
68 1sxj_B Activator 1 37 kDa subu 99.7 6.4E-16 2.2E-20 171.9 17.9 197 257-489 9-213 (323)
69 3pxg_A Negative regulator of g 99.7 2.6E-15 8.8E-20 175.8 23.4 172 663-907 180-360 (468)
70 1hqc_A RUVB; extended AAA-ATPa 99.7 5.3E-16 1.8E-20 173.0 16.1 187 261-491 4-217 (324)
71 3uk6_A RUVB-like 2; hexameric 99.7 8.6E-16 2.9E-20 174.5 18.0 210 258-495 32-313 (368)
72 2r44_A Uncharacterized protein 99.7 3.5E-16 1.2E-20 175.2 13.1 212 255-497 13-282 (331)
73 1njg_A DNA polymerase III subu 99.6 3.9E-15 1.3E-19 157.6 20.0 203 257-490 11-233 (250)
74 2zan_A Vacuolar protein sortin 99.6 2E-15 6.9E-20 175.5 19.1 212 662-935 133-358 (444)
75 1hqc_A RUVB; extended AAA-ATPa 99.6 2.1E-15 7.2E-20 168.1 18.4 194 662-924 11-213 (324)
76 1jr3_A DNA polymerase III subu 99.6 5.5E-15 1.9E-19 168.0 22.0 204 257-491 4-227 (373)
77 3vkg_A Dynein heavy chain, cyt 99.6 3.1E-15 1.1E-19 202.3 22.8 459 289-882 1303-1828(3245)
78 1sxj_E Activator 1 40 kDa subu 99.6 1.9E-15 6.5E-20 170.7 16.9 206 258-492 3-244 (354)
79 3cf0_A Transitional endoplasmi 99.6 2.3E-15 7.7E-20 166.2 17.1 205 662-935 14-242 (301)
80 2r62_A Cell division protease 99.6 3.9E-17 1.3E-21 177.2 2.5 202 264-493 6-234 (268)
81 1sxj_C Activator 1 40 kDa subu 99.6 3.9E-15 1.3E-19 167.3 18.9 197 256-488 12-215 (340)
82 3n70_A Transport activator; si 99.6 1.1E-15 3.6E-20 149.8 12.5 143 664-868 2-145 (145)
83 2x8a_A Nuclear valosin-contain 99.6 3.3E-15 1.1E-19 162.2 17.2 203 266-492 7-233 (274)
84 1sxj_A Activator 1 95 kDa subu 99.6 4.6E-16 1.6E-20 184.5 11.4 202 255-489 25-256 (516)
85 3d8b_A Fidgetin-like protein 1 99.6 4.9E-15 1.7E-19 167.5 18.7 205 662-930 83-303 (357)
86 3vfd_A Spastin; ATPase, microt 99.6 4.5E-15 1.5E-19 170.0 18.0 205 662-930 114-334 (389)
87 3pvs_A Replication-associated 99.6 1.3E-15 4.4E-20 176.5 13.1 188 662-926 25-219 (447)
88 3t15_A Ribulose bisphosphate c 99.6 2.8E-15 9.4E-20 164.7 14.9 141 288-446 34-199 (293)
89 4akg_A Glutathione S-transfera 99.6 5E-14 1.7E-18 190.2 29.5 123 290-441 645-789 (2695)
90 3u61_B DNA polymerase accessor 99.6 4.3E-15 1.5E-19 165.8 16.0 189 662-925 25-219 (324)
91 3b9p_A CG5977-PA, isoform A; A 99.6 1.1E-14 3.7E-19 160.4 18.5 206 662-930 20-241 (297)
92 1g8p_A Magnesium-chelatase 38 99.6 6.7E-15 2.3E-19 165.8 16.7 222 662-925 23-298 (350)
93 3te6_A Regulatory protein SIR3 99.6 7E-15 2.4E-19 161.5 16.1 212 271-493 22-287 (318)
94 2qz4_A Paraplegin; AAA+, SPG7, 99.6 1.4E-14 4.9E-19 156.1 17.5 201 662-928 5-228 (262)
95 3t15_A Ribulose bisphosphate c 99.6 8E-15 2.7E-19 161.0 15.3 163 669-881 13-199 (293)
96 3uk6_A RUVB-like 2; hexameric 99.6 1E-14 3.5E-19 165.7 16.3 218 662-928 43-309 (368)
97 2dhr_A FTSH; AAA+ protein, hex 99.6 6.1E-15 2.1E-19 172.0 14.0 201 264-493 26-252 (499)
98 4fcw_A Chaperone protein CLPB; 99.6 3.3E-14 1.1E-18 157.4 18.9 200 270-490 18-276 (311)
99 3nbx_X ATPase RAVA; AAA+ ATPas 99.6 1.7E-14 5.8E-19 168.5 17.1 237 651-938 10-271 (500)
100 1in4_A RUVB, holliday junction 99.6 6.4E-14 2.2E-18 156.9 20.9 193 258-494 14-232 (334)
101 2c9o_A RUVB-like 1; hexameric 99.6 3.8E-14 1.3E-18 165.5 19.8 113 365-496 298-421 (456)
102 2r44_A Uncharacterized protein 99.6 3.1E-14 1.1E-18 159.3 18.2 203 653-907 17-238 (331)
103 1ixz_A ATP-dependent metallopr 99.6 3.2E-14 1.1E-18 152.9 17.6 201 264-493 11-237 (254)
104 1lv7_A FTSH; alpha/beta domain 99.6 2.8E-14 9.6E-19 153.6 16.5 202 662-929 11-232 (257)
105 2bjv_A PSP operon transcriptio 99.6 3.6E-14 1.2E-18 153.5 17.0 185 267-467 4-220 (265)
106 3h4m_A Proteasome-activating n 99.6 3.5E-14 1.2E-18 155.3 17.1 203 662-928 16-237 (285)
107 2v1u_A Cell division control p 99.6 1.2E-13 4.2E-18 157.3 21.5 215 268-493 18-257 (387)
108 3hws_A ATP-dependent CLP prote 99.6 5.6E-14 1.9E-18 159.3 18.3 207 271-492 17-322 (363)
109 2chg_A Replication factor C sm 99.6 1E-13 3.4E-18 144.8 18.8 185 662-925 16-207 (226)
110 1um8_A ATP-dependent CLP prote 99.5 1.1E-13 3.9E-18 157.6 20.6 207 270-491 22-338 (376)
111 2ce7_A Cell division protein F 99.5 6.1E-14 2.1E-18 162.6 18.6 199 662-928 15-235 (476)
112 1ojl_A Transcriptional regulat 99.5 2.6E-14 9E-19 157.7 14.6 198 269-491 2-234 (304)
113 1iy2_A ATP-dependent metallopr 99.5 1.1E-13 3.7E-18 150.9 18.6 201 264-493 35-261 (278)
114 3bos_A Putative DNA replicatio 99.5 4.7E-14 1.6E-18 149.6 15.3 201 259-492 17-224 (242)
115 2chq_A Replication factor C sm 99.5 5.3E-14 1.8E-18 156.1 16.2 184 662-925 16-207 (319)
116 3m6a_A ATP-dependent protease 99.5 2.2E-14 7.6E-19 170.6 13.9 177 270-467 82-294 (543)
117 3hu3_A Transitional endoplasmi 99.5 4.7E-14 1.6E-18 165.0 14.6 203 662-931 203-424 (489)
118 1ypw_A Transitional endoplasmi 99.5 2.3E-15 7.9E-20 186.9 3.3 199 266-492 474-698 (806)
119 1d2n_A N-ethylmaleimide-sensit 99.5 9.8E-14 3.3E-18 150.7 15.7 177 269-471 33-229 (272)
120 1iqp_A RFCS; clamp loader, ext 99.5 1.3E-13 4.3E-18 153.6 17.0 184 662-924 24-214 (327)
121 1sxj_D Activator 1 41 kDa subu 99.5 8.1E-14 2.8E-18 157.1 15.4 199 662-925 36-238 (353)
122 2qby_B CDC6 homolog 3, cell di 99.5 4.8E-13 1.6E-17 152.5 21.6 217 259-493 13-253 (384)
123 3co5_A Putative two-component 99.5 6.6E-15 2.3E-19 143.7 5.2 138 663-867 4-142 (143)
124 3vkg_A Dynein heavy chain, cyt 99.5 1.6E-12 5.3E-17 176.3 29.6 132 279-441 595-749 (3245)
125 2r62_A Cell division protease 99.5 1.7E-14 5.8E-19 156.3 8.4 197 662-926 10-230 (268)
126 1l8q_A Chromosomal replication 99.5 3.3E-13 1.1E-17 150.4 18.4 199 266-491 8-214 (324)
127 3k1j_A LON protease, ATP-depen 99.5 9.6E-14 3.3E-18 167.7 14.8 223 662-925 40-351 (604)
128 2qby_A CDC6 homolog 1, cell di 99.5 6.5E-13 2.2E-17 151.2 20.7 211 268-493 19-253 (386)
129 1d2n_A N-ethylmaleimide-sensit 99.5 3E-14 1E-18 154.8 8.9 197 661-925 31-245 (272)
130 1g8p_A Magnesium-chelatase 38 99.5 5E-14 1.7E-18 158.6 10.9 214 264-496 19-306 (350)
131 1fnn_A CDC6P, cell division co 99.5 1E-12 3.5E-17 150.0 21.3 207 269-493 17-255 (389)
132 1sxj_B Activator 1 37 kDa subu 99.5 3.9E-13 1.3E-17 149.3 16.9 185 662-926 20-213 (323)
133 3f9v_A Minichromosome maintena 99.5 1.9E-14 6.6E-19 172.6 4.8 236 654-924 286-562 (595)
134 2c9o_A RUVB-like 1; hexameric 99.5 9.5E-13 3.2E-17 153.7 18.6 102 767-908 297-398 (456)
135 1jr3_A DNA polymerase III subu 99.4 2E-12 7E-17 146.7 20.3 200 662-925 15-224 (373)
136 1qvr_A CLPB protein; coiled co 99.4 1.3E-12 4.4E-17 164.2 20.3 183 269-469 558-799 (854)
137 1l8q_A Chromosomal replication 99.4 9.5E-13 3.2E-17 146.8 16.9 172 695-928 39-214 (324)
138 3te6_A Regulatory protein SIR3 99.4 1.2E-13 4.1E-18 151.7 9.4 243 663-950 20-306 (318)
139 2z4s_A Chromosomal replication 99.4 5.3E-13 1.8E-17 154.8 15.3 207 267-495 103-316 (440)
140 1njg_A DNA polymerase III subu 99.4 1.8E-12 6.3E-17 136.9 18.2 196 662-924 22-230 (250)
141 2dhr_A FTSH; AAA+ protein, hex 99.4 4.5E-13 1.5E-17 156.3 14.0 196 662-927 30-249 (499)
142 2qby_B CDC6 homolog 3, cell di 99.4 8E-13 2.8E-17 150.7 15.0 209 663-924 20-247 (384)
143 3bos_A Putative DNA replicatio 99.4 1.8E-12 6.1E-17 137.3 16.3 168 694-929 53-224 (242)
144 1a5t_A Delta prime, HOLB; zinc 99.4 2E-12 6.8E-17 144.7 17.4 177 665-907 4-193 (334)
145 1sxj_C Activator 1 40 kDa subu 99.4 2.1E-12 7.2E-17 144.9 17.1 169 662-907 24-200 (340)
146 1fnn_A CDC6P, cell division co 99.4 4.4E-12 1.5E-16 144.7 19.8 220 663-927 17-252 (389)
147 1a5t_A Delta prime, HOLB; zinc 99.4 5.1E-12 1.7E-16 141.4 18.2 182 274-488 7-208 (334)
148 1sxj_E Activator 1 40 kDa subu 99.4 1.3E-12 4.6E-17 147.3 13.6 196 663-924 14-239 (354)
149 2gno_A DNA polymerase III, gam 99.4 2.7E-12 9.3E-17 141.1 14.5 145 667-880 1-152 (305)
150 2x8a_A Nuclear valosin-contain 99.4 4.3E-12 1.5E-16 137.7 15.3 207 661-934 8-238 (274)
151 3n70_A Transport activator; si 99.4 9.7E-13 3.3E-17 128.6 9.1 136 270-433 2-143 (145)
152 2v1u_A Cell division control p 99.4 1.9E-12 6.5E-17 147.4 12.3 218 663-926 19-253 (387)
153 1ixz_A ATP-dependent metallopr 99.4 6.5E-12 2.2E-16 134.8 15.7 200 662-929 15-236 (254)
154 2z4s_A Chromosomal replication 99.3 6E-12 2E-16 146.0 15.1 176 695-929 132-313 (440)
155 1in4_A RUVB, holliday junction 99.3 5.1E-11 1.8E-15 133.2 21.9 194 663-925 25-226 (334)
156 1iy2_A ATP-dependent metallopr 99.3 1.1E-11 3.8E-16 134.9 15.0 199 662-928 39-259 (278)
157 1sxj_A Activator 1 95 kDa subu 99.3 1.3E-11 4.6E-16 146.2 16.7 201 662-924 38-254 (516)
158 3co5_A Putative two-component 99.3 4.8E-13 1.6E-17 130.5 3.4 131 270-433 5-141 (143)
159 3nbx_X ATPase RAVA; AAA+ ATPas 99.3 4.1E-11 1.4E-15 139.9 19.8 205 270-497 23-271 (500)
160 3k1j_A LON protease, ATP-depen 99.3 2E-11 7E-16 147.4 17.5 215 261-496 33-359 (604)
161 1jbk_A CLPB protein; beta barr 99.3 1.8E-12 6.1E-17 131.8 5.6 158 660-876 19-194 (195)
162 2gno_A DNA polymerase III, gam 99.2 6.8E-11 2.3E-15 130.0 14.2 147 273-445 1-152 (305)
163 1w5s_A Origin recognition comp 99.2 3.8E-10 1.3E-14 129.6 20.6 217 269-492 22-273 (412)
164 2qby_A CDC6 homolog 1, cell di 99.2 5.6E-11 1.9E-15 135.1 13.2 213 663-925 20-248 (386)
165 3f8t_A Predicted ATPase involv 99.2 7.1E-11 2.4E-15 133.7 13.3 211 654-906 205-425 (506)
166 2p65_A Hypothetical protein PF 99.2 2.4E-11 8.1E-16 123.0 7.0 151 659-868 18-187 (187)
167 3f9v_A Minichromosome maintena 99.2 9.1E-12 3.1E-16 149.4 3.9 159 269-447 295-492 (595)
168 1ny5_A Transcriptional regulat 99.1 7.3E-09 2.5E-13 117.9 22.9 181 268-468 136-351 (387)
169 3dzd_A Transcriptional regulat 99.1 3.4E-09 1.2E-13 119.8 19.2 179 269-468 129-342 (368)
170 2qen_A Walker-type ATPase; unk 99.0 9E-09 3.1E-13 115.2 17.9 183 269-471 12-238 (350)
171 2fna_A Conserved hypothetical 98.9 1.3E-08 4.4E-13 114.1 16.7 178 269-470 13-241 (357)
172 1g41_A Heat shock protein HSLU 98.8 1.4E-09 4.7E-14 124.4 5.5 121 655-790 7-140 (444)
173 1w5s_A Origin recognition comp 98.8 1.2E-08 4E-13 117.2 12.9 218 663-924 22-268 (412)
174 3f8t_A Predicted ATPase involv 98.7 7.4E-08 2.5E-12 109.2 14.6 204 270-498 214-469 (506)
175 3cmw_A Protein RECA, recombina 98.7 6.7E-08 2.3E-12 125.8 14.7 84 696-780 1085-1175(1706)
176 2w58_A DNAI, primosome compone 98.7 3.6E-08 1.2E-12 101.4 9.6 100 261-374 17-127 (202)
177 3ec2_A DNA replication protein 98.7 2.6E-08 9E-13 100.6 8.0 103 695-818 40-145 (180)
178 2w58_A DNAI, primosome compone 98.6 1.9E-08 6.5E-13 103.6 5.1 108 695-823 56-166 (202)
179 3fh2_A Probable ATP-dependent 98.6 6.7E-08 2.3E-12 94.1 8.3 65 96-160 81-145 (146)
180 3fes_A ATP-dependent CLP endop 98.6 4.6E-08 1.6E-12 95.2 6.8 64 96-159 81-144 (145)
181 3ec2_A DNA replication protein 98.6 3E-08 1E-12 100.2 4.5 131 262-409 3-144 (180)
182 3cmu_A Protein RECA, recombina 98.6 1E-07 3.5E-12 125.3 10.4 83 695-778 1429-1518(2050)
183 2kjq_A DNAA-related protein; s 98.5 9.5E-08 3.3E-12 93.4 7.2 106 289-425 35-140 (149)
184 2qgz_A Helicase loader, putati 98.5 8.8E-08 3E-12 105.4 5.5 100 264-374 119-226 (308)
185 2kjq_A DNAA-related protein; s 98.5 1.6E-07 5.4E-12 91.8 6.4 89 695-817 38-126 (149)
186 2y1q_A CLPC N-domain, negative 98.5 3E-07 1E-11 89.8 8.4 66 96-161 79-144 (150)
187 1jr3_D DNA polymerase III, del 98.4 9E-07 3.1E-11 99.0 13.3 162 695-925 20-188 (343)
188 1jr3_D DNA polymerase III, del 98.4 8.6E-07 2.9E-11 99.2 12.8 169 288-491 16-191 (343)
189 2qgz_A Helicase loader, putati 98.3 4.9E-07 1.7E-11 99.4 7.0 108 694-823 153-265 (308)
190 1k6k_A ATP-dependent CLP prote 98.3 1.1E-06 3.7E-11 85.2 8.1 61 96-156 79-139 (143)
191 1tue_A Replication protein E1; 98.3 1.2E-06 3.9E-11 88.9 7.9 120 278-433 45-180 (212)
192 3zri_A CLPB protein, CLPV; cha 98.2 3.7E-06 1.3E-10 83.6 10.3 109 173-283 24-134 (171)
193 2r2a_A Uncharacterized protein 98.2 3.1E-06 1E-10 86.7 8.9 131 292-433 7-154 (199)
194 1khy_A CLPB protein; alpha hel 98.2 3.1E-06 1.1E-10 82.3 8.2 62 96-158 82-143 (148)
195 2qen_A Walker-type ATPase; unk 98.2 9.6E-06 3.3E-10 90.3 12.9 183 663-906 12-233 (350)
196 1ye8_A Protein THEP1, hypothet 98.1 1.5E-05 5.2E-10 80.1 12.1 68 361-438 98-169 (178)
197 1u0j_A DNA replication protein 98.1 9.7E-06 3.3E-10 86.0 10.4 132 695-877 106-248 (267)
198 2vhj_A Ntpase P4, P4; non- hyd 98.1 4.1E-06 1.4E-10 91.1 6.9 106 291-409 124-237 (331)
199 1tue_A Replication protein E1; 98.0 5E-06 1.7E-10 84.3 6.9 97 695-818 60-159 (212)
200 1u0j_A DNA replication protein 98.0 1.4E-05 4.8E-10 84.8 10.4 124 281-442 93-248 (267)
201 2fna_A Conserved hypothetical 98.0 1E-05 3.4E-10 90.3 9.1 168 663-881 13-223 (357)
202 1z6t_A APAF-1, apoptotic prote 97.9 8.8E-05 3E-09 89.2 16.0 175 265-470 120-319 (591)
203 3upu_A ATP-dependent DNA helic 97.9 2.5E-05 8.5E-10 90.9 9.6 62 255-317 10-72 (459)
204 2orw_A Thymidine kinase; TMTK, 97.8 3.1E-05 1.1E-09 78.2 7.1 94 696-791 6-102 (184)
205 2orw_A Thymidine kinase; TMTK, 97.6 2.8E-05 9.5E-10 78.6 3.5 118 292-427 5-133 (184)
206 2r2a_A Uncharacterized protein 97.5 0.00014 4.8E-09 74.2 8.0 81 695-777 7-99 (199)
207 1ye8_A Protein THEP1, hypothet 97.4 0.00033 1.1E-08 70.2 9.2 23 695-717 2-24 (178)
208 3e1s_A Exodeoxyribonuclease V, 97.4 0.0042 1.4E-07 73.8 18.8 136 176-331 72-238 (574)
209 2a5y_B CED-4; apoptosis; HET: 97.3 0.0018 6.3E-08 76.9 15.5 148 272-444 131-305 (549)
210 2r8r_A Sensor protein; KDPD, P 97.3 0.0034 1.2E-07 64.7 15.3 138 288-440 4-172 (228)
211 3sfz_A APAF-1, apoptotic pepti 97.3 0.001 3.5E-08 87.0 14.4 157 263-445 118-299 (1249)
212 2vhj_A Ntpase P4, P4; non- hyd 97.3 0.00035 1.2E-08 75.9 8.2 72 695-779 125-196 (331)
213 2b8t_A Thymidine kinase; deoxy 97.3 0.0006 2.1E-08 70.7 9.5 97 695-791 14-115 (223)
214 1vt4_I APAF-1 related killer D 97.3 0.0015 5.2E-08 80.9 14.2 42 271-312 130-172 (1221)
215 2r8r_A Sensor protein; KDPD, P 97.2 0.00056 1.9E-08 70.6 7.8 152 693-874 6-171 (228)
216 3upu_A ATP-dependent DNA helic 97.2 0.0007 2.4E-08 78.6 9.5 113 667-791 29-154 (459)
217 3cmw_A Protein RECA, recombina 97.2 0.00053 1.8E-08 89.8 8.8 78 292-377 1084-1175(1706)
218 2w0m_A SSO2452; RECA, SSPF, un 97.0 0.0016 5.6E-08 67.5 8.7 110 290-408 23-168 (235)
219 3cmu_A Protein RECA, recombina 97.0 0.0016 5.5E-08 86.2 10.4 81 288-376 1425-1519(2050)
220 2b8t_A Thymidine kinase; deoxy 97.0 0.0016 5.6E-08 67.4 8.5 104 292-411 14-129 (223)
221 1xx6_A Thymidine kinase; NESG, 96.8 0.0017 5.7E-08 65.7 6.8 94 696-791 11-107 (191)
222 2cvh_A DNA repair and recombin 96.8 0.0016 5.4E-08 67.1 6.8 34 291-334 21-54 (220)
223 1n0w_A DNA repair protein RAD5 96.7 0.0051 1.8E-07 64.2 10.4 25 290-314 24-48 (243)
224 2j9r_A Thymidine kinase; TK1, 96.7 0.0074 2.5E-07 61.7 10.6 94 696-791 31-127 (214)
225 2iut_A DNA translocase FTSK; n 96.7 0.017 6E-07 67.5 15.1 142 290-441 214-419 (574)
226 3trf_A Shikimate kinase, SK; a 96.6 0.00086 3E-08 67.2 3.4 33 290-332 5-37 (185)
227 3jvv_A Twitching mobility prot 96.6 0.005 1.7E-07 68.6 9.7 93 694-792 124-221 (356)
228 1xp8_A RECA protein, recombina 96.6 0.006 2.1E-07 68.2 10.1 79 290-376 74-166 (366)
229 3dm5_A SRP54, signal recogniti 96.6 0.039 1.3E-06 62.8 16.6 77 290-374 100-194 (443)
230 3crm_A TRNA delta(2)-isopenten 96.5 0.00093 3.2E-08 73.1 3.1 100 291-408 6-105 (323)
231 1qhx_A CPT, protein (chloramph 96.5 0.0014 4.8E-08 65.2 4.0 34 291-334 4-37 (178)
232 3dm5_A SRP54, signal recogniti 96.5 0.022 7.5E-07 64.9 14.3 96 693-788 100-207 (443)
233 3e1s_A Exodeoxyribonuclease V, 96.5 0.0041 1.4E-07 73.9 8.6 90 695-791 206-305 (574)
234 4a74_A DNA repair and recombin 96.5 0.0088 3E-07 61.8 9.9 24 291-314 26-49 (231)
235 3vaa_A Shikimate kinase, SK; s 96.4 0.0016 5.6E-08 66.2 3.6 34 289-332 24-57 (199)
236 1u94_A RECA protein, recombina 96.3 0.0051 1.7E-07 68.5 7.4 81 289-376 62-155 (356)
237 3iij_A Coilin-interacting nucl 96.3 0.0023 7.8E-08 63.8 4.1 26 289-314 10-35 (180)
238 2w0m_A SSO2452; RECA, SSPF, un 96.3 0.0068 2.3E-07 62.7 7.6 36 695-730 25-60 (235)
239 1via_A Shikimate kinase; struc 96.2 0.0023 8E-08 63.5 3.7 23 292-314 6-28 (175)
240 1y63_A LMAJ004144AAA protein; 96.2 0.002 6.7E-08 64.7 3.2 25 289-313 9-33 (184)
241 3kb2_A SPBC2 prophage-derived 96.2 0.0025 8.7E-08 62.7 3.9 23 292-314 3-25 (173)
242 3exa_A TRNA delta(2)-isopenten 96.2 0.017 5.7E-07 62.5 10.5 97 292-408 5-103 (322)
243 2zr9_A Protein RECA, recombina 96.2 0.011 3.6E-07 65.8 9.3 78 290-375 61-152 (349)
244 1zuh_A Shikimate kinase; alpha 96.2 0.0022 7.6E-08 63.1 3.3 33 290-332 7-39 (168)
245 2dr3_A UPF0273 protein PH0284; 96.2 0.012 4.2E-07 61.4 9.2 27 289-315 22-48 (247)
246 2i3b_A HCR-ntpase, human cance 96.2 0.0053 1.8E-07 62.0 6.0 24 292-315 3-26 (189)
247 1ex7_A Guanylate kinase; subst 96.2 0.031 1.1E-06 56.0 11.6 23 292-314 3-25 (186)
248 2iyv_A Shikimate kinase, SK; t 96.1 0.0027 9.3E-08 63.5 3.7 32 291-332 3-34 (184)
249 1g5t_A COB(I)alamin adenosyltr 96.1 0.0093 3.2E-07 60.1 7.5 116 694-822 29-169 (196)
250 1gvn_B Zeta; postsegregational 96.1 0.0066 2.3E-07 65.6 7.0 35 695-732 35-69 (287)
251 3hr8_A Protein RECA; alpha and 96.1 0.011 3.8E-07 65.6 8.9 84 695-779 63-153 (356)
252 2zr9_A Protein RECA, recombina 96.1 0.014 4.6E-07 65.0 9.5 83 695-778 63-152 (349)
253 3hr8_A Protein RECA; alpha and 96.1 0.018 6.2E-07 63.9 10.5 79 290-376 61-153 (356)
254 2ehv_A Hypothetical protein PH 96.1 0.015 5.3E-07 60.8 9.5 24 289-312 29-52 (251)
255 1g5t_A COB(I)alamin adenosyltr 96.1 0.014 4.9E-07 58.7 8.6 119 289-425 27-172 (196)
256 3foz_A TRNA delta(2)-isopenten 96.1 0.0069 2.4E-07 65.4 6.5 97 292-408 12-110 (316)
257 3kl4_A SRP54, signal recogniti 96.1 0.028 9.4E-07 64.0 11.8 40 693-732 97-136 (433)
258 2eyu_A Twitching motility prot 96.0 0.022 7.4E-07 60.6 10.3 25 694-718 26-50 (261)
259 1z6t_A APAF-1, apoptotic prote 96.0 0.013 4.5E-07 70.1 9.6 46 663-715 124-169 (591)
260 2z43_A DNA repair and recombin 96.0 0.016 5.6E-07 63.6 9.6 46 289-335 106-151 (324)
261 3lda_A DNA repair protein RAD5 96.0 0.018 6.3E-07 65.0 9.8 115 289-407 177-327 (400)
262 1kag_A SKI, shikimate kinase I 96.0 0.0038 1.3E-07 61.6 3.7 25 290-314 4-28 (173)
263 3jvv_A Twitching mobility prot 96.0 0.012 4.1E-07 65.5 8.1 119 268-409 106-232 (356)
264 1cr0_A DNA primase/helicase; R 96.0 0.029 9.8E-07 60.7 11.0 28 289-316 34-61 (296)
265 1qhx_A CPT, protein (chloramph 95.9 0.0039 1.3E-07 61.8 3.7 35 695-732 5-39 (178)
266 3a8t_A Adenylate isopentenyltr 95.9 0.0068 2.3E-07 66.4 5.8 32 291-332 41-72 (339)
267 1n0w_A DNA repair protein RAD5 95.9 0.012 3.9E-07 61.5 7.4 37 695-731 26-68 (243)
268 2ze6_A Isopentenyl transferase 95.9 0.0044 1.5E-07 65.7 4.0 31 292-332 3-33 (253)
269 2i3b_A HCR-ntpase, human cance 95.9 0.0035 1.2E-07 63.3 3.1 23 696-718 4-26 (189)
270 1w4r_A Thymidine kinase; type 95.9 0.0094 3.2E-07 60.0 6.1 91 696-792 23-117 (195)
271 1e6c_A Shikimate kinase; phosp 95.9 0.0045 1.5E-07 61.0 3.7 24 291-314 3-26 (173)
272 2rhm_A Putative kinase; P-loop 95.9 0.0032 1.1E-07 63.3 2.7 24 291-314 6-29 (193)
273 2cvh_A DNA repair and recombin 95.9 0.008 2.7E-07 61.6 5.8 34 695-731 22-55 (220)
274 1w36_D RECD, exodeoxyribonucle 95.8 0.018 6E-07 69.1 9.5 26 765-790 262-287 (608)
275 2cdn_A Adenylate kinase; phosp 95.8 0.0044 1.5E-07 63.0 3.7 26 289-314 19-44 (201)
276 1aky_A Adenylate kinase; ATP:A 95.8 0.0044 1.5E-07 64.0 3.7 26 289-314 3-28 (220)
277 1xx6_A Thymidine kinase; NESG, 95.8 0.0075 2.6E-07 60.9 5.2 100 293-410 11-120 (191)
278 2ius_A DNA translocase FTSK; n 95.8 0.055 1.9E-06 62.8 13.1 72 364-442 299-374 (512)
279 3trf_A Shikimate kinase, SK; a 95.8 0.0051 1.7E-07 61.4 3.9 28 695-725 7-34 (185)
280 2c95_A Adenylate kinase 1; tra 95.8 0.0044 1.5E-07 62.4 3.3 25 290-314 9-33 (196)
281 3lw7_A Adenylate kinase relate 95.8 0.0041 1.4E-07 61.1 3.0 22 292-314 3-24 (179)
282 1v5w_A DMC1, meiotic recombina 95.8 0.029 1E-06 62.2 10.3 45 290-335 122-166 (343)
283 2fz4_A DNA repair protein RAD2 95.7 0.021 7.3E-07 59.7 8.6 24 291-314 109-132 (237)
284 3t61_A Gluconokinase; PSI-biol 95.7 0.006 2.1E-07 62.0 4.2 25 290-314 18-42 (202)
285 2p5t_B PEZT; postsegregational 95.7 0.013 4.5E-07 61.9 7.0 36 694-732 33-68 (253)
286 2a5y_B CED-4; apoptosis; HET: 95.7 0.022 7.5E-07 67.5 9.7 44 666-715 131-174 (549)
287 2ewv_A Twitching motility prot 95.7 0.023 8E-07 63.7 9.3 88 694-791 137-233 (372)
288 1zu4_A FTSY; GTPase, signal re 95.7 0.057 2E-06 59.1 12.2 41 692-732 104-144 (320)
289 2dr3_A UPF0273 protein PH0284; 95.7 0.015 5E-07 60.8 7.1 37 695-731 25-61 (247)
290 2p5t_B PEZT; postsegregational 95.7 0.018 6.1E-07 60.9 7.8 25 290-314 32-56 (253)
291 1pzn_A RAD51, DNA repair and r 95.7 0.034 1.2E-06 61.8 10.3 38 276-314 118-155 (349)
292 1xp8_A RECA protein, recombina 95.7 0.017 5.8E-07 64.5 7.8 83 695-778 76-165 (366)
293 1w4r_A Thymidine kinase; type 95.7 0.012 4.2E-07 59.1 5.9 95 292-410 22-129 (195)
294 2cdn_A Adenylate kinase; phosp 95.7 0.0071 2.4E-07 61.4 4.3 28 689-717 17-44 (201)
295 1u94_A RECA protein, recombina 95.6 0.016 5.5E-07 64.5 7.5 83 695-778 65-154 (356)
296 1gvn_B Zeta; postsegregational 95.6 0.009 3.1E-07 64.6 5.1 25 290-314 33-57 (287)
297 3dl0_A Adenylate kinase; phosp 95.6 0.0047 1.6E-07 63.5 2.7 23 292-314 2-24 (216)
298 2pt5_A Shikimate kinase, SK; a 95.6 0.0056 1.9E-07 60.0 3.1 23 292-314 2-24 (168)
299 1kht_A Adenylate kinase; phosp 95.6 0.005 1.7E-07 61.7 2.8 25 291-315 4-28 (192)
300 1ak2_A Adenylate kinase isoenz 95.6 0.0066 2.2E-07 63.4 3.8 25 290-314 16-40 (233)
301 1ex7_A Guanylate kinase; subst 95.6 0.046 1.6E-06 54.8 9.8 22 696-717 4-25 (186)
302 1tev_A UMP-CMP kinase; ploop, 95.6 0.0054 1.8E-07 61.6 3.0 24 291-314 4-27 (196)
303 3vaa_A Shikimate kinase, SK; s 95.5 0.0074 2.5E-07 61.3 4.0 28 695-725 27-54 (199)
304 2fz4_A DNA repair protein RAD2 95.5 0.021 7.2E-07 59.8 7.6 105 695-816 110-229 (237)
305 3fb4_A Adenylate kinase; psych 95.5 0.0056 1.9E-07 62.9 3.1 23 292-314 2-24 (216)
306 1nks_A Adenylate kinase; therm 95.5 0.0072 2.4E-07 60.5 3.7 24 292-315 3-26 (194)
307 1qf9_A UMP/CMP kinase, protein 95.5 0.0055 1.9E-07 61.4 2.8 24 291-314 7-30 (194)
308 3cm0_A Adenylate kinase; ATP-b 95.5 0.0057 2E-07 61.1 2.9 24 291-314 5-28 (186)
309 3ice_A Transcription terminati 95.5 0.043 1.5E-06 60.9 9.9 37 280-316 163-200 (422)
310 2bwj_A Adenylate kinase 5; pho 95.5 0.0062 2.1E-07 61.5 3.1 24 291-314 13-36 (199)
311 3kb2_A SPBC2 prophage-derived 95.5 0.009 3.1E-07 58.6 4.2 23 695-717 3-25 (173)
312 3io5_A Recombination and repai 95.4 0.024 8.2E-07 61.3 7.4 83 695-778 30-124 (333)
313 1zd8_A GTP:AMP phosphotransfer 95.4 0.0063 2.2E-07 63.2 2.8 25 290-314 7-31 (227)
314 3a4m_A L-seryl-tRNA(SEC) kinas 95.4 0.027 9.1E-07 59.8 7.7 38 291-335 5-42 (260)
315 3be4_A Adenylate kinase; malar 95.3 0.0069 2.4E-07 62.4 3.0 24 291-314 6-29 (217)
316 1zuh_A Shikimate kinase; alpha 95.3 0.0091 3.1E-07 58.6 3.8 34 694-732 8-41 (168)
317 3tlx_A Adenylate kinase 2; str 95.3 0.011 3.9E-07 62.0 4.7 26 289-314 28-53 (243)
318 1nks_A Adenylate kinase; therm 95.3 0.0096 3.3E-07 59.6 3.9 38 695-732 3-40 (194)
319 1nlf_A Regulatory protein REPA 95.3 0.041 1.4E-06 58.9 9.2 24 695-718 32-55 (279)
320 1zak_A Adenylate kinase; ATP:A 95.3 0.0062 2.1E-07 63.0 2.5 25 290-314 5-29 (222)
321 2orv_A Thymidine kinase; TP4A 95.3 0.056 1.9E-06 55.8 9.6 90 696-791 22-114 (234)
322 4a74_A DNA repair and recombin 95.3 0.023 7.9E-07 58.6 6.9 37 695-731 27-69 (231)
323 1nlf_A Regulatory protein REPA 95.3 0.044 1.5E-06 58.7 9.3 29 289-317 29-57 (279)
324 1knq_A Gluconate kinase; ALFA/ 95.3 0.0088 3E-07 59.1 3.5 24 291-314 9-32 (175)
325 4eun_A Thermoresistant glucoki 95.3 0.012 4.2E-07 59.7 4.6 27 288-314 27-53 (200)
326 1sky_E F1-ATPase, F1-ATP synth 95.3 0.029 9.9E-07 64.1 8.0 26 290-315 151-176 (473)
327 2r6a_A DNAB helicase, replicat 95.3 0.018 6.1E-07 66.5 6.5 26 290-315 203-228 (454)
328 3kl4_A SRP54, signal recogniti 95.3 0.16 5.4E-06 57.8 14.1 37 290-333 97-133 (433)
329 1via_A Shikimate kinase; struc 95.2 0.0089 3E-07 59.2 3.3 33 695-732 6-38 (175)
330 1ukz_A Uridylate kinase; trans 95.2 0.0074 2.5E-07 61.3 2.8 24 291-314 16-39 (203)
331 1ly1_A Polynucleotide kinase; 95.2 0.0053 1.8E-07 60.8 1.6 21 292-312 4-24 (181)
332 3sr0_A Adenylate kinase; phosp 95.2 0.012 4.3E-07 60.1 4.3 23 292-314 2-24 (206)
333 3lxw_A GTPase IMAP family memb 95.2 0.056 1.9E-06 56.8 9.5 25 289-313 20-44 (247)
334 2pt7_A CAG-ALFA; ATPase, prote 95.2 0.02 6.9E-07 63.1 6.3 91 695-791 173-263 (330)
335 1e4v_A Adenylate kinase; trans 95.1 0.008 2.7E-07 61.8 2.7 23 292-314 2-24 (214)
336 2vli_A Antibiotic resistance p 95.1 0.0082 2.8E-07 59.7 2.6 25 290-314 5-29 (183)
337 2iyv_A Shikimate kinase, SK; t 95.1 0.011 3.9E-07 58.8 3.6 32 696-732 5-36 (184)
338 3ney_A 55 kDa erythrocyte memb 95.1 0.012 4E-07 59.7 3.6 26 289-314 18-43 (197)
339 3iij_A Coilin-interacting nucl 95.1 0.011 3.7E-07 58.8 3.4 23 695-717 13-35 (180)
340 2ze6_A Isopentenyl transferase 95.0 0.014 4.7E-07 61.9 4.2 30 696-728 4-33 (253)
341 2rhm_A Putative kinase; P-loop 95.0 0.012 4.2E-07 58.9 3.6 23 695-717 7-29 (193)
342 1zp6_A Hypothetical protein AT 95.0 0.0077 2.6E-07 60.4 2.1 25 290-314 9-33 (191)
343 1kht_A Adenylate kinase; phosp 95.0 0.014 4.8E-07 58.3 3.9 37 695-731 5-41 (192)
344 1w36_D RECD, exodeoxyribonucle 95.0 0.069 2.4E-06 64.0 10.6 27 290-316 164-190 (608)
345 3nwj_A ATSK2; P loop, shikimat 95.0 0.014 4.7E-07 61.7 3.9 25 290-314 48-72 (250)
346 2yvu_A Probable adenylyl-sulfa 95.0 0.017 5.9E-07 57.7 4.5 37 289-332 12-48 (186)
347 1knq_A Gluconate kinase; ALFA/ 94.9 0.019 6.4E-07 56.7 4.7 34 694-732 9-42 (175)
348 2yhs_A FTSY, cell division pro 94.9 0.094 3.2E-06 60.3 11.0 32 694-725 294-325 (503)
349 2ga8_A Hypothetical 39.9 kDa p 94.9 0.016 5.6E-07 63.8 4.4 28 287-314 21-48 (359)
350 1aky_A Adenylate kinase; ATP:A 94.9 0.015 5.1E-07 60.0 3.8 23 695-717 6-28 (220)
351 2xb4_A Adenylate kinase; ATP-b 94.9 0.013 4.6E-07 60.6 3.5 23 292-314 2-24 (223)
352 2xxa_A Signal recognition part 94.9 0.076 2.6E-06 60.6 10.0 43 691-733 98-141 (433)
353 3eph_A TRNA isopentenyltransfe 94.8 0.027 9.4E-07 63.1 6.1 93 292-408 4-102 (409)
354 2q6t_A DNAB replication FORK h 94.8 0.059 2E-06 62.0 9.1 26 291-316 201-226 (444)
355 1kag_A SKI, shikimate kinase I 94.8 0.014 4.7E-07 57.5 3.3 23 695-717 6-28 (173)
356 2jaq_A Deoxyguanosine kinase; 94.8 0.018 6.1E-07 58.2 4.1 23 292-314 2-24 (205)
357 2px0_A Flagellar biosynthesis 94.8 0.092 3.2E-06 56.8 10.0 27 289-315 104-130 (296)
358 3bh0_A DNAB-like replicative h 94.8 0.096 3.3E-06 57.2 10.3 27 290-316 68-94 (315)
359 1y63_A LMAJ004144AAA protein; 94.8 0.016 5.5E-07 57.9 3.7 35 695-733 12-46 (184)
360 3umf_A Adenylate kinase; rossm 94.8 0.015 5.2E-07 59.8 3.6 23 292-314 31-53 (217)
361 1e6c_A Shikimate kinase; phosp 94.8 0.015 5E-07 57.2 3.4 22 696-717 5-26 (173)
362 3uie_A Adenylyl-sulfate kinase 94.8 0.013 4.5E-07 59.4 3.1 28 288-315 23-50 (200)
363 1zp6_A Hypothetical protein AT 94.8 0.015 5.2E-07 58.2 3.5 35 695-732 11-45 (191)
364 2vli_A Antibiotic resistance p 94.8 0.014 4.8E-07 58.0 3.2 28 695-725 7-34 (183)
365 2qor_A Guanylate kinase; phosp 94.7 0.015 5.2E-07 59.2 3.5 25 290-314 12-36 (204)
366 2pbr_A DTMP kinase, thymidylat 94.7 0.022 7.7E-07 56.9 4.7 34 292-332 2-35 (195)
367 2gxq_A Heat resistant RNA depe 94.7 0.2 7E-06 50.4 12.0 24 291-314 39-63 (207)
368 3uie_A Adenylyl-sulfate kinase 94.7 0.024 8.3E-07 57.4 4.9 38 695-732 27-64 (200)
369 2pt7_A CAG-ALFA; ATPase, prote 94.7 0.031 1.1E-06 61.5 6.0 26 289-314 170-195 (330)
370 3lw7_A Adenylate kinase relate 94.6 0.015 5.2E-07 56.9 3.1 31 696-732 4-34 (179)
371 3t61_A Gluconokinase; PSI-biol 94.6 0.019 6.5E-07 58.2 3.9 33 695-732 20-52 (202)
372 2c95_A Adenylate kinase 1; tra 94.6 0.019 6.4E-07 57.7 3.8 23 695-717 11-33 (196)
373 1tev_A UMP-CMP kinase; ploop, 94.6 0.017 5.7E-07 57.9 3.3 33 695-732 5-37 (196)
374 2pt5_A Shikimate kinase, SK; a 94.6 0.019 6.6E-07 56.1 3.8 23 695-717 2-24 (168)
375 3fdi_A Uncharacterized protein 94.6 0.16 5.5E-06 51.5 10.7 28 695-725 8-35 (201)
376 3p32_A Probable GTPase RV1496/ 94.6 0.092 3.1E-06 58.4 9.7 28 289-316 78-105 (355)
377 3sr0_A Adenylate kinase; phosp 94.6 0.019 6.7E-07 58.6 3.8 33 696-733 3-35 (206)
378 1ukz_A Uridylate kinase; trans 94.6 0.019 6.4E-07 58.3 3.6 33 695-732 17-49 (203)
379 2j9r_A Thymidine kinase; TK1, 94.6 0.11 3.8E-06 53.0 9.2 96 294-410 32-140 (214)
380 1vma_A Cell division protein F 94.5 0.35 1.2E-05 52.4 13.9 39 693-731 104-142 (306)
381 2pez_A Bifunctional 3'-phospho 94.5 0.026 8.9E-07 56.0 4.5 36 290-332 5-40 (179)
382 1ak2_A Adenylate kinase isoenz 94.5 0.021 7.2E-07 59.5 3.9 23 695-717 18-40 (233)
383 1cke_A CK, MSSA, protein (cyti 94.5 0.024 8.2E-07 58.5 4.3 24 291-314 6-29 (227)
384 2if2_A Dephospho-COA kinase; a 94.5 0.015 5.2E-07 59.0 2.7 30 292-332 3-32 (204)
385 3fb4_A Adenylate kinase; psych 94.5 0.021 7.1E-07 58.5 3.8 22 696-717 3-24 (216)
386 3dl0_A Adenylate kinase; phosp 94.5 0.019 6.6E-07 58.8 3.5 22 696-717 3-24 (216)
387 3e2i_A Thymidine kinase; Zn-bi 94.5 0.048 1.6E-06 55.6 6.3 94 696-792 31-128 (219)
388 3cm0_A Adenylate kinase; ATP-b 94.4 0.017 5.9E-07 57.5 3.0 23 695-717 6-28 (186)
389 3umf_A Adenylate kinase; rossm 94.4 0.021 7.1E-07 58.8 3.6 34 695-733 31-64 (217)
390 2iut_A DNA translocase FTSK; n 94.4 0.21 7.2E-06 58.5 12.4 38 694-731 215-256 (574)
391 1qde_A EIF4A, translation init 94.4 0.18 6.3E-06 51.5 10.9 24 291-314 52-76 (224)
392 3lxx_A GTPase IMAP family memb 94.4 0.1 3.4E-06 54.3 8.9 25 289-313 28-52 (239)
393 2z0h_A DTMP kinase, thymidylat 94.4 0.031 1.1E-06 56.1 4.7 24 293-316 3-26 (197)
394 2plr_A DTMP kinase, probable t 94.4 0.02 6.7E-07 58.3 3.3 24 291-314 5-28 (213)
395 3io5_A Recombination and repai 94.4 0.066 2.3E-06 57.9 7.4 80 292-376 30-125 (333)
396 3tlx_A Adenylate kinase 2; str 94.3 0.048 1.7E-06 57.2 6.3 33 695-732 31-63 (243)
397 2i1q_A DNA repair and recombin 94.3 0.08 2.7E-06 58.0 8.2 25 290-314 98-122 (322)
398 1zd8_A GTP:AMP phosphotransfer 94.3 0.02 6.8E-07 59.3 3.1 23 695-717 9-31 (227)
399 1zak_A Adenylate kinase; ATP:A 94.3 0.018 6.2E-07 59.4 2.8 23 695-717 7-29 (222)
400 2pez_A Bifunctional 3'-phospho 94.3 0.033 1.1E-06 55.2 4.6 36 695-730 7-42 (179)
401 2yvu_A Probable adenylyl-sulfa 94.3 0.041 1.4E-06 54.9 5.4 37 695-731 15-51 (186)
402 3r20_A Cytidylate kinase; stru 94.3 0.03 1E-06 58.3 4.4 25 290-314 9-33 (233)
403 2bwj_A Adenylate kinase 5; pho 94.2 0.021 7.3E-07 57.4 3.2 33 695-732 14-46 (199)
404 2grj_A Dephospho-COA kinase; T 94.2 0.023 7.9E-07 57.4 3.4 31 292-332 14-44 (192)
405 1vma_A Cell division protein F 94.2 0.08 2.7E-06 57.5 7.9 27 290-316 104-130 (306)
406 3a4m_A L-seryl-tRNA(SEC) kinas 94.2 0.025 8.7E-07 60.0 3.9 38 695-732 6-43 (260)
407 1kao_A RAP2A; GTP-binding prot 94.2 0.42 1.4E-05 45.6 12.4 23 291-313 4-26 (167)
408 3d3q_A TRNA delta(2)-isopenten 94.2 0.023 8E-07 62.4 3.5 23 292-314 9-31 (340)
409 2ewv_A Twitching motility prot 94.1 0.057 2E-06 60.5 6.8 28 288-315 134-161 (372)
410 4eun_A Thermoresistant glucoki 94.1 0.04 1.4E-06 55.8 5.0 33 695-732 31-63 (200)
411 3lda_A DNA repair protein RAD5 94.1 0.056 1.9E-06 61.0 6.7 37 695-731 180-222 (400)
412 3be4_A Adenylate kinase; malar 94.1 0.024 8.4E-07 58.2 3.4 23 695-717 7-29 (217)
413 1kgd_A CASK, peripheral plasma 94.1 0.023 7.9E-07 56.6 3.1 24 291-314 6-29 (180)
414 1rz3_A Hypothetical protein rb 94.1 0.059 2E-06 54.6 6.3 37 695-731 24-60 (201)
415 2wwf_A Thymidilate kinase, put 94.1 0.022 7.6E-07 58.0 3.0 26 290-315 10-35 (212)
416 1qf9_A UMP/CMP kinase, protein 94.1 0.024 8.2E-07 56.6 3.2 33 695-732 8-40 (194)
417 1rz3_A Hypothetical protein rb 94.1 0.054 1.8E-06 54.9 5.9 41 275-315 4-47 (201)
418 2orv_A Thymidine kinase; TP4A 94.1 0.15 5.2E-06 52.5 9.2 96 293-411 22-129 (234)
419 1nn5_A Similar to deoxythymidy 94.1 0.024 8.1E-07 57.9 3.2 26 290-315 9-34 (215)
420 1ly1_A Polynucleotide kinase; 94.0 0.024 8.3E-07 55.9 3.1 32 695-730 4-35 (181)
421 3e70_C DPA, signal recognition 94.0 0.14 4.6E-06 56.3 9.3 32 694-725 130-161 (328)
422 1e4v_A Adenylate kinase; trans 94.0 0.028 9.6E-07 57.6 3.6 23 695-717 2-24 (214)
423 2v54_A DTMP kinase, thymidylat 94.0 0.022 7.6E-07 57.6 2.8 25 290-314 4-28 (204)
424 1nrj_B SR-beta, signal recogni 94.0 0.074 2.5E-06 54.2 6.8 27 288-314 10-36 (218)
425 3tau_A Guanylate kinase, GMP k 94.0 0.022 7.6E-07 58.2 2.7 25 290-314 8-32 (208)
426 3h1t_A Type I site-specific re 93.9 0.11 3.9E-06 61.9 9.3 41 668-718 183-223 (590)
427 3ake_A Cytidylate kinase; CMP 93.9 0.027 9.3E-07 57.1 3.3 23 292-314 4-26 (208)
428 2pbr_A DTMP kinase, thymidylat 93.9 0.039 1.3E-06 55.1 4.4 33 696-728 3-35 (195)
429 3crm_A TRNA delta(2)-isopenten 93.9 0.032 1.1E-06 60.9 3.9 31 695-728 7-37 (323)
430 1vec_A ATP-dependent RNA helic 93.9 0.55 1.9E-05 47.1 13.1 18 291-308 41-58 (206)
431 3fe2_A Probable ATP-dependent 93.9 0.59 2E-05 48.5 13.7 19 291-309 67-85 (242)
432 1jjv_A Dephospho-COA kinase; P 93.9 0.022 7.4E-07 57.9 2.5 21 292-312 4-24 (206)
433 3lnc_A Guanylate kinase, GMP k 93.9 0.25 8.7E-06 50.9 10.7 23 695-717 29-52 (231)
434 3zvl_A Bifunctional polynucleo 93.8 0.077 2.6E-06 60.4 7.1 25 290-314 258-282 (416)
435 3c8u_A Fructokinase; YP_612366 93.8 0.039 1.3E-06 56.3 4.1 39 277-315 7-47 (208)
436 4a1f_A DNAB helicase, replicat 93.8 0.043 1.5E-06 60.4 4.6 35 291-332 47-81 (338)
437 2zts_A Putative uncharacterize 93.7 0.13 4.6E-06 53.4 8.3 25 289-313 29-53 (251)
438 2og2_A Putative signal recogni 93.7 0.98 3.3E-05 50.0 15.6 31 693-723 157-187 (359)
439 1uj2_A Uridine-cytidine kinase 93.7 0.042 1.4E-06 57.9 4.3 45 291-337 23-67 (252)
440 1c9k_A COBU, adenosylcobinamid 93.7 0.052 1.8E-06 54.0 4.7 33 696-732 2-34 (180)
441 1lvg_A Guanylate kinase, GMP k 93.7 0.035 1.2E-06 56.2 3.5 25 290-314 4-28 (198)
442 3bgw_A DNAB-like replicative h 93.7 0.21 7.1E-06 57.3 10.3 26 291-316 198-223 (444)
443 3foz_A TRNA delta(2)-isopenten 93.7 0.038 1.3E-06 59.7 3.9 31 696-729 13-43 (316)
444 3ly5_A ATP-dependent RNA helic 93.6 0.21 7.2E-06 52.8 9.7 19 291-309 92-110 (262)
445 2pl3_A Probable ATP-dependent 93.6 0.59 2E-05 48.2 13.0 20 290-309 62-81 (236)
446 2bbw_A Adenylate kinase 4, AK4 93.6 0.034 1.2E-06 58.3 3.5 25 290-314 27-51 (246)
447 3b9q_A Chloroplast SRP recepto 93.6 0.18 6.1E-06 54.6 9.2 30 694-723 101-130 (302)
448 3nwj_A ATSK2; P loop, shikimat 93.6 0.056 1.9E-06 56.9 5.1 23 695-717 50-72 (250)
449 2plr_A DTMP kinase, probable t 93.6 0.054 1.8E-06 54.9 4.8 23 695-717 6-28 (213)
450 2ga8_A Hypothetical 39.9 kDa p 93.6 0.079 2.7E-06 58.4 6.3 24 694-717 25-48 (359)
451 2dyk_A GTP-binding protein; GT 93.6 0.19 6.6E-06 47.9 8.5 22 292-313 3-24 (161)
452 2xb4_A Adenylate kinase; ATP-b 93.5 0.036 1.2E-06 57.3 3.4 22 696-717 3-24 (223)
453 2jaq_A Deoxyguanosine kinase; 93.5 0.046 1.6E-06 55.1 4.2 22 696-717 3-24 (205)
454 1m7g_A Adenylylsulfate kinase; 93.5 0.036 1.2E-06 56.7 3.3 28 288-315 23-50 (211)
455 2bdt_A BH3686; alpha-beta prot 93.5 0.033 1.1E-06 55.7 2.9 23 292-314 4-26 (189)
456 2h92_A Cytidylate kinase; ross 93.5 0.041 1.4E-06 56.4 3.7 24 291-314 4-27 (219)
457 2px0_A Flagellar biosynthesis 93.5 0.17 5.8E-06 54.7 8.7 39 694-732 106-145 (296)
458 3dkp_A Probable ATP-dependent 93.5 0.49 1.7E-05 49.1 12.2 19 290-308 66-84 (245)
459 2j41_A Guanylate kinase; GMP, 93.4 0.038 1.3E-06 55.9 3.2 25 290-314 6-30 (207)
460 4e22_A Cytidylate kinase; P-lo 93.4 0.053 1.8E-06 57.2 4.4 25 290-314 27-51 (252)
461 1wb9_A DNA mismatch repair pro 93.4 0.28 9.5E-06 60.3 11.4 114 290-410 607-732 (800)
462 2z0h_A DTMP kinase, thymidylat 93.3 0.055 1.9E-06 54.2 4.3 30 696-725 3-32 (197)
463 2v3c_C SRP54, signal recogniti 93.3 0.035 1.2E-06 63.4 3.2 80 285-374 94-192 (432)
464 3a8t_A Adenylate isopentenyltr 93.3 0.036 1.2E-06 60.7 3.0 31 695-728 42-72 (339)
465 3vkw_A Replicase large subunit 93.3 0.21 7.1E-06 56.7 9.4 89 695-791 163-260 (446)
466 3tr0_A Guanylate kinase, GMP k 93.2 0.042 1.4E-06 55.5 3.3 24 291-314 8-31 (205)
467 1vht_A Dephospho-COA kinase; s 93.2 0.041 1.4E-06 56.5 3.1 23 291-314 5-27 (218)
468 3thx_B DNA mismatch repair pro 93.2 0.18 6.1E-06 62.8 9.4 115 291-410 674-798 (918)
469 2wwf_A Thymidilate kinase, put 93.2 0.06 2.1E-06 54.7 4.4 23 695-717 12-34 (212)
470 2j37_W Signal recognition part 93.2 0.14 4.9E-06 59.3 8.0 74 288-369 99-190 (504)
471 3a00_A Guanylate kinase, GMP k 93.2 0.044 1.5E-06 54.8 3.3 24 292-315 3-26 (186)
472 2qor_A Guanylate kinase; phosp 93.2 0.041 1.4E-06 55.9 3.1 22 696-717 15-36 (204)
473 2if2_A Dephospho-COA kinase; a 93.1 0.043 1.5E-06 55.6 3.1 32 695-732 3-34 (204)
474 1q3t_A Cytidylate kinase; nucl 93.1 0.051 1.7E-06 56.6 3.7 26 289-314 15-40 (236)
475 1kgd_A CASK, peripheral plasma 93.0 0.053 1.8E-06 53.9 3.6 23 695-717 7-29 (180)
476 1cke_A CK, MSSA, protein (cyti 93.0 0.061 2.1E-06 55.3 4.1 33 695-732 7-39 (227)
477 2qmh_A HPR kinase/phosphorylas 93.0 0.035 1.2E-06 55.9 2.1 26 289-314 33-58 (205)
478 1m7g_A Adenylylsulfate kinase; 93.0 0.065 2.2E-06 54.7 4.3 37 695-731 27-64 (211)
479 1svm_A Large T antigen; AAA+ f 92.9 0.056 1.9E-06 60.5 3.9 27 288-314 167-193 (377)
480 3c8u_A Fructokinase; YP_612366 92.9 0.18 6.1E-06 51.3 7.5 24 695-718 24-47 (208)
481 3llm_A ATP-dependent RNA helic 92.9 0.29 1E-05 50.7 9.3 20 695-714 78-97 (235)
482 3r20_A Cytidylate kinase; stru 92.9 0.067 2.3E-06 55.6 4.2 33 695-732 11-43 (233)
483 2r6a_A DNAB helicase, replicat 92.9 0.14 4.9E-06 58.8 7.5 35 695-729 205-240 (454)
484 1odf_A YGR205W, hypothetical 3 92.9 0.12 4.1E-06 55.7 6.3 23 695-717 33-55 (290)
485 2oxc_A Probable ATP-dependent 92.9 0.94 3.2E-05 46.5 13.1 25 290-314 61-86 (230)
486 1hv8_A Putative ATP-dependent 92.8 0.27 9.1E-06 54.1 9.3 25 290-314 44-68 (367)
487 1nn5_A Similar to deoxythymidy 92.8 0.06 2.1E-06 54.8 3.7 23 695-717 11-33 (215)
488 1g8f_A Sulfate adenylyltransfe 92.8 0.11 3.9E-06 60.2 6.4 56 259-315 361-420 (511)
489 4b3f_X DNA-binding protein smu 92.7 0.16 5.5E-06 61.3 7.9 34 696-729 208-241 (646)
490 1uj2_A Uridine-cytidine kinase 92.7 0.089 3.1E-06 55.3 5.0 39 695-733 24-67 (252)
491 3iuy_A Probable ATP-dependent 92.7 0.51 1.7E-05 48.4 10.7 20 290-309 57-76 (228)
492 2qt1_A Nicotinamide riboside k 92.7 0.093 3.2E-06 53.2 4.9 34 695-732 23-56 (207)
493 1q57_A DNA primase/helicase; d 92.7 0.26 8.9E-06 57.5 9.4 26 291-316 243-268 (503)
494 2f6r_A COA synthase, bifunctio 92.7 0.046 1.6E-06 58.7 2.7 23 291-314 76-98 (281)
495 1r8s_A ADP-ribosylation factor 92.6 0.45 1.5E-05 45.5 9.6 29 292-320 2-30 (164)
496 3b6e_A Interferon-induced heli 92.6 0.12 4.2E-06 52.3 5.8 24 291-314 49-72 (216)
497 2z0m_A 337AA long hypothetical 92.6 0.35 1.2E-05 52.5 9.8 24 290-313 31-54 (337)
498 2xxa_A Signal recognition part 92.6 0.15 5.2E-06 58.1 6.9 41 289-335 99-139 (433)
499 3tau_A Guanylate kinase, GMP k 92.5 0.062 2.1E-06 54.8 3.4 23 695-717 10-32 (208)
500 3ber_A Probable ATP-dependent 92.5 0.8 2.7E-05 47.8 12.1 19 290-308 80-98 (249)
No 1
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=100.00 E-value=6.4e-104 Score=993.58 Aligned_cols=850 Identities=56% Similarity=0.896 Sum_probs=740.0
Q ss_pred CCcccccHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhcCCCcHHHHHHHHcCCChHHHHHHHHHhhccCCCCCCCCCC
Q 002012 92 ITPTEFTEKAWEGIVGAVDAARVNNQQVVETEHLMKALLEQKDGLARRILTKAGQDNTKVLQATEDFISKQPKVTGATSG 171 (982)
Q Consensus 92 ~~~~~ft~~a~~~l~~A~~~A~~~~~~~v~~eHlLlaLl~~~~~~~~~iL~~~gv~~~~l~~~~~~~~~~~~~~~~~~~~ 171 (982)
|||++||++++++|..|+++|+++||++|+|||||+|||+++++.+.++|.++|+|++.++.++...+++.|...+....
T Consensus 1 ~~~~~~t~~a~~al~~A~~~A~~~~h~~i~~eHLLlaLl~~~~~~~~~iL~~~gvd~~~l~~~l~~~l~~~p~~~~~~~~ 80 (854)
T 1qvr_A 1 MNLERWTQAAREALAQAQVLAQRMKHQAIDLPHLWAVLLKDERSLAWRLLEKAGADPKALKELQERELARLPKVEGAEVG 80 (854)
T ss_dssp ---CCSCHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHCCSSSSHHHHHHHTTSSCHHHHHHHHHHHHHTSCCCCGGGTT
T ss_pred CChhhhCHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCCcHHHHHHHHcCCCHHHHHHHHHHHHhhCCCCCCCCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999998876543346
Q ss_pred CccChhhHHHHHHHHHHHHHcCCCccCHHHHHHHHhcCCcccccccccccCCHHHHHHHHHhhhcccccccCCCCchhHH
Q 002012 172 PIVGSNFGLLLSNAQRIKKEMEDDFVSVEHLLLAFLSDDRFGRLLFNDIRLNEKDLKDAVKAVRGHQRVTDQNPEGKYQA 251 (982)
Q Consensus 172 ~~~s~~~~~vl~~A~~~a~~~g~~~I~~ehLllall~~~~~a~~lL~~~gi~~~~l~~~i~~~~~~~~~~~~~~~~~~~~ 251 (982)
+++|+.++++|+.|+.+|..+|++||+++|||+||+++.+.+ ++...++..+....+...+.+..++..++.
T Consensus 81 ~~~S~~~~~vL~~A~~~a~~~g~~~I~~ehlLlall~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (854)
T 1qvr_A 81 QYLTSRLSGALNRAEGLMEELKDRYVAVDTLVLALAEATPGL--------PGLEALKGALKELRGGRTVQTEHAESTYNA 152 (854)
T ss_dssp CEECHHHHHHHHHHHHHHHTTTCSSCCHHHHHHHHHHHSTTS--------CCHHHHHHHHTSSCSCCSSCSSCCCCCCSH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCcEeeHHHHHHHHHhccccc--------CCHHHHHHHHHHhccccccccccccccchh
Confidence 899999999999999999999999999999999999544322 889999999988776555544555556788
Q ss_pred HHHhhhhhHHHhhcCCCCCcccchHHHHHHHHHhccCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEE
Q 002012 252 LEKYGNDLTELARSGKLDPVIGRDDEIRRCIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISL 331 (982)
Q Consensus 252 l~~~~~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l 331 (982)
|++|+.+|++++++++++++||+++++++++++|.++.++|++|+||||||||++|+++|+.+..+.+|..+.+.+++.+
T Consensus 153 l~~~~~~l~~~~r~~~ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 232 (854)
T 1qvr_A 153 LEQYGIDLTRLAAEGKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSL 232 (854)
T ss_dssp HHHHEEEHHHHHHTTCSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEE
T ss_pred HHHHHHhHHHHHhcCCCcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccccccccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCCCeEEEEecCchhHh
Q 002012 332 DMASLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRGELRCIGATTLNEYR 411 (982)
Q Consensus 332 ~~~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g~i~vI~at~~~~~~ 411 (982)
+++.+.+|..+.|+++.+++.++..+...++++||||||+|.+.+.+...+..++.+.|+++++++.+.+|++||.++|.
T Consensus 233 ~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~~i~~I~at~~~~~~ 312 (854)
T 1qvr_A 233 QMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELRLIGATTLDEYR 312 (854)
T ss_dssp CC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHTTCCCEEEEECHHHHH
T ss_pred ehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhCCCeEEEEecCchHHh
Confidence 99999998899999999999999999876678999999999999877766778889999999999999999999999998
Q ss_pred hhhhcChHHHhccceEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCCcchhhHHHHHHHHH
Q 002012 412 NYIEKDPALERRFQQVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLPDKAIDLVDEAAAK 491 (982)
Q Consensus 412 ~~~~~d~al~rRf~~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~p~~a~~lld~a~~~ 491 (982)
+ +.++++|.|||+.|.+++|+.+++..||+.+..+|+.+|++.++++++..++.++.+|+.++++|+++++++|+|++.
T Consensus 313 ~-~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~kai~lldea~a~ 391 (854)
T 1qvr_A 313 E-IEKDPALERRFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAIDLIDEAAAR 391 (854)
T ss_dssp H-HTTCTTTCSCCCCEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHHHHHHHHHHHH
T ss_pred h-hccCHHHHhCCceEEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChHHHHHHHHHHHHH
Confidence 8 789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCccchHHHHHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002012 492 LKMEITSKPIELDEIDRAVLKLEMEKLSLKNDTDKASKERLSKLEHDLNSLKQKQKELNDQWSREKDLMSRIRSIKEEID 571 (982)
Q Consensus 492 ~~~~~~~~~~~l~~~~~~~~~~~~e~~~l~~~~~~~~~~~l~~~~~e~~~l~~~~~~l~~~~~~e~~~~~~~~~~~~~~~ 571 (982)
+++...+.|..++.+++++.+++.+...+..+.+..+.+++..++.|+..++++++.+..+|.+++..++.++.++++++
T Consensus 392 ~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (854)
T 1qvr_A 392 LRMALESAPEEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLD 471 (854)
T ss_dssp HHHTTTTHHHHHHHHHHHHHHHHHHHHHHSSCSSHHHHSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhccCCchhHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcHHHHHHhhhcchHHHHHHHHHHHHhHHHHHhcCCccccccCCHhHHHHHHHHhhCCCCcccchhHH
Q 002012 572 RVNLEMEAAERDYDLNRAAELKYGTMISLQRQLEEAEKNLSEFQKSGHSLLREEVTDLDIAEIVSKWTGIPLSSLQQSER 651 (982)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~gi~~~~~~~~~~ 651 (982)
.++..++.+++.+++.+++++.|+.++.+++++...+.. ......+...++.+++..+++.|+|+|..++...+.
T Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~v~~~~l~~~v~~~~~ip~~~~~~~~~ 546 (854)
T 1qvr_A 472 EVRREIELAERQYDLNRAAELRYGELPKLEAEVEALSEK-----LRGARFVRLEVTEEDIAEIVSRWTGIPVSKLLEGER 546 (854)
T ss_dssp HHHHHHHHHTTTTCHHHHHHHHTTHHHHHHHHHHHHHHH-----SSSCSSCCSEECHHHHHHHHHTTSSCHHHHTTCCHH
T ss_pred HHhhhHHHHHhcccHHHHHHHhhhhhHHHHHHHHHHHhh-----hcccccccCCcCHHHHHHHHHHHhCCChHhhcHHHH
Confidence 999999999999999999999999999999988766542 223345667899999999999999999988877777
Q ss_pred HHHHHHHHhhhcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccc
Q 002012 652 EKLVMLEEVLHKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSE 731 (982)
Q Consensus 652 ~~l~~l~~~l~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~ 731 (982)
..+..+++.++..|+||+.+++.+..++.+.+.|+.+|.+|.+++||+||||||||++|++||+.+++.+.+++.+||++
T Consensus 547 ~~l~~l~~~l~~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~ 626 (854)
T 1qvr_A 547 EKLLRLEEELHKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTE 626 (854)
T ss_dssp HHHHSHHHHHHHHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTT
T ss_pred HHHHHHHHHHhcccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechh
Confidence 77888888999999999999999999999999999999999989999999999999999999999998889999999999
Q ss_pred cccccccccccCCCCCccccccCCchhHHHhhCCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEE
Q 002012 732 YMEKHSVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIM 811 (982)
Q Consensus 732 ~~~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~ 811 (982)
+.+.+..+.++|.+++|+|+..++.+++.++..+++|||||||+++++++++.|+++|++|.+++..|+.++|.+++||+
T Consensus 627 ~~~~~~~s~l~g~~~~~~G~~~~g~l~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~ 706 (854)
T 1qvr_A 627 YMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIIL 706 (854)
T ss_dssp CCSSGGGGGC--------------CHHHHHHHCSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEE
T ss_pred ccchhHHHHHcCCCCCCcCccccchHHHHHHhCCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEE
Confidence 99988889999999999999998889999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHHHHHHHHHhCC
Q 002012 812 TSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKK 891 (982)
Q Consensus 812 tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~~~~~~~~~ 891 (982)
|||.+...+.+... .+. .+..+...+.+.+++.|+|+|++|||.++.|.|++.+++..|+..++.++..++...+
T Consensus 707 tsn~~~~~~~~~~~-~~~----~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~~~ 781 (854)
T 1qvr_A 707 TSNLGSPLILEGLQ-KGW----PYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKR 781 (854)
T ss_dssp ECCTTHHHHHHHHH-TTC----CHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred ecCcChHHHhhhcc-ccc----chHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99998876654211 110 1345667777778999999999999999999999999999999999999999888777
Q ss_pred CCccCCHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEEeecCCCCCCCCCCCceEEEecc
Q 002012 892 IDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAILKGDIKEEDSVIIDVDDSPSAKDLPPRNKLCIKKLE 970 (982)
Q Consensus 892 ~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~l~~~la~~~l~~~~~~~~~i~v~~~~~~~~~~~~~~~~l~~~~~~ 970 (982)
+.+.++++++++|+.++|++.+|+|+|+++|++.+..++++.++.+++++|++|.|+++ ++.++|...+
T Consensus 782 ~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~----------~~~~~~~~~~ 850 (854)
T 1qvr_A 782 ISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKILAGEVKEGDRVQVDVG----------PAGLVFAVPA 850 (854)
T ss_dssp CEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHHHHHHHHHTSSCSSCEEEEECC----------TTSCEEESCC
T ss_pred ceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHHHHHhCcCCCCCEEEEEEE----------CCEEEEEecC
Confidence 77899999999999999998899999999999999999999999999999999999886 4567776544
No 2
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=100.00 E-value=3.7e-96 Score=913.98 Aligned_cols=751 Identities=46% Similarity=0.772 Sum_probs=627.4
Q ss_pred CCcccccHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhcCCCcHHHHHHHHcCCChHHHHHHHHHhhccCCCCCCCCCC
Q 002012 92 ITPTEFTEKAWEGIVGAVDAARVNNQQVVETEHLMKALLEQKDGLARRILTKAGQDNTKVLQATEDFISKQPKVTGATSG 171 (982)
Q Consensus 92 ~~~~~ft~~a~~~l~~A~~~A~~~~~~~v~~eHlLlaLl~~~~~~~~~iL~~~gv~~~~l~~~~~~~~~~~~~~~~~~~~ 171 (982)
|||++||++|+++|..|+++|+++||++|+|||||+|||.++++.+.++|+++|+|++.++++++..+++++... ..
T Consensus 1 mm~~~~t~~a~~~l~~A~~~A~~~~h~~i~~eHlLlaLl~~~~~~~~~iL~~~gvd~~~l~~~l~~~l~~~~~~~---~~ 77 (758)
T 3pxi_A 1 MMFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEVESLIGRGQEMS---QT 77 (758)
T ss_dssp --CCCBCHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSCCSHHHHHHHHHTCCHHHHHHHHHTTSCCCCTTC---SS
T ss_pred CchhhhCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhccCcHHHHHHHHcCCCHHHHHHHHHHHhccCCCCC---CC
Confidence 799999999999999999999999999999999999999999999999999999999999999999999887543 35
Q ss_pred CccChhhHHHHHHHHHHHHHcCCCccCHHHHHHHHh-cCCcccccccccccCCHHHHHHHHHhhhcccccccC----CCC
Q 002012 172 PIVGSNFGLLLSNAQRIKKEMEDDFVSVEHLLLAFL-SDDRFGRLLFNDIRLNEKDLKDAVKAVRGHQRVTDQ----NPE 246 (982)
Q Consensus 172 ~~~s~~~~~vl~~A~~~a~~~g~~~I~~ehLllall-~~~~~a~~lL~~~gi~~~~l~~~i~~~~~~~~~~~~----~~~ 246 (982)
++||+.++++|+.|+.+|.++|++||+++|||+||+ ++.+.+.++|+++|++.+.+++.+....+....... .+.
T Consensus 78 ~~~s~~~~~vl~~A~~~A~~~~~~~I~~ehlLlall~~~~~~a~~~L~~~gv~~~~l~~~i~~~~~~~~~~~~~~~~~~~ 157 (758)
T 3pxi_A 78 IHYTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNETGSSAAGTNSN 157 (758)
T ss_dssp CEECHHHHHHHHHHHHHHHTTTCSSBCHHHHHHHHHHTCCSHHHHHHHHTTCCHHHHHHHHHTTCCCCCTTC-----CCS
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhcCCcHHHHHHHHcCCCHHHHHHHHHHHhcCCcccccccccccc
Confidence 899999999999999999999999999999999999 455778899999999999999999988775543221 334
Q ss_pred chhHHHHHhhhhhHHHhhcCCCCCcccchHHHHHHHHHhccCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCC
Q 002012 247 GKYQALEKYGNDLTELARSGKLDPVIGRDDEIRRCIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNR 326 (982)
Q Consensus 247 ~~~~~l~~~~~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~ 326 (982)
..++.+++|+.+|++++++++++++||+++++++++++|.++.++|+||+||||||||++|+++|+.+.++++|..+.++
T Consensus 158 ~~~~~l~~~~~~l~~~~~~~~ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~ 237 (758)
T 3pxi_A 158 ANTPTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDK 237 (758)
T ss_dssp THHHHHHSSCCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSC
T ss_pred hhhhHHHHHHHHHHHHHhhCCCCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCC
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecccccccccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCCCeEEEEecC
Q 002012 327 KLISLDMASLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRGELRCIGATT 406 (982)
Q Consensus 327 ~v~~l~~~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g~i~vI~at~ 406 (982)
.++.+++ +.+|.|+++.+++.++..+.. .+++||||| +..++++.|+++++++.+++|++||
T Consensus 238 ~~~~~~~-----g~~~~G~~e~~l~~~~~~~~~-~~~~iLfiD------------~~~~~~~~L~~~l~~~~v~~I~at~ 299 (758)
T 3pxi_A 238 RVMTLDM-----GTKYRGEFEDRLKKVMDEIRQ-AGNIILFID------------AAIDASNILKPSLARGELQCIGATT 299 (758)
T ss_dssp CEECC---------------CTTHHHHHHHHHT-CCCCEEEEC------------C--------CCCTTSSSCEEEEECC
T ss_pred eEEEecc-----cccccchHHHHHHHHHHHHHh-cCCEEEEEc------------CchhHHHHHHHHHhcCCEEEEeCCC
Confidence 9999987 677999999999999999987 567899999 2356889999999999999999999
Q ss_pred chhHhhhhhcChHHHhccceEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCCcchhhHHHH
Q 002012 407 LNEYRNYIEKDPALERRFQQVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLPDKAIDLVD 486 (982)
Q Consensus 407 ~~~~~~~~~~d~al~rRf~~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~p~~a~~lld 486 (982)
..+|++++.+|++|.|||+.|.|+.|+.+++..||+.+..+|+.++++.++++++..++.++.+|+.++++|++++++++
T Consensus 300 ~~~~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~ll~ 379 (758)
T 3pxi_A 300 LDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLID 379 (758)
T ss_dssp TTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHH
T ss_pred hHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhccCCccchHHHHHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002012 487 EAAAKLKMEITSKPIELDEIDRAVLKLEMEKLSLKNDTDKASKERLSKLEHDLNSLKQKQKELNDQWSREKDLMSRIRSI 566 (982)
Q Consensus 487 ~a~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~l~~~~~~~~~~~l~~~~~e~~~l~~~~~~l~~~~~~e~~~~~~~~~~ 566 (982)
+|++.+.+.....|..+..+++.+.+++.+...+....+. ++...+..++..++..+.++...|..+
T Consensus 380 ~a~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~l~~~~~~~~~~---------- 446 (758)
T 3pxi_A 380 EAGSKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEF---EKAASLRDTEQRLREQVEDTKKSWKEK---------- 446 (758)
T ss_dssp HHHHHHHHHTTC--CCTHHHHHHHHHHHHHHHHHHHHCCS---HHHHHHHHHHHHHHHHHHHHHSGGGHH----------
T ss_pred HHHHHHHhhccCCCcchhhHHHHHHHHHHHHHHHHhCcCH---HHHHHHHHHHHHHHHHHHHHHHHHHHh----------
Confidence 9999999998889999999888887777665433322111 112222222222222222222222211
Q ss_pred HHHHHHHHHHHHHHHhhhcHHHHHHhhhcchHHHHHHHHHHHHhHHHHHhcCCccccccCCHhHHHHHHHHhhCCCCccc
Q 002012 567 KEEIDRVNLEMEAAERDYDLNRAAELKYGTMISLQRQLEEAEKNLSEFQKSGHSLLREEVTDLDIAEIVSKWTGIPLSSL 646 (982)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~gi~~~~~ 646 (982)
. ......++.+++..+++.|+++|+..+
T Consensus 447 ------------------------------------------------~----~~~~~~v~~~~i~~~v~~~~~ip~~~~ 474 (758)
T 3pxi_A 447 ------------------------------------------------Q----GQENSEVTVDDIAMVVSSWTGVPVSKI 474 (758)
T ss_dssp ------------------------------------------------H----HCC---CCTHHHHHHHHTTC-------
T ss_pred ------------------------------------------------h----cccCcccCHHHHHHHHHHHhCCChHHh
Confidence 0 113456888999999999999999998
Q ss_pred chhHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEE
Q 002012 647 QQSEREKLVMLEEVLHKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVR 726 (982)
Q Consensus 647 ~~~~~~~l~~l~~~l~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~ 726 (982)
...+...+..+.+.+...++||+.+++.+..++...+.+..+|.+|.+++||+||||||||++|+++|+.+++.+.++++
T Consensus 475 ~~~~~~~l~~l~~~l~~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~ 554 (758)
T 3pxi_A 475 AQTETDKLLNMENILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIR 554 (758)
T ss_dssp CHHHHSCC-CHHHHHHTTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEE
T ss_pred hHHHHHHHHHHHHHHhCcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEE
Confidence 88888788888999999999999999999999999999999999999899999999999999999999999988999999
Q ss_pred EeccccccccccccccCCCCCccccccCCchhHHHhhCCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEeccc
Q 002012 727 IDMSEYMEKHSVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTN 806 (982)
Q Consensus 727 i~~s~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~ 806 (982)
+||+++.+.+... ++.+++.++..+++||||||||++++++++.|+++|++|.+++..|+.+++.+
T Consensus 555 i~~s~~~~~~~~~--------------~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~ 620 (758)
T 3pxi_A 555 IDMSEYMEKHSTS--------------GGQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRN 620 (758)
T ss_dssp EEGGGGCSSCCCC-----------------CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTT
T ss_pred Eechhcccccccc--------------cchhhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCC
Confidence 9999997654332 35588899999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHHHHHHH
Q 002012 807 CVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDR 886 (982)
Q Consensus 807 ~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~~~~ 886 (982)
++||+|||.+... ...+.+.+++.|+|+|++|||.+|.|+||+.+++.+|+...+..+.++
T Consensus 621 ~~iI~ttn~~~~~-------------------~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~ 681 (758)
T 3pxi_A 621 TILIMTSNVGASE-------------------KDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKR 681 (758)
T ss_dssp CEEEEEESSSTTC-------------------CHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCChhh-------------------HHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999987641 112334456779999999999999999999999999999999999999
Q ss_pred HHhCCCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEEeecCCCCCCCCCCCceEE
Q 002012 887 LKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAILKGDIKEEDSVIIDVDDSPSAKDLPPRNKLCI 966 (982)
Q Consensus 887 ~~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~l~~~la~~~l~~~~~~~~~i~v~~~~~~~~~~~~~~~~l~~ 966 (982)
+...++.+.++++++++|+..+|++.+|+|+|+++|++.+..++++.++.+.+++|++|.|+++ +++++|
T Consensus 682 ~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~i~~~v~~~l~~~~l~~~~~~~~~~~~~~~----------~~~~~~ 751 (758)
T 3pxi_A 682 LKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKHVEDRLSEELLRGNIHKGQHIVLDVE----------DGEFVV 751 (758)
T ss_dssp HHTTTCEEEECHHHHHHHHGGGCCTTTTTTTHHHHHHHHTHHHHHHHHHTTCSCSSSEEEEEES----------SSSEEE
T ss_pred HHhCCCeEEECHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEEEE----------CCEEEE
Confidence 9888888999999999999999999999999999999999999999999999999999999998 568999
Q ss_pred EeccC
Q 002012 967 KKLES 971 (982)
Q Consensus 967 ~~~~~ 971 (982)
...++
T Consensus 752 ~~~~~ 756 (758)
T 3pxi_A 752 KTTAK 756 (758)
T ss_dssp EECC-
T ss_pred EEecC
Confidence 87654
No 3
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=100.00 E-value=1.1e-90 Score=866.29 Aligned_cols=735 Identities=40% Similarity=0.653 Sum_probs=641.6
Q ss_pred ccHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhcCCCcHHHHHHHHcCCChHHHHHHHHHhhcc-CCCCCCC--CCCCc
Q 002012 97 FTEKAWEGIVGAVDAARVNNQQVVETEHLMKALLEQKDGLARRILTKAGQDNTKVLQATEDFISK-QPKVTGA--TSGPI 173 (982)
Q Consensus 97 ft~~a~~~l~~A~~~A~~~~~~~v~~eHlLlaLl~~~~~~~~~iL~~~gv~~~~l~~~~~~~~~~-~~~~~~~--~~~~~ 173 (982)
||++++++|..|+++|+++||++|+|||||+|||+++ .+.++|+++|+|++.++++++..+++ .|...+. ...++
T Consensus 2 ~t~~a~~~l~~A~~~A~~~~h~~i~~eHLLlaLl~~~--~~~~iL~~~gvd~~~l~~~l~~~l~~~~p~~~~~~~~~~~~ 79 (758)
T 1r6b_X 2 LNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNP--SAREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQ 79 (758)
T ss_dssp BCHHHHHHHHHHHHHHHHTTBSEECHHHHHHHHTTSH--HHHHHHHHTTCCHHHHHHHHHHHHHHHSCBCCCSSSCCCCE
T ss_pred CCHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHcCc--HHHHHHHHcCCCHHHHHHHHHHHHhccCCCCCCccccCCCC
Confidence 9999999999999999999999999999999999864 48899999999999999999999988 6654331 24689
Q ss_pred cChhhHHHHHHHHHHHHHcCCCccCHHHHHHHHhc-CCcccccccccccCCHHHHHHHHHhhhccc------c--c--cc
Q 002012 174 VGSNFGLLLSNAQRIKKEMEDDFVSVEHLLLAFLS-DDRFGRLLFNDIRLNEKDLKDAVKAVRGHQ------R--V--TD 242 (982)
Q Consensus 174 ~s~~~~~vl~~A~~~a~~~g~~~I~~ehLllall~-~~~~a~~lL~~~gi~~~~l~~~i~~~~~~~------~--~--~~ 242 (982)
+|+.++++|+.|+.+|+.+|++||+++|||+||++ ..+.+.++|+.+|++.+.+.+.+....+.. . . ..
T Consensus 80 ~s~~~~~vl~~A~~~a~~~~~~~I~~ehlLlall~~~~~~a~~~L~~~gi~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~ 159 (758)
T 1r6b_X 80 PTLSFQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGTRKDEPTQSSDPGSQPNS 159 (758)
T ss_dssp ECHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHTTCTTCHHHHHHHHTTCCHHHHHHHHHTC------------------
T ss_pred cCHHHHHHHHHHHHHHHHcCCCEeeHHHHHHHHhccccchHHHHHHHcCCCHHHHHHHHHHhhccccccccccccccccc
Confidence 99999999999999999999999999999999995 456678999999999999998886542211 1 1 00
Q ss_pred CCCCchhHHHHHhhhhhHHHhhcCCCCCcccchHHHHHHHHHhccCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCC
Q 002012 243 QNPEGKYQALEKYGNDLTELARSGKLDPVIGRDDEIRRCIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPET 322 (982)
Q Consensus 243 ~~~~~~~~~l~~~~~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~ 322 (982)
..++..++.|++|+.+|++++++++++++||+++++++++++|.++.++|+||+||||||||++|+++++.+.++.+|..
T Consensus 160 ~~~~~~~~~l~~~~~~l~~~~~~~~~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~ 239 (758)
T 1r6b_X 160 EEQAGGEERLENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEV 239 (758)
T ss_dssp ---------CCSSSCBHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGG
T ss_pred cccccchhHHHHHhHhHHHHHhcCCCCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChh
Confidence 12223467789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEecccccccccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCC-chhhHHHHHHhhhcCCCeEE
Q 002012 323 LQNRKLISLDMASLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQS-GAMDASNMLKPMLGRGELRC 401 (982)
Q Consensus 323 l~~~~v~~l~~~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~-~~~~~~~~L~~~le~g~i~v 401 (982)
+.++.++.++++.+..+.++.|+++.+++.+++.+.. .+++||||||+|.+.+++... +..++.+.|+++++++.+.+
T Consensus 240 ~~~~~~~~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~-~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~~~~~~ 318 (758)
T 1r6b_X 240 MADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQ-DTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRV 318 (758)
T ss_dssp GTTCEEEECCCC---CCCCCSSCHHHHHHHHHHHHSS-SSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSCCCEE
T ss_pred hcCCEEEEEcHHHHhccccccchHHHHHHHHHHHHHh-cCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhCCCeEE
Confidence 9999999999999998889999999999999998875 356899999999998877653 57888999999999999999
Q ss_pred EEecCchhHhhhhhcChHHHhccceEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCCcchh
Q 002012 402 IGATTLNEYRNYIEKDPALERRFQQVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLPDKA 481 (982)
Q Consensus 402 I~at~~~~~~~~~~~d~al~rRf~~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~p~~a 481 (982)
|++||.++|.+++..|++|.+||+.+.|..|+.+++..||+.+...|+.++++.++++++..++.++.+|+.++++|+++
T Consensus 319 I~at~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~~~ 398 (758)
T 1r6b_X 319 IGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKA 398 (758)
T ss_dssp EEEECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHHH
T ss_pred EEEeCchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhhhccCCccchHHHHHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002012 482 IDLVDEAAAKLKMEITSKPIELDEIDRAVLKLEMEKLSLKNDTDKASKERLSKLEHDLNSLKQKQKELNDQWSREKDLMS 561 (982)
Q Consensus 482 ~~lld~a~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~l~~~~~~~~~~~l~~~~~e~~~l~~~~~~l~~~~~~e~~~~~ 561 (982)
++++++|++...+....
T Consensus 399 i~lld~a~~~~~~~~~~--------------------------------------------------------------- 415 (758)
T 1r6b_X 399 IDVIDEAGARARLMPVS--------------------------------------------------------------- 415 (758)
T ss_dssp HHHHHHHHHHHHHSSSC---------------------------------------------------------------
T ss_pred HHHHHHHHHHHhccccc---------------------------------------------------------------
Confidence 99999998654432100
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcHHHHHHhhhcchHHHHHHHHHHHHhHHHHHhcCCccccccCCHhHHHHHHHHhhCC
Q 002012 562 RIRSIKEEIDRVNLEMEAAERDYDLNRAAELKYGTMISLQRQLEEAEKNLSEFQKSGHSLLREEVTDLDIAEIVSKWTGI 641 (982)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~gi 641 (982)
.-...++.+++..+++.|+++
T Consensus 416 -----------------------------------------------------------~~~~~v~~~di~~~~~~~~~i 436 (758)
T 1r6b_X 416 -----------------------------------------------------------KRKKTVNVADIESVVARIARI 436 (758)
T ss_dssp -----------------------------------------------------------CCCCSCCHHHHHHHHHHHSCC
T ss_pred -----------------------------------------------------------ccCCccCHHHHHHHHHHhcCC
Confidence 012357888999999999999
Q ss_pred CCcccchhHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCC
Q 002012 642 PLSSLQQSEREKLVMLEEVLHKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTE 721 (982)
Q Consensus 642 ~~~~~~~~~~~~l~~l~~~l~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~ 721 (982)
|+..+...+...+..+.+.+...++||+++++.|..++...+.|+.+|.+|.+++||+||||||||++|+++|+.+ +
T Consensus 437 p~~~~~~~~~~~l~~l~~~l~~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l---~ 513 (758)
T 1r6b_X 437 PEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL---G 513 (758)
T ss_dssp CCCCSSSSHHHHHHHHHHHHTTTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH---T
T ss_pred CccccchhHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh---c
Confidence 9998888888889999999999999999999999999999999999999999999999999999999999999998 6
Q ss_pred CceEEEeccccccccccccccCCCCCccccccCCchhHHHhhCCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcE
Q 002012 722 NALVRIDMSEYMEKHSVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRT 801 (982)
Q Consensus 722 ~~~v~i~~s~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~ 801 (982)
.+++++||+++.+.+.++.++|.++||+|+.+++.+++.++.++++||||||||++++++++.|+++||+|.+++..|+.
T Consensus 514 ~~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~ 593 (758)
T 1r6b_X 514 IELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRK 593 (758)
T ss_dssp CEEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHTTHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEE
T ss_pred CCEEEEechhhcchhhHhhhcCCCCCCcCccccchHHHHHHhCCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCE
Confidence 89999999999999999999999999999999998999999999999999999999999999999999999999999999
Q ss_pred EecccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHH
Q 002012 802 VSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMN 881 (982)
Q Consensus 802 ~~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~ 881 (982)
++|.|++||+|||.+...+.+. .++... ......+.+.+++.|+|+|++|||.+|.|+||+.+++..|+...+.
T Consensus 594 ~~~~~~~iI~tsN~~~~~~~~~--~~g~~~----~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~ 667 (758)
T 1r6b_X 594 ADFRNVVLVMTTNAGVRETERK--SIGLIH----QDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIV 667 (758)
T ss_dssp EECTTEEEEEEECSSCC-----------------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHH
T ss_pred EecCCeEEEEecCcchhhhhhc--ccCccc----cchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHH
Confidence 9999999999999987654431 000000 1112345567778899999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEEeecCCCCCCCCCC
Q 002012 882 RVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAILKGDIKEEDSVIIDVDDSPSAKDLPPR 961 (982)
Q Consensus 882 ~~~~~~~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~l~~~la~~~l~~~~~~~~~i~v~~~~~~~~~~~~~~ 961 (982)
++..++...++.+.++++++++|+.++|++++|+|+|+++|++.+.+++++.++.+++..|+++.|++++. +
T Consensus 668 ~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~--------~ 739 (758)
T 1r6b_X 668 ELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVTVALDKE--------K 739 (758)
T ss_dssp HHHHHHHHTTEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHTHHHHHHHHHSTTTTCEEEEEEEEGG--------G
T ss_pred HHHHHHHHCCcEEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHHHHHHHHHHcCcCCCCCEEEEEEeCC--------c
Confidence 99888888877789999999999999999999999999999999999999999999999999999999731 1
Q ss_pred CceEEEeccCCC
Q 002012 962 NKLCIKKLESSS 973 (982)
Q Consensus 962 ~~l~~~~~~~~~ 973 (982)
+.++|....+.+
T Consensus 740 ~~~~~~~~~~~~ 751 (758)
T 1r6b_X 740 NELTYGFQSAQK 751 (758)
T ss_dssp TEEEEEEEETTC
T ss_pred eeEEEEEccccc
Confidence 248887755444
No 4
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=100.00 E-value=1.6e-61 Score=567.87 Aligned_cols=441 Identities=41% Similarity=0.691 Sum_probs=377.4
Q ss_pred CCcccccHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhcCCCcHHHHHHHHcCCChHHHHHHHHHhhccCCCCCCCCCC
Q 002012 92 ITPTEFTEKAWEGIVGAVDAARVNNQQVVETEHLMKALLEQKDGLARRILTKAGQDNTKVLQATEDFISKQPKVTGATSG 171 (982)
Q Consensus 92 ~~~~~ft~~a~~~l~~A~~~A~~~~~~~v~~eHlLlaLl~~~~~~~~~iL~~~gv~~~~l~~~~~~~~~~~~~~~~~~~~ 171 (982)
|||++||++++++|..|+++|+++||++|+|||||+|||.++++.+.++|.++|+|++.+++++...+++++... ..
T Consensus 1 mm~~~ft~~a~~al~~A~~~A~~~~h~~v~~eHLLlaLl~~~~~~~~~iL~~~gvd~~~l~~~l~~~l~~~~~~~---~~ 77 (468)
T 3pxg_A 1 MMFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEVESLIGRGQEMS---QT 77 (468)
T ss_dssp --CCCBCHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSCCSHHHHHHHHHTCCHHHHHHHHHTTSCCCCTTC---SS
T ss_pred CcchhhCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhccCcHHHHHHHHcCCCHHHHHHHHHHHhcccCCCC---CC
Confidence 799999999999999999999999999999999999999999999999999999999999999999998887542 34
Q ss_pred CccChhhHHHHHHHHHHHHHcCCCccCHHHHHHHHh-cCCcccccccccccCCHHHHHHHHHhhhcccccc----cCCCC
Q 002012 172 PIVGSNFGLLLSNAQRIKKEMEDDFVSVEHLLLAFL-SDDRFGRLLFNDIRLNEKDLKDAVKAVRGHQRVT----DQNPE 246 (982)
Q Consensus 172 ~~~s~~~~~vl~~A~~~a~~~g~~~I~~ehLllall-~~~~~a~~lL~~~gi~~~~l~~~i~~~~~~~~~~----~~~~~ 246 (982)
++||+.++++|+.|+.+|.++|++||+++|||+||+ +..+.+.++|+.+|++.+.+++.+....+..... ...+.
T Consensus 78 ~~~S~~~~~vL~~A~~~A~~~g~~~I~teHLLlaLl~~~~~~a~~iL~~~gv~~~~l~~~i~~~~~~~~~~~~~~~~~~~ 157 (468)
T 3pxg_A 78 IHYTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNETGSSAAGTNSN 157 (468)
T ss_dssp CEECHHHHHHHHHHHHHHHTTTCSSBCHHHHHHHHHHTCCSHHHHHHHHTTCCHHHHHHHHHTTCCCCCTTC-----CCS
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHhcccchHHHHHHHcCCCHHHHHHHHHHHhccCcccccccCcCCc
Confidence 889999999999999999999999999999999999 4557788999999999999999998887654321 12233
Q ss_pred chhHHHHHhhhhhHHHhhcCCCCCcccchHHHHHHHHHhccCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCC
Q 002012 247 GKYQALEKYGNDLTELARSGKLDPVIGRDDEIRRCIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNR 326 (982)
Q Consensus 247 ~~~~~l~~~~~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~ 326 (982)
...+.+++|+.+|++++++++++++||++++++++++++.++.++|+||+||||||||++|+++|+.+.++.+|..+.+.
T Consensus 158 ~~~~~l~~~~~~l~~~~r~~~ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~ 237 (468)
T 3pxg_A 158 ANTPTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDK 237 (468)
T ss_dssp THHHHHHSSCCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSC
T ss_pred cCchHHHHHHHHHHHHHhcCCCCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCC
Confidence 55788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecccccccccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCCCeEEEEecC
Q 002012 327 KLISLDMASLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRGELRCIGATT 406 (982)
Q Consensus 327 ~v~~l~~~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g~i~vI~at~ 406 (982)
+++.+|++ ..|.|+++.+++.+++.+.. .+++||||| +..++++.|++++++|.+++|++||
T Consensus 238 ~~~~l~~~-----~~~~g~~e~~~~~~~~~~~~-~~~~iLfiD------------~~~~a~~~L~~~L~~g~v~vI~at~ 299 (468)
T 3pxg_A 238 RVMTLDMG-----TKYRGEFEDRLKKVMDEIRQ-AGNIILFID------------AAIDASNILKPSLARGELQCIGATT 299 (468)
T ss_dssp CEECC---------------CTTHHHHHHHHHT-CCCCEEEEC------------C--------CCCTTSSSCEEEEECC
T ss_pred eEEEeeCC-----ccccchHHHHHHHHHHHHHh-cCCeEEEEe------------CchhHHHHHHHhhcCCCEEEEecCC
Confidence 99999987 46889999999999999886 467799999 2367889999999999999999999
Q ss_pred chhHhhhhhcChHHHhccceEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCCcchhhHHHH
Q 002012 407 LNEYRNYIEKDPALERRFQQVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLPDKAIDLVD 486 (982)
Q Consensus 407 ~~~~~~~~~~d~al~rRf~~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~p~~a~~lld 486 (982)
.++|++++.++++|.|||+.|.|+.|+.+++..||+.+..+|+.+|++.++++++..++.++.+|+.++++|+++++++|
T Consensus 300 ~~e~~~~~~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ll~ 379 (468)
T 3pxg_A 300 LDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLID 379 (468)
T ss_dssp TTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHhCccceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhccCCccchHHHHHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002012 487 EAAAKLKMEITSKPIELDEIDRAVLKLEMEKLSLKNDTDKASKERLSKLEHDLNSLKQKQKELNDQWSRE 556 (982)
Q Consensus 487 ~a~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~l~~~~~~~~~~~l~~~~~e~~~l~~~~~~l~~~~~~e 556 (982)
+|++.+++.....|..+..+++.+..++.+........+ -+++.+++.+...++.++.++..+|..+
T Consensus 380 ~a~~~~~~~~~~~p~~i~~l~~~i~~l~~~~~~~~~~~d---~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 446 (468)
T 3pxg_A 380 EAGSKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQE---FEKAASLRDTEQRLREQVEDTKKSWKEK 446 (468)
T ss_dssp HHHHHHHHHTTSCCSSTHHHHHHHHHHHHHHHHHHHHCC---SHHHHHHHHHHHHHHHHHHHHHSGGGHH
T ss_pred HHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhCcC---HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999888888766543322211 1345556666666666666666666643
No 5
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=1.2e-37 Score=378.93 Aligned_cols=458 Identities=22% Similarity=0.313 Sum_probs=297.5
Q ss_pred CCCCCcccchHHHHHHHHHh----c---------cCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEe
Q 002012 266 GKLDPVIGRDDEIRRCIQIL----S---------RRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLD 332 (982)
Q Consensus 266 ~~l~~liG~~~~i~~l~~~L----~---------~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~ 332 (982)
-+++++.|.++.++.+.+++ . ...+.++||+||||||||++|+++|.++ +.+++.++
T Consensus 201 v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el----------g~~~~~v~ 270 (806)
T 3cf2_A 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET----------GAFFFLIN 270 (806)
T ss_dssp CCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT----------TCEEEEEE
T ss_pred CChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh----------CCeEEEEE
Confidence 46788999888666665543 1 1356789999999999999999999988 89999999
Q ss_pred cccccccccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCc---hhhHHHHHHhhhc----CCCeEEEEec
Q 002012 333 MASLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSG---AMDASNMLKPMLG----RGELRCIGAT 405 (982)
Q Consensus 333 ~~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~---~~~~~~~L~~~le----~g~i~vI~at 405 (982)
++++. .+|.|+.+..++.+|..+.. ..|+||||||||.+.+.+.... ...+.+.|+..|+ ++.+.||++|
T Consensus 271 ~~~l~--sk~~gese~~lr~lF~~A~~-~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaT 347 (806)
T 3cf2_A 271 GPEIM--SKLAGESESNLRKAFEEAEK-NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAAT 347 (806)
T ss_dssp HHHHH--SSCTTHHHHHHHHHHHHHTT-SCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEEC
T ss_pred hHHhh--cccchHHHHHHHHHHHHHHH-cCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEec
Confidence 99998 45899999999999999876 6789999999999987654322 2345556665553 6789999999
Q ss_pred CchhHhhhhhcChHHHh--ccc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCCcchhh
Q 002012 406 TLNEYRNYIEKDPALER--RFQ-QVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLPDKAI 482 (982)
Q Consensus 406 ~~~~~~~~~~~d~al~r--Rf~-~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~p~~a~ 482 (982)
|..+ .+||+|+| ||+ .|+++.|+.+++.+||+.+...+... ++..+..++.. +..+.+.+..
T Consensus 348 N~~d-----~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~-----~dvdl~~lA~~-----T~GfsgaDL~ 412 (806)
T 3cf2_A 348 NRPN-----SIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-----DDVDLEQVANE-----THGHVGADLA 412 (806)
T ss_dssp SSTT-----TSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEEC-----TTCCHHHHHHH-----CCSCCHHHHH
T ss_pred CChh-----hcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCC-----cccCHHHHHHh-----cCCCCHHHHH
Confidence 9998 79999999 997 89999999999999998765543211 22235566666 4456678888
Q ss_pred HHHHHHHHHhhhhccCCccchHHHHHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002012 483 DLVDEAAAKLKMEITSKPIELDEIDRAVLKLEMEKLSLKNDTDKASKERLSKLEHDLNSLKQKQKELNDQWSREKDLMSR 562 (982)
Q Consensus 483 ~lld~a~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~l~~~~~~~~~~~l~~~~~e~~~l~~~~~~l~~~~~~e~~~~~~ 562 (982)
.|+.+|+..+..... ............ +.
T Consensus 413 ~Lv~eA~~~A~~r~~------------------~~i~~~~~~~~~--e~------------------------------- 441 (806)
T 3cf2_A 413 ALCSEAALQAIRKKM------------------DLIDLEDETIDA--EV------------------------------- 441 (806)
T ss_dssp HHHHHHHHHHHHHHH------------------HHGGGTCCCCSH--HH-------------------------------
T ss_pred HHHHHHHHHHHHhcc------------------ccccccccccch--hh-------------------------------
Confidence 888887754321100 000000000000 00
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcHHHHHHhhhcchHHHHHHHHHHHHhHHHHHhcCCccccccCCHhHHHHHHHHhhCCC
Q 002012 563 IRSIKEEIDRVNLEMEAAERDYDLNRAAELKYGTMISLQRQLEEAEKNLSEFQKSGHSLLREEVTDLDIAEIVSKWTGIP 642 (982)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~gi~ 642 (982)
+. .-.++.+|+...+.......
T Consensus 442 ------------------------------------------------~~----------~~~v~~~Df~~Al~~~~ps~ 463 (806)
T 3cf2_A 442 ------------------------------------------------MN----------SLAVTMDDFRWALSQSNPSA 463 (806)
T ss_dssp ------------------------------------------------HH----------HCEECTTHHHHHHSSSSCCC
T ss_pred ------------------------------------------------hc----------cceeeHHHHHHHHHhCCCcc
Confidence 00 00122223322222111000
Q ss_pred CcccchhHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHhcCC----CCCCCCCceEEeecCCCCchHHHHHHHHHHhc
Q 002012 643 LSSLQQSEREKLVMLEEVLHKRVIGQDIAVKSVADAIRRSRAGL----SDPARPIASFMFMGPTGVGKTELGKALADFLF 718 (982)
Q Consensus 643 ~~~~~~~~~~~l~~l~~~l~~~iiGq~~a~~~l~~~i~~~~~g~----~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~ 718 (982)
..... ......-+..+.|.+++++.|.+++....... .....|...+||+||||||||++|+++|..+
T Consensus 464 ~r~~~-------~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~- 535 (806)
T 3cf2_A 464 LRETV-------VEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC- 535 (806)
T ss_dssp CCCCC-------CBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT-
T ss_pred ccccc-------ccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHh-
Confidence 00000 00011235778899999999888875431100 0112333359999999999999999999998
Q ss_pred CCCCceEEEeccccccccccccccCCCCCccccccC--CchhHHHhhCCCeEEEEccccccCH--------------HHH
Q 002012 719 NTENALVRIDMSEYMEKHSVSRLVGAPPGYVGYEEG--GQLTEVVRRRPYSVVLFDEIEKAHQ--------------DVF 782 (982)
Q Consensus 719 ~~~~~~v~i~~s~~~~~~~~~~l~g~~~g~vg~~~~--~~l~~~l~~~~~~Vl~lDEidkl~~--------------~~~ 782 (982)
+.+|+.++++++... |+|..+. +.+++..++..+|||||||||.+.+ .+.
T Consensus 536 --~~~f~~v~~~~l~s~------------~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~ 601 (806)
T 3cf2_A 536 --QANFISIKGPELLTM------------WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVI 601 (806)
T ss_dssp --TCEEEECCHHHHHTT------------TCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHH
T ss_pred --CCceEEeccchhhcc------------ccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHH
Confidence 889999998887532 4554433 4567777888899999999998742 267
Q ss_pred HHHHHhhhcCceecCCCcEEecccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHh--cccc
Q 002012 783 NILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLN--RIDE 860 (982)
Q Consensus 783 ~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~--Rid~ 860 (982)
+.||..|+.-. ...+++||+|||.... ++|+++. |||.
T Consensus 602 ~~lL~~mdg~~---------~~~~V~vi~aTN~p~~-------------------------------lD~AllRpgRfd~ 641 (806)
T 3cf2_A 602 NQILTEMDGMS---------TKKNVFIIGATNRPDI-------------------------------IDPAILRPGRLDQ 641 (806)
T ss_dssp HHHHHHHHSSC---------SSSSEEEECC-CCSSS-------------------------------SCHHHHSTTTSCC
T ss_pred HHHHHHHhCCC---------CCCCEEEEEeCCCchh-------------------------------CCHhHcCCCcceE
Confidence 88999998411 1246889999997643 7889987 9999
Q ss_pred ccccCCCChhHHHHHHHHHHHHHHHHHHhCCCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHH
Q 002012 861 YIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAI 934 (982)
Q Consensus 861 ii~F~pl~~~~l~~il~~~l~~~~~~~~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~l~~~la~~~ 934 (982)
.|.|++++.++..+|++..+++ ....-.+ -++.|++. ...|.+.+|+.+++.....++-+.+
T Consensus 642 ~i~v~lPd~~~R~~il~~~l~~-------~~~~~~~---dl~~la~~--t~g~SGadi~~l~~~A~~~a~r~~~ 703 (806)
T 3cf2_A 642 LIYIPLPDEKSRVAILKANLRK-------SPVAKDV---DLEFLAKM--TNGFSGADLTEICQRACKLAIRESI 703 (806)
T ss_dssp EEEC-----CHHHHTTTTTSSC-------C--CCC---------------------CHHHHHHHHHHHHHHHHH
T ss_pred EEEECCcCHHHHHHHHHHHhcC-------CCCCCCC---CHHHHHHh--CCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999877653 1111111 24556653 2346668899999998888876544
No 6
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=100.00 E-value=1.6e-34 Score=321.61 Aligned_cols=306 Identities=63% Similarity=1.001 Sum_probs=273.8
Q ss_pred HHHHHHHHHHhhhcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEec
Q 002012 650 EREKLVMLEEVLHKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDM 729 (982)
Q Consensus 650 ~~~~l~~l~~~l~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~ 729 (982)
+.+.+..+.+.+.+.++||+.+++.+..++.....++.+|.+|..+++|+||||||||++|+++|+.+...+.+++.++|
T Consensus 4 ~~~~l~~l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~ 83 (311)
T 4fcw_A 4 EREKLLRLEEELHKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDM 83 (311)
T ss_dssp HHHHHHTHHHHHHTTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEG
T ss_pred HHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeec
Confidence 46678889999999999999999999999999999988898998889999999999999999999999877788999999
Q ss_pred cccccccccccccCCCCCccccccCCchhHHHhhCCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEE
Q 002012 730 SEYMEKHSVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVV 809 (982)
Q Consensus 730 s~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~ii 809 (982)
+.+........++|.+++++|+...+.+.+.+..++++||||||+|++++.+++.|+++|+++.+.+..+..+++++++|
T Consensus 84 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~ii 163 (311)
T 4fcw_A 84 TEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVI 163 (311)
T ss_dssp GGCCSTTHHHHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEE
T ss_pred ccccccccHHHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEE
Confidence 99987777788999999999988878899999999999999999999999999999999999999988899999999999
Q ss_pred EEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHHHHHHHHHh
Q 002012 810 IMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQ 889 (982)
Q Consensus 810 I~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~~~~~~~ 889 (982)
|+|||.+...+.+....... ++.+.+.+.+.+...|+|+|++||+.++.|.|++.+++..|+...+.++...+..
T Consensus 164 I~ttn~~~~~i~~~~~~~~~-----~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~ 238 (311)
T 4fcw_A 164 IMTSNLGSPLILEGLQKGWP-----YERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAE 238 (311)
T ss_dssp EEEESTTHHHHHTTTTSCCC-----SSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHT
T ss_pred EEecccCHHHHHhhhccccc-----HHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999987766653222111 2244555666667889999999999999999999999999999999999888877
Q ss_pred CCCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEEeecCCCCCCCCCCCceEEEec
Q 002012 890 KKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAILKGDIKEEDSVIIDVDDSPSAKDLPPRNKLCIKKL 969 (982)
Q Consensus 890 ~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~l~~~la~~~l~~~~~~~~~i~v~~~~~~~~~~~~~~~~l~~~~~ 969 (982)
.+..+.++++++++|..++|++..|+|+|++++++.+..++++.++.+++++|++|.|+++ +++++|+..
T Consensus 239 ~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i~~~~~~~~~~i~i~~~----------~~~~~~~~~ 308 (311)
T 4fcw_A 239 KRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKILAGEVKEGDRVQVDVG----------PAGLVFAVP 308 (311)
T ss_dssp TTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHHHHHHHHTSSCTTCEEEEEEC----------SSSEEEECC
T ss_pred CCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEE----------CCeEEEEec
Confidence 6777899999999999999987889999999999999999999999999999999999999 678888764
Q ss_pred c
Q 002012 970 E 970 (982)
Q Consensus 970 ~ 970 (982)
.
T Consensus 309 ~ 309 (311)
T 4fcw_A 309 A 309 (311)
T ss_dssp T
T ss_pred C
Confidence 3
No 7
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.96 E-value=2.3e-30 Score=321.31 Aligned_cols=457 Identities=22% Similarity=0.314 Sum_probs=289.8
Q ss_pred hcCCCCCcccchHHHHHHHHHhcc-------------CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEE
Q 002012 264 RSGKLDPVIGRDDEIRRCIQILSR-------------RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLIS 330 (982)
Q Consensus 264 ~~~~l~~liG~~~~i~~l~~~L~~-------------~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~ 330 (982)
.+-.+++++|.++.++.+.+.+.. ..+.+++|+||||||||++|++|+..+ +..++.
T Consensus 199 ~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l----------~~~~i~ 268 (806)
T 1ypw_A 199 NEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET----------GAFFFL 268 (806)
T ss_dssp SSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTT----------TCEEEE
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHc----------CCcEEE
Confidence 345788999999988888776642 456689999999999999999999987 788999
Q ss_pred EecccccccccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCc---hhhHHHHHHhhhc----CCCeEEEE
Q 002012 331 LDMASLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSG---AMDASNMLKPMLG----RGELRCIG 403 (982)
Q Consensus 331 l~~~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~---~~~~~~~L~~~le----~g~i~vI~ 403 (982)
+++.++.. .+.|+.+..+..+|+.+.. ..++|+||||++.+...+.... ...+.+.|+..++ +..+.+|+
T Consensus 269 v~~~~l~~--~~~g~~~~~l~~vf~~a~~-~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~ 345 (806)
T 1ypw_A 269 INGPEIMS--KLAGESESNLRKAFEEAEK-NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMA 345 (806)
T ss_dssp EEHHHHSS--SSTTHHHHHHHHHHHHHHH-HCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEE
T ss_pred EEchHhhh--hhhhhHHHHHHHHHHHHHh-cCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEec
Confidence 99888874 4789999999999999876 4578999999999987654322 2334555666554 56889999
Q ss_pred ecCchhHhhhhhcChHHHh--ccc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCCcch
Q 002012 404 ATTLNEYRNYIEKDPALER--RFQ-QVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLPDK 480 (982)
Q Consensus 404 at~~~~~~~~~~~d~al~r--Rf~-~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~p~~ 480 (982)
+||..+ .+|+++.+ ||. .+.+..|+.+++..||+.+..++.... +..+..++..+. .+...+
T Consensus 346 atn~~~-----~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~-----~~~l~~la~~t~-----g~~g~d 410 (806)
T 1ypw_A 346 ATNRPN-----SIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLAD-----DVDLEQVANETH-----GHVGAD 410 (806)
T ss_dssp ECSCTT-----TSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCT-----TCCTHHHHHSCS-----SCCHHH
T ss_pred ccCCch-----hcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcc-----cchhHHHHHhhc-----CcchHH
Confidence 999987 78999998 996 789999999999999987665532211 112333444433 233344
Q ss_pred hhHHHHHHHHHhhhhccCCccchHHHHHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002012 481 AIDLVDEAAAKLKMEITSKPIELDEIDRAVLKLEMEKLSLKNDTDKASKERLSKLEHDLNSLKQKQKELNDQWSREKDLM 560 (982)
Q Consensus 481 a~~lld~a~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~l~~~~~~~~~~~l~~~~~e~~~l~~~~~~l~~~~~~e~~~~ 560 (982)
...++.++.......... ...+. ...
T Consensus 411 l~~l~~ea~~~a~r~~~~-~i~~~------------------------~~~----------------------------- 436 (806)
T 1ypw_A 411 LAALCSEAALQAIRKKMD-LIDLE------------------------DET----------------------------- 436 (806)
T ss_dssp HHHHHHHHHHHHHHHTTT-TTSCH------------------------HHH-----------------------------
T ss_pred HHHHHHHHHHHHHhhhcc-ccchh------------------------hhc-----------------------------
Confidence 444443333221100000 00000 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHhhhcchHHHHHHHHHHHHhHHHHHhcCCccccccCCHhHHHHHHHHhhC
Q 002012 561 SRIRSIKEEIDRVNLEMEAAERDYDLNRAAELKYGTMISLQRQLEEAEKNLSEFQKSGHSLLREEVTDLDIAEIVSKWTG 640 (982)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~g 640 (982)
... ... ....++..++...+.....
T Consensus 437 ------------~~~---------------------------------~~~----------~~~~v~~~d~~~al~~~~~ 461 (806)
T 1ypw_A 437 ------------IDA---------------------------------EVM----------NSLAVTMDDFRWALSQSNP 461 (806)
T ss_dssp ------------CCH---------------------------------HHH----------TTCCCCTTHHHHHHHHSCC
T ss_pred ------------cch---------------------------------hhh----------hhhhhhhhhhhccccccCc
Confidence 000 000 0011222333333322211
Q ss_pred CCCcccchhHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHhcC----CCCCCCCCceEEeecCCCCchHHHHHHHHHH
Q 002012 641 IPLSSLQQSEREKLVMLEEVLHKRVIGQDIAVKSVADAIRRSRAG----LSDPARPIASFMFMGPTGVGKTELGKALADF 716 (982)
Q Consensus 641 i~~~~~~~~~~~~l~~l~~~l~~~iiGq~~a~~~l~~~i~~~~~g----~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~ 716 (982)
...... +.......+.++.|++.+++.|.+.+...... ....-.+..++||+||||||||++|+++|..
T Consensus 462 s~~~~~-------~~~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~ 534 (806)
T 1ypw_A 462 SALRET-------VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 534 (806)
T ss_dssp CCCCCC-------CCCCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHH
T ss_pred hhhhhh-------cccCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHH
Confidence 100000 00011223578999999999888776432110 0111233446999999999999999999999
Q ss_pred hcCCCCceEEEeccccccccccccccCCCCCccccccC--CchhHHHhhCCCeEEEEccccccC--------------HH
Q 002012 717 LFNTENALVRIDMSEYMEKHSVSRLVGAPPGYVGYEEG--GQLTEVVRRRPYSVVLFDEIEKAH--------------QD 780 (982)
Q Consensus 717 l~~~~~~~v~i~~s~~~~~~~~~~l~g~~~g~vg~~~~--~~l~~~l~~~~~~Vl~lDEidkl~--------------~~ 780 (982)
+ +.+++.++++++... |+|..+. +.+++..+...++||||||||.+. ..
T Consensus 535 ~---~~~~i~v~~~~l~~~------------~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~ 599 (806)
T 1ypw_A 535 C---QANFISIKGPELLTM------------WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADR 599 (806)
T ss_dssp H---TCCCCCCCCSSSTTC------------CTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHH
T ss_pred h---CCCEEEEechHhhhh------------hcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHH
Confidence 8 678888888876432 3333222 245666667777999999999862 34
Q ss_pred HHHHHHHhhhcCceecCCCcEEecccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHh--cc
Q 002012 781 VFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLN--RI 858 (982)
Q Consensus 781 ~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~--Ri 858 (982)
+++.|+..|+... ...+++||+|||.... ++|++++ ||
T Consensus 600 v~~~LL~~ld~~~---------~~~~v~vI~tTN~~~~-------------------------------ld~allrpgRf 639 (806)
T 1ypw_A 600 VINQILTEMDGMS---------TKKNVFIIGATNRPDI-------------------------------IDPAILRPGRL 639 (806)
T ss_dssp HHHHHHTTCC---------------CCBCCCCCBSCGG-------------------------------GSCTTSSGGGT
T ss_pred HHHHHHHHHhccc---------ccCCeEEEEecCCccc-------------------------------CCHHHhCcccc
Confidence 6788888887421 2357899999997643 6788887 99
Q ss_pred ccccccCCCChhHHHHHHHHHHHHHHHHHHhCCCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHH
Q 002012 859 DEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIA 931 (982)
Q Consensus 859 d~ii~F~pl~~~~l~~il~~~l~~~~~~~~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~l~~~la 931 (982)
+..|.|++++.++..+|++..+.... ..-.++ ++.|+.. ...|..+.|+.+++.....++-
T Consensus 640 ~~~i~~~~p~~~~r~~Il~~~l~~~~-------~~~~~~---l~~la~~--t~g~sgadi~~l~~~a~~~a~~ 700 (806)
T 1ypw_A 640 DQLIYIPLPDEKSRVAILKANLRKSP-------VAKDVD---LEFLAKM--TNGFSGADLTEICQRACKLAIR 700 (806)
T ss_dssp TSCCCCCCCCCSHHHHHTTTTTSCC-----------CCC---CSCSCGG--GSSSCCHHHHHHHHHHHHHHHS
T ss_pred CceeecCCCCHHHHHHHHHHHhccCC-------CCcccC---HHHHHHh--ccccCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999987765411 000011 1222222 2235567888888876655543
No 8
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.93 E-value=2.8e-26 Score=260.84 Aligned_cols=279 Identities=22% Similarity=0.359 Sum_probs=190.4
Q ss_pred HHHHHhhhcccccchHHHHHHHHHHHH----HhcCCCC--CCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEe
Q 002012 655 VMLEEVLHKRVIGQDIAVKSVADAIRR----SRAGLSD--PARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRID 728 (982)
Q Consensus 655 ~~l~~~l~~~iiGq~~a~~~l~~~i~~----~~~g~~~--~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~ 728 (982)
..+.+.+.+.|+||+.+++.|..++.. .+.+... ...+..++||+||||||||++|++||+.+ +.+|+.++
T Consensus 7 ~~l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~---~~~~~~~~ 83 (363)
T 3hws_A 7 HEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL---DVPFTMAD 83 (363)
T ss_dssp HHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT---TCCEEEEE
T ss_pred HHHHHHHHhhccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc---CCCEEEec
Confidence 345667778899999999999988842 2222221 11234569999999999999999999998 78999999
Q ss_pred ccccccccccccccCCCCCccccccCCchhHHHhh-------CCCeEEEEccccccCHH--------------HHHHHHH
Q 002012 729 MSEYMEKHSVSRLVGAPPGYVGYEEGGQLTEVVRR-------RPYSVVLFDEIEKAHQD--------------VFNILLQ 787 (982)
Q Consensus 729 ~s~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~-------~~~~Vl~lDEidkl~~~--------------~~~~Ll~ 787 (982)
|+++.. .+|+|....+.+.+.+.. ++++||||||||++++. +++.|++
T Consensus 84 ~~~l~~-----------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~ 152 (363)
T 3hws_A 84 ATTLTE-----------AGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLK 152 (363)
T ss_dssp HHHHTT-----------CHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHH
T ss_pred hHHhcc-----------cccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHH
Confidence 987642 235555434445555443 35679999999999876 9999999
Q ss_pred hhhcCce---ecCCCcEEec--------ccEEEEEecCC-ChHHHHHh-hhh------cccch----HHHHHHHHHHH--
Q 002012 788 LLDDGRI---TDSQGRTVSF--------TNCVVIMTSNI-GSHYILET-LQS------VQDSK----EAVYEVMKKQV-- 842 (982)
Q Consensus 788 ~le~g~~---~d~~g~~~~~--------~~~iiI~tsn~-~~~~i~~~-~~~------~~~~~----~~~~~~~~~~~-- 842 (982)
+|| |.+ .+..|+..++ +|.+||+++|. +.+.++.. +.. ..... ......+.+.+
T Consensus 153 ~le-g~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~ 231 (363)
T 3hws_A 153 LIE-GTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEP 231 (363)
T ss_dssp HHH-CC----------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCH
T ss_pred Hhc-CceeeccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCH
Confidence 999 553 3344554444 45555555554 66555442 110 00000 00011122211
Q ss_pred HHHHHhhcChHHHhccccccccCCCChhHHHHHHHH----HHHHHHHHHHhCCCCccCCHHHHHHHHhcCCCCCCCchHH
Q 002012 843 VELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEI----QMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPV 918 (982)
Q Consensus 843 ~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~----~l~~~~~~~~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L 918 (982)
.+..+..|+|+|++||+.++.|.|++.+++.+|+.. .+.++.+.+...++.+.++++++++|+.++|++++|+|+|
T Consensus 232 ~~l~~~~~~~~l~~R~~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L 311 (363)
T 3hws_A 232 EDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGL 311 (363)
T ss_dssp HHHHHHTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTH
T ss_pred HHHHHcCCCHHHhcccCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHH
Confidence 223445699999999999999999999999999998 7777777777778889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCEEEEEeec
Q 002012 919 KRVIQQLVENEIAVAILKGDIKEEDSVIIDVDD 951 (982)
Q Consensus 919 ~~~i~~~l~~~la~~~l~~~~~~~~~i~v~~~~ 951 (982)
+++|++.+.+++++..-.. .-..+.|+.+.
T Consensus 312 ~~~ie~~~~~~l~~~~~~~---~~~~~~I~~~~ 341 (363)
T 3hws_A 312 RSIVEAALLDTMYDLPSME---DVEKVVIDESV 341 (363)
T ss_dssp HHHHHHHHHHHHHSTTTCC---CSEEEECHHHH
T ss_pred HHHHHHHHHHHHHhccccc---CCceeEEcHHH
Confidence 9999999998886532111 11466666654
No 9
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=99.91 E-value=3e-24 Score=210.91 Aligned_cols=144 Identities=22% Similarity=0.297 Sum_probs=134.2
Q ss_pred cCCcccccHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhcCCCcHHHHHHHHcCCChHHHHHHHHHhhccCCCCCCCCC
Q 002012 91 QITPTEFTEKAWEGIVGAVDAARVNNQQVVETEHLMKALLEQKDGLARRILTKAGQDNTKVLQATEDFISKQPKVTGATS 170 (982)
Q Consensus 91 ~~~~~~ft~~a~~~l~~A~~~A~~~~~~~v~~eHlLlaLl~~~~~~~~~iL~~~gv~~~~l~~~~~~~~~~~~~~~~~~~ 170 (982)
+.||++||++++++|..|+++|+++||++|+|||||+|||+++++.+.++|+++|+|++.+++.+...+++.|... .+
T Consensus 1 ~~m~~~~t~~~~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~~~~~iL~~~gv~~~~l~~~l~~~l~~~~~~~--~~ 78 (146)
T 3fh2_A 1 QAMFERFTDRARRVIVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESMGISLDAVRQEVEEIIGQGSQPT--TG 78 (146)
T ss_dssp CGGGGGBCHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCCSHHHHHHHHTTCCHHHHHHHHHHHHCCCSCCC--CS
T ss_pred CchhhhcCHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHhCCCChHHHHHHHcCCCHHHHHHHHHHHhccCCCCC--cC
Confidence 4689999999999999999999999999999999999999999999999999999999999999999999988643 24
Q ss_pred CCccChhhHHHHHHHHHHHHHcCCCccCHHHHHHHHh-cCCcccccccccccCCHHHHHHHHHhhhc
Q 002012 171 GPIVGSNFGLLLSNAQRIKKEMEDDFVSVEHLLLAFL-SDDRFGRLLFNDIRLNEKDLKDAVKAVRG 236 (982)
Q Consensus 171 ~~~~s~~~~~vl~~A~~~a~~~g~~~I~~ehLllall-~~~~~a~~lL~~~gi~~~~l~~~i~~~~~ 236 (982)
.+++|+.++++|+.|+.+|.++|++||+++|||+||+ ++++.+.++|+++|++.+.+++.|....+
T Consensus 79 ~~~~s~~~~~vL~~A~~~a~~~~~~~i~~eHlLlall~~~~~~a~~iL~~~gv~~~~l~~~l~~~~g 145 (146)
T 3fh2_A 79 HIPFTPRAKKVLELSLREGLQMGHKYIGTEFLLLGLIREGEGVAAQVLVKLGADLPRVRQQVIQLLS 145 (146)
T ss_dssp CCCBCHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCSSHHHHHHHHHTCCHHHHHHHHHHHHC
T ss_pred CCcCCHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHhCCCcHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 6899999999999999999999999999999999999 45677889999999999999999987765
No 10
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=99.91 E-value=2.9e-24 Score=211.87 Aligned_cols=147 Identities=22% Similarity=0.316 Sum_probs=127.3
Q ss_pred CCcccccHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhcCCCcHHHHHHHHcCCChHHHHHHHHHhhccCCCCCCCCCC
Q 002012 92 ITPTEFTEKAWEGIVGAVDAARVNNQQVVETEHLMKALLEQKDGLARRILTKAGQDNTKVLQATEDFISKQPKVTGATSG 171 (982)
Q Consensus 92 ~~~~~ft~~a~~~l~~A~~~A~~~~~~~v~~eHlLlaLl~~~~~~~~~iL~~~gv~~~~l~~~~~~~~~~~~~~~~~~~~ 171 (982)
||+++||++++++|..|+.+|+++||++|+|||||+|||+++++.+.++|+++|+|++.++..++..+++.|...+..+.
T Consensus 1 M~~~~~t~~~~~~l~~A~~~A~~~~~~~i~~eHlLlaLl~~~~~~~~~iL~~~g~~~~~l~~~l~~~l~~~p~~~~~~~~ 80 (148)
T 1khy_A 1 MRLDRLTNKFQLALADAQSLALGHDNQFIEPLHLMSALLNQEGGSVSPLLTSAGINAGQLRTDINQALNRLPQVEGTGGD 80 (148)
T ss_dssp ---CCBCHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHTCTTCSHHHHHHHHTCCHHHHHHHHHHHHTTSCCC------
T ss_pred CChhhhhHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHcCCCchHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCCCCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999998876543245
Q ss_pred CccChhhHHHHHHHHHHHHHcCCCccCHHHHHHHHhcCCcccccccccccCCHHHHHHHHHhhhccc
Q 002012 172 PIVGSNFGLLLSNAQRIKKEMEDDFVSVEHLLLAFLSDDRFGRLLFNDIRLNEKDLKDAVKAVRGHQ 238 (982)
Q Consensus 172 ~~~s~~~~~vl~~A~~~a~~~g~~~I~~ehLllall~~~~~a~~lL~~~gi~~~~l~~~i~~~~~~~ 238 (982)
+++|+.++++|+.|+.+|..+|++||+++|||+||+++++.+.++|+.+|++.+.+++.+..++++.
T Consensus 81 ~~~s~~~~~vl~~A~~~a~~~~~~~i~~ehlLlall~~~~~~~~~L~~~gi~~~~l~~~l~~~rg~~ 147 (148)
T 1khy_A 81 VQPSQDLVRVLNLCDKLAQKRGDNFISSELFVLAALESRGTLADILKAAGATTANITQAIEQMRGGE 147 (148)
T ss_dssp -CBCHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHTSCHHHHHHHHHTTCCHHHHHHHHHC-----
T ss_pred cCcCHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHcCCcHHHHHHHHcCCCHHHHHHHHHHHHCCC
Confidence 8899999999999999999999999999999999996566778999999999999999998877643
No 11
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.90 E-value=7.3e-24 Score=242.12 Aligned_cols=280 Identities=21% Similarity=0.337 Sum_probs=185.2
Q ss_pred HHHHHHhhhcccccchHHHHHHHHHH----HHHhcCC-------C----------CCCCCCceEEeecCCCCchHHHHHH
Q 002012 654 LVMLEEVLHKRVIGQDIAVKSVADAI----RRSRAGL-------S----------DPARPIASFMFMGPTGVGKTELGKA 712 (982)
Q Consensus 654 l~~l~~~l~~~iiGq~~a~~~l~~~i----~~~~~g~-------~----------~~~~p~~~lLf~Gp~GtGKT~lA~~ 712 (982)
...+.+.|.+.|+||+++++.|..++ .+.+.|. . ....+..++||+||||||||++|++
T Consensus 12 ~~~l~~~L~~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~ 91 (376)
T 1um8_A 12 PKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQT 91 (376)
T ss_dssp HHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHH
T ss_pred HHHHHHHHhhHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHH
Confidence 34677888899999999999999888 3333222 0 0112334699999999999999999
Q ss_pred HHHHhcCCCCceEEEeccccccccccccccCCCCCccccccCCchhHHHh-------hCCCeEEEEccccccCHH-----
Q 002012 713 LADFLFNTENALVRIDMSEYMEKHSVSRLVGAPPGYVGYEEGGQLTEVVR-------RRPYSVVLFDEIEKAHQD----- 780 (982)
Q Consensus 713 la~~l~~~~~~~v~i~~s~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~l~-------~~~~~Vl~lDEidkl~~~----- 780 (982)
+|+.+ +.+++.++|+.+.. .+|.|....+.+...+. .++++||||||+|++++.
T Consensus 92 la~~l---~~~~~~~~~~~~~~-----------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~ 157 (376)
T 1um8_A 92 LAKHL---DIPIAISDATSLTE-----------AGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRS 157 (376)
T ss_dssp HHHHT---TCCEEEEEGGGCC-------------------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------
T ss_pred HHHHh---CCCEEEecchhhhh-----------cCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCc
Confidence 99998 67899999987642 23445443333444432 346789999999999988
Q ss_pred ---------HHHHHHHhhhcCce--ecCCCcE--------EecccEEEEEecCCC-hHHHH-Hhhhh---c--ccchH--
Q 002012 781 ---------VFNILLQLLDDGRI--TDSQGRT--------VSFTNCVVIMTSNIG-SHYIL-ETLQS---V--QDSKE-- 832 (982)
Q Consensus 781 ---------~~~~Ll~~le~g~~--~d~~g~~--------~~~~~~iiI~tsn~~-~~~i~-~~~~~---~--~~~~~-- 832 (982)
+++.|+++||.+.+ .+..|+. +..+|++||+|+|.. .+..+ ..+.. + .....
T Consensus 158 ~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~ 237 (376)
T 1um8_A 158 ITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKK 237 (376)
T ss_dssp ------CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTT
T ss_pred eecccchHHHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhcc
Confidence 99999999997753 3333333 344667777777732 11111 00000 0 00000
Q ss_pred HHHHHHHHHH-HHHHHhhcChHHHhccccccccCCCChhHHHHHHH----HHHHHHHHHHHhCCCCccCCHHHHHHHHhc
Q 002012 833 AVYEVMKKQV-VELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVE----IQMNRVKDRLKQKKIDLHYTKEAVTLLGIL 907 (982)
Q Consensus 833 ~~~~~~~~~~-~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~----~~l~~~~~~~~~~~~~l~i~~~a~~~L~~~ 907 (982)
.....+.... .+.....|.|+|++||+.++.|+||+.+++.+|+. ..+.++...+...+..+.++++++++|+.+
T Consensus 238 ~~~~~~~~~~~~~l~~~~~~p~l~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~ 317 (376)
T 1um8_A 238 EQEAILHLVQTHDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQL 317 (376)
T ss_dssp TTTTSGGGCCHHHHHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHH
T ss_pred chhHHHhhcCHHHHhhcCCChHHhcCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHH
Confidence 0000000000 01123568999999999999999999999999998 456666666666677789999999999999
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEEeec
Q 002012 908 GFDPNFGARPVKRVIQQLVENEIAVAILKGDIKEEDSVIIDVDD 951 (982)
Q Consensus 908 ~~~~~~gaR~L~~~i~~~l~~~la~~~l~~~~~~~~~i~v~~~~ 951 (982)
+|+++.|+|+|++++++.+..++++..-. .+..+.|+.++
T Consensus 318 ~~~~~~~~R~L~~~le~~~~~~~~~~~~~----~~~~~~i~~~~ 357 (376)
T 1um8_A 318 ALERKTGARGLRAIIEDFCLDIMFDLPKL----KGSEVRITKDC 357 (376)
T ss_dssp HHHTTCTGGGHHHHHHHHHHHHHHTGGGG----TTSEEEECHHH
T ss_pred hcccccCcHHHHHHHHHHHHHHHhhccCC----CCCEEEEeHHH
Confidence 99888899999999999999988765432 34677777765
No 12
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=99.90 E-value=9.4e-24 Score=207.07 Aligned_cols=141 Identities=19% Similarity=0.346 Sum_probs=130.8
Q ss_pred CCcccccHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhcCCCcHHHHHHHHcCCChHHHHHHHHHhhccCCCCCCCCCC
Q 002012 92 ITPTEFTEKAWEGIVGAVDAARVNNQQVVETEHLMKALLEQKDGLARRILTKAGQDNTKVLQATEDFISKQPKVTGATSG 171 (982)
Q Consensus 92 ~~~~~ft~~a~~~l~~A~~~A~~~~~~~v~~eHlLlaLl~~~~~~~~~iL~~~gv~~~~l~~~~~~~~~~~~~~~~~~~~ 171 (982)
-+|++||++++++|..|+++|+++||++|+|||||+|||++++|.+.++|+++|+|++.+++.++..+++.|. .+ ..
T Consensus 3 ~~~~~~T~~a~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~~~~~iL~~~gvd~~~l~~~l~~~l~~~~~-~~--~~ 79 (145)
T 3fes_A 3 ANFNRFTQRAKKAIDLAFESAKSLGHNIVGSEHILLGLLREEEGIAAKVLSKVGFTEAYLEGKIVDMEGKGEE-IS--ED 79 (145)
T ss_dssp -CCCCBCHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHCSSHHHHHHHHHTCCHHHHHHHHHHHHCCCSC-CC--SC
T ss_pred CcccccCHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCCChHHHHHHHcCCCHHHHHHHHHHHHhcCCC-CC--CC
Confidence 3678999999999999999999999999999999999999999999999999999999999999999999886 32 56
Q ss_pred CccChhhHHHHHHHHHHHHHcCCCccCHHHHHHHHhc-CCcccccccccccCCHHHHHHHHHhhh
Q 002012 172 PIVGSNFGLLLSNAQRIKKEMEDDFVSVEHLLLAFLS-DDRFGRLLFNDIRLNEKDLKDAVKAVR 235 (982)
Q Consensus 172 ~~~s~~~~~vl~~A~~~a~~~g~~~I~~ehLllall~-~~~~a~~lL~~~gi~~~~l~~~i~~~~ 235 (982)
+++|+.++++|+.|+.+|+++|++||+++|||+||++ +++.+.++|+++|++.+.+++.|.+..
T Consensus 80 ~~~s~~~~~vl~~A~~~A~~~~~~~v~~eHlLlAll~~~~~~a~~iL~~~gv~~~~l~~~i~~~~ 144 (145)
T 3fes_A 80 IVLSPRSKQILELSGMFANKLKTNYIGTEHILLAIIQEGEGIANKILNYAGVNDRTLAQLTIDMM 144 (145)
T ss_dssp CEECHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhCCCcHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 8999999999999999999999999999999999995 456788999999999999999987654
No 13
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=99.90 E-value=1.3e-23 Score=207.73 Aligned_cols=144 Identities=17% Similarity=0.306 Sum_probs=128.9
Q ss_pred CCcccccHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhcCCCcHHHHHHHHcCCChHHHHHHHHHhhccCCCCCCCCCC
Q 002012 92 ITPTEFTEKAWEGIVGAVDAARVNNQQVVETEHLMKALLEQKDGLARRILTKAGQDNTKVLQATEDFISKQPKVTGATSG 171 (982)
Q Consensus 92 ~~~~~ft~~a~~~l~~A~~~A~~~~~~~v~~eHlLlaLl~~~~~~~~~iL~~~gv~~~~l~~~~~~~~~~~~~~~~~~~~ 171 (982)
||+++||++++++|..|+++|+++||++|+|||||+|||+++++.+.++|+++|+|++.+++.++..+++.|... +.
T Consensus 1 M~~~~~t~~~~~al~~A~~~A~~~~h~~i~~eHlLlaLl~~~~~~~~~iL~~~g~~~~~l~~~l~~~l~~~~~~~---~~ 77 (150)
T 2y1q_A 1 MMFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEVESLIGRAQEMS---QT 77 (150)
T ss_dssp ---CCBCHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHCSSHHHHHHHHTTCCHHHHHHHHHHHHCCC--------C
T ss_pred CcchhhCHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCCCHHHHHHHHcCCCHHHHHHHHHHHhccCCccc---cc
Confidence 789999999999999999999999999999999999999999999999999999999999999999999988654 35
Q ss_pred CccChhhHHHHHHHHHHHHHcCCCccCHHHHHHHHhc-CCcccccccccccCCHHHHHHHHHhhhccc
Q 002012 172 PIVGSNFGLLLSNAQRIKKEMEDDFVSVEHLLLAFLS-DDRFGRLLFNDIRLNEKDLKDAVKAVRGHQ 238 (982)
Q Consensus 172 ~~~s~~~~~vl~~A~~~a~~~g~~~I~~ehLllall~-~~~~a~~lL~~~gi~~~~l~~~i~~~~~~~ 238 (982)
++||+.++++|+.|+.+|..+|++||+++|||+||++ +.+.+.++|+.+|++.+.+++.+...+++.
T Consensus 78 ~~~s~~~~~vL~~A~~~A~~~~~~~i~~ehlLlall~~~~~~a~~~L~~~gi~~~~l~~~i~~~~g~~ 145 (150)
T 2y1q_A 78 IHYTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGNN 145 (150)
T ss_dssp CEECHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCCSHHHHHHHHTTCCHHHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHhCCCcHHHHHHHHcCCCHHHHHHHHHHHHCCC
Confidence 8999999999999999999999999999999999994 446667999999999999999998887654
No 14
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.90 E-value=1.6e-23 Score=239.17 Aligned_cols=160 Identities=19% Similarity=0.297 Sum_probs=122.3
Q ss_pred HHHhhC-CCeEEEEccccccCH------------HHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCChHHHHHhhh
Q 002012 759 EVVRRR-PYSVVLFDEIEKAHQ------------DVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQ 825 (982)
Q Consensus 759 ~~l~~~-~~~Vl~lDEidkl~~------------~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~i~~~~~ 825 (982)
+++.++ +++|+++|||||+.. .+|++||++||...... ....++.++++||+|+......
T Consensus 243 ~ai~~ae~~~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~-~~~~~d~~~ilfI~~gaf~~~~------ 315 (444)
T 1g41_A 243 KAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVST-KHGMVKTDHILFIASGAFQVAR------ 315 (444)
T ss_dssp HHHHHHHHHCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEE-TTEEEECTTCEEEEEECCSSCC------
T ss_pred HHHHHhccCCeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhccccccc-ccceecCCcEEEEeccccccCC------
Confidence 444444 456999999999953 38999999999765554 3356889999999997432110
Q ss_pred hcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHH----HHHHHHHHHHHhCCCCccCCHHHH
Q 002012 826 SVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVE----IQMNRVKDRLKQKKIDLHYTKEAV 901 (982)
Q Consensus 826 ~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~----~~l~~~~~~~~~~~~~l~i~~~a~ 901 (982)
. ..+.|+|++||+.+|.|++|+.+++.+|+. ..+.++...+...++.+.++++|+
T Consensus 316 ----~-----------------~dlipel~~R~~i~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al 374 (444)
T 1g41_A 316 ----P-----------------SDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAV 374 (444)
T ss_dssp ----G-----------------GGSCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHH
T ss_pred ----h-----------------hhcchHHhcccceeeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHH
Confidence 0 015689999999889999999999999994 345666677777889999999999
Q ss_pred HHHHhcC-----CCCCCCchHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEEee
Q 002012 902 TLLGILG-----FDPNFGARPVKRVIQQLVENEIAVAILKGDIKEEDSVIIDVD 950 (982)
Q Consensus 902 ~~L~~~~-----~~~~~gaR~L~~~i~~~l~~~la~~~l~~~~~~~~~i~v~~~ 950 (982)
+.|++.. |..+.|||.|++++++++.....+. ... .+.++.|+.+
T Consensus 375 ~~i~~~a~~~~~~t~~~GaR~L~~~ie~~~~~~~~~~-~~~---~~~~~~i~~~ 424 (444)
T 1g41_A 375 KKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSA-SDM---NGQTVNIDAA 424 (444)
T ss_dssp HHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHG-GGC---TTCEEEECHH
T ss_pred HHHHHHHHHhccCCccCCchHHHHHHHHHHHHHHhhc-ccc---CCCeEEEeHH
Confidence 9999864 3478999999999999888877653 332 3467777665
No 15
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.89 E-value=6.9e-23 Score=209.66 Aligned_cols=193 Identities=70% Similarity=1.138 Sum_probs=167.8
Q ss_pred hHHHHHhhhhhHHHhhcCCCCCcccchHHHHHHHHHhccCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeE
Q 002012 249 YQALEKYGNDLTELARSGKLDPVIGRDDEIRRCIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKL 328 (982)
Q Consensus 249 ~~~l~~~~~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v 328 (982)
.+.|++++.+|.+++++..+++++|++++++++.+.+......+++|+||||||||++|+.+++.+.....+....+.++
T Consensus 2 ~~~l~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~ 81 (195)
T 1jbk_A 2 MQALKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRV 81 (195)
T ss_dssp CHHHHHHEEEHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEE
T ss_pred chHHHHHhHHHHHHHhhccccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcE
Confidence 45788999999999999999999999999999999998887889999999999999999999999988777776778999
Q ss_pred EEEecccccccccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCCCeEEEEecCch
Q 002012 329 ISLDMASLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRGELRCIGATTLN 408 (982)
Q Consensus 329 ~~l~~~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g~i~vI~at~~~ 408 (982)
+.+++..+..+..+.|.....+..++..+...+++.||||||+|.+.+.+...+..++.+.|+.+++.+++.+|++|+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~ 161 (195)
T 1jbk_A 82 LALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLD 161 (195)
T ss_dssp EEECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHTTSCCEEEEECHH
T ss_pred EEeeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhccCCeEEEEeCCHH
Confidence 99999888877777888888888998888766778899999999998665444456677889999999999999999999
Q ss_pred hHhhhhhcChHHHhccceEEecCCCHHHHHHHH
Q 002012 409 EYRNYIEKDPALERRFQQVFCDQPSVENTISIL 441 (982)
Q Consensus 409 ~~~~~~~~d~al~rRf~~i~i~~Ps~~e~~~IL 441 (982)
++.....+++++.+||..+.+..|+.+++.+||
T Consensus 162 ~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 162 EYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HHHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred HHHHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 988888899999999999999999999988765
No 16
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.88 E-value=1.1e-21 Score=220.26 Aligned_cols=201 Identities=23% Similarity=0.296 Sum_probs=160.6
Q ss_pred hcCCCCCcccchHHHHHHHHHhc-------------cCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEE
Q 002012 264 RSGKLDPVIGRDDEIRRCIQILS-------------RRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLIS 330 (982)
Q Consensus 264 ~~~~l~~liG~~~~i~~l~~~L~-------------~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~ 330 (982)
+.-+++++.|.++.++.+.+++. ...++++|||||||||||++|+++|.++ +.+++.
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~----------~~~f~~ 212 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHT----------DCKFIR 212 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHH----------TCEEEE
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhh----------CCCceE
Confidence 45688999999998877766431 2467899999999999999999999999 999999
Q ss_pred EecccccccccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCC---chhh---HHHHHHhhhc----CCCeE
Q 002012 331 LDMASLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQS---GAMD---ASNMLKPMLG----RGELR 400 (982)
Q Consensus 331 l~~~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~---~~~~---~~~~L~~~le----~g~i~ 400 (982)
++.+++. .+|.|+.+..++.+|..++. ..|+||||||+|.+.+.+... +... ..+.|+..|+ ...+.
T Consensus 213 v~~s~l~--sk~vGese~~vr~lF~~Ar~-~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~ 289 (405)
T 4b4t_J 213 VSGAELV--QKYIGEGSRMVRELFVMARE-HAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIK 289 (405)
T ss_dssp EEGGGGS--CSSTTHHHHHHHHHHHHHHH-TCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEE
T ss_pred EEhHHhh--ccccchHHHHHHHHHHHHHH-hCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeE
Confidence 9999998 56999999999999999987 678999999999998765322 2222 3344444443 56899
Q ss_pred EEEecCchhHhhhhhcChHHHh--ccc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccCh-HHHHHHHHHhhhhhccCC
Q 002012 401 CIGATTLNEYRNYIEKDPALER--RFQ-QVFCDQPSVENTISILRGLRERYELHHGVKISD-SALVSAAVLADRYITERF 476 (982)
Q Consensus 401 vI~at~~~~~~~~~~~d~al~r--Rf~-~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~-~~l~~~~~~s~r~i~~~~ 476 (982)
+|+|||.++ .+||||+| ||+ .|+|+.|+.+++.+||+.+..++. +++ -.+..++..+ .++
T Consensus 290 vIaATNrpd-----~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~------l~~dvdl~~lA~~t-----~G~ 353 (405)
T 4b4t_J 290 IIMATNRLD-----ILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMN------LTRGINLRKVAEKM-----NGC 353 (405)
T ss_dssp EEEEESCSS-----SSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSB------CCSSCCHHHHHHHC-----CSC
T ss_pred EEeccCChh-----hCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCC------CCccCCHHHHHHHC-----CCC
Confidence 999999999 89999999 997 999999999999999987776532 222 2256666664 456
Q ss_pred CcchhhHHHHHHHHHhh
Q 002012 477 LPDKAIDLVDEAAAKLK 493 (982)
Q Consensus 477 ~p~~a~~lld~a~~~~~ 493 (982)
.+++...++.+|+..+-
T Consensus 354 SGADi~~l~~eA~~~Ai 370 (405)
T 4b4t_J 354 SGADVKGVCTEAGMYAL 370 (405)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 67899999999876653
No 17
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.87 E-value=2.8e-21 Score=217.18 Aligned_cols=202 Identities=22% Similarity=0.333 Sum_probs=160.1
Q ss_pred hcCCCCCcccchHHHHHHHHHhc-------------cCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEE
Q 002012 264 RSGKLDPVIGRDDEIRRCIQILS-------------RRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLIS 330 (982)
Q Consensus 264 ~~~~l~~liG~~~~i~~l~~~L~-------------~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~ 330 (982)
+.-+|+++.|.++.++.+.+.+. ...+.++|||||||||||++|+++|.++ +.+++.
T Consensus 177 p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~----------~~~fi~ 246 (437)
T 4b4t_I 177 PTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT----------SATFLR 246 (437)
T ss_dssp CCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHH----------TCEEEE
T ss_pred CCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHh----------CCCEEE
Confidence 44588999999997777766431 2467899999999999999999999999 999999
Q ss_pred EecccccccccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCC---chhhHH---HHHHhhhc----CCCeE
Q 002012 331 LDMASLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQS---GAMDAS---NMLKPMLG----RGELR 400 (982)
Q Consensus 331 l~~~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~---~~~~~~---~~L~~~le----~g~i~ 400 (982)
++.+++. .+|.|+.+..++.+|..+.. ..|+||||||+|.+...+... +...+. +.|+..++ .+++.
T Consensus 247 v~~s~l~--sk~vGesek~ir~lF~~Ar~-~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~Vi 323 (437)
T 4b4t_I 247 IVGSELI--QKYLGDGPRLCRQIFKVAGE-NAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVK 323 (437)
T ss_dssp EESGGGC--CSSSSHHHHHHHHHHHHHHH-TCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEE
T ss_pred EEHHHhh--hccCchHHHHHHHHHHHHHh-cCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEE
Confidence 9999998 46999999999999999887 678999999999998775322 222333 33344333 56899
Q ss_pred EEEecCchhHhhhhhcChHHHh--ccc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccChH-HHHHHHHHhhhhhccCC
Q 002012 401 CIGATTLNEYRNYIEKDPALER--RFQ-QVFCDQPSVENTISILRGLRERYELHHGVKISDS-ALVSAAVLADRYITERF 476 (982)
Q Consensus 401 vI~at~~~~~~~~~~~d~al~r--Rf~-~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~-~l~~~~~~s~r~i~~~~ 476 (982)
||+|||.++ .+||||+| ||+ .|+|+.|+.+++.+||+.+..++. ++++ .+..++..+ ..+
T Consensus 324 VIaATNrpd-----~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~------l~~dvdl~~LA~~T-----~Gf 387 (437)
T 4b4t_I 324 VIMATNKIE-----TLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMN------LSEDVNLETLVTTK-----DDL 387 (437)
T ss_dssp EEEEESCST-----TCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSC------BCSCCCHHHHHHHC-----CSC
T ss_pred EEEeCCChh-----hcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCC------CCCcCCHHHHHHhC-----CCC
Confidence 999999999 89999999 997 899999999999999988776532 2222 256666664 456
Q ss_pred CcchhhHHHHHHHHHhhh
Q 002012 477 LPDKAIDLVDEAAAKLKM 494 (982)
Q Consensus 477 ~p~~a~~lld~a~~~~~~ 494 (982)
..++...++.+|+..+-.
T Consensus 388 SGADI~~l~~eA~~~Air 405 (437)
T 4b4t_I 388 SGADIQAMCTEAGLLALR 405 (437)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 678999999998866543
No 18
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.87 E-value=4.7e-22 Score=202.67 Aligned_cols=184 Identities=71% Similarity=1.183 Sum_probs=161.8
Q ss_pred HHHHHhhhhhHHHhhcCCCCCcccchHHHHHHHHHhccCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEE
Q 002012 250 QALEKYGNDLTELARSGKLDPVIGRDDEIRRCIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLI 329 (982)
Q Consensus 250 ~~l~~~~~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~ 329 (982)
+.|++|+.+|.+++++..+++++|++++++.+++.+......+++|+||||||||++|+.+++.+.....|....+..++
T Consensus 3 ~~l~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~ 82 (187)
T 2p65_A 3 QALEKYSRDLTALARAGKLDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLV 82 (187)
T ss_dssp CCTTTTEEEHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEE
T ss_pred hHHHHHHHHHHHHHhccccchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEE
Confidence 45778999999999999999999999999999999988888899999999999999999999999887777777789999
Q ss_pred EEecccccccccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCC-CCchhhHHHHHHhhhcCCCeEEEEecCch
Q 002012 330 SLDMASLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGN-QSGAMDASNMLKPMLGRGELRCIGATTLN 408 (982)
Q Consensus 330 ~l~~~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~-~~~~~~~~~~L~~~le~g~i~vI~at~~~ 408 (982)
.+++..+..+..+.|.....+..++..+...+++.||||||+|.+.+.+. ..+..++.+.|+.+++++.+.+|++|+..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~~ 162 (187)
T 2p65_A 83 SLDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLARGELRCIGATTVS 162 (187)
T ss_dssp EECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHHTTCSCEEEEECHH
T ss_pred EEeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccccchHHHHHHHHHHhcCCeeEEEecCHH
Confidence 99988887766677888888888888888766778999999999975544 33446788899999999999999999999
Q ss_pred hHhhhhhcChHHHhccceEEecCCC
Q 002012 409 EYRNYIEKDPALERRFQQVFCDQPS 433 (982)
Q Consensus 409 ~~~~~~~~d~al~rRf~~i~i~~Ps 433 (982)
++.....+++++.+||..+.++.|+
T Consensus 163 ~~~~~~~~~~~l~~R~~~i~i~~p~ 187 (187)
T 2p65_A 163 EYRQFIEKDKALERRFQQILVEQPS 187 (187)
T ss_dssp HHHHHTTTCHHHHHHEEEEECCSCC
T ss_pred HHHHHHhccHHHHHhcCcccCCCCC
Confidence 8877778899999999999999885
No 19
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.87 E-value=3.5e-21 Score=218.58 Aligned_cols=202 Identities=23% Similarity=0.306 Sum_probs=159.7
Q ss_pred hcCCCCCcccchHHHHHHHHHh-------------ccCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEE
Q 002012 264 RSGKLDPVIGRDDEIRRCIQIL-------------SRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLIS 330 (982)
Q Consensus 264 ~~~~l~~liG~~~~i~~l~~~L-------------~~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~ 330 (982)
+.-+|++|.|.++.++.+.+.+ .-..++++||+||||||||++|+++|.++ +.+++.
T Consensus 204 P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~----------~~~fi~ 273 (467)
T 4b4t_H 204 PDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRT----------DATFIR 273 (467)
T ss_dssp CSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHH----------TCEEEE
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhcc----------CCCeEE
Confidence 3458999999999887776643 12577899999999999999999999999 999999
Q ss_pred EecccccccccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCc---hhhH---HHHHHhhhc----CCCeE
Q 002012 331 LDMASLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSG---AMDA---SNMLKPMLG----RGELR 400 (982)
Q Consensus 331 l~~~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~---~~~~---~~~L~~~le----~g~i~ 400 (982)
++.+.+. .+|.|+.+..++.+|..++. ..|+||||||+|.+...+...+ ...+ .+.|+..++ .+.+.
T Consensus 274 vs~s~L~--sk~vGesek~ir~lF~~Ar~-~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~Vi 350 (467)
T 4b4t_H 274 VIGSELV--QKYVGEGARMVRELFEMART-KKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIK 350 (467)
T ss_dssp EEGGGGC--CCSSSHHHHHHHHHHHHHHH-TCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEE
T ss_pred EEhHHhh--cccCCHHHHHHHHHHHHHHh-cCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEE
Confidence 9999998 45999999999999999887 6789999999999987654322 2222 233344443 56899
Q ss_pred EEEecCchhHhhhhhcChHHHh--ccc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCC
Q 002012 401 CIGATTLNEYRNYIEKDPALER--RFQ-QVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFL 477 (982)
Q Consensus 401 vI~at~~~~~~~~~~~d~al~r--Rf~-~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~ 477 (982)
+|+|||.++ .+||||+| ||+ .|+|+.|+.+++.+||+.+..++....++ .+..++..+. ++.
T Consensus 351 VIaATNrpd-----~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dv-----dl~~LA~~T~-----GfS 415 (467)
T 4b4t_H 351 VMFATNRPN-----TLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGI-----RWELISRLCP-----NST 415 (467)
T ss_dssp EEEECSCTT-----SBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSC-----CHHHHHHHCC-----SCC
T ss_pred EEeCCCCcc-----cCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCC-----CHHHHHHHCC-----CCC
Confidence 999999999 89999999 997 99999999999999998877653222222 2456666644 456
Q ss_pred cchhhHHHHHHHHHhh
Q 002012 478 PDKAIDLVDEAAAKLK 493 (982)
Q Consensus 478 p~~a~~lld~a~~~~~ 493 (982)
.++...++.+|+..+.
T Consensus 416 GADI~~l~~eAa~~Ai 431 (467)
T 4b4t_H 416 GAELRSVCTEAGMFAI 431 (467)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7888999998876543
No 20
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.87 E-value=2e-21 Score=221.65 Aligned_cols=202 Identities=23% Similarity=0.303 Sum_probs=160.6
Q ss_pred hcCCCCCcccchHHHHHHHHHhc-------------cCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEE
Q 002012 264 RSGKLDPVIGRDDEIRRCIQILS-------------RRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLIS 330 (982)
Q Consensus 264 ~~~~l~~liG~~~~i~~l~~~L~-------------~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~ 330 (982)
++-+++++.|.++.++.+.+.+. ...++++|||||||||||++|+++|..+ +.+++.
T Consensus 176 p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~----------~~~f~~ 245 (434)
T 4b4t_M 176 PTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT----------NATFLK 245 (434)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH----------TCEEEE
T ss_pred CCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHh----------CCCEEE
Confidence 45589999999998888776431 2467899999999999999999999999 999999
Q ss_pred EecccccccccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCC---chhhH---HHHHHhhhc----CCCeE
Q 002012 331 LDMASLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQS---GAMDA---SNMLKPMLG----RGELR 400 (982)
Q Consensus 331 l~~~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~---~~~~~---~~~L~~~le----~g~i~ 400 (982)
++.+++. .+|.|+.+..++.+|..+.. ..|+||||||+|.+.+.+... +...+ .+.|+..++ .+++.
T Consensus 246 v~~s~l~--~~~vGese~~ir~lF~~A~~-~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~Vi 322 (434)
T 4b4t_M 246 LAAPQLV--QMYIGEGAKLVRDAFALAKE-KAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVK 322 (434)
T ss_dssp EEGGGGC--SSCSSHHHHHHHHHHHHHHH-HCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSE
T ss_pred Eehhhhh--hcccchHHHHHHHHHHHHHh-cCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEE
Confidence 9999998 45999999999999998887 568999999999998776432 22233 334444443 46799
Q ss_pred EEEecCchhHhhhhhcChHHHh--ccc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCC
Q 002012 401 CIGATTLNEYRNYIEKDPALER--RFQ-QVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFL 477 (982)
Q Consensus 401 vI~at~~~~~~~~~~~d~al~r--Rf~-~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~ 477 (982)
||+|||.++ .+||||.| ||+ .|+|+.|+.+++.+||+.+..++....++ .+..++..+ .++.
T Consensus 323 VIaaTNrp~-----~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dv-----dl~~lA~~t-----~G~s 387 (434)
T 4b4t_M 323 VLAATNRVD-----VLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDI-----NWQELARST-----DEFN 387 (434)
T ss_dssp EEEECSSCC-----CCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCC-----CHHHHHHHC-----SSCC
T ss_pred EEEeCCCch-----hcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcC-----CHHHHHHhC-----CCCC
Confidence 999999999 89999988 997 99999999999999999888774322222 245666664 4566
Q ss_pred cchhhHHHHHHHHHhh
Q 002012 478 PDKAIDLVDEAAAKLK 493 (982)
Q Consensus 478 p~~a~~lld~a~~~~~ 493 (982)
+++...++.+|+..+.
T Consensus 388 GADi~~l~~eA~~~a~ 403 (434)
T 4b4t_M 388 GAQLKAVTVEAGMIAL 403 (434)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7888999988876543
No 21
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.87 E-value=2.2e-21 Score=214.37 Aligned_cols=227 Identities=18% Similarity=0.261 Sum_probs=174.0
Q ss_pred cccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEecccccccccccccc
Q 002012 663 KRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRLV 742 (982)
Q Consensus 663 ~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l~ 742 (982)
..++|++.++..+...+.... ....++||+||||||||++|++|++.....+.+|+.+||+.+......+.++
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a-------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~~lf 74 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVA-------PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESELF 74 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHC-------STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHHHHT
T ss_pred CCcEECCHHHHHHHHHHHHHh-------CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHHHhc
Confidence 468999999999999888762 1123599999999999999999999886667899999999886554455678
Q ss_pred CCCCC-ccccccCCchhHHHhhCCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCChHHHH
Q 002012 743 GAPPG-YVGYEEGGQLTEVVRRRPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYIL 821 (982)
Q Consensus 743 g~~~g-~vg~~~~~~l~~~l~~~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~i~ 821 (982)
|...| +.|... ...+.+..+.+++||||||+.+++..|..|+.+|+++.+....+......++.||+|||.......
T Consensus 75 g~~~g~~tg~~~--~~~g~~~~a~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~~v 152 (304)
T 1ojl_A 75 GHEKGAFTGADK--RREGRFVEADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEV 152 (304)
T ss_dssp CCCSSCCC---C--CCCCHHHHHTTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHHHHH
T ss_pred CccccccCchhh--hhcCHHHhcCCCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccHHHHH
Confidence 87654 333322 123345556678999999999999999999999999887654443334467899999998755333
Q ss_pred HhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhcccc-ccccCCCC--hhHHHHHHHHHHHHHHHHHHhCCCCccCCH
Q 002012 822 ETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDE-YIVFQPLD--SKEISKIVEIQMNRVKDRLKQKKIDLHYTK 898 (982)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~-ii~F~pl~--~~~l~~il~~~l~~~~~~~~~~~~~l~i~~ 898 (982)
. .+.|+++|++||+. .|.++|+. .+++..++..++.++...+... ...+++
T Consensus 153 ~------------------------~g~fr~~L~~Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~--~~~~s~ 206 (304)
T 1ojl_A 153 S------------------------AGRFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKV--VKGFTP 206 (304)
T ss_dssp H------------------------HTSSCHHHHHHHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCC--CCCBCH
T ss_pred H------------------------hCCcHHHHHhhcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccC--ccCCCH
Confidence 2 14589999999964 47799999 6899999999998776554322 367999
Q ss_pred HHHHHHHhcCCCCCCCchHHHHHHHHHH
Q 002012 899 EAVTLLGILGFDPNFGARPVKRVIQQLV 926 (982)
Q Consensus 899 ~a~~~L~~~~~~~~~gaR~L~~~i~~~l 926 (982)
++++.|..+.|++| .|.|++++++.+
T Consensus 207 ~a~~~L~~~~wpGn--vReL~~~l~~~~ 232 (304)
T 1ojl_A 207 QAMDLLIHYDWPGN--IRELENAIERAV 232 (304)
T ss_dssp HHHHHHHHCCCSSH--HHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCC--HHHHHHHHHHHH
Confidence 99999999998865 599999999854
No 22
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.86 E-value=1.3e-21 Score=216.98 Aligned_cols=251 Identities=24% Similarity=0.396 Sum_probs=184.8
Q ss_pred HHHHHhhhcccccchHHHHHHHHHHHHH--hcCCCC---CCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEec
Q 002012 655 VMLEEVLHKRVIGQDIAVKSVADAIRRS--RAGLSD---PARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDM 729 (982)
Q Consensus 655 ~~l~~~l~~~iiGq~~a~~~l~~~i~~~--~~g~~~---~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~ 729 (982)
..+.+.+...++||+.+++.+..++... +.++.. +..+..++||+||||||||++|+++++.+ +.+++.++|
T Consensus 7 ~~l~~~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l---~~~~~~i~~ 83 (310)
T 1ofh_A 7 REIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA---NAPFIKVEA 83 (310)
T ss_dssp HHHHHHHHTTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH---TCCEEEEEG
T ss_pred HHHHHHHhhhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh---CCCEEEEcc
Confidence 4567778899999999999999988752 111110 01122359999999999999999999998 678999999
Q ss_pred cccccccccccccCCCCCccccccCCchhHHHhh--------CCCeEEEEccccccCHHH------------HHHHHHhh
Q 002012 730 SEYMEKHSVSRLVGAPPGYVGYEEGGQLTEVVRR--------RPYSVVLFDEIEKAHQDV------------FNILLQLL 789 (982)
Q Consensus 730 s~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~--------~~~~Vl~lDEidkl~~~~------------~~~Ll~~l 789 (982)
+.+... +|+|......+.+.+.. .+++||||||+|++++.. ++.|+++|
T Consensus 84 ~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~l 152 (310)
T 1ofh_A 84 TKFTEV-----------GYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLV 152 (310)
T ss_dssp GGGSSC-----------CSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHH
T ss_pred hhcccC-----------CccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHh
Confidence 987432 35554433333333322 236799999999998654 99999999
Q ss_pred hcCceecCCCcEEecccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCCh
Q 002012 790 DDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDS 869 (982)
Q Consensus 790 e~g~~~d~~g~~~~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~ 869 (982)
+++.+....+ ..+..+++||+++|..... ...++|+|++||+.+|.|+|++.
T Consensus 153 e~~~~~~~~~-~~~~~~~~~i~~~~~~~~~---------------------------~~~l~~~l~~R~~~~i~~~~~~~ 204 (310)
T 1ofh_A 153 EGSTVSTKHG-MVKTDHILFIASGAFQVAR---------------------------PSDLIPELQGRLPIRVELTALSA 204 (310)
T ss_dssp HCCEEEETTE-EEECTTCEEEEEECCSSSC---------------------------GGGSCHHHHHTCCEEEECCCCCH
T ss_pred cCCeEecccc-cccCCcEEEEEcCCcccCC---------------------------cccCCHHHHhhCCceEEcCCcCH
Confidence 9887665444 4566789999998643210 02278999999998899999999
Q ss_pred hHHHHHHH----HHHHHHHHHHHhCCCCccCCHHHHHHHHhcCCCC-----CCCchHHHHHHHHHHHHHHHHHHHcCCCC
Q 002012 870 KEISKIVE----IQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDP-----NFGARPVKRVIQQLVENEIAVAILKGDIK 940 (982)
Q Consensus 870 ~~l~~il~----~~l~~~~~~~~~~~~~l~i~~~a~~~L~~~~~~~-----~~gaR~L~~~i~~~l~~~la~~~l~~~~~ 940 (982)
+++.+|+. ..+.++...+...+..+.++++++++|+.++|+. ..++|.+.+++++.+.....+.. ..
T Consensus 205 ~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~----~~ 280 (310)
T 1ofh_A 205 ADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSAS----DM 280 (310)
T ss_dssp HHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHSHHHHHHGG----GC
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhcccccccCcHHHHHHHHHHHHhhhcCCc----cc
Confidence 99999999 4556666666666777889999999999987752 56789999999997776554322 23
Q ss_pred CCCEEEEEeec
Q 002012 941 EEDSVIIDVDD 951 (982)
Q Consensus 941 ~~~~i~v~~~~ 951 (982)
.+..+.|+.++
T Consensus 281 ~~~~~~i~~~~ 291 (310)
T 1ofh_A 281 NGQTVNIDAAY 291 (310)
T ss_dssp TTCEEEECHHH
T ss_pred cCCEEEEeeHH
Confidence 56777777654
No 23
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.86 E-value=8e-21 Score=206.07 Aligned_cols=227 Identities=18% Similarity=0.269 Sum_probs=165.3
Q ss_pred hcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccccccc
Q 002012 662 HKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRL 741 (982)
Q Consensus 662 ~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l 741 (982)
++.++|++.++..+.+.+...... + .++||+||||||||++|+++++.+...+.+++.++|+.+........+
T Consensus 5 f~~~ig~~~~~~~~~~~~~~~~~~------~-~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~~~~~l 77 (265)
T 2bjv_A 5 KDNLLGEANSFLEVLEQVSHLAPL------D-KPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSEL 77 (265)
T ss_dssp -----CCCHHHHHHHHHHHHHTTS------C-SCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHHHHHHH
T ss_pred cccceeCCHHHHHHHHHHHHHhCC------C-CCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhHHHHHh
Confidence 466899999999998888765321 1 259999999999999999999988665678999999998654334456
Q ss_pred cCCCCC-ccccccCCchhHHHhhCCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCChHHH
Q 002012 742 VGAPPG-YVGYEEGGQLTEVVRRRPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYI 820 (982)
Q Consensus 742 ~g~~~g-~vg~~~~~~l~~~l~~~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~i 820 (982)
+|...+ +.|.... ..+.+..+.+++||||||+.++++.|+.|+++|+++.+....+......++.||+|||......
T Consensus 78 ~g~~~~~~~g~~~~--~~~~l~~a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~~~~ 155 (265)
T 2bjv_A 78 FGHEAGAFTGAQKR--HPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAM 155 (265)
T ss_dssp HCCC---------C--CCCHHHHTTTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSCHHHH
T ss_pred cCCccccccccccc--ccchhhhcCCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcCHHHH
Confidence 776543 3332211 2234555667899999999999999999999999998765444433446789999999876533
Q ss_pred HHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhcccc-ccccCCCCh--hHHHHHHHHHHHHHHHHHHhCCCC--cc
Q 002012 821 LETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDE-YIVFQPLDS--KEISKIVEIQMNRVKDRLKQKKID--LH 895 (982)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~-ii~F~pl~~--~~l~~il~~~l~~~~~~~~~~~~~--l~ 895 (982)
.. ...|+++|++||+. .|.++|++. +++..+++.+++++... .+.. ..
T Consensus 156 ~~------------------------~~~~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~---~~~~~~~~ 208 (265)
T 2bjv_A 156 VN------------------------EGTFRADLLDALAFDVVQLPPLRERESDIMLMAEYFAIQMCRE---IKLPLFPG 208 (265)
T ss_dssp HH------------------------HTSSCHHHHHHHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHH---TTCSSCCC
T ss_pred HH------------------------cCCccHHHHHhhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHH---hCCCcccC
Confidence 32 14589999999964 688999986 78898988888775543 3333 37
Q ss_pred CCHHHHHHHHhcCCCCCCCchHHHHHHHHHH
Q 002012 896 YTKEAVTLLGILGFDPNFGARPVKRVIQQLV 926 (982)
Q Consensus 896 i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~l 926 (982)
+++++++.|..++|++| .|+|+++++..+
T Consensus 209 ~~~~a~~~L~~~~~~gn--~reL~~~l~~~~ 237 (265)
T 2bjv_A 209 FTERARETLLNYRWPGN--IRELKNVVERSV 237 (265)
T ss_dssp BCHHHHHHHHHSCCTTH--HHHHHHHHHHHH
T ss_pred cCHHHHHHHHhCCCCCC--HHHHHHHHHHHH
Confidence 99999999999988754 599999999854
No 24
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.86 E-value=5.3e-21 Score=218.36 Aligned_cols=202 Identities=21% Similarity=0.298 Sum_probs=159.2
Q ss_pred hcCCCCCcccchHHHHHHHHHhc-------------cCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEE
Q 002012 264 RSGKLDPVIGRDDEIRRCIQILS-------------RRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLIS 330 (982)
Q Consensus 264 ~~~~l~~liG~~~~i~~l~~~L~-------------~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~ 330 (982)
+.-++++|.|.++.++.+.+++. ...++++|||||||||||++|+++|..+ +.+++.
T Consensus 176 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~----------~~~~~~ 245 (437)
T 4b4t_L 176 GEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATI----------GANFIF 245 (437)
T ss_dssp CSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH----------TCEEEE
T ss_pred CCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHh----------CCCEEE
Confidence 34578999999997777766431 2467899999999999999999999999 999999
Q ss_pred EecccccccccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCc---hhh---HHHHHHhhhc----CCCeE
Q 002012 331 LDMASLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSG---AMD---ASNMLKPMLG----RGELR 400 (982)
Q Consensus 331 l~~~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~---~~~---~~~~L~~~le----~g~i~ 400 (982)
++++++. .+|.|+.+..++.+|..+.. ..|+||||||+|.+.+.+...+ ... ..+.|+..++ .+.+.
T Consensus 246 v~~s~l~--sk~~Gese~~ir~~F~~A~~-~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vi 322 (437)
T 4b4t_L 246 SPASGIV--DKYIGESARIIREMFAYAKE-HEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTK 322 (437)
T ss_dssp EEGGGTC--CSSSSHHHHHHHHHHHHHHH-SCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSE
T ss_pred Eehhhhc--cccchHHHHHHHHHHHHHHh-cCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeE
Confidence 9999998 45999999999999999887 6799999999999987653222 222 3344555553 46799
Q ss_pred EEEecCchhHhhhhhcChHHHh--ccc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCC
Q 002012 401 CIGATTLNEYRNYIEKDPALER--RFQ-QVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFL 477 (982)
Q Consensus 401 vI~at~~~~~~~~~~~d~al~r--Rf~-~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~ 477 (982)
||+|||.++ .+||||+| ||+ .|+|+.|+.+++.+||+.+..++.... +..+..++..+ .++.
T Consensus 323 vI~ATNrp~-----~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~-----d~dl~~lA~~t-----~G~s 387 (437)
T 4b4t_L 323 IIMATNRPD-----TLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTG-----EFDFEAAVKMS-----DGFN 387 (437)
T ss_dssp EEEEESSTT-----SSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCS-----CCCHHHHHHTC-----CSCC
T ss_pred EEEecCCch-----hhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCc-----ccCHHHHHHhC-----CCCC
Confidence 999999998 89999998 597 999999999999999998877642211 22256666664 4566
Q ss_pred cchhhHHHHHHHHHhh
Q 002012 478 PDKAIDLVDEAAAKLK 493 (982)
Q Consensus 478 p~~a~~lld~a~~~~~ 493 (982)
+++...++.+|+..+-
T Consensus 388 GADi~~l~~eA~~~ai 403 (437)
T 4b4t_L 388 GADIRNCATEAGFFAI 403 (437)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7889999998876553
No 25
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=99.85 E-value=2.1e-21 Score=194.11 Aligned_cols=155 Identities=19% Similarity=0.197 Sum_probs=127.7
Q ss_pred cceeecccccccCCCCCcCCcccccHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhcCCCcHHHHHHHHcCCChHHHHH
Q 002012 74 RKFHSSTPLRSSTTGVSQITPTEFTEKAWEGIVGAVDAARVNNQQVVETEHLMKALLEQKDGLARRILTKAGQDNTKVLQ 153 (982)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~ft~~a~~~l~~A~~~A~~~~~~~v~~eHlLlaLl~~~~~~~~~iL~~~gv~~~~l~~ 153 (982)
+.+|-+-|.+. .-.|||++||++++++|..|+++|+++||++|+|||||+|||+++++.+.++|+++|||++.+++
T Consensus 6 ~~~~~~~~~~~----~l~~~~~kfT~~a~~aL~~A~~~A~~~~h~~I~~EHLLlaLL~~~~~~a~~iL~~~gvd~~~l~~ 81 (171)
T 3zri_A 6 HHHHHTDPIRI----ELPTLIAKLNAQSKLALEQAASLCIERQHPEVTLEHYLDVLLDNPLSDVRLVLKQAGLEVDQVKQ 81 (171)
T ss_dssp TTSCCCCSCCC----CHHHHHHHBCHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHTTCTTSHHHHHHHHTTCCHHHHHH
T ss_pred cccccCCchhh----hHHHHHHHcCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHccCcHHHHHHHHcCCCHHHHHH
Confidence 34444555544 33899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCCCCCCCCCCCccChhhHHHHHHHHHHHH-HcCCCccCHHHHHHHHhcCCcc--ccccccc-ccCCHHHHHH
Q 002012 154 ATEDFISKQPKVTGATSGPIVGSNFGLLLSNAQRIKK-EMEDDFVSVEHLLLAFLSDDRF--GRLLFND-IRLNEKDLKD 229 (982)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~s~~~~~vl~~A~~~a~-~~g~~~I~~ehLllall~~~~~--a~~lL~~-~gi~~~~l~~ 229 (982)
.++ .+++.|...+ +.+++|+.++++|+.|+.+|+ ++|++||+++|||+||++++.. ...+-.. ..|+.+.+++
T Consensus 82 ~l~-~l~~~p~~~~--~~~~~S~~l~~vL~~A~~~A~l~~gd~~I~teHLLLALl~~~~~~~~~~~~~~l~~i~~~~L~~ 158 (171)
T 3zri_A 82 AIA-STYSREQVLD--TYPAFSPLLVELLQEAWLLSSTELEQAELRSGAIFLAALTRADRYLSFKLISLFEGINRENLKK 158 (171)
T ss_dssp HHH-HHSCCCCCCS--SCCEECHHHHHHHHHHHHHHHTTTCCSSBCHHHHHHHHHHTHHHHSCHHHHHHTTTSCHHHHHH
T ss_pred HHH-HHhcCCCCCC--CCCCcCHHHHHHHHHHHHHHHHHcCCCEEcHHHHHHHHHhChhhhHHHHhhHHHHcCCHHHHHH
Confidence 999 9998886433 468999999999999999999 9999999999999999965411 1111111 2467777776
Q ss_pred HHHhhh
Q 002012 230 AVKAVR 235 (982)
Q Consensus 230 ~i~~~~ 235 (982)
.+..+.
T Consensus 159 ~~~~~~ 164 (171)
T 3zri_A 159 HFAMIL 164 (171)
T ss_dssp THHHHT
T ss_pred HHHHHH
Confidence 654443
No 26
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.85 E-value=1.6e-20 Score=214.04 Aligned_cols=201 Identities=19% Similarity=0.251 Sum_probs=158.6
Q ss_pred hcCCCCCcccchHHHHHHHHHhc-------------cCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEE
Q 002012 264 RSGKLDPVIGRDDEIRRCIQILS-------------RRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLIS 330 (982)
Q Consensus 264 ~~~~l~~liG~~~~i~~l~~~L~-------------~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~ 330 (982)
+.-+++++.|.++.++.+.+.+. ...++++|||||||||||++|+++|..+ +.+++.
T Consensus 167 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~----------~~~~~~ 236 (428)
T 4b4t_K 167 PDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANST----------KAAFIR 236 (428)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHH----------TCEEEE
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCeEE
Confidence 34588999999998877776442 2467789999999999999999999999 999999
Q ss_pred EecccccccccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCC---Cch---hhHHHHHHhhhc----CCCeE
Q 002012 331 LDMASLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQ---SGA---MDASNMLKPMLG----RGELR 400 (982)
Q Consensus 331 l~~~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~---~~~---~~~~~~L~~~le----~g~i~ 400 (982)
++++++. .+|.|+.+..++.+|..++. ..|+|+||||+|.+...+.. .+. ..+.+.|+..++ ..++.
T Consensus 237 v~~~~l~--~~~~Ge~e~~ir~lF~~A~~-~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~ 313 (428)
T 4b4t_K 237 VNGSEFV--HKYLGEGPRMVRDVFRLARE-NAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVK 313 (428)
T ss_dssp EEGGGTC--CSSCSHHHHHHHHHHHHHHH-TCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEE
T ss_pred Eecchhh--ccccchhHHHHHHHHHHHHH-cCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEE
Confidence 9999998 45999999999999999887 67899999999999876532 122 223344444443 56899
Q ss_pred EEEecCchhHhhhhhcChHHHh--ccc-eEEec-CCCHHHHHHHHHHHHHHHhhhcCCccCh-HHHHHHHHHhhhhhccC
Q 002012 401 CIGATTLNEYRNYIEKDPALER--RFQ-QVFCD-QPSVENTISILRGLRERYELHHGVKISD-SALVSAAVLADRYITER 475 (982)
Q Consensus 401 vI~at~~~~~~~~~~~d~al~r--Rf~-~i~i~-~Ps~~e~~~IL~~~~~~~~~~~~v~i~~-~~l~~~~~~s~r~i~~~ 475 (982)
||+|||.++ .+||||+| ||+ .|+|+ .|+.+++..||+.+..++. +++ ..+..++..+. +
T Consensus 314 vI~aTN~~~-----~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~------l~~~~dl~~lA~~t~-----G 377 (428)
T 4b4t_K 314 VIMATNRAD-----TLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMS------LAPEADLDSLIIRND-----S 377 (428)
T ss_dssp EEEEESCSS-----SCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSC------BCTTCCHHHHHHHTT-----T
T ss_pred EEEecCChh-----hcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCC------CCcccCHHHHHHHCC-----C
Confidence 999999999 89999999 997 88896 7999999999998876532 222 22566676644 4
Q ss_pred CCcchhhHHHHHHHHHhh
Q 002012 476 FLPDKAIDLVDEAAAKLK 493 (982)
Q Consensus 476 ~~p~~a~~lld~a~~~~~ 493 (982)
+.+++...++.+|+..+-
T Consensus 378 ~sgadi~~l~~eA~~~a~ 395 (428)
T 4b4t_K 378 LSGAVIAAIMQEAGLRAV 395 (428)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 567888999998876543
No 27
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.84 E-value=1.3e-20 Score=224.35 Aligned_cols=262 Identities=21% Similarity=0.297 Sum_probs=179.9
Q ss_pred HhHHHHHHHHhhCCCCcccchhHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchH
Q 002012 628 DLDIAEIVSKWTGIPLSSLQQSEREKLVMLEEVLHKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKT 707 (982)
Q Consensus 628 ~~~i~~~~~~~~gi~~~~~~~~~~~~l~~l~~~l~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT 707 (982)
...+.+++++++++||...... ...+....+.+..+++|+++++..+...+......... +..+++|+||||||||
T Consensus 47 ~~~~~~~l~~~~~lp~~~~~~~-~~~~~~~~~~l~~di~G~~~vk~~i~~~~~l~~~~~~~---~g~~vll~Gp~GtGKT 122 (543)
T 3m6a_A 47 SSVIRNYIDWLVALPWTDETDD-KLDLKEAGRLLDEEHHGLEKVKERILEYLAVQKLTKSL---KGPILCLAGPPGVGKT 122 (543)
T ss_dssp TTHHHHHHHHHHHSCSSCCCCC-CCCTTTGGGTHHHHCSSCHHHHHHHHHHHHHHHHSSSC---CSCEEEEESSSSSSHH
T ss_pred HhHHHHHHHHHhcCCCCccccc-cccHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccC---CCCEEEEECCCCCCHH
Confidence 4458889999999998775443 12244556677889999999999998877654443332 3336999999999999
Q ss_pred HHHHHHHHHhcCCCCceEEEeccccccccccccccCCCCCccccccCCchhHHHhhC--CCeEEEEccccccCHH----H
Q 002012 708 ELGKALADFLFNTENALVRIDMSEYMEKHSVSRLVGAPPGYVGYEEGGQLTEVVRRR--PYSVVLFDEIEKAHQD----V 781 (982)
Q Consensus 708 ~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~~--~~~Vl~lDEidkl~~~----~ 781 (982)
++|++||..+ +.++..++|+.+.. ...+.|....|+|+..+. +...+..+ .++|+||||||+++++ .
T Consensus 123 tlar~ia~~l---~~~~~~i~~~~~~~---~~~~~g~~~~~ig~~~~~-~~~~~~~a~~~~~vl~lDEid~l~~~~~~~~ 195 (543)
T 3m6a_A 123 SLAKSIAKSL---GRKFVRISLGGVRD---ESEIRGHRRTYVGAMPGR-IIQGMKKAGKLNPVFLLDEIDKMSSDFRGDP 195 (543)
T ss_dssp HHHHHHHHHH---TCEEEEECCCC-----------------------C-HHHHHHTTCSSSEEEEEEESSSCC-------
T ss_pred HHHHHHHHhc---CCCeEEEEecccch---hhhhhhHHHHHhccCchH-HHHHHHHhhccCCEEEEhhhhhhhhhhccCH
Confidence 9999999998 67899999987643 334556555666665443 44455544 4569999999999988 5
Q ss_pred HHHHHHhhhcCce---ecC-CCcEEecccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhc
Q 002012 782 FNILLQLLDDGRI---TDS-QGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNR 857 (982)
Q Consensus 782 ~~~Ll~~le~g~~---~d~-~g~~~~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~R 857 (982)
++.|+++|+++.. .+. .+..+++.+++||+|||.... |+|+|++|
T Consensus 196 ~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~-------------------------------l~~aL~~R 244 (543)
T 3m6a_A 196 SSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLAT-------------------------------IPGPLRDR 244 (543)
T ss_dssp --CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTT-------------------------------SCHHHHHH
T ss_pred HHHHHHHHhhhhcceeecccCCeeecccceEEEeccCcccc-------------------------------CCHHHHhh
Confidence 6999999987643 332 245677799999999997542 89999999
Q ss_pred cccccccCCCChhHHHHHHHHHHHHHHHHHHhCCC---CccCCHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHH
Q 002012 858 IDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKI---DLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAI 934 (982)
Q Consensus 858 id~ii~F~pl~~~~l~~il~~~l~~~~~~~~~~~~---~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~l~~~la~~~ 934 (982)
|+ +|.|++++.++..+|+..++.. +.+...+. .+.+++++++.|+.. |.+..|+|.|++.|++++..+. ..+
T Consensus 245 ~~-vi~~~~~~~~e~~~Il~~~l~~--~~~~~~~~~~~~i~i~~~~l~~l~~~-~~~~~~vR~L~~~i~~~~~~aa-~~~ 319 (543)
T 3m6a_A 245 ME-IINIAGYTEIEKLEIVKDHLLP--KQIKEHGLKKSNLQLRDQAILDIIRY-YTREAGVRSLERQLAAICRKAA-KAI 319 (543)
T ss_dssp EE-EEECCCCCHHHHHHHHHHTHHH--HHHHHTTCCGGGCEECHHHHHHHHHH-HCCCSSSHHHHHHHHHHHHHHH-HHH
T ss_pred cc-eeeeCCCCHHHHHHHHHHHHHH--HHHHHcCCCcccccCCHHHHHHHHHh-CChhhchhHHHHHHHHHHHHHH-HHH
Confidence 95 7999999999999999888743 22233443 578899999998772 4455788999999999776644 344
Q ss_pred Hc
Q 002012 935 LK 936 (982)
Q Consensus 935 l~ 936 (982)
+.
T Consensus 320 ~~ 321 (543)
T 3m6a_A 320 VA 321 (543)
T ss_dssp HT
T ss_pred Hh
Confidence 44
No 28
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.84 E-value=1.3e-19 Score=207.02 Aligned_cols=228 Identities=18% Similarity=0.279 Sum_probs=184.1
Q ss_pred cccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEecccccccccccccc
Q 002012 663 KRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRLV 742 (982)
Q Consensus 663 ~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l~ 742 (982)
..++|++..++.+.+.+.... ....++++.|++||||+.+|+.++......+.+|+.+||+.+.+....+.++
T Consensus 137 ~~~ig~s~~m~~l~~~i~~~a-------~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elf 209 (387)
T 1ny5_A 137 EEYVFESPKMKEILEKIKKIS-------CAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELF 209 (387)
T ss_dssp CCCCCCSHHHHHHHHHHHHHT-------TCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHH
T ss_pred hhhhhccHHhhHHHHHHHHhc-------CCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhc
Confidence 578999999999998888752 1122489999999999999999999887777899999999987766667789
Q ss_pred CCCCC-ccccccCCchhHHHhhCCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCChHHHH
Q 002012 743 GAPPG-YVGYEEGGQLTEVVRRRPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYIL 821 (982)
Q Consensus 743 g~~~g-~vg~~~~~~l~~~l~~~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~i~ 821 (982)
|...| +.|.... -.+.+..+.+++||||||+.++++.|..|+++|++|.+....|......++++|++||.+.....
T Consensus 210 g~~~g~~tga~~~--~~g~~~~a~~gtlfldei~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~~ 287 (387)
T 1ny5_A 210 GYEKGAFTGAVSS--KEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELV 287 (387)
T ss_dssp CBCTTSSTTCCSC--BCCHHHHTTTSEEEEESGGGCCHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHHHH
T ss_pred CCCCCCCCCcccc--cCCceeeCCCcEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCCHHHHH
Confidence 98765 4443221 24567778889999999999999999999999999998876666666678999999999876544
Q ss_pred HhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhcccc-ccccCCCCh--hHHHHHHHHHHHHHHHHHHhCCCCccCCH
Q 002012 822 ETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDE-YIVFQPLDS--KEISKIVEIQMNRVKDRLKQKKIDLHYTK 898 (982)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~-ii~F~pl~~--~~l~~il~~~l~~~~~~~~~~~~~l~i~~ 898 (982)
. .+.|+++|++|+.. .|.+|||.+ +|+..+++.+++++..++... ...+++
T Consensus 288 ~------------------------~g~fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~--~~~~~~ 341 (387)
T 1ny5_A 288 K------------------------EGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKE--VEGFTK 341 (387)
T ss_dssp H------------------------TTSSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCC--CCEECH
T ss_pred H------------------------cCCccHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCC--CCCCCH
Confidence 3 25699999999965 477899976 899999999998877554332 246999
Q ss_pred HHHHHHHhcCCCCCCCchHHHHHHHHHHH
Q 002012 899 EAVTLLGILGFDPNFGARPVKRVIQQLVE 927 (982)
Q Consensus 899 ~a~~~L~~~~~~~~~gaR~L~~~i~~~l~ 927 (982)
++++.|..+.|++|. |+|+++|++.+.
T Consensus 342 ~a~~~l~~~~wpGNv--reL~~~i~~~~~ 368 (387)
T 1ny5_A 342 SAQELLLSYPWYGNV--RELKNVIERAVL 368 (387)
T ss_dssp HHHHHHHHSCCTTHH--HHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCcHH--HHHHHHHHHHHH
Confidence 999999999998755 999999998543
No 29
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.83 E-value=1.1e-19 Score=225.95 Aligned_cols=179 Identities=18% Similarity=0.281 Sum_probs=130.3
Q ss_pred CCcccchHHHHHHHHHhccC---------CCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEeccccccc
Q 002012 269 DPVIGRDDEIRRCIQILSRR---------TKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAG 339 (982)
Q Consensus 269 ~~liG~~~~i~~l~~~L~~~---------~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~ 339 (982)
..++|+++.++.+...+.+. +..++||+||||||||++|+++|+.+... +.+++.+||+.+...
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~-------~~~~i~i~~s~~~~~ 563 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGD-------EESMIRIDMSEYMEK 563 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSC-------TTCEEEEEGGGGCSS
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC-------CcceEEEechhcccc
Confidence 45899999998888877541 11269999999999999999999998443 678999999988754
Q ss_pred ccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCC-------------CeEEEEecC
Q 002012 340 TCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRG-------------ELRCIGATT 406 (982)
Q Consensus 340 ~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g-------------~i~vI~at~ 406 (982)
... . .. .+.+.+.. ..+.|||||||+.+. .++++.|+++++.| ++++|+|||
T Consensus 564 ~~~--~-~~---~l~~~~~~-~~~~vl~lDEi~~~~--------~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn 628 (758)
T 3pxi_A 564 HST--S-GG---QLTEKVRR-KPYSVVLLDAIEKAH--------PDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSN 628 (758)
T ss_dssp CCC--C-------CHHHHHH-CSSSEEEEECGGGSC--------HHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEES
T ss_pred ccc--c-cc---hhhHHHHh-CCCeEEEEeCccccC--------HHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCC
Confidence 321 1 11 12222333 456699999999885 68889999999865 358999999
Q ss_pred chh-----Hhh--hhhcChHHHhccc-eEEecCCCHHHHHHHHHHHHHHHhhh-----cCCccChHHHHHHHHHhh
Q 002012 407 LNE-----YRN--YIEKDPALERRFQ-QVFCDQPSVENTISILRGLRERYELH-----HGVKISDSALVSAAVLAD 469 (982)
Q Consensus 407 ~~~-----~~~--~~~~d~al~rRf~-~i~i~~Ps~~e~~~IL~~~~~~~~~~-----~~v~i~~~~l~~~~~~s~ 469 (982)
... +.. .-.+.|+|.+||. .|.|++|+.+++..|++.++..+... ..+.++++++..++..+.
T Consensus 629 ~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~ 704 (758)
T 3pxi_A 629 VGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGV 704 (758)
T ss_dssp SSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGC
T ss_pred CChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCC
Confidence 421 111 1126899999994 88999999999999998877765432 346789999999877543
No 30
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=99.83 E-value=1.8e-20 Score=183.45 Aligned_cols=134 Identities=20% Similarity=0.247 Sum_probs=121.4
Q ss_pred ccHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhcCCCcHHHHHHHHcCCChHHHHHHHHHhhccC-CCCC-CC-CCCCc
Q 002012 97 FTEKAWEGIVGAVDAARVNNQQVVETEHLMKALLEQKDGLARRILTKAGQDNTKVLQATEDFISKQ-PKVT-GA-TSGPI 173 (982)
Q Consensus 97 ft~~a~~~l~~A~~~A~~~~~~~v~~eHlLlaLl~~~~~~~~~iL~~~gv~~~~l~~~~~~~~~~~-~~~~-~~-~~~~~ 173 (982)
||++++++|..|+++|+++||++|+|||||+|||++++ +.++|+++|+|++.+++.++..+++. |... +. .+.++
T Consensus 2 ~t~~~~~~l~~A~~~A~~~~~~~i~~eHlLlaLl~~~~--~~~iL~~~g~~~~~l~~~l~~~l~~~~p~~~~~~~~~~~~ 79 (143)
T 1k6k_A 2 LNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPS--AREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQ 79 (143)
T ss_dssp BCHHHHHHHHHHHHHHHHHTBSEECHHHHHHHHTTCHH--HHHHHHHTTCCHHHHHHHHHHHHHHHSCBCCSSCSCCSCE
T ss_pred CCHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHcCch--HHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCCCCCCCCCC
Confidence 99999999999999999999999999999999998874 88999999999999999999999886 7654 21 24589
Q ss_pred cChhhHHHHHHHHHHHHHcCCCccCHHHHHHHHhcC-CcccccccccccCCHHHHHHHHH
Q 002012 174 VGSNFGLLLSNAQRIKKEMEDDFVSVEHLLLAFLSD-DRFGRLLFNDIRLNEKDLKDAVK 232 (982)
Q Consensus 174 ~s~~~~~vl~~A~~~a~~~g~~~I~~ehLllall~~-~~~a~~lL~~~gi~~~~l~~~i~ 232 (982)
+|+.++++|+.|+.+|..+|++||+++|||+||+++ ++.+.++|+.+|++.+.+++.+.
T Consensus 80 ~s~~~~~~l~~A~~~A~~~~~~~i~~ehLLlall~~~~~~~~~iL~~~gi~~~~l~~~i~ 139 (143)
T 1k6k_A 80 PTLSFQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFIS 139 (143)
T ss_dssp ECHHHHHHHHHHHHHHHSSSCSCBCHHHHHHHHTTCTTSHHHHHHHHTTCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhCcCcHHHHHHHHcCCCHHHHHHHHH
Confidence 999999999999999999999999999999999954 45578999999999999998775
No 31
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.83 E-value=8.6e-20 Score=203.75 Aligned_cols=205 Identities=19% Similarity=0.316 Sum_probs=163.1
Q ss_pred HHHhhcCCCCCcccchHHHHHHHHHhc------------cCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCe
Q 002012 260 TELARSGKLDPVIGRDDEIRRCIQILS------------RRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRK 327 (982)
Q Consensus 260 ~~~~~~~~l~~liG~~~~i~~l~~~L~------------~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~ 327 (982)
....++-++++++|.++.++.+.+.+. ..+..++||+||||||||++|+++|+.+ +.+
T Consensus 9 ~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~----------~~~ 78 (322)
T 3eie_A 9 LSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA----------NST 78 (322)
T ss_dssp EEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH----------TCE
T ss_pred eecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH----------CCC
Confidence 334556688999999999998888761 2345689999999999999999999998 889
Q ss_pred EEEEecccccccccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCC---CchhhHHHHHHhhhc-----CCCe
Q 002012 328 LISLDMASLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQ---SGAMDASNMLKPMLG-----RGEL 399 (982)
Q Consensus 328 v~~l~~~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~---~~~~~~~~~L~~~le-----~g~i 399 (982)
++.++++.+.+ .+.|+.+..++.+|..+.. ..++||||||||.+.+.+.. .....+.+.|+..++ .+.+
T Consensus 79 ~~~v~~~~l~~--~~~g~~~~~~~~~f~~a~~-~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v 155 (322)
T 3eie_A 79 FFSVSSSDLVS--KWMGESEKLVKQLFAMARE-NKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGV 155 (322)
T ss_dssp EEEEEHHHHHT--TTGGGHHHHHHHHHHHHHH-TSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCE
T ss_pred EEEEchHHHhh--cccchHHHHHHHHHHHHHh-cCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCce
Confidence 99999988874 5889999999999998886 56789999999999765422 223345555555553 5689
Q ss_pred EEEEecCchhHhhhhhcChHHHhccc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCCc
Q 002012 400 RCIGATTLNEYRNYIEKDPALERRFQ-QVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLP 478 (982)
Q Consensus 400 ~vI~at~~~~~~~~~~~d~al~rRf~-~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~p 478 (982)
.+|++||.++ .+|+++.|||. .++++.|+.+++..||+.+... .+..+++..+..++..+.+| .+
T Consensus 156 ~vi~atn~~~-----~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~----~~~~~~~~~l~~la~~t~g~-----sg 221 (322)
T 3eie_A 156 LVLGATNIPW-----QLDSAIRRRFERRIYIPLPDLAARTTMFEINVGD----TPCVLTKEDYRTLGAMTEGY-----SG 221 (322)
T ss_dssp EEEEEESCGG-----GSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTT----CCCCCCHHHHHHHHHTTTTC-----CH
T ss_pred EEEEecCChh-----hCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhcc----CCCCCCHHHHHHHHHHcCCC-----CH
Confidence 9999999987 79999999996 8899999999999999887665 56678899999998886654 46
Q ss_pred chhhHHHHHHHHH
Q 002012 479 DKAIDLVDEAAAK 491 (982)
Q Consensus 479 ~~a~~lld~a~~~ 491 (982)
++...++..|...
T Consensus 222 ~di~~l~~~a~~~ 234 (322)
T 3eie_A 222 SDIAVVVKDALMQ 234 (322)
T ss_dssp HHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777776643
No 32
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.82 E-value=1.7e-19 Score=204.39 Aligned_cols=226 Identities=19% Similarity=0.299 Sum_probs=180.5
Q ss_pred cccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEecccccccccccccc
Q 002012 663 KRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRLV 742 (982)
Q Consensus 663 ~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l~ 742 (982)
..++|++..+..+...+...... ..++++.|++||||+.+|+.++...... ..|+.+||+.+.+....+.++
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~~-------~~~vli~GesGtGKe~lAr~ih~~s~r~-~~fv~vnc~~~~~~~~~~~lf 200 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAKS-------KAPVLITGESGTGKEIVARLIHRYSGRK-GAFVDLNCASIPQELAESELF 200 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHTS-------CSCEEEECCTTSSHHHHHHHHHHHHCCC-SCEEEEESSSSCTTTHHHHHH
T ss_pred ccccccchHHHHHHhhhhhhhcc-------chhheEEeCCCchHHHHHHHHHHhcccc-CCcEEEEcccCChHHHHHHhc
Confidence 45789999988888887765321 1239999999999999999999987443 349999999987766667789
Q ss_pred CCCCC-ccccccCCchhHHHhhCCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCChHHHH
Q 002012 743 GAPPG-YVGYEEGGQLTEVVRRRPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYIL 821 (982)
Q Consensus 743 g~~~g-~vg~~~~~~l~~~l~~~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~i~ 821 (982)
|...| +.|.... -.+.+..+.+++||||||+.+++..|..|+++|++|.+....+......++.+|++||.+.....
T Consensus 201 g~~~g~~tga~~~--~~g~~~~a~~gtlfldei~~l~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~v 278 (368)
T 3dzd_A 201 GHEKGAFTGALTR--KKGKLELADQGTLFLDEVGELDQRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNLEEEI 278 (368)
T ss_dssp EECSCSSSSCCCC--EECHHHHTTTSEEEEETGGGSCHHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCHHHHH
T ss_pred CccccccCCcccc--cCChHhhcCCCeEEecChhhCCHHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCCHHHHH
Confidence 88765 3443222 23456677889999999999999999999999999998876665555678999999998766444
Q ss_pred HhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhcccc-ccccCCCCh--hHHHHHHHHHHHHHHHHHHhCCCCccCCH
Q 002012 822 ETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDE-YIVFQPLDS--KEISKIVEIQMNRVKDRLKQKKIDLHYTK 898 (982)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~-ii~F~pl~~--~~l~~il~~~l~~~~~~~~~~~~~l~i~~ 898 (982)
. .+.|+++|++|+.. .|.+|||.+ +|+..+++.+++++..++... ...+++
T Consensus 279 ~------------------------~g~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~--~~~~~~ 332 (368)
T 3dzd_A 279 K------------------------KGNFREDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKN--CFELSE 332 (368)
T ss_dssp H------------------------TTSSCHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCC--CCCBCH
T ss_pred H------------------------cCCccHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCC--CCCcCH
Confidence 3 25699999999976 377999987 899999999999877654332 367999
Q ss_pred HHHHHHHhcCCCCCCCchHHHHHHHHHH
Q 002012 899 EAVTLLGILGFDPNFGARPVKRVIQQLV 926 (982)
Q Consensus 899 ~a~~~L~~~~~~~~~gaR~L~~~i~~~l 926 (982)
++++.|..+.|++|. |+|+++|++.+
T Consensus 333 ~a~~~L~~~~wpGNv--reL~n~i~~~~ 358 (368)
T 3dzd_A 333 ETKEYLMKQEWKGNV--RELKNLIERAV 358 (368)
T ss_dssp HHHHHHHTCCCTTHH--HHHHHHHHHHH
T ss_pred HHHHHHHhCCCCcHH--HHHHHHHHHHH
Confidence 999999999999876 99999999844
No 33
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.82 E-value=1.5e-18 Score=216.02 Aligned_cols=179 Identities=18% Similarity=0.260 Sum_probs=132.7
Q ss_pred CCcccchHHHHHHHHHhcc---------CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEeccccccc
Q 002012 269 DPVIGRDDEIRRCIQILSR---------RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAG 339 (982)
Q Consensus 269 ~~liG~~~~i~~l~~~L~~---------~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~ 339 (982)
..++|+++.++.+...+.. ++..++||+||||||||++|+++|+.+ +.+++.+|++.+...
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l----------~~~~~~i~~s~~~~~ 527 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL----------GIELLRFDMSEYMER 527 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH----------TCEEEEEEGGGCSSS
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh----------cCCEEEEechhhcch
Confidence 4689999999888876653 123379999999999999999999998 678999999887542
Q ss_pred ----------ccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCCC-----------
Q 002012 340 ----------TCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRGE----------- 398 (982)
Q Consensus 340 ----------~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g~----------- 398 (982)
..|.|..+. ..+...+.. ..+.|||||||+.+. .++++.|+++++.|.
T Consensus 528 ~~~~~l~g~~~g~~g~~~~--~~l~~~~~~-~~~~vl~lDEi~~~~--------~~~~~~Ll~~le~~~~~~~~g~~~~~ 596 (758)
T 1r6b_X 528 HTVSRLIGAPPGYVGFDQG--GLLTDAVIK-HPHAVLLLDEIEKAH--------PDVFNILLQVMDNGTLTDNNGRKADF 596 (758)
T ss_dssp SCCSSSCCCCSCSHHHHHT--THHHHHHHH-CSSEEEEEETGGGSC--------HHHHHHHHHHHHHSEEEETTTEEEEC
T ss_pred hhHhhhcCCCCCCcCcccc--chHHHHHHh-CCCcEEEEeCccccC--------HHHHHHHHHHhcCcEEEcCCCCEEec
Confidence 123332222 122333443 557899999999875 678999999998653
Q ss_pred --eEEEEecCchh---------Hh---------h--hhhcChHHHhccc-eEEecCCCHHHHHHHHHHHHHHHhhh----
Q 002012 399 --LRCIGATTLNE---------YR---------N--YIEKDPALERRFQ-QVFCDQPSVENTISILRGLRERYELH---- 451 (982)
Q Consensus 399 --i~vI~at~~~~---------~~---------~--~~~~d~al~rRf~-~i~i~~Ps~~e~~~IL~~~~~~~~~~---- 451 (982)
+++|+|||... |. . .-.++|+|.+||. .|.|++|+.+++..|++..+.++...
T Consensus 597 ~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~ 676 (758)
T 1r6b_X 597 RNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQK 676 (758)
T ss_dssp TTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHC
Confidence 56999998732 00 0 0146899999995 88899999999999998877765431
Q ss_pred -cCCccChHHHHHHHHHh
Q 002012 452 -HGVKISDSALVSAAVLA 468 (982)
Q Consensus 452 -~~v~i~~~~l~~~~~~s 468 (982)
..+.++++++..++..+
T Consensus 677 ~~~~~~~~~a~~~l~~~~ 694 (758)
T 1r6b_X 677 GVSLEVSQEARNWLAEKG 694 (758)
T ss_dssp TEEEEECHHHHHHHHHHH
T ss_pred CcEEEeCHHHHHHHHHhC
Confidence 23678999999988775
No 34
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.82 E-value=3e-19 Score=201.82 Aligned_cols=208 Identities=18% Similarity=0.310 Sum_probs=158.1
Q ss_pred hhHHHhhcCCCCCcccchHHHHHHHHHhc------------cCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCC
Q 002012 258 DLTELARSGKLDPVIGRDDEIRRCIQILS------------RRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQN 325 (982)
Q Consensus 258 ~l~~~~~~~~l~~liG~~~~i~~l~~~L~------------~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~ 325 (982)
.+....++.+|++++|.++.++.+.+.+. .....++||+||||||||++|+++|..+ +
T Consensus 40 ~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~----------~ 109 (355)
T 2qp9_X 40 AILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA----------N 109 (355)
T ss_dssp -------CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH----------T
T ss_pred hhcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh----------C
Confidence 34556677889999999999888887662 1345689999999999999999999998 8
Q ss_pred CeEEEEecccccccccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCC---CchhhHHHHHHhhhc-----CC
Q 002012 326 RKLISLDMASLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQ---SGAMDASNMLKPMLG-----RG 397 (982)
Q Consensus 326 ~~v~~l~~~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~---~~~~~~~~~L~~~le-----~g 397 (982)
.+++.++++++.. .+.|+.+..++.+|..+.. ..++||||||+|.+.+.+.. .....+.+.|+..++ ..
T Consensus 110 ~~~~~v~~~~l~~--~~~g~~~~~~~~~f~~a~~-~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~ 186 (355)
T 2qp9_X 110 STFFSVSSSDLVS--KWMGESEKLVKQLFAMARE-NKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQ 186 (355)
T ss_dssp CEEEEEEHHHHHS--CC---CHHHHHHHHHHHHH-TSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---C
T ss_pred CCEEEeeHHHHhh--hhcchHHHHHHHHHHHHHH-cCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCC
Confidence 8999999988874 4778888999999988875 56789999999999765322 122344555655554 46
Q ss_pred CeEEEEecCchhHhhhhhcChHHHhccc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCC
Q 002012 398 ELRCIGATTLNEYRNYIEKDPALERRFQ-QVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERF 476 (982)
Q Consensus 398 ~i~vI~at~~~~~~~~~~~d~al~rRf~-~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~ 476 (982)
.+.||++||.++ .++++++|||+ .++++.|+.+++..||+.++.. .+..+++..+..++..+.+|
T Consensus 187 ~v~vI~atn~~~-----~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~----~~~~~~~~~l~~la~~t~G~----- 252 (355)
T 2qp9_X 187 GVLVLGATNIPW-----QLDSAIRRRFERRIYIPLPDLAARTTMFEINVGD----TPSVLTKEDYRTLGAMTEGY----- 252 (355)
T ss_dssp CEEEEEEESCGG-----GSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTT----SCBCCCHHHHHHHHHHTTTC-----
T ss_pred CeEEEeecCCcc-----cCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhh----CCCCCCHHHHHHHHHHcCCC-----
Confidence 799999999987 78999999996 8899999999999999877665 45567888999999886654
Q ss_pred CcchhhHHHHHHHHHh
Q 002012 477 LPDKAIDLVDEAAAKL 492 (982)
Q Consensus 477 ~p~~a~~lld~a~~~~ 492 (982)
.+.+...++++|+..+
T Consensus 253 sg~dl~~l~~~A~~~a 268 (355)
T 2qp9_X 253 SGSDIAVVVKDALMQP 268 (355)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 5678888888887553
No 35
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.81 E-value=5.3e-19 Score=197.02 Aligned_cols=202 Identities=20% Similarity=0.313 Sum_probs=159.8
Q ss_pred hcCCCCCcccchHHHHHHHHHhc------------cCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEE
Q 002012 264 RSGKLDPVIGRDDEIRRCIQILS------------RRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISL 331 (982)
Q Consensus 264 ~~~~l~~liG~~~~i~~l~~~L~------------~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l 331 (982)
++-++++++|.++.++.+.+.+. ..+++++||+||||||||++|+++|+.+ .+..++.+
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~---------~~~~~~~i 77 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA---------NNSTFFSI 77 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHT---------TSCEEEEE
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHc---------CCCcEEEE
Confidence 34578899999998888777552 2345789999999999999999999986 26789999
Q ss_pred ecccccccccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCc---hhhHHHHHHhhhc-----CCCeEEEE
Q 002012 332 DMASLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSG---AMDASNMLKPMLG-----RGELRCIG 403 (982)
Q Consensus 332 ~~~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~---~~~~~~~L~~~le-----~g~i~vI~ 403 (982)
+++++.. ++.|+.+..++.+|..+.. ..++||||||+|.+.+.+.... ...+.+.|+..++ .+.+.+|+
T Consensus 78 ~~~~l~~--~~~g~~~~~~~~lf~~a~~-~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~ 154 (322)
T 1xwi_A 78 SSSDLVS--KWLGESEKLVKNLFQLARE-NKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLG 154 (322)
T ss_dssp ECCSSCC--SSCCSCHHHHHHHHHHHHH-TSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEE
T ss_pred EhHHHHh--hhhhHHHHHHHHHHHHHHh-cCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEE
Confidence 9988874 5789999999999998876 5678999999999986654322 2234444544443 46899999
Q ss_pred ecCchhHhhhhhcChHHHhccc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCCcchhh
Q 002012 404 ATTLNEYRNYIEKDPALERRFQ-QVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLPDKAI 482 (982)
Q Consensus 404 at~~~~~~~~~~~d~al~rRf~-~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~p~~a~ 482 (982)
+||.++ .+|++++|||+ .++++.|+.+++..||+.+... .+..+++..+..++..+.+| .+.+..
T Consensus 155 atn~~~-----~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~----~~~~l~~~~l~~la~~t~G~-----sgadl~ 220 (322)
T 1xwi_A 155 ATNIPW-----VLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGT----TQNSLTEADFRELGRKTDGY-----SGADIS 220 (322)
T ss_dssp EESCTT-----TSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTT----CCBCCCHHHHHHHHHTCTTC-----CHHHHH
T ss_pred ecCCcc-----cCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHcCCC-----CHHHHH
Confidence 999987 79999999996 8999999999999999887654 45567888899988886554 467788
Q ss_pred HHHHHHHHH
Q 002012 483 DLVDEAAAK 491 (982)
Q Consensus 483 ~lld~a~~~ 491 (982)
.++++|+..
T Consensus 221 ~l~~~A~~~ 229 (322)
T 1xwi_A 221 IIVRDALMQ 229 (322)
T ss_dssp HHHHHHHTH
T ss_pred HHHHHHHHH
Confidence 888877743
No 36
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.81 E-value=3.9e-19 Score=203.76 Aligned_cols=207 Identities=24% Similarity=0.387 Sum_probs=156.9
Q ss_pred hhhHHHhhcCCCCCcccchHHHHHHHHHhc------------cCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCC
Q 002012 257 NDLTELARSGKLDPVIGRDDEIRRCIQILS------------RRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQ 324 (982)
Q Consensus 257 ~~l~~~~~~~~l~~liG~~~~i~~l~~~L~------------~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~ 324 (982)
..|.+.+++..|++++|++..++.+.+.+. .....++||+||||||||++|+++|..+
T Consensus 103 ~~~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~---------- 172 (389)
T 3vfd_A 103 NEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES---------- 172 (389)
T ss_dssp GTTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT----------
T ss_pred hhhhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh----------
Confidence 355666778899999999999999988762 2345789999999999999999999987
Q ss_pred CCeEEEEecccccccccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCC---chhhHHHHHHhhhc------
Q 002012 325 NRKLISLDMASLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQS---GAMDASNMLKPMLG------ 395 (982)
Q Consensus 325 ~~~v~~l~~~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~---~~~~~~~~L~~~le------ 395 (982)
+.+++.++++.+.. .|.|+.+..+..+|..+.. ..++||||||||.+....... ....+.+.|+..++
T Consensus 173 ~~~~~~v~~~~l~~--~~~g~~~~~~~~~~~~a~~-~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 249 (389)
T 3vfd_A 173 NATFFNISAASLTS--KYVGEGEKLVRALFAVARE-LQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAG 249 (389)
T ss_dssp TCEEEEECSCCC---------CHHHHHHHHHHHHH-SSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC---
T ss_pred cCcEEEeeHHHhhc--cccchHHHHHHHHHHHHHh-cCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccC
Confidence 88999999998884 4788888889999998876 456799999999997554321 12345555555554
Q ss_pred CCCeEEEEecCchhHhhhhhcChHHHhccc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhcc
Q 002012 396 RGELRCIGATTLNEYRNYIEKDPALERRFQ-QVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITE 474 (982)
Q Consensus 396 ~g~i~vI~at~~~~~~~~~~~d~al~rRf~-~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~ 474 (982)
..+++||++||..+ .+++++.|||. .+++..|+.+++..||+.++.. ++..++++.+..++..+.+|.
T Consensus 250 ~~~v~vI~atn~~~-----~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~----~~~~l~~~~~~~la~~~~g~~-- 318 (389)
T 3vfd_A 250 DDRVLVMGATNRPQ-----ELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCK----QGSPLTQKELAQLARMTDGYS-- 318 (389)
T ss_dssp --CEEEEEEESCGG-----GCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTT----SCCCSCHHHHHHHHHHTTTCC--
T ss_pred CCCEEEEEecCCch-----hcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHHcCCCC--
Confidence 45799999999987 78999999997 7999999999999999887765 577899999999998876553
Q ss_pred CCCcchhhHHHHHHHH
Q 002012 475 RFLPDKAIDLVDEAAA 490 (982)
Q Consensus 475 ~~~p~~a~~lld~a~~ 490 (982)
+.+...|++.|..
T Consensus 319 ---~~~l~~L~~~a~~ 331 (389)
T 3vfd_A 319 ---GSDLTALAKDAAL 331 (389)
T ss_dssp ---HHHHHHHHHHHTT
T ss_pred ---HHHHHHHHHHHHH
Confidence 4555666665543
No 37
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.81 E-value=1.2e-18 Score=197.16 Aligned_cols=209 Identities=19% Similarity=0.306 Sum_probs=164.7
Q ss_pred hhhhhHHHhhcCCCCCcccchHHHHHHHHHhc------------cCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCC
Q 002012 255 YGNDLTELARSGKLDPVIGRDDEIRRCIQILS------------RRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPET 322 (982)
Q Consensus 255 ~~~~l~~~~~~~~l~~liG~~~~i~~l~~~L~------------~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~ 322 (982)
....+....++..+++++|+++.++.+.+.+. .....++||+||||||||++|+++|..+
T Consensus 70 i~~~i~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~-------- 141 (357)
T 3d8b_A 70 IMNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS-------- 141 (357)
T ss_dssp HHHHTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT--------
T ss_pred HHhhcccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc--------
Confidence 33445555667789999999999998888763 2456789999999999999999999988
Q ss_pred CCCCeEEEEecccccccccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCC---chhhHHHHHHhhhc----
Q 002012 323 LQNRKLISLDMASLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQS---GAMDASNMLKPMLG---- 395 (982)
Q Consensus 323 l~~~~v~~l~~~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~---~~~~~~~~L~~~le---- 395 (982)
+..++.++++.+.. .+.|+.+..++.++..+.. ..++||||||||.+....... ....+.+.|+..++
T Consensus 142 --~~~~~~i~~~~l~~--~~~g~~~~~~~~~~~~a~~-~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~ 216 (357)
T 3d8b_A 142 --GATFFSISASSLTS--KWVGEGEKMVRALFAVARC-QQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATT 216 (357)
T ss_dssp --TCEEEEEEGGGGCC--SSTTHHHHHHHHHHHHHHH-TCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC---
T ss_pred --CCeEEEEehHHhhc--cccchHHHHHHHHHHHHHh-cCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccc
Confidence 88999999998874 4788888889999988775 567899999999997654321 12344555555554
Q ss_pred --CCCeEEEEecCchhHhhhhhcChHHHhccc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhh
Q 002012 396 --RGELRCIGATTLNEYRNYIEKDPALERRFQ-QVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYI 472 (982)
Q Consensus 396 --~g~i~vI~at~~~~~~~~~~~d~al~rRf~-~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i 472 (982)
..++.+|++||..+ .+++++.|||. .++++.|+.+++..|++.+... .+..++++.+..++..+.+|
T Consensus 217 ~~~~~v~vI~atn~~~-----~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~----~~~~l~~~~l~~la~~t~G~- 286 (357)
T 3d8b_A 217 SSEDRILVVGATNRPQ-----EIDEAARRRLVKRLYIPLPEASARKQIVINLMSK----EQCCLSEEEIEQIVQQSDAF- 286 (357)
T ss_dssp -CCCCEEEEEEESCGG-----GBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHT----SCBCCCHHHHHHHHHHTTTC-
T ss_pred cCCCCEEEEEecCChh-----hCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhh----cCCCccHHHHHHHHHHcCCC-
Confidence 35799999999987 78999999997 8899999999999999887765 46778999999999886654
Q ss_pred ccCCCcchhhHHHHHHHH
Q 002012 473 TERFLPDKAIDLVDEAAA 490 (982)
Q Consensus 473 ~~~~~p~~a~~lld~a~~ 490 (982)
.+++...|++.|..
T Consensus 287 ----s~~dl~~l~~~a~~ 300 (357)
T 3d8b_A 287 ----SGADMTQLCREASL 300 (357)
T ss_dssp ----CHHHHHHHHHHHHT
T ss_pred ----CHHHHHHHHHHHHH
Confidence 45777777776653
No 38
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.80 E-value=5.8e-19 Score=195.71 Aligned_cols=222 Identities=22% Similarity=0.316 Sum_probs=165.8
Q ss_pred HHHHHHHHhhhcccccchHHHHHHHHHHHHHh-------cCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCC----
Q 002012 652 EKLVMLEEVLHKRVIGQDIAVKSVADAIRRSR-------AGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNT---- 720 (982)
Q Consensus 652 ~~l~~l~~~l~~~iiGq~~a~~~l~~~i~~~~-------~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~---- 720 (982)
..+..+...+...++|++.+++.|.+.+.... .|+..+ ++..++||+||||||||++|+++++.+...
T Consensus 20 ~~~~~~~~~l~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~-~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~ 98 (309)
T 3syl_A 20 SGAKEVLEELDRELIGLKPVKDRIRETAALLLVERARQKLGLAHE-TPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVR 98 (309)
T ss_dssp TTHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSS-CCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSS
T ss_pred ccHHHHHHHHHHHccChHHHHHHHHHHHHHHHhHHHHHHcCCCCC-CCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcC
Confidence 34566777788899999999999988775432 344432 344469999999999999999999988432
Q ss_pred CCceEEEeccccccccccccccCCCCCccccccCCchhHHHhhCCCeEEEEcccccc---------CHHHHHHHHHhhhc
Q 002012 721 ENALVRIDMSEYMEKHSVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEIEKA---------HQDVFNILLQLLDD 791 (982)
Q Consensus 721 ~~~~v~i~~s~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~~~~~Vl~lDEidkl---------~~~~~~~Ll~~le~ 791 (982)
..+++.++++++... +.|... ..+.+.+..+.++||||||+|.+ ++.+++.|+++|++
T Consensus 99 ~~~~~~~~~~~l~~~------------~~g~~~-~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~ 165 (309)
T 3syl_A 99 KGHLVSVTRDDLVGQ------------YIGHTA-PKTKEVLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMEN 165 (309)
T ss_dssp SCCEEEECGGGTCCS------------STTCHH-HHHHHHHHHHTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHH
T ss_pred CCcEEEEcHHHhhhh------------cccccH-HHHHHHHHhcCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhc
Confidence 347888888766321 222221 12455666667889999999977 89999999999997
Q ss_pred CceecCCCcEEecccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhH
Q 002012 792 GRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKE 871 (982)
Q Consensus 792 g~~~d~~g~~~~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~ 871 (982)
+. .+++||+++|....... ..+.|+|.+||+.+|.|+|++.++
T Consensus 166 ~~-----------~~~~~i~~~~~~~~~~~--------------------------~~~~~~l~~R~~~~i~~~~~~~~~ 208 (309)
T 3syl_A 166 NR-----------DDLVVILAGYADRMENF--------------------------FQSNPGFRSRIAHHIEFPDYSDEE 208 (309)
T ss_dssp CT-----------TTCEEEEEECHHHHHHH--------------------------HHHSTTHHHHEEEEEEECCCCHHH
T ss_pred CC-----------CCEEEEEeCChHHHHHH--------------------------HhhCHHHHHhCCeEEEcCCcCHHH
Confidence 43 46789999986421100 114689999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCccCCHHHHHHHHhc-------CCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 002012 872 ISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGIL-------GFDPNFGARPVKRVIQQLVENEIAVAIL 935 (982)
Q Consensus 872 l~~il~~~l~~~~~~~~~~~~~l~i~~~a~~~L~~~-------~~~~~~gaR~L~~~i~~~l~~~la~~~l 935 (982)
+.+|+...+.. . .+.+++++++.|..+ .|.+ ++|.++++++..+.....+.+-
T Consensus 209 ~~~il~~~l~~-------~--~~~~~~~~~~~l~~~~~~~~~~~~~g--n~r~l~~~l~~a~~~~~~r~~~ 268 (309)
T 3syl_A 209 LFEIAGHMLDD-------Q--NYQMTPEAETALRAYIGLRRNQPHFA--NARSIRNALDRARLRQANRLFT 268 (309)
T ss_dssp HHHHHHHHHHH-------T--TCEECHHHHHHHHHHHHHHTTSSSCC--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-------c--CCCCCHHHHHHHHHHHHHhccCCCCC--cHHHHHHHHHHHHHHHHHHHHh
Confidence 99999998876 2 267999999998875 3433 3799999999988776665544
No 39
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.79 E-value=6e-19 Score=204.48 Aligned_cols=201 Identities=21% Similarity=0.307 Sum_probs=159.3
Q ss_pred hhhHHHhhcCCCCCcccchHHH---HHHHHHhccCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEec
Q 002012 257 NDLTELARSGKLDPVIGRDDEI---RRCIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDM 333 (982)
Q Consensus 257 ~~l~~~~~~~~l~~liG~~~~i---~~l~~~L~~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~ 333 (982)
.+|.++++|.+|++++|+++.+ ..+...+.....+++||+||||||||++|+.+++.+ +..++.+++
T Consensus 14 ~pla~r~rP~~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~----------~~~f~~l~a 83 (447)
T 3pvs_A 14 QPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA----------NADVERISA 83 (447)
T ss_dssp CCHHHHTCCCSTTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT----------TCEEEEEET
T ss_pred CChHHHhCCCCHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh----------CCCeEEEEe
Confidence 5899999999999999999988 777787777777899999999999999999999988 778888875
Q ss_pred ccccccccccccHHHHHHHHHHHHHh---cCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCCCeEEEEecCchhH
Q 002012 334 ASLVAGTCYRGDFEKRLKAVLKEVTK---SNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRGELRCIGATTLNEY 410 (982)
Q Consensus 334 ~~l~~~~~~~g~~e~~l~~l~~~~~~---~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g~i~vI~at~~~~~ 410 (982)
.... ...++.++..+.. ...+.||||||||.+.. ..++.|++.++.+.+++|++||.+.+
T Consensus 84 ~~~~---------~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~--------~~q~~LL~~le~~~v~lI~att~n~~ 146 (447)
T 3pvs_A 84 VTSG---------VKEIREAIERARQNRNAGRRTILFVDEVHRFNK--------SQQDAFLPHIEDGTITFIGATTENPS 146 (447)
T ss_dssp TTCC---------HHHHHHHHHHHHHHHHTTCCEEEEEETTTCC--------------CCHHHHHTTSCEEEEEESSCGG
T ss_pred ccCC---------HHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCH--------HHHHHHHHHHhcCceEEEecCCCCcc
Confidence 3211 2234444444432 24567999999999863 34567889999999999999987763
Q ss_pred hhhhhcChHHHhccceEEecCCCHHHHHHHHHHHHHHHhhh---cCCccChHHHHHHHHHhhhhhccCCCcchhhHHHHH
Q 002012 411 RNYIEKDPALERRFQQVFCDQPSVENTISILRGLRERYELH---HGVKISDSALVSAAVLADRYITERFLPDKAIDLVDE 487 (982)
Q Consensus 411 ~~~~~~d~al~rRf~~i~i~~Ps~~e~~~IL~~~~~~~~~~---~~v~i~~~~l~~~~~~s~r~i~~~~~p~~a~~lld~ 487 (982)
..++++|.+||..+.+..|+.+++..+++.....+... .++.++++++..++.++.+. .+.+.++++.
T Consensus 147 ---~~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd------~R~lln~Le~ 217 (447)
T 3pvs_A 147 ---FELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGD------ARRALNTLEM 217 (447)
T ss_dssp ---GSSCHHHHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSC------HHHHHHHHHH
T ss_pred ---cccCHHHhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCC------HHHHHHHHHH
Confidence 47899999999999999999999999998888764432 45789999999999997654 3788888888
Q ss_pred HHHHhh
Q 002012 488 AAAKLK 493 (982)
Q Consensus 488 a~~~~~ 493 (982)
++..+.
T Consensus 218 a~~~a~ 223 (447)
T 3pvs_A 218 MADMAE 223 (447)
T ss_dssp HHHHSC
T ss_pred HHHhcc
Confidence 887654
No 40
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.78 E-value=4.8e-18 Score=187.32 Aligned_cols=206 Identities=23% Similarity=0.340 Sum_probs=158.8
Q ss_pred hhHHHhhcCCCCCcccchHHHHHHHHHhcc------------CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCC
Q 002012 258 DLTELARSGKLDPVIGRDDEIRRCIQILSR------------RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQN 325 (982)
Q Consensus 258 ~l~~~~~~~~l~~liG~~~~i~~l~~~L~~------------~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~ 325 (982)
.+....++..+++++|+++.++.+.+.+.. .+..+++|+||||||||++|++++..+ +
T Consensus 10 ~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~----------~ 79 (297)
T 3b9p_A 10 EIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC----------S 79 (297)
T ss_dssp TTBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT----------T
T ss_pred HhccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh----------C
Confidence 344555677899999999999888876522 246789999999999999999999988 7
Q ss_pred CeEEEEecccccccccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCC---chhhHHHHHHhhhcC------
Q 002012 326 RKLISLDMASLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQS---GAMDASNMLKPMLGR------ 396 (982)
Q Consensus 326 ~~v~~l~~~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~---~~~~~~~~L~~~le~------ 396 (982)
.+++.++++.+.. .+.|..+..++.++..+.. ..+.||||||+|.+....... ....+.+.|+..++.
T Consensus 80 ~~~~~i~~~~l~~--~~~~~~~~~~~~~~~~~~~-~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 156 (297)
T 3b9p_A 80 ATFLNISAASLTS--KYVGDGEKLVRALFAVARH-MQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPD 156 (297)
T ss_dssp CEEEEEESTTTSS--SSCSCHHHHHHHHHHHHHH-TCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC----
T ss_pred CCeEEeeHHHHhh--cccchHHHHHHHHHHHHHH-cCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCC
Confidence 8999999988874 4678888888888888776 567899999999997654321 123444455555541
Q ss_pred -CCeEEEEecCchhHhhhhhcChHHHhccc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhcc
Q 002012 397 -GELRCIGATTLNEYRNYIEKDPALERRFQ-QVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITE 474 (982)
Q Consensus 397 -g~i~vI~at~~~~~~~~~~~d~al~rRf~-~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~ 474 (982)
..+.+|++||.++ .+++++.+||. .++++.|+.+++..|++.+... .+..++++.+..++..+.+|
T Consensus 157 ~~~v~vi~~tn~~~-----~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~----~~~~~~~~~~~~la~~~~g~--- 224 (297)
T 3b9p_A 157 GDRIVVLAATNRPQ-----ELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQK----QGSPLDTEALRRLAKITDGY--- 224 (297)
T ss_dssp --CEEEEEEESCGG-----GBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGG----GSCCSCHHHHHHHHHHTTTC---
T ss_pred CCcEEEEeecCChh-----hCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHHcCCC---
Confidence 4689999999987 78999999996 8899999999999999877665 46678899999998886654
Q ss_pred CCCcchhhHHHHHHHH
Q 002012 475 RFLPDKAIDLVDEAAA 490 (982)
Q Consensus 475 ~~~p~~a~~lld~a~~ 490 (982)
.+.+...+++.|..
T Consensus 225 --~~~~l~~l~~~a~~ 238 (297)
T 3b9p_A 225 --SGSDLTALAKDAAL 238 (297)
T ss_dssp --CHHHHHHHHHHHTT
T ss_pred --CHHHHHHHHHHHHH
Confidence 33455567666653
No 41
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.77 E-value=2.9e-17 Score=179.85 Aligned_cols=203 Identities=23% Similarity=0.378 Sum_probs=156.4
Q ss_pred cCCCCCcccchHHHHHHHHHhcc-------------CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEE
Q 002012 265 SGKLDPVIGRDDEIRRCIQILSR-------------RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISL 331 (982)
Q Consensus 265 ~~~l~~liG~~~~i~~l~~~L~~-------------~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l 331 (982)
+-.+++++|+++.++.+.+.+.. ....++||+||||||||++|+++|..+ +.+++.+
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~----------~~~~~~v 82 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET----------NATFIRV 82 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT----------TCEEEEE
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh----------CCCEEEE
Confidence 34788999999999888877643 466789999999999999999999998 8899999
Q ss_pred ecccccccccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCC---chhhHHHHHHhhhc-------CCCeEE
Q 002012 332 DMASLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQS---GAMDASNMLKPMLG-------RGELRC 401 (982)
Q Consensus 332 ~~~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~---~~~~~~~~L~~~le-------~g~i~v 401 (982)
+++.+.. .+.|.....+..++..+.. ..++||||||+|.+.+..... +.....+.|..++. .+.+.+
T Consensus 83 ~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~v 159 (285)
T 3h4m_A 83 VGSELVK--KFIGEGASLVKDIFKLAKE-KAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKI 159 (285)
T ss_dssp EGGGGCC--CSTTHHHHHHHHHHHHHHH-TCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEE
T ss_pred ehHHHHH--hccchHHHHHHHHHHHHHH-cCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEE
Confidence 9988874 4788888999999988876 567899999999998654322 23344444444432 458999
Q ss_pred EEecCchhHhhhhhcChHHHh--ccc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCCc
Q 002012 402 IGATTLNEYRNYIEKDPALER--RFQ-QVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLP 478 (982)
Q Consensus 402 I~at~~~~~~~~~~~d~al~r--Rf~-~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~p 478 (982)
|+|||..+ .+++++.+ ||. .+.++.|+.+++.+|++.....+ +.. .+..+..++..+.+ +.+
T Consensus 160 I~ttn~~~-----~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~----~~~-~~~~~~~l~~~~~g-----~~~ 224 (285)
T 3h4m_A 160 IGATNRPD-----ILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKM----NLA-EDVNLEEIAKMTEG-----CVG 224 (285)
T ss_dssp EEECSCGG-----GBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTS----CBC-TTCCHHHHHHHCTT-----CCH
T ss_pred EEeCCCch-----hcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcC----CCC-CcCCHHHHHHHcCC-----CCH
Confidence 99999987 78999999 996 89999999999999998776542 221 22235666666443 457
Q ss_pred chhhHHHHHHHHHhhhh
Q 002012 479 DKAIDLVDEAAAKLKME 495 (982)
Q Consensus 479 ~~a~~lld~a~~~~~~~ 495 (982)
++...+++.|...+...
T Consensus 225 ~~i~~l~~~a~~~a~~~ 241 (285)
T 3h4m_A 225 AELKAICTEAGMNAIRE 241 (285)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 78888888888776544
No 42
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.77 E-value=4.6e-18 Score=197.76 Aligned_cols=204 Identities=20% Similarity=0.314 Sum_probs=154.8
Q ss_pred HhhcCCCCCcccchHHHHHHHHHhc------------cCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEE
Q 002012 262 LARSGKLDPVIGRDDEIRRCIQILS------------RRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLI 329 (982)
Q Consensus 262 ~~~~~~l~~liG~~~~i~~l~~~L~------------~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~ 329 (982)
..++-.|++++|.++.++.+.+.+. ..+.+++||+||||||||++|+++|..+ .+..++
T Consensus 127 ~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~---------~~~~~~ 197 (444)
T 2zan_A 127 ERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA---------NNSTFF 197 (444)
T ss_dssp CCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC---------CSSEEE
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc---------CCCCEE
Confidence 3456688999999998888887652 2355789999999999999999999986 267899
Q ss_pred EEecccccccccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCC---chhhHHHHHHhhhc-----CCCeEE
Q 002012 330 SLDMASLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQS---GAMDASNMLKPMLG-----RGELRC 401 (982)
Q Consensus 330 ~l~~~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~---~~~~~~~~L~~~le-----~g~i~v 401 (982)
.++++++.. .+.|+.+..++.+|..+.. ..++||||||||.+.+.+... ....+.+.|+..++ ...+.|
T Consensus 198 ~v~~~~l~~--~~~g~~~~~~~~~f~~a~~-~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~v 274 (444)
T 2zan_A 198 SISSSDLVS--KWLGESEKLVKNLFQLARE-NKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILV 274 (444)
T ss_dssp EECCC-----------CCCTHHHHHHHHHH-SCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEE
T ss_pred EEeHHHHHh--hhcchHHHHHHHHHHHHHH-cCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEE
Confidence 999888874 4677777788889988775 567899999999997654322 22345566666553 467999
Q ss_pred EEecCchhHhhhhhcChHHHhccc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCCcch
Q 002012 402 IGATTLNEYRNYIEKDPALERRFQ-QVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLPDK 480 (982)
Q Consensus 402 I~at~~~~~~~~~~~d~al~rRf~-~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~p~~ 480 (982)
|+|||.++ .+|++++|||+ .+.++.|+.+++..||+.+... .+..+++..+..++..+.+| .+.+
T Consensus 275 I~atn~~~-----~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~----~~~~l~~~~l~~la~~t~G~-----sgad 340 (444)
T 2zan_A 275 LGATNIPW-----VLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGS----TQNSLTEADFQELGRKTDGY-----SGAD 340 (444)
T ss_dssp EEEESCGG-----GSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTT----SCEECCHHHHHHHHHHTTTC-----CHHH
T ss_pred EecCCCcc-----ccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHcCCC-----CHHH
Confidence 99999987 79999999996 8899999999999999887654 45567888999999886654 4678
Q ss_pred hhHHHHHHHHH
Q 002012 481 AIDLVDEAAAK 491 (982)
Q Consensus 481 a~~lld~a~~~ 491 (982)
...++++|+..
T Consensus 341 l~~l~~~a~~~ 351 (444)
T 2zan_A 341 ISIIVRDALMQ 351 (444)
T ss_dssp HHHHHHHHHTH
T ss_pred HHHHHHHHHHH
Confidence 88888777743
No 43
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.77 E-value=3.2e-18 Score=192.18 Aligned_cols=200 Identities=24% Similarity=0.340 Sum_probs=148.8
Q ss_pred hhhcccccchHHHHHHHHHHHHH--------hcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccc
Q 002012 660 VLHKRVIGQDIAVKSVADAIRRS--------RAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSE 731 (982)
Q Consensus 660 ~l~~~iiGq~~a~~~l~~~i~~~--------~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~ 731 (982)
.-|++|.|.+++++.|.+++... ..|... |. .+||+||||||||++|+++|..+ +.+|+.+++++
T Consensus 145 v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~---pr-GvLL~GPPGTGKTllAkAiA~e~---~~~f~~v~~s~ 217 (405)
T 4b4t_J 145 STYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQ---PK-GVILYGPPGTGKTLLARAVAHHT---DCKFIRVSGAE 217 (405)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCC---CC-CEEEESCSSSSHHHHHHHHHHHH---TCEEEEEEGGG
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCC---CC-ceEEeCCCCCCHHHHHHHHHHhh---CCCceEEEhHH
Confidence 45789999999999999988642 224332 23 49999999999999999999998 88999999998
Q ss_pred cccccccccccCCCCCccccccC--CchhHHHhhCCCeEEEEccccccCH--------------HHHHHHHHhhhcCcee
Q 002012 732 YMEKHSVSRLVGAPPGYVGYEEG--GQLTEVVRRRPYSVVLFDEIEKAHQ--------------DVFNILLQLLDDGRIT 795 (982)
Q Consensus 732 ~~~~~~~~~l~g~~~g~vg~~~~--~~l~~~l~~~~~~Vl~lDEidkl~~--------------~~~~~Ll~~le~g~~~ 795 (982)
+... |+|..+. +.++...+...++||||||||.+.+ .+.+.||..||.-.
T Consensus 218 l~sk------------~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~-- 283 (405)
T 4b4t_J 218 LVQK------------YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFE-- 283 (405)
T ss_dssp GSCS------------STTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTT--
T ss_pred hhcc------------ccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccC--
Confidence 7543 4554332 4567778888899999999998742 25667777776311
Q ss_pred cCCCcEEecccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHh--ccccccccCCCChhHHH
Q 002012 796 DSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLN--RIDEYIVFQPLDSKEIS 873 (982)
Q Consensus 796 d~~g~~~~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~--Rid~ii~F~pl~~~~l~ 873 (982)
...+++||+|||.... ++|+|+. |||..|.|++++.++..
T Consensus 284 -------~~~~V~vIaATNrpd~-------------------------------LDpAllRpGRfD~~I~i~lPd~~~R~ 325 (405)
T 4b4t_J 284 -------TSKNIKIIMATNRLDI-------------------------------LDPALLRPGRIDRKIEFPPPSVAARA 325 (405)
T ss_dssp -------CCCCEEEEEEESCSSS-------------------------------SCHHHHSTTSSCCEEECCCCCHHHHH
T ss_pred -------CCCCeEEEeccCChhh-------------------------------CCHhHcCCCcCceEEEcCCcCHHHHH
Confidence 1246899999997653 7889986 99999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHH
Q 002012 874 KIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEI 930 (982)
Q Consensus 874 ~il~~~l~~~~~~~~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~l~~~l 930 (982)
+|++.++++ ....-.++ ++.|+.. ...|.+++|+.++......++
T Consensus 326 ~Il~~~~~~-------~~l~~dvd---l~~lA~~--t~G~SGADi~~l~~eA~~~Ai 370 (405)
T 4b4t_J 326 EILRIHSRK-------MNLTRGIN---LRKVAEK--MNGCSGADVKGVCTEAGMYAL 370 (405)
T ss_dssp HHHHHHHTT-------SBCCSSCC---HHHHHHH--CCSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcC-------CCCCccCC---HHHHHHH--CCCCCHHHHHHHHHHHHHHHH
Confidence 999877653 22212222 5666664 245777899999988655544
No 44
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.76 E-value=6.4e-17 Score=218.08 Aligned_cols=458 Identities=16% Similarity=0.204 Sum_probs=251.3
Q ss_pred CCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccccccccccHHHHHHHHHHHHHh---------
Q 002012 289 TKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGTCYRGDFEKRLKAVLKEVTK--------- 359 (982)
Q Consensus 289 ~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~~~~g~~e~~l~~l~~~~~~--------- 359 (982)
.+.++||+||||||||++|+.+.... .+..++.+++++..+.. .+...+.....
T Consensus 1266 ~~~~vLL~GPpGtGKT~la~~~l~~~---------~~~~~~~infsa~ts~~--------~~~~~i~~~~~~~~~~~g~~ 1328 (2695)
T 4akg_A 1266 SKRGIILCGPPGSGKTMIMNNALRNS---------SLYDVVGINFSKDTTTE--------HILSALHRHTNYVTTSKGLT 1328 (2695)
T ss_dssp HTCEEEEECSTTSSHHHHHHHHHHSC---------SSCEEEEEECCTTCCHH--------HHHHHHHHHBCCEEETTTEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHhcC---------CCCceEEEEeecCCCHH--------HHHHHHHHHhhhccccCCcc
Confidence 34699999999999999996654432 26788888887766431 23333332210
Q ss_pred -----cCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCC--------------CeEEEEecCchhHhhhhhcChHH
Q 002012 360 -----SNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRG--------------ELRCIGATTLNEYRNYIEKDPAL 420 (982)
Q Consensus 360 -----~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g--------------~i~vI~at~~~~~~~~~~~d~al 420 (982)
.+.++||||||++.. .....|++.+.++|+++++.| ++.+|+|||++...+...++|+|
T Consensus 1329 ~~P~~~gk~~VlFiDEinmp--~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rl 1406 (2695)
T 4akg_A 1329 LLPKSDIKNLVLFCDEINLP--KLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERF 1406 (2695)
T ss_dssp EEEBSSSSCEEEEEETTTCS--CCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHH
T ss_pred ccCCCCCceEEEEecccccc--cccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhh
Confidence 123579999999973 333346677889999999854 37899999998534455799999
Q ss_pred HhccceEEecCCCHHHHHHHHHHHHHHHhhhc-C-CccChHHHHHHHHHhhhhhccCCCcchhhHHHHHHHHHhh----h
Q 002012 421 ERRFQQVFCDQPSVENTISILRGLRERYELHH-G-VKISDSALVSAAVLADRYITERFLPDKAIDLVDEAAAKLK----M 494 (982)
Q Consensus 421 ~rRf~~i~i~~Ps~~e~~~IL~~~~~~~~~~~-~-v~i~~~~l~~~~~~s~r~i~~~~~p~~a~~lld~a~~~~~----~ 494 (982)
.|||..+.++.|+.+++..|+..+...+-... . ..+.+..+... +++-........ .
T Consensus 1407 lRrf~vi~i~~P~~~~l~~I~~~il~~~l~~~~~v~~~~~~lv~at-----------------i~~y~~v~~~~~~~~k~ 1469 (2695)
T 4akg_A 1407 TRHAAILYLGYPSGKSLSQIYEIYYKAIFKLVPEFRSYTEPFARAS-----------------VHLYNECKARYSTGLQS 1469 (2695)
T ss_dssp HTTEEEEECCCCTTTHHHHHHHHHHHHHTTSSGGGGGGHHHHHHHH-----------------HHHHHHHHHHSCTTTCT
T ss_pred hheeeEEEeCCCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH-----------------HHHHHHHHHHcCCccCC
Confidence 99999999999999999999988877642210 0 01112222222 222222222211 1
Q ss_pred hccCCccchHHHHHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q 002012 495 EITSKPIELDEIDRAVLKLEMEKLSLKNDTDKASKERLSKLEHDLNSLKQKQKELNDQWSREKDLMSRIRSIKEEI-DRV 573 (982)
Q Consensus 495 ~~~~~~~~l~~~~~~~~~~~~e~~~l~~~~~~~~~~~l~~~~~e~~~l~~~~~~l~~~~~~e~~~~~~~~~~~~~~-~~~ 573 (982)
...+.+..+..+-+.+.....+ ... .....+.+.|.|||.++...+.+.++- .-.
T Consensus 1470 HY~FnlRDLsrv~qGll~~~~~--~~~----------------------~~~~~l~rLw~HE~~Rvf~DRLv~~~D~~~f 1525 (2695)
T 4akg_A 1470 HYLFSPRELTRLVRGVYTAINT--GPR----------------------QTLRSLIRLWAYEAWRIFADRLVGVKEKNSF 1525 (2695)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHT--SSC----------------------CCHHHHHHHHHHHHHHHHTTTCCSSHHHHHH
T ss_pred CcccCHHHHHHHHHHHHhcCch--hhh----------------------ccHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 1112233333222222111100 000 112457788999999987554332211 000
Q ss_pred HHHHHH-HHhhhcHHH-----HHHhhhcchHHHHHHHHHHHHhHHHHHhcCCccccccCCHhHHHHHHHHhhCCCCcccc
Q 002012 574 NLEMEA-AERDYDLNR-----AAELKYGTMISLQRQLEEAEKNLSEFQKSGHSLLREEVTDLDIAEIVSKWTGIPLSSLQ 647 (982)
Q Consensus 574 ~~~~~~-~~~~~~~~~-----~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~gi~~~~~~ 647 (982)
...+.+ ..+.+.... ...+-|+... ...-..++.+++.+.+..
T Consensus 1526 ~~~l~~~~~~~f~~~~~~~~~~~~~~f~df~---------------------~~~Y~~v~~~~l~~~l~~---------- 1574 (2695)
T 4akg_A 1526 EQLLYETVDKYLPNQDLGNISSTSLLFSGLL---------------------SLDFKEVNKTDLVNFIEE---------- 1574 (2695)
T ss_dssp HHHHHHHHHHHSCCSCCCCCSTTTCCEESSS---------------------SSSCEECCHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHhcccchhhhccCCceeeecC---------------------CCcceecCHHHHHHHHHH----------
Confidence 000100 000000000 0000000000 000011121222222111
Q ss_pred hhHHHHHHHHH-HhhhcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEE
Q 002012 648 QSEREKLVMLE-EVLHKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVR 726 (982)
Q Consensus 648 ~~~~~~l~~l~-~~l~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~ 726 (982)
.+.... ....-+++=.++|++.+.+..+.. +.|.+|+||+|++|+||+++++..|... +..+..
T Consensus 1575 -----~l~~yn~~~~~m~LVlF~dai~Hi~RI~Ril-------~~p~G~~LLvGvgGsGkqSltrLaa~i~---~~~~fq 1639 (2695)
T 4akg_A 1575 -----RFKTFCDEELEVPMVIHESMVDHILRIDRAL-------KQVQGHMMLIGASRTGKTILTRFVAWLN---GLKIVQ 1639 (2695)
T ss_dssp -----HHHHHHHHSCCCCCCCCHHHHHHHHHHHHHH-------HSSSEEEEEECTTTSCHHHHHHHHHHHT---TCEEEC
T ss_pred -----HHHHHHhhcCCceeeeHHHHHHHHHHHHHHH-------cCCCCCEEEECCCCCcHHHHHHHHHHHh---CCeeEE
Confidence 111111 112236777889999998877765 4677899999999999999999999775 555555
Q ss_pred EeccccccccccccccCCCCCccccccCCchhHHHh----hCCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEE
Q 002012 727 IDMSEYMEKHSVSRLVGAPPGYVGYEEGGQLTEVVR----RRPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTV 802 (982)
Q Consensus 727 i~~s~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~l~----~~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~ 802 (982)
+..+. +|...+-...|...++ +....|++|+|.+-..+.+++.+..+|.+|.+.+--.
T Consensus 1640 i~~~~---------------~Y~~~~f~eDLk~l~~~aG~~~~~~vFL~tD~qi~~e~FLE~IN~lL~sGEVP~LF~--- 1701 (2695)
T 4akg_A 1640 PKIHR---------------HSNLSDFDMILKKAISDCSLKESRTCLIIDESNILETAFLERMNTLLANADIPDLFQ--- 1701 (2695)
T ss_dssp CCCCT---------------TCCHHHHHHHHHHHHHHHHHSCCCEEEEEETTTCCSHHHHHHHHHHHHSSSCTTTSC---
T ss_pred EEeeC---------------CCCHHHHHHHHHHHHHHcCCCCCceEEEEeccccccHHHHHHHHHHHccCCCCCCCC---
Confidence 54432 1211111122444443 3456799999999999999999999999998764210
Q ss_pred ecccEEEEEecCCChHHHHHhhh----hc---ccchHHHHHHHHHHHHHHH-------------Hhh--cChHHHhcccc
Q 002012 803 SFTNCVVIMTSNIGSHYILETLQ----SV---QDSKEAVYEVMKKQVVELA-------------RQT--FRPEFLNRIDE 860 (982)
Q Consensus 803 ~~~~~iiI~tsn~~~~~i~~~~~----~~---~~~~~~~~~~~~~~~~~~~-------------~~~--f~p~ll~Rid~ 860 (982)
....+.+...+. .. .+.....+..+.+++.+.+ +.. --|.|+++| .
T Consensus 1702 -----------~dE~~~i~~~~r~~~~~~g~~~~t~~~l~~~Fi~rvr~NLHvVL~mSP~g~~fr~R~r~fPaLvn~c-t 1769 (2695)
T 4akg_A 1702 -----------GEEYDKLLNNLRNKTRSLGLLLDTEQELYDWFVGEIAKNLHVVFTICDPTNNKSSAMISSPALFNRC-I 1769 (2695)
T ss_dssp -----------THHHHHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHCEEEEEESCTTSHHHHHHHHSHHHHHHS-E
T ss_pred -----------HHHHHHHHHHhHHHHHhcCCCCCCHHHHHHHHHHHHHHcCEEEEEECCCChHHHHHHHhChHhhcce-e
Confidence 001111111110 00 0122333444444444322 111 237889988 4
Q ss_pred ccccCCCChhHHHHHHHHHHHH
Q 002012 861 YIVFQPLDSKEISKIVEIQMNR 882 (982)
Q Consensus 861 ii~F~pl~~~~l~~il~~~l~~ 882 (982)
+--|.+-+++.+..+...++..
T Consensus 1770 IdWf~~Wp~eAL~~Va~~fl~~ 1791 (2695)
T 4akg_A 1770 INWMGDWDTKTMSQVANNMVDV 1791 (2695)
T ss_dssp EEECCSCCHHHHHHHHHHHSCS
T ss_pred EeecCCCCHHHHHHHHHHHhhc
Confidence 7789999999988888777653
No 45
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.75 E-value=7.8e-19 Score=213.96 Aligned_cols=199 Identities=22% Similarity=0.347 Sum_probs=138.5
Q ss_pred CCCCCcccchHHHHHHHHHhc-------------cCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEe
Q 002012 266 GKLDPVIGRDDEIRRCIQILS-------------RRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLD 332 (982)
Q Consensus 266 ~~l~~liG~~~~i~~l~~~L~-------------~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~ 332 (982)
-+++++.|.++..+.+.+++. ...+.++||+||||||||++|+++|.++ +.+++.++
T Consensus 474 v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~----------~~~f~~v~ 543 (806)
T 3cf2_A 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISIK 543 (806)
T ss_dssp CCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT----------TCEEEECC
T ss_pred CCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHh----------CCceEEec
Confidence 356788888888777776542 1356789999999999999999999998 89999999
Q ss_pred cccccccccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCC------chhhHHHHHHhhhc----CCCeEEE
Q 002012 333 MASLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQS------GAMDASNMLKPMLG----RGELRCI 402 (982)
Q Consensus 333 ~~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~------~~~~~~~~L~~~le----~g~i~vI 402 (982)
.+++. .+|.|+.+..++.+|..++. ..|+||||||||.+.+.+... ....+.+.|+..|+ ..+|.||
T Consensus 544 ~~~l~--s~~vGese~~vr~lF~~Ar~-~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi 620 (806)
T 3cf2_A 544 GPELL--TMWFGESEANVREIFDKARQ-AAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFII 620 (806)
T ss_dssp HHHHH--TTTCSSCHHHHHHHHHHHHT-TCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEE
T ss_pred cchhh--ccccchHHHHHHHHHHHHHH-cCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEE
Confidence 99998 45999999999999999986 578999999999998765311 12345666766665 4679999
Q ss_pred EecCchhHhhhhhcChHHHh--ccc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCCcc
Q 002012 403 GATTLNEYRNYIEKDPALER--RFQ-QVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLPD 479 (982)
Q Consensus 403 ~at~~~~~~~~~~~d~al~r--Rf~-~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~p~ 479 (982)
+|||.++ .+||+++| ||+ .|+|+.|+.+++.+||+.+..+.... ++-.+..++..+. .+.+.
T Consensus 621 ~aTN~p~-----~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~-----~~~dl~~la~~t~-----g~SGa 685 (806)
T 3cf2_A 621 GATNRPD-----IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-----KDVDLEFLAKMTN-----GFSGA 685 (806)
T ss_dssp CC-CCSS-----SSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--C-----CC---------------------
T ss_pred EeCCCch-----hCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCC-----CCCCHHHHHHhCC-----CCCHH
Confidence 9999998 79999999 997 99999999999999998766442211 1223555666644 45678
Q ss_pred hhhHHHHHHHHHh
Q 002012 480 KAIDLVDEAAAKL 492 (982)
Q Consensus 480 ~a~~lld~a~~~~ 492 (982)
+...++.+|+..+
T Consensus 686 di~~l~~~A~~~a 698 (806)
T 3cf2_A 686 DLTEICQRACKLA 698 (806)
T ss_dssp CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888887553
No 46
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.75 E-value=3e-17 Score=181.92 Aligned_cols=209 Identities=20% Similarity=0.252 Sum_probs=160.0
Q ss_pred CcccchHHHHHHHHHhc---------------cCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecc
Q 002012 270 PVIGRDDEIRRCIQILS---------------RRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMA 334 (982)
Q Consensus 270 ~liG~~~~i~~l~~~L~---------------~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~ 334 (982)
+++|+++.++.+.+.+. .....++||+||||||||++|+++|+.+.... .....+++.++++
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~---~~~~~~~~~~~~~ 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLG---YVRKGHLVSVTRD 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTT---SSSSCCEEEECGG
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcC---CcCCCcEEEEcHH
Confidence 59999998888776543 34556799999999999999999999986532 1235588999988
Q ss_pred cccccccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCC-CchhhHHHHHHhhhcCC--CeEEEEecCchhHh
Q 002012 335 SLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQ-SGAMDASNMLKPMLGRG--ELRCIGATTLNEYR 411 (982)
Q Consensus 335 ~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~-~~~~~~~~~L~~~le~g--~i~vI~at~~~~~~ 411 (982)
.+.. .+.|.....+..+|..+. +.||||||+|.+.+.++. .....+.+.|+..++.+ ++.+|++|+...+.
T Consensus 109 ~l~~--~~~g~~~~~~~~~~~~~~----~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~ 182 (309)
T 3syl_A 109 DLVG--QYIGHTAPKTKEVLKRAM----GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRME 182 (309)
T ss_dssp GTCC--SSTTCHHHHHHHHHHHHT----TSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHH
T ss_pred Hhhh--hcccccHHHHHHHHHhcC----CCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHH
Confidence 8874 467888887877777652 349999999999754432 23467788899988744 78999999998877
Q ss_pred hhhhcChHHHhcc-ceEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccC--CCcchhhHHHHHH
Q 002012 412 NYIEKDPALERRF-QQVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITER--FLPDKAIDLVDEA 488 (982)
Q Consensus 412 ~~~~~d~al~rRf-~~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~--~~p~~a~~lld~a 488 (982)
.++.++|+|++|| ..+.|+.|+.+++..|++.++.. .++.++++++..++.++.+..... ...+.+..+++.+
T Consensus 183 ~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~----~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a 258 (309)
T 3syl_A 183 NFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDD----QNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRA 258 (309)
T ss_dssp HHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHH----TTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHH
T ss_pred HHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHH
Confidence 7778899999999 59999999999999999988877 578899999999988765322111 1235556666666
Q ss_pred HHH
Q 002012 489 AAK 491 (982)
Q Consensus 489 ~~~ 491 (982)
+..
T Consensus 259 ~~~ 261 (309)
T 3syl_A 259 RLR 261 (309)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
No 47
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.75 E-value=4.9e-17 Score=175.51 Aligned_cols=201 Identities=20% Similarity=0.292 Sum_probs=142.2
Q ss_pred CCCCCcccchHHHHHHHHHhcc------------CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEec
Q 002012 266 GKLDPVIGRDDEIRRCIQILSR------------RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDM 333 (982)
Q Consensus 266 ~~l~~liG~~~~i~~l~~~L~~------------~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~ 333 (982)
-.|++++|.++.++.+.+.+.. ..+.++||+||||||||++|+++|+.+ +.+++.+++
T Consensus 3 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~----------~~~~~~~~~ 72 (262)
T 2qz4_A 3 VSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA----------QVPFLAMAG 72 (262)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH----------TCCEEEEET
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCEEEech
Confidence 4688999999977776654321 345679999999999999999999998 789999999
Q ss_pred ccccccccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCC-------chhhHHHHHHhhhc----CCCeEEE
Q 002012 334 ASLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQS-------GAMDASNMLKPMLG----RGELRCI 402 (982)
Q Consensus 334 ~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~-------~~~~~~~~L~~~le----~g~i~vI 402 (982)
+.+.. .+.|.....+..+|..+.. ..++||||||+|.+...+... ......+.|+..++ ...+.+|
T Consensus 73 ~~~~~--~~~~~~~~~~~~~~~~a~~-~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi 149 (262)
T 2qz4_A 73 AEFVE--VIGGLGAARVRSLFKEARA-RAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVL 149 (262)
T ss_dssp TTTSS--SSTTHHHHHHHHHHHHHHH-TCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEE
T ss_pred HHHHh--hccChhHHHHHHHHHHHHh-cCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEE
Confidence 88873 4677888888899988876 457899999999997543211 11223333333333 3578999
Q ss_pred EecCchhHhhhhhcChHHHh--ccc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHH-HHHHHHHhhhhhccCCCc
Q 002012 403 GATTLNEYRNYIEKDPALER--RFQ-QVFCDQPSVENTISILRGLRERYELHHGVKISDSA-LVSAAVLADRYITERFLP 478 (982)
Q Consensus 403 ~at~~~~~~~~~~~d~al~r--Rf~-~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~-l~~~~~~s~r~i~~~~~p 478 (982)
++||..+ .+|+++.| ||. .++++.|+.+++.+|++.+...+ +...+.+. ...++..+.+ +.+
T Consensus 150 ~~tn~~~-----~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~----~~~~~~~~~~~~l~~~~~g-----~~~ 215 (262)
T 2qz4_A 150 ASTNRAD-----ILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSL----KLTQSSTFYSQRLAELTPG-----FSG 215 (262)
T ss_dssp EEESCGG-----GGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHT----TCCBTHHHHHHHHHHTCTT-----CCH
T ss_pred ecCCChh-----hcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhC----CCCcchhhHHHHHHHHCCC-----CCH
Confidence 9999887 68999999 996 88999999999999999888763 44455443 3555555433 345
Q ss_pred chhhHHHHHHHHHhh
Q 002012 479 DKAIDLVDEAAAKLK 493 (982)
Q Consensus 479 ~~a~~lld~a~~~~~ 493 (982)
++...+++.|+..+.
T Consensus 216 ~~l~~l~~~a~~~a~ 230 (262)
T 2qz4_A 216 ADIANICNEAALHAA 230 (262)
T ss_dssp HHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHH
Confidence 677788887775543
No 48
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.75 E-value=2.9e-17 Score=184.53 Aligned_cols=195 Identities=20% Similarity=0.253 Sum_probs=148.4
Q ss_pred hhhhhHHHhhcCCCCCcccchHHHHHHHHHhcc-----CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEE
Q 002012 255 YGNDLTELARSGKLDPVIGRDDEIRRCIQILSR-----RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLI 329 (982)
Q Consensus 255 ~~~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~-----~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~ 329 (982)
....|.++++|..|++++|+++.++.+...+.. ....++||+||||||||++|+++++.+ +.+++
T Consensus 15 ~~~~~~~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~----------~~~~~ 84 (338)
T 3pfi_A 15 FDETYETSLRPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEM----------SANIK 84 (338)
T ss_dssp --------CCCCSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHT----------TCCEE
T ss_pred hhhhhhhccCCCCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHh----------CCCeE
Confidence 345688899999999999999988888877653 455789999999999999999999987 77889
Q ss_pred EEecccccccccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCCC-----------
Q 002012 330 SLDMASLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRGE----------- 398 (982)
Q Consensus 330 ~l~~~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g~----------- 398 (982)
.+++..+.. .+ .+...+. ....+.+|||||||.+. .+.++.|+..++.+.
T Consensus 85 ~~~~~~~~~----~~----~~~~~~~---~~~~~~vl~lDEi~~l~--------~~~~~~Ll~~l~~~~~~~~~~~~~~~ 145 (338)
T 3pfi_A 85 TTAAPMIEK----SG----DLAAILT---NLSEGDILFIDEIHRLS--------PAIEEVLYPAMEDYRLDIIIGSGPAA 145 (338)
T ss_dssp EEEGGGCCS----HH----HHHHHHH---TCCTTCEEEEETGGGCC--------HHHHHHHHHHHHTSCC---------C
T ss_pred Eecchhccc----hh----HHHHHHH---hccCCCEEEEechhhcC--------HHHHHHHHHHHHhccchhhcccCccc
Confidence 988765531 12 2223332 23456799999999985 567778888887553
Q ss_pred ---------eEEEEecCchhHhhhhhcChHHHhcc-ceEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHh
Q 002012 399 ---------LRCIGATTLNEYRNYIEKDPALERRF-QQVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLA 468 (982)
Q Consensus 399 ---------i~vI~at~~~~~~~~~~~d~al~rRf-~~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s 468 (982)
+.+|++||... .++++|.+|| ..+.++.|+.+++..+++..... .++.++++++..++..+
T Consensus 146 ~~~~~~~~~~~~i~atn~~~-----~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~----~~~~~~~~~~~~l~~~~ 216 (338)
T 3pfi_A 146 QTIKIDLPKFTLIGATTRAG-----MLSNPLRDRFGMQFRLEFYKDSELALILQKAALK----LNKTCEEKAALEIAKRS 216 (338)
T ss_dssp CCCCCCCCCCEEEEEESCGG-----GSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHH----TTCEECHHHHHHHHHTT
T ss_pred cceecCCCCeEEEEeCCCcc-----ccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHHH
Confidence 78999999977 5899999999 58999999999999999877776 56789999999988866
Q ss_pred hhhhccCCCcchhhHHHHHHHHHhh
Q 002012 469 DRYITERFLPDKAIDLVDEAAAKLK 493 (982)
Q Consensus 469 ~r~i~~~~~p~~a~~lld~a~~~~~ 493 (982)
.++ +..+..+++.+...+.
T Consensus 217 ~G~------~r~l~~~l~~~~~~a~ 235 (338)
T 3pfi_A 217 RST------PRIALRLLKRVRDFAD 235 (338)
T ss_dssp TTC------HHHHHHHHHHHHHHHH
T ss_pred CcC------HHHHHHHHHHHHHHHH
Confidence 543 4777777777765544
No 49
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.74 E-value=8.9e-18 Score=185.53 Aligned_cols=201 Identities=21% Similarity=0.342 Sum_probs=149.9
Q ss_pred hcCCCCCcccchHHHHHHHHHhcc-------------CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEE
Q 002012 264 RSGKLDPVIGRDDEIRRCIQILSR-------------RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLIS 330 (982)
Q Consensus 264 ~~~~l~~liG~~~~i~~l~~~L~~-------------~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~ 330 (982)
++-++++++|.++.++.+.+.+.. ....+++|+||||||||++|+++|..+ +.+++.
T Consensus 10 ~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~----------~~~~i~ 79 (301)
T 3cf0_A 10 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFIS 79 (301)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT----------TCEEEE
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh----------CCCEEE
Confidence 345788999999988887776542 456689999999999999999999988 789999
Q ss_pred EecccccccccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCC------CchhhHHHHHHhhhc----CCCeE
Q 002012 331 LDMASLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQ------SGAMDASNMLKPMLG----RGELR 400 (982)
Q Consensus 331 l~~~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~------~~~~~~~~~L~~~le----~g~i~ 400 (982)
++++++.. .+.|+.+..+..+|..+.. ..++||||||+|.+....+. .....+.+.|+..++ ..++.
T Consensus 80 v~~~~l~~--~~~g~~~~~~~~~f~~a~~-~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~ 156 (301)
T 3cf0_A 80 IKGPELLT--MWFGESEANVREIFDKARQ-AAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVF 156 (301)
T ss_dssp ECHHHHHH--HHHTTCTTHHHHHHHHHHH-TCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEE
T ss_pred EEhHHHHh--hhcCchHHHHHHHHHHHHh-cCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEE
Confidence 99888763 3567777778889988876 56789999999999765321 112334555666554 45899
Q ss_pred EEEecCchhHhhhhhcChHHHh--ccc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCC
Q 002012 401 CIGATTLNEYRNYIEKDPALER--RFQ-QVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFL 477 (982)
Q Consensus 401 vI~at~~~~~~~~~~~d~al~r--Rf~-~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~ 477 (982)
+|++||.++ .+|+++.| ||. .++++.|+.+++.+||+.+..+.. .. .+..+..++..+.+ +.
T Consensus 157 vi~atn~~~-----~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~----~~-~~~~~~~la~~~~g-----~s 221 (301)
T 3cf0_A 157 IIGATNRPD-----IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSP----VA-KDVDLEFLAKMTNG-----FS 221 (301)
T ss_dssp EEEEESCGG-----GSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC----BC-SSCCHHHHHHTCSS-----CC
T ss_pred EEEecCCcc-----ccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCC----CC-ccchHHHHHHHcCC-----CC
Confidence 999999988 78999999 996 899999999999999987776532 11 12223455555443 44
Q ss_pred cchhhHHHHHHHHHh
Q 002012 478 PDKAIDLVDEAAAKL 492 (982)
Q Consensus 478 p~~a~~lld~a~~~~ 492 (982)
+.+...+++.|+..+
T Consensus 222 g~dl~~l~~~a~~~a 236 (301)
T 3cf0_A 222 GADLTEICQRACKLA 236 (301)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 567777887777543
No 50
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.74 E-value=1.2e-17 Score=187.90 Aligned_cols=199 Identities=23% Similarity=0.324 Sum_probs=146.2
Q ss_pred hhcccccchHHHHHHHHHHHHHh--------cCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEecccc
Q 002012 661 LHKRVIGQDIAVKSVADAIRRSR--------AGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEY 732 (982)
Q Consensus 661 l~~~iiGq~~a~~~l~~~i~~~~--------~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~ 732 (982)
-|.+|.|.+++++.|.+.+.... .|.. |...+||+||||||||++|+++|..+ +.+|+.++++++
T Consensus 180 ~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~----~prGvLLyGPPGTGKTlLAkAiA~e~---~~~fi~v~~s~l 252 (437)
T 4b4t_I 180 SYSDIGGLESQIQEIKESVELPLTHPELYEEMGIK----PPKGVILYGAPGTGKTLLAKAVANQT---SATFLRIVGSEL 252 (437)
T ss_dssp CGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCC----CCSEEEEESSTTTTHHHHHHHHHHHH---TCEEEEEESGGG
T ss_pred cceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC----CCCCCceECCCCchHHHHHHHHHHHh---CCCEEEEEHHHh
Confidence 46899999999999999986521 2332 22359999999999999999999998 889999999987
Q ss_pred ccccccccccCCCCCccccccC--CchhHHHhhCCCeEEEEccccccCH--------------HHHHHHHHhhhcCceec
Q 002012 733 MEKHSVSRLVGAPPGYVGYEEG--GQLTEVVRRRPYSVVLFDEIEKAHQ--------------DVFNILLQLLDDGRITD 796 (982)
Q Consensus 733 ~~~~~~~~l~g~~~g~vg~~~~--~~l~~~l~~~~~~Vl~lDEidkl~~--------------~~~~~Ll~~le~g~~~d 796 (982)
... |+|..+. +.++...+...++||||||+|.+.+ ..++.||..|+.-.
T Consensus 253 ~sk------------~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~--- 317 (437)
T 4b4t_I 253 IQK------------YLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFD--- 317 (437)
T ss_dssp CCS------------SSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCC---
T ss_pred hhc------------cCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcC---
Confidence 533 4554332 3567777788889999999998732 24556666665311
Q ss_pred CCCcEEecccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHh--ccccccccCCCChhHHHH
Q 002012 797 SQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLN--RIDEYIVFQPLDSKEISK 874 (982)
Q Consensus 797 ~~g~~~~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~--Rid~ii~F~pl~~~~l~~ 874 (982)
...+++||+|||.... ++|+|+. |||..|.|++++.++..+
T Consensus 318 ------~~~~ViVIaATNrpd~-------------------------------LDpALlRpGRfD~~I~v~lPd~~~R~~ 360 (437)
T 4b4t_I 318 ------DRGDVKVIMATNKIET-------------------------------LDPALIRPGRIDRKILFENPDLSTKKK 360 (437)
T ss_dssp ------CSSSEEEEEEESCSTT-------------------------------CCTTSSCTTTEEEEECCCCCCHHHHHH
T ss_pred ------CCCCEEEEEeCCChhh-------------------------------cCHHHhcCCceeEEEEcCCcCHHHHHH
Confidence 1246899999997653 7888885 999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHH
Q 002012 875 IVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEI 930 (982)
Q Consensus 875 il~~~l~~~~~~~~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~l~~~l 930 (982)
|++.++++ ....-.++ ++.|+.. ...|.+++|++++......++
T Consensus 361 Il~~~l~~-------~~l~~dvd---l~~LA~~--T~GfSGADI~~l~~eA~~~Ai 404 (437)
T 4b4t_I 361 ILGIHTSK-------MNLSEDVN---LETLVTT--KDDLSGADIQAMCTEAGLLAL 404 (437)
T ss_dssp HHHHHHTT-------SCBCSCCC---HHHHHHH--CCSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-------CCCCCcCC---HHHHHHh--CCCCCHHHHHHHHHHHHHHHH
Confidence 99877654 22111222 4666664 245777899999988655544
No 51
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.74 E-value=2.7e-17 Score=192.36 Aligned_cols=204 Identities=23% Similarity=0.331 Sum_probs=159.6
Q ss_pred HhhcCCCCCcccchHHHHHHHHHhcc-------------CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeE
Q 002012 262 LARSGKLDPVIGRDDEIRRCIQILSR-------------RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKL 328 (982)
Q Consensus 262 ~~~~~~l~~liG~~~~i~~l~~~L~~-------------~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v 328 (982)
..++..+++++|.++.++.+.+.+.. ....++||+||||||||++|++++..+ +.++
T Consensus 197 ~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~----------~~~f 266 (489)
T 3hu3_A 197 SLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET----------GAFF 266 (489)
T ss_dssp HHTCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC----------SSEE
T ss_pred ccCCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh----------CCCE
Confidence 34556788999999999888876642 456789999999999999999999987 8899
Q ss_pred EEEecccccccccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCC-c--hhhHHHHHHhhhc----CCCeEE
Q 002012 329 ISLDMASLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQS-G--AMDASNMLKPMLG----RGELRC 401 (982)
Q Consensus 329 ~~l~~~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~-~--~~~~~~~L~~~le----~g~i~v 401 (982)
+.++++++.+ .+.|+.+..++.+|..+.. +.++||||||||.+.+.++.. + ...+++.|+..++ ..++++
T Consensus 267 v~vn~~~l~~--~~~g~~~~~~~~~f~~A~~-~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~v 343 (489)
T 3hu3_A 267 FLINGPEIMS--KLAGESESNLRKAFEEAEK-NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (489)
T ss_dssp EEEEHHHHHT--SCTTHHHHHHHHHHHHHHH-TCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEE
T ss_pred EEEEchHhhh--hhcchhHHHHHHHHHHHHh-cCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEE
Confidence 9999999884 4789999999999998876 567899999999998765432 2 2356667777775 568999
Q ss_pred EEecCchhHhhhhhcChHHHh--ccc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCCc
Q 002012 402 IGATTLNEYRNYIEKDPALER--RFQ-QVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLP 478 (982)
Q Consensus 402 I~at~~~~~~~~~~~d~al~r--Rf~-~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~p 478 (982)
|+|||.++ .+++++.+ ||. .+++..|+.+++.+||+.+...+ ... .+..+..++..+. ++.+
T Consensus 344 IaaTn~~~-----~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~----~l~-~~~~l~~la~~t~-----g~s~ 408 (489)
T 3hu3_A 344 MAATNRPN-----SIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNM----KLA-DDVDLEQVANETH-----GHVG 408 (489)
T ss_dssp EEEESCGG-----GBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTS----CBC-TTCCHHHHHHTCT-----TCCH
T ss_pred EEecCCcc-----ccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcC----CCc-chhhHHHHHHHcc-----CCcH
Confidence 99999997 78999999 886 79999999999999998766542 211 1223455555543 4556
Q ss_pred chhhHHHHHHHHHhh
Q 002012 479 DKAIDLVDEAAAKLK 493 (982)
Q Consensus 479 ~~a~~lld~a~~~~~ 493 (982)
.+...|+++|...+.
T Consensus 409 ~dL~~L~~~A~~~a~ 423 (489)
T 3hu3_A 409 ADLAALCSEAALQAI 423 (489)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 778888888776554
No 52
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.73 E-value=3.5e-17 Score=182.72 Aligned_cols=197 Identities=18% Similarity=0.226 Sum_probs=155.3
Q ss_pred hhhhHHHhhcCCCCCcccchHHHHHHHHHhccCCCCCcE-EeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecc
Q 002012 256 GNDLTELARSGKLDPVIGRDDEIRRCIQILSRRTKNNPV-IIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMA 334 (982)
Q Consensus 256 ~~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~iL-L~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~ 334 (982)
..+|.++++|.+|++++|+++.++.+.+.+.....++++ ++||||||||++|+++++.+ +..++.++++
T Consensus 13 ~~~~~~k~rP~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l----------~~~~~~i~~~ 82 (324)
T 3u61_B 13 EHILEQKYRPSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV----------NADMMFVNGS 82 (324)
T ss_dssp CSSHHHHSCCCSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT----------TEEEEEEETT
T ss_pred cchHHHhhCCCCHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh----------CCCEEEEccc
Confidence 356999999999999999999999999998877666665 55779999999999999998 7889999865
Q ss_pred cccccccccccHHHHHHHHHHHHHhc----CCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcC--CCeEEEEecCch
Q 002012 335 SLVAGTCYRGDFEKRLKAVLKEVTKS----NGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGR--GELRCIGATTLN 408 (982)
Q Consensus 335 ~l~~~~~~~g~~e~~l~~l~~~~~~~----~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~--g~i~vI~at~~~ 408 (982)
... ...++..+...... +.+.||||||+|.+.+ .+.++.|+.+++. ..+.+|++||..
T Consensus 83 ~~~---------~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~-------~~~~~~L~~~le~~~~~~~iI~~~n~~ 146 (324)
T 3u61_B 83 DCK---------IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL-------AESQRHLRSFMEAYSSNCSIIITANNI 146 (324)
T ss_dssp TCC---------HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG-------HHHHHHHHHHHHHHGGGCEEEEEESSG
T ss_pred ccC---------HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc-------HHHHHHHHHHHHhCCCCcEEEEEeCCc
Confidence 421 23444444443332 2567999999999851 3466788888874 678999999987
Q ss_pred hHhhhhhcChHHHhccceEEecCCCHHHHHHHHHHHHHHHh---hhcCCccCh-HHHHHHHHHhhhhhccCCCcchhhHH
Q 002012 409 EYRNYIEKDPALERRFQQVFCDQPSVENTISILRGLRERYE---LHHGVKISD-SALVSAAVLADRYITERFLPDKAIDL 484 (982)
Q Consensus 409 ~~~~~~~~d~al~rRf~~i~i~~Ps~~e~~~IL~~~~~~~~---~~~~v~i~~-~~l~~~~~~s~r~i~~~~~p~~a~~l 484 (982)
. .+++++.+||..+.|..|+.+++..|++.+...+. ...++.+++ +++..++..+.+.+ +.+++.
T Consensus 147 ~-----~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~------R~a~~~ 215 (324)
T 3u61_B 147 D-----GIIKPLQSRCRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDF------RKTIGE 215 (324)
T ss_dssp G-----GSCTTHHHHSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCT------THHHHH
T ss_pred c-----ccCHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCH------HHHHHH
Confidence 7 68999999999999999999998887766554433 356889998 99999999877544 668888
Q ss_pred HHHHH
Q 002012 485 VDEAA 489 (982)
Q Consensus 485 ld~a~ 489 (982)
++.++
T Consensus 216 L~~~~ 220 (324)
T 3u61_B 216 LDSYS 220 (324)
T ss_dssp HHHHG
T ss_pred HHHHh
Confidence 87776
No 53
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.73 E-value=1.5e-17 Score=189.82 Aligned_cols=199 Identities=20% Similarity=0.282 Sum_probs=146.0
Q ss_pred hhcccccchHHHHHHHHHHHHH--------hcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEecccc
Q 002012 661 LHKRVIGQDIAVKSVADAIRRS--------RAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEY 732 (982)
Q Consensus 661 l~~~iiGq~~a~~~l~~~i~~~--------~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~ 732 (982)
-|.+|.|.+++++.|.+.+... ..|.. |+..+||+||||||||++|+++|..+ +.+|+.++++++
T Consensus 179 t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~----~prGvLLyGPPGTGKTllAkAiA~e~---~~~f~~v~~s~l 251 (434)
T 4b4t_M 179 TYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIR----APKGALMYGPPGTGKTLLARACAAQT---NATFLKLAAPQL 251 (434)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCC----CCCEEEEESCTTSSHHHHHHHHHHHH---TCEEEEEEGGGG
T ss_pred ChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC----CCCeeEEECcCCCCHHHHHHHHHHHh---CCCEEEEehhhh
Confidence 4789999999999999887542 22333 22359999999999999999999998 889999999987
Q ss_pred ccccccccccCCCCCccccccC--CchhHHHhhCCCeEEEEccccccC-----------HH---HHHHHHHhhhcCceec
Q 002012 733 MEKHSVSRLVGAPPGYVGYEEG--GQLTEVVRRRPYSVVLFDEIEKAH-----------QD---VFNILLQLLDDGRITD 796 (982)
Q Consensus 733 ~~~~~~~~l~g~~~g~vg~~~~--~~l~~~l~~~~~~Vl~lDEidkl~-----------~~---~~~~Ll~~le~g~~~d 796 (982)
... |+|..+. +.++...+...++||||||+|.+. .. ..+.||..|+.-.
T Consensus 252 ~~~------------~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~--- 316 (434)
T 4b4t_M 252 VQM------------YIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFS--- 316 (434)
T ss_dssp CSS------------CSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSC---
T ss_pred hhc------------ccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccC---
Confidence 533 4554332 346667777788999999999762 12 4556777776311
Q ss_pred CCCcEEecccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHh--ccccccccCCCChhHHHH
Q 002012 797 SQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLN--RIDEYIVFQPLDSKEISK 874 (982)
Q Consensus 797 ~~g~~~~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~--Rid~ii~F~pl~~~~l~~ 874 (982)
...+++||+|||.... ++|+|+. |||..|.|++++.++..+
T Consensus 317 ------~~~~ViVIaaTNrp~~-------------------------------LD~AllRpGRfD~~I~i~lPd~~~R~~ 359 (434)
T 4b4t_M 317 ------SDDRVKVLAATNRVDV-------------------------------LDPALLRSGRLDRKIEFPLPSEDSRAQ 359 (434)
T ss_dssp ------SSCSSEEEEECSSCCC-------------------------------CCTTTCSTTSEEEEEECCCCCHHHHHH
T ss_pred ------CCCCEEEEEeCCCchh-------------------------------cCHhHhcCCceeEEEEeCCcCHHHHHH
Confidence 1135899999997653 7888876 999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHH
Q 002012 875 IVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEI 930 (982)
Q Consensus 875 il~~~l~~~~~~~~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~l~~~l 930 (982)
|++.++++ ....-.++ ++.|+.. ...|.+++|+.++......++
T Consensus 360 Il~~~~~~-------~~~~~dvd---l~~lA~~--t~G~sGADi~~l~~eA~~~a~ 403 (434)
T 4b4t_M 360 ILQIHSRK-------MTTDDDIN---WQELARS--TDEFNGAQLKAVTVEAGMIAL 403 (434)
T ss_dssp HHHHHHHH-------SCBCSCCC---HHHHHHH--CSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-------CCCCCcCC---HHHHHHh--CCCCCHHHHHHHHHHHHHHHH
Confidence 99888765 22112232 4566664 245677899999988665554
No 54
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.72 E-value=3.2e-17 Score=186.18 Aligned_cols=199 Identities=24% Similarity=0.339 Sum_probs=146.0
Q ss_pred hhcccccchHHHHHHHHHHHHH--------hcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEecccc
Q 002012 661 LHKRVIGQDIAVKSVADAIRRS--------RAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEY 732 (982)
Q Consensus 661 l~~~iiGq~~a~~~l~~~i~~~--------~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~ 732 (982)
-|.+|.|.+++++.|.+.+... ..|+. |...+||+||||||||++|+++|..+ +.+|+.++++++
T Consensus 207 t~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~----pprGILLyGPPGTGKTlLAkAiA~e~---~~~fi~vs~s~L 279 (467)
T 4b4t_H 207 TYSDVGGCKDQIEKLREVVELPLLSPERFATLGID----PPKGILLYGPPGTGKTLCARAVANRT---DATFIRVIGSEL 279 (467)
T ss_dssp CCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCC----CCSEEEECSCTTSSHHHHHHHHHHHH---TCEEEEEEGGGG
T ss_pred CHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCC----CCCceEeeCCCCCcHHHHHHHHHhcc---CCCeEEEEhHHh
Confidence 4678999999999999887541 22433 22359999999999999999999998 889999999987
Q ss_pred ccccccccccCCCCCccccccC--CchhHHHhhCCCeEEEEccccccCH--------------HHHHHHHHhhhcCceec
Q 002012 733 MEKHSVSRLVGAPPGYVGYEEG--GQLTEVVRRRPYSVVLFDEIEKAHQ--------------DVFNILLQLLDDGRITD 796 (982)
Q Consensus 733 ~~~~~~~~l~g~~~g~vg~~~~--~~l~~~l~~~~~~Vl~lDEidkl~~--------------~~~~~Ll~~le~g~~~d 796 (982)
... |+|..+. +.++...+...++||||||+|.+.. ..++.||..|+...
T Consensus 280 ~sk------------~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~--- 344 (467)
T 4b4t_H 280 VQK------------YVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFD--- 344 (467)
T ss_dssp CCC------------SSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSC---
T ss_pred hcc------------cCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccC---
Confidence 532 4554332 3567777788889999999998732 24556666666311
Q ss_pred CCCcEEecccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHh--ccccccccCCCChhHHHH
Q 002012 797 SQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLN--RIDEYIVFQPLDSKEISK 874 (982)
Q Consensus 797 ~~g~~~~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~--Rid~ii~F~pl~~~~l~~ 874 (982)
...++++|+|||.... ++|+|+. |||..|.|++++.++..+
T Consensus 345 ------~~~~ViVIaATNrpd~-------------------------------LDpALlRpGRFD~~I~i~lPd~~~R~~ 387 (467)
T 4b4t_H 345 ------PRGNIKVMFATNRPNT-------------------------------LDPALLRPGRIDRKVEFSLPDLEGRAN 387 (467)
T ss_dssp ------CTTTEEEEEECSCTTS-------------------------------BCHHHHSTTTCCEEECCCCCCHHHHHH
T ss_pred ------CCCcEEEEeCCCCccc-------------------------------CChhhhccccccEEEEeCCcCHHHHHH
Confidence 1246899999997643 7889986 999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHH
Q 002012 875 IVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEI 930 (982)
Q Consensus 875 il~~~l~~~~~~~~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~l~~~l 930 (982)
|++.+++. ....-.++ ++.|+.. ...|.+++|+.++......++
T Consensus 388 Ilk~~l~~-------~~l~~dvd---l~~LA~~--T~GfSGADI~~l~~eAa~~Ai 431 (467)
T 4b4t_H 388 IFRIHSKS-------MSVERGIR---WELISRL--CPNSTGAELRSVCTEAGMFAI 431 (467)
T ss_dssp HHHHHHTT-------SCBCSSCC---HHHHHHH--CCSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-------CCCCCCCC---HHHHHHH--CCCCCHHHHHHHHHHHHHHHH
Confidence 99877654 22222233 4556664 245677899999988655544
No 55
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.72 E-value=1.3e-16 Score=179.08 Aligned_cols=196 Identities=14% Similarity=0.227 Sum_probs=150.2
Q ss_pred hcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccccccc
Q 002012 662 HKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRL 741 (982)
Q Consensus 662 ~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l 741 (982)
+..++|++.+++.+...+...... ..+..++||+||||||||++|+++++.+ +.+++.++|+.+...
T Consensus 28 ~~~iiG~~~~~~~l~~~l~~~~~~----~~~~~~vll~G~~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~------ 94 (338)
T 3pfi_A 28 FDGYIGQESIKKNLNVFIAAAKKR----NECLDHILFSGPAGLGKTTLANIISYEM---SANIKTTAAPMIEKS------ 94 (338)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHT----TSCCCCEEEECSTTSSHHHHHHHHHHHT---TCCEEEEEGGGCCSH------
T ss_pred HHHhCChHHHHHHHHHHHHHHHhc----CCCCCeEEEECcCCCCHHHHHHHHHHHh---CCCeEEecchhccch------
Confidence 467999999999999998876432 2233459999999999999999999987 678999998765211
Q ss_pred cCCCCCccccccCCchhHHHhh-CCCeEEEEccccccCHHHHHHHHHhhhcCceecCC-------CcEEecccEEEEEec
Q 002012 742 VGAPPGYVGYEEGGQLTEVVRR-RPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQ-------GRTVSFTNCVVIMTS 813 (982)
Q Consensus 742 ~g~~~g~vg~~~~~~l~~~l~~-~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~-------g~~~~~~~~iiI~ts 813 (982)
+.+...+.. +.++|||||||+.+++..++.|++.|+++.+.... ...++..++++|++|
T Consensus 95 -------------~~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~at 161 (338)
T 3pfi_A 95 -------------GDLAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGAT 161 (338)
T ss_dssp -------------HHHHHHHHTCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEE
T ss_pred -------------hHHHHHHHhccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeC
Confidence 123344433 56789999999999999999999999987654211 122334468999999
Q ss_pred CCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHHHHHHHHHhCCCC
Q 002012 814 NIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKID 893 (982)
Q Consensus 814 n~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~~~~~~~~~~~ 893 (982)
|... .+.++|++||+.++.|+|++.+++..++...+.. .+
T Consensus 162 n~~~-------------------------------~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~-------~~-- 201 (338)
T 3pfi_A 162 TRAG-------------------------------MLSNPLRDRFGMQFRLEFYKDSELALILQKAALK-------LN-- 201 (338)
T ss_dssp SCGG-------------------------------GSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHH-------TT--
T ss_pred CCcc-------------------------------ccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHh-------cC--
Confidence 9632 2788999999889999999999999998877654 23
Q ss_pred ccCCHHHHHHHHhcCCCCCCCchHHHHHHHHHH
Q 002012 894 LHYTKEAVTLLGILGFDPNFGARPVKRVIQQLV 926 (982)
Q Consensus 894 l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~l 926 (982)
+.+++++++.|+. .|.++ .|.+.+.++..+
T Consensus 202 ~~~~~~~~~~l~~-~~~G~--~r~l~~~l~~~~ 231 (338)
T 3pfi_A 202 KTCEEKAALEIAK-RSRST--PRIALRLLKRVR 231 (338)
T ss_dssp CEECHHHHHHHHH-TTTTC--HHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH-HHCcC--HHHHHHHHHHHH
Confidence 6789999999998 46654 488888887743
No 56
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.72 E-value=7.8e-17 Score=173.76 Aligned_cols=205 Identities=23% Similarity=0.318 Sum_probs=149.4
Q ss_pred HHhhcCCCCCcccchHHHHHHHHHhc---c---------CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeE
Q 002012 261 ELARSGKLDPVIGRDDEIRRCIQILS---R---------RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKL 328 (982)
Q Consensus 261 ~~~~~~~l~~liG~~~~i~~l~~~L~---~---------~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v 328 (982)
+..++..|++++|.++.++.+.+++. . ..+.+++|+||||||||++|++++..+ +.++
T Consensus 4 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~----------~~~~ 73 (257)
T 1lv7_A 4 EDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA----------KVPF 73 (257)
T ss_dssp ECSSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH----------TCCE
T ss_pred ccCCCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc----------CCCE
Confidence 34456788999999987766655432 1 235679999999999999999999988 6788
Q ss_pred EEEecccccccccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCC---ch---hhHHHHHHhhhc----CCC
Q 002012 329 ISLDMASLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQS---GA---MDASNMLKPMLG----RGE 398 (982)
Q Consensus 329 ~~l~~~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~---~~---~~~~~~L~~~le----~g~ 398 (982)
+.++++++.. .+.|.....+..+|..+.. ..++++||||+|.+....+.. +. ....+.++..++ ...
T Consensus 74 ~~i~~~~~~~--~~~~~~~~~~~~~~~~a~~-~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 150 (257)
T 1lv7_A 74 FTISGSDFVE--MFVGVGASRVRDMFEQAKK-AAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEG 150 (257)
T ss_dssp EEECSCSSTT--SCCCCCHHHHHHHHHHHHT-TCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSC
T ss_pred EEEeHHHHHH--HhhhhhHHHHHHHHHHHHH-cCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCC
Confidence 9999888764 3667778888889988765 457899999999997654321 11 123344444443 567
Q ss_pred eEEEEecCchhHhhhhhcChHHHh--ccc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHH-HHHHHHHhhhhhcc
Q 002012 399 LRCIGATTLNEYRNYIEKDPALER--RFQ-QVFCDQPSVENTISILRGLRERYELHHGVKISDSA-LVSAAVLADRYITE 474 (982)
Q Consensus 399 i~vI~at~~~~~~~~~~~d~al~r--Rf~-~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~-l~~~~~~s~r~i~~ 474 (982)
+.+|++||.++ .+++++.| ||. .+.++.|+.+++.+|++.+..++ .+++++ +..++..+ .
T Consensus 151 ~~vI~~tn~~~-----~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~------~l~~~~~~~~la~~~-----~ 214 (257)
T 1lv7_A 151 IIVIAATNRPD-----VLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRV------PLAPDIDAAIIARGT-----P 214 (257)
T ss_dssp EEEEEEESCTT-----TSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTS------CBCTTCCHHHHHHTC-----T
T ss_pred EEEEEeeCCch-----hCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcC------CCCccccHHHHHHHc-----C
Confidence 89999999987 78999998 996 88999999999999998766542 233322 33444432 3
Q ss_pred CCCcchhhHHHHHHHHHhhh
Q 002012 475 RFLPDKAIDLVDEAAAKLKM 494 (982)
Q Consensus 475 ~~~p~~a~~lld~a~~~~~~ 494 (982)
++.+++...++..|...+..
T Consensus 215 G~~~~dl~~l~~~a~~~a~~ 234 (257)
T 1lv7_A 215 GFSGADLANLVNEAALFAAR 234 (257)
T ss_dssp TCCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 44678888888888776543
No 57
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.72 E-value=3.8e-17 Score=186.54 Aligned_cols=199 Identities=18% Similarity=0.284 Sum_probs=146.6
Q ss_pred hhcccccchHHHHHHHHHHHHHh--------cCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEecccc
Q 002012 661 LHKRVIGQDIAVKSVADAIRRSR--------AGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEY 732 (982)
Q Consensus 661 l~~~iiGq~~a~~~l~~~i~~~~--------~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~ 732 (982)
-|.+|.|.+++++.|.+++.... .|.. |+..+||+||||||||++|+++|..+ +.+|+.++++++
T Consensus 179 ~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~----~prGvLL~GPPGtGKTllAkAiA~e~---~~~~~~v~~s~l 251 (437)
T 4b4t_L 179 TFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIK----PPKGVLLYGPPGTGKTLLAKAVAATI---GANFIFSPASGI 251 (437)
T ss_dssp CSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCC----CCCEEEEESCTTSSHHHHHHHHHHHH---TCEEEEEEGGGT
T ss_pred ChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCC----CCCeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEehhhh
Confidence 36899999999999999886421 2332 23359999999999999999999998 889999999987
Q ss_pred ccccccccccCCCCCccccccC--CchhHHHhhCCCeEEEEccccccCH--------------HHHHHHHHhhhcCceec
Q 002012 733 MEKHSVSRLVGAPPGYVGYEEG--GQLTEVVRRRPYSVVLFDEIEKAHQ--------------DVFNILLQLLDDGRITD 796 (982)
Q Consensus 733 ~~~~~~~~l~g~~~g~vg~~~~--~~l~~~l~~~~~~Vl~lDEidkl~~--------------~~~~~Ll~~le~g~~~d 796 (982)
... |+|..+. +.++...+...++||||||+|.+.+ .+++.||..|+.-.
T Consensus 252 ~sk------------~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~--- 316 (437)
T 4b4t_L 252 VDK------------YIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFD--- 316 (437)
T ss_dssp CCS------------SSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSS---
T ss_pred ccc------------cchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhccc---
Confidence 533 4443322 3467777788899999999998732 25667777777411
Q ss_pred CCCcEEecccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHH--hccccccccCCCChhHHHH
Q 002012 797 SQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFL--NRIDEYIVFQPLDSKEISK 874 (982)
Q Consensus 797 ~~g~~~~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll--~Rid~ii~F~pl~~~~l~~ 874 (982)
...+++||+|||.... ++|+|+ +|||..|.|++++.++..+
T Consensus 317 ------~~~~vivI~ATNrp~~-------------------------------LDpAllRpGRfD~~I~i~lPd~~~R~~ 359 (437)
T 4b4t_L 317 ------NLGQTKIIMATNRPDT-------------------------------LDPALLRPGRLDRKVEIPLPNEAGRLE 359 (437)
T ss_dssp ------CTTSSEEEEEESSTTS-------------------------------SCTTTTSTTSEEEEECCCCCCHHHHHH
T ss_pred ------CCCCeEEEEecCCchh-------------------------------hCHHHhCCCccceeeecCCcCHHHHHH
Confidence 1246899999997643 788887 4699999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHH
Q 002012 875 IVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEI 930 (982)
Q Consensus 875 il~~~l~~~~~~~~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~l~~~l 930 (982)
|++.++.. ....-.++ ++.|+.. ...|.+++|++++......++
T Consensus 360 Il~~~~~~-------~~~~~d~d---l~~lA~~--t~G~sGADi~~l~~eA~~~ai 403 (437)
T 4b4t_L 360 IFKIHTAK-------VKKTGEFD---FEAAVKM--SDGFNGADIRNCATEAGFFAI 403 (437)
T ss_dssp HHHHHHHT-------SCBCSCCC---HHHHHHT--CCSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-------CCCCcccC---HHHHHHh--CCCCCHHHHHHHHHHHHHHHH
Confidence 99887764 22112232 4566664 345777899999987655443
No 58
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.72 E-value=2.8e-16 Score=164.30 Aligned_cols=199 Identities=24% Similarity=0.289 Sum_probs=151.4
Q ss_pred hhhHHHhhcCCCCCcccchHHHHHHHHHhccCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccc
Q 002012 257 NDLTELARSGKLDPVIGRDDEIRRCIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASL 336 (982)
Q Consensus 257 ~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l 336 (982)
.+|.++++|..+++++|+++.++.+.+.+......+++|+||||||||++++.+++.+.... ....++.++++..
T Consensus 5 ~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~-----~~~~~~~~~~~~~ 79 (226)
T 2chg_A 5 EIWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGEN-----WRDNFIEMNASDE 79 (226)
T ss_dssp CCHHHHTSCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGG-----GGGGEEEEETTCT
T ss_pred hhHHHhcCCCCHHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccc-----cccceEEeccccc
Confidence 45788899999999999999999999998887777899999999999999999999874321 1445677775443
Q ss_pred cccccccccHHHHHHHHHHHHHh-----cCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhc--CCCeEEEEecCchh
Q 002012 337 VAGTCYRGDFEKRLKAVLKEVTK-----SNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLG--RGELRCIGATTLNE 409 (982)
Q Consensus 337 ~~~~~~~g~~e~~l~~l~~~~~~-----~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le--~g~i~vI~at~~~~ 409 (982)
.. ...+...+..... ...+.||||||+|.+. ....+.|..+++ ...+.+|++|+...
T Consensus 80 ~~--------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~--------~~~~~~l~~~l~~~~~~~~~i~~~~~~~ 143 (226)
T 2chg_A 80 RG--------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALT--------ADAQAALRRTMEMYSKSCRFILSCNYVS 143 (226)
T ss_dssp TC--------HHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSC--------HHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred cC--------hHHHHHHHHHHhcccCCCccCceEEEEeChhhcC--------HHHHHHHHHHHHhcCCCCeEEEEeCChh
Confidence 21 1122233333322 1457899999999985 345567777776 35788899988876
Q ss_pred HhhhhhcChHHHhccceEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCCcchhhHHHHHHH
Q 002012 410 YRNYIEKDPALERRFQQVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLPDKAIDLVDEAA 489 (982)
Q Consensus 410 ~~~~~~~d~al~rRf~~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~p~~a~~lld~a~ 489 (982)
.+++++.+||..+.+++|+.+++..+++..... .+..++++++..++..+.+ .|..++.+++.++
T Consensus 144 -----~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~l~~~~~g------~~r~l~~~l~~~~ 208 (226)
T 2chg_A 144 -----RIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEK----EGVKITEDGLEALIYISGG------DFRKAINALQGAA 208 (226)
T ss_dssp -----GSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHH----HTCCBCHHHHHHHHHHHTT------CHHHHHHHHHHHH
T ss_pred -----hcCHHHHHhCceeecCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCC------CHHHHHHHHHHHH
Confidence 679999999999999999999999999877765 4677999999998887654 3567777777666
Q ss_pred HH
Q 002012 490 AK 491 (982)
Q Consensus 490 ~~ 491 (982)
..
T Consensus 209 ~~ 210 (226)
T 2chg_A 209 AI 210 (226)
T ss_dssp HT
T ss_pred hc
Confidence 43
No 59
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.71 E-value=4.6e-17 Score=185.66 Aligned_cols=200 Identities=25% Similarity=0.375 Sum_probs=146.2
Q ss_pred hhhcccccchHHHHHHHHHHHHHh--------cCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccc
Q 002012 660 VLHKRVIGQDIAVKSVADAIRRSR--------AGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSE 731 (982)
Q Consensus 660 ~l~~~iiGq~~a~~~l~~~i~~~~--------~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~ 731 (982)
..+.+|.|.+++++.|.+.+.... .|.. .|. .+||+||||||||++|+++|..+ +.+|+.+++++
T Consensus 169 v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~---~pr-GiLL~GPPGtGKT~lakAiA~~~---~~~~~~v~~~~ 241 (428)
T 4b4t_K 169 VTYADVGGLDMQKQEIREAVELPLVQADLYEQIGID---PPR-GVLLYGPPGTGKTMLVKAVANST---KAAFIRVNGSE 241 (428)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCC---CCC-EEEEESCTTTTHHHHHHHHHHHH---TCEEEEEEGGG
T ss_pred CCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCc-eEEEECCCCCCHHHHHHHHHHHh---CCCeEEEecch
Confidence 357899999999999999885422 2433 223 49999999999999999999998 88999999998
Q ss_pred cccccccccccCCCCCccccccC--CchhHHHhhCCCeEEEEccccccC--------------HHHHHHHHHhhhcCcee
Q 002012 732 YMEKHSVSRLVGAPPGYVGYEEG--GQLTEVVRRRPYSVVLFDEIEKAH--------------QDVFNILLQLLDDGRIT 795 (982)
Q Consensus 732 ~~~~~~~~~l~g~~~g~vg~~~~--~~l~~~l~~~~~~Vl~lDEidkl~--------------~~~~~~Ll~~le~g~~~ 795 (982)
+... |+|..+. +.++...+...++||||||+|.+. ..+.+.||..|+.-.
T Consensus 242 l~~~------------~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~-- 307 (428)
T 4b4t_K 242 FVHK------------YLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFD-- 307 (428)
T ss_dssp TCCS------------SCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSC--
T ss_pred hhcc------------ccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCC--
Confidence 7532 4444332 356777778888999999999762 136777888887411
Q ss_pred cCCCcEEecccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHh--ccccccccC-CCChhHH
Q 002012 796 DSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLN--RIDEYIVFQ-PLDSKEI 872 (982)
Q Consensus 796 d~~g~~~~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~--Rid~ii~F~-pl~~~~l 872 (982)
...+++||+|||.... ++|+|+. |||..|.|+ +++.++.
T Consensus 308 -------~~~~v~vI~aTN~~~~-------------------------------LD~AllRpGRfd~~I~~p~lPd~~~R 349 (428)
T 4b4t_K 308 -------QSTNVKVIMATNRADT-------------------------------LDPALLRPGRLDRKIEFPSLRDRRER 349 (428)
T ss_dssp -------SSCSEEEEEEESCSSS-------------------------------CCHHHHSSSSEEEEEECCSSCCHHHH
T ss_pred -------CCCCEEEEEecCChhh-------------------------------cChhhhcCCcceEEEEcCCCCCHHHH
Confidence 1246899999997643 7889985 999999996 6788999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHH
Q 002012 873 SKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEI 930 (982)
Q Consensus 873 ~~il~~~l~~~~~~~~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~l~~~l 930 (982)
..|++..++. ....-.++ ++.|+.. ...|.+++|+.++......++
T Consensus 350 ~~Il~~~~~~-------~~l~~~~d---l~~lA~~--t~G~sgadi~~l~~eA~~~a~ 395 (428)
T 4b4t_K 350 RLIFGTIASK-------MSLAPEAD---LDSLIIR--NDSLSGAVIAAIMQEAGLRAV 395 (428)
T ss_dssp HHHHHHHHHS-------SCBCTTCC---HHHHHHH--TTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-------CCCCcccC---HHHHHHH--CCCCCHHHHHHHHHHHHHHHH
Confidence 9998877654 22112222 5666664 245677899999988655544
No 60
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.71 E-value=1.5e-16 Score=184.54 Aligned_cols=199 Identities=23% Similarity=0.330 Sum_probs=148.8
Q ss_pred CCCCCcccchHHHHHHHHHhcc------------CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEec
Q 002012 266 GKLDPVIGRDDEIRRCIQILSR------------RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDM 333 (982)
Q Consensus 266 ~~l~~liG~~~~i~~l~~~L~~------------~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~ 333 (982)
-+|++++|.++.++.+.+++.. ..+.+++|+||||||||++|+++|..+ +.+++.+++
T Consensus 13 ~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~----------~~~f~~is~ 82 (476)
T 2ce7_A 13 VTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA----------NVPFFHISG 82 (476)
T ss_dssp CCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH----------TCCEEEEEG
T ss_pred CCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc----------CCCeeeCCH
Confidence 4788999999977666654321 235679999999999999999999988 788999999
Q ss_pred ccccccccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCC---Cc---hhhHHHHHHhhhc----CCCeEEEE
Q 002012 334 ASLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQ---SG---AMDASNMLKPMLG----RGELRCIG 403 (982)
Q Consensus 334 ~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~---~~---~~~~~~~L~~~le----~g~i~vI~ 403 (982)
+++.. .+.|....+++.+|..+.. ..++||||||+|.+...++. ++ .....+.|+..++ ...+.+|+
T Consensus 83 ~~~~~--~~~g~~~~~~r~lf~~A~~-~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIa 159 (476)
T 2ce7_A 83 SDFVE--LFVGVGAARVRDLFAQAKA-HAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMA 159 (476)
T ss_dssp GGTTT--CCTTHHHHHHHHHHHHHHH-TCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEE
T ss_pred HHHHH--HHhcccHHHHHHHHHHHHh-cCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEE
Confidence 88874 4778888889999998876 56889999999999765432 11 1234455555553 46899999
Q ss_pred ecCchhHhhhhhcChHHHh--ccc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHH-HHHHHHHhhhhhccCCCcc
Q 002012 404 ATTLNEYRNYIEKDPALER--RFQ-QVFCDQPSVENTISILRGLRERYELHHGVKISDSA-LVSAAVLADRYITERFLPD 479 (982)
Q Consensus 404 at~~~~~~~~~~~d~al~r--Rf~-~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~-l~~~~~~s~r~i~~~~~p~ 479 (982)
+||.++ .+|+++.| ||+ .+.++.|+.+++.+||+.+..+. .+.++. +..++..+. .+.++
T Consensus 160 aTn~~~-----~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~------~l~~~v~l~~la~~t~-----G~sga 223 (476)
T 2ce7_A 160 ATNRPD-----ILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNK------PLAEDVNLEIIAKRTP-----GFVGA 223 (476)
T ss_dssp EESCGG-----GSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTS------CBCTTCCHHHHHHTCT-----TCCHH
T ss_pred ecCChh-----hhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhC------CCcchhhHHHHHHhcC-----CCcHH
Confidence 999987 68999998 997 89999999999999998766542 232222 555555533 34557
Q ss_pred hhhHHHHHHHHHhh
Q 002012 480 KAIDLVDEAAAKLK 493 (982)
Q Consensus 480 ~a~~lld~a~~~~~ 493 (982)
+...++.+|+..+.
T Consensus 224 dL~~lv~~Aal~A~ 237 (476)
T 2ce7_A 224 DLENLVNEAALLAA 237 (476)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 78888888876654
No 61
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.71 E-value=1.3e-16 Score=177.84 Aligned_cols=209 Identities=19% Similarity=0.274 Sum_probs=157.5
Q ss_pred hcccccchHHHHHHHHHHHHHhcC---CCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEecccccccccc
Q 002012 662 HKRVIGQDIAVKSVADAIRRSRAG---LSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSV 738 (982)
Q Consensus 662 ~~~iiGq~~a~~~l~~~i~~~~~g---~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~ 738 (982)
+.+|+|++.+++.|.+.+...... ......|..++||+||||||||++|+++|+.+ +.+++.++++++...
T Consensus 17 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~---~~~~~~v~~~~l~~~--- 90 (322)
T 3eie_A 17 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSSSDLVSK--- 90 (322)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH---TCEEEEEEHHHHHTT---
T ss_pred HHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH---CCCEEEEchHHHhhc---
Confidence 578999999999999988533211 11123444569999999999999999999998 788999999876432
Q ss_pred ccccCCCCCcccccc--CCchhHHHhhCCCeEEEEccccccCH-----------HHHHHHHHhhhcCceecCCCcEEecc
Q 002012 739 SRLVGAPPGYVGYEE--GGQLTEVVRRRPYSVVLFDEIEKAHQ-----------DVFNILLQLLDDGRITDSQGRTVSFT 805 (982)
Q Consensus 739 ~~l~g~~~g~vg~~~--~~~l~~~l~~~~~~Vl~lDEidkl~~-----------~~~~~Ll~~le~g~~~d~~g~~~~~~ 805 (982)
|+|..+ ...++...+...++||||||||.+.+ .+++.|+..|+.-.- ...
T Consensus 91 ---------~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~--------~~~ 153 (322)
T 3eie_A 91 ---------WMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGN--------DSQ 153 (322)
T ss_dssp ---------TGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGT--------SCC
T ss_pred ---------ccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccc--------cCC
Confidence 222221 12356666777889999999998854 467888888874210 124
Q ss_pred cEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHHHHHH
Q 002012 806 NCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKD 885 (982)
Q Consensus 806 ~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~~~ 885 (982)
+++||+|||.... +++++++||+..+.|++++.++..+|++..+..
T Consensus 154 ~v~vi~atn~~~~-------------------------------ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~--- 199 (322)
T 3eie_A 154 GVLVLGATNIPWQ-------------------------------LDSAIRRRFERRIYIPLPDLAARTTMFEINVGD--- 199 (322)
T ss_dssp CEEEEEEESCGGG-------------------------------SCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTT---
T ss_pred ceEEEEecCChhh-------------------------------CCHHHHcccCeEEEeCCCCHHHHHHHHHHHhcc---
Confidence 6899999997542 788999999999999999999999999887653
Q ss_pred HHHhCCCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 002012 886 RLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAIL 935 (982)
Q Consensus 886 ~~~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~l~~~la~~~l 935 (982)
....+++..++.|+... ..|..+.|+.+++.....++.+..-
T Consensus 200 ------~~~~~~~~~l~~la~~t--~g~sg~di~~l~~~a~~~a~r~~~~ 241 (322)
T 3eie_A 200 ------TPCVLTKEDYRTLGAMT--EGYSGSDIAVVVKDALMQPIRKIQS 241 (322)
T ss_dssp ------CCCCCCHHHHHHHHHTT--TTCCHHHHHHHHHHHTTHHHHHHHH
T ss_pred ------CCCCCCHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 33567899999999863 3466799999999988888776543
No 62
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.70 E-value=5.9e-16 Score=172.38 Aligned_cols=210 Identities=16% Similarity=0.256 Sum_probs=156.1
Q ss_pred hcccccchHHHHHHHHHHHHHhcC---CCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEecccccccccc
Q 002012 662 HKRVIGQDIAVKSVADAIRRSRAG---LSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSV 738 (982)
Q Consensus 662 ~~~iiGq~~a~~~l~~~i~~~~~g---~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~ 738 (982)
+++|+|++.+++.|.+.+...... ......|..++||+||||||||++|+++|+.+ .+.+|+.++++++...
T Consensus 11 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~--~~~~~~~i~~~~l~~~--- 85 (322)
T 1xwi_A 11 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA--NNSTFFSISSSDLVSK--- 85 (322)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHT--TSCEEEEEECCSSCCS---
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHc--CCCcEEEEEhHHHHhh---
Confidence 578999999999999988542110 11112344469999999999999999999987 3568899999876422
Q ss_pred ccccCCCCCcccccc--CCchhHHHhhCCCeEEEEccccccC-----------HHHHHHHHHhhhcCceecCCCcEEecc
Q 002012 739 SRLVGAPPGYVGYEE--GGQLTEVVRRRPYSVVLFDEIEKAH-----------QDVFNILLQLLDDGRITDSQGRTVSFT 805 (982)
Q Consensus 739 ~~l~g~~~g~vg~~~--~~~l~~~l~~~~~~Vl~lDEidkl~-----------~~~~~~Ll~~le~g~~~d~~g~~~~~~ 805 (982)
|.|..+ ...+++..+...++||||||||.+. ..+++.|+..|+.-.. ...
T Consensus 86 ---------~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~--------~~~ 148 (322)
T 1xwi_A 86 ---------WLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGV--------DND 148 (322)
T ss_dssp ---------SCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSS--------CCT
T ss_pred ---------hhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccc--------cCC
Confidence 222221 1235566667788999999999982 2467888888874211 124
Q ss_pred cEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHHHHHH
Q 002012 806 NCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKD 885 (982)
Q Consensus 806 ~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~~~ 885 (982)
+++||+|||.... +++++++||+..+.+++++.++..+|+...+..
T Consensus 149 ~v~vI~atn~~~~-------------------------------ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~--- 194 (322)
T 1xwi_A 149 GILVLGATNIPWV-------------------------------LDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGT--- 194 (322)
T ss_dssp TEEEEEEESCTTT-------------------------------SCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTT---
T ss_pred CEEEEEecCCccc-------------------------------CCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhc---
Confidence 6899999997642 788999999999999999999999999877653
Q ss_pred HHHhCCCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 002012 886 RLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAIL 935 (982)
Q Consensus 886 ~~~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~l~~~la~~~l 935 (982)
....+++..++.|+.. ...|..++|+.+++.....++-+.+.
T Consensus 195 ------~~~~l~~~~l~~la~~--t~G~sgadl~~l~~~A~~~a~r~~~~ 236 (322)
T 1xwi_A 195 ------TQNSLTEADFRELGRK--TDGYSGADISIIVRDALMQPVRKVQS 236 (322)
T ss_dssp ------CCBCCCHHHHHHHHHT--CTTCCHHHHHHHHHHHHTHHHHHHHH
T ss_pred ------CCCCCCHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 2356789999999986 34577799999999988888876553
No 63
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.70 E-value=1.7e-16 Score=176.89 Aligned_cols=202 Identities=20% Similarity=0.313 Sum_probs=154.4
Q ss_pred HHHhhhhhHHHhhcCCCCCcccchHHHHHHHHHhccCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEE
Q 002012 252 LEKYGNDLTELARSGKLDPVIGRDDEIRRCIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISL 331 (982)
Q Consensus 252 l~~~~~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l 331 (982)
+.....+|.++++|..|++++|+++.++.+...+.....++++|+||||||||++|+.+++.+.... ....++.+
T Consensus 8 ~~~~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~-----~~~~~~~~ 82 (327)
T 1iqp_A 8 VKVLEKPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGEN-----WRHNFLEL 82 (327)
T ss_dssp HHHTTSCHHHHTCCCSTTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGG-----HHHHEEEE
T ss_pred hcccCCchhhccCCCCHHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCc-----ccCceEEe
Confidence 4455678999999999999999999999999998887777899999999999999999999874321 12346677
Q ss_pred ecccccccccccccHHHHHHHHHHHHHh-----cCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcC--CCeEEEEe
Q 002012 332 DMASLVAGTCYRGDFEKRLKAVLKEVTK-----SNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGR--GELRCIGA 404 (982)
Q Consensus 332 ~~~~l~~~~~~~g~~e~~l~~l~~~~~~-----~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~--g~i~vI~a 404 (982)
++++.... ..+...+..... ..++.||||||+|.+. .+.++.|+..++. ..+.+|++
T Consensus 83 ~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~--------~~~~~~L~~~le~~~~~~~~i~~ 146 (327)
T 1iqp_A 83 NASDERGI--------NVIREKVKEFARTKPIGGASFKIIFLDEADALT--------QDAQQALRRTMEMFSSNVRFILS 146 (327)
T ss_dssp ETTCHHHH--------HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSC--------HHHHHHHHHHHHHTTTTEEEEEE
T ss_pred eccccCch--------HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCC--------HHHHHHHHHHHHhcCCCCeEEEE
Confidence 65543211 111222222221 1446799999999985 4566778888874 57889999
Q ss_pred cCchhHhhhhhcChHHHhccceEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCCcchhhHH
Q 002012 405 TTLNEYRNYIEKDPALERRFQQVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLPDKAIDL 484 (982)
Q Consensus 405 t~~~~~~~~~~~d~al~rRf~~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~p~~a~~l 484 (982)
|+... .+.+++.+||..+.+.+|+.+++..+++..... .++.++++++..++..+.+ .+..+..+
T Consensus 147 ~~~~~-----~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~~----~~~~~~~~~~~~l~~~~~g------~~r~~~~~ 211 (327)
T 1iqp_A 147 CNYSS-----KIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAEN----EGLELTEEGLQAILYIAEG------DMRRAINI 211 (327)
T ss_dssp ESCGG-----GSCHHHHHTEEEEECCCCCHHHHHHHHHHHHHT----TTCEECHHHHHHHHHHHTT------CHHHHHHH
T ss_pred eCCcc-----ccCHHHHhhCcEEEecCCCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHHCCC------CHHHHHHH
Confidence 88876 689999999999999999999999998877664 5788999999999988764 34777777
Q ss_pred HHHHH
Q 002012 485 VDEAA 489 (982)
Q Consensus 485 ld~a~ 489 (982)
++.+.
T Consensus 212 l~~~~ 216 (327)
T 1iqp_A 212 LQAAA 216 (327)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76555
No 64
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.69 E-value=3.1e-16 Score=177.08 Aligned_cols=210 Identities=19% Similarity=0.269 Sum_probs=154.7
Q ss_pred hhcccccchHHHHHHHHHHHHHhcC---CCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccc
Q 002012 661 LHKRVIGQDIAVKSVADAIRRSRAG---LSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHS 737 (982)
Q Consensus 661 l~~~iiGq~~a~~~l~~~i~~~~~g---~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~ 737 (982)
-+.+|+|++.+++.|..++...... ......|..++||+||||||||++|+++|+.+ +.+++.++++++...
T Consensus 49 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~---~~~~~~v~~~~l~~~-- 123 (355)
T 2qp9_X 49 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSSSDLVSK-- 123 (355)
T ss_dssp CGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH---TCEEEEEEHHHHHSC--
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCCEEEeeHHHHhhh--
Confidence 3578999999999999888543110 01112334459999999999999999999998 788999998876432
Q ss_pred cccccCCCCCcccccc--CCchhHHHhhCCCeEEEEccccccCH-----------HHHHHHHHhhhcCceecCCCcEEec
Q 002012 738 VSRLVGAPPGYVGYEE--GGQLTEVVRRRPYSVVLFDEIEKAHQ-----------DVFNILLQLLDDGRITDSQGRTVSF 804 (982)
Q Consensus 738 ~~~l~g~~~g~vg~~~--~~~l~~~l~~~~~~Vl~lDEidkl~~-----------~~~~~Ll~~le~g~~~d~~g~~~~~ 804 (982)
|.|..+ ...++...+...++||||||||.+.+ .+++.|+..|+.-. ...
T Consensus 124 ----------~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~--------~~~ 185 (355)
T 2qp9_X 124 ----------WMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVG--------NDS 185 (355)
T ss_dssp ----------C---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC-----------
T ss_pred ----------hcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhccc--------ccC
Confidence 222211 12345556667789999999999873 36888888887421 012
Q ss_pred ccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHHHHH
Q 002012 805 TNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVK 884 (982)
Q Consensus 805 ~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~~ 884 (982)
.+++||+|||.... +++++++||+..+.|++++.++..+|+...+..
T Consensus 186 ~~v~vI~atn~~~~-------------------------------ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~-- 232 (355)
T 2qp9_X 186 QGVLVLGATNIPWQ-------------------------------LDSAIRRRFERRIYIPLPDLAARTTMFEINVGD-- 232 (355)
T ss_dssp CCEEEEEEESCGGG-------------------------------SCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTT--
T ss_pred CCeEEEeecCCccc-------------------------------CCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhh--
Confidence 46899999997532 788999999999999999999999998877653
Q ss_pred HHHHhCCCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 002012 885 DRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAIL 935 (982)
Q Consensus 885 ~~~~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~l~~~la~~~l 935 (982)
....+++..++.|+... ..|..+.|+.+++..+..++.+..-
T Consensus 233 -------~~~~~~~~~l~~la~~t--~G~sg~dl~~l~~~A~~~a~~~~~~ 274 (355)
T 2qp9_X 233 -------TPSVLTKEDYRTLGAMT--EGYSGSDIAVVVKDALMQPIRKIQS 274 (355)
T ss_dssp -------SCBCCCHHHHHHHHHHT--TTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------CCCCCCHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 22457888999999863 3466799999999988888876543
No 65
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.69 E-value=2.1e-16 Score=178.41 Aligned_cols=203 Identities=19% Similarity=0.233 Sum_probs=152.7
Q ss_pred hhhhhHHHhhcCCCCCcccchHHHHHHHHHhccCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecc
Q 002012 255 YGNDLTELARSGKLDPVIGRDDEIRRCIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMA 334 (982)
Q Consensus 255 ~~~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~ 334 (982)
-..+|.++++|..+++++|+++.++.+...+......+++|+||||||||++|+++++.+.... .....++.++++
T Consensus 23 ~~~~~~~k~~p~~~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~----~~~~~~~~~~~~ 98 (353)
T 1sxj_D 23 AQQPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPD----LMKSRILELNAS 98 (353)
T ss_dssp ---CHHHHTCCSSTTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHH----HHTTSEEEECSS
T ss_pred cCccHHHhcCCCCHHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCc----ccccceEEEccc
Confidence 3468999999999999999999999999998887667899999999999999999999874210 013467777766
Q ss_pred cccccccccccHHHHHHHHHHHHHh---------------cCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcC--C
Q 002012 335 SLVAGTCYRGDFEKRLKAVLKEVTK---------------SNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGR--G 397 (982)
Q Consensus 335 ~l~~~~~~~g~~e~~l~~l~~~~~~---------------~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~--g 397 (982)
+.... + .+...+..... ...+.||||||+|.+. ...++.|+..++. .
T Consensus 99 ~~~~~----~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~--------~~~~~~Ll~~le~~~~ 162 (353)
T 1sxj_D 99 DERGI----S----IVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMT--------ADAQSALRRTMETYSG 162 (353)
T ss_dssp SCCCH----H----HHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSC--------HHHHHHHHHHHHHTTT
T ss_pred cccch----H----HHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccC--------HHHHHHHHHHHHhcCC
Confidence 54211 1 11122222111 1345699999999985 4456778888873 4
Q ss_pred CeEEEEecCchhHhhhhhcChHHHhccceEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCC
Q 002012 398 ELRCIGATTLNEYRNYIEKDPALERRFQQVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFL 477 (982)
Q Consensus 398 ~i~vI~at~~~~~~~~~~~d~al~rRf~~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~ 477 (982)
...+|++|+... .+++++.+||..+.+.+|+.+++..+++..... .++.++++++..++.++.++
T Consensus 163 ~~~~il~~~~~~-----~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~----~~~~i~~~~l~~l~~~~~G~------ 227 (353)
T 1sxj_D 163 VTRFCLICNYVT-----RIIDPLASQCSKFRFKALDASNAIDRLRFISEQ----ENVKCDDGVLERILDISAGD------ 227 (353)
T ss_dssp TEEEEEEESCGG-----GSCHHHHHHSEEEECCCCCHHHHHHHHHHHHHT----TTCCCCHHHHHHHHHHTSSC------
T ss_pred CceEEEEeCchh-----hCcchhhccCceEEeCCCCHHHHHHHHHHHHHH----hCCCCCHHHHHHHHHHcCCC------
Confidence 677888888776 689999999999999999999999998877654 57889999999999997744
Q ss_pred cchhhHHHHHHHHHh
Q 002012 478 PDKAIDLVDEAAAKL 492 (982)
Q Consensus 478 p~~a~~lld~a~~~~ 492 (982)
++.++.+++.+....
T Consensus 228 ~r~~~~~l~~~~~~~ 242 (353)
T 1sxj_D 228 LRRGITLLQSASKGA 242 (353)
T ss_dssp HHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 577888887776543
No 66
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.68 E-value=1.4e-16 Score=176.96 Aligned_cols=201 Identities=22% Similarity=0.272 Sum_probs=152.3
Q ss_pred hhhHHHhhcCCCCCcccchHHHHHHHHHhccCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccc
Q 002012 257 NDLTELARSGKLDPVIGRDDEIRRCIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASL 336 (982)
Q Consensus 257 ~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l 336 (982)
.+|.++++|..+++++|+++.++.+...+.....++++|+||||||||++|+.+++.+.... .+..++.+++++.
T Consensus 5 ~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~-----~~~~~~~~~~~~~ 79 (319)
T 2chq_A 5 EIWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGEN-----WRDNFIEMNASDE 79 (319)
T ss_dssp -CTTTTTSCSSGGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTC-----HHHHCEEEETTST
T ss_pred ccHHHhcCCCCHHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCc-----ccCCeEEEeCccc
Confidence 46889999999999999999999999988887777899999999999999999999974321 1345677776654
Q ss_pred cccccccccHHHHHHHHHHHHH-hcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcC--CCeEEEEecCchhHhhh
Q 002012 337 VAGTCYRGDFEKRLKAVLKEVT-KSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGR--GELRCIGATTLNEYRNY 413 (982)
Q Consensus 337 ~~~~~~~g~~e~~l~~l~~~~~-~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~--g~i~vI~at~~~~~~~~ 413 (982)
... ......+........ ..+.+.|+||||+|.+. .+..+.|+.+++. ..+.+|++|+...
T Consensus 80 ~~~----~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~--------~~~~~~L~~~le~~~~~~~~i~~~~~~~---- 143 (319)
T 2chq_A 80 RGI----DVVRHKIKEFARTAPIGGAPFKIIFLDEADALT--------ADAQAALRRTMEMYSKSCRFILSCNYVS---- 143 (319)
T ss_dssp TCT----TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSC--------HHHHHTTGGGTSSSSSSEEEEEEESCGG----
T ss_pred cCh----HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCC--------HHHHHHHHHHHHhcCCCCeEEEEeCChh----
Confidence 321 111111222110000 01346799999999985 4566778888875 6789999998876
Q ss_pred hhcChHHHhccceEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCCcchhhHHHHHHH
Q 002012 414 IEKDPALERRFQQVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLPDKAIDLVDEAA 489 (982)
Q Consensus 414 ~~~d~al~rRf~~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~p~~a~~lld~a~ 489 (982)
.+.+++.+||..+.+.+|+.+++..++.....+ .++.++++++..++..+.+. +..++.+++.+.
T Consensus 144 -~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~----~~~~i~~~~l~~l~~~~~G~------~r~~~~~l~~~~ 208 (319)
T 2chq_A 144 -RIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEK----EGVKITEDGLEALIYISGGD------FRKAINALQGAA 208 (319)
T ss_dssp -GSCHHHHTTCEEEECCCCCHHHHHHHHHHHHHT----TCCCBCHHHHHHHHHTTTTC------HHHHHHHHHHHH
T ss_pred -hcchHHHhhCeEEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC------HHHHHHHHHHHH
Confidence 689999999999999999999999998877665 57889999999998886644 366777776554
No 67
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.68 E-value=7.8e-16 Score=170.27 Aligned_cols=212 Identities=25% Similarity=0.334 Sum_probs=146.7
Q ss_pred CcccchHHHHHHHHHhcc--------------CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEeccc
Q 002012 270 PVIGRDDEIRRCIQILSR--------------RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMAS 335 (982)
Q Consensus 270 ~liG~~~~i~~l~~~L~~--------------~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~ 335 (982)
.++|+++.++.+...+.. ....+++|+||||||||++|+++++.+ +.+++.++++.
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l----------~~~~~~i~~~~ 85 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA----------NAPFIKVEATK 85 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH----------TCCEEEEEGGG
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEcchh
Confidence 489999999888877654 356789999999999999999999998 77899999988
Q ss_pred cccccccccc-HHHHHHHHHHHH----HhcCCCeEEEEccchhhhhCCCCCch----hhHHHHHHhhhcCC---------
Q 002012 336 LVAGTCYRGD-FEKRLKAVLKEV----TKSNGQIILFIDELHTIIGAGNQSGA----MDASNMLKPMLGRG--------- 397 (982)
Q Consensus 336 l~~~~~~~g~-~e~~l~~l~~~~----~~~~~~~IL~IDEi~~l~~~~~~~~~----~~~~~~L~~~le~g--------- 397 (982)
+... .|.|. ....+..++... ...+.+.||||||+|.+.......+. ..+++.|+++++.+
T Consensus 86 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~ 164 (310)
T 1ofh_A 86 FTEV-GYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMV 164 (310)
T ss_dssp GSSC-CSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEE
T ss_pred cccC-CccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccc
Confidence 7642 24432 233344544421 11122459999999999765432221 12467888888764
Q ss_pred ---CeEEEEecCchhHhhhhhcChHHHhccc-eEEecCCCHHHHHHHHH----HHHHHHhh---hcC--CccChHHHHHH
Q 002012 398 ---ELRCIGATTLNEYRNYIEKDPALERRFQ-QVFCDQPSVENTISILR----GLRERYEL---HHG--VKISDSALVSA 464 (982)
Q Consensus 398 ---~i~vI~at~~~~~~~~~~~d~al~rRf~-~i~i~~Ps~~e~~~IL~----~~~~~~~~---~~~--v~i~~~~l~~~ 464 (982)
.+.+|++++.... ....++++|.+||. .+.|++|+.+++..|++ .+..++.. ..+ +.++++++..+
T Consensus 165 ~~~~~~~i~~~~~~~~-~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l 243 (310)
T 1ofh_A 165 KTDHILFIASGAFQVA-RPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKI 243 (310)
T ss_dssp ECTTCEEEEEECCSSS-CGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHH
T ss_pred cCCcEEEEEcCCcccC-CcccCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHH
Confidence 6788988642110 11268999999997 69999999999999998 45444432 123 57999999999
Q ss_pred HHHhhhhh--ccCCCcchhhHHHHHHHHHhh
Q 002012 465 AVLADRYI--TERFLPDKAIDLVDEAAAKLK 493 (982)
Q Consensus 465 ~~~s~r~i--~~~~~p~~a~~lld~a~~~~~ 493 (982)
+..+...- .....++.+..+++.+...+.
T Consensus 244 ~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~~ 274 (310)
T 1ofh_A 244 AEAAFRVNEKTENIGARRLHTVMERLMDKIS 274 (310)
T ss_dssp HHHHHHHHHHSCCCTTHHHHHHHHHHSHHHH
T ss_pred HHHhhhhcccccccCcHHHHHHHHHHHHhhh
Confidence 99875310 113445777777777765443
No 68
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.67 E-value=6.4e-16 Score=171.90 Aligned_cols=197 Identities=19% Similarity=0.234 Sum_probs=154.1
Q ss_pred hhhHHHhhcCCCCCcccchHHHHHHHHHhccCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccc
Q 002012 257 NDLTELARSGKLDPVIGRDDEIRRCIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASL 336 (982)
Q Consensus 257 ~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l 336 (982)
.+|.++++|..+++++|+++.++.+...+.....++++|+||||+|||++|+.+++.+.+.. .+..++.+++++.
T Consensus 9 ~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~-----~~~~~~~~~~~~~ 83 (323)
T 1sxj_B 9 LPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRS-----YADGVLELNASDD 83 (323)
T ss_dssp CCHHHHTCCSSGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGG-----HHHHEEEECTTSC
T ss_pred CcHHHhcCCCCHHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCc-----ccCCEEEecCccc
Confidence 46889999999999999999999999998877777799999999999999999999974321 1345677765432
Q ss_pred cccccccccHHHHHHHHHHHHHh------cCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcC--CCeEEEEecCch
Q 002012 337 VAGTCYRGDFEKRLKAVLKEVTK------SNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGR--GELRCIGATTLN 408 (982)
Q Consensus 337 ~~~~~~~g~~e~~l~~l~~~~~~------~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~--g~i~vI~at~~~ 408 (982)
. + ...++.++..+.. .+.+.||||||+|.+. ....+.|+..++. ..+.+|++|+..
T Consensus 84 ~------~--~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~--------~~~~~~L~~~le~~~~~~~~il~~~~~ 147 (323)
T 1sxj_B 84 R------G--IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMT--------AGAQQALRRTMELYSNSTRFAFACNQS 147 (323)
T ss_dssp C------S--HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSC--------HHHHHTTHHHHHHTTTTEEEEEEESCG
T ss_pred c------C--hHHHHHHHHHHHhccccCCCCCceEEEEECcccCC--------HHHHHHHHHHHhccCCCceEEEEeCCh
Confidence 1 1 2344555555541 1236799999999985 3456777788774 578889988876
Q ss_pred hHhhhhhcChHHHhccceEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCCcchhhHHHHHH
Q 002012 409 EYRNYIEKDPALERRFQQVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLPDKAIDLVDEA 488 (982)
Q Consensus 409 ~~~~~~~~d~al~rRf~~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~p~~a~~lld~a 488 (982)
. .+.+++.+||..+.+.+|+.+++..+++..... .++.++++++..++..+.+. |..++.+++.+
T Consensus 148 ~-----~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~l~~~~~G~------~r~a~~~l~~~ 212 (323)
T 1sxj_B 148 N-----KIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKL----EDVKYTNDGLEAIIFTAEGD------MRQAINNLQST 212 (323)
T ss_dssp G-----GSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHH----HTCCBCHHHHHHHHHHHTTC------HHHHHHHHHHH
T ss_pred h-----hchhHHHhhceEEeecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC------HHHHHHHHHHH
Confidence 5 689999999999999999999999999877765 57789999999999887643 57778887766
Q ss_pred H
Q 002012 489 A 489 (982)
Q Consensus 489 ~ 489 (982)
.
T Consensus 213 ~ 213 (323)
T 1sxj_B 213 V 213 (323)
T ss_dssp H
T ss_pred H
Confidence 5
No 69
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.67 E-value=2.6e-15 Score=175.76 Aligned_cols=172 Identities=22% Similarity=0.309 Sum_probs=112.9
Q ss_pred cccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcC-------CCCceEEEeccccccc
Q 002012 663 KRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFN-------TENALVRIDMSEYMEK 735 (982)
Q Consensus 663 ~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~-------~~~~~v~i~~s~~~~~ 735 (982)
..++|++..++.+...+.+ +...++||+||||||||++|+.+|+.+.. .+.+++.+|++
T Consensus 180 d~iiGr~~~i~~l~~~l~r---------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~----- 245 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSR---------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG----- 245 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHC---------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--------
T ss_pred CCccCcHHHHHHHHHHHhc---------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC-----
Confidence 5689999999998888763 22336999999999999999999999843 24556666665
Q ss_pred cccccccCCCCCccccccC--CchhHHHhhCCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEEec
Q 002012 736 HSVSRLVGAPPGYVGYEEG--GQLTEVVRRRPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTS 813 (982)
Q Consensus 736 ~~~~~l~g~~~g~vg~~~~--~~l~~~l~~~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~ts 813 (982)
..|.|..+. +.+++.+....++||||| ...+.++.|+..|+.| ++++|++|
T Consensus 246 ----------~~~~g~~e~~~~~~~~~~~~~~~~iLfiD----~~~~a~~~L~~~L~~g-------------~v~vI~at 298 (468)
T 3pxg_A 246 ----------TKYRGEFEDRLKKVMDEIRQAGNIILFID----AAIDASNILKPSLARG-------------ELQCIGAT 298 (468)
T ss_dssp -----------------CTTHHHHHHHHHTCCCCEEEEC----C--------CCCTTSS-------------SCEEEEEC
T ss_pred ----------ccccchHHHHHHHHHHHHHhcCCeEEEEe----CchhHHHHHHHhhcCC-------------CEEEEecC
Confidence 112332221 235666667778899999 5667889999999864 47799999
Q ss_pred CCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHHHHHHHHHhCCCC
Q 002012 814 NIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKID 893 (982)
Q Consensus 814 n~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~~~~~~~~~~~ 893 (982)
|..... .. -.+++.|.+||. .|.|++++.+++..|+...+..+.. ...
T Consensus 299 ~~~e~~--~~------------------------~~~~~al~~Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~-----~~~ 346 (468)
T 3pxg_A 299 TLDEYR--KY------------------------IEKDAALERRFQ-PIQVDQPSVDESIQILQGLRDRYEA-----HHR 346 (468)
T ss_dssp CTTTTH--HH------------------------HTTCSHHHHSEE-EEECCCCCHHHHHHHHHHTTTTSGG-----GSS
T ss_pred CHHHHH--HH------------------------hhcCHHHHHhCc-cceeCCCCHHHHHHHHHHHHHHHHH-----hcC
Confidence 876410 00 015789999996 6999999999999999876544221 123
Q ss_pred ccCCHHHHHHHHhc
Q 002012 894 LHYTKEAVTLLGIL 907 (982)
Q Consensus 894 l~i~~~a~~~L~~~ 907 (982)
+.+++++++.++..
T Consensus 347 ~~i~~~al~~l~~~ 360 (468)
T 3pxg_A 347 VSITDDAIEAAVKL 360 (468)
T ss_dssp CSCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 56777777777653
No 70
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.66 E-value=5.3e-16 Score=172.95 Aligned_cols=187 Identities=21% Similarity=0.213 Sum_probs=142.4
Q ss_pred HHhhcCCCCCcccchHHHHHHHHHhcc-----CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEeccc
Q 002012 261 ELARSGKLDPVIGRDDEIRRCIQILSR-----RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMAS 335 (982)
Q Consensus 261 ~~~~~~~l~~liG~~~~i~~l~~~L~~-----~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~ 335 (982)
++++|..+++++|++..++.+...+.. ....+++|+||||||||++|+++++.+ +.+++.++++.
T Consensus 4 ~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~----------~~~~~~~~~~~ 73 (324)
T 1hqc_A 4 LALRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL----------GVNLRVTSGPA 73 (324)
T ss_dssp -CCCCCSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHH----------TCCEEEECTTT
T ss_pred cccCcccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEeccc
Confidence 467888999999999988887776642 355789999999999999999999988 67888888765
Q ss_pred ccccccccccHHHHHHHHHHHHHh-cCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCC-----------------
Q 002012 336 LVAGTCYRGDFEKRLKAVLKEVTK-SNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRG----------------- 397 (982)
Q Consensus 336 l~~~~~~~g~~e~~l~~l~~~~~~-~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g----------------- 397 (982)
+.. .. .++..+.. ...+.+|||||+|.+. ...++.|+.+++.+
T Consensus 74 ~~~--------~~---~l~~~l~~~~~~~~~l~lDEi~~l~--------~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~ 134 (324)
T 1hqc_A 74 IEK--------PG---DLAAILANSLEEGDILFIDEIHRLS--------RQAEEHLYPAMEDFVMDIVIGQGPAARTIRL 134 (324)
T ss_dssp CCS--------HH---HHHHHHTTTCCTTCEEEETTTTSCC--------HHHHHHHHHHHHHSEEEECCSSSSSCCCEEE
T ss_pred cCC--------hH---HHHHHHHHhccCCCEEEEECCcccc--------cchHHHHHHHHHhhhhHHhcccccccccccc
Confidence 532 11 22222332 2456699999999885 44566677777643
Q ss_pred ---CeEEEEecCchhHhhhhhcChHHHhccc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhc
Q 002012 398 ---ELRCIGATTLNEYRNYIEKDPALERRFQ-QVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYIT 473 (982)
Q Consensus 398 ---~i~vI~at~~~~~~~~~~~d~al~rRf~-~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~ 473 (982)
++.+|++||... .++++|.+||. .+.+..|+.+++..+++..... .++.++++++..++.++.+
T Consensus 135 ~~~~~~~i~~t~~~~-----~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~----~~~~~~~~~~~~l~~~~~G--- 202 (324)
T 1hqc_A 135 ELPRFTLIGATTRPG-----LITAPLLSRFGIVEHLEYYTPEELAQGVMRDARL----LGVRITEEAALEIGRRSRG--- 202 (324)
T ss_dssp ECCCCEEEEEESCCS-----SCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHT----TTCCCCHHHHHHHHHHSCS---
T ss_pred CCCCEEEEEeCCCcc-----cCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHHccC---
Confidence 478999999886 67899999995 8999999999999988877665 4678999999999888653
Q ss_pred cCCCcchhhHHHHHHHHH
Q 002012 474 ERFLPDKAIDLVDEAAAK 491 (982)
Q Consensus 474 ~~~~p~~a~~lld~a~~~ 491 (982)
.|..+..+++.+...
T Consensus 203 ---~~r~l~~~l~~~~~~ 217 (324)
T 1hqc_A 203 ---TMRVAKRLFRRVRDF 217 (324)
T ss_dssp ---CHHHHHHHHHHHTTT
T ss_pred ---CHHHHHHHHHHHHHH
Confidence 356677777666543
No 71
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.66 E-value=8.6e-16 Score=174.54 Aligned_cols=210 Identities=20% Similarity=0.253 Sum_probs=144.7
Q ss_pred hhHHHhhcCC-CCCcccchHHHHH---HHHHhccCC--CCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEE
Q 002012 258 DLTELARSGK-LDPVIGRDDEIRR---CIQILSRRT--KNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISL 331 (982)
Q Consensus 258 ~l~~~~~~~~-l~~liG~~~~i~~---l~~~L~~~~--~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l 331 (982)
++.+.++|.. |++++|+++.++. +...+.... ..++||+||||||||++|+++++.+.. ..+++.+
T Consensus 32 ~l~~~~~p~~~~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~--------~~~~~~~ 103 (368)
T 3uk6_A 32 GLDDALEPRQASQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGP--------DTPFTAI 103 (368)
T ss_dssp CBCTTSCBCSEETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCS--------SCCEEEE
T ss_pred CcccccCcCcchhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcc--------cCCcccc
Confidence 4556777877 9999999998665 444444433 358999999999999999999999821 2355555
Q ss_pred eccccccc-----------------------------------------------ccccccHHHHHHHHHHHHHh----c
Q 002012 332 DMASLVAG-----------------------------------------------TCYRGDFEKRLKAVLKEVTK----S 360 (982)
Q Consensus 332 ~~~~l~~~-----------------------------------------------~~~~g~~e~~l~~l~~~~~~----~ 360 (982)
++..+... ..+.|+....++..+..+.. .
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 183 (368)
T 3uk6_A 104 AGSEIFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREE 183 (368)
T ss_dssp EGGGGSCSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhh
Confidence 54332110 01223334445555544332 1
Q ss_pred CC----CeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCC--CeEEEEec---------CchhHhhhhhcChHHHhccc
Q 002012 361 NG----QIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRG--ELRCIGAT---------TLNEYRNYIEKDPALERRFQ 425 (982)
Q Consensus 361 ~~----~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g--~i~vI~at---------~~~~~~~~~~~d~al~rRf~ 425 (982)
+. +.||||||+|.+. .+.++.|+..++.. .+.++++. +.+. ...++++|.+||.
T Consensus 184 g~~~~~~~vl~IDEi~~l~--------~~~~~~L~~~le~~~~~~~ii~t~~~~~~i~~t~~~~---~~~l~~~l~sR~~ 252 (368)
T 3uk6_A 184 GKAEIIPGVLFIDEVHMLD--------IESFSFLNRALESDMAPVLIMATNRGITRIRGTSYQS---PHGIPIDLLDRLL 252 (368)
T ss_dssp TC---CBCEEEEESGGGSB--------HHHHHHHHHHTTCTTCCEEEEEESCSEEECBTSSCEE---ETTCCHHHHTTEE
T ss_pred ccccccCceEEEhhccccC--------hHHHHHHHHHhhCcCCCeeeeecccceeeeeccCCCC---cccCCHHHHhhcc
Confidence 22 4699999999986 56778888888754 33333332 2111 1268999999999
Q ss_pred eEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCCcchhhHHHHHHHHHhhhh
Q 002012 426 QVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLPDKAIDLVDEAAAKLKME 495 (982)
Q Consensus 426 ~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~p~~a~~lld~a~~~~~~~ 495 (982)
.+.+++|+.+++..||+..+.. .++.++++++..++.++.+ ..++.+.++++.|+..+...
T Consensus 253 ~i~~~~~~~~e~~~il~~~~~~----~~~~~~~~~l~~l~~~~~~-----G~~r~~~~ll~~a~~~A~~~ 313 (368)
T 3uk6_A 253 IVSTTPYSEKDTKQILRIRCEE----EDVEMSEDAYTVLTRIGLE-----TSLRYAIQLITAASLVCRKR 313 (368)
T ss_dssp EEEECCCCHHHHHHHHHHHHHH----TTCCBCHHHHHHHHHHHHH-----SCHHHHHHHHHHHHHHHHHT
T ss_pred EEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999877765 5788999999999999763 34688999999988776543
No 72
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.65 E-value=3.5e-16 Score=175.17 Aligned_cols=212 Identities=18% Similarity=0.185 Sum_probs=152.7
Q ss_pred hhhhhHHHhhcCCCCCcccchHHHHHHHHHhccCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecc
Q 002012 255 YGNDLTELARSGKLDPVIGRDDEIRRCIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMA 334 (982)
Q Consensus 255 ~~~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~ 334 (982)
|..++.+++++..+++++|+++.++.+...+.. ..+++|+||||||||++|+++++.+ +.+++.+++.
T Consensus 13 ~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~l~~--~~~vll~G~pGtGKT~la~~la~~~----------~~~~~~i~~~ 80 (331)
T 2r44_A 13 YYRNKIKEVIDEVGKVVVGQKYMINRLLIGICT--GGHILLEGVPGLAKTLSVNTLAKTM----------DLDFHRIQFT 80 (331)
T ss_dssp HHHHHHHHHHHHHTTTCCSCHHHHHHHHHHHHH--TCCEEEESCCCHHHHHHHHHHHHHT----------TCCEEEEECC
T ss_pred HHHHHHHHHHHHhccceeCcHHHHHHHHHHHHc--CCeEEEECCCCCcHHHHHHHHHHHh----------CCCeEEEecC
Confidence 456788888999999999999999998888776 4599999999999999999999988 6677777653
Q ss_pred c------ccccccc---cccHHHHHHHHHHHHHhcCC---CeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCC-----
Q 002012 335 S------LVAGTCY---RGDFEKRLKAVLKEVTKSNG---QIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRG----- 397 (982)
Q Consensus 335 ~------l~~~~~~---~g~~e~~l~~l~~~~~~~~~---~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g----- 397 (982)
. +.....+ .|.+. . ..+ ..||||||++.+. ...++.|++.++.+
T Consensus 81 ~~~~~~~l~g~~~~~~~~~~~~---------~--~~g~l~~~vl~iDEi~~~~--------~~~~~~Ll~~l~~~~~~~~ 141 (331)
T 2r44_A 81 PDLLPSDLIGTMIYNQHKGNFE---------V--KKGPVFSNFILADEVNRSP--------AKVQSALLECMQEKQVTIG 141 (331)
T ss_dssp TTCCHHHHHEEEEEETTTTEEE---------E--EECTTCSSEEEEETGGGSC--------HHHHHHHHHHHHHSEEEET
T ss_pred CCCChhhcCCceeecCCCCceE---------e--ccCcccccEEEEEccccCC--------HHHHHHHHHHHhcCceeeC
Confidence 1 1111000 01100 0 011 2599999999975 56677888888643
Q ss_pred --------CeEEEEecCchhHhhhhhcChHHHhccc-eEEecCCCHHHHHHHHHHHHHHH------------------hh
Q 002012 398 --------ELRCIGATTLNEYRNYIEKDPALERRFQ-QVFCDQPSVENTISILRGLRERY------------------EL 450 (982)
Q Consensus 398 --------~i~vI~at~~~~~~~~~~~d~al~rRf~-~i~i~~Ps~~e~~~IL~~~~~~~------------------~~ 450 (982)
.+++|+|+|+.++...+.++++|.+||. .+.+..|+.+++.+||+...... ..
T Consensus 142 g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~ 221 (331)
T 2r44_A 142 DTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNE 221 (331)
T ss_dssp TEEEECCSSCEEEEEECTTCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHH
T ss_pred CEEEECCCCEEEEEecCCCcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHH
Confidence 5688888887765444568999999998 69999999999999997654321 01
Q ss_pred hcCCccChHHHHHHHHHhhhhhcc--------------CCCcchhhHHHHHHHHHhhhhcc
Q 002012 451 HHGVKISDSALVSAAVLADRYITE--------------RFLPDKAIDLVDEAAAKLKMEIT 497 (982)
Q Consensus 451 ~~~v~i~~~~l~~~~~~s~r~i~~--------------~~~p~~a~~lld~a~~~~~~~~~ 497 (982)
..++.++++++.+++.++...... ...++.++.++..|.+.+.+...
T Consensus 222 ~~~v~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~ 282 (331)
T 2r44_A 222 INKVTISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNR 282 (331)
T ss_dssp HHTCBCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTC
T ss_pred hccCCCCHHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCC
Confidence 246788999999888876533222 23577777888777776665443
No 73
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.65 E-value=3.9e-15 Score=157.65 Aligned_cols=203 Identities=23% Similarity=0.199 Sum_probs=148.9
Q ss_pred hhhHHHhhcCCCCCcccchHHHHHHHHHhccCCCC-CcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCC------------
Q 002012 257 NDLTELARSGKLDPVIGRDDEIRRCIQILSRRTKN-NPVIIGEPGVGKTAIAEGLAQRIVRGDVPETL------------ 323 (982)
Q Consensus 257 ~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~-~iLL~GppGvGKT~la~~la~~l~~~~~p~~l------------ 323 (982)
.+|.++++|..+++++|++++++.+...+...... .++|+||||+|||++++.+++.+.........
T Consensus 11 ~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (250)
T 1njg_A 11 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIE 90 (250)
T ss_dssp CCHHHHTCCCSGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHH
T ss_pred HHHhhccCCccHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHh
Confidence 45788999999999999999999999988775443 57899999999999999999988543211000
Q ss_pred --CCCeEEEEecccccccccccccHHHHHHHHHHHHHh---cCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcC--
Q 002012 324 --QNRKLISLDMASLVAGTCYRGDFEKRLKAVLKEVTK---SNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGR-- 396 (982)
Q Consensus 324 --~~~~v~~l~~~~l~~~~~~~g~~e~~l~~l~~~~~~---~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~-- 396 (982)
....++.++... ......+..++..+.. .+++.+|||||+|.+. ....+.|...++.
T Consensus 91 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~--------~~~~~~l~~~l~~~~ 154 (250)
T 1njg_A 91 QGRFVDLIEIDAAS--------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS--------RHSFNALLKTLEEPP 154 (250)
T ss_dssp TTCCSSEEEEETTC--------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSC--------HHHHHHHHHHHHSCC
T ss_pred ccCCcceEEecCcc--------cccHHHHHHHHHHhhhchhcCCceEEEEECccccc--------HHHHHHHHHHHhcCC
Confidence 001233333211 1122334455544321 2346899999999974 4556777777764
Q ss_pred CCeEEEEecCchhHhhhhhcChHHHhccceEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCC
Q 002012 397 GELRCIGATTLNEYRNYIEKDPALERRFQQVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERF 476 (982)
Q Consensus 397 g~i~vI~at~~~~~~~~~~~d~al~rRf~~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~ 476 (982)
..+.+|++|+... .+++++.+|+..+.+++|+.+++.++++..... .++.++++++..++..+.+
T Consensus 155 ~~~~~i~~t~~~~-----~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~----~~~~~~~~~~~~l~~~~~G------ 219 (250)
T 1njg_A 155 EHVKFLLATTDPQ-----KLPVTILSRCLQFHLKALDVEQIRHQLEHILNE----EHIAHEPRALQLLARAAEG------ 219 (250)
T ss_dssp TTEEEEEEESCGG-----GSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHH----TTCCBCHHHHHHHHHHHTT------
T ss_pred CceEEEEEeCChH-----hCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHHcCC------
Confidence 5788999998776 678999999999999999999999999877765 5778999999999888754
Q ss_pred CcchhhHHHHHHHH
Q 002012 477 LPDKAIDLVDEAAA 490 (982)
Q Consensus 477 ~p~~a~~lld~a~~ 490 (982)
.|..+..+++.+..
T Consensus 220 ~~~~~~~~~~~~~~ 233 (250)
T 1njg_A 220 SLRDALSLTDQAIA 233 (250)
T ss_dssp CHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHh
Confidence 46888888887753
No 74
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.65 E-value=2e-15 Score=175.49 Aligned_cols=212 Identities=16% Similarity=0.242 Sum_probs=152.1
Q ss_pred hcccccchHHHHHHHHHHHHHhcC---CCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEecccccccccc
Q 002012 662 HKRVIGQDIAVKSVADAIRRSRAG---LSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSV 738 (982)
Q Consensus 662 ~~~iiGq~~a~~~l~~~i~~~~~g---~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~ 738 (982)
+.+|+|++.+++.|.+.+...... ......|..++||+||||||||++|+++|..+ .+.+|+.++++++...
T Consensus 133 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~--~~~~~~~v~~~~l~~~--- 207 (444)
T 2zan_A 133 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA--NNSTFFSISSSDLVSK--- 207 (444)
T ss_dssp GGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC--CSSEEEEECCC--------
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc--CCCCEEEEeHHHHHhh---
Confidence 578999999999999887432110 00112344569999999999999999999987 2568999999876422
Q ss_pred ccccCCCCCccccccCCchhHHHhhCCCeEEEEccccccC-----------HHHHHHHHHhhhcCceecCCCcEEecccE
Q 002012 739 SRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEIEKAH-----------QDVFNILLQLLDDGRITDSQGRTVSFTNC 807 (982)
Q Consensus 739 ~~l~g~~~g~vg~~~~~~l~~~l~~~~~~Vl~lDEidkl~-----------~~~~~~Ll~~le~g~~~d~~g~~~~~~~~ 807 (982)
++|..... ...++..++...++||||||||.+. ..+++.|+..|+.-. ....++
T Consensus 208 --~~g~~~~~-----~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~--------~~~~~v 272 (444)
T 2zan_A 208 --WLGESEKL-----VKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVG--------VDNDGI 272 (444)
T ss_dssp ------CCCT-----HHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSS--------CCCSSC
T ss_pred --hcchHHHH-----HHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcc--------cCCCCE
Confidence 22222111 1235666667788999999999883 357888888887421 112468
Q ss_pred EEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHHHHHHHH
Q 002012 808 VVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRL 887 (982)
Q Consensus 808 iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~~~~~ 887 (982)
+||+|||.... ++|++++||+.++.|++++.++...|+...+..
T Consensus 273 ~vI~atn~~~~-------------------------------ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~----- 316 (444)
T 2zan_A 273 LVLGATNIPWV-------------------------------LDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGS----- 316 (444)
T ss_dssp EEEEEESCGGG-------------------------------SCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTT-----
T ss_pred EEEecCCCccc-------------------------------cCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhc-----
Confidence 99999997532 788999999999999999999999998877653
Q ss_pred HhCCCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 002012 888 KQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAIL 935 (982)
Q Consensus 888 ~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~l~~~la~~~l 935 (982)
....+++..++.|+... ..|..+.|..+++..+..++-+.+-
T Consensus 317 ----~~~~l~~~~l~~la~~t--~G~sgadl~~l~~~a~~~a~r~~~~ 358 (444)
T 2zan_A 317 ----TQNSLTEADFQELGRKT--DGYSGADISIIVRDALMQPVRKVQS 358 (444)
T ss_dssp ----SCEECCHHHHHHHHHHT--TTCCHHHHHHHHHHHHTHHHHHHHH
T ss_pred ----CCCCCCHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 23567888999998863 4567799999999988888866543
No 75
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.64 E-value=2.1e-15 Score=168.10 Aligned_cols=194 Identities=18% Similarity=0.232 Sum_probs=145.0
Q ss_pred hcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccccccc
Q 002012 662 HKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRL 741 (982)
Q Consensus 662 ~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l 741 (982)
+..++|++.++..+...+...... ..+..+++|+||||||||++|+++++.+ +.+++.++|+.+...
T Consensus 11 ~~~~ig~~~~~~~l~~~l~~~~~~----~~~~~~vll~G~~GtGKT~la~~i~~~~---~~~~~~~~~~~~~~~------ 77 (324)
T 1hqc_A 11 LDEYIGQERLKQKLRVYLEAAKAR----KEPLEHLLLFGPPGLGKTTLAHVIAHEL---GVNLRVTSGPAIEKP------ 77 (324)
T ss_dssp TTTCCSCHHHHHHHHHHHHHHHHH----CSCCCCCEEECCTTCCCHHHHHHHHHHH---TCCEEEECTTTCCSH------
T ss_pred HHHhhCHHHHHHHHHHHHHHHHcc----CCCCCcEEEECCCCCCHHHHHHHHHHHh---CCCEEEEeccccCCh------
Confidence 367999999999999888765321 1122359999999999999999999988 678888888765321
Q ss_pred cCCCCCccccccCCchhHHHhh--CCCeEEEEccccccCHHHHHHHHHhhhcCceecCC-------CcEEecccEEEEEe
Q 002012 742 VGAPPGYVGYEEGGQLTEVVRR--RPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQ-------GRTVSFTNCVVIMT 812 (982)
Q Consensus 742 ~g~~~g~vg~~~~~~l~~~l~~--~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~-------g~~~~~~~~iiI~t 812 (982)
+.+.+.+.. +.+++|||||++.+++..++.|+.+++++.+..-. .......++++|++
T Consensus 78 -------------~~l~~~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~ 144 (324)
T 1hqc_A 78 -------------GDLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGA 144 (324)
T ss_dssp -------------HHHHHHHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEE
T ss_pred -------------HHHHHHHHHhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEe
Confidence 124444444 55689999999999999999999999987654211 11223457899999
Q ss_pred cCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHHHHHHHHHhCCC
Q 002012 813 SNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKI 892 (982)
Q Consensus 813 sn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~~~~~~~~~~ 892 (982)
||.... |+++|++||+.++.|+|++.+++..++...+.. .+
T Consensus 145 t~~~~~-------------------------------~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~-------~~- 185 (324)
T 1hqc_A 145 TTRPGL-------------------------------ITAPLLSRFGIVEHLEYYTPEELAQGVMRDARL-------LG- 185 (324)
T ss_dssp ESCCSS-------------------------------CSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHT-------TT-
T ss_pred CCCccc-------------------------------CCHHHHhcccEEEecCCCCHHHHHHHHHHHHHh-------cC-
Confidence 996532 788899999889999999999988887766543 23
Q ss_pred CccCCHHHHHHHHhcCCCCCCCchHHHHHHHH
Q 002012 893 DLHYTKEAVTLLGILGFDPNFGARPVKRVIQQ 924 (982)
Q Consensus 893 ~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~ 924 (982)
+.+++++++.|..++ .+ ..|.+.+.++.
T Consensus 186 -~~~~~~~~~~l~~~~-~G--~~r~l~~~l~~ 213 (324)
T 1hqc_A 186 -VRITEEAALEIGRRS-RG--TMRVAKRLFRR 213 (324)
T ss_dssp -CCCCHHHHHHHHHHS-CS--CHHHHHHHHHH
T ss_pred -CCCCHHHHHHHHHHc-cC--CHHHHHHHHHH
Confidence 679999999999873 33 34677776665
No 76
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.64 E-value=5.5e-15 Score=167.98 Aligned_cols=204 Identities=23% Similarity=0.191 Sum_probs=152.0
Q ss_pred hhhHHHhhcCCCCCcccchHHHHHHHHHhccCCCCC-cEEeCCCCCcHHHHHHHHHHHhhcCCCCCC-------------
Q 002012 257 NDLTELARSGKLDPVIGRDDEIRRCIQILSRRTKNN-PVIIGEPGVGKTAIAEGLAQRIVRGDVPET------------- 322 (982)
Q Consensus 257 ~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~-iLL~GppGvGKT~la~~la~~l~~~~~p~~------------- 322 (982)
.+|.++++|..+++++|+++.++.+...+......+ ++|+||||||||++|+.+++.+........
T Consensus 4 ~~l~~k~rp~~~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~ 83 (373)
T 1jr3_A 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIE 83 (373)
T ss_dssp CCHHHHTCCCSTTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHH
T ss_pred HHHHHhhCCCchhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHh
Confidence 468899999999999999999999999887765555 689999999999999999998854321100
Q ss_pred -CCCCeEEEEecccccccccccccHHHHHHHHHHHHHh---cCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcC--
Q 002012 323 -LQNRKLISLDMASLVAGTCYRGDFEKRLKAVLKEVTK---SNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGR-- 396 (982)
Q Consensus 323 -l~~~~v~~l~~~~l~~~~~~~g~~e~~l~~l~~~~~~---~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~-- 396 (982)
.....++.++...- .... .++.++..+.. .+++.||||||+|.+. ....+.|+..++.
T Consensus 84 ~~~~~~~~~~~~~~~----~~~~----~~~~l~~~~~~~~~~~~~~vliiDe~~~l~--------~~~~~~Ll~~le~~~ 147 (373)
T 1jr3_A 84 QGRFVDLIEIDAASR----TKVE----DTRDLLDNVQYAPARGRFKVYLIDEVHMLS--------RHSFNALLKTLEEPP 147 (373)
T ss_dssp TSCCSSCEEEETTCS----CCSS----CHHHHHHHTTSCCSSSSSEEEEEECGGGSC--------HHHHHHHHHHHHSCC
T ss_pred ccCCCceEEeccccc----CCHH----HHHHHHHHHhhccccCCeEEEEEECcchhc--------HHHHHHHHHHHhcCC
Confidence 00113444443211 1111 23445554432 2346799999999985 4566778888874
Q ss_pred CCeEEEEecCchhHhhhhhcChHHHhccceEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCC
Q 002012 397 GELRCIGATTLNEYRNYIEKDPALERRFQQVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERF 476 (982)
Q Consensus 397 g~i~vI~at~~~~~~~~~~~d~al~rRf~~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~ 476 (982)
..+.+|++|+... .+.+++.+||..+.+..|+.+++..+++....+ .++.++++++..++..+.+
T Consensus 148 ~~~~~Il~~~~~~-----~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~----~~~~~~~~a~~~l~~~~~G------ 212 (373)
T 1jr3_A 148 EHVKFLLATTDPQ-----KLPVTILSRCLQFHLKALDVEQIRHQLEHILNE----EHIAHEPRALQLLARAAEG------ 212 (373)
T ss_dssp SSEEEEEEESCGG-----GSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHH----HTCCBCHHHHHHHHHHSSS------
T ss_pred CceEEEEEeCChH-----hCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHCCC------
Confidence 5788999988776 678999999999999999999999999887766 5788999999999988754
Q ss_pred CcchhhHHHHHHHHH
Q 002012 477 LPDKAIDLVDEAAAK 491 (982)
Q Consensus 477 ~p~~a~~lld~a~~~ 491 (982)
.|..+..+++.+...
T Consensus 213 ~~r~~~~~l~~~~~~ 227 (373)
T 1jr3_A 213 SLRDALSLTDQAIAS 227 (373)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh
Confidence 357888888877643
No 77
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=99.64 E-value=3.1e-15 Score=202.28 Aligned_cols=459 Identities=17% Similarity=0.246 Sum_probs=250.1
Q ss_pred CCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccccccccccHHHHHHHHHHHH---Hh------
Q 002012 289 TKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGTCYRGDFEKRLKAVLKEV---TK------ 359 (982)
Q Consensus 289 ~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~~~~g~~e~~l~~l~~~~---~~------ 359 (982)
.+.++||+||||||||+++..+...+ .+..++.+++++.+... .+.+.++.. +.
T Consensus 1303 ~~~pvLL~GptGtGKT~li~~~L~~l---------~~~~~~~infS~~Tta~--------~l~~~~e~~~e~~~~~~~G~ 1365 (3245)
T 3vkg_A 1303 EHRPLILCGPPGSGKTMTLTSTLRAF---------PDFEVVSLNFSSATTPE--------LLLKTFDHHCEYKRTPSGET 1365 (3245)
T ss_dssp TTCCCEEESSTTSSHHHHHHHHGGGC---------TTEEEEEECCCTTCCHH--------HHHHHHHHHEEEEECTTSCE
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHhC---------CCCceEEEEeeCCCCHH--------HHHHHHhhcceEEeccCCCc
Confidence 45689999999999998876544332 25678888887766432 222222210 00
Q ss_pred ------cCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCC--------------CeEEEEecCchhHhhhhhcChH
Q 002012 360 ------SNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRG--------------ELRCIGATTLNEYRNYIEKDPA 419 (982)
Q Consensus 360 ------~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g--------------~i~vI~at~~~~~~~~~~~d~a 419 (982)
.++.+|+||||++.- .....|++.+..+|+++++.| ++.+|+|+|++...+...++++
T Consensus 1366 ~~~p~~~Gk~~VlFiDDiNmp--~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~R 1443 (3245)
T 3vkg_A 1366 VLRPTQLGKWLVVFCDEINLP--STDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHR 1443 (3245)
T ss_dssp EEEESSTTCEEEEEETTTTCC--CCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHH
T ss_pred ccCCCcCCceEEEEecccCCC--CccccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHH
Confidence 123479999999973 333456678889999999743 4689999998753455679999
Q ss_pred HHhccceEEecCCCHHHHHHHHHHHHHHHhhhc-CC-ccChHHHHHHHHHhhhhhccCCCcchhhHHHHHHHHHhhhhcc
Q 002012 420 LERRFQQVFCDQPSVENTISILRGLRERYELHH-GV-KISDSALVSAAVLADRYITERFLPDKAIDLVDEAAAKLKMEIT 497 (982)
Q Consensus 420 l~rRf~~i~i~~Ps~~e~~~IL~~~~~~~~~~~-~v-~i~~~~l~~~~~~s~r~i~~~~~p~~a~~lld~a~~~~~~~~~ 497 (982)
|.|||..+.++.|+.+++..|+..+...+.... .+ .+.+......+++... +...++|. .+....
T Consensus 1444 f~r~F~vi~i~~ps~esL~~If~til~~~l~~~p~l~~~~~~lv~ati~ly~~-v~~~~lp~------------~k~HY~ 1510 (3245)
T 3vkg_A 1444 FLRHAPILLVDFPSTSSLTQIYGTFNRALMKLLPNLRSFADNLTDAMVEFYSE-SQKRFTPD------------IQAHYI 1510 (3245)
T ss_dssp HHTTCCEEECCCCCHHHHHHHHHHHHHHHTTSCGGGTTSHHHHHHHHHHHHHH-HHHHSCTT------------TSTTCC
T ss_pred HHhhceEEEeCCCCHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHH-HHHhcCCC------------cCCCcc
Confidence 999999999999999999999887766543211 00 1122333333332111 11111111 011111
Q ss_pred CCccchHHHHHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q 002012 498 SKPIELDEIDRAVLKLEMEKLSLKNDTDKASKERLSKLEHDLNSLKQKQKELNDQWSREKDLMSRIRSIKEEIDR-VNLE 576 (982)
Q Consensus 498 ~~~~~l~~~~~~~~~~~~e~~~l~~~~~~~~~~~l~~~~~e~~~l~~~~~~l~~~~~~e~~~~~~~~~~~~~~~~-~~~~ 576 (982)
+.+..+..+-+.+..... .... .....+.+.|.|||.++...+.+.++-.. ....
T Consensus 1511 FnLRDLsrv~qGll~~~~---~~~~---------------------~~~~~lvrLW~HE~~RVF~DRLv~~~Dr~~f~~~ 1566 (3245)
T 3vkg_A 1511 YSPRELSRWDRALLEAIQ---TMDG---------------------CTLEGLVRLWAHEALRLFQDRLVETEEKEWTDKK 1566 (3245)
T ss_dssp CCHHHHHHHHHHHHHHHH---TSSC---------------------CCTTHHHHHHHHHHHHHHTTTCSSHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhcC---cccc---------------------CCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 223333322222211100 0000 01234778899999999865533322110 1111
Q ss_pred HHH-HHhhhcHHHHHHhhhcchHHHHHHHHHHHHhHHHHHhcCCccc--------cccCCHhHHHHHHHHhhCCCCcccc
Q 002012 577 MEA-AERDYDLNRAAELKYGTMISLQRQLEEAEKNLSEFQKSGHSLL--------REEVTDLDIAEIVSKWTGIPLSSLQ 647 (982)
Q Consensus 577 ~~~-~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--------~~~v~~~~i~~~~~~~~gi~~~~~~ 647 (982)
+.. ....+ +... +.. ...+.+ -..++.+++.+++...... ..
T Consensus 1567 l~~~~~~~F----------~~~~---------~~~------~~~pllf~~f~~~~Y~~v~~~~l~~~l~~~L~~----yn 1617 (3245)
T 3vkg_A 1567 IDEVALKHF----------PSVN---------LDA------LKRPILYSNWLTKDYQPVNRSDLREYVKARLKV----FY 1617 (3245)
T ss_dssp HHHHHHHHC----------TTSC---------GGG------GCSSCCCCSSCC----CCCHHHHHHHHHHHHHT----TC
T ss_pred HHHHHHHhc----------Ccch---------hhh------cccCcchhhhccccCccCCHHHHHHHHHHHHHH----HH
Confidence 111 11111 0000 000 000000 0122333333333221100 00
Q ss_pred hhHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEE
Q 002012 648 QSEREKLVMLEEVLHKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRI 727 (982)
Q Consensus 648 ~~~~~~l~~l~~~l~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i 727 (982)
+....-.++=.++|+..|.+.-+.. +.|.+|.||+|..|+||+++++..|... +..+..+
T Consensus 1618 ----------~~~~~m~LVlF~daleHv~RI~RIL-------~qp~GhaLLVGvgGSGkqSLtrLAa~i~---~~~vfqi 1677 (3245)
T 3vkg_A 1618 ----------EEELDVPLVLFNEVLDHILRIDRVF-------RQPQGHALLIGVSGGGKSVLSRFVAWMN---GLSIYTI 1677 (3245)
T ss_dssp ----------------CCCCCHHHHHHHHHHHHHH-------TSTTCCEEEEESTTSSHHHHHHHHHHHT---TCEEECC
T ss_pred ----------hcccCceEEeHHHHHHHHHHHHHHH-------ccCCCCeEEecCCCCcHHHHHHHHHHHh---CCeeEEE
Confidence 0011235777789999998877765 5677899999999999999999998765 4444444
Q ss_pred eccccccccccccccCCCCCccccccCCchhHHHhh----CCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEe
Q 002012 728 DMSEYMEKHSVSRLVGAPPGYVGYEEGGQLTEVVRR----RPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVS 803 (982)
Q Consensus 728 ~~s~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~----~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~ 803 (982)
..+. +|...+-...|...+++ ....|++|+|-+-.++.+++.+..+|.+|.+.+--
T Consensus 1678 ~i~k---------------~Y~~~~f~eDLk~l~~~aG~~~~~~vFL~tD~qi~~e~FLE~IN~lL~sGEVP~LF----- 1737 (3245)
T 3vkg_A 1678 KVNN---------------NYKSSDFDDDLRMLLKRAGCKEEKICFIFDESNVLESSFLERMNTLLAGGEVPGLF----- 1737 (3245)
T ss_dssp C-------------------CCHHHHHHHHHHHHHHHHTSCCCEEEEEEGGGCSSTHHHHHHHHHHHHSCCTTSS-----
T ss_pred eeeC---------------CCCHHHHHHHHHHHHHHHhcCCCCEEEEEeccccccHHHHHHHHHHhccCCccccC-----
Confidence 3322 22211111234444443 34579999999999999999999999999876421
Q ss_pred cccEEEEEecCCChHHHHHhhh----hcc---cchHHHHHHHHHHHHHHH-------------Hh--hcChHHHhccccc
Q 002012 804 FTNCVVIMTSNIGSHYILETLQ----SVQ---DSKEAVYEVMKKQVVELA-------------RQ--TFRPEFLNRIDEY 861 (982)
Q Consensus 804 ~~~~iiI~tsn~~~~~i~~~~~----~~~---~~~~~~~~~~~~~~~~~~-------------~~--~f~p~ll~Rid~i 861 (982)
+....+.+...+. ..+ ++....+..+.+++.+.+ +. .--|.|+++| .+
T Consensus 1738 ---------~~dE~~~i~~~~r~~a~~~g~~~dt~~~l~~~Fi~rvr~NLHvVL~mSPvg~~fR~R~r~fPaLvncc-tI 1807 (3245)
T 3vkg_A 1738 ---------EGEEFTALMHACKETAQRNGLILDSEEELYKYFTSQVRRNLHVVFTMNPASPDFHNRSATSPALFNRC-VL 1807 (3245)
T ss_dssp ---------CTTTHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHTTTCCEEEEECTTSTTTTC----CTHHHHHS-EE
T ss_pred ---------CHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCEEEEEECCCCHHHHHHHHHChHHhhCc-ee
Confidence 0111122222111 111 123334444544444322 11 1237899998 47
Q ss_pred cccCCCChhHHHHHHHHHHHH
Q 002012 862 IVFQPLDSKEISKIVEIQMNR 882 (982)
Q Consensus 862 i~F~pl~~~~l~~il~~~l~~ 882 (982)
--|.+-+.+.+..+...++..
T Consensus 1808 DWf~~Wp~eAL~~Va~~fl~~ 1828 (3245)
T 3vkg_A 1808 DWFGEWSPEALFQVGSEFTRN 1828 (3245)
T ss_dssp EEEESCCHHHHHHHHHHHTTT
T ss_pred eecCCCCHHHHHHHHHHHHhh
Confidence 789999999999888877653
No 78
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.64 E-value=1.9e-15 Score=170.74 Aligned_cols=206 Identities=15% Similarity=0.190 Sum_probs=148.2
Q ss_pred hhHHHhhcCCCCCcccchHHHHHHHHHh-ccCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCC-CC-----------
Q 002012 258 DLTELARSGKLDPVIGRDDEIRRCIQIL-SRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPET-LQ----------- 324 (982)
Q Consensus 258 ~l~~~~~~~~l~~liG~~~~i~~l~~~L-~~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~-l~----------- 324 (982)
+|+++++|.+|++++|+++.++.+...+ .....+|++|+||+|+||||+++.+++.+........ +.
T Consensus 3 ~w~~kyrP~~~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~ 82 (354)
T 1sxj_E 3 LWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRK 82 (354)
T ss_dssp -CTTTTCCCSGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC---------------
T ss_pred cchhccCCCCHHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccccc
Confidence 5889999999999999999999999988 6666667999999999999999999997643221100 00
Q ss_pred -------CCeEEEEecccccccccccccHHHHHHHHHHHHHh-------------cCCCeEEEEccchhhhhCCCCCchh
Q 002012 325 -------NRKLISLDMASLVAGTCYRGDFEKRLKAVLKEVTK-------------SNGQIILFIDELHTIIGAGNQSGAM 384 (982)
Q Consensus 325 -------~~~v~~l~~~~l~~~~~~~g~~e~~l~~l~~~~~~-------------~~~~~IL~IDEi~~l~~~~~~~~~~ 384 (982)
...++.++.+.. + ......+++.++.+.. ..++.|++|||++.+. .
T Consensus 83 ~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~--------~ 148 (354)
T 1sxj_E 83 LELNVVSSPYHLEITPSDM--G----NNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLT--------K 148 (354)
T ss_dssp ---CCEECSSEEEECCC----------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSC--------H
T ss_pred ceeeeecccceEEecHhhc--C----CcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccC--------H
Confidence 011223322111 0 0000123344443321 1246699999999964 4
Q ss_pred hHHHHHHhhhc--CCCeEEEEecCchhHhhhhhcChHHHhccceEEecCCCHHHHHHHHHHHHHHHhhhcCCccC-hHHH
Q 002012 385 DASNMLKPMLG--RGELRCIGATTLNEYRNYIEKDPALERRFQQVFCDQPSVENTISILRGLRERYELHHGVKIS-DSAL 461 (982)
Q Consensus 385 ~~~~~L~~~le--~g~i~vI~at~~~~~~~~~~~d~al~rRf~~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~-~~~l 461 (982)
...+.|+..++ ..+..+|.+|+... .+.+++++||..+.+.+|+.+++..+|+.++.+ .++.++ ++++
T Consensus 149 ~~~~~L~~~le~~~~~~~~Il~t~~~~-----~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~l 219 (354)
T 1sxj_E 149 DAQAALRRTMEKYSKNIRLIMVCDSMS-----PIIAPIKSQCLLIRCPAPSDSEISTILSDVVTN----ERIQLETKDIL 219 (354)
T ss_dssp HHHHHHHHHHHHSTTTEEEEEEESCSC-----SSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHH----HTCEECCSHHH
T ss_pred HHHHHHHHHHHhhcCCCEEEEEeCCHH-----HHHHHHHhhceEEecCCcCHHHHHHHHHHHHHH----cCCCCCcHHHH
Confidence 55677777776 34688888888776 688999999999999999999999999888776 578899 9999
Q ss_pred HHHHHHhhhhhccCCCcchhhHHHHHHHHHh
Q 002012 462 VSAAVLADRYITERFLPDKAIDLVDEAAAKL 492 (982)
Q Consensus 462 ~~~~~~s~r~i~~~~~p~~a~~lld~a~~~~ 492 (982)
..++..+++. +++++.+++.+....
T Consensus 220 ~~i~~~~~G~------~r~a~~~l~~~~~~~ 244 (354)
T 1sxj_E 220 KRIAQASNGN------LRVSLLMLESMALNN 244 (354)
T ss_dssp HHHHHHHTTC------HHHHHHHHTHHHHTT
T ss_pred HHHHHHcCCC------HHHHHHHHHHHHHhC
Confidence 9999987654 488888888777653
No 79
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.64 E-value=2.3e-15 Score=166.20 Aligned_cols=205 Identities=20% Similarity=0.338 Sum_probs=146.1
Q ss_pred hcccccchHHHHHHHHHHHHH--------hcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccc
Q 002012 662 HKRVIGQDIAVKSVADAIRRS--------RAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYM 733 (982)
Q Consensus 662 ~~~iiGq~~a~~~l~~~i~~~--------~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~ 733 (982)
+++|+|++.+++.|.+.+... ..+. .+..++||+||||||||++|+++|..+ +.+++.++|+++.
T Consensus 14 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~----~~~~~vLL~Gp~GtGKT~la~ala~~~---~~~~i~v~~~~l~ 86 (301)
T 3cf0_A 14 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGM----TPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPELL 86 (301)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCC----CCCSEEEEECSSSSSHHHHHHHHHHHT---TCEEEEECHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCC----CCCceEEEECCCCcCHHHHHHHHHHHh---CCCEEEEEhHHHH
Confidence 467999999999999988653 1122 222359999999999999999999987 6889999988764
Q ss_pred cccccccccCCCCCccccccCCchhHHHhhCCCeEEEEccccccCHH--------------HHHHHHHhhhcCceecCCC
Q 002012 734 EKHSVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEIEKAHQD--------------VFNILLQLLDDGRITDSQG 799 (982)
Q Consensus 734 ~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~~~~~Vl~lDEidkl~~~--------------~~~~Ll~~le~g~~~d~~g 799 (982)
. .++|..... ...++.......++||||||+|.+.+. +++.|+..|+.-.
T Consensus 87 ~-----~~~g~~~~~-----~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~------ 150 (301)
T 3cf0_A 87 T-----MWFGESEAN-----VREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS------ 150 (301)
T ss_dssp H-----HHHTTCTTH-----HHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSC------
T ss_pred h-----hhcCchHHH-----HHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhccc------
Confidence 3 233332211 123455566667799999999987653 5788999888411
Q ss_pred cEEecccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHh--ccccccccCCCChhHHHHHHH
Q 002012 800 RTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLN--RIDEYIVFQPLDSKEISKIVE 877 (982)
Q Consensus 800 ~~~~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~--Rid~ii~F~pl~~~~l~~il~ 877 (982)
...+++||+|||.... +++++++ ||+..+.|++++.++..+|++
T Consensus 151 ---~~~~v~vi~atn~~~~-------------------------------ld~al~r~gRf~~~i~i~~p~~~~r~~il~ 196 (301)
T 3cf0_A 151 ---TKKNVFIIGATNRPDI-------------------------------IDPAILRPGRLDQLIYIPLPDEKSRVAILK 196 (301)
T ss_dssp ---TTSSEEEEEEESCGGG-------------------------------SCGGGGSTTSSCEEEECCCCCHHHHHHHHH
T ss_pred ---CCCCEEEEEecCCccc-------------------------------cChHHhcCCccceEEecCCcCHHHHHHHHH
Confidence 1246899999997532 6677776 999999999999999999887
Q ss_pred HHHHHHHHHHHhCCCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 002012 878 IQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAIL 935 (982)
Q Consensus 878 ~~l~~~~~~~~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~l~~~la~~~l 935 (982)
..++. .+....++- +.|+... ..|.+++|++++++.+..++.+.+-
T Consensus 197 ~~l~~-------~~~~~~~~~---~~la~~~--~g~sg~dl~~l~~~a~~~a~~~~~~ 242 (301)
T 3cf0_A 197 ANLRK-------SPVAKDVDL---EFLAKMT--NGFSGADLTEICQRACKLAIRESIE 242 (301)
T ss_dssp HHHTT-------SCBCSSCCH---HHHHHTC--SSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcc-------CCCCccchH---HHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 76653 232223443 3445432 2344569999999988888776654
No 80
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.63 E-value=3.9e-17 Score=177.21 Aligned_cols=202 Identities=24% Similarity=0.375 Sum_probs=136.4
Q ss_pred hcCCCCCcccchHHHHHHHHHhcc------------CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEE
Q 002012 264 RSGKLDPVIGRDDEIRRCIQILSR------------RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISL 331 (982)
Q Consensus 264 ~~~~l~~liG~~~~i~~l~~~L~~------------~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l 331 (982)
++..|++++|+++.++.+.+++.. ..+.+++|+||||||||++|+++|+.+ +.+++.+
T Consensus 6 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~----------~~~~~~v 75 (268)
T 2r62_A 6 PNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA----------HVPFFSM 75 (268)
T ss_dssp CCCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHH----------TCCCCCC
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHh----------CCCEEEe
Confidence 345789999999877776665431 345679999999999999999999988 6677777
Q ss_pred ecccccccccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCc-------hhhHHHHHHhhhc-----CCCe
Q 002012 332 DMASLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSG-------AMDASNMLKPMLG-----RGEL 399 (982)
Q Consensus 332 ~~~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~-------~~~~~~~L~~~le-----~g~i 399 (982)
+++.+... +.|.....++.+|..+.. ..+.||||||+|.+.......+ .....+.|+..++ .+.+
T Consensus 76 ~~~~~~~~--~~~~~~~~~~~~~~~a~~-~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v 152 (268)
T 2r62_A 76 GGSSFIEM--FVGLGASRVRDLFETAKK-QAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPV 152 (268)
T ss_dssp CSCTTTTS--CSSSCSSSSSTTHHHHHH-SCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCC
T ss_pred chHHHHHh--hcchHHHHHHHHHHHHHh-cCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCE
Confidence 77766532 444444445567776665 4567999999999976532111 1122334444443 2358
Q ss_pred EEEEecCchhHhhhhhcChHHHh--ccc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCC
Q 002012 400 RCIGATTLNEYRNYIEKDPALER--RFQ-QVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERF 476 (982)
Q Consensus 400 ~vI~at~~~~~~~~~~~d~al~r--Rf~-~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~ 476 (982)
.+|++||.++ .+++++.| ||. .+.++.|+.+++.+||+.+...+... ++..+..++..+. .+
T Consensus 153 ~vi~ttn~~~-----~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~-----~~~~~~~la~~~~-----g~ 217 (268)
T 2r62_A 153 IVLAATNRPE-----ILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLA-----NDVNLQEVAKLTA-----GL 217 (268)
T ss_dssp EEEECBSCCT-----TSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCC-----SSCCTTTTTSSSC-----SS
T ss_pred EEEEecCCch-----hcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCC-----CccCHHHHHHHcC-----CC
Confidence 9999999987 68999999 885 89999999999999998766542111 1112333333332 33
Q ss_pred CcchhhHHHHHHHHHhh
Q 002012 477 LPDKAIDLVDEAAAKLK 493 (982)
Q Consensus 477 ~p~~a~~lld~a~~~~~ 493 (982)
.+++...+++.|...+.
T Consensus 218 ~g~dl~~l~~~a~~~a~ 234 (268)
T 2r62_A 218 AGADLANIINEAALLAG 234 (268)
T ss_dssp CHHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 45677788888876543
No 81
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.63 E-value=3.9e-15 Score=167.30 Aligned_cols=197 Identities=18% Similarity=0.272 Sum_probs=150.6
Q ss_pred hhhhHHHhhcCCCCCcccchHHHHHHHHHhccCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEeccc
Q 002012 256 GNDLTELARSGKLDPVIGRDDEIRRCIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMAS 335 (982)
Q Consensus 256 ~~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~ 335 (982)
..+|.++++|..|++++|+++.++.+...+..+..+|++|+||||+|||++++++++.+..... ...+..++.++
T Consensus 12 ~~~~~~k~rp~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~-----~~~~~~~~~~~ 86 (340)
T 1sxj_C 12 NLPWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY-----SNMVLELNASD 86 (340)
T ss_dssp CCCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH-----HHHEEEECTTS
T ss_pred CCchHHHhCCCcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc-----cceEEEEcCcc
Confidence 4579999999999999999999999998888877778999999999999999999999853211 23466666543
Q ss_pred ccccccccccHHHHHHHHHHHHHhc-----CCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcC--CCeEEEEecCch
Q 002012 336 LVAGTCYRGDFEKRLKAVLKEVTKS-----NGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGR--GELRCIGATTLN 408 (982)
Q Consensus 336 l~~~~~~~g~~e~~l~~l~~~~~~~-----~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~--g~i~vI~at~~~ 408 (982)
. .| ...++..+..+... +++.|++|||+|.+. .+.++.|+..++. ....+|++||..
T Consensus 87 ~------~~--~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~--------~~~~~~L~~~le~~~~~~~~il~~n~~ 150 (340)
T 1sxj_C 87 D------RG--IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMT--------NAAQNALRRVIERYTKNTRFCVLANYA 150 (340)
T ss_dssp C------CS--HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSC--------HHHHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred c------cc--HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCC--------HHHHHHHHHHHhcCCCCeEEEEEecCc
Confidence 2 12 22344444444321 236799999999985 4566778888874 567888888876
Q ss_pred hHhhhhhcChHHHhccceEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCCcchhhHHHHHH
Q 002012 409 EYRNYIEKDPALERRFQQVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLPDKAIDLVDEA 488 (982)
Q Consensus 409 ~~~~~~~~d~al~rRf~~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~p~~a~~lld~a 488 (982)
. .+.+++.+||..+.+..++.+++..++..++.. .++.++++++..++.+|.+.. .+++.+++.+
T Consensus 151 ~-----~i~~~i~sR~~~~~~~~l~~~~~~~~l~~~~~~----~~~~i~~~~~~~i~~~s~G~~------r~~~~~l~~~ 215 (340)
T 1sxj_C 151 H-----KLTPALLSQCTRFRFQPLPQEAIERRIANVLVH----EKLKLSPNAEKALIELSNGDM------RRVLNVLQSC 215 (340)
T ss_dssp G-----GSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHT----TTCCBCHHHHHHHHHHHTTCH------HHHHHHTTTT
T ss_pred c-----ccchhHHhhceeEeccCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH------HHHHHHHHHH
Confidence 5 789999999999999999999998888777654 578899999999999987533 5566665443
No 82
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.63 E-value=1.1e-15 Score=149.79 Aligned_cols=143 Identities=14% Similarity=0.143 Sum_probs=110.4
Q ss_pred ccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccccccccC
Q 002012 664 RVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRLVG 743 (982)
Q Consensus 664 ~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l~g 743 (982)
.++|++.+++.+.+.+..... ...++||+||||||||++|++|++.....+.+|+ ++|+.+...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~-------~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~-------- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSE-------TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA-------- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTT-------CCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS--------
T ss_pred CceeCCHHHHHHHHHHHHHhC-------CCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc--------
Confidence 589999999999998887621 1224999999999999999999998766678899 999876432
Q ss_pred CCCCccccccCCchhHHHhhCCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCChHHHHHh
Q 002012 744 APPGYVGYEEGGQLTEVVRRRPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILET 823 (982)
Q Consensus 744 ~~~g~vg~~~~~~l~~~l~~~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~i~~~ 823 (982)
....+.+..+.+++|||||||.++++.|..|+.+|+... .++.+|+|||.+......
T Consensus 66 -----------~~~~~~~~~a~~g~l~ldei~~l~~~~q~~Ll~~l~~~~-----------~~~~~I~~t~~~~~~~~~- 122 (145)
T 3n70_A 66 -----------PQLNDFIALAQGGTLVLSHPEHLTREQQYHLVQLQSQEH-----------RPFRLIGIGDTSLVELAA- 122 (145)
T ss_dssp -----------SCHHHHHHHHTTSCEEEECGGGSCHHHHHHHHHHHHSSS-----------CSSCEEEEESSCHHHHHH-
T ss_pred -----------hhhhcHHHHcCCcEEEEcChHHCCHHHHHHHHHHHhhcC-----------CCEEEEEECCcCHHHHHH-
Confidence 124456666677899999999999999999999995421 357899999987654433
Q ss_pred hhhcccchHHHHHHHHHHHHHHHHhhcChHHHhcccc-ccccCCCC
Q 002012 824 LQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDE-YIVFQPLD 868 (982)
Q Consensus 824 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~-ii~F~pl~ 868 (982)
...|+++|++|+.. .|.+|||.
T Consensus 123 -----------------------~~~~~~~L~~rl~~~~i~lPpLR 145 (145)
T 3n70_A 123 -----------------------SNHIIAELYYCFAMTQIACLPLT 145 (145)
T ss_dssp -----------------------HSCCCHHHHHHHHHHEEECCCCC
T ss_pred -----------------------cCCCCHHHHHHhcCCEEeCCCCC
Confidence 14589999999865 47788873
No 83
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.63 E-value=3.3e-15 Score=162.24 Aligned_cols=203 Identities=20% Similarity=0.292 Sum_probs=139.9
Q ss_pred CCCCCcccchHHHHHHHHHhc-------------cCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEe
Q 002012 266 GKLDPVIGRDDEIRRCIQILS-------------RRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLD 332 (982)
Q Consensus 266 ~~l~~liG~~~~i~~l~~~L~-------------~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~ 332 (982)
-+++++.|.++..+.+.+.+. -..+.+++|+||||||||++++++|..+ +..++.++
T Consensus 7 ~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~----------~~~~i~i~ 76 (274)
T 2x8a_A 7 VTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANES----------GLNFISVK 76 (274)
T ss_dssp -----CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHT----------TCEEEEEE
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHc----------CCCEEEEE
Confidence 467888888876666654321 1234569999999999999999999987 66788888
Q ss_pred cccccccccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCC---chhhHHHHHHhhhc----CCCeEEEEec
Q 002012 333 MASLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQS---GAMDASNMLKPMLG----RGELRCIGAT 405 (982)
Q Consensus 333 ~~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~---~~~~~~~~L~~~le----~g~i~vI~at 405 (982)
..++.. .+.|+.+..+..+|+.+.. ..++|+|+||++.+...+... ......+.+...|+ +..+.++++|
T Consensus 77 g~~l~~--~~~~~~~~~i~~vf~~a~~-~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~t 153 (274)
T 2x8a_A 77 GPELLN--MYVGESERAVRQVFQRAKN-SAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAAT 153 (274)
T ss_dssp TTTTCS--STTHHHHHHHHHHHHHHHH-TCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEE
T ss_pred cHHHHh--hhhhHHHHHHHHHHHHHHh-cCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeec
Confidence 777763 4678888889999988754 467899999999876432211 11234455555554 3467888999
Q ss_pred CchhHhhhhhcChHHHh--ccc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccC-hHHHHHHHHHhhhhhccCCCcchh
Q 002012 406 TLNEYRNYIEKDPALER--RFQ-QVFCDQPSVENTISILRGLRERYELHHGVKIS-DSALVSAAVLADRYITERFLPDKA 481 (982)
Q Consensus 406 ~~~~~~~~~~~d~al~r--Rf~-~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~-~~~l~~~~~~s~r~i~~~~~p~~a 481 (982)
|.++ .+|+++.| ||+ .|+++.|+.+++.+||+.+.... ....+. +-.+..++.. ..++++.+.+.
T Consensus 154 n~p~-----~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~---~~~~~~~~~~~~~la~~---~~~~g~sgadl 222 (274)
T 2x8a_A 154 NRPD-----IIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNG---TKPPLDADVNLEAIAGD---LRCDCYTGADL 222 (274)
T ss_dssp SCGG-----GSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTT---BTTBBCTTCCHHHHHTC---SGGGSCCHHHH
T ss_pred CChh-----hCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcc---cCCCCccccCHHHHHHh---hccCCcCHHHH
Confidence 9988 68999999 997 89999999999999998776431 112222 2223333332 22346778999
Q ss_pred hHHHHHHHHHh
Q 002012 482 IDLVDEAAAKL 492 (982)
Q Consensus 482 ~~lld~a~~~~ 492 (982)
..++.+|+..+
T Consensus 223 ~~l~~~a~~~a 233 (274)
T 2x8a_A 223 SALVREASICA 233 (274)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999888653
No 84
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.63 E-value=4.6e-16 Score=184.54 Aligned_cols=202 Identities=15% Similarity=0.198 Sum_probs=145.1
Q ss_pred hhhhhHHHhhcCCCCCcccchHHHHHHHHHhcc-----------------CCCCCcEEeCCCCCcHHHHHHHHHHHhhcC
Q 002012 255 YGNDLTELARSGKLDPVIGRDDEIRRCIQILSR-----------------RTKNNPVIIGEPGVGKTAIAEGLAQRIVRG 317 (982)
Q Consensus 255 ~~~~l~~~~~~~~l~~liG~~~~i~~l~~~L~~-----------------~~~~~iLL~GppGvGKT~la~~la~~l~~~ 317 (982)
-...|+++++|.++++++|+++.++.+.+.+.. ...+++||+||||||||++|+++|+.+
T Consensus 25 ~~~lW~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l--- 101 (516)
T 1sxj_A 25 SDKLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL--- 101 (516)
T ss_dssp -CCCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT---
T ss_pred cCCCcccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc---
Confidence 345699999999999999999999999888764 134689999999999999999999998
Q ss_pred CCCCCCCCCeEEEEecccccccccccccHHHH---------HHHHHHHH----HhcCCCeEEEEccchhhhhCCCCCchh
Q 002012 318 DVPETLQNRKLISLDMASLVAGTCYRGDFEKR---------LKAVLKEV----TKSNGQIILFIDELHTIIGAGNQSGAM 384 (982)
Q Consensus 318 ~~p~~l~~~~v~~l~~~~l~~~~~~~g~~e~~---------l~~l~~~~----~~~~~~~IL~IDEi~~l~~~~~~~~~~ 384 (982)
+..++.++++++.... ..... +..++..+ .....+.||||||+|.+.... .
T Consensus 102 -------~~~~i~in~s~~~~~~----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~-----~ 165 (516)
T 1sxj_A 102 -------GYDILEQNASDVRSKT----LLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGD-----R 165 (516)
T ss_dssp -------TCEEEEECTTSCCCHH----HHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTS-----T
T ss_pred -------CCCEEEEeCCCcchHH----HHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhh-----H
Confidence 7899999987654321 00000 01111111 112456899999999987432 3
Q ss_pred hHHHHHHhhhcCCCeEEEEecCchhHhhhhhcChHHHhccceEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHH
Q 002012 385 DASNMLKPMLGRGELRCIGATTLNEYRNYIEKDPALERRFQQVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSA 464 (982)
Q Consensus 385 ~~~~~L~~~le~g~i~vI~at~~~~~~~~~~~d~al~rRf~~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~ 464 (982)
...+.|..+++..+..+|++++.... ..-+.+.+|+..+.|..|+.+++.++|..++.+ .++.++++++..+
T Consensus 166 ~~l~~L~~~l~~~~~~iIli~~~~~~----~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~----~~~~i~~~~l~~l 237 (516)
T 1sxj_A 166 GGVGQLAQFCRKTSTPLILICNERNL----PKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIR----EKFKLDPNVIDRL 237 (516)
T ss_dssp THHHHHHHHHHHCSSCEEEEESCTTS----STTGGGTTTSEEEECCCCCHHHHHHHHHHHHHH----HTCCCCTTHHHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEEcCCCC----ccchhhHhceEEEEeCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHH
Confidence 34567778887666556665554321 123458888889999999999999999877765 4778999999999
Q ss_pred HHHhhhhhccCCCcchhhHHHHHHH
Q 002012 465 AVLADRYITERFLPDKAIDLVDEAA 489 (982)
Q Consensus 465 ~~~s~r~i~~~~~p~~a~~lld~a~ 489 (982)
+..+.+.+ +.++++++.++
T Consensus 238 a~~s~Gdi------R~~i~~L~~~~ 256 (516)
T 1sxj_A 238 IQTTRGDI------RQVINLLSTIS 256 (516)
T ss_dssp HHHTTTCH------HHHHHHHTHHH
T ss_pred HHHcCCcH------HHHHHHHHHHH
Confidence 98876433 56666665443
No 85
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.62 E-value=4.9e-15 Score=167.51 Aligned_cols=205 Identities=19% Similarity=0.254 Sum_probs=148.3
Q ss_pred hcccccchHHHHHHHHHHHHHhcCCC---CCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEecccccccccc
Q 002012 662 HKRVIGQDIAVKSVADAIRRSRAGLS---DPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSV 738 (982)
Q Consensus 662 ~~~iiGq~~a~~~l~~~i~~~~~g~~---~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~ 738 (982)
+.+|+|++.+++.|.+.+......-. ....+..++||+||||||||++|+++|+.+ +.+++.++|+++...
T Consensus 83 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~---~~~~~~i~~~~l~~~--- 156 (357)
T 3d8b_A 83 WEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS---GATFFSISASSLTSK--- 156 (357)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT---TCEEEEEEGGGGCCS---
T ss_pred HHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc---CCeEEEEehHHhhcc---
Confidence 47799999999999998865321100 011233469999999999999999999987 788999999876432
Q ss_pred ccccCCCCCcccccc--CCchhHHHhhCCCeEEEEccccccC-----------HHHHHHHHHhhhcCceecCCCcEEecc
Q 002012 739 SRLVGAPPGYVGYEE--GGQLTEVVRRRPYSVVLFDEIEKAH-----------QDVFNILLQLLDDGRITDSQGRTVSFT 805 (982)
Q Consensus 739 ~~l~g~~~g~vg~~~--~~~l~~~l~~~~~~Vl~lDEidkl~-----------~~~~~~Ll~~le~g~~~d~~g~~~~~~ 805 (982)
+.|... ...++.......++||||||||.+. ..+++.|+..++..... ...
T Consensus 157 ---------~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~-------~~~ 220 (357)
T 3d8b_A 157 ---------WVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTS-------SED 220 (357)
T ss_dssp ---------STTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC-----------CCC
T ss_pred ---------ccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhccccc-------CCC
Confidence 222111 1234555666778999999999883 24678888888743211 124
Q ss_pred cEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHHHHHH
Q 002012 806 NCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKD 885 (982)
Q Consensus 806 ~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~~~ 885 (982)
+++||+|||.... +.+.+++||+..+.|++++.++..+++...+..
T Consensus 221 ~v~vI~atn~~~~-------------------------------l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~--- 266 (357)
T 3d8b_A 221 RILVVGATNRPQE-------------------------------IDEAARRRLVKRLYIPLPEASARKQIVINLMSK--- 266 (357)
T ss_dssp CEEEEEEESCGGG-------------------------------BCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHT---
T ss_pred CEEEEEecCChhh-------------------------------CCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhh---
Confidence 6899999997432 678899999889999999999999998877653
Q ss_pred HHHhCCCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHH
Q 002012 886 RLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEI 930 (982)
Q Consensus 886 ~~~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~l~~~l 930 (982)
.+ +.+++++++.|+... ..|..+.|+.+++.....++
T Consensus 267 ----~~--~~l~~~~l~~la~~t--~G~s~~dl~~l~~~a~~~~i 303 (357)
T 3d8b_A 267 ----EQ--CCLSEEEIEQIVQQS--DAFSGADMTQLCREASLGPI 303 (357)
T ss_dssp ----SC--BCCCHHHHHHHHHHT--TTCCHHHHHHHHHHHHTHHH
T ss_pred ----cC--CCccHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHHH
Confidence 23 568899999998863 34566888888888665544
No 86
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.62 E-value=4.5e-15 Score=169.98 Aligned_cols=205 Identities=17% Similarity=0.247 Sum_probs=145.1
Q ss_pred hcccccchHHHHHHHHHHHHHhcCC---CCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEecccccccccc
Q 002012 662 HKRVIGQDIAVKSVADAIRRSRAGL---SDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSV 738 (982)
Q Consensus 662 ~~~iiGq~~a~~~l~~~i~~~~~g~---~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~ 738 (982)
+.+|+|++.+++.|...+......- .....+..++||+||||||||++|+++|+.+ +.+|+.++|+++...
T Consensus 114 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~---~~~~~~v~~~~l~~~--- 187 (389)
T 3vfd_A 114 FDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES---NATFFNISAASLTSK--- 187 (389)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT---TCEEEEECSCCC------
T ss_pred hHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh---cCcEEEeeHHHhhcc---
Confidence 4789999999999998885543210 0011233469999999999999999999997 789999999876432
Q ss_pred ccccCCCCCcccccc--CCchhHHHhhCCCeEEEEcccccc-----------CHHHHHHHHHhhhcCceecCCCcEEecc
Q 002012 739 SRLVGAPPGYVGYEE--GGQLTEVVRRRPYSVVLFDEIEKA-----------HQDVFNILLQLLDDGRITDSQGRTVSFT 805 (982)
Q Consensus 739 ~~l~g~~~g~vg~~~--~~~l~~~l~~~~~~Vl~lDEidkl-----------~~~~~~~Ll~~le~g~~~d~~g~~~~~~ 805 (982)
|.|... ...+++.+.....+||||||||.+ ...+++.|+..|+..... ...
T Consensus 188 ---------~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~-------~~~ 251 (389)
T 3vfd_A 188 ---------YVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSA-------GDD 251 (389)
T ss_dssp -------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC------------
T ss_pred ---------ccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhccccc-------CCC
Confidence 222211 123556666777799999999988 355778888888742211 124
Q ss_pred cEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHHHHHH
Q 002012 806 NCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKD 885 (982)
Q Consensus 806 ~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~~~ 885 (982)
+++||+|||.... +++.+++||+..|.|++++.++..+|+...+..
T Consensus 252 ~v~vI~atn~~~~-------------------------------l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~--- 297 (389)
T 3vfd_A 252 RVLVMGATNRPQE-------------------------------LDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCK--- 297 (389)
T ss_dssp CEEEEEEESCGGG-------------------------------CCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTT---
T ss_pred CEEEEEecCCchh-------------------------------cCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHh---
Confidence 6899999997432 788999999888999999999999998876653
Q ss_pred HHHhCCCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHH
Q 002012 886 RLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEI 930 (982)
Q Consensus 886 ~~~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~l~~~l 930 (982)
.+ ..+++++++.|+... ..+..+.|..++......++
T Consensus 298 ----~~--~~l~~~~~~~la~~~--~g~~~~~l~~L~~~a~~~~~ 334 (389)
T 3vfd_A 298 ----QG--SPLTQKELAQLARMT--DGYSGSDLTALAKDAALGPI 334 (389)
T ss_dssp ----SC--CCSCHHHHHHHHHHT--TTCCHHHHHHHHHHHTTHHH
T ss_pred ----cC--CCCCHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHHH
Confidence 23 668899999998863 33555777777766444433
No 87
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.62 E-value=1.3e-15 Score=176.52 Aligned_cols=188 Identities=19% Similarity=0.299 Sum_probs=132.9
Q ss_pred hcccccchHHH---HHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEecccccccccc
Q 002012 662 HKRVIGQDIAV---KSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSV 738 (982)
Q Consensus 662 ~~~iiGq~~a~---~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~ 738 (982)
...++||++++ ..+...+.... . .++||+||||||||++|++|++.+ +.+++.+++......
T Consensus 25 l~~ivGq~~~~~~~~~L~~~i~~~~--------~-~~vLL~GppGtGKTtlAr~ia~~~---~~~f~~l~a~~~~~~--- 89 (447)
T 3pvs_A 25 LAQYIGQQHLLAAGKPLPRAIEAGH--------L-HSMILWGPPGTGKTTLAEVIARYA---NADVERISAVTSGVK--- 89 (447)
T ss_dssp TTTCCSCHHHHSTTSHHHHHHHHTC--------C-CEEEEECSTTSSHHHHHHHHHHHT---TCEEEEEETTTCCHH---
T ss_pred HHHhCCcHHHHhchHHHHHHHHcCC--------C-cEEEEECCCCCcHHHHHHHHHHHh---CCCeEEEEeccCCHH---
Confidence 36799999999 77888777431 1 369999999999999999999997 677888776542110
Q ss_pred ccccCCCCCccccccCCchhHH----HhhCCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEEecC
Q 002012 739 SRLVGAPPGYVGYEEGGQLTEV----VRRRPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSN 814 (982)
Q Consensus 739 ~~l~g~~~g~vg~~~~~~l~~~----l~~~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn 814 (982)
....+... .....++||||||||.++...++.|+..|++|. ++||++|+
T Consensus 90 --------------~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~~-------------v~lI~att 142 (447)
T 3pvs_A 90 --------------EIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT-------------ITFIGATT 142 (447)
T ss_dssp --------------HHHHHHHHHHHHHHTTCCEEEEEETTTCC------CCHHHHHTTS-------------CEEEEEES
T ss_pred --------------HHHHHHHHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcCc-------------eEEEecCC
Confidence 00111111 123457899999999999999999999999753 66777765
Q ss_pred CChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHHHHHHHHHhCCCCc
Q 002012 815 IGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDL 894 (982)
Q Consensus 815 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~~~~~~~~~~~l 894 (982)
.... ..+.+++++|+. ++.|.|++.+++..++...+......+. +..+
T Consensus 143 ~n~~-----------------------------~~l~~aL~sR~~-v~~l~~l~~edi~~il~~~l~~~~~~~~--~~~~ 190 (447)
T 3pvs_A 143 ENPS-----------------------------FELNSALLSRAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYG--GQDI 190 (447)
T ss_dssp SCGG-----------------------------GSSCHHHHTTEE-EEECCCCCHHHHHHHHHHHHHCTTTSST--TSSE
T ss_pred CCcc-----------------------------cccCHHHhCcee-EEeeCCcCHHHHHHHHHHHHHHHhhhhc--cccC
Confidence 4331 127889999995 7889999999999999988875321111 1347
Q ss_pred cCCHHHHHHHHhcCCCCCCCchHHHHHHHHHH
Q 002012 895 HYTKEAVTLLGILGFDPNFGARPVKRVIQQLV 926 (982)
Q Consensus 895 ~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~l 926 (982)
.+++++++.|+.+ |++ ++|.+.+.++..+
T Consensus 191 ~i~~~al~~L~~~-~~G--d~R~lln~Le~a~ 219 (447)
T 3pvs_A 191 VLPDETRRAIAEL-VNG--DARRALNTLEMMA 219 (447)
T ss_dssp ECCHHHHHHHHHH-HCS--CHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH-CCC--CHHHHHHHHHHHH
Confidence 8999999999998 544 4688888888743
No 88
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.61 E-value=2.8e-15 Score=164.74 Aligned_cols=141 Identities=18% Similarity=0.210 Sum_probs=103.0
Q ss_pred CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccccccccccHHHHHHHHHHHHH---hcCCCe
Q 002012 288 RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGTCYRGDFEKRLKAVLKEVT---KSNGQI 364 (982)
Q Consensus 288 ~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~~~~g~~e~~l~~l~~~~~---~~~~~~ 364 (982)
+.+.++||+||||||||++|+++|+.+ +.+++.++++.+.+ .+.|+.+..++.+|..+. ....++
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l----------~~~~i~v~~~~l~~--~~~g~~~~~i~~~f~~a~~~~~~~~~~ 101 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKM----------GINPIMMSAGELES--GNAGEPAKLIRQRYREAAEIIRKGNMC 101 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHH----------TCCCEEEEHHHHHC--C---HHHHHHHHHHHHHHHHHTTSSCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEeHHHhhh--ccCchhHHHHHHHHHHHHHHHhcCCCe
Confidence 345678999999999999999999999 88999999999874 478999999999998773 235678
Q ss_pred EEEEccchhhhhCCCCC-----chhhHHHHHHhhhc---------------CCCeEEEEecCchhHhhhhhcChHHHh--
Q 002012 365 ILFIDELHTIIGAGNQS-----GAMDASNMLKPMLG---------------RGELRCIGATTLNEYRNYIEKDPALER-- 422 (982)
Q Consensus 365 IL~IDEi~~l~~~~~~~-----~~~~~~~~L~~~le---------------~g~i~vI~at~~~~~~~~~~~d~al~r-- 422 (982)
||||||||.+.+..... ....+.+.|+++++ ..++.+|+|||..+ .+|++|+|
T Consensus 102 vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~-----~ld~al~R~~ 176 (293)
T 3t15_A 102 CLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFS-----TLYAPLIRDG 176 (293)
T ss_dssp CEEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCC-----C--CHHHHHH
T ss_pred EEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcc-----cCCHHHhCCC
Confidence 99999999987633211 22356678888874 34689999999987 78999997
Q ss_pred ccceEEecCCCHHHHHHHHHHHHH
Q 002012 423 RFQQVFCDQPSVENTISILRGLRE 446 (982)
Q Consensus 423 Rf~~i~i~~Ps~~e~~~IL~~~~~ 446 (982)
||+.+. ..|+.+++.+|++.+..
T Consensus 177 R~d~~i-~~P~~~~r~~Il~~~~~ 199 (293)
T 3t15_A 177 RMEKFY-WAPTREDRIGVCTGIFR 199 (293)
T ss_dssp HEEEEE-ECCCHHHHHHHHHHHHG
T ss_pred CCceeE-eCcCHHHHHHHHHHhcc
Confidence 886332 36899999999986654
No 89
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.61 E-value=5e-14 Score=190.24 Aligned_cols=123 Identities=15% Similarity=0.200 Sum_probs=92.5
Q ss_pred CCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccccccccccHHHHHHHHHHHHHhcCCCeEEEEc
Q 002012 290 KNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFID 369 (982)
Q Consensus 290 ~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~ID 369 (982)
..+.++.||+|||||++++.+|+.+ |.+++.++|++-... ..+..+|..+... +.++++|
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~l----------g~~~v~~nc~e~ld~--------~~lg~~~~g~~~~--Gaw~~~D 704 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNL----------GRVVVVFNCDDSFDY--------QVLSRLLVGITQI--GAWGCFD 704 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTT----------TCCCEEEETTSSCCH--------HHHHHHHHHHHHH--TCEEEEE
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHh----------CCcEEEEECCCCCCh--------hHhhHHHHHHHhc--CCEeeeh
Confidence 4578899999999999999999999 999999998865532 2345666655543 3599999
Q ss_pred cchhhhhCCCCCchhhHHHHH-------Hhhhc--------C-------CCeEEEEecCchhHhhhhhcChHHHhccceE
Q 002012 370 ELHTIIGAGNQSGAMDASNML-------KPMLG--------R-------GELRCIGATTLNEYRNYIEKDPALERRFQQV 427 (982)
Q Consensus 370 Ei~~l~~~~~~~~~~~~~~~L-------~~~le--------~-------g~i~vI~at~~~~~~~~~~~d~al~rRf~~i 427 (982)
|++++. .++...+ ...+. . ..+.+++|+|+ .|.+..+++++|++||..|
T Consensus 705 E~nr~~--------~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NP-gy~g~~eLP~~Lk~~Fr~v 775 (2695)
T 4akg_A 705 EFNRLD--------EKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNP-GYNGRSELPENLKKSFREF 775 (2695)
T ss_dssp TTTSSC--------HHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECC-CSSSSCCCCHHHHTTEEEE
T ss_pred hhhhcC--------hHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCC-CccCcccccHHHHhheEEE
Confidence 999875 3333333 22221 1 23467788887 5888889999999999999
Q ss_pred EecCCCHHHHHHHH
Q 002012 428 FCDQPSVENTISIL 441 (982)
Q Consensus 428 ~i~~Ps~~e~~~IL 441 (982)
.+..|+.+.+.+|+
T Consensus 776 ~m~~Pd~~~i~ei~ 789 (2695)
T 4akg_A 776 SMKSPQSGTIAEMI 789 (2695)
T ss_dssp ECCCCCHHHHHHHH
T ss_pred EeeCCCHHHHHHHH
Confidence 99999998877775
No 90
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.61 E-value=4.3e-15 Score=165.77 Aligned_cols=189 Identities=17% Similarity=0.228 Sum_probs=143.7
Q ss_pred hcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccccccc
Q 002012 662 HKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRL 741 (982)
Q Consensus 662 ~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l 741 (982)
+.+++|++++++.+...+... ..| ..+||.||||||||++|+++++.+ +.+++.++++..... .+.
T Consensus 25 ~~~ivg~~~~~~~l~~~l~~~-------~~~-~~~L~~G~~G~GKT~la~~la~~l---~~~~~~i~~~~~~~~-~i~-- 90 (324)
T 3u61_B 25 IDECILPAFDKETFKSITSKG-------KIP-HIILHSPSPGTGKTTVAKALCHDV---NADMMFVNGSDCKID-FVR-- 90 (324)
T ss_dssp TTTSCCCHHHHHHHHHHHHTT-------CCC-SEEEECSSTTSSHHHHHHHHHHHT---TEEEEEEETTTCCHH-HHH--
T ss_pred HHHHhCcHHHHHHHHHHHHcC-------CCC-eEEEeeCcCCCCHHHHHHHHHHHh---CCCEEEEcccccCHH-HHH--
Confidence 467999999999998888721 222 247888999999999999999998 678888888764211 110
Q ss_pred cCCCCCccccccCCchhHHHhhC----CCeEEEEccccccC-HHHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCC
Q 002012 742 VGAPPGYVGYEEGGQLTEVVRRR----PYSVVLFDEIEKAH-QDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIG 816 (982)
Q Consensus 742 ~g~~~g~vg~~~~~~l~~~l~~~----~~~Vl~lDEidkl~-~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~ 816 (982)
..+.+..... .++||||||+|.+. .+.++.|++++++.. .+++||+|||..
T Consensus 91 -------------~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~-----------~~~~iI~~~n~~ 146 (324)
T 3u61_B 91 -------------GPLTNFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYS-----------SNCSIIITANNI 146 (324)
T ss_dssp -------------THHHHHHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHG-----------GGCEEEEEESSG
T ss_pred -------------HHHHHHHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCC-----------CCcEEEEEeCCc
Confidence 1122222221 46799999999999 999999999998621 468899999974
Q ss_pred hHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHHHHHHHHHhCCCCccC
Q 002012 817 SHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHY 896 (982)
Q Consensus 817 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~~~~~~~~~~~l~i 896 (982)
.. +.+++.+|| .++.|+|++.+++.+|+...+..+...+...+ +.+
T Consensus 147 ~~-------------------------------l~~~l~sR~-~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~--~~~ 192 (324)
T 3u61_B 147 DG-------------------------------IIKPLQSRC-RVITFGQPTDEDKIEMMKQMIRRLTEICKHEG--IAI 192 (324)
T ss_dssp GG-------------------------------SCTTHHHHS-EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHT--CCB
T ss_pred cc-------------------------------cCHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcC--CCC
Confidence 32 788999999 58999999999999999998888877777777 677
Q ss_pred CH-HHHHHHHhcCCCCCCCchHHHHHHHHH
Q 002012 897 TK-EAVTLLGILGFDPNFGARPVKRVIQQL 925 (982)
Q Consensus 897 ~~-~a~~~L~~~~~~~~~gaR~L~~~i~~~ 925 (982)
++ ++++.|+.. +.+ +.|.+.+.++..
T Consensus 193 ~~~~~~~~l~~~-~~g--d~R~a~~~L~~~ 219 (324)
T 3u61_B 193 ADMKVVAALVKK-NFP--DFRKTIGELDSY 219 (324)
T ss_dssp SCHHHHHHHHHH-TCS--CTTHHHHHHHHH
T ss_pred CcHHHHHHHHHh-CCC--CHHHHHHHHHHH
Confidence 77 999999987 443 347777776663
No 91
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.60 E-value=1.1e-14 Score=160.39 Aligned_cols=206 Identities=18% Similarity=0.256 Sum_probs=145.6
Q ss_pred hcccccchHHHHHHHHHHHHHhcC---CCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEecccccccccc
Q 002012 662 HKRVIGQDIAVKSVADAIRRSRAG---LSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSV 738 (982)
Q Consensus 662 ~~~iiGq~~a~~~l~~~i~~~~~g---~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~ 738 (982)
+.+++|++.+++.+.+.+...... ...-..+..++||+||||||||++|+++|+.+ +.+++.++|+++...
T Consensus 20 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~--- 93 (297)
T 3b9p_A 20 WTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC---SATFLNISAASLTSK--- 93 (297)
T ss_dssp GGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT---TCEEEEEESTTTSSS---
T ss_pred HHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh---CCCeEEeeHHHHhhc---
Confidence 477999999999999888653210 00001233469999999999999999999987 678999999876422
Q ss_pred ccccCCCCCccccc--cCCchhHHHhhCCCeEEEEccccccC-----------HHHHHHHHHhhhcCceecCCCcEEecc
Q 002012 739 SRLVGAPPGYVGYE--EGGQLTEVVRRRPYSVVLFDEIEKAH-----------QDVFNILLQLLDDGRITDSQGRTVSFT 805 (982)
Q Consensus 739 ~~l~g~~~g~vg~~--~~~~l~~~l~~~~~~Vl~lDEidkl~-----------~~~~~~Ll~~le~g~~~d~~g~~~~~~ 805 (982)
+.|.. ....++.......++||||||+|.+. ...++.|+..++...... ...
T Consensus 94 ---------~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~------~~~ 158 (297)
T 3b9p_A 94 ---------YVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNP------DGD 158 (297)
T ss_dssp ---------SCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------------
T ss_pred ---------ccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccC------CCC
Confidence 12211 11234555666778999999999873 457788888887532110 113
Q ss_pred cEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHHHHHH
Q 002012 806 NCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKD 885 (982)
Q Consensus 806 ~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~~~ 885 (982)
+++||++||.... +.+.+++||+..+.|++++.++...|+...+..
T Consensus 159 ~v~vi~~tn~~~~-------------------------------l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~--- 204 (297)
T 3b9p_A 159 RIVVLAATNRPQE-------------------------------LDEAALRRFTKRVYVSLPDEQTRELLLNRLLQK--- 204 (297)
T ss_dssp CEEEEEEESCGGG-------------------------------BCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGG---
T ss_pred cEEEEeecCChhh-------------------------------CCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHh---
Confidence 5889999996532 778899999989999999999998888776653
Q ss_pred HHHhCCCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHH
Q 002012 886 RLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEI 930 (982)
Q Consensus 886 ~~~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~l~~~l 930 (982)
.+ ..+++++++.|+... ..+..+.|+.+++.....++
T Consensus 205 ----~~--~~~~~~~~~~la~~~--~g~~~~~l~~l~~~a~~~a~ 241 (297)
T 3b9p_A 205 ----QG--SPLDTEALRRLAKIT--DGYSGSDLTALAKDAALEPI 241 (297)
T ss_dssp ----GS--CCSCHHHHHHHHHHT--TTCCHHHHHHHHHHHTTHHH
T ss_pred ----cC--CCCCHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHHH
Confidence 22 467899999998863 34556788888877554443
No 92
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.60 E-value=6.7e-15 Score=165.81 Aligned_cols=222 Identities=15% Similarity=0.198 Sum_probs=136.4
Q ss_pred hcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcC----CCCceEEEeccccccccc
Q 002012 662 HKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFN----TENALVRIDMSEYMEKHS 737 (982)
Q Consensus 662 ~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~----~~~~~v~i~~s~~~~~~~ 737 (982)
+..++|++.++..+..+... ...+++||+||||||||++|+++++.+.. .+.+ ++|........
T Consensus 23 f~~i~G~~~~~~~l~~~~~~---------~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~---~~~~~~~~~~~ 90 (350)
T 1g8p_A 23 FSAIVGQEDMKLALLLTAVD---------PGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCP---VSSPNVEMIPD 90 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHC---------GGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCT---TCCSSGGGSCT
T ss_pred chhccChHHHHHHHHHHhhC---------CCCceEEEECCCCccHHHHHHHHHHhCcccccccccc---ccccccccccc
Confidence 46799999977664433321 11224999999999999999999998731 0122 23332211000
Q ss_pred cc------------cccCCCCCc-----cccc-------cC--CchhHHHhhCCCeEEEEccccccCHHHHHHHHHhhhc
Q 002012 738 VS------------RLVGAPPGY-----VGYE-------EG--GQLTEVVRRRPYSVVLFDEIEKAHQDVFNILLQLLDD 791 (982)
Q Consensus 738 ~~------------~l~g~~~g~-----vg~~-------~~--~~l~~~l~~~~~~Vl~lDEidkl~~~~~~~Ll~~le~ 791 (982)
.. .++..+.+. .|.. .+ ....+.+..+.++|||||||+.+++..++.|+++|++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~~~~~Ll~~le~ 170 (350)
T 1g8p_A 91 WATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDHIVDLLLDVAQS 170 (350)
T ss_dssp TCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHHHHHHHHHHHHH
T ss_pred hhhhhccccccCCCcccccCCCcchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCCHHHHHHHHHHHhc
Confidence 00 000001100 1100 00 0001123334578999999999999999999999999
Q ss_pred CceecC-CCcE-EecccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCC-
Q 002012 792 GRITDS-QGRT-VSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLD- 868 (982)
Q Consensus 792 g~~~d~-~g~~-~~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~- 868 (982)
+..... .|.. ....+++||+|+|... ..++++|++||+..+.++|++
T Consensus 171 ~~~~~~~~g~~~~~~~~~~li~~~n~~~------------------------------~~l~~~L~~R~~~~~~l~~~~~ 220 (350)
T 1g8p_A 171 GENVVERDGLSIRHPARFVLVGSGNPEE------------------------------GDLRPQLLDRFGLSVEVLSPRD 220 (350)
T ss_dssp SEEEECCTTCCEEEECCEEEEEEECSCS------------------------------CCCCHHHHTTCSEEEECCCCCS
T ss_pred CceEEEecceEEeeCCceEEEEEeCCCC------------------------------CCCCHHHHhhcceEEEcCCCCc
Confidence 853322 2322 2235899999999632 127899999998779999995
Q ss_pred hhHHHHHHHHHHHHH-----------------HHH---HHhCCCCccCCHHHHHHHHhcCCCCCC-CchHHHHHHHHH
Q 002012 869 SKEISKIVEIQMNRV-----------------KDR---LKQKKIDLHYTKEAVTLLGILGFDPNF-GARPVKRVIQQL 925 (982)
Q Consensus 869 ~~~l~~il~~~l~~~-----------------~~~---~~~~~~~l~i~~~a~~~L~~~~~~~~~-gaR~L~~~i~~~ 925 (982)
.++..+|+...+... .++ .+.....+.++++++++|..+.|..+. +.|.+.++++..
T Consensus 221 ~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a 298 (350)
T 1g8p_A 221 VETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALGSDGLRGELTLLRSA 298 (350)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHH
Confidence 555557776632210 011 111222368999999999998887777 678888887763
No 93
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.60 E-value=7e-15 Score=161.51 Aligned_cols=212 Identities=9% Similarity=0.041 Sum_probs=145.0
Q ss_pred cccchHHHHHHHHHhcc----CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEeccccccc-------
Q 002012 271 VIGRDDEIRRCIQILSR----RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAG------- 339 (982)
Q Consensus 271 liG~~~~i~~l~~~L~~----~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~------- 339 (982)
+.||++++..+...|.. ..+++++|+||||||||++++.+++.+....-...+....++++|+..+.+.
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I 101 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKI 101 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHH
Confidence 78999999988876644 6778899999999999999999999996532111233568889997654421
Q ss_pred ------cc-ccccHHHHHHHHHHHH-HhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhh--hcCCCeEEEEecCchh
Q 002012 340 ------TC-YRGDFEKRLKAVLKEV-TKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPM--LGRGELRCIGATTLNE 409 (982)
Q Consensus 340 ------~~-~~g~~e~~l~~l~~~~-~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~--le~g~i~vI~at~~~~ 409 (982)
.. ..+.....+..+|..+ ...+.++|+||||+|.+. + +++..-|... .+.+++.+|+++|..+
T Consensus 102 ~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~-----q~~L~~l~~~~~~~~s~~~vI~i~n~~d 174 (318)
T 3te6_A 102 WFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--S-----EKILQYFEKWISSKNSKLSIICVGGHNV 174 (318)
T ss_dssp HHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--C-----THHHHHHHHHHHCSSCCEEEEEECCSSC
T ss_pred HHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--c-----chHHHHHHhcccccCCcEEEEEEecCcc
Confidence 10 1233455566777654 223567899999999996 1 3333222222 2467899999988765
Q ss_pred HhhhhhcChHHHhccc--eEEecCCCHHHHHHHHHHHHHHHhhh-------------------------------cCCcc
Q 002012 410 YRNYIEKDPALERRFQ--QVFCDQPSVENTISILRGLRERYELH-------------------------------HGVKI 456 (982)
Q Consensus 410 ~~~~~~~d~al~rRf~--~i~i~~Ps~~e~~~IL~~~~~~~~~~-------------------------------~~v~i 456 (982)
... ..+++++++||. .|.|++++.+|+..||+.-+...... ..+.+
T Consensus 175 ~~~-~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 253 (318)
T 3te6_A 175 TIR-EQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINHKI 253 (318)
T ss_dssp CCH-HHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--------CTTEEEECEEC
T ss_pred cch-hhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccc
Confidence 321 246788899994 78999999999999998766664321 11357
Q ss_pred ChHHHHHHHHHhhhhhccCCCcchhhHHHHHHHHHhh
Q 002012 457 SDSALVSAAVLADRYITERFLPDKAIDLVDEAAAKLK 493 (982)
Q Consensus 457 ~~~~l~~~~~~s~r~i~~~~~p~~a~~lld~a~~~~~ 493 (982)
+++++..++..+..- ..-.++|+++|..|+..+.
T Consensus 254 ~~~ai~~~A~~vA~~---~GD~R~Al~ilr~A~~~ae 287 (318)
T 3te6_A 254 NNKITQLIAKNVANV---SGSTEKAFKICEAAVEISK 287 (318)
T ss_dssp CHHHHHHHHHHHHHH---HCSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhh---CChHHHHHHHHHHHHHHHH
Confidence 999999988853321 1223788888888876554
No 94
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.59 E-value=1.4e-14 Score=156.14 Aligned_cols=201 Identities=21% Similarity=0.266 Sum_probs=131.1
Q ss_pred hcccccchHHHHHHHHHHHHHhcCCCC---CCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEecccccccccc
Q 002012 662 HKRVIGQDIAVKSVADAIRRSRAGLSD---PARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSV 738 (982)
Q Consensus 662 ~~~iiGq~~a~~~l~~~i~~~~~g~~~---~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~ 738 (982)
+++++|++.+++.+.+.+......... ...+..++||+||||||||++|+++|+.+ +.+++.++++++...
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~---~~~~~~~~~~~~~~~--- 78 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA---QVPFLAMAGAEFVEV--- 78 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH---TCCEEEEETTTTSSS---
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCEEEechHHHHhh---
Confidence 578999999999998887654322110 01223459999999999999999999998 678999999886432
Q ss_pred ccccCCCCCcccc--ccCCchhHHHhhCCCeEEEEccccccC------------HHHH---HHHHHhhhcCceecCCCcE
Q 002012 739 SRLVGAPPGYVGY--EEGGQLTEVVRRRPYSVVLFDEIEKAH------------QDVF---NILLQLLDDGRITDSQGRT 801 (982)
Q Consensus 739 ~~l~g~~~g~vg~--~~~~~l~~~l~~~~~~Vl~lDEidkl~------------~~~~---~~Ll~~le~g~~~d~~g~~ 801 (982)
+.|. .....++.......++||||||+|.+. ...+ +.|+..++...
T Consensus 79 ---------~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~-------- 141 (262)
T 2qz4_A 79 ---------IGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMG-------- 141 (262)
T ss_dssp ---------STTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCC--------
T ss_pred ---------ccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcC--------
Confidence 1111 111234445555667999999999983 3333 44444444211
Q ss_pred EecccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHh--ccccccccCCCChhHHHHHHHHH
Q 002012 802 VSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLN--RIDEYIVFQPLDSKEISKIVEIQ 879 (982)
Q Consensus 802 ~~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~--Rid~ii~F~pl~~~~l~~il~~~ 879 (982)
...++++|+|||.... +++++++ ||+..+.|++++.++..+|++..
T Consensus 142 -~~~~~~vi~~tn~~~~-------------------------------ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~ 189 (262)
T 2qz4_A 142 -TTDHVIVLASTNRADI-------------------------------LDGALMRPGRLDRHVFIDLPTLQERREIFEQH 189 (262)
T ss_dssp -TTCCEEEEEEESCGGG-------------------------------GGSGGGSTTSCCEEEECCSCCHHHHHHHHHHH
T ss_pred -CCCCEEEEecCCChhh-------------------------------cCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHH
Confidence 1236899999996532 5667777 99999999999999999999888
Q ss_pred HHHHHHHHHhCCCCccCCHHH-HHHHHhcCCCCCCCchHHHHHHHHHHHH
Q 002012 880 MNRVKDRLKQKKIDLHYTKEA-VTLLGILGFDPNFGARPVKRVIQQLVEN 928 (982)
Q Consensus 880 l~~~~~~~~~~~~~l~i~~~a-~~~L~~~~~~~~~gaR~L~~~i~~~l~~ 928 (982)
+.. .+ +..+.+. .+.|+... ..+..+.|+++++.....
T Consensus 190 ~~~-------~~--~~~~~~~~~~~l~~~~--~g~~~~~l~~l~~~a~~~ 228 (262)
T 2qz4_A 190 LKS-------LK--LTQSSTFYSQRLAELT--PGFSGADIANICNEAALH 228 (262)
T ss_dssp HHH-------TT--CCBTHHHHHHHHHHTC--TTCCHHHHHHHHHHHHTC
T ss_pred HHh-------CC--CCcchhhHHHHHHHHC--CCCCHHHHHHHHHHHHHH
Confidence 775 22 4455543 46676642 334457788877764433
No 95
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.59 E-value=8e-15 Score=161.04 Aligned_cols=163 Identities=12% Similarity=0.159 Sum_probs=104.8
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccccccccCCCCCc
Q 002012 669 DIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRLVGAPPGY 748 (982)
Q Consensus 669 ~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l~g~~~g~ 748 (982)
+..++.+...+.+..........|. .+||+||||||||++|+++|+.+ +.+++.++|+++... |
T Consensus 13 ~~~~~~~~~~~~k~~l~~~~~~~p~-~lLl~GppGtGKT~la~aiA~~l---~~~~i~v~~~~l~~~------------~ 76 (293)
T 3t15_A 13 PAFMDKLVVHITKNFLKLPNIKVPL-ILGIWGGKGQGKSFQCELVFRKM---GINPIMMSAGELESG------------N 76 (293)
T ss_dssp HHHHHHHHHHHHHTTSCCTTCCCCS-EEEEEECTTSCHHHHHHHHHHHH---TCCCEEEEHHHHHCC-------------
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCe-EEEEECCCCCCHHHHHHHHHHHh---CCCEEEEeHHHhhhc------------c
Confidence 3344445555554444444445555 49999999999999999999998 789999999887432 2
Q ss_pred cccccCCchhHHH-------hhCCCeEEEEccccccCH-------------HHHHHHHHhhhcCceecCCC--cEEeccc
Q 002012 749 VGYEEGGQLTEVV-------RRRPYSVVLFDEIEKAHQ-------------DVFNILLQLLDDGRITDSQG--RTVSFTN 806 (982)
Q Consensus 749 vg~~~~~~l~~~l-------~~~~~~Vl~lDEidkl~~-------------~~~~~Ll~~le~g~~~d~~g--~~~~~~~ 806 (982)
+|.... .+.+.+ +...++||||||||++.+ .+++.|+++|+........+ ......+
T Consensus 77 ~g~~~~-~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~ 155 (293)
T 3t15_A 77 AGEPAK-LIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENAR 155 (293)
T ss_dssp --HHHH-HHHHHHHHHHHHHTTSSCCCEEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCC
T ss_pred CchhHH-HHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCC
Confidence 232211 122233 345789999999998865 36799999999665433222 3345678
Q ss_pred EEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHH--hccccccccCCCChhHHHHHHHHHHH
Q 002012 807 CVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFL--NRIDEYIVFQPLDSKEISKIVEIQMN 881 (982)
Q Consensus 807 ~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll--~Rid~ii~F~pl~~~~l~~il~~~l~ 881 (982)
++||+|||.... ++++|+ +||+.+|. .| +.++..+|++..+.
T Consensus 156 v~vI~ttN~~~~-------------------------------ld~al~R~~R~d~~i~-~P-~~~~r~~Il~~~~~ 199 (293)
T 3t15_A 156 VPIIVTGNDFST-------------------------------LYAPLIRDGRMEKFYW-AP-TREDRIGVCTGIFR 199 (293)
T ss_dssp CCEEEECSSCCC---------------------------------CHHHHHHHEEEEEE-CC-CHHHHHHHHHHHHG
T ss_pred cEEEEecCCccc-------------------------------CCHHHhCCCCCceeEe-Cc-CHHHHHHHHHHhcc
Confidence 999999997542 566777 59987664 34 99999999885554
No 96
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.58 E-value=1e-14 Score=165.67 Aligned_cols=218 Identities=20% Similarity=0.280 Sum_probs=138.9
Q ss_pred hcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccccc--
Q 002012 662 HKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVS-- 739 (982)
Q Consensus 662 ~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~-- 739 (982)
+..++|++.++..+...+.....+. .+..++||+||||||||++|+++++.+. ...+++.+++..+.......
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~----~~~~~vLl~GppGtGKT~la~~la~~l~-~~~~~~~~~~~~~~~~~~~~~~ 117 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGK----IAGRAVLIAGQPGTGKTAIAMGMAQALG-PDTPFTAIAGSEIFSLEMSKTE 117 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTC----CTTCEEEEEESTTSSHHHHHHHHHHHHC-SSCCEEEEEGGGGSCSSSCHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCC----CCCCEEEEECCCCCCHHHHHHHHHHHhc-ccCCcccccchhhhhcccchhH
Confidence 4789999999988776666655442 2223699999999999999999999983 34588888877643221000
Q ss_pred -------ccc----------------------------CCCCCccccccCCchhHHH----h----hCC----CeEEEEc
Q 002012 740 -------RLV----------------------------GAPPGYVGYEEGGQLTEVV----R----RRP----YSVVLFD 772 (982)
Q Consensus 740 -------~l~----------------------------g~~~g~vg~~~~~~l~~~l----~----~~~----~~Vl~lD 772 (982)
+.+ +...++.|... ..+.+.+ . ... ++|||||
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~g~~~~~~~vl~ID 196 (368)
T 3uk6_A 118 ALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIK-SEVREQINAKVAEWREEGKAEIIPGVLFID 196 (368)
T ss_dssp HHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------C-HHHHHHHHHHHHHHHHHTC---CBCEEEEE
T ss_pred HHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccH-HHHHHHHHHHHHHhhhhccccccCceEEEh
Confidence 000 01011111100 1111111 1 111 3699999
Q ss_pred cccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcCh
Q 002012 773 EIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRP 852 (982)
Q Consensus 773 Eidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p 852 (982)
|+|.++++.++.|++.+++.. ..+ +|++++.+...+... ... . ...+++
T Consensus 197 Ei~~l~~~~~~~L~~~le~~~-----------~~~-~ii~t~~~~~~i~~t-~~~-~-----------------~~~l~~ 245 (368)
T 3uk6_A 197 EVHMLDIESFSFLNRALESDM-----------APV-LIMATNRGITRIRGT-SYQ-S-----------------PHGIPI 245 (368)
T ss_dssp SGGGSBHHHHHHHHHHTTCTT-----------CCE-EEEEESCSEEECBTS-SCE-E-----------------ETTCCH
T ss_pred hccccChHHHHHHHHHhhCcC-----------CCe-eeeecccceeeeecc-CCC-C-----------------cccCCH
Confidence 999999999999999998742 123 344444321100000 000 0 022788
Q ss_pred HHHhccccccccCCCChhHHHHHHHHHHHHHHHHHHhCCCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHHHHHH
Q 002012 853 EFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVEN 928 (982)
Q Consensus 853 ~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~~~~~~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~l~~ 928 (982)
+|++||. ++.|+|++.+++.+++...+.. .+ +.++++++++|+..++. .+.|.+.++++..+..
T Consensus 246 ~l~sR~~-~i~~~~~~~~e~~~il~~~~~~-------~~--~~~~~~~l~~l~~~~~~--G~~r~~~~ll~~a~~~ 309 (368)
T 3uk6_A 246 DLLDRLL-IVSTTPYSEKDTKQILRIRCEE-------ED--VEMSEDAYTVLTRIGLE--TSLRYAIQLITAASLV 309 (368)
T ss_dssp HHHTTEE-EEEECCCCHHHHHHHHHHHHHH-------TT--CCBCHHHHHHHHHHHHH--SCHHHHHHHHHHHHHH
T ss_pred HHHhhcc-EEEecCCCHHHHHHHHHHHHHH-------cC--CCCCHHHHHHHHHHhcC--CCHHHHHHHHHHHHHH
Confidence 9999996 5899999999999999887664 33 67999999999997653 3458888888875443
No 97
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.58 E-value=6.1e-15 Score=172.00 Aligned_cols=201 Identities=24% Similarity=0.358 Sum_probs=144.0
Q ss_pred hcCCCCCcccchHHHHHHHHHhc---c---------CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEE
Q 002012 264 RSGKLDPVIGRDDEIRRCIQILS---R---------RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISL 331 (982)
Q Consensus 264 ~~~~l~~liG~~~~i~~l~~~L~---~---------~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l 331 (982)
.+-+|++++|.++.+..+.++.. . ..+.+++|+||||||||++|+++|..+ +..++.+
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~----------~~~~i~i 95 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA----------RVPFITA 95 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT----------TCCEEEE
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCEEEE
Confidence 45689999999987666655432 1 124569999999999999999999987 6788999
Q ss_pred ecccccccccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCC---Cch---hhHHHHHHhhhc----CCCeEE
Q 002012 332 DMASLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQ---SGA---MDASNMLKPMLG----RGELRC 401 (982)
Q Consensus 332 ~~~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~---~~~---~~~~~~L~~~le----~g~i~v 401 (982)
+.+++.. .+.|....++..+|+.+.. ..++|+||||||.+....+. .+. ....+.|+..++ +..+.+
T Consensus 96 ~g~~~~~--~~~g~~~~~v~~lfq~a~~-~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viv 172 (499)
T 2dhr_A 96 SGSDFVE--MFVGVGAARVRDLFETAKR-HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVV 172 (499)
T ss_dssp EGGGGTS--SCTTHHHHHHHHHTTTSSS-SSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEE
T ss_pred ehhHHHH--hhhhhHHHHHHHHHHHHHh-cCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEE
Confidence 9888773 4677777778888876543 34679999999998754332 111 233445555554 345788
Q ss_pred EEecCchhHhhhhhcChHHHh--ccc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHH-HHHHHHHhhhhhccCCC
Q 002012 402 IGATTLNEYRNYIEKDPALER--RFQ-QVFCDQPSVENTISILRGLRERYELHHGVKISDSA-LVSAAVLADRYITERFL 477 (982)
Q Consensus 402 I~at~~~~~~~~~~~d~al~r--Rf~-~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~-l~~~~~~s~r~i~~~~~ 477 (982)
|++||.++ .+|+++.| ||. .|.|+.|+.+++.+||+.+.. ++.+++++ +..++..+ ..+.
T Consensus 173 iAatn~p~-----~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~------~~~l~~dv~l~~lA~~t-----~G~~ 236 (499)
T 2dhr_A 173 MAATNRPD-----ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR------GKPLAEDVDLALLAKRT-----PGFV 236 (499)
T ss_dssp EECCSCGG-----GSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTS------SSCCCCSSTTHHHHTTS-----CSCC
T ss_pred EEecCChh-----hcCcccccccccceEEecCCCCHHHHHHHHHHHHh------cCCCChHHHHHHHHHhc-----CCCC
Confidence 99999887 58999999 786 899999999999999975432 23444433 45555443 3445
Q ss_pred cchhhHHHHHHHHHhh
Q 002012 478 PDKAIDLVDEAAAKLK 493 (982)
Q Consensus 478 p~~a~~lld~a~~~~~ 493 (982)
+++...++.+|+..+.
T Consensus 237 gadL~~lv~~Aa~~A~ 252 (499)
T 2dhr_A 237 GADLENLLNEAALLAA 252 (499)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5788888888876654
No 98
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.58 E-value=3.3e-14 Score=157.42 Aligned_cols=200 Identities=20% Similarity=0.254 Sum_probs=136.9
Q ss_pred CcccchHHHHHHHHHhccC---------CCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccccc
Q 002012 270 PVIGRDDEIRRCIQILSRR---------TKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGT 340 (982)
Q Consensus 270 ~liG~~~~i~~l~~~L~~~---------~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~ 340 (982)
.++|++..++.+...+.+. +..+++|+||||||||++|+++++.+... +.+++.++++.+....
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~-------~~~~~~~~~~~~~~~~ 90 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT-------EEAMIRIDMTEYMEKH 90 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSC-------GGGEEEEEGGGCCSTT
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCC-------CcceEEeecccccccc
Confidence 4889999988888877552 23478999999999999999999998543 5578888887664321
Q ss_pred ----------cccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCC-------------
Q 002012 341 ----------CYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRG------------- 397 (982)
Q Consensus 341 ----------~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g------------- 397 (982)
.+.|.... ..+...+.. ..+.||||||++.+. .++++.|+++++.+
T Consensus 91 ~~~~l~g~~~~~~~~~~~--~~~~~~~~~-~~~~vl~lDEi~~l~--------~~~~~~Ll~~le~~~~~~~~~~~~~~~ 159 (311)
T 4fcw_A 91 AVSRLIGAPPGYVGYEEG--GQLTEAVRR-RPYSVILFDAIEKAH--------PDVFNILLQMLDDGRLTDSHGRTVDFR 159 (311)
T ss_dssp HHHHHHCCCTTSTTTTTC--CHHHHHHHH-CSSEEEEEETGGGSC--------HHHHHHHHHHHHHSEEECTTSCEEECT
T ss_pred cHHHhcCCCCcccccccc--chHHHHHHh-CCCeEEEEeChhhcC--------HHHHHHHHHHHhcCEEEcCCCCEEECC
Confidence 01111000 112222332 456799999999985 57788899988754
Q ss_pred CeEEEEecCch---------------hHhhh------hhcChHHHhccc-eEEecCCCHHHHHHHHHHHHHHHhhh----
Q 002012 398 ELRCIGATTLN---------------EYRNY------IEKDPALERRFQ-QVFCDQPSVENTISILRGLRERYELH---- 451 (982)
Q Consensus 398 ~i~vI~at~~~---------------~~~~~------~~~d~al~rRf~-~i~i~~Ps~~e~~~IL~~~~~~~~~~---- 451 (982)
++.+|+|||.. ++... -.++|+|.+||. .+.+.+|+.+++..|++.++.++...
T Consensus 160 ~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~ 239 (311)
T 4fcw_A 160 NTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEK 239 (311)
T ss_dssp TEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTT
T ss_pred CcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 45599999982 11111 157999999995 77888889999999998877766542
Q ss_pred -cCCccChHHHHHHHHHhhhhhccCCCcchhhHHHHHHHH
Q 002012 452 -HGVKISDSALVSAAVLADRYITERFLPDKAIDLVDEAAA 490 (982)
Q Consensus 452 -~~v~i~~~~l~~~~~~s~r~i~~~~~p~~a~~lld~a~~ 490 (982)
..+.++++++..++.++... ....+....+++.++.
T Consensus 240 ~~~~~~~~~~~~~l~~~~~~~---~gn~R~L~~~i~~~~~ 276 (311)
T 4fcw_A 240 RISLELTEAAKDFLAERGYDP---VFGARPLRRVIQRELE 276 (311)
T ss_dssp TCEEEECHHHHHHHHHHSCBT---TTBTTTHHHHHHHHTH
T ss_pred CcEEEeCHHHHHHHHHhCCCc---cCCchhHHHHHHHHHH
Confidence 24678999999998874311 1123444555555443
No 99
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.57 E-value=1.7e-14 Score=168.46 Aligned_cols=237 Identities=16% Similarity=0.214 Sum_probs=152.7
Q ss_pred HHHHHHHHHhhhcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEecc
Q 002012 651 REKLVMLEEVLHKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMS 730 (982)
Q Consensus 651 ~~~l~~l~~~l~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s 730 (982)
.+.+..+.+.+...++||+++++.+..++... .++||+||||||||++|++||..+ +.+.+|..+++.
T Consensus 10 ~~~~~~l~~~l~~~ivGq~~~i~~l~~al~~~-----------~~VLL~GpPGtGKT~LAraLa~~l-~~~~~f~~~~~~ 77 (500)
T 3nbx_X 10 AERISRLSSSLEKGLYERSHAIRLCLLAALSG-----------ESVFLLGPPGIAKSLIARRLKFAF-QNARAFEYLMTR 77 (500)
T ss_dssp HHHHHHHHHHHHTTCSSCHHHHHHHHHHHHHT-----------CEEEEECCSSSSHHHHHHHGGGGB-SSCCEEEEECCT
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC-----------CeeEeecCchHHHHHHHHHHHHHH-hhhhHHHHHHHh
Confidence 34567788889999999999998887776532 259999999999999999999987 334566666664
Q ss_pred ccccccccccccCCCCCccccccCCchhHHHhh--CCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEE
Q 002012 731 EYMEKHSVSRLVGAPPGYVGYEEGGQLTEVVRR--RPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCV 808 (982)
Q Consensus 731 ~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~--~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~i 808 (982)
-. . ...++|...++.... .+.+...... ...+|||||||+++++.+++.|+.+|+++.++. .|........+
T Consensus 78 ~~-t---~~dL~G~~~~~~~~~-~g~~~~~~~g~l~~~~IL~IDEI~r~~~~~q~~LL~~lee~~v~i-~G~~~~~~~~~ 151 (500)
T 3nbx_X 78 FS-T---PEEVFGPLSIQALKD-EGRYERLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERQFRN-GAHVEKIPMRL 151 (500)
T ss_dssp TC-C---HHHHHCCBC-----------CBCCTTSGGGCSEEEEESGGGCCHHHHHHHHHHHHSSEEEC-SSSEEECCCCE
T ss_pred cC-C---HHHhcCcccHHHHhh-chhHHhhhccCCCcceeeeHHhHhhhcHHHHHHHHHHHHHHhccC-CCCcCCcchhh
Confidence 21 1 134555432221100 1111000000 024699999999999999999999999998876 45555554446
Q ss_pred EEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCCh-hHHHHHHHHHHH------
Q 002012 809 VIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDS-KEISKIVEIQMN------ 881 (982)
Q Consensus 809 iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~-~~l~~il~~~l~------ 881 (982)
+|++||...+ ...+.+++++||...+.+++++. ++...|+.....
T Consensus 152 iI~ATN~lpe----------------------------~~~~~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~ 203 (500)
T 3nbx_X 152 LVAASNELPE----------------------------ADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPV 203 (500)
T ss_dssp EEEEESSCCC----------------------------TTCTTHHHHTTCCEEEECCSCCCHHHHHHHHTCCCCTTSCCS
T ss_pred hhhccccCCC----------------------------ccccHHHHHHHHHHHHHHHHhhhhhhHHHHHhcccccCCCCC
Confidence 7888885322 02256799999977788999987 667777764321
Q ss_pred ---------HHHHHHHhCCCCccCCHHHHHHHHhcC-------CCCCCCchHHHHHHHHHHHHHHHHHHHcCC
Q 002012 882 ---------RVKDRLKQKKIDLHYTKEAVTLLGILG-------FDPNFGARPVKRVIQQLVENEIAVAILKGD 938 (982)
Q Consensus 882 ---------~~~~~~~~~~~~l~i~~~a~~~L~~~~-------~~~~~gaR~L~~~i~~~l~~~la~~~l~~~ 938 (982)
.+. .++..-..+.+++++.++++... -....+.|.+..++.. +-|.+.+.+.
T Consensus 204 ~~~~~~~~e~l~-~~~~~~~~v~v~d~v~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~----A~A~A~l~gr 271 (500)
T 3nbx_X 204 PDALQVTDEEYE-RWQKEIGEITLPDHVFELIFMLRQQLDKLPDAPYVSDRRWKKAIRL----LQASAFFSGR 271 (500)
T ss_dssp CTTTSBCHHHHH-HHHHHHTTCBCCHHHHHHHHHHHHHHHHCSSSCCCCHHHHHHHHHH----HHHHHHHTTC
T ss_pred CccceecHHHHH-HHHhcCCcccCchHHHHHHHHHHHHhhcCCCCCccchhHHHHHHHH----HHHHHhhcCC
Confidence 111 11111124779999998887642 1234466776665543 5555667653
No 100
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.57 E-value=6.4e-14 Score=156.88 Aligned_cols=193 Identities=23% Similarity=0.299 Sum_probs=138.7
Q ss_pred hhHHHhhcCCCCCcccchHHHHHHHHHhcc-----CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEe
Q 002012 258 DLTELARSGKLDPVIGRDDEIRRCIQILSR-----RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLD 332 (982)
Q Consensus 258 ~l~~~~~~~~l~~liG~~~~i~~l~~~L~~-----~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~ 332 (982)
.|.+.++|..+++++|++..++.+...+.. ....+++|+||||+||||+++.+|..+ ++.+...+
T Consensus 14 ~~~~~lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l----------~~~~~~~s 83 (334)
T 1in4_A 14 SGVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL----------QTNIHVTS 83 (334)
T ss_dssp ---CTTSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH----------TCCEEEEE
T ss_pred HHHHHcCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh----------CCCEEEEe
Confidence 457888999999999999877776665543 234689999999999999999999998 55555443
Q ss_pred cccccccccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCC---------------
Q 002012 333 MASLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRG--------------- 397 (982)
Q Consensus 333 ~~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g--------------- 397 (982)
...+.. + ..+..++.. ...+.|+||||+|.+.+ .+.+.|...++..
T Consensus 84 g~~~~~-----~---~~l~~~~~~---~~~~~v~~iDE~~~l~~--------~~~e~L~~~~~~~~~~i~~~~~~~~~~i 144 (334)
T 1in4_A 84 GPVLVK-----Q---GDMAAILTS---LERGDVLFIDEIHRLNK--------AVEELLYSAIEDFQIDIMIGKGPSAKSI 144 (334)
T ss_dssp TTTCCS-----H---HHHHHHHHH---CCTTCEEEEETGGGCCH--------HHHHHHHHHHHTSCCCC-----------
T ss_pred chHhcC-----H---HHHHHHHHH---ccCCCEEEEcchhhcCH--------HHHHHHHHHHHhcccceeeccCcccccc
Confidence 222211 1 122233322 23345999999999862 3445555554321
Q ss_pred -----CeEEEEecCchhHhhhhhcChHHHhccc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhh
Q 002012 398 -----ELRCIGATTLNEYRNYIEKDPALERRFQ-QVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRY 471 (982)
Q Consensus 398 -----~i~vI~at~~~~~~~~~~~d~al~rRf~-~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~ 471 (982)
.+.+|++|+... .+++++++||. .+.++.|+.+++.+||+..... .++.++++++..++..+.+
T Consensus 145 ~~~l~~~~li~at~~~~-----~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~----~~~~~~~~~~~~ia~~~~G- 214 (334)
T 1in4_A 145 RIDIQPFTLVGATTRSG-----LLSSPLRSRFGIILELDFYTVKELKEIIKRAASL----MDVEIEDAAAEMIAKRSRG- 214 (334)
T ss_dssp ----CCCEEEEEESCGG-----GSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHH----TTCCBCHHHHHHHHHTSTT-
T ss_pred cccCCCeEEEEecCCcc-----cCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHH----cCCCcCHHHHHHHHHhcCC-
Confidence 367788888876 78999999997 6789999999999999887765 4788999999988887653
Q ss_pred hccCCCcchhhHHHHHHHHHhhh
Q 002012 472 ITERFLPDKAIDLVDEAAAKLKM 494 (982)
Q Consensus 472 i~~~~~p~~a~~lld~a~~~~~~ 494 (982)
.|+.+..+++.+...+..
T Consensus 215 -----~~R~a~~ll~~~~~~a~~ 232 (334)
T 1in4_A 215 -----TPRIAIRLTKRVRDMLTV 232 (334)
T ss_dssp -----CHHHHHHHHHHHHHHHHH
T ss_pred -----ChHHHHHHHHHHHHHHHH
Confidence 468889999888766544
No 101
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.57 E-value=3.8e-14 Score=165.50 Aligned_cols=113 Identities=19% Similarity=0.186 Sum_probs=81.5
Q ss_pred EEEEccchhhhhCCCCCchhhHHHHHHhhhcC--CCeEEEEecCc-------hh-HhhhhhcChHHHhccceEEecCCCH
Q 002012 365 ILFIDELHTIIGAGNQSGAMDASNMLKPMLGR--GELRCIGATTL-------NE-YRNYIEKDPALERRFQQVFCDQPSV 434 (982)
Q Consensus 365 IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~--g~i~vI~at~~-------~~-~~~~~~~d~al~rRf~~i~i~~Ps~ 434 (982)
|+||||+|.|. .++++.|+..++. ..+ +|.+||+ .+ +.....++|.+++||+.+.+.+|+.
T Consensus 298 VliIDEa~~l~--------~~a~~aLlk~lEe~~~~~-~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~ 368 (456)
T 2c9o_A 298 VLFVDEVHMLD--------IECFTYLHRALESSIAPI-VIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTP 368 (456)
T ss_dssp EEEEESGGGCB--------HHHHHHHHHHTTSTTCCE-EEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCH
T ss_pred EEEEechhhcC--------HHHHHHHHHHhhccCCCE-EEEecCCccccccccccccccccCChhHHhhcceeeCCCCCH
Confidence 55566665553 4567788888874 243 4544422 10 1112268999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHh-hhhhccCCCcchhhHHHHHHHHHhhhhc
Q 002012 435 ENTISILRGLRERYELHHGVKISDSALVSAAVLA-DRYITERFLPDKAIDLVDEAAAKLKMEI 496 (982)
Q Consensus 435 ~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s-~r~i~~~~~p~~a~~lld~a~~~~~~~~ 496 (982)
+++.++|+..+.. .++.++++++..++.++ + ..|+.++.+++.|...+....
T Consensus 369 ~e~~~iL~~~~~~----~~~~~~~~~~~~i~~~a~~------g~~r~a~~ll~~a~~~A~~~~ 421 (456)
T 2c9o_A 369 QEMKQIIKIRAQT----EGINISEEALNHLGEIGTK------TTLRYSVQLLTPANLLAKING 421 (456)
T ss_dssp HHHHHHHHHHHHH----HTCCBCHHHHHHHHHHHHH------SCHHHHHHTHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHH----hCCCCCHHHHHHHHHHccC------CCHHHHHHHHHHHHHHHhhcC
Confidence 9999999877764 46789999999999987 4 357899999999876665443
No 102
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.57 E-value=3.1e-14 Score=159.33 Aligned_cols=203 Identities=18% Similarity=0.212 Sum_probs=140.0
Q ss_pred HHHHHHHhhhcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEecccc
Q 002012 653 KLVMLEEVLHKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEY 732 (982)
Q Consensus 653 ~l~~l~~~l~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~ 732 (982)
.+..+...+...++||+++++.+..++... .++||+||||||||++|+++++.+ +.++..++|...
T Consensus 17 ~~~~~~~~~~~~i~g~~~~~~~l~~~l~~~-----------~~vll~G~pGtGKT~la~~la~~~---~~~~~~i~~~~~ 82 (331)
T 2r44_A 17 KIKEVIDEVGKVVVGQKYMINRLLIGICTG-----------GHILLEGVPGLAKTLSVNTLAKTM---DLDFHRIQFTPD 82 (331)
T ss_dssp HHHHHHHHHTTTCCSCHHHHHHHHHHHHHT-----------CCEEEESCCCHHHHHHHHHHHHHT---TCCEEEEECCTT
T ss_pred HHHHHHHHhccceeCcHHHHHHHHHHHHcC-----------CeEEEECCCCCcHHHHHHHHHHHh---CCCeEEEecCCC
Confidence 455677778899999999999888877631 149999999999999999999988 667888887532
Q ss_pred ccccccccccCCC-----CCccccccCCchhHHHhhCCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEec-cc
Q 002012 733 MEKHSVSRLVGAP-----PGYVGYEEGGQLTEVVRRRPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSF-TN 806 (982)
Q Consensus 733 ~~~~~~~~l~g~~-----~g~vg~~~~~~l~~~l~~~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~-~~ 806 (982)
... ..++|.. .+...... +.+ ..+||||||++.+++..++.|++.|+++.++.. |..... .+
T Consensus 83 ~~~---~~l~g~~~~~~~~~~~~~~~-g~l-------~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~-g~~~~~~~~ 150 (331)
T 2r44_A 83 LLP---SDLIGTMIYNQHKGNFEVKK-GPV-------FSNFILADEVNRSPAKVQSALLECMQEKQVTIG-DTTYPLDNP 150 (331)
T ss_dssp CCH---HHHHEEEEEETTTTEEEEEE-CTT-------CSSEEEEETGGGSCHHHHHHHHHHHHHSEEEET-TEEEECCSS
T ss_pred CCh---hhcCCceeecCCCCceEecc-Ccc-------cccEEEEEccccCCHHHHHHHHHHHhcCceeeC-CEEEECCCC
Confidence 211 1122211 11000000 111 136999999999999999999999999987763 444433 56
Q ss_pred EEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHHHH---
Q 002012 807 CVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRV--- 883 (982)
Q Consensus 807 ~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~--- 883 (982)
+++|+|+|+... .+. ..++++|++||+..+.|.+++.++..+|+...+...
T Consensus 151 ~~viat~np~~~--------~~~------------------~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~ 204 (331)
T 2r44_A 151 FLVLATQNPVEQ--------EGT------------------YPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNMNFNY 204 (331)
T ss_dssp CEEEEEECTTCC--------SCC------------------CCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCTTCCC
T ss_pred EEEEEecCCCcc--------cCc------------------ccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccccCcch
Confidence 788888885321 000 127899999997779999999999999998765420
Q ss_pred ----------HHHHHhCCCCccCCHHHHHHHHhc
Q 002012 884 ----------KDRLKQKKIDLHYTKEAVTLLGIL 907 (982)
Q Consensus 884 ----------~~~~~~~~~~l~i~~~a~~~L~~~ 907 (982)
...++.....+.++++++++++..
T Consensus 205 ~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~i~~~ 238 (331)
T 2r44_A 205 QVQKIVSKNDVLEIRNEINKVTISESLEKYIIEL 238 (331)
T ss_dssp CCCCCSCHHHHHHHHHHHHTCBCCHHHHHHHHHH
T ss_pred hccccCCHHHHHHHHHHhccCCCCHHHHHHHHHH
Confidence 001111112477899999988763
No 103
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.57 E-value=3.2e-14 Score=152.89 Aligned_cols=201 Identities=24% Similarity=0.338 Sum_probs=137.0
Q ss_pred hcCCCCCcccchHHHHHHHHHhcc------------CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEE
Q 002012 264 RSGKLDPVIGRDDEIRRCIQILSR------------RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISL 331 (982)
Q Consensus 264 ~~~~l~~liG~~~~i~~l~~~L~~------------~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l 331 (982)
++-+|++++|.++....+.++... ..+.+++|+||||||||+++++++..+ +..++.+
T Consensus 11 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~----------~~~~i~~ 80 (254)
T 1ixz_A 11 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA----------RVPFITA 80 (254)
T ss_dssp CSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHT----------TCCEEEE
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHh----------CCCEEEe
Confidence 345788899998765555443211 124468999999999999999999987 5677888
Q ss_pred ecccccccccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCC---ch---hhHHHHHHhhhcC----CCeEE
Q 002012 332 DMASLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQS---GA---MDASNMLKPMLGR----GELRC 401 (982)
Q Consensus 332 ~~~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~---~~---~~~~~~L~~~le~----g~i~v 401 (982)
+...+.. .+.+.....+..+|+.+.. ..+.++|+||+|.+....... .. ....+.+...++. ..+.+
T Consensus 81 ~~~~~~~--~~~~~~~~~i~~~~~~~~~-~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~ 157 (254)
T 1ixz_A 81 SGSDFVE--MFVGVGAARVRDLFETAKR-HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVV 157 (254)
T ss_dssp EHHHHHH--SCTTHHHHHHHHHHHHHTT-SSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEE
T ss_pred eHHHHHH--HHhhHHHHHHHHHHHHHHh-cCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEE
Confidence 7666553 2456666777788877653 356799999999987543211 11 2233444444442 34677
Q ss_pred EEecCchhHhhhhhcChHHHh--ccc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHH-HHHHHHHhhhhhccCCC
Q 002012 402 IGATTLNEYRNYIEKDPALER--RFQ-QVFCDQPSVENTISILRGLRERYELHHGVKISDSA-LVSAAVLADRYITERFL 477 (982)
Q Consensus 402 I~at~~~~~~~~~~~d~al~r--Rf~-~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~-l~~~~~~s~r~i~~~~~ 477 (982)
+++|+.++ .+|+++.| ||. .+.++.|+.+++.+||+.+... ..++++. +..++..+.+ +.
T Consensus 158 ~a~t~~p~-----~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~------~~~~~~~~~~~la~~~~G-----~~ 221 (254)
T 1ixz_A 158 MAATNRPD-----ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARG------KPLAEDVDLALLAKRTPG-----FV 221 (254)
T ss_dssp EEEESCGG-----GSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTT------SCBCTTCCHHHHHHTCTT-----CC
T ss_pred EEccCCch-----hCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcC------CCCCcccCHHHHHHHcCC-----CC
Confidence 88888887 58999999 786 8899999999999999865432 3344333 5566665443 44
Q ss_pred cchhhHHHHHHHHHhh
Q 002012 478 PDKAIDLVDEAAAKLK 493 (982)
Q Consensus 478 p~~a~~lld~a~~~~~ 493 (982)
+.+...++.+|...+.
T Consensus 222 ~~dl~~~~~~a~~~a~ 237 (254)
T 1ixz_A 222 GADLENLLNEAALLAA 237 (254)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5778888888876554
No 104
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.56 E-value=2.8e-14 Score=153.65 Aligned_cols=202 Identities=21% Similarity=0.310 Sum_probs=135.0
Q ss_pred hcccccchHHHHHHHHHHHHHhcCC--C-CCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEecccccccccc
Q 002012 662 HKRVIGQDIAVKSVADAIRRSRAGL--S-DPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSV 738 (982)
Q Consensus 662 ~~~iiGq~~a~~~l~~~i~~~~~g~--~-~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~ 738 (982)
+++++|++.+++.+...+....... . ....+..+++|+||||||||++|++++..+ +.+++.++++++...
T Consensus 11 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~---~~~~~~i~~~~~~~~--- 84 (257)
T 1lv7_A 11 FADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA---KVPFFTISGSDFVEM--- 84 (257)
T ss_dssp GGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH---TCCEEEECSCSSTTS---
T ss_pred HHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc---CCCEEEEeHHHHHHH---
Confidence 4789999999999988776532210 0 001122359999999999999999999988 678999998876432
Q ss_pred ccccCCCCCccccccCCchhHHHhhCCCeEEEEccccccCH--------------HHHHHHHHhhhcCceecCCCcEEec
Q 002012 739 SRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEIEKAHQ--------------DVFNILLQLLDDGRITDSQGRTVSF 804 (982)
Q Consensus 739 ~~l~g~~~g~vg~~~~~~l~~~l~~~~~~Vl~lDEidkl~~--------------~~~~~Ll~~le~g~~~d~~g~~~~~ 804 (982)
++|... ...+.+++......++|+||||+|.+.+ ..++.++..++.-. ..
T Consensus 85 --~~~~~~-----~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~---------~~ 148 (257)
T 1lv7_A 85 --FVGVGA-----SRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFE---------GN 148 (257)
T ss_dssp --CCCCCH-----HHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCC---------SS
T ss_pred --hhhhhH-----HHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcc---------cC
Confidence 122110 1112344455555678999999988753 46677777776421 12
Q ss_pred ccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHh--ccccccccCCCChhHHHHHHHHHHHH
Q 002012 805 TNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLN--RIDEYIVFQPLDSKEISKIVEIQMNR 882 (982)
Q Consensus 805 ~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~--Rid~ii~F~pl~~~~l~~il~~~l~~ 882 (982)
.++++|+|||.... +++.+++ ||+..+.|++++.++..+|++..++.
T Consensus 149 ~~~~vI~~tn~~~~-------------------------------l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~ 197 (257)
T 1lv7_A 149 EGIIVIAATNRPDV-------------------------------LDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRR 197 (257)
T ss_dssp SCEEEEEEESCTTT-------------------------------SCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTT
T ss_pred CCEEEEEeeCCchh-------------------------------CCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhc
Confidence 46899999997532 5666665 99889999999999998888766542
Q ss_pred HHHHHHhCCCCccCCHHH-HHHHHhcCCCCCCCchHHHHHHHHHHHHH
Q 002012 883 VKDRLKQKKIDLHYTKEA-VTLLGILGFDPNFGARPVKRVIQQLVENE 929 (982)
Q Consensus 883 ~~~~~~~~~~~l~i~~~a-~~~L~~~~~~~~~gaR~L~~~i~~~l~~~ 929 (982)
+.+++++ ...++.. |+ .|+.|+|+++++..+..+
T Consensus 198 -----------~~l~~~~~~~~la~~-~~-G~~~~dl~~l~~~a~~~a 232 (257)
T 1lv7_A 198 -----------VPLAPDIDAAIIARG-TP-GFSGADLANLVNEAALFA 232 (257)
T ss_dssp -----------SCBCTTCCHHHHHHT-CT-TCCHHHHHHHHHHHHHHH
T ss_pred -----------CCCCccccHHHHHHH-cC-CCCHHHHHHHHHHHHHHH
Confidence 1233333 3445543 43 467899999998855543
No 105
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.56 E-value=3.6e-14 Score=153.49 Aligned_cols=185 Identities=20% Similarity=0.179 Sum_probs=118.3
Q ss_pred CCCCcccchHHHHHHHHHhcc--CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccccc----
Q 002012 267 KLDPVIGRDDEIRRCIQILSR--RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGT---- 340 (982)
Q Consensus 267 ~l~~liG~~~~i~~l~~~L~~--~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~---- 340 (982)
+|++++|++..++.+++.+.+ ....+++|+||||||||++|+++++.+... +.+++.++++.+....
T Consensus 4 ~f~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~-------~~~~~~v~~~~~~~~~~~~~ 76 (265)
T 2bjv_A 4 YKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRW-------QGPFISLNCAALNENLLDSE 76 (265)
T ss_dssp ------CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTT-------TSCEEEEEGGGSCHHHHHHH
T ss_pred ccccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCcc-------CCCeEEEecCCCChhHHHHH
Confidence 578899999999988876543 456789999999999999999999876322 5689999988764210
Q ss_pred ---cccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCC-------------CeEEEEe
Q 002012 341 ---CYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRG-------------ELRCIGA 404 (982)
Q Consensus 341 ---~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g-------------~i~vI~a 404 (982)
...|.+..........+... .+.+|||||++.+. .++++.|+.+++.+ ++++|++
T Consensus 77 l~g~~~~~~~g~~~~~~~~l~~a-~~~~l~lDEi~~l~--------~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~a 147 (265)
T 2bjv_A 77 LFGHEAGAFTGAQKRHPGRFERA-DGGTLFLDELATAP--------MMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCA 147 (265)
T ss_dssp HHCCC---------CCCCHHHHT-TTSEEEEESGGGSC--------HHHHHHHHHHHHHCEECCCCC--CEECCCEEEEE
T ss_pred hcCCcccccccccccccchhhhc-CCcEEEEechHhcC--------HHHHHHHHHHHHhCCeecCCCcccccCCeEEEEe
Confidence 00011111000000011112 23599999999986 45677788888753 5789999
Q ss_pred cCchhHhh--hhhcChHHHhccceEEecCCCH----HHHHHHHHHHHHHHhhhcCC----ccChHHHHHHHHH
Q 002012 405 TTLNEYRN--YIEKDPALERRFQQVFCDQPSV----ENTISILRGLRERYELHHGV----KISDSALVSAAVL 467 (982)
Q Consensus 405 t~~~~~~~--~~~~d~al~rRf~~i~i~~Ps~----~e~~~IL~~~~~~~~~~~~v----~i~~~~l~~~~~~ 467 (982)
||.+.... .-.+++.|.+||..+.+..|+. +++..+++.+..++...++. .++++++..+..+
T Consensus 148 tn~~~~~~~~~~~~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~L~~~ 220 (265)
T 2bjv_A 148 TNADLPAMVNEGTFRADLLDALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNY 220 (265)
T ss_dssp ESSCHHHHHHHTSSCHHHHHHHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHHHHHS
T ss_pred cCcCHHHHHHcCCccHHHHHhhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHHHHhC
Confidence 99854221 1236799999997666666653 45666666666666554543 6899999888765
No 106
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.56 E-value=3.5e-14 Score=155.26 Aligned_cols=203 Identities=20% Similarity=0.293 Sum_probs=135.4
Q ss_pred hcccccchHHHHHHHHHHHHHhcCCC----CCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccc
Q 002012 662 HKRVIGQDIAVKSVADAIRRSRAGLS----DPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHS 737 (982)
Q Consensus 662 ~~~iiGq~~a~~~l~~~i~~~~~g~~----~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~ 737 (982)
+.+++|++.+++.|.+.+........ ....+..++||+||||||||++|+++|+.+ +.+++.++++++...
T Consensus 16 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~---~~~~~~v~~~~~~~~-- 90 (285)
T 3h4m_A 16 YEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET---NATFIRVVGSELVKK-- 90 (285)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT---TCEEEEEEGGGGCCC--
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEehHHHHHh--
Confidence 47799999999999888754311100 001222359999999999999999999998 788999998776432
Q ss_pred cccccCCCCCcccccc--CCchhHHHhhCCCeEEEEcccccc-----------CHHHHHHHHHhhhcCceecCCCcEEec
Q 002012 738 VSRLVGAPPGYVGYEE--GGQLTEVVRRRPYSVVLFDEIEKA-----------HQDVFNILLQLLDDGRITDSQGRTVSF 804 (982)
Q Consensus 738 ~~~l~g~~~g~vg~~~--~~~l~~~l~~~~~~Vl~lDEidkl-----------~~~~~~~Ll~~le~g~~~d~~g~~~~~ 804 (982)
+.|... ...++..+....++||||||+|.+ ....+..|+.+++...-... .
T Consensus 91 ----------~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~------~ 154 (285)
T 3h4m_A 91 ----------FIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDA------R 154 (285)
T ss_dssp ----------STTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCS------S
T ss_pred ----------ccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCC------C
Confidence 222111 123455666677799999999998 55677777777654110001 1
Q ss_pred ccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHh--ccccccccCCCChhHHHHHHHHHHHH
Q 002012 805 TNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLN--RIDEYIVFQPLDSKEISKIVEIQMNR 882 (982)
Q Consensus 805 ~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~--Rid~ii~F~pl~~~~l~~il~~~l~~ 882 (982)
.+++||+|||.... +++.+++ ||+.++.|++++.++..+|+...+..
T Consensus 155 ~~~~vI~ttn~~~~-------------------------------l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~ 203 (285)
T 3h4m_A 155 GDVKIIGATNRPDI-------------------------------LDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRK 203 (285)
T ss_dssp SSEEEEEECSCGGG-------------------------------BCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTT
T ss_pred CCEEEEEeCCCchh-------------------------------cCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhc
Confidence 36899999996532 6778887 99989999999999999999766543
Q ss_pred HHHHHHhCCCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHHHHHH
Q 002012 883 VKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVEN 928 (982)
Q Consensus 883 ~~~~~~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~l~~ 928 (982)
.+.....+ ++.|+.. ...+..+.++.++......
T Consensus 204 -------~~~~~~~~---~~~l~~~--~~g~~~~~i~~l~~~a~~~ 237 (285)
T 3h4m_A 204 -------MNLAEDVN---LEEIAKM--TEGCVGAELKAICTEAGMN 237 (285)
T ss_dssp -------SCBCTTCC---HHHHHHH--CTTCCHHHHHHHHHHHHHH
T ss_pred -------CCCCCcCC---HHHHHHH--cCCCCHHHHHHHHHHHHHH
Confidence 22211222 3445543 2234557787777764433
No 107
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.55 E-value=1.2e-13 Score=157.32 Aligned_cols=215 Identities=19% Similarity=0.209 Sum_probs=146.7
Q ss_pred CCCcccchHHHHHHHHHhcc----CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccccc---
Q 002012 268 LDPVIGRDDEIRRCIQILSR----RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGT--- 340 (982)
Q Consensus 268 l~~liG~~~~i~~l~~~L~~----~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~--- 340 (982)
.+.++|++++++.+...+.+ ....+++|+||||||||++++.+++.+.... +....+..++.+++.......
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~ 96 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARA-SSLGVLVKPIYVNARHRETPYRVA 96 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHH-HHHTCCEEEEEEETTTSCSHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHH-hccCCCeEEEEEECCcCCCHHHHH
Confidence 36799999999999998743 4567899999999999999999999874310 000015678888876533210
Q ss_pred -----------ccccc-HHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhc----CCCeEEEEe
Q 002012 341 -----------CYRGD-FEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLG----RGELRCIGA 404 (982)
Q Consensus 341 -----------~~~g~-~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le----~g~i~vI~a 404 (982)
...|. ....+..++..+...+.++||||||+|.+.... ...++...+...++ ...+.+|++
T Consensus 97 ~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~---~~~~~l~~l~~~~~~~~~~~~~~~I~~ 173 (387)
T 2v1u_A 97 SAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP---GGQDLLYRITRINQELGDRVWVSLVGI 173 (387)
T ss_dssp HHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST---THHHHHHHHHHGGGCC-----CEEEEE
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC---CCChHHHhHhhchhhcCCCceEEEEEE
Confidence 01122 223344444444444557899999999997432 12344444444444 568899999
Q ss_pred cCchhHhhhhhcChHHHhcc--ceEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCCcchhh
Q 002012 405 TTLNEYRNYIEKDPALERRF--QQVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLPDKAI 482 (982)
Q Consensus 405 t~~~~~~~~~~~d~al~rRf--~~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~p~~a~ 482 (982)
||..++.. .+++.+.+|| ..+.+++|+.+++..|++...... ..+..++++++..++..+.+. ...|..+.
T Consensus 174 t~~~~~~~--~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~--~~~~~~~~~~~~~l~~~~~~~---~G~~r~~~ 246 (387)
T 2v1u_A 174 TNSLGFVE--NLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEA--FNPGVLDPDVVPLCAALAARE---HGDARRAL 246 (387)
T ss_dssp CSCSTTSS--SSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHH--BCTTTBCSSHHHHHHHHHHSS---SCCHHHHH
T ss_pred ECCCchHh--hhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhh--ccCCCCCHHHHHHHHHHHHHh---ccCHHHHH
Confidence 99885322 5699999999 478999999999999998776531 135678999999999987721 23467888
Q ss_pred HHHHHHHHHhh
Q 002012 483 DLVDEAAAKLK 493 (982)
Q Consensus 483 ~lld~a~~~~~ 493 (982)
+++..+...+.
T Consensus 247 ~~l~~a~~~a~ 257 (387)
T 2v1u_A 247 DLLRVAGEIAE 257 (387)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888876544
No 108
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.55 E-value=5.6e-14 Score=159.32 Aligned_cols=207 Identities=22% Similarity=0.270 Sum_probs=138.3
Q ss_pred cccchHHHHHHHHHhc-------------c--CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEeccc
Q 002012 271 VIGRDDEIRRCIQILS-------------R--RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMAS 335 (982)
Q Consensus 271 liG~~~~i~~l~~~L~-------------~--~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~ 335 (982)
++|++..++.+...+. + ....++||+||||||||++|+++|+.+ +.+++.++++.
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~----------~~~~~~~~~~~ 86 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL----------DVPFTMADATT 86 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT----------TCCEEEEEHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc----------CCCEEEechHH
Confidence 7999999988888772 1 256789999999999999999999998 78999999987
Q ss_pred ccccccccccH-HHHHHHHHHHH----HhcCCCeEEEEccchhhhhCCCCCc------hhhHHHHHHhhhcCC-------
Q 002012 336 LVAGTCYRGDF-EKRLKAVLKEV----TKSNGQIILFIDELHTIIGAGNQSG------AMDASNMLKPMLGRG------- 397 (982)
Q Consensus 336 l~~~~~~~g~~-e~~l~~l~~~~----~~~~~~~IL~IDEi~~l~~~~~~~~------~~~~~~~L~~~le~g------- 397 (982)
+... .|.|.. ...+..++... .. ..++||||||++.+........ ...+++.|+++|+..
T Consensus 87 l~~~-~~~g~~~~~~~~~~~~~~~~~~~~-~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~ 164 (363)
T 3hws_A 87 LTEA-GYVGEDVENIIQKLLQKCDYDVQK-AQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQ 164 (363)
T ss_dssp HTTC-HHHHHHHTHHHHHHHHHTTTCHHH-HHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC-------
T ss_pred hccc-ccccccHHHHHHHHHHHhhhhHHh-cCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCc
Confidence 7632 245543 44455555543 21 2345999999999986543221 123788899988821
Q ss_pred ----------------CeEEEEecCchhHhhh----------------------------------------hhcChHHH
Q 002012 398 ----------------ELRCIGATTLNEYRNY----------------------------------------IEKDPALE 421 (982)
Q Consensus 398 ----------------~i~vI~at~~~~~~~~----------------------------------------~~~d~al~ 421 (982)
++.+|++++...+.+. ..+.|+|.
T Consensus 165 ~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~ 244 (363)
T 3hws_A 165 GGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFI 244 (363)
T ss_dssp ---------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHH
T ss_pred cccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHh
Confidence 2244555554322111 11689999
Q ss_pred hccc-eEEecCCCHHHHHHHHHH----HHHHHhhh-----cCCccChHHHHHHHHHhhhhhccCCCcchhhHHHHHHHHH
Q 002012 422 RRFQ-QVFCDQPSVENTISILRG----LRERYELH-----HGVKISDSALVSAAVLADRYITERFLPDKAIDLVDEAAAK 491 (982)
Q Consensus 422 rRf~-~i~i~~Ps~~e~~~IL~~----~~~~~~~~-----~~v~i~~~~l~~~~~~s~r~i~~~~~p~~a~~lld~a~~~ 491 (982)
+||. .+.+.+|+.+++..|+.. +..+|... ..+.++++++..++..+..+-. -.+....+++.++..
T Consensus 245 ~R~~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~---gaR~L~~~ie~~~~~ 321 (363)
T 3hws_A 245 GRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKT---GARGLRSIVEAALLD 321 (363)
T ss_dssp TTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTC---TTTTHHHHHHHHHHH
T ss_pred cccCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCcc---CchHHHHHHHHHHHH
Confidence 9998 455778899999999876 66665432 2356899999999876543211 123445555555544
Q ss_pred h
Q 002012 492 L 492 (982)
Q Consensus 492 ~ 492 (982)
.
T Consensus 322 ~ 322 (363)
T 3hws_A 322 T 322 (363)
T ss_dssp H
T ss_pred H
Confidence 3
No 109
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.55 E-value=1e-13 Score=144.75 Aligned_cols=185 Identities=21% Similarity=0.350 Sum_probs=132.4
Q ss_pred hcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCC--CCceEEEeccccccccccc
Q 002012 662 HKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNT--ENALVRIDMSEYMEKHSVS 739 (982)
Q Consensus 662 ~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~--~~~~v~i~~s~~~~~~~~~ 739 (982)
+..++|++.+++.+...+... + ..+++|+||+|||||++|+.+++.+... ...++.++++.........
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~--------~-~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (226)
T 2chg_A 16 LDEVVGQDEVIQRLKGYVERK--------N-IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVR 86 (226)
T ss_dssp GGGCCSCHHHHHHHHHHHHTT--------C-CCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHH
T ss_pred HHHHcCcHHHHHHHHHHHhCC--------C-CCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHH
Confidence 467899999999998887632 1 1249999999999999999999987432 2346666665432111100
Q ss_pred cccCCCCCccccccCCchhHHHh-----hCCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEEecC
Q 002012 740 RLVGAPPGYVGYEEGGQLTEVVR-----RRPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSN 814 (982)
Q Consensus 740 ~l~g~~~g~vg~~~~~~l~~~l~-----~~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn 814 (982)
..+..... .....||||||+|.+++..++.|+++++... .++++|+|+|
T Consensus 87 ---------------~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~-----------~~~~~i~~~~ 140 (226)
T 2chg_A 87 ---------------HKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYS-----------KSCRFILSCN 140 (226)
T ss_dssp ---------------HHHHHHHTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTT-----------TTEEEEEEES
T ss_pred ---------------HHHHHHhcccCCCccCceEEEEeChhhcCHHHHHHHHHHHHhcC-----------CCCeEEEEeC
Confidence 00111111 2456799999999999999999999998631 3578899988
Q ss_pred CChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHHHHHHHHHhCCCCc
Q 002012 815 IGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDL 894 (982)
Q Consensus 815 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~~~~~~~~~~~l 894 (982)
.... +.+.+.+|+. .+.|+|++.+++.+++...+.. .+ +
T Consensus 141 ~~~~-------------------------------~~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~-------~~--~ 179 (226)
T 2chg_A 141 YVSR-------------------------------IIEPIQSRCA-VFRFKPVPKEAMKKRLLEICEK-------EG--V 179 (226)
T ss_dssp CGGG-------------------------------SCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHH-------HT--C
T ss_pred Chhh-------------------------------cCHHHHHhCc-eeecCCCCHHHHHHHHHHHHHH-------cC--C
Confidence 5421 6788999996 8999999999999988876654 23 4
Q ss_pred cCCHHHHHHHHhcCCCCCCCchHHHHHHHHH
Q 002012 895 HYTKEAVTLLGILGFDPNFGARPVKRVIQQL 925 (982)
Q Consensus 895 ~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~ 925 (982)
.+++++++.|... +.+ +.|.+.+.++..
T Consensus 180 ~~~~~~~~~l~~~-~~g--~~r~l~~~l~~~ 207 (226)
T 2chg_A 180 KITEDGLEALIYI-SGG--DFRKAINALQGA 207 (226)
T ss_dssp CBCHHHHHHHHHH-HTT--CHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH-cCC--CHHHHHHHHHHH
Confidence 5899999998875 343 346777777664
No 110
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.55 E-value=1.1e-13 Score=157.60 Aligned_cols=207 Identities=22% Similarity=0.282 Sum_probs=133.6
Q ss_pred CcccchHHHHHHHHHhc------------------------------cCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCC
Q 002012 270 PVIGRDDEIRRCIQILS------------------------------RRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDV 319 (982)
Q Consensus 270 ~liG~~~~i~~l~~~L~------------------------------~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~ 319 (982)
.++|+++.++.+...+. .....+++|+||||||||++|+++|+.+
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l----- 96 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHL----- 96 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHT-----
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHh-----
Confidence 48999988888777662 1246789999999999999999999988
Q ss_pred CCCCCCCeEEEEecccccccccccccH-HHHHHHHHHHH----HhcCCCeEEEEccchhhhhCCCC------CchhhHHH
Q 002012 320 PETLQNRKLISLDMASLVAGTCYRGDF-EKRLKAVLKEV----TKSNGQIILFIDELHTIIGAGNQ------SGAMDASN 388 (982)
Q Consensus 320 p~~l~~~~v~~l~~~~l~~~~~~~g~~-e~~l~~l~~~~----~~~~~~~IL~IDEi~~l~~~~~~------~~~~~~~~ 388 (982)
+.+++.++++.+... .+.|.. ...+..++... .. ..+.||||||++.+...+.. .....+++
T Consensus 97 -----~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~-~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~ 169 (376)
T 1um8_A 97 -----DIPIAISDATSLTEA-GYVGEDVENILTRLLQASDWNVQK-AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQ 169 (376)
T ss_dssp -----TCCEEEEEGGGCC---------CTHHHHHHHHHTTTCHHH-HTTSEEEEETGGGC--------------CHHHHH
T ss_pred -----CCCEEEecchhhhhc-CcCCccHHHHHHHHHhhccchhhh-cCCeEEEEcCHHHHhhhcCCCceecccchHHHHH
Confidence 788999998876532 244432 33344444322 12 23569999999999765221 11123778
Q ss_pred HHHhhhcCC-----------------------CeEEEEecCchhHhh---------------------------------
Q 002012 389 MLKPMLGRG-----------------------ELRCIGATTLNEYRN--------------------------------- 412 (982)
Q Consensus 389 ~L~~~le~g-----------------------~i~vI~at~~~~~~~--------------------------------- 412 (982)
.|+.+++.+ ++.+|+++|......
T Consensus 170 ~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 249 (376)
T 1um8_A 170 ALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTH 249 (376)
T ss_dssp HHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHH
T ss_pred HHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHH
Confidence 899888743 347788776321110
Q ss_pred ---hhhcChHHHhccc-eEEecCCCHHHHHHHHH----HHHHHHhhh-----cCCccChHHHHHHHHHhhhhhccCCCcc
Q 002012 413 ---YIEKDPALERRFQ-QVFCDQPSVENTISILR----GLRERYELH-----HGVKISDSALVSAAVLADRYITERFLPD 479 (982)
Q Consensus 413 ---~~~~d~al~rRf~-~i~i~~Ps~~e~~~IL~----~~~~~~~~~-----~~v~i~~~~l~~~~~~s~r~i~~~~~p~ 479 (982)
...+.|+|.+||. .+.+++++.+++..|+. .+..+|... .++.++++++..++..+.. ...-.+
T Consensus 250 ~l~~~~~~p~l~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~---~~~~~R 326 (376)
T 1um8_A 250 DLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALE---RKTGAR 326 (376)
T ss_dssp HHHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHH---TTCTGG
T ss_pred HHhhcCCChHHhcCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcc---cccCcH
Confidence 2246799999995 78888889999999996 455554432 2467999999999888542 111235
Q ss_pred hhhHHHHHHHHH
Q 002012 480 KAIDLVDEAAAK 491 (982)
Q Consensus 480 ~a~~lld~a~~~ 491 (982)
....+++.++..
T Consensus 327 ~L~~~le~~~~~ 338 (376)
T 1um8_A 327 GLRAIIEDFCLD 338 (376)
T ss_dssp GHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555666655544
No 111
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.55 E-value=6.1e-14 Score=162.62 Aligned_cols=199 Identities=23% Similarity=0.354 Sum_probs=136.9
Q ss_pred hcccccchHHHHHHHHHHHHHhcC-----CCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEecccccccc
Q 002012 662 HKRVIGQDIAVKSVADAIRRSRAG-----LSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKH 736 (982)
Q Consensus 662 ~~~iiGq~~a~~~l~~~i~~~~~g-----~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~ 736 (982)
+++|+|+++++..+.+.+...... +. -..|. ++||+||||||||++|+++|..+ +.+|+.++++++...
T Consensus 15 f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g-~~~p~-gvLL~GppGtGKT~Laraia~~~---~~~f~~is~~~~~~~- 88 (476)
T 2ce7_A 15 FKDVGGAEEAIEELKEVVEFLKDPSKFNRIG-ARMPK-GILLVGPPGTGKTLLARAVAGEA---NVPFFHISGSDFVEL- 88 (476)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCTHHHHTTT-CCCCS-EEEEECCTTSSHHHHHHHHHHHH---TCCEEEEEGGGTTTC-
T ss_pred HHHhCCcHHHHHHHHHHHHHhhChHHHhhcC-CCCCC-eEEEECCCCCCHHHHHHHHHHHc---CCCeeeCCHHHHHHH-
Confidence 467999999999999887654320 10 11233 49999999999999999999988 789999999887532
Q ss_pred ccccccCCCCCccccccCCchhHHHhhCCCeEEEEccccccCH--------------HHHHHHHHhhhcCceecCCCcEE
Q 002012 737 SVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEIEKAHQ--------------DVFNILLQLLDDGRITDSQGRTV 802 (982)
Q Consensus 737 ~~~~l~g~~~g~vg~~~~~~l~~~l~~~~~~Vl~lDEidkl~~--------------~~~~~Ll~~le~g~~~d~~g~~~ 802 (982)
++|. +....+.++.......++||||||+|.+.+ ..++.|+..|+.-.
T Consensus 89 ----~~g~-----~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~--------- 150 (476)
T 2ce7_A 89 ----FVGV-----GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFD--------- 150 (476)
T ss_dssp ----CTTH-----HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSC---------
T ss_pred ----Hhcc-----cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccC---------
Confidence 1111 111112355556666789999999999743 36778888877310
Q ss_pred ecccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHH--hccccccccCCCChhHHHHHHHHHH
Q 002012 803 SFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFL--NRIDEYIVFQPLDSKEISKIVEIQM 880 (982)
Q Consensus 803 ~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll--~Rid~ii~F~pl~~~~l~~il~~~l 880 (982)
...+++||++||.... ++|.++ +|||..|.|++++.++..+|++..+
T Consensus 151 ~~~~viVIaaTn~~~~-------------------------------Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~ 199 (476)
T 2ce7_A 151 SKEGIIVMAATNRPDI-------------------------------LDPALLRPGRFDKKIVVDPPDMLGRKKILEIHT 199 (476)
T ss_dssp GGGTEEEEEEESCGGG-------------------------------SCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHH
T ss_pred CCCCEEEEEecCChhh-------------------------------hchhhcccCcceeEeecCCCCHHHHHHHHHHHH
Confidence 1146899999997532 566666 4999999999999999999887655
Q ss_pred HHHHHHHHhCCCCccCCHHH-HHHHHhcCCCCCCCchHHHHHHHHHHHH
Q 002012 881 NRVKDRLKQKKIDLHYTKEA-VTLLGILGFDPNFGARPVKRVIQQLVEN 928 (982)
Q Consensus 881 ~~~~~~~~~~~~~l~i~~~a-~~~L~~~~~~~~~gaR~L~~~i~~~l~~ 928 (982)
+. .. +.+++ ++.|+.. |++ +.+|+|+++++.....
T Consensus 200 ~~-------~~----l~~~v~l~~la~~-t~G-~sgadL~~lv~~Aal~ 235 (476)
T 2ce7_A 200 RN-------KP----LAEDVNLEIIAKR-TPG-FVGADLENLVNEAALL 235 (476)
T ss_dssp TT-------SC----BCTTCCHHHHHHT-CTT-CCHHHHHHHHHHHHHH
T ss_pred Hh-------CC----CcchhhHHHHHHh-cCC-CcHHHHHHHHHHHHHH
Confidence 43 22 22222 4556654 443 4458899888875443
No 112
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.55 E-value=2.6e-14 Score=157.67 Aligned_cols=198 Identities=19% Similarity=0.209 Sum_probs=134.0
Q ss_pred CCcccchHHHHHHHHHhcc--CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEeccccccc-------
Q 002012 269 DPVIGRDDEIRRCIQILSR--RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAG------- 339 (982)
Q Consensus 269 ~~liG~~~~i~~l~~~L~~--~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~------- 339 (982)
+++||++..++.+.+.+.+ ....++||+||||||||++|++++...... +.+++.++|+.+...
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~-------~~~~v~v~~~~~~~~l~~~~lf 74 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSARS-------DRPLVTLNCAALNESLLESELF 74 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSSCS-------SSCCCEEECSSCCHHHHHHHHT
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCccc-------CCCeEEEeCCCCChHHHHHHhc
Confidence 4589999999998887755 567789999999999999999999876332 567888998776421
Q ss_pred -c---cccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCC-------------CeEEE
Q 002012 340 -T---CYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRG-------------ELRCI 402 (982)
Q Consensus 340 -~---~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g-------------~i~vI 402 (982)
. .+.|.... ....+..+ ++ .+||||||+.+. .+.+..|+.+++.+ ++++|
T Consensus 75 g~~~g~~tg~~~~-~~g~~~~a---~~-g~L~LDEi~~l~--------~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI 141 (304)
T 1ojl_A 75 GHEKGAFTGADKR-REGRFVEA---DG-GTLFLDEIGDIS--------PLMQVRLLRAIQEREVQRVGSNQTISVDVRLI 141 (304)
T ss_dssp CCCSSCCC---CC-CCCHHHHH---TT-SEEEEESCTTCC--------HHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEE
T ss_pred CccccccCchhhh-hcCHHHhc---CC-CEEEEeccccCC--------HHHHHHHHHHHhcCEeeecCCcccccCCeEEE
Confidence 0 01111110 11223222 32 489999999985 46677888888755 38999
Q ss_pred EecCchhHhh--hhhcChHHHhccceEEecCCC----HHHHHHHHHHHHHHHhhhcC---CccChHHHHHHHHHhhhhhc
Q 002012 403 GATTLNEYRN--YIEKDPALERRFQQVFCDQPS----VENTISILRGLRERYELHHG---VKISDSALVSAAVLADRYIT 473 (982)
Q Consensus 403 ~at~~~~~~~--~~~~d~al~rRf~~i~i~~Ps----~~e~~~IL~~~~~~~~~~~~---v~i~~~~l~~~~~~s~r~i~ 473 (982)
++||.+.... .-.+++.|.+||..+.+..|+ .+++..+++.+..++...++ ..++++++..+..++.
T Consensus 142 ~atn~~l~~~v~~g~fr~~L~~Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~~w---- 217 (304)
T 1ojl_A 142 AATHRDLAEEVSAGRFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHYDW---- 217 (304)
T ss_dssp EEESSCHHHHHHHTSSCHHHHHHHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHCCC----
T ss_pred EecCccHHHHHHhCCcHHHHHhhcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcCCC----
Confidence 9999863221 113578999999766666665 56777788887777765444 5789999999887742
Q ss_pred cCCCcchhhHHHHHHHHH
Q 002012 474 ERFLPDKAIDLVDEAAAK 491 (982)
Q Consensus 474 ~~~~p~~a~~lld~a~~~ 491 (982)
....+....+++.++..
T Consensus 218 -pGnvReL~~~l~~~~~~ 234 (304)
T 1ojl_A 218 -PGNIRELENAIERAVVL 234 (304)
T ss_dssp -SSHHHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHh
Confidence 01124455556655543
No 113
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.54 E-value=1.1e-13 Score=150.93 Aligned_cols=201 Identities=24% Similarity=0.338 Sum_probs=137.5
Q ss_pred hcCCCCCcccchHHHHHHHHHhcc------------CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEE
Q 002012 264 RSGKLDPVIGRDDEIRRCIQILSR------------RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISL 331 (982)
Q Consensus 264 ~~~~l~~liG~~~~i~~l~~~L~~------------~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l 331 (982)
++-++++++|.++....+.++... ..+.+++|+||||||||+++++++..+ +..++.+
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~----------~~~~i~~ 104 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA----------RVPFITA 104 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHT----------TCCEEEE
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHc----------CCCEEEe
Confidence 445788999998866555543321 123468999999999999999999987 4677888
Q ss_pred ecccccccccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCC---ch---hhHHHHHHhhhcC----CCeEE
Q 002012 332 DMASLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQS---GA---MDASNMLKPMLGR----GELRC 401 (982)
Q Consensus 332 ~~~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~---~~---~~~~~~L~~~le~----g~i~v 401 (982)
+..++.. .+.+.....+..+|+.+.. ..+.++|+||++.+....... .. ....+.+...++. ..+.+
T Consensus 105 ~~~~~~~--~~~~~~~~~i~~~~~~~~~-~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~ 181 (278)
T 1iy2_A 105 SGSDFVE--MFVGVGAARVRDLFETAKR-HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVV 181 (278)
T ss_dssp EHHHHHH--STTTHHHHHHHHHHHHHHT-SCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEE
T ss_pred cHHHHHH--HHhhHHHHHHHHHHHHHHh-cCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEE
Confidence 8766553 2456666777788887764 456799999999886543211 11 2233344444442 24678
Q ss_pred EEecCchhHhhhhhcChHHHh--ccc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHH-HHHHHHHhhhhhccCCC
Q 002012 402 IGATTLNEYRNYIEKDPALER--RFQ-QVFCDQPSVENTISILRGLRERYELHHGVKISDSA-LVSAAVLADRYITERFL 477 (982)
Q Consensus 402 I~at~~~~~~~~~~~d~al~r--Rf~-~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~-l~~~~~~s~r~i~~~~~ 477 (982)
+++|+.++ .+|+++.| ||. .+.++.|+.+++.+||+.+... ..+++++ +..++..+.+ +.
T Consensus 182 ~a~t~~p~-----~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~------~~~~~~~~~~~la~~~~G-----~~ 245 (278)
T 1iy2_A 182 MAATNRPD-----ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARG------KPLAEDVDLALLAKRTPG-----FV 245 (278)
T ss_dssp EEEESCTT-----SSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTT------SCBCTTCCHHHHHHTCTT-----CC
T ss_pred EEecCCch-----hCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHcc------CCCCcccCHHHHHHHcCC-----CC
Confidence 88888887 68999998 786 8999999999999999865432 3444433 5555555443 44
Q ss_pred cchhhHHHHHHHHHhh
Q 002012 478 PDKAIDLVDEAAAKLK 493 (982)
Q Consensus 478 p~~a~~lld~a~~~~~ 493 (982)
+.+...++..|+..+.
T Consensus 246 ~~dl~~l~~~a~~~a~ 261 (278)
T 1iy2_A 246 GADLENLLNEAALLAA 261 (278)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5677788888876544
No 114
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.54 E-value=4.7e-14 Score=149.56 Aligned_cols=201 Identities=11% Similarity=0.055 Sum_probs=136.6
Q ss_pred hHHHhhc-CCCCCcccc---hHHHHHHHHHhccCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecc
Q 002012 259 LTELARS-GKLDPVIGR---DDEIRRCIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMA 334 (982)
Q Consensus 259 l~~~~~~-~~l~~liG~---~~~i~~l~~~L~~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~ 334 (982)
+....++ .+|++++|. +..++.+...+......+++|+||||||||++|+.+++.+... +..++.+++.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~-------~~~~~~~~~~ 89 (242)
T 3bos_A 17 LPVHLPDDETFTSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANEL-------ERRSFYIPLG 89 (242)
T ss_dssp EECCCCTTCSTTTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHT-------TCCEEEEEGG
T ss_pred CCCCCCCCCChhhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHc-------CCeEEEEEHH
Confidence 3344444 578889973 3566666666555567789999999999999999999998543 5678888877
Q ss_pred cccccccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCCCeEEEEecCchhHhhhh
Q 002012 335 SLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRGELRCIGATTLNEYRNYI 414 (982)
Q Consensus 335 ~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g~i~vI~at~~~~~~~~~ 414 (982)
.+..... ..+..+ ..+.+|||||++.+.... .....+..++....+.+.+.+|++++... ....
T Consensus 90 ~~~~~~~----------~~~~~~---~~~~vliiDe~~~~~~~~--~~~~~l~~~l~~~~~~~~~~ii~~~~~~~-~~~~ 153 (242)
T 3bos_A 90 IHASIST----------ALLEGL---EQFDLICIDDVDAVAGHP--LWEEAIFDLYNRVAEQKRGSLIVSASASP-MEAG 153 (242)
T ss_dssp GGGGSCG----------GGGTTG---GGSSEEEEETGGGGTTCH--HHHHHHHHHHHHHHHHCSCEEEEEESSCT-TTTT
T ss_pred HHHHHHH----------HHHHhc---cCCCEEEEeccccccCCH--HHHHHHHHHHHHHHHcCCCeEEEEcCCCH-HHHH
Confidence 6653211 111111 334599999999985321 00122333444444566664555555432 1122
Q ss_pred hcChHHHhcc---ceEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCCcchhhHHHHHHHHH
Q 002012 415 EKDPALERRF---QQVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLPDKAIDLVDEAAAK 491 (982)
Q Consensus 415 ~~d~al~rRf---~~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~p~~a~~lld~a~~~ 491 (982)
..++++.+|| ..+.++.|+.+++..+++..... .++.++++++..++..+.+. +..+..+++.+...
T Consensus 154 ~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~l~~~~~g~------~r~l~~~l~~~~~~ 223 (242)
T 3bos_A 154 FVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAM----RGLQLPEDVGRFLLNRMARD------LRTLFDVLDRLDKA 223 (242)
T ss_dssp CCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHH----TTCCCCHHHHHHHHHHTTTC------HHHHHHHHHHHHHH
T ss_pred HhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHccCC------HHHHHHHHHHHHHH
Confidence 3569999999 79999999999999999887765 57889999999998886543 46777888877765
Q ss_pred h
Q 002012 492 L 492 (982)
Q Consensus 492 ~ 492 (982)
+
T Consensus 224 a 224 (242)
T 3bos_A 224 S 224 (242)
T ss_dssp H
T ss_pred H
Confidence 4
No 115
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.54 E-value=5.3e-14 Score=156.08 Aligned_cols=184 Identities=21% Similarity=0.341 Sum_probs=132.5
Q ss_pred hcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCC--CceEEEeccccccccccc
Q 002012 662 HKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTE--NALVRIDMSEYMEKHSVS 739 (982)
Q Consensus 662 ~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~--~~~v~i~~s~~~~~~~~~ 739 (982)
+.+++||+.+++.+...+.. ....+++|+||||||||++|+.+++.+.+.+ .+++.++++.....
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~---------~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~---- 82 (319)
T 2chq_A 16 LDEVVGQDEVIQRLKGYVER---------KNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGI---- 82 (319)
T ss_dssp GGGSCSCHHHHHHHHTTTTT---------TCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCT----
T ss_pred HHHHhCCHHHHHHHHHHHhC---------CCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccCh----
Confidence 36799999998888766642 1122499999999999999999999985432 34677777653211
Q ss_pred cccCCCCCccccccCCch-hHHHh-----hCCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEEec
Q 002012 740 RLVGAPPGYVGYEEGGQL-TEVVR-----RRPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTS 813 (982)
Q Consensus 740 ~l~g~~~g~vg~~~~~~l-~~~l~-----~~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~ts 813 (982)
.....+ ..... ..++.||+|||+|.+++..++.|++++++.. .+++||+++
T Consensus 83 ------------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~-----------~~~~~i~~~ 139 (319)
T 2chq_A 83 ------------DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYS-----------KSCRFILSC 139 (319)
T ss_dssp ------------TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSS-----------SSEEEEEEE
T ss_pred ------------HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcC-----------CCCeEEEEe
Confidence 111111 11111 2446899999999999999999999998621 468899998
Q ss_pred CCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHHHHHHHHHhCCCC
Q 002012 814 NIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKID 893 (982)
Q Consensus 814 n~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~~~~~~~~~~~ 893 (982)
|.... +.+++.+|+. .+.|.|++.+++.+++...+.. .+
T Consensus 140 ~~~~~-------------------------------l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~-------~~-- 178 (319)
T 2chq_A 140 NYVSR-------------------------------IIEPIQSRCA-VFRFKPVPKEAMKKRLLEICEK-------EG-- 178 (319)
T ss_dssp SCGGG-------------------------------SCHHHHTTCE-EEECCCCCHHHHHHHHHHHHHT-------TC--
T ss_pred CChhh-------------------------------cchHHHhhCe-EEEecCCCHHHHHHHHHHHHHH-------cC--
Confidence 86432 6789999995 8999999999998888776653 34
Q ss_pred ccCCHHHHHHHHhcCCCCCCCchHHHHHHHHH
Q 002012 894 LHYTKEAVTLLGILGFDPNFGARPVKRVIQQL 925 (982)
Q Consensus 894 l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~ 925 (982)
+.+++++++.|+.. +.++ .|.+.+.++..
T Consensus 179 ~~i~~~~l~~l~~~-~~G~--~r~~~~~l~~~ 207 (319)
T 2chq_A 179 VKITEDGLEALIYI-SGGD--FRKAINALQGA 207 (319)
T ss_dssp CCBCHHHHHHHHHT-TTTC--HHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH-cCCC--HHHHHHHHHHH
Confidence 67899999999965 4433 46666666653
No 116
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.54 E-value=2.2e-14 Score=170.64 Aligned_cols=177 Identities=18% Similarity=0.273 Sum_probs=118.3
Q ss_pred CcccchHHHHHHHHHhc------cCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEeccccccc----
Q 002012 270 PVIGRDDEIRRCIQILS------RRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAG---- 339 (982)
Q Consensus 270 ~liG~~~~i~~l~~~L~------~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~---- 339 (982)
+++|.++..+++.+.+. .....+++|+||||||||++|++++..+ +.++..++++.+...
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l----------~~~~~~i~~~~~~~~~~~~ 151 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL----------GRKFVRISLGGVRDESEIR 151 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH----------TCEEEEECCCC--------
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc----------CCCeEEEEecccchhhhhh
Confidence 48898887777655332 1245579999999999999999999998 677888877664431
Q ss_pred ---ccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcC-----------------CCe
Q 002012 340 ---TCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGR-----------------GEL 399 (982)
Q Consensus 340 ---~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~-----------------g~i 399 (982)
..|.|.....+...|..+.. . +.|||||||+.+....+ .+.++.|+++++. .++
T Consensus 152 g~~~~~ig~~~~~~~~~~~~a~~-~-~~vl~lDEid~l~~~~~----~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v 225 (543)
T 3m6a_A 152 GHRRTYVGAMPGRIIQGMKKAGK-L-NPVFLLDEIDKMSSDFR----GDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKV 225 (543)
T ss_dssp ------------CHHHHHHTTCS-S-SEEEEEEESSSCC-------------CCGGGTCTTTTTBCCCSSSCCCCBCSSC
T ss_pred hHHHHHhccCchHHHHHHHHhhc-c-CCEEEEhhhhhhhhhhc----cCHHHHHHHHHhhhhcceeecccCCeeecccce
Confidence 13455555555555554432 2 33999999999875432 2244667777752 457
Q ss_pred EEEEecCchhHhhhhhcChHHHhccceEEecCCCHHHHHHHHHHHH-HHHhhhc-----CCccChHHHHHHHHH
Q 002012 400 RCIGATTLNEYRNYIEKDPALERRFQQVFCDQPSVENTISILRGLR-ERYELHH-----GVKISDSALVSAAVL 467 (982)
Q Consensus 400 ~vI~at~~~~~~~~~~~d~al~rRf~~i~i~~Ps~~e~~~IL~~~~-~~~~~~~-----~v~i~~~~l~~~~~~ 467 (982)
++|+|||... .++|+|++||..|.++.|+.+++..|++... .++...+ ++.++++++..++..
T Consensus 226 ~iI~ttN~~~-----~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~ 294 (543)
T 3m6a_A 226 LFIATANNLA-----TIPGPLRDRMEIINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRY 294 (543)
T ss_dssp EEEEECSSTT-----TSCHHHHHHEEEEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHH
T ss_pred EEEeccCccc-----cCCHHHHhhcceeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHh
Confidence 8999999877 7899999999999999999999999997643 4333333 457889999887764
No 117
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.52 E-value=4.7e-14 Score=164.98 Aligned_cols=203 Identities=17% Similarity=0.233 Sum_probs=141.5
Q ss_pred hcccccchHHHHHHHHHHHHHhcCCC----CCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccc
Q 002012 662 HKRVIGQDIAVKSVADAIRRSRAGLS----DPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHS 737 (982)
Q Consensus 662 ~~~iiGq~~a~~~l~~~i~~~~~g~~----~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~ 737 (982)
+..|+|++.+++.|.+.+......-. ....+..++||+||||||||++|+++++.+ +.+|+.++|+++...
T Consensus 203 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~vn~~~l~~~-- 277 (489)
T 3hu3_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSK-- 277 (489)
T ss_dssp GGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC---SSEEEEEEHHHHHTS--
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh---CCCEEEEEchHhhhh--
Confidence 46799999999999998865311000 001223359999999999999999999987 789999999887532
Q ss_pred cccccCCCCCccccccC--CchhHHHhhCCCeEEEEccccccCH-----------HHHHHHHHhhhcCceecCCCcEEec
Q 002012 738 VSRLVGAPPGYVGYEEG--GQLTEVVRRRPYSVVLFDEIEKAHQ-----------DVFNILLQLLDDGRITDSQGRTVSF 804 (982)
Q Consensus 738 ~~~l~g~~~g~vg~~~~--~~l~~~l~~~~~~Vl~lDEidkl~~-----------~~~~~Ll~~le~g~~~d~~g~~~~~ 804 (982)
+.|...+ ..++.......++||||||||.+.+ .+++.|+..|+... ..
T Consensus 278 ----------~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~---------~~ 338 (489)
T 3hu3_A 278 ----------LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK---------QR 338 (489)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSC---------TT
T ss_pred ----------hcchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccc---------cC
Confidence 2222111 1244455566678999999987754 68999999998522 12
Q ss_pred ccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHh--ccccccccCCCChhHHHHHHHHHHHH
Q 002012 805 TNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLN--RIDEYIVFQPLDSKEISKIVEIQMNR 882 (982)
Q Consensus 805 ~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~--Rid~ii~F~pl~~~~l~~il~~~l~~ 882 (982)
.+++||+|||.... +++++.+ ||+..|.|++++.++..+|+...+..
T Consensus 339 ~~v~vIaaTn~~~~-------------------------------Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~ 387 (489)
T 3hu3_A 339 AHVIVMAATNRPNS-------------------------------IDPALRRFGRFDREVDIGIPDATGRLEILQIHTKN 387 (489)
T ss_dssp SCEEEEEEESCGGG-------------------------------BCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTT
T ss_pred CceEEEEecCCccc-------------------------------cCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhc
Confidence 46899999997532 6677776 89989999999999999998866543
Q ss_pred HHHHHHhCCCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHH
Q 002012 883 VKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIA 931 (982)
Q Consensus 883 ~~~~~~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~l~~~la 931 (982)
.. +.. +..++.|+.. ...|..+.|..++......++.
T Consensus 388 -------~~--l~~-~~~l~~la~~--t~g~s~~dL~~L~~~A~~~a~r 424 (489)
T 3hu3_A 388 -------MK--LAD-DVDLEQVANE--THGHVGADLAALCSEAALQAIR 424 (489)
T ss_dssp -------SC--BCT-TCCHHHHHHT--CTTCCHHHHHHHHHHHHHHHHH
T ss_pred -------CC--Ccc-hhhHHHHHHH--ccCCcHHHHHHHHHHHHHHHHH
Confidence 22 221 1124556654 3346668888888876555543
No 118
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.52 E-value=2.3e-15 Score=186.90 Aligned_cols=199 Identities=22% Similarity=0.342 Sum_probs=147.2
Q ss_pred CCCCCcccchHHHHHHHHHhcc-------------CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEe
Q 002012 266 GKLDPVIGRDDEIRRCIQILSR-------------RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLD 332 (982)
Q Consensus 266 ~~l~~liG~~~~i~~l~~~L~~-------------~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~ 332 (982)
-.+++++|.++..+.+.+.+.. ....+++|+||||||||++|+++|..+ +..++.++
T Consensus 474 v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~----------~~~~i~v~ 543 (806)
T 1ypw_A 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISIK 543 (806)
T ss_dssp CSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHH----------TCCCCCCC
T ss_pred ccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHh----------CCCEEEEe
Confidence 4677899999988888876542 345689999999999999999999998 67788888
Q ss_pred cccccccccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCc------hhhHHHHHHhhhc----CCCeEEE
Q 002012 333 MASLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSG------AMDASNMLKPMLG----RGELRCI 402 (982)
Q Consensus 333 ~~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~------~~~~~~~L~~~le----~g~i~vI 402 (982)
++.+. .+|.|+.+..+..+|+.+... .++||||||||.+...+.... ...+.+.|+..++ ...+.+|
T Consensus 544 ~~~l~--~~~~g~~~~~i~~~f~~a~~~-~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI 620 (806)
T 1ypw_A 544 GPELL--TMWFGESEANVREIFDKARQA-APCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFII 620 (806)
T ss_dssp CSSST--TCCTTTSSHHHHHHHHHHHHH-CSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCC
T ss_pred chHhh--hhhcCccHHHHHHHHHHHHhc-CCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEE
Confidence 88887 458899999999999988864 477999999999986654321 2345566666664 4578999
Q ss_pred EecCchhHhhhhhcChHHHh--ccc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCCcc
Q 002012 403 GATTLNEYRNYIEKDPALER--RFQ-QVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLPD 479 (982)
Q Consensus 403 ~at~~~~~~~~~~~d~al~r--Rf~-~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~p~ 479 (982)
+|||.++ .+|+++.| ||+ .|+++.|+.+++..||+....+.....++.+ ..++.. +..+.++
T Consensus 621 ~tTN~~~-----~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l-----~~la~~-----t~g~sga 685 (806)
T 1ypw_A 621 GATNRPD-----IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDL-----EFLAKM-----TNGFSGA 685 (806)
T ss_dssp CCCBSCG-----GGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC----CCCC-----SCSCGG-----GSSSCCH
T ss_pred EecCCcc-----cCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCCcccCH-----HHHHHh-----ccccCHH
Confidence 9999988 68999999 997 9999999999999999866544221112221 222222 3345567
Q ss_pred hhhHHHHHHHHHh
Q 002012 480 KAIDLVDEAAAKL 492 (982)
Q Consensus 480 ~a~~lld~a~~~~ 492 (982)
+...++.+|...+
T Consensus 686 di~~l~~~a~~~a 698 (806)
T 1ypw_A 686 DLTEICQRACKLA 698 (806)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777776544
No 119
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.52 E-value=9.8e-14 Score=150.74 Aligned_cols=177 Identities=16% Similarity=0.187 Sum_probs=120.3
Q ss_pred CCcccchHHHHHHHH-------Hhc---cCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccc
Q 002012 269 DPVIGRDDEIRRCIQ-------ILS---RRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVA 338 (982)
Q Consensus 269 ~~liG~~~~i~~l~~-------~L~---~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~ 338 (982)
..++|+++.++.++. .+. .....++||+||||||||++|+++|+.+ +.+++.+++++...
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~----------~~~~~~i~~~~~~~ 102 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEES----------NFPFIKICSPDKMI 102 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHH----------TCSEEEEECGGGCT
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHh----------CCCEEEEeCHHHhc
Confidence 457788777666555 232 4456689999999999999999999987 78889888765443
Q ss_pred cccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCC--chhhHHHHHHhhhcC-----CCeEEEEecCchhHh
Q 002012 339 GTCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQS--GAMDASNMLKPMLGR-----GELRCIGATTLNEYR 411 (982)
Q Consensus 339 ~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~--~~~~~~~~L~~~le~-----g~i~vI~at~~~~~~ 411 (982)
|. ..+.....+..++..+.. ..+.||||||+|.+.+..... ....+.+.|...++. ..+.+|++||.++
T Consensus 103 g~-~~~~~~~~~~~~~~~~~~-~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~-- 178 (272)
T 1d2n_A 103 GF-SETAKCQAMKKIFDDAYK-SQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKD-- 178 (272)
T ss_dssp TC-CHHHHHHHHHHHHHHHHT-SSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHH--
T ss_pred CC-chHHHHHHHHHHHHHHHh-cCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChh--
Confidence 32 223344566777776654 456799999999996543211 234566677766652 3577899998886
Q ss_pred hhhhcCh-HHHhccc-eEEecCCCH-HHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhh
Q 002012 412 NYIEKDP-ALERRFQ-QVFCDQPSV-ENTISILRGLRERYELHHGVKISDSALVSAAVLADRY 471 (982)
Q Consensus 412 ~~~~~d~-al~rRf~-~i~i~~Ps~-~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~ 471 (982)
.+++ .+.+||. .+.++.++. +++..++.. . ..++++.+..++..+.+|
T Consensus 179 ---~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~---~------~~~~~~~~~~l~~~~~g~ 229 (272)
T 1d2n_A 179 ---VLQEMEMLNAFSTTIHVPNIATGEQLLEALEL---L------GNFKDKERTTIAQQVKGK 229 (272)
T ss_dssp ---HHHHTTCTTTSSEEEECCCEEEHHHHHHHHHH---H------TCSCHHHHHHHHHHHTTS
T ss_pred ---hcchhhhhcccceEEcCCCccHHHHHHHHHHh---c------CCCCHHHHHHHHHHhcCC
Confidence 4555 6788985 566654443 444444432 1 246888999999888765
No 120
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.51 E-value=1.3e-13 Score=153.56 Aligned_cols=184 Identities=22% Similarity=0.381 Sum_probs=132.2
Q ss_pred hcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCC--CceEEEeccccccccccc
Q 002012 662 HKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTE--NALVRIDMSEYMEKHSVS 739 (982)
Q Consensus 662 ~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~--~~~v~i~~s~~~~~~~~~ 739 (982)
+..++||+++++.+...+... + ..+++|+||||||||++|+.+++.+.+.. ..++.+++++......+.
T Consensus 24 ~~~~~g~~~~~~~l~~~l~~~--------~-~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 94 (327)
T 1iqp_A 24 LDDIVGQEHIVKRLKHYVKTG--------S-MPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVIR 94 (327)
T ss_dssp TTTCCSCHHHHHHHHHHHHHT--------C-CCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTTH
T ss_pred HHHhhCCHHHHHHHHHHHHcC--------C-CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHHHH
Confidence 467999999999998888742 1 22599999999999999999999875432 346667765432111000
Q ss_pred cccCCCCCccccccCCchhHHHh-----hCCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEEecC
Q 002012 740 RLVGAPPGYVGYEEGGQLTEVVR-----RRPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSN 814 (982)
Q Consensus 740 ~l~g~~~g~vg~~~~~~l~~~l~-----~~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn 814 (982)
..+.+... ...+.||+|||+|.+++..++.|++++++.. .+++||+++|
T Consensus 95 ---------------~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~-----------~~~~~i~~~~ 148 (327)
T 1iqp_A 95 ---------------EKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFS-----------SNVRFILSCN 148 (327)
T ss_dssp ---------------HHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTT-----------TTEEEEEEES
T ss_pred ---------------HHHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcC-----------CCCeEEEEeC
Confidence 00111111 2457899999999999999999999999632 3578899888
Q ss_pred CChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHHHHHHHHHhCCCCc
Q 002012 815 IGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDL 894 (982)
Q Consensus 815 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~~~~~~~~~~~l 894 (982)
.... +.+.+.+|+. .+.|+|++.+++.+++...+.. .+ +
T Consensus 149 ~~~~-------------------------------l~~~l~sr~~-~~~~~~l~~~~~~~~l~~~~~~-------~~--~ 187 (327)
T 1iqp_A 149 YSSK-------------------------------IIEPIQSRCA-IFRFRPLRDEDIAKRLRYIAEN-------EG--L 187 (327)
T ss_dssp CGGG-------------------------------SCHHHHHTEE-EEECCCCCHHHHHHHHHHHHHT-------TT--C
T ss_pred Cccc-------------------------------cCHHHHhhCc-EEEecCCCHHHHHHHHHHHHHh-------cC--C
Confidence 6432 6778999995 8999999999999888766543 34 5
Q ss_pred cCCHHHHHHHHhcCCCCCCCchHHHHHHHH
Q 002012 895 HYTKEAVTLLGILGFDPNFGARPVKRVIQQ 924 (982)
Q Consensus 895 ~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~ 924 (982)
.++++++++|+..+ .+ +.|.+.+.++.
T Consensus 188 ~~~~~~~~~l~~~~-~g--~~r~~~~~l~~ 214 (327)
T 1iqp_A 188 ELTEEGLQAILYIA-EG--DMRRAINILQA 214 (327)
T ss_dssp EECHHHHHHHHHHH-TT--CHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHC-CC--CHHHHHHHHHH
Confidence 68999999998863 32 34666666654
No 121
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.51 E-value=8.1e-14 Score=157.05 Aligned_cols=199 Identities=16% Similarity=0.203 Sum_probs=133.1
Q ss_pred hcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcC---CCCceEEEecccccccccc
Q 002012 662 HKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFN---TENALVRIDMSEYMEKHSV 738 (982)
Q Consensus 662 ~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~---~~~~~v~i~~s~~~~~~~~ 738 (982)
+..++|++++++.+...+.. ....+++|+||||||||++|+++++.+.+ ....++.+++++......+
T Consensus 36 ~~~i~g~~~~~~~l~~~l~~---------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~ 106 (353)
T 1sxj_D 36 LDEVTAQDHAVTVLKKTLKS---------ANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIV 106 (353)
T ss_dssp TTTCCSCCTTHHHHHHHTTC---------TTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHH
T ss_pred HHHhhCCHHHHHHHHHHHhc---------CCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHH
Confidence 46799999999888777642 11224999999999999999999998742 2345677777653211111
Q ss_pred ccccCC-CCCccccccCCchhHHHhhCCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCCh
Q 002012 739 SRLVGA-PPGYVGYEEGGQLTEVVRRRPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGS 817 (982)
Q Consensus 739 ~~l~g~-~~g~vg~~~~~~l~~~l~~~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~ 817 (982)
...+.. ........ ............+.||||||+|.+++..++.|+++|++.. .+++||+++|...
T Consensus 107 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~-----------~~~~~il~~~~~~ 174 (353)
T 1sxj_D 107 REKVKNFARLTVSKP-SKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYS-----------GVTRFCLICNYVT 174 (353)
T ss_dssp TTHHHHHHHSCCCCC-CTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTT-----------TTEEEEEEESCGG
T ss_pred HHHHHHHhhhccccc-chhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcC-----------CCceEEEEeCchh
Confidence 100000 00000000 0000001112345799999999999999999999999742 3577888887543
Q ss_pred HHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHHHHHHHHHhCCCCccCC
Q 002012 818 HYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYT 897 (982)
Q Consensus 818 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~~~~~~~~~~~l~i~ 897 (982)
. +.+.+.+|+. .+.|.|++.+++..++...+.. .+ +.++
T Consensus 175 ~-------------------------------l~~~l~sR~~-~i~~~~~~~~~~~~~l~~~~~~-------~~--~~i~ 213 (353)
T 1sxj_D 175 R-------------------------------IIDPLASQCS-KFRFKALDASNAIDRLRFISEQ-------EN--VKCD 213 (353)
T ss_dssp G-------------------------------SCHHHHHHSE-EEECCCCCHHHHHHHHHHHHHT-------TT--CCCC
T ss_pred h-------------------------------CcchhhccCc-eEEeCCCCHHHHHHHHHHHHHH-------hC--CCCC
Confidence 2 6788999995 8999999999999888776653 33 6799
Q ss_pred HHHHHHHHhcCCCCCCCchHHHHHHHHH
Q 002012 898 KEAVTLLGILGFDPNFGARPVKRVIQQL 925 (982)
Q Consensus 898 ~~a~~~L~~~~~~~~~gaR~L~~~i~~~ 925 (982)
++++++|+..++ + ..|.+.+.++..
T Consensus 214 ~~~l~~l~~~~~-G--~~r~~~~~l~~~ 238 (353)
T 1sxj_D 214 DGVLERILDISA-G--DLRRGITLLQSA 238 (353)
T ss_dssp HHHHHHHHHHTS-S--CHHHHHHHHHHT
T ss_pred HHHHHHHHHHcC-C--CHHHHHHHHHHH
Confidence 999999999754 2 356666666653
No 122
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.51 E-value=4.8e-13 Score=152.54 Aligned_cols=217 Identities=17% Similarity=0.122 Sum_probs=145.0
Q ss_pred hHHHhhcCCCCCcccchHHHHHHHHHhcc----CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCC-CCeEEEEec
Q 002012 259 LTELARSGKLDPVIGRDDEIRRCIQILSR----RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQ-NRKLISLDM 333 (982)
Q Consensus 259 l~~~~~~~~l~~liG~~~~i~~l~~~L~~----~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~-~~~v~~l~~ 333 (982)
|...+.| ++++|++++++.+...+.. ....+++|+||||||||++|+.+++.+........-. +..++.+++
T Consensus 13 l~~~~~p---~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~ 89 (384)
T 2qby_B 13 IDPLSVF---KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNC 89 (384)
T ss_dssp TCHHHHC---SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEH
T ss_pred cCCccCC---CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEEC
Confidence 4455555 6789999999988876654 3456799999999999999999999874320000001 568888887
Q ss_pred cccc-ccc---------------ccccc-HHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhH-HHHHHhhhc
Q 002012 334 ASLV-AGT---------------CYRGD-FEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDA-SNMLKPMLG 395 (982)
Q Consensus 334 ~~l~-~~~---------------~~~g~-~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~-~~~L~~~le 395 (982)
.... ... ...|. ....+..++..+. ..+.||||||+|.+..... .++ ...|....
T Consensus 90 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~~~~vlilDEi~~l~~~~~----~~~~l~~l~~~~- 162 (384)
T 2qby_B 90 REVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTR--NIRAIIYLDEVDTLVKRRG----GDIVLYQLLRSD- 162 (384)
T ss_dssp HHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHS--SSCEEEEEETTHHHHHSTT----SHHHHHHHHTSS-
T ss_pred ccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhc--cCCCEEEEECHHHhccCCC----CceeHHHHhcCC-
Confidence 6543 100 01111 1222333333332 2233999999999975421 233 44444443
Q ss_pred CCCeEEEEecCchhHhhhhhcChHHHhcc-ceEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhcc
Q 002012 396 RGELRCIGATTLNEYRNYIEKDPALERRF-QQVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITE 474 (982)
Q Consensus 396 ~g~i~vI~at~~~~~~~~~~~d~al~rRf-~~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~ 474 (982)
.++.+|++|+..++. ..+++++.+|| ..+.+++|+.+++..|++..... ...+..++++++..++.++.++
T Consensus 163 -~~~~iI~~t~~~~~~--~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~--~~~~~~~~~~~~~~i~~~~~~~--- 234 (384)
T 2qby_B 163 -ANISVIMISNDINVR--DYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEY--GLIKGTYDDEILSYIAAISAKE--- 234 (384)
T ss_dssp -SCEEEEEECSSTTTT--TTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHH--TSCTTSCCSHHHHHHHHHHHTT---
T ss_pred -cceEEEEEECCCchH--hhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHh--hcccCCcCHHHHHHHHHHHHhc---
Confidence 789999999987532 25799999998 48999999999999999876653 1234678999999999987632
Q ss_pred CCCcchhhHHHHHHHHHhh
Q 002012 475 RFLPDKAIDLVDEAAAKLK 493 (982)
Q Consensus 475 ~~~p~~a~~lld~a~~~~~ 493 (982)
...+..+.+++..|...+.
T Consensus 235 ~G~~r~a~~~l~~a~~~a~ 253 (384)
T 2qby_B 235 HGDARKAVNLLFRAAQLAS 253 (384)
T ss_dssp CCCHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHHhc
Confidence 1345778888888876554
No 123
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.51 E-value=6.6e-15 Score=143.74 Aligned_cols=138 Identities=11% Similarity=0.157 Sum_probs=103.5
Q ss_pred cccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEecccccccccccccc
Q 002012 663 KRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRLV 742 (982)
Q Consensus 663 ~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l~ 742 (982)
-.++|++.+++.+.+.+...... + .+++|+||||||||++|+++++.. . +++.++|+.+....
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~------~-~~vll~G~~GtGKt~lA~~i~~~~---~-~~~~~~~~~~~~~~------ 66 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKR------T-SPVFLTGEAGSPFETVARYFHKNG---T-PWVSPARVEYLIDM------ 66 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTC------S-SCEEEEEETTCCHHHHHGGGCCTT---S-CEECCSSTTHHHHC------
T ss_pred cCceeCCHHHHHHHHHHHHHhCC------C-CcEEEECCCCccHHHHHHHHHHhC---C-CeEEechhhCChHh------
Confidence 35899999999999998865321 1 249999999999999999999876 3 89999998764321
Q ss_pred CCCCCccccccCCchhHHHhhCCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCChHHHHH
Q 002012 743 GAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILE 822 (982)
Q Consensus 743 g~~~g~vg~~~~~~l~~~l~~~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~i~~ 822 (982)
..+.+..+.+++|||||+|.++++.|..|+++|+++. ..++++|+|||.+.... .
T Consensus 67 --------------~~~~~~~a~~~~l~lDei~~l~~~~q~~Ll~~l~~~~----------~~~~~iI~~tn~~~~~~-~ 121 (143)
T 3co5_A 67 --------------PMELLQKAEGGVLYVGDIAQYSRNIQTGITFIIGKAE----------RCRVRVIASCSYAAGSD-G 121 (143)
T ss_dssp --------------HHHHHHHTTTSEEEEEECTTCCHHHHHHHHHHHHHHT----------TTTCEEEEEEEECTTTC--
T ss_pred --------------hhhHHHhCCCCeEEEeChHHCCHHHHHHHHHHHHhCC----------CCCEEEEEecCCCHHHH-H
Confidence 3445566677899999999999999999999999753 24588999999765422 1
Q ss_pred hhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhcccc-ccccCCC
Q 002012 823 TLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDE-YIVFQPL 867 (982)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~-ii~F~pl 867 (982)
.. |+++|++|+.. .|..|||
T Consensus 122 ------------------------~~-~~~~L~~rl~~~~i~lPpL 142 (143)
T 3co5_A 122 ------------------------IS-CEEKLAGLFSESVVRIPPL 142 (143)
T ss_dssp -------------------------C-HHHHHHHHSSSEEEEECCC
T ss_pred ------------------------hC-ccHHHHHHhcCcEEeCCCC
Confidence 13 77889999865 5777776
No 124
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=99.51 E-value=1.6e-12 Score=176.32 Aligned_cols=132 Identities=13% Similarity=0.161 Sum_probs=93.9
Q ss_pred HHHHHHhccCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccccccccccHHHHHHHHHHHHH
Q 002012 279 RRCIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGTCYRGDFEKRLKAVLKEVT 358 (982)
Q Consensus 279 ~~l~~~L~~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~~~~g~~e~~l~~l~~~~~ 358 (982)
..+..+|.- ..+..+.||+|||||.+++.||+.+ |..++.++|++-..- ..+..+|..+.
T Consensus 595 ~tl~~Al~~--~~gg~~~GPaGtGKTet~k~La~~l----------gr~~~vfnC~~~~d~--------~~~g~i~~G~~ 654 (3245)
T 3vkg_A 595 LTLTQALES--RMGGNPFGPAGTGKTETVKALGSQL----------GRFVLVFCCDEGFDL--------QAMSRIFVGLC 654 (3245)
T ss_dssp HHHHHHHHT--TCEEEEECSTTSSHHHHHHHHHHHT----------TCCEEEEECSSCCCH--------HHHHHHHHHHH
T ss_pred HHHHHHHHh--cCCCCCCCCCCCCHHHHHHHHHHHh----------CCeEEEEeCCCCCCH--------HHHHHHHhhHh
Confidence 334444433 3345789999999999999999999 899999998764421 13455565555
Q ss_pred hcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhc---------------C-C-------CeEEEEecCchhHhhhhh
Q 002012 359 KSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLG---------------R-G-------ELRCIGATTLNEYRNYIE 415 (982)
Q Consensus 359 ~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le---------------~-g-------~i~vI~at~~~~~~~~~~ 415 (982)
.. +.+.++||++++. .++..++.+.+. . | ...+++|+|+ .|.+..+
T Consensus 655 ~~--GaW~cfDEfNrl~--------~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNp-gY~gr~e 723 (3245)
T 3vkg_A 655 QC--GAWGCFDEFNRLE--------ERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNP-GYAGRSN 723 (3245)
T ss_dssp HH--TCEEEEETTTSSC--------HHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCC-CGGGCCC
T ss_pred hc--CcEEEehhhhcCC--------HHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCC-CccCccc
Confidence 43 4589999999974 333333322111 1 3 3567777776 7888889
Q ss_pred cChHHHhccceEEecCCCHHHHHHHH
Q 002012 416 KDPALERRFQQVFCDQPSVENTISIL 441 (982)
Q Consensus 416 ~d~al~rRf~~i~i~~Ps~~e~~~IL 441 (982)
++++|++||..|.+..|+.+.+.+|+
T Consensus 724 LP~nLk~lFr~v~m~~Pd~~~i~ei~ 749 (3245)
T 3vkg_A 724 LPDNLKKLFRSMAMIKPDREMIAQVM 749 (3245)
T ss_dssp SCHHHHTTEEEEECCSCCHHHHHHHH
T ss_pred ChHHHHhhcEEEEEeCCCHHHHHHHH
Confidence 99999999999999999998777764
No 125
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.50 E-value=1.7e-14 Score=156.33 Aligned_cols=197 Identities=21% Similarity=0.336 Sum_probs=130.4
Q ss_pred hcccccchHHHHHHHHHHHHHhc-------CCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEecccccc
Q 002012 662 HKRVIGQDIAVKSVADAIRRSRA-------GLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYME 734 (982)
Q Consensus 662 ~~~iiGq~~a~~~l~~~i~~~~~-------g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~ 734 (982)
+.+++|++.+++.+.+.+..... +.. .+. ++||+||||||||++|+++|+.+ +.+++.++++.+..
T Consensus 10 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~-~vll~G~~GtGKT~la~~la~~~---~~~~~~v~~~~~~~ 82 (268)
T 2r62_A 10 FKDMAGNEEAKEEVVEIVDFLKYPERYANLGAK---IPK-GVLLVGPPGTGKTLLAKAVAGEA---HVPFFSMGGSSFIE 82 (268)
T ss_dssp STTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCC---CCS-CCCCBCSSCSSHHHHHHHHHHHH---TCCCCCCCSCTTTT
T ss_pred HHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCC---CCc-eEEEECCCCCcHHHHHHHHHHHh---CCCEEEechHHHHH
Confidence 46799999999999887764321 211 122 39999999999999999999998 66888888877643
Q ss_pred ccccccccCCCCCccccccCCchhHHHhhCCCeEEEEccccccCHH---------------HHHHHHHhhhcCceecCCC
Q 002012 735 KHSVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEIEKAHQD---------------VFNILLQLLDDGRITDSQG 799 (982)
Q Consensus 735 ~~~~~~l~g~~~g~vg~~~~~~l~~~l~~~~~~Vl~lDEidkl~~~---------------~~~~Ll~~le~g~~~d~~g 799 (982)
. +.|... .....+++.+....++||||||+|.+... .++.|+..++.-.
T Consensus 83 ~-----~~~~~~-----~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~------ 146 (268)
T 2r62_A 83 M-----FVGLGA-----SRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFG------ 146 (268)
T ss_dssp S-----CSSSCS-----SSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSS------
T ss_pred h-----hcchHH-----HHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcc------
Confidence 2 222211 11234566666667789999999998654 3455666665311
Q ss_pred cEEecccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHh--ccccccccCCCChhHHHHHHH
Q 002012 800 RTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLN--RIDEYIVFQPLDSKEISKIVE 877 (982)
Q Consensus 800 ~~~~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~--Rid~ii~F~pl~~~~l~~il~ 877 (982)
....+++||+|||.... +++.+++ ||+..+.|++++.++..+++.
T Consensus 147 --~~~~~v~vi~ttn~~~~-------------------------------ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~ 193 (268)
T 2r62_A 147 --SENAPVIVLAATNRPEI-------------------------------LDPALMRPGRFDRQVLVDKPDFNGRVEILK 193 (268)
T ss_dssp --CSCSCCEEEECBSCCTT-------------------------------SCGGGGSSSSSCCCCBCCCCCTTTHHHHHH
T ss_pred --cCCCCEEEEEecCCchh-------------------------------cCHhHcCCCCCCeEEEecCcCHHHHHHHHH
Confidence 01235889999997642 5667776 999999999999999999987
Q ss_pred HHHHHHHHHHHhCCCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHHHH
Q 002012 878 IQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLV 926 (982)
Q Consensus 878 ~~l~~~~~~~~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~l 926 (982)
..+.. .. +. ++..++.|+... ..+..|.|+++++...
T Consensus 194 ~~~~~-------~~--~~-~~~~~~~la~~~--~g~~g~dl~~l~~~a~ 230 (268)
T 2r62_A 194 VHIKG-------VK--LA-NDVNLQEVAKLT--AGLAGADLANIINEAA 230 (268)
T ss_dssp HHTSS-------SC--CC-SSCCTTTTTSSS--CSSCHHHHHHHHHHHH
T ss_pred HHHhc-------CC--CC-CccCHHHHHHHc--CCCCHHHHHHHHHHHH
Confidence 66542 11 11 111133444432 2344478888777743
No 126
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.50 E-value=3.3e-13 Score=150.44 Aligned_cols=199 Identities=11% Similarity=0.137 Sum_probs=128.6
Q ss_pred CCCCCcc-cchH--HHHHHHHHhccC--CCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccccc
Q 002012 266 GKLDPVI-GRDD--EIRRCIQILSRR--TKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGT 340 (982)
Q Consensus 266 ~~l~~li-G~~~--~i~~l~~~L~~~--~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~ 340 (982)
.+|++++ |+.+ ....+..++... ..++++|+||||||||++|+++++.+... +.+++.+++..+...
T Consensus 8 ~~f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~-------~~~~~~i~~~~~~~~- 79 (324)
T 1l8q_A 8 YTLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR-------GYRVIYSSADDFAQA- 79 (324)
T ss_dssp CCSSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT-------TCCEEEEEHHHHHHH-
T ss_pred CCcccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC-------CCEEEEEEHHHHHHH-
Confidence 3677776 6444 334444444333 34689999999999999999999988543 578888887665421
Q ss_pred cccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCCCeEEEEecCchhHhhhhhcChHH
Q 002012 341 CYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRGELRCIGATTLNEYRNYIEKDPAL 420 (982)
Q Consensus 341 ~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g~i~vI~at~~~~~~~~~~~d~al 420 (982)
+.+.........+.... ..+.||||||+|.+.+.. .....+...+....+.+...+|+++++.. ....++++|
T Consensus 80 -~~~~~~~~~~~~~~~~~--~~~~vL~iDEi~~l~~~~--~~~~~l~~~l~~~~~~~~~iii~~~~~~~--~l~~l~~~L 152 (324)
T 1l8q_A 80 -MVEHLKKGTINEFRNMY--KSVDLLLLDDVQFLSGKE--RTQIEFFHIFNTLYLLEKQIILASDRHPQ--KLDGVSDRL 152 (324)
T ss_dssp -HHHHHHHTCHHHHHHHH--HTCSEEEEECGGGGTTCH--HHHHHHHHHHHHHHHTTCEEEEEESSCGG--GCTTSCHHH
T ss_pred -HHHHHHcCcHHHHHHHh--cCCCEEEEcCcccccCCh--HHHHHHHHHHHHHHHCCCeEEEEecCChH--HHHHhhhHh
Confidence 11221111111121111 124599999999986321 11233444454455566666666554443 223579999
Q ss_pred Hhcc---ceEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCCcchhhHHHHHHHHH
Q 002012 421 ERRF---QQVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLPDKAIDLVDEAAAK 491 (982)
Q Consensus 421 ~rRf---~~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~p~~a~~lld~a~~~ 491 (982)
.+|| ..+.+++ +.+++..|++..+.. .++.++++++..++..+ +.+ +.+..+++.++..
T Consensus 153 ~sR~~~~~~i~l~~-~~~e~~~il~~~~~~----~~~~l~~~~l~~l~~~~-g~~------r~l~~~l~~~~~~ 214 (324)
T 1l8q_A 153 VSRFEGGILVEIEL-DNKTRFKIIKEKLKE----FNLELRKEVIDYLLENT-KNV------REIEGKIKLIKLK 214 (324)
T ss_dssp HHHHHTSEEEECCC-CHHHHHHHHHHHHHH----TTCCCCHHHHHHHHHHC-SSH------HHHHHHHHHHHHH
T ss_pred hhcccCceEEEeCC-CHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHhC-CCH------HHHHHHHHHHHHc
Confidence 9999 5788888 999999999887765 57889999999998886 433 5566666665544
No 127
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.49 E-value=9.6e-14 Score=167.72 Aligned_cols=223 Identities=18% Similarity=0.212 Sum_probs=141.7
Q ss_pred hcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEecccccc-------
Q 002012 662 HKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYME------- 734 (982)
Q Consensus 662 ~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~------- 734 (982)
+..++||+.+++.+..++... .+++|+||||||||++|++|+..+.......+.+++.....
T Consensus 40 l~~i~G~~~~l~~l~~~i~~g-----------~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~ 108 (604)
T 3k1j_A 40 IDQVIGQEHAVEVIKTAANQK-----------RHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKT 108 (604)
T ss_dssp HHHCCSCHHHHHHHHHHHHTT-----------CCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEE
T ss_pred cceEECchhhHhhccccccCC-----------CEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEE
Confidence 377999999999888887621 14999999999999999999998854332333333222110
Q ss_pred -------------------------------------------------------ccccccccCCCC---Cccccc----
Q 002012 735 -------------------------------------------------------KHSVSRLVGAPP---GYVGYE---- 752 (982)
Q Consensus 735 -------------------------------------------------------~~~~~~l~g~~~---g~vg~~---- 752 (982)
......++|.-. ...|..
T Consensus 109 ~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~~g~~~~g~ 188 (604)
T 3k1j_A 109 VPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQSGGLGTPA 188 (604)
T ss_dssp EETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC----CCCCG
T ss_pred EecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhhcCCccccc
Confidence 001112232110 000000
Q ss_pred cCCchhHHHhhCCCeEEEEccccccCHHHHHHHHHhhhcCceecCCC----------cEEecccEEEEEecCCChHHHHH
Q 002012 753 EGGQLTEVVRRRPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQG----------RTVSFTNCVVIMTSNIGSHYILE 822 (982)
Q Consensus 753 ~~~~l~~~l~~~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g----------~~~~~~~~iiI~tsn~~~~~i~~ 822 (982)
........+..+.+++|||||++.+++.+++.|+++|+++.+....+ ......+++||+|||....
T Consensus 189 ~~~i~~g~~~~a~~gvL~LDEi~~l~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~~---- 264 (604)
T 3k1j_A 189 HERVEPGMIHRAHKGVLFIDEIATLSLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDTV---- 264 (604)
T ss_dssp GGGEECCHHHHTTTSEEEETTGGGSCHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHHHH----
T ss_pred cccccCceeeecCCCEEEEechhhCCHHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHHHH----
Confidence 00012335566778899999999999999999999999998765322 1122357899999996311
Q ss_pred hhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccc---cccccCCCChhHHHHHHHHHHHHHHHHHHhCCCCccCCHH
Q 002012 823 TLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRID---EYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKE 899 (982)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid---~ii~F~pl~~~~l~~il~~~l~~~~~~~~~~~~~l~i~~~ 899 (982)
..|+|+|++||+ ..++|++... +....+..++..+.+.+...+....++++
T Consensus 265 -------------------------~~l~~~l~~R~~v~~i~i~l~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~ls~e 318 (604)
T 3k1j_A 265 -------------------------DKMHPALRSRIRGYGYEVYMRTTMP-DTIENRRKLVQFVAQEVKRDGKIPHFTKE 318 (604)
T ss_dssp -------------------------HHSCHHHHHHHHHHSEEEECCSEEE-CCHHHHHHHHHHHHHHHHHHCSSCCBBHH
T ss_pred -------------------------hhcCHHHHHHhhccceEeecccccc-CCHHHHHHHHHHHHHHHhhccCcccCCHH
Confidence 128999999996 3566655433 33344444455555555544455689999
Q ss_pred HHHHHHhcCC--CCC-----CCchHHHHHHHHH
Q 002012 900 AVTLLGILGF--DPN-----FGARPVKRVIQQL 925 (982)
Q Consensus 900 a~~~L~~~~~--~~~-----~gaR~L~~~i~~~ 925 (982)
+++.|..+.+ .+. ...|.+.++++..
T Consensus 319 Al~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A 351 (604)
T 3k1j_A 319 AVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAA 351 (604)
T ss_dssp HHHHHHHHHHHTTCSTTEEECCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhccccccccCHHHHHHHHHHH
Confidence 9999998643 332 1468888777653
No 128
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.49 E-value=6.5e-13 Score=151.18 Aligned_cols=211 Identities=20% Similarity=0.281 Sum_probs=146.5
Q ss_pred CCCcccchHHHHHHHHHhcc----CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEeccccccc----
Q 002012 268 LDPVIGRDDEIRRCIQILSR----RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAG---- 339 (982)
Q Consensus 268 l~~liG~~~~i~~l~~~L~~----~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~---- 339 (982)
+++++|++++++.+.+.+.. ....+++|+||||||||++++.+++.+..... .+..++.+++......
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~----~~~~~~~i~~~~~~~~~~~~ 94 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFL----GKFKHVYINTRQIDTPYRVL 94 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTC----SSCEEEEEEHHHHCSHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhc----CCceEEEEECCCCCCHHHHH
Confidence 46789999999999988763 45668999999999999999999998743210 0467788886432210
Q ss_pred ----------cccccc-HHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhh---cCCCeEEEEec
Q 002012 340 ----------TCYRGD-FEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPML---GRGELRCIGAT 405 (982)
Q Consensus 340 ----------~~~~g~-~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~l---e~g~i~vI~at 405 (982)
....|. .......++..+...+.+.||||||++.+..... .+....|...+ ...++.+|++|
T Consensus 95 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~----~~~l~~l~~~~~~~~~~~~~~I~~~ 170 (386)
T 2qby_A 95 ADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYN----DDILYKLSRINSEVNKSKISFIGIT 170 (386)
T ss_dssp HHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSC----STHHHHHHHHHHSCCC--EEEEEEE
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCc----CHHHHHHhhchhhcCCCeEEEEEEE
Confidence 001121 3333445555555444588999999999975431 23444555555 45689999999
Q ss_pred CchhHhhhhhcChHHHhcc--ceEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCCcchhhH
Q 002012 406 TLNEYRNYIEKDPALERRF--QQVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLPDKAID 483 (982)
Q Consensus 406 ~~~~~~~~~~~d~al~rRf--~~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~p~~a~~ 483 (982)
+..++.. .+++.+.+|| ..+.+++++.+++..+++...... .....++++++..++.++.. ....|..+++
T Consensus 171 ~~~~~~~--~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~--~~~~~~~~~~~~~l~~~~~~---~~G~~r~~~~ 243 (386)
T 2qby_A 171 NDVKFVD--LLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMA--FKPGVLPDNVIKLCAALAAR---EHGDARRALD 243 (386)
T ss_dssp SCGGGGG--GCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHH--BCSSCSCHHHHHHHHHHHHH---TTCCHHHHHH
T ss_pred CCCChHh--hhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhh--ccCCCCCHHHHHHHHHHHHH---hcCCHHHHHH
Confidence 9876432 4688999999 589999999999999998766532 12467899999999988762 1234678888
Q ss_pred HHHHHHHHhh
Q 002012 484 LVDEAAAKLK 493 (982)
Q Consensus 484 lld~a~~~~~ 493 (982)
+++.++..+.
T Consensus 244 ll~~a~~~a~ 253 (386)
T 2qby_A 244 LLRVSGEIAE 253 (386)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888775544
No 129
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.49 E-value=3e-14 Score=154.76 Aligned_cols=197 Identities=18% Similarity=0.273 Sum_probs=127.9
Q ss_pred hhcccccchHHHHHHHHH----HHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEecccccccc
Q 002012 661 LHKRVIGQDIAVKSVADA----IRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKH 736 (982)
Q Consensus 661 l~~~iiGq~~a~~~l~~~----i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~ 736 (982)
+...++|++.+++.+... +...... ...+..++||+||||||||++|+++|+.+ +.+++.+++++.
T Consensus 31 ~~~~~i~~~~~~~~i~~~~~~l~~~l~~~---~~~~~~~vLl~G~~GtGKT~la~~ia~~~---~~~~~~i~~~~~---- 100 (272)
T 1d2n_A 31 IMNGIIKWGDPVTRVLDDGELLVQQTKNS---DRTPLVSVLLEGPPHSGKTALAAKIAEES---NFPFIKICSPDK---- 100 (272)
T ss_dssp CTTCCCCCSHHHHHHHHHHHHHHHHHHHC---SSCSEEEEEEECSTTSSHHHHHHHHHHHH---TCSEEEEECGGG----
T ss_pred HhcCCCCccHHHHHHHHHHHHHHHHHhcc---CCCCCeEEEEECCCCCcHHHHHHHHHHHh---CCCEEEEeCHHH----
Confidence 346788998888777764 2222211 12344579999999999999999999987 678999988752
Q ss_pred ccccccCCCCCccccccCCchhHHHhhCCCeEEEEcccccc----------CHHHHHHHHHhhhcCceecCCCcEEeccc
Q 002012 737 SVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEIEKA----------HQDVFNILLQLLDDGRITDSQGRTVSFTN 806 (982)
Q Consensus 737 ~~~~l~g~~~g~vg~~~~~~l~~~l~~~~~~Vl~lDEidkl----------~~~~~~~Ll~~le~g~~~d~~g~~~~~~~ 806 (982)
++|...+. .......+++.....+++||||||||.+ ...+++.|...++... + ...+
T Consensus 101 ----~~g~~~~~-~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~---~-----~~~~ 167 (272)
T 1d2n_A 101 ----MIGFSETA-KCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAP---P-----QGRK 167 (272)
T ss_dssp ----CTTCCHHH-HHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCC---S-----TTCE
T ss_pred ----hcCCchHH-HHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCcc---C-----CCCC
Confidence 22221100 0000112334444567899999999997 5567777777766311 0 1135
Q ss_pred EEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcCh-HHHhccccccccCCCCh-hHHHHHHHHHHHHHH
Q 002012 807 CVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRP-EFLNRIDEYIVFQPLDS-KEISKIVEIQMNRVK 884 (982)
Q Consensus 807 ~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p-~ll~Rid~ii~F~pl~~-~~l~~il~~~l~~~~ 884 (982)
++||+|||.... +.+ .+.+||+..|.|+|++. +++..++...
T Consensus 168 ~~ii~ttn~~~~-------------------------------l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~----- 211 (272)
T 1d2n_A 168 LLIIGTTSRKDV-------------------------------LQEMEMLNAFSTTIHVPNIATGEQLLEALELL----- 211 (272)
T ss_dssp EEEEEEESCHHH-------------------------------HHHTTCTTTSSEEEECCCEEEHHHHHHHHHHH-----
T ss_pred EEEEEecCChhh-------------------------------cchhhhhcccceEEcCCCccHHHHHHHHHHhc-----
Confidence 788999986421 122 45688888899999987 6666665431
Q ss_pred HHHHhCCCCccCCHHHHHHHHhc--CCCCCCCchHHHHHHHHH
Q 002012 885 DRLKQKKIDLHYTKEAVTLLGIL--GFDPNFGARPVKRVIQQL 925 (982)
Q Consensus 885 ~~~~~~~~~l~i~~~a~~~L~~~--~~~~~~gaR~L~~~i~~~ 925 (982)
..+++++++.|+.. +|++..++|.+.++++..
T Consensus 212 ---------~~~~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a 245 (272)
T 1d2n_A 212 ---------GNFKDKERTTIAQQVKGKKVWIGIKKLLMLIEMS 245 (272)
T ss_dssp ---------TCSCHHHHHHHHHHHTTSEEEECHHHHHHHHHHH
T ss_pred ---------CCCCHHHHHHHHHHhcCCCccccHHHHHHHHHHH
Confidence 24688888888864 333333678888888864
No 130
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.49 E-value=5e-14 Score=158.64 Aligned_cols=214 Identities=18% Similarity=0.228 Sum_probs=132.6
Q ss_pred hcCCCCCcccchHHHHHHHHHhccCCCCCcEEeCCCCCcHHHHHHHHHHHhhcC----CCCCC-------CC--------
Q 002012 264 RSGKLDPVIGRDDEIRRCIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRG----DVPET-------LQ-------- 324 (982)
Q Consensus 264 ~~~~l~~liG~~~~i~~l~~~L~~~~~~~iLL~GppGvGKT~la~~la~~l~~~----~~p~~-------l~-------- 324 (982)
++..|++++|+++.++.+...+......++||+||||||||++|+++++.+... ..|.. +.
T Consensus 19 ~~~~f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (350)
T 1g8p_A 19 PVFPFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLSTN 98 (350)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTCCCSCCC
T ss_pred CCCCchhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCccccccccccccccccccccchhhhhccc
Confidence 456788999999876665544444455689999999999999999999987420 01100 00
Q ss_pred ----CCeEEEEecccccccccccccHHHHHHHHHHH---------HHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHH
Q 002012 325 ----NRKLISLDMASLVAGTCYRGDFEKRLKAVLKE---------VTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLK 391 (982)
Q Consensus 325 ----~~~v~~l~~~~l~~~~~~~g~~e~~l~~l~~~---------~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~ 391 (982)
...++.+..+... ....|... +...+.. +.. ..+.||||||++.+. .+.++.|+
T Consensus 99 ~~~~~~~~~~~~~~~~~--~~l~g~~~--~~~~~~~~~~~~~~g~~~~-a~~~vl~iDEi~~l~--------~~~~~~Ll 165 (350)
T 1g8p_A 99 VIRKPTPVVDLPLGVSE--DRVVGALD--IERAISKGEKAFEPGLLAR-ANRGYLYIDECNLLE--------DHIVDLLL 165 (350)
T ss_dssp EEEECCCEEEECTTCCH--HHHHCEEC--HHHHHHHCGGGEECCHHHH-HTTEEEEETTGGGSC--------HHHHHHHH
T ss_pred cccCCCcccccCCCcch--hhheeech--hhhhhcCCceeecCceeee-cCCCEEEEeChhhCC--------HHHHHHHH
Confidence 0112222111000 00011000 0011110 011 124699999999985 56677888
Q ss_pred hhhcCC---------------CeEEEEecCchhHhhhhhcChHHHhccc-eEEecCC-CHHHHHHHHHHHHH--------
Q 002012 392 PMLGRG---------------ELRCIGATTLNEYRNYIEKDPALERRFQ-QVFCDQP-SVENTISILRGLRE-------- 446 (982)
Q Consensus 392 ~~le~g---------------~i~vI~at~~~~~~~~~~~d~al~rRf~-~i~i~~P-s~~e~~~IL~~~~~-------- 446 (982)
..++.+ ++.+|++||+.+ ..++++|.+||. .+.++.| +.++...|++....
T Consensus 166 ~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~----~~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~~~~~~~~~~~~ 241 (350)
T 1g8p_A 166 DVAQSGENVVERDGLSIRHPARFVLVGSGNPEE----GDLRPQLLDRFGLSVEVLSPRDVETRVEVIRRRDTYDADPKAF 241 (350)
T ss_dssp HHHHHSEEEECCTTCCEEEECCEEEEEEECSCS----CCCCHHHHTTCSEEEECCCCCSHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHhcCceEEEecceEEeeCCceEEEEEeCCCC----CCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHHHhcccCchhh
Confidence 888754 689999999744 258999999998 4899999 46666688755211
Q ss_pred -------------HH----hhhcCCccChHHHHHHHHHhhhhhccCCCcchhhHHHHHHHHHhhhhc
Q 002012 447 -------------RY----ELHHGVKISDSALVSAAVLADRYITERFLPDKAIDLVDEAAAKLKMEI 496 (982)
Q Consensus 447 -------------~~----~~~~~v~i~~~~l~~~~~~s~r~i~~~~~p~~a~~lld~a~~~~~~~~ 496 (982)
.. ....++.++++++..++.++.+.- ...++.+..+++.|...+....
T Consensus 242 ~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~--~~~~R~~~~ll~~a~~~A~~~~ 306 (350)
T 1g8p_A 242 LEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALG--SDGLRGELTLLRSARALAALEG 306 (350)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSS--SCSHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhC--CCCccHHHHHHHHHHHHHHHcC
Confidence 00 112356899999999998876421 1145778888888877665543
No 131
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.48 E-value=1e-12 Score=149.99 Aligned_cols=207 Identities=14% Similarity=0.126 Sum_probs=145.7
Q ss_pred CCcccchHHHHHHHHHhcc----CCCC--CcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccccc--
Q 002012 269 DPVIGRDDEIRRCIQILSR----RTKN--NPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGT-- 340 (982)
Q Consensus 269 ~~liG~~~~i~~l~~~L~~----~~~~--~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~-- 340 (982)
++++|++++++.+...+.. .... +++|+||||||||++++.+++.+.... +..++.+++.......
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~------~~~~~~i~~~~~~~~~~~ 90 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT------TARFVYINGFIYRNFTAI 90 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC------CCEEEEEETTTCCSHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc------CeeEEEEeCccCCCHHHH
Confidence 6799999999999888765 3334 799999999999999999999884321 4678888865433210
Q ss_pred ------------cccc-cHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcC------CCeEE
Q 002012 341 ------------CYRG-DFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGR------GELRC 401 (982)
Q Consensus 341 ------------~~~g-~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~------g~i~v 401 (982)
...| .....+..+...+...+++.||||||+|.+. .+..+.|...++. .++.+
T Consensus 91 ~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~--------~~~~~~L~~~~~~~~~~~~~~~~i 162 (389)
T 1fnn_A 91 IGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLA--------PDILSTFIRLGQEADKLGAFRIAL 162 (389)
T ss_dssp HHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSC--------HHHHHHHHHHTTCHHHHSSCCEEE
T ss_pred HHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccc--------hHHHHHHHHHHHhCCCCCcCCEEE
Confidence 0011 1222233333334444567899999999982 4566667776642 58999
Q ss_pred EEecCchhHhhhhhcChHHHhccc--eEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhc---cCC
Q 002012 402 IGATTLNEYRNYIEKDPALERRFQ--QVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYIT---ERF 476 (982)
Q Consensus 402 I~at~~~~~~~~~~~d~al~rRf~--~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~---~~~ 476 (982)
|++|+..++.. .+++.+.+||. .+.+++++.+++..+++....... ....++++++..++..+.++.. ...
T Consensus 163 I~~~~~~~~~~--~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~G 238 (389)
T 1fnn_A 163 VIVGHNDAVLN--NLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGL--AEGSYSEDILQMIADITGAQTPLDTNRG 238 (389)
T ss_dssp EEEESSTHHHH--TSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHB--CTTSSCHHHHHHHHHHHSBSSTTCTTSC
T ss_pred EEEECCchHHH--HhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhc--CCCCCCHHHHHHHHHHHhhcccCCCCCC
Confidence 99988875433 46899999996 699999999999999987665421 2347899999999998743210 024
Q ss_pred CcchhhHHHHHHHHHhh
Q 002012 477 LPDKAIDLVDEAAAKLK 493 (982)
Q Consensus 477 ~p~~a~~lld~a~~~~~ 493 (982)
.|..+.++++.+...+.
T Consensus 239 ~~r~~~~~l~~a~~~a~ 255 (389)
T 1fnn_A 239 DARLAIDILYRSAYAAQ 255 (389)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 56788899888876554
No 132
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.48 E-value=3.9e-13 Score=149.28 Aligned_cols=185 Identities=12% Similarity=0.188 Sum_probs=132.2
Q ss_pred hcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCC--CceEEEeccccccccccc
Q 002012 662 HKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTE--NALVRIDMSEYMEKHSVS 739 (982)
Q Consensus 662 ~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~--~~~v~i~~s~~~~~~~~~ 739 (982)
+..++|++.+++.+...+.. .+. .+++|+||+|+|||++|+.+++.+.+.+ ..++.+++++.....
T Consensus 20 ~~~~~g~~~~~~~l~~~l~~--------~~~-~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~--- 87 (323)
T 1sxj_B 20 LSDIVGNKETIDRLQQIAKD--------GNM-PHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGID--- 87 (323)
T ss_dssp GGGCCSCTHHHHHHHHHHHS--------CCC-CCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHH---
T ss_pred HHHHHCCHHHHHHHHHHHHc--------CCC-CeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChH---
Confidence 36799999999999888762 122 2499999999999999999999874322 345666665421110
Q ss_pred cccCCCCCccccccCCchhHHHh-------hCCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEEe
Q 002012 740 RLVGAPPGYVGYEEGGQLTEVVR-------RRPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMT 812 (982)
Q Consensus 740 ~l~g~~~g~vg~~~~~~l~~~l~-------~~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~t 812 (982)
....+.+.+. ...+.||+|||+|.++...++.|++++++.. .+++||++
T Consensus 88 -------------~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~-----------~~~~~il~ 143 (323)
T 1sxj_B 88 -------------VVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYS-----------NSTRFAFA 143 (323)
T ss_dssp -------------HHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTT-----------TTEEEEEE
T ss_pred -------------HHHHHHHHHHhccccCCCCCceEEEEECcccCCHHHHHHHHHHHhccC-----------CCceEEEE
Confidence 0111222222 2236799999999999999999999998632 35788888
Q ss_pred cCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHHHHHHHHHhCCC
Q 002012 813 SNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKI 892 (982)
Q Consensus 813 sn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~~~~~~~~~~ 892 (982)
||... .+.+.+.+|+. .+.|+|++.+++.+++...+.. .+
T Consensus 144 ~~~~~-------------------------------~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~-------~~- 183 (323)
T 1sxj_B 144 CNQSN-------------------------------KIIEPLQSQCA-ILRYSKLSDEDVLKRLLQIIKL-------ED- 183 (323)
T ss_dssp ESCGG-------------------------------GSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHH-------HT-
T ss_pred eCChh-------------------------------hchhHHHhhce-EEeecCCCHHHHHHHHHHHHHH-------cC-
Confidence 87532 16788999995 8999999999999998877654 23
Q ss_pred CccCCHHHHHHHHhcCCCCCCCchHHHHHHHHHH
Q 002012 893 DLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLV 926 (982)
Q Consensus 893 ~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~l 926 (982)
+.+++++++.|+..+ .+ ..|.+.+.++...
T Consensus 184 -~~~~~~~~~~l~~~~-~G--~~r~a~~~l~~~~ 213 (323)
T 1sxj_B 184 -VKYTNDGLEAIIFTA-EG--DMRQAINNLQSTV 213 (323)
T ss_dssp -CCBCHHHHHHHHHHH-TT--CHHHHHHHHHHHH
T ss_pred -CCCCHHHHHHHHHHc-CC--CHHHHHHHHHHHH
Confidence 568999999998863 22 3466666666543
No 133
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.46 E-value=1.9e-14 Score=172.57 Aligned_cols=236 Identities=13% Similarity=0.120 Sum_probs=140.9
Q ss_pred HHHHHHhhhcccccchHHHHHHHHHHHHHhcCCC------CCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEE
Q 002012 654 LVMLEEVLHKRVIGQDIAVKSVADAIRRSRAGLS------DPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRI 727 (982)
Q Consensus 654 l~~l~~~l~~~iiGq~~a~~~l~~~i~~~~~g~~------~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i 727 (982)
+..+.+.+...|+||+.+++.+..++. +.. ...++..++||+||||||||++|+++|+.+. ..+...
T Consensus 286 ~~~l~~~l~~~I~G~e~vk~al~~~l~----~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~---r~~~~~ 358 (595)
T 3f9v_A 286 RDRIISSIAPSIYGHWELKEALALALF----GGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAP---RAVYTT 358 (595)
T ss_dssp GGTHHHHTSSTTSCCHHHHHHHTTTTT----CCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCS---CEECCC
T ss_pred HHHHHHhhcchhcChHHHHHHHHHHHh----CCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCC---CceecC
Confidence 345667788999999998777644332 211 0112223699999999999999999998872 221111
Q ss_pred ----eccccccccccccccCCCCCccccccCCchhHHHhhCCCeEEEEccccccCHHHHHHHHHhhhcCceec-CCCcEE
Q 002012 728 ----DMSEYMEKHSVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEIEKAHQDVFNILLQLLDDGRITD-SQGRTV 802 (982)
Q Consensus 728 ----~~s~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d-~~g~~~ 802 (982)
++..+... ..... ..|.. ..-.+.+..+.++|+||||||+++++.++.|+++||++.++. ..|...
T Consensus 359 ~~~~~~~~l~~~-----~~~~~--~~g~~--~~~~G~l~~A~~gil~IDEid~l~~~~q~~Ll~~le~~~i~i~~~g~~~ 429 (595)
T 3f9v_A 359 GKGSTAAGLTAA-----VVREK--GTGEY--YLEAGALVLADGGIAVIDEIDKMRDEDRVAIHEAMEQQTVSIAKAGIVA 429 (595)
T ss_dssp TTCSTTTTSEEE-----CSSGG--GTSSC--SEEECHHHHHSSSEECCTTTTCCCSHHHHHHHHHHHSSSEEEESSSSEE
T ss_pred CCccccccccce-----eeecc--ccccc--cccCCeeEecCCCcEEeehhhhCCHhHhhhhHHHHhCCEEEEecCCcEE
Confidence 11111110 00000 00100 011224445567899999999999999999999999999874 335444
Q ss_pred ec-ccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHH
Q 002012 803 SF-TNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMN 881 (982)
Q Consensus 803 ~~-~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~ 881 (982)
.+ .++.||+|+|......... ..... .-.++++|++|||.++.+.++...+...|++..+.
T Consensus 430 ~~~~~~~vIaatNp~~G~~~~~---~~~~~---------------ni~l~~aLl~RFDl~~~~~~~~~~e~~~i~~~il~ 491 (595)
T 3f9v_A 430 KLNARAAVIAAGNPKFGRYISE---RPVSD---------------NINLPPTILSRFDLIFILKDQPGEQDRELANYILD 491 (595)
T ss_dssp EECCCCEEEEEECCTTCCSCTT---SCSCT---------------TTCSCSSSGGGCSCCEEECCTTHHHHHHHHHHHHT
T ss_pred EecCceEEEEEcCCcCCccCcc---cCchh---------------ccCCCHHHHhhCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 44 7899999999753110000 00000 01378999999998777777766554555554432
Q ss_pred -----------------HHHHHHHhCCCCccCCHHHHHHHHhcCC------------CCCCCchHHHHHHHH
Q 002012 882 -----------------RVKDRLKQKKIDLHYTKEAVTLLGILGF------------DPNFGARPVKRVIQQ 924 (982)
Q Consensus 882 -----------------~~~~~~~~~~~~l~i~~~a~~~L~~~~~------------~~~~gaR~L~~~i~~ 924 (982)
++....+. .+...+++++.+.|..+-. ....++|.+.++++-
T Consensus 492 ~~~~~~~~~~l~~~~l~~~i~~ar~-~~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirl 562 (595)
T 3f9v_A 492 VHSGKSTKNIIDIDTLRKYIAYARK-YVTPKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRI 562 (595)
T ss_dssp TTCCCSSSSTTCCTTTHHHHHHHHH-HHCCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHH
T ss_pred HhhccccccCCCHHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHH
Confidence 12111111 1234678888888776510 234568988888875
No 134
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.45 E-value=9.5e-13 Score=153.68 Aligned_cols=102 Identities=25% Similarity=0.381 Sum_probs=73.2
Q ss_pred eEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHH
Q 002012 767 SVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELA 846 (982)
Q Consensus 767 ~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 846 (982)
+|+||||+|.+++++++.|++.||+.. .+ +||++||.+...+... .....
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~-----------~~-~~il~tn~~~~~i~~~--~~~~~---------------- 346 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSI-----------AP-IVIFASNRGNCVIRGT--EDITS---------------- 346 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTT-----------CC-EEEEEECCSEEECBTT--SSCEE----------------
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccC-----------CC-EEEEecCCcccccccc--ccccc----------------
Confidence 599999999999999999999999732 34 5666665531100000 00000
Q ss_pred HhhcChHHHhccccccccCCCChhHHHHHHHHHHHHHHHHHHhCCCCccCCHHHHHHHHhcC
Q 002012 847 RQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILG 908 (982)
Q Consensus 847 ~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~~~~~~~~~~~l~i~~~a~~~L~~~~ 908 (982)
...++|++++||. ++.|+|++.+++.+++...+.. .+ +.++++++++++..+
T Consensus 347 ~~~l~~~i~sR~~-~~~~~~~~~~e~~~iL~~~~~~-------~~--~~~~~~~~~~i~~~a 398 (456)
T 2c9o_A 347 PHGIPLDLLDRVM-IIRTMLYTPQEMKQIIKIRAQT-------EG--INISEEALNHLGEIG 398 (456)
T ss_dssp ETTCCHHHHTTEE-EEECCCCCHHHHHHHHHHHHHH-------HT--CCBCHHHHHHHHHHH
T ss_pred cccCChhHHhhcc-eeeCCCCCHHHHHHHHHHHHHH-------hC--CCCCHHHHHHHHHHc
Confidence 0237889999995 5799999999999999888753 23 569999999998863
No 135
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.44 E-value=2e-12 Score=146.70 Aligned_cols=200 Identities=20% Similarity=0.287 Sum_probs=131.7
Q ss_pred hcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccc-----c
Q 002012 662 HKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEK-----H 736 (982)
Q Consensus 662 ~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~-----~ 736 (982)
+..++||+.+++.+...+...+ .+ ..++|+||+|||||++|+.+++.+.+.. ......|..+... .
T Consensus 15 ~~~~vg~~~~~~~L~~~l~~~~-------~~-~~~ll~G~~G~GKT~la~~la~~l~~~~-~~~~~~~~~~~~~~~~~~~ 85 (373)
T 1jr3_A 15 FADVVGQEHVLTALANGLSLGR-------IH-HAYLFSGTRGVGKTSIARLLAKGLNCET-GITATPCGVCDNCREIEQG 85 (373)
T ss_dssp TTTSCSCHHHHHHHHHHHHHTC-------CC-SEEEEESCTTSSHHHHHHHHHHHHSCTT-CSCSSCCSSSHHHHHHHTS
T ss_pred hhhccCcHHHHHHHHHHHHhCC-------CC-eEEEEECCCCCCHHHHHHHHHHHhCCCC-CCCCCCCcccHHHHHHhcc
Confidence 3679999999999999887431 11 2489999999999999999999884322 1111112211100 0
Q ss_pred ccccccCC-CCCccccccCCchhHHHhh----CCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEE
Q 002012 737 SVSRLVGA-PPGYVGYEEGGQLTEVVRR----RPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIM 811 (982)
Q Consensus 737 ~~~~l~g~-~~g~vg~~~~~~l~~~l~~----~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~ 811 (982)
....++.. ..+..+....+.+.+.+.. ..+.||+|||+|.++...++.|++.+++. ..+++||+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~-----------~~~~~~Il 154 (373)
T 1jr3_A 86 RFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEP-----------PEHVKFLL 154 (373)
T ss_dssp CCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSC-----------CSSEEEEE
T ss_pred CCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcC-----------CCceEEEE
Confidence 00011100 0011111111223333332 23579999999999999999999999862 13688888
Q ss_pred ecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHHHHHHHHHhCC
Q 002012 812 TSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKK 891 (982)
Q Consensus 812 tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~~~~~~~~~ 891 (982)
+++.... +.+.+.+|+ ..+.|.|++.+++.+++...+.. .+
T Consensus 155 ~~~~~~~-------------------------------l~~~l~sr~-~~i~~~~l~~~~~~~~l~~~~~~-------~~ 195 (373)
T 1jr3_A 155 ATTDPQK-------------------------------LPVTILSRC-LQFHLKALDVEQIRHQLEHILNE-------EH 195 (373)
T ss_dssp EESCGGG-------------------------------SCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHH-------HT
T ss_pred EeCChHh-------------------------------CcHHHHhhe-eEeeCCCCCHHHHHHHHHHHHHH-------cC
Confidence 8874321 677888998 68999999999999999887764 23
Q ss_pred CCccCCHHHHHHHHhcCCCCCCCchHHHHHHHHH
Q 002012 892 IDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQL 925 (982)
Q Consensus 892 ~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~ 925 (982)
+.+++++++.|+..+ .+ +.|.+.+.+++.
T Consensus 196 --~~~~~~a~~~l~~~~-~G--~~r~~~~~l~~~ 224 (373)
T 1jr3_A 196 --IAHEPRALQLLARAA-EG--SLRDALSLTDQA 224 (373)
T ss_dssp --CCBCHHHHHHHHHHS-SS--CHHHHHHHHHHH
T ss_pred --CCCCHHHHHHHHHHC-CC--CHHHHHHHHHHH
Confidence 568999999998864 22 346666666653
No 136
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.44 E-value=1.3e-12 Score=164.22 Aligned_cols=183 Identities=21% Similarity=0.278 Sum_probs=130.7
Q ss_pred CCcccchHHHHHHHHHhccC---------CCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEeccccccc
Q 002012 269 DPVIGRDDEIRRCIQILSRR---------TKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAG 339 (982)
Q Consensus 269 ~~liG~~~~i~~l~~~L~~~---------~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~ 339 (982)
..++|+++.++.+...+.+. +..+++|+||||||||++|++|++.+.+. +.+++.++|+.+...
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~-------~~~~i~i~~~~~~~~ 630 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT-------EEAMIRIDMTEYMEK 630 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSS-------GGGEEEECTTTCCSS
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC-------CCcEEEEechhccch
Confidence 35899999988888776542 12478999999999999999999998553 568899998876532
Q ss_pred ----------ccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCC------------
Q 002012 340 ----------TCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRG------------ 397 (982)
Q Consensus 340 ----------~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g------------ 397 (982)
..|.|..+ ...+...+.. ..+.|||||||+.+. .++++.|+++++.|
T Consensus 631 ~~~s~l~g~~~~~~G~~~--~g~l~~~~~~-~~~~vl~lDEi~~l~--------~~~~~~Ll~~l~~~~~~~~~g~~vd~ 699 (854)
T 1qvr_A 631 HAVSRLIGAPPGYVGYEE--GGQLTEAVRR-RPYSVILFDEIEKAH--------PDVFNILLQILDDGRLTDSHGRTVDF 699 (854)
T ss_dssp GGGGGC----------------CHHHHHHH-CSSEEEEESSGGGSC--------HHHHHHHHHHHTTTEECCSSSCCEEC
T ss_pred hHHHHHcCCCCCCcCccc--cchHHHHHHh-CCCeEEEEecccccC--------HHHHHHHHHHhccCceECCCCCEecc
Confidence 11222221 0122233333 456799999999875 78899999999876
Q ss_pred -CeEEEEecCchh---------------Hhhh------hhcChHHHhccc-eEEecCCCHHHHHHHHHHHHHHHhhhc--
Q 002012 398 -ELRCIGATTLNE---------------YRNY------IEKDPALERRFQ-QVFCDQPSVENTISILRGLRERYELHH-- 452 (982)
Q Consensus 398 -~i~vI~at~~~~---------------~~~~------~~~d~al~rRf~-~i~i~~Ps~~e~~~IL~~~~~~~~~~~-- 452 (982)
++++|+|||... .... -.+.|+|.+||. .+.+.+|+.+++..|++.++.++....
T Consensus 700 ~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~ 779 (854)
T 1qvr_A 700 RNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAE 779 (854)
T ss_dssp TTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 456999999621 1111 136799999995 667777899999999988777665422
Q ss_pred ---CCccChHHHHHHHHHhh
Q 002012 453 ---GVKISDSALVSAAVLAD 469 (982)
Q Consensus 453 ---~v~i~~~~l~~~~~~s~ 469 (982)
.+.++++++..++.++.
T Consensus 780 ~~~~~~~~~~a~~~L~~~~~ 799 (854)
T 1qvr_A 780 KRISLELTEAAKDFLAERGY 799 (854)
T ss_dssp TTCEEEECHHHHHHHHHHHC
T ss_pred CCceEEECHHHHHHHHHcCC
Confidence 35799999999988754
No 137
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.44 E-value=9.5e-13 Score=146.76 Aligned_cols=172 Identities=13% Similarity=0.182 Sum_probs=120.3
Q ss_pred eEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccccccccCCCCCccccccCCchhHHHhhCCCeEEEEccc
Q 002012 695 SFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEI 774 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~~~~~Vl~lDEi 774 (982)
+++|+||||||||++|+++++.+...+.+++.+++.++.... .+.. .......+...+. ..+||||||+
T Consensus 39 ~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~-----~~~~----~~~~~~~~~~~~~--~~~vL~iDEi 107 (324)
T 1l8q_A 39 PIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAM-----VEHL----KKGTINEFRNMYK--SVDLLLLDDV 107 (324)
T ss_dssp SEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHH-----HHHH----HHTCHHHHHHHHH--TCSEEEEECG
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHH-----HHHH----HcCcHHHHHHHhc--CCCEEEEcCc
Confidence 599999999999999999999986557789999988764221 1100 0000011222332 2569999999
Q ss_pred cccCH--HHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcCh
Q 002012 775 EKAHQ--DVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRP 852 (982)
Q Consensus 775 dkl~~--~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p 852 (982)
+.+.. ..++.|+.+++.-. + .+..+|+|++.....+ ..+.+
T Consensus 108 ~~l~~~~~~~~~l~~~l~~~~--~--------~~~~iii~~~~~~~~l---------------------------~~l~~ 150 (324)
T 1l8q_A 108 QFLSGKERTQIEFFHIFNTLY--L--------LEKQIILASDRHPQKL---------------------------DGVSD 150 (324)
T ss_dssp GGGTTCHHHHHHHHHHHHHHH--H--------TTCEEEEEESSCGGGC---------------------------TTSCH
T ss_pred ccccCChHHHHHHHHHHHHHH--H--------CCCeEEEEecCChHHH---------------------------HHhhh
Confidence 99986 67888888776311 0 1235666666544311 12788
Q ss_pred HHHhccc--cccccCCCChhHHHHHHHHHHHHHHHHHHhCCCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHHHHHH
Q 002012 853 EFLNRID--EYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVEN 928 (982)
Q Consensus 853 ~ll~Rid--~ii~F~pl~~~~l~~il~~~l~~~~~~~~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~l~~ 928 (982)
.|.+||+ .++.|+| +.+++..|+...+.. .+ +.++++++++|+.+. + +.|.+.+.++.++..
T Consensus 151 ~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~-------~~--~~l~~~~l~~l~~~~--g--~~r~l~~~l~~~~~~ 214 (324)
T 1l8q_A 151 RLVSRFEGGILVEIEL-DNKTRFKIIKEKLKE-------FN--LELRKEVIDYLLENT--K--NVREIEGKIKLIKLK 214 (324)
T ss_dssp HHHHHHHTSEEEECCC-CHHHHHHHHHHHHHH-------TT--CCCCHHHHHHHHHHC--S--SHHHHHHHHHHHHHH
T ss_pred HhhhcccCceEEEeCC-CHHHHHHHHHHHHHh-------cC--CCCCHHHHHHHHHhC--C--CHHHHHHHHHHHHHc
Confidence 9999996 5789999 999999999887753 33 679999999999975 3 468888888876654
No 138
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.44 E-value=1.2e-13 Score=151.69 Aligned_cols=243 Identities=11% Similarity=0.057 Sum_probs=155.5
Q ss_pred cccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCC-------CCceEEEeccccccc
Q 002012 663 KRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNT-------ENALVRIDMSEYMEK 735 (982)
Q Consensus 663 ~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~-------~~~~v~i~~s~~~~~ 735 (982)
+.+.|.++.+..|...+.....+. . ..+++|+||||||||++++.+++.+... ...++.+||..+.+.
T Consensus 20 ~~L~~Re~E~~~i~~~L~~~i~~~----~-~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~ 94 (318)
T 3te6_A 20 ELLKSQVEDFTRIFLPIYDSLMSS----Q-NKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGM 94 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT----C-CCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--
T ss_pred cccCCHHHHHHHHHHHHHHHhcCC----C-CCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCH
Confidence 347788888888988887765432 2 2369999999999999999999998321 235789999887654
Q ss_pred ccc-----ccccCCCCCccccccCCchhHHHh-----hCCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecc
Q 002012 736 HSV-----SRLVGAPPGYVGYEEGGQLTEVVR-----RRPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFT 805 (982)
Q Consensus 736 ~~~-----~~l~g~~~g~vg~~~~~~l~~~l~-----~~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~ 805 (982)
..+ ..+.|....+ +.. ...+...+. .....||+|||+|.+. .++.|+.+++-... +.+
T Consensus 95 ~~~~~~I~~~L~g~~~~~-~~~-~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~--------~~s 162 (318)
T 3te6_A 95 DALYEKIWFAISKENLCG-DIS-LEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWISS--------KNS 162 (318)
T ss_dssp HHHHHHHHHHHSCCC--C-CCC-HHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHC--------SSC
T ss_pred HHHHHHHHHHhcCCCCCc-hHH-HHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhcccc--------cCC
Confidence 332 1333432211 100 111222332 2345799999999998 57788877763111 124
Q ss_pred cEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccc-cccccCCCChhHHHHHHHHHHHHHH
Q 002012 806 NCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRID-EYIVFQPLDSKEISKIVEIQMNRVK 884 (982)
Q Consensus 806 ~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid-~ii~F~pl~~~~l~~il~~~l~~~~ 884 (982)
+++||+++|...-. . ..+.+.+.+|+. ..|.|+||+.+++.+|++..+..+.
T Consensus 163 ~~~vI~i~n~~d~~--~-------------------------~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~~ 215 (318)
T 3te6_A 163 KLSIICVGGHNVTI--R-------------------------EQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSLL 215 (318)
T ss_dssp CEEEEEECCSSCCC--H-------------------------HHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHHC
T ss_pred cEEEEEEecCcccc--h-------------------------hhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhhh
Confidence 68899999853210 0 013456778886 4799999999999999999998743
Q ss_pred HH-H---------------H---h-------CCCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHcCC
Q 002012 885 DR-L---------------K---Q-------KKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAILKGD 938 (982)
Q Consensus 885 ~~-~---------------~---~-------~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~l~~~la~~~l~~~ 938 (982)
.. + + . ..+.+.++++|+++++.+.-..+..+|---++++..+..+=.+++.+..
T Consensus 216 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ai~~~A~~vA~~~GD~R~Al~ilr~A~~~ae~e~~~k~~ 295 (318)
T 3te6_A 216 KPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINHKINNKITQLIAKNVANVSGSTEKAFKICEAAVEISKKDFVRKGG 295 (318)
T ss_dssp CCEEEEECTTCCEEECCCC--------CTTEEEECEECCHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccccccccccccccccccccccccccccccccccCHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHhccC
Confidence 11 0 0 0 0123468999999999852222234677777778777777766666654
Q ss_pred CCCCCEEEEEee
Q 002012 939 IKEEDSVIIDVD 950 (982)
Q Consensus 939 ~~~~~~i~v~~~ 950 (982)
.. +..+.|+.+
T Consensus 296 ~~-~~~~~i~~~ 306 (318)
T 3te6_A 296 LQ-KGKLVVSQE 306 (318)
T ss_dssp EE-TTEECCSEE
T ss_pred CC-CCcEEeeHH
Confidence 43 345555555
No 139
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.44 E-value=5.3e-13 Score=154.83 Aligned_cols=207 Identities=15% Similarity=0.197 Sum_probs=132.4
Q ss_pred CCCCcc-cchHH--HHHHHHHhccCC-CCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccccccc
Q 002012 267 KLDPVI-GRDDE--IRRCIQILSRRT-KNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGTCY 342 (982)
Q Consensus 267 ~l~~li-G~~~~--i~~l~~~L~~~~-~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~~~ 342 (982)
+|++++ |.++. ...+..+..... .++++|+||||+|||++|+++++.+.... .+.+++.+++..+... +
T Consensus 103 tfd~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~-----~~~~v~~v~~~~~~~~--~ 175 (440)
T 2z4s_A 103 TFENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNE-----PDLRVMYITSEKFLND--L 175 (440)
T ss_dssp SGGGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHC-----CSSCEEEEEHHHHHHH--H
T ss_pred ChhhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhC-----CCCeEEEeeHHHHHHH--H
Confidence 667776 65543 333344433332 57899999999999999999999885421 2667888887655321 1
Q ss_pred cccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCCCeEEEEecCchhHhhhhhcChHHHh
Q 002012 343 RGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRGELRCIGATTLNEYRNYIEKDPALER 422 (982)
Q Consensus 343 ~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g~i~vI~at~~~~~~~~~~~d~al~r 422 (982)
.+.........+.... ...+.||||||+|.+.+.. .....+...+....+.|..++|++.++.. ....+++++.+
T Consensus 176 ~~~~~~~~~~~~~~~~-~~~~~vL~IDEi~~l~~~~--~~q~~l~~~l~~l~~~~~~iIitt~~~~~--~l~~l~~~L~s 250 (440)
T 2z4s_A 176 VDSMKEGKLNEFREKY-RKKVDILLIDDVQFLIGKT--GVQTELFHTFNELHDSGKQIVICSDREPQ--KLSEFQDRLVS 250 (440)
T ss_dssp HHHHHTTCHHHHHHHH-TTTCSEEEEECGGGGSSCH--HHHHHHHHHHHHHHTTTCEEEEEESSCGG--GCSSCCHHHHH
T ss_pred HHHHHcccHHHHHHHh-cCCCCEEEEeCcccccCCh--HHHHHHHHHHHHHHHCCCeEEEEECCCHH--HHHHHHHHHHh
Confidence 1111110001111111 1145699999999986321 11123334444445566666665544333 12247899999
Q ss_pred cc---ceEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCCcchhhHHHHHHHHHhhhh
Q 002012 423 RF---QQVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLPDKAIDLVDEAAAKLKME 495 (982)
Q Consensus 423 Rf---~~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~p~~a~~lld~a~~~~~~~ 495 (982)
|| ..+.+..|+.+++..||+..+.. .++.++++++..++..+.+ .++.+..+++.+...+...
T Consensus 251 R~~~g~~i~l~~p~~e~r~~iL~~~~~~----~~~~i~~e~l~~la~~~~g------n~R~l~~~L~~~~~~a~~~ 316 (440)
T 2z4s_A 251 RFQMGLVAKLEPPDEETRKSIARKMLEI----EHGELPEEVLNFVAENVDD------NLRRLRGAIIKLLVYKETT 316 (440)
T ss_dssp HHHSSBCCBCCCCCHHHHHHHHHHHHHH----HTCCCCTTHHHHHHHHCCS------CHHHHHHHHHHHHHHHHHS
T ss_pred hccCCeEEEeCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHhcCC------CHHHHHHHHHHHHHHHHHh
Confidence 99 48899999999999999887765 5788999999999887653 3477888888887766543
No 140
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.44 E-value=1.8e-12 Score=136.86 Aligned_cols=196 Identities=18% Similarity=0.269 Sum_probs=128.1
Q ss_pred hcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccc-----c
Q 002012 662 HKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEK-----H 736 (982)
Q Consensus 662 ~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~-----~ 736 (982)
+..++|++.+++.+...+... ..+ ..++|+||+|+|||++++.+++.+.... ......|...... .
T Consensus 22 ~~~~~g~~~~~~~l~~~l~~~-------~~~-~~~ll~G~~G~GKT~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 92 (250)
T 1njg_A 22 FADVVGQEHVLTALANGLSLG-------RIH-HAYLFSGTRGVGKTSIARLLAKGLNCET-GITATPCGVCDNCREIEQG 92 (250)
T ss_dssp GGGCCSCHHHHHHHHHHHHHT-------CCC-SEEEEECSTTSCHHHHHHHHHHHHHCTT-CSCSSCCSCSHHHHHHHTT
T ss_pred HHHHhCcHHHHHHHHHHHHcC-------CCC-eEEEEECCCCCCHHHHHHHHHHHhcCCC-CCCCCCCcccHHHHHHhcc
Confidence 367999999999998888743 112 2499999999999999999999874321 1111111111000 0
Q ss_pred ccccccCCC-CCccccccCCchhHHHhh-------CCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEE
Q 002012 737 SVSRLVGAP-PGYVGYEEGGQLTEVVRR-------RPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCV 808 (982)
Q Consensus 737 ~~~~l~g~~-~g~vg~~~~~~l~~~l~~-------~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~i 808 (982)
....+++.. ..... ...+...+.. ..+.||||||+|.+++..++.|++.+++. ..+++
T Consensus 93 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~-----------~~~~~ 158 (250)
T 1njg_A 93 RFVDLIEIDAASRTK---VEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEP-----------PEHVK 158 (250)
T ss_dssp CCSSEEEEETTCGGG---HHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSC-----------CTTEE
T ss_pred CCcceEEecCccccc---HHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcC-----------CCceE
Confidence 000111100 00000 0112222222 23579999999999999999999999862 13588
Q ss_pred EEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHHHHHHHHH
Q 002012 809 VIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLK 888 (982)
Q Consensus 809 iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~~~~~~ 888 (982)
+|++||.... +.+.+.+|+ ..+.|+|++.+++.+++...+..
T Consensus 159 ~i~~t~~~~~-------------------------------~~~~l~~r~-~~i~l~~l~~~e~~~~l~~~~~~------ 200 (250)
T 1njg_A 159 FLLATTDPQK-------------------------------LPVTILSRC-LQFHLKALDVEQIRHQLEHILNE------ 200 (250)
T ss_dssp EEEEESCGGG-------------------------------SCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHH------
T ss_pred EEEEeCChHh-------------------------------CCHHHHHHh-hhccCCCCCHHHHHHHHHHHHHh------
Confidence 8898885321 567788887 68999999999999998877754
Q ss_pred hCCCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHH
Q 002012 889 QKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQ 924 (982)
Q Consensus 889 ~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~ 924 (982)
.+ +.+++++++.|.+.+ .+ ..|.+.+.+++
T Consensus 201 -~~--~~~~~~~~~~l~~~~-~G--~~~~~~~~~~~ 230 (250)
T 1njg_A 201 -EH--IAHEPRALQLLARAA-EG--SLRDALSLTDQ 230 (250)
T ss_dssp -TT--CCBCHHHHHHHHHHH-TT--CHHHHHHHHHH
T ss_pred -cC--CCCCHHHHHHHHHHc-CC--CHHHHHHHHHH
Confidence 33 678999999998864 22 34677776665
No 141
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.43 E-value=4.5e-13 Score=156.29 Aligned_cols=196 Identities=21% Similarity=0.330 Sum_probs=131.3
Q ss_pred hcccccchHHHHHHHHHHHHHhcC--CC--CCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccc
Q 002012 662 HKRVIGQDIAVKSVADAIRRSRAG--LS--DPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHS 737 (982)
Q Consensus 662 ~~~iiGq~~a~~~l~~~i~~~~~g--~~--~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~ 737 (982)
+++|+|+++++..+.+.+...... +. .-.-|. .++|+||||||||++|++||..+ +.+++.++++++...
T Consensus 30 f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~-GvLL~GppGtGKTtLaraIa~~~---~~~~i~i~g~~~~~~-- 103 (499)
T 2dhr_A 30 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPK-GVLLVGPPGVGKTHLARAVAGEA---RVPFITASGSDFVEM-- 103 (499)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCS-EEEEECSSSSSHHHHHHHHHHHT---TCCEEEEEGGGGTSS--
T ss_pred HHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCc-eEEEECCCCCCHHHHHHHHHHHh---CCCEEEEehhHHHHh--
Confidence 578999999999998887654321 00 011233 39999999999999999999987 578999999887432
Q ss_pred cccccCCCCCccccccCCchhHHHhh---CCCeEEEEccccccCH--------------HHHHHHHHhhhcCceecCCCc
Q 002012 738 VSRLVGAPPGYVGYEEGGQLTEVVRR---RPYSVVLFDEIEKAHQ--------------DVFNILLQLLDDGRITDSQGR 800 (982)
Q Consensus 738 ~~~l~g~~~g~vg~~~~~~l~~~l~~---~~~~Vl~lDEidkl~~--------------~~~~~Ll~~le~g~~~d~~g~ 800 (982)
++|... ..+...+.. ..++|+||||||.+.. ..++.|+..|+.+.-
T Consensus 104 ----------~~g~~~-~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~------ 166 (499)
T 2dhr_A 104 ----------FVGVGA-ARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK------ 166 (499)
T ss_dssp ----------CTTHHH-HHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCS------
T ss_pred ----------hhhhHH-HHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccccc------
Confidence 122111 112223332 3458999999998742 356777777775431
Q ss_pred EEecccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHh--ccccccccCCCChhHHHHHHHH
Q 002012 801 TVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLN--RIDEYIVFQPLDSKEISKIVEI 878 (982)
Q Consensus 801 ~~~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~--Rid~ii~F~pl~~~~l~~il~~ 878 (982)
...+++|+++|.+.. ++|++++ |||..|.|++++.++..+|++.
T Consensus 167 ---~~~viviAatn~p~~-------------------------------LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~ 212 (499)
T 2dhr_A 167 ---DTAIVVMAATNRPDI-------------------------------LDPALLRPGRFDRQIAIDAPDVKGREQILRI 212 (499)
T ss_dssp ---SCCCEEEECCSCGGG-------------------------------SCTTTSSTTSSCCEEECCCCCHHHHHHHHHH
T ss_pred ---CccEEEEEecCChhh-------------------------------cCcccccccccceEEecCCCCHHHHHHHHHH
Confidence 134788888886532 5667765 8999999999999999998865
Q ss_pred HHHHHHHHHHhCCCCccCCHHH-HHHHHhcCCCCCCCchHHHHHHHHHHH
Q 002012 879 QMNRVKDRLKQKKIDLHYTKEA-VTLLGILGFDPNFGARPVKRVIQQLVE 927 (982)
Q Consensus 879 ~l~~~~~~~~~~~~~l~i~~~a-~~~L~~~~~~~~~gaR~L~~~i~~~l~ 927 (982)
.++ + +.+++++ +..|+. .|+++ .+|+|+++++....
T Consensus 213 ~~~---------~--~~l~~dv~l~~lA~-~t~G~-~gadL~~lv~~Aa~ 249 (499)
T 2dhr_A 213 HAR---------G--KPLAEDVDLALLAK-RTPGF-VGADLENLLNEAAL 249 (499)
T ss_dssp TTS---------S--SCCCCSSTTHHHHT-TSCSC-CHHHHHHHHHHHHH
T ss_pred HHh---------c--CCCChHHHHHHHHH-hcCCC-CHHHHHHHHHHHHH
Confidence 432 1 3344444 455554 36554 44889999887543
No 142
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.42 E-value=8e-13 Score=150.69 Aligned_cols=209 Identities=22% Similarity=0.268 Sum_probs=140.7
Q ss_pred cccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCC--------CCceEEEeccccc-
Q 002012 663 KRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNT--------ENALVRIDMSEYM- 733 (982)
Q Consensus 663 ~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~--------~~~~v~i~~s~~~- 733 (982)
..++|++..++.+...+.....+ ..+ .+++|+||||||||++|+.+++.+... +.+++.++|....
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~----~~~-~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 94 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKN----EVK-FSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGG 94 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTT----CCC-CEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCS
T ss_pred CCCCChHHHHHHHHHHHHHHHcC----CCC-CcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCC
Confidence 78999999999999999876543 122 369999999999999999999987432 6788999988754
Q ss_pred cccc-----cccccCCCCCccccccCC---chhHHHhhCCCeEEEEccccccCHH-HHHH-HHHhhhcCceecCCCcEEe
Q 002012 734 EKHS-----VSRLVGAPPGYVGYEEGG---QLTEVVRRRPYSVVLFDEIEKAHQD-VFNI-LLQLLDDGRITDSQGRTVS 803 (982)
Q Consensus 734 ~~~~-----~~~l~g~~~g~vg~~~~~---~l~~~l~~~~~~Vl~lDEidkl~~~-~~~~-Ll~~le~g~~~d~~g~~~~ 803 (982)
.... ...+.|.+.++.|..... .+...+...+. ||||||+|.+... .++. +..+++..
T Consensus 95 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-vlilDEi~~l~~~~~~~~~l~~l~~~~----------- 162 (384)
T 2qby_B 95 TPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRA-IIYLDEVDTLVKRRGGDIVLYQLLRSD----------- 162 (384)
T ss_dssp CHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCE-EEEEETTHHHHHSTTSHHHHHHHHTSS-----------
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCC-EEEEECHHHhccCCCCceeHHHHhcCC-----------
Confidence 2221 223335544444432222 22333333333 9999999999754 2555 55555431
Q ss_pred cccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHHHH
Q 002012 804 FTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRV 883 (982)
Q Consensus 804 ~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~ 883 (982)
.+++||+|||.... ...+.+.+.+|+...+.|+|++.+++.+++...+..
T Consensus 163 -~~~~iI~~t~~~~~----------------------------~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~- 212 (384)
T 2qby_B 163 -ANISVIMISNDINV----------------------------RDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEY- 212 (384)
T ss_dssp -SCEEEEEECSSTTT----------------------------TTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHH-
T ss_pred -cceEEEEEECCCch----------------------------HhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHh-
Confidence 46899999986421 012677888998779999999999999999987753
Q ss_pred HHHHHhCCCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHH
Q 002012 884 KDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQ 924 (982)
Q Consensus 884 ~~~~~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~ 924 (982)
.-....+++++++.++..++......|.+.++++.
T Consensus 213 ------~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~ 247 (384)
T 2qby_B 213 ------GLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFR 247 (384)
T ss_dssp ------TSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred ------hcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence 11125688888888888654211234555555554
No 143
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.42 E-value=1.8e-12 Score=137.29 Aligned_cols=168 Identities=14% Similarity=0.182 Sum_probs=119.0
Q ss_pred ceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccccccccCCCCCccccccCCchhHHHhhCCCeEEEEcc
Q 002012 694 ASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDE 773 (982)
Q Consensus 694 ~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~~~~~Vl~lDE 773 (982)
.+++|+||||||||++|+.+++.+...+.+++.++++++.... .. ....+ ...+||||||
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~~--~~----------------~~~~~--~~~~vliiDe 112 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASIS--TA----------------LLEGL--EQFDLICIDD 112 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGSC--GG----------------GGTTG--GGSSEEEEET
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH--HH----------------HHHhc--cCCCEEEEec
Confidence 3599999999999999999999986656788888887764321 00 11111 2246999999
Q ss_pred ccccCHHH--HHHHHHhhhcCceecCCCcEEecccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcC
Q 002012 774 IEKAHQDV--FNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFR 851 (982)
Q Consensus 774 idkl~~~~--~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 851 (982)
++.+.... ++.|+.+++.-. . .....+|+|+|.....+ ..+.
T Consensus 113 ~~~~~~~~~~~~~l~~~l~~~~--~-------~~~~~ii~~~~~~~~~~---------------------------~~~~ 156 (242)
T 3bos_A 113 VDAVAGHPLWEEAIFDLYNRVA--E-------QKRGSLIVSASASPMEA---------------------------GFVL 156 (242)
T ss_dssp GGGGTTCHHHHHHHHHHHHHHH--H-------HCSCEEEEEESSCTTTT---------------------------TCCC
T ss_pred cccccCCHHHHHHHHHHHHHHH--H-------cCCCeEEEEcCCCHHHH---------------------------HHhh
Confidence 99997655 888888876411 0 01234777777543211 1134
Q ss_pred hHHHhccc--cccccCCCChhHHHHHHHHHHHHHHHHHHhCCCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHH
Q 002012 852 PEFLNRID--EYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENE 929 (982)
Q Consensus 852 p~ll~Rid--~ii~F~pl~~~~l~~il~~~l~~~~~~~~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~l~~~ 929 (982)
+.+.+|+. .++.|+|++.+++.+++...+.. .+ +.++++++++|... +.+ +.|.+.+.++.++..+
T Consensus 157 ~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~-------~~--~~~~~~~~~~l~~~-~~g--~~r~l~~~l~~~~~~a 224 (242)
T 3bos_A 157 PDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAM-------RG--LQLPEDVGRFLLNR-MAR--DLRTLFDVLDRLDKAS 224 (242)
T ss_dssp HHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHH-------TT--CCCCHHHHHHHHHH-TTT--CHHHHHHHHHHHHHHH
T ss_pred hhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHH-------cC--CCCCHHHHHHHHHH-ccC--CHHHHHHHHHHHHHHH
Confidence 67888886 68999999999999999887753 33 57899999999986 343 4588888888865544
No 144
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.42 E-value=2e-12 Score=144.74 Aligned_cols=177 Identities=12% Similarity=0.105 Sum_probs=115.4
Q ss_pred cccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEecccccc-----cc---
Q 002012 665 VIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYME-----KH--- 736 (982)
Q Consensus 665 iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~-----~~--- 736 (982)
..+|+++++.+..+++.. +....+||+||+|+|||++|+.+|+.+.+....- ...|..+.. ..
T Consensus 4 ~pw~~~~~~~l~~~i~~~--------~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~-~~~c~~c~~c~~~~~~~~~ 74 (334)
T 1a5t_A 4 YPWLRPDFEKLVASYQAG--------RGHHALLIQALPGMGDDALIYALSRYLLCQQPQG-HKSCGHCRGCQLMQAGTHP 74 (334)
T ss_dssp CGGGHHHHHHHHHHHHTT--------CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBT-TBCCSCSHHHHHHHHTCCT
T ss_pred CCchHHHHHHHHHHHHcC--------CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCC-CCCCCCCHHHHHHhcCCCC
Confidence 467888888888888632 2222499999999999999999999986532110 000111000 00
Q ss_pred ccccccCCC-CCccccccCCchhHHHhhC----CCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEE
Q 002012 737 SVSRLVGAP-PGYVGYEEGGQLTEVVRRR----PYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIM 811 (982)
Q Consensus 737 ~~~~l~g~~-~g~vg~~~~~~l~~~l~~~----~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~ 811 (982)
++..+.+.. ....+.++.+.+.+.+... ++.|++|||+|.++.+.+|.|++.||+. ..+++||+
T Consensus 75 d~~~~~~~~~~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep-----------~~~~~~Il 143 (334)
T 1a5t_A 75 DYYTLAPEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEP-----------PAETWFFL 143 (334)
T ss_dssp TEEEECCCTTCSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSC-----------CTTEEEEE
T ss_pred CEEEEeccccCCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCC-----------CCCeEEEE
Confidence 011111110 0122222222344444433 3689999999999999999999999972 14689999
Q ss_pred ecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHHHHHHHHHhCC
Q 002012 812 TSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKK 891 (982)
Q Consensus 812 tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~~~~~~~~~ 891 (982)
+||.... +.|++.+|| ..+.|+|++.+++.+++...+
T Consensus 144 ~t~~~~~-------------------------------l~~ti~SRc-~~~~~~~~~~~~~~~~L~~~~----------- 180 (334)
T 1a5t_A 144 ATREPER-------------------------------LLATLRSRC-RLHYLAPPPEQYAVTWLSREV----------- 180 (334)
T ss_dssp EESCGGG-------------------------------SCHHHHTTS-EEEECCCCCHHHHHHHHHHHC-----------
T ss_pred EeCChHh-------------------------------CcHHHhhcc-eeeeCCCCCHHHHHHHHHHhc-----------
Confidence 8885422 788999999 589999999999988776542
Q ss_pred CCccCCHHHHHHHHhc
Q 002012 892 IDLHYTKEAVTLLGIL 907 (982)
Q Consensus 892 ~~l~i~~~a~~~L~~~ 907 (982)
.+++++++.++..
T Consensus 181 ---~~~~~~~~~l~~~ 193 (334)
T 1a5t_A 181 ---TMSQDALLAALRL 193 (334)
T ss_dssp ---CCCHHHHHHHHHH
T ss_pred ---CCCHHHHHHHHHH
Confidence 4567776666654
No 145
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.41 E-value=2.1e-12 Score=144.95 Aligned_cols=169 Identities=20% Similarity=0.332 Sum_probs=120.6
Q ss_pred hcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCC--ceEEEeccccccccccc
Q 002012 662 HKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTEN--ALVRIDMSEYMEKHSVS 739 (982)
Q Consensus 662 ~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~--~~v~i~~s~~~~~~~~~ 739 (982)
...++||+++++.|...+... ...+++|+||||||||++|+++++.+++... .+..+|+++..
T Consensus 24 ~~~~~g~~~~~~~L~~~i~~g---------~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~------ 88 (340)
T 1sxj_C 24 LDEVYGQNEVITTVRKFVDEG---------KLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDR------ 88 (340)
T ss_dssp GGGCCSCHHHHHHHHHHHHTT---------CCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCC------
T ss_pred HHHhcCcHHHHHHHHHHHhcC---------CCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccc------
Confidence 367899999999998888631 2225999999999999999999999865321 24444443311
Q ss_pred cccCCCCCccccccCCchhHHHh------hCCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEEec
Q 002012 740 RLVGAPPGYVGYEEGGQLTEVVR------RRPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTS 813 (982)
Q Consensus 740 ~l~g~~~g~vg~~~~~~l~~~l~------~~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~ts 813 (982)
|....+.....+. ...+.|++|||+|.++...++.|++++|+.. .+++||+++
T Consensus 89 ----------~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~-----------~~~~~il~~ 147 (340)
T 1sxj_C 89 ----------GIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYT-----------KNTRFCVLA 147 (340)
T ss_dssp ----------SHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTT-----------TTEEEEEEE
T ss_pred ----------cHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCC-----------CCeEEEEEe
Confidence 1000011111111 1236799999999999999999999999732 357888888
Q ss_pred CCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHHHHHHHHHhCCCC
Q 002012 814 NIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKID 893 (982)
Q Consensus 814 n~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~~~~~~~~~~~ 893 (982)
|.... +.|++.+||. .+.|.|++.+++.+++...++. .+
T Consensus 148 n~~~~-------------------------------i~~~i~sR~~-~~~~~~l~~~~~~~~l~~~~~~-------~~-- 186 (340)
T 1sxj_C 148 NYAHK-------------------------------LTPALLSQCT-RFRFQPLPQEAIERRIANVLVH-------EK-- 186 (340)
T ss_dssp SCGGG-------------------------------SCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHT-------TT--
T ss_pred cCccc-------------------------------cchhHHhhce-eEeccCCCHHHHHHHHHHHHHH-------cC--
Confidence 85432 6789999994 8999999999998888776643 33
Q ss_pred ccCCHHHHHHHHhc
Q 002012 894 LHYTKEAVTLLGIL 907 (982)
Q Consensus 894 l~i~~~a~~~L~~~ 907 (982)
+.+++++.+.++..
T Consensus 187 ~~i~~~~~~~i~~~ 200 (340)
T 1sxj_C 187 LKLSPNAEKALIEL 200 (340)
T ss_dssp CCBCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 56788888888765
No 146
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.41 E-value=4.4e-12 Score=144.68 Aligned_cols=220 Identities=14% Similarity=0.187 Sum_probs=147.6
Q ss_pred cccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCC-CCceEEEecccccccccc---
Q 002012 663 KRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNT-ENALVRIDMSEYMEKHSV--- 738 (982)
Q Consensus 663 ~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~-~~~~v~i~~s~~~~~~~~--- 738 (982)
..++|++..++.+...+.....+.. ..+ .+++|+||||||||++++.+++.+... +..++.++|+........
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~--~~~-~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 93 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPG--HHY-PRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGE 93 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTT--SSC-CEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCC--CCC-CeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHH
Confidence 6799999999999999887654411 111 259999999999999999999998655 467899998775432211
Q ss_pred -ccccCCCCCccccccC---CchhHHHhh-CCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEEec
Q 002012 739 -SRLVGAPPGYVGYEEG---GQLTEVVRR-RPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTS 813 (982)
Q Consensus 739 -~~l~g~~~g~vg~~~~---~~l~~~l~~-~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~ts 813 (982)
...+|......+.... ..+...+.. ....||||||++.+++..++.|+.++++..-. ...++.||+++
T Consensus 94 l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~-------~~~~~~iI~~~ 166 (389)
T 1fnn_A 94 IARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKL-------GAFRIALVIVG 166 (389)
T ss_dssp HHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHH-------SSCCEEEEEEE
T ss_pred HHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCC-------CcCCEEEEEEE
Confidence 1123332211121111 122233333 33679999999999999999999999752100 00267888888
Q ss_pred CCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhcccc-ccccCCCChhHHHHHHHHHHHHHHHHHHhCCC
Q 002012 814 NIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDE-YIVFQPLDSKEISKIVEIQMNRVKDRLKQKKI 892 (982)
Q Consensus 814 n~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~-ii~F~pl~~~~l~~il~~~l~~~~~~~~~~~~ 892 (982)
|... +. ..+.+.+.+|+.. .+.|+|++.+++.+++...+... ..
T Consensus 167 ~~~~--~~--------------------------~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~-------~~ 211 (389)
T 1fnn_A 167 HNDA--VL--------------------------NNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAG-------LA 211 (389)
T ss_dssp SSTH--HH--------------------------HTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHH-------BC
T ss_pred CCch--HH--------------------------HHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhh-------cC
Confidence 8642 11 2267788888865 79999999999999998877531 11
Q ss_pred CccCCHHHHHHHHhcCCCC------CCCchHHHHHHHHHHH
Q 002012 893 DLHYTKEAVTLLGILGFDP------NFGARPVKRVIQQLVE 927 (982)
Q Consensus 893 ~l~i~~~a~~~L~~~~~~~------~~gaR~L~~~i~~~l~ 927 (982)
...+++++++.+....|.. ....|.+.++++..+.
T Consensus 212 ~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~ 252 (389)
T 1fnn_A 212 EGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAY 252 (389)
T ss_dssp TTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHH
Confidence 2478999999999876522 2235777777766443
No 147
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.39 E-value=5.1e-12 Score=141.41 Aligned_cols=182 Identities=16% Similarity=0.196 Sum_probs=128.5
Q ss_pred chHHHHHHHHHhccCCCCC-cEEeCCCCCcHHHHHHHHHHHhhcCCCCCC--------------CCCCeEEEEecccccc
Q 002012 274 RDDEIRRCIQILSRRTKNN-PVIIGEPGVGKTAIAEGLAQRIVRGDVPET--------------LQNRKLISLDMASLVA 338 (982)
Q Consensus 274 ~~~~i~~l~~~L~~~~~~~-iLL~GppGvGKT~la~~la~~l~~~~~p~~--------------l~~~~v~~l~~~~l~~ 338 (982)
+++.++.+...+..+...| +||+||||+|||++|+.+|+.+.+...... .....++.++...
T Consensus 7 ~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~--- 83 (334)
T 1a5t_A 7 LRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEK--- 83 (334)
T ss_dssp GHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCT---
T ss_pred hHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccc---
Confidence 4566777888777766666 889999999999999999999865432110 0112345554321
Q ss_pred cccccccHHHHHHHHHHHHHhc---CCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcC--CCeEEEEecCchhHhhh
Q 002012 339 GTCYRGDFEKRLKAVLKEVTKS---NGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGR--GELRCIGATTLNEYRNY 413 (982)
Q Consensus 339 ~~~~~g~~e~~l~~l~~~~~~~---~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~--g~i~vI~at~~~~~~~~ 413 (982)
+... ...+.++.+++.+... +++.|++|||+|.+. .+++|.|+..++. ..+.+|++|+...
T Consensus 84 ~~~~--~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~--------~~a~naLLk~lEep~~~~~~Il~t~~~~---- 149 (334)
T 1a5t_A 84 GKNT--LGVDAVREVTEKLNEHARLGGAKVVWVTDAALLT--------DAAANALLKTLEEPPAETWFFLATREPE---- 149 (334)
T ss_dssp TCSS--BCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBC--------HHHHHHHHHHHTSCCTTEEEEEEESCGG----
T ss_pred cCCC--CCHHHHHHHHHHHhhccccCCcEEEEECchhhcC--------HHHHHHHHHHhcCCCCCeEEEEEeCChH----
Confidence 0011 1123455666655422 346799999999986 4567888888885 4688888888776
Q ss_pred hhcChHHHhccceEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCCcchhhHHHHHH
Q 002012 414 IEKDPALERRFQQVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLPDKAIDLVDEA 488 (982)
Q Consensus 414 ~~~d~al~rRf~~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~p~~a~~lld~a 488 (982)
.+.|++++||+.+.+..|+.+++..+|.... .++++++..++.++++. |..+..+++..
T Consensus 150 -~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~---------~~~~~~~~~l~~~s~G~------~r~a~~~l~~~ 208 (334)
T 1a5t_A 150 -RLLATLRSRCRLHYLAPPPEQYAVTWLSREV---------TMSQDALLAALRLSAGS------PGAALALFQGD 208 (334)
T ss_dssp -GSCHHHHTTSEEEECCCCCHHHHHHHHHHHC---------CCCHHHHHHHHHHTTTC------HHHHHHTTSSH
T ss_pred -hCcHHHhhcceeeeCCCCCHHHHHHHHHHhc---------CCCHHHHHHHHHHcCCC------HHHHHHHhccc
Confidence 7899999999999999999999888876432 57889988888887643 46666666543
No 148
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.39 E-value=1.3e-12 Score=147.27 Aligned_cols=196 Identities=15% Similarity=0.225 Sum_probs=123.7
Q ss_pred cccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEecccccccc------
Q 002012 663 KRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKH------ 736 (982)
Q Consensus 663 ~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~------ 736 (982)
.+++||+.+++.+...+. . ..+. .+++|+||+|+|||++++++++.+++.....+.++...+....
T Consensus 14 ~~~vg~~~~~~~l~~~~~------~-~~~~-~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~ 85 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSD------Q-PRDL-PHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLEL 85 (354)
T ss_dssp GGCCSCHHHHHHHHTTTT------C-TTCC-CCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------
T ss_pred HHhcCCHHHHHHHHHHHh------h-CCCC-CeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccccccee
Confidence 678999999887766551 1 1222 2499999999999999999999775543332333221111000
Q ss_pred ------ccccccCCCCCcccccc---CCchhHHH-h-------------hCCCeEEEEccccccCHHHHHHHHHhhhcCc
Q 002012 737 ------SVSRLVGAPPGYVGYEE---GGQLTEVV-R-------------RRPYSVVLFDEIEKAHQDVFNILLQLLDDGR 793 (982)
Q Consensus 737 ------~~~~l~g~~~g~vg~~~---~~~l~~~l-~-------------~~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~ 793 (982)
.+-.+.+.. .+... ...+.+.+ . ...+.|++|||++.+++..++.|++.|++..
T Consensus 86 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~ 162 (354)
T 1sxj_E 86 NVVSSPYHLEITPSD---MGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYS 162 (354)
T ss_dssp CCEECSSEEEECCC-------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHHHHHHHHST
T ss_pred eeecccceEEecHhh---cCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHHHHHHHHHHHHhhc
Confidence 000000000 01000 01111111 1 1245699999999999999999999999621
Q ss_pred eecCCCcEEecccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHH
Q 002012 794 ITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEIS 873 (982)
Q Consensus 794 ~~d~~g~~~~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~ 873 (982)
.+++||++||.... +.+++.+|| ..+.|+|++.+++.
T Consensus 163 -----------~~~~~Il~t~~~~~-------------------------------l~~~l~sR~-~~~~~~~~~~~~~~ 199 (354)
T 1sxj_E 163 -----------KNIRLIMVCDSMSP-------------------------------IIAPIKSQC-LLIRCPAPSDSEIS 199 (354)
T ss_dssp -----------TTEEEEEEESCSCS-------------------------------SCHHHHTTS-EEEECCCCCHHHHH
T ss_pred -----------CCCEEEEEeCCHHH-------------------------------HHHHHHhhc-eEEecCCcCHHHHH
Confidence 35788888885432 677899999 78999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCccCC-HHHHHHHHhcCCCCCCCchHHHHHHHH
Q 002012 874 KIVEIQMNRVKDRLKQKKIDLHYT-KEAVTLLGILGFDPNFGARPVKRVIQQ 924 (982)
Q Consensus 874 ~il~~~l~~~~~~~~~~~~~l~i~-~~a~~~L~~~~~~~~~gaR~L~~~i~~ 924 (982)
+++...+.. .+ +.++ +++++.|+..+ .+ +.|.+.+.++.
T Consensus 200 ~~l~~~~~~-------~~--~~~~~~~~l~~i~~~~-~G--~~r~a~~~l~~ 239 (354)
T 1sxj_E 200 TILSDVVTN-------ER--IQLETKDILKRIAQAS-NG--NLRVSLLMLES 239 (354)
T ss_dssp HHHHHHHHH-------HT--CEECCSHHHHHHHHHH-TT--CHHHHHHHHTH
T ss_pred HHHHHHHHH-------cC--CCCCcHHHHHHHHHHc-CC--CHHHHHHHHHH
Confidence 998887764 34 5688 89999998763 22 34666666665
No 149
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.37 E-value=2.7e-12 Score=141.15 Aligned_cols=145 Identities=16% Similarity=0.252 Sum_probs=104.9
Q ss_pred cchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcC---CCCceEEEeccccccccccccccC
Q 002012 667 GQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFN---TENALVRIDMSEYMEKHSVSRLVG 743 (982)
Q Consensus 667 Gq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~---~~~~~v~i~~s~~~~~~~~~~l~g 743 (982)
||+++++.+..+++.. + ..++||+||||+|||++|+++++.+.. ....+..++.+.
T Consensus 1 g~~~~~~~L~~~i~~~--------~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~------------ 59 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS--------E-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG------------ 59 (305)
T ss_dssp ---CHHHHHHHHHHTC--------S-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS------------
T ss_pred ChHHHHHHHHHHHHCC--------C-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc------------
Confidence 7899999999988732 2 336999999999999999999986411 123444444321
Q ss_pred CCCCccccccCCchhHHHhhCC----CeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCChHH
Q 002012 744 APPGYVGYEEGGQLTEVVRRRP----YSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHY 819 (982)
Q Consensus 744 ~~~g~vg~~~~~~l~~~l~~~~----~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~ 819 (982)
...+.++.+.+.+.+...| +.|+||||+|.++...+|+|++.||+.. .+++||++|+....
T Consensus 60 ---~~~~id~ir~li~~~~~~p~~~~~kvviIdead~lt~~a~naLLk~LEep~-----------~~t~fIl~t~~~~k- 124 (305)
T 2gno_A 60 ---ENIGIDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQQAANAFLKALEEPP-----------EYAVIVLNTRRWHY- 124 (305)
T ss_dssp ---SCBCHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCHHHHHHTHHHHHSCC-----------TTEEEEEEESCGGG-
T ss_pred ---CCCCHHHHHHHHHHHhhccccCCceEEEeccHHHhCHHHHHHHHHHHhCCC-----------CCeEEEEEECChHh-
Confidence 1223222334555555444 5799999999999999999999999732 46899998875322
Q ss_pred HHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHH
Q 002012 820 ILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQM 880 (982)
Q Consensus 820 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l 880 (982)
+.|++.+| ++.|.|++.+++.+.+...+
T Consensus 125 ------------------------------l~~tI~SR---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 125 ------------------------------LLPTIKSR---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp ------------------------------SCHHHHTT---SEEEECCCCHHHHHHHHHHH
T ss_pred ------------------------------ChHHHHce---eEeCCCCCHHHHHHHHHHHh
Confidence 78899999 89999999999999988775
No 150
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.37 E-value=4.3e-12 Score=137.72 Aligned_cols=207 Identities=17% Similarity=0.213 Sum_probs=135.6
Q ss_pred hhcccccchHHHHHHHHHHHHH--------hcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEecccc
Q 002012 661 LHKRVIGQDIAVKSVADAIRRS--------RAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEY 732 (982)
Q Consensus 661 l~~~iiGq~~a~~~l~~~i~~~--------~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~ 732 (982)
-+.+|.|.+++++.|.+.+... ..++. -|.+ ++|+||||||||+++++||..+ +..++.+++.++
T Consensus 8 ~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~---~~~G-vlL~Gp~GtGKTtLakala~~~---~~~~i~i~g~~l 80 (274)
T 2x8a_A 8 TWADIGALEDIREELTMAILAPVRNPDQFKALGLV---TPAG-VLLAGPPGCGKTLLAKAVANES---GLNFISVKGPEL 80 (274)
T ss_dssp ----CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCC---CCSE-EEEESSTTSCHHHHHHHHHHHT---TCEEEEEETTTT
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCC---CCCe-EEEECCCCCcHHHHHHHHHHHc---CCCEEEEEcHHH
Confidence 3577888888888887765321 11222 2233 9999999999999999999987 557888888765
Q ss_pred ccccccccccCCCCCcccccc--CCchhHHHhhCCCeEEEEccccccCH-----------HHHHHHHHhhhcCceecCCC
Q 002012 733 MEKHSVSRLVGAPPGYVGYEE--GGQLTEVVRRRPYSVVLFDEIEKAHQ-----------DVFNILLQLLDDGRITDSQG 799 (982)
Q Consensus 733 ~~~~~~~~l~g~~~g~vg~~~--~~~l~~~l~~~~~~Vl~lDEidkl~~-----------~~~~~Ll~~le~g~~~d~~g 799 (982)
... |.|... .+.+++......++++|+||+|.+.. .+.+.++..|+.|.-
T Consensus 81 ~~~------------~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~----- 143 (274)
T 2x8a_A 81 LNM------------YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEA----- 143 (274)
T ss_dssp CSS------------TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCS-----
T ss_pred Hhh------------hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccc-----
Confidence 321 222111 12344555455678999999997632 356777777776531
Q ss_pred cEEecccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHh--ccccccccCCCChhHHHHHHH
Q 002012 800 RTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLN--RIDEYIVFQPLDSKEISKIVE 877 (982)
Q Consensus 800 ~~~~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~--Rid~ii~F~pl~~~~l~~il~ 877 (982)
...+++++++|.... ++|+++. |||..|.|++++.++..+|++
T Consensus 144 ----~~~~i~ia~tn~p~~-------------------------------LD~al~r~gRfd~~i~~~~P~~~~r~~il~ 188 (274)
T 2x8a_A 144 ----RQQVFIMAATNRPDI-------------------------------IDPAILRPGRLDKTLFVGLPPPADRLAILK 188 (274)
T ss_dssp ----TTCEEEEEEESCGGG-------------------------------SCHHHHSTTSSCEEEECCSCCHHHHHHHHH
T ss_pred ----cCCEEEEeecCChhh-------------------------------CCHhhcCcccCCeEEEeCCcCHHHHHHHHH
Confidence 134778888886532 6788886 999999999999999999998
Q ss_pred HHHHHHHHHHHhCCCCccCC-HHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHH
Q 002012 878 IQMNRVKDRLKQKKIDLHYT-KEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAI 934 (982)
Q Consensus 878 ~~l~~~~~~~~~~~~~l~i~-~~a~~~L~~~~~~~~~gaR~L~~~i~~~l~~~la~~~ 934 (982)
..++. +.....+ +-.++.|+.......|.+.+|..+++.....++-+.+
T Consensus 189 ~~~~~--------~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~ 238 (274)
T 2x8a_A 189 TITKN--------GTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEM 238 (274)
T ss_dssp HHTTT--------TBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHhc--------ccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 76542 1111122 1124556654222356678999999998777775544
No 151
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.37 E-value=9.7e-13 Score=128.61 Aligned_cols=136 Identities=16% Similarity=0.132 Sum_probs=95.6
Q ss_pred CcccchHHHHHHHHHhcc--CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccccccccccHH
Q 002012 270 PVIGRDDEIRRCIQILSR--RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGTCYRGDFE 347 (982)
Q Consensus 270 ~liG~~~~i~~l~~~L~~--~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~~~~g~~e 347 (982)
+++|++..++++.+.+.+ ....+++|+||||||||++|+++++..... +.+++ ++++.+....
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~-------~~~~v-~~~~~~~~~~------- 66 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNA-------QGEFV-YRELTPDNAP------- 66 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTT-------TSCCE-EEECCTTTSS-------
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCcc-------CCCEE-EECCCCCcch-------
Confidence 579999999998887654 566789999999999999999999865332 56778 8888776441
Q ss_pred HHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhc--CCCeEEEEecCchhHh--hhhhcChHHHhc
Q 002012 348 KRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLG--RGELRCIGATTLNEYR--NYIEKDPALERR 423 (982)
Q Consensus 348 ~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le--~g~i~vI~at~~~~~~--~~~~~d~al~rR 423 (982)
.....+..+ ++ .+|||||++.+. .+.+..|+.++. ..++++|++||.+... ..-.+++.|..|
T Consensus 67 -~~~~~~~~a---~~-g~l~ldei~~l~--------~~~q~~Ll~~l~~~~~~~~~I~~t~~~~~~~~~~~~~~~~L~~r 133 (145)
T 3n70_A 67 -QLNDFIALA---QG-GTLVLSHPEHLT--------REQQYHLVQLQSQEHRPFRLIGIGDTSLVELAASNHIIAELYYC 133 (145)
T ss_dssp -CHHHHHHHH---TT-SCEEEECGGGSC--------HHHHHHHHHHHHSSSCSSCEEEEESSCHHHHHHHSCCCHHHHHH
T ss_pred -hhhcHHHHc---CC-cEEEEcChHHCC--------HHHHHHHHHHHhhcCCCEEEEEECCcCHHHHHHcCCCCHHHHHH
Confidence 122334333 22 389999999985 456666777775 3468899999976422 122467888889
Q ss_pred cceEEecCCC
Q 002012 424 FQQVFCDQPS 433 (982)
Q Consensus 424 f~~i~i~~Ps 433 (982)
+..+.+..|+
T Consensus 134 l~~~~i~lPp 143 (145)
T 3n70_A 134 FAMTQIACLP 143 (145)
T ss_dssp HHHHEEECCC
T ss_pred hcCCEEeCCC
Confidence 8755555553
No 152
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.36 E-value=1.9e-12 Score=147.44 Aligned_cols=218 Identities=15% Similarity=0.194 Sum_probs=141.1
Q ss_pred cccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCC------CCceEEEecccccccc
Q 002012 663 KRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNT------ENALVRIDMSEYMEKH 736 (982)
Q Consensus 663 ~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~------~~~~v~i~~s~~~~~~ 736 (982)
..++|++..++.+...+.....+ .. ..+++|+||||||||++++.+++.+... +..++.++|.......
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~----~~-~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 93 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRG----EK-PSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPY 93 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSS----CC-CCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcC----CC-CCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHH
Confidence 67999999999998877644222 12 2359999999999999999999987332 5678899988754332
Q ss_pred c----cccccCCCCCccccccC---CchhHHHhhCC-CeEEEEccccccCHH--HHHHHHHhhhcCceecCCCcEEeccc
Q 002012 737 S----VSRLVGAPPGYVGYEEG---GQLTEVVRRRP-YSVVLFDEIEKAHQD--VFNILLQLLDDGRITDSQGRTVSFTN 806 (982)
Q Consensus 737 ~----~~~l~g~~~g~vg~~~~---~~l~~~l~~~~-~~Vl~lDEidkl~~~--~~~~Ll~~le~g~~~d~~g~~~~~~~ 806 (982)
. +...+|......|.... ..+...+.... ..||||||+|.+... .++.|..+++...... . ..+
T Consensus 94 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~-----~-~~~ 167 (387)
T 2v1u_A 94 RVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELG-----D-RVW 167 (387)
T ss_dssp HHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----------
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcC-----C-Cce
Confidence 1 11122332222222111 12333343333 569999999999876 6777777776321100 0 135
Q ss_pred EEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhcccc-ccccCCCChhHHHHHHHHHHHHHHH
Q 002012 807 CVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDE-YIVFQPLDSKEISKIVEIQMNRVKD 885 (982)
Q Consensus 807 ~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~-ii~F~pl~~~~l~~il~~~l~~~~~ 885 (982)
+++|++||.... ...+.+.+.+|+.. .+.|+|++.+++.+++...+...
T Consensus 168 ~~~I~~t~~~~~----------------------------~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~-- 217 (387)
T 2v1u_A 168 VSLVGITNSLGF----------------------------VENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEA-- 217 (387)
T ss_dssp CEEEEECSCSTT----------------------------SSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHH--
T ss_pred EEEEEEECCCch----------------------------HhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhh--
Confidence 788999886421 01267888899976 89999999999999998887531
Q ss_pred HHHhCCCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHHHH
Q 002012 886 RLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLV 926 (982)
Q Consensus 886 ~~~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~l 926 (982)
.....+++++++.+....+......|.+.++++..+
T Consensus 218 -----~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~ 253 (387)
T 2v1u_A 218 -----FNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAG 253 (387)
T ss_dssp -----BCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred -----ccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 113568888899888875422223567767766643
No 153
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.35 E-value=6.5e-12 Score=134.79 Aligned_cols=200 Identities=24% Similarity=0.342 Sum_probs=127.7
Q ss_pred hcccccchHHHHHHHHHHHHHhc-----CCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEecccccccc
Q 002012 662 HKRVIGQDIAVKSVADAIRRSRA-----GLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKH 736 (982)
Q Consensus 662 ~~~iiGq~~a~~~l~~~i~~~~~-----g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~ 736 (982)
+++++|+++++..+.+....... ... -.-+.+ ++|+||||||||+++++++..+ +.+++.+++.++....
T Consensus 15 ~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~-~~~~~g-~ll~G~~G~GKTtl~~~i~~~~---~~~~i~~~~~~~~~~~ 89 (254)
T 1ixz_A 15 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMG-ARIPKG-VLLVGPPGVGKTHLARAVAGEA---RVPFITASGSDFVEMF 89 (254)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCHHHHHHTT-CCCCSE-EEEECCTTSSHHHHHHHHHHHT---TCCEEEEEHHHHHHSC
T ss_pred HHHhCCcHHHHHHHHHHHHHHHCHHHHHHcC-CCCCCe-EEEECCCCCCHHHHHHHHHHHh---CCCEEEeeHHHHHHHH
Confidence 36788888888777766543311 000 112333 9999999999999999999987 5678888877653211
Q ss_pred ccccccCCCCCccccccCCchhHHHhhCCCeEEEEccccccC--------------HHHHHHHHHhhhcCceecCCCcEE
Q 002012 737 SVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEIEKAH--------------QDVFNILLQLLDDGRITDSQGRTV 802 (982)
Q Consensus 737 ~~~~l~g~~~g~vg~~~~~~l~~~l~~~~~~Vl~lDEidkl~--------------~~~~~~Ll~~le~g~~~d~~g~~~ 802 (982)
.|. +....+.+++......++++++||+|.+. ...++.++..|+.|.-
T Consensus 90 -----~~~-----~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~-------- 151 (254)
T 1ixz_A 90 -----VGV-----GAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK-------- 151 (254)
T ss_dssp -----TTH-----HHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCT--------
T ss_pred -----hhH-----HHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCC--------
Confidence 110 00011123444444456899999998763 1245677777765431
Q ss_pred ecccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHh--ccccccccCCCChhHHHHHHHHHH
Q 002012 803 SFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLN--RIDEYIVFQPLDSKEISKIVEIQM 880 (982)
Q Consensus 803 ~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~--Rid~ii~F~pl~~~~l~~il~~~l 880 (982)
-..+++++++|.... ++|++++ ||+..|.|++++.++..+|++..+
T Consensus 152 -~~~~i~~a~t~~p~~-------------------------------ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~ 199 (254)
T 1ixz_A 152 -DTAIVVMAATNRPDI-------------------------------LDPALLRPGRFDRQIAIDAPDVKGREQILRIHA 199 (254)
T ss_dssp -TCCEEEEEEESCGGG-------------------------------SCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHH
T ss_pred -CCCEEEEEccCCchh-------------------------------CCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHH
Confidence 124677778876432 6777776 899999999999999999986543
Q ss_pred HHHHHHHHhCCCCccCCHHH-HHHHHhcCCCCCCCchHHHHHHHHHHHHH
Q 002012 881 NRVKDRLKQKKIDLHYTKEA-VTLLGILGFDPNFGARPVKRVIQQLVENE 929 (982)
Q Consensus 881 ~~~~~~~~~~~~~l~i~~~a-~~~L~~~~~~~~~gaR~L~~~i~~~l~~~ 929 (982)
+ + +.+++++ +..|+.. |++ +.+|+|++++++....+
T Consensus 200 ~---------~--~~~~~~~~~~~la~~-~~G-~~~~dl~~~~~~a~~~a 236 (254)
T 1ixz_A 200 R---------G--KPLAEDVDLALLAKR-TPG-FVGADLENLLNEAALLA 236 (254)
T ss_dssp T---------T--SCBCTTCCHHHHHHT-CTT-CCHHHHHHHHHHHHHHH
T ss_pred c---------C--CCCCcccCHHHHHHH-cCC-CCHHHHHHHHHHHHHHH
Confidence 2 2 2333333 5666664 443 44589999998855443
No 154
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.34 E-value=6e-12 Score=145.96 Aligned_cols=176 Identities=15% Similarity=0.287 Sum_probs=120.9
Q ss_pred eEEeecCCCCchHHHHHHHHHHhcCC--CCceEEEeccccccccccccccCCCCCccccccCCchhHHHhhCCCeEEEEc
Q 002012 695 SFMFMGPTGVGKTELGKALADFLFNT--ENALVRIDMSEYMEKHSVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFD 772 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~~~--~~~~v~i~~s~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~~~~~Vl~lD 772 (982)
+++|+||||||||++|+++++.+... +.+++.+++..+.... ...+ .. .....+...+. ...+|||||
T Consensus 132 ~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~-~~~~-~~-------~~~~~~~~~~~-~~~~vL~ID 201 (440)
T 2z4s_A 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDL-VDSM-KE-------GKLNEFREKYR-KKVDILLID 201 (440)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHH-HHHH-HT-------TCHHHHHHHHT-TTCSEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHH-HHHH-Hc-------ccHHHHHHHhc-CCCCEEEEe
Confidence 59999999999999999999988433 5678888888763211 0000 00 00001112221 146799999
Q ss_pred cccccCH--HHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhc
Q 002012 773 EIEKAHQ--DVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTF 850 (982)
Q Consensus 773 Eidkl~~--~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 850 (982)
|++.+.. ..++.|+.+++.-. . .+..+|+||+.....+ ..+
T Consensus 202 Ei~~l~~~~~~q~~l~~~l~~l~--~--------~~~~iIitt~~~~~~l---------------------------~~l 244 (440)
T 2z4s_A 202 DVQFLIGKTGVQTELFHTFNELH--D--------SGKQIVICSDREPQKL---------------------------SEF 244 (440)
T ss_dssp CGGGGSSCHHHHHHHHHHHHHHH--T--------TTCEEEEEESSCGGGC---------------------------SSC
T ss_pred CcccccCChHHHHHHHHHHHHHH--H--------CCCeEEEEECCCHHHH---------------------------HHH
Confidence 9999986 78888888876411 0 1245666776554321 126
Q ss_pred ChHHHhccc--cccccCCCChhHHHHHHHHHHHHHHHHHHhCCCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHHHHHH
Q 002012 851 RPEFLNRID--EYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVEN 928 (982)
Q Consensus 851 ~p~ll~Rid--~ii~F~pl~~~~l~~il~~~l~~~~~~~~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~l~~ 928 (982)
.+.+++||. .++.|.|++.+++..|+...+.. .+ +.++++++++|+... . .++|.+.++++.++..
T Consensus 245 ~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~-------~~--~~i~~e~l~~la~~~-~--gn~R~l~~~L~~~~~~ 312 (440)
T 2z4s_A 245 QDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEI-------EH--GELPEEVLNFVAENV-D--DNLRRLRGAIIKLLVY 312 (440)
T ss_dssp CHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHH-------HT--CCCCTTHHHHHHHHC-C--SCHHHHHHHHHHHHHH
T ss_pred HHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHH-------cC--CCCCHHHHHHHHHhc-C--CCHHHHHHHHHHHHHH
Confidence 788999996 68999999999999999877753 23 678999999999863 3 3569999999886554
Q ss_pred H
Q 002012 929 E 929 (982)
Q Consensus 929 ~ 929 (982)
+
T Consensus 313 a 313 (440)
T 2z4s_A 313 K 313 (440)
T ss_dssp H
T ss_pred H
Confidence 3
No 155
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.33 E-value=5.1e-11 Score=133.23 Aligned_cols=194 Identities=15% Similarity=0.278 Sum_probs=129.2
Q ss_pred cccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEecccccccccccccc
Q 002012 663 KRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRLV 742 (982)
Q Consensus 663 ~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l~ 742 (982)
..++||+.+++.+...+...... ..+..+++|+||||+|||++|++++..+ +.++....+..+..
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~----~~~~~~~ll~Gp~G~GKTTLa~~ia~~l---~~~~~~~sg~~~~~-------- 89 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMR----GEVLDHVLLAGPPGLGKTTLAHIIASEL---QTNIHVTSGPVLVK-------- 89 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHH----TCCCCCEEEESSTTSSHHHHHHHHHHHH---TCCEEEEETTTCCS--------
T ss_pred HHccCcHHHHHHHHHHHHHHHhc----CCCCCeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEechHhcC--------
Confidence 56889999999988888654221 1233459999999999999999999998 33433332221110
Q ss_pred CCCCCccccccCCchhHHHhh-CCCeEEEEccccccCHHHHHHHHHhhhcCcee-----cCCCcE--EecccEEEEEecC
Q 002012 743 GAPPGYVGYEEGGQLTEVVRR-RPYSVVLFDEIEKAHQDVFNILLQLLDDGRIT-----DSQGRT--VSFTNCVVIMTSN 814 (982)
Q Consensus 743 g~~~g~vg~~~~~~l~~~l~~-~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~-----d~~g~~--~~~~~~iiI~tsn 814 (982)
++.+...+.. ...+|+|+||++.+.+.+++.|+..++.+... ....+. .....+.+|.+++
T Consensus 90 -----------~~~l~~~~~~~~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~ 158 (334)
T 1in4_A 90 -----------QGDMAAILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATT 158 (334)
T ss_dssp -----------HHHHHHHHHHCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEEES
T ss_pred -----------HHHHHHHHHHccCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecC
Confidence 1122222222 34579999999999999999999988865321 000111 1224456666665
Q ss_pred CChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHHHHHHHHHhCCCCc
Q 002012 815 IGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDL 894 (982)
Q Consensus 815 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~~~~~~~~~~~l 894 (982)
... .+++.+.+||...+.|.|++.+++.+++...... .+ +
T Consensus 159 ~~~-------------------------------~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~-------~~--~ 198 (334)
T 1in4_A 159 RSG-------------------------------LLSSPLRSRFGIILELDFYTVKELKEIIKRAASL-------MD--V 198 (334)
T ss_dssp CGG-------------------------------GSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHH-------TT--C
T ss_pred Ccc-------------------------------cCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHH-------cC--C
Confidence 432 2788999999778899999999999999876553 23 6
Q ss_pred cCCHHHHHHHHhcCCCCCCCchHHHHHHHHH
Q 002012 895 HYTKEAVTLLGILGFDPNFGARPVKRVIQQL 925 (982)
Q Consensus 895 ~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~ 925 (982)
.++++++++|+... . -..|.+.+.++..
T Consensus 199 ~~~~~~~~~ia~~~-~--G~~R~a~~ll~~~ 226 (334)
T 1in4_A 199 EIEDAAAEMIAKRS-R--GTPRIAIRLTKRV 226 (334)
T ss_dssp CBCHHHHHHHHHTS-T--TCHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHhc-C--CChHHHHHHHHHH
Confidence 78999999999863 2 2356666666653
No 156
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.32 E-value=1.1e-11 Score=134.93 Aligned_cols=199 Identities=24% Similarity=0.344 Sum_probs=127.3
Q ss_pred hcccccchHHHHHHHHHHHHHhc-----CCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEecccccccc
Q 002012 662 HKRVIGQDIAVKSVADAIRRSRA-----GLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKH 736 (982)
Q Consensus 662 ~~~iiGq~~a~~~l~~~i~~~~~-----g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~ 736 (982)
+++++|+++++..+.+....... ... -.-+.+ ++|+||||||||+++++|+..+ ..+++.+++.++....
T Consensus 39 ~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~-~~~~~g-vll~Gp~GtGKTtl~~~i~~~~---~~~~i~~~~~~~~~~~ 113 (278)
T 1iy2_A 39 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMG-ARIPKG-VLLVGPPGVGKTHLARAVAGEA---RVPFITASGSDFVEMF 113 (278)
T ss_dssp GGGSSSCHHHHHHHHHHHHHHHCHHHHHHTT-CCCCCE-EEEECCTTSSHHHHHHHHHHHT---TCCEEEEEHHHHHHST
T ss_pred HHHhCChHHHHHHHHHHHHHHHCHHHHHHcC-CCCCCe-EEEECCCcChHHHHHHHHHHHc---CCCEEEecHHHHHHHH
Confidence 46789999888888776654321 000 112233 9999999999999999999987 4678888887653211
Q ss_pred ccccccCCCCCccccccCCchhHHHhhCCCeEEEEccccccC--------------HHHHHHHHHhhhcCceecCCCcEE
Q 002012 737 SVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEIEKAH--------------QDVFNILLQLLDDGRITDSQGRTV 802 (982)
Q Consensus 737 ~~~~l~g~~~g~vg~~~~~~l~~~l~~~~~~Vl~lDEidkl~--------------~~~~~~Ll~~le~g~~~d~~g~~~ 802 (982)
.+. .....+.+++......++++|+||+|.+. ....+.++..|+.|.-
T Consensus 114 -----~~~-----~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~-------- 175 (278)
T 1iy2_A 114 -----VGV-----GAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK-------- 175 (278)
T ss_dssp -----TTH-----HHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCT--------
T ss_pred -----hhH-----HHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCC--------
Confidence 110 00011123444444556899999998762 1234555555554321
Q ss_pred ecccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHh--ccccccccCCCChhHHHHHHHHHH
Q 002012 803 SFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLN--RIDEYIVFQPLDSKEISKIVEIQM 880 (982)
Q Consensus 803 ~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~--Rid~ii~F~pl~~~~l~~il~~~l 880 (982)
-..+++++++|.... ++|++++ ||+..|.|++++.++..+|+...+
T Consensus 176 -~~~~i~~a~t~~p~~-------------------------------ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~ 223 (278)
T 1iy2_A 176 -DTAIVVMAATNRPDI-------------------------------LDPALLRPGRFDRQIAIDAPDVKGREQILRIHA 223 (278)
T ss_dssp -TCCEEEEEEESCTTS-------------------------------SCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHH
T ss_pred -CCCEEEEEecCCchh-------------------------------CCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHH
Confidence 124678888886532 6777775 899999999999999999987543
Q ss_pred HHHHHHHHhCCCCccCCHHH-HHHHHhcCCCCCCCchHHHHHHHHHHHH
Q 002012 881 NRVKDRLKQKKIDLHYTKEA-VTLLGILGFDPNFGARPVKRVIQQLVEN 928 (982)
Q Consensus 881 ~~~~~~~~~~~~~l~i~~~a-~~~L~~~~~~~~~gaR~L~~~i~~~l~~ 928 (982)
+ + +.+++++ +..|+.. |++ +..|+|+++++.....
T Consensus 224 ~---------~--~~~~~~~~~~~la~~-~~G-~~~~dl~~l~~~a~~~ 259 (278)
T 1iy2_A 224 R---------G--KPLAEDVDLALLAKR-TPG-FVGADLENLLNEAALL 259 (278)
T ss_dssp T---------T--SCBCTTCCHHHHHHT-CTT-CCHHHHHHHHHHHHHH
T ss_pred c---------c--CCCCcccCHHHHHHH-cCC-CCHHHHHHHHHHHHHH
Confidence 2 1 2344433 5566654 544 4448899988875543
No 157
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.32 E-value=1.3e-11 Score=146.16 Aligned_cols=201 Identities=16% Similarity=0.139 Sum_probs=129.1
Q ss_pred hcccccchHHHHHHHHHHHHHh----cCCCCCC----CCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccc
Q 002012 662 HKRVIGQDIAVKSVADAIRRSR----AGLSDPA----RPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYM 733 (982)
Q Consensus 662 ~~~iiGq~~a~~~l~~~i~~~~----~g~~~~~----~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~ 733 (982)
+.+++|++.+++.+...+..+. .+...+. .+..++||+||||||||++|+++|+.+ +.+++.+++++..
T Consensus 38 ~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l---~~~~i~in~s~~~ 114 (516)
T 1sxj_A 38 LQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL---GYDILEQNASDVR 114 (516)
T ss_dssp GGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT---TCEEEEECTTSCC
T ss_pred HHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc---CCCEEEEeCCCcc
Confidence 3679999999999999887543 1222111 133469999999999999999999998 7889999998865
Q ss_pred cccccccccCCCCCccccccCCchhHHH-----hhCCCeEEEEccccccCHH---HHHHHHHhhhcCceecCCCcEEecc
Q 002012 734 EKHSVSRLVGAPPGYVGYEEGGQLTEVV-----RRRPYSVVLFDEIEKAHQD---VFNILLQLLDDGRITDSQGRTVSFT 805 (982)
Q Consensus 734 ~~~~~~~l~g~~~g~vg~~~~~~l~~~l-----~~~~~~Vl~lDEidkl~~~---~~~~Ll~~le~g~~~d~~g~~~~~~ 805 (982)
........+...... .....++... ....+.||||||+|.+... ..+.|++++++..
T Consensus 115 ~~~~~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~~------------ 179 (516)
T 1sxj_A 115 SKTLLNAGVKNALDN---MSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTS------------ 179 (516)
T ss_dssp CHHHHHHTGGGGTTB---CCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHCS------------
T ss_pred hHHHHHHHHHHHhcc---ccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhcC------------
Confidence 432222111110000 0000011111 2345689999999999764 4488888888632
Q ss_pred cEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHHHHHHHHHHH
Q 002012 806 NCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKD 885 (982)
Q Consensus 806 ~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~~~ 885 (982)
+.||+++|.... ..+ +.|.+|+ ..+.|+|++.+++.+++...+..
T Consensus 180 -~~iIli~~~~~~-----------------------------~~l-~~l~~r~-~~i~f~~~~~~~~~~~L~~i~~~--- 224 (516)
T 1sxj_A 180 -TPLILICNERNL-----------------------------PKM-RPFDRVC-LDIQFRRPDANSIKSRLMTIAIR--- 224 (516)
T ss_dssp -SCEEEEESCTTS-----------------------------STT-GGGTTTS-EEEECCCCCHHHHHHHHHHHHHH---
T ss_pred -CCEEEEEcCCCC-----------------------------ccc-hhhHhce-EEEEeCCCCHHHHHHHHHHHHHH---
Confidence 234555543210 002 2455666 58999999999999988766553
Q ss_pred HHHhCCCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHH
Q 002012 886 RLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQ 924 (982)
Q Consensus 886 ~~~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~ 924 (982)
.+ +.+++++++.|+..+ .+ ..|.+.+.++.
T Consensus 225 ----~~--~~i~~~~l~~la~~s-~G--diR~~i~~L~~ 254 (516)
T 1sxj_A 225 ----EK--FKLDPNVIDRLIQTT-RG--DIRQVINLLST 254 (516)
T ss_dssp ----HT--CCCCTTHHHHHHHHT-TT--CHHHHHHHHTH
T ss_pred ----cC--CCCCHHHHHHHHHHc-CC--cHHHHHHHHHH
Confidence 23 568899999998863 22 24666666654
No 158
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.31 E-value=4.8e-13 Score=130.46 Aligned_cols=131 Identities=11% Similarity=0.188 Sum_probs=91.3
Q ss_pred CcccchHHHHHHHHHhcc--CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccccccccccHH
Q 002012 270 PVIGRDDEIRRCIQILSR--RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGTCYRGDFE 347 (982)
Q Consensus 270 ~liG~~~~i~~l~~~L~~--~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~~~~g~~e 347 (982)
+++|+++.++++.+.+.+ ....+++|+||||||||++|+++++.. . +++.++++.+....
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~----------~-~~~~~~~~~~~~~~------- 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG----------T-PWVSPARVEYLIDM------- 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT----------S-CEECCSSTTHHHHC-------
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC----------C-CeEEechhhCChHh-------
Confidence 579999999888887654 566789999999999999999998765 3 78888877654321
Q ss_pred HHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcC---CCeEEEEecCchhHh-hhhhcChHHHhc
Q 002012 348 KRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGR---GELRCIGATTLNEYR-NYIEKDPALERR 423 (982)
Q Consensus 348 ~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~---g~i~vI~at~~~~~~-~~~~~d~al~rR 423 (982)
...++..+ + +.+|||||++.+. .+.+..|..+++. .++++|++||.+... ..- +++.|..|
T Consensus 67 --~~~~~~~a---~-~~~l~lDei~~l~--------~~~q~~Ll~~l~~~~~~~~~iI~~tn~~~~~~~~~-~~~~L~~r 131 (143)
T 3co5_A 67 --PMELLQKA---E-GGVLYVGDIAQYS--------RNIQTGITFIIGKAERCRVRVIASCSYAAGSDGIS-CEEKLAGL 131 (143)
T ss_dssp --HHHHHHHT---T-TSEEEEEECTTCC--------HHHHHHHHHHHHHHTTTTCEEEEEEEECTTTC--C-HHHHHHHH
T ss_pred --hhhHHHhC---C-CCeEEEeChHHCC--------HHHHHHHHHHHHhCCCCCEEEEEecCCCHHHHHhC-ccHHHHHH
Confidence 23344332 2 3489999999985 4566777787774 469999999976421 111 45777888
Q ss_pred cceEEecCCC
Q 002012 424 FQQVFCDQPS 433 (982)
Q Consensus 424 f~~i~i~~Ps 433 (982)
|..+.+..|+
T Consensus 132 l~~~~i~lPp 141 (143)
T 3co5_A 132 FSESVVRIPP 141 (143)
T ss_dssp SSSEEEEECC
T ss_pred hcCcEEeCCC
Confidence 8765555554
No 159
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.31 E-value=4.1e-11 Score=139.95 Aligned_cols=205 Identities=16% Similarity=0.127 Sum_probs=127.5
Q ss_pred CcccchHHHHHHHHHhccCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecc-----cccccccccc
Q 002012 270 PVIGRDDEIRRCIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMA-----SLVAGTCYRG 344 (982)
Q Consensus 270 ~liG~~~~i~~l~~~L~~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~-----~l~~~~~~~g 344 (982)
.++|+++.++.+...+..+ .|+||+||||||||++|+++|..+.. +..+..+++. ++.+. +.+
T Consensus 23 ~ivGq~~~i~~l~~al~~~--~~VLL~GpPGtGKT~LAraLa~~l~~--------~~~f~~~~~~~~t~~dL~G~--~~~ 90 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAFQN--------ARAFEYLMTRFSTPEEVFGP--LSI 90 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHT--CEEEEECCSSSSHHHHHHHGGGGBSS--------CCEEEEECCTTCCHHHHHCC--BC-
T ss_pred hhHHHHHHHHHHHHHHhcC--CeeEeecCchHHHHHHHHHHHHHHhh--------hhHHHHHHHhcCCHHHhcCc--ccH
Confidence 4899999999988887764 49999999999999999999987722 2233333332 12111 111
Q ss_pred cHHHHHHHHHHHHHhcC--CCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCCCe------------EEEEecCchhH
Q 002012 345 DFEKRLKAVLKEVTKSN--GQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRGEL------------RCIGATTLNEY 410 (982)
Q Consensus 345 ~~e~~l~~l~~~~~~~~--~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g~i------------~vI~at~~~~~ 410 (982)
..... ...+..+.... .+.|||||||+.+. ..+++.|+.+++.+.+ .+|+|||+.+-
T Consensus 91 ~~~~~-~g~~~~~~~g~l~~~~IL~IDEI~r~~--------~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN~lpe 161 (500)
T 3nbx_X 91 QALKD-EGRYERLTSGYLPEAEIVFLDEIWKAG--------PAILNTLLTAINERQFRNGAHVEKIPMRLLVAASNELPE 161 (500)
T ss_dssp ----------CBCCTTSGGGCSEEEEESGGGCC--------HHHHHHHHHHHHSSEEECSSSEEECCCCEEEEEESSCCC
T ss_pred HHHhh-chhHHhhhccCCCcceeeeHHhHhhhc--------HHHHHHHHHHHHHHhccCCCCcCCcchhhhhhccccCCC
Confidence 10000 11111111100 23489999999764 6677889998875432 34778875321
Q ss_pred hhhhhcChHHHhccc-eEEecCCCH-HHHHHHHHHHHH-------------------HHhhhcCCccChHHHHHHHHHhh
Q 002012 411 RNYIEKDPALERRFQ-QVFCDQPSV-ENTISILRGLRE-------------------RYELHHGVKISDSALVSAAVLAD 469 (982)
Q Consensus 411 ~~~~~~d~al~rRf~-~i~i~~Ps~-~e~~~IL~~~~~-------------------~~~~~~~v~i~~~~l~~~~~~s~ 469 (982)
.....+++.+||. .+.++.|+. +++..|++.... -...-.++.++++++++++.+..
T Consensus 162 --~~~~~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v~e~i~~l~~ 239 (500)
T 3nbx_X 162 --ADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHVFELIFMLRQ 239 (500)
T ss_dssp --TTCTTHHHHTTCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHHHHHHHHHHH
T ss_pred --ccccHHHHHHHHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHHHHHHHHHHH
Confidence 1124579999996 688889976 677788853221 00112468899999999988863
Q ss_pred hhh----ccCCCcchhhHHHHHHHHHhhhhcc
Q 002012 470 RYI----TERFLPDKAIDLVDEAAAKLKMEIT 497 (982)
Q Consensus 470 r~i----~~~~~p~~a~~lld~a~~~~~~~~~ 497 (982)
..- .....|+..+.++..|.+.+.+...
T Consensus 240 ~lr~~r~~~~iS~R~~~~llr~A~A~A~l~gr 271 (500)
T 3nbx_X 240 QLDKLPDAPYVSDRRWKKAIRLLQASAFFSGR 271 (500)
T ss_dssp HHHHCSSSCCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HhhcCCCCCccchhHHHHHHHHHHHHHhhcCC
Confidence 210 1123567777888888877776654
No 160
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.30 E-value=2e-11 Score=147.36 Aligned_cols=215 Identities=16% Similarity=0.220 Sum_probs=139.3
Q ss_pred HHhhcCCCCCcccchHHHHHHHHHhccCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEeccccc---
Q 002012 261 ELARSGKLDPVIGRDDEIRRCIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLV--- 337 (982)
Q Consensus 261 ~~~~~~~l~~liG~~~~i~~l~~~L~~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~--- 337 (982)
.+++|..+++++|++..++.+...+... .+++|+|||||||||+|++++..+..... ..+.+......
T Consensus 33 ~~~rp~~l~~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l~~~~~-------~~~~~~~~~~~~~~ 103 (604)
T 3k1j_A 33 IEVPEKLIDQVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELLPTETL-------EDILVFPNPEDENM 103 (604)
T ss_dssp SCCCSSHHHHCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTSCCSSC-------EEEEEECCTTCTTS
T ss_pred ccccccccceEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccCCcccC-------CeEEEeCCcccccC
Confidence 4567888889999999998888877654 59999999999999999999997743210 11111100000
Q ss_pred ---------------------------------------------------ccccccccHHHHHHHHHH-----------
Q 002012 338 ---------------------------------------------------AGTCYRGDFEKRLKAVLK----------- 355 (982)
Q Consensus 338 ---------------------------------------------------~~~~~~g~~e~~l~~l~~----------- 355 (982)
.+.............+|.
T Consensus 104 p~i~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~~g~ 183 (604)
T 3k1j_A 104 PRIKTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQSGG 183 (604)
T ss_dssp CEEEEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC----
T ss_pred CcEEEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhhcCC
Confidence 000000000000111111
Q ss_pred ------------HHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCC-----------------------CeE
Q 002012 356 ------------EVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRG-----------------------ELR 400 (982)
Q Consensus 356 ------------~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g-----------------------~i~ 400 (982)
.+...+ +.+|||||++.+. ..+++.|+.+|+.+ +++
T Consensus 184 ~~~g~~~~i~~g~~~~a~-~gvL~LDEi~~l~--------~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~ 254 (604)
T 3k1j_A 184 LGTPAHERVEPGMIHRAH-KGVLFIDEIATLS--------LKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFV 254 (604)
T ss_dssp CCCCGGGGEECCHHHHTT-TSEEEETTGGGSC--------HHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCE
T ss_pred ccccccccccCceeeecC-CCEEEEechhhCC--------HHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEE
Confidence 011122 3499999999984 56778888888733 457
Q ss_pred EEEecCchhHhhhhhcChHHHhccc----eEEecCC---CHHHHHHHHHHHHHHHhhh-cCCccChHHHHHHHHHhhhhh
Q 002012 401 CIGATTLNEYRNYIEKDPALERRFQ----QVFCDQP---SVENTISILRGLRERYELH-HGVKISDSALVSAAVLADRYI 472 (982)
Q Consensus 401 vI~at~~~~~~~~~~~d~al~rRf~----~i~i~~P---s~~e~~~IL~~~~~~~~~~-~~v~i~~~~l~~~~~~s~r~i 472 (982)
+|++||+..+. .++++|.+||. .+.+... ..+....+++.+...+... ....++++++..++.++.|+.
T Consensus 255 vI~atn~~~~~---~l~~~l~~R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~ 331 (604)
T 3k1j_A 255 LVAAGNLDTVD---KMHPALRSRIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRA 331 (604)
T ss_dssp EEEEECHHHHH---HSCHHHHHHHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTT
T ss_pred EEEecCHHHHh---hcCHHHHHHhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhh
Confidence 99999997532 58999999995 3443322 3555666666666655432 235799999999999988776
Q ss_pred ccCC----CcchhhHHHHHHHHHhhhhc
Q 002012 473 TERF----LPDKAIDLVDEAAAKLKMEI 496 (982)
Q Consensus 473 ~~~~----~p~~a~~lld~a~~~~~~~~ 496 (982)
..+. .++.+.+++..|...+....
T Consensus 332 g~r~~l~~~~R~l~~llr~A~~~A~~~~ 359 (604)
T 3k1j_A 332 GRKGHLTLRLRDLGGIVRAAGDIAVKKG 359 (604)
T ss_dssp CSTTEEECCHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccccCHHHHHHHHHHHHHHHHhcC
Confidence 6654 57888889988877665443
No 161
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.28 E-value=1.8e-12 Score=131.82 Aligned_cols=158 Identities=18% Similarity=0.264 Sum_probs=106.0
Q ss_pred hhhcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcC-------CCCceEEEecccc
Q 002012 660 VLHKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFN-------TENALVRIDMSEY 732 (982)
Q Consensus 660 ~l~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~-------~~~~~v~i~~s~~ 732 (982)
..+..++|+++.++.+...+.. ....+++|+||||||||++|+.+++.+.. .+.+++.++++.+
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~~---------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (195)
T 1jbk_A 19 GKLDPVIGRDEEIRRTIQVLQR---------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGAL 89 (195)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTS---------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHH
T ss_pred ccccccccchHHHHHHHHHHhc---------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHH
Confidence 3457899999998888777642 12235999999999999999999998743 2466777777655
Q ss_pred ccccccccccCCCCCcccccc--CCchhHHH-hhCCCeEEEEccccccC--------HHHHHHHHHhhhcCceecCCCcE
Q 002012 733 MEKHSVSRLVGAPPGYVGYEE--GGQLTEVV-RRRPYSVVLFDEIEKAH--------QDVFNILLQLLDDGRITDSQGRT 801 (982)
Q Consensus 733 ~~~~~~~~l~g~~~g~vg~~~--~~~l~~~l-~~~~~~Vl~lDEidkl~--------~~~~~~Ll~~le~g~~~d~~g~~ 801 (982)
.... .+.+... ...+...+ +...+.||+|||+|.+. ..+++.|..+++.+
T Consensus 90 ~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~~--------- 150 (195)
T 1jbk_A 90 VAGA----------KYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARG--------- 150 (195)
T ss_dssp HTTT----------CSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHTT---------
T ss_pred hccC----------CccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhccC---------
Confidence 3210 1111110 01122223 23446799999999995 34578888888753
Q ss_pred EecccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCChhHHHHHH
Q 002012 802 VSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIV 876 (982)
Q Consensus 802 ~~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~il 876 (982)
++.+|+++|..... . ...+++.+.+||+ .|.|++++.+++.+|+
T Consensus 151 ----~~~~i~~~~~~~~~--~------------------------~~~~~~~l~~r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 151 ----ELHCVGATTLDEYR--Q------------------------YIEKDAALERRFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp ----SCCEEEEECHHHHH--H------------------------HTTTCHHHHTTEE-EEECCCCCHHHHHTTC
T ss_pred ----CeEEEEeCCHHHHH--H------------------------HHhcCHHHHHHhc-eeecCCCCHHHHHHHh
Confidence 46788888753210 0 0125789999997 6899999999887764
No 162
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.21 E-value=6.8e-11 Score=129.99 Aligned_cols=147 Identities=11% Similarity=0.082 Sum_probs=107.7
Q ss_pred cchHHHHHHHHHhccCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccccccccccHHHHHHH
Q 002012 273 GRDDEIRRCIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGTCYRGDFEKRLKA 352 (982)
Q Consensus 273 G~~~~i~~l~~~L~~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~~~~g~~e~~l~~ 352 (982)
|+++.++.+...+..+..++.||+||||+|||++|+++++.+.. ... ....++.++.+.- . ...+.++.
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~--~~~--~~~d~~~l~~~~~-----~--~~id~ir~ 69 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEK--FPP--KASDVLEIDPEGE-----N--IGIDDIRT 69 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHT--SCC--CTTTEEEECCSSS-----C--BCHHHHHH
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCch--hhc--cCCCEEEEcCCcC-----C--CCHHHHHH
Confidence 67788888888887766668899999999999999999986421 111 2446677764321 1 11234566
Q ss_pred HHHHHHhc---CCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcC--CCeEEEEecCchhHhhhhhcChHHHhccceE
Q 002012 353 VLKEVTKS---NGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGR--GELRCIGATTLNEYRNYIEKDPALERRFQQV 427 (982)
Q Consensus 353 l~~~~~~~---~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~--g~i~vI~at~~~~~~~~~~~d~al~rRf~~i 427 (982)
+++.+... ++..|+||||+|.|. .+++|.|+..+|. ..+.+|++|+... .+.|++++| .+
T Consensus 70 li~~~~~~p~~~~~kvviIdead~lt--------~~a~naLLk~LEep~~~t~fIl~t~~~~-----kl~~tI~SR--~~ 134 (305)
T 2gno_A 70 IKDFLNYSPELYTRKYVIVHDCERMT--------QQAANAFLKALEEPPEYAVIVLNTRRWH-----YLLPTIKSR--VF 134 (305)
T ss_dssp HHHHHTSCCSSSSSEEEEETTGGGBC--------HHHHHHTHHHHHSCCTTEEEEEEESCGG-----GSCHHHHTT--SE
T ss_pred HHHHHhhccccCCceEEEeccHHHhC--------HHHHHHHHHHHhCCCCCeEEEEEECChH-----hChHHHHce--eE
Confidence 77666532 335699999999996 5677889999985 4788888888765 789999999 89
Q ss_pred EecCCCHHHHHHHHHHHH
Q 002012 428 FCDQPSVENTISILRGLR 445 (982)
Q Consensus 428 ~i~~Ps~~e~~~IL~~~~ 445 (982)
.+.+|+.+++...|....
T Consensus 135 ~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 135 RVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp EEECCCCHHHHHHHHHHH
T ss_pred eCCCCCHHHHHHHHHHHh
Confidence 999999999988887554
No 163
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.20 E-value=3.8e-10 Score=129.63 Aligned_cols=217 Identities=16% Similarity=0.128 Sum_probs=137.6
Q ss_pred CCcccchHHHHHHHHHh-cc------CCCCCcEE--eCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccc-
Q 002012 269 DPVIGRDDEIRRCIQIL-SR------RTKNNPVI--IGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVA- 338 (982)
Q Consensus 269 ~~liG~~~~i~~l~~~L-~~------~~~~~iLL--~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~- 338 (982)
+.++||+++++.+...+ .. ....+++| +||||+|||++++.+++.+.... +..-.+..++++++.....
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 100 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAA-AKEGLTVKQAYVNAFNAPNL 100 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHH-HHTTCCEEEEEEEGGGCCSH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHH-hccCCceeEEEEECCCCCCH
Confidence 66899999999998887 42 24557888 99999999999999998874310 0000145677777533211
Q ss_pred -----------cc--cccc-cHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhc-----C--C
Q 002012 339 -----------GT--CYRG-DFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLG-----R--G 397 (982)
Q Consensus 339 -----------~~--~~~g-~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le-----~--g 397 (982)
+. ...| .....+..+...+...++++||+|||+|.+..... ...+....|...+. . .
T Consensus 101 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~--~~~~~l~~l~~~~~~~~~~~~~~ 178 (412)
T 1w5s_A 101 YTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPR--IAAEDLYTLLRVHEEIPSRDGVN 178 (412)
T ss_dssp HHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTT--SCHHHHHHHHTHHHHSCCTTSCC
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccC--cchHHHHHHHHHHHhcccCCCCc
Confidence 00 0011 12222333333343345688999999999964311 12344444444443 3 6
Q ss_pred CeEEEEecCchhHhhhhhcC---hHHHhccc-eEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhhhhc
Q 002012 398 ELRCIGATTLNEYRNYIEKD---PALERRFQ-QVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADRYIT 473 (982)
Q Consensus 398 ~i~vI~at~~~~~~~~~~~d---~al~rRf~-~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~ 473 (982)
++.+|++|+..++... ++ +.+.++|. .+.+++++.++..++++....... ....++++++..++..+.+...
T Consensus 179 ~v~lI~~~~~~~~~~~--l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~ 254 (412)
T 1w5s_A 179 RIGFLLVASDVRALSY--MREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGL--RDTVWEPRHLELISDVYGEDKG 254 (412)
T ss_dssp BEEEEEEEEETHHHHH--HHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHB--CTTSCCHHHHHHHHHHHCGGGT
T ss_pred eEEEEEEeccccHHHH--HhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcC--CCCCCChHHHHHHHHHHHHhcc
Confidence 7889988876654322 34 67778875 588888999999999976655321 2345788999999888773322
Q ss_pred cCCCcchhhHHHHHHHHHh
Q 002012 474 ERFLPDKAIDLVDEAAAKL 492 (982)
Q Consensus 474 ~~~~p~~a~~lld~a~~~~ 492 (982)
....|..+..+++.+...+
T Consensus 255 ~~G~p~~~~~l~~~a~~~a 273 (412)
T 1w5s_A 255 GDGSARRAIVALKMACEMA 273 (412)
T ss_dssp SCCCHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHH
Confidence 2256788888887776543
No 164
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.20 E-value=5.6e-11 Score=135.07 Aligned_cols=213 Identities=16% Similarity=0.212 Sum_probs=135.6
Q ss_pred cccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCC---CCceEEEeccccccccc--
Q 002012 663 KRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNT---ENALVRIDMSEYMEKHS-- 737 (982)
Q Consensus 663 ~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~---~~~~v~i~~s~~~~~~~-- 737 (982)
..++|++..++.+...+.....+ ..+ .+++|+||+|||||++++.+++.+... +..++.++|........
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~----~~~-~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 94 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYRE----EKP-NNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVL 94 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGT----CCC-CCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcC----CCC-CeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHH
Confidence 67899999999888877643222 112 249999999999999999999987433 56788899876432211
Q ss_pred --cccccCCCCCccccccC---CchhHHHhhCC-CeEEEEccccccC----HHHHHHHHHhhhcCceecCCCcEEecccE
Q 002012 738 --VSRLVGAPPGYVGYEEG---GQLTEVVRRRP-YSVVLFDEIEKAH----QDVFNILLQLLDDGRITDSQGRTVSFTNC 807 (982)
Q Consensus 738 --~~~l~g~~~g~vg~~~~---~~l~~~l~~~~-~~Vl~lDEidkl~----~~~~~~Ll~~le~g~~~d~~g~~~~~~~~ 807 (982)
+...+|.+....+.... ..+...+.... ..||+|||++.+. .+.+..|+..++.. .-.++
T Consensus 95 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~----------~~~~~ 164 (386)
T 2qby_A 95 ADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEV----------NKSKI 164 (386)
T ss_dssp HHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSC----------CC--E
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhc----------CCCeE
Confidence 11112322222221111 12334444443 6799999999985 56777777777642 01357
Q ss_pred EEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhcccc-ccccCCCChhHHHHHHHHHHHHHHHH
Q 002012 808 VVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDE-YIVFQPLDSKEISKIVEIQMNRVKDR 886 (982)
Q Consensus 808 iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~-ii~F~pl~~~~l~~il~~~l~~~~~~ 886 (982)
.+|+++|.... . ..+.+.+.+|+.. .+.|+|++.+++.+++...+..
T Consensus 165 ~~I~~~~~~~~--~--------------------------~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~---- 212 (386)
T 2qby_A 165 SFIGITNDVKF--V--------------------------DLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQM---- 212 (386)
T ss_dssp EEEEEESCGGG--G--------------------------GGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHH----
T ss_pred EEEEEECCCCh--H--------------------------hhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHh----
Confidence 88888885321 0 1155677788854 7999999999999999887653
Q ss_pred HHhCCCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHHH
Q 002012 887 LKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQL 925 (982)
Q Consensus 887 ~~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~ 925 (982)
......+++++.+++....+......|.+.++++..
T Consensus 213 ---~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a 248 (386)
T 2qby_A 213 ---AFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVS 248 (386)
T ss_dssp ---HBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred ---hccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 112356889999888876442112345555555543
No 165
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=99.19 E-value=7.1e-11 Score=133.66 Aligned_cols=211 Identities=17% Similarity=0.142 Sum_probs=127.7
Q ss_pred HHHHHHhhhcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHH-HHHhcCCCCceEEEecccc
Q 002012 654 LVMLEEVLHKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKAL-ADFLFNTENALVRIDMSEY 732 (982)
Q Consensus 654 l~~l~~~l~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~l-a~~l~~~~~~~v~i~~s~~ 732 (982)
+..+.+.+.. |+||+.++..|.-++. |.....+...|+|+.|+||| ||.+|+.+ ++.+.. ..++...++..
T Consensus 205 ~~~l~~sIap-I~G~e~vK~aLll~L~----GG~~k~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR--~~ft~g~~ss~ 276 (506)
T 3f8t_A 205 LTTFARAIAP-LPGAEEVGKMLALQLF----SCVGKNSERLHVLLAGYPVV-CSEILHHVLDHLAPR--GVYVDLRRTEL 276 (506)
T ss_dssp HHHHHHHHCC-STTCHHHHHHHHHHHT----TCCSSGGGCCCEEEESCHHH-HHHHHHHHHHHTCSS--EEEEEGGGCCH
T ss_pred HHHHHHHhcc-cCCCHHHHHHHHHHHc----CCccccCCceeEEEECCCCh-HHHHHHHHHHHhCCC--eEEecCCCCCc
Confidence 4567778888 9999998776655442 32211222337999999999 99999999 876521 11221111110
Q ss_pred ccccccccccCC---CCCccccccCCchhHHHhhCCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEE
Q 002012 733 MEKHSVSRLVGA---PPGYVGYEEGGQLTEVVRRRPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVV 809 (982)
Q Consensus 733 ~~~~~~~~l~g~---~~g~vg~~~~~~l~~~l~~~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~ii 809 (982)
..+.+. +.| .. .-.+.+..+.++|+|+|||+++++..|.+|++.||+++++.. |. .-..++.|
T Consensus 277 ------~gLt~s~r~~tG-~~-----~~~G~l~LAdgGvl~lDEIn~~~~~~qsaLlEaMEe~~VtI~-G~-~lparf~V 342 (506)
T 3f8t_A 277 ------TDLTAVLKEDRG-WA-----LRAGAAVLADGGILAVDHLEGAPEPHRWALMEAMDKGTVTVD-GI-ALNARCAV 342 (506)
T ss_dssp ------HHHSEEEEESSS-EE-----EEECHHHHTTTSEEEEECCTTCCHHHHHHHHHHHHHSEEEET-TE-EEECCCEE
T ss_pred ------cCceEEEEcCCC-cc-----cCCCeeEEcCCCeeehHhhhhCCHHHHHHHHHHHhCCcEEEC-CE-EcCCCeEE
Confidence 011111 111 10 013356667788999999999999999999999999999877 65 33488999
Q ss_pred EEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCC-ChhH-H---HHHH-HHHHHHH
Q 002012 810 IMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPL-DSKE-I---SKIV-EIQMNRV 883 (982)
Q Consensus 810 I~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl-~~~~-l---~~il-~~~l~~~ 883 (982)
|+|+|+.. .. + . ... . -...+++++++|||.++....+ +.+. . ...+ ...+.++
T Consensus 343 IAA~NP~~-~y-d---~-~~s--~------------~~~~Lp~alLDRFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~y 402 (506)
T 3f8t_A 343 LAAINPGE-QW-P---S-DPP--I------------ARIDLDQDFLSHFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRY 402 (506)
T ss_dssp EEEECCCC----C---C-SCG--G------------GGCCSCHHHHTTCSEEEETTC--------------CCHHHHHHH
T ss_pred EEEeCccc-cc-C---C-CCC--c------------cccCCChHHhhheeeEEEecCCCChhHhhcccCCCCCHHHHHHH
Confidence 99999754 11 0 0 000 0 0124899999999875544333 2221 1 1111 1224444
Q ss_pred HHHHHhCCCCccCCHHHHHHHHh
Q 002012 884 KDRLKQKKIDLHYTKEAVTLLGI 906 (982)
Q Consensus 884 ~~~~~~~~~~l~i~~~a~~~L~~ 906 (982)
....+...+...+++++.++|.+
T Consensus 403 i~~ar~~~~~p~ls~ea~~yI~~ 425 (506)
T 3f8t_A 403 LLYAIREHPAPELTEEARKRLEH 425 (506)
T ss_dssp HHHHHHHCSCCEECHHHHHHHHH
T ss_pred HHHHHhcCCCceeCHHHHHHHHH
Confidence 44444344568899999888875
No 166
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.17 E-value=2.4e-11 Score=123.00 Aligned_cols=151 Identities=23% Similarity=0.288 Sum_probs=99.8
Q ss_pred HhhhcccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcC-------CCCceEEEeccc
Q 002012 659 EVLHKRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFN-------TENALVRIDMSE 731 (982)
Q Consensus 659 ~~l~~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~-------~~~~~v~i~~s~ 731 (982)
...+..++|++..++.+...+.. ....+++|+||||||||++|+.+++.+.. .+.+++.+++..
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~~---------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (187)
T 2p65_A 18 AGKLDPVIGRDTEIRRAIQILSR---------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSS 88 (187)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTS---------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHH
T ss_pred ccccchhhcchHHHHHHHHHHhC---------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHH
Confidence 34457899999998888777642 12235999999999999999999998844 245667777665
Q ss_pred cccccccccccCCCCCcccccc--CCchhHHHhhC-CCeEEEEccccccC---------HHHHHHHHHhhhcCceecCCC
Q 002012 732 YMEKHSVSRLVGAPPGYVGYEE--GGQLTEVVRRR-PYSVVLFDEIEKAH---------QDVFNILLQLLDDGRITDSQG 799 (982)
Q Consensus 732 ~~~~~~~~~l~g~~~g~vg~~~--~~~l~~~l~~~-~~~Vl~lDEidkl~---------~~~~~~Ll~~le~g~~~d~~g 799 (982)
+.... .+.+... ...+...+... .+.||||||++.+. .++++.|..+++.+
T Consensus 89 ~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~~------- 151 (187)
T 2p65_A 89 LIAGA----------KYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLARG------- 151 (187)
T ss_dssp HHHHC----------CSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHHTT-------
T ss_pred hhcCC----------CchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccccchHHHHHHHHHHhcC-------
Confidence 43210 0111100 11223334444 45799999999997 56788888888753
Q ss_pred cEEecccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcChHHHhccccccccCCCC
Q 002012 800 RTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLD 868 (982)
Q Consensus 800 ~~~~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~ 868 (982)
++++|+++|....... ..+.+.|.+||+ .|.+++++
T Consensus 152 ------~~~ii~~~~~~~~~~~--------------------------~~~~~~l~~R~~-~i~i~~p~ 187 (187)
T 2p65_A 152 ------ELRCIGATTVSEYRQF--------------------------IEKDKALERRFQ-QILVEQPS 187 (187)
T ss_dssp ------CSCEEEEECHHHHHHH--------------------------TTTCHHHHHHEE-EEECCSCC
T ss_pred ------CeeEEEecCHHHHHHH--------------------------HhccHHHHHhcC-cccCCCCC
Confidence 4678888885321000 125789999997 57777764
No 167
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.16 E-value=9.1e-12 Score=149.41 Aligned_cols=159 Identities=18% Similarity=0.208 Sum_probs=94.6
Q ss_pred CCcccchHHHHHHHHHhccCC-----------CCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEeccccc
Q 002012 269 DPVIGRDDEIRRCIQILSRRT-----------KNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLV 337 (982)
Q Consensus 269 ~~liG~~~~i~~l~~~L~~~~-----------~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~ 337 (982)
..++|+++..+.++..|.... ..|+||+||||||||++|+++|+.+.....+.. . ..+++.+.
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~---~---~~~~~~l~ 368 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTG---K---GSTAAGLT 368 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCT---T---CSTTTTSE
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCC---C---cccccccc
Confidence 458999887776665555432 128999999999999999999987632211100 0 01111111
Q ss_pred ccc---cccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCCC---------------e
Q 002012 338 AGT---CYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRGE---------------L 399 (982)
Q Consensus 338 ~~~---~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g~---------------i 399 (982)
+.. ...|.+... ...+.. ++ +.|||||||+.+. .+.++.|+++|+.+. +
T Consensus 369 ~~~~~~~~~g~~~~~-~G~l~~---A~-~gil~IDEid~l~--------~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~ 435 (595)
T 3f9v_A 369 AAVVREKGTGEYYLE-AGALVL---AD-GGIAVIDEIDKMR--------DEDRVAIHEAMEQQTVSIAKAGIVAKLNARA 435 (595)
T ss_dssp EECSSGGGTSSCSEE-ECHHHH---HS-SSEECCTTTTCCC--------SHHHHHHHHHHHSSSEEEESSSSEEEECCCC
T ss_pred ceeeecccccccccc-CCeeEe---cC-CCcEEeehhhhCC--------HhHhhhhHHHHhCCEEEEecCCcEEEecCce
Confidence 110 011111000 011111 13 2499999999985 566788889887654 4
Q ss_pred EEEEecCchh--Hhh------hhhcChHHHhccc--eEEecCCCHHHHHHHHHHHHHH
Q 002012 400 RCIGATTLNE--YRN------YIEKDPALERRFQ--QVFCDQPSVENTISILRGLRER 447 (982)
Q Consensus 400 ~vI~at~~~~--~~~------~~~~d~al~rRf~--~i~i~~Ps~~e~~~IL~~~~~~ 447 (982)
.+|+|||+.. |.. .+.++++|.+||+ .+..+.|+.+ ...|++++...
T Consensus 436 ~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e-~~~i~~~il~~ 492 (595)
T 3f9v_A 436 AVIAAGNPKFGRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQ-DRELANYILDV 492 (595)
T ss_dssp EEEEEECCTTCCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHH-HHHHHHHHHTT
T ss_pred EEEEEcCCcCCccCcccCchhccCCCHHHHhhCeEEEEeCCCCCHH-HHHHHHHHHHH
Confidence 6899999863 111 1278999999996 4444556666 66666665543
No 168
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.07 E-value=7.3e-09 Score=117.94 Aligned_cols=181 Identities=18% Similarity=0.268 Sum_probs=126.1
Q ss_pred CCCcccchHHHHHHHHHhcc--CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccccc-----
Q 002012 268 LDPVIGRDDEIRRCIQILSR--RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGT----- 340 (982)
Q Consensus 268 l~~liG~~~~i~~l~~~L~~--~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~----- 340 (982)
+..++|.+..++.+.+.+.+ ....+++|+|++|||||++|+.++..... .+.+++.+||+++....
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r-------~~~~fv~v~~~~~~~~~~~~el 208 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDR-------SKEPFVALNVASIPRDIFEAEL 208 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHSTT-------TTSCEEEEETTTSCHHHHHHHH
T ss_pred chhhhhccHHhhHHHHHHHHhcCCCCCeEEecCCCcCHHHHHHHHHHhcCC-------CCCCeEEEecCCCCHHHHHHHh
Confidence 56789999888888776544 45667899999999999999999987532 25789999998764210
Q ss_pred ------cccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCC-------------CeEE
Q 002012 341 ------CYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRG-------------ELRC 401 (982)
Q Consensus 341 ------~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g-------------~i~v 401 (982)
.+.|.... ....|.. .++ .+||||||+.+. .+++..|+++++.+ ++++
T Consensus 209 fg~~~g~~tga~~~-~~g~~~~---a~~-gtlfldei~~l~--------~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~ri 275 (387)
T 1ny5_A 209 FGYEKGAFTGAVSS-KEGFFEL---ADG-GTLFLDEIGELS--------LEAQAKLLRVIESGKFYRLGGRKEIEVNVRI 275 (387)
T ss_dssp HCBCTTSSTTCCSC-BCCHHHH---TTT-SEEEEESGGGCC--------HHHHHHHHHHHHHSEECCBTCCSBEECCCEE
T ss_pred cCCCCCCCCCcccc-cCCceee---CCC-cEEEEcChhhCC--------HHHHHHHHHHHhcCcEEeCCCCceeeccEEE
Confidence 11111110 1122322 233 489999999996 67888898888754 5689
Q ss_pred EEecCchhHh--hhhhcChHHHhccceEEecCCC----HHHHHHHHHHHHHHHhhhcC---CccChHHHHHHHHHh
Q 002012 402 IGATTLNEYR--NYIEKDPALERRFQQVFCDQPS----VENTISILRGLRERYELHHG---VKISDSALVSAAVLA 468 (982)
Q Consensus 402 I~at~~~~~~--~~~~~d~al~rRf~~i~i~~Ps----~~e~~~IL~~~~~~~~~~~~---v~i~~~~l~~~~~~s 468 (982)
|+|||.+... ..-...+.|..|+..+.+..|+ .+|+..+++.+..++...++ ..++++++..+..+.
T Consensus 276 i~at~~~l~~~~~~g~fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~~~ 351 (387)
T 1ny5_A 276 LAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYP 351 (387)
T ss_dssp EEEESSCHHHHHHTTSSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHSC
T ss_pred EEeCCCCHHHHHHcCCccHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCC
Confidence 9999985421 1123567788898877777776 46777777888877765544 358999998887763
No 169
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.06 E-value=3.4e-09 Score=119.78 Aligned_cols=179 Identities=19% Similarity=0.250 Sum_probs=123.1
Q ss_pred CCcccchHHHHHHHHHhcc--CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccccc------
Q 002012 269 DPVIGRDDEIRRCIQILSR--RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGT------ 340 (982)
Q Consensus 269 ~~liG~~~~i~~l~~~L~~--~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~------ 340 (982)
..++|.+..+..+...+.+ ....+++++|++||||+.+|+.++....+ ...++.+||+.+....
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~~s~r--------~~~fv~vnc~~~~~~~~~~~lf 200 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRYSGR--------KGAFVDLNCASIPQELAESELF 200 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHHHHCC--------CSCEEEEESSSSCTTTHHHHHH
T ss_pred ccccccchHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHHhccc--------cCCcEEEEcccCChHHHHHHhc
Confidence 4578988877766665433 45567999999999999999999987622 2239999998764211
Q ss_pred -----cccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCC-------------CeEEE
Q 002012 341 -----CYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRG-------------ELRCI 402 (982)
Q Consensus 341 -----~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g-------------~i~vI 402 (982)
.+.|.... -...|.. .+++ .||||||+.+. .+.+..|+++++.+ ++++|
T Consensus 201 g~~~g~~tga~~~-~~g~~~~---a~~g-tlfldei~~l~--------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii 267 (368)
T 3dzd_A 201 GHEKGAFTGALTR-KKGKLEL---ADQG-TLFLDEVGELD--------QRVQAKLLRVLETGSFTRLGGNQKIEVDIRVI 267 (368)
T ss_dssp EECSCSSSSCCCC-EECHHHH---TTTS-EEEEETGGGSC--------HHHHHHHHHHHHHSEECCBTCCCBEECCCEEE
T ss_pred CccccccCCcccc-cCChHhh---cCCC-eEEecChhhCC--------HHHHHHHHHHHHhCCcccCCCCcceeeeeEEE
Confidence 01111100 0122322 2333 79999999996 67888899999755 46799
Q ss_pred EecCchhHhh--hhhcChHHHhccceEEecCCC----HHHHHHHHHHHHHHHhhhcC---CccChHHHHHHHHHh
Q 002012 403 GATTLNEYRN--YIEKDPALERRFQQVFCDQPS----VENTISILRGLRERYELHHG---VKISDSALVSAAVLA 468 (982)
Q Consensus 403 ~at~~~~~~~--~~~~d~al~rRf~~i~i~~Ps----~~e~~~IL~~~~~~~~~~~~---v~i~~~~l~~~~~~s 468 (982)
++||.+.... .-...+.|..|+..+.+..|+ .+|+..+++.+..++...++ ..++++++..+..+.
T Consensus 268 ~at~~~l~~~v~~g~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~ 342 (368)
T 3dzd_A 268 SATNKNLEEEIKKGNFREDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQE 342 (368)
T ss_dssp EEESSCHHHHHHTTSSCHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTCC
T ss_pred EecCCCHHHHHHcCCccHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCC
Confidence 9999875332 113467888899866666665 36777888888888776554 458999999888774
No 170
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.97 E-value=9e-09 Score=115.15 Aligned_cols=183 Identities=15% Similarity=0.221 Sum_probs=116.8
Q ss_pred CCcccchHHHHHHHHHhccCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEeccccc------c----
Q 002012 269 DPVIGRDDEIRRCIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLV------A---- 338 (982)
Q Consensus 269 ~~liG~~~~i~~l~~~L~~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~------~---- 338 (982)
+.++||+++++.+.+.+... ..++++||+|+|||++++.+++.. + ++++++.... .
T Consensus 12 ~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~----------~--~~~~~~~~~~~~~~~~~~~~~ 77 (350)
T 2qen_A 12 EDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER----------P--GILIDCRELYAERGHITREEL 77 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS----------S--EEEEEHHHHHHTTTCBCHHHH
T ss_pred HhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc----------C--cEEEEeecccccccCCCHHHH
Confidence 45899999999999988763 688999999999999999999875 2 4555543221 0
Q ss_pred -------------------------cccc---cccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHH
Q 002012 339 -------------------------GTCY---RGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNML 390 (982)
Q Consensus 339 -------------------------~~~~---~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L 390 (982)
+... ...+...+ ..+.......++.+|+|||+|.+..... ....+....|
T Consensus 78 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~vlvlDe~~~~~~~~~-~~~~~~~~~L 155 (350)
T 2qen_A 78 IKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVF-RELNDLGEELGEFIVAFDEAQYLRFYGS-RGGKELLALF 155 (350)
T ss_dssp HHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHH-HHHHHHHHHHSCEEEEEETGGGGGGBTT-TTTHHHHHHH
T ss_pred HHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHH-HHHHHHHhccCCEEEEEeCHHHHhccCc-cchhhHHHHH
Confidence 0000 01122222 1222221112378999999999864110 1124556667
Q ss_pred HhhhcC-CCeEEEEecCchhH-hhh---hhcChHHHhcc-ceEEecCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHH
Q 002012 391 KPMLGR-GELRCIGATTLNEY-RNY---IEKDPALERRF-QQVFCDQPSVENTISILRGLRERYELHHGVKISDSALVSA 464 (982)
Q Consensus 391 ~~~le~-g~i~vI~at~~~~~-~~~---~~~d~al~rRf-~~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~ 464 (982)
..+.+. ..+.+|.++..... ... ......+..|+ ..+.+.+.+.++..+++...... .+..++++.+..+
T Consensus 156 ~~~~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~----~~~~~~~~~~~~i 231 (350)
T 2qen_A 156 AYAYDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFRE----VNLDVPENEIEEA 231 (350)
T ss_dssp HHHHHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHT----TTCCCCHHHHHHH
T ss_pred HHHHHhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHH
Confidence 666654 57888888776542 222 12233455555 48899999999999988765443 4666888888888
Q ss_pred HHHhhhh
Q 002012 465 AVLADRY 471 (982)
Q Consensus 465 ~~~s~r~ 471 (982)
+..+.++
T Consensus 232 ~~~tgG~ 238 (350)
T 2qen_A 232 VELLDGI 238 (350)
T ss_dssp HHHHTTC
T ss_pred HHHhCCC
Confidence 8887654
No 171
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.92 E-value=1.3e-08 Score=114.13 Aligned_cols=178 Identities=16% Similarity=0.178 Sum_probs=112.3
Q ss_pred CCcccchHHHHHHHHHhccCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEeccccc-----cccc--
Q 002012 269 DPVIGRDDEIRRCIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLV-----AGTC-- 341 (982)
Q Consensus 269 ~~liG~~~~i~~l~~~L~~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~-----~~~~-- 341 (982)
+.++||+++++.+.. +.. +.++++||+|+|||++++.+++.+ +..++++++.... ....
T Consensus 13 ~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 78 (357)
T 2fna_A 13 KDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINEL----------NLPYIYLDLRKFEERNYISYKDFL 78 (357)
T ss_dssp GGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHH----------TCCEEEEEGGGGTTCSCCCHHHHH
T ss_pred HHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhc----------CCCEEEEEchhhccccCCCHHHHH
Confidence 458999999999999 765 588899999999999999999887 2345666654320 0000
Q ss_pred -----------------------c-----cc---c------HHHHHHHHHHHHHhcC-CCeEEEEccchhhhhCCCCCch
Q 002012 342 -----------------------Y-----RG---D------FEKRLKAVLKEVTKSN-GQIILFIDELHTIIGAGNQSGA 383 (982)
Q Consensus 342 -----------------------~-----~g---~------~e~~l~~l~~~~~~~~-~~~IL~IDEi~~l~~~~~~~~~ 383 (982)
. .+ . ....+..++..+.... ++++|+|||+|.+.... +
T Consensus 79 ~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~----~ 154 (357)
T 2fna_A 79 LELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLR----G 154 (357)
T ss_dssp HHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCT----T
T ss_pred HHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccC----c
Confidence 0 00 0 0112344555554432 48899999999986421 1
Q ss_pred hhHHHHHHhhhcC-CCeEEEEecCchhH-hhh---hhcChHHHhcc-ceEEecCCCHHHHHHHHHHHHHHHhhhcCCccC
Q 002012 384 MDASNMLKPMLGR-GELRCIGATTLNEY-RNY---IEKDPALERRF-QQVFCDQPSVENTISILRGLRERYELHHGVKIS 457 (982)
Q Consensus 384 ~~~~~~L~~~le~-g~i~vI~at~~~~~-~~~---~~~d~al~rRf-~~i~i~~Ps~~e~~~IL~~~~~~~~~~~~v~i~ 457 (982)
.++...|..+.+. ..+.+|++++.... ... ......+..|+ ..+.+.+.+.++..+++...... .+...+
T Consensus 155 ~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~----~~~~~~ 230 (357)
T 2fna_A 155 VNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQE----ADIDFK 230 (357)
T ss_dssp CCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHH----HTCCCC
T ss_pred hhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHH----cCCCCC
Confidence 2334555555543 47888888876542 222 12233455565 58999999999999999765544 244444
Q ss_pred hHHHHHHHHHhhh
Q 002012 458 DSALVSAAVLADR 470 (982)
Q Consensus 458 ~~~l~~~~~~s~r 470 (982)
+. ..++..+.+
T Consensus 231 ~~--~~i~~~t~G 241 (357)
T 2fna_A 231 DY--EVVYEKIGG 241 (357)
T ss_dssp CH--HHHHHHHCS
T ss_pred cH--HHHHHHhCC
Confidence 33 555666554
No 172
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=98.85 E-value=1.4e-09 Score=124.38 Aligned_cols=121 Identities=28% Similarity=0.470 Sum_probs=71.4
Q ss_pred HHHHHhhhcccccchHHHHHHHHHHHHH--hcCCC---CCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEec
Q 002012 655 VMLEEVLHKRVIGQDIAVKSVADAIRRS--RAGLS---DPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDM 729 (982)
Q Consensus 655 ~~l~~~l~~~iiGq~~a~~~l~~~i~~~--~~g~~---~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~ 729 (982)
..+.+.|.+.|+||+++++.|..++... +.+.. ....+..++||+||||||||++|+++|+.+ +.+|+.+++
T Consensus 7 ~~i~~~Ld~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l---~~~~~~v~~ 83 (444)
T 1g41_A 7 REIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA---NAPFIKVEA 83 (444)
T ss_dssp HHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHT---TCCEEEEEG
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHc---CCCceeecc
Confidence 3567778899999999999999888542 11111 111233469999999999999999999998 789999999
Q ss_pred cccccccccccccCCCCCccccccCCchhHHHhhCCCeEEEEccccccCH--------HHHHHHHHhhh
Q 002012 730 SEYMEKHSVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEIEKAHQ--------DVFNILLQLLD 790 (982)
Q Consensus 730 s~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~~~~~Vl~lDEidkl~~--------~~~~~Ll~~le 790 (982)
+.+.. .+|+|.+....+...+..+ ..++++||++.... .+.+.|+..|+
T Consensus 84 ~~~~~-----------~g~vG~d~e~~lr~lf~~a-~~~~~~De~d~~~~~~~~~~e~rvl~~LL~~~d 140 (444)
T 1g41_A 84 TKFTE-----------VGYVGKEVDSIIRDLTDSA-MKLVRQQEIAKNRARAEDVAEERILDALLPPAK 140 (444)
T ss_dssp GGGC---------------CCCCTHHHHHHHHHHH-HHHHHHHHHHSCC--------------------
T ss_pred hhhcc-----------cceeeccHHHHHHHHHHHH-HhcchhhhhhhhhccchhhHHHHHHHHHHHHhh
Confidence 87643 2456643222222222221 12445788876543 36666776666
No 173
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.84 E-value=1.2e-08 Score=117.15 Aligned_cols=218 Identities=16% Similarity=0.163 Sum_probs=131.0
Q ss_pred cccccchHHHHHHHHHH-HHHhcCCCCCCCCCceEEe--ecCCCCchHHHHHHHHHHhcCC------CCceEEEeccccc
Q 002012 663 KRVIGQDIAVKSVADAI-RRSRAGLSDPARPIASFMF--MGPTGVGKTELGKALADFLFNT------ENALVRIDMSEYM 733 (982)
Q Consensus 663 ~~iiGq~~a~~~l~~~i-~~~~~g~~~~~~p~~~lLf--~Gp~GtGKT~lA~~la~~l~~~------~~~~v~i~~s~~~ 733 (982)
..++|++..++.|...+ .....+.. ....++++ +||+|+|||++++.+++.+... +..++.++|....
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~---~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAG---LSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAP 98 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSC---BCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCC
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCC---CCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCC
Confidence 67999999999999988 76644311 11235888 9999999999999999887321 3467888886543
Q ss_pred ccccc-c---cccCCCCCcccccc---CCchhHHHhh-CCCeEEEEccccccC------HHHHHHHHHhhhcCceecCCC
Q 002012 734 EKHSV-S---RLVGAPPGYVGYEE---GGQLTEVVRR-RPYSVVLFDEIEKAH------QDVFNILLQLLDDGRITDSQG 799 (982)
Q Consensus 734 ~~~~~-~---~l~g~~~g~vg~~~---~~~l~~~l~~-~~~~Vl~lDEidkl~------~~~~~~Ll~~le~g~~~d~~g 799 (982)
....+ . ..+|.+....+... ...+...+.. ....||+|||++.+. .+.+..|+..+++.... +
T Consensus 99 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~---~ 175 (412)
T 1w5s_A 99 NLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSR---D 175 (412)
T ss_dssp SHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCT---T
T ss_pred CHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccC---C
Confidence 22111 1 11233211111111 1123333332 345799999999974 47777777777642100 0
Q ss_pred cEEecccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcC---hHHHhccccccccCCCChhHHHHHH
Q 002012 800 RTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFR---PEFLNRIDEYIVFQPLDSKEISKIV 876 (982)
Q Consensus 800 ~~~~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~---p~ll~Rid~ii~F~pl~~~~l~~il 876 (982)
. -.++.||+|++... +.+. +. +.+.+++...+.|+||+.+++.+++
T Consensus 176 ~---~~~v~lI~~~~~~~--~~~~--------------------------l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll 224 (412)
T 1w5s_A 176 G---VNRIGFLLVASDVR--ALSY--------------------------MREKIPQVESQIGFKLHLPAYKSRELYTIL 224 (412)
T ss_dssp S---CCBEEEEEEEEETH--HHHH--------------------------HHHHCHHHHTTCSEEEECCCCCHHHHHHHH
T ss_pred C---CceEEEEEEecccc--HHHH--------------------------HhhhcchhhhhcCCeeeeCCCCHHHHHHHH
Confidence 0 13578888887432 1110 12 4455565445899999999999999
Q ss_pred HHHHHHHHHHHHhCCCCccCCHHHHHHHHhcCCCCC---CCchHHHHHHHH
Q 002012 877 EIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPN---FGARPVKRVIQQ 924 (982)
Q Consensus 877 ~~~l~~~~~~~~~~~~~l~i~~~a~~~L~~~~~~~~---~gaR~L~~~i~~ 924 (982)
...+... +....+++++++.+...+.... ...|.+..++..
T Consensus 225 ~~~~~~~-------~~~~~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~ 268 (412)
T 1w5s_A 225 EQRAELG-------LRDTVWEPRHLELISDVYGEDKGGDGSARRAIVALKM 268 (412)
T ss_dssp HHHHHHH-------BCTTSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHH
T ss_pred HHHHHhc-------CCCCCCChHHHHHHHHHHHHhccCCCcHHHHHHHHHH
Confidence 8776531 1224588999988887644110 123555555554
No 174
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.73 E-value=7.4e-08 Score=109.19 Aligned_cols=204 Identities=17% Similarity=0.136 Sum_probs=115.6
Q ss_pred CcccchHHHHHHHHHhccCC-----CCCcEEeCCCCCcHHHHHHHH-HHHhhcCCCCCCCCCCeEEEEecc----ccccc
Q 002012 270 PVIGRDDEIRRCIQILSRRT-----KNNPVIIGEPGVGKTAIAEGL-AQRIVRGDVPETLQNRKLISLDMA----SLVAG 339 (982)
Q Consensus 270 ~liG~~~~i~~l~~~L~~~~-----~~~iLL~GppGvGKT~la~~l-a~~l~~~~~p~~l~~~~v~~l~~~----~l~~~ 339 (982)
+++|+++..+.++-.|..+. .-|+||+|+||| ||.+|+++ ++.+ ...++..... .+...
T Consensus 214 pI~G~e~vK~aLll~L~GG~~k~rgdihVLL~G~PGt-KS~Lar~i~~~i~----------pR~~ft~g~~ss~~gLt~s 282 (506)
T 3f8t_A 214 PLPGAEEVGKMLALQLFSCVGKNSERLHVLLAGYPVV-CSEILHHVLDHLA----------PRGVYVDLRRTELTDLTAV 282 (506)
T ss_dssp CSTTCHHHHHHHHHHHTTCCSSGGGCCCEEEESCHHH-HHHHHHHHHHHTC----------SSEEEEEGGGCCHHHHSEE
T ss_pred ccCCCHHHHHHHHHHHcCCccccCCceeEEEECCCCh-HHHHHHHHHHHhC----------CCeEEecCCCCCccCceEE
Confidence 38999886554544444321 238999999999 99999999 6654 1122221110 01110
Q ss_pred ccc-cccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCC-----------CeEEEEecCc
Q 002012 340 TCY-RGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRG-----------ELRCIGATTL 407 (982)
Q Consensus 340 ~~~-~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g-----------~i~vI~at~~ 407 (982)
... .| +.-+ .+. +..++++ |+|||||+.+. ...+..|++.|+.+ ++.+|+|+|+
T Consensus 283 ~r~~tG-~~~~-~G~---l~LAdgG-vl~lDEIn~~~--------~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP 348 (506)
T 3f8t_A 283 LKEDRG-WALR-AGA---AVLADGG-ILAVDHLEGAP--------EPHRWALMEAMDKGTVTVDGIALNARCAVLAAINP 348 (506)
T ss_dssp EEESSS-EEEE-ECH---HHHTTTS-EEEEECCTTCC--------HHHHHHHHHHHHHSEEEETTEEEECCCEEEEEECC
T ss_pred EEcCCC-cccC-CCe---eEEcCCC-eeehHhhhhCC--------HHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCc
Confidence 000 01 1000 011 1112333 89999999985 66778899999865 5789999998
Q ss_pred hhHh------hhhhcChHHHhccceE--EecCCCHHHH---------HHHHHHHHHHHh-hhcCCccChHHHHHHHHHhh
Q 002012 408 NEYR------NYIEKDPALERRFQQV--FCDQPSVENT---------ISILRGLRERYE-LHHGVKISDSALVSAAVLAD 469 (982)
Q Consensus 408 ~~~~------~~~~~d~al~rRf~~i--~i~~Ps~~e~---------~~IL~~~~~~~~-~~~~v~i~~~~l~~~~~~s~ 469 (982)
.+.. ..+.+++++++||+.+ .+..|+.++- .+.|+.+...-. ....+.+++++.++++++..
T Consensus 349 ~~~yd~~~s~~~~~Lp~alLDRFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~ 428 (506)
T 3f8t_A 349 GEQWPSDPPIARIDLDQDFLSHFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWYE 428 (506)
T ss_dssp CC--CCSCGGGGCCSCHHHHTTCSEEEETTC--------------CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHH
T ss_pred ccccCCCCCccccCCChHHhhheeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHHH
Confidence 7511 1247899999999743 3455653321 122232222211 12467889998888877632
Q ss_pred hh------------hccCCCcchhhHHHHHHHHHhhhhccC
Q 002012 470 RY------------ITERFLPDKAIDLVDEAAAKLKMEITS 498 (982)
Q Consensus 470 r~------------i~~~~~p~~a~~lld~a~~~~~~~~~~ 498 (982)
.. ......|+....|+.-|-+.+++....
T Consensus 429 ~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~ 469 (506)
T 3f8t_A 429 TRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSD 469 (506)
T ss_dssp HHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCS
T ss_pred HHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcC
Confidence 11 222445667777777777777766553
No 175
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.70 E-value=6.7e-08 Score=125.82 Aligned_cols=84 Identities=17% Similarity=0.228 Sum_probs=54.6
Q ss_pred EEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccc-------cccccccCCCCCccccccCCchhHHHhhCCCeE
Q 002012 696 FMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEK-------HSVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSV 768 (982)
Q Consensus 696 lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~-------~~~~~l~g~~~g~vg~~~~~~l~~~l~~~~~~V 768 (982)
++++||||||||.+|++++...-..+.+.+.|+..+..+. ++++++++..|.. +...-..+...++....++
T Consensus 1085 ~l~~G~~g~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~-~e~~l~~~~~~ar~~~~~~ 1163 (1706)
T 3cmw_A 1085 VEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDT-GEQALEICDALARSGAVDV 1163 (1706)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSS-HHHHHHHHHHHHHHTCCSE
T ss_pred EEEEcCCCCChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccc-hHHHHHHHHHHHHhcCCeE
Confidence 9999999999999999999876444677777887664321 1223344432211 1111123455566788899
Q ss_pred EEEccccccCHH
Q 002012 769 VLFDEIEKAHQD 780 (982)
Q Consensus 769 l~lDEidkl~~~ 780 (982)
+|+|+++.+.|.
T Consensus 1164 i~~d~~~al~~~ 1175 (1706)
T 3cmw_A 1164 IVVDSVAALTPK 1175 (1706)
T ss_dssp EEESCGGGCCCH
T ss_pred EEeCchHhcCcc
Confidence 999999866443
No 176
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.69 E-value=3.6e-08 Score=101.44 Aligned_cols=100 Identities=20% Similarity=0.232 Sum_probs=62.9
Q ss_pred HHhhcCCCCCcccchH----HHHHHHHHhccCC----CCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEe
Q 002012 261 ELARSGKLDPVIGRDD----EIRRCIQILSRRT----KNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLD 332 (982)
Q Consensus 261 ~~~~~~~l~~liG~~~----~i~~l~~~L~~~~----~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~ 332 (982)
..+++.+|+++++.+. .++.+...+.... +.+++|+||||||||++|++++..+... +..++.++
T Consensus 17 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~-------~~~~~~~~ 89 (202)
T 2w58_A 17 REILRASLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKR-------NVSSLIVY 89 (202)
T ss_dssp GGGGCCCTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTT-------TCCEEEEE
T ss_pred HHHHcCCHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc-------CCeEEEEE
Confidence 3445678899988664 3344444444331 2689999999999999999999988543 56777777
Q ss_pred ccccccccc--c-cccHHHHHHHHHHHHHhcCCCeEEEEccchhh
Q 002012 333 MASLVAGTC--Y-RGDFEKRLKAVLKEVTKSNGQIILFIDELHTI 374 (982)
Q Consensus 333 ~~~l~~~~~--~-~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l 374 (982)
+..+..... + .+. +..++..+... .+|||||++..
T Consensus 90 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~---~~lilDei~~~ 127 (202)
T 2w58_A 90 VPELFRELKHSLQDQT----MNEKLDYIKKV---PVLMLDDLGAE 127 (202)
T ss_dssp HHHHHHHHHHC---CC----CHHHHHHHHHS---SEEEEEEECCC
T ss_pred hHHHHHHHHHHhccch----HHHHHHHhcCC---CEEEEcCCCCC
Confidence 665442110 0 111 12334444432 29999999764
No 177
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.68 E-value=2.6e-08 Score=100.56 Aligned_cols=103 Identities=17% Similarity=0.230 Sum_probs=67.6
Q ss_pred eEEeecCCCCchHHHHHHHHHHhc-CCCCceEEEeccccccccccccccCCCCCccccccCCchhHHHhhCCCeEEEEcc
Q 002012 695 SFMFMGPTGVGKTELGKALADFLF-NTENALVRIDMSEYMEKHSVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDE 773 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~-~~~~~~v~i~~s~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~~~~~Vl~lDE 773 (982)
+++|+||+|||||+++++++..+. ..+..++.+++.++..... ..+.. .....+...+.. ..+|+|||
T Consensus 40 ~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~-------~~~~~~~~~~~~--~~llilDE 108 (180)
T 3ec2_A 40 GLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLK--HLMDE-------GKDTKFLKTVLN--SPVLVLDD 108 (180)
T ss_dssp EEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHH--HHHHH-------TCCSHHHHHHHT--CSEEEEET
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHH--HHhcC-------chHHHHHHHhcC--CCEEEEeC
Confidence 599999999999999999999885 4455666777766543210 00000 001123344443 35999999
Q ss_pred cc--ccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCChH
Q 002012 774 IE--KAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSH 818 (982)
Q Consensus 774 id--kl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~ 818 (982)
++ .+++..++.|.++++... -.+..+|+|||...+
T Consensus 109 ~~~~~~~~~~~~~l~~ll~~~~----------~~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 109 LGSERLSDWQRELISYIITYRY----------NNLKSTIITTNYSLQ 145 (180)
T ss_dssp CSSSCCCHHHHHHHHHHHHHHH----------HTTCEEEEECCCCSC
T ss_pred CCCCcCCHHHHHHHHHHHHHHH----------HcCCCEEEEcCCChh
Confidence 98 567888888888886411 023678889997654
No 178
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.62 E-value=1.9e-08 Score=103.56 Aligned_cols=108 Identities=19% Similarity=0.246 Sum_probs=67.1
Q ss_pred eEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccccccccCCCCCccccccCCchhHHHhhCCCeEEEEccc
Q 002012 695 SFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEI 774 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~~~~~Vl~lDEi 774 (982)
+++|+||||||||++|++++..+...+.+++.++++++.... ...+.. .....+.+.+... .+|+|||+
T Consensus 56 ~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-------~~~~~~~~~~~~~--~~lilDei 124 (202)
T 2w58_A 56 GLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFREL--KHSLQD-------QTMNEKLDYIKKV--PVLMLDDL 124 (202)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHH--HHC----------CCCHHHHHHHHHS--SEEEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHH--HHHhcc-------chHHHHHHHhcCC--CEEEEcCC
Confidence 599999999999999999999987667788888887654321 000100 0011234445554 49999999
Q ss_pred cccCH--HHHHHHH-HhhhcCceecCCCcEEecccEEEEEecCCChHHHHHh
Q 002012 775 EKAHQ--DVFNILL-QLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILET 823 (982)
Q Consensus 775 dkl~~--~~~~~Ll-~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~i~~~ 823 (982)
+.... ..+..|+ .+++... ..+..+|+|||.....+...
T Consensus 125 ~~~~~~~~~~~~ll~~~l~~~~----------~~~~~~i~tsn~~~~~l~~~ 166 (202)
T 2w58_A 125 GAEAMSSWVRDDVFGPILQYRM----------FENLPTFFTSNFDMQQLAHH 166 (202)
T ss_dssp CCC---CCGGGTTHHHHHHHHH----------HTTCCEEEEESSCHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHHHH----------hCCCCEEEEcCCCHHHHHHH
Confidence 76543 2344344 3554310 02357899999887765543
No 179
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=98.61 E-value=6.7e-08 Score=94.12 Aligned_cols=65 Identities=25% Similarity=0.352 Sum_probs=61.8
Q ss_pred cccHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhcCCCcHHHHHHHHcCCChHHHHHHHHHhhc
Q 002012 96 EFTEKAWEGIVGAVDAARVNNQQVVETEHLMKALLEQKDGLARRILTKAGQDNTKVLQATEDFIS 160 (982)
Q Consensus 96 ~ft~~a~~~l~~A~~~A~~~~~~~v~~eHlLlaLl~~~~~~~~~iL~~~gv~~~~l~~~~~~~~~ 160 (982)
.||+.++++|+.|..+|+.+|+.+|++||||+||++++++.+.++|+++|||.+.+++++...++
T Consensus 81 ~~s~~~~~vL~~A~~~a~~~~~~~i~~eHlLlall~~~~~~a~~iL~~~gv~~~~l~~~l~~~~g 145 (146)
T 3fh2_A 81 PFTPRAKKVLELSLREGLQMGHKYIGTEFLLLGLIREGEGVAAQVLVKLGADLPRVRQQVIQLLS 145 (146)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCSSHHHHHHHHHTCCHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHhCCCcHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 59999999999999999999999999999999999999999999999999999999999987653
No 180
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=98.60 E-value=4.6e-08 Score=95.17 Aligned_cols=64 Identities=22% Similarity=0.317 Sum_probs=61.0
Q ss_pred cccHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhcCCCcHHHHHHHHcCCChHHHHHHHHHhh
Q 002012 96 EFTEKAWEGIVGAVDAARVNNQQVVETEHLMKALLEQKDGLARRILTKAGQDNTKVLQATEDFI 159 (982)
Q Consensus 96 ~ft~~a~~~l~~A~~~A~~~~~~~v~~eHlLlaLl~~~~~~~~~iL~~~gv~~~~l~~~~~~~~ 159 (982)
.||+.++++|+.|..+|+++|+.+|++||||+||+.++++.+.++|+++||+.+.+++++...+
T Consensus 81 ~~s~~~~~vl~~A~~~A~~~~~~~v~~eHlLlAll~~~~~~a~~iL~~~gv~~~~l~~~i~~~~ 144 (145)
T 3fes_A 81 VLSPRSKQILELSGMFANKLKTNYIGTEHILLAIIQEGEGIANKILNYAGVNDRTLAQLTIDMM 144 (145)
T ss_dssp EECHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhCCCcHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 5999999999999999999999999999999999999999999999999999999999987754
No 181
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.56 E-value=3e-08 Score=100.15 Aligned_cols=131 Identities=16% Similarity=0.159 Sum_probs=71.9
Q ss_pred HhhcCCCCCcccchH----HHHHHHHHhc---cCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecc
Q 002012 262 LARSGKLDPVIGRDD----EIRRCIQILS---RRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMA 334 (982)
Q Consensus 262 ~~~~~~l~~liG~~~----~i~~l~~~L~---~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~ 334 (982)
++++.+|+++++... .++.+.+.+. ...+.+++|+||||+||||++++++..+... .+..++.+++.
T Consensus 3 r~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~------~g~~~~~~~~~ 76 (180)
T 3ec2_A 3 RYWNANLDTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEK------KGIRGYFFDTK 76 (180)
T ss_dssp SCTTCCSSSCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHH------SCCCCCEEEHH
T ss_pred hhhhCccccccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHH------cCCeEEEEEHH
Confidence 456778999887433 3333333332 2345689999999999999999999988521 14455566655
Q ss_pred cccccccccccHHH-HHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhc---CCCeEEEEecCchh
Q 002012 335 SLVAGTCYRGDFEK-RLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLG---RGELRCIGATTLNE 409 (982)
Q Consensus 335 ~l~~~~~~~g~~e~-~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le---~g~i~vI~at~~~~ 409 (982)
.+.... ...+.. ....++..+. .+.+|+|||++... .+......|..+++ .....+|.+||...
T Consensus 77 ~~~~~~--~~~~~~~~~~~~~~~~~---~~~llilDE~~~~~------~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 77 DLIFRL--KHLMDEGKDTKFLKTVL---NSPVLVLDDLGSER------LSDWQRELISYIITYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp HHHHHH--HHHHHHTCCSHHHHHHH---TCSEEEEETCSSSC------CCHHHHHHHHHHHHHHHHTTCEEEEECCCCS
T ss_pred HHHHHH--HHHhcCchHHHHHHHhc---CCCEEEEeCCCCCc------CCHHHHHHHHHHHHHHHHcCCCEEEEcCCCh
Confidence 443210 000000 0002233332 34499999998531 01222233433332 23456677777654
No 182
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.55 E-value=1e-07 Score=125.28 Aligned_cols=83 Identities=17% Similarity=0.179 Sum_probs=52.5
Q ss_pred eEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccccccccCCCCC-------ccccccCCchhHHHhhCCCe
Q 002012 695 SFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRLVGAPPG-------YVGYEEGGQLTEVVRRRPYS 767 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l~g~~~g-------~vg~~~~~~l~~~l~~~~~~ 767 (982)
+++|+||||||||++|.+++......+..+..+++.+...... .+-.|.... +.+..-...+...++....+
T Consensus 1429 ~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~-a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr~~~~~ 1507 (2050)
T 3cmu_A 1429 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY-ARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVD 1507 (2050)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHH-HHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTCCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHH-HHHcCCCchhceeecCChHHHHHHHHHHHHhcCCCC
Confidence 5999999999999999999988766667788888776432221 122231100 01111112233455567789
Q ss_pred EEEEccccccC
Q 002012 768 VVLFDEIEKAH 778 (982)
Q Consensus 768 Vl~lDEidkl~ 778 (982)
+||||+++.+-
T Consensus 1508 lVVIDsi~al~ 1518 (2050)
T 3cmu_A 1508 VIVVDSVAALT 1518 (2050)
T ss_dssp EEEESCGGGCC
T ss_pred EEEEcChhHhc
Confidence 99999997443
No 183
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.54 E-value=9.5e-08 Score=93.37 Aligned_cols=106 Identities=12% Similarity=0.160 Sum_probs=68.0
Q ss_pred CCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccccccccccHHHHHHHHHHHHHhcCCCeEEEE
Q 002012 289 TKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFI 368 (982)
Q Consensus 289 ~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~I 368 (982)
....++|+||+|+|||+++++++..+.. .+..++.++...+... .+ + ..+.+|+|
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~-------~g~~~~~~~~~~~~~~------------~~---~---~~~~lLil 89 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE-------AGKNAAYIDAASMPLT------------DA---A---FEAEYLAV 89 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT-------TTCCEEEEETTTSCCC------------GG---G---GGCSEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh-------cCCcEEEEcHHHhhHH------------HH---H---hCCCEEEE
Confidence 5567889999999999999999998853 2556777776655422 00 1 12349999
Q ss_pred ccchhhhhCCCCCchhhHHHHHHhhhcCCCeEEEEecCchhHhhhhhcChHHHhccc
Q 002012 369 DELHTIIGAGNQSGAMDASNMLKPMLGRGELRCIGATTLNEYRNYIEKDPALERRFQ 425 (982)
Q Consensus 369 DEi~~l~~~~~~~~~~~~~~~L~~~le~g~i~vI~at~~~~~~~~~~~d~al~rRf~ 425 (982)
||++.+.... ...+.+++....++|..++|.+++... ..+... +.+.+||.
T Consensus 90 DE~~~~~~~~----~~~l~~li~~~~~~g~~~iiits~~~p-~~l~~~-~~L~SRl~ 140 (149)
T 2kjq_A 90 DQVEKLGNEE----QALLFSIFNRFRNSGKGFLLLGSEYTP-QQLVIR-EDLRTRMA 140 (149)
T ss_dssp ESTTCCCSHH----HHHHHHHHHHHHHHTCCEEEEEESSCT-TTSSCC-HHHHHHGG
T ss_pred eCccccChHH----HHHHHHHHHHHHHcCCcEEEEECCCCH-HHcccc-HHHHHHHh
Confidence 9998753211 233445555555666653555665432 112233 99999985
No 184
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.47 E-value=8.8e-08 Score=105.44 Aligned_cols=100 Identities=13% Similarity=0.227 Sum_probs=57.6
Q ss_pred hcCCCCCcccch----HHHHHHHHHhccC---CCCCcEEeCCCCCcHHHHHHHHHHHhh-cCCCCCCCCCCeEEEEeccc
Q 002012 264 RSGKLDPVIGRD----DEIRRCIQILSRR---TKNNPVIIGEPGVGKTAIAEGLAQRIV-RGDVPETLQNRKLISLDMAS 335 (982)
Q Consensus 264 ~~~~l~~liG~~----~~i~~l~~~L~~~---~~~~iLL~GppGvGKT~la~~la~~l~-~~~~p~~l~~~~v~~l~~~~ 335 (982)
++.+|+++++.. ..+..+...+... ...+++|+||||||||++|.+++..+. .. +..++.+++..
T Consensus 119 ~~~tfd~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~-------g~~v~~~~~~~ 191 (308)
T 2qgz_A 119 RHIHLSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKK-------GVSTTLLHFPS 191 (308)
T ss_dssp GSCCGGGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHS-------CCCEEEEEHHH
T ss_pred HhCCHhhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhc-------CCcEEEEEHHH
Confidence 345666666533 2333344444432 257899999999999999999999986 43 56777777665
Q ss_pred ccccccccccHHHHHHHHHHHHHhcCCCeEEEEccchhh
Q 002012 336 LVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTI 374 (982)
Q Consensus 336 l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l 374 (982)
+....... .....+...+..+... .+|||||++..
T Consensus 192 l~~~l~~~-~~~~~~~~~~~~~~~~---~lLiiDdig~~ 226 (308)
T 2qgz_A 192 FAIDVKNA-ISNGSVKEEIDAVKNV---PVLILDDIGAE 226 (308)
T ss_dssp HHHHHHCC-CC----CCTTHHHHTS---SEEEEETCCC-
T ss_pred HHHHHHHH-hccchHHHHHHHhcCC---CEEEEcCCCCC
Confidence 44211000 0000112233333332 38999999754
No 185
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.46 E-value=1.6e-07 Score=91.79 Aligned_cols=89 Identities=16% Similarity=0.204 Sum_probs=62.7
Q ss_pred eEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccccccccCCCCCccccccCCchhHHHhhCCCeEEEEccc
Q 002012 695 SFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEI 774 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~~~~~Vl~lDEi 774 (982)
.++|+||+|+|||+++++++..+...+...+.+++.++... ..+. ...+|+|||+
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~-----------------------~~~~--~~~lLilDE~ 92 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT-----------------------DAAF--EAEYLAVDQV 92 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC-----------------------GGGG--GCSEEEEEST
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH-----------------------HHHh--CCCEEEEeCc
Confidence 48999999999999999999988655555777777655321 0112 2359999999
Q ss_pred cccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCCh
Q 002012 775 EKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGS 817 (982)
Q Consensus 775 dkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~ 817 (982)
+.+.+..+..|+++++.-. . -..+++|+|||...
T Consensus 93 ~~~~~~~~~~l~~li~~~~--~-------~g~~~iiits~~~p 126 (149)
T 2kjq_A 93 EKLGNEEQALLFSIFNRFR--N-------SGKGFLLLGSEYTP 126 (149)
T ss_dssp TCCCSHHHHHHHHHHHHHH--H-------HTCCEEEEEESSCT
T ss_pred cccChHHHHHHHHHHHHHH--H-------cCCcEEEEECCCCH
Confidence 9998877888888876411 0 01234777888654
No 186
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=98.45 E-value=3e-07 Score=89.85 Aligned_cols=66 Identities=27% Similarity=0.392 Sum_probs=62.0
Q ss_pred cccHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhcCCCcHHHHHHHHcCCChHHHHHHHHHhhcc
Q 002012 96 EFTEKAWEGIVGAVDAARVNNQQVVETEHLMKALLEQKDGLARRILTKAGQDNTKVLQATEDFISK 161 (982)
Q Consensus 96 ~ft~~a~~~l~~A~~~A~~~~~~~v~~eHlLlaLl~~~~~~~~~iL~~~gv~~~~l~~~~~~~~~~ 161 (982)
.||+.++++|..|..+|+.+|+.+|++||||+||+.++++.+.++|+.+||+.+.+++.+....+.
T Consensus 79 ~~s~~~~~vL~~A~~~A~~~~~~~i~~ehlLlall~~~~~~a~~~L~~~gi~~~~l~~~i~~~~g~ 144 (150)
T 2y1q_A 79 HYTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGN 144 (150)
T ss_dssp EECHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCCSHHHHHHHHTTCCHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHhCCCcHHHHHHHHcCCCHHHHHHHHHHHHCC
Confidence 599999999999999999999999999999999999888888899999999999999999887654
No 187
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.45 E-value=9e-07 Score=99.02 Aligned_cols=162 Identities=11% Similarity=0.124 Sum_probs=109.9
Q ss_pred eEEeecCCCCchHHHHHHHHHHhcCCC-CceEEEeccccccccccccccCCCCCccccccCCchhHHHh----hCCCeEE
Q 002012 695 SFMFMGPTGVGKTELGKALADFLFNTE-NALVRIDMSEYMEKHSVSRLVGAPPGYVGYEEGGQLTEVVR----RRPYSVV 769 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~~~~-~~~v~i~~s~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~l~----~~~~~Vl 769 (982)
.+||+||+|.||++.++.+++.+.+.+ .++..+. + . +....+.+.+.+. .+++.|+
T Consensus 20 ~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~---~----------~------~~~~~~~l~~~~~~~plf~~~kvv 80 (343)
T 1jr3_D 20 AYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFS---I----------D------PNTDWNAIFSLCQAMSLFASRQTL 80 (343)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEE---C----------C------TTCCHHHHHHHHHHHHHCCSCEEE
T ss_pred EEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEE---e----------c------CCCCHHHHHHHhcCcCCccCCeEE
Confidence 499999999999999999999875322 1211111 0 0 0011122333333 2456799
Q ss_pred EEccccc-cCHHHHHHHHHhhhcCceecCCCcEEecccEEEEEecCC-ChHHHHHhhhhcccchHHHHHHHHHHHHHHHH
Q 002012 770 LFDEIEK-AHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNI-GSHYILETLQSVQDSKEAVYEVMKKQVVELAR 847 (982)
Q Consensus 770 ~lDEidk-l~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 847 (982)
+|||++. ++.+.++.|++++++- ..+++||++++. .... . +
T Consensus 81 ii~~~~~kl~~~~~~aLl~~le~p-----------~~~~~~il~~~~~~~~~---------~-----------------~ 123 (343)
T 1jr3_D 81 LLLLPENGPNAAINEQLLTLTGLL-----------HDDLLLIVRGNKLSKAQ---------E-----------------N 123 (343)
T ss_dssp EEECCSSCCCTTHHHHHHHHHTTC-----------BTTEEEEEEESCCCTTT---------T-----------------T
T ss_pred EEECCCCCCChHHHHHHHHHHhcC-----------CCCeEEEEEcCCCChhh---------H-----------------h
Confidence 9999999 9999999999999961 135777776653 2100 0 0
Q ss_pred hhcChHHHhccccccccCCCChhHHHHHHHHHHHHHHHHHHhCCCCccCCHHHHHHHHhcCCCCCCCchHHHHHHHHH
Q 002012 848 QTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQL 925 (982)
Q Consensus 848 ~~f~p~ll~Rid~ii~F~pl~~~~l~~il~~~l~~~~~~~~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~ 925 (982)
..+.+.+.+|+ .++.|.|++.+++...+...++. .| +.++++++++|+... .+ +.|.+.+.++++
T Consensus 124 ~k~~~~i~sr~-~~~~~~~l~~~~l~~~l~~~~~~-------~g--~~i~~~a~~~l~~~~-~g--dl~~~~~elekl 188 (343)
T 1jr3_D 124 AAWFTALANRS-VQVTCQTPEQAQLPRWVAARAKQ-------LN--LELDDAANQVLCYCY-EG--NLLALAQALERL 188 (343)
T ss_dssp SHHHHHHTTTC-EEEEECCCCTTHHHHHHHHHHHH-------TT--CEECHHHHHHHHHSS-TT--CHHHHHHHHHHH
T ss_pred hHHHHHHHhCc-eEEEeeCCCHHHHHHHHHHHHHH-------cC--CCCCHHHHHHHHHHh-ch--HHHHHHHHHHHH
Confidence 12456788898 68999999999999888877764 45 789999999999863 22 346666666663
No 188
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.44 E-value=8.6e-07 Score=99.16 Aligned_cols=169 Identities=12% Similarity=0.077 Sum_probs=114.8
Q ss_pred CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccccccccccHHHHHHHHHHHHHh---cCCCe
Q 002012 288 RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGTCYRGDFEKRLKAVLKEVTK---SNGQI 364 (982)
Q Consensus 288 ~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~~~~g~~e~~l~~l~~~~~~---~~~~~ 364 (982)
+-.+..||+||+|+||++.++.+++.+.+.+. ..+.++.++ +. .+ ++.+++.+.. .++.-
T Consensus 16 ~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~------~~---~~----~~~l~~~~~~~plf~~~k 78 (343)
T 1jr3_D 16 GLRAAYLLLGNDPLLLQESQDAVRQVAAAQGF----EEHHTFSID------PN---TD----WNAIFSLCQAMSLFASRQ 78 (343)
T ss_dssp CCCSEEEEEESCHHHHHHHHHHHHHHHHHHTC----CEEEEEECC------TT---CC----HHHHHHHHHHHHHCCSCE
T ss_pred CCCcEEEEECCcHHHHHHHHHHHHHHHHhCCC----CeeEEEEec------CC---CC----HHHHHHHhcCcCCccCCe
Confidence 44556788999999999999999998754321 011223222 11 12 2344444432 24566
Q ss_pred EEEEccchh-hhhCCCCCchhhHHHHHHhhhcC--CCeEEEEecCc-hhHhhhhhcChHHHhccceEEecCCCHHHHHHH
Q 002012 365 ILFIDELHT-IIGAGNQSGAMDASNMLKPMLGR--GELRCIGATTL-NEYRNYIEKDPALERRFQQVFCDQPSVENTISI 440 (982)
Q Consensus 365 IL~IDEi~~-l~~~~~~~~~~~~~~~L~~~le~--g~i~vI~at~~-~~~~~~~~~d~al~rRf~~i~i~~Ps~~e~~~I 440 (982)
|++|||+|. +. .+..+.|+.+++. ..+++|.+++. +.-.+...+.+++.+||..+.+..++.+++...
T Consensus 79 vvii~~~~~kl~--------~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~ 150 (343)
T 1jr3_D 79 TLLLLLPENGPN--------AAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRW 150 (343)
T ss_dssp EEEEECCSSCCC--------TTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHH
T ss_pred EEEEECCCCCCC--------hHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHH
Confidence 999999998 64 4566778888885 45666655543 221112245688999999999999999999988
Q ss_pred HHHHHHHHhhhcCCccChHHHHHHHHHhhhhhccCCCcchhhHHHHHHHHH
Q 002012 441 LRGLRERYELHHGVKISDSALVSAAVLADRYITERFLPDKAIDLVDEAAAK 491 (982)
Q Consensus 441 L~~~~~~~~~~~~v~i~~~~l~~~~~~s~r~i~~~~~p~~a~~lld~a~~~ 491 (982)
++..+.. .|+.++++++..++..+++. ...+...++..+..
T Consensus 151 l~~~~~~----~g~~i~~~a~~~l~~~~~gd------l~~~~~elekl~l~ 191 (343)
T 1jr3_D 151 VAARAKQ----LNLELDDAANQVLCYCYEGN------LLALAQALERLSLL 191 (343)
T ss_dssp HHHHHHH----TTCEECHHHHHHHHHSSTTC------HHHHHHHHHHHHHH
T ss_pred HHHHHHH----cCCCCCHHHHHHHHHHhchH------HHHHHHHHHHHHHh
Confidence 8877766 68999999999999987643 35666666666544
No 189
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.32 E-value=4.9e-07 Score=99.45 Aligned_cols=108 Identities=20% Similarity=0.253 Sum_probs=67.0
Q ss_pred ceEEeecCCCCchHHHHHHHHHHhc-CCCCceEEEeccccccccccccccCCC-CCccccccCCchhHHHhhCCCeEEEE
Q 002012 694 ASFMFMGPTGVGKTELGKALADFLF-NTENALVRIDMSEYMEKHSVSRLVGAP-PGYVGYEEGGQLTEVVRRRPYSVVLF 771 (982)
Q Consensus 694 ~~lLf~Gp~GtGKT~lA~~la~~l~-~~~~~~v~i~~s~~~~~~~~~~l~g~~-~g~vg~~~~~~l~~~l~~~~~~Vl~l 771 (982)
.+++|+||||||||++|.+++..+. ..+.+++.++++++... +.+.. .+. ...+.+.+...+ ||||
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~-----l~~~~~~~~-----~~~~~~~~~~~~--lLii 220 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAID-----VKNAISNGS-----VKEEIDAVKNVP--VLIL 220 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHH-----HHCCCC---------CCTTHHHHTSS--EEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHH-----HHHHhccch-----HHHHHHHhcCCC--EEEE
Confidence 3599999999999999999999987 66778888888765432 11110 010 122445555554 9999
Q ss_pred cccccc--CHHHHHHHHH-hhhcCceecCCCcEEecccEEEEEecCCChHHHHHh
Q 002012 772 DEIEKA--HQDVFNILLQ-LLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILET 823 (982)
Q Consensus 772 DEidkl--~~~~~~~Ll~-~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~i~~~ 823 (982)
||++.. ++..++.|+. +++.. + ..+..+|+|||.....+...
T Consensus 221 Ddig~~~~~~~~~~~ll~~ll~~r-~---------~~~~~~IitSN~~~~~l~~~ 265 (308)
T 2qgz_A 221 DDIGAEQATSWVRDEVLQVILQYR-M---------LEELPTFFTSNYSFADLERK 265 (308)
T ss_dssp ETCCC------CTTTTHHHHHHHH-H---------HHTCCEEEEESSCHHHHHTT
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHH-H---------HCCCcEEEECCCCHHHHHHH
Confidence 999554 3333443433 55531 0 02356899999887766543
No 190
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=98.30 E-value=1.1e-06 Score=85.16 Aligned_cols=61 Identities=15% Similarity=0.117 Sum_probs=57.8
Q ss_pred cccHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhcCCCcHHHHHHHHcCCChHHHHHHHH
Q 002012 96 EFTEKAWEGIVGAVDAARVNNQQVVETEHLMKALLEQKDGLARRILTKAGQDNTKVLQATE 156 (982)
Q Consensus 96 ~ft~~a~~~l~~A~~~A~~~~~~~v~~eHlLlaLl~~~~~~~~~iL~~~gv~~~~l~~~~~ 156 (982)
.||+.++++|+.|..+|+.+|+.+|++||||+||+.++++.+.++|+.+||+.+.+++.+.
T Consensus 79 ~~s~~~~~~l~~A~~~A~~~~~~~i~~ehLLlall~~~~~~~~~iL~~~gi~~~~l~~~i~ 139 (143)
T 1k6k_A 79 QPTLSFQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFIS 139 (143)
T ss_dssp EECHHHHHHHHHHHHHHHSSSCSCBCHHHHHHHHTTCTTSHHHHHHHHTTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhCcCcHHHHHHHHcCCCHHHHHHHHH
Confidence 5899999999999999999999999999999999999888889999999999999998764
No 191
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.28 E-value=1.2e-06 Score=88.94 Aligned_cols=120 Identities=17% Similarity=0.153 Sum_probs=70.7
Q ss_pred HHHHHHHhccCC-CCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccccccccccHHHHHHHHHHH
Q 002012 278 IRRCIQILSRRT-KNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGTCYRGDFEKRLKAVLKE 356 (982)
Q Consensus 278 i~~l~~~L~~~~-~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~~~~g~~e~~l~~l~~~ 356 (982)
+..+...+...+ ++++||+||||||||++|.++++.+ ..+++.+.-+ ... +. +..
T Consensus 45 ~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l----------~g~i~~fans----~s~----f~------l~~ 100 (212)
T 1tue_A 45 LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFI----------QGAVISFVNS----TSH----FW------LEP 100 (212)
T ss_dssp HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHH----------TCEECCCCCS----SSC----GG------GGG
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHh----------CCCeeeEEec----cch----hh------hcc
Confidence 444444444433 3469999999999999999999988 2233222100 000 00 011
Q ss_pred HHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCC---------------CeEEEEecCchhHhhhhhcChHHH
Q 002012 357 VTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRG---------------ELRCIGATTLNEYRNYIEKDPALE 421 (982)
Q Consensus 357 ~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g---------------~i~vI~at~~~~~~~~~~~d~al~ 421 (982)
+ .+..|++|||++.-. ...+...++.+++.. ...+|.|||.+-.. ...-+.|.
T Consensus 101 l---~~~kIiiLDEad~~~-------~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~--~~~~~~L~ 168 (212)
T 1tue_A 101 L---TDTKVAMLDDATTTC-------WTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAK--DNRWPYLE 168 (212)
T ss_dssp G---TTCSSEEEEEECHHH-------HHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTS--SSSCHHHH
T ss_pred c---CCCCEEEEECCCchh-------HHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCccc--ccchhhhh
Confidence 1 112389999998532 122334566666532 34788899875421 12346799
Q ss_pred hccceEEecCCC
Q 002012 422 RRFQQVFCDQPS 433 (982)
Q Consensus 422 rRf~~i~i~~Ps 433 (982)
+|+..+.++.|-
T Consensus 169 SRi~~f~F~~~~ 180 (212)
T 1tue_A 169 SRITVFEFPNAF 180 (212)
T ss_dssp TSCEEEECCSCC
T ss_pred hhEEEEEcCCCC
Confidence 999988888764
No 192
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=98.23 E-value=3.7e-06 Score=83.64 Aligned_cols=109 Identities=16% Similarity=0.072 Sum_probs=74.7
Q ss_pred ccChhhHHHHHHHHHHHHHcCCCccCHHHHHHHHhc-CCcccccccccccCCHHHHHHHHHhhhcccccccCCCCchhHH
Q 002012 173 IVGSNFGLLLSNAQRIKKEMEDDFVSVEHLLLAFLS-DDRFGRLLFNDIRLNEKDLKDAVKAVRGHQRVTDQNPEGKYQA 251 (982)
Q Consensus 173 ~~s~~~~~vl~~A~~~a~~~g~~~I~~ehLllall~-~~~~a~~lL~~~gi~~~~l~~~i~~~~~~~~~~~~~~~~~~~~ 251 (982)
.||+.++++|+.|..+|.++|+.+|++||||+||++ +++.+.++|+.+|++.+.+++.+. ..+.............+.
T Consensus 24 kfT~~a~~aL~~A~~~A~~~~h~~I~~EHLLlaLL~~~~~~a~~iL~~~gvd~~~l~~~l~-~l~~~p~~~~~~~~~S~~ 102 (171)
T 3zri_A 24 KLNAQSKLALEQAASLCIERQHPEVTLEHYLDVLLDNPLSDVRLVLKQAGLEVDQVKQAIA-STYSREQVLDTYPAFSPL 102 (171)
T ss_dssp HBCHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHTTCTTSHHHHHHHHTTCCHHHHHHHHH-HHSCCCCCCSSCCEECHH
T ss_pred HcCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHH-HHhcCCCCCCCCCCcCHH
Confidence 479999999999999999999999999999999994 567889999999999999999988 654221111111111222
Q ss_pred HHHhhhhhHHHhhc-CCCCCcccchHHHHHHHH
Q 002012 252 LEKYGNDLTELARS-GKLDPVIGRDDEIRRCIQ 283 (982)
Q Consensus 252 l~~~~~~l~~~~~~-~~l~~liG~~~~i~~l~~ 283 (982)
+.+.... ...... ..-++.|+.++.+-.++.
T Consensus 103 l~~vL~~-A~~~A~l~~gd~~I~teHLLLALl~ 134 (171)
T 3zri_A 103 LVELLQE-AWLLSSTELEQAELRSGAIFLAALT 134 (171)
T ss_dssp HHHHHHH-HHHHHHTTTCCSSBCHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHcCCCEEcHHHHHHHHHh
Confidence 2222111 111122 344667888776655543
No 193
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.19 E-value=3.1e-06 Score=86.67 Aligned_cols=131 Identities=15% Similarity=0.099 Sum_probs=72.8
Q ss_pred CcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCC-CeEEEEeccccccccc-----------cccc--HHHHHHHHHHHH
Q 002012 292 NPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQN-RKLISLDMASLVAGTC-----------YRGD--FEKRLKAVLKEV 357 (982)
Q Consensus 292 ~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~-~~v~~l~~~~l~~~~~-----------~~g~--~e~~l~~l~~~~ 357 (982)
-.+++|+||+|||++|..++.....-. + .-.+ .+++..++..+..+.. ..++ ....+...+. .
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~~~~~-~-~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~-~ 83 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMANDEMFK-P-DENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIK-K 83 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCGGGS-C-CTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTT-S
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhhc-c-cccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhh-c
Confidence 467889999999999988755431000 0 0124 6666666555432110 0000 0011111111 0
Q ss_pred HhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhc--CCCeEEEEecCchhHhhhhhcChHHHhccc-eEEecCCC
Q 002012 358 TKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLG--RGELRCIGATTLNEYRNYIEKDPALERRFQ-QVFCDQPS 433 (982)
Q Consensus 358 ~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le--~g~i~vI~at~~~~~~~~~~~d~al~rRf~-~i~i~~Ps 433 (982)
. .+.++||+|||++.+.+.+... .+...+|..+.. ...+.+|.+|.+.. .++.++++|+. .+++..|.
T Consensus 84 ~-~~~~~vliIDEAq~l~~~~~~~--~e~~rll~~l~~~r~~~~~iil~tq~~~-----~l~~~lr~ri~~~~~l~~~~ 154 (199)
T 2r2a_A 84 P-ENIGSIVIVDEAQDVWPARSAG--SKIPENVQWLNTHRHQGIDIFVLTQGPK-----LLDQNLRTLVRKHYHIASNK 154 (199)
T ss_dssp G-GGTTCEEEETTGGGTSBCCCTT--CCCCHHHHGGGGTTTTTCEEEEEESCGG-----GBCHHHHTTEEEEEEEEECS
T ss_pred c-ccCceEEEEEChhhhccCcccc--chhHHHHHHHHhcCcCCeEEEEECCCHH-----HHhHHHHHHhheEEEEcCcc
Confidence 1 2446799999999996543211 111223333322 34567788888866 78999999996 66666653
No 194
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=98.17 E-value=3.1e-06 Score=82.33 Aligned_cols=62 Identities=19% Similarity=0.224 Sum_probs=56.6
Q ss_pred cccHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhcCCCcHHHHHHHHcCCChHHHHHHHHHh
Q 002012 96 EFTEKAWEGIVGAVDAARVNNQQVVETEHLMKALLEQKDGLARRILTKAGQDNTKVLQATEDF 158 (982)
Q Consensus 96 ~ft~~a~~~l~~A~~~A~~~~~~~v~~eHlLlaLl~~~~~~~~~iL~~~gv~~~~l~~~~~~~ 158 (982)
.||+.+.++|..|..+|+.+|+.+|++||||+||+ ++++.+.++|..+||+.+.+++.+...
T Consensus 82 ~~s~~~~~vl~~A~~~a~~~~~~~i~~ehlLlall-~~~~~~~~~L~~~gi~~~~l~~~l~~~ 143 (148)
T 1khy_A 82 QPSQDLVRVLNLCDKLAQKRGDNFISSELFVLAAL-ESRGTLADILKAAGATTANITQAIEQM 143 (148)
T ss_dssp CBCHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHH-TSCHHHHHHHHHTTCCHHHHHHHHHC-
T ss_pred CcCHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHH-cCCcHHHHHHHHcCCCHHHHHHHHHHH
Confidence 49999999999999999999999999999999999 557788999999999999999887543
No 195
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.15 E-value=9.6e-06 Score=90.27 Aligned_cols=183 Identities=13% Similarity=0.196 Sum_probs=106.8
Q ss_pred cccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccc------ccc
Q 002012 663 KRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYM------EKH 736 (982)
Q Consensus 663 ~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~------~~~ 736 (982)
..++|.+..++.|...+.. + ..++++||+|+|||++++.+++.. + .+.+++.... ...
T Consensus 12 ~~~~gR~~el~~L~~~l~~---~--------~~v~i~G~~G~GKT~Ll~~~~~~~---~--~~~~~~~~~~~~~~~~~~~ 75 (350)
T 2qen_A 12 EDIFDREEESRKLEESLEN---Y--------PLTLLLGIRRVGKSSLLRAFLNER---P--GILIDCRELYAERGHITRE 75 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHH---C--------SEEEEECCTTSSHHHHHHHHHHHS---S--EEEEEHHHHHHTTTCBCHH
T ss_pred HhcCChHHHHHHHHHHHhc---C--------CeEEEECCCcCCHHHHHHHHHHHc---C--cEEEEeecccccccCCCHH
Confidence 4688999999998887763 1 259999999999999999999875 2 6777876542 100
Q ss_pred c----cccccCC-----------------CCCccccccCCchhHHHhh----CCCeEEEEccccccC-------HHHHHH
Q 002012 737 S----VSRLVGA-----------------PPGYVGYEEGGQLTEVVRR----RPYSVVLFDEIEKAH-------QDVFNI 784 (982)
Q Consensus 737 ~----~~~l~g~-----------------~~g~vg~~~~~~l~~~l~~----~~~~Vl~lDEidkl~-------~~~~~~ 784 (982)
. +...++. .... .......+.+.+.. ....||+|||++.+. +++...
T Consensus 76 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~ 154 (350)
T 2qen_A 76 ELIKELQSTISPFQKFQSKFKISLNLKFLTLEP-RKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLAL 154 (350)
T ss_dssp HHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCG-GGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHhHhhhceeEEEecceeecc-ccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHH
Confidence 0 0111111 0000 00011123333321 236799999999975 466777
Q ss_pred HHHhhhcCceecCCCcEEecccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHH-hhcChHHHhccccccc
Q 002012 785 LLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELAR-QTFRPEFLNRIDEYIV 863 (982)
Q Consensus 785 Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~f~p~ll~Rid~ii~ 863 (982)
|..+++.. .++.+|+|+.... ....+ +. ......+.+|....+.
T Consensus 155 L~~~~~~~------------~~~~~il~g~~~~--~l~~~---------------------l~~~~~~~~l~~~~~~~i~ 199 (350)
T 2qen_A 155 FAYAYDSL------------PNLKIILTGSEVG--LLHDF---------------------LKITDYESPLYGRIAGEVL 199 (350)
T ss_dssp HHHHHHHC------------TTEEEEEEESSHH--HHHHH---------------------HCTTCTTSTTTTCCCEEEE
T ss_pred HHHHHHhc------------CCeEEEEECCcHH--HHHHH---------------------HhhcCCCCccccCccceee
Confidence 76666641 2577788765321 01100 00 0012235566656789
Q ss_pred cCCCChhHHHHHHHHHHHHHHHHHHhCCCCccCCHHHHHHHHh
Q 002012 864 FQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGI 906 (982)
Q Consensus 864 F~pl~~~~l~~il~~~l~~~~~~~~~~~~~l~i~~~a~~~L~~ 906 (982)
+.||+.++..+++...+.. .+ ..+++++.+.+..
T Consensus 200 l~pl~~~e~~~~l~~~~~~-------~~--~~~~~~~~~~i~~ 233 (350)
T 2qen_A 200 VKPFDKDTSVEFLKRGFRE-------VN--LDVPENEIEEAVE 233 (350)
T ss_dssp CCCCCHHHHHHHHHHHHHT-------TT--CCCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH-------cC--CCCCHHHHHHHHH
Confidence 9999999999888764432 22 3355655555443
No 196
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.12 E-value=1.5e-05 Score=80.10 Aligned_cols=68 Identities=6% Similarity=0.086 Sum_probs=40.5
Q ss_pred CCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCCCeEEEEecC--chhHhhhhhcChHHHhc--cceEEecCCCHHH
Q 002012 361 NGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRGELRCIGATT--LNEYRNYIEKDPALERR--FQQVFCDQPSVEN 436 (982)
Q Consensus 361 ~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g~i~vI~at~--~~~~~~~~~~d~al~rR--f~~i~i~~Ps~~e 436 (982)
..+-+|++||++....- +....+.+..+++.....+|.++. .+. ..-..+.+| +..+.+...+.++
T Consensus 98 ~~p~llilDEigp~~~l-----d~~~~~~l~~~l~~~~~~~i~~~H~~h~~-----~~~~~i~~r~~~~i~~~~~~~r~~ 167 (178)
T 1ye8_A 98 DRRKVIIIDEIGKMELF-----SKKFRDLVRQIMHDPNVNVVATIPIRDVH-----PLVKEIRRLPGAVLIELTPENRDV 167 (178)
T ss_dssp CTTCEEEECCCSTTGGG-----CHHHHHHHHHHHTCTTSEEEEECCSSCCS-----HHHHHHHTCTTCEEEECCTTTTTT
T ss_pred cCCCEEEEeCCCCcccC-----CHHHHHHHHHHHhcCCCeEEEEEccCCCc-----hHHHHHHhcCCcEEEEecCcCHHH
Confidence 45569999998644311 144556777777766665666663 221 123456666 5567777766544
Q ss_pred HH
Q 002012 437 TI 438 (982)
Q Consensus 437 ~~ 438 (982)
..
T Consensus 168 ~~ 169 (178)
T 1ye8_A 168 IL 169 (178)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 197
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.09 E-value=9.7e-06 Score=86.04 Aligned_cols=132 Identities=14% Similarity=0.242 Sum_probs=75.0
Q ss_pred eEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccccccccCCCCCccccccCCchhHHHhhCCC-eEEEEcc
Q 002012 695 SFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRLVGAPPGYVGYEEGGQLTEVVRRRPY-SVVLFDE 773 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~~~~-~Vl~lDE 773 (982)
.++|+||||||||++|.+||..+. . ...++.+. .+ + .+..... .|++.||
T Consensus 106 ~~~l~GppgtGKt~~a~ala~~~~---l-~G~vn~~~---~~-----------f-----------~l~~~~~k~i~l~Ee 156 (267)
T 1u0j_A 106 TIWLFGPATTGKTNIAEAIAHTVP---F-YGCVNWTN---EN-----------F-----------PFNDCVDKMVIWWEE 156 (267)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS---C-EEECCTTC---SS-----------C-----------TTGGGSSCSEEEECS
T ss_pred EEEEECCCCCCHHHHHHHHHhhhc---c-cceeeccc---cc-----------c-----------ccccccccEEEEecc
Confidence 599999999999999999999741 0 11112111 00 0 0111112 2566666
Q ss_pred ccccCHHHHHHHHHhhhcCceec-CC-CcEEecccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhcC
Q 002012 774 IEKAHQDVFNILLQLLDDGRITD-SQ-GRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFR 851 (982)
Q Consensus 774 idkl~~~~~~~Ll~~le~g~~~d-~~-g~~~~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 851 (982)
... ..+.++.+..+++-+.+.. .. .......++-+|+|||........ ++... ....
T Consensus 157 ~~~-~~d~~~~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~~i~~~~~-----g~~~s---------------~~~~ 215 (267)
T 1u0j_A 157 GKM-TAKVVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVID-----GNSTT---------------FEHQ 215 (267)
T ss_dssp CCE-ETTTHHHHHHHHTTCCEEC------CCEECCCCEEEEESSCTTCEEE-----TTEEE---------------CTTH
T ss_pred ccc-hhHHHHHHHHHhCCCcEEEecCcCCcccccCCCEEEEecCCcccccc-----cCccc---------------hhhh
Confidence 554 4566777888887544432 21 112244677889999975431100 00000 0023
Q ss_pred hHHHhccccccccC--------CCChhHHHHHHH
Q 002012 852 PEFLNRIDEYIVFQ--------PLDSKEISKIVE 877 (982)
Q Consensus 852 p~ll~Rid~ii~F~--------pl~~~~l~~il~ 877 (982)
+.|.+|+ .++.|. |++.++....+.
T Consensus 216 ~~L~sR~-~~f~F~~~~p~~~~~lt~~~~~~f~~ 248 (267)
T 1u0j_A 216 QPLQDRM-FKFELTRRLDHDFGKVTKQEVKDFFR 248 (267)
T ss_dssp HHHHTTE-EEEECCSCCCTTSCCCCHHHHHHHHH
T ss_pred HHHhhhE-EEEECCCcCCcccCCCCHHHHHHHHH
Confidence 4577888 577777 899999888887
No 198
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.06 E-value=4.1e-06 Score=91.07 Aligned_cols=106 Identities=21% Similarity=0.386 Sum_probs=61.6
Q ss_pred CCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccccccccccHHHHHHHHHHHHHhcCCCeEEEEcc
Q 002012 291 NNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFIDE 370 (982)
Q Consensus 291 ~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDE 370 (982)
..++|+||||+|||++|..++.. ..+ .+.++.+...+.... +..+.+..+..+.+.+...+ +||||+
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~-~G~-------~VlyIs~~~eE~v~~--~~~~le~~l~~i~~~l~~~~---LLVIDs 190 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA-LGG-------KDKYATVRFGEPLSG--YNTDFNVFVDDIARAMLQHR---VIVIDS 190 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH-HHT-------TSCCEEEEBSCSSTT--CBCCHHHHHHHHHHHHHHCS---EEEEEC
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh-CCC-------CEEEEEecchhhhhh--hhcCHHHHHHHHHHHHhhCC---EEEEec
Confidence 35689999999999999999986 211 223444421222211 22456666666777666533 999999
Q ss_pred chhhhhCCCC---Cc--hh---hHHHHHHhhhcCCCeEEEEecCchh
Q 002012 371 LHTIIGAGNQ---SG--AM---DASNMLKPMLGRGELRCIGATTLNE 409 (982)
Q Consensus 371 i~~l~~~~~~---~~--~~---~~~~~L~~~le~g~i~vI~at~~~~ 409 (982)
++.+...... .+ .. .....|..++.+.++.+|+++++..
T Consensus 191 I~aL~~~~~~~s~~G~v~~~lrqlL~~L~~~~k~~gvtVIlttnp~s 237 (331)
T 2vhj_A 191 LKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLNPTS 237 (331)
T ss_dssp CTTTC-----------CCHHHHHHHHHHHHHHHHHTCEEEEECCCSS
T ss_pred ccccccccccccccchHHHHHHHHHHHHHHHHhhCCCEEEEEeCCcc
Confidence 9998543221 11 12 2223333444455777888888543
No 199
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.05 E-value=5e-06 Score=84.28 Aligned_cols=97 Identities=20% Similarity=0.343 Sum_probs=53.7
Q ss_pred eEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccccccccCCCCCccccccCCchhHHHhhCCCeEEEEccc
Q 002012 695 SFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEI 774 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~~~~~Vl~lDEi 774 (982)
+++|+||||||||++|.+|++.+.+ ..+.+..+. ..+ ....+.. ..|++|||+
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~l~g---~i~~fans~--------------s~f--------~l~~l~~--~kIiiLDEa 112 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHFIQG---AVISFVNST--------------SHF--------WLEPLTD--TKVAMLDDA 112 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHHTC---EECCCCCSS--------------SCG--------GGGGGTT--CSSEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC---CeeeEEecc--------------chh--------hhcccCC--CCEEEEECC
Confidence 4999999999999999999999832 221111000 000 0011111 249999999
Q ss_pred cccCHHH-HHHHHHhhhcCcee-cCC-CcEEecccEEEEEecCCChH
Q 002012 775 EKAHQDV-FNILLQLLDDGRIT-DSQ-GRTVSFTNCVVIMTSNIGSH 818 (982)
Q Consensus 775 dkl~~~~-~~~Ll~~le~g~~~-d~~-g~~~~~~~~iiI~tsn~~~~ 818 (982)
+...-.. ...+..+|+...+. |.. ...+.....-+|+|||....
T Consensus 113 d~~~~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~ 159 (212)
T 1tue_A 113 TTTCWTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPA 159 (212)
T ss_dssp CHHHHHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTT
T ss_pred CchhHHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcc
Confidence 8653332 34566677643221 111 11122233478999997643
No 200
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.04 E-value=1.4e-05 Score=84.84 Aligned_cols=124 Identities=16% Similarity=0.273 Sum_probs=71.7
Q ss_pred HHHHhccC-C-CCCcEEeCCCCCcHHHHHHHHHHHhh-cCCCCCCCCCCeEEEEecccccccccccccHHHHHHHHHHHH
Q 002012 281 CIQILSRR-T-KNNPVIIGEPGVGKTAIAEGLAQRIV-RGDVPETLQNRKLISLDMASLVAGTCYRGDFEKRLKAVLKEV 357 (982)
Q Consensus 281 l~~~L~~~-~-~~~iLL~GppGvGKT~la~~la~~l~-~~~~p~~l~~~~v~~l~~~~l~~~~~~~g~~e~~l~~l~~~~ 357 (982)
+...+... + +++++|+||||||||++|.+||..+. .|. ++.+. ..+ .+..+
T Consensus 93 l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~~l~G~------------vn~~~----~~f----------~l~~~ 146 (267)
T 1u0j_A 93 FLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTVPFYGC------------VNWTN----ENF----------PFNDC 146 (267)
T ss_dssp HHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHSSCEEE------------CCTTC----SSC----------TTGGG
T ss_pred HHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhhcccce------------eeccc----ccc----------ccccc
Confidence 44444444 3 45699999999999999999998751 111 11110 000 01111
Q ss_pred HhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhc--------C-------CCeEEEEecCchhHhh------hhhc
Q 002012 358 TKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLG--------R-------GELRCIGATTLNEYRN------YIEK 416 (982)
Q Consensus 358 ~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le--------~-------g~i~vI~at~~~~~~~------~~~~ 416 (982)
....|++.||.... .++.+.++.+++ . ....+|.+||.+...- ....
T Consensus 147 ---~~k~i~l~Ee~~~~---------~d~~~~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~~i~~~~~g~~~s~~~ 214 (267)
T 1u0j_A 147 ---VDKMVIWWEEGKMT---------AKVVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNSTTFEH 214 (267)
T ss_dssp ---SSCSEEEECSCCEE---------TTTHHHHHHHHTTCCEEC------CCEECCCCEEEEESSCTTCEEETTEEECTT
T ss_pred ---cccEEEEeccccch---------hHHHHHHHHHhCCCcEEEecCcCCcccccCCCEEEEecCCcccccccCccchhh
Confidence 22346777777654 233345666665 1 2457888888844220 0134
Q ss_pred ChHHHhccceEEecC--------CCHHHHHHHHH
Q 002012 417 DPALERRFQQVFCDQ--------PSVENTISILR 442 (982)
Q Consensus 417 d~al~rRf~~i~i~~--------Ps~~e~~~IL~ 442 (982)
.++|.+|+..+.|.. .+.++....++
T Consensus 215 ~~~L~sR~~~f~F~~~~p~~~~~lt~~~~~~f~~ 248 (267)
T 1u0j_A 215 QQPLQDRMFKFELTRRLDHDFGKVTKQEVKDFFR 248 (267)
T ss_dssp HHHHHTTEEEEECCSCCCTTSCCCCHHHHHHHHH
T ss_pred hHHHhhhEEEEECCCcCCcccCCCCHHHHHHHHH
Confidence 678999998888883 34555555554
No 201
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.00 E-value=1e-05 Score=90.33 Aligned_cols=168 Identities=13% Similarity=0.175 Sum_probs=98.4
Q ss_pred cccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccc-----cccc
Q 002012 663 KRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYM-----EKHS 737 (982)
Q Consensus 663 ~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~-----~~~~ 737 (982)
..++|.+..++.|.. +.. ..++++||+|+|||++++.+++.+ ...++.+++..+. ....
T Consensus 13 ~~~~gR~~el~~L~~-l~~------------~~v~i~G~~G~GKT~L~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 76 (357)
T 2fna_A 13 KDFFDREKEIEKLKG-LRA------------PITLVLGLRRTGKSSIIKIGINEL---NLPYIYLDLRKFEERNYISYKD 76 (357)
T ss_dssp GGSCCCHHHHHHHHH-TCS------------SEEEEEESTTSSHHHHHHHHHHHH---TCCEEEEEGGGGTTCSCCCHHH
T ss_pred HHhcChHHHHHHHHH-hcC------------CcEEEECCCCCCHHHHHHHHHHhc---CCCEEEEEchhhccccCCCHHH
Confidence 568898888777766 431 259999999999999999999887 3456778876541 1000
Q ss_pred ----ccc--------------ccCC----CCCccc---------cccCCchhHHHhhC--CCeEEEEccccccCH----H
Q 002012 738 ----VSR--------------LVGA----PPGYVG---------YEEGGQLTEVVRRR--PYSVVLFDEIEKAHQ----D 780 (982)
Q Consensus 738 ----~~~--------------l~g~----~~g~vg---------~~~~~~l~~~l~~~--~~~Vl~lDEidkl~~----~ 780 (982)
+.. +++. +....+ ...-..+.+.+... ...||+|||++.+.. +
T Consensus 77 ~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~ 156 (357)
T 2fna_A 77 FLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVN 156 (357)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCC
T ss_pred HHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchh
Confidence 000 0010 000000 00111244445443 367999999999853 4
Q ss_pred HHHHHHHhhhcCceecCCCcEEecccEEEEEecCCChHHHHHhhhhcccchHHHHHHHHHHHHHHHH-hhcChHHHhccc
Q 002012 781 VFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELAR-QTFRPEFLNRID 859 (982)
Q Consensus 781 ~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~f~p~ll~Rid 859 (982)
+...|..+++.. .++.+|+|++... ....+ +. ......+.+|..
T Consensus 157 ~~~~l~~~~~~~------------~~~~~i~~g~~~~--~l~~~---------------------l~~~~~~~~l~~r~~ 201 (357)
T 2fna_A 157 LLPALAYAYDNL------------KRIKFIMSGSEMG--LLYDY---------------------LRVEDPESPLFGRAF 201 (357)
T ss_dssp CHHHHHHHHHHC------------TTEEEEEEESSHH--HHHHH---------------------TTTTCTTSTTTTCCC
T ss_pred HHHHHHHHHHcC------------CCeEEEEEcCchH--HHHHH---------------------HhccCCCCccccCcc
Confidence 555665555531 2467788776421 11100 00 001223556765
Q ss_pred cccccCCCChhHHHHHHHHHHH
Q 002012 860 EYIVFQPLDSKEISKIVEIQMN 881 (982)
Q Consensus 860 ~ii~F~pl~~~~l~~il~~~l~ 881 (982)
..+.+.||+.++..+++...+.
T Consensus 202 ~~i~l~~l~~~e~~~~l~~~~~ 223 (357)
T 2fna_A 202 STVELKPFSREEAIEFLRRGFQ 223 (357)
T ss_dssp EEEEECCCCHHHHHHHHHHHHH
T ss_pred ceeecCCCCHHHHHHHHHHHHH
Confidence 6789999999999998877554
No 202
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.92 E-value=8.8e-05 Score=89.16 Aligned_cols=175 Identities=13% Similarity=0.054 Sum_probs=94.2
Q ss_pred cCCCCCcccchHHHHHHHHHhcc--CCCCCcEEeCCCCCcHHHHHHHHHHHhh--cCCCCCCCCCCeEEEEecccccc--
Q 002012 265 SGKLDPVIGRDDEIRRCIQILSR--RTKNNPVIIGEPGVGKTAIAEGLAQRIV--RGDVPETLQNRKLISLDMASLVA-- 338 (982)
Q Consensus 265 ~~~l~~liG~~~~i~~l~~~L~~--~~~~~iLL~GppGvGKT~la~~la~~l~--~~~~p~~l~~~~v~~l~~~~l~~-- 338 (982)
|.....+|||+.++..+.+.|.. ...+-++|+|++|+|||++|..+++... .... ...+++++++....
T Consensus 120 P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f-----~~~v~wv~~~~~~~~~ 194 (591)
T 1z6t_A 120 PQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCF-----PGGVHWVSVGKQDKSG 194 (591)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHC-----TTCEEEEEEESCCHHH
T ss_pred CCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhC-----CCceEEEECCCCchHH
Confidence 45566799999999999999874 2334577889999999999999875321 1111 12345554332100
Q ss_pred ----------c--------ccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCCCeE
Q 002012 339 ----------G--------TCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRGELR 400 (982)
Q Consensus 339 ----------~--------~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g~i~ 400 (982)
. .......+.....+...+....++++|+||+++... .+.. + .....
T Consensus 195 ~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~-------------~l~~-l-~~~~~ 259 (591)
T 1z6t_A 195 LLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSW-------------VLKA-F-DSQCQ 259 (591)
T ss_dssp HHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHH-------------HHHT-T-CSSCE
T ss_pred HHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHH-------------HHHH-h-cCCCe
Confidence 0 000112222222333333333367899999998531 2222 2 34567
Q ss_pred EEEecCchhHhhhhhcChHHHhccceEEe-cCCCHHHHHHHHHHHHHHHhhhcCCccChHHHHHHHHHhhh
Q 002012 401 CIGATTLNEYRNYIEKDPALERRFQQVFC-DQPSVENTISILRGLRERYELHHGVKISDSALVSAAVLADR 470 (982)
Q Consensus 401 vI~at~~~~~~~~~~~d~al~rRf~~i~i-~~Ps~~e~~~IL~~~~~~~~~~~~v~i~~~~l~~~~~~s~r 470 (982)
+|.||....... .+......+.. ...+.++..+++...... ...-.++....+++.+++
T Consensus 260 ilvTsR~~~~~~------~~~~~~~~v~~l~~L~~~ea~~L~~~~~~~-----~~~~~~~~~~~i~~~~~G 319 (591)
T 1z6t_A 260 ILLTTRDKSVTD------SVMGPKYVVPVESSLGKEKGLEILSLFVNM-----KKADLPEQAHSIIKECKG 319 (591)
T ss_dssp EEEEESCGGGGT------TCCSCEEEEECCSSCCHHHHHHHHHHHHTS-----CGGGSCTHHHHHHHHHTT
T ss_pred EEEECCCcHHHH------hcCCCceEeecCCCCCHHHHHHHHHHHhCC-----CcccccHHHHHHHHHhCC
Confidence 777776554111 01111112222 356888888888754421 111123445556666553
No 203
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.87 E-value=2.5e-05 Score=90.91 Aligned_cols=62 Identities=13% Similarity=0.295 Sum_probs=42.4
Q ss_pred hhhhhHHHhhcCCCCCcc-cchHHHHHHHHHhccCCCCCcEEeCCCCCcHHHHHHHHHHHhhcC
Q 002012 255 YGNDLTELARSGKLDPVI-GRDDEIRRCIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRG 317 (982)
Q Consensus 255 ~~~~l~~~~~~~~l~~li-G~~~~i~~l~~~L~~~~~~~iLL~GppGvGKT~la~~la~~l~~~ 317 (982)
...+|.++++|-.++.+- +|...+..++..+.... .+++|.|+||||||+++..++..+...
T Consensus 10 ~~~~~~~~~~p~~~~~Ln~~Q~~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l~~~ 72 (459)
T 3upu_A 10 HSSGLVPRGSHMTFDDLTEGQKNAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEALIST 72 (459)
T ss_dssp -----------CCSSCCCHHHHHHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred ccCCCccccCCCccccCCHHHHHHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence 346789999999999887 67778888877766543 388999999999999999999988654
No 204
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.77 E-value=3.1e-05 Score=78.24 Aligned_cols=94 Identities=16% Similarity=0.196 Sum_probs=51.4
Q ss_pred EEeecCCCCchHHHHHHHHHHhcCCCCceEEEecc---ccccccccccccCCCCCccccccCCchhHHHhhCCCeEEEEc
Q 002012 696 FMFMGPTGVGKTELGKALADFLFNTENALVRIDMS---EYMEKHSVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFD 772 (982)
Q Consensus 696 lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s---~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~~~~~Vl~lD 772 (982)
.+++||+|+|||+++..++..+...+...+.+... .+.. ..+....|.............+.+.+. .+..+|+||
T Consensus 6 ~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d~r~~~-~~i~s~~g~~~~~~~~~~~~~~~~~~~-~~~dvviID 83 (184)
T 2orw_A 6 TVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSRYHS-TMIVSHSGNGVEAHVIERPEEMRKYIE-EDTRGVFID 83 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-----CC-CEECC----CEECEEESSGGGGGGGCC-TTEEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeeccccccCc-ccEEecCCCceeeEEECCHHHHHHHhc-CCCCEEEEE
Confidence 78999999999999966666554434444433211 0110 011111121111111111112222222 246799999
Q ss_pred cccccCHHHHHHHHHhhhc
Q 002012 773 EIEKAHQDVFNILLQLLDD 791 (982)
Q Consensus 773 Eidkl~~~~~~~Ll~~le~ 791 (982)
|++.+++++++.|..+.++
T Consensus 84 E~Q~~~~~~~~~l~~l~~~ 102 (184)
T 2orw_A 84 EVQFFNPSLFEVVKDLLDR 102 (184)
T ss_dssp CGGGSCTTHHHHHHHHHHT
T ss_pred CcccCCHHHHHHHHHHHHC
Confidence 9999988888888888875
No 205
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.58 E-value=2.8e-05 Score=78.60 Aligned_cols=118 Identities=22% Similarity=0.206 Sum_probs=60.0
Q ss_pred CcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecc--c------ccc--cccccccHHHHHHHHHHHHHhcC
Q 002012 292 NPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMA--S------LVA--GTCYRGDFEKRLKAVLKEVTKSN 361 (982)
Q Consensus 292 ~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~--~------l~~--~~~~~g~~e~~l~~l~~~~~~~~ 361 (982)
-.+++||+|+||||++..++..+... +.+++.+... . +.+ +.............+++.+. +
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~-------g~~v~~~~~~~d~r~~~~~i~s~~g~~~~~~~~~~~~~~~~~~~--~ 75 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLG-------KKKVAVFKPKIDSRYHSTMIVSHSGNGVEAHVIERPEEMRKYIE--E 75 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT-------TCEEEEEEEC-----CCCEECC----CEECEEESSGGGGGGGCC--T
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-------CCeEEEEeeccccccCcccEEecCCCceeeEEECCHHHHHHHhc--C
Confidence 35788999999999997777766432 3333332211 0 000 00000000001112222221 2
Q ss_pred CCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCCCeEEEEecCchhHh-hhhhcChHHHhccceE
Q 002012 362 GQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRGELRCIGATTLNEYR-NYIEKDPALERRFQQV 427 (982)
Q Consensus 362 ~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g~i~vI~at~~~~~~-~~~~~d~al~rRf~~i 427 (982)
..-+|+|||++.+. .+..+.|..+.+.+ +.+|.++...+|+ +.+...+.|..+.+.|
T Consensus 76 ~~dvviIDE~Q~~~--------~~~~~~l~~l~~~~-~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v 133 (184)
T 2orw_A 76 DTRGVFIDEVQFFN--------PSLFEVVKDLLDRG-IDVFCAGLDLTHKQNPFETTALLLSLADTV 133 (184)
T ss_dssp TEEEEEECCGGGSC--------TTHHHHHHHHHHTT-CEEEEEEESBCTTSCBCHHHHHHHHHCSEE
T ss_pred CCCEEEEECcccCC--------HHHHHHHHHHHHCC-CCEEEEeeccccccCCccchHHHHHHhhhe
Confidence 34599999999874 34566777777664 4444433322221 2345567777776544
No 206
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.54 E-value=0.00014 Score=74.23 Aligned_cols=81 Identities=16% Similarity=0.123 Sum_probs=44.4
Q ss_pred eEEeecCCCCchHHHHHHHHHHhc-----CCC-CceEEEeccccccccccccccCCC---CCccccc-cCCchhHHH--h
Q 002012 695 SFMFMGPTGVGKTELGKALADFLF-----NTE-NALVRIDMSEYMEKHSVSRLVGAP---PGYVGYE-EGGQLTEVV--R 762 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~-----~~~-~~~v~i~~s~~~~~~~~~~l~g~~---~g~vg~~-~~~~l~~~l--~ 762 (982)
..||+|+||+|||++|..++.... ..+ .++...++.++...+... .... ....... ....+.+.+ .
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~--~~~k~~~~~~~~~~~~~~~~~~~~~~~ 84 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYI--ETDAKKLPKSTDEQLSAHDMYEWIKKP 84 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEE--ECCTTTCSSCCSSCEEGGGHHHHTTSG
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCcccccccc--chhhhhccccCcccccHHHHHHHhhcc
Confidence 388999999999999988765542 334 566566766553222100 0000 0000000 001223322 2
Q ss_pred hCCCeEEEEcccccc
Q 002012 763 RRPYSVVLFDEIEKA 777 (982)
Q Consensus 763 ~~~~~Vl~lDEidkl 777 (982)
...+.||+|||++.+
T Consensus 85 ~~~~~vliIDEAq~l 99 (199)
T 2r2a_A 85 ENIGSIVIVDEAQDV 99 (199)
T ss_dssp GGTTCEEEETTGGGT
T ss_pred ccCceEEEEEChhhh
Confidence 334679999999998
No 207
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.44 E-value=0.00033 Score=70.20 Aligned_cols=23 Identities=39% Similarity=0.613 Sum_probs=21.3
Q ss_pred eEEeecCCCCchHHHHHHHHHHh
Q 002012 695 SFMFMGPTGVGKTELGKALADFL 717 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l 717 (982)
.+.|+||+|+|||++++.|+..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999987
No 208
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.36 E-value=0.0042 Score=73.83 Aligned_cols=136 Identities=13% Similarity=0.086 Sum_probs=74.0
Q ss_pred hhhHHHHHHHH-HHHHHcCCCccCHHHHHHHHhcCCcccccccccccCCHHHHHHHHHhhhcccccccCC----------
Q 002012 176 SNFGLLLSNAQ-RIKKEMEDDFVSVEHLLLAFLSDDRFGRLLFNDIRLNEKDLKDAVKAVRGHQRVTDQN---------- 244 (982)
Q Consensus 176 ~~~~~vl~~A~-~~a~~~g~~~I~~ehLllall~~~~~a~~lL~~~gi~~~~l~~~i~~~~~~~~~~~~~---------- 244 (982)
..++..+..++ ..+...||.|+..+.|+-... .+ ++++.+.+.+++..+.....+....
T Consensus 72 ~R~~a~~~~~l~~~~~~~Ght~~~~~~l~~~~~-------~~---l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (574)
T 3e1s_A 72 RRLTAAAVYALQLAGTQAGHSFLPRSRAEKGVV-------HY---TRVTPGQARLAVETAVELGRLSEDDSPLFAAEAAA 141 (574)
T ss_dssp HHHHHHHHHHHHHHHHHTCCSCEEHHHHHHHHH-------HH---HCCCHHHHHHHHHHHHHHTSSEEECCCCSCC---C
T ss_pred HHHHHHHHHHHHHHHHHCCCEeecHHHHHHHHH-------HH---hCCCHHHHHHHHHHHHhCCCEEEEecccccccccc
Confidence 45677777888 777889999999999865332 12 2467777777776654433222111
Q ss_pred C-C-----chhHHHHHh-hhhhHHHhhc-C-------C---CCCc--ccchHHHHHHHHHhccCCCCCcEEeCCCCCcHH
Q 002012 245 P-E-----GKYQALEKY-GNDLTELARS-G-------K---LDPV--IGRDDEIRRCIQILSRRTKNNPVIIGEPGVGKT 304 (982)
Q Consensus 245 ~-~-----~~~~~l~~~-~~~l~~~~~~-~-------~---l~~l--iG~~~~i~~l~~~L~~~~~~~iLL~GppGvGKT 304 (982)
. . ..+...+.. ...+...... . . ++.+ .-.+.....+..++ ....++++|+||||||
T Consensus 142 ~~~~~~yl~~~~~~E~~ia~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~Q~~Av~~~~---~~~~~~I~G~pGTGKT 218 (574)
T 3e1s_A 142 TGEGRIYLPHVLRAEKKLASLIRTLLATPPADGAGNDDWAVPKKARKGLSEEQASVLDQLA---GHRLVVLTGGPGTGKS 218 (574)
T ss_dssp CSCCEEECHHHHHHHHHHHHHHHHHHHSCCCC-CCCCCCCCCTTTTTTCCHHHHHHHHHHT---TCSEEEEECCTTSCHH
T ss_pred CCCcEEEcHHHHHHHHHHHHHHHHHhccCCccCCChhhHHHHHhhcCCCCHHHHHHHHHHH---hCCEEEEEcCCCCCHH
Confidence 0 0 011111111 1112211111 0 0 1111 01223333333333 2457889999999999
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCeEEEE
Q 002012 305 AIAEGLAQRIVRGDVPETLQNRKLISL 331 (982)
Q Consensus 305 ~la~~la~~l~~~~~p~~l~~~~v~~l 331 (982)
+++..++..+... +.+++.+
T Consensus 219 t~i~~l~~~l~~~-------g~~Vl~~ 238 (574)
T 3e1s_A 219 TTTKAVADLAESL-------GLEVGLC 238 (574)
T ss_dssp HHHHHHHHHHHHT-------TCCEEEE
T ss_pred HHHHHHHHHHHhc-------CCeEEEe
Confidence 9999999887553 4556554
No 209
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.34 E-value=0.0018 Score=76.86 Aligned_cols=148 Identities=14% Similarity=0.130 Sum_probs=82.4
Q ss_pred ccchHHHHHHHHHhccC---CCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEeccccc-----------
Q 002012 272 IGRDDEIRRCIQILSRR---TKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLV----------- 337 (982)
Q Consensus 272 iG~~~~i~~l~~~L~~~---~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~----------- 337 (982)
+||+.++..+.+.|... ...-+.++|++|+||||||+.+++.. ...+.... + .+++++.+.-.
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~-~~~~~~~F-~-~~~wv~vs~~~~~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKS-DQLIGINY-D-SIVWLKDSGTAPKSTFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHC-SSTBTTTB-S-EEEEEECCCCSTTHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhh-hHHHhccC-C-cEEEEEECCCCCCCHHHHHHHH
Confidence 69999999999988654 23456789999999999999999621 00111111 2 34455544321
Q ss_pred ----ccc----c----ccccHHHHHHHHHHHHHhcCC-CeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCCCeEEEEe
Q 002012 338 ----AGT----C----YRGDFEKRLKAVLKEVTKSNG-QIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRGELRCIGA 404 (982)
Q Consensus 338 ----~~~----~----~~g~~e~~l~~l~~~~~~~~~-~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g~i~vI~a 404 (982)
... . ..++. ..+...+...-. ++ +++|+||+++... .+ .+. ......+|.|
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~-~~l~~~l~~~L~-~~kr~LlVLDdv~~~~---------~~--~~~---~~~gs~ilvT 271 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTS-VVLKRMICNALI-DRPNTLFVFDDVVQEE---------TI--RWA---QELRLRCLVT 271 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCH-HHHHHHHHHHHT-TSTTEEEEEEEECCHH---------HH--HHH---HHTTCEEEEE
T ss_pred HHHHhcCcccccccccccccH-HHHHHHHHHHHc-CCCcEEEEEECCCCch---------hh--ccc---ccCCCEEEEE
Confidence 000 0 00111 112222222222 43 7899999998742 11 111 1145677777
Q ss_pred cCchhHhhhhhcChHHHhccceEEecCCCHHHHHHHHHHH
Q 002012 405 TTLNEYRNYIEKDPALERRFQQVFCDQPSVENTISILRGL 444 (982)
Q Consensus 405 t~~~~~~~~~~~d~al~rRf~~i~i~~Ps~~e~~~IL~~~ 444 (982)
|........ +..--..+.+...+.++..+++...
T Consensus 272 TR~~~v~~~------~~~~~~~~~l~~L~~~ea~~Lf~~~ 305 (549)
T 2a5y_B 272 TRDVEISNA------ASQTCEFIEVTSLEIDECYDFLEAY 305 (549)
T ss_dssp ESBGGGGGG------CCSCEEEEECCCCCHHHHHHHHHHT
T ss_pred cCCHHHHHH------cCCCCeEEECCCCCHHHHHHHHHHH
Confidence 776542111 1001135788888999988888653
No 210
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.33 E-value=0.0034 Score=64.72 Aligned_cols=138 Identities=17% Similarity=0.205 Sum_probs=73.6
Q ss_pred CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecc--------ccccccc--------cccc--HHHH
Q 002012 288 RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMA--------SLVAGTC--------YRGD--FEKR 349 (982)
Q Consensus 288 ~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~--------~l~~~~~--------~~g~--~e~~ 349 (982)
+.+.++++.|+|||||||++-.+|..+... |..++.+++. .+..+.. +.|. .+..
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la~~l~~~-------G~~V~v~d~D~q~~~~~~al~~gl~~~~~~~~~~~~~~~~e~~ 76 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAAHAQLRQ-------GVRVMAGVVETHGRAETEALLNGLPQQPLLRTEYRGMTLEEMD 76 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHHHHHHHT-------TCCEEEEECCCTTCHHHHHHHTTSCBCCCEEEEETTEEEEECC
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHC-------CCCEEEEEeCCCCChhHHHHhcCccccCcceeecCCccccccc
Confidence 456679999999999999999999998654 5566555542 1221110 1010 1112
Q ss_pred HHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCCCeEEEEecCchhHhh---h----------hhc
Q 002012 350 LKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRGELRCIGATTLNEYRN---Y----------IEK 416 (982)
Q Consensus 350 l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g~i~vI~at~~~~~~~---~----------~~~ 416 (982)
+..++. . .+-+++|||+......+. ........ +...++. .+-+|.|+|-..... . -.+
T Consensus 77 l~~~L~---~--~pdlvIVDElG~~~~~~~-r~~~~~qD-V~~~l~s-gidVitT~Nlqh~esl~d~v~~itg~~v~e~v 148 (228)
T 2r8r_A 77 LDALLK---A--APSLVLVDELAHTNAPGS-RHTKRWQD-IQELLAA-GIDVYTTVNVQHLESLNDQVRGITGVQVRETL 148 (228)
T ss_dssp HHHHHH---H--CCSEEEESCTTCBCCTTC-SSSBHHHH-HHHHHHT-TCEEEEEEEGGGBGGGHHHHHHHHSCCCCSCB
T ss_pred HHHHHh---c--CCCEEEEeCCCCCCcccc-hhHHHHHH-HHHHHcC-CCCEEEEccccccccHHHHHHHHcCCCcCCcC
Confidence 222222 1 244899999986532221 11111222 2224444 466777777543211 1 123
Q ss_pred ChHHHhccceEEecCCCHHHHHHH
Q 002012 417 DPALERRFQQVFCDQPSVENTISI 440 (982)
Q Consensus 417 d~al~rRf~~i~i~~Ps~~e~~~I 440 (982)
+..+..+...|.+-..+++++.+-
T Consensus 149 pd~~~~~a~~v~lvD~~p~~l~~r 172 (228)
T 2r8r_A 149 PDWVLQEAFDLVLIDLPPRELLER 172 (228)
T ss_dssp CHHHHHTCSEEEEBCCCHHHHHHH
T ss_pred ccHHHhhCCeEEEecCCHHHHHHH
Confidence 556666666666666666654443
No 211
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.33 E-value=0.001 Score=86.97 Aligned_cols=157 Identities=13% Similarity=0.080 Sum_probs=88.2
Q ss_pred hhcCCCCCcccchHHHHHHHHHhccC--CCCCcEEeCCCCCcHHHHHHHHHHHhh--cCCCCCCCCCCeEEEEecccccc
Q 002012 263 ARSGKLDPVIGRDDEIRRCIQILSRR--TKNNPVIIGEPGVGKTAIAEGLAQRIV--RGDVPETLQNRKLISLDMASLVA 338 (982)
Q Consensus 263 ~~~~~l~~liG~~~~i~~l~~~L~~~--~~~~iLL~GppGvGKT~la~~la~~l~--~~~~p~~l~~~~v~~l~~~~l~~ 338 (982)
..|.....+|||+++++++.+.|... ..+-+.|+|++|+|||+||..+++... ... ....+++++.+....
T Consensus 118 ~~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~-----~~~~~~~v~~~~~~~ 192 (1249)
T 3sfz_A 118 GVPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGC-----FSGGVHWVSIGKQDK 192 (1249)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTT-----STTCEEEEECCSCCH
T ss_pred CCCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhh-----CCCeEEEEEECCcCc
Confidence 34556677999999999999988532 333467899999999999998876531 111 133456666543110
Q ss_pred ---------------c----ccccccHHHHHHHHHHHHH-hcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCCC
Q 002012 339 ---------------G----TCYRGDFEKRLKAVLKEVT-KSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRGE 398 (982)
Q Consensus 339 ---------------~----~~~~g~~e~~l~~l~~~~~-~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g~ 398 (982)
. ..........+...+.... ..+++++|+||+++... .+..+ ...
T Consensus 193 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~-------------~~~~~--~~~ 257 (1249)
T 3sfz_A 193 SGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW-------------VLKAF--DNQ 257 (1249)
T ss_dssp HHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH-------------HHTTT--CSS
T ss_pred hHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH-------------HHHhh--cCC
Confidence 0 0000111111222222221 12347899999998541 12222 234
Q ss_pred eEEEEecCchhHhhhhhcChHHHhccceEEecC-CCHHHHHHHHHHHH
Q 002012 399 LRCIGATTLNEYRNYIEKDPALERRFQQVFCDQ-PSVENTISILRGLR 445 (982)
Q Consensus 399 i~vI~at~~~~~~~~~~~d~al~rRf~~i~i~~-Ps~~e~~~IL~~~~ 445 (982)
..+|.||...... ..+...-..+.+.. .+.++..++|....
T Consensus 258 ~~ilvTtR~~~~~------~~~~~~~~~~~~~~~l~~~~a~~l~~~~~ 299 (1249)
T 3sfz_A 258 CQILLTTRDKSVT------DSVMGPKHVVPVESGLGREKGLEILSLFV 299 (1249)
T ss_dssp CEEEEEESSTTTT------TTCCSCBCCEECCSSCCHHHHHHHHHHHH
T ss_pred CEEEEEcCCHHHH------HhhcCCceEEEecCCCCHHHHHHHHHHhh
Confidence 5777777655411 01111123567775 78888888886543
No 212
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.32 E-value=0.00035 Score=75.89 Aligned_cols=72 Identities=14% Similarity=0.156 Sum_probs=41.0
Q ss_pred eEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccccccccCCCCCccccccCCchhHHHhhCCCeEEEEccc
Q 002012 695 SFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEI 774 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~~~~~Vl~lDEi 774 (982)
.++|+||||||||++|..++.. .+....|+.+...+..... - .........+.+.+.+.+ +||||++
T Consensus 125 viLI~GpPGsGKTtLAlqlA~~-~G~~VlyIs~~~eE~v~~~-----~-----~~le~~l~~i~~~l~~~~--LLVIDsI 191 (331)
T 2vhj_A 125 MVIVTGKGNSGKTPLVHALGEA-LGGKDKYATVRFGEPLSGY-----N-----TDFNVFVDDIARAMLQHR--VIVIDSL 191 (331)
T ss_dssp EEEEECSCSSSHHHHHHHHHHH-HHTTSCCEEEEBSCSSTTC-----B-----CCHHHHHHHHHHHHHHCS--EEEEECC
T ss_pred EEEEEcCCCCCHHHHHHHHHHh-CCCCEEEEEecchhhhhhh-----h-----cCHHHHHHHHHHHHhhCC--EEEEecc
Confidence 3789999999999999999986 2222234444223221100 0 000000012344555555 9999999
Q ss_pred cccCH
Q 002012 775 EKAHQ 779 (982)
Q Consensus 775 dkl~~ 779 (982)
+.+.+
T Consensus 192 ~aL~~ 196 (331)
T 2vhj_A 192 KNVIG 196 (331)
T ss_dssp TTTC-
T ss_pred ccccc
Confidence 98854
No 213
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.31 E-value=0.0006 Score=70.74 Aligned_cols=97 Identities=13% Similarity=0.074 Sum_probs=57.5
Q ss_pred eEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccc-cccccccccCCCCCccccccCCchhHHHhh----CCCeEE
Q 002012 695 SFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYM-EKHSVSRLVGAPPGYVGYEEGGQLTEVVRR----RPYSVV 769 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~-~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~----~~~~Vl 769 (982)
-++++||+|+|||+++..++..+...+..++.+....-. ....+..-+|.............+.+.+.. ..+.+|
T Consensus 14 i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~~~~dvV 93 (223)
T 2b8t_A 14 IEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFNDETKVI 93 (223)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSCTTCCEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHHHHHHhhCCCCCEE
Confidence 377899999999999998888775556666655322210 001121112321111111112235555554 346899
Q ss_pred EEccccccCHHHHHHHHHhhhc
Q 002012 770 LFDEIEKAHQDVFNILLQLLDD 791 (982)
Q Consensus 770 ~lDEidkl~~~~~~~Ll~~le~ 791 (982)
+|||+..++.+..+.+..+.+.
T Consensus 94 iIDEaQ~l~~~~ve~l~~L~~~ 115 (223)
T 2b8t_A 94 GIDEVQFFDDRICEVANILAEN 115 (223)
T ss_dssp EECSGGGSCTHHHHHHHHHHHT
T ss_pred EEecCccCcHHHHHHHHHHHhC
Confidence 9999999988877777655543
No 214
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=97.29 E-value=0.0015 Score=80.92 Aligned_cols=42 Identities=29% Similarity=0.255 Sum_probs=35.5
Q ss_pred cccchHHHHHHHHHhcc-CCCCCcEEeCCCCCcHHHHHHHHHH
Q 002012 271 VIGRDDEIRRCIQILSR-RTKNNPVIIGEPGVGKTAIAEGLAQ 312 (982)
Q Consensus 271 liG~~~~i~~l~~~L~~-~~~~~iLL~GppGvGKT~la~~la~ 312 (982)
.|||+.++..+.+.|.. ...+-+.|+|++|+||||||+.+++
T Consensus 130 ~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~ 172 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL 172 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHH
Confidence 49999999999998876 3334567889999999999999985
No 215
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.21 E-value=0.00056 Score=70.58 Aligned_cols=152 Identities=19% Similarity=0.180 Sum_probs=82.2
Q ss_pred CceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccccccccCC---CCC---ccccccC-CchhHHHhhCC
Q 002012 693 IASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRLVGA---PPG---YVGYEEG-GQLTEVVRRRP 765 (982)
Q Consensus 693 ~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l~g~---~~g---~vg~~~~-~~l~~~l~~~~ 765 (982)
..+++|.|++|||||+++-.+|..+...+..++.+++...........+-|. +.. +.|.... ..+...+.. .
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~al~~gl~~~~~~~~~~~~~~~~e~~l~~~L~~-~ 84 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETEALLNGLPQQPLLRTEYRGMTLEEMDLDALLKA-A 84 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHHHHHTTSCBCCCEEEEETTEEEEECCHHHHHHH-C
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHHHHhcCccccCcceeecCCcccccccHHHHHhc-C
Confidence 3469999999999999999999988666667766666542211111111111 111 1111111 234454554 4
Q ss_pred CeEEEEccccccCHH------HHHHHHHhhhcCceecCCCcEEecccEEEEEecCCChH-HHHHhhhhcccchHHHHHHH
Q 002012 766 YSVVLFDEIEKAHQD------VFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSH-YILETLQSVQDSKEAVYEVM 838 (982)
Q Consensus 766 ~~Vl~lDEidkl~~~------~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~-~i~~~~~~~~~~~~~~~~~~ 838 (982)
+.++++||+-..+.. ....+...++.| +=+|.|+|...- .+.+..
T Consensus 85 pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sg--------------idVitT~Nlqh~esl~d~v-------------- 136 (228)
T 2r8r_A 85 PSLVLVDELAHTNAPGSRHTKRWQDIQELLAAG--------------IDVYTTVNVQHLESLNDQV-------------- 136 (228)
T ss_dssp CSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTT--------------CEEEEEEEGGGBGGGHHHH--------------
T ss_pred CCEEEEeCCCCCCcccchhHHHHHHHHHHHcCC--------------CCEEEEccccccccHHHHH--------------
Confidence 579999998764211 333333455542 346788885421 111100
Q ss_pred HHHHHHHHHhhcChHHHhccccccccCCCChhHHHH
Q 002012 839 KKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISK 874 (982)
Q Consensus 839 ~~~~~~~~~~~f~p~ll~Rid~ii~F~pl~~~~l~~ 874 (982)
.....-.++.+++..++.+.|. |.+-.++.+++.+
T Consensus 137 ~~itg~~v~e~vpd~~~~~a~~-v~lvD~~p~~l~~ 171 (228)
T 2r8r_A 137 RGITGVQVRETLPDWVLQEAFD-LVLIDLPPRELLE 171 (228)
T ss_dssp HHHHSCCCCSCBCHHHHHTCSE-EEEBCCCHHHHHH
T ss_pred HHHcCCCcCCcCccHHHhhCCe-EEEecCCHHHHHH
Confidence 0000011235577788888864 5666677766543
No 216
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.20 E-value=0.0007 Score=78.58 Aligned_cols=113 Identities=23% Similarity=0.339 Sum_probs=63.9
Q ss_pred cchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhcCCCC-ceEEEecccccc----------c
Q 002012 667 GQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLFNTEN-ALVRIDMSEYME----------K 735 (982)
Q Consensus 667 Gq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~-~~v~i~~s~~~~----------~ 735 (982)
+|..++..+...+... . +++++.|+||||||+++..++..+...+. .++.+..+.-.. .
T Consensus 29 ~Q~~av~~~~~~i~~~--------~--~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~~~~~~ 98 (459)
T 3upu_A 29 GQKNAFNIVMKAIKEK--------K--HHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKLSGKEA 98 (459)
T ss_dssp HHHHHHHHHHHHHHSS--------S--CEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHHHSSCE
T ss_pred HHHHHHHHHHHHHhcC--------C--CEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHhhhccch
Confidence 5667777776666521 1 25999999999999999999998855444 333332221100 0
Q ss_pred cccccccCCCCCccccccCCch--hHHHhhCCCeEEEEccccccCHHHHHHHHHhhhc
Q 002012 736 HSVSRLVGAPPGYVGYEEGGQL--TEVVRRRPYSVVLFDEIEKAHQDVFNILLQLLDD 791 (982)
Q Consensus 736 ~~~~~l~g~~~g~vg~~~~~~l--~~~l~~~~~~Vl~lDEidkl~~~~~~~Ll~~le~ 791 (982)
..+.++++..+...+ ....+ ...-......+|++||+..++...+..|+..+..
T Consensus 99 ~T~h~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~iiiDE~~~~~~~~~~~l~~~~~~ 154 (459)
T 3upu_A 99 STIHSILKINPVTYE--ENVLFEQKEVPDLAKCRVLICDEVSMYDRKLFKILLSTIPP 154 (459)
T ss_dssp EEHHHHHTEEEEECS--SCEEEEECSCCCCSSCSEEEESCGGGCCHHHHHHHHHHSCT
T ss_pred hhHHHHhccCccccc--ccchhcccccccccCCCEEEEECchhCCHHHHHHHHHhccC
Confidence 001111221100000 00000 0000112357999999999999999999998863
No 217
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.17 E-value=0.00053 Score=89.76 Aligned_cols=78 Identities=14% Similarity=0.095 Sum_probs=54.2
Q ss_pred CcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEeccccc----c------ccccccc----HHHHHHHHHHHH
Q 002012 292 NPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLV----A------GTCYRGD----FEKRLKAVLKEV 357 (982)
Q Consensus 292 ~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~----~------~~~~~g~----~e~~l~~l~~~~ 357 (982)
.++++||||||||++|.+++.+-... +-+.++++..... . -.++.++ .|..+..++..+
T Consensus 1084 ~~l~~G~~g~GKT~la~~~~~~~~~~-------g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~a 1156 (1706)
T 3cmw_A 1084 IVEIYGPESSGKTTLTLQVIAAAQRE-------GKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALA 1156 (1706)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHT-------TCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHHHHhhhc-------CCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHH
Confidence 38899999999999999999766432 3444555543322 0 1234455 677787777666
Q ss_pred HhcCCCeEEEEccchhhhhC
Q 002012 358 TKSNGQIILFIDELHTIIGA 377 (982)
Q Consensus 358 ~~~~~~~IL~IDEi~~l~~~ 377 (982)
+. ..++++|+||++.|.+.
T Consensus 1157 r~-~~~~~i~~d~~~al~~~ 1175 (1706)
T 3cmw_A 1157 RS-GAVDVIVVDSVAALTPK 1175 (1706)
T ss_dssp HH-TCCSEEEESCGGGCCCH
T ss_pred Hh-cCCeEEEeCchHhcCcc
Confidence 55 66889999999988766
No 218
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.95 E-value=0.0016 Score=67.45 Aligned_cols=110 Identities=19% Similarity=0.160 Sum_probs=58.8
Q ss_pred CCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEeccccc---------ccc--------------------
Q 002012 290 KNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLV---------AGT-------------------- 340 (982)
Q Consensus 290 ~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~---------~~~-------------------- 340 (982)
...++|+||+|+||||+++.++..+... +..++.++..... .+.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRD-------GDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEKKLIIIDALMKEK 95 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHH-------TCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTTTEEEEECCC---
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHC-------CCeEEEEEcccCHHHHHHHHHHhcchHHHHhhCCEEEEecccccc
Confidence 4467889999999999999999765421 2233333211100 000
Q ss_pred --cc---cccHHHHHHHHHHHHHhcCCCe--EEEEccchhhhhCCCCCchhhHHHHHHhhhcCCCeEEEEecCch
Q 002012 341 --CY---RGDFEKRLKAVLKEVTKSNGQI--ILFIDELHTIIGAGNQSGAMDASNMLKPMLGRGELRCIGATTLN 408 (982)
Q Consensus 341 --~~---~g~~e~~l~~l~~~~~~~~~~~--IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g~i~vI~at~~~ 408 (982)
.+ .....+....+...+.. .++- +|+|||+..+.... ......+.+.|+.+.....+.+|.++...
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~llilDe~~~~~~~d-~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 96 EDQWSLVNLTPEELVNKVIEAKQK-LGYGKARLVIDSVSALFLDK-PAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp -CTTBCSSCCHHHHHHHHHHHHHH-HCSSCEEEEEETGGGGSSSC-GGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred CceeeecCCCHHHHHHHHHHHHHh-hCCCceEEEEECchHhhcCC-HHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 00 00223323333333333 3455 99999999875221 11224566667666655567777776554
No 219
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.95 E-value=0.0016 Score=86.23 Aligned_cols=81 Identities=15% Similarity=0.129 Sum_probs=52.1
Q ss_pred CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEeccccccc--ccccc------------cHHHHHHHH
Q 002012 288 RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAG--TCYRG------------DFEKRLKAV 353 (982)
Q Consensus 288 ~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~--~~~~g------------~~e~~l~~l 353 (982)
.+..+++|+||||||||++|.+++..... .+..+.++++...... ....| ..+..+..+
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~ala~ea~~-------~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~ 1497 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQVIAAAQR-------EGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEIC 1497 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHT-------TTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHH-------cCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHH
Confidence 35678999999999999999999887644 2567777776543211 00011 223333333
Q ss_pred HHHHHhcCCCeEEEEccchhhhh
Q 002012 354 LKEVTKSNGQIILFIDELHTIIG 376 (982)
Q Consensus 354 ~~~~~~~~~~~IL~IDEi~~l~~ 376 (982)
...++ ...+.+|||||++.+.+
T Consensus 1498 ~~lvr-~~~~~lVVIDsi~al~p 1519 (2050)
T 3cmu_A 1498 DALAR-SGAVDVIVVDSVAALTP 1519 (2050)
T ss_dssp HHHHH-HTCCSEEEESCGGGCCC
T ss_pred HHHHh-cCCCCEEEEcChhHhcc
Confidence 33333 35677999999987664
No 220
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.95 E-value=0.0016 Score=67.45 Aligned_cols=104 Identities=14% Similarity=0.102 Sum_probs=57.6
Q ss_pred CcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEeccc-------ccc--cccccccHHHHHHHHHHHHHhc--
Q 002012 292 NPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMAS-------LVA--GTCYRGDFEKRLKAVLKEVTKS-- 360 (982)
Q Consensus 292 ~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~-------l~~--~~~~~g~~e~~l~~l~~~~~~~-- 360 (982)
-++++||+|+||||++..++.++... +.+++.+...- +.+ |............+++..+...
T Consensus 14 i~litG~mGsGKTT~ll~~~~r~~~~-------g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~ 86 (223)
T 2b8t_A 14 IEFITGPMFAGKTAELIRRLHRLEYA-------DVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSNSF 86 (223)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHT-------TCCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTS
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhc-------CCEEEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHHHHHHhh
Confidence 45677999999999999998887543 34444442110 110 0000000000112344444431
Q ss_pred -CCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCCCeEEEEecCchhHh
Q 002012 361 -NGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRGELRCIGATTLNEYR 411 (982)
Q Consensus 361 -~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g~i~vI~at~~~~~~ 411 (982)
..+-+|+|||++.+. .+....+..+.+. .+.+|+++-..+|+
T Consensus 87 ~~~~dvViIDEaQ~l~--------~~~ve~l~~L~~~-gi~Vil~Gl~~df~ 129 (223)
T 2b8t_A 87 NDETKVIGIDEVQFFD--------DRICEVANILAEN-GFVVIISGLDKNFK 129 (223)
T ss_dssp CTTCCEEEECSGGGSC--------THHHHHHHHHHHT-TCEEEEECCSBCTT
T ss_pred CCCCCEEEEecCccCc--------HHHHHHHHHHHhC-CCeEEEEecccccc
Confidence 234599999999864 3444555444444 68888888765543
No 221
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.79 E-value=0.0017 Score=65.74 Aligned_cols=94 Identities=14% Similarity=0.187 Sum_probs=53.3
Q ss_pred EEeecCCCCchHHHHHHHHHHhcCCCCceEEEecc---ccccccccccccCCCCCccccccCCchhHHHhhCCCeEEEEc
Q 002012 696 FMFMGPTGVGKTELGKALADFLFNTENALVRIDMS---EYMEKHSVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFD 772 (982)
Q Consensus 696 lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s---~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~~~~~Vl~lD 772 (982)
.+++||.|+|||+.+..++..+...+..+..+... .+.+. .+..-+|......+......+.+.+. .++.+|+||
T Consensus 11 ~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~-~i~s~~g~~~~a~~~~~~~~i~~~~~-~~~dvViID 88 (191)
T 1xx6_A 11 EVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKE-DVVSHMGEKEQAVAIKNSREILKYFE-EDTEVIAID 88 (191)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------C-EEECTTSCEEECEEESSSTHHHHHCC-TTCSEEEEC
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHH-HHHhhcCCceeeEeeCCHHHHHHHHh-ccCCEEEEE
Confidence 77899999999999888887775555555555311 11111 11111221110111111122333333 246899999
Q ss_pred cccccCHHHHHHHHHhhhc
Q 002012 773 EIEKAHQDVFNILLQLLDD 791 (982)
Q Consensus 773 Eidkl~~~~~~~Ll~~le~ 791 (982)
|+.-++++..+.|..+.+.
T Consensus 89 Eaqfl~~~~v~~l~~l~~~ 107 (191)
T 1xx6_A 89 EVQFFDDEIVEIVNKIAES 107 (191)
T ss_dssp SGGGSCTHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHhC
Confidence 9999988887777666554
No 222
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.78 E-value=0.0016 Score=67.09 Aligned_cols=34 Identities=21% Similarity=0.238 Sum_probs=25.7
Q ss_pred CCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecc
Q 002012 291 NNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMA 334 (982)
Q Consensus 291 ~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~ 334 (982)
.-++|+||||+|||+++..++. . . +..++.++..
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~-~-~--------~~~v~~i~~~ 54 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL-L-S--------GKKVAYVDTE 54 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH-H-H--------CSEEEEEESS
T ss_pred EEEEEECCCCCCHHHHHHHHHH-H-c--------CCcEEEEECC
Confidence 3567889999999999999998 2 2 4566666643
No 223
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.73 E-value=0.0051 Score=64.23 Aligned_cols=25 Identities=32% Similarity=0.316 Sum_probs=21.4
Q ss_pred CCCcEEeCCCCCcHHHHHHHHHHHh
Q 002012 290 KNNPVIIGEPGVGKTAIAEGLAQRI 314 (982)
Q Consensus 290 ~~~iLL~GppGvGKT~la~~la~~l 314 (982)
..-++|+||||+|||+++..++...
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~ 48 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTC 48 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH
Confidence 3457889999999999999999863
No 224
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.67 E-value=0.0074 Score=61.70 Aligned_cols=94 Identities=16% Similarity=0.124 Sum_probs=51.7
Q ss_pred EEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccc---cccccccccccCCCCCccccccCCchhHHHhhCCCeEEEEc
Q 002012 696 FMFMGPTGVGKTELGKALADFLFNTENALVRIDMSE---YMEKHSVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFD 772 (982)
Q Consensus 696 lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~---~~~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~~~~~Vl~lD 772 (982)
.+++||.|+|||+.+..++..+...+..++.+...- +.+....+++ |......+......+.+.+. .++.+|+||
T Consensus 31 ~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d~R~ge~~i~s~~-g~~~~a~~~~~~~~~~~~~~-~~~dvViID 108 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDNRYSEEDVVSHN-GLKVKAVPVSASKDIFKHIT-EEMDVIAID 108 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC------------------CCEEECSSGGGGGGGCC-SSCCEEEEC
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCCcchHHHHHhhc-CCeeEEeecCCHHHHHHHHh-cCCCEEEEE
Confidence 557999999999998888877755566666554221 1111111221 32211111111122333332 246899999
Q ss_pred cccccCHHHHHHHHHhhhc
Q 002012 773 EIEKAHQDVFNILLQLLDD 791 (982)
Q Consensus 773 Eidkl~~~~~~~Ll~~le~ 791 (982)
|+.-++++..+.|..+.+.
T Consensus 109 EaQF~~~~~V~~l~~l~~~ 127 (214)
T 2j9r_A 109 EVQFFDGDIVEVVQVLANR 127 (214)
T ss_dssp CGGGSCTTHHHHHHHHHHT
T ss_pred CcccCCHHHHHHHHHHhhC
Confidence 9999988877766665554
No 225
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.67 E-value=0.017 Score=67.54 Aligned_cols=142 Identities=16% Similarity=0.218 Sum_probs=86.3
Q ss_pred CCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEeccc--cc--ccc-----cccccHH---HHHHHHHHHH
Q 002012 290 KNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMAS--LV--AGT-----CYRGDFE---KRLKAVLKEV 357 (982)
Q Consensus 290 ~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~--l~--~~~-----~~~g~~e---~~l~~l~~~~ 357 (982)
.+|+|+.|.+|+|||++++.+...+....-| ...+++-+|+.. +. .+. ....+.+ ..++.+..++
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP---~ev~lilIDpKg~eLs~~~~lPHl~~~Vvtd~~~a~~~L~~lv~EM 290 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILFKSTP---SEARLIMIDPKMLELSIYEGIPHLLCPVVTDMKEAANALRWSVAEM 290 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHTTCCT---TTEEEEEECSSSHHHHTTTTCTTBSSSCBCCHHHHHHHHHHHHHHH
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHHhCCC---cceEEEEeCCChhhhHhhcCCCcccceeeCCHHHHHHHHHHHHHHH
Confidence 4799999999999999999988777544333 256788888642 11 000 0011111 1111111110
Q ss_pred H----------------------h--------------------------cCCCeEEEEccchhhhhCCCCCchhhHHHH
Q 002012 358 T----------------------K--------------------------SNGQIILFIDELHTIIGAGNQSGAMDASNM 389 (982)
Q Consensus 358 ~----------------------~--------------------------~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~ 389 (982)
. . .-++.+|+|||++.+..... .++...
T Consensus 291 erR~~ll~~~gvrni~~Yn~~~~~~~~~G~~~~dp~~~~~~~~~~~~~~~~lP~ivvVIDE~~~L~~~~~----~~~~~~ 366 (574)
T 2iut_A 291 ERRYRLMAAMGVRNLAGFNRKVKDAEEAGTPLTDPLFRRESPDDEPPQLSTLPTIVVVVDEFADMMMIVG----KKVEEL 366 (574)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHTTCCCBCTTCCCCSTTCCCCBCCCCCEEEEEESCCTTHHHHTC----HHHHHH
T ss_pred HHHHHHHHHcCCccHHHHHHHHHHHhhcccccccccccccccccccccccCCCcEEEEEeCHHHHhhhhh----HHHHHH
Confidence 0 0 01237999999998874321 344455
Q ss_pred HHhhhcC---CCeEEEEecCchhHhhhhhcChHHHhccc-eEEecCCCHHHHHHHH
Q 002012 390 LKPMLGR---GELRCIGATTLNEYRNYIEKDPALERRFQ-QVFCDQPSVENTISIL 441 (982)
Q Consensus 390 L~~~le~---g~i~vI~at~~~~~~~~~~~d~al~rRf~-~i~i~~Ps~~e~~~IL 441 (982)
|..+... -.|.+|.+|..+.. -.++..++.-|. .|.+...+..+...||
T Consensus 367 L~~Iar~GRa~GIhLIlaTQRPs~---d~I~~~Iran~~~RI~lrv~s~~Dsr~IL 419 (574)
T 2iut_A 367 IARIAQKARAAGIHLILATQRPSV---DVITGLIKANIPTRIAFQVSSKIDSRTIL 419 (574)
T ss_dssp HHHHHHHCTTTTEEEEEEESCCCT---TTSCHHHHHTCCEEEEECCSCHHHHHHHH
T ss_pred HHHHHHHHhhCCeEEEEEecCccc---ccccHHHHhhhccEEEEEcCCHHHHHHhc
Confidence 5555543 47888888877641 146788888886 7777778888877776
No 226
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.63 E-value=0.00086 Score=67.21 Aligned_cols=33 Identities=36% Similarity=0.450 Sum_probs=28.4
Q ss_pred CCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEe
Q 002012 290 KNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLD 332 (982)
Q Consensus 290 ~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~ 332 (982)
..+++|+|+||+||||+++.|++.+ +..++..|
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l----------~~~~i~~d 37 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT----------KRILYDSD 37 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH----------CCCEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh----------CCCEEECh
Confidence 4579999999999999999999998 77776654
No 227
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.62 E-value=0.005 Score=68.59 Aligned_cols=93 Identities=24% Similarity=0.385 Sum_probs=52.6
Q ss_pred ceEEeecCCCCchHHHHHHHHHHhcCC-CCceEEEec-cccccccccccccCCCCCcccccc---CCchhHHHhhCCCeE
Q 002012 694 ASFMFMGPTGVGKTELGKALADFLFNT-ENALVRIDM-SEYMEKHSVSRLVGAPPGYVGYEE---GGQLTEVVRRRPYSV 768 (982)
Q Consensus 694 ~~lLf~Gp~GtGKT~lA~~la~~l~~~-~~~~v~i~~-s~~~~~~~~~~l~g~~~g~vg~~~---~~~l~~~l~~~~~~V 768 (982)
+.++++||+|+|||++.++++..+... +..++.+.- .++...... .++... .++... ...+..++. ..+.|
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~-~~v~q~--~~~~~~~~~~~~La~aL~-~~Pdv 199 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKK-CLVNQR--EVHRDTLGFSEALRSALR-EDPDI 199 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSS-SEEEEE--EBTTTBSCHHHHHHHHTT-SCCSE
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccc-cceeee--eeccccCCHHHHHHHHhh-hCcCE
Confidence 359999999999999999999988432 344443321 122111000 000000 011110 012333333 45579
Q ss_pred EEEccccccCHHHHHHHHHhhhcC
Q 002012 769 VLFDEIEKAHQDVFNILLQLLDDG 792 (982)
Q Consensus 769 l~lDEidkl~~~~~~~Ll~~le~g 792 (982)
|++||+- +++....++++.+.|
T Consensus 200 illDEp~--d~e~~~~~~~~~~~G 221 (356)
T 3jvv_A 200 ILVGEMR--DLETIRLALTAAETG 221 (356)
T ss_dssp EEESCCC--SHHHHHHHHHHHHTT
T ss_pred EecCCCC--CHHHHHHHHHHHhcC
Confidence 9999997 677888888887764
No 228
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.58 E-value=0.006 Score=68.17 Aligned_cols=79 Identities=14% Similarity=0.193 Sum_probs=48.9
Q ss_pred CCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccc-------ccc-------ccccHHHHHHHHHH
Q 002012 290 KNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVA-------GTC-------YRGDFEKRLKAVLK 355 (982)
Q Consensus 290 ~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~-------~~~-------~~g~~e~~l~~l~~ 355 (982)
..-++|+||||+|||++|..++..+... +..+++++...-.. +.. .....+ .+...+.
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~-------g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e-~~l~~l~ 145 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKA-------GGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGE-QALEIME 145 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT-------TCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHH-HHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHC-------CCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHH-HHHHHHH
Confidence 4457888999999999999998876442 45666666432111 000 001222 2334444
Q ss_pred HHHhcCCCeEEEEccchhhhh
Q 002012 356 EVTKSNGQIILFIDELHTIIG 376 (982)
Q Consensus 356 ~~~~~~~~~IL~IDEi~~l~~ 376 (982)
.+....+..+|+||.+..+..
T Consensus 146 ~l~~~~~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 146 LLVRSGAIDVVVVDSVAALTP 166 (366)
T ss_dssp HHHTTTCCSEEEEECTTTCCC
T ss_pred HHHhcCCCCEEEEeChHHhcc
Confidence 444445566999999999874
No 229
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.55 E-value=0.039 Score=62.83 Aligned_cols=77 Identities=19% Similarity=0.162 Sum_probs=47.9
Q ss_pred CCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEeccccccc------------------ccccccHHHHHH
Q 002012 290 KNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAG------------------TCYRGDFEKRLK 351 (982)
Q Consensus 290 ~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~------------------~~~~g~~e~~l~ 351 (982)
+.-++++|++|+||||++..||..+... +.++.-+++.....+ .....+....+.
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~-------G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~ 172 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKR-------GYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAK 172 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTT-------TCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHC-------CCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHH
Confidence 3456788999999999999999988543 556666554332110 011123344445
Q ss_pred HHHHHHHhcCCCeEEEEccchhh
Q 002012 352 AVLKEVTKSNGQIILFIDELHTI 374 (982)
Q Consensus 352 ~l~~~~~~~~~~~IL~IDEi~~l 374 (982)
..+..+... +.-+++||....+
T Consensus 173 ~al~~a~~~-~~DvVIIDTaGrl 194 (443)
T 3dm5_A 173 EGVDYFKSK-GVDIIIVDTAGRH 194 (443)
T ss_dssp HHHHHHHHT-TCSEEEEECCCCS
T ss_pred HHHHHHHhC-CCCEEEEECCCcc
Confidence 566666652 2338999987654
No 230
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.55 E-value=0.00093 Score=73.05 Aligned_cols=100 Identities=21% Similarity=0.197 Sum_probs=54.2
Q ss_pred CCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccccccccccHHHHHHHHHHHHHhcCCCeEEEEcc
Q 002012 291 NNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFIDE 370 (982)
Q Consensus 291 ~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDE 370 (982)
..++|+||+|+|||+++..||+.+ +..++..|.-.+..+.. .|... .-..+... -+ -.|+|.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l----------~~~iis~Ds~qvy~~~~-igTak----p~~~e~~g--vp-h~lid~ 67 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL----------PCELISVDSALIYRGMD-IGTAK----PSRELLAR--YP-HRLIDI 67 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS----------CEEEEEECTTTTBTTCC-TTTTC----CCHHHHHH--SC-EETSSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc----------CCcEEeccchhhhcCCC-cccCC----CCHHHHcC--CC-EEEeec
Confidence 357899999999999999999998 77777776322211110 00000 00011111 12 467777
Q ss_pred chhhhhCCCCCchhhHHHHHHhhhcCCCeEEEEecCch
Q 002012 371 LHTIIGAGNQSGAMDASNMLKPMLGRGELRCIGATTLN 408 (982)
Q Consensus 371 i~~l~~~~~~~~~~~~~~~L~~~le~g~i~vI~at~~~ 408 (982)
++-....+.......+...+..+..+|.+.++..++..
T Consensus 68 ~~~~~~~~~~~F~~~a~~~i~~i~~~g~~~IlvGGt~~ 105 (323)
T 3crm_A 68 RDPAESYSAAEFRADALAAMAKATARGRIPLLVGGTML 105 (323)
T ss_dssp BCTTSCCCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred cCcccccCHHHHHHHHHHHHHHHHHcCCeEEEECCchh
Confidence 65432111001112344556666678887766666554
No 231
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.51 E-value=0.0014 Score=65.16 Aligned_cols=34 Identities=15% Similarity=0.295 Sum_probs=27.8
Q ss_pred CCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecc
Q 002012 291 NNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMA 334 (982)
Q Consensus 291 ~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~ 334 (982)
..++|+|+||+||||+++.|++.+ +..++.++..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l----------~~~~~~~~~D 37 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL----------PEPWLAFGVD 37 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS----------SSCEEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc----------CCCeEEeccc
Confidence 457899999999999999999998 5566665543
No 232
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.51 E-value=0.022 Score=64.88 Aligned_cols=96 Identities=9% Similarity=0.111 Sum_probs=55.2
Q ss_pred CceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEecccccccc-----ccccccCCCC--CccccccCCch---hHHHh
Q 002012 693 IASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKH-----SVSRLVGAPP--GYVGYEEGGQL---TEVVR 762 (982)
Q Consensus 693 ~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~-----~~~~l~g~~~--g~vg~~~~~~l---~~~l~ 762 (982)
...++|+|++|+|||+++..||..+...+..+..+++..+.... .+....|.+. .+.+.+....+ ...++
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~ 179 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFK 179 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHH
Confidence 34599999999999999999999987667777777776553210 0111112110 00111111111 22334
Q ss_pred hCCCeEEEEccccccC--HHHHHHHHHh
Q 002012 763 RRPYSVVLFDEIEKAH--QDVFNILLQL 788 (982)
Q Consensus 763 ~~~~~Vl~lDEidkl~--~~~~~~Ll~~ 788 (982)
...+.++++|..-..+ ......|..+
T Consensus 180 ~~~~DvVIIDTaGrl~~d~~lm~el~~i 207 (443)
T 3dm5_A 180 SKGVDIIIVDTAGRHKEDKALIEEMKQI 207 (443)
T ss_dssp HTTCSEEEEECCCCSSCCHHHHHHHHHH
T ss_pred hCCCCEEEEECCCcccchHHHHHHHHHH
Confidence 4567899999887665 3444444433
No 233
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.50 E-value=0.0041 Score=73.95 Aligned_cols=90 Identities=22% Similarity=0.340 Sum_probs=54.5
Q ss_pred eEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccc----------cccccccccCCCCCccccccCCchhHHHhhC
Q 002012 695 SFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYM----------EKHSVSRLVGAPPGYVGYEEGGQLTEVVRRR 764 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~----------~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~~ 764 (982)
.+++.||||||||+++..++..+...+..++.+-.+.-. ....+.++++..+. ++... .-...
T Consensus 206 ~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~~--~~~~~-----~~~~~ 278 (574)
T 3e1s_A 206 LVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGPQ--GFRHN-----HLEPA 278 (574)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEETT--EESCS-----SSSCC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCcc--hhhhh-----hcccc
Confidence 489999999999999999998875545555433221100 00111223322110 11000 00112
Q ss_pred CCeEEEEccccccCHHHHHHHHHhhhc
Q 002012 765 PYSVVLFDEIEKAHQDVFNILLQLLDD 791 (982)
Q Consensus 765 ~~~Vl~lDEidkl~~~~~~~Ll~~le~ 791 (982)
+.++|++||+..++......|+..+..
T Consensus 279 ~~dvlIIDEasml~~~~~~~Ll~~~~~ 305 (574)
T 3e1s_A 279 PYDLLIVDEVSMMGDALMLSLLAAVPP 305 (574)
T ss_dssp SCSEEEECCGGGCCHHHHHHHHTTSCT
T ss_pred cCCEEEEcCccCCCHHHHHHHHHhCcC
Confidence 457999999999999999988887753
No 234
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.47 E-value=0.0088 Score=61.81 Aligned_cols=24 Identities=38% Similarity=0.475 Sum_probs=21.1
Q ss_pred CCcEEeCCCCCcHHHHHHHHHHHh
Q 002012 291 NNPVIIGEPGVGKTAIAEGLAQRI 314 (982)
Q Consensus 291 ~~iLL~GppGvGKT~la~~la~~l 314 (982)
.-+.|+||+|+||||+++.++..+
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 357889999999999999999865
No 235
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.37 E-value=0.0016 Score=66.20 Aligned_cols=34 Identities=29% Similarity=0.500 Sum_probs=28.4
Q ss_pred CCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEe
Q 002012 289 TKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLD 332 (982)
Q Consensus 289 ~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~ 332 (982)
....++|+|+||+||||+++.|++.+ +..++..|
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l----------~~~~i~~d 57 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL----------NVPFIDLD 57 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH----------TCCEEEHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc----------CCCEEcch
Confidence 34579999999999999999999998 66666543
No 236
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.32 E-value=0.0051 Score=68.54 Aligned_cols=81 Identities=12% Similarity=0.154 Sum_probs=49.2
Q ss_pred CCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccccc---cc----------cccHHHHHHHHHH
Q 002012 289 TKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGT---CY----------RGDFEKRLKAVLK 355 (982)
Q Consensus 289 ~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~---~~----------~g~~e~~l~~l~~ 355 (982)
....++|+|+||+|||++|..++..+... +..+++++...-.... .+ .....+.+..++.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~-------g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~ 134 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQRE-------GKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICD 134 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT-------TCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC-------CCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHH
Confidence 34467888999999999999999877543 4567777653211100 00 0011223344444
Q ss_pred HHHhcCCCeEEEEccchhhhh
Q 002012 356 EVTKSNGQIILFIDELHTIIG 376 (982)
Q Consensus 356 ~~~~~~~~~IL~IDEi~~l~~ 376 (982)
.+....+..+|+||.+..+..
T Consensus 135 ~l~~~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 135 ALARSGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HHHHHTCCSEEEEECGGGCCC
T ss_pred HHHhccCCCEEEEcCHHHhcc
Confidence 444335566999999998863
No 237
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.30 E-value=0.0023 Score=63.82 Aligned_cols=26 Identities=38% Similarity=0.630 Sum_probs=23.6
Q ss_pred CCCCcEEeCCCCCcHHHHHHHHHHHh
Q 002012 289 TKNNPVIIGEPGVGKTAIAEGLAQRI 314 (982)
Q Consensus 289 ~~~~iLL~GppGvGKT~la~~la~~l 314 (982)
...+++|+|+||+||||+++.|++.+
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 34579999999999999999999988
No 238
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.26 E-value=0.0068 Score=62.69 Aligned_cols=36 Identities=14% Similarity=0.192 Sum_probs=27.8
Q ss_pred eEEeecCCCCchHHHHHHHHHHhcCCCCceEEEecc
Q 002012 695 SFMFMGPTGVGKTELGKALADFLFNTENALVRIDMS 730 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s 730 (982)
.++++||+|+|||++++.++..+...+..++.++..
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~ 60 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTE 60 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESS
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcc
Confidence 488999999999999999997764444566656543
No 239
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.23 E-value=0.0023 Score=63.45 Aligned_cols=23 Identities=43% Similarity=0.637 Sum_probs=22.1
Q ss_pred CcEEeCCCCCcHHHHHHHHHHHh
Q 002012 292 NPVIIGEPGVGKTAIAEGLAQRI 314 (982)
Q Consensus 292 ~iLL~GppGvGKT~la~~la~~l 314 (982)
+++|+|+||+||||+++.||+.+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 68999999999999999999998
No 240
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.23 E-value=0.002 Score=64.75 Aligned_cols=25 Identities=44% Similarity=0.628 Sum_probs=22.7
Q ss_pred CCCCcEEeCCCCCcHHHHHHHHHHH
Q 002012 289 TKNNPVIIGEPGVGKTAIAEGLAQR 313 (982)
Q Consensus 289 ~~~~iLL~GppGvGKT~la~~la~~ 313 (982)
.+.+++|+|+||+||||+++.|++.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4557899999999999999999998
No 241
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.23 E-value=0.0025 Score=62.67 Aligned_cols=23 Identities=17% Similarity=0.224 Sum_probs=21.6
Q ss_pred CcEEeCCCCCcHHHHHHHHHHHh
Q 002012 292 NPVIIGEPGVGKTAIAEGLAQRI 314 (982)
Q Consensus 292 ~iLL~GppGvGKT~la~~la~~l 314 (982)
.++|+|+||+||||+++.|++.+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999998
No 242
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.23 E-value=0.017 Score=62.54 Aligned_cols=97 Identities=25% Similarity=0.195 Sum_probs=52.4
Q ss_pred CcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccccccccccHHHHHHHHHHHHHhcCCCeEEEEccc
Q 002012 292 NPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFIDEL 371 (982)
Q Consensus 292 ~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi 371 (982)
-++|+||+|+|||+|+..||+.+ +..+++.|.-.+-.+.. .|. -+.-..+.. +-+ --|||.+
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~----------~~~iis~Ds~QvYr~~~-igT----akp~~~E~~--gvp-hhlid~~ 66 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRL----------NGEVISGDSMQVYRGMD-IGT----AKITAEEMD--GVP-HHLIDIK 66 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTT----------TEEEEECCGGGGBTTCC-TTT----TCCCHHHHT--TCC-EESSSCB
T ss_pred EEEEECCCcCCHHHHHHHHHHhC----------ccceeecCcccceeeee-ecC----CCCCHHHHc--CCC-EEEeccC
Confidence 36778999999999999999987 66666665321111110 110 000001111 222 4677765
Q ss_pred hhhhhCCCCC--chhhHHHHHHhhhcCCCeEEEEecCch
Q 002012 372 HTIIGAGNQS--GAMDASNMLKPMLGRGELRCIGATTLN 408 (982)
Q Consensus 372 ~~l~~~~~~~--~~~~~~~~L~~~le~g~i~vI~at~~~ 408 (982)
+-- ..-+. ...++...+..+.++|++.+|.-+|.-
T Consensus 67 ~~~--e~~s~~~F~~~a~~~i~~i~~~gk~pIlVGGTgl 103 (322)
T 3exa_A 67 DPS--ESFSVADFQDLATPLITEIHERGRLPFLVGGTGL 103 (322)
T ss_dssp CTT--SCCCHHHHHHHHHHHHHHHHHTTCEEEEESCCHH
T ss_pred Chh--hhccHHHHHHHHHHHHHHHHhCCCcEEEEcCcHH
Confidence 521 11111 123455666667778988777666543
No 243
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.21 E-value=0.011 Score=65.83 Aligned_cols=78 Identities=17% Similarity=0.149 Sum_probs=47.0
Q ss_pred CCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccc-------ccc-------ccccHHHHHHHHHH
Q 002012 290 KNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVA-------GTC-------YRGDFEKRLKAVLK 355 (982)
Q Consensus 290 ~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~-------~~~-------~~g~~e~~l~~l~~ 355 (982)
..-++|+||||+|||+++..++..+... +..+++++...-.. |.. .....++ +..++.
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~~-------g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~-~l~~~~ 132 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQAA-------GGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQ-ALEIAD 132 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT-------TCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHH-HHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC-------CCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHH-HHHHHH
Confidence 4457889999999999999998776442 44566665432111 000 0001222 223444
Q ss_pred HHHhcCCCeEEEEccchhhh
Q 002012 356 EVTKSNGQIILFIDELHTII 375 (982)
Q Consensus 356 ~~~~~~~~~IL~IDEi~~l~ 375 (982)
.+....++.+|+||++..+.
T Consensus 133 ~l~~~~~~~lIVIDsl~~l~ 152 (349)
T 2zr9_A 133 MLVRSGALDIIVIDSVAALV 152 (349)
T ss_dssp HHHTTTCCSEEEEECGGGCC
T ss_pred HHHhcCCCCEEEEcChHhhc
Confidence 34333456799999999886
No 244
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.19 E-value=0.0022 Score=63.13 Aligned_cols=33 Identities=27% Similarity=0.468 Sum_probs=28.0
Q ss_pred CCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEe
Q 002012 290 KNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLD 332 (982)
Q Consensus 290 ~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~ 332 (982)
..+++|+|+||+||||+++.|++.+ +.+++..|
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l----------g~~~id~D 39 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL----------KLEVLDTD 39 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH----------TCCEEEHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh----------CCCEEECh
Confidence 4579999999999999999999998 77776653
No 245
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.18 E-value=0.012 Score=61.40 Aligned_cols=27 Identities=26% Similarity=0.436 Sum_probs=21.7
Q ss_pred CCCCcEEeCCCCCcHHHHHHHHHHHhh
Q 002012 289 TKNNPVIIGEPGVGKTAIAEGLAQRIV 315 (982)
Q Consensus 289 ~~~~iLL~GppGvGKT~la~~la~~l~ 315 (982)
....++|+||||+|||+++..++..+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~ 48 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGL 48 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 344678899999999999988876654
No 246
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.18 E-value=0.0053 Score=61.98 Aligned_cols=24 Identities=29% Similarity=0.560 Sum_probs=21.8
Q ss_pred CcEEeCCCCCcHHHHHHHHHHHhh
Q 002012 292 NPVIIGEPGVGKTAIAEGLAQRIV 315 (982)
Q Consensus 292 ~iLL~GppGvGKT~la~~la~~l~ 315 (982)
.+.|+||+|+||||+++.|+..+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 578999999999999999999875
No 247
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.17 E-value=0.031 Score=56.01 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=20.8
Q ss_pred CcEEeCCCCCcHHHHHHHHHHHh
Q 002012 292 NPVIIGEPGVGKTAIAEGLAQRI 314 (982)
Q Consensus 292 ~iLL~GppGvGKT~la~~la~~l 314 (982)
.++|+||+|+|||||++.|....
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 48999999999999999998775
No 248
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.15 E-value=0.0027 Score=63.46 Aligned_cols=32 Identities=34% Similarity=0.630 Sum_probs=27.3
Q ss_pred CCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEe
Q 002012 291 NNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLD 332 (982)
Q Consensus 291 ~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~ 332 (982)
..++|+|+||+||||+++.|++.+ +..++..|
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l----------g~~~id~D 34 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL----------GVGLLDTD 34 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH----------TCCEEEHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc----------CCCEEeCc
Confidence 468899999999999999999998 66766544
No 249
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.14 E-value=0.0093 Score=60.09 Aligned_cols=116 Identities=14% Similarity=0.134 Sum_probs=66.9
Q ss_pred ceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccc----cccccccccc------cCCCCCccccccC---------
Q 002012 694 ASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSE----YMEKHSVSRL------VGAPPGYVGYEEG--------- 754 (982)
Q Consensus 694 ~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~----~~~~~~~~~l------~g~~~g~vg~~~~--------- 754 (982)
+.+++++++|.|||++|-.+|-...+.+..+..+..-. +.+...+..+ .|. ++.-..+.
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~--gf~~~~~~~~~~~~~a~ 106 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMAT--GFTWETQNREADTAACM 106 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCT--TCCCCGGGHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEccc--ccccCCCCcHHHHHHHH
Confidence 35999999999999999999998877777766663221 1111112222 121 33211110
Q ss_pred ---CchhHHHhhCCCeEEEEcccccc---CHHHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCChHHHHH
Q 002012 755 ---GQLTEVVRRRPYSVVLFDEIEKA---HQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILE 822 (982)
Q Consensus 755 ---~~l~~~l~~~~~~Vl~lDEidkl---~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~~~~i~~ 822 (982)
....+.+....+++|+|||+-.+ .---.+.+++++... +.+.-+|+|+|..+..+.+
T Consensus 107 ~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~R-----------p~~~~vIlTGr~ap~~l~e 169 (196)
T 1g5t_A 107 AVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNAR-----------PGHQTVIITGRGCHRDILD 169 (196)
T ss_dssp HHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTS-----------CTTCEEEEECSSCCHHHHH
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhC-----------cCCCEEEEECCCCcHHHHH
Confidence 01122233356789999999432 111223455666531 2356799999987776654
No 250
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.14 E-value=0.0066 Score=65.59 Aligned_cols=35 Identities=29% Similarity=0.517 Sum_probs=27.9
Q ss_pred eEEeecCCCCchHHHHHHHHHHhcCCCCceEEEecccc
Q 002012 695 SFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEY 732 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~ 732 (982)
.++|.||||+|||++|+.|++.+ +..++.+++..+
T Consensus 35 livl~G~sGsGKSTla~~L~~~~---~~~~~~Is~D~~ 69 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLRSAIFEET---QGNVIVIDNDTF 69 (287)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHT---TTCCEEECTHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechHh
Confidence 48899999999999999999876 234567776444
No 251
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.13 E-value=0.011 Score=65.58 Aligned_cols=84 Identities=17% Similarity=0.169 Sum_probs=50.1
Q ss_pred eEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccccccccCCCCCcccc---ccCCchh----HHHhhCCCe
Q 002012 695 SFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRLVGAPPGYVGY---EEGGQLT----EVVRRRPYS 767 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l~g~~~g~vg~---~~~~~l~----~~l~~~~~~ 767 (982)
.++++||||+|||+++..++..+...+..++.++..+..... ...-+|......-. .....+. ..++....+
T Consensus 63 i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~-ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~~~~d 141 (356)
T 3hr8_A 63 IVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPV-YAKNLGVDLKSLLISQPDHGEQALEIVDELVRSGVVD 141 (356)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH-HHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHTSCCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchH-HHHHcCCchhhhhhhhccCHHHHHHHHHHHhhhcCCC
Confidence 488999999999999999998875556677888876533221 11112222111000 0001122 223345668
Q ss_pred EEEEccccccCH
Q 002012 768 VVLFDEIEKAHQ 779 (982)
Q Consensus 768 Vl~lDEidkl~~ 779 (982)
+++||.+..+.+
T Consensus 142 lvVIDSi~~l~~ 153 (356)
T 3hr8_A 142 LIVVDSVAALVP 153 (356)
T ss_dssp EEEEECTTTCCC
T ss_pred eEEehHhhhhcC
Confidence 999999987764
No 252
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.12 E-value=0.014 Score=64.98 Aligned_cols=83 Identities=17% Similarity=0.236 Sum_probs=49.3
Q ss_pred eEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccccccccCCCCCccc---cccCCchhH----HHhhCCCe
Q 002012 695 SFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRLVGAPPGYVG---YEEGGQLTE----VVRRRPYS 767 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l~g~~~g~vg---~~~~~~l~~----~l~~~~~~ 767 (982)
.++++||||+|||++|..++..+...+..++.++...-.... ....+|......- .....++.+ .++....+
T Consensus 63 iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~-~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~~~~ 141 (349)
T 2zr9_A 63 VIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPE-YAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGALD 141 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH-HHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHH-HHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhcCCCC
Confidence 388999999999999999997765556677788776432211 1112232111000 000111222 23345578
Q ss_pred EEEEccccccC
Q 002012 768 VVLFDEIEKAH 778 (982)
Q Consensus 768 Vl~lDEidkl~ 778 (982)
+||||++..+.
T Consensus 142 lIVIDsl~~l~ 152 (349)
T 2zr9_A 142 IIVIDSVAALV 152 (349)
T ss_dssp EEEEECGGGCC
T ss_pred EEEEcChHhhc
Confidence 99999999876
No 253
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.11 E-value=0.018 Score=63.88 Aligned_cols=79 Identities=16% Similarity=0.205 Sum_probs=47.1
Q ss_pred CCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccc-------c-------ccccccHHHHHHHHHH
Q 002012 290 KNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVA-------G-------TCYRGDFEKRLKAVLK 355 (982)
Q Consensus 290 ~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~-------~-------~~~~g~~e~~l~~l~~ 355 (982)
..-++|+||||+||||++..++..+... +..+++++...... + .......+..+ ..+.
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~-------gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l-~~~~ 132 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKM-------GGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQAL-EIVD 132 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHT-------TCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHH-HHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhc-------CCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHH-HHHH
Confidence 3357788999999999999999887532 45666666433111 0 00011223322 3333
Q ss_pred HHHhcCCCeEEEEccchhhhh
Q 002012 356 EVTKSNGQIILFIDELHTIIG 376 (982)
Q Consensus 356 ~~~~~~~~~IL~IDEi~~l~~ 376 (982)
.+.....+.+++||.+..+.+
T Consensus 133 ~l~~~~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSVAALVP 153 (356)
T ss_dssp HHHHTSCCSEEEEECTTTCCC
T ss_pred HHhhhcCCCeEEehHhhhhcC
Confidence 333334556999999988764
No 254
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.10 E-value=0.015 Score=60.76 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=20.6
Q ss_pred CCCCcEEeCCCCCcHHHHHHHHHH
Q 002012 289 TKNNPVIIGEPGVGKTAIAEGLAQ 312 (982)
Q Consensus 289 ~~~~iLL~GppGvGKT~la~~la~ 312 (982)
...-+.|+||+|+||||+++.++.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 344678999999999999999984
No 255
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.08 E-value=0.014 Score=58.70 Aligned_cols=119 Identities=16% Similarity=0.131 Sum_probs=66.3
Q ss_pred CCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEeccc---------ccc-----------ccccccc---
Q 002012 289 TKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMAS---------LVA-----------GTCYRGD--- 345 (982)
Q Consensus 289 ~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~---------l~~-----------~~~~~g~--- 345 (982)
.+.++++++.+|.||||+|-++|.+.... |.++..+.+-. +.. +..+..+
T Consensus 27 ~~g~i~v~tG~GkGKTTaA~GlalRA~g~-------G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~ 99 (196)
T 1g5t_A 27 ERGIIIVFTGNGKGKTTAAFGTAARAVGH-------GKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNRE 99 (196)
T ss_dssp CCCCEEEEESSSSCHHHHHHHHHHHHHHT-------TCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHH
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHHC-------CCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcH
Confidence 56789999999999999999999987654 55665553211 110 0000010
Q ss_pred -HHHHHHHHHHHHHhc---CCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCCCeEEEEecCchhHhhhhhcChHHH
Q 002012 346 -FEKRLKAVLKEVTKS---NGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRGELRCIGATTLNEYRNYIEKDPALE 421 (982)
Q Consensus 346 -~e~~l~~l~~~~~~~---~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g~i~vI~at~~~~~~~~~~~d~al~ 421 (982)
.+......+..+... +..-+|+|||+.....-+--+ ..++.++|..- ....-+|.|++..+ +.|.
T Consensus 100 ~~~~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~-~~ev~~~l~~R--p~~~~vIlTGr~ap--------~~l~ 168 (196)
T 1g5t_A 100 ADTAACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLP-LEEVISALNAR--PGHQTVIITGRGCH--------RDIL 168 (196)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSC-HHHHHHHHHTS--CTTCEEEEECSSCC--------HHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCC-HHHHHHHHHhC--cCCCEEEEECCCCc--------HHHH
Confidence 112233334434322 334599999998765433211 12333333211 34678888888753 4555
Q ss_pred hccc
Q 002012 422 RRFQ 425 (982)
Q Consensus 422 rRf~ 425 (982)
..-+
T Consensus 169 e~AD 172 (196)
T 1g5t_A 169 DLAD 172 (196)
T ss_dssp HHCS
T ss_pred HhCc
Confidence 5554
No 256
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.06 E-value=0.0069 Score=65.43 Aligned_cols=97 Identities=22% Similarity=0.214 Sum_probs=52.9
Q ss_pred CcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccccccccccHHHHHHHHHHHHHhcCCCeEEEEccc
Q 002012 292 NPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGTCYRGDFEKRLKAVLKEVTKSNGQIILFIDEL 371 (982)
Q Consensus 292 ~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi 371 (982)
-++|+||+|+|||+|+..||+.+ +..+++.|.-.+-.+.. .|. -+.--.+..... --|||.+
T Consensus 12 ~i~i~GptgsGKt~la~~La~~~----------~~~iis~Ds~qvY~~~~-igT----akp~~~E~~~v~---hhlid~~ 73 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIELRKIL----------PVELISVDSALIYKGMD-IGT----AKPNAEELLAAP---HRLLDIR 73 (316)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS----------CEEEEECCTTTTBTTCC-TTT----TCCCHHHHHHSC---EETSSCB
T ss_pred EEEEECCCccCHHHHHHHHHHhC----------CCcEEeccccccccccc-ccC----CCCCHHHHcCCC---EEEeccC
Confidence 35678999999999999999988 66777776322221110 000 000001122111 3566655
Q ss_pred hhhhhCCCCC--chhhHHHHHHhhhcCCCeEEEEecCch
Q 002012 372 HTIIGAGNQS--GAMDASNMLKPMLGRGELRCIGATTLN 408 (982)
Q Consensus 372 ~~l~~~~~~~--~~~~~~~~L~~~le~g~i~vI~at~~~ 408 (982)
+-- ..-+. ...++...+..+.++|++.++..+|.-
T Consensus 74 ~~~--e~~s~~~f~~~a~~~i~~i~~~g~~pilVGGTgl 110 (316)
T 3foz_A 74 DPS--QAYSAADFRRDALAEMADITAAGRIPLLVGGTML 110 (316)
T ss_dssp CTT--SCCCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred Ccc--ccccHHHHHHHHHHHHHHHHhCCCcEEEEcCcHH
Confidence 421 11111 123455566677778988777666654
No 257
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.05 E-value=0.028 Score=64.05 Aligned_cols=40 Identities=25% Similarity=0.273 Sum_probs=32.1
Q ss_pred CceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEecccc
Q 002012 693 IASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEY 732 (982)
Q Consensus 693 ~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~ 732 (982)
...++|+||+|+|||+++..||..+...+..+..+++..+
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~ 136 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVY 136 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCcc
Confidence 3458999999999999999999988666666666666544
No 258
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.05 E-value=0.022 Score=60.60 Aligned_cols=25 Identities=28% Similarity=0.555 Sum_probs=22.4
Q ss_pred ceEEeecCCCCchHHHHHHHHHHhc
Q 002012 694 ASFMFMGPTGVGKTELGKALADFLF 718 (982)
Q Consensus 694 ~~lLf~Gp~GtGKT~lA~~la~~l~ 718 (982)
..++|+||+|+|||++.++|+..+.
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~~~ 50 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDYIN 50 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHHhCC
Confidence 3589999999999999999999874
No 259
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=96.04 E-value=0.013 Score=70.07 Aligned_cols=46 Identities=13% Similarity=0.179 Sum_probs=35.6
Q ss_pred cccccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHH
Q 002012 663 KRVIGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALAD 715 (982)
Q Consensus 663 ~~iiGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~ 715 (982)
..++|.+..+..|...+... ......++++||+|+|||++|..+++
T Consensus 124 ~~~vGR~~~l~~L~~~L~~~-------~~~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 124 VVFVTRKKLVNAIQQKLSKL-------KGEPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp SSCCCCHHHHHHHHHHHTTS-------TTSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred CeecccHHHHHHHHHHHhcc-------cCCCceEEEEcCCCCCHHHHHHHHHh
Confidence 56899999999888877532 11223489999999999999999864
No 260
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.02 E-value=0.016 Score=63.65 Aligned_cols=46 Identities=22% Similarity=0.259 Sum_probs=29.8
Q ss_pred CCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEeccc
Q 002012 289 TKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMAS 335 (982)
Q Consensus 289 ~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~ 335 (982)
...-++|+||||+|||+++..++....... +....+..+++++...
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~-~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPP-EKGGLSGKAVYIDTEG 151 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCG-GGTCCSCEEEEEESSS
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhccc-ccCCCCCeEEEEECCC
Confidence 344678899999999999999997752210 0000145677776543
No 261
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.98 E-value=0.018 Score=65.02 Aligned_cols=115 Identities=15% Similarity=0.206 Sum_probs=58.8
Q ss_pred CCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCC--CCCCeEEEEecccccc-----------cc-------------cc
Q 002012 289 TKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPET--LQNRKLISLDMASLVA-----------GT-------------CY 342 (982)
Q Consensus 289 ~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~--l~~~~v~~l~~~~l~~-----------~~-------------~~ 342 (982)
...-++|+||||+|||||+..++-... .|.. ..+..+++++...... +. .+
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~---~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~ 253 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQ---IPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAY 253 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTT---SCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhc---cCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccC
Confidence 344578899999999999997764431 1211 0245677776433110 00 00
Q ss_pred cc-cHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCC-ch--------hhHHHHHHhhhcCCCeEEEEecCc
Q 002012 343 RG-DFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQS-GA--------MDASNMLKPMLGRGELRCIGATTL 407 (982)
Q Consensus 343 ~g-~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~-~~--------~~~~~~L~~~le~g~i~vI~at~~ 407 (982)
.. .....+..+...+.. ..+.+|+||++..+......+ +. ..+.+.|+.+.....+.+|.++..
T Consensus 254 ~~~~~~~~l~~~~~~l~~-~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv 327 (400)
T 3lda_A 254 NADHQLRLLDAAAQMMSE-SRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQV 327 (400)
T ss_dssp SHHHHHHHHHHHHHHHHH-SCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred ChHHHHHHHHHHHHHHHh-cCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEee
Confidence 00 011112222233333 456799999998876532211 11 234455555555556666666543
No 262
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.96 E-value=0.0038 Score=61.59 Aligned_cols=25 Identities=40% Similarity=0.671 Sum_probs=22.7
Q ss_pred CCCcEEeCCCCCcHHHHHHHHHHHh
Q 002012 290 KNNPVIIGEPGVGKTAIAEGLAQRI 314 (982)
Q Consensus 290 ~~~iLL~GppGvGKT~la~~la~~l 314 (982)
+..++|+||+|+||||+++.|+..+
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3468999999999999999999987
No 263
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.95 E-value=0.012 Score=65.50 Aligned_cols=119 Identities=11% Similarity=0.239 Sum_probs=62.0
Q ss_pred CCCcccchHHHHHHHHHhccCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEe-ccccccc-------
Q 002012 268 LDPVIGRDDEIRRCIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLD-MASLVAG------- 339 (982)
Q Consensus 268 l~~liG~~~~i~~l~~~L~~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~-~~~l~~~------- 339 (982)
++++ |....++.+. ..+...++++||+|+||||+.++++..+.... +..++.+. ...+...
T Consensus 106 l~~l-g~~~~l~~l~----~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~------~~~i~t~ed~~e~~~~~~~~~v~ 174 (356)
T 3jvv_A 106 MEEL-GMGEVFKRVS----DVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTK------YHHILTIEDPIEFVHESKKCLVN 174 (356)
T ss_dssp TTTT-TCCHHHHHHH----HCSSEEEEEECSTTSCHHHHHHHHHHHHHHHC------CCEEEEEESSCCSCCCCSSSEEE
T ss_pred HHHc-CChHHHHHHH----hCCCCEEEEECCCCCCHHHHHHHHHhcccCCC------CcEEEEccCcHHhhhhcccccee
Confidence 4443 3344555542 23444788999999999999999998875320 12222221 1000000
Q ss_pred ccccccHHHHHHHHHHHHHhcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCCCeEEEEecCchh
Q 002012 340 TCYRGDFEKRLKAVLKEVTKSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRGELRCIGATTLNE 409 (982)
Q Consensus 340 ~~~~g~~e~~l~~l~~~~~~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g~i~vI~at~~~~ 409 (982)
....+.....+...+..+.. ..|-||++||+-. .+....+..+...|.. +|.++....
T Consensus 175 q~~~~~~~~~~~~~La~aL~-~~PdvillDEp~d----------~e~~~~~~~~~~~G~~-vl~t~H~~~ 232 (356)
T 3jvv_A 175 QREVHRDTLGFSEALRSALR-EDPDIILVGEMRD----------LETIRLALTAAETGHL-VFGTLHTTS 232 (356)
T ss_dssp EEEBTTTBSCHHHHHHHHTT-SCCSEEEESCCCS----------HHHHHHHHHHHHTTCE-EEEEESCSS
T ss_pred eeeeccccCCHHHHHHHHhh-hCcCEEecCCCCC----------HHHHHHHHHHHhcCCE-EEEEEccCh
Confidence 00000000112223433433 3455999999962 4455666666667766 555555443
No 264
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.95 E-value=0.029 Score=60.71 Aligned_cols=28 Identities=14% Similarity=0.169 Sum_probs=23.2
Q ss_pred CCCCcEEeCCCCCcHHHHHHHHHHHhhc
Q 002012 289 TKNNPVIIGEPGVGKTAIAEGLAQRIVR 316 (982)
Q Consensus 289 ~~~~iLL~GppGvGKT~la~~la~~l~~ 316 (982)
...-++|+||||+||||+++.++..+..
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~ 61 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGT 61 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 3445778899999999999999988753
No 265
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.93 E-value=0.0039 Score=61.80 Aligned_cols=35 Identities=14% Similarity=0.336 Sum_probs=28.4
Q ss_pred eEEeecCCCCchHHHHHHHHHHhcCCCCceEEEecccc
Q 002012 695 SFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEY 732 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~ 732 (982)
.++|.|+||+|||++|+.|++.+ +.+++.++...+
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~l---~~~~~~~~~D~~ 39 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSVL---PEPWLAFGVDSL 39 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHS---SSCEEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc---CCCeEEeccchH
Confidence 38899999999999999999987 456666655443
No 266
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.92 E-value=0.0068 Score=66.40 Aligned_cols=32 Identities=28% Similarity=0.467 Sum_probs=26.8
Q ss_pred CCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEe
Q 002012 291 NNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLD 332 (982)
Q Consensus 291 ~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~ 332 (982)
..++|+||+|+|||+|+..||+.+ +..++..|
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l----------~~eiIs~D 72 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHF----------PLEVINSD 72 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTS----------CEEEEECC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHC----------CCcEEccc
Confidence 357889999999999999999987 56666655
No 267
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.91 E-value=0.012 Score=61.49 Aligned_cols=37 Identities=24% Similarity=0.232 Sum_probs=28.7
Q ss_pred eEEeecCCCCchHHHHHHHHHHh-cC-----CCCceEEEeccc
Q 002012 695 SFMFMGPTGVGKTELGKALADFL-FN-----TENALVRIDMSE 731 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l-~~-----~~~~~v~i~~s~ 731 (982)
.++|+||||+|||++++.++... .. .+...+.++...
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred EEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 48899999999999999999853 21 145677787665
No 268
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.89 E-value=0.0044 Score=65.69 Aligned_cols=31 Identities=32% Similarity=0.410 Sum_probs=26.9
Q ss_pred CcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEe
Q 002012 292 NPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLD 332 (982)
Q Consensus 292 ~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~ 332 (982)
.++|+||||+||||+|+.||+.+ +..++..|
T Consensus 3 li~I~G~~GSGKSTla~~La~~~----------~~~~i~~D 33 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET----------GWPVVALD 33 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH----------CCCEEECC
T ss_pred EEEEECCCCcCHHHHHHHHHhcC----------CCeEEecc
Confidence 36789999999999999999998 67777765
No 269
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.88 E-value=0.0035 Score=63.30 Aligned_cols=23 Identities=39% Similarity=0.619 Sum_probs=21.5
Q ss_pred EEeecCCCCchHHHHHHHHHHhc
Q 002012 696 FMFMGPTGVGKTELGKALADFLF 718 (982)
Q Consensus 696 lLf~Gp~GtGKT~lA~~la~~l~ 718 (982)
+.|+||+|+|||++.+.|+..+.
T Consensus 4 i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 4 VFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp EEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHHhhcc
Confidence 78999999999999999999875
No 270
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.87 E-value=0.0094 Score=59.96 Aligned_cols=91 Identities=15% Similarity=0.144 Sum_probs=51.5
Q ss_pred EEeecCCCCchH-HHHHHHHHHhcCCCCceEEEecc---ccccccccccccCCCCCccccccCCchhHHHhhCCCeEEEE
Q 002012 696 FMFMGPTGVGKT-ELGKALADFLFNTENALVRIDMS---EYMEKHSVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLF 771 (982)
Q Consensus 696 lLf~Gp~GtGKT-~lA~~la~~l~~~~~~~v~i~~s---~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~~~~~Vl~l 771 (982)
.+++||.|+||| ++.+++.++... +..++.+... .+.. . +..-+|.....+.......+.+..+. ..||+|
T Consensus 23 ~fiyG~MgsGKTt~Ll~~i~n~~~~-~~kvl~~kp~~D~R~~~-~-i~S~~g~~~~A~~~~~~~d~~~~~~~--~DvIlI 97 (195)
T 1w4r_A 23 QVILGPMFSGKSTELMRRVRRFQIA-QYKCLVIKYAKDTRYSS-S-FCTHDRNTMEALPACLLRDVAQEALG--VAVIGI 97 (195)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHT-TCCEEEEEETTCCCGGG-S-CCHHHHHHSEEEEESSGGGGHHHHHT--CSEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHc-CCeEEEEccccCccchh-h-hhhccCCcccceecCCHHHHHHhccC--CCEEEE
Confidence 567899999999 899999888754 4555555532 2221 1 11111211000011112234444333 469999
Q ss_pred ccccccCHHHHHHHHHhhhcC
Q 002012 772 DEIEKAHQDVFNILLQLLDDG 792 (982)
Q Consensus 772 DEidkl~~~~~~~Ll~~le~g 792 (982)
||++-+ ++..+.+..+.+.|
T Consensus 98 DEaQFf-k~~ve~~~~L~~~g 117 (195)
T 1w4r_A 98 DEGQFF-PDIVEFCEAMANAG 117 (195)
T ss_dssp SSGGGC-TTHHHHHHHHHHTT
T ss_pred Echhhh-HHHHHHHHHHHHCC
Confidence 999999 77666665555543
No 271
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.86 E-value=0.0045 Score=61.03 Aligned_cols=24 Identities=25% Similarity=0.515 Sum_probs=22.3
Q ss_pred CCcEEeCCCCCcHHHHHHHHHHHh
Q 002012 291 NNPVIIGEPGVGKTAIAEGLAQRI 314 (982)
Q Consensus 291 ~~iLL~GppGvGKT~la~~la~~l 314 (982)
..++|+|+||+||||+++.|++.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 368899999999999999999998
No 272
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.86 E-value=0.0032 Score=63.25 Aligned_cols=24 Identities=29% Similarity=0.584 Sum_probs=22.0
Q ss_pred CCcEEeCCCCCcHHHHHHHHHHHh
Q 002012 291 NNPVIIGEPGVGKTAIAEGLAQRI 314 (982)
Q Consensus 291 ~~iLL~GppGvGKT~la~~la~~l 314 (982)
..++|+|+||+||||+++.|++.+
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 457889999999999999999988
No 273
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.86 E-value=0.008 Score=61.64 Aligned_cols=34 Identities=24% Similarity=0.274 Sum_probs=27.9
Q ss_pred eEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccc
Q 002012 695 SFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSE 731 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~ 731 (982)
.++++||||+|||+++..++. . .+.+++.++...
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~-~--~~~~v~~i~~~~ 55 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL-L--SGKKVAYVDTEG 55 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH-H--HCSEEEEEESSC
T ss_pred EEEEECCCCCCHHHHHHHHHH-H--cCCcEEEEECCC
Confidence 389999999999999999998 2 356777777654
No 274
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=95.85 E-value=0.018 Score=69.14 Aligned_cols=26 Identities=19% Similarity=0.279 Sum_probs=21.9
Q ss_pred CCeEEEEccccccCHHHHHHHHHhhh
Q 002012 765 PYSVVLFDEIEKAHQDVFNILLQLLD 790 (982)
Q Consensus 765 ~~~Vl~lDEidkl~~~~~~~Ll~~le 790 (982)
+..+|++||++.++......|+..+.
T Consensus 262 ~~d~lIIDEAsml~~~~~~~Ll~~l~ 287 (608)
T 1w36_D 262 HLDVLVVDEASMIDLPMMSRLIDALP 287 (608)
T ss_dssp SCSEEEECSGGGCBHHHHHHHHHTCC
T ss_pred CCCEEEEechhhCCHHHHHHHHHhCC
Confidence 45699999999999888888887764
No 275
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.84 E-value=0.0044 Score=62.95 Aligned_cols=26 Identities=31% Similarity=0.598 Sum_probs=23.0
Q ss_pred CCCCcEEeCCCCCcHHHHHHHHHHHh
Q 002012 289 TKNNPVIIGEPGVGKTAIAEGLAQRI 314 (982)
Q Consensus 289 ~~~~iLL~GppGvGKT~la~~la~~l 314 (982)
.+..++|+|+||+||||+++.|++.+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34468899999999999999999988
No 276
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.83 E-value=0.0044 Score=64.00 Aligned_cols=26 Identities=38% Similarity=0.598 Sum_probs=23.4
Q ss_pred CCCCcEEeCCCCCcHHHHHHHHHHHh
Q 002012 289 TKNNPVIIGEPGVGKTAIAEGLAQRI 314 (982)
Q Consensus 289 ~~~~iLL~GppGvGKT~la~~la~~l 314 (982)
++..++|+|+||+||||+++.|++.+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34578999999999999999999998
No 277
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.81 E-value=0.0075 Score=60.91 Aligned_cols=100 Identities=18% Similarity=0.173 Sum_probs=54.1
Q ss_pred cEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecc--------cccc--cccccccHHHHHHHHHHHHHhcCC
Q 002012 293 PVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMA--------SLVA--GTCYRGDFEKRLKAVLKEVTKSNG 362 (982)
Q Consensus 293 iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~--------~l~~--~~~~~g~~e~~l~~l~~~~~~~~~ 362 (982)
.+++||+|+||||.+-.++.+.... +.+++.+... .+.+ |............++++.+. +.
T Consensus 11 ~v~~G~mgsGKTT~ll~~a~r~~~~-------g~kV~v~k~~~d~r~~~~~i~s~~g~~~~a~~~~~~~~i~~~~~--~~ 81 (191)
T 1xx6_A 11 EVIVGPMYSGKSEELIRRIRRAKIA-------KQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNSREILKYFE--ED 81 (191)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHT-------TCCEEEEEEC-------CEEECTTSCEEECEEESSSTHHHHHCC--TT
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHC-------CCEEEEEEeccCccchHHHHHhhcCCceeeEeeCCHHHHHHHHh--cc
Confidence 4677999999999999998887543 3344433210 0100 00000000000123443332 12
Q ss_pred CeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCCCeEEEEecCchhH
Q 002012 363 QIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRGELRCIGATTLNEY 410 (982)
Q Consensus 363 ~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g~i~vI~at~~~~~ 410 (982)
.-+|+|||++.+. .+....+..+.+. .+.||+++-..+|
T Consensus 82 ~dvViIDEaqfl~--------~~~v~~l~~l~~~-~~~Vi~~Gl~~df 120 (191)
T 1xx6_A 82 TEVIAIDEVQFFD--------DEIVEIVNKIAES-GRRVICAGLDMDF 120 (191)
T ss_dssp CSEEEECSGGGSC--------THHHHHHHHHHHT-TCEEEEEECSBCT
T ss_pred CCEEEEECCCCCC--------HHHHHHHHHHHhC-CCEEEEEeccccc
Confidence 2389999999864 3345566655555 6778887765553
No 278
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=95.81 E-value=0.055 Score=62.82 Aligned_cols=72 Identities=11% Similarity=0.163 Sum_probs=48.0
Q ss_pred eEEEEccchhhhhCCCCCchhhHHHHHHhhhcCC---CeEEEEecCchhHhhhhhcChHHHhccc-eEEecCCCHHHHHH
Q 002012 364 IILFIDELHTIIGAGNQSGAMDASNMLKPMLGRG---ELRCIGATTLNEYRNYIEKDPALERRFQ-QVFCDQPSVENTIS 439 (982)
Q Consensus 364 ~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g---~i~vI~at~~~~~~~~~~~d~al~rRf~-~i~i~~Ps~~e~~~ 439 (982)
.+|+|||.+.+.... ...+.+.|..+...| .+.+|.+|..+.. -.++..++.-|. .|.+...+..+...
T Consensus 299 ivlvIDE~~~ll~~~----~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~---dvl~~~i~~n~~~RI~lrv~s~~dsr~ 371 (512)
T 2ius_A 299 IVVLVDEFADLMMTV----GKKVEELIARLAQKARAAGIHLVLATQRPSV---DVITGLIKANIPTRIAFTVSSKIDSRT 371 (512)
T ss_dssp EEEEEETHHHHHHHH----HHHHHHHHHHHHHHCGGGTEEEEEEESCCCT---TTSCHHHHHHCCEEEEECCSSHHHHHH
T ss_pred EEEEEeCHHHHHhhh----hHHHHHHHHHHHHHhhhCCcEEEEEecCCcc---ccccHHHHhhcCCeEEEEcCCHHHHHH
Confidence 589999999886421 123445555444332 6777777776541 146778888885 77888888888877
Q ss_pred HHH
Q 002012 440 ILR 442 (982)
Q Consensus 440 IL~ 442 (982)
|+.
T Consensus 372 ilg 374 (512)
T 2ius_A 372 ILD 374 (512)
T ss_dssp HHS
T ss_pred hcC
Confidence 763
No 279
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.81 E-value=0.0051 Score=61.44 Aligned_cols=28 Identities=32% Similarity=0.579 Sum_probs=24.2
Q ss_pred eEEeecCCCCchHHHHHHHHHHhcCCCCceE
Q 002012 695 SFMFMGPTGVGKTELGKALADFLFNTENALV 725 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v 725 (982)
.++|+||||+|||++|+.||+.+ +.+++
T Consensus 7 ~i~l~G~~GsGKst~a~~La~~l---~~~~i 34 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVGSQLAKLT---KRILY 34 (185)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH---CCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCCEE
Confidence 48999999999999999999988 44443
No 280
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.78 E-value=0.0044 Score=62.45 Aligned_cols=25 Identities=32% Similarity=0.558 Sum_probs=22.8
Q ss_pred CCCcEEeCCCCCcHHHHHHHHHHHh
Q 002012 290 KNNPVIIGEPGVGKTAIAEGLAQRI 314 (982)
Q Consensus 290 ~~~iLL~GppGvGKT~la~~la~~l 314 (982)
+..++|+|+||+||||+++.|++.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4468899999999999999999988
No 281
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.77 E-value=0.0041 Score=61.12 Aligned_cols=22 Identities=36% Similarity=0.504 Sum_probs=19.8
Q ss_pred CcEEeCCCCCcHHHHHHHHHHHh
Q 002012 292 NPVIIGEPGVGKTAIAEGLAQRI 314 (982)
Q Consensus 292 ~iLL~GppGvGKT~la~~la~~l 314 (982)
.++|+|+||+||||+++.| +.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHT
T ss_pred EEEEECCCCCCHHHHHHHH-HHC
Confidence 5788999999999999999 666
No 282
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.77 E-value=0.029 Score=62.17 Aligned_cols=45 Identities=20% Similarity=0.180 Sum_probs=29.2
Q ss_pred CCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEeccc
Q 002012 290 KNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMAS 335 (982)
Q Consensus 290 ~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~ 335 (982)
..-++|+||||+|||+++..++....... .....+..+++++...
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~~~~~-~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTAQLPG-AGGYPGGKIIFIDTEN 166 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHTTSCB-TTTBCCCEEEEEESSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccc-ccCCCCCeEEEEECCC
Confidence 33568889999999999999987642210 0001255777777543
No 283
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=95.75 E-value=0.021 Score=59.67 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=21.0
Q ss_pred CCcEEeCCCCCcHHHHHHHHHHHh
Q 002012 291 NNPVIIGEPGVGKTAIAEGLAQRI 314 (982)
Q Consensus 291 ~~iLL~GppGvGKT~la~~la~~l 314 (982)
.+++++||+|+|||.++..++..+
T Consensus 109 ~~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 109 KRGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp SEEEEEESSSTTHHHHHHHHHHHS
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHc
Confidence 359999999999999999888765
No 284
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.74 E-value=0.006 Score=61.99 Aligned_cols=25 Identities=28% Similarity=0.575 Sum_probs=22.7
Q ss_pred CCCcEEeCCCCCcHHHHHHHHHHHh
Q 002012 290 KNNPVIIGEPGVGKTAIAEGLAQRI 314 (982)
Q Consensus 290 ~~~iLL~GppGvGKT~la~~la~~l 314 (982)
...++|+|++|+||||+++.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3468899999999999999999988
No 285
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.74 E-value=0.013 Score=61.94 Aligned_cols=36 Identities=22% Similarity=0.423 Sum_probs=28.6
Q ss_pred ceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEecccc
Q 002012 694 ASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEY 732 (982)
Q Consensus 694 ~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~ 732 (982)
..++|.|+||+|||++|+.|++.+ +..++.+|...+
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~~l---~~~~~~~~~D~~ 68 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQKEF---QGNIVIIDGDSF 68 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHHHT---TTCCEEECGGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc---CCCcEEEecHHH
Confidence 358999999999999999999987 334566666554
No 286
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=95.74 E-value=0.022 Score=67.53 Aligned_cols=44 Identities=14% Similarity=0.154 Sum_probs=34.9
Q ss_pred ccchHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHH
Q 002012 666 IGQDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALAD 715 (982)
Q Consensus 666 iGq~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~ 715 (982)
+|.+..++.|.+.+.... ......+.++|+.|+|||++|+.+++
T Consensus 131 ~GR~~~~~~l~~~L~~~~------~~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC------DLDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT------TSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhccc------CCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 599999999988885431 12234588999999999999999996
No 287
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.73 E-value=0.023 Score=63.66 Aligned_cols=88 Identities=18% Similarity=0.322 Sum_probs=48.9
Q ss_pred ceEEeecCCCCchHHHHHHHHHHhcCC-CCceEEEeccccccccccccccCCCCCcccc-----cc---CCchhHHHhhC
Q 002012 694 ASFMFMGPTGVGKTELGKALADFLFNT-ENALVRIDMSEYMEKHSVSRLVGAPPGYVGY-----EE---GGQLTEVVRRR 764 (982)
Q Consensus 694 ~~lLf~Gp~GtGKT~lA~~la~~l~~~-~~~~v~i~~s~~~~~~~~~~l~g~~~g~vg~-----~~---~~~l~~~l~~~ 764 (982)
..++++||+|+|||++.++|+..+... ...++.++.. . + .... ...+++.. .. ...+...++.
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~-~-e-~~~~----~~~~~v~Q~~~g~~~~~~~~~l~~~L~~- 208 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP-I-E-YVFK----HKKSIVNQREVGEDTKSFADALRAALRE- 208 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESS-C-C-SCCC----CSSSEEEEEEBTTTBSCSHHHHHHHTTS-
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEeccc-H-h-hhhc----cCceEEEeeecCCCHHHHHHHHHHHhhh-
Confidence 358999999999999999999987433 3444444421 1 0 0000 00111111 10 1123444444
Q ss_pred CCeEEEEccccccCHHHHHHHHHhhhc
Q 002012 765 PYSVVLFDEIEKAHQDVFNILLQLLDD 791 (982)
Q Consensus 765 ~~~Vl~lDEidkl~~~~~~~Ll~~le~ 791 (982)
.+.+|++||+- +++....+++....
T Consensus 209 ~pd~illdE~~--d~e~~~~~l~~~~~ 233 (372)
T 2ewv_A 209 DPDVIFVGEMR--DLETVETALRAAET 233 (372)
T ss_dssp CCSEEEESCCC--SHHHHHHHHHHHTT
T ss_pred CcCEEEECCCC--CHHHHHHHHHHHhc
Confidence 45799999996 45555455555443
No 288
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.71 E-value=0.057 Score=59.09 Aligned_cols=41 Identities=20% Similarity=0.356 Sum_probs=32.4
Q ss_pred CCceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEecccc
Q 002012 692 PIASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEY 732 (982)
Q Consensus 692 p~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~ 732 (982)
+...++|+||+|+|||+++..||..+...+..+..+++.-+
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~ 144 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTF 144 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 34458899999999999999999988655667776776543
No 289
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.69 E-value=0.015 Score=60.78 Aligned_cols=37 Identities=16% Similarity=0.223 Sum_probs=29.0
Q ss_pred eEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccc
Q 002012 695 SFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSE 731 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~ 731 (982)
.++++||||+|||+++..++..+...+.+++.++...
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE 61 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC
Confidence 4889999999999999988876654566777776543
No 290
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.69 E-value=0.018 Score=60.93 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=22.2
Q ss_pred CCCcEEeCCCCCcHHHHHHHHHHHh
Q 002012 290 KNNPVIIGEPGVGKTAIAEGLAQRI 314 (982)
Q Consensus 290 ~~~iLL~GppGvGKT~la~~la~~l 314 (982)
+..++|+|+||+||||+++.|++.+
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3457889999999999999999987
No 291
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.67 E-value=0.034 Score=61.78 Aligned_cols=38 Identities=26% Similarity=0.337 Sum_probs=26.5
Q ss_pred HHHHHHHHHhccCCCCCcEEeCCCCCcHHHHHHHHHHHh
Q 002012 276 DEIRRCIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRI 314 (982)
Q Consensus 276 ~~i~~l~~~L~~~~~~~iLL~GppGvGKT~la~~la~~l 314 (982)
..+..++. ..-....-+.|+||||+||||++..++..+
T Consensus 118 ~~LD~lL~-ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 118 KSLDKLLG-GGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp HHHHHHHT-SSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHHHHHhc-CCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 44555543 111234457789999999999999999875
No 292
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.67 E-value=0.017 Score=64.49 Aligned_cols=83 Identities=23% Similarity=0.272 Sum_probs=48.8
Q ss_pred eEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccccccccCCCCCcccc---ccCCchhH----HHhhCCCe
Q 002012 695 SFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRLVGAPPGYVGY---EEGGQLTE----VVRRRPYS 767 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l~g~~~g~vg~---~~~~~l~~----~l~~~~~~ 767 (982)
.++++||||+|||++|..++..+...+.+++.++...-.+.. ...-+|.....+-. .....+.. .++....+
T Consensus 76 li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~-~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~~~~~ 154 (366)
T 1xp8_A 76 ITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPV-YARALGVNTDELLVSQPDNGEQALEIMELLVRSGAID 154 (366)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH-HHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCS
T ss_pred EEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHH-HHHHcCCCHHHceeecCCcHHHHHHHHHHHHhcCCCC
Confidence 388899999999999999988765456678888876532221 11112221110000 00112222 23345678
Q ss_pred EEEEccccccC
Q 002012 768 VVLFDEIEKAH 778 (982)
Q Consensus 768 Vl~lDEidkl~ 778 (982)
+||||.+..+.
T Consensus 155 lVVIDsl~~l~ 165 (366)
T 1xp8_A 155 VVVVDSVAALT 165 (366)
T ss_dssp EEEEECTTTCC
T ss_pred EEEEeChHHhc
Confidence 99999998775
No 293
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.66 E-value=0.012 Score=59.12 Aligned_cols=95 Identities=19% Similarity=0.191 Sum_probs=52.2
Q ss_pred CcEEeCCCCCcHH-HHHHHHHHHhhcCCCCCCCCCCeEEEEecccccccccccccHHHH------------HHHHHHHHH
Q 002012 292 NPVIIGEPGVGKT-AIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGTCYRGDFEKR------------LKAVLKEVT 358 (982)
Q Consensus 292 ~iLL~GppGvGKT-~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~~~~g~~e~~------------l~~l~~~~~ 358 (982)
=.+++||.|+||| .|.+++.+.... +.+++.+... +.. +|..++... ..+++....
T Consensus 22 l~fiyG~MgsGKTt~Ll~~i~n~~~~--------~~kvl~~kp~-~D~--R~~~~i~S~~g~~~~A~~~~~~~d~~~~~~ 90 (195)
T 1w4r_A 22 IQVILGPMFSGKSTELMRRVRRFQIA--------QYKCLVIKYA-KDT--RYSSSFCTHDRNTMEALPACLLRDVAQEAL 90 (195)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHT--------TCCEEEEEET-TCC--CGGGSCCHHHHHHSEEEEESSGGGGHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHc--------CCeEEEEccc-cCc--cchhhhhhccCCcccceecCCHHHHHHhcc
Confidence 3567899999999 888888887644 4566666532 110 000001111 112333333
Q ss_pred hcCCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCCCeEEEEecCchhH
Q 002012 359 KSNGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRGELRCIGATTLNEY 410 (982)
Q Consensus 359 ~~~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g~i~vI~at~~~~~ 410 (982)
.. -+|+|||++-+ +. ....+..+.+ .++.||+++-..+|
T Consensus 91 ~~---DvIlIDEaQFf-k~--------~ve~~~~L~~-~gk~VI~~GL~~DF 129 (195)
T 1w4r_A 91 GV---AVIGIDEGQFF-PD--------IVEFCEAMAN-AGKTVIVAALDGTF 129 (195)
T ss_dssp TC---SEEEESSGGGC-TT--------HHHHHHHHHH-TTCEEEEEEESBCT
T ss_pred CC---CEEEEEchhhh-HH--------HHHHHHHHHH-CCCeEEEEeccccc
Confidence 22 28999999988 21 3334444444 44567776655444
No 294
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.65 E-value=0.0071 Score=61.40 Aligned_cols=28 Identities=29% Similarity=0.531 Sum_probs=23.9
Q ss_pred CCCCCceEEeecCCCCchHHHHHHHHHHh
Q 002012 689 PARPIASFMFMGPTGVGKTELGKALADFL 717 (982)
Q Consensus 689 ~~~p~~~lLf~Gp~GtGKT~lA~~la~~l 717 (982)
+..|. .++|.|+||+|||++|+.|++.+
T Consensus 17 ~~~~~-~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 17 RGSHM-RVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCSCC-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCe-EEEEECCCCCCHHHHHHHHHHHh
Confidence 34454 48999999999999999999987
No 295
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.64 E-value=0.016 Score=64.49 Aligned_cols=83 Identities=19% Similarity=0.251 Sum_probs=49.6
Q ss_pred eEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccccccccCCCCCcc--cc-ccCCchhH----HHhhCCCe
Q 002012 695 SFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRLVGAPPGYV--GY-EEGGQLTE----VVRRRPYS 767 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l~g~~~g~v--g~-~~~~~l~~----~l~~~~~~ 767 (982)
.++++||||+|||++|..++..+...+.+++.++...-.+.. ...-+|...... .. .....+.+ .++....+
T Consensus 65 ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~-~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~~~~~ 143 (356)
T 1u94_A 65 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPI-YARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVD 143 (356)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH-HHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHH-HHHHcCCChhheeeeCCCCHHHHHHHHHHHHhccCCC
Confidence 389999999999999999998775556678888875432211 111122211100 00 00111222 23346678
Q ss_pred EEEEccccccC
Q 002012 768 VVLFDEIEKAH 778 (982)
Q Consensus 768 Vl~lDEidkl~ 778 (982)
+|+||.+..+.
T Consensus 144 lVVIDsl~~l~ 154 (356)
T 1u94_A 144 VIVVDSVAALT 154 (356)
T ss_dssp EEEEECGGGCC
T ss_pred EEEEcCHHHhc
Confidence 99999998876
No 296
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.60 E-value=0.009 Score=64.56 Aligned_cols=25 Identities=24% Similarity=0.477 Sum_probs=21.8
Q ss_pred CCCcEEeCCCCCcHHHHHHHHHHHh
Q 002012 290 KNNPVIIGEPGVGKTAIAEGLAQRI 314 (982)
Q Consensus 290 ~~~iLL~GppGvGKT~la~~la~~l 314 (982)
+..++|+||||+||||+++.|++.+
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3457788999999999999999876
No 297
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.58 E-value=0.0047 Score=63.49 Aligned_cols=23 Identities=35% Similarity=0.658 Sum_probs=21.4
Q ss_pred CcEEeCCCCCcHHHHHHHHHHHh
Q 002012 292 NPVIIGEPGVGKTAIAEGLAQRI 314 (982)
Q Consensus 292 ~iLL~GppGvGKT~la~~la~~l 314 (982)
+++|+|+||+||||+++.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999987
No 298
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.58 E-value=0.0056 Score=60.04 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=21.7
Q ss_pred CcEEeCCCCCcHHHHHHHHHHHh
Q 002012 292 NPVIIGEPGVGKTAIAEGLAQRI 314 (982)
Q Consensus 292 ~iLL~GppGvGKT~la~~la~~l 314 (982)
.++|+|+||+||||+++.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999988
No 299
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.57 E-value=0.005 Score=61.68 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=22.5
Q ss_pred CCcEEeCCCCCcHHHHHHHHHHHhh
Q 002012 291 NNPVIIGEPGVGKTAIAEGLAQRIV 315 (982)
Q Consensus 291 ~~iLL~GppGvGKT~la~~la~~l~ 315 (982)
..++|+|+||+||||+++.|++.+.
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4578999999999999999999883
No 300
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.56 E-value=0.0066 Score=63.37 Aligned_cols=25 Identities=36% Similarity=0.589 Sum_probs=23.0
Q ss_pred CCCcEEeCCCCCcHHHHHHHHHHHh
Q 002012 290 KNNPVIIGEPGVGKTAIAEGLAQRI 314 (982)
Q Consensus 290 ~~~iLL~GppGvGKT~la~~la~~l 314 (982)
..+++|+|+||+||||+++.|++.+
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999999998
No 301
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.56 E-value=0.046 Score=54.77 Aligned_cols=22 Identities=36% Similarity=0.540 Sum_probs=20.0
Q ss_pred EEeecCCCCchHHHHHHHHHHh
Q 002012 696 FMFMGPTGVGKTELGKALADFL 717 (982)
Q Consensus 696 lLf~Gp~GtGKT~lA~~la~~l 717 (982)
++|+||+|+|||++++.|.+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 7899999999999999998764
No 302
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.56 E-value=0.0054 Score=61.57 Aligned_cols=24 Identities=21% Similarity=0.454 Sum_probs=22.0
Q ss_pred CCcEEeCCCCCcHHHHHHHHHHHh
Q 002012 291 NNPVIIGEPGVGKTAIAEGLAQRI 314 (982)
Q Consensus 291 ~~iLL~GppGvGKT~la~~la~~l 314 (982)
..++|+|+||+||||+++.|++.+
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999999999988
No 303
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.55 E-value=0.0074 Score=61.27 Aligned_cols=28 Identities=39% Similarity=0.604 Sum_probs=24.2
Q ss_pred eEEeecCCCCchHHHHHHHHHHhcCCCCceE
Q 002012 695 SFMFMGPTGVGKTELGKALADFLFNTENALV 725 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v 725 (982)
.++|+||||+|||++++.|++.+ +.+++
T Consensus 27 ~i~l~G~~GsGKsTl~~~La~~l---~~~~i 54 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLGKAFARKL---NVPFI 54 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH---TCCEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc---CCCEE
Confidence 58999999999999999999988 44443
No 304
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=95.55 E-value=0.021 Score=59.75 Aligned_cols=105 Identities=14% Similarity=0.169 Sum_probs=55.5
Q ss_pred eEEeecCCCCchHHHHHHHHHHhcCCCCceEEE-ecccccccc--cccc--------ccCCCCCc--cccccCCchhHHH
Q 002012 695 SFMFMGPTGVGKTELGKALADFLFNTENALVRI-DMSEYMEKH--SVSR--------LVGAPPGY--VGYEEGGQLTEVV 761 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i-~~s~~~~~~--~~~~--------l~g~~~g~--vg~~~~~~l~~~l 761 (982)
.++++||+|+|||.+|..++..+ +...+.+ ...+..... .... +.|..... +-....+.+....
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~---~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g~~~~~~~i~v~T~~~l~~~~ 186 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINEL---STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKELKPLTVSTYDSAYVNA 186 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHS---CSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESSSCBCCCSEEEEEHHHHHHTH
T ss_pred CEEEEeCCCCCHHHHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeCCCCCcCCEEEEeHHHHHhhH
Confidence 38999999999999999888775 3333333 232222111 0111 11111000 0000001111111
Q ss_pred hh--CCCeEEEEccccccCHHHHHHHHHhhhcCceecCCCcEEecccEEEEEecCCC
Q 002012 762 RR--RPYSVVLFDEIEKAHQDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIG 816 (982)
Q Consensus 762 ~~--~~~~Vl~lDEidkl~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~tsn~~ 816 (982)
.. ...++|+|||++.+.......++..+. ...++.+|+++.
T Consensus 187 ~~~~~~~~llIiDEaH~l~~~~~~~i~~~~~--------------~~~~l~LSATp~ 229 (237)
T 2fz4_A 187 EKLGNRFMLLIFDEVHHLPAESYVQIAQMSI--------------APFRLGLTATFE 229 (237)
T ss_dssp HHHTTTCSEEEEECSSCCCTTTHHHHHHTCC--------------CSEEEEEEESCC
T ss_pred HHhcccCCEEEEECCccCCChHHHHHHHhcc--------------CCEEEEEecCCC
Confidence 11 346799999999998766665555543 235677787764
No 305
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.53 E-value=0.0056 Score=62.87 Aligned_cols=23 Identities=39% Similarity=0.668 Sum_probs=21.5
Q ss_pred CcEEeCCCCCcHHHHHHHHHHHh
Q 002012 292 NPVIIGEPGVGKTAIAEGLAQRI 314 (982)
Q Consensus 292 ~iLL~GppGvGKT~la~~la~~l 314 (982)
+++|+|+||+||||+++.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999988
No 306
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.51 E-value=0.0072 Score=60.55 Aligned_cols=24 Identities=25% Similarity=0.501 Sum_probs=22.0
Q ss_pred CcEEeCCCCCcHHHHHHHHHHHhh
Q 002012 292 NPVIIGEPGVGKTAIAEGLAQRIV 315 (982)
Q Consensus 292 ~iLL~GppGvGKT~la~~la~~l~ 315 (982)
.++|.|+||+||||+++.|++.+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999984
No 307
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.49 E-value=0.0055 Score=61.41 Aligned_cols=24 Identities=25% Similarity=0.531 Sum_probs=22.0
Q ss_pred CCcEEeCCCCCcHHHHHHHHHHHh
Q 002012 291 NNPVIIGEPGVGKTAIAEGLAQRI 314 (982)
Q Consensus 291 ~~iLL~GppGvGKT~la~~la~~l 314 (982)
..++|+|+||+||||+++.|++.+
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999999999988
No 308
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.49 E-value=0.0057 Score=61.08 Aligned_cols=24 Identities=38% Similarity=0.656 Sum_probs=22.0
Q ss_pred CCcEEeCCCCCcHHHHHHHHHHHh
Q 002012 291 NNPVIIGEPGVGKTAIAEGLAQRI 314 (982)
Q Consensus 291 ~~iLL~GppGvGKT~la~~la~~l 314 (982)
..++|+|+||+||||+++.|++.+
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999999988
No 309
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.48 E-value=0.043 Score=60.90 Aligned_cols=37 Identities=27% Similarity=0.444 Sum_probs=29.0
Q ss_pred HHHHHhcc-CCCCCcEEeCCCCCcHHHHHHHHHHHhhc
Q 002012 280 RCIQILSR-RTKNNPVIIGEPGVGKTAIAEGLAQRIVR 316 (982)
Q Consensus 280 ~l~~~L~~-~~~~~iLL~GppGvGKT~la~~la~~l~~ 316 (982)
++++.+.. .....++|+||+|+|||+++..|++.+..
T Consensus 163 raID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~ 200 (422)
T 3ice_A 163 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAY 200 (422)
T ss_dssp HHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHH
T ss_pred eeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhh
Confidence 45555544 45667999999999999999999988754
No 310
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.47 E-value=0.0062 Score=61.49 Aligned_cols=24 Identities=38% Similarity=0.566 Sum_probs=22.3
Q ss_pred CCcEEeCCCCCcHHHHHHHHHHHh
Q 002012 291 NNPVIIGEPGVGKTAIAEGLAQRI 314 (982)
Q Consensus 291 ~~iLL~GppGvGKT~la~~la~~l 314 (982)
..++|+|+||+||||+++.|++.+
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999998
No 311
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.46 E-value=0.009 Score=58.64 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=21.5
Q ss_pred eEEeecCCCCchHHHHHHHHHHh
Q 002012 695 SFMFMGPTGVGKTELGKALADFL 717 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l 717 (982)
.++|.||||+|||++++.|++.+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 38899999999999999999987
No 312
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.39 E-value=0.024 Score=61.34 Aligned_cols=83 Identities=18% Similarity=0.224 Sum_probs=49.1
Q ss_pred eEEeecCCCCchHHHHHHHHHHhcCC--CCceEEEeccccccccccccccCCCCCcc--cc-ccCCch-h---HH---Hh
Q 002012 695 SFMFMGPTGVGKTELGKALADFLFNT--ENALVRIDMSEYMEKHSVSRLVGAPPGYV--GY-EEGGQL-T---EV---VR 762 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~~~--~~~~v~i~~s~~~~~~~~~~l~g~~~g~v--g~-~~~~~l-~---~~---l~ 762 (982)
.++++||||+|||+++..++...... +..++.+|..+-.... ..+-+|.....+ .. ....++ . +. ++
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l~~i~ 108 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-YLRSMGVDPERVIHTPVQSLEQLRIDMVNQLDAIE 108 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-HHHHTTCCGGGEEEEECSBHHHHHHHHHHHHHTCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-HHHHhCCCHHHeEEEcCCCHHHHHHHHHHHHHHhh
Confidence 38999999999999988887766432 5678888876643221 112223221111 00 011122 2 22 34
Q ss_pred hCCCeEEEEccccccC
Q 002012 763 RRPYSVVLFDEIEKAH 778 (982)
Q Consensus 763 ~~~~~Vl~lDEidkl~ 778 (982)
.....+|++|-|..+.
T Consensus 109 ~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 109 RGEKVVVFIDSLGNLA 124 (333)
T ss_dssp TTCCEEEEEECSTTCB
T ss_pred ccCceEEEEecccccc
Confidence 5567899999998874
No 313
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.37 E-value=0.0063 Score=63.15 Aligned_cols=25 Identities=28% Similarity=0.573 Sum_probs=22.6
Q ss_pred CCCcEEeCCCCCcHHHHHHHHHHHh
Q 002012 290 KNNPVIIGEPGVGKTAIAEGLAQRI 314 (982)
Q Consensus 290 ~~~iLL~GppGvGKT~la~~la~~l 314 (982)
...++|+|+||+||||+++.|++.+
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3468899999999999999999987
No 314
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.36 E-value=0.027 Score=59.84 Aligned_cols=38 Identities=29% Similarity=0.456 Sum_probs=28.4
Q ss_pred CCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEeccc
Q 002012 291 NNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMAS 335 (982)
Q Consensus 291 ~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~ 335 (982)
..++|+|+||+||||+++.|++.+... +..++.++...
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~-------g~~~i~~~~D~ 42 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKN-------NIDVIVLGSDL 42 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHT-------TCCEEEECTHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhC-------CCEEEEECchH
Confidence 357889999999999999999986432 55566455433
No 315
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.35 E-value=0.0069 Score=62.45 Aligned_cols=24 Identities=33% Similarity=0.588 Sum_probs=22.4
Q ss_pred CCcEEeCCCCCcHHHHHHHHHHHh
Q 002012 291 NNPVIIGEPGVGKTAIAEGLAQRI 314 (982)
Q Consensus 291 ~~iLL~GppGvGKT~la~~la~~l 314 (982)
..++|+|+||+||||+++.|++.+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999998
No 316
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.35 E-value=0.0091 Score=58.62 Aligned_cols=34 Identities=24% Similarity=0.392 Sum_probs=27.1
Q ss_pred ceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEecccc
Q 002012 694 ASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEY 732 (982)
Q Consensus 694 ~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~ 732 (982)
.+++|.|++|+|||++|+.|++.+ +.++ +|+..+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l---g~~~--id~D~~ 41 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL---KLEV--LDTDMI 41 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH---TCCE--EEHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh---CCCE--EEChHH
Confidence 369999999999999999999987 5555 444443
No 317
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.33 E-value=0.011 Score=62.04 Aligned_cols=26 Identities=23% Similarity=0.433 Sum_probs=23.2
Q ss_pred CCCCcEEeCCCCCcHHHHHHHHHHHh
Q 002012 289 TKNNPVIIGEPGVGKTAIAEGLAQRI 314 (982)
Q Consensus 289 ~~~~iLL~GppGvGKT~la~~la~~l 314 (982)
.+..++|+||||+||||+|+.|++.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 34568899999999999999999988
No 318
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.32 E-value=0.0096 Score=59.59 Aligned_cols=38 Identities=21% Similarity=0.252 Sum_probs=29.2
Q ss_pred eEEeecCCCCchHHHHHHHHHHhcCCCCceEEEecccc
Q 002012 695 SFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEY 732 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~ 732 (982)
.++|.|+||+|||++|+.|++.+-..+..+..++++++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~ 40 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDF 40 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChH
Confidence 38899999999999999999988433445666655443
No 319
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.32 E-value=0.041 Score=58.92 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=21.3
Q ss_pred eEEeecCCCCchHHHHHHHHHHhc
Q 002012 695 SFMFMGPTGVGKTELGKALADFLF 718 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~ 718 (982)
.++++||+|+|||+++..++..+.
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHh
Confidence 388999999999999999998663
No 320
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.32 E-value=0.0062 Score=62.97 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=23.0
Q ss_pred CCCcEEeCCCCCcHHHHHHHHHHHh
Q 002012 290 KNNPVIIGEPGVGKTAIAEGLAQRI 314 (982)
Q Consensus 290 ~~~iLL~GppGvGKT~la~~la~~l 314 (982)
+..++|.|+||+||||+++.|++.+
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999999998
No 321
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.32 E-value=0.056 Score=55.75 Aligned_cols=90 Identities=10% Similarity=-0.017 Sum_probs=48.1
Q ss_pred EEeecCCCCchHHHHHHHHHHhcCCCCceEEEecc---ccccccccccccCCCCCccccccCCchhHHHhhCCCeEEEEc
Q 002012 696 FMFMGPTGVGKTELGKALADFLFNTENALVRIDMS---EYMEKHSVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFD 772 (982)
Q Consensus 696 lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s---~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~~~~~Vl~lD 772 (982)
.+++||.|+|||+.+-..+......+..++.+... .+. ....++ +|......+......+.+.+ .+..+|+||
T Consensus 22 ~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~Ryg-~~i~sr-~G~~~~a~~i~~~~di~~~~--~~~dvViID 97 (234)
T 2orv_A 22 QVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYS-SSFCTH-DRNTMEALPACLLRDVAQEA--LGVAVIGID 97 (234)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCCC-------------CEEEEESSGGGGHHHH--TTCSEEEES
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCccch-HHHHhh-cCCeeEEEecCCHHHHHHHh--ccCCEEEEE
Confidence 56789999999977766666554556655555421 111 111111 12221111111112344444 346799999
Q ss_pred cccccCHHHHHHHHHhhhc
Q 002012 773 EIEKAHQDVFNILLQLLDD 791 (982)
Q Consensus 773 Eidkl~~~~~~~Ll~~le~ 791 (982)
|+.-+.. ...+..++++
T Consensus 98 EaQF~~~--v~el~~~l~~ 114 (234)
T 2orv_A 98 EGQFFPD--IVEFCEAMAN 114 (234)
T ss_dssp SGGGCTT--HHHHHHHHHH
T ss_pred chhhhhh--HHHHHHHHHh
Confidence 9999974 5566666654
No 322
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.31 E-value=0.023 Score=58.57 Aligned_cols=37 Identities=27% Similarity=0.360 Sum_probs=27.5
Q ss_pred eEEeecCCCCchHHHHHHHHHHhcC------CCCceEEEeccc
Q 002012 695 SFMFMGPTGVGKTELGKALADFLFN------TENALVRIDMSE 731 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~~------~~~~~v~i~~s~ 731 (982)
.+.|+||+|+|||++++.|+..+.. .+...+.++...
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~ 69 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 69 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence 4889999999999999999986522 133466666544
No 323
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.31 E-value=0.044 Score=58.72 Aligned_cols=29 Identities=28% Similarity=0.422 Sum_probs=24.1
Q ss_pred CCCCcEEeCCCCCcHHHHHHHHHHHhhcC
Q 002012 289 TKNNPVIIGEPGVGKTAIAEGLAQRIVRG 317 (982)
Q Consensus 289 ~~~~iLL~GppGvGKT~la~~la~~l~~~ 317 (982)
...-++|+||+|+||||++..++..+..+
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~~g 57 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQIAGG 57 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHTC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHhcC
Confidence 34467889999999999999999877654
No 324
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.29 E-value=0.0088 Score=59.13 Aligned_cols=24 Identities=33% Similarity=0.598 Sum_probs=21.8
Q ss_pred CCcEEeCCCCCcHHHHHHHHHHHh
Q 002012 291 NNPVIIGEPGVGKTAIAEGLAQRI 314 (982)
Q Consensus 291 ~~iLL~GppGvGKT~la~~la~~l 314 (982)
..++|+|++|+||||+++.|+..+
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhh
Confidence 457899999999999999999887
No 325
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.28 E-value=0.012 Score=59.69 Aligned_cols=27 Identities=37% Similarity=0.633 Sum_probs=23.2
Q ss_pred CCCCCcEEeCCCCCcHHHHHHHHHHHh
Q 002012 288 RTKNNPVIIGEPGVGKTAIAEGLAQRI 314 (982)
Q Consensus 288 ~~~~~iLL~GppGvGKT~la~~la~~l 314 (982)
..+..++|+||+|+||||+++.|+..+
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 345578899999999999999999987
No 326
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.28 E-value=0.029 Score=64.14 Aligned_cols=26 Identities=31% Similarity=0.491 Sum_probs=22.4
Q ss_pred CCCcEEeCCCCCcHHHHHHHHHHHhh
Q 002012 290 KNNPVIIGEPGVGKTAIAEGLAQRIV 315 (982)
Q Consensus 290 ~~~iLL~GppGvGKT~la~~la~~l~ 315 (982)
...++|+|++|||||+|+..++..+.
T Consensus 151 Gq~~~i~G~sGvGKTtL~~~l~~~~~ 176 (473)
T 1sky_E 151 GGKIGLFGGAGVGKTVLIQELIHNIA 176 (473)
T ss_dssp TCEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCccHHHHHHHhhhh
Confidence 44689999999999999999987764
No 327
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.27 E-value=0.018 Score=66.52 Aligned_cols=26 Identities=35% Similarity=0.533 Sum_probs=22.1
Q ss_pred CCCcEEeCCCCCcHHHHHHHHHHHhh
Q 002012 290 KNNPVIIGEPGVGKTAIAEGLAQRIV 315 (982)
Q Consensus 290 ~~~iLL~GppGvGKT~la~~la~~l~ 315 (982)
+.-++|.|+||+|||+++..++..+.
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~ 228 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVA 228 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34577889999999999999998774
No 328
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.27 E-value=0.16 Score=57.80 Aligned_cols=37 Identities=24% Similarity=0.181 Sum_probs=28.1
Q ss_pred CCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEec
Q 002012 290 KNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDM 333 (982)
Q Consensus 290 ~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~ 333 (982)
+.-++++|++|+||||++..||..+... +.++.-+++
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~-------G~kVllv~~ 133 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKR-------GYKVGLVAA 133 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHT-------TCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc-------CCeEEEEec
Confidence 3456788999999999999999988553 555555553
No 329
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.24 E-value=0.0089 Score=59.18 Aligned_cols=33 Identities=33% Similarity=0.479 Sum_probs=26.0
Q ss_pred eEEeecCCCCchHHHHHHHHHHhcCCCCceEEEecccc
Q 002012 695 SFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEY 732 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~ 732 (982)
.++|.||||+|||++|+.||+.+ +.+ .+|...+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l---~~~--~~d~d~~ 38 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL---DLV--FLDSDFL 38 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH---TCE--EEEHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc---CCC--EEcccHH
Confidence 38899999999999999999987 433 3454443
No 330
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.24 E-value=0.0074 Score=61.28 Aligned_cols=24 Identities=29% Similarity=0.517 Sum_probs=21.8
Q ss_pred CCcEEeCCCCCcHHHHHHHHHHHh
Q 002012 291 NNPVIIGEPGVGKTAIAEGLAQRI 314 (982)
Q Consensus 291 ~~iLL~GppGvGKT~la~~la~~l 314 (982)
..++|+|+||+||||+++.|++.+
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 457889999999999999999987
No 331
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.23 E-value=0.0053 Score=60.79 Aligned_cols=21 Identities=33% Similarity=0.472 Sum_probs=19.5
Q ss_pred CcEEeCCCCCcHHHHHHHHHH
Q 002012 292 NPVIIGEPGVGKTAIAEGLAQ 312 (982)
Q Consensus 292 ~iLL~GppGvGKT~la~~la~ 312 (982)
.++|+|+||+||||+++.|++
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 478899999999999999998
No 332
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.20 E-value=0.012 Score=60.07 Aligned_cols=23 Identities=39% Similarity=0.561 Sum_probs=21.4
Q ss_pred CcEEeCCCCCcHHHHHHHHHHHh
Q 002012 292 NPVIIGEPGVGKTAIAEGLAQRI 314 (982)
Q Consensus 292 ~iLL~GppGvGKT~la~~la~~l 314 (982)
.++|.||||+||+|.|+.|++.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47889999999999999999988
No 333
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=95.18 E-value=0.056 Score=56.80 Aligned_cols=25 Identities=20% Similarity=0.530 Sum_probs=21.0
Q ss_pred CCCCcEEeCCCCCcHHHHHHHHHHH
Q 002012 289 TKNNPVIIGEPGVGKTAIAEGLAQR 313 (982)
Q Consensus 289 ~~~~iLL~GppGvGKT~la~~la~~ 313 (982)
...+++|+|.||+||||++..|...
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTS
T ss_pred CceEEEEECCCCCcHHHHHHHHhCC
Confidence 3457999999999999999988643
No 334
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.18 E-value=0.02 Score=63.07 Aligned_cols=91 Identities=18% Similarity=0.281 Sum_probs=48.7
Q ss_pred eEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccccccccCCCCCccccccCCchhHHHhhCCCeEEEEccc
Q 002012 695 SFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEI 774 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~~~~~Vl~lDEi 774 (982)
.++++||+|+|||++.++|+..+.. ....+.++.............++--.+ .|......+..++. ..+.+|++||.
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~~~-~~g~i~i~~~~e~~~~~~~~~i~~~~g-gg~~~r~~la~aL~-~~p~ilildE~ 249 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFIPK-EERIISIEDTEEIVFKHHKNYTQLFFG-GNITSADCLKSCLR-MRPDRIILGEL 249 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGSCT-TSCEEEEESSCCCCCSSCSSEEEEECB-TTBCHHHHHHHHTT-SCCSEEEECCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcC-CCcEEEECCeeccccccchhEEEEEeC-CChhHHHHHHHHhh-hCCCEEEEcCC
Confidence 3899999999999999999988743 344566664321110001111100000 11111112333333 34579999998
Q ss_pred cccCHHHHHHHHHhhhc
Q 002012 775 EKAHQDVFNILLQLLDD 791 (982)
Q Consensus 775 dkl~~~~~~~Ll~~le~ 791 (982)
-. .++.+. ++.+..
T Consensus 250 ~~--~e~~~~-l~~~~~ 263 (330)
T 2pt7_A 250 RS--SEAYDF-YNVLCS 263 (330)
T ss_dssp CS--THHHHH-HHHHHT
T ss_pred Ch--HHHHHH-HHHHhc
Confidence 76 345554 444444
No 335
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.14 E-value=0.008 Score=61.77 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=21.6
Q ss_pred CcEEeCCCCCcHHHHHHHHHHHh
Q 002012 292 NPVIIGEPGVGKTAIAEGLAQRI 314 (982)
Q Consensus 292 ~iLL~GppGvGKT~la~~la~~l 314 (982)
+++|.|+||+||||+++.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999988
No 336
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.10 E-value=0.0082 Score=59.70 Aligned_cols=25 Identities=40% Similarity=0.397 Sum_probs=18.4
Q ss_pred CCCcEEeCCCCCcHHHHHHHHHHHh
Q 002012 290 KNNPVIIGEPGVGKTAIAEGLAQRI 314 (982)
Q Consensus 290 ~~~iLL~GppGvGKT~la~~la~~l 314 (982)
+..++|+|+||+||||+++.|++.+
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3467889999999999999999987
No 337
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.08 E-value=0.011 Score=58.81 Aligned_cols=32 Identities=31% Similarity=0.511 Sum_probs=25.9
Q ss_pred EEeecCCCCchHHHHHHHHHHhcCCCCceEEEecccc
Q 002012 696 FMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEY 732 (982)
Q Consensus 696 lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~ 732 (982)
++|.|+||+|||++|+.|++.+ +.++ +|+..+
T Consensus 5 I~l~G~~GsGKsT~a~~La~~l---g~~~--id~D~~ 36 (184)
T 2iyv_A 5 AVLVGLPGSGKSTIGRRLAKAL---GVGL--LDTDVA 36 (184)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH---TCCE--EEHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHc---CCCE--EeCchH
Confidence 8899999999999999999987 4444 454443
No 338
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.07 E-value=0.012 Score=59.70 Aligned_cols=26 Identities=31% Similarity=0.571 Sum_probs=22.4
Q ss_pred CCCCcEEeCCCCCcHHHHHHHHHHHh
Q 002012 289 TKNNPVIIGEPGVGKTAIAEGLAQRI 314 (982)
Q Consensus 289 ~~~~iLL~GppGvGKT~la~~la~~l 314 (982)
.+.-++|+||+|+|||||++.|++..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 44457889999999999999999875
No 339
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.06 E-value=0.011 Score=58.77 Aligned_cols=23 Identities=48% Similarity=0.730 Sum_probs=21.7
Q ss_pred eEEeecCCCCchHHHHHHHHHHh
Q 002012 695 SFMFMGPTGVGKTELGKALADFL 717 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l 717 (982)
.++|.|+||+|||++++.|++.+
T Consensus 13 ~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 13 NILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999987
No 340
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.04 E-value=0.014 Score=61.87 Aligned_cols=30 Identities=30% Similarity=0.469 Sum_probs=25.0
Q ss_pred EEeecCCCCchHHHHHHHHHHhcCCCCceEEEe
Q 002012 696 FMFMGPTGVGKTELGKALADFLFNTENALVRID 728 (982)
Q Consensus 696 lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~ 728 (982)
+++.||||+|||++|+.||+.+ +..++..|
T Consensus 4 i~I~G~~GSGKSTla~~La~~~---~~~~i~~D 33 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAIQIAQET---GWPVVALD 33 (253)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH---CCCEEECC
T ss_pred EEEECCCCcCHHHHHHHHHhcC---CCeEEecc
Confidence 7899999999999999999987 45555444
No 341
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.02 E-value=0.012 Score=58.94 Aligned_cols=23 Identities=39% Similarity=0.475 Sum_probs=21.6
Q ss_pred eEEeecCCCCchHHHHHHHHHHh
Q 002012 695 SFMFMGPTGVGKTELGKALADFL 717 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l 717 (982)
.++|.|+||+|||++++.|++.+
T Consensus 7 ~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 7 LIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48899999999999999999987
No 342
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.01 E-value=0.0077 Score=60.41 Aligned_cols=25 Identities=44% Similarity=0.605 Sum_probs=21.2
Q ss_pred CCCcEEeCCCCCcHHHHHHHHHHHh
Q 002012 290 KNNPVIIGEPGVGKTAIAEGLAQRI 314 (982)
Q Consensus 290 ~~~iLL~GppGvGKT~la~~la~~l 314 (982)
+..++|+||||+||||+++.|+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcc
Confidence 3457899999999999999998753
No 343
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.98 E-value=0.014 Score=58.33 Aligned_cols=37 Identities=19% Similarity=0.210 Sum_probs=27.2
Q ss_pred eEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccc
Q 002012 695 SFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSE 731 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~ 731 (982)
.++|.|+||+|||++++.|++.+-..+.++..++.++
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~ 41 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGS 41 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHH
Confidence 3899999999999999999998732222244455444
No 344
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=94.98 E-value=0.069 Score=63.95 Aligned_cols=27 Identities=33% Similarity=0.580 Sum_probs=22.8
Q ss_pred CCCcEEeCCCCCcHHHHHHHHHHHhhc
Q 002012 290 KNNPVIIGEPGVGKTAIAEGLAQRIVR 316 (982)
Q Consensus 290 ~~~iLL~GppGvGKT~la~~la~~l~~ 316 (982)
...+++.|+||||||+++..+...+..
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l~~ 190 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAALIQ 190 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 457889999999999999988877753
No 345
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.97 E-value=0.014 Score=61.68 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=23.4
Q ss_pred CCCcEEeCCCCCcHHHHHHHHHHHh
Q 002012 290 KNNPVIIGEPGVGKTAIAEGLAQRI 314 (982)
Q Consensus 290 ~~~iLL~GppGvGKT~la~~la~~l 314 (982)
...++|+|++|+||||+++.|++.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 4589999999999999999999998
No 346
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.95 E-value=0.017 Score=57.68 Aligned_cols=37 Identities=32% Similarity=0.392 Sum_probs=28.2
Q ss_pred CCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEe
Q 002012 289 TKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLD 332 (982)
Q Consensus 289 ~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~ 332 (982)
.+..++|+|+||+||||+++.|+..+... +..+..++
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~-------~~~~~~~~ 48 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKE-------GYRVEVLD 48 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHT-------TCCEEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc-------CCeEEEee
Confidence 34457889999999999999999998432 44555555
No 347
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.95 E-value=0.019 Score=56.69 Aligned_cols=34 Identities=24% Similarity=0.381 Sum_probs=26.8
Q ss_pred ceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEecccc
Q 002012 694 ASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEY 732 (982)
Q Consensus 694 ~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~ 732 (982)
..+.|+||+|+|||++++.|+..+ + .+.++...+
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~---g--~~~i~~d~~ 42 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQL---H--AAFLDGDFL 42 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH---T--CEEEEGGGG
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhh---C--cEEEeCccc
Confidence 358899999999999999999876 3 345665544
No 348
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.94 E-value=0.094 Score=60.33 Aligned_cols=32 Identities=25% Similarity=0.321 Sum_probs=25.4
Q ss_pred ceEEeecCCCCchHHHHHHHHHHhcCCCCceE
Q 002012 694 ASFMFMGPTGVGKTELGKALADFLFNTENALV 725 (982)
Q Consensus 694 ~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v 725 (982)
..++|+||+|+|||++++.|+..+...+..+.
T Consensus 294 eVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~ 325 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGKLARQFEQQGKSVM 325 (503)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred eEEEEECCCcccHHHHHHHHHHHhhhcCCeEE
Confidence 35889999999999999999998754344443
No 349
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.88 E-value=0.016 Score=63.80 Aligned_cols=28 Identities=39% Similarity=0.642 Sum_probs=24.4
Q ss_pred cCCCCCcEEeCCCCCcHHHHHHHHHHHh
Q 002012 287 RRTKNNPVIIGEPGVGKTAIAEGLAQRI 314 (982)
Q Consensus 287 ~~~~~~iLL~GppGvGKT~la~~la~~l 314 (982)
.+...+++|+|+||+||||+++.|+..+
T Consensus 21 ~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 21 DNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp TCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 3445579999999999999999999987
No 350
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.87 E-value=0.015 Score=59.96 Aligned_cols=23 Identities=26% Similarity=0.586 Sum_probs=21.8
Q ss_pred eEEeecCCCCchHHHHHHHHHHh
Q 002012 695 SFMFMGPTGVGKTELGKALADFL 717 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l 717 (982)
.++|.|+||+|||++|+.|++.+
T Consensus 6 ~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 6 RMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999987
No 351
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.85 E-value=0.013 Score=60.57 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=21.5
Q ss_pred CcEEeCCCCCcHHHHHHHHHHHh
Q 002012 292 NPVIIGEPGVGKTAIAEGLAQRI 314 (982)
Q Consensus 292 ~iLL~GppGvGKT~la~~la~~l 314 (982)
.++|.|+||+||||+++.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999988
No 352
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.85 E-value=0.076 Score=60.62 Aligned_cols=43 Identities=26% Similarity=0.409 Sum_probs=34.7
Q ss_pred CCCceEEeecCCCCchHHHHHHHHHHhcCC-CCceEEEeccccc
Q 002012 691 RPIASFMFMGPTGVGKTELGKALADFLFNT-ENALVRIDMSEYM 733 (982)
Q Consensus 691 ~p~~~lLf~Gp~GtGKT~lA~~la~~l~~~-~~~~v~i~~s~~~ 733 (982)
.+...++|+|++|+|||+++-.||..+... +..+..+|+..+.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r 141 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYR 141 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 334468899999999999999999988665 7778888887653
No 353
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.84 E-value=0.027 Score=63.06 Aligned_cols=93 Identities=22% Similarity=0.187 Sum_probs=51.9
Q ss_pred CcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEeccccc----ccccccccHHHHHHHHHHHHHhcCCCeEEE
Q 002012 292 NPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLV----AGTCYRGDFEKRLKAVLKEVTKSNGQIILF 367 (982)
Q Consensus 292 ~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~----~~~~~~g~~e~~l~~l~~~~~~~~~~~IL~ 367 (982)
-++|.||+|+|||+|+..||+.+ +..+++.|.-.+- -++..... .+.. +-+ --|
T Consensus 4 ~i~i~GptgsGKttla~~La~~~----------~~~iis~Ds~QvYr~l~i~T~kp~~---------~E~~--gv~-hhl 61 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQKF----------NGEVINSDSMQVYKDIPIITNKHPL---------QERE--GIP-HHV 61 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHH----------TEEEEECCTTTTBSSCTTTTTCCCG---------GGTT--TCC-EES
T ss_pred EEEEECcchhhHHHHHHHHHHHC----------CCeEeecCccceecccccccCCCCH---------HHHc--Cch-hhc
Confidence 46788999999999999999998 5566655421111 11100000 0111 112 466
Q ss_pred EccchhhhhCCCCC--chhhHHHHHHhhhcCCCeEEEEecCch
Q 002012 368 IDELHTIIGAGNQS--GAMDASNMLKPMLGRGELRCIGATTLN 408 (982)
Q Consensus 368 IDEi~~l~~~~~~~--~~~~~~~~L~~~le~g~i~vI~at~~~ 408 (982)
||.++-- ..-+. ....+...+..+.++|.+.+|.-+|.-
T Consensus 62 id~~~~~--~~~s~~~F~~~a~~~i~~i~~~g~~pilVGGTgl 102 (409)
T 3eph_A 62 MNHVDWS--EEYYSHRFETECMNAIEDIHRRGKIPIVVGGTHY 102 (409)
T ss_dssp CSCBCTT--SCCCHHHHHHHHHHHHHHHHTTTCEEEEECSCGG
T ss_pred CCccChH--hHhhHHHHHHHHHHHHHHHHhcCCCEEEECChHH
Confidence 7766521 11111 224566677777788888766555543
No 354
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.83 E-value=0.059 Score=61.97 Aligned_cols=26 Identities=35% Similarity=0.429 Sum_probs=21.9
Q ss_pred CCcEEeCCCCCcHHHHHHHHHHHhhc
Q 002012 291 NNPVIIGEPGVGKTAIAEGLAQRIVR 316 (982)
Q Consensus 291 ~~iLL~GppGvGKT~la~~la~~l~~ 316 (982)
.-++|.|+||+|||+++..+|..+..
T Consensus 201 ~l~ii~G~pg~GKT~lal~ia~~~a~ 226 (444)
T 2q6t_A 201 SLNIIAARPAMGKTAFALTIAQNAAL 226 (444)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 34678899999999999999987753
No 355
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.80 E-value=0.014 Score=57.46 Aligned_cols=23 Identities=39% Similarity=0.858 Sum_probs=21.5
Q ss_pred eEEeecCCCCchHHHHHHHHHHh
Q 002012 695 SFMFMGPTGVGKTELGKALADFL 717 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l 717 (982)
.+.|.||+|+|||++++.|+..+
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 38899999999999999999987
No 356
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.79 E-value=0.018 Score=58.22 Aligned_cols=23 Identities=26% Similarity=0.606 Sum_probs=21.6
Q ss_pred CcEEeCCCCCcHHHHHHHHHHHh
Q 002012 292 NPVIIGEPGVGKTAIAEGLAQRI 314 (982)
Q Consensus 292 ~iLL~GppGvGKT~la~~la~~l 314 (982)
.++|.|++|+||||+++.|++.+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 47899999999999999999998
No 357
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.79 E-value=0.092 Score=56.78 Aligned_cols=27 Identities=30% Similarity=0.384 Sum_probs=23.5
Q ss_pred CCCCcEEeCCCCCcHHHHHHHHHHHhh
Q 002012 289 TKNNPVIIGEPGVGKTAIAEGLAQRIV 315 (982)
Q Consensus 289 ~~~~iLL~GppGvGKT~la~~la~~l~ 315 (982)
.+..++|+||+|+||||++..||..+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345678899999999999999999885
No 358
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.78 E-value=0.096 Score=57.21 Aligned_cols=27 Identities=33% Similarity=0.434 Sum_probs=21.9
Q ss_pred CCCcEEeCCCCCcHHHHHHHHHHHhhc
Q 002012 290 KNNPVIIGEPGVGKTAIAEGLAQRIVR 316 (982)
Q Consensus 290 ~~~iLL~GppGvGKT~la~~la~~l~~ 316 (982)
..-++|.|+||+|||+++..+|..+..
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~ 94 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSD 94 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 334677899999999999999877643
No 359
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.78 E-value=0.016 Score=57.94 Aligned_cols=35 Identities=20% Similarity=0.438 Sum_probs=27.5
Q ss_pred eEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccc
Q 002012 695 SFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYM 733 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~ 733 (982)
.++|+|+||+|||++++.|++.++ + +..+|+.++.
T Consensus 12 ~I~l~G~~GsGKSTv~~~La~~l~--g--~~~id~d~~~ 46 (184)
T 1y63_A 12 NILITGTPGTGKTSMAEMIAAELD--G--FQHLEVGKLV 46 (184)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHST--T--EEEEEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC--C--CEEeeHHHHH
Confidence 499999999999999999999832 2 4456666554
No 360
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.78 E-value=0.015 Score=59.85 Aligned_cols=23 Identities=35% Similarity=0.596 Sum_probs=20.7
Q ss_pred CcEEeCCCCCcHHHHHHHHHHHh
Q 002012 292 NPVIIGEPGVGKTAIAEGLAQRI 314 (982)
Q Consensus 292 ~iLL~GppGvGKT~la~~la~~l 314 (982)
-++|+||||+||+|.|+.|++.+
T Consensus 31 iI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 45678999999999999999988
No 361
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.77 E-value=0.015 Score=57.20 Aligned_cols=22 Identities=36% Similarity=0.691 Sum_probs=21.2
Q ss_pred EEeecCCCCchHHHHHHHHHHh
Q 002012 696 FMFMGPTGVGKTELGKALADFL 717 (982)
Q Consensus 696 lLf~Gp~GtGKT~lA~~la~~l 717 (982)
++|.|+||+|||++|+.|++.+
T Consensus 5 I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 5 IFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8899999999999999999987
No 362
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.77 E-value=0.013 Score=59.44 Aligned_cols=28 Identities=25% Similarity=0.294 Sum_probs=24.0
Q ss_pred CCCCCcEEeCCCCCcHHHHHHHHHHHhh
Q 002012 288 RTKNNPVIIGEPGVGKTAIAEGLAQRIV 315 (982)
Q Consensus 288 ~~~~~iLL~GppGvGKT~la~~la~~l~ 315 (982)
..+..+.|+||+|+||||+++.|+..+.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3455678899999999999999999884
No 363
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.76 E-value=0.015 Score=58.17 Aligned_cols=35 Identities=23% Similarity=0.416 Sum_probs=27.9
Q ss_pred eEEeecCCCCchHHHHHHHHHHhcCCCCceEEEecccc
Q 002012 695 SFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEY 732 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~ 732 (982)
.+.|.||+|+|||++++.|+..+ +...+.++..++
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~~---~~g~i~i~~d~~ 45 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANLP---GVPKVHFHSDDL 45 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTCS---SSCEEEECTTHH
T ss_pred EEEEECCCCCCHHHHHHHHHhcc---CCCeEEEcccch
Confidence 48899999999999999999863 345667776554
No 364
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.75 E-value=0.014 Score=57.97 Aligned_cols=28 Identities=36% Similarity=0.539 Sum_probs=19.9
Q ss_pred eEEeecCCCCchHHHHHHHHHHhcCCCCceE
Q 002012 695 SFMFMGPTGVGKTELGKALADFLFNTENALV 725 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v 725 (982)
.++|.|+||+|||++|+.|++.+ +.+++
T Consensus 7 ~I~l~G~~GsGKST~a~~La~~l---~~~~i 34 (183)
T 2vli_A 7 IIWINGPFGVGKTHTAHTLHERL---PGSFV 34 (183)
T ss_dssp EEEEECCC----CHHHHHHHHHS---TTCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhc---CCCEE
Confidence 48899999999999999999987 44544
No 365
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.75 E-value=0.015 Score=59.15 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=22.2
Q ss_pred CCCcEEeCCCCCcHHHHHHHHHHHh
Q 002012 290 KNNPVIIGEPGVGKTAIAEGLAQRI 314 (982)
Q Consensus 290 ~~~iLL~GppGvGKT~la~~la~~l 314 (982)
+..++|+||||+||||+++.|+..+
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4467899999999999999999876
No 366
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.74 E-value=0.022 Score=56.93 Aligned_cols=34 Identities=21% Similarity=0.112 Sum_probs=27.0
Q ss_pred CcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEe
Q 002012 292 NPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLD 332 (982)
Q Consensus 292 ~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~ 332 (982)
.++|+|+||+||||+++.|++.+... +..++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~-------g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQK-------GYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHT-------TCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-------CCeEEEEe
Confidence 36899999999999999999987432 55666654
No 367
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=94.73 E-value=0.2 Score=50.37 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=18.2
Q ss_pred CCcEEeCCCCCcHHHHHHH-HHHHh
Q 002012 291 NNPVIIGEPGVGKTAIAEG-LAQRI 314 (982)
Q Consensus 291 ~~iLL~GppGvGKT~la~~-la~~l 314 (982)
.++++.+|+|+|||..+-. +...+
T Consensus 39 ~~~li~~~TGsGKT~~~~~~~~~~l 63 (207)
T 2gxq_A 39 KDLIGQARTGTGKTLAFALPIAERL 63 (207)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHC
T ss_pred CCEEEECCCCChHHHHHHHHHHHHH
Confidence 5899999999999987543 44444
No 368
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.71 E-value=0.024 Score=57.40 Aligned_cols=38 Identities=24% Similarity=0.347 Sum_probs=28.6
Q ss_pred eEEeecCCCCchHHHHHHHHHHhcCCCCceEEEecccc
Q 002012 695 SFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEY 732 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~ 732 (982)
.+.|.||+|+|||++++.|+..+...+...+.+|...+
T Consensus 27 ~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 27 VIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 48899999999999999999988533333345665443
No 369
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.68 E-value=0.031 Score=61.53 Aligned_cols=26 Identities=27% Similarity=0.454 Sum_probs=22.9
Q ss_pred CCCCcEEeCCCCCcHHHHHHHHHHHh
Q 002012 289 TKNNPVIIGEPGVGKTAIAEGLAQRI 314 (982)
Q Consensus 289 ~~~~iLL~GppGvGKT~la~~la~~l 314 (982)
.+..++|+||+|+||||+.+.|+..+
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999999876
No 370
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.64 E-value=0.015 Score=56.93 Aligned_cols=31 Identities=32% Similarity=0.405 Sum_probs=23.6
Q ss_pred EEeecCCCCchHHHHHHHHHHhcCCCCceEEEecccc
Q 002012 696 FMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEY 732 (982)
Q Consensus 696 lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~ 732 (982)
++|.||||+|||++|+.| +.+ +.+ .++++++
T Consensus 4 I~l~G~~GsGKsT~a~~L-~~~---g~~--~i~~~~~ 34 (179)
T 3lw7_A 4 ILITGMPGSGKSEFAKLL-KER---GAK--VIVMSDV 34 (179)
T ss_dssp EEEECCTTSCHHHHHHHH-HHT---TCE--EEEHHHH
T ss_pred EEEECCCCCCHHHHHHHH-HHC---CCc--EEEHhHH
Confidence 889999999999999999 654 334 4454443
No 371
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.63 E-value=0.019 Score=58.23 Aligned_cols=33 Identities=30% Similarity=0.458 Sum_probs=26.2
Q ss_pred eEEeecCCCCchHHHHHHHHHHhcCCCCceEEEecccc
Q 002012 695 SFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEY 732 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~ 732 (982)
.++|.|++|+|||++|+.|++.+ +. ..++...+
T Consensus 20 ~I~l~G~~GsGKSTla~~L~~~l---g~--~~i~~d~~ 52 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVGEAIAEAC---GY--PFIEGDAL 52 (202)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHH---TC--CEEEGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CC--EEEeCCcC
Confidence 38999999999999999999987 33 34555444
No 372
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.62 E-value=0.019 Score=57.67 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=21.6
Q ss_pred eEEeecCCCCchHHHHHHHHHHh
Q 002012 695 SFMFMGPTGVGKTELGKALADFL 717 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l 717 (982)
.++|.|+||+|||++|+.|++.+
T Consensus 11 ~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 11 IIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999987
No 373
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.61 E-value=0.017 Score=57.93 Aligned_cols=33 Identities=15% Similarity=0.271 Sum_probs=26.0
Q ss_pred eEEeecCCCCchHHHHHHHHHHhcCCCCceEEEecccc
Q 002012 695 SFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEY 732 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~ 732 (982)
.++|.|+||+|||++|+.|++.+ +. ..++..++
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~~~~---~~--~~i~~d~~ 37 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIVEKY---GY--THLSAGEL 37 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH---CC--EEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CC--eEEeHHHH
Confidence 38899999999999999999987 33 34555444
No 374
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.61 E-value=0.019 Score=56.09 Aligned_cols=23 Identities=26% Similarity=0.418 Sum_probs=21.5
Q ss_pred eEEeecCCCCchHHHHHHHHHHh
Q 002012 695 SFMFMGPTGVGKTELGKALADFL 717 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l 717 (982)
.++|.|+||+|||++|+.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 38899999999999999999987
No 375
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=94.59 E-value=0.16 Score=51.49 Aligned_cols=28 Identities=21% Similarity=0.189 Sum_probs=24.4
Q ss_pred eEEeecCCCCchHHHHHHHHHHhcCCCCceE
Q 002012 695 SFMFMGPTGVGKTELGKALADFLFNTENALV 725 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v 725 (982)
.+.+.|++|+|||++++.||+.+ +.+|+
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~l---g~~~~ 35 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHY---NIPLY 35 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHT---TCCEE
T ss_pred EEEEeCCCCCCHHHHHHHHHHHh---CcCEE
Confidence 38899999999999999999998 55554
No 376
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.59 E-value=0.092 Score=58.39 Aligned_cols=28 Identities=32% Similarity=0.560 Sum_probs=23.6
Q ss_pred CCCCcEEeCCCCCcHHHHHHHHHHHhhc
Q 002012 289 TKNNPVIIGEPGVGKTAIAEGLAQRIVR 316 (982)
Q Consensus 289 ~~~~iLL~GppGvGKT~la~~la~~l~~ 316 (982)
....++|+|+||+||||++..|+..+..
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~ 105 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIE 105 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3446788999999999999999988754
No 377
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.57 E-value=0.019 Score=58.62 Aligned_cols=33 Identities=33% Similarity=0.617 Sum_probs=27.1
Q ss_pred EEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccc
Q 002012 696 FMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYM 733 (982)
Q Consensus 696 lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~ 733 (982)
++|.||||+||++.|+.|++.+ .+..++++++.
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~-----g~~~istGdll 35 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEK-----GFVHISTGDIL 35 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH-----CCEEEEHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH-----CCeEEcHHHHH
Confidence 7899999999999999999987 35566666543
No 378
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.56 E-value=0.019 Score=58.25 Aligned_cols=33 Identities=18% Similarity=0.346 Sum_probs=26.0
Q ss_pred eEEeecCCCCchHHHHHHHHHHhcCCCCceEEEecccc
Q 002012 695 SFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEY 732 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~ 732 (982)
.++|.|++|+|||++|+.|++.+ + +..+++..+
T Consensus 17 ~I~l~G~~GsGKsT~~~~L~~~~---g--~~~i~~d~~ 49 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCEKLVKDY---S--FVHLSAGDL 49 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS---S--CEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHc---C--ceEEeHHHH
Confidence 48899999999999999999886 3 344555443
No 379
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.56 E-value=0.11 Score=53.01 Aligned_cols=96 Identities=21% Similarity=0.208 Sum_probs=53.3
Q ss_pred EEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEeccccccccccc-ccHHHHH------------HHHHHHHHhc
Q 002012 294 VIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGTCYR-GDFEKRL------------KAVLKEVTKS 360 (982)
Q Consensus 294 LL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~~~~-g~~e~~l------------~~l~~~~~~~ 360 (982)
+++||.|+||||.+-.++.+.... +.+++.+.+.- . .+|. +....++ .++++.+.
T Consensus 32 vitG~MgsGKTT~lL~~a~r~~~~-------g~kVli~k~~~-d--~R~ge~~i~s~~g~~~~a~~~~~~~~~~~~~~-- 99 (214)
T 2j9r_A 32 VICGSMFSGKSEELIRRVRRTQFA-------KQHAIVFKPCI-D--NRYSEEDVVSHNGLKVKAVPVSASKDIFKHIT-- 99 (214)
T ss_dssp EEECSTTSCHHHHHHHHHHHHHHT-------TCCEEEEECC--------------------CCEEECSSGGGGGGGCC--
T ss_pred EEECCCCCcHHHHHHHHHHHHHHC-------CCEEEEEEecc-C--CcchHHHHHhhcCCeeEEeecCCHHHHHHHHh--
Confidence 467999999999999888887543 45555554210 0 0000 0000000 12222221
Q ss_pred CCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCCCeEEEEecCchhH
Q 002012 361 NGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRGELRCIGATTLNEY 410 (982)
Q Consensus 361 ~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g~i~vI~at~~~~~ 410 (982)
+..-+|+|||+..+. .+....+..+.+. .+.||+++-..+|
T Consensus 100 ~~~dvViIDEaQF~~--------~~~V~~l~~l~~~-~~~Vi~~Gl~~DF 140 (214)
T 2j9r_A 100 EEMDVIAIDEVQFFD--------GDIVEVVQVLANR-GYRVIVAGLDQDF 140 (214)
T ss_dssp SSCCEEEECCGGGSC--------TTHHHHHHHHHHT-TCEEEEEECSBCT
T ss_pred cCCCEEEEECcccCC--------HHHHHHHHHHhhC-CCEEEEEeccccc
Confidence 123499999999874 3344566555444 6788888876554
No 380
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.54 E-value=0.35 Score=52.37 Aligned_cols=39 Identities=23% Similarity=0.301 Sum_probs=30.3
Q ss_pred CceEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccc
Q 002012 693 IASFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSE 731 (982)
Q Consensus 693 ~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~ 731 (982)
...++|+||+|+|||+++..||..+...+..+..+++..
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~ 142 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADT 142 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECT
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccc
Confidence 345889999999999999999998855555565566543
No 381
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.50 E-value=0.026 Score=55.97 Aligned_cols=36 Identities=25% Similarity=0.314 Sum_probs=28.5
Q ss_pred CCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEe
Q 002012 290 KNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLD 332 (982)
Q Consensus 290 ~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~ 332 (982)
+..++|+|++|+||||+++.|+..+... +.+++.+|
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~~-------g~~~i~~d 40 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVCH-------GIPCYTLD 40 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHT-------TCCEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhC-------CCcEEEEC
Confidence 3457899999999999999999987432 56677666
No 382
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.49 E-value=0.021 Score=59.46 Aligned_cols=23 Identities=30% Similarity=0.540 Sum_probs=21.8
Q ss_pred eEEeecCCCCchHHHHHHHHHHh
Q 002012 695 SFMFMGPTGVGKTELGKALADFL 717 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l 717 (982)
.++|.|+||+|||++|+.|++.+
T Consensus 18 ~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 18 RAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999987
No 383
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.49 E-value=0.024 Score=58.47 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=22.0
Q ss_pred CCcEEeCCCCCcHHHHHHHHHHHh
Q 002012 291 NNPVIIGEPGVGKTAIAEGLAQRI 314 (982)
Q Consensus 291 ~~iLL~GppGvGKT~la~~la~~l 314 (982)
..+.|+||+|+||||+++.|++.+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999999999988
No 384
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.49 E-value=0.015 Score=58.99 Aligned_cols=30 Identities=20% Similarity=0.400 Sum_probs=25.2
Q ss_pred CcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEe
Q 002012 292 NPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLD 332 (982)
Q Consensus 292 ~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~ 332 (982)
.+.|+|++|+||||+++.|+. + +..++..|
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~----------g~~~i~~d 32 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-L----------GAYVLDAD 32 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-T----------TCEEEEHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-C----------CCEEEEcc
Confidence 478999999999999999998 7 66666554
No 385
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.48 E-value=0.021 Score=58.53 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=20.9
Q ss_pred EEeecCCCCchHHHHHHHHHHh
Q 002012 696 FMFMGPTGVGKTELGKALADFL 717 (982)
Q Consensus 696 lLf~Gp~GtGKT~lA~~la~~l 717 (982)
++|.||||+|||++|+.|++.+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999887
No 386
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.47 E-value=0.019 Score=58.83 Aligned_cols=22 Identities=27% Similarity=0.569 Sum_probs=20.8
Q ss_pred EEeecCCCCchHHHHHHHHHHh
Q 002012 696 FMFMGPTGVGKTELGKALADFL 717 (982)
Q Consensus 696 lLf~Gp~GtGKT~lA~~la~~l 717 (982)
++|.||||+|||++|+.|++.+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999876
No 387
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=94.46 E-value=0.048 Score=55.60 Aligned_cols=94 Identities=18% Similarity=0.207 Sum_probs=50.1
Q ss_pred EEeecCCCCchHH-HHHHHHHHhcCCCCceEEEeccc---cccccccccccCCCCCccccccCCchhHHHhhCCCeEEEE
Q 002012 696 FMFMGPTGVGKTE-LGKALADFLFNTENALVRIDMSE---YMEKHSVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLF 771 (982)
Q Consensus 696 lLf~Gp~GtGKT~-lA~~la~~l~~~~~~~v~i~~s~---~~~~~~~~~l~g~~~g~vg~~~~~~l~~~l~~~~~~Vl~l 771 (982)
.+++||-|+|||+ +.+.+.++. ..+..++.+...- +.+ ..+..-+|.....+-......+.+.+ ..+..+|+|
T Consensus 31 ~vitG~M~sGKTT~Llr~~~r~~-~~g~kvli~kp~~D~R~~~-~~I~Sr~G~~~~a~~v~~~~di~~~i-~~~~dvV~I 107 (219)
T 3e2i_A 31 ECITGSMFSGKSEELIRRLRRGI-YAKQKVVVFKPAIDDRYHK-EKVVSHNGNAIEAINISKASEIMTHD-LTNVDVIGI 107 (219)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHH-HTTCCEEEEEEC------------CBTTBCCEEEEESSGGGGGGSC-CTTCSEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHH-HcCCceEEEEeccCCcchh-hhHHHhcCCceeeEEeCCHHHHHHHH-hcCCCEEEE
Confidence 6789999999999 455554444 3344444443211 111 11111122211111111112233222 235679999
Q ss_pred ccccccCHHHHHHHHHhhhcC
Q 002012 772 DEIEKAHQDVFNILLQLLDDG 792 (982)
Q Consensus 772 DEidkl~~~~~~~Ll~~le~g 792 (982)
||++-+++++.+.|..+.+.|
T Consensus 108 DEaQFf~~~~v~~l~~la~~g 128 (219)
T 3e2i_A 108 DEVQFFDDEIVSIVEKLSADG 128 (219)
T ss_dssp CCGGGSCTHHHHHHHHHHHTT
T ss_pred echhcCCHHHHHHHHHHHHCC
Confidence 999999999999998887654
No 388
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.45 E-value=0.017 Score=57.53 Aligned_cols=23 Identities=39% Similarity=0.709 Sum_probs=21.4
Q ss_pred eEEeecCCCCchHHHHHHHHHHh
Q 002012 695 SFMFMGPTGVGKTELGKALADFL 717 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l 717 (982)
.++|.|+||+|||++++.|++.+
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999887
No 389
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.43 E-value=0.021 Score=58.84 Aligned_cols=34 Identities=15% Similarity=0.316 Sum_probs=27.1
Q ss_pred eEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccc
Q 002012 695 SFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYM 733 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~ 733 (982)
.++|.||||+||++.|+.|++.+ .+..++++++.
T Consensus 31 iI~llGpPGsGKgTqa~~L~~~~-----g~~hIstGdll 64 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLVQKF-----HFNHLSSGDLL 64 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHH-----CCEEECHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-----CCceEcHHHHH
Confidence 37889999999999999999987 35556665543
No 390
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=94.41 E-value=0.21 Score=58.47 Aligned_cols=38 Identities=26% Similarity=0.292 Sum_probs=29.0
Q ss_pred ceEEeecCCCCchHHHHHHHHHHhcCC----CCceEEEeccc
Q 002012 694 ASFMFMGPTGVGKTELGKALADFLFNT----ENALVRIDMSE 731 (982)
Q Consensus 694 ~~lLf~Gp~GtGKT~lA~~la~~l~~~----~~~~v~i~~s~ 731 (982)
+|+|+.|.+|+|||.+.+.|...+... +..++.+|...
T Consensus 215 pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpKg 256 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKM 256 (574)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSSS
T ss_pred CeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCCh
Confidence 479999999999999999877755321 34577788764
No 391
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=94.41 E-value=0.18 Score=51.51 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=17.8
Q ss_pred CCcEEeCCCCCcHHHHH-HHHHHHh
Q 002012 291 NNPVIIGEPGVGKTAIA-EGLAQRI 314 (982)
Q Consensus 291 ~~iLL~GppGvGKT~la-~~la~~l 314 (982)
.++++.+|+|+|||..+ -.+...+
T Consensus 52 ~~~lv~~pTGsGKT~~~~~~~l~~l 76 (224)
T 1qde_A 52 HDVLAQAQSGTGKTGTFSIAALQRI 76 (224)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCEEEECCCCCcHHHHHHHHHHHHH
Confidence 57999999999999873 3333433
No 392
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=94.38 E-value=0.1 Score=54.34 Aligned_cols=25 Identities=28% Similarity=0.558 Sum_probs=21.4
Q ss_pred CCCCcEEeCCCCCcHHHHHHHHHHH
Q 002012 289 TKNNPVIIGEPGVGKTAIAEGLAQR 313 (982)
Q Consensus 289 ~~~~iLL~GppGvGKT~la~~la~~ 313 (982)
...+++|+|++|+||||++..|...
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHcCC
Confidence 3457999999999999999998754
No 393
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.37 E-value=0.031 Score=56.09 Aligned_cols=24 Identities=29% Similarity=0.306 Sum_probs=21.8
Q ss_pred cEEeCCCCCcHHHHHHHHHHHhhc
Q 002012 293 PVIIGEPGVGKTAIAEGLAQRIVR 316 (982)
Q Consensus 293 iLL~GppGvGKT~la~~la~~l~~ 316 (982)
++|.|++|+||||+++.|++.+..
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 678999999999999999998854
No 394
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.36 E-value=0.02 Score=58.28 Aligned_cols=24 Identities=29% Similarity=0.206 Sum_probs=21.9
Q ss_pred CCcEEeCCCCCcHHHHHHHHHHHh
Q 002012 291 NNPVIIGEPGVGKTAIAEGLAQRI 314 (982)
Q Consensus 291 ~~iLL~GppGvGKT~la~~la~~l 314 (982)
..++|.|+||+||||+++.|++.+
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Confidence 357889999999999999999988
No 395
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.36 E-value=0.066 Score=57.93 Aligned_cols=80 Identities=13% Similarity=0.170 Sum_probs=45.9
Q ss_pred CcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccc-------ccc-------ccccHHHHHHHHHHHH
Q 002012 292 NPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVA-------GTC-------YRGDFEKRLKAVLKEV 357 (982)
Q Consensus 292 ~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~-------~~~-------~~g~~e~~l~~l~~~~ 357 (982)
-++++||||+|||+|+-.++....... .+..++++|...-.. |.. ..-..+...-.+++.+
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g-----~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l 104 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQY-----PDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQL 104 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHC-----TTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcC-----CCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence 468889999999999887776654311 145667776432111 000 0012222202333333
Q ss_pred --HhcCCCeEEEEccchhhhh
Q 002012 358 --TKSNGQIILFIDELHTIIG 376 (982)
Q Consensus 358 --~~~~~~~IL~IDEi~~l~~ 376 (982)
.....+.+|+||=|..+..
T Consensus 105 ~~i~~~~~~lvVIDSI~aL~~ 125 (333)
T 3io5_A 105 DAIERGEKVVVFIDSLGNLAS 125 (333)
T ss_dssp HTCCTTCCEEEEEECSTTCBC
T ss_pred HHhhccCceEEEEeccccccc
Confidence 1235678999999999874
No 396
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.32 E-value=0.048 Score=57.16 Aligned_cols=33 Identities=18% Similarity=0.381 Sum_probs=26.0
Q ss_pred eEEeecCCCCchHHHHHHHHHHhcCCCCceEEEecccc
Q 002012 695 SFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEY 732 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~ 732 (982)
.++|.||||+|||++|+.|++.+ + +..++.+++
T Consensus 31 ~I~l~G~~GsGKsT~a~~L~~~~---g--~~~is~~~~ 63 (243)
T 3tlx_A 31 RYIFLGAPGSGKGTQSLNLKKSH---C--YCHLSTGDL 63 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH---C--CEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---C--CeEEecHHH
Confidence 49999999999999999999887 3 344555443
No 397
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.28 E-value=0.08 Score=57.96 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=21.2
Q ss_pred CCCcEEeCCCCCcHHHHHHHHHHHh
Q 002012 290 KNNPVIIGEPGVGKTAIAEGLAQRI 314 (982)
Q Consensus 290 ~~~iLL~GppGvGKT~la~~la~~l 314 (982)
..-++|+||||+|||++|..++...
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4457889999999999999998763
No 398
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.28 E-value=0.02 Score=59.35 Aligned_cols=23 Identities=22% Similarity=0.473 Sum_probs=21.5
Q ss_pred eEEeecCCCCchHHHHHHHHHHh
Q 002012 695 SFMFMGPTGVGKTELGKALADFL 717 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l 717 (982)
.++|.|+||+|||++|+.|++.+
T Consensus 9 ~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 9 RAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999986
No 399
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.27 E-value=0.018 Score=59.37 Aligned_cols=23 Identities=17% Similarity=0.215 Sum_probs=21.7
Q ss_pred eEEeecCCCCchHHHHHHHHHHh
Q 002012 695 SFMFMGPTGVGKTELGKALADFL 717 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l 717 (982)
.++|.||||+|||++++.|++.+
T Consensus 7 ~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 7 KVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999999987
No 400
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.27 E-value=0.033 Score=55.24 Aligned_cols=36 Identities=25% Similarity=0.391 Sum_probs=29.0
Q ss_pred eEEeecCCCCchHHHHHHHHHHhcCCCCceEEEecc
Q 002012 695 SFMFMGPTGVGKTELGKALADFLFNTENALVRIDMS 730 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s 730 (982)
.+.|.|++|+|||++++.|+..+...+.+++.+|..
T Consensus 7 ~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~ 42 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGD 42 (179)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECCh
Confidence 488999999999999999999874445567766643
No 401
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.26 E-value=0.041 Score=54.86 Aligned_cols=37 Identities=27% Similarity=0.317 Sum_probs=29.0
Q ss_pred eEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccc
Q 002012 695 SFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSE 731 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~ 731 (982)
.++|.|++|+|||++++.|++.+...+..+..++...
T Consensus 15 ~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~ 51 (186)
T 2yvu_A 15 VVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDW 51 (186)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHH
Confidence 4889999999999999999999854455555565433
No 402
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.26 E-value=0.03 Score=58.30 Aligned_cols=25 Identities=28% Similarity=0.523 Sum_probs=22.5
Q ss_pred CCCcEEeCCCCCcHHHHHHHHHHHh
Q 002012 290 KNNPVIIGEPGVGKTAIAEGLAQRI 314 (982)
Q Consensus 290 ~~~iLL~GppGvGKT~la~~la~~l 314 (982)
+..+.|.||||+||||+++.|++.+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3467888999999999999999998
No 403
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.25 E-value=0.021 Score=57.43 Aligned_cols=33 Identities=18% Similarity=0.333 Sum_probs=26.4
Q ss_pred eEEeecCCCCchHHHHHHHHHHhcCCCCceEEEecccc
Q 002012 695 SFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEY 732 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~ 732 (982)
.++|.|+||+|||++|+.|++.+ + +..+++..+
T Consensus 14 ~I~l~G~~GsGKsT~a~~L~~~l---~--~~~i~~d~~ 46 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQCEKLVEKY---G--FTHLSTGEL 46 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH---T--CEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---C--CeEEcHHHH
Confidence 38899999999999999999987 3 344555444
No 404
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.24 E-value=0.023 Score=57.38 Aligned_cols=31 Identities=23% Similarity=0.429 Sum_probs=26.0
Q ss_pred CcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEe
Q 002012 292 NPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLD 332 (982)
Q Consensus 292 ~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~ 332 (982)
.+.|+|++|+||||+++.|++.+ |..++..|
T Consensus 14 iIgltG~~GSGKSTva~~L~~~l----------g~~vid~D 44 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKY----------GAHVVNVD 44 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH----------CCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc----------CCEEEECc
Confidence 36788999999999999999987 77766654
No 405
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.22 E-value=0.08 Score=57.53 Aligned_cols=27 Identities=30% Similarity=0.368 Sum_probs=23.0
Q ss_pred CCCcEEeCCCCCcHHHHHHHHHHHhhc
Q 002012 290 KNNPVIIGEPGVGKTAIAEGLAQRIVR 316 (982)
Q Consensus 290 ~~~iLL~GppGvGKT~la~~la~~l~~ 316 (982)
+.-++|+||+|+||||++..||..+..
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~ 130 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVD 130 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHh
Confidence 345678999999999999999998854
No 406
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.22 E-value=0.025 Score=59.98 Aligned_cols=38 Identities=24% Similarity=0.381 Sum_probs=28.8
Q ss_pred eEEeecCCCCchHHHHHHHHHHhcCCCCceEEEecccc
Q 002012 695 SFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEY 732 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~ 732 (982)
.++|.|+||+|||++|+.|++.+...+.+++.++...+
T Consensus 6 lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~ 43 (260)
T 3a4m_A 6 LIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLI 43 (260)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHH
Confidence 48999999999999999999986333555655565443
No 407
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.19 E-value=0.42 Score=45.56 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=20.1
Q ss_pred CCcEEeCCCCCcHHHHHHHHHHH
Q 002012 291 NNPVIIGEPGVGKTAIAEGLAQR 313 (982)
Q Consensus 291 ~~iLL~GppGvGKT~la~~la~~ 313 (982)
.+++++|++|+|||+++..+...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999988754
No 408
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.18 E-value=0.023 Score=62.36 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=21.3
Q ss_pred CcEEeCCCCCcHHHHHHHHHHHh
Q 002012 292 NPVIIGEPGVGKTAIAEGLAQRI 314 (982)
Q Consensus 292 ~iLL~GppGvGKT~la~~la~~l 314 (982)
-++|.||+|+|||++|..||+.+
T Consensus 9 lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCcCcHHHHHHHHHHHc
Confidence 47788999999999999999988
No 409
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.15 E-value=0.057 Score=60.46 Aligned_cols=28 Identities=21% Similarity=0.336 Sum_probs=24.0
Q ss_pred CCCCCcEEeCCCCCcHHHHHHHHHHHhh
Q 002012 288 RTKNNPVIIGEPGVGKTAIAEGLAQRIV 315 (982)
Q Consensus 288 ~~~~~iLL~GppGvGKT~la~~la~~l~ 315 (982)
.....++|+||+|+||||+++.++..+.
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 3445688999999999999999999875
No 410
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.15 E-value=0.04 Score=55.80 Aligned_cols=33 Identities=27% Similarity=0.435 Sum_probs=26.6
Q ss_pred eEEeecCCCCchHHHHHHHHHHhcCCCCceEEEecccc
Q 002012 695 SFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEY 732 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~ 732 (982)
.+.|.||+|+|||++++.|+..+ + .+.++...+
T Consensus 31 ~i~l~G~~GsGKSTl~~~L~~~~---g--~~~i~~d~~ 63 (200)
T 4eun_A 31 HVVVMGVSGSGKTTIAHGVADET---G--LEFAEADAF 63 (200)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH---C--CEEEEGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHhh---C--CeEEccccc
Confidence 48899999999999999999987 3 355665554
No 411
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.14 E-value=0.056 Score=61.04 Aligned_cols=37 Identities=24% Similarity=0.179 Sum_probs=27.5
Q ss_pred eEEeecCCCCchHHHHHHHHHHhcC------CCCceEEEeccc
Q 002012 695 SFMFMGPTGVGKTELGKALADFLFN------TENALVRIDMSE 731 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~~------~~~~~v~i~~s~ 731 (982)
.+.|+||||+|||++++.++-.... .+...++++..+
T Consensus 180 i~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred EEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 3889999999999999987644311 235577887765
No 412
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.13 E-value=0.024 Score=58.24 Aligned_cols=23 Identities=17% Similarity=0.369 Sum_probs=21.7
Q ss_pred eEEeecCCCCchHHHHHHHHHHh
Q 002012 695 SFMFMGPTGVGKTELGKALADFL 717 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l 717 (982)
.++|.|+||+|||++|+.|++.+
T Consensus 7 ~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 7 NLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999987
No 413
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.12 E-value=0.023 Score=56.57 Aligned_cols=24 Identities=29% Similarity=0.541 Sum_probs=21.3
Q ss_pred CCcEEeCCCCCcHHHHHHHHHHHh
Q 002012 291 NNPVIIGEPGVGKTAIAEGLAQRI 314 (982)
Q Consensus 291 ~~iLL~GppGvGKT~la~~la~~l 314 (982)
.-++|+||+|+||||+++.|+..+
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 357889999999999999999875
No 414
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.12 E-value=0.059 Score=54.59 Aligned_cols=37 Identities=22% Similarity=0.257 Sum_probs=28.1
Q ss_pred eEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccc
Q 002012 695 SFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSE 731 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~ 731 (982)
.+.+.|++|+|||++++.|+..+...+..++.++...
T Consensus 24 ~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 24 VLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD 60 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCc
Confidence 4889999999999999999998743345555554443
No 415
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.11 E-value=0.022 Score=58.00 Aligned_cols=26 Identities=19% Similarity=0.128 Sum_probs=22.7
Q ss_pred CCCcEEeCCCCCcHHHHHHHHHHHhh
Q 002012 290 KNNPVIIGEPGVGKTAIAEGLAQRIV 315 (982)
Q Consensus 290 ~~~iLL~GppGvGKT~la~~la~~l~ 315 (982)
+..++|+|+||+||||+++.|++.+.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 34578899999999999999999873
No 416
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.11 E-value=0.024 Score=56.60 Aligned_cols=33 Identities=15% Similarity=0.273 Sum_probs=25.9
Q ss_pred eEEeecCCCCchHHHHHHHHHHhcCCCCceEEEecccc
Q 002012 695 SFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEY 732 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~ 732 (982)
.++|.|+||+|||++|+.|++.+ + +..++..++
T Consensus 8 ~I~l~G~~GsGKsT~~~~L~~~l---~--~~~i~~d~~ 40 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANIVRDF---G--WVHLSAGDL 40 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH---C--CEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---C--CeEeeHHHH
Confidence 48899999999999999999987 3 344555443
No 417
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.09 E-value=0.054 Score=54.92 Aligned_cols=41 Identities=24% Similarity=0.172 Sum_probs=28.5
Q ss_pred hHHHHHHHHHhccC---CCCCcEEeCCCCCcHHHHHHHHHHHhh
Q 002012 275 DDEIRRCIQILSRR---TKNNPVIIGEPGVGKTAIAEGLAQRIV 315 (982)
Q Consensus 275 ~~~i~~l~~~L~~~---~~~~iLL~GppGvGKT~la~~la~~l~ 315 (982)
++.+..+++.+... .+.-+.|+|++|+||||+++.|+..+.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 4 RDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp HHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34555555544332 223366889999999999999999874
No 418
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=94.08 E-value=0.15 Score=52.48 Aligned_cols=96 Identities=22% Similarity=0.209 Sum_probs=52.0
Q ss_pred cEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccccccccccHHHH------------HHHHHHHHHhc
Q 002012 293 PVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGTCYRGDFEKR------------LKAVLKEVTKS 360 (982)
Q Consensus 293 iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~~~~g~~e~~------------l~~l~~~~~~~ 360 (982)
.+++|+.|.||||.+-..+.+.... +.+++.+... .. .+|.+....+ ..+++..+
T Consensus 22 ~v~~G~MgsGKTT~lL~~~~r~~~~-------g~kvli~kp~-~D--~Ryg~~i~sr~G~~~~a~~i~~~~di~~~~--- 88 (234)
T 2orv_A 22 QVILGPMFSGKSTELMRRVRRFQIA-------QYKCLVIKYA-KD--TRYSSSFCTHDRNTMEALPACLLRDVAQEA--- 88 (234)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHTT-------TCCEEEEEET-TC--CCC-----------CEEEEESSGGGGHHHH---
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHC-------CCeEEEEeec-CC--ccchHHHHhhcCCeeEEEecCCHHHHHHHh---
Confidence 4567999999998887777776433 4455444311 00 0110000000 01233333
Q ss_pred CCCeEEEEccchhhhhCCCCCchhhHHHHHHhhhcCCCeEEEEecCchhHh
Q 002012 361 NGQIILFIDELHTIIGAGNQSGAMDASNMLKPMLGRGELRCIGATTLNEYR 411 (982)
Q Consensus 361 ~~~~IL~IDEi~~l~~~~~~~~~~~~~~~L~~~le~g~i~vI~at~~~~~~ 411 (982)
...-+|+|||++-+. ++.. +...+++.++.||+++-..+|+
T Consensus 89 ~~~dvViIDEaQF~~---------~v~e-l~~~l~~~gi~VI~~GL~~DF~ 129 (234)
T 2orv_A 89 LGVAVIGIDEGQFFP---------DIVE-FCEAMANAGKTVIVAALDGTFQ 129 (234)
T ss_dssp TTCSEEEESSGGGCT---------THHH-HHHHHHHTTCEEEEECCSBCTT
T ss_pred ccCCEEEEEchhhhh---------hHHH-HHHHHHhCCCEEEEEecccccc
Confidence 223399999999873 1222 3344444677888888776543
No 419
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.07 E-value=0.024 Score=57.87 Aligned_cols=26 Identities=19% Similarity=0.233 Sum_probs=22.9
Q ss_pred CCCcEEeCCCCCcHHHHHHHHHHHhh
Q 002012 290 KNNPVIIGEPGVGKTAIAEGLAQRIV 315 (982)
Q Consensus 290 ~~~iLL~GppGvGKT~la~~la~~l~ 315 (982)
+..++|+|+||+||||+++.|++.+.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34688999999999999999999873
No 420
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.04 E-value=0.024 Score=55.91 Aligned_cols=32 Identities=16% Similarity=0.268 Sum_probs=24.3
Q ss_pred eEEeecCCCCchHHHHHHHHHHhcCCCCceEEEecc
Q 002012 695 SFMFMGPTGVGKTELGKALADFLFNTENALVRIDMS 730 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s 730 (982)
.++|.|+||+|||++|+.|++.. ..+..++..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~~~----~~~~~i~~d 35 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIAKN----PGFYNINRD 35 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHS----TTEEEECHH
T ss_pred EEEEecCCCCCHHHHHHHHHhhc----CCcEEecHH
Confidence 38899999999999999999831 234555543
No 421
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.04 E-value=0.14 Score=56.28 Aligned_cols=32 Identities=38% Similarity=0.459 Sum_probs=25.5
Q ss_pred ceEEeecCCCCchHHHHHHHHHHhcCCCCceE
Q 002012 694 ASFMFMGPTGVGKTELGKALADFLFNTENALV 725 (982)
Q Consensus 694 ~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v 725 (982)
..+.|+||+|+|||++++.|+..+...+..+.
T Consensus 130 ~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~ 161 (328)
T 3e70_C 130 YVIMFVGFNGSGKTTTIAKLANWLKNHGFSVV 161 (328)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCCEEE
Confidence 35889999999999999999998854444433
No 422
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.02 E-value=0.028 Score=57.57 Aligned_cols=23 Identities=13% Similarity=0.293 Sum_probs=21.4
Q ss_pred eEEeecCCCCchHHHHHHHHHHh
Q 002012 695 SFMFMGPTGVGKTELGKALADFL 717 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l 717 (982)
.++|.|+||+|||++|+.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 38899999999999999999987
No 423
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.00 E-value=0.022 Score=57.59 Aligned_cols=25 Identities=24% Similarity=0.178 Sum_probs=22.2
Q ss_pred CCCcEEeCCCCCcHHHHHHHHHHHh
Q 002012 290 KNNPVIIGEPGVGKTAIAEGLAQRI 314 (982)
Q Consensus 290 ~~~iLL~GppGvGKT~la~~la~~l 314 (982)
+..++|.|++|+||||+++.|++.+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3468899999999999999999876
No 424
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.98 E-value=0.074 Score=54.20 Aligned_cols=27 Identities=22% Similarity=0.266 Sum_probs=23.0
Q ss_pred CCCCCcEEeCCCCCcHHHHHHHHHHHh
Q 002012 288 RTKNNPVIIGEPGVGKTAIAEGLAQRI 314 (982)
Q Consensus 288 ~~~~~iLL~GppGvGKT~la~~la~~l 314 (982)
....+++|+|++|+|||+++..+....
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345689999999999999999988654
No 425
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.97 E-value=0.022 Score=58.16 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=21.6
Q ss_pred CCCcEEeCCCCCcHHHHHHHHHHHh
Q 002012 290 KNNPVIIGEPGVGKTAIAEGLAQRI 314 (982)
Q Consensus 290 ~~~iLL~GppGvGKT~la~~la~~l 314 (982)
+.-++|+||+|+||||+++.|+..+
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3457788999999999999999876
No 426
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=93.95 E-value=0.11 Score=61.88 Aligned_cols=41 Identities=24% Similarity=0.344 Sum_probs=28.7
Q ss_pred chHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCCCCchHHHHHHHHHHhc
Q 002012 668 QDIAVKSVADAIRRSRAGLSDPARPIASFMFMGPTGVGKTELGKALADFLF 718 (982)
Q Consensus 668 q~~a~~~l~~~i~~~~~g~~~~~~p~~~lLf~Gp~GtGKT~lA~~la~~l~ 718 (982)
|..++..+.+.+.. + . ..+++++|+|+|||.++-.++..+.
T Consensus 183 Q~~ai~~~~~~~~~---~------~-~~~ll~~~TGsGKT~~~~~~~~~l~ 223 (590)
T 3h1t_A 183 QQIAINRAVQSVLQ---G------K-KRSLITMATGTGKTVVAFQISWKLW 223 (590)
T ss_dssp HHHHHHHHHHHHHT---T------C-SEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc---C------C-CceEEEecCCCChHHHHHHHHHHHH
Confidence 55566666555531 1 1 2489999999999999888887764
No 427
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=93.94 E-value=0.027 Score=57.08 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=21.5
Q ss_pred CcEEeCCCCCcHHHHHHHHHHHh
Q 002012 292 NPVIIGEPGVGKTAIAEGLAQRI 314 (982)
Q Consensus 292 ~iLL~GppGvGKT~la~~la~~l 314 (982)
.+.|.|++|+||||+++.|++.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 57789999999999999999988
No 428
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.93 E-value=0.039 Score=55.14 Aligned_cols=33 Identities=27% Similarity=0.335 Sum_probs=25.7
Q ss_pred EEeecCCCCchHHHHHHHHHHhcCCCCceEEEe
Q 002012 696 FMFMGPTGVGKTELGKALADFLFNTENALVRID 728 (982)
Q Consensus 696 lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~ 728 (982)
+.|.|++|+|||++++.|++.+...+.+++..+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 789999999999999999998733244555443
No 429
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=93.91 E-value=0.032 Score=60.89 Aligned_cols=31 Identities=48% Similarity=0.785 Sum_probs=25.6
Q ss_pred eEEeecCCCCchHHHHHHHHHHhcCCCCceEEEe
Q 002012 695 SFMFMGPTGVGKTELGKALADFLFNTENALVRID 728 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~ 728 (982)
.++++||+|+|||++|+.||+.+ +..++.+|
T Consensus 7 ~i~i~GptGsGKTtla~~La~~l---~~~iis~D 37 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADAL---PCELISVD 37 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS---CEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHc---CCcEEecc
Confidence 48899999999999999999987 44555554
No 430
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=93.90 E-value=0.55 Score=47.12 Aligned_cols=18 Identities=17% Similarity=0.222 Sum_probs=15.7
Q ss_pred CCcEEeCCCCCcHHHHHH
Q 002012 291 NNPVIIGEPGVGKTAIAE 308 (982)
Q Consensus 291 ~~iLL~GppGvGKT~la~ 308 (982)
.++++.+|+|+|||..+-
T Consensus 41 ~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 41 RDILARAKNGTGKSGAYL 58 (206)
T ss_dssp CCEEEECCSSSTTHHHHH
T ss_pred CCEEEECCCCCchHHHHH
Confidence 589999999999997654
No 431
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=93.90 E-value=0.59 Score=48.46 Aligned_cols=19 Identities=26% Similarity=0.118 Sum_probs=16.2
Q ss_pred CCcEEeCCCCCcHHHHHHH
Q 002012 291 NNPVIIGEPGVGKTAIAEG 309 (982)
Q Consensus 291 ~~iLL~GppGvGKT~la~~ 309 (982)
.++++.+|+|+|||...-.
T Consensus 67 ~~~l~~apTGsGKT~~~~l 85 (242)
T 3fe2_A 67 LDMVGVAQTGSGKTLSYLL 85 (242)
T ss_dssp CCEEEEECTTSCHHHHHHH
T ss_pred CCEEEECCCcCHHHHHHHH
Confidence 5899999999999987543
No 432
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.90 E-value=0.022 Score=57.94 Aligned_cols=21 Identities=33% Similarity=0.357 Sum_probs=19.2
Q ss_pred CcEEeCCCCCcHHHHHHHHHH
Q 002012 292 NPVIIGEPGVGKTAIAEGLAQ 312 (982)
Q Consensus 292 ~iLL~GppGvGKT~la~~la~ 312 (982)
.+.|+|++|+||||+++.|+.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999987
No 433
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.87 E-value=0.25 Score=50.94 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=14.7
Q ss_pred eEEeecCCCCchHHHHHHHH-HHh
Q 002012 695 SFMFMGPTGVGKTELGKALA-DFL 717 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la-~~l 717 (982)
.+.|+||+|+|||++++.|+ ..+
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp EEEEECSCC----CHHHHHHC---
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 37899999999999999999 765
No 434
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.82 E-value=0.077 Score=60.38 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=21.4
Q ss_pred CCCcEEeCCCCCcHHHHHHHHHHHh
Q 002012 290 KNNPVIIGEPGVGKTAIAEGLAQRI 314 (982)
Q Consensus 290 ~~~iLL~GppGvGKT~la~~la~~l 314 (982)
+.-++|+|+||+||||+|+.|++.+
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhc
Confidence 3456788999999999999999876
No 435
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=93.76 E-value=0.039 Score=56.30 Aligned_cols=39 Identities=23% Similarity=0.411 Sum_probs=27.8
Q ss_pred HHHHHHHHhccC--CCCCcEEeCCCCCcHHHHHHHHHHHhh
Q 002012 277 EIRRCIQILSRR--TKNNPVIIGEPGVGKTAIAEGLAQRIV 315 (982)
Q Consensus 277 ~i~~l~~~L~~~--~~~~iLL~GppGvGKT~la~~la~~l~ 315 (982)
.+..+.+.+... .+.-+.|+||+|+||||+++.|+..+.
T Consensus 7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 7 LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 344454544332 333566889999999999999999884
No 436
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.75 E-value=0.043 Score=60.41 Aligned_cols=35 Identities=17% Similarity=0.324 Sum_probs=26.3
Q ss_pred CCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEe
Q 002012 291 NNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLD 332 (982)
Q Consensus 291 ~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~ 332 (982)
.-++|.|+||+|||+++..+|..+... +.++..++
T Consensus 47 ~LiiIaG~pG~GKTt~al~ia~~~a~~-------g~~Vl~fS 81 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLMMNMVLSALND-------DRGVAVFS 81 (338)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHT-------TCEEEEEE
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHc-------CCeEEEEe
Confidence 346777999999999999999887542 45555554
No 437
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=93.72 E-value=0.13 Score=53.40 Aligned_cols=25 Identities=24% Similarity=0.428 Sum_probs=20.0
Q ss_pred CCCCcEEeCCCCCcHHHHHHHHHHH
Q 002012 289 TKNNPVIIGEPGVGKTAIAEGLAQR 313 (982)
Q Consensus 289 ~~~~iLL~GppGvGKT~la~~la~~ 313 (982)
...-++|+|+||+|||++|..++..
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 3445788899999999999877654
No 438
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.71 E-value=0.98 Score=49.99 Aligned_cols=31 Identities=35% Similarity=0.290 Sum_probs=24.9
Q ss_pred CceEEeecCCCCchHHHHHHHHHHhcCCCCc
Q 002012 693 IASFMFMGPTGVGKTELGKALADFLFNTENA 723 (982)
Q Consensus 693 ~~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~ 723 (982)
...+.|+||+|+|||++++.|+..+...+..
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~ 187 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTK 187 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHTTCC
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhccccCCE
Confidence 3358899999999999999999988443333
No 439
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.69 E-value=0.042 Score=57.90 Aligned_cols=45 Identities=16% Similarity=0.265 Sum_probs=29.3
Q ss_pred CCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEeccccc
Q 002012 291 NNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLV 337 (982)
Q Consensus 291 ~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~ 337 (982)
..+.|.|++|+||||+|+.|++.+....+. ..+..+..+++.++.
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg~~~~d--~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLGQNEVD--YRQKQVVILSQDSFY 67 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTGGGSC--GGGCSEEEEEGGGGB
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhhhccc--ccCCceEEEecCccc
Confidence 357788999999999999999987110000 012345566666654
No 440
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=93.69 E-value=0.052 Score=53.98 Aligned_cols=33 Identities=21% Similarity=0.270 Sum_probs=26.8
Q ss_pred EEeecCCCCchHHHHHHHHHHhcCCCCceEEEecccc
Q 002012 696 FMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEY 732 (982)
Q Consensus 696 lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~ 732 (982)
+|++|++|+|||++|..++.. +.+.++++.+..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~----~~~~~yiaT~~~ 34 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD----APQVLYIATSQI 34 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS----CSSEEEEECCCC
T ss_pred EEEECCCCCcHHHHHHHHHhc----CCCeEEEecCCC
Confidence 689999999999999999864 356777777553
No 441
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.67 E-value=0.035 Score=56.21 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=21.9
Q ss_pred CCCcEEeCCCCCcHHHHHHHHHHHh
Q 002012 290 KNNPVIIGEPGVGKTAIAEGLAQRI 314 (982)
Q Consensus 290 ~~~iLL~GppGvGKT~la~~la~~l 314 (982)
+..+.|+||+|+||||+++.|...+
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3468899999999999999999876
No 442
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=93.66 E-value=0.21 Score=57.30 Aligned_cols=26 Identities=35% Similarity=0.417 Sum_probs=21.8
Q ss_pred CCcEEeCCCCCcHHHHHHHHHHHhhc
Q 002012 291 NNPVIIGEPGVGKTAIAEGLAQRIVR 316 (982)
Q Consensus 291 ~~iLL~GppGvGKT~la~~la~~l~~ 316 (982)
.-++|.|+||+|||+++..+|.....
T Consensus 198 ~liiIaG~pG~GKTtlal~ia~~~a~ 223 (444)
T 3bgw_A 198 NFVLIAARPSMGKTAFALKQAKNMSD 223 (444)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHH
Confidence 34677899999999999999987754
No 443
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.66 E-value=0.038 Score=59.65 Aligned_cols=31 Identities=39% Similarity=0.638 Sum_probs=25.2
Q ss_pred EEeecCCCCchHHHHHHHHHHhcCCCCceEEEec
Q 002012 696 FMFMGPTGVGKTELGKALADFLFNTENALVRIDM 729 (982)
Q Consensus 696 lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~ 729 (982)
++++||+|+|||++|..||+.+ +..++..|.
T Consensus 13 i~i~GptgsGKt~la~~La~~~---~~~iis~Ds 43 (316)
T 3foz_A 13 IFLMGPTASGKTALAIELRKIL---PVELISVDS 43 (316)
T ss_dssp EEEECCTTSCHHHHHHHHHHHS---CEEEEECCT
T ss_pred EEEECCCccCHHHHHHHHHHhC---CCcEEeccc
Confidence 7899999999999999999987 444554443
No 444
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=93.65 E-value=0.21 Score=52.80 Aligned_cols=19 Identities=21% Similarity=0.151 Sum_probs=16.3
Q ss_pred CCcEEeCCCCCcHHHHHHH
Q 002012 291 NNPVIIGEPGVGKTAIAEG 309 (982)
Q Consensus 291 ~~iLL~GppGvGKT~la~~ 309 (982)
.++++.+|+|+|||..+..
T Consensus 92 ~~~lv~a~TGsGKT~~~~l 110 (262)
T 3ly5_A 92 RDLLAAAKTGSGKTLAFLI 110 (262)
T ss_dssp CCCEECCCTTSCHHHHHHH
T ss_pred CcEEEEccCCCCchHHHHH
Confidence 5799999999999987643
No 445
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=93.63 E-value=0.59 Score=48.16 Aligned_cols=20 Identities=20% Similarity=0.101 Sum_probs=16.5
Q ss_pred CCCcEEeCCCCCcHHHHHHH
Q 002012 290 KNNPVIIGEPGVGKTAIAEG 309 (982)
Q Consensus 290 ~~~iLL~GppGvGKT~la~~ 309 (982)
..++++.+|+|+|||..+-.
T Consensus 62 ~~~~li~a~TGsGKT~~~~~ 81 (236)
T 2pl3_A 62 GKDVLGAAKTGSGKTLAFLV 81 (236)
T ss_dssp TCCEEEECCTTSCHHHHHHH
T ss_pred CCCEEEEeCCCCcHHHHHHH
Confidence 35899999999999986543
No 446
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.61 E-value=0.034 Score=58.30 Aligned_cols=25 Identities=36% Similarity=0.638 Sum_probs=22.7
Q ss_pred CCCcEEeCCCCCcHHHHHHHHHHHh
Q 002012 290 KNNPVIIGEPGVGKTAIAEGLAQRI 314 (982)
Q Consensus 290 ~~~iLL~GppGvGKT~la~~la~~l 314 (982)
+..++|+||+|+||||+++.|++.+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4568899999999999999999887
No 447
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.61 E-value=0.18 Score=54.64 Aligned_cols=30 Identities=37% Similarity=0.328 Sum_probs=24.5
Q ss_pred ceEEeecCCCCchHHHHHHHHHHhcCCCCc
Q 002012 694 ASFMFMGPTGVGKTELGKALADFLFNTENA 723 (982)
Q Consensus 694 ~~lLf~Gp~GtGKT~lA~~la~~l~~~~~~ 723 (982)
..+.|+||+|+|||++++.||..+...+..
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag~l~~~~g~ 130 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAHRLKNEGTK 130 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHTTCC
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHcCCe
Confidence 358899999999999999999987443333
No 448
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=93.61 E-value=0.056 Score=56.92 Aligned_cols=23 Identities=43% Similarity=0.660 Sum_probs=21.7
Q ss_pred eEEeecCCCCchHHHHHHHHHHh
Q 002012 695 SFMFMGPTGVGKTELGKALADFL 717 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l 717 (982)
.+.|+|++|+|||++++.|++.+
T Consensus 50 ~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 50 SMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 39999999999999999999987
No 449
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.59 E-value=0.054 Score=54.93 Aligned_cols=23 Identities=30% Similarity=0.534 Sum_probs=21.6
Q ss_pred eEEeecCCCCchHHHHHHHHHHh
Q 002012 695 SFMFMGPTGVGKTELGKALADFL 717 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l 717 (982)
.++|.|+||+|||++|+.|++.+
T Consensus 6 ~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 38899999999999999999987
No 450
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.58 E-value=0.079 Score=58.36 Aligned_cols=24 Identities=21% Similarity=0.612 Sum_probs=22.2
Q ss_pred ceEEeecCCCCchHHHHHHHHHHh
Q 002012 694 ASFMFMGPTGVGKTELGKALADFL 717 (982)
Q Consensus 694 ~~lLf~Gp~GtGKT~lA~~la~~l 717 (982)
.+++|+||+|+|||+++++|++.+
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHh
Confidence 359999999999999999999987
No 451
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.56 E-value=0.19 Score=47.93 Aligned_cols=22 Identities=36% Similarity=0.723 Sum_probs=19.9
Q ss_pred CcEEeCCCCCcHHHHHHHHHHH
Q 002012 292 NPVIIGEPGVGKTAIAEGLAQR 313 (982)
Q Consensus 292 ~iLL~GppGvGKT~la~~la~~ 313 (982)
+++++|++|+|||+++..+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999998764
No 452
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=93.54 E-value=0.036 Score=57.30 Aligned_cols=22 Identities=32% Similarity=0.647 Sum_probs=21.1
Q ss_pred EEeecCCCCchHHHHHHHHHHh
Q 002012 696 FMFMGPTGVGKTELGKALADFL 717 (982)
Q Consensus 696 lLf~Gp~GtGKT~lA~~la~~l 717 (982)
++|.|+||+|||++|+.|++.+
T Consensus 3 I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8899999999999999999987
No 453
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.54 E-value=0.046 Score=55.08 Aligned_cols=22 Identities=23% Similarity=0.537 Sum_probs=21.2
Q ss_pred EEeecCCCCchHHHHHHHHHHh
Q 002012 696 FMFMGPTGVGKTELGKALADFL 717 (982)
Q Consensus 696 lLf~Gp~GtGKT~lA~~la~~l 717 (982)
+.|.|++|+|||++++.|++.+
T Consensus 3 I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 3 IAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCccCHHHHHHHHHHhc
Confidence 7899999999999999999987
No 454
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=93.53 E-value=0.036 Score=56.68 Aligned_cols=28 Identities=21% Similarity=0.308 Sum_probs=23.9
Q ss_pred CCCCCcEEeCCCCCcHHHHHHHHHHHhh
Q 002012 288 RTKNNPVIIGEPGVGKTAIAEGLAQRIV 315 (982)
Q Consensus 288 ~~~~~iLL~GppGvGKT~la~~la~~l~ 315 (982)
..+..++|+|++|+||||+++.|++.+.
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3445688899999999999999999884
No 455
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.50 E-value=0.033 Score=55.74 Aligned_cols=23 Identities=35% Similarity=0.570 Sum_probs=20.0
Q ss_pred CcEEeCCCCCcHHHHHHHHHHHh
Q 002012 292 NPVIIGEPGVGKTAIAEGLAQRI 314 (982)
Q Consensus 292 ~iLL~GppGvGKT~la~~la~~l 314 (982)
.++|+||+|+||||+++.|+...
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~ 26 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQL 26 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHhccc
Confidence 36789999999999999998743
No 456
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=93.48 E-value=0.041 Score=56.40 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=22.2
Q ss_pred CCcEEeCCCCCcHHHHHHHHHHHh
Q 002012 291 NNPVIIGEPGVGKTAIAEGLAQRI 314 (982)
Q Consensus 291 ~~iLL~GppGvGKT~la~~la~~l 314 (982)
..+.|+|++|+||||+++.|++.+
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 468899999999999999999988
No 457
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=93.47 E-value=0.17 Score=54.67 Aligned_cols=39 Identities=26% Similarity=0.390 Sum_probs=30.9
Q ss_pred ceEEeecCCCCchHHHHHHHHHHhc-CCCCceEEEecccc
Q 002012 694 ASFMFMGPTGVGKTELGKALADFLF-NTENALVRIDMSEY 732 (982)
Q Consensus 694 ~~lLf~Gp~GtGKT~lA~~la~~l~-~~~~~~v~i~~s~~ 732 (982)
..++|+||+|+|||+++..||..+. ..+..+..+++..+
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~ 145 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTY 145 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcc
Confidence 3589999999999999999999885 35656666666544
No 458
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=93.47 E-value=0.49 Score=49.07 Aligned_cols=19 Identities=21% Similarity=0.193 Sum_probs=15.9
Q ss_pred CCCcEEeCCCCCcHHHHHH
Q 002012 290 KNNPVIIGEPGVGKTAIAE 308 (982)
Q Consensus 290 ~~~iLL~GppGvGKT~la~ 308 (982)
..++++.+|+|+|||..+-
T Consensus 66 ~~~~l~~a~TGsGKT~~~~ 84 (245)
T 3dkp_A 66 GRELLASAPTGSGKTLAFS 84 (245)
T ss_dssp TCCEEEECCTTSCHHHHHH
T ss_pred CCCEEEECCCCCcHHHHHH
Confidence 3579999999999998754
No 459
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.39 E-value=0.038 Score=55.92 Aligned_cols=25 Identities=24% Similarity=0.302 Sum_probs=21.8
Q ss_pred CCCcEEeCCCCCcHHHHHHHHHHHh
Q 002012 290 KNNPVIIGEPGVGKTAIAEGLAQRI 314 (982)
Q Consensus 290 ~~~iLL~GppGvGKT~la~~la~~l 314 (982)
+..++|+||+|+||||+++.|+..+
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4467899999999999999999865
No 460
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.37 E-value=0.053 Score=57.20 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=22.4
Q ss_pred CCCcEEeCCCCCcHHHHHHHHHHHh
Q 002012 290 KNNPVIIGEPGVGKTAIAEGLAQRI 314 (982)
Q Consensus 290 ~~~iLL~GppGvGKT~la~~la~~l 314 (982)
...+.|+||+|+||||+++.|++.+
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhc
Confidence 3467899999999999999999988
No 461
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=93.36 E-value=0.28 Score=60.32 Aligned_cols=114 Identities=16% Similarity=0.167 Sum_probs=55.6
Q ss_pred CCCcEEeCCCCCcHHHHHHHHHHHhhc---C-CCCCCCCCC----eEE-EEeccc-ccccccccccHHHHHHHHHHHHHh
Q 002012 290 KNNPVIIGEPGVGKTAIAEGLAQRIVR---G-DVPETLQNR----KLI-SLDMAS-LVAGTCYRGDFEKRLKAVLKEVTK 359 (982)
Q Consensus 290 ~~~iLL~GppGvGKT~la~~la~~l~~---~-~~p~~l~~~----~v~-~l~~~~-l~~~~~~~g~~e~~l~~l~~~~~~ 359 (982)
..-++|+||.|+||||+.+.++....- | .+|...... +++ .+...+ +..+. ..+...+..+...+..
T Consensus 607 g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~vpa~~~~i~~~~~i~~~~~~~d~l~~~~---stf~~e~~~~~~il~~ 683 (800)
T 1wb9_A 607 RRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGR---STFMVEMTETANILHN 683 (800)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCCEEEEEEC--------------CHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHHHhcCcccchhcccceeHHHHHhhCCHHHHHHhhh---hhhhHHHHHHHHHHHh
Confidence 345778899999999999999976432 2 233211000 111 111111 11110 1111222233333333
Q ss_pred cCCCeEEEEccchhhhhCCCCCch-hh-HHHHHHhhhcCCCeEEEEecCchhH
Q 002012 360 SNGQIILFIDELHTIIGAGNQSGA-MD-ASNMLKPMLGRGELRCIGATTLNEY 410 (982)
Q Consensus 360 ~~~~~IL~IDEi~~l~~~~~~~~~-~~-~~~~L~~~le~g~i~vI~at~~~~~ 410 (982)
...+.+|++||...=. +... .. +..++..+.+..+..+|.+|...+.
T Consensus 684 a~~psLlLLDEp~~Gt----d~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el 732 (800)
T 1wb9_A 684 ATEYSLVLMDEIGRGT----STYDGLSLAWACAENLANKIKALTLFATHYFEL 732 (800)
T ss_dssp CCTTEEEEEESCCCCS----SSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGG
T ss_pred ccCCCEEEEECCCCCC----ChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHH
Confidence 4677899999995421 1111 12 2344444444446677788877663
No 462
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.34 E-value=0.055 Score=54.21 Aligned_cols=30 Identities=27% Similarity=0.423 Sum_probs=23.9
Q ss_pred EEeecCCCCchHHHHHHHHHHhcCCCCceE
Q 002012 696 FMFMGPTGVGKTELGKALADFLFNTENALV 725 (982)
Q Consensus 696 lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v 725 (982)
+.|.|++|+|||++++.|++.+-..+.+++
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~ 32 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVI 32 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 789999999999999999998743344444
No 463
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=93.34 E-value=0.035 Score=63.38 Aligned_cols=80 Identities=20% Similarity=0.212 Sum_probs=0.0
Q ss_pred hccCCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEeccccccccc-------------------cccc
Q 002012 285 LSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGTC-------------------YRGD 345 (982)
Q Consensus 285 L~~~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~~-------------------~~g~ 345 (982)
+.+..+..++|+|++|+||||++..||..+... +.++..+++.....+.. ...+
T Consensus 94 ~~~~~~~vI~ivG~~GvGKTTla~~La~~l~~~-------G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~d 166 (432)
T 2v3c_C 94 LNPKKQNVILLVGIQGSGKTTTAAKLARYIQKR-------GLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKS 166 (432)
T ss_dssp CCSSSCCCEEEECCSSSSTTHHHHHHHHHHHHH-------HCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCS
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHc-------CCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCC
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEccchhh
Q 002012 346 FEKRLKAVLKEVTKSNGQIILFIDELHTI 374 (982)
Q Consensus 346 ~e~~l~~l~~~~~~~~~~~IL~IDEi~~l 374 (982)
....+...+..+ .+.-++|||....+
T Consensus 167 p~~i~~~~l~~~---~~~D~vIIDT~G~~ 192 (432)
T 2v3c_C 167 PVDIVKEGMEKF---KKADVLIIDTAGRH 192 (432)
T ss_dssp SSTTHHHHHHTT---SSCSEEEEECCCSC
T ss_pred HHHHHHHHHHHh---hCCCEEEEcCCCCc
No 464
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=93.32 E-value=0.036 Score=60.71 Aligned_cols=31 Identities=32% Similarity=0.539 Sum_probs=25.2
Q ss_pred eEEeecCCCCchHHHHHHHHHHhcCCCCceEEEe
Q 002012 695 SFMFMGPTGVGKTELGKALADFLFNTENALVRID 728 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~ 728 (982)
.++++||+|+|||++|..||+.+ +..++..|
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~l---~~eiIs~D 72 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAHF---PLEVINSD 72 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTS---CEEEEECC
T ss_pred eEEEECCCCCCHHHHHHHHHHHC---CCcEEccc
Confidence 48899999999999999999987 44454444
No 465
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=93.31 E-value=0.21 Score=56.70 Aligned_cols=89 Identities=15% Similarity=0.134 Sum_probs=48.6
Q ss_pred eEEeecCCCCchHHHHHHHHHHhcCCCCceEEEeccccccccccc-ccc--CCCCCccccccCCchhHHHhhC------C
Q 002012 695 SFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEYMEKHSVS-RLV--GAPPGYVGYEEGGQLTEVVRRR------P 765 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~~~~~~~~-~l~--g~~~g~vg~~~~~~l~~~l~~~------~ 765 (982)
..++.|+||||||++...++.. ...+.+-...-.. ..+. ++- |....- . ....-+...+.+. +
T Consensus 163 v~~I~G~aGsGKTt~I~~~~~~-----~~~lVlTpT~~aa-~~l~~kl~~~~~~~~~-~-~~V~T~dsfL~~~~~~~~~~ 234 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEILSRVNF-----EEDLILVPGRQAA-EMIRRRANASGIIVAT-K-DNVRTVDSFLMNYGKGARCQ 234 (446)
T ss_dssp EEEEEECTTSCHHHHHHHHCCT-----TTCEEEESCHHHH-HHHHHHHTTTSCCCCC-T-TTEEEHHHHHHTTTSSCCCC
T ss_pred EEEEEcCCCCCHHHHHHHHhcc-----CCeEEEeCCHHHH-HHHHHHhhhcCccccc-c-ceEEEeHHhhcCCCCCCCCc
Confidence 3789999999999998776642 1222222211110 1111 111 110000 0 0111233333322 2
Q ss_pred CeEEEEccccccCHHHHHHHHHhhhc
Q 002012 766 YSVVLFDEIEKAHQDVFNILLQLLDD 791 (982)
Q Consensus 766 ~~Vl~lDEidkl~~~~~~~Ll~~le~ 791 (982)
..+|+|||+-++++.....++.++..
T Consensus 235 ~d~liiDE~sm~~~~~l~~l~~~~~~ 260 (446)
T 3vkw_A 235 FKRLFIDEGLMLHTGCVNFLVEMSLC 260 (446)
T ss_dssp CSEEEEETGGGSCHHHHHHHHHHTTC
T ss_pred CCEEEEeCcccCCHHHHHHHHHhCCC
Confidence 57999999999999999998887653
No 466
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.24 E-value=0.042 Score=55.53 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=21.1
Q ss_pred CCcEEeCCCCCcHHHHHHHHHHHh
Q 002012 291 NNPVIIGEPGVGKTAIAEGLAQRI 314 (982)
Q Consensus 291 ~~iLL~GppGvGKT~la~~la~~l 314 (982)
.-+.|+||+|+||||+++.|+..+
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 346789999999999999999875
No 467
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.20 E-value=0.041 Score=56.48 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=20.4
Q ss_pred CCcEEeCCCCCcHHHHHHHHHHHh
Q 002012 291 NNPVIIGEPGVGKTAIAEGLAQRI 314 (982)
Q Consensus 291 ~~iLL~GppGvGKT~la~~la~~l 314 (982)
..+.|+|++|+||||+++.|+. +
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~-l 27 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD-L 27 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-T
T ss_pred eEEEEECCCCCCHHHHHHHHHH-c
Confidence 3578899999999999999987 6
No 468
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=93.20 E-value=0.18 Score=62.77 Aligned_cols=115 Identities=17% Similarity=0.164 Sum_probs=56.9
Q ss_pred CCcEEeCCCCCcHHHHHHHHHHHhhc---C-CCCCCCCCC----eEE-EEecccccccccccccHHHHHHHHHHHHHhcC
Q 002012 291 NNPVIIGEPGVGKTAIAEGLAQRIVR---G-DVPETLQNR----KLI-SLDMASLVAGTCYRGDFEKRLKAVLKEVTKSN 361 (982)
Q Consensus 291 ~~iLL~GppGvGKT~la~~la~~l~~---~-~~p~~l~~~----~v~-~l~~~~l~~~~~~~g~~e~~l~~l~~~~~~~~ 361 (982)
.-++|+||.|.||||+.+.++....- + .+|..-... .++ .+...+.. ....+.+...+.++..-+....
T Consensus 674 ~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~d~i~~~ig~~d~l--~~~~stfs~em~~~~~il~~a~ 751 (918)
T 3thx_B 674 RVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNI--YKGRSTFMEELTDTAEIIRKAT 751 (918)
T ss_dssp CEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECCSEEEEEC------------CCHHHHHHHHHHHHHHCC
T ss_pred eEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHHHHHHHhCChHHHH--HHhHHHhhHHHHHHHHHHHhcc
Confidence 44678899999999999998754321 1 233211000 111 11111111 1112234444444444444456
Q ss_pred CCeEEEEccchhhhhCCCCCchhhHH-HHHHhhhcCCCeEEEEecCchhH
Q 002012 362 GQIILFIDELHTIIGAGNQSGAMDAS-NMLKPMLGRGELRCIGATTLNEY 410 (982)
Q Consensus 362 ~~~IL~IDEi~~l~~~~~~~~~~~~~-~~L~~~le~g~i~vI~at~~~~~ 410 (982)
.+.+|++||...=... .....+. .++..+....+..+|.+|...+.
T Consensus 752 ~p~LlLLDEP~~GlD~---~~~~~i~~~il~~L~~~~g~tvl~vTH~~el 798 (918)
T 3thx_B 752 SQSLVILDELGRGTST---HDGIAIAYATLEYFIRDVKSLTLFVTHYPPV 798 (918)
T ss_dssp TTCEEEEESTTTTSCH---HHHHHHHHHHHHHHHHTTCCEEEEECSCGGG
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHHHHHHHHHHhcCCeEEEEeCcHHH
Confidence 7789999998752210 0012333 33333334456777888877663
No 469
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.19 E-value=0.06 Score=54.68 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=21.6
Q ss_pred eEEeecCCCCchHHHHHHHHHHh
Q 002012 695 SFMFMGPTGVGKTELGKALADFL 717 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l 717 (982)
.+.|.|++|+|||++++.|++.+
T Consensus 12 ~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 12 FIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 48999999999999999999987
No 470
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.19 E-value=0.14 Score=59.33 Aligned_cols=74 Identities=20% Similarity=0.179 Sum_probs=0.0
Q ss_pred CCCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEecccccccc------------------cccccHHHH
Q 002012 288 RTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMASLVAGT------------------CYRGDFEKR 349 (982)
Q Consensus 288 ~~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~l~~~~------------------~~~g~~e~~ 349 (982)
..+..++|+|+||+||||++..||..+... +.++..+++.....+. ....+....
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~-------G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i 171 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRK-------GWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVII 171 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHT-------TCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhC-------CCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHH
Q ss_pred HHHHHHHHHhcCCCeEEEEc
Q 002012 350 LKAVLKEVTKSNGQIILFID 369 (982)
Q Consensus 350 l~~l~~~~~~~~~~~IL~ID 369 (982)
+...+..+.. .+.-++|||
T Consensus 172 ~~~al~~~~~-~~~DvvIID 190 (504)
T 2j37_W 172 ASEGVEKFKN-ENFEIIIVD 190 (504)
T ss_dssp HHHHHHHHHH-TTCCEEEEE
T ss_pred HHHHHHHHHH-CCCcEEEEe
No 471
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.18 E-value=0.044 Score=54.78 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=21.3
Q ss_pred CcEEeCCCCCcHHHHHHHHHHHhh
Q 002012 292 NPVIIGEPGVGKTAIAEGLAQRIV 315 (982)
Q Consensus 292 ~iLL~GppGvGKT~la~~la~~l~ 315 (982)
-+.|+||+|+||||+++.|+..+.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 467899999999999999998763
No 472
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.17 E-value=0.041 Score=55.89 Aligned_cols=22 Identities=36% Similarity=0.585 Sum_probs=20.9
Q ss_pred EEeecCCCCchHHHHHHHHHHh
Q 002012 696 FMFMGPTGVGKTELGKALADFL 717 (982)
Q Consensus 696 lLf~Gp~GtGKT~lA~~la~~l 717 (982)
++|+||||+|||++++.|++.+
T Consensus 15 i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 15 LVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp EEEECCTTSCHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 8899999999999999999876
No 473
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.13 E-value=0.043 Score=55.57 Aligned_cols=32 Identities=19% Similarity=0.388 Sum_probs=24.8
Q ss_pred eEEeecCCCCchHHHHHHHHHHhcCCCCceEEEecccc
Q 002012 695 SFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEY 732 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~ 732 (982)
.+.+.|++|+|||++++.|++ + +. ..+++..+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~---g~--~~i~~d~~ 34 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-L---GA--YVLDADKL 34 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-T---TC--EEEEHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-C---CC--EEEEccHH
Confidence 388999999999999999999 5 33 34555443
No 474
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=93.10 E-value=0.051 Score=56.62 Aligned_cols=26 Identities=23% Similarity=0.298 Sum_probs=23.0
Q ss_pred CCCCcEEeCCCCCcHHHHHHHHHHHh
Q 002012 289 TKNNPVIIGEPGVGKTAIAEGLAQRI 314 (982)
Q Consensus 289 ~~~~iLL~GppGvGKT~la~~la~~l 314 (982)
.+..+.|+|++|+||||+++.|++.+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34467899999999999999999988
No 475
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.05 E-value=0.053 Score=53.91 Aligned_cols=23 Identities=22% Similarity=0.538 Sum_probs=21.0
Q ss_pred eEEeecCCCCchHHHHHHHHHHh
Q 002012 695 SFMFMGPTGVGKTELGKALADFL 717 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l 717 (982)
.+.|+||+|+|||++++.|+..+
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 38899999999999999999875
No 476
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.00 E-value=0.061 Score=55.34 Aligned_cols=33 Identities=33% Similarity=0.488 Sum_probs=26.0
Q ss_pred eEEeecCCCCchHHHHHHHHHHhcCCCCceEEEecccc
Q 002012 695 SFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEY 732 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~ 732 (982)
.+.|.||+|+|||++++.|++.+ + +..+|..++
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~---g--~~~~d~g~i 39 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEAL---Q--WHLLDSGAI 39 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH---T--CEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---C--CCcccCcce
Confidence 48899999999999999999976 3 334555554
No 477
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=92.97 E-value=0.035 Score=55.88 Aligned_cols=26 Identities=38% Similarity=0.437 Sum_probs=22.3
Q ss_pred CCCCcEEeCCCCCcHHHHHHHHHHHh
Q 002012 289 TKNNPVIIGEPGVGKTAIAEGLAQRI 314 (982)
Q Consensus 289 ~~~~iLL~GppGvGKT~la~~la~~l 314 (982)
....++|+||||+|||++|..|+++.
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 34468999999999999999999765
No 478
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=92.96 E-value=0.065 Score=54.67 Aligned_cols=37 Identities=22% Similarity=0.320 Sum_probs=28.8
Q ss_pred eEEeecCCCCchHHHHHHHHHHhc-CCCCceEEEeccc
Q 002012 695 SFMFMGPTGVGKTELGKALADFLF-NTENALVRIDMSE 731 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~-~~~~~~v~i~~s~ 731 (982)
.++|.|++|+|||++++.|++.+. ..+.+++.++...
T Consensus 27 ~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 27 TIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 64 (211)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence 488999999999999999999884 3344577776433
No 479
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=92.92 E-value=0.056 Score=60.48 Aligned_cols=27 Identities=26% Similarity=0.241 Sum_probs=23.4
Q ss_pred CCCCCcEEeCCCCCcHHHHHHHHHHHh
Q 002012 288 RTKNNPVIIGEPGVGKTAIAEGLAQRI 314 (982)
Q Consensus 288 ~~~~~iLL~GppGvGKT~la~~la~~l 314 (982)
..+..++|+||||+||||+++.|+...
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 445578899999999999999999876
No 480
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=92.92 E-value=0.18 Score=51.28 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=22.0
Q ss_pred eEEeecCCCCchHHHHHHHHHHhc
Q 002012 695 SFMFMGPTGVGKTELGKALADFLF 718 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~ 718 (982)
.+.+.||+|+|||++++.|+..+.
T Consensus 24 ~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 24 LVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 488999999999999999999884
No 481
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=92.90 E-value=0.29 Score=50.69 Aligned_cols=20 Identities=30% Similarity=0.411 Sum_probs=16.0
Q ss_pred eEEeecCCCCchHHHHHHHH
Q 002012 695 SFMFMGPTGVGKTELGKALA 714 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la 714 (982)
.+++.||+|+|||++...+.
T Consensus 78 ~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 78 VVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCcHHhHHHHH
Confidence 48999999999997655443
No 482
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=92.87 E-value=0.067 Score=55.63 Aligned_cols=33 Identities=27% Similarity=0.434 Sum_probs=26.4
Q ss_pred eEEeecCCCCchHHHHHHHHHHhcCCCCceEEEecccc
Q 002012 695 SFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEY 732 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~ 732 (982)
.+.|.||+|+|||++++.|++.+ + +..++...+
T Consensus 11 ~i~i~G~~GsGKsTla~~la~~l---g--~~~~d~g~~ 43 (233)
T 3r20_A 11 VVAVDGPAGTGKSSVSRGLARAL---G--ARYLDTGAM 43 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH---T--CEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---C--CCcccCCcH
Confidence 48899999999999999999987 3 344565554
No 483
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=92.87 E-value=0.14 Score=58.85 Aligned_cols=35 Identities=17% Similarity=0.264 Sum_probs=27.7
Q ss_pred eEEeecCCCCchHHHHHHHHHHhcC-CCCceEEEec
Q 002012 695 SFMFMGPTGVGKTELGKALADFLFN-TENALVRIDM 729 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~~-~~~~~v~i~~ 729 (982)
.+++.|+||+|||+++..++..+.. .+.+++.+++
T Consensus 205 liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 205 LIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 3889999999999999999987743 3556666654
No 484
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=92.86 E-value=0.12 Score=55.71 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=21.5
Q ss_pred eEEeecCCCCchHHHHHHHHHHh
Q 002012 695 SFMFMGPTGVGKTELGKALADFL 717 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l 717 (982)
.+.+.||+|+|||++++.|+..+
T Consensus 33 ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 33 FIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999988
No 485
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=92.86 E-value=0.94 Score=46.47 Aligned_cols=25 Identities=16% Similarity=0.258 Sum_probs=18.3
Q ss_pred CCCcEEeCCCCCcHHHHHH-HHHHHh
Q 002012 290 KNNPVIIGEPGVGKTAIAE-GLAQRI 314 (982)
Q Consensus 290 ~~~iLL~GppGvGKT~la~-~la~~l 314 (982)
..++++.+|+|+|||...- .+...+
T Consensus 61 ~~~~l~~a~TGsGKT~~~~l~~l~~l 86 (230)
T 2oxc_A 61 GLDLIVQAKSGTGKTCVFSTIALDSL 86 (230)
T ss_dssp TCCEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEECCCCCcHHHHHHHHHHHHH
Confidence 3589999999999998743 333443
No 486
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=92.81 E-value=0.27 Score=54.14 Aligned_cols=25 Identities=28% Similarity=0.165 Sum_probs=19.7
Q ss_pred CCCcEEeCCCCCcHHHHHHHHHHHh
Q 002012 290 KNNPVIIGEPGVGKTAIAEGLAQRI 314 (982)
Q Consensus 290 ~~~iLL~GppGvGKT~la~~la~~l 314 (982)
..++++.+|+|+|||..+-..+...
T Consensus 44 ~~~~l~~~~TGsGKT~~~~~~~~~~ 68 (367)
T 1hv8_A 44 EYNIVAQARTGSGKTASFAIPLIEL 68 (367)
T ss_dssp CSEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CCCEEEECCCCChHHHHHHHHHHHH
Confidence 3589999999999999876655444
No 487
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.80 E-value=0.06 Score=54.75 Aligned_cols=23 Identities=22% Similarity=0.367 Sum_probs=21.6
Q ss_pred eEEeecCCCCchHHHHHHHHHHh
Q 002012 695 SFMFMGPTGVGKTELGKALADFL 717 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l 717 (982)
.++|.|++|+|||++++.|++.+
T Consensus 11 ~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 11 LIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999999987
No 488
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=92.79 E-value=0.11 Score=60.25 Aligned_cols=56 Identities=13% Similarity=0.087 Sum_probs=35.2
Q ss_pred hHHHhhcCCCC-CcccchHHHHHHHHHhcc---CCCCCcEEeCCCCCcHHHHHHHHHHHhh
Q 002012 259 LTELARSGKLD-PVIGRDDEIRRCIQILSR---RTKNNPVIIGEPGVGKTAIAEGLAQRIV 315 (982)
Q Consensus 259 l~~~~~~~~l~-~liG~~~~i~~l~~~L~~---~~~~~iLL~GppGvGKT~la~~la~~l~ 315 (982)
+.+..+.+..- +-.-+. ++-.++..... ....+++|+|.+|+||||++++||+.+.
T Consensus 361 IR~~Lr~G~~~P~~f~rp-eV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 361 LRRRLRVGGEIPEWFSYP-EVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp HHHHHHHTCCCCTTTSCH-HHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred HHHHHhCCCCCCccccCh-hhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHH
Confidence 34444544433 233443 44444433332 2345788999999999999999999993
No 489
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=92.72 E-value=0.16 Score=61.30 Aligned_cols=34 Identities=18% Similarity=0.151 Sum_probs=23.5
Q ss_pred EEeecCCCCchHHHHHHHHHHhcCCCCceEEEec
Q 002012 696 FMFMGPTGVGKTELGKALADFLFNTENALVRIDM 729 (982)
Q Consensus 696 lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~ 729 (982)
.|+.||||||||+++-.+...+...+..+..+-.
T Consensus 208 ~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~ 241 (646)
T 4b3f_X 208 AIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAP 241 (646)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcC
Confidence 7899999999998766555555444555544433
No 490
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=92.71 E-value=0.089 Score=55.35 Aligned_cols=39 Identities=15% Similarity=0.256 Sum_probs=28.3
Q ss_pred eEEeecCCCCchHHHHHHHHHHhcC-----CCCceEEEeccccc
Q 002012 695 SFMFMGPTGVGKTELGKALADFLFN-----TENALVRIDMSEYM 733 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~~-----~~~~~v~i~~s~~~ 733 (982)
.+.+.|++|+|||++|+.|++.+-. .+..++.+++.++.
T Consensus 24 iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 4889999999999999999997610 01234456766653
No 491
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=92.70 E-value=0.51 Score=48.37 Aligned_cols=20 Identities=20% Similarity=0.252 Sum_probs=16.6
Q ss_pred CCCcEEeCCCCCcHHHHHHH
Q 002012 290 KNNPVIIGEPGVGKTAIAEG 309 (982)
Q Consensus 290 ~~~iLL~GppGvGKT~la~~ 309 (982)
..++++.+|+|+|||..+-.
T Consensus 57 ~~~~l~~apTGsGKT~~~~l 76 (228)
T 3iuy_A 57 GIDLIVVAQTGTGKTLSYLM 76 (228)
T ss_dssp TCCEEEECCTTSCHHHHHHH
T ss_pred CCCEEEECCCCChHHHHHHH
Confidence 45899999999999986543
No 492
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=92.68 E-value=0.093 Score=53.25 Aligned_cols=34 Identities=29% Similarity=0.353 Sum_probs=26.5
Q ss_pred eEEeecCCCCchHHHHHHHHHHhcCCCCceEEEecccc
Q 002012 695 SFMFMGPTGVGKTELGKALADFLFNTENALVRIDMSEY 732 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l~~~~~~~v~i~~s~~ 732 (982)
.+.+.|++|+|||++++.|++.+ ..+..+++..+
T Consensus 23 ~i~i~G~~GsGKSTl~~~L~~~~----~~~~~i~~D~~ 56 (207)
T 2qt1_A 23 IIGISGVTNSGKTTLAKNLQKHL----PNCSVISQDDF 56 (207)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS----TTEEEEEGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHhc----CCcEEEeCCcc
Confidence 48899999999999999999864 13555666554
No 493
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=92.67 E-value=0.26 Score=57.48 Aligned_cols=26 Identities=8% Similarity=0.024 Sum_probs=21.7
Q ss_pred CCcEEeCCCCCcHHHHHHHHHHHhhc
Q 002012 291 NNPVIIGEPGVGKTAIAEGLAQRIVR 316 (982)
Q Consensus 291 ~~iLL~GppGvGKT~la~~la~~l~~ 316 (982)
.-++|.|+||+|||+++..+|..+..
T Consensus 243 ~l~li~G~pG~GKT~lal~~a~~~a~ 268 (503)
T 1q57_A 243 EVIMVTSGSGMVMSTFVRQQALQWGT 268 (503)
T ss_dssp CEEEEEESSCHHHHHHHHHHHHHHTT
T ss_pred eEEEEeecCCCCchHHHHHHHHHHHH
Confidence 34677899999999999999988743
No 494
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=92.65 E-value=0.046 Score=58.71 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=20.2
Q ss_pred CCcEEeCCCCCcHHHHHHHHHHHh
Q 002012 291 NNPVIIGEPGVGKTAIAEGLAQRI 314 (982)
Q Consensus 291 ~~iLL~GppGvGKT~la~~la~~l 314 (982)
..+.|+|++|+||||+++.|+ .+
T Consensus 76 ~iI~I~G~~GSGKSTva~~La-~l 98 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK-NL 98 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH-HH
T ss_pred EEEEEECCCCCCHHHHHHHHH-HC
Confidence 357888999999999999999 45
No 495
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=92.63 E-value=0.45 Score=45.46 Aligned_cols=29 Identities=24% Similarity=0.343 Sum_probs=22.4
Q ss_pred CcEEeCCCCCcHHHHHHHHHHHhhcCCCC
Q 002012 292 NPVIIGEPGVGKTAIAEGLAQRIVRGDVP 320 (982)
Q Consensus 292 ~iLL~GppGvGKT~la~~la~~l~~~~~p 320 (982)
+++++|++|+|||+++..+...-.....|
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~~~~~~ 30 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEIVTTIP 30 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSSCCCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCcCcccC
Confidence 57999999999999999997654333333
No 496
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=92.62 E-value=0.12 Score=52.26 Aligned_cols=24 Identities=33% Similarity=0.339 Sum_probs=20.8
Q ss_pred CCcEEeCCCCCcHHHHHHHHHHHh
Q 002012 291 NNPVIIGEPGVGKTAIAEGLAQRI 314 (982)
Q Consensus 291 ~~iLL~GppGvGKT~la~~la~~l 314 (982)
.++++.+|+|+|||.++-.++...
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHH
Confidence 589999999999999998777654
No 497
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=92.58 E-value=0.35 Score=52.50 Aligned_cols=24 Identities=29% Similarity=0.225 Sum_probs=18.8
Q ss_pred CCCcEEeCCCCCcHHHHHHHHHHH
Q 002012 290 KNNPVIIGEPGVGKTAIAEGLAQR 313 (982)
Q Consensus 290 ~~~iLL~GppGvGKT~la~~la~~ 313 (982)
..++++.+|+|+|||..+-..+..
T Consensus 31 ~~~~lv~~~TGsGKT~~~~~~~~~ 54 (337)
T 2z0m_A 31 GKNVVVRAKTGSGKTAAYAIPILE 54 (337)
T ss_dssp TCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHh
Confidence 358999999999999877655433
No 498
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=92.55 E-value=0.15 Score=58.14 Aligned_cols=41 Identities=17% Similarity=0.270 Sum_probs=30.9
Q ss_pred CCCCcEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCCCeEEEEeccc
Q 002012 289 TKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPETLQNRKLISLDMAS 335 (982)
Q Consensus 289 ~~~~iLL~GppGvGKT~la~~la~~l~~~~~p~~l~~~~v~~l~~~~ 335 (982)
.+..++++|++|+||||++..||..+... .+.++.-+++..
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~------~G~kVllvd~D~ 139 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREK------HKKKVLVVSADV 139 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHT------SCCCEEEEECCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHh------cCCeEEEEecCC
Confidence 34567788999999999999999988542 156666666543
No 499
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=92.53 E-value=0.062 Score=54.79 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=21.1
Q ss_pred eEEeecCCCCchHHHHHHHHHHh
Q 002012 695 SFMFMGPTGVGKTELGKALADFL 717 (982)
Q Consensus 695 ~lLf~Gp~GtGKT~lA~~la~~l 717 (982)
.+.|+||+|+|||++++.|+..+
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHST
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 38899999999999999999876
No 500
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=92.53 E-value=0.8 Score=47.84 Aligned_cols=19 Identities=26% Similarity=0.347 Sum_probs=16.1
Q ss_pred CCCcEEeCCCCCcHHHHHH
Q 002012 290 KNNPVIIGEPGVGKTAIAE 308 (982)
Q Consensus 290 ~~~iLL~GppGvGKT~la~ 308 (982)
..++++.+|+|+|||..+-
T Consensus 80 ~~~~lv~a~TGsGKT~~~~ 98 (249)
T 3ber_A 80 GRDIIGLAETGSGKTGAFA 98 (249)
T ss_dssp TCCEEEECCTTSCHHHHHH
T ss_pred CCCEEEEcCCCCCchhHhH
Confidence 3689999999999998754
Done!