Query 002014
Match_columns 982
No_of_seqs 622 out of 3619
Neff 5.8
Searched_HMMs 46136
Date Thu Mar 28 14:34:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002014.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002014hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1859 Leucine-rich repeat pr 100.0 1.2E-94 2.7E-99 827.1 4.4 936 5-974 1-1047(1096)
2 KOG4194 Membrane glycoprotein 99.9 3.4E-24 7.4E-29 244.2 7.6 295 25-323 101-429 (873)
3 KOG0444 Cytoskeletal regulator 99.9 2.9E-24 6.3E-29 245.0 0.5 290 24-321 30-373 (1255)
4 PLN00113 leucine-rich repeat r 99.8 1E-20 2.3E-25 239.2 17.2 218 67-296 122-345 (968)
5 KOG4194 Membrane glycoprotein 99.8 2.5E-22 5.3E-27 229.1 1.7 254 66-324 81-355 (873)
6 PLN00113 leucine-rich repeat r 99.8 1.3E-20 2.8E-25 238.4 16.4 253 67-323 168-441 (968)
7 KOG0472 Leucine-rich repeat pr 99.8 1.8E-20 3.9E-25 207.0 -4.1 242 25-296 67-310 (565)
8 KOG0444 Cytoskeletal regulator 99.8 2.8E-20 6.1E-25 212.8 -2.7 259 25-296 102-375 (1255)
9 KOG4237 Extracellular matrix p 99.7 2.2E-18 4.7E-23 190.7 4.4 294 56-355 35-391 (498)
10 KOG0472 Leucine-rich repeat pr 99.7 2.3E-19 5E-24 198.3 -7.7 286 29-326 12-313 (565)
11 PRK15387 E3 ubiquitin-protein 99.7 1.8E-16 3.8E-21 194.1 13.8 251 21-328 196-463 (788)
12 PRK15370 E3 ubiquitin-protein 99.7 1.6E-16 3.4E-21 195.1 11.9 262 22-330 174-435 (754)
13 KOG1259 Nischarin, modulator o 99.7 3.6E-17 7.8E-22 175.6 5.1 302 14-335 127-452 (490)
14 KOG0618 Serine/threonine phosp 99.7 1.6E-17 3.5E-22 198.6 2.5 270 25-323 240-513 (1081)
15 PRK15387 E3 ubiquitin-protein 99.6 4.8E-16 1E-20 190.3 13.1 237 25-298 221-460 (788)
16 KOG0618 Serine/threonine phosp 99.6 2.8E-17 6.1E-22 196.6 0.4 253 28-298 47-422 (1081)
17 KOG4237 Extracellular matrix p 99.6 4.1E-16 8.9E-21 172.9 1.8 254 30-301 50-364 (498)
18 PLN03210 Resistant to P. syrin 99.6 2.7E-14 5.9E-19 184.3 17.4 270 26-320 589-903 (1153)
19 PRK15370 E3 ubiquitin-protein 99.6 3.2E-15 6.8E-20 183.6 7.1 229 24-297 197-429 (754)
20 PLN03210 Resistant to P. syrin 99.5 4.9E-14 1.1E-18 182.0 16.2 231 64-319 612-878 (1153)
21 KOG0617 Ras suppressor protein 99.5 9.2E-16 2E-20 154.3 -0.5 128 169-298 57-188 (264)
22 cd00116 LRR_RI Leucine-rich re 99.5 2.2E-14 4.8E-19 157.9 10.3 89 237-325 194-293 (319)
23 PF14580 LRR_9: Leucine-rich r 99.5 3.6E-15 7.8E-20 153.5 3.7 156 178-337 7-165 (175)
24 cd00116 LRR_RI Leucine-rich re 99.5 2.4E-14 5.3E-19 157.6 8.2 258 27-322 24-319 (319)
25 KOG0617 Ras suppressor protein 99.4 9.5E-16 2.1E-20 154.2 -7.6 176 84-296 30-212 (264)
26 KOG3207 Beta-tubulin folding c 99.4 2.4E-14 5.2E-19 160.8 0.1 312 3-337 47-379 (505)
27 KOG0532 Leucine-rich repeat (L 99.2 2.6E-13 5.7E-18 156.2 -6.1 192 64-293 76-270 (722)
28 KOG0532 Leucine-rich repeat (L 99.1 1.2E-11 2.6E-16 142.8 2.1 176 109-299 73-250 (722)
29 PF14580 LRR_9: Leucine-rich r 99.1 5.1E-11 1.1E-15 122.9 6.2 137 197-336 3-139 (175)
30 KOG2982 Uncharacterized conser 99.1 3.2E-11 6.9E-16 130.5 3.8 284 84-418 68-368 (418)
31 COG4886 Leucine-rich repeat (L 99.0 3E-10 6.5E-15 130.2 6.4 193 91-298 97-292 (394)
32 COG4886 Leucine-rich repeat (L 99.0 3.2E-10 6.9E-15 130.0 6.2 148 169-323 141-290 (394)
33 KOG0531 Protein phosphatase 1, 99.0 1.4E-10 3E-15 134.7 0.5 228 81-326 89-321 (414)
34 KOG0531 Protein phosphatase 1, 98.8 3.1E-10 6.7E-15 131.8 -2.5 245 25-298 71-320 (414)
35 KOG1259 Nischarin, modulator o 98.8 6E-10 1.3E-14 120.7 -0.4 132 189-326 282-415 (490)
36 KOG1909 Ran GTPase-activating 98.8 2.5E-09 5.4E-14 118.4 4.1 84 167-250 156-255 (382)
37 KOG1909 Ran GTPase-activating 98.8 2.6E-09 5.6E-14 118.3 3.8 226 68-323 35-311 (382)
38 KOG3207 Beta-tubulin folding c 98.8 5.2E-10 1.1E-14 126.5 -3.2 210 108-327 118-343 (505)
39 KOG1644 U2-associated snRNP A' 98.6 3.6E-08 7.7E-13 102.6 5.3 120 192-334 43-162 (233)
40 PLN03150 hypothetical protein; 98.4 4.2E-07 9.1E-12 111.2 7.4 104 88-224 419-526 (623)
41 KOG1859 Leucine-rich repeat pr 98.4 1.6E-08 3.6E-13 119.7 -5.3 134 192-332 165-301 (1096)
42 PLN03150 hypothetical protein; 98.3 8.7E-07 1.9E-11 108.4 7.7 103 112-247 419-526 (623)
43 PF13855 LRR_8: Leucine rich r 98.2 1.3E-06 2.7E-11 74.4 3.3 58 168-225 1-61 (61)
44 KOG2123 Uncharacterized conser 98.2 1.7E-07 3.6E-12 101.5 -2.6 116 212-330 18-135 (388)
45 PF13855 LRR_8: Leucine rich r 98.2 1.1E-06 2.3E-11 74.8 2.8 59 236-295 1-61 (61)
46 KOG1644 U2-associated snRNP A' 98.2 2.2E-06 4.9E-11 89.5 5.4 108 167-295 41-152 (233)
47 KOG2982 Uncharacterized conser 98.0 5.3E-06 1.2E-10 90.8 4.1 83 64-146 72-157 (418)
48 KOG4658 Apoptotic ATPase [Sign 97.9 6.3E-06 1.4E-10 104.0 4.3 89 80-179 564-653 (889)
49 COG5238 RNA1 Ran GTPase-activa 97.9 1.7E-05 3.8E-10 85.9 5.7 131 167-297 91-256 (388)
50 COG5238 RNA1 Ran GTPase-activa 97.8 7.4E-06 1.6E-10 88.8 1.2 218 25-271 29-285 (388)
51 KOG4658 Apoptotic ATPase [Sign 97.7 2.3E-05 5E-10 99.0 3.9 177 86-272 544-731 (889)
52 PF12799 LRR_4: Leucine Rich r 97.6 5.6E-05 1.2E-09 60.8 3.9 41 169-209 2-42 (44)
53 KOG4579 Leucine-rich repeat (L 97.6 6.2E-06 1.3E-10 81.7 -2.3 129 169-299 28-162 (177)
54 KOG4579 Leucine-rich repeat (L 97.6 5.1E-06 1.1E-10 82.3 -3.6 128 192-325 28-161 (177)
55 KOG2120 SCF ubiquitin ligase, 97.5 2.8E-06 6.1E-11 92.9 -6.2 193 67-295 140-350 (419)
56 KOG2739 Leucine-rich acidic nu 97.5 6.3E-05 1.4E-09 81.5 3.5 115 190-325 42-156 (260)
57 PF12799 LRR_4: Leucine Rich r 97.3 0.00029 6.3E-09 56.7 3.7 40 191-230 1-41 (44)
58 KOG2120 SCF ubiquitin ligase, 97.3 3E-05 6.5E-10 85.1 -2.6 82 169-250 186-274 (419)
59 PRK15386 type III secretion pr 97.2 0.0012 2.5E-08 76.8 9.1 136 83-269 48-188 (426)
60 KOG3665 ZYG-1-like serine/thre 97.2 0.00021 4.5E-09 88.5 2.9 106 190-296 147-263 (699)
61 PRK15386 type III secretion pr 97.1 0.0012 2.5E-08 76.8 8.6 135 108-294 49-188 (426)
62 KOG3665 ZYG-1-like serine/thre 96.8 0.0011 2.3E-08 82.4 4.8 137 192-328 123-268 (699)
63 KOG2739 Leucine-rich acidic nu 96.7 0.001 2.2E-08 72.3 2.9 79 164-242 61-149 (260)
64 KOG2123 Uncharacterized conser 96.6 0.0002 4.2E-09 78.3 -3.5 63 167-230 18-80 (388)
65 PF13306 LRR_5: Leucine rich r 95.3 0.051 1.1E-06 52.0 7.2 112 167-285 11-128 (129)
66 KOG3763 mRNA export factor TAP 95.1 0.0086 1.9E-07 71.0 1.3 88 234-324 216-313 (585)
67 PF13306 LRR_5: Leucine rich r 94.3 0.06 1.3E-06 51.5 5.0 109 82-229 7-118 (129)
68 KOG4308 LRR-containing protein 94.2 0.0016 3.5E-08 77.6 -7.6 182 89-298 89-305 (478)
69 KOG4308 LRR-containing protein 92.4 0.0059 1.3E-07 72.9 -6.7 163 166-328 113-308 (478)
70 KOG1947 Leucine rich repeat pr 91.9 0.13 2.8E-06 60.0 3.7 38 84-121 185-224 (482)
71 PF00560 LRR_1: Leucine Rich R 89.7 0.19 4.1E-06 34.4 1.4 21 169-189 1-21 (22)
72 KOG4341 F-box protein containi 87.9 0.28 6E-06 57.0 2.0 127 189-317 292-433 (483)
73 KOG0473 Leucine-rich repeat pr 87.6 0.024 5.3E-07 61.1 -6.2 87 208-296 37-124 (326)
74 PF00560 LRR_1: Leucine Rich R 86.7 0.25 5.4E-06 33.8 0.5 21 112-133 1-21 (22)
75 KOG1947 Leucine rich repeat pr 85.5 0.36 7.8E-06 56.2 1.3 59 67-125 192-258 (482)
76 KOG0473 Leucine-rich repeat pr 80.2 0.082 1.8E-06 57.2 -6.1 86 186-271 37-124 (326)
77 PF13504 LRR_7: Leucine rich r 80.1 1.1 2.4E-05 28.9 1.4 16 169-184 2-17 (17)
78 PF13504 LRR_7: Leucine rich r 76.2 1.5 3.2E-05 28.4 1.1 14 259-272 2-15 (17)
79 TIGR00864 PCC polycystin catio 73.8 2.8 6.1E-05 58.7 3.9 38 264-302 1-38 (2740)
80 KOG4341 F-box protein containi 69.5 0.64 1.4E-05 54.2 -2.9 36 87-122 138-175 (483)
81 smart00369 LRR_TYP Leucine-ric 68.1 3.8 8.3E-05 28.8 1.8 19 110-128 1-19 (26)
82 smart00370 LRR Leucine-rich re 68.1 3.8 8.3E-05 28.8 1.8 19 110-128 1-19 (26)
83 PF13516 LRR_6: Leucine Rich r 66.5 2.4 5.2E-05 29.4 0.5 22 110-131 1-22 (24)
84 KOG3763 mRNA export factor TAP 65.0 4.7 0.0001 48.7 2.8 75 255-332 215-292 (585)
85 smart00370 LRR Leucine-rich re 63.6 5.4 0.00012 28.0 1.9 23 86-108 1-23 (26)
86 smart00369 LRR_TYP Leucine-ric 63.6 5.4 0.00012 28.0 1.9 23 86-108 1-23 (26)
87 KOG3864 Uncharacterized conser 62.8 1.1 2.4E-05 47.8 -2.5 85 192-296 102-189 (221)
88 PHA02858 EIF2a-like PKR inhibi 59.8 15 0.00033 34.0 4.4 70 827-901 6-79 (86)
89 smart00365 LRR_SD22 Leucine-ri 51.6 13 0.00028 27.0 2.1 15 192-206 3-17 (26)
90 KOG3864 Uncharacterized conser 48.2 15 0.00032 39.6 2.9 81 63-143 101-184 (221)
91 smart00365 LRR_SD22 Leucine-ri 43.6 19 0.0004 26.2 1.9 17 213-229 2-18 (26)
92 smart00364 LRR_BAC Leucine-ric 40.1 18 0.00039 26.4 1.4 18 258-275 2-19 (26)
93 smart00364 LRR_BAC Leucine-ric 39.2 17 0.00036 26.5 1.1 17 169-185 3-19 (26)
94 PF15410 PH_9: Pleckstrin homo 33.3 36 0.00078 33.1 2.8 30 893-922 86-115 (119)
95 smart00368 LRR_RI Leucine rich 29.4 40 0.00086 24.5 1.8 15 111-125 2-16 (28)
96 PF11150 DUF2927: Protein of u 20.2 67 0.0015 34.8 2.2 21 607-627 144-167 (213)
No 1
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=100.00 E-value=1.2e-94 Score=827.12 Aligned_cols=936 Identities=41% Similarity=0.576 Sum_probs=804.4
Q ss_pred cchhHHHHHHHHHhhcCcchhcCCcEEEec-CCCccchHhhhhcccccccccCCCCccccccccccCCCCCCchhhHHHh
Q 002014 5 TGDRYLEKLVKFVEQQAGPLIEGSIVLKLN-PAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRIL 83 (982)
Q Consensus 5 ~g~~~~~~lv~~l~~~~~~lL~sl~~L~L~-~~~L~~Lp~~L~~L~~Le~L~~~~~~~~l~l~~LdLs~n~~L~~Lp~~L 83 (982)
+|++|++.+-.||...++.++.+..+|.|+ +..++....++..+++|+....+.+.+++++.+.+.++.+.+.++...+
T Consensus 1 ~~d~~l~kLa~lLre~gD~lLsg~~tL~L~~p~l~~lnh~~l~s~~EL~lg~~g~~~~~f~a~~s~~ads~vl~qLq~i~ 80 (1096)
T KOG1859|consen 1 TGDRYLEKLANLLRENGDKLLSGTFTLKLNGPALLHLNHLRLISLRELELGLSGAPVDYFRAYVSDNADSRVLEQLQRIL 80 (1096)
T ss_pred CccHHHHHHHHHHHhcccceecceeEEEeccHHHHHHHHHHHHhhHHHhhccCCCCCceeEEecCCcccchHHHHHHHHH
Confidence 589999999999999999999999999999 6777777778888899998888999999999999999999999999888
Q ss_pred cCCCCCcEEEccCCCCCCCC-CcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhccCCCccchhhcccchhccc
Q 002014 84 KLLTSLKVVSALPPPARDPT-PLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIK 162 (982)
Q Consensus 84 ~~L~~Lk~L~Ls~N~L~~~i-P~sf~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N~L~~L~~l~~~~l~~L~ 162 (982)
.-+++++.|.+-.-.-.+.. |-.+..+..|++|.|.++.|.. ..++..+.+.++.++++|.+..+..++...+.++.
T Consensus 81 d~lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ 158 (1096)
T KOG1859|consen 81 DFLQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICHNSLDALRHVFASCGGDIS 158 (1096)
T ss_pred HHHhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccc
Confidence 88999999988877766665 7788899999999999999976 77899999999999999999999999999999999
Q ss_pred CCCCCCCccEEEccCCccccchhhcCCCCCCCEEEcCCCCCCCCCCcCCCCCCCEEEcCCCCCCCccccccccccceeec
Q 002014 163 DSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLV 242 (982)
Q Consensus 163 ~l~~L~~Lq~LdLS~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~~L~~L~sL~~LdLS~N~Ls~L~~l~~~L~sL~~L~ 242 (982)
+.+.|..|...++++|.|..+..++.-++.|+.|+|++|+++.+..+..|+.|++|||++|.++.+|.+...-..|..|+
T Consensus 159 ns~~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~ 238 (1096)
T KOG1859|consen 159 NSPVWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLN 238 (1096)
T ss_pred cchhhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhhheeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999998765555699999
Q ss_pred ccCCcCCCcccCCCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchhHhhhcC---CCceeecCC
Q 002014 243 LRNNALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFA---HPAKLKVDG 319 (982)
Q Consensus 243 Ls~N~Ls~L~~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~~~r~~v~~~l~---~L~lL~Ldg 319 (982)
|++|.++.+.++.++.+|+.|||++|.|.+...+..++.+..|+.|+|.|||++|.+|+|...+.++. .+..+.|||
T Consensus 239 lrnN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p~hRaataqYl~~~~a~~~f~LDg 318 (1096)
T KOG1859|consen 239 LRNNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAPWHRAATAQYLHKNSAPVKFKLDG 318 (1096)
T ss_pred ecccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCHHHHHHHHhHhccccCCcceEecc
Confidence 99999999999999999999999999999998888899999999999999999999999999988887 688899999
Q ss_pred CccChHHHHHHHHHHHhhcCCCCCccccCCCCCCCCCCCchhhhhhhhhhhhcccccccccccC--CCCCCCCCCccccc
Q 002014 320 KEISTRELWERQLIIARRQKRPAGFGFYSPAKGNADGDGNANRKRKKACRLASIESEEESTCVG--SDRESVSCDNEIES 397 (982)
Q Consensus 320 N~Is~~e~~~~~~l~~~~~~~~~~~~~~~P~~~~~~~~~~~~~k~kk~rRL~~i~~~e~~~c~~--Sd~~S~~c~~~s~s 397 (982)
..++..+.++.+.....+...|..|+.|+|+.......+++.++++++.|++.+..+++.+.+. |+.++..|+-+.++
T Consensus 319 k~l~~~efwk~~s~~~hr~~~p~s~~~~S~a~~~~~~dgS~~~s~gki~tl~~ihs~~~s~~v~r~S~~e~at~DpE~~s 398 (1096)
T KOG1859|consen 319 KALGGREFWKRQSGVSHRSSRPASYGFYSPARSENTSDGSQFRSKGKIYTLASIHSEDESTYVNRISDCESATCDPEESS 398 (1096)
T ss_pred eeccchhhhhhhhheecCCCCCCCCCCCCchhccCCCccchhhhcCceeecccccchhhhheeccccccccccCCccccc
Confidence 9999999999999999999999999999999999998999999999999999999999988887 78888888877665
Q ss_pred c--ccccCCCchHHHHHHHHHHHHHHhhhhhhhHHHhHhhhccccccccCCceeecccccCccchhhhhcccCCcccccc
Q 002014 398 K--EENVASDDDAEIIDLMSRVEHMKRERSILWLREFKEWMDHTSENFVDGSICSGATLMNCEEDNYIKNKRSQPHLAES 475 (982)
Q Consensus 398 k--de~~~sd~d~ei~dl~~klE~lkke~s~~Wl~ef~ewm~e~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 475 (982)
. .+++....+....+++.++++++++++..|+|+|+|||+....++.++.+....+.+++++ +.+.+....+..+.+
T Consensus 399 ~~~t~a~~f~q~~pe~el~s~~~hl~~~r~vl~lR~~~Ew~~~p~~~~~~~s~~sqpt~seq~~-~tk~rn~p~~e~~g~ 477 (1096)
T KOG1859|consen 399 EINTEAAKFSQEAPEFELISKVEHLKKERSVLWLREFKEWLDSPNEDFMDVSKTSQPTESEQKY-YTKLRNEPLHEGSGT 477 (1096)
T ss_pred cCCCccccccCCCchhhhccchHHHhhhhhHHHHHHHhhhhcCCchhhccccCCCCCcchhcCc-ccccCCCCcccccCC
Confidence 4 4444455555577999999999999999999999999999999999999999999999975 666666667777789
Q ss_pred cccccccccccCCCCcccccccCCCccCCCCccccccccccCCCcccccCcccCCcccccccccccCCccCCCCCccccc
Q 002014 476 SKYVSGSVQASGDESSTNILESENSYADMPTGLHAYQSFDHIGSLGITGGFSLPGIGRMELRQENEKPYLHDGAGAATVQ 555 (982)
Q Consensus 476 s~~~~~~~~~s~~~~~~n~le~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (982)
.+|+.|+...+-..+.+|.+|..++|+|+-+|+..+++.+...+..++.....+.-...|+||++ +.++++|....+
T Consensus 478 p~~tp~sl~~~i~~~p~~n~e~~~~~~~~~~g~~~e~~~e~~et~~et~~e~~~~~~et~ln~~~---~~c~legpp~~~ 554 (1096)
T KOG1859|consen 478 PRYTPGSLHHNISSTPTNNVELASTFDATITGIKSEANDESGETLYETCTEGEETNQETDLNQKH---QLCTLEGPPDRH 554 (1096)
T ss_pred CcCCCCccchhhccCcccchhhcccccccccchhhhcccccccccccccccchhhhhhhhccccc---eeccccCCcccc
Confidence 99999999999999999999999999999999999999999999999988888888889999655 999999999888
Q ss_pred -------cccccccccccccccccccccCCCCcccCCcccCCCCCCCCCCCCchhhhHHHHhhhHHHHHHhhccCc----
Q 002014 556 -------SKSFHQDTFTIQDRRMVENIHESPLTPIDDITDAFSSSARPGSPPHYREDILHRRHNLVAEILQLSAES---- 624 (982)
Q Consensus 556 -------~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~p~spp~~~~d~l~rr~~l~~~~lq~~~~~---- 624 (982)
+.|.+-.++.+++.+..|||+|+.+ ++.+++..+.+|+|||||++|+|+||++|++||||++||+
T Consensus 555 ~~~~~l~vss~~l~e~~l~~a~~dE~~~m~tl----ea~q~e~~s~~~sSp~~~~kD~L~~r~~lsl~il~ic~d~~~~~ 630 (1096)
T KOG1859|consen 555 EELLRLYVSSSNLQEDPLSDAESDENGNMSTL----EAKQSETGSLTPSSPPHYQKDVLTRRANLSLEILQICADSRSIN 630 (1096)
T ss_pred hhhheeecccccccccchhhhhhhcccceeee----ecccccccccCCCCCCCccccccccchhHHHHHHHhCccccccc
Confidence 8888888999999999999999999 6888889999999999999999999999999999999999
Q ss_pred ceeecCCCCCcCCccCCCCCCCCcccccccCCcccccccccccccccccccccCCCCCcccccc-------------cc-
Q 002014 625 YSVVSSDSKTSCSDDDFREYGPSMLEVDQSINPEHEYSSAEVHSLLNLFEEDHNDQPHEIDCQR-------------EN- 690 (982)
Q Consensus 625 ~~~~s~~~~~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~- 690 (982)
|+|+|+|+.++|+++++++.+. .+.+..++...+.+..|++.=--|-..++-+... ++
T Consensus 631 y~v~~~D~~ss~~e~en~ls~~--------~~~~~eq~~~~rdL~~~r~~i~~C~~cgt~F~~eqp~kg~~~kelr~pd~ 702 (1096)
T KOG1859|consen 631 YSVASSDKQSSCSEVENYLSEE--------LESNLEQILLQRDLTENRISIYRCVNCGTQFLIEQPEKGSKIKELRCPDS 702 (1096)
T ss_pred ceeecccccchhhhhhhcccHh--------hhhhHhhhhhhhhhhccccceeeeccccccccccCcccccchhhhcCcch
Confidence 9999999999999999998877 4455556777777777765211122222222222 12
Q ss_pred cc--ccccCCCCCCCCccccchhhhhHhHhhc--cccceeeeecccccccchhhhhhhhccCCccccCCccc-ccccccc
Q 002014 691 CK--NNGFSAGGNDGEVDSSVNQEAHLLEKNK--RKHTRRVISLLKEQNTVAKTEALQNLNGNLNISEADNV-GEQGKHI 765 (982)
Q Consensus 691 ~~--~~~f~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 765 (982)
+| +.+|.+|.|.-+-.+.|+|+.+|.+|+- |||++|.+..+++..- +|-+.++. +-..-.|
T Consensus 703 ~k~~t~~v~~~~~s~~~~~~v~a~~rl~p~~~~~rkp~e~~~ap~~~es~--------------~ci~kg~~shl~~ad~ 768 (1096)
T KOG1859|consen 703 RKVYTTNVTSGLHSLKPSGGVNAEPRLSPKMIVERKPVERLVAPINEESS--------------NCIGKGEASHLSDADI 768 (1096)
T ss_pred hhcccccccccccccCCccceecccccCcchhhhccchhhhccccccccc--------------cccCccchhhhhhccc
Confidence 34 7899999999777799999999999977 9999999988887763 22222211 1111111
Q ss_pred ccccccccc-ccccccccccccc-c-cc-ccccccccccccch-----hhh-HHHhhcccccCCchhhhhccceEE-EEE
Q 002014 766 FGLNYLLRT-SDKKQTRENAVMT-P-YI-SGIGSVAKFLSSVK-----EDF-VEDYFNKNVADSKSHETCMQYTVC-WIL 834 (982)
Q Consensus 766 ~~~~~~~~~-~~~~~~~~~~~~~-~-~~-~~~~~~~~~~~~~~-----~~~-~~~~f~~~~~~~~~~~~~~~~~~~-~~~ 834 (982)
+.-. -... -||+ ..+|..-. - .+ |...|...|+.++. ..| ++.||-...|.+..-|+|+.|+.| +|+
T Consensus 769 s~~~-e~~~~rDh~-fw~ns~lp~~c~~~~~~~rs~~FLe~E~~~~~~e~~q~~~~~paklav~S~~~~c~~~vS~~~i~ 846 (1096)
T KOG1859|consen 769 SDSD-EDNTIRDHE-FWENSSLPHLCTSHDEVARSKSFLETEFGLLLAEQAQVEELFPAKLAVSSHVETCRSYVSCDVIL 846 (1096)
T ss_pred CCcc-ccccccccc-hhccCCCCcccccchhhHHHHHHHHHHhhhhhhhhcccccccchhhccCCCCceeEEEecccchh
Confidence 1100 0001 1111 22333211 1 11 22334456766555 333 888999999999999999999999 999
Q ss_pred ecCCccccee-------EEEEeecCCeeEEEEEeeeecCCcccccccccccchhhHHHhhhccceEEEEEe---------
Q 002014 835 EQDFMHRGRE-------VAVLRSSENKFYVLLFGVTVDGTGSILNLLGCHKIEDIREVLIGLGLQVLRVST--------- 898 (982)
Q Consensus 835 ~~~~~~~~~e-------~~~l~~s~~k~~~ll~~~~~~~~~~~~~~l~~~~~~~~~~v~~g~glq~~r~~~--------- 898 (982)
|..+.|+||| ++||++||||+||+|++|..|-.++.++++|.|-+.|+|.|.||||+|++++.-
T Consensus 847 ~~~sTyeqre~~a~~lq~~Ll~~sqd~l~~gl~g~S~~le~sa~s~~c~~~~~d~q~~~~~l~~~~~~Les~~~~~~~~~ 926 (1096)
T KOG1859|consen 847 QICSTYEQRETDAPQLQNVLLLSSQDKLYVGLVGVSTDLEKSALSALCSHFISDFQDVSVGLGLQKVLLESEATVFQPYK 926 (1096)
T ss_pred hhhchhhhcCCCchhhhheeecccccceeeeeccccchhhhhhcccccccchhhhhhhhhHHHHHHHHHhccchhhhccc
Confidence 9999999999 999999999999999999999999999999999999999999999999988762
Q ss_pred ---------eCCceEEEEeccHHHHHHHh------------------h-----eeeeecccccCCc-----cccchhhHH
Q 002014 899 ---------EMGATYLLMTRSIEKSRQLF------------------C-----TLQIFYLVSANDK-----CSLRSLEQV 941 (982)
Q Consensus 899 ---------~~~~~~~~~~~~~~~~~~~~------------------~-----~~~~~~~~~~~~~-----~~~~s~e~~ 941 (982)
--.--++|.+|+++|+++++ . .+...|....--. ||..+.|+|
T Consensus 927 ~~~~~~~~i~hrl~~~f~~~~fkE~~e~f~~ra~lveG~~~~~~c~l~~~~~~flp~dDaa~sp~~~~~~a~s~~s~edi 1006 (1096)
T KOG1859|consen 927 FNYSDFNDIDHRLKLYFYQRKFKEDGELFKWRAKLVEGLVVMSNCKLYLMEAFFLPHDDAAKSPYQVVSVAVSRLSAEDI 1006 (1096)
T ss_pred cccccccchhhhhhhhhhhhhhhhhhHHHHHHHHHhcCchhhhhhhhhhhHhhcccccccccCcccccchhhhhhhhhhc
Confidence 22345789999999999996 2 3455565555555 899999999
Q ss_pred -------HHHHHHhhhcCCcc-eeeeeeeeeeEEeeCCceE
Q 002014 942 -------QVELFEKQICGGLK-VGIFQYSMVLFWCSEDKVI 974 (982)
Q Consensus 942 -------q~~~~~~~~~~~~~-~~~~~y~~~~~~~~~~~~~ 974 (982)
+|.|||+++|++++ +.+|||.-+.|++.....+
T Consensus 1007 ~p~~~~~~v~l~e~~~ls~lS~l~~~q~~pl~~q~~~~~~v 1047 (1096)
T KOG1859|consen 1007 LPWKLWGGVVLLEHDMLSTLSLLNYLQQIPLPFQSKLNHQV 1047 (1096)
T ss_pred CCcCCCCceEEEeccccchHHHHHHHhhCCchhhhhhcccc
Confidence 99999999999999 9999999999888765544
No 2
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.90 E-value=3.4e-24 Score=244.16 Aligned_cols=295 Identities=20% Similarity=0.204 Sum_probs=215.8
Q ss_pred hcCCcEEEecCCCccchHhhhhcccccccccCCCCc----------cccccccccCCCCCCchhhHH-HhcCCCCCcEEE
Q 002014 25 IEGSIVLKLNPAGLHYVQSRLEALRELERLLAGAPL----------DYLRAYVSDLGDHRALEQLRR-ILKLLTSLKVVS 93 (982)
Q Consensus 25 L~sl~~L~L~~~~L~~Lp~~L~~L~~Le~L~~~~~~----------~~l~l~~LdLs~n~~L~~Lp~-~L~~L~~Lk~L~ 93 (982)
+-+++.+.++.|.|..+|.-.....+|+.|.+.... -+.-+..+||+.|.. ..+|. .|..-.+|++|+
T Consensus 101 l~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~i-s~i~~~sfp~~~ni~~L~ 179 (873)
T KOG4194|consen 101 LPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLI-SEIPKPSFPAKVNIKKLN 179 (873)
T ss_pred CCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchh-hcccCCCCCCCCCceEEe
Confidence 344566777777777777644444444444432110 012234678888753 34543 566678899999
Q ss_pred ccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhccCCCccchhhcccchhcccC----------
Q 002014 94 ALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKD---------- 163 (982)
Q Consensus 94 Ls~N~L~~~iP~sf~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N~L~~L~~l~~~~l~~L~~---------- 163 (982)
|++|.|+......|..|.+|..|.|++|+|+...+..|.+|++|..+.+..|.+.....+.+..+.++..
T Consensus 180 La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~k 259 (873)
T KOG4194|consen 180 LASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISK 259 (873)
T ss_pred eccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCccc
Confidence 9999999998999999999999999999999988899999999999999999887777766665544432
Q ss_pred -----CCCCCCccEEEccCCccccchh-hcCCCCCCCEEEcCCCCCCCC--CCcCCCCCCCEEEcCCCCCCCccc-cccc
Q 002014 164 -----SPQWNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKV--DNLRKCVNLKHLDLGFNNLRSIAA-FSEV 234 (982)
Q Consensus 164 -----l~~L~~Lq~LdLS~N~Lt~LP~-sL~~L~~L~~LdLS~N~Lt~l--~~L~~L~sL~~LdLS~N~Ls~L~~-l~~~ 234 (982)
+-.+.++++|+|+.|+++.+.. ++.+++.|+.|+||+|.|..+ ..+..+++|+.|+|++|+|+.+++ .+..
T Consensus 260 L~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~ 339 (873)
T KOG4194|consen 260 LDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRV 339 (873)
T ss_pred ccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHH
Confidence 2246788999999999997765 788899999999999999886 478888899999999999998876 3445
Q ss_pred cccceeecccCCcCCCcc--cCCCCCCCCEEECcCCCCCCCch--hhhhcCCCCCcEEEecCCCCCCCcccchhHhhhcC
Q 002014 235 SCHIVKLVLRNNALTTLR--GIENLKSLEGLDISYNIISTFSE--LEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFA 310 (982)
Q Consensus 235 L~sL~~L~Ls~N~Ls~L~--~L~~L~sL~~LdLS~N~Ls~l~~--l~~L~~Lp~L~~L~LsgNpLs~~~~~r~~v~~~l~ 310 (982)
+..|+.|+|++|+|..+. .|..+.+|+.|||++|.|+...+ -..+.+|++|+.|.|.||+|...+ .+.|..++
T Consensus 340 L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~---krAfsgl~ 416 (873)
T KOG4194|consen 340 LSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIP---KRAFSGLE 416 (873)
T ss_pred HHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecc---hhhhccCc
Confidence 677888888888887763 66777777777777777653211 134566777777777777776433 45667777
Q ss_pred CCceeecCCCccC
Q 002014 311 HPAKLKVDGKEIS 323 (982)
Q Consensus 311 ~L~lL~LdgN~Is 323 (982)
.|+.|+|.+|+|.
T Consensus 417 ~LE~LdL~~Naia 429 (873)
T KOG4194|consen 417 ALEHLDLGDNAIA 429 (873)
T ss_pred ccceecCCCCcce
Confidence 7777777777664
No 3
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.88 E-value=2.9e-24 Score=244.96 Aligned_cols=290 Identities=23% Similarity=0.228 Sum_probs=203.2
Q ss_pred hhcCCcEEEecCCCccchHhhhhcccccccccCC-------------------------------CCcccccc---cccc
Q 002014 24 LIEGSIVLKLNPAGLHYVQSRLEALRELERLLAG-------------------------------APLDYLRA---YVSD 69 (982)
Q Consensus 24 lL~sl~~L~L~~~~L~~Lp~~L~~L~~Le~L~~~-------------------------------~~~~~l~l---~~Ld 69 (982)
-+...+||.|+..+|.++|+.++.|++|++|... .|.+.+++ .++|
T Consensus 30 qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lD 109 (1255)
T KOG0444|consen 30 QMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILD 109 (1255)
T ss_pred HhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeee
Confidence 3677899999999999999999999999987542 12222222 1334
Q ss_pred CCCCCCchhhHHHhcCCCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhccCCCcc
Q 002014 70 LGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNA 149 (982)
Q Consensus 70 Ls~n~~L~~Lp~~L~~L~~Lk~L~Ls~N~L~~~iP~sf~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N~L~~ 149 (982)
|++|. +..+|..+...+++-+|+|++|+|..+....|.+|+.|-+||||+|++.. +|..+..|..|.++.+++|.+..
T Consensus 110 LShNq-L~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~-LPPQ~RRL~~LqtL~Ls~NPL~h 187 (1255)
T KOG0444|consen 110 LSHNQ-LREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEM-LPPQIRRLSMLQTLKLSNNPLNH 187 (1255)
T ss_pred cchhh-hhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhh-cCHHHHHHhhhhhhhcCCChhhH
Confidence 44433 33344444444555555555555543333444455555555555555543 33445555555555555554322
Q ss_pred chhhcccchhc---------------cc-CCCCCCCccEEEccCCccccchhhcCCCCCCCEEEcCCCCCCCCC-CcCCC
Q 002014 150 LRHVFASRIVE---------------IK-DSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD-NLRKC 212 (982)
Q Consensus 150 L~~l~~~~l~~---------------L~-~l~~L~~Lq~LdLS~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~-~L~~L 212 (982)
..---...+++ ++ .+..+.+|..++||.|.|..+|+.+.++++|+.|+||+|+|+.+. ....+
T Consensus 188 fQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W 267 (1255)
T KOG0444|consen 188 FQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEW 267 (1255)
T ss_pred HHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHH
Confidence 11100001111 11 123467888999999999999999999999999999999999886 56667
Q ss_pred CCCCEEEcCCCCCCCccccccccccceeecccCCcCCC--cc-cCCCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEE
Q 002014 213 VNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTT--LR-GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLW 289 (982)
Q Consensus 213 ~sL~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~N~Ls~--L~-~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~ 289 (982)
.+|++|+||.|+++.+|.....+++|+.|.+.+|+|+- || +++.+..|+.+.+++|.+.-.| +.+..++.|+.|.
T Consensus 268 ~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVP--EglcRC~kL~kL~ 345 (1255)
T KOG0444|consen 268 ENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVP--EGLCRCVKLQKLK 345 (1255)
T ss_pred hhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCc--hhhhhhHHHHHhc
Confidence 88999999999999999888888999999999998764 65 8999999999999999999888 6788999999999
Q ss_pred ecCCCCCCCcccchhHhhhcCCCceeecCCCc
Q 002014 290 LEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKE 321 (982)
Q Consensus 290 LsgNpLs~~~~~r~~v~~~l~~L~lL~LdgN~ 321 (982)
|+.|.+...| ..+..++.+..|+|..||
T Consensus 346 L~~NrLiTLP----eaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 346 LDHNRLITLP----EAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred ccccceeech----hhhhhcCCcceeeccCCc
Confidence 9999987655 456778899999999885
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.84 E-value=1e-20 Score=239.24 Aligned_cols=218 Identities=22% Similarity=0.203 Sum_probs=93.8
Q ss_pred cccCCCCCCchhhHHHhcCCCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhccCC
Q 002014 67 VSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNS 146 (982)
Q Consensus 67 ~LdLs~n~~L~~Lp~~L~~L~~Lk~L~Ls~N~L~~~iP~sf~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N~ 146 (982)
.++|++|...+.+|. ..+++|++|+|++|.+.+.+|..++++++|++|+|++|.+.+.+|..+.++++|..+.+.+|.
T Consensus 122 ~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~ 199 (968)
T PLN00113 122 YLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQ 199 (968)
T ss_pred EEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCC
Confidence 344444444433332 234455555555555544455455555555555555555544445555555555444444443
Q ss_pred CccchhhcccchhcccCCCCCCCccEEEccCCccc-cchhhcCCCCCCCEEEcCCCCCCC-CC-CcCCCCCCCEEEcCCC
Q 002014 147 TNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLV-IMDESLQLLPAVETLDLSRNKFAK-VD-NLRKCVNLKHLDLGFN 223 (982)
Q Consensus 147 L~~L~~l~~~~l~~L~~l~~L~~Lq~LdLS~N~Lt-~LP~sL~~L~~L~~LdLS~N~Lt~-l~-~L~~L~sL~~LdLS~N 223 (982)
+... ++.. +..+++|++|+|++|.+. .+|..+..+++|++|+|++|.++. ++ .+..+++|+.|+|++|
T Consensus 200 l~~~---~p~~------l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 270 (968)
T PLN00113 200 LVGQ---IPRE------LGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQN 270 (968)
T ss_pred CcCc---CChH------HcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCC
Confidence 3211 0000 112334444444444444 344444444444444444444432 12 3444444444444444
Q ss_pred CCCC-ccccccccccceeecccCCcCCC-cc-cCCCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCC
Q 002014 224 NLRS-IAAFSEVSCHIVKLVLRNNALTT-LR-GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLC 296 (982)
Q Consensus 224 ~Ls~-L~~l~~~L~sL~~L~Ls~N~Ls~-L~-~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs 296 (982)
.+.+ ++..+..+++|+.|+|++|.+.. +| .+..+++|+.|+|++|.+....+ ..+..+++|+.|+|++|.+.
T Consensus 271 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~L~~n~l~ 345 (968)
T PLN00113 271 KLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIP-VALTSLPRLQVLQLWSNKFS 345 (968)
T ss_pred eeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCC-hhHhcCCCCCEEECcCCCCc
Confidence 4432 22222333444444444444433 11 33444444444444444443221 23344444444444444443
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.84 E-value=2.5e-22 Score=229.14 Aligned_cols=254 Identities=22% Similarity=0.216 Sum_probs=186.4
Q ss_pred ccccCCCCCCchhhHHHhcCCCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhccC
Q 002014 66 YVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHN 145 (982)
Q Consensus 66 ~~LdLs~n~~L~~Lp~~L~~L~~Lk~L~Ls~N~L~~~iP~sf~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N 145 (982)
..+|+++|+.-..=+..|.++++|++++|..|.++ .+|.......+|+.|+|.+|.|+++-...+..++.+..++++.|
T Consensus 81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN 159 (873)
T KOG4194|consen 81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN 159 (873)
T ss_pred eeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc
Confidence 34888888755555677889999999999888887 67765555677999999999999888888999998889999999
Q ss_pred CCccchhhccc-------------chhccc--CCCCCCCccEEEccCCccccchh-hcCCCCCCCEEEcCCCCCCCCC--
Q 002014 146 STNALRHVFAS-------------RIVEIK--DSPQWNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKVD-- 207 (982)
Q Consensus 146 ~L~~L~~l~~~-------------~l~~L~--~l~~L~~Lq~LdLS~N~Lt~LP~-sL~~L~~L~~LdLS~N~Lt~l~-- 207 (982)
.+..++.-.++ .|+.++ .+..+.+|..|.|+.|+|+.+|. .|.+++.|+.|+|..|+|..+.
T Consensus 160 ~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~l 239 (873)
T KOG4194|consen 160 LISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGL 239 (873)
T ss_pred hhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhh
Confidence 87777654322 233332 24456677777788888877775 6666788888888888777654
Q ss_pred CcCCCCCCCEEEcCCCCCCCccc-cccccccceeecccCCcCCCc--ccCCCCCCCCEEECcCCCCCCCchhhhhcCCCC
Q 002014 208 NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRNNALTTL--RGIENLKSLEGLDISYNIISTFSELEFLASLPY 284 (982)
Q Consensus 208 ~L~~L~sL~~LdLS~N~Ls~L~~-l~~~L~sL~~L~Ls~N~Ls~L--~~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~ 284 (982)
.|.+|++|+.|.|..|.|..+.. .+..+.++++|+|+.|++..+ .++.++++|+.|+|++|.|..+.. ..+...++
T Consensus 240 tFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~-d~Wsftqk 318 (873)
T KOG4194|consen 240 TFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHI-DSWSFTQK 318 (873)
T ss_pred hhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeec-chhhhccc
Confidence 56777777777777777777664 444567778888888887776 367777888888888888877754 55667778
Q ss_pred CcEEEecCCCCCCCcccchhHhhhcCCCceeecCCCccCh
Q 002014 285 LLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIST 324 (982)
Q Consensus 285 L~~L~LsgNpLs~~~~~r~~v~~~l~~L~lL~LdgN~Is~ 324 (982)
|+.|+|+.|.|+..+ ...|..+..|+.|.|..|.|+.
T Consensus 319 L~~LdLs~N~i~~l~---~~sf~~L~~Le~LnLs~Nsi~~ 355 (873)
T KOG4194|consen 319 LKELDLSSNRITRLD---EGSFRVLSQLEELNLSHNSIDH 355 (873)
T ss_pred ceeEeccccccccCC---hhHHHHHHHhhhhcccccchHH
Confidence 888888888887543 3556666777777777777764
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.84 E-value=1.3e-20 Score=238.38 Aligned_cols=253 Identities=20% Similarity=0.152 Sum_probs=122.1
Q ss_pred cccCCCCCCchhhHHHhcCCCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhccCC
Q 002014 67 VSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNS 146 (982)
Q Consensus 67 ~LdLs~n~~L~~Lp~~L~~L~~Lk~L~Ls~N~L~~~iP~sf~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N~ 146 (982)
.+++++|...+.+|..+.++++|++|+|++|.+.+.+|..|..+++|++|+|++|.+++.+|..+.++++|..+.+.+|.
T Consensus 168 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 247 (968)
T PLN00113 168 VLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNN 247 (968)
T ss_pred EEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCce
Confidence 44555555555555555666666666666666655555555666666666666666655555555555555555555554
Q ss_pred Ccc-chhhccc------------chh-cc-cCCCCCCCccEEEccCCccc-cchhhcCCCCCCCEEEcCCCCCCCC-C-C
Q 002014 147 TNA-LRHVFAS------------RIV-EI-KDSPQWNRLSFVSCSCNRLV-IMDESLQLLPAVETLDLSRNKFAKV-D-N 208 (982)
Q Consensus 147 L~~-L~~l~~~------------~l~-~L-~~l~~L~~Lq~LdLS~N~Lt-~LP~sL~~L~~L~~LdLS~N~Lt~l-~-~ 208 (982)
+.. ++..+.. .+. .+ ..+..+++|++|++++|.+. .+|..+..+++|+.|++++|.+... + .
T Consensus 248 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~ 327 (968)
T PLN00113 248 LTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVA 327 (968)
T ss_pred eccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChh
Confidence 321 1110000 000 00 00112344555555555544 4444445555555555555554432 1 3
Q ss_pred cCCCCCCCEEEcCCCCCCC-ccccccccccceeecccCCcCCCc--ccCCCCCCCCEEECcCCCCCCCchhhhhcCCCCC
Q 002014 209 LRKCVNLKHLDLGFNNLRS-IAAFSEVSCHIVKLVLRNNALTTL--RGIENLKSLEGLDISYNIISTFSELEFLASLPYL 285 (982)
Q Consensus 209 L~~L~sL~~LdLS~N~Ls~-L~~l~~~L~sL~~L~Ls~N~Ls~L--~~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L 285 (982)
+..+++|+.|+|++|.+.+ ++..+..+++|+.|+|++|.++.. ..+..+++|+.|++++|.+....+ ..+..+++|
T Consensus 328 ~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p-~~~~~~~~L 406 (968)
T PLN00113 328 LTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIP-KSLGACRSL 406 (968)
T ss_pred HhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCC-HHHhCCCCC
Confidence 4445555555555555442 232333344555555555555431 234444455555555555543222 344555555
Q ss_pred cEEEecCCCCCCCcccchhHhhhcCCCceeecCCCccC
Q 002014 286 LNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIS 323 (982)
Q Consensus 286 ~~L~LsgNpLs~~~~~r~~v~~~l~~L~lL~LdgN~Is 323 (982)
+.|+|++|+++... +..+..++.++.++|.+|.++
T Consensus 407 ~~L~L~~n~l~~~~---p~~~~~l~~L~~L~Ls~N~l~ 441 (968)
T PLN00113 407 RRVRLQDNSFSGEL---PSEFTKLPLVYFLDISNNNLQ 441 (968)
T ss_pred CEEECcCCEeeeEC---ChhHhcCCCCCEEECcCCccc
Confidence 55555555554321 123444555555555555554
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.76 E-value=1.8e-20 Score=207.03 Aligned_cols=242 Identities=27% Similarity=0.316 Sum_probs=194.5
Q ss_pred hcCCcEEEecCCCccchHhhhhcccccccccCCCCccccccccccCCCCCCchhhHHHhcCCCCCcEEEccCCCCCCCCC
Q 002014 25 IEGSIVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTP 104 (982)
Q Consensus 25 L~sl~~L~L~~~~L~~Lp~~L~~L~~Le~L~~~~~~~~l~l~~LdLs~n~~L~~Lp~~L~~L~~Lk~L~Ls~N~L~~~iP 104 (982)
+..+.+|.++.+.+..+|..++.+.++.. ++.+.|+ +..+|+.+..+.+|+.|+.+.|.+. .+|
T Consensus 67 L~~l~vl~~~~n~l~~lp~aig~l~~l~~--------------l~vs~n~-ls~lp~~i~s~~~l~~l~~s~n~~~-el~ 130 (565)
T KOG0472|consen 67 LACLTVLNVHDNKLSQLPAAIGELEALKS--------------LNVSHNK-LSELPEQIGSLISLVKLDCSSNELK-ELP 130 (565)
T ss_pred ccceeEEEeccchhhhCCHHHHHHHHHHH--------------hhcccch-HhhccHHHhhhhhhhhhhcccccee-ecC
Confidence 44556777777777777777766665443 3344443 5668888888888888888888887 456
Q ss_pred cCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhccCCCccchhhcccchhcccCCCCCCCccEEEccCCccccch
Q 002014 105 LSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMD 184 (982)
Q Consensus 105 ~sf~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N~L~~L~~l~~~~l~~L~~l~~L~~Lq~LdLS~N~Lt~LP 184 (982)
+.++.+..|+.|+..+|++++ .|.+++++.++..+++.+|++..++.... +|+.|++|++..|-++.+|
T Consensus 131 ~~i~~~~~l~dl~~~~N~i~s-lp~~~~~~~~l~~l~~~~n~l~~l~~~~i----------~m~~L~~ld~~~N~L~tlP 199 (565)
T KOG0472|consen 131 DSIGRLLDLEDLDATNNQISS-LPEDMVNLSKLSKLDLEGNKLKALPENHI----------AMKRLKHLDCNSNLLETLP 199 (565)
T ss_pred chHHHHhhhhhhhcccccccc-CchHHHHHHHHHHhhccccchhhCCHHHH----------HHHHHHhcccchhhhhcCC
Confidence 678888888888888888876 77788888888888888887777665432 2568899999999999999
Q ss_pred hhcCCCCCCCEEEcCCCCCCCCCCcCCCCCCCEEEcCCCCCCCcccc-ccccccceeecccCCcCCCcc-cCCCCCCCCE
Q 002014 185 ESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAF-SEVSCHIVKLVLRNNALTTLR-GIENLKSLEG 262 (982)
Q Consensus 185 ~sL~~L~~L~~LdLS~N~Lt~l~~L~~L~sL~~LdLS~N~Ls~L~~l-~~~L~sL~~L~Ls~N~Ls~L~-~L~~L~sL~~ 262 (982)
+.++.+.+|..|+|..|+|..+|.|..+..|.+|.++.|.|..++.. ...+++|..|+|+.|+++.+| .+..+.+|..
T Consensus 200 ~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~r 279 (565)
T KOG0472|consen 200 PELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLER 279 (565)
T ss_pred hhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhh
Confidence 99999999999999999999999999999999999999999888874 346788999999999999986 6777888999
Q ss_pred EECcCCCCCCCchhhhhcCCCCCcEEEecCCCCC
Q 002014 263 LDISYNIISTFSELEFLASLPYLLNLWLEGNPLC 296 (982)
Q Consensus 263 LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs 296 (982)
|||++|.|+.+| ..++++ .|+.|-+.|||+.
T Consensus 280 LDlSNN~is~Lp--~sLgnl-hL~~L~leGNPlr 310 (565)
T KOG0472|consen 280 LDLSNNDISSLP--YSLGNL-HLKFLALEGNPLR 310 (565)
T ss_pred hcccCCccccCC--cccccc-eeeehhhcCCchH
Confidence 999999999988 578888 8999999999985
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.76 E-value=2.8e-20 Score=212.76 Aligned_cols=259 Identities=21% Similarity=0.216 Sum_probs=196.7
Q ss_pred hcCCcEEEecCCCccchHhhhhcccccccccCC----------CCccccccccccCCCCCCchhhHHHhcCCCCCcEEEc
Q 002014 25 IEGSIVLKLNPAGLHYVQSRLEALRELERLLAG----------APLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSA 94 (982)
Q Consensus 25 L~sl~~L~L~~~~L~~Lp~~L~~L~~Le~L~~~----------~~~~~l~l~~LdLs~n~~L~~Lp~~L~~L~~Lk~L~L 94 (982)
++.+.+|+|+.|.|..+|..+..-+++-.|.+. -.....++.-+||++|+ ++.+|+.+.+|.+|+.|.|
T Consensus 102 l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~L 180 (1255)
T KOG0444|consen 102 LKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR-LEMLPPQIRRLSMLQTLKL 180 (1255)
T ss_pred cccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch-hhhcCHHHHHHhhhhhhhc
Confidence 455678888888888888777655543333221 11112223345666554 5556666666666666666
Q ss_pred cCCCCCCCCCcCCCCCCCccEEEeeCCCCC-ccchhhHHhhhhhhHhhhccCCCccchhhcccchhcccCCCCCCCccEE
Q 002014 95 LPPPARDPTPLSLLPFCRLKVLELRGCDLS-TSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFV 173 (982)
Q Consensus 95 s~N~L~~~iP~sf~~L~nL~~LdLS~N~Ls-s~~p~~L~~L~~LLeLLL~~N~L~~L~~l~~~~l~~L~~l~~L~~Lq~L 173 (982)
++|.+...--..+-.++.|+.|.+++.+-+ ..+|.++..|.+|..++++.|++..++..... +++|+.|
T Consensus 181 s~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~----------l~~LrrL 250 (1255)
T KOG0444|consen 181 SNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYK----------LRNLRRL 250 (1255)
T ss_pred CCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhh----------hhhhhee
Confidence 666655332233344566666666665543 24677888888888888888887777765443 6799999
Q ss_pred EccCCccccchhhcCCCCCCCEEEcCCCCCCCCC-CcCCCCCCCEEEcCCCCCC--CccccccccccceeecccCCcCCC
Q 002014 174 SCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD-NLRKCVNLKHLDLGFNNLR--SIAAFSEVSCHIVKLVLRNNALTT 250 (982)
Q Consensus 174 dLS~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~-~L~~L~sL~~LdLS~N~Ls--~L~~l~~~L~sL~~L~Ls~N~Ls~ 250 (982)
+||+|+|+.+........+|++|+||.|+++.+| ++++++.|+.|.+.+|+++ ++|...+.+.+|+.+..++|.|.-
T Consensus 251 NLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LEl 330 (1255)
T KOG0444|consen 251 NLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLEL 330 (1255)
T ss_pred ccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcccccc
Confidence 9999999988777888899999999999999998 8999999999999999865 788888888999999999999999
Q ss_pred cc-cCCCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCC
Q 002014 251 LR-GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLC 296 (982)
Q Consensus 251 L~-~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs 296 (982)
+| ++..|..|+.|.|++|++-.+| +.+.-++.|+.|+|..||=-
T Consensus 331 VPEglcRC~kL~kL~L~~NrLiTLP--eaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 331 VPEGLCRCVKLQKLKLDHNRLITLP--EAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred CchhhhhhHHHHHhcccccceeech--hhhhhcCCcceeeccCCcCc
Confidence 86 8999999999999999999998 67788999999999999853
No 9
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.72 E-value=2.2e-18 Score=190.71 Aligned_cols=294 Identities=17% Similarity=0.114 Sum_probs=212.4
Q ss_pred CCCCccccccc---cccCCCCCCchhhHHHhcCCCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHH
Q 002014 56 AGAPLDYLRAY---VSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLL 132 (982)
Q Consensus 56 ~~~~~~~l~l~---~LdLs~n~~L~~Lp~~L~~L~~Lk~L~Ls~N~L~~~iP~sf~~L~nL~~LdLS~N~Lss~~p~~L~ 132 (982)
..||..+.|.. ..-..+...+..+|..+ -+.-..|+|..|.|+.+.|.+|..+++|+.||||+|+|+.+.|.+|.
T Consensus 35 ~~CP~pC~Cs~~~g~~VdCr~~GL~eVP~~L--P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~ 112 (498)
T KOG4237|consen 35 SACPAPCTCSDVEGGIVDCRGKGLTEVPANL--PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFK 112 (498)
T ss_pred ccCCCCcccCCCCCceEEccCCCcccCcccC--CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhh
Confidence 45777777665 22334455677777642 23677889999999999999999999999999999999999999999
Q ss_pred hhhhhhHhhhcc-CCCccchhhcccchhcccC---------------CCCCCCccEEEccCCccccchh-hcCCCCCCCE
Q 002014 133 ELRHTLEKIICH-NSTNALRHVFASRIVEIKD---------------SPQWNRLSFVSCSCNRLVIMDE-SLQLLPAVET 195 (982)
Q Consensus 133 ~L~~LLeLLL~~-N~L~~L~~l~~~~l~~L~~---------------l~~L~~Lq~LdLS~N~Lt~LP~-sL~~L~~L~~ 195 (982)
+|+.+.++.+.+ |+|+.++...++.+..+.- +..+++|..|.+..|.+..++. .|..+.+++.
T Consensus 113 GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~t 192 (498)
T KOG4237|consen 113 GLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKT 192 (498)
T ss_pred hhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccch
Confidence 999999988776 7888888766654432211 2345667777777777777766 6777777777
Q ss_pred EEcCCCCCCCC-------------C-CcCCCCCCCEEEcCCCCCC-------------------------C-ccc-cccc
Q 002014 196 LDLSRNKFAKV-------------D-NLRKCVNLKHLDLGFNNLR-------------------------S-IAA-FSEV 234 (982)
Q Consensus 196 LdLS~N~Lt~l-------------~-~L~~L~sL~~LdLS~N~Ls-------------------------~-L~~-l~~~ 234 (982)
+.+..|.+... + .++......-..|.++++. . .|. .+..
T Consensus 193 lhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~ 272 (498)
T KOG4237|consen 193 LHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKK 272 (498)
T ss_pred HhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhh
Confidence 77777663210 0 1222222221112111111 1 111 3445
Q ss_pred cccceeecccCCcCCCcc--cCCCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchhHhhhcCCC
Q 002014 235 SCHIVKLVLRNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHP 312 (982)
Q Consensus 235 L~sL~~L~Ls~N~Ls~L~--~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~~~r~~v~~~l~~L 312 (982)
+++|++|+|++|+|+.+. +|..+..|+.|.|..|+|..+.. ..+.++..|+.|+|.+|+|++..+ ..|..+..+
T Consensus 273 L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~-~~f~~ls~L~tL~L~~N~it~~~~---~aF~~~~~l 348 (498)
T KOG4237|consen 273 LPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSS-GMFQGLSGLKTLSLYDNQITTVAP---GAFQTLFSL 348 (498)
T ss_pred cccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHH-HhhhccccceeeeecCCeeEEEec---cccccccee
Confidence 789999999999999983 89999999999999999998875 678899999999999999997753 457777889
Q ss_pred ceeecCCCccChHHHHHHHHHHHhhcCCCCCccccCCCCCCCC
Q 002014 313 AKLKVDGKEISTRELWERQLIIARRQKRPAGFGFYSPAKGNAD 355 (982)
Q Consensus 313 ~lL~LdgN~Is~~e~~~~~~l~~~~~~~~~~~~~~~P~~~~~~ 355 (982)
..+.|-+||+.|..+..+..-+.+......+..|-.|......
T Consensus 349 ~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~ 391 (498)
T KOG4237|consen 349 STLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQI 391 (498)
T ss_pred eeeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCchhccc
Confidence 9999999999999988776666666556666777777665543
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.69 E-value=2.3e-19 Score=198.34 Aligned_cols=286 Identities=20% Similarity=0.184 Sum_probs=180.7
Q ss_pred cEEEecCCCccchHhhhhcccccccccCCCCccccccccccCCCCCCchhhHHHhcCCCCCcEEEccCCCCCCCCCcCCC
Q 002014 29 IVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLL 108 (982)
Q Consensus 29 ~~L~L~~~~L~~Lp~~L~~L~~Le~L~~~~~~~~l~l~~LdLs~n~~L~~Lp~~L~~L~~Lk~L~Ls~N~L~~~iP~sf~ 108 (982)
-.|.++...+..+|.+.-.+- +..-....-.+-..+..+.++.|. ++.+.+.+.++..|.+|++.+|++. ..|.+++
T Consensus 12 g~lnlsnr~l~~vp~~vyq~~-~t~~e~e~wW~qv~l~~lils~N~-l~~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig 88 (565)
T KOG0472|consen 12 GSLNLSNRSLKDVPTEVYQIN-LTTGEGENWWEQVDLQKLILSHND-LEVLREDLKNLACLTVLNVHDNKLS-QLPAAIG 88 (565)
T ss_pred cccccccchhhhccHHHHHHH-hhccchhhhhhhcchhhhhhccCc-hhhccHhhhcccceeEEEeccchhh-hCCHHHH
Confidence 355566666666666554433 111111001111222334444443 3334444555555555555555554 3344455
Q ss_pred CCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhccCCCccchhhcccc------------hhcc-cCCCCCCCccEEEc
Q 002014 109 PFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASR------------IVEI-KDSPQWNRLSFVSC 175 (982)
Q Consensus 109 ~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N~L~~L~~l~~~~------------l~~L-~~l~~L~~Lq~LdL 175 (982)
.+..++.|+.++|+++. +|..+..+..+..++.++|.+..++..+... +..+ +++..+.+|..|++
T Consensus 89 ~l~~l~~l~vs~n~ls~-lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~ 167 (565)
T KOG0472|consen 89 ELEALKSLNVSHNKLSE-LPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDL 167 (565)
T ss_pred HHHHHHHhhcccchHhh-ccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhc
Confidence 55555555555555543 4445555555555555555444443322210 1111 01123456778888
Q ss_pred cCCccccchhhcCCCCCCCEEEcCCCCCCCCC-CcCCCCCCCEEEcCCCCCCCccccccccccceeecccCCcCCCcc--
Q 002014 176 SCNRLVIMDESLQLLPAVETLDLSRNKFAKVD-NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLR-- 252 (982)
Q Consensus 176 S~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~-~L~~L~sL~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~N~Ls~L~-- 252 (982)
.+|+++.+|+..-+++.|++|+...|.+..+| .++.+.+|..|+|..|.|..+|. +..+..|..|.++.|.|+.+|
T Consensus 168 ~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPe-f~gcs~L~Elh~g~N~i~~lpae 246 (565)
T KOG0472|consen 168 EGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLPE-FPGCSLLKELHVGENQIEMLPAE 246 (565)
T ss_pred cccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCCC-CCccHHHHHHHhcccHHHhhHHH
Confidence 88888877776556888888888888888875 78888888888888888888884 445688888888888888875
Q ss_pred cCCCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchhHhhhcCCCceeecCCCccChHH
Q 002014 253 GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTRE 326 (982)
Q Consensus 253 ~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~~~r~~v~~~l~~L~lL~LdgN~Is~~e 326 (982)
...++++|..|||..|+++.+| ..+.-+.+|..||+++|-|+..+ ..+..+ .++.+.|.|||+.+..
T Consensus 247 ~~~~L~~l~vLDLRdNklke~P--de~clLrsL~rLDlSNN~is~Lp----~sLgnl-hL~~L~leGNPlrTiR 313 (565)
T KOG0472|consen 247 HLKHLNSLLVLDLRDNKLKEVP--DEICLLRSLERLDLSNNDISSLP----YSLGNL-HLKFLALEGNPLRTIR 313 (565)
T ss_pred HhcccccceeeeccccccccCc--hHHHHhhhhhhhcccCCccccCC----cccccc-eeeehhhcCCchHHHH
Confidence 5668899999999999999988 56677888999999999998765 234455 6888899999987654
No 11
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.68 E-value=1.8e-16 Score=194.05 Aligned_cols=251 Identities=22% Similarity=0.206 Sum_probs=152.9
Q ss_pred CcchhcCCcEEEecCCCccchHhhhhcccccccccCCCCccccccccccCCCCCCchhhHHHhcCCCCCcEEEccCCCCC
Q 002014 21 AGPLIEGSIVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPAR 100 (982)
Q Consensus 21 ~~~lL~sl~~L~L~~~~L~~Lp~~L~~L~~Le~L~~~~~~~~l~l~~LdLs~n~~L~~Lp~~L~~L~~Lk~L~Ls~N~L~ 100 (982)
...+-.+..+|+++.++|..||..+.. +|+. +++.+|. ++.+|. .+++|++|+|++|+|+
T Consensus 196 ~~Cl~~~~~~LdLs~~~LtsLP~~l~~--~L~~--------------L~L~~N~-Lt~LP~---lp~~Lk~LdLs~N~Lt 255 (788)
T PRK15387 196 RACLNNGNAVLNVGESGLTTLPDCLPA--HITT--------------LVIPDNN-LTSLPA---LPPELRTLEVSGNQLT 255 (788)
T ss_pred HHHhcCCCcEEEcCCCCCCcCCcchhc--CCCE--------------EEccCCc-CCCCCC---CCCCCcEEEecCCccC
Confidence 344556678999999999999976642 2333 3344443 344554 2577888888888887
Q ss_pred CCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhccCCCccchhhcccchhcccCCCCCCCccEEEccCCcc
Q 002014 101 DPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRL 180 (982)
Q Consensus 101 ~~iP~sf~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N~L~~L~~l~~~~l~~L~~l~~L~~Lq~LdLS~N~L 180 (982)
.+ |.. .++|+.|+|++|.|+. +|..+. .|..+.+.+|.+..++.. .++|+.|+|++|+|
T Consensus 256 sL-P~l---p~sL~~L~Ls~N~L~~-Lp~lp~---~L~~L~Ls~N~Lt~LP~~-------------p~~L~~LdLS~N~L 314 (788)
T PRK15387 256 SL-PVL---PPGLLELSIFSNPLTH-LPALPS---GLCKLWIFGNQLTSLPVL-------------PPGLQELSVSDNQL 314 (788)
T ss_pred cc-cCc---ccccceeeccCCchhh-hhhchh---hcCEEECcCCcccccccc-------------ccccceeECCCCcc
Confidence 43 432 3577778888877765 343322 233445666665555431 12455555555555
Q ss_pred ccchhhcC-----------------CCCCCCEEEcCCCCCCCCCCcCCCCCCCEEEcCCCCCCCccccccccccceeecc
Q 002014 181 VIMDESLQ-----------------LLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVL 243 (982)
Q Consensus 181 t~LP~sL~-----------------~L~~L~~LdLS~N~Lt~l~~L~~L~sL~~LdLS~N~Ls~L~~l~~~L~sL~~L~L 243 (982)
+.+|.... ...+|+.|+|++|+|+.+|.+ ..+|+.|++++|.|..+|.. ..+|+.|+|
T Consensus 315 ~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~LP~l--p~~L~~L~Ls~N~L~~LP~l---~~~L~~LdL 389 (788)
T PRK15387 315 ASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLASLPTL--PSELYKLWAYNNRLTSLPAL---PSGLKELIV 389 (788)
T ss_pred ccCCCCcccccccccccCccccccccccccceEecCCCccCCCCCC--CcccceehhhccccccCccc---ccccceEEe
Confidence 54432110 113566666666666665532 24555666666666655543 245777777
Q ss_pred cCCcCCCcccCCCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchhHhhhcCCCceeecCCCccC
Q 002014 244 RNNALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIS 323 (982)
Q Consensus 244 s~N~Ls~L~~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~~~r~~v~~~l~~L~lL~LdgN~Is 323 (982)
++|.|+.+|.+ .++|+.|+|++|.|+.+|.. ..+|+.|+|++|.|+..| ..+..++.+..++|.+|+++
T Consensus 390 s~N~Lt~LP~l--~s~L~~LdLS~N~LssIP~l-----~~~L~~L~Ls~NqLt~LP----~sl~~L~~L~~LdLs~N~Ls 458 (788)
T PRK15387 390 SGNRLTSLPVL--PSELKELMVSGNRLTSLPML-----PSGLLSLSVYRNQLTRLP----ESLIHLSSETTVNLEGNPLS 458 (788)
T ss_pred cCCcccCCCCc--ccCCCEEEccCCcCCCCCcc-----hhhhhhhhhccCcccccC----hHHhhccCCCeEECCCCCCC
Confidence 77777776643 35677788888887777631 236777888888887443 34567788999999999998
Q ss_pred hHHHH
Q 002014 324 TRELW 328 (982)
Q Consensus 324 ~~e~~ 328 (982)
.....
T Consensus 459 ~~~~~ 463 (788)
T PRK15387 459 ERTLQ 463 (788)
T ss_pred chHHH
Confidence 65433
No 12
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.67 E-value=1.6e-16 Score=195.06 Aligned_cols=262 Identities=19% Similarity=0.195 Sum_probs=197.9
Q ss_pred cchhcCCcEEEecCCCccchHhhhhcccccccccCCCCccccccccccCCCCCCchhhHHHhcCCCCCcEEEccCCCCCC
Q 002014 22 GPLIEGSIVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARD 101 (982)
Q Consensus 22 ~~lL~sl~~L~L~~~~L~~Lp~~L~~L~~Le~L~~~~~~~~l~l~~LdLs~n~~L~~Lp~~L~~L~~Lk~L~Ls~N~L~~ 101 (982)
..+..+...|+++..++..+|..+. .+ +..++|++|. +..+|..+. ++|+.|+|++|.++.
T Consensus 174 ~Cl~~~~~~L~L~~~~LtsLP~~Ip--~~--------------L~~L~Ls~N~-LtsLP~~l~--~nL~~L~Ls~N~Lts 234 (754)
T PRK15370 174 DCLKNNKTELRLKILGLTTIPACIP--EQ--------------ITTLILDNNE-LKSLPENLQ--GNIKTLYANSNQLTS 234 (754)
T ss_pred hhcccCceEEEeCCCCcCcCCcccc--cC--------------CcEEEecCCC-CCcCChhhc--cCCCEEECCCCcccc
Confidence 4555667899999999998886542 12 2335677664 556777553 699999999999984
Q ss_pred CCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhccCCCccchhhcccchhcccCCCCCCCccEEEccCCccc
Q 002014 102 PTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLV 181 (982)
Q Consensus 102 ~iP~sf~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N~L~~L~~l~~~~l~~L~~l~~L~~Lq~LdLS~N~Lt 181 (982)
+|..+. ++|+.|+|++|+|.. +|..+. ..|..+.+++|++..++..++ ++|+.|++++|+|+
T Consensus 235 -LP~~l~--~~L~~L~Ls~N~L~~-LP~~l~--s~L~~L~Ls~N~L~~LP~~l~------------~sL~~L~Ls~N~Lt 296 (754)
T PRK15370 235 -IPATLP--DTIQEMELSINRITE-LPERLP--SALQSLDLFHNKISCLPENLP------------EELRYLSVYDNSIR 296 (754)
T ss_pred -CChhhh--ccccEEECcCCccCc-CChhHh--CCCCEEECcCCccCccccccC------------CCCcEEECCCCccc
Confidence 565543 589999999999985 666554 356677788888776654321 37999999999999
Q ss_pred cchhhcCCCCCCCEEEcCCCCCCCCCCcCCCCCCCEEEcCCCCCCCccccccccccceeecccCCcCCCcccCCCCCCCC
Q 002014 182 IMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGIENLKSLE 261 (982)
Q Consensus 182 ~LP~sL~~L~~L~~LdLS~N~Lt~l~~L~~L~sL~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~N~Ls~L~~L~~L~sL~ 261 (982)
.+|..+. ++|+.|+|++|.++.+|.. ..++|+.|++++|.++.++... +++|+.|+|++|+|+.+|.. -.++|+
T Consensus 297 ~LP~~lp--~sL~~L~Ls~N~Lt~LP~~-l~~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~L~~LP~~-lp~~L~ 370 (754)
T PRK15370 297 TLPAHLP--SGITHLNVQSNSLTALPET-LPPGLKTLEAGENALTSLPASL--PPELQVLDVSKNQITVLPET-LPPTIT 370 (754)
T ss_pred cCcccch--hhHHHHHhcCCccccCCcc-ccccceeccccCCccccCChhh--cCcccEEECCCCCCCcCChh-hcCCcC
Confidence 9887543 5799999999999988631 1368999999999999988643 37899999999999988631 136899
Q ss_pred EEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchhHhhhcCCCceeecCCCccChHHHHHH
Q 002014 262 GLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTRELWER 330 (982)
Q Consensus 262 ~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~~~r~~v~~~l~~L~lL~LdgN~Is~~e~~~~ 330 (982)
.|+|++|.|+.+|. .+. ..|+.|++++|.|...+......+..++.+..+.|++|+++.......
T Consensus 371 ~LdLs~N~Lt~LP~--~l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls~~tl~~L 435 (754)
T PRK15370 371 TLDVSRNALTNLPE--NLP--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFSERTIQNM 435 (754)
T ss_pred EEECCCCcCCCCCH--hHH--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCccHHHHHHH
Confidence 99999999999884 232 369999999999987664333444455778899999999996554443
No 13
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.67 E-value=3.6e-17 Score=175.60 Aligned_cols=302 Identities=26% Similarity=0.360 Sum_probs=214.1
Q ss_pred HHHHhhcCcchhcCCcEEEecCCCccchHhhhhcccccccccCCCCccccccccccCCCCCCchhhHHHhcCCCCCcEEE
Q 002014 14 VKFVEQQAGPLIEGSIVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVS 93 (982)
Q Consensus 14 v~~l~~~~~~lL~sl~~L~L~~~~L~~Lp~~L~~L~~Le~L~~~~~~~~l~l~~LdLs~n~~L~~Lp~~L~~L~~Lk~L~ 93 (982)
.+.+....+.++.+-+.-.+++-.+..+.+++..-+ -..+..+ .-..++ ..+.-+..|+.|-
T Consensus 127 a~~~~e~g~~ll~~~~~~~~~~l~~yaise~l~~~~-p~~~~~~--------------~k~d~~---hildf~~~l~~l~ 188 (490)
T KOG1259|consen 127 AKLFNESGDALLSSKKEYNLSALEVYAISERLSLPC-PPSLDRG--------------GKYDFS---HVLDFCTQLVALV 188 (490)
T ss_pred HHHHHhhhHHHhccCceecccchhhhhHHHHhcCCC-CCccCCC--------------CccchH---HHHHhhhheeEEE
Confidence 333444566677777888888888888877654322 1222211 111122 2233345555555
Q ss_pred ccCC--------CCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhccCC-Cccchhhcccch------
Q 002014 94 ALPP--------PARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNS-TNALRHVFASRI------ 158 (982)
Q Consensus 94 Ls~N--------~L~~~iP~sf~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N~-L~~L~~l~~~~l------ 158 (982)
.++. -+...+|-.+..+.+|..+.++++.-..+ .++.-++..+..+-.+|. +...+.+.+...
T Consensus 189 vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i--~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~ 266 (490)
T KOG1259|consen 189 VTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENI--VDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSG 266 (490)
T ss_pred ecCCCCCCccccccccccccchHHhhhhheeeeeccchhhe--eceeecCchhheeeeecccccccccccchhhhcCccC
Confidence 5432 12233444455567777777777643221 111111111111222221 111121211110
Q ss_pred --------hcccCCCCCCCccEEEccCCccccchhhcCCCCCCCEEEcCCCCCCCCCCcCCCCCCCEEEcCCCCCCCccc
Q 002014 159 --------VEIKDSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAA 230 (982)
Q Consensus 159 --------~~L~~l~~L~~Lq~LdLS~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~~L~~L~sL~~LdLS~N~Ls~L~~ 230 (982)
.-+..+..|..|+.|||++|.|+.+.+++.-+|.++.|++++|.|..+..+..+++|+.|||++|.++.+..
T Consensus 267 ~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~G 346 (490)
T KOG1259|consen 267 SEPSTSNGSALVSADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVG 346 (490)
T ss_pred CCCCccCCceEEecchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhh
Confidence 011234678999999999999999999999999999999999999999999999999999999999999888
Q ss_pred cccccccceeecccCCcCCCcccCCCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchhHhhhcC
Q 002014 231 FSEVSCHIVKLVLRNNALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFA 310 (982)
Q Consensus 231 l~~~L~sL~~L~Ls~N~Ls~L~~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~~~r~~v~~~l~ 310 (982)
+...+.++++|.|+.|.|..+.++..+-+|..||+++|+|..+..+..++++|.|+.|.|.+||+...++||..++..|-
T Consensus 347 wh~KLGNIKtL~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vdYRTKVLa~FG 426 (490)
T KOG1259|consen 347 WHLKLGNIKTLKLAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVDYRTKVLARFG 426 (490)
T ss_pred hHhhhcCEeeeehhhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccchHHHHHHHHHh
Confidence 87778999999999999999999999999999999999999999888999999999999999999999999999987764
Q ss_pred -CCceeecCCCccChHHHHHHHHHHH
Q 002014 311 -HPAKLKVDGKEISTRELWERQLIIA 335 (982)
Q Consensus 311 -~L~lL~LdgN~Is~~e~~~~~~l~~ 335 (982)
.-..+.||+.+-+..+.....+..+
T Consensus 427 ERaSE~~LD~~~~~~~ELDTV~Vl~A 452 (490)
T KOG1259|consen 427 ERASEISLDNEPGNQQELDTVLVLSA 452 (490)
T ss_pred hhhhheecCCCCcchhhhhHHHHHHH
Confidence 3678899999998888777665543
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.66 E-value=1.6e-17 Score=198.60 Aligned_cols=270 Identities=21% Similarity=0.164 Sum_probs=201.2
Q ss_pred hcCCcEEEecCCCccchHhhhhcccccccccCCCCccccccccccCCCCCCchhhHHHhcCCCCCcEEEccCCCCCCCCC
Q 002014 25 IEGSIVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTP 104 (982)
Q Consensus 25 L~sl~~L~L~~~~L~~Lp~~L~~L~~Le~L~~~~~~~~l~l~~LdLs~n~~L~~Lp~~L~~L~~Lk~L~Ls~N~L~~~iP 104 (982)
-..++.++++.+.+..+|+.+..+.+|+.+.. ..| .+..+|..+...++|+.|.+..|.+. -+|
T Consensus 240 p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~--------------n~N-~l~~lp~ri~~~~~L~~l~~~~nel~-yip 303 (1081)
T KOG0618|consen 240 PLNLQYLDISHNNLSNLPEWIGACANLEALNA--------------NHN-RLVALPLRISRITSLVSLSAAYNELE-YIP 303 (1081)
T ss_pred cccceeeecchhhhhcchHHHHhcccceEecc--------------cch-hHHhhHHHHhhhhhHHHHHhhhhhhh-hCC
Confidence 34456666777777777766666666555443 333 34667777888888888888888887 455
Q ss_pred cCCCCCCCccEEEeeCCCCCccchhhHHhhhh-hhHhhhccCCCccchhhcccchhcccCCCCCCCccEEEccCCccc-c
Q 002014 105 LSLLPFCRLKVLELRGCDLSTSAAKGLLELRH-TLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLV-I 182 (982)
Q Consensus 105 ~sf~~L~nL~~LdLS~N~Lss~~p~~L~~L~~-LLeLLL~~N~L~~L~~l~~~~l~~L~~l~~L~~Lq~LdLS~N~Lt-~ 182 (982)
.....++.|++|+|..|+|...++..+.-+.. +..+..+.|.+..++..-. ..++.|+.|.|.+|.|+ .
T Consensus 304 ~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e---------~~~~~Lq~LylanN~Ltd~ 374 (1081)
T KOG0618|consen 304 PFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEE---------NNHAALQELYLANNHLTDS 374 (1081)
T ss_pred CcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccc---------hhhHHHHHHHHhcCccccc
Confidence 56777899999999999997744433333332 2333345555544442111 23567999999999999 4
Q ss_pred chhhcCCCCCCCEEEcCCCCCCCCC--CcCCCCCCCEEEcCCCCCCCccccccccccceeecccCCcCCCcccCCCCCCC
Q 002014 183 MDESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGIENLKSL 260 (982)
Q Consensus 183 LP~sL~~L~~L~~LdLS~N~Lt~l~--~L~~L~sL~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~N~Ls~L~~L~~L~sL 260 (982)
.-+.+-++++|+.|+|++|+|..+| .+.++..|++|+||+|+++.++.....++.|++|...+|+|..+|.+..++.|
T Consensus 375 c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL 454 (1081)
T KOG0618|consen 375 CFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQL 454 (1081)
T ss_pred chhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeechhhhhcCcc
Confidence 4456788999999999999999987 68999999999999999999998887889999999999999999999999999
Q ss_pred CEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchhHhhhcCCCceeecCCCccC
Q 002014 261 EGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIS 323 (982)
Q Consensus 261 ~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~~~r~~v~~~l~~L~lL~LdgN~Is 323 (982)
+.+||+.|+|+.... ......|+|++|+|+||..... ....+..++.+...+++-++..
T Consensus 455 ~~lDlS~N~L~~~~l-~~~~p~p~LkyLdlSGN~~l~~---d~~~l~~l~~l~~~~i~~~~~~ 513 (1081)
T KOG0618|consen 455 KVLDLSCNNLSEVTL-PEALPSPNLKYLDLSGNTRLVF---DHKTLKVLKSLSQMDITLNNTP 513 (1081)
T ss_pred eEEecccchhhhhhh-hhhCCCcccceeeccCCccccc---chhhhHHhhhhhheecccCCCC
Confidence 999999999997643 2223338999999999995422 2355667777777777777443
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.65 E-value=4.8e-16 Score=190.25 Aligned_cols=237 Identities=20% Similarity=0.143 Sum_probs=171.9
Q ss_pred hcCCcEEEecCCCccchHhhhhcccccccccCC---CCccccccccccCCCCCCchhhHHHhcCCCCCcEEEccCCCCCC
Q 002014 25 IEGSIVLKLNPAGLHYVQSRLEALRELERLLAG---APLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARD 101 (982)
Q Consensus 25 L~sl~~L~L~~~~L~~Lp~~L~~L~~Le~L~~~---~~~~~l~l~~LdLs~n~~L~~Lp~~L~~L~~Lk~L~Ls~N~L~~ 101 (982)
..++..|.+..|.|..||..+.+|+.|..-... .|.....+..+++++|. +..+|.. .++|+.|+|.+|+++.
T Consensus 221 ~~~L~~L~L~~N~Lt~LP~lp~~Lk~LdLs~N~LtsLP~lp~sL~~L~Ls~N~-L~~Lp~l---p~~L~~L~Ls~N~Lt~ 296 (788)
T PRK15387 221 PAHITTLVIPDNNLTSLPALPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNP-LTHLPAL---PSGLCKLWIFGNQLTS 296 (788)
T ss_pred hcCCCEEEccCCcCCCCCCCCCCCcEEEecCCccCcccCcccccceeeccCCc-hhhhhhc---hhhcCEEECcCCcccc
Confidence 345688999999999888754444433321100 00001123456666664 4556653 3567888888888874
Q ss_pred CCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhccCCCccchhhcccchhcccCCCCCCCccEEEccCCccc
Q 002014 102 PTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLV 181 (982)
Q Consensus 102 ~iP~sf~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N~L~~L~~l~~~~l~~L~~l~~L~~Lq~LdLS~N~Lt 181 (982)
+|. .+++|+.|+|++|+|++ +|.... .|..+.+.+|.+..++.+ ..+|++|+|++|+|+
T Consensus 297 -LP~---~p~~L~~LdLS~N~L~~-Lp~lp~---~L~~L~Ls~N~L~~LP~l-------------p~~Lq~LdLS~N~Ls 355 (788)
T PRK15387 297 -LPV---LPPGLQELSVSDNQLAS-LPALPS---ELCKLWAYNNQLTSLPTL-------------PSGLQELSVSDNQLA 355 (788)
T ss_pred -ccc---cccccceeECCCCcccc-CCCCcc---cccccccccCcccccccc-------------ccccceEecCCCccC
Confidence 343 24788999999998887 343222 233455667766555431 137999999999999
Q ss_pred cchhhcCCCCCCCEEEcCCCCCCCCCCcCCCCCCCEEEcCCCCCCCccccccccccceeecccCCcCCCcccCCCCCCCC
Q 002014 182 IMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGIENLKSLE 261 (982)
Q Consensus 182 ~LP~sL~~L~~L~~LdLS~N~Lt~l~~L~~L~sL~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~N~Ls~L~~L~~L~sL~ 261 (982)
.+|.. .++|+.|++++|+|+.+|.+ ..+|+.|+|++|.|+.+|... ++|+.|+|++|+|+.+|.+ ..+|+
T Consensus 356 ~LP~l---p~~L~~L~Ls~N~L~~LP~l--~~~L~~LdLs~N~Lt~LP~l~---s~L~~LdLS~N~LssIP~l--~~~L~ 425 (788)
T PRK15387 356 SLPTL---PSELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRLTSLPVLP---SELKELMVSGNRLTSLPML--PSGLL 425 (788)
T ss_pred CCCCC---CcccceehhhccccccCccc--ccccceEEecCCcccCCCCcc---cCCCEEEccCCcCCCCCcc--hhhhh
Confidence 99863 45788999999999998754 368999999999999887643 6799999999999998754 45789
Q ss_pred EEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCC
Q 002014 262 GLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCS 298 (982)
Q Consensus 262 ~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~ 298 (982)
.|+|++|+|+.+| ..+..+++|+.|+|++|+|++.
T Consensus 426 ~L~Ls~NqLt~LP--~sl~~L~~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 426 SLSVYRNQLTRLP--ESLIHLSSETTVNLEGNPLSER 460 (788)
T ss_pred hhhhccCcccccC--hHHhhccCCCeEECCCCCCCch
Confidence 9999999999998 5688999999999999999855
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.64 E-value=2.8e-17 Score=196.57 Aligned_cols=253 Identities=22% Similarity=0.223 Sum_probs=177.4
Q ss_pred CcEEEecCCCccchHhhhhcccccccccCCCCccccccccccCCCCCCchhhHHHhcCCCCCcEEEccCCCCCCCCCcCC
Q 002014 28 SIVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSL 107 (982)
Q Consensus 28 l~~L~L~~~~L~~Lp~~L~~L~~Le~L~~~~~~~~l~l~~LdLs~n~~L~~Lp~~L~~L~~Lk~L~Ls~N~L~~~iP~sf 107 (982)
++.|+++++.+...|..+..+.+|+.+... + +.+..+|..+.++.+|++|+|.+|.+. ..|..+
T Consensus 47 L~~l~lsnn~~~~fp~~it~l~~L~~ln~s--------------~-n~i~~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~ 110 (1081)
T KOG0618|consen 47 LKSLDLSNNQISSFPIQITLLSHLRQLNLS--------------R-NYIRSVPSSCSNMRNLQYLNLKNNRLQ-SLPASI 110 (1081)
T ss_pred eEEeeccccccccCCchhhhHHHHhhcccc--------------h-hhHhhCchhhhhhhcchhheeccchhh-cCchhH
Confidence 789999999999999999888888876543 2 235556666667777777777666554 566667
Q ss_pred CCCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhccC-----------------------------------------C
Q 002014 108 LPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHN-----------------------------------------S 146 (982)
Q Consensus 108 ~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N-----------------------------------------~ 146 (982)
..+.+|++|+++.|.+.. +|..+..+..+.++..++| .
T Consensus 111 ~~lknl~~LdlS~N~f~~-~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~ 189 (1081)
T KOG0618|consen 111 SELKNLQYLDLSFNHFGP-IPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNE 189 (1081)
T ss_pred HhhhcccccccchhccCC-CchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccch
Confidence 777777777777777654 5555555555555555544 2
Q ss_pred Cccchhhccc----------chh--------------------cccCCCCCCCccEEEccCCccccchhhcCCCCCCCEE
Q 002014 147 TNALRHVFAS----------RIV--------------------EIKDSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETL 196 (982)
Q Consensus 147 L~~L~~l~~~----------~l~--------------------~L~~l~~L~~Lq~LdLS~N~Lt~LP~sL~~L~~L~~L 196 (982)
+..+.-.... .+. .+...+.-.+|++++++.|+++.+|.++..+.+|+.|
T Consensus 190 ~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l 269 (1081)
T KOG0618|consen 190 MEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEAL 269 (1081)
T ss_pred hhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEe
Confidence 1100000000 000 0001122357888999999999999999999999999
Q ss_pred EcCCCCCCCC-----------------------C-CcCCCCCCCEEEcCCCCCCCcccccc-------------------
Q 002014 197 DLSRNKFAKV-----------------------D-NLRKCVNLKHLDLGFNNLRSIAAFSE------------------- 233 (982)
Q Consensus 197 dLS~N~Lt~l-----------------------~-~L~~L~sL~~LdLS~N~Ls~L~~l~~------------------- 233 (982)
.+.+|+|+.+ + .+..++.|++|+|..|+|..+|..+.
T Consensus 270 ~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~ 349 (1081)
T KOG0618|consen 270 NANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLST 349 (1081)
T ss_pred cccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccc
Confidence 9988887642 2 34457889999999998887764211
Q ss_pred -------ccccceeecccCCcCCC--cccCCCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCC
Q 002014 234 -------VSCHIVKLVLRNNALTT--LRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCS 298 (982)
Q Consensus 234 -------~L~sL~~L~Ls~N~Ls~--L~~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~ 298 (982)
.++.|+.|.|.+|.|++ +|.+.++++|+.|+|++|+|..+|. ..+.+++.|+.|+|+||.++..
T Consensus 350 lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpa-s~~~kle~LeeL~LSGNkL~~L 422 (1081)
T KOG0618|consen 350 LPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPA-SKLRKLEELEELNLSGNKLTTL 422 (1081)
T ss_pred cccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCH-HHHhchHHhHHHhcccchhhhh
Confidence 12467788888888887 5788899999999999999999987 6788999999999999998754
No 17
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.58 E-value=4.1e-16 Score=172.89 Aligned_cols=254 Identities=18% Similarity=0.180 Sum_probs=184.2
Q ss_pred EEEecCCCccchHhhhhcccccccccCCCCccccccccccCCCCCCchhhH-HHhcCCCCCcEEEccCCCCCCCCCcCCC
Q 002014 30 VLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLR-RILKLLTSLKVVSALPPPARDPTPLSLL 108 (982)
Q Consensus 30 ~L~L~~~~L~~Lp~~L~~L~~Le~L~~~~~~~~l~l~~LdLs~n~~L~~Lp-~~L~~L~~Lk~L~Ls~N~L~~~iP~sf~ 108 (982)
..+-+..+|.++|..++- . ...+.|-.|. +..|| ..|..+++|+.|+|++|.|+.+.|.+|.
T Consensus 50 ~VdCr~~GL~eVP~~LP~-------------~---tveirLdqN~-I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~ 112 (498)
T KOG4237|consen 50 IVDCRGKGLTEVPANLPP-------------E---TVEIRLDQNQ-ISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFK 112 (498)
T ss_pred eEEccCCCcccCcccCCC-------------c---ceEEEeccCC-cccCChhhccchhhhceecccccchhhcChHhhh
Confidence 455566677776654321 1 1123444454 44454 5899999999999999999999999999
Q ss_pred CCCCccEEEeeC-CCCCccchhhHHhhhhhhHhhhccCCCccchhhcccch-------------hccc--CCCCCCCccE
Q 002014 109 PFCRLKVLELRG-CDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRI-------------VEIK--DSPQWNRLSF 172 (982)
Q Consensus 109 ~L~nL~~LdLS~-N~Lss~~p~~L~~L~~LLeLLL~~N~L~~L~~l~~~~l-------------~~L~--~l~~L~~Lq~ 172 (982)
++++|..|-+.+ |+|+.+.-..|.+|..++.+++.-|++..++...+..+ ..+. .+..+..++.
T Consensus 113 GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~t 192 (498)
T KOG4237|consen 113 GLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKT 192 (498)
T ss_pred hhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccch
Confidence 999988887666 99999878889999998888888887766554333322 2222 1345678888
Q ss_pred EEccCCccc---cc----------hhhcCCCCCCCEEEcCCC--------------------------CCCCCC--CcCC
Q 002014 173 VSCSCNRLV---IM----------DESLQLLPAVETLDLSRN--------------------------KFAKVD--NLRK 211 (982)
Q Consensus 173 LdLS~N~Lt---~L----------P~sL~~L~~L~~LdLS~N--------------------------~Lt~l~--~L~~ 211 (982)
+.+..|.+- .+ |..++...-.....+.++ .....| .|..
T Consensus 193 lhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~ 272 (498)
T KOG4237|consen 193 LHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKK 272 (498)
T ss_pred HhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhh
Confidence 888888732 12 112222221111111111 111112 5788
Q ss_pred CCCCCEEEcCCCCCCCccc-cccccccceeecccCCcCCCcc--cCCCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEE
Q 002014 212 CVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNL 288 (982)
Q Consensus 212 L~sL~~LdLS~N~Ls~L~~-l~~~L~sL~~L~Ls~N~Ls~L~--~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L 288 (982)
+++|+.|+|++|+|+.+.. .+..+..|+.|.|..|+|..+. .|.++..|+.|+|.+|+|+.+.+ ..+..+..|..|
T Consensus 273 L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~-~aF~~~~~l~~l 351 (498)
T KOG4237|consen 273 LPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAP-GAFQTLFSLSTL 351 (498)
T ss_pred cccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEec-ccccccceeeee
Confidence 9999999999999999876 5666789999999999999984 78999999999999999999876 667888999999
Q ss_pred EecCCCCCCCccc
Q 002014 289 WLEGNPLCCSRWY 301 (982)
Q Consensus 289 ~LsgNpLs~~~~~ 301 (982)
+|-+||+.|.|.+
T Consensus 352 ~l~~Np~~CnC~l 364 (498)
T KOG4237|consen 352 NLLSNPFNCNCRL 364 (498)
T ss_pred ehccCcccCccch
Confidence 9999999999843
No 18
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.56 E-value=2.7e-14 Score=184.33 Aligned_cols=270 Identities=17% Similarity=0.181 Sum_probs=155.0
Q ss_pred cCCcEEEecCCCccchHhhhhcccccccccCCC-C--------ccccccccccCCCCCCchhhHHHhcCCCCCcEEEccC
Q 002014 26 EGSIVLKLNPAGLHYVQSRLEALRELERLLAGA-P--------LDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALP 96 (982)
Q Consensus 26 ~sl~~L~L~~~~L~~Lp~~L~~L~~Le~L~~~~-~--------~~~l~l~~LdLs~n~~L~~Lp~~L~~L~~Lk~L~Ls~ 96 (982)
..+++|.+..+.+..+|..+ .+.+|..|.... . .....+..++|+++..++.+|. +..+++|+.|+|.+
T Consensus 589 ~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~ 666 (1153)
T PLN03210 589 PKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSD 666 (1153)
T ss_pred cccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecC
Confidence 44566666666666666554 233343333211 0 0122334556666666666664 56677777777776
Q ss_pred CCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhccCC-CccchhhcccchhcccCCCCCCCccEEEc
Q 002014 97 PPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNS-TNALRHVFASRIVEIKDSPQWNRLSFVSC 175 (982)
Q Consensus 97 N~L~~~iP~sf~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N~-L~~L~~l~~~~l~~L~~l~~L~~Lq~LdL 175 (982)
|.....+|..+..+++|+.|+|++|.....+|..+ ++++|..+.+.+|. +..++. ...+|+.|++
T Consensus 667 c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~-------------~~~nL~~L~L 732 (1153)
T PLN03210 667 CSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD-------------ISTNISWLDL 732 (1153)
T ss_pred CCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc-------------ccCCcCeeec
Confidence 66556666667777777777777654334345433 45555555554442 111111 0123444444
Q ss_pred cCCccccchhh------------------------------cCCCCCCCEEEcCCCC-CCCCC-CcCCCCCCCEEEcCCC
Q 002014 176 SCNRLVIMDES------------------------------LQLLPAVETLDLSRNK-FAKVD-NLRKCVNLKHLDLGFN 223 (982)
Q Consensus 176 S~N~Lt~LP~s------------------------------L~~L~~L~~LdLS~N~-Lt~l~-~L~~L~sL~~LdLS~N 223 (982)
++|.+..+|.. ...+++|+.|+|++|. +..+| .+.++++|+.|+|++|
T Consensus 733 ~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C 812 (1153)
T PLN03210 733 DETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENC 812 (1153)
T ss_pred CCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCC
Confidence 44444433321 1123467777777764 33354 6777888888888876
Q ss_pred -CCCCccccccccccceeecccCC-cCCCcccCCCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecC-CCCCCCcc
Q 002014 224 -NLRSIAAFSEVSCHIVKLVLRNN-ALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEG-NPLCCSRW 300 (982)
Q Consensus 224 -~Ls~L~~l~~~L~sL~~L~Ls~N-~Ls~L~~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~Lsg-NpLs~~~~ 300 (982)
.+..+|... .+++|+.|+|++| .+..++.+ ..+|+.|+|++|.|+.+| ..+..+++|+.|+|++ |.+...+.
T Consensus 813 ~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~--~~nL~~L~Ls~n~i~~iP--~si~~l~~L~~L~L~~C~~L~~l~~ 887 (1153)
T PLN03210 813 INLETLPTGI-NLESLESLDLSGCSRLRTFPDI--STNISDLNLSRTGIEEVP--WWIEKFSNLSFLDMNGCNNLQRVSL 887 (1153)
T ss_pred CCcCeeCCCC-CccccCEEECCCCCcccccccc--ccccCEeECCCCCCccCh--HHHhcCCCCCEEECCCCCCcCccCc
Confidence 466666543 4678888888876 44444433 357888888888888876 4677888888888887 44554331
Q ss_pred cchhHhhhcCCCceeecCCC
Q 002014 301 YRAQVFSYFAHPAKLKVDGK 320 (982)
Q Consensus 301 ~r~~v~~~l~~L~lL~LdgN 320 (982)
.+..++.|+.+.+.++
T Consensus 888 ----~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 888 ----NISKLKHLETVDFSDC 903 (1153)
T ss_pred ----ccccccCCCeeecCCC
Confidence 1334556666666655
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.55 E-value=3.2e-15 Score=183.65 Aligned_cols=229 Identities=20% Similarity=0.240 Sum_probs=174.5
Q ss_pred hhcCCcEEEecCCCccchHhhhhcccccccccCCCCccccccccccCCCCCCchhhHHHhcCCCCCcEEEccCCCCCCCC
Q 002014 24 LIEGSIVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPT 103 (982)
Q Consensus 24 lL~sl~~L~L~~~~L~~Lp~~L~~L~~Le~L~~~~~~~~l~l~~LdLs~n~~L~~Lp~~L~~L~~Lk~L~Ls~N~L~~~i 103 (982)
+...+..|+++.|.|..||..+. .+|+ .+++++|. +..+|..+. ++|+.|+|++|.+. .+
T Consensus 197 Ip~~L~~L~Ls~N~LtsLP~~l~--~nL~--------------~L~Ls~N~-LtsLP~~l~--~~L~~L~Ls~N~L~-~L 256 (754)
T PRK15370 197 IPEQITTLILDNNELKSLPENLQ--GNIK--------------TLYANSNQ-LTSIPATLP--DTIQEMELSINRIT-EL 256 (754)
T ss_pred cccCCcEEEecCCCCCcCChhhc--cCCC--------------EEECCCCc-cccCChhhh--ccccEEECcCCccC-cC
Confidence 44567899999999999887543 2333 35566664 456776543 57999999999998 55
Q ss_pred CcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhccCCCccchhhcccchhcccCCCCCCCccEEEccCCccccc
Q 002014 104 PLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIM 183 (982)
Q Consensus 104 P~sf~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N~L~~L~~l~~~~l~~L~~l~~L~~Lq~LdLS~N~Lt~L 183 (982)
|..+. .+|+.|+|++|+|+. +|..+. .+|..+.+.+|++..++..++ ++|+.|++++|.|+.+
T Consensus 257 P~~l~--s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp------------~sL~~L~Ls~N~Lt~L 319 (754)
T PRK15370 257 PERLP--SALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIRTLPAHLP------------SGITHLNVQSNSLTAL 319 (754)
T ss_pred ChhHh--CCCCEEECcCCccCc-cccccC--CCCcEEECCCCccccCcccch------------hhHHHHHhcCCccccC
Confidence 65553 589999999999986 565553 356777788888776654322 3688999999999988
Q ss_pred hhhcCCCCCCCEEEcCCCCCCCCCC-cCCCCCCCEEEcCCCCCCCccccccccccceeecccCCcCCCcc-cCCCCCCCC
Q 002014 184 DESLQLLPAVETLDLSRNKFAKVDN-LRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLR-GIENLKSLE 261 (982)
Q Consensus 184 P~sL~~L~~L~~LdLS~N~Lt~l~~-L~~L~sL~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~N~Ls~L~-~L~~L~sL~ 261 (982)
|..+ .++|+.|++++|.++.+|. + .++|+.|+|++|+|+.+|... .+.|+.|+|++|.|+.+| .+. ..|+
T Consensus 320 P~~l--~~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N~Lt~LP~~l~--~sL~ 391 (754)
T PRK15370 320 PETL--PPGLKTLEAGENALTSLPASL--PPELQVLDVSKNQITVLPETL--PPTITTLDVSRNALTNLPENLP--AALQ 391 (754)
T ss_pred Cccc--cccceeccccCCccccCChhh--cCcccEEECCCCCCCcCChhh--cCCcCEEECCCCcCCCCCHhHH--HHHH
Confidence 8654 3689999999999998873 3 278999999999999887633 368999999999999886 332 4799
Q ss_pred EEECcCCCCCCCchh--hhhcCCCCCcEEEecCCCCCC
Q 002014 262 GLDISYNIISTFSEL--EFLASLPYLLNLWLEGNPLCC 297 (982)
Q Consensus 262 ~LdLS~N~Ls~l~~l--~~L~~Lp~L~~L~LsgNpLs~ 297 (982)
.|++++|+|+.+|.. ..+..++.+..|+|.+|||..
T Consensus 392 ~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls~ 429 (754)
T PRK15370 392 IMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFSE 429 (754)
T ss_pred HHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCccH
Confidence 999999999988741 233456889999999999973
No 20
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.54 E-value=4.9e-14 Score=181.98 Aligned_cols=231 Identities=19% Similarity=0.150 Sum_probs=174.8
Q ss_pred ccccccCCCCCCchhhHHHhcCCCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhc
Q 002014 64 RAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIIC 143 (982)
Q Consensus 64 ~l~~LdLs~n~~L~~Lp~~L~~L~~Lk~L~Ls~N~L~~~iP~sf~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~ 143 (982)
.+..+++.++. +..+|..+..+++|+.|+|+++.....+|. +..+++|+.|+|++|.....+|..+..+++|..+.+.
T Consensus 612 ~L~~L~L~~s~-l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~ 689 (1153)
T PLN03210 612 NLVKLQMQGSK-LEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMS 689 (1153)
T ss_pred CCcEEECcCcc-ccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCC
Confidence 34568888775 677888889999999999998776556664 8889999999999987767789899999988888887
Q ss_pred cC-CCccchhhcccchhcccCCCCCCCccEEEccCCc-cccchhhcCCCCCCCEEEcCCCCCCCCCCcCC----------
Q 002014 144 HN-STNALRHVFASRIVEIKDSPQWNRLSFVSCSCNR-LVIMDESLQLLPAVETLDLSRNKFAKVDNLRK---------- 211 (982)
Q Consensus 144 ~N-~L~~L~~l~~~~l~~L~~l~~L~~Lq~LdLS~N~-Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~~L~~---------- 211 (982)
+| .+..++. ...+++|+.|++++|. +..+|.. .++|+.|+|++|.+..+|....
T Consensus 690 ~c~~L~~Lp~-----------~i~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~ 755 (1153)
T PLN03210 690 RCENLEILPT-----------GINLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFPSNLRLENLDELILC 755 (1153)
T ss_pred CCCCcCccCC-----------cCCCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCcccccccccccccccccccc
Confidence 65 3333332 1246789999999885 4455542 4678999999998877652111
Q ss_pred ---------------------CCCCCEEEcCCCC-CCCccccccccccceeecccCC-cCCCcccCCCCCCCCEEECcCC
Q 002014 212 ---------------------CVNLKHLDLGFNN-LRSIAAFSEVSCHIVKLVLRNN-ALTTLRGIENLKSLEGLDISYN 268 (982)
Q Consensus 212 ---------------------L~sL~~LdLS~N~-Ls~L~~l~~~L~sL~~L~Ls~N-~Ls~L~~L~~L~sL~~LdLS~N 268 (982)
+++|+.|+|++|. +..+|..+..+++|+.|+|++| .+..+|....+++|+.|+|++|
T Consensus 756 ~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c 835 (1153)
T PLN03210 756 EMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGC 835 (1153)
T ss_pred ccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCC
Confidence 2467777888774 4457766777899999999987 5777775558899999999987
Q ss_pred -CCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchhHhhhcCCCceeecCC
Q 002014 269 -IISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDG 319 (982)
Q Consensus 269 -~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~~~r~~v~~~l~~L~lL~Ldg 319 (982)
.+..+|. ..++|+.|+|++|.+...+ ..+..++.|+.+.|.+
T Consensus 836 ~~L~~~p~-----~~~nL~~L~Ls~n~i~~iP----~si~~l~~L~~L~L~~ 878 (1153)
T PLN03210 836 SRLRTFPD-----ISTNISDLNLSRTGIEEVP----WWIEKFSNLSFLDMNG 878 (1153)
T ss_pred Cccccccc-----cccccCEeECCCCCCccCh----HHHhcCCCCCEEECCC
Confidence 4555542 2468999999999998654 3466788899999988
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.53 E-value=9.2e-16 Score=154.31 Aligned_cols=128 Identities=23% Similarity=0.324 Sum_probs=67.7
Q ss_pred CccEEEccCCccccchhhcCCCCCCCEEEcCCCCCCCCC-CcCCCCCCCEEEcCCCCCC--CccccccccccceeecccC
Q 002014 169 RLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD-NLRKCVNLKHLDLGFNNLR--SIAAFSEVSCHIVKLVLRN 245 (982)
Q Consensus 169 ~Lq~LdLS~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~-~L~~L~sL~~LdLS~N~Ls--~L~~l~~~L~sL~~L~Ls~ 245 (982)
+|+.|++++|+|+.+|..++.++.|+.|+++-|++..+| .|+.++.|+.|||++|++. .+|..+..+..|+.|.|+.
T Consensus 57 nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~d 136 (264)
T KOG0617|consen 57 NLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGD 136 (264)
T ss_pred hhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcC
Confidence 344444444444444444445555555555555444443 4555555555555555443 2444444445555556666
Q ss_pred CcCCCcc-cCCCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCC
Q 002014 246 NALTTLR-GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCS 298 (982)
Q Consensus 246 N~Ls~L~-~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~ 298 (982)
|.+.-+| .++.+++|+.|.+..|.+-.+| ..++.+..|+.|.+.||.++-.
T Consensus 137 ndfe~lp~dvg~lt~lqil~lrdndll~lp--keig~lt~lrelhiqgnrl~vl 188 (264)
T KOG0617|consen 137 NDFEILPPDVGKLTNLQILSLRDNDLLSLP--KEIGDLTRLRELHIQGNRLTVL 188 (264)
T ss_pred CCcccCChhhhhhcceeEEeeccCchhhCc--HHHHHHHHHHHHhcccceeeec
Confidence 5555543 5556666666666666655555 4455666666666666666543
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.53 E-value=2.2e-14 Score=157.93 Aligned_cols=89 Identities=25% Similarity=0.229 Sum_probs=38.0
Q ss_pred cceeecccCCcCCCc------ccCCCCCCCCEEECcCCCCCCCchhhhhc----CCCCCcEEEecCCCCCCCcc-cchhH
Q 002014 237 HIVKLVLRNNALTTL------RGIENLKSLEGLDISYNIISTFSELEFLA----SLPYLLNLWLEGNPLCCSRW-YRAQV 305 (982)
Q Consensus 237 sL~~L~Ls~N~Ls~L------~~L~~L~sL~~LdLS~N~Ls~l~~l~~L~----~Lp~L~~L~LsgNpLs~~~~-~r~~v 305 (982)
+|+.|+|++|.++.. ..+..+++|++|++++|.+++........ ..+.|+.|++++|.++.... .....
T Consensus 194 ~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~ 273 (319)
T cd00116 194 NLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEV 273 (319)
T ss_pred CCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHH
Confidence 455555555544431 12344455555555555555421111111 12455555555555542210 01112
Q ss_pred hhhcCCCceeecCCCccChH
Q 002014 306 FSYFAHPAKLKVDGKEISTR 325 (982)
Q Consensus 306 ~~~l~~L~lL~LdgN~Is~~ 325 (982)
+..++.++.+++++|.++..
T Consensus 274 ~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 274 LAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred HhcCCCccEEECCCCCCcHH
Confidence 23334455555555555544
No 23
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.53 E-value=3.6e-15 Score=153.48 Aligned_cols=156 Identities=29% Similarity=0.422 Sum_probs=66.4
Q ss_pred CccccchhhcCCCCCCCEEEcCCCCCCCCCCcC-CCCCCCEEEcCCCCCCCccccccccccceeecccCCcCCCcc-cC-
Q 002014 178 NRLVIMDESLQLLPAVETLDLSRNKFAKVDNLR-KCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLR-GI- 254 (982)
Q Consensus 178 N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~~L~-~L~sL~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~N~Ls~L~-~L- 254 (982)
+.|..+| .+.+...+++|+|.+|.|+.++.++ .+.+|+.|+|++|.|+.+..+. .++.|+.|++++|+|+.+. .+
T Consensus 7 ~~i~~~~-~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~-~L~~L~~L~L~~N~I~~i~~~l~ 84 (175)
T PF14580_consen 7 NMIEQIA-QYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEGLP-GLPRLKTLDLSNNRISSISEGLD 84 (175)
T ss_dssp ------------------------------S--TT-TT--EEE-TTS--S--TT-----TT--EEE--SS---S-CHHHH
T ss_pred ccccccc-ccccccccccccccccccccccchhhhhcCCCEEECCCCCCccccCcc-ChhhhhhcccCCCCCCccccchH
Confidence 3444443 2334446777778888877777766 4677888888888877776543 3577888888888888774 34
Q ss_pred CCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchhHhhhcCCCceeecCCCccChHHHHHHHHHH
Q 002014 255 ENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTRELWERQLII 334 (982)
Q Consensus 255 ~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~~~r~~v~~~l~~L~lL~LdgN~Is~~e~~~~~~l~ 334 (982)
..+++|+.|+|++|+|.++..+..+..+++|+.|+|.+||++..+.||..++..++. +..||+.+|+..|+..+..+|
T Consensus 85 ~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~--Lk~LD~~~V~~~ER~~A~~~f 162 (175)
T PF14580_consen 85 KNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPS--LKVLDGQDVTEEERQEAEKLF 162 (175)
T ss_dssp HH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT---SEETTEETTS-B--------
T ss_pred HhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcCh--hheeCCEEccHHHhccccccc
Confidence 358899999999999999888888999999999999999999999999999888755 556799999999999988887
Q ss_pred Hhh
Q 002014 335 ARR 337 (982)
Q Consensus 335 ~~~ 337 (982)
..+
T Consensus 163 ~~~ 165 (175)
T PF14580_consen 163 KGK 165 (175)
T ss_dssp ---
T ss_pred ccc
Confidence 665
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.50 E-value=2.4e-14 Score=157.58 Aligned_cols=258 Identities=23% Similarity=0.179 Sum_probs=163.0
Q ss_pred CCcEEEecCCCc-----cchHhhhhcccccccccCCCCccccccccccCCC-CCCchhhHHHhcCCCCCcEEEccCCCCC
Q 002014 27 GSIVLKLNPAGL-----HYVQSRLEALRELERLLAGAPLDYLRAYVSDLGD-HRALEQLRRILKLLTSLKVVSALPPPAR 100 (982)
Q Consensus 27 sl~~L~L~~~~L-----~~Lp~~L~~L~~Le~L~~~~~~~~l~l~~LdLs~-n~~L~~Lp~~L~~L~~Lk~L~Ls~N~L~ 100 (982)
.+..|.+..+.+ ..++..+...++|+.+... ...++. ...+..++..+..+++|+.|+|++|.+.
T Consensus 24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~---------~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 94 (319)
T cd00116 24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLS---------LNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALG 94 (319)
T ss_pred hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEecc---------ccccCCcchHHHHHHHHHHhcCceeEEEccCCCCC
Confidence 366777777776 3445555554444444321 011111 2234455666666777777777777776
Q ss_pred CCCCcCCCCCCC---ccEEEeeCCCCCccchhhHHhhhhhhHhhhccCCCccchhhcccchhcccCCCCC-CCccEEEcc
Q 002014 101 DPTPLSLLPFCR---LKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQW-NRLSFVSCS 176 (982)
Q Consensus 101 ~~iP~sf~~L~n---L~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N~L~~L~~l~~~~l~~L~~l~~L-~~Lq~LdLS 176 (982)
...+..+..+.+ |++|+|++|.++......+... +..+ ++|+.|+++
T Consensus 95 ~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~-----------------------------l~~~~~~L~~L~L~ 145 (319)
T cd00116 95 PDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKG-----------------------------LKDLPPALEKLVLG 145 (319)
T ss_pred hhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHH-----------------------------HHhCCCCceEEEcC
Confidence 555554444444 7777777777764111111100 0123 578999999
Q ss_pred CCccc-----cchhhcCCCCCCCEEEcCCCCCCC-----C-CCcCCCCCCCEEEcCCCCCCCcc-----cccccccccee
Q 002014 177 CNRLV-----IMDESLQLLPAVETLDLSRNKFAK-----V-DNLRKCVNLKHLDLGFNNLRSIA-----AFSEVSCHIVK 240 (982)
Q Consensus 177 ~N~Lt-----~LP~sL~~L~~L~~LdLS~N~Lt~-----l-~~L~~L~sL~~LdLS~N~Ls~L~-----~l~~~L~sL~~ 240 (982)
+|.++ .++..+..++.|+.|+|++|.++. + ..+..+++|+.|+|++|.+.... .....+++|+.
T Consensus 146 ~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~ 225 (319)
T cd00116 146 RNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEV 225 (319)
T ss_pred CCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCE
Confidence 99888 444567777889999999998884 1 24556678999999999886432 23444678999
Q ss_pred ecccCCcCCCc--cc-----CCCCCCCCEEECcCCCCCCCch---hhhhcCCCCCcEEEecCCCCCCCccc-chhHhhhc
Q 002014 241 LVLRNNALTTL--RG-----IENLKSLEGLDISYNIISTFSE---LEFLASLPYLLNLWLEGNPLCCSRWY-RAQVFSYF 309 (982)
Q Consensus 241 L~Ls~N~Ls~L--~~-----L~~L~sL~~LdLS~N~Ls~l~~---l~~L~~Lp~L~~L~LsgNpLs~~~~~-r~~v~~~l 309 (982)
|++++|.++.. .. ....+.|+.|++++|.|++... ...+..+++|+.+++++|++...... ...++..+
T Consensus 226 L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~ 305 (319)
T cd00116 226 LNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEP 305 (319)
T ss_pred EecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhc
Confidence 99999988862 11 1235789999999999874221 13456678999999999999866322 22334444
Q ss_pred -CCCceeecCCCcc
Q 002014 310 -AHPAKLKVDGKEI 322 (982)
Q Consensus 310 -~~L~lL~LdgN~I 322 (982)
+.++.+++.+|++
T Consensus 306 ~~~~~~~~~~~~~~ 319 (319)
T cd00116 306 GNELESLWVKDDSF 319 (319)
T ss_pred CCchhhcccCCCCC
Confidence 5678888887764
No 25
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.45 E-value=9.5e-16 Score=154.24 Aligned_cols=176 Identities=23% Similarity=0.309 Sum_probs=141.9
Q ss_pred cCCCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhccCCCccchhhcccchhcccC
Q 002014 84 KLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKD 163 (982)
Q Consensus 84 ~~L~~Lk~L~Ls~N~L~~~iP~sf~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N~L~~L~~l~~~~l~~L~~ 163 (982)
-.+.+++.|.|++|+++ .+|+.+..+.+|+.|++++|+|.. +|..+..
T Consensus 30 f~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie~-lp~~iss------------------------------ 77 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIEE-LPTSISS------------------------------ 77 (264)
T ss_pred cchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhhh-cChhhhh------------------------------
Confidence 34677777888888887 555667888888888888888865 4444433
Q ss_pred CCCCCCccEEEccCCccccchhhcCCCCCCCEEEcCCCCCCC--CC-CcCCCCCCCEEEcCCCCCCCcccccccccccee
Q 002014 164 SPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAK--VD-NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVK 240 (982)
Q Consensus 164 l~~L~~Lq~LdLS~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~--l~-~L~~L~sL~~LdLS~N~Ls~L~~l~~~L~sL~~ 240 (982)
+++|++|+++-|++..+|..|+.+|.|+.|||++|++.. +| .|..++.|+.|+|+.|.+.-+|+..+.+++|+.
T Consensus 78 ---l~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqi 154 (264)
T KOG0617|consen 78 ---LPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQI 154 (264)
T ss_pred ---chhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeE
Confidence 457899999999999999999999999999999999986 45 677889999999999999999998888999999
Q ss_pred ecccCCcCCCcc-cCCCCCCCCEEECcCCCCCCCchhhhhcCCC---CCcEEEecCCCCC
Q 002014 241 LVLRNNALTTLR-GIENLKSLEGLDISYNIISTFSELEFLASLP---YLLNLWLEGNPLC 296 (982)
Q Consensus 241 L~Ls~N~Ls~L~-~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp---~L~~L~LsgNpLs 296 (982)
|.++.|.+-.+| .++.+..|+.|.+.+|+++-+|+ .++.+. +-+.+.+..||+.
T Consensus 155 l~lrdndll~lpkeig~lt~lrelhiqgnrl~vlpp--el~~l~l~~~k~v~r~E~NPwv 212 (264)
T KOG0617|consen 155 LSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTVLPP--ELANLDLVGNKQVMRMEENPWV 212 (264)
T ss_pred EeeccCchhhCcHHHHHHHHHHHHhcccceeeecCh--hhhhhhhhhhHHHHhhhhCCCC
Confidence 999999988876 78899999999999999999884 344432 2234556667765
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=2.4e-14 Score=160.84 Aligned_cols=312 Identities=19% Similarity=0.166 Sum_probs=215.3
Q ss_pred cccchhHHHHHHHHHhhcCcchhcCCcEEEecCCCccchHhhhhcccccccccCCCCccccccccccCCCC----CCchh
Q 002014 3 IVTGDRYLEKLVKFVEQQAGPLIEGSIVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDH----RALEQ 78 (982)
Q Consensus 3 ~v~g~~~~~~lv~~l~~~~~~lL~sl~~L~L~~~~L~~Lp~~L~~L~~Le~L~~~~~~~~l~l~~LdLs~n----~~L~~ 78 (982)
+++|++||+..+ +..|+|++..++ ..-...+..+-+++-. .- +...+. -.++.+++- -.++.
T Consensus 47 ~vdgk~YF~~q~----P~GGSFik~~kV-~~p~d~~~t~~ery~e-----~~--s~~sd~--~~~~si~nK~vE~iGfDk 112 (505)
T KOG3207|consen 47 IVDGKRYFQTQH----PNGGSFIKPGKV-KFPTDLLRTFKERYYE-----KY--SYSSDL--ESVLSISNKQVEFIGFDK 112 (505)
T ss_pred eecceeeeeeec----CCCccccCCccC-CCCccHHHHHHHHHHH-----hh--cCCcch--hhHhhhcCceeEEecHHH
Confidence 578999999887 888999887741 1111111122222110 00 000000 011112211 12344
Q ss_pred hHHHhcCCCCCcEEEccCCCCCCCCC-cCCCCCCCccEEEeeCCCCCcc--chhhHHhhhhhhHhhhccCCCccchhhcc
Q 002014 79 LRRILKLLTSLKVVSALPPPARDPTP-LSLLPFCRLKVLELRGCDLSTS--AAKGLLELRHTLEKIICHNSTNALRHVFA 155 (982)
Q Consensus 79 Lp~~L~~L~~Lk~L~Ls~N~L~~~iP-~sf~~L~nL~~LdLS~N~Lss~--~p~~L~~L~~LLeLLL~~N~L~~L~~l~~ 155 (982)
+..--.++++|+.+.|.+..+....- .....+++++.|||++|-+... +..-...|++|..|.++.|.+........
T Consensus 113 i~akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~ 192 (505)
T KOG3207|consen 113 IAAKQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT 192 (505)
T ss_pred HHHHhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccc
Confidence 55556778899999998777652221 3556789999999999988752 33455678888888888886544332111
Q ss_pred cchhcccCCCCCCCccEEEccCCccc--cchhhcCCCCCCCEEEcCCCCCCCCC--CcCCCCCCCEEEcCCCCCCCccc-
Q 002014 156 SRIVEIKDSPQWNRLSFVSCSCNRLV--IMDESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAA- 230 (982)
Q Consensus 156 ~~l~~L~~l~~L~~Lq~LdLS~N~Lt--~LP~sL~~L~~L~~LdLS~N~Lt~l~--~L~~L~sL~~LdLS~N~Ls~L~~- 230 (982)
+ ..++.|+.|.|+.|.|+ .+...+..+|+|+.|+|..|....+. ....+..|+.|+|++|++-.++.
T Consensus 193 ---~-----~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~ 264 (505)
T KOG3207|consen 193 ---T-----LLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQG 264 (505)
T ss_pred ---h-----hhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccc
Confidence 1 13568999999999999 55556778999999999999633332 45567889999999999988774
Q ss_pred -cccccccceeecccCCcCCCc--cc------CCCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCccc
Q 002014 231 -FSEVSCHIVKLVLRNNALTTL--RG------IENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWY 301 (982)
Q Consensus 231 -l~~~L~sL~~L~Ls~N~Ls~L--~~------L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~~~ 301 (982)
....++.|..|+++.+.|..+ +. ...+++|++|++..|+|..++.+..+..+++|+.|.+.+|+|.....
T Consensus 265 ~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e~~- 343 (505)
T KOG3207|consen 265 YKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKETD- 343 (505)
T ss_pred cccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccccc-
Confidence 455689999999999999986 22 36789999999999999999988888899999999999999986643
Q ss_pred chhHhhhcCCCceeecCCCccChHHHHHHHHHHHhh
Q 002014 302 RAQVFSYFAHPAKLKVDGKEISTRELWERQLIIARR 337 (982)
Q Consensus 302 r~~v~~~l~~L~lL~LdgN~Is~~e~~~~~~l~~~~ 337 (982)
....+......+...|++-.+...++..++..|...
T Consensus 344 ~a~~~VIAr~~~l~~LN~~di~p~eRR~AEl~~~~~ 379 (505)
T KOG3207|consen 344 TAKLLVIARISQLVKLNDVDISPNERRDAELYYLSK 379 (505)
T ss_pred ceeEEeeeehhhhhhhcccccChHHhhhhhhhHHhh
Confidence 222233344467778888889888888887776665
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.22 E-value=2.6e-13 Score=156.22 Aligned_cols=192 Identities=21% Similarity=0.280 Sum_probs=148.5
Q ss_pred ccccccCCCCCCchhhHHHhcCCCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhc
Q 002014 64 RAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIIC 143 (982)
Q Consensus 64 ~l~~LdLs~n~~L~~Lp~~L~~L~~Lk~L~Ls~N~L~~~iP~sf~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~ 143 (982)
+...+||+.|+ +..+|..++.+-.|..|.|..|.+. .+|.++.++..|++|||+.|+++. .|..++.|+
T Consensus 76 dt~~aDlsrNR-~~elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS~-lp~~lC~lp-------- 144 (722)
T KOG0532|consen 76 DTVFADLSRNR-FSELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLSH-LPDGLCDLP-------- 144 (722)
T ss_pred chhhhhccccc-cccCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhhc-CChhhhcCc--------
Confidence 34456777776 3447777777888888888888887 667778888888888888888865 565665554
Q ss_pred cCCCccchhhcccchhcccCCCCCCCccEEEccCCccccchhhcCCCCCCCEEEcCCCCCCCCC-CcCCCCCCCEEEcCC
Q 002014 144 HNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD-NLRKCVNLKHLDLGF 222 (982)
Q Consensus 144 ~N~L~~L~~l~~~~l~~L~~l~~L~~Lq~LdLS~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~-~L~~L~sL~~LdLS~ 222 (982)
|+.|.+++|+++.+|..++.++.|..|+.+.|.|..++ .++.+.+|+.|.+..
T Consensus 145 --------------------------Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrR 198 (722)
T KOG0532|consen 145 --------------------------LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRR 198 (722)
T ss_pred --------------------------ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhh
Confidence 78999999999999999998899999999999999876 788999999999999
Q ss_pred CCCCCccccccccccceeecccCCcCCCcc-cCCCCCCCCEEECcCCCCCCCchhhhh-cCCCCCcEEEecCC
Q 002014 223 NNLRSIAAFSEVSCHIVKLVLRNNALTTLR-GIENLKSLEGLDISYNIISTFSELEFL-ASLPYLLNLWLEGN 293 (982)
Q Consensus 223 N~Ls~L~~l~~~L~sL~~L~Ls~N~Ls~L~-~L~~L~sL~~LdLS~N~Ls~l~~l~~L-~~Lp~L~~L~LsgN 293 (982)
|++..+|.....+ .|..|++++|+|..|| .|.+|..|++|-|.+|.|.+-|.-... +...-.++|+...+
T Consensus 199 n~l~~lp~El~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 199 NHLEDLPEELCSL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred hhhhhCCHHHhCC-ceeeeecccCceeecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 9999888755443 4888888888888887 788888888888888888886532111 22333455666555
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.14 E-value=1.2e-11 Score=142.80 Aligned_cols=176 Identities=24% Similarity=0.272 Sum_probs=151.9
Q ss_pred CCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhccCCCccchhhcccchhcccCCCCCCCccEEEccCCccccchhhcC
Q 002014 109 PFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDESLQ 188 (982)
Q Consensus 109 ~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N~L~~L~~l~~~~l~~L~~l~~L~~Lq~LdLS~N~Lt~LP~sL~ 188 (982)
.+.--...||+.|++.. +|..+..+..|..+++.+|.+..++.-+. ++..|++|+|+.|+++.+|..++
T Consensus 73 ~ltdt~~aDlsrNR~~e-lp~~~~~f~~Le~liLy~n~~r~ip~~i~----------~L~~lt~l~ls~NqlS~lp~~lC 141 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFSE-LPEEACAFVSLESLILYHNCIRTIPEAIC----------NLEALTFLDLSSNQLSHLPDGLC 141 (722)
T ss_pred cccchhhhhcccccccc-CchHHHHHHHHHHHHHHhccceecchhhh----------hhhHHHHhhhccchhhcCChhhh
Confidence 45666788999999976 77788888887888888888777765432 35689999999999999999998
Q ss_pred CCCCCCEEEcCCCCCCCCC-CcCCCCCCCEEEcCCCCCCCccccccccccceeecccCCcCCCcc-cCCCCCCCCEEECc
Q 002014 189 LLPAVETLDLSRNKFAKVD-NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLR-GIENLKSLEGLDIS 266 (982)
Q Consensus 189 ~L~~L~~LdLS~N~Lt~l~-~L~~L~sL~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~N~Ls~L~-~L~~L~sL~~LdLS 266 (982)
.|| |+.|-+++|+++.+| .++.+..|..|+.+.|.|..+++-...+.+|+.|.+..|++..+| .+. .-.|..||++
T Consensus 142 ~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~-~LpLi~lDfS 219 (722)
T KOG0532|consen 142 DLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELC-SLPLIRLDFS 219 (722)
T ss_pred cCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHh-CCceeeeecc
Confidence 887 999999999999986 788889999999999999999998888899999999999999986 555 4469999999
Q ss_pred CCCCCCCchhhhhcCCCCCcEEEecCCCCCCCc
Q 002014 267 YNIISTFSELEFLASLPYLLNLWLEGNPLCCSR 299 (982)
Q Consensus 267 ~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~ 299 (982)
+|+|+.+| ..+.+|..|++|-|.+||+...+
T Consensus 220 cNkis~iP--v~fr~m~~Lq~l~LenNPLqSPP 250 (722)
T KOG0532|consen 220 CNKISYLP--VDFRKMRHLQVLQLENNPLQSPP 250 (722)
T ss_pred cCceeecc--hhhhhhhhheeeeeccCCCCCCh
Confidence 99999998 57899999999999999998654
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.13 E-value=5.1e-11 Score=122.92 Aligned_cols=137 Identities=26% Similarity=0.355 Sum_probs=54.4
Q ss_pred EcCCCCCCCCCCcCCCCCCCEEEcCCCCCCCccccccccccceeecccCCcCCCcccCCCCCCCCEEECcCCCCCCCchh
Q 002014 197 DLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGIENLKSLEGLDISYNIISTFSEL 276 (982)
Q Consensus 197 dLS~N~Lt~l~~L~~L~sL~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~N~Ls~L~~L~~L~sL~~LdLS~N~Ls~l~~l 276 (982)
.|..+.|..++.+.++..++.|+|.+|.|+.+..+...+.+|+.|+|++|.|+.++++..++.|+.|+|++|+|+.+..
T Consensus 3 ~lt~~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~- 81 (175)
T PF14580_consen 3 RLTANMIEQIAQYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISE- 81 (175)
T ss_dssp ---------------------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CH-
T ss_pred cccccccccccccccccccccccccccccccccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCcccc-
Confidence 3556677777788888899999999999999987665678999999999999999999999999999999999999863
Q ss_pred hhhcCCCCCcEEEecCCCCCCCcccchhHhhhcCCCceeecCCCccChHHHHHHHHHHHh
Q 002014 277 EFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTRELWERQLIIAR 336 (982)
Q Consensus 277 ~~L~~Lp~L~~L~LsgNpLs~~~~~r~~v~~~l~~L~lL~LdgN~Is~~e~~~~~~l~~~ 336 (982)
.....+|+|+.|+|++|.|.....+ ..+..++.|+.+.|.+|||+....++..+++.-
T Consensus 82 ~l~~~lp~L~~L~L~~N~I~~l~~l--~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~l 139 (175)
T PF14580_consen 82 GLDKNLPNLQELYLSNNKISDLNEL--EPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKL 139 (175)
T ss_dssp HHHHH-TT--EEE-TTS---SCCCC--GGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-
T ss_pred chHHhCCcCCEEECcCCcCCChHHh--HHHHcCCCcceeeccCCcccchhhHHHHHHHHc
Confidence 2224689999999999999876544 346788999999999999997776666555433
No 30
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.11 E-value=3.2e-11 Score=130.49 Aligned_cols=284 Identities=19% Similarity=0.171 Sum_probs=190.5
Q ss_pred cCCCCCcEEEccCCCCCC--CCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhccCCCccchhhcccchhcc
Q 002014 84 KLLTSLKVVSALPPPARD--PTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEI 161 (982)
Q Consensus 84 ~~L~~Lk~L~Ls~N~L~~--~iP~sf~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N~L~~L~~l~~~~l~~L 161 (982)
..++.++.|+|.+|.|++ .+...+.+||.|++|+|+.|.+...+ ..++
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I----~~lp-------------------------- 117 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDI----KSLP-------------------------- 117 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcc----ccCc--------------------------
Confidence 457788899999998873 34455678899999999999887522 1221
Q ss_pred cCCCCCCCccEEEccCCccc--cchhhcCCCCCCCEEEcCCCCCCCCC----CcCCC-CCCCEEEcCCCCCCCcc---cc
Q 002014 162 KDSPQWNRLSFVSCSCNRLV--IMDESLQLLPAVETLDLSRNKFAKVD----NLRKC-VNLKHLDLGFNNLRSIA---AF 231 (982)
Q Consensus 162 ~~l~~L~~Lq~LdLS~N~Lt--~LP~sL~~L~~L~~LdLS~N~Lt~l~----~L~~L-~sL~~LdLS~N~Ls~L~---~l 231 (982)
..+.+|+.|.|.+..|. .....+..+|.++.|+++.|.+..+. ..... +.+++|.+..|...... .+
T Consensus 118 ---~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l 194 (418)
T KOG2982|consen 118 ---LPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKL 194 (418)
T ss_pred ---ccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhH
Confidence 12457889999888876 55567788999999999999766541 12222 46667777766543322 23
Q ss_pred ccccccceeecccCCcCCCc---ccCCCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCC--cccchhHh
Q 002014 232 SEVSCHIVKLVLRNNALTTL---RGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCS--RWYRAQVF 306 (982)
Q Consensus 232 ~~~L~sL~~L~Ls~N~Ls~L---~~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~--~~~r~~v~ 306 (982)
...+|++..+.+..|.|+.. .+...+|.+..|+|+.|+|.++..++.+..++.|..|.+.+||+... +.-+...
T Consensus 195 ~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~l- 273 (418)
T KOG2982|consen 195 SRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFL- 273 (418)
T ss_pred HhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEE-
Confidence 44568899999999999886 36778888889999999999999999999999999999999999865 2222221
Q ss_pred hhcCCCceeecCCCccChHHHHHHHHHHHhhcCCCCCccccCCCCCCCCCCCchhhhhhhhhhhhcccccccccccCCCC
Q 002014 307 SYFAHPAKLKVDGKEISTRELWERQLIIARRQKRPAGFGFYSPAKGNADGDGNANRKRKKACRLASIESEEESTCVGSDR 386 (982)
Q Consensus 307 ~~l~~L~lL~LdgN~Is~~e~~~~~~l~~~~~~~~~~~~~~~P~~~~~~~~~~~~~k~kk~rRL~~i~~~e~~~c~~Sd~ 386 (982)
-..+...+..|+|..|+..++...+..|.+- |...+..+...+......++...++.+..-+...+..-
T Consensus 274 lIaRL~~v~vLNGskIss~er~dSEr~fVRy---------ym~qke~p~ky~el~~~Hg~l~~Lv~~~l~pdkrvk~l-- 342 (418)
T KOG2982|consen 274 LIARLTKVQVLNGSKISSRERKDSERRFVRY---------YMSQKELPDKYGELELLHGRLYELVKLHLIPDKRVKAL-- 342 (418)
T ss_pred EEeeccceEEecCcccchhhhhhhHHHHHHH---------HhhhhhcchhhhhHHHHccchhhhhhcccCchheeeee--
Confidence 1223355567889999999999888887764 22233333333444444455555555544333211100
Q ss_pred CCCCCCccccccccccCCCchHHHHHHHHHHH
Q 002014 387 ESVSCDNEIESKEENVASDDDAEIIDLMSRVE 418 (982)
Q Consensus 387 ~S~~c~~~s~skde~~~sd~d~ei~dl~~klE 418 (982)
....+..+....+-...+.+|++.++
T Consensus 343 ------~~~~~v~~s~~I~~~~TV~D~~~~Ld 368 (418)
T KOG2982|consen 343 ------NSGPKVIASGLICMTRTVLDFMKILD 368 (418)
T ss_pred ------ccCCccccceEEEeehHHHHHHHHhc
Confidence 01111222334556677888988887
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.01 E-value=3e-10 Score=130.22 Aligned_cols=193 Identities=27% Similarity=0.270 Sum_probs=127.0
Q ss_pred EEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhh-hhhHhhhccCCCccchhhcccchhcccCCCCCCC
Q 002014 91 VVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELR-HTLEKIICHNSTNALRHVFASRIVEIKDSPQWNR 169 (982)
Q Consensus 91 ~L~Ls~N~L~~~iP~sf~~L~nL~~LdLS~N~Lss~~p~~L~~L~-~LLeLLL~~N~L~~L~~l~~~~l~~L~~l~~L~~ 169 (982)
.|.+..|.+.... ..+..++.++.|++.+|.++. ++.....+. ++..+.+.+|.+..++. .+..+++
T Consensus 97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~~l~~----------~~~~l~~ 164 (394)
T COG4886 97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIESLPS----------PLRNLPN 164 (394)
T ss_pred eeeccccccccCc-hhhhcccceeEEecCCccccc-Cccccccchhhcccccccccchhhhhh----------hhhcccc
Confidence 3454444442211 223334555555555555554 333333332 44455555554444421 1124567
Q ss_pred ccEEEccCCccccchhhcCCCCCCCEEEcCCCCCCCCCCc-CCCCCCCEEEcCCCCCCCccccccccccceeecccCCcC
Q 002014 170 LSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNL-RKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNAL 248 (982)
Q Consensus 170 Lq~LdLS~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~~L-~~L~sL~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~N~L 248 (982)
|+.|++++|++..+|.....+++|+.|++++|+++.++.. ..+..|+.|.+++|.+..++.....+..+..|.+.+|++
T Consensus 165 L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~ 244 (394)
T COG4886 165 LKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKL 244 (394)
T ss_pred ccccccCCchhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCcee
Confidence 8888888888888877766788888888888888888754 455568888888886555555555667788888888888
Q ss_pred CC-cccCCCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCC
Q 002014 249 TT-LRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCS 298 (982)
Q Consensus 249 s~-L~~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~ 298 (982)
.. +..+..+++|+.|++++|.++.++. ++.+.+|+.|++++|.+...
T Consensus 245 ~~~~~~~~~l~~l~~L~~s~n~i~~i~~---~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 245 EDLPESIGNLSNLETLDLSNNQISSISS---LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred eeccchhccccccceecccccccccccc---ccccCccCEEeccCcccccc
Confidence 77 3467777888888888888888763 77788888888888887644
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.00 E-value=3.2e-10 Score=129.97 Aligned_cols=148 Identities=28% Similarity=0.393 Sum_probs=75.3
Q ss_pred CccEEEccCCccccchhhcCCCCCCCEEEcCCCCCCCCCCcC-CCCCCCEEEcCCCCCCCccccccccccceeecccCCc
Q 002014 169 RLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLR-KCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNA 247 (982)
Q Consensus 169 ~Lq~LdLS~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~~L~-~L~sL~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~N~ 247 (982)
+|+.|++++|++..+|..+..+++|+.|++++|+++.++... .++.|+.|++++|.++.++.....+..|+.|.+++|.
T Consensus 141 nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~ 220 (394)
T COG4886 141 NLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNS 220 (394)
T ss_pred hcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCc
Confidence 455555555555555545555555555555555555554333 4555555555555555555443333445555555552
Q ss_pred -CCCcccCCCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchhHhhhcCCCceeecCCCccC
Q 002014 248 -LTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIS 323 (982)
Q Consensus 248 -Ls~L~~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~~~r~~v~~~l~~L~lL~LdgN~Is 323 (982)
+..+..+..+.++..|.+.+|++..++ ..+..+++|+.|++++|.++.... +..+..++.+++++|.+.
T Consensus 221 ~~~~~~~~~~~~~l~~l~l~~n~~~~~~--~~~~~l~~l~~L~~s~n~i~~i~~-----~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 221 IIELLSSLSNLKNLSGLELSNNKLEDLP--ESIGNLSNLETLDLSNNQISSISS-----LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred ceecchhhhhcccccccccCCceeeecc--chhccccccceecccccccccccc-----ccccCccCEEeccCcccc
Confidence 333334555555555555555555432 334455555555555555553321 334444555555555444
No 33
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.95 E-value=1.4e-10 Score=134.68 Aligned_cols=228 Identities=27% Similarity=0.330 Sum_probs=164.7
Q ss_pred HHhcCCCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhccCCCccchhhcccchhc
Q 002014 81 RILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVE 160 (982)
Q Consensus 81 ~~L~~L~~Lk~L~Ls~N~L~~~iP~sf~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N~L~~L~~l~~~~l~~ 160 (982)
..+..+++|..|+|.+|.|..+.. .+..+++|++|+|++|.|+.+ .++..++.|..+.+.+|.+..+..
T Consensus 89 ~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~~~~-------- 157 (414)
T KOG0531|consen 89 NHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISDISG-------- 157 (414)
T ss_pred cccccccceeeeeccccchhhccc-chhhhhcchheeccccccccc--cchhhccchhhheeccCcchhccC--------
Confidence 346778888888988888875442 266788899999999988863 346666667777788886555543
Q ss_pred ccCCCCCCCccEEEccCCccccchhh-cCCCCCCCEEEcCCCCCCCCCCcCCCCCCCEEEcCCCCCCCccccccccc--c
Q 002014 161 IKDSPQWNRLSFVSCSCNRLVIMDES-LQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSC--H 237 (982)
Q Consensus 161 L~~l~~L~~Lq~LdLS~N~Lt~LP~s-L~~L~~L~~LdLS~N~Lt~l~~L~~L~sL~~LdLS~N~Ls~L~~l~~~L~--s 237 (982)
+..+..|+.+++++|++..+... +..+.+|+.+++.+|.+..+..+..+..+..+++..|.++.+.+.... . .
T Consensus 158 ---~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~~l~~~-~~~~ 233 (414)
T KOG0531|consen 158 ---LESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLEGLNEL-VMLH 233 (414)
T ss_pred ---CccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceeccCcccc-hhHH
Confidence 33466888888888888877543 467888888888888888887777777777778888888776654432 2 3
Q ss_pred ceeecccCCcCCCc-ccCCCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCc-ccchhHhhhcCCCcee
Q 002014 238 IVKLVLRNNALTTL-RGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSR-WYRAQVFSYFAHPAKL 315 (982)
Q Consensus 238 L~~L~Ls~N~Ls~L-~~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~-~~r~~v~~~l~~L~lL 315 (982)
|+.+.+++|.+..+ ..+..+..+..|++..|++..+.. +...+.+..+++..|++.... ..........+.+..+
T Consensus 234 L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (414)
T KOG0531|consen 234 LRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNLEG---LERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTL 310 (414)
T ss_pred HHHHhcccCccccccccccccccccccchhhcccccccc---ccccchHHHhccCcchhcchhhhhcccccccccccccc
Confidence 88888888888888 678888888888888888887643 556677777888888876331 1111113455667778
Q ss_pred ecCCCccChHH
Q 002014 316 KVDGKEISTRE 326 (982)
Q Consensus 316 ~LdgN~Is~~e 326 (982)
.+.+|++....
T Consensus 311 ~~~~~~~~~~~ 321 (414)
T KOG0531|consen 311 TLELNPIRKIS 321 (414)
T ss_pred ccccCcccccc
Confidence 88888877544
No 34
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.83 E-value=3.1e-10 Score=131.79 Aligned_cols=245 Identities=24% Similarity=0.251 Sum_probs=181.8
Q ss_pred hcCCcEEEecCCCccchHhhhhcccccccccCCCCccccccccccCCCCCCchhhHHHhcCCCCCcEEEccCCCCCCCCC
Q 002014 25 IEGSIVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTP 104 (982)
Q Consensus 25 L~sl~~L~L~~~~L~~Lp~~L~~L~~Le~L~~~~~~~~l~l~~LdLs~n~~L~~Lp~~L~~L~~Lk~L~Ls~N~L~~~iP 104 (982)
+...+++.+..+.+..+-..+..+.+|+ .+++.+|. ++.+...+..+++|++|+|++|.|+.+.
T Consensus 71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~--------------~l~l~~n~-i~~i~~~l~~~~~L~~L~ls~N~I~~i~- 134 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKILNHLSKLKSLE--------------ALDLYDNK-IEKIENLLSSLVNLQVLDLSFNKITKLE- 134 (414)
T ss_pred hHhHHhhccchhhhhhhhccccccccee--------------eeeccccc-hhhcccchhhhhcchheecccccccccc-
Confidence 4444555566666665333333334333 35566664 4445555788999999999999999766
Q ss_pred cCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhccCCCccchhhcccchhcccCCCCCCCccEEEccCCccccch
Q 002014 105 LSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMD 184 (982)
Q Consensus 105 ~sf~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N~L~~L~~l~~~~l~~L~~l~~L~~Lq~LdLS~N~Lt~LP 184 (982)
.+..++.|+.|++++|.|+. ...+..+..+..+.+.+|.+..+... . +..+.+|+.+++.+|.+..+
T Consensus 135 -~l~~l~~L~~L~l~~N~i~~--~~~~~~l~~L~~l~l~~n~i~~ie~~--------~-~~~~~~l~~l~l~~n~i~~i- 201 (414)
T KOG0531|consen 135 -GLSTLTLLKELNLSGNLISD--ISGLESLKSLKLLDLSYNRIVDIEND--------E-LSELISLEELDLGGNSIREI- 201 (414)
T ss_pred -chhhccchhhheeccCcchh--ccCCccchhhhcccCCcchhhhhhhh--------h-hhhccchHHHhccCCchhcc-
Confidence 35677889999999999986 34555577777777888865555442 0 23567899999999999976
Q ss_pred hhcCCCCCCCEEEcCCCCCCCCCCcCCCCC--CCEEEcCCCCCCCccccccccccceeecccCCcCCCcccCCCCCCCCE
Q 002014 185 ESLQLLPAVETLDLSRNKFAKVDNLRKCVN--LKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGIENLKSLEG 262 (982)
Q Consensus 185 ~sL~~L~~L~~LdLS~N~Lt~l~~L~~L~s--L~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~N~Ls~L~~L~~L~sL~~ 262 (982)
..+..+..+..+++..|.++.+..+..+.. |+.+++++|++..++.....+..+..|++.+|++..+..+...+.+..
T Consensus 202 ~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~ 281 (414)
T KOG0531|consen 202 EGLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNLEGLERLPKLSE 281 (414)
T ss_pred cchHHHHHHHHhhcccccceeccCcccchhHHHHHHhcccCccccccccccccccccccchhhccccccccccccchHHH
Confidence 344555566667999999999887777776 999999999999885445556889999999999999988899999999
Q ss_pred EECcCCCCCCCc-hh--hhhcCCCCCcEEEecCCCCCCC
Q 002014 263 LDISYNIISTFS-EL--EFLASLPYLLNLWLEGNPLCCS 298 (982)
Q Consensus 263 LdLS~N~Ls~l~-~l--~~L~~Lp~L~~L~LsgNpLs~~ 298 (982)
+++..|.+.... .. ......+.++.+.+.+||+...
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (414)
T KOG0531|consen 282 LWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKI 320 (414)
T ss_pred hccCcchhcchhhhhccccccccccccccccccCccccc
Confidence 999999887322 11 2256778999999999999765
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.82 E-value=6e-10 Score=120.71 Aligned_cols=132 Identities=23% Similarity=0.235 Sum_probs=107.5
Q ss_pred CCCCCCEEEcCCCCCCCCC-CcCCCCCCCEEEcCCCCCCCccccccccccceeecccCCcCCCcc-cCCCCCCCCEEECc
Q 002014 189 LLPAVETLDLSRNKFAKVD-NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLR-GIENLKSLEGLDIS 266 (982)
Q Consensus 189 ~L~~L~~LdLS~N~Lt~l~-~L~~L~sL~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~N~Ls~L~-~L~~L~sL~~LdLS 266 (982)
.+..|++|||++|.|+.++ ...-++.++.|++++|.|..+..+ ..+++|+.|+|++|.++.+. +-..+-+++.|.|+
T Consensus 282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nL-a~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNL-AELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhh-hhcccceEeecccchhHhhhhhHhhhcCEeeeehh
Confidence 4456889999999999886 566668999999999999888873 45689999999999998875 44677889999999
Q ss_pred CCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchhHhhhcCCCceeecCCCccChHH
Q 002014 267 YNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTRE 326 (982)
Q Consensus 267 ~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~~~r~~v~~~l~~L~lL~LdgN~Is~~e 326 (982)
.|.|.++. .+..+-+|..|++++|+|...... ..+..++.|..+.|.+||+...-
T Consensus 361 ~N~iE~LS---GL~KLYSLvnLDl~~N~Ie~ldeV--~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 361 QNKIETLS---GLRKLYSLVNLDLSSNQIEELDEV--NHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred hhhHhhhh---hhHhhhhheeccccccchhhHHHh--cccccccHHHHHhhcCCCccccc
Confidence 99998875 367788899999999999765433 33678889999999999998653
No 36
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.81 E-value=2.5e-09 Score=118.41 Aligned_cols=84 Identities=27% Similarity=0.341 Sum_probs=47.9
Q ss_pred CCCccEEEccCCcccc-----chhhcCCCCCCCEEEcCCCCCCCC------CCcCCCCCCCEEEcCCCCCCCccc-----
Q 002014 167 WNRLSFVSCSCNRLVI-----MDESLQLLPAVETLDLSRNKFAKV------DNLRKCVNLKHLDLGFNNLRSIAA----- 230 (982)
Q Consensus 167 L~~Lq~LdLS~N~Lt~-----LP~sL~~L~~L~~LdLS~N~Lt~l------~~L~~L~sL~~LdLS~N~Ls~L~~----- 230 (982)
-+.|+++.+++|++.. +...|...+.|+.+.+..|.|..- ..|..+++|+.|||..|.++.-..
T Consensus 156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak 235 (382)
T KOG1909|consen 156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK 235 (382)
T ss_pred CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence 3567777777777763 223566667777777777766541 245666666666666666653221
Q ss_pred cccccccceeecccCCcCCC
Q 002014 231 FSEVSCHIVKLVLRNNALTT 250 (982)
Q Consensus 231 l~~~L~sL~~L~Ls~N~Ls~ 250 (982)
....+++|+.|+++.|.++.
T Consensus 236 aL~s~~~L~El~l~dcll~~ 255 (382)
T KOG1909|consen 236 ALSSWPHLRELNLGDCLLEN 255 (382)
T ss_pred Hhcccchheeeccccccccc
Confidence 22223444444444444443
No 37
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.80 E-value=2.6e-09 Score=118.30 Aligned_cols=226 Identities=21% Similarity=0.248 Sum_probs=147.2
Q ss_pred ccCCCCCCc----hhhHHHhcCCCCCcEEEccCCCCC----CCCCc-------CCCCCCCccEEEeeCCCCCccchhhHH
Q 002014 68 SDLGDHRAL----EQLRRILKLLTSLKVVSALPPPAR----DPTPL-------SLLPFCRLKVLELRGCDLSTSAAKGLL 132 (982)
Q Consensus 68 LdLs~n~~L----~~Lp~~L~~L~~Lk~L~Ls~N~L~----~~iP~-------sf~~L~nL~~LdLS~N~Lss~~p~~L~ 132 (982)
++|++|..- +.+...+.+.+.|+..++++ -++ ..+|. ++...++|++||||.|-+....++.|.
T Consensus 35 l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd-~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~ 113 (382)
T KOG1909|consen 35 LDLSGNTFGTEAARAIAKVLASKKELREVNLSD-MFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLE 113 (382)
T ss_pred EeccCCchhHHHHHHHHHHHhhcccceeeehHh-hhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHH
Confidence 455555432 23445566666666666653 222 22332 333446777777777777544444444
Q ss_pred hhhhhhHhhhccCCCccchhhcccchhcccCCCCCCCccEEEccCCccc-----cc---------hhhcCCCCCCCEEEc
Q 002014 133 ELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLV-----IM---------DESLQLLPAVETLDL 198 (982)
Q Consensus 133 ~L~~LLeLLL~~N~L~~L~~l~~~~l~~L~~l~~L~~Lq~LdLS~N~Lt-----~L---------P~sL~~L~~L~~LdL 198 (982)
.|-+ ....|++|.|.+|.|. .+ ..-...-+.|+.+..
T Consensus 114 ~ll~-----------------------------s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~ 164 (382)
T KOG1909|consen 114 ELLS-----------------------------SCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFIC 164 (382)
T ss_pred HHHH-----------------------------hccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEe
Confidence 3321 0123444444444443 11 123456678999999
Q ss_pred CCCCCCCCC------CcCCCCCCCEEEcCCCCCCC--c---cccccccccceeecccCCcCCCc------ccCCCCCCCC
Q 002014 199 SRNKFAKVD------NLRKCVNLKHLDLGFNNLRS--I---AAFSEVSCHIVKLVLRNNALTTL------RGIENLKSLE 261 (982)
Q Consensus 199 S~N~Lt~l~------~L~~L~sL~~LdLS~N~Ls~--L---~~l~~~L~sL~~L~Ls~N~Ls~L------~~L~~L~sL~ 261 (982)
.+|++..-+ .|...+.|+.+.+..|.|.. + ...+..+++|+.|+|..|-++.- ..+..+++|+
T Consensus 165 ~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~ 244 (382)
T KOG1909|consen 165 GRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLR 244 (382)
T ss_pred eccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchhe
Confidence 999998742 57778999999999998863 2 12455689999999999998873 3678888999
Q ss_pred EEECcCCCCCCCchhhh----hcCCCCCcEEEecCCCCCCCccc-chhHhhhcCCCceeecCCCccC
Q 002014 262 GLDISYNIISTFSELEF----LASLPYLLNLWLEGNPLCCSRWY-RAQVFSYFAHPAKLKVDGKEIS 323 (982)
Q Consensus 262 ~LdLS~N~Ls~l~~l~~----L~~Lp~L~~L~LsgNpLs~~~~~-r~~v~~~l~~L~lL~LdgN~Is 323 (982)
.|+++++.+..-..... -...|+|+.|.|.+|.|+..... ....+...+.|..|.|++|...
T Consensus 245 El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 245 ELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred eecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 99999999987544221 23579999999999999865321 1122344677899999999995
No 38
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=5.2e-10 Score=126.46 Aligned_cols=210 Identities=20% Similarity=0.164 Sum_probs=152.1
Q ss_pred CCCCCccEEEeeCCCCCccch--hhHHhhhhhhHhhhccCCCccchhhcccchhcccCCCCCCCccEEEccCCccccchh
Q 002014 108 LPFCRLKVLELRGCDLSTSAA--KGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDE 185 (982)
Q Consensus 108 ~~L~nL~~LdLS~N~Lss~~p--~~L~~L~~LLeLLL~~N~L~~L~~l~~~~l~~L~~l~~L~~Lq~LdLS~N~Lt~LP~ 185 (982)
+++.+|+.+.|.++.+.. ++ .....+++..+++++.|=+..+..+. .-...+++|+.|+|+.|++...-.
T Consensus 118 sn~kkL~~IsLdn~~V~~-~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~-------~i~eqLp~Le~LNls~Nrl~~~~~ 189 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVED-AGIEEYSKILPNVRDLDLSRNLFHNWFPVL-------KIAEQLPSLENLNLSSNRLSNFIS 189 (505)
T ss_pred hhHHhhhheeecCccccc-cchhhhhhhCCcceeecchhhhHHhHHHHH-------HHHHhcccchhcccccccccCCcc
Confidence 467899999999998864 33 35667888888888887443333221 112367899999999999873322
Q ss_pred --hcCCCCCCCEEEcCCCCCCCCC---CcCCCCCCCEEEcCCCCCCCccc-cccccccceeecccCCcCCCc---ccCCC
Q 002014 186 --SLQLLPAVETLDLSRNKFAKVD---NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRNNALTTL---RGIEN 256 (982)
Q Consensus 186 --sL~~L~~L~~LdLS~N~Lt~l~---~L~~L~sL~~LdLS~N~Ls~L~~-l~~~L~sL~~L~Ls~N~Ls~L---~~L~~ 256 (982)
.-..++.|+.|.|+.+.|+.-. .+..+|+|..|+|..|....+.. ....+..|+.|+|++|++-.. +....
T Consensus 190 s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~ 269 (505)
T KOG3207|consen 190 SNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGT 269 (505)
T ss_pred ccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccccccccccc
Confidence 1225678999999999998522 45667899999999996322222 233467899999999988775 46788
Q ss_pred CCCCCEEECcCCCCCCCchhhh-----hcCCCCCcEEEecCCCCCCCcccchhHhhhcCCCceeecCCCccChHHH
Q 002014 257 LKSLEGLDISYNIISTFSELEF-----LASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTREL 327 (982)
Q Consensus 257 L~sL~~LdLS~N~Ls~l~~l~~-----L~~Lp~L~~L~LsgNpLs~~~~~r~~v~~~l~~L~lL~LdgN~Is~~e~ 327 (982)
++.|+.|+++.+.|+++..++. ...+++|+.|++..|++..-+.+ ..+..+++++.+.+++|.++.++-
T Consensus 270 l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl--~~l~~l~nlk~l~~~~n~ln~e~~ 343 (505)
T KOG3207|consen 270 LPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSL--NHLRTLENLKHLRITLNYLNKETD 343 (505)
T ss_pred ccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcccccccc--chhhccchhhhhhccccccccccc
Confidence 9999999999999988654332 35689999999999999654432 234567788888889999986654
No 39
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.62 E-value=3.6e-08 Score=102.60 Aligned_cols=120 Identities=28% Similarity=0.330 Sum_probs=86.1
Q ss_pred CCCEEEcCCCCCCCCCCcCCCCCCCEEEcCCCCCCCccccccccccceeecccCCcCCCcccCCCCCCCCEEECcCCCCC
Q 002014 192 AVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGIENLKSLEGLDISYNIIS 271 (982)
Q Consensus 192 ~L~~LdLS~N~Lt~l~~L~~L~sL~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~N~Ls~L~~L~~L~sL~~LdLS~N~Ls 271 (982)
....+||++|.+..++.|..++.|.+|.|++|+|+.+.+.. -..+++|..|.|.+|.|.
T Consensus 43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L---------------------~~~~p~l~~L~LtnNsi~ 101 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDL---------------------DTFLPNLKTLILTNNSIQ 101 (233)
T ss_pred ccceecccccchhhcccCCCccccceEEecCCcceeeccch---------------------hhhccccceEEecCcchh
Confidence 34455555555555555555555555555555555544321 123466777888888887
Q ss_pred CCchhhhhcCCCCCcEEEecCCCCCCCcccchhHhhhcCCCceeecCCCccChHHHHHHHHHH
Q 002014 272 TFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTRELWERQLII 334 (982)
Q Consensus 272 ~l~~l~~L~~Lp~L~~L~LsgNpLs~~~~~r~~v~~~l~~L~lL~LdgN~Is~~e~~~~~~l~ 334 (982)
.+.++..+..+|+|+.|.+-+||++....||..++..++. +-.||...|+..|+..++.++
T Consensus 102 ~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~--l~~LDF~kVt~~ER~~A~~~f 162 (233)
T KOG1644|consen 102 ELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPS--LRTLDFQKVTRKEREEAEVFF 162 (233)
T ss_pred hhhhcchhccCCccceeeecCCchhcccCceeEEEEecCc--ceEeehhhhhHHHHHHHHHHh
Confidence 7777778899999999999999999999999988776655 455678899999999999887
No 40
>PLN03150 hypothetical protein; Provisional
Probab=98.39 E-value=4.2e-07 Score=111.20 Aligned_cols=104 Identities=18% Similarity=0.212 Sum_probs=87.5
Q ss_pred CCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhccCCCccchhhcccchhcccCCCCC
Q 002014 88 SLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQW 167 (982)
Q Consensus 88 ~Lk~L~Ls~N~L~~~iP~sf~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N~L~~L~~l~~~~l~~L~~l~~L 167 (982)
.++.|+|.+|.+.+.+|..+..+++|+.|+|++|.|++.+|..+..+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l--------------------------------- 465 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSI--------------------------------- 465 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCC---------------------------------
Confidence 47889999999999999999999999999999999998788766544
Q ss_pred CCccEEEccCCccc-cchhhcCCCCCCCEEEcCCCCCCC-CC-CcCC-CCCCCEEEcCCCC
Q 002014 168 NRLSFVSCSCNRLV-IMDESLQLLPAVETLDLSRNKFAK-VD-NLRK-CVNLKHLDLGFNN 224 (982)
Q Consensus 168 ~~Lq~LdLS~N~Lt-~LP~sL~~L~~L~~LdLS~N~Lt~-l~-~L~~-L~sL~~LdLS~N~ 224 (982)
++|+.|+|++|+|+ .+|..+..+++|+.|+|++|.+++ +| .+.. +.++..+++.+|.
T Consensus 466 ~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 466 TSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence 37899999999998 888899999999999999999885 44 4443 2466788888885
No 41
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.37 E-value=1.6e-08 Score=119.66 Aligned_cols=134 Identities=19% Similarity=0.201 Sum_probs=106.7
Q ss_pred CCCEEEcCCCCCCCCC-CcCCCCCCCEEEcCCCCCCCccccccccccceeecccCCcCCCcccC--CCCCCCCEEECcCC
Q 002014 192 AVETLDLSRNKFAKVD-NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGI--ENLKSLEGLDISYN 268 (982)
Q Consensus 192 ~L~~LdLS~N~Lt~l~-~L~~L~sL~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~N~Ls~L~~L--~~L~sL~~LdLS~N 268 (982)
.|...+.++|.+..++ ++.-++.|+.|+|++|+++.+. ....++.|++|+|+.|.|+.+|.+ ..+. |..|.|++|
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN 242 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNN 242 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeeccc
Confidence 4667777888888775 6777889999999999999887 455678999999999999998744 3444 999999999
Q ss_pred CCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchhHhhhcCCCceeecCCCccChHHHHHHHH
Q 002014 269 IISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTRELWERQL 332 (982)
Q Consensus 269 ~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~~~r~~v~~~l~~L~lL~LdgN~Is~~e~~~~~~ 332 (982)
.++.+.. +.++.+|+.|||+.|-|.....+.+ +..+..|..|.|.|||+-|....++..
T Consensus 243 ~l~tL~g---ie~LksL~~LDlsyNll~~hseL~p--LwsLs~L~~L~LeGNPl~c~p~hRaat 301 (1096)
T KOG1859|consen 243 ALTTLRG---IENLKSLYGLDLSYNLLSEHSELEP--LWSLSSLIVLWLEGNPLCCAPWHRAAT 301 (1096)
T ss_pred HHHhhhh---HHhhhhhhccchhHhhhhcchhhhH--HHHHHHHHHHhhcCCccccCHHHHHHH
Confidence 9998754 6788899999999999987765433 345667899999999999876555443
No 42
>PLN03150 hypothetical protein; Provisional
Probab=98.32 E-value=8.7e-07 Score=108.44 Aligned_cols=103 Identities=25% Similarity=0.275 Sum_probs=85.2
Q ss_pred CccEEEeeCCCCCccchhhHHhhhhhhHhhhccCCCccchhhcccchhcccCCCCCCCccEEEccCCccc-cchhhcCCC
Q 002014 112 RLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLV-IMDESLQLL 190 (982)
Q Consensus 112 nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N~L~~L~~l~~~~l~~L~~l~~L~~Lq~LdLS~N~Lt-~LP~sL~~L 190 (982)
.++.|+|++|.+.+.+|..+..+ ++|+.|+|++|.|. .+|..+..+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L---------------------------------~~L~~L~Ls~N~l~g~iP~~~~~l 465 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKL---------------------------------RHLQSINLSGNSIRGNIPPSLGSI 465 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCC---------------------------------CCCCEEECCCCcccCcCChHHhCC
Confidence 48899999999998888766544 47999999999998 899999999
Q ss_pred CCCCEEEcCCCCCCC-CC-CcCCCCCCCEEEcCCCCCCC-ccccccc-cccceeecccCCc
Q 002014 191 PAVETLDLSRNKFAK-VD-NLRKCVNLKHLDLGFNNLRS-IAAFSEV-SCHIVKLVLRNNA 247 (982)
Q Consensus 191 ~~L~~LdLS~N~Lt~-l~-~L~~L~sL~~LdLS~N~Ls~-L~~l~~~-L~sL~~L~Ls~N~ 247 (982)
++|+.|+|++|.+++ +| .+..+++|+.|+|++|.+++ +|..... +.++..+++.+|.
T Consensus 466 ~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 466 TSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence 999999999999996 44 78999999999999999985 4443322 3456788888885
No 43
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.17 E-value=1.3e-06 Score=74.37 Aligned_cols=58 Identities=38% Similarity=0.492 Sum_probs=46.9
Q ss_pred CCccEEEccCCccccchh-hcCCCCCCCEEEcCCCCCCCCC--CcCCCCCCCEEEcCCCCC
Q 002014 168 NRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNL 225 (982)
Q Consensus 168 ~~Lq~LdLS~N~Lt~LP~-sL~~L~~L~~LdLS~N~Lt~l~--~L~~L~sL~~LdLS~N~L 225 (982)
++|++|++++|+|+.+|. .|..+++|++|+|++|.|+.++ .|..+++|+.|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 368888888888888875 7778888888888888888764 678888888888888865
No 44
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.17 E-value=1.7e-07 Score=101.45 Aligned_cols=116 Identities=30% Similarity=0.432 Sum_probs=94.5
Q ss_pred CCCCCEEEcCCCCCCCccccccccccceeecccCCcCCCcccCCCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEec
Q 002014 212 CVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLE 291 (982)
Q Consensus 212 L~sL~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~N~Ls~L~~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~Ls 291 (982)
+.+.+.|++-++.|..|.-. ..++.|+.|.|+-|+|+.+..+..|++|+.|+|..|.|.++..+..+.++|+|+.|+|.
T Consensus 18 l~~vkKLNcwg~~L~DIsic-~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISIC-EKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred HHHhhhhcccCCCccHHHHH-HhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence 34555666666666665432 33577888888888888888888999999999999999999999999999999999999
Q ss_pred CCCCCCC--cccchhHhhhcCCCceeecCCCccChHHHHHH
Q 002014 292 GNPLCCS--RWYRAQVFSYFAHPAKLKVDGKEISTRELWER 330 (982)
Q Consensus 292 gNpLs~~--~~~r~~v~~~l~~L~lL~LdgN~Is~~e~~~~ 330 (982)
.||.+.. ..|+..++..+++|+ .||+-+|+..+...+
T Consensus 97 ENPCc~~ag~nYR~~VLR~LPnLk--KLDnv~VteeEle~A 135 (388)
T KOG2123|consen 97 ENPCCGEAGQNYRRKVLRVLPNLK--KLDNVPVTEEELEEA 135 (388)
T ss_pred cCCcccccchhHHHHHHHHcccch--hccCccccHHHHHHH
Confidence 9998765 689999999886655 678999998887765
No 45
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.16 E-value=1.1e-06 Score=74.80 Aligned_cols=59 Identities=36% Similarity=0.459 Sum_probs=38.9
Q ss_pred ccceeecccCCcCCCcc--cCCCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCC
Q 002014 236 CHIVKLVLRNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPL 295 (982)
Q Consensus 236 ~sL~~L~Ls~N~Ls~L~--~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpL 295 (982)
|+|+.|+|++|+|+.++ .|..+++|++|++++|.|+.+++ ..+..+++|+.|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~-~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPP-DAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEET-TTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCH-HHHcCCCCCCEEeCcCCcC
Confidence 34666666666666653 56667777777777777776654 5566777777777777764
No 46
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.16 E-value=2.2e-06 Score=89.46 Aligned_cols=108 Identities=24% Similarity=0.300 Sum_probs=79.4
Q ss_pred CCCccEEEccCCccccchhhcCCCCCCCEEEcCCCCCCCCC-CcCC-CCCCCEEEcCCCCCCCccccccccccceeeccc
Q 002014 167 WNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD-NLRK-CVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLR 244 (982)
Q Consensus 167 L~~Lq~LdLS~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~-~L~~-L~sL~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls 244 (982)
+.....+||++|.|..+ ..|..++.|.+|.|.+|+|+.+. .+.. +++|..|.|.+|+|..+..+
T Consensus 41 ~d~~d~iDLtdNdl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl------------- 106 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDL------------- 106 (233)
T ss_pred ccccceecccccchhhc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhc-------------
Confidence 34678899999999977 46778999999999999999985 4544 46788888888877665443
Q ss_pred CCcCCCcccCCCCCCCCEEECcCCCCCCCchh--hhhcCCCCCcEEEecCCCC
Q 002014 245 NNALTTLRGIENLKSLEGLDISYNIISTFSEL--EFLASLPYLLNLWLEGNPL 295 (982)
Q Consensus 245 ~N~Ls~L~~L~~L~sL~~LdLS~N~Ls~l~~l--~~L~~Lp~L~~L~LsgNpL 295 (982)
..+..||.|++|.+-+|.++..... ..+..+|+|+.||+++=..
T Consensus 107 -------~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 107 -------DPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred -------chhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence 2356677777777777777664432 2456788889888866544
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.97 E-value=5.3e-06 Score=90.77 Aligned_cols=83 Identities=24% Similarity=0.233 Sum_probs=61.2
Q ss_pred ccccccCCCCCCc--hhhHHHhcCCCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCcc-chhhHHhhhhhhHh
Q 002014 64 RAYVSDLGDHRAL--EQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTS-AAKGLLELRHTLEK 140 (982)
Q Consensus 64 ~l~~LdLs~n~~L--~~Lp~~L~~L~~Lk~L~Ls~N~L~~~iP~sf~~L~nL~~LdLS~N~Lss~-~p~~L~~L~~LLeL 140 (982)
++..+||.+|..- ..+...+.+||.|+.|+|+.|.+...+-..-..+.+|+.|-|.+..+.-. ....+..++.+.++
T Consensus 72 ~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtel 151 (418)
T KOG2982|consen 72 DVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTEL 151 (418)
T ss_pred hhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhh
Confidence 4557888888543 45677889999999999999999855533225678999999999887632 23455667777778
Q ss_pred hhccCC
Q 002014 141 IICHNS 146 (982)
Q Consensus 141 LL~~N~ 146 (982)
+++.|+
T Consensus 152 HmS~N~ 157 (418)
T KOG2982|consen 152 HMSDNS 157 (418)
T ss_pred hhccch
Confidence 777773
No 48
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.92 E-value=6.3e-06 Score=104.00 Aligned_cols=89 Identities=15% Similarity=0.183 Sum_probs=68.0
Q ss_pred HHHhcCCCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhccCC-Cccchhhcccch
Q 002014 80 RRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNS-TNALRHVFASRI 158 (982)
Q Consensus 80 p~~L~~L~~Lk~L~Ls~N~L~~~iP~sf~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N~-L~~L~~l~~~~l 158 (982)
+..|..++.|++|||++|.-.+.+|..++.|-+|++|+|++..+.. +|.++.+|..|+.|++..+. +..+++.
T Consensus 564 ~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~-LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i----- 637 (889)
T KOG4658|consen 564 GEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISH-LPSGLGNLKKLIYLNLEVTGRLESIPGI----- 637 (889)
T ss_pred HHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccc-cchHHHHHHhhheeccccccccccccch-----
Confidence 4468889999999999988888999999999999999999999975 89999999988877776552 1111111
Q ss_pred hcccCCCCCCCccEEEccCCc
Q 002014 159 VEIKDSPQWNRLSFVSCSCNR 179 (982)
Q Consensus 159 ~~L~~l~~L~~Lq~LdLS~N~ 179 (982)
...+.+|++|.+..-.
T Consensus 638 -----~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 638 -----LLELQSLRVLRLPRSA 653 (889)
T ss_pred -----hhhcccccEEEeeccc
Confidence 1235677777776554
No 49
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.87 E-value=1.7e-05 Score=85.94 Aligned_cols=131 Identities=20% Similarity=0.165 Sum_probs=65.5
Q ss_pred CCCccEEEccCCccc-cch----hhcCCCCCCCEEEcCCCCCCCCC---------------CcCCCCCCCEEEcCCCCCC
Q 002014 167 WNRLSFVSCSCNRLV-IMD----ESLQLLPAVETLDLSRNKFAKVD---------------NLRKCVNLKHLDLGFNNLR 226 (982)
Q Consensus 167 L~~Lq~LdLS~N~Lt-~LP----~sL~~L~~L~~LdLS~N~Lt~l~---------------~L~~L~sL~~LdLS~N~Ls 226 (982)
+++|+.++||.|.+. ..| +.++.-+.|.+|.|++|.+..+. ....-|.|+.+....|++.
T Consensus 91 cp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle 170 (388)
T COG5238 91 CPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE 170 (388)
T ss_pred CCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc
Confidence 455666666666554 222 23344455666666666554321 1223355666666666655
Q ss_pred Cccc-----cccccccceeecccCCcCCCc-------ccCCCCCCCCEEECcCCCCCCCchh---hhhcCCCCCcEEEec
Q 002014 227 SIAA-----FSEVSCHIVKLVLRNNALTTL-------RGIENLKSLEGLDISYNIISTFSEL---EFLASLPYLLNLWLE 291 (982)
Q Consensus 227 ~L~~-----l~~~L~sL~~L~Ls~N~Ls~L-------~~L~~L~sL~~LdLS~N~Ls~l~~l---~~L~~Lp~L~~L~Ls 291 (982)
.-+. .+..-..|+.+.+..|.|..- -++..+.+|+.|||..|-++..... ..+..++.|+.|.+.
T Consensus 171 ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~ln 250 (388)
T COG5238 171 NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLN 250 (388)
T ss_pred cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcccc
Confidence 4332 111113555666666655431 2345556666666666665543211 234455556666666
Q ss_pred CCCCCC
Q 002014 292 GNPLCC 297 (982)
Q Consensus 292 gNpLs~ 297 (982)
.|-++.
T Consensus 251 DClls~ 256 (388)
T COG5238 251 DCLLSN 256 (388)
T ss_pred chhhcc
Confidence 665543
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.78 E-value=7.4e-06 Score=88.76 Aligned_cols=218 Identities=18% Similarity=0.128 Sum_probs=132.3
Q ss_pred hcCCcEEEecCCCcc-----chHhhhhcccccccccCCCCccccccccccCCC-----CCCchhhHHHhcCCCCCcEEEc
Q 002014 25 IEGSIVLKLNPAGLH-----YVQSRLEALRELERLLAGAPLDYLRAYVSDLGD-----HRALEQLRRILKLLTSLKVVSA 94 (982)
Q Consensus 25 L~sl~~L~L~~~~L~-----~Lp~~L~~L~~Le~L~~~~~~~~l~l~~LdLs~-----n~~L~~Lp~~L~~L~~Lk~L~L 94 (982)
++.+..++|+.|-+. .|...+.+-++|+...... +-.+. ...+.-+-..+.+||+|+.++|
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd---------~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~L 99 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSD---------AFTGRDKDELYSNLVMLLKALLKCPRLQKVDL 99 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhh---------hhhcccHHHHHHHHHHHHHHHhcCCcceeeec
Confidence 778889999999776 4555666656655543210 00111 0113334456788999999999
Q ss_pred cCCCCCCCCCcC----CCCCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhccCCCccchhhcccchhcccCCCCCCCc
Q 002014 95 LPPPARDPTPLS----LLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRL 170 (982)
Q Consensus 95 s~N~L~~~iP~s----f~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N~L~~L~~l~~~~l~~L~~l~~L~~L 170 (982)
+.|.+....|.. ++.-+.|.+|.|++|.+....-.-++.- |. .+..| .....-|.|
T Consensus 100 SDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigka--l~--~la~n----------------KKaa~kp~L 159 (388)
T COG5238 100 SDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKA--LF--HLAYN----------------KKAADKPKL 159 (388)
T ss_pred cccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHH--HH--HHHHH----------------hhhccCCCc
Confidence 999998766654 4556899999999998853222222211 01 11222 111234689
Q ss_pred cEEEccCCccccchh-----hcCCCCCCCEEEcCCCCCCC--C-----CCcCCCCCCCEEEcCCCCCCCccc-----ccc
Q 002014 171 SFVSCSCNRLVIMDE-----SLQLLPAVETLDLSRNKFAK--V-----DNLRKCVNLKHLDLGFNNLRSIAA-----FSE 233 (982)
Q Consensus 171 q~LdLS~N~Lt~LP~-----sL~~L~~L~~LdLS~N~Lt~--l-----~~L~~L~sL~~LdLS~N~Ls~L~~-----l~~ 233 (982)
+++.+..|++..-|. .+..-.+|+.+-+..|.|.. + -.+..+.+|+.|||..|.++.... ...
T Consensus 160 e~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~ 239 (388)
T COG5238 160 EVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALC 239 (388)
T ss_pred eEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhc
Confidence 999999999985543 23333578888888888764 2 245667888888888887764432 233
Q ss_pred ccccceeecccCCcCCCc------ccC--CCCCCCCEEECcCCCCC
Q 002014 234 VSCHIVKLVLRNNALTTL------RGI--ENLKSLEGLDISYNIIS 271 (982)
Q Consensus 234 ~L~sL~~L~Ls~N~Ls~L------~~L--~~L~sL~~LdLS~N~Ls 271 (982)
.++.|+.|.+..|-++.- ..+ ...|+|..|-+.+|.+.
T Consensus 240 ~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~ 285 (388)
T COG5238 240 EWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERR 285 (388)
T ss_pred ccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhc
Confidence 345566777666665542 111 23355555555555443
No 51
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.69 E-value=2.3e-05 Score=99.04 Aligned_cols=177 Identities=16% Similarity=0.182 Sum_probs=99.2
Q ss_pred CCCCcEEEccCCC--CCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhccCCCccchhhcccchhcccC
Q 002014 86 LTSLKVVSALPPP--ARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKD 163 (982)
Q Consensus 86 L~~Lk~L~Ls~N~--L~~~iP~sf~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N~L~~L~~l~~~~l~~L~~ 163 (982)
.+.|+.|-+..|. +....+..|..++.|++|||++|.=.+.+|..++.|-+|..+.+.+..+..+|..+.
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~-------- 615 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLG-------- 615 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHH--------
Confidence 4478888888886 554455557788999999999887666788888888876666666665555544322
Q ss_pred CCCCCCccEEEccCCcc-ccchhhcCCCCCCCEEEcCCCCCCC----CCCcCCCCCCCEEEcCCCCCCCcccc---cccc
Q 002014 164 SPQWNRLSFVSCSCNRL-VIMDESLQLLPAVETLDLSRNKFAK----VDNLRKCVNLKHLDLGFNNLRSIAAF---SEVS 235 (982)
Q Consensus 164 l~~L~~Lq~LdLS~N~L-t~LP~sL~~L~~L~~LdLS~N~Lt~----l~~L~~L~sL~~LdLS~N~Ls~L~~l---~~~L 235 (982)
++..|.+|++..+.- ..+|..+..|++|++|.+....... +..+..+.+|+.|.........+..+ ....
T Consensus 616 --~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~ 693 (889)
T KOG4658|consen 616 --NLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLR 693 (889)
T ss_pred --HHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHH
Confidence 345666777766543 3444455556677777665543221 12344444454444433222001111 1111
Q ss_pred ccceeecccCCcCCC-cccCCCCCCCCEEECcCCCCCC
Q 002014 236 CHIVKLVLRNNALTT-LRGIENLKSLEGLDISYNIIST 272 (982)
Q Consensus 236 ~sL~~L~Ls~N~Ls~-L~~L~~L~sL~~LdLS~N~Ls~ 272 (982)
...+.+.+..+.... +..+..+.+|+.|.+.+..+..
T Consensus 694 ~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e 731 (889)
T KOG4658|consen 694 SLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISE 731 (889)
T ss_pred HHhHhhhhcccccceeecccccccCcceEEEEcCCCch
Confidence 122233333332222 3456677777777777776654
No 52
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.63 E-value=5.6e-05 Score=60.83 Aligned_cols=41 Identities=32% Similarity=0.436 Sum_probs=28.8
Q ss_pred CccEEEccCCccccchhhcCCCCCCCEEEcCCCCCCCCCCc
Q 002014 169 RLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNL 209 (982)
Q Consensus 169 ~Lq~LdLS~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~~L 209 (982)
+|++|++++|+|+.+|..+..|++|+.|++++|+|+.++.+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~l 42 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISPL 42 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGGG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcCC
Confidence 57777777777777777677777777777777777766544
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.60 E-value=6.2e-06 Score=81.70 Aligned_cols=129 Identities=25% Similarity=0.265 Sum_probs=81.7
Q ss_pred CccEEEccCCccccchhhc---CCCCCCCEEEcCCCCCCCCC-CcC-CCCCCCEEEcCCCCCCCccccccccccceeecc
Q 002014 169 RLSFVSCSCNRLVIMDESL---QLLPAVETLDLSRNKFAKVD-NLR-KCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVL 243 (982)
Q Consensus 169 ~Lq~LdLS~N~Lt~LP~sL---~~L~~L~~LdLS~N~Lt~l~-~L~-~L~sL~~LdLS~N~Ls~L~~l~~~L~sL~~L~L 243 (982)
.+..++|+.++|..+++.. .....|+..+|++|.+..+| .|. ..+.++.|+|++|.|+.+|..+..++.|+.|++
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL 107 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence 4667888888888666643 34445666678888877765 333 345677777777777777766666677777777
Q ss_pred cCCcCCCcc-cCCCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCc
Q 002014 244 RNNALTTLR-GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSR 299 (982)
Q Consensus 244 s~N~Ls~L~-~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~ 299 (982)
+.|.|...+ .+..+.+|-.|+...|.+..++--.....++.| ..+.++|+...+
T Consensus 108 ~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~dl~~s~~~al--~~lgnepl~~~~ 162 (177)
T KOG4579|consen 108 RFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVDLFYSSLPAL--IKLGNEPLGDET 162 (177)
T ss_pred ccCccccchHHHHHHHhHHHhcCCCCccccCcHHHhccccHHH--HHhcCCcccccC
Confidence 777776653 444467777777777777766531111222222 334666666554
No 54
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.56 E-value=5.1e-06 Score=82.27 Aligned_cols=128 Identities=20% Similarity=0.255 Sum_probs=92.6
Q ss_pred CCCEEEcCCCCCCCCC----CcCCCCCCCEEEcCCCCCCCccc-cccccccceeecccCCcCCCcc-cCCCCCCCCEEEC
Q 002014 192 AVETLDLSRNKFAKVD----NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRNNALTTLR-GIENLKSLEGLDI 265 (982)
Q Consensus 192 ~L~~LdLS~N~Lt~l~----~L~~L~sL~~LdLS~N~Ls~L~~-l~~~L~sL~~L~Ls~N~Ls~L~-~L~~L~sL~~LdL 265 (982)
.+..++|+.++|-.++ .+.....|+..+|++|.+..+|+ +...++.++.|+|++|.|+++| .+..++.|+.|++
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL 107 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence 4567788888877553 45666778888999999998887 3334568899999999999886 6888899999999
Q ss_pred cCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchhHhhhcCCCceeecCCCccChH
Q 002014 266 SYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTR 325 (982)
Q Consensus 266 S~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~~~r~~v~~~l~~L~lL~LdgN~Is~~ 325 (982)
+.|.|...+ ..+..+.+|-.|+..+|.+...+ + . +-.-..+-+..+..+++...
T Consensus 108 ~~N~l~~~p--~vi~~L~~l~~Lds~~na~~eid-~--d-l~~s~~~al~~lgnepl~~~ 161 (177)
T KOG4579|consen 108 RFNPLNAEP--RVIAPLIKLDMLDSPENARAEID-V--D-LFYSSLPALIKLGNEPLGDE 161 (177)
T ss_pred ccCccccch--HHHHHHHhHHHhcCCCCccccCc-H--H-HhccccHHHHHhcCCccccc
Confidence 999988877 44556888888888888876543 1 1 11223344556666666543
No 55
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=2.8e-06 Score=92.92 Aligned_cols=193 Identities=21% Similarity=0.235 Sum_probs=101.4
Q ss_pred cccCCCCCCchhhHHHhcCCC--CCcEEEccCCCCCCC-CCcCCCCC-CCccEEEeeCCCCCccchhhHHhhhhhhHhhh
Q 002014 67 VSDLGDHRALEQLRRILKLLT--SLKVVSALPPPARDP-TPLSLLPF-CRLKVLELRGCDLSTSAAKGLLELRHTLEKII 142 (982)
Q Consensus 67 ~LdLs~n~~L~~Lp~~L~~L~--~Lk~L~Ls~N~L~~~-iP~sf~~L-~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL 142 (982)
.+|+.+-+. -|..+..+. ....+.+..--+... +.+.+..+ +.|++||||+..|+.. .+..+ +
T Consensus 140 ~lDl~~r~i---~p~~l~~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~s---tl~~i-------L 206 (419)
T KOG2120|consen 140 TLDLTGRNI---HPDVLGRLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVS---TLHGI-------L 206 (419)
T ss_pred eeccCCCcc---ChhHHHHHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHH---HHHHH-------H
Confidence 355554322 133444443 455566553333222 22222222 4699999999888742 11111 1
Q ss_pred ccCCCccchhhcccchhcccCCCCCCCccEEEccCCccc-cchhhcCCCCCCCEEEcCCC-CCCCCC---CcCCCCCCCE
Q 002014 143 CHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLV-IMDESLQLLPAVETLDLSRN-KFAKVD---NLRKCVNLKH 217 (982)
Q Consensus 143 ~~N~L~~L~~l~~~~l~~L~~l~~L~~Lq~LdLS~N~Lt-~LP~sL~~L~~L~~LdLS~N-~Lt~l~---~L~~L~sL~~ 217 (982)
+ .+.+|+.|.|.+++|. .+-..+..-.+|+.|+|+.+ .++... -+.+++.|..
T Consensus 207 s----------------------~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 207 S----------------------QCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred H----------------------HHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 1 1235666666666666 44445666667777777653 444421 3556677777
Q ss_pred EEcCCCCCCCcc--c-cccccccceeecccCCc----CCCcc-cCCCCCCCCEEECcCCC-CCCCchhhhhcCCCCCcEE
Q 002014 218 LDLGFNNLRSIA--A-FSEVSCHIVKLVLRNNA----LTTLR-GIENLKSLEGLDISYNI-ISTFSELEFLASLPYLLNL 288 (982)
Q Consensus 218 LdLS~N~Ls~L~--~-l~~~L~sL~~L~Ls~N~----Ls~L~-~L~~L~sL~~LdLS~N~-Ls~l~~l~~L~~Lp~L~~L 288 (982)
|+|+++.+..-. . ....-++|..|+|++++ ...+. -...+|+|.+|||++|. |+. ..+..+..++.|++|
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~-~~~~~~~kf~~L~~l 343 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN-DCFQEFFKFNYLQHL 343 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc-hHHHHHHhcchheee
Confidence 777777654311 1 11113566667766652 11222 22556777777777663 333 334556667777777
Q ss_pred EecCCCC
Q 002014 289 WLEGNPL 295 (982)
Q Consensus 289 ~LsgNpL 295 (982)
.|+.+..
T Consensus 344 SlsRCY~ 350 (419)
T KOG2120|consen 344 SLSRCYD 350 (419)
T ss_pred ehhhhcC
Confidence 7766643
No 56
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.51 E-value=6.3e-05 Score=81.49 Aligned_cols=115 Identities=25% Similarity=0.249 Sum_probs=73.9
Q ss_pred CCCCCEEEcCCCCCCCCCCcCCCCCCCEEEcCCCCCCCccccccccccceeecccCCcCCCcccCCCCCCCCEEECcCCC
Q 002014 190 LPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGIENLKSLEGLDISYNI 269 (982)
Q Consensus 190 L~~L~~LdLS~N~Lt~l~~L~~L~sL~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~N~Ls~L~~L~~L~sL~~LdLS~N~ 269 (982)
+..|+.|.+.+..++.+..+..+++|+.|.++.|.......+. .-...+|+|++|+|+.|+
T Consensus 42 ~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~-------------------vl~e~~P~l~~l~ls~Nk 102 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLE-------------------VLAEKAPNLKVLNLSGNK 102 (260)
T ss_pred ccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccce-------------------ehhhhCCceeEEeecCCc
Confidence 3445555555556666556666666666666666332211110 112344777777777777
Q ss_pred CCCCchhhhhcCCCCCcEEEecCCCCCCCcccchhHhhhcCCCceeecCCCccChH
Q 002014 270 ISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTR 325 (982)
Q Consensus 270 Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~~~r~~v~~~l~~L~lL~LdgN~Is~~ 325 (982)
|..+..+..+..+.+|..|++..|+.+....|+..+|..++ ++..||+..+...
T Consensus 103 i~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~--~L~~LD~~dv~~~ 156 (260)
T KOG2739|consen 103 IKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLP--SLKYLDGCDVDGE 156 (260)
T ss_pred cccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhh--hhccccccccCCc
Confidence 77665556677888899999999988887788988888774 4555666666543
No 57
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.26 E-value=0.00029 Score=56.71 Aligned_cols=40 Identities=33% Similarity=0.468 Sum_probs=26.4
Q ss_pred CCCCEEEcCCCCCCCCCC-cCCCCCCCEEEcCCCCCCCccc
Q 002014 191 PAVETLDLSRNKFAKVDN-LRKCVNLKHLDLGFNNLRSIAA 230 (982)
Q Consensus 191 ~~L~~LdLS~N~Lt~l~~-L~~L~sL~~LdLS~N~Ls~L~~ 230 (982)
++|++|++++|+|+.++. +.+|++|+.|+|++|+|+.+++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 356777777777777765 7777777777777777766554
No 58
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=3e-05 Score=85.08 Aligned_cols=82 Identities=20% Similarity=0.207 Sum_probs=39.8
Q ss_pred CccEEEccCCccc--cchhhcCCCCCCCEEEcCCCCCCCC--CCcCCCCCCCEEEcCCC-CCCCcc--ccccccccceee
Q 002014 169 RLSFVSCSCNRLV--IMDESLQLLPAVETLDLSRNKFAKV--DNLRKCVNLKHLDLGFN-NLRSIA--AFSEVSCHIVKL 241 (982)
Q Consensus 169 ~Lq~LdLS~N~Lt--~LP~sL~~L~~L~~LdLS~N~Lt~l--~~L~~L~sL~~LdLS~N-~Ls~L~--~l~~~L~sL~~L 241 (982)
.|++|||++..|+ .+...+..+..|+.|.|.++++... ..+..-.+|+.|+|+.+ .++... -++..++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 3555555555555 3333444455555555555555542 23445555555555554 233211 133344555555
Q ss_pred cccCCcCCC
Q 002014 242 VLRNNALTT 250 (982)
Q Consensus 242 ~Ls~N~Ls~ 250 (982)
+|+.+.+..
T Consensus 266 NlsWc~l~~ 274 (419)
T KOG2120|consen 266 NLSWCFLFT 274 (419)
T ss_pred CchHhhccc
Confidence 555554443
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.18 E-value=0.0012 Score=76.84 Aligned_cols=136 Identities=14% Similarity=0.165 Sum_probs=72.5
Q ss_pred hcCCCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhccCCCccchhhcccchhccc
Q 002014 83 LKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIK 162 (982)
Q Consensus 83 L~~L~~Lk~L~Ls~N~L~~~iP~sf~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N~L~~L~~l~~~~l~~L~ 162 (982)
+..+++|+.|++++|.++. +|. -..+|+.|.+++|.--..+|..+ +
T Consensus 48 ~~~~~~l~~L~Is~c~L~s-LP~---LP~sLtsL~Lsnc~nLtsLP~~L---P--------------------------- 93 (426)
T PRK15386 48 IEEARASGRLYIKDCDIES-LPV---LPNELTEITIENCNNLTTLPGSI---P--------------------------- 93 (426)
T ss_pred HHHhcCCCEEEeCCCCCcc-cCC---CCCCCcEEEccCCCCcccCCchh---h---------------------------
Confidence 4557899999999987774 342 23479999998754323344322 1
Q ss_pred CCCCCCCccEEEccCC-ccccchhhcCCCCCCCEEEcCCCCCCCCCCcCCCCCCCEEEcCCCC-CC--Cccccccccccc
Q 002014 163 DSPQWNRLSFVSCSCN-RLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNN-LR--SIAAFSEVSCHI 238 (982)
Q Consensus 163 ~l~~L~~Lq~LdLS~N-~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~~L~~L~sL~~LdLS~N~-Ls--~L~~l~~~L~sL 238 (982)
++|+.|.+++| .|..+|. +|+.|++..|.+..++.+. ++|+.|.+.+++ .. .++. ...++|
T Consensus 94 -----~nLe~L~Ls~Cs~L~sLP~------sLe~L~L~~n~~~~L~~LP--ssLk~L~I~~~n~~~~~~lp~--~LPsSL 158 (426)
T PRK15386 94 -----EGLEKLTVCHCPEISGLPE------SVRSLEIKGSATDSIKNVP--NGLTSLSINSYNPENQARIDN--LISPSL 158 (426)
T ss_pred -----hhhhheEccCccccccccc------ccceEEeCCCCCcccccCc--chHhheecccccccccccccc--ccCCcc
Confidence 24566666665 5554443 3555566555544332221 245555554322 11 1111 112466
Q ss_pred eeecccCCcCCCcc-cCCCCCCCCEEECcCCC
Q 002014 239 VKLVLRNNALTTLR-GIENLKSLEGLDISYNI 269 (982)
Q Consensus 239 ~~L~Ls~N~Ls~L~-~L~~L~sL~~LdLS~N~ 269 (982)
+.|.+++|....+| .+. .+|+.|.++.|.
T Consensus 159 k~L~Is~c~~i~LP~~LP--~SLk~L~ls~n~ 188 (426)
T PRK15386 159 KTLSLTGCSNIILPEKLP--ESLQSITLHIEQ 188 (426)
T ss_pred cEEEecCCCcccCccccc--ccCcEEEecccc
Confidence 66776666554433 222 466667666653
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.16 E-value=0.00021 Score=88.51 Aligned_cols=106 Identities=26% Similarity=0.289 Sum_probs=44.4
Q ss_pred CCCCCEEEcCCCCCCCCC---CcCCCCCCCEEEcCCCCCCCccccccccccceeecccCCcCCCc---ccCCCCCCCCEE
Q 002014 190 LPAVETLDLSRNKFAKVD---NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTL---RGIENLKSLEGL 263 (982)
Q Consensus 190 L~~L~~LdLS~N~Lt~l~---~L~~L~sL~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~N~Ls~L---~~L~~L~sL~~L 263 (982)
+|+|+.|.+++-.+..-+ -+.++++|..||+|+.+++.+.. ...+++|+.|.+.+=.+..- ..+..|++|+.|
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~G-IS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vL 225 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSG-ISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVL 225 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHH-HhccccHHHHhccCCCCCchhhHHHHhcccCCCee
Confidence 344444444443333211 23334444444444444444321 22234444444444333331 234445555555
Q ss_pred ECcCCCCCCCchh-----hhhcCCCCCcEEEecCCCCC
Q 002014 264 DISYNIISTFSEL-----EFLASLPYLLNLWLEGNPLC 296 (982)
Q Consensus 264 dLS~N~Ls~l~~l-----~~L~~Lp~L~~L~LsgNpLs 296 (982)
|+|.......+.. +.-..+|+|+.||.+++.+.
T Consensus 226 DIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 226 DISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred eccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 5555443332210 11223555555555555443
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.15 E-value=0.0012 Score=76.84 Aligned_cols=135 Identities=16% Similarity=0.164 Sum_probs=90.5
Q ss_pred CCCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhccCCCccchhhcccchhcccCCCCCCCccEEEccC-Cccccchhh
Q 002014 108 LPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSC-NRLVIMDES 186 (982)
Q Consensus 108 ~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N~L~~L~~l~~~~l~~L~~l~~L~~Lq~LdLS~-N~Lt~LP~s 186 (982)
..+.+++.|++++|.|+. +| .++ .+|+.|.+++ +.++.+|..
T Consensus 49 ~~~~~l~~L~Is~c~L~s-LP----~LP--------------------------------~sLtsL~Lsnc~nLtsLP~~ 91 (426)
T PRK15386 49 EEARASGRLYIKDCDIES-LP----VLP--------------------------------NELTEITIENCNNLTTLPGS 91 (426)
T ss_pred HHhcCCCEEEeCCCCCcc-cC----CCC--------------------------------CCCcEEEccCCCCcccCCch
Confidence 345788899999987765 33 122 2688888876 567778765
Q ss_pred cCCCCCCCEEEcCCC-CCCCCCCcCCCCCCCEEEcCCCCCCCccccccccccceeecccCCc-CC--CcccCCCCCCCCE
Q 002014 187 LQLLPAVETLDLSRN-KFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNA-LT--TLRGIENLKSLEG 262 (982)
Q Consensus 187 L~~L~~L~~LdLS~N-~Lt~l~~L~~L~sL~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~N~-Ls--~L~~L~~L~sL~~ 262 (982)
+ .++|+.|.+++| .+..+| ..|+.|++..|.+..+..+. +.|+.|.+.+++ .. .++. .-.++|+.
T Consensus 92 L--P~nLe~L~Ls~Cs~L~sLP-----~sLe~L~L~~n~~~~L~~LP---ssLk~L~I~~~n~~~~~~lp~-~LPsSLk~ 160 (426)
T PRK15386 92 I--PEGLEKLTVCHCPEISGLP-----ESVRSLEIKGSATDSIKNVP---NGLTSLSINSYNPENQARIDN-LISPSLKT 160 (426)
T ss_pred h--hhhhhheEccCcccccccc-----cccceEEeCCCCCcccccCc---chHhheecccccccccccccc-ccCCcccE
Confidence 5 368999999988 665543 46888888887766554433 467788875433 11 1121 11268999
Q ss_pred EECcCCCCCCCchhhhhcCCCCCcEEEecCCC
Q 002014 263 LDISYNIISTFSELEFLASLPYLLNLWLEGNP 294 (982)
Q Consensus 263 LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNp 294 (982)
|++++|....+|. .+. .+|+.|.++.|.
T Consensus 161 L~Is~c~~i~LP~--~LP--~SLk~L~ls~n~ 188 (426)
T PRK15386 161 LSLTGCSNIILPE--KLP--ESLQSITLHIEQ 188 (426)
T ss_pred EEecCCCcccCcc--ccc--ccCcEEEecccc
Confidence 9999988665552 222 489999998874
No 62
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.81 E-value=0.0011 Score=82.36 Aligned_cols=137 Identities=16% Similarity=0.157 Sum_probs=103.3
Q ss_pred CCCEEEcCCCCCCC--C-CCc-CCCCCCCEEEcCCCCCCC--ccccccccccceeecccCCcCCCcccCCCCCCCCEEEC
Q 002014 192 AVETLDLSRNKFAK--V-DNL-RKCVNLKHLDLGFNNLRS--IAAFSEVSCHIVKLVLRNNALTTLRGIENLKSLEGLDI 265 (982)
Q Consensus 192 ~L~~LdLS~N~Lt~--l-~~L-~~L~sL~~LdLS~N~Ls~--L~~l~~~L~sL~~L~Ls~N~Ls~L~~L~~L~sL~~LdL 265 (982)
+|++|++++...-. . ..+ ..+|+|+.|.+++-.+.. +..+...+|+|..||+++.+++.+.+++.+++|+.|.+
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~m 202 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLSM 202 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHhc
Confidence 45666665543322 1 122 346999999999876653 33456678999999999999999999999999999999
Q ss_pred cCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccch---hHhhhcCCCceeecCCCccChHHHH
Q 002014 266 SYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRA---QVFSYFAHPAKLKVDGKEISTRELW 328 (982)
Q Consensus 266 S~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~~~r~---~v~~~l~~L~lL~LdgN~Is~~e~~ 328 (982)
.+=.+.....+..+..|++|+.||+|..+....+.... .....++.|+.++.+|+.++..-..
T Consensus 203 rnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le 268 (699)
T KOG3665|consen 203 RNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILE 268 (699)
T ss_pred cCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHH
Confidence 99888887777788999999999999988766541111 1234678899999999988865443
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.68 E-value=0.001 Score=72.33 Aligned_cols=79 Identities=24% Similarity=0.242 Sum_probs=46.6
Q ss_pred CCCCCCccEEEccCC--ccc-cchhhcCCCCCCCEEEcCCCCCCCCC---CcCCCCCCCEEEcCCCCCCCccc----ccc
Q 002014 164 SPQWNRLSFVSCSCN--RLV-IMDESLQLLPAVETLDLSRNKFAKVD---NLRKCVNLKHLDLGFNNLRSIAA----FSE 233 (982)
Q Consensus 164 l~~L~~Lq~LdLS~N--~Lt-~LP~sL~~L~~L~~LdLS~N~Lt~l~---~L~~L~sL~~LdLS~N~Ls~L~~----l~~ 233 (982)
++.+++|+.|.++.| ++. .++.....+|+|++|++++|+|..+. .+..+.+|..|++.+|..+.+.. .+.
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ 140 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFL 140 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHH
Confidence 345667777777777 333 34333445577777777777776543 45555666777777766555432 333
Q ss_pred ccccceeec
Q 002014 234 VSCHIVKLV 242 (982)
Q Consensus 234 ~L~sL~~L~ 242 (982)
.+++|++|+
T Consensus 141 ll~~L~~LD 149 (260)
T KOG2739|consen 141 LLPSLKYLD 149 (260)
T ss_pred Hhhhhcccc
Confidence 345555444
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.57 E-value=0.0002 Score=78.27 Aligned_cols=63 Identities=27% Similarity=0.387 Sum_probs=40.6
Q ss_pred CCCccEEEccCCccccchhhcCCCCCCCEEEcCCCCCCCCCCcCCCCCCCEEEcCCCCCCCccc
Q 002014 167 WNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAA 230 (982)
Q Consensus 167 L~~Lq~LdLS~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~~L~~L~sL~~LdLS~N~Ls~L~~ 230 (982)
+.+.+.|++.++.|+.| ..+..|+.|+.|.|+-|.|+.+..|..|++|++|+|..|.|..+..
T Consensus 18 l~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldE 80 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDE 80 (388)
T ss_pred HHHhhhhcccCCCccHH-HHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHH
Confidence 34566677777777755 3455667777777777777766666666666666666666655544
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.30 E-value=0.051 Score=52.03 Aligned_cols=112 Identities=15% Similarity=0.304 Sum_probs=47.0
Q ss_pred CCCccEEEccCCccccchh-hcCCCCCCCEEEcCCCCCCCCC--CcCCCCCCCEEEcCCCCCCCccc-cccccccceeec
Q 002014 167 WNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLV 242 (982)
Q Consensus 167 L~~Lq~LdLS~N~Lt~LP~-sL~~L~~L~~LdLS~N~Lt~l~--~L~~L~sL~~LdLS~N~Ls~L~~-l~~~L~sL~~L~ 242 (982)
..+|+.+.+.. .+..++. .|..+++|+.+.+..+ +..++ .|..+++|+.+.+.. .+..++. .+..+++|+.+.
T Consensus 11 ~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~ 87 (129)
T PF13306_consen 11 CSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNID 87 (129)
T ss_dssp -TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEE
T ss_pred CCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccc
Confidence 34666777664 4555554 5666667777777664 55553 566666677777754 4444443 333356666666
Q ss_pred ccCCcCCCc--ccCCCCCCCCEEECcCCCCCCCchhhhhcCCCCC
Q 002014 243 LRNNALTTL--RGIENLKSLEGLDISYNIISTFSELEFLASLPYL 285 (982)
Q Consensus 243 Ls~N~Ls~L--~~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L 285 (982)
+..+ ++.+ ..+..+ .|+.+.+.. .+..++. ..+.++++|
T Consensus 88 ~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~-~~F~~~~~l 128 (129)
T PF13306_consen 88 IPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEE-NAFKNCTKL 128 (129)
T ss_dssp ETTT--BEEHTTTTTT--T--EEE-TT-B-SS-----GGG-----
T ss_pred cCcc-ccEEchhhhcCC-CceEEEECC-CccEECC-ccccccccC
Confidence 6554 4444 245555 666666554 3344433 344444444
No 66
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=95.07 E-value=0.0086 Score=70.98 Aligned_cols=88 Identities=40% Similarity=0.502 Sum_probs=63.2
Q ss_pred ccccceeecccCCcCCCcccC----CCCCCCCEEECcCC--CCCCCchhhhhcCCCCCcEEEecCCCCCCCcccc----h
Q 002014 234 VSCHIVKLVLRNNALTTLRGI----ENLKSLEGLDISYN--IISTFSELEFLASLPYLLNLWLEGNPLCCSRWYR----A 303 (982)
Q Consensus 234 ~L~sL~~L~Ls~N~Ls~L~~L----~~L~sL~~LdLS~N--~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~~~r----~ 303 (982)
..+.+..++|++|+|..+..+ ...|+|+.|+|++| .+.....+..++.+ .|+.|.|.|||++..-..+ .
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l-~Leel~l~GNPlc~tf~~~s~yv~ 294 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGL-PLEELVLEGNPLCTTFSDRSEYVS 294 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCC-CHHHeeecCCccccchhhhHHHHH
Confidence 457788888999988887544 44589999999999 66665544444444 5899999999998763222 2
Q ss_pred hHhhhcCCCceeecCCCccCh
Q 002014 304 QVFSYFAHPAKLKVDGKEIST 324 (982)
Q Consensus 304 ~v~~~l~~L~lL~LdgN~Is~ 324 (982)
.+...| |+++.|||..+..
T Consensus 295 ~i~~~F--PKL~~LDG~ev~~ 313 (585)
T KOG3763|consen 295 AIRELF--PKLLRLDGVEVQP 313 (585)
T ss_pred HHHHhc--chheeecCcccCc
Confidence 333344 7888999998874
No 67
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.35 E-value=0.06 Score=51.51 Aligned_cols=109 Identities=13% Similarity=0.255 Sum_probs=51.1
Q ss_pred HhcCCCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhccCCCccchhhcccchhcc
Q 002014 82 ILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEI 161 (982)
Q Consensus 82 ~L~~L~~Lk~L~Ls~N~L~~~iP~sf~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N~L~~L~~l~~~~l~~L 161 (982)
.|.++++|+.+.+. +.+..+...+|.++++|+.|.+.++ +..+....|.++
T Consensus 7 ~F~~~~~l~~i~~~-~~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~--------------------------- 57 (129)
T PF13306_consen 7 AFYNCSNLESITFP-NTIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNC--------------------------- 57 (129)
T ss_dssp TTTT-TT--EEEET-ST--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT----------------------------
T ss_pred HHhCCCCCCEEEEC-CCeeEeChhhccccccccccccccc-ccccceeeeecc---------------------------
Confidence 46667788888875 3566666677888888888888765 544322223222
Q ss_pred cCCCCCCCccEEEccCCccccchh-hcCCCCCCCEEEcCCCCCCCCC--CcCCCCCCCEEEcCCCCCCCcc
Q 002014 162 KDSPQWNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIA 229 (982)
Q Consensus 162 ~~l~~L~~Lq~LdLS~N~Lt~LP~-sL~~L~~L~~LdLS~N~Lt~l~--~L~~L~sL~~LdLS~N~Ls~L~ 229 (982)
++|+.+.+.. .+..++. .|..+++|+.+.+..+ +..++ .|.++ .|+.+.+.. .+..++
T Consensus 58 ------~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~ 118 (129)
T PF13306_consen 58 ------KSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIE 118 (129)
T ss_dssp ------TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS--
T ss_pred ------cccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEEC
Confidence 2455666644 4444433 4555667777776554 44442 45555 666666654 344444
No 68
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.23 E-value=0.0016 Score=77.59 Aligned_cols=182 Identities=25% Similarity=0.191 Sum_probs=103.5
Q ss_pred CcEEEccCCCCCCCCC----cCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhccCCCccchhhcccchhcccCC
Q 002014 89 LKVVSALPPPARDPTP----LSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDS 164 (982)
Q Consensus 89 Lk~L~Ls~N~L~~~iP----~sf~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N~L~~L~~l~~~~l~~L~~l 164 (982)
|..|.|.+|.+..... ..+..++.|..|++++|.+...-...+.+--. ++
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~-------~~------------------- 142 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLR-------LP------------------- 142 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcc-------cc-------------------
Confidence 7778888888775433 34556788888888888887422222211000 00
Q ss_pred CCCCCccEEEccCCccc-----cchhhcCCCCCCCEEEcCCCCCCCC------CCc----CCCCCCCEEEcCCCCCCCcc
Q 002014 165 PQWNRLSFVSCSCNRLV-----IMDESLQLLPAVETLDLSRNKFAKV------DNL----RKCVNLKHLDLGFNNLRSIA 229 (982)
Q Consensus 165 ~~L~~Lq~LdLS~N~Lt-----~LP~sL~~L~~L~~LdLS~N~Lt~l------~~L----~~L~sL~~LdLS~N~Ls~L~ 229 (982)
-..|++|.+..|.++ .+...+.....|+.++++.|.+... ..+ ....++++|.|++|.++...
T Consensus 143 --~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~ 220 (478)
T KOG4308|consen 143 --QCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSS 220 (478)
T ss_pred --hHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHH
Confidence 013444555555554 3334555566667777777766431 122 34566777777777766321
Q ss_pred -----cccccccc-ceeecccCCcCCCc------ccCCCC-CCCCEEECcCCCCCCCchh---hhhcCCCCCcEEEecCC
Q 002014 230 -----AFSEVSCH-IVKLVLRNNALTTL------RGIENL-KSLEGLDISYNIISTFSEL---EFLASLPYLLNLWLEGN 293 (982)
Q Consensus 230 -----~l~~~L~s-L~~L~Ls~N~Ls~L------~~L~~L-~sL~~LdLS~N~Ls~l~~l---~~L~~Lp~L~~L~LsgN 293 (982)
......+. +..|++.+|++.+. +.+..+ ..++.++++.|.|+..... ..+..++.++.+.++.|
T Consensus 221 c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n 300 (478)
T KOG4308|consen 221 CALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNN 300 (478)
T ss_pred HHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccC
Confidence 11122233 55577777777652 345555 6677788888877764321 23455667777888888
Q ss_pred CCCCC
Q 002014 294 PLCCS 298 (982)
Q Consensus 294 pLs~~ 298 (982)
++...
T Consensus 301 ~l~~~ 305 (478)
T KOG4308|consen 301 PLTDY 305 (478)
T ss_pred ccccH
Confidence 77644
No 69
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=92.40 E-value=0.0059 Score=72.87 Aligned_cols=163 Identities=22% Similarity=0.200 Sum_probs=114.8
Q ss_pred CCCCccEEEccCCccc-----cchhhcCCC-CCCCEEEcCCCCCCCC------CCcCCCCCCCEEEcCCCCCCCcc----
Q 002014 166 QWNRLSFVSCSCNRLV-----IMDESLQLL-PAVETLDLSRNKFAKV------DNLRKCVNLKHLDLGFNNLRSIA---- 229 (982)
Q Consensus 166 ~L~~Lq~LdLS~N~Lt-----~LP~sL~~L-~~L~~LdLS~N~Lt~l------~~L~~L~sL~~LdLS~N~Ls~L~---- 229 (982)
....|..|++++|.+. .+-..+... ..|++|++..+.++.. ..+.....|+.|+++.|.+....
T Consensus 113 t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l 192 (478)
T KOG4308|consen 113 TLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVL 192 (478)
T ss_pred ccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHH
Confidence 3457888999999888 111233333 5678888888888863 25666889999999999885321
Q ss_pred -ccc----cccccceeecccCCcCCCc------ccCCCCCC-CCEEECcCCCCCCCch---hhhhcCC-CCCcEEEecCC
Q 002014 230 -AFS----EVSCHIVKLVLRNNALTTL------RGIENLKS-LEGLDISYNIISTFSE---LEFLASL-PYLLNLWLEGN 293 (982)
Q Consensus 230 -~l~----~~L~sL~~L~Ls~N~Ls~L------~~L~~L~s-L~~LdLS~N~Ls~l~~---l~~L~~L-p~L~~L~LsgN 293 (982)
... ....++++|.|.+|.++.. ..+...+. +..|++.+|.+.+... ...+..+ +.++.++++.|
T Consensus 193 ~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~n 272 (478)
T KOG4308|consen 193 SQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRN 272 (478)
T ss_pred hhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcC
Confidence 111 2357899999999998873 24566666 7779999999986421 1234455 67899999999
Q ss_pred CCCCC-cccchhHhhhcCCCceeecCCCccChHHHH
Q 002014 294 PLCCS-RWYRAQVFSYFAHPAKLKVDGKEISTRELW 328 (982)
Q Consensus 294 pLs~~-~~~r~~v~~~l~~L~lL~LdgN~Is~~e~~ 328 (982)
.|+.. +......+...+.++.+.|..|++......
T Consensus 273 si~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~ 308 (478)
T KOG4308|consen 273 SITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVE 308 (478)
T ss_pred CccccchHHHHHHHhhhHHHHHhhcccCccccHHHH
Confidence 99876 222334455666889999999999866543
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=91.93 E-value=0.13 Score=59.96 Aligned_cols=38 Identities=24% Similarity=0.158 Sum_probs=22.2
Q ss_pred cCCCCCcEEEccCCCCCCC--CCcCCCCCCCccEEEeeCC
Q 002014 84 KLLTSLKVVSALPPPARDP--TPLSLLPFCRLKVLELRGC 121 (982)
Q Consensus 84 ~~L~~Lk~L~Ls~N~L~~~--iP~sf~~L~nL~~LdLS~N 121 (982)
..++.|+.|.+..+.-... .-......++|+.|+++++
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 224 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGC 224 (482)
T ss_pred hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCc
Confidence 3467777777766543322 2233445677777777763
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=89.72 E-value=0.19 Score=34.43 Aligned_cols=21 Identities=24% Similarity=0.324 Sum_probs=16.8
Q ss_pred CccEEEccCCccccchhhcCC
Q 002014 169 RLSFVSCSCNRLVIMDESLQL 189 (982)
Q Consensus 169 ~Lq~LdLS~N~Lt~LP~sL~~ 189 (982)
+|++|+|++|+|+.+|..|++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 478889999988888877654
No 72
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=87.93 E-value=0.28 Score=57.00 Aligned_cols=127 Identities=21% Similarity=0.156 Sum_probs=60.3
Q ss_pred CCCCCCEEEcCCCC-CCCC--CC-cCCCCCCCEEEcCCCC-CCC--ccccccccccceeecccCCcCCC---c-ccCCCC
Q 002014 189 LLPAVETLDLSRNK-FAKV--DN-LRKCVNLKHLDLGFNN-LRS--IAAFSEVSCHIVKLVLRNNALTT---L-RGIENL 257 (982)
Q Consensus 189 ~L~~L~~LdLS~N~-Lt~l--~~-L~~L~sL~~LdLS~N~-Ls~--L~~l~~~L~sL~~L~Ls~N~Ls~---L-~~L~~L 257 (982)
.+..|+.|..++.. ++.. .. -.+.++|+.|-|+.++ ++. +..+...++.|+.|++..+.+.. + ..-.++
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence 34456666665532 2221 12 2234666666666654 222 22234445666666666654332 1 122456
Q ss_pred CCCCEEECcCCCCCCCchhhh----hcCCCCCcEEEecCCCCCCCcccchhHhhhcCCCceeec
Q 002014 258 KSLEGLDISYNIISTFSELEF----LASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKV 317 (982)
Q Consensus 258 ~sL~~LdLS~N~Ls~l~~l~~----L~~Lp~L~~L~LsgNpLs~~~~~r~~v~~~l~~L~lL~L 317 (982)
+.|+.|.|+++.+..-..+.. -.++..|..+-|++.|...... ...+...++++.+.|
T Consensus 372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~--Le~l~~c~~Leri~l 433 (483)
T KOG4341|consen 372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDAT--LEHLSICRNLERIEL 433 (483)
T ss_pred chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHH--HHHHhhCcccceeee
Confidence 666666666553222111111 1244566667777776654321 122344455555443
No 73
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=87.63 E-value=0.024 Score=61.08 Aligned_cols=87 Identities=15% Similarity=0.076 Sum_probs=65.8
Q ss_pred CcCCCCCCCEEEcCCCCCCCccccccccccceeecccCCcCCCcc-cCCCCCCCCEEECcCCCCCCCchhhhhcCCCCCc
Q 002014 208 NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLR-GIENLKSLEGLDISYNIISTFSELEFLASLPYLL 286 (982)
Q Consensus 208 ~L~~L~sL~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~N~Ls~L~-~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~ 286 (982)
.+......+.||++.|++..+..-+..+..|..|+++.|.|..+| .+..+..+..+++..|..+..| ...+.+|.++
T Consensus 37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p--~s~~k~~~~k 114 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQP--KSQKKEPHPK 114 (326)
T ss_pred hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCC--ccccccCCcc
Confidence 344556677777777777666665556677888888888887775 6667777788888888888887 5678888888
Q ss_pred EEEecCCCCC
Q 002014 287 NLWLEGNPLC 296 (982)
Q Consensus 287 ~L~LsgNpLs 296 (982)
.+++.+|+|.
T Consensus 115 ~~e~k~~~~~ 124 (326)
T KOG0473|consen 115 KNEQKKTEFF 124 (326)
T ss_pred hhhhccCcch
Confidence 8888888875
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=86.73 E-value=0.25 Score=33.85 Aligned_cols=21 Identities=24% Similarity=0.472 Sum_probs=12.9
Q ss_pred CccEEEeeCCCCCccchhhHHh
Q 002014 112 RLKVLELRGCDLSTSAAKGLLE 133 (982)
Q Consensus 112 nL~~LdLS~N~Lss~~p~~L~~ 133 (982)
+|++|||++|+|+. +|..|.+
T Consensus 1 ~L~~Ldls~n~l~~-ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTS-IPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESE-EGTTTTT
T ss_pred CccEEECCCCcCEe-CChhhcC
Confidence 46777777777763 5544443
No 75
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=85.52 E-value=0.36 Score=56.23 Aligned_cols=59 Identities=19% Similarity=0.173 Sum_probs=39.0
Q ss_pred cccCCCCCCchh--hHHHhcCCCCCcEEEccCC-CCCCCC----CcCCCCCCCccEEEeeCCC-CCc
Q 002014 67 VSDLGDHRALEQ--LRRILKLLTSLKVVSALPP-PARDPT----PLSLLPFCRLKVLELRGCD-LST 125 (982)
Q Consensus 67 ~LdLs~n~~L~~--Lp~~L~~L~~Lk~L~Ls~N-~L~~~i----P~sf~~L~nL~~LdLS~N~-Lss 125 (982)
.+.+.++..+.. +-.....++.|+.|++.++ ...... ......+++|+.|+|+.+. ++.
T Consensus 192 ~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd 258 (482)
T KOG1947|consen 192 RLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTD 258 (482)
T ss_pred HhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCc
Confidence 355555655554 5567788999999999873 221111 1234456899999999988 554
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=80.16 E-value=0.082 Score=57.18 Aligned_cols=86 Identities=16% Similarity=0.154 Sum_probs=61.4
Q ss_pred hcCCCCCCCEEEcCCCCCCCCC-CcCCCCCCCEEEcCCCCCCCccccccccccceeecccCCcCCCcc-cCCCCCCCCEE
Q 002014 186 SLQLLPAVETLDLSRNKFAKVD-NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLR-GIENLKSLEGL 263 (982)
Q Consensus 186 sL~~L~~L~~LdLS~N~Lt~l~-~L~~L~sL~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~N~Ls~L~-~L~~L~sL~~L 263 (982)
.+..+...+.||++.|++..+. .+..++.|..|+++.|.+.-+|..+.....+..+++.+|.++..| .+...+.++.+
T Consensus 37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKN 116 (326)
T ss_pred hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchh
Confidence 3445556667777777766654 566667777777777777777766666667777788888877776 67788888888
Q ss_pred ECcCCCCC
Q 002014 264 DISYNIIS 271 (982)
Q Consensus 264 dLS~N~Ls 271 (982)
++-.|.+.
T Consensus 117 e~k~~~~~ 124 (326)
T KOG0473|consen 117 EQKKTEFF 124 (326)
T ss_pred hhccCcch
Confidence 88777654
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=80.10 E-value=1.1 Score=28.95 Aligned_cols=16 Identities=31% Similarity=0.333 Sum_probs=7.6
Q ss_pred CccEEEccCCccccch
Q 002014 169 RLSFVSCSCNRLVIMD 184 (982)
Q Consensus 169 ~Lq~LdLS~N~Lt~LP 184 (982)
+|+.|+|++|+|+.+|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4666666666666554
No 78
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=76.20 E-value=1.5 Score=28.39 Aligned_cols=14 Identities=36% Similarity=0.565 Sum_probs=5.1
Q ss_pred CCCEEECcCCCCCC
Q 002014 259 SLEGLDISYNIIST 272 (982)
Q Consensus 259 sL~~LdLS~N~Ls~ 272 (982)
+|+.|+|++|+|+.
T Consensus 2 ~L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 2 NLRTLDLSNNRLTS 15 (17)
T ss_dssp T-SEEEETSS--SS
T ss_pred ccCEEECCCCCCCC
Confidence 34444444444443
No 79
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=73.83 E-value=2.8 Score=58.70 Aligned_cols=38 Identities=42% Similarity=0.466 Sum_probs=34.1
Q ss_pred ECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccc
Q 002014 264 DISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYR 302 (982)
Q Consensus 264 dLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~~~r 302 (982)
||++|+|+.++. ..+..+++|+.|+|++|||.|+|.+.
T Consensus 1 DLSnN~LstLp~-g~F~~L~sL~~LdLsgNPw~CDC~L~ 38 (2740)
T TIGR00864 1 DISNNKISTIEE-GICANLCNLSEIDLSGNPFECDCGLA 38 (2740)
T ss_pred CCCCCcCCccCh-HHhccCCCceEEEeeCCccccccccH
Confidence 689999999987 77889999999999999999999764
No 80
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=69.51 E-value=0.64 Score=54.15 Aligned_cols=36 Identities=22% Similarity=0.122 Sum_probs=20.5
Q ss_pred CCCcEEEccCCCCCCCCC--cCCCCCCCccEEEeeCCC
Q 002014 87 TSLKVVSALPPPARDPTP--LSLLPFCRLKVLELRGCD 122 (982)
Q Consensus 87 ~~Lk~L~Ls~N~L~~~iP--~sf~~L~nL~~LdLS~N~ 122 (982)
.-|+.|.|.+++-.+.-+ ..-.+.+++++|+|.++.
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~ 175 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCK 175 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcce
Confidence 356677776665443222 223356777777777664
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=68.06 E-value=3.8 Score=28.81 Aligned_cols=19 Identities=26% Similarity=0.356 Sum_probs=12.8
Q ss_pred CCCccEEEeeCCCCCccch
Q 002014 110 FCRLKVLELRGCDLSTSAA 128 (982)
Q Consensus 110 L~nL~~LdLS~N~Lss~~p 128 (982)
|++|+.|+|++|+|+.+.+
T Consensus 1 L~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCCEEECCCCcCCcCCH
Confidence 4567777777777776433
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=68.06 E-value=3.8 Score=28.81 Aligned_cols=19 Identities=26% Similarity=0.356 Sum_probs=12.8
Q ss_pred CCCccEEEeeCCCCCccch
Q 002014 110 FCRLKVLELRGCDLSTSAA 128 (982)
Q Consensus 110 L~nL~~LdLS~N~Lss~~p 128 (982)
|++|+.|+|++|+|+.+.+
T Consensus 1 L~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCCEEECCCCcCCcCCH
Confidence 4567777777777776433
No 83
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=66.45 E-value=2.4 Score=29.37 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=13.6
Q ss_pred CCCccEEEeeCCCCCccchhhH
Q 002014 110 FCRLKVLELRGCDLSTSAAKGL 131 (982)
Q Consensus 110 L~nL~~LdLS~N~Lss~~p~~L 131 (982)
+++|++|+|++|.|+...+..+
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHh
Confidence 3678899999998876444443
No 84
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=64.96 E-value=4.7 Score=48.73 Aligned_cols=75 Identities=20% Similarity=0.167 Sum_probs=53.4
Q ss_pred CCCCCCCEEECcCCCCCCCchhhhhc-CCCCCcEEEecCC--CCCCCcccchhHhhhcCCCceeecCCCccChHHHHHHH
Q 002014 255 ENLKSLEGLDISYNIISTFSELEFLA-SLPYLLNLWLEGN--PLCCSRWYRAQVFSYFAHPAKLKVDGKEISTRELWERQ 331 (982)
Q Consensus 255 ~~L~sL~~LdLS~N~Ls~l~~l~~L~-~Lp~L~~L~LsgN--pLs~~~~~r~~v~~~l~~L~lL~LdgN~Is~~e~~~~~ 331 (982)
.+.+.+..++|++|+|..+..+..+. ..|+|..|+|++| .+....++.. + ....|+.+.|+||||...-...++
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K--~-k~l~Leel~l~GNPlc~tf~~~s~ 291 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDK--L-KGLPLEELVLEGNPLCTTFSDRSE 291 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhh--h-cCCCHHHeeecCCccccchhhhHH
Confidence 45678889999999999887665553 5789999999999 5543333221 1 234578899999999866554444
Q ss_pred H
Q 002014 332 L 332 (982)
Q Consensus 332 ~ 332 (982)
.
T Consensus 292 y 292 (585)
T KOG3763|consen 292 Y 292 (585)
T ss_pred H
Confidence 3
No 85
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=63.62 E-value=5.4 Score=28.03 Aligned_cols=23 Identities=13% Similarity=0.124 Sum_probs=18.7
Q ss_pred CCCCcEEEccCCCCCCCCCcCCC
Q 002014 86 LTSLKVVSALPPPARDPTPLSLL 108 (982)
Q Consensus 86 L~~Lk~L~Ls~N~L~~~iP~sf~ 108 (982)
|++|+.|+|.+|.|..+.+..|.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHcc
Confidence 57899999999999977666554
No 86
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=63.62 E-value=5.4 Score=28.03 Aligned_cols=23 Identities=13% Similarity=0.124 Sum_probs=18.7
Q ss_pred CCCCcEEEccCCCCCCCCCcCCC
Q 002014 86 LTSLKVVSALPPPARDPTPLSLL 108 (982)
Q Consensus 86 L~~Lk~L~Ls~N~L~~~iP~sf~ 108 (982)
|++|+.|+|.+|.|..+.+..|.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHcc
Confidence 57899999999999977666554
No 87
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.82 E-value=1.1 Score=47.78 Aligned_cols=85 Identities=28% Similarity=0.305 Sum_probs=41.3
Q ss_pred CCCEEEcCCCCCCC--CCCcCCCCCCCEEEcCCCCCCCccccccccccceeecccCCcCCCcccCCCCCCCCEEECcCC-
Q 002014 192 AVETLDLSRNKFAK--VDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGIENLKSLEGLDISYN- 268 (982)
Q Consensus 192 ~L~~LdLS~N~Lt~--l~~L~~L~sL~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~N~Ls~L~~L~~L~sL~~LdLS~N- 268 (982)
.++.++.++..|.. +..|..++.|+.|.+.++.-- ... .|..+.. -.++|+.|+|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~--dD~---------------~L~~l~~--~~~~L~~L~lsgC~ 162 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYF--DDW---------------CLERLGG--LAPSLQDLDLSGCP 162 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccch--hhH---------------HHHHhcc--cccchheeeccCCC
Confidence 35566666665553 345555666666655554211 100 0000111 2345666666644
Q ss_pred CCCCCchhhhhcCCCCCcEEEecCCCCC
Q 002014 269 IISTFSELEFLASLPYLLNLWLEGNPLC 296 (982)
Q Consensus 269 ~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs 296 (982)
+|++- .+.++..+++|+.|.|.+=|..
T Consensus 163 rIT~~-GL~~L~~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 163 RITDG-GLACLLKLKNLRRLHLYDLPYV 189 (221)
T ss_pred eechh-HHHHHHHhhhhHHHHhcCchhh
Confidence 45553 3455666666666666554443
No 88
>PHA02858 EIF2a-like PKR inhibitor; Provisional
Probab=59.75 E-value=15 Score=34.02 Aligned_cols=70 Identities=20% Similarity=0.371 Sum_probs=54.7
Q ss_pred cceEEEEEecCCcccceeEEEEeecCCeeEEEEEeeeecCCcccc--cccccccchhhHHHhhh--ccceEEEEEeeCC
Q 002014 827 QYTVCWILEQDFMHRGREVAVLRSSENKFYVLLFGVTVDGTGSIL--NLLGCHKIEDIREVLIG--LGLQVLRVSTEMG 901 (982)
Q Consensus 827 ~~~~~~~~~~~~~~~~~e~~~l~~s~~k~~~ll~~~~~~~~~~~~--~~l~~~~~~~~~~v~~g--~glq~~r~~~~~~ 901 (982)
+-|+||.|-..-+.+. .| -.-.+.-+||=|++-. =.|-|+ +=|.--|++.+++.+|| .=-||+||--+.|
T Consensus 6 ~lafcy~~P~v~dvv~-~V--v~i~d~~~YV~LleY~--iegmIl~~selsr~rirsi~kllVGk~e~v~ViRVDk~KG 79 (86)
T PHA02858 6 DLAFCYVFPNINEVTK-GI--VFVKDNIFYVKLIDYG--LEALIVNYVNVNADRAEKLKKKLVGKTINVQVIRTDKLKG 79 (86)
T ss_pred eeEEEEecCCCCeEEE-EE--EEEeccEEEEEEecCc--cceEEecHHHHhHHHHHhhhhhhcCCeeEEEEEEECCCCC
Confidence 5689999999888876 44 4567899999999985 445454 66778899999999977 3478999876666
No 89
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=51.62 E-value=13 Score=27.00 Aligned_cols=15 Identities=53% Similarity=0.784 Sum_probs=6.7
Q ss_pred CCCEEEcCCCCCCCC
Q 002014 192 AVETLDLSRNKFAKV 206 (982)
Q Consensus 192 ~L~~LdLS~N~Lt~l 206 (982)
+|+.|+|+.|+|+.+
T Consensus 3 ~L~~L~L~~NkI~~I 17 (26)
T smart00365 3 NLEELDLSQNKIKKI 17 (26)
T ss_pred ccCEEECCCCcccee
Confidence 344444444444443
No 90
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.19 E-value=15 Score=39.58 Aligned_cols=81 Identities=21% Similarity=0.153 Sum_probs=49.7
Q ss_pred cccccccCCCCCCchhhHHHhcCCCCCcEEEccCCCCCCCCC-cCCC-CCCCccEEEeeCC-CCCccchhhHHhhhhhhH
Q 002014 63 LRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTP-LSLL-PFCRLKVLELRGC-DLSTSAAKGLLELRHTLE 139 (982)
Q Consensus 63 l~l~~LdLs~n~~L~~Lp~~L~~L~~Lk~L~Ls~N~L~~~iP-~sf~-~L~nL~~LdLS~N-~Lss~~p~~L~~L~~LLe 139 (982)
+.+..+|=+++.....=-+-+.+++.|+.|.+.++.-.+.-. .-++ ..++|+.|+|++| +||+.-...+..+++|..
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 344455655554333323456778888889887775332110 1111 3589999999987 577655666777777666
Q ss_pred hhhc
Q 002014 140 KIIC 143 (982)
Q Consensus 140 LLL~ 143 (982)
+++.
T Consensus 181 L~l~ 184 (221)
T KOG3864|consen 181 LHLY 184 (221)
T ss_pred HHhc
Confidence 6543
No 91
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=43.56 E-value=19 Score=26.16 Aligned_cols=17 Identities=41% Similarity=0.669 Sum_probs=9.6
Q ss_pred CCCCEEEcCCCCCCCcc
Q 002014 213 VNLKHLDLGFNNLRSIA 229 (982)
Q Consensus 213 ~sL~~LdLS~N~Ls~L~ 229 (982)
.+|+.|+|++|+|+.+.
T Consensus 2 ~~L~~L~L~~NkI~~IE 18 (26)
T smart00365 2 TNLEELDLSQNKIKKIE 18 (26)
T ss_pred CccCEEECCCCccceec
Confidence 45566666666655443
No 92
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=40.06 E-value=18 Score=26.36 Aligned_cols=18 Identities=33% Similarity=0.552 Sum_probs=13.0
Q ss_pred CCCCEEECcCCCCCCCch
Q 002014 258 KSLEGLDISYNIISTFSE 275 (982)
Q Consensus 258 ~sL~~LdLS~N~Ls~l~~ 275 (982)
++|+.|++++|+|+.+|.
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 357777777777777764
No 93
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=39.25 E-value=17 Score=26.53 Aligned_cols=17 Identities=29% Similarity=0.321 Sum_probs=11.0
Q ss_pred CccEEEccCCccccchh
Q 002014 169 RLSFVSCSCNRLVIMDE 185 (982)
Q Consensus 169 ~Lq~LdLS~N~Lt~LP~ 185 (982)
.|+.|++++|+|+.+|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 46666666666666654
No 94
>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A.
Probab=33.32 E-value=36 Score=33.13 Aligned_cols=30 Identities=23% Similarity=0.406 Sum_probs=23.1
Q ss_pred EEEEEeeCCceEEEEeccHHHHHHHhheee
Q 002014 893 VLRVSTEMGATYLLMTRSIEKSRQLFCTLQ 922 (982)
Q Consensus 893 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 922 (982)
|.||..++|..|||-|.+.|+..+=+..|+
T Consensus 86 VFrL~~~dg~e~Lfqa~~~~~m~~Wi~~IN 115 (119)
T PF15410_consen 86 VFRLRTADGSEYLFQASDEEEMNEWIDAIN 115 (119)
T ss_dssp EEEEE-TTS-EEEEE-SSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCEEEEECCCHHHHHHHHHHHh
Confidence 789999999999999999999887665543
No 95
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=29.45 E-value=40 Score=24.46 Aligned_cols=15 Identities=27% Similarity=0.346 Sum_probs=12.1
Q ss_pred CCccEEEeeCCCCCc
Q 002014 111 CRLKVLELRGCDLST 125 (982)
Q Consensus 111 ~nL~~LdLS~N~Lss 125 (982)
++|++|||++|.|..
T Consensus 2 ~~L~~LdL~~N~i~~ 16 (28)
T smart00368 2 PSLRELDLSNNKLGD 16 (28)
T ss_pred CccCEEECCCCCCCH
Confidence 578888888888864
No 96
>PF11150 DUF2927: Protein of unknown function (DUF2927); InterPro: IPR021323 This family is conserved in Proteobacteria. Several members are described as being putative lipoproteins, but otherwise the function is not known.
Probab=20.17 E-value=67 Score=34.81 Aligned_cols=21 Identities=29% Similarity=0.340 Sum_probs=17.3
Q ss_pred HHHhhhHHHHHHh---hccCccee
Q 002014 607 LHRRHNLVAEILQ---LSAESYSV 627 (982)
Q Consensus 607 l~rr~~l~~~~lq---~~~~~~~~ 627 (982)
+.||+|++|||.| +..|||.+
T Consensus 144 ~~~~~Ci~EElaQ~LGl~NDs~~~ 167 (213)
T PF11150_consen 144 QERRDCIHEELAQGLGLPNDSPRA 167 (213)
T ss_pred hHHHHHHHHHHHHHcCCccCCCcC
Confidence 4799999999998 56677765
Done!